Query 003792
Match_columns 795
No_of_seqs 283 out of 1128
Neff 7.3
Searched_HMMs 46136
Date Thu Mar 28 12:07:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003792.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003792hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2103 Uncharacterized conser 100.0 1E-114 3E-119 968.5 56.8 705 14-793 9-731 (910)
2 PRK11138 outer membrane biogen 99.9 3.7E-20 8.1E-25 208.5 34.9 241 1-258 1-278 (394)
3 TIGR03300 assembly_YfgL outer 99.8 1E-17 2.2E-22 187.5 34.9 217 23-258 34-263 (377)
4 PRK11138 outer membrane biogen 99.8 2.3E-16 4.9E-21 177.8 29.4 216 26-258 86-316 (394)
5 PF13360 PQQ_2: PQQ-like domai 99.7 1.3E-15 2.8E-20 158.5 26.5 216 24-258 8-234 (238)
6 TIGR03300 assembly_YfgL outer 99.7 6.2E-15 1.3E-19 165.0 30.2 211 27-258 83-301 (377)
7 cd00216 PQQ_DH Dehydrogenases 99.6 1.4E-14 3.1E-19 167.6 23.4 220 27-257 37-322 (488)
8 cd00216 PQQ_DH Dehydrogenases 99.6 3.7E-14 8E-19 164.1 25.4 229 26-265 127-434 (488)
9 PF13360 PQQ_2: PQQ-like domai 99.6 1.5E-13 3.3E-18 142.9 23.4 181 61-257 1-194 (238)
10 TIGR03075 PQQ_enz_alc_DH PQQ-d 99.5 1.3E-12 2.9E-17 152.0 23.0 219 29-257 47-336 (527)
11 COG1520 FOG: WD40-like repeat 99.5 2.5E-12 5.4E-17 143.9 23.2 217 26-257 40-271 (370)
12 TIGR03074 PQQ_membr_DH membran 99.5 2.6E-12 5.7E-17 153.8 24.2 208 49-257 190-480 (764)
13 TIGR03074 PQQ_membr_DH membran 99.3 7.5E-11 1.6E-15 141.4 21.3 189 26-219 211-486 (764)
14 COG1520 FOG: WD40-like repeat 99.3 1.5E-10 3.2E-15 129.6 20.4 185 25-221 84-279 (370)
15 TIGR03075 PQQ_enz_alc_DH PQQ-d 99.3 2.1E-10 4.5E-15 133.7 20.1 186 26-218 86-341 (527)
16 KOG4649 PQQ (pyrrolo-quinoline 99.0 2.2E-08 4.7E-13 102.1 19.0 183 53-257 23-209 (354)
17 KOG4649 PQQ (pyrrolo-quinoline 98.8 2.6E-06 5.7E-11 87.2 23.6 178 25-223 39-219 (354)
18 COG4993 Gcd Glucose dehydrogen 98.6 1E-06 2.2E-11 99.5 17.9 204 53-257 214-491 (773)
19 TIGR03866 PQQ_ABC_repeats PQQ- 97.9 0.051 1.1E-06 57.5 34.2 183 56-257 4-190 (300)
20 COG4993 Gcd Glucose dehydrogen 97.8 0.00032 7E-09 79.8 15.2 165 52-218 271-496 (773)
21 PF02239 Cytochrom_D1: Cytochr 97.7 0.05 1.1E-06 61.1 30.8 318 21-362 18-355 (369)
22 TIGR03866 PQQ_ABC_repeats PQQ- 97.7 0.11 2.3E-06 55.0 31.7 189 52-257 41-240 (300)
23 PF01011 PQQ: PQQ enzyme repea 97.6 9.6E-05 2.1E-09 54.5 4.6 31 54-84 1-31 (38)
24 cd00200 WD40 WD40 domain, foun 97.5 0.044 9.6E-07 56.1 25.5 188 53-257 63-252 (289)
25 cd00200 WD40 WD40 domain, foun 97.5 0.09 2E-06 53.8 26.9 186 53-257 21-210 (289)
26 PF02239 Cytochrom_D1: Cytochr 97.4 0.24 5.2E-06 55.7 30.1 191 54-257 6-205 (369)
27 TIGR02658 TTQ_MADH_Hv methylam 97.3 0.42 9.1E-06 53.2 33.9 190 52-257 11-226 (352)
28 TIGR02658 TTQ_MADH_Hv methylam 97.3 0.054 1.2E-06 60.1 23.5 211 49-263 53-338 (352)
29 PF10282 Lactonase: Lactonase, 97.2 0.62 1.3E-05 51.7 33.7 221 26-253 22-274 (345)
30 PF05096 Glu_cyclase_2: Glutam 97.1 0.095 2.1E-06 55.5 21.8 155 52-220 54-213 (264)
31 PTZ00421 coronin; Provisional 97.0 0.14 3.1E-06 59.7 24.5 195 53-257 88-293 (493)
32 PF13570 PQQ_3: PQQ-like domai 97.0 0.0013 2.8E-08 49.0 4.7 40 73-115 1-40 (40)
33 PF10282 Lactonase: Lactonase, 96.9 1 2.2E-05 50.0 38.2 195 56-257 2-227 (345)
34 PF13570 PQQ_3: PQQ-like domai 96.9 0.0021 4.6E-08 47.8 4.9 40 29-72 1-40 (40)
35 smart00564 PQQ beta-propeller 96.8 0.0015 3.3E-08 46.1 3.8 27 53-79 6-32 (33)
36 PF01011 PQQ: PQQ enzyme repea 96.6 0.0049 1.1E-07 45.4 5.1 31 98-128 2-32 (38)
37 KOG0296 Angio-associated migra 96.5 0.14 3.1E-06 55.5 17.4 156 51-219 200-365 (399)
38 KOG2103 Uncharacterized conser 96.5 0.064 1.4E-06 63.5 16.0 191 27-246 65-267 (910)
39 PTZ00420 coronin; Provisional 96.4 1.2 2.6E-05 52.9 26.4 193 53-257 87-296 (568)
40 PF05935 Arylsulfotrans: Aryls 96.3 0.14 3E-06 59.6 17.9 150 53-218 113-309 (477)
41 KOG2055 WD40 repeat protein [G 96.0 1.1 2.4E-05 50.2 21.2 212 38-267 213-430 (514)
42 KOG0318 WD40 repeat stress pro 96.0 4.1 9E-05 46.5 33.8 153 50-214 199-354 (603)
43 KOG1539 WD repeat protein [Gen 96.0 3.1 6.6E-05 49.9 25.8 186 53-251 124-315 (910)
44 smart00564 PQQ beta-propeller 95.9 0.013 2.8E-07 41.3 4.2 29 94-122 4-32 (33)
45 KOG0316 Conserved WD40 repeat- 95.6 3.4 7.4E-05 42.8 22.8 146 94-257 28-176 (307)
46 KOG2048 WD40 repeat protein [G 95.5 2.9 6.2E-05 49.0 23.1 188 53-257 37-236 (691)
47 PRK11028 6-phosphogluconolacto 95.4 5.1 0.00011 43.8 28.2 197 51-255 44-259 (330)
48 KOG0316 Conserved WD40 repeat- 95.2 4.3 9.3E-05 42.1 20.5 183 40-257 19-216 (307)
49 KOG0291 WD40-repeat-containing 95.2 8.9 0.00019 45.8 25.6 108 98-218 364-474 (893)
50 KOG0296 Angio-associated migra 95.1 6.7 0.00015 43.0 29.2 151 52-219 75-229 (399)
51 PTZ00421 coronin; Provisional 95.0 2.7 5.9E-05 49.1 21.6 155 53-219 138-299 (493)
52 KOG0278 Serine/threonine kinas 94.8 1.6 3.5E-05 45.5 16.5 106 53-170 155-262 (334)
53 PLN02919 haloacid dehalogenase 94.7 3.3 7.1E-05 53.0 22.7 200 53-257 635-891 (1057)
54 PLN00181 protein SPA1-RELATED; 94.6 16 0.00034 45.5 28.4 189 52-255 494-691 (793)
55 PHA02713 hypothetical protein; 94.6 2.3 5E-05 50.5 20.1 172 53-241 303-519 (557)
56 KOG2048 WD40 repeat protein [G 94.4 3.3 7.2E-05 48.5 19.7 153 52-218 121-283 (691)
57 KOG0319 WD40-repeat-containing 94.4 14 0.00031 43.9 25.5 195 51-257 72-314 (775)
58 KOG0291 WD40-repeat-containing 94.3 16 0.00034 43.8 34.6 97 153-257 361-469 (893)
59 PF05935 Arylsulfotrans: Aryls 93.8 1.3 2.9E-05 51.5 15.5 147 22-175 130-314 (477)
60 PHA03098 kelch-like protein; P 93.6 4.7 0.0001 47.5 20.1 189 53-257 294-514 (534)
61 COG4257 Vgb Streptogramin lyas 93.6 3.6 7.7E-05 43.7 16.3 193 53-266 72-272 (353)
62 KOG0310 Conserved WD40 repeat- 93.5 3.7 7.9E-05 46.4 17.2 151 52-218 121-276 (487)
63 TIGR03548 mutarot_permut cycli 93.4 13 0.00029 40.6 22.0 162 25-197 45-232 (323)
64 KOG0315 G-protein beta subunit 92.9 14 0.0003 38.8 21.0 143 98-257 11-157 (311)
65 PHA02790 Kelch-like protein; P 92.9 12 0.00027 43.6 21.6 168 53-241 271-453 (480)
66 KOG0266 WD40 repeat-containing 92.5 16 0.00034 42.3 21.8 192 52-257 214-412 (456)
67 PRK11028 6-phosphogluconolacto 92.5 19 0.00041 39.3 31.4 190 55-255 3-206 (330)
68 KOG3881 Uncharacterized conser 92.4 4.9 0.00011 44.4 15.9 153 51-217 113-284 (412)
69 PF06433 Me-amine-dh_H: Methyl 92.3 21 0.00046 39.5 25.1 195 52-257 105-323 (342)
70 KOG1446 Histone H3 (Lys4) meth 92.3 19 0.00041 38.9 22.8 217 20-257 37-265 (311)
71 PF05096 Glu_cyclase_2: Glutam 92.3 7 0.00015 41.7 16.7 154 95-268 54-216 (264)
72 PF08450 SGL: SMP-30/Gluconola 92.1 17 0.00036 37.9 26.4 150 53-218 11-174 (246)
73 KOG0274 Cdc4 and related F-box 92.0 15 0.00032 43.5 20.7 180 53-256 218-402 (537)
74 KOG0278 Serine/threonine kinas 91.9 4 8.6E-05 42.7 13.7 108 95-218 154-262 (334)
75 PLN00181 protein SPA1-RELATED; 91.6 43 0.00094 41.6 29.8 106 53-166 545-652 (793)
76 KOG1539 WD repeat protein [Gen 91.4 17 0.00037 44.0 19.9 155 49-215 168-325 (910)
77 PTZ00420 coronin; Provisional 91.3 22 0.00048 42.4 21.2 69 56-126 141-209 (568)
78 PRK05137 tolB translocation pr 91.2 33 0.00071 39.3 24.3 188 51-257 211-415 (435)
79 KOG1445 Tumor-specific antigen 91.1 1.9 4.2E-05 50.0 11.5 150 51-218 638-808 (1012)
80 PLN02919 haloacid dehalogenase 90.9 12 0.00027 48.0 20.0 157 53-215 694-893 (1057)
81 PRK14131 N-acetylneuraminic ac 90.6 33 0.00071 38.5 21.3 70 53-124 38-122 (376)
82 TIGR03548 mutarot_permut cycli 90.4 31 0.00067 37.7 23.1 145 64-218 40-200 (323)
83 PF14269 Arylsulfotran_2: Aryl 90.2 5.3 0.00012 43.6 13.9 112 53-172 154-298 (299)
84 PF14269 Arylsulfotran_2: Aryl 90.0 33 0.00071 37.5 22.4 63 153-219 95-182 (299)
85 COG4257 Vgb Streptogramin lyas 90.0 15 0.00032 39.2 16.0 194 53-266 114-315 (353)
86 KOG0285 Pleiotropic regulator 89.8 32 0.00069 38.0 18.7 232 55-314 207-441 (460)
87 PHA02713 hypothetical protein; 89.0 31 0.00068 41.0 20.3 162 64-241 273-470 (557)
88 PF08450 SGL: SMP-30/Gluconola 88.9 32 0.0007 35.8 25.2 151 53-221 51-223 (246)
89 COG3823 Glutamine cyclotransfe 88.4 16 0.00036 37.4 14.4 151 53-218 55-212 (262)
90 PRK03629 tolB translocation pr 88.3 53 0.0011 37.6 23.3 151 51-215 208-368 (429)
91 KOG0270 WD40 repeat-containing 88.3 15 0.00033 41.3 15.3 120 97-232 257-382 (463)
92 KOG0266 WD40 repeat-containing 88.1 34 0.00073 39.6 19.4 156 53-218 258-417 (456)
93 KOG0275 Conserved WD40 repeat- 88.1 5.5 0.00012 42.8 11.5 185 61-257 273-470 (508)
94 PRK04922 tolB translocation pr 88.0 55 0.0012 37.4 23.1 151 51-215 213-373 (433)
95 PRK04792 tolB translocation pr 88.0 58 0.0012 37.6 23.9 149 51-214 227-386 (448)
96 KOG0649 WD40 repeat protein [G 87.4 41 0.0009 35.3 17.3 107 56-170 75-194 (325)
97 PHA02790 Kelch-like protein; P 87.3 19 0.00041 42.0 16.8 146 53-213 318-473 (480)
98 KOG0303 Actin-binding protein 86.9 13 0.00029 41.3 13.7 72 52-126 143-215 (472)
99 KOG1274 WD40 repeat protein [G 86.3 39 0.00085 41.4 18.3 186 52-254 65-262 (933)
100 KOG4547 WD40 repeat-containing 85.4 21 0.00045 41.5 15.0 105 146-258 70-176 (541)
101 TIGR03547 muta_rot_YjhT mutatr 85.3 64 0.0014 35.5 20.0 161 53-223 17-238 (346)
102 COG2706 3-carboxymuconate cycl 84.7 69 0.0015 35.4 26.7 205 44-253 42-273 (346)
103 KOG0286 G-protein beta subunit 84.0 49 0.0011 35.6 15.9 154 52-218 155-311 (343)
104 KOG0279 G protein beta subunit 83.6 47 0.001 35.6 15.4 72 52-123 116-189 (315)
105 KOG0310 Conserved WD40 repeat- 83.6 20 0.00044 40.7 13.6 113 55-177 168-283 (487)
106 KOG4441 Proteins containing BT 83.6 25 0.00054 42.0 15.5 150 53-219 284-459 (571)
107 PRK00178 tolB translocation pr 83.5 87 0.0019 35.6 23.6 148 51-214 208-367 (430)
108 KOG0282 mRNA splicing factor [ 82.2 16 0.00035 41.5 12.1 73 52-125 269-341 (503)
109 KOG0315 G-protein beta subunit 82.1 72 0.0016 33.7 18.1 61 53-115 95-155 (311)
110 KOG0293 WD40 repeat-containing 81.4 38 0.00083 38.0 14.4 212 29-257 257-473 (519)
111 KOG0649 WD40 repeat protein [G 80.8 80 0.0017 33.3 24.3 189 53-265 22-245 (325)
112 KOG2321 WD40 repeat protein [G 80.2 36 0.00078 39.7 14.1 186 56-253 148-342 (703)
113 PHA03098 kelch-like protein; P 80.0 66 0.0014 37.8 17.4 135 93-240 292-443 (534)
114 KOG0285 Pleiotropic regulator 79.9 1E+02 0.0023 34.1 21.9 147 54-218 164-315 (460)
115 KOG0270 WD40 repeat-containing 79.9 38 0.00083 38.2 13.9 94 30-129 268-376 (463)
116 KOG0318 WD40 repeat stress pro 79.7 1.3E+02 0.0028 35.0 28.3 182 53-257 290-476 (603)
117 KOG2106 Uncharacterized conser 79.2 1.1E+02 0.0024 35.4 17.3 147 53-218 339-486 (626)
118 PF06433 Me-amine-dh_H: Methyl 79.1 1.1E+02 0.0024 34.0 22.9 189 54-257 3-216 (342)
119 KOG1446 Histone H3 (Lys4) meth 79.0 1E+02 0.0022 33.5 27.2 198 37-257 13-220 (311)
120 KOG0275 Conserved WD40 repeat- 78.6 32 0.00069 37.3 12.3 196 51-264 223-431 (508)
121 KOG1036 Mitotic spindle checkp 77.7 73 0.0016 34.5 14.7 151 85-257 14-166 (323)
122 KOG0295 WD40 repeat-containing 77.7 1.2E+02 0.0026 33.6 17.7 139 103-257 212-367 (406)
123 PRK00178 tolB translocation pr 77.4 1.4E+02 0.0029 34.0 23.4 186 55-257 165-366 (430)
124 KOG4547 WD40 repeat-containing 77.2 1.4E+02 0.0031 34.9 17.9 113 54-174 71-184 (541)
125 TIGR03547 muta_rot_YjhT mutatr 76.9 1.2E+02 0.0027 33.3 20.4 112 106-227 168-313 (346)
126 PF14727 PHTB1_N: PTHB1 N-term 76.3 48 0.001 37.9 14.0 93 31-128 231-330 (418)
127 KOG0282 mRNA splicing factor [ 75.9 22 0.00048 40.4 10.8 142 97-256 227-374 (503)
128 KOG1274 WD40 repeat protein [G 75.5 68 0.0015 39.5 15.3 119 52-174 107-230 (933)
129 COG4946 Uncharacterized protei 74.5 1.7E+02 0.0037 33.7 18.9 192 49-257 231-434 (668)
130 COG3391 Uncharacterized conser 73.9 1.6E+02 0.0035 33.2 23.2 191 52-257 84-286 (381)
131 PLN02193 nitrile-specifier pro 73.5 1.3E+02 0.0027 35.1 17.0 135 53-196 228-385 (470)
132 PRK02888 nitrous-oxide reducta 72.9 1.2E+02 0.0026 36.4 16.4 141 55-215 206-356 (635)
133 COG3391 Uncharacterized conser 71.9 1.8E+02 0.0038 32.8 19.8 157 51-218 125-291 (381)
134 TIGR02800 propeller_TolB tol-p 71.9 1.7E+02 0.0038 32.7 23.7 149 51-214 199-358 (417)
135 KOG0646 WD40 repeat protein [G 70.8 2E+02 0.0043 33.0 16.5 59 188-255 188-248 (476)
136 KOG0265 U5 snRNP-specific prot 69.7 1.5E+02 0.0033 32.2 14.7 35 94-128 100-134 (338)
137 PRK04043 tolB translocation pr 68.8 2.2E+02 0.0047 32.6 23.9 186 51-256 197-402 (419)
138 PF14870 PSII_BNR: Photosynthe 68.8 1.6E+02 0.0035 32.2 15.4 170 19-198 122-296 (302)
139 PF05567 Neisseria_PilC: Neiss 68.0 1.1E+02 0.0023 34.1 14.2 55 201-257 180-242 (335)
140 KOG0639 Transducin-like enhanc 67.7 70 0.0015 36.9 12.3 116 94-222 475-593 (705)
141 KOG4378 Nuclear protein COP1 [ 67.6 1.4E+02 0.0031 34.4 14.6 144 53-210 133-280 (673)
142 KOG0271 Notchless-like WD40 re 67.5 26 0.00057 38.9 8.7 110 50-167 166-281 (480)
143 PLN02153 epithiospecifier prot 67.3 2E+02 0.0043 31.6 22.3 196 53-257 32-287 (341)
144 cd00028 B_lectin Bulb-type man 67.3 40 0.00087 31.0 9.1 71 73-170 41-112 (116)
145 KOG0288 WD40 repeat protein Ti 67.1 1.5E+02 0.0032 33.5 14.4 185 53-258 231-421 (459)
146 COG3823 Glutamine cyclotransfe 66.9 67 0.0015 33.2 10.9 109 53-169 100-212 (262)
147 KOG0303 Actin-binding protein 66.7 75 0.0016 35.6 12.1 92 96-198 144-237 (472)
148 TIGR02800 propeller_TolB tol-p 66.5 2.2E+02 0.0048 31.8 23.1 149 94-257 200-357 (417)
149 smart00108 B_lectin Bulb-type 66.3 49 0.0011 30.2 9.5 82 62-170 29-111 (114)
150 KOG0643 Translation initiation 66.3 1.9E+02 0.0041 31.0 19.5 103 102-218 70-185 (327)
151 PF06977 SdiA-regulated: SdiA- 65.9 1.9E+02 0.0041 30.8 20.9 61 52-114 32-94 (248)
152 PRK05137 tolB translocation pr 65.7 2.5E+02 0.0054 32.1 23.9 137 64-214 183-326 (435)
153 KOG2055 WD40 repeat protein [G 64.6 79 0.0017 36.1 11.9 77 50-128 312-388 (514)
154 KOG0294 WD40 repeat-containing 64.4 2.2E+02 0.0049 31.1 17.1 187 45-256 90-283 (362)
155 KOG2106 Uncharacterized conser 64.3 2.8E+02 0.0061 32.3 23.5 219 53-311 257-488 (626)
156 PRK14131 N-acetylneuraminic ac 63.7 2.5E+02 0.0054 31.4 20.4 27 53-81 84-122 (376)
157 PRK03629 tolB translocation pr 63.2 2.8E+02 0.006 31.8 23.8 149 94-257 209-366 (429)
158 PF14727 PHTB1_N: PTHB1 N-term 62.9 2.8E+02 0.0061 31.8 21.2 188 53-257 145-363 (418)
159 KOG0288 WD40 repeat protein Ti 62.4 71 0.0015 35.9 10.9 109 99-219 314-426 (459)
160 KOG4499 Ca2+-binding protein R 62.0 1.3E+02 0.0029 31.6 12.1 78 153-236 179-265 (310)
161 PRK13684 Ycf48-like protein; P 61.7 2.6E+02 0.0056 30.9 19.1 179 21-218 109-294 (334)
162 KOG0292 Vesicle coat complex C 61.4 4.1E+02 0.0089 33.2 20.6 111 74-212 238-350 (1202)
163 KOG0295 WD40 repeat-containing 60.8 1E+02 0.0023 34.1 11.7 65 98-170 306-372 (406)
164 KOG1272 WD40-repeat-containing 60.8 23 0.0005 40.2 7.0 181 53-255 141-324 (545)
165 KOG4441 Proteins containing BT 60.4 3.6E+02 0.0079 32.3 18.5 171 53-240 332-528 (571)
166 PF14583 Pectate_lyase22: Olig 59.8 2.8E+02 0.0061 31.4 15.3 102 68-177 15-125 (386)
167 PLN02193 nitrile-specifier pro 59.7 3.3E+02 0.0072 31.6 22.2 198 53-263 175-417 (470)
168 PF05262 Borrelia_P83: Borreli 58.6 62 0.0013 37.7 10.3 98 153-256 374-472 (489)
169 KOG0271 Notchless-like WD40 re 58.6 3.1E+02 0.0067 30.9 18.0 64 95-167 127-192 (480)
170 PF14870 PSII_BNR: Photosynthe 58.3 2.8E+02 0.0061 30.3 20.3 181 23-219 83-268 (302)
171 KOG1027 Serine/threonine prote 57.5 41 0.00089 41.2 8.8 108 52-176 106-215 (903)
172 KOG0319 WD40-repeat-containing 57.5 1.7E+02 0.0036 35.5 13.4 185 53-254 161-354 (775)
173 KOG0274 Cdc4 and related F-box 57.3 4E+02 0.0086 31.7 23.0 180 53-257 261-444 (537)
174 KOG0306 WD40-repeat-containing 56.9 4.5E+02 0.0097 32.2 26.2 104 56-170 339-450 (888)
175 KOG0639 Transducin-like enhanc 56.7 1.6E+02 0.0034 34.2 12.5 112 51-172 519-631 (705)
176 KOG1036 Mitotic spindle checkp 56.6 2.7E+02 0.0059 30.3 13.7 101 53-165 65-166 (323)
177 COG2706 3-carboxymuconate cycl 56.3 3.2E+02 0.007 30.3 30.9 192 55-255 4-222 (346)
178 KOG1188 WD40 repeat protein [G 55.2 1.3E+02 0.0029 33.1 11.3 64 148-215 43-107 (376)
179 PLN00033 photosystem II stabil 54.6 3.8E+02 0.0081 30.6 20.8 134 23-171 68-214 (398)
180 COG3386 Gluconolactonase [Carb 53.9 3.3E+02 0.0071 29.9 14.6 58 98-166 39-97 (307)
181 KOG0280 Uncharacterized conser 52.8 30 0.00064 37.3 5.9 74 53-128 178-256 (339)
182 PLN02153 epithiospecifier prot 52.5 3.5E+02 0.0076 29.7 18.1 155 53-218 85-290 (341)
183 PRK04792 tolB translocation pr 52.1 4.2E+02 0.0092 30.5 27.4 150 94-257 228-385 (448)
184 KOG3881 Uncharacterized conser 52.0 25 0.00055 39.1 5.4 73 51-123 257-329 (412)
185 PF01453 B_lectin: D-mannose b 51.9 1.1E+02 0.0023 28.3 9.0 60 95-170 19-78 (114)
186 KOG0263 Transcription initiati 51.8 1.3E+02 0.0028 36.4 11.4 85 102-197 553-639 (707)
187 KOG0289 mRNA splicing factor [ 51.7 4.2E+02 0.0091 30.3 20.1 76 51-127 313-390 (506)
188 COG3419 PilY1 Tfp pilus assemb 50.4 2.4E+02 0.0052 35.7 13.8 116 97-215 583-734 (1036)
189 PF14783 BBS2_Mid: Ciliary BBS 49.8 2.2E+02 0.0047 26.4 12.1 68 53-127 15-82 (111)
190 PRK01742 tolB translocation pr 49.7 4.4E+02 0.0096 30.0 20.9 144 51-215 213-366 (429)
191 KOG4499 Ca2+-binding protein R 48.1 83 0.0018 33.1 8.1 83 95-177 169-256 (310)
192 KOG0283 WD40 repeat-containing 46.7 2.8E+02 0.0061 33.8 13.3 142 96-252 421-574 (712)
193 KOG2111 Uncharacterized conser 46.1 4.4E+02 0.0094 29.0 13.3 109 95-212 193-326 (346)
194 smart00108 B_lectin Bulb-type 45.9 2.1E+02 0.0045 26.0 10.0 52 107-173 31-82 (114)
195 KOG0647 mRNA export protein (c 45.1 4.5E+02 0.0098 28.8 18.6 156 52-223 83-241 (347)
196 KOG1517 Guanine nucleotide bin 44.9 3.7E+02 0.0079 34.3 13.9 147 96-254 1177-1333(1387)
197 PRK04922 tolB translocation pr 44.0 5.4E+02 0.012 29.3 23.6 149 94-257 214-371 (433)
198 TIGR02276 beta_rpt_yvtn 40-res 43.8 65 0.0014 23.2 5.1 31 52-82 2-33 (42)
199 PF03178 CPSF_A: CPSF A subuni 43.3 4.6E+02 0.01 28.4 22.6 175 64-254 3-202 (321)
200 PRK13684 Ycf48-like protein; P 43.1 4.9E+02 0.011 28.7 22.9 166 31-219 35-209 (334)
201 KOG0263 Transcription initiati 42.7 1E+02 0.0022 37.2 8.9 73 53-126 547-619 (707)
202 PF06977 SdiA-regulated: SdiA- 42.6 2.4E+02 0.0052 30.0 11.0 70 181-255 26-95 (248)
203 cd00028 B_lectin Bulb-type man 41.5 2.1E+02 0.0046 26.1 9.3 22 151-173 62-83 (116)
204 KOG0281 Beta-TrCP (transducin 39.8 67 0.0014 35.4 6.2 72 52-126 329-400 (499)
205 PRK02889 tolB translocation pr 39.2 6.3E+02 0.014 28.8 23.8 150 51-215 205-365 (427)
206 KOG2321 WD40 repeat protein [G 38.9 6.9E+02 0.015 29.8 14.2 155 94-257 62-261 (703)
207 KOG1188 WD40 repeat protein [G 38.7 4.7E+02 0.01 29.1 12.3 173 69-255 17-197 (376)
208 COG3386 Gluconolactonase [Carb 38.5 4.8E+02 0.01 28.6 12.9 75 51-127 172-255 (307)
209 KOG0646 WD40 repeat protein [G 38.5 6.7E+02 0.015 28.9 17.7 135 55-198 95-239 (476)
210 PF02897 Peptidase_S9_N: Proly 37.6 6.3E+02 0.014 28.3 19.3 146 63-215 252-409 (414)
211 KOG0265 U5 snRNP-specific prot 37.2 90 0.002 33.8 6.6 63 52-115 101-164 (338)
212 KOG1912 WD40 repeat protein [G 37.0 3.7E+02 0.008 33.1 12.0 76 98-177 81-158 (1062)
213 KOG1445 Tumor-specific antigen 36.9 3.6E+02 0.0078 32.3 11.7 60 94-162 139-200 (1012)
214 KOG0771 Prolactin regulatory e 34.8 4.8E+02 0.01 29.5 12.0 20 236-255 293-312 (398)
215 PF15525 DUF4652: Domain of un 34.8 5.1E+02 0.011 26.4 11.1 65 497-573 88-153 (200)
216 KOG0281 Beta-TrCP (transducin 32.5 2.1E+02 0.0045 31.8 8.4 91 104-212 338-430 (499)
217 KOG1273 WD40 repeat protein [G 32.4 7.2E+02 0.016 27.4 17.2 156 53-222 35-195 (405)
218 PF08553 VID27: VID27 cytoplas 32.0 7.6E+02 0.017 30.9 14.2 112 95-213 492-608 (794)
219 KOG0289 mRNA splicing factor [ 31.8 8.4E+02 0.018 28.0 22.7 199 53-267 231-431 (506)
220 KOG0379 Kelch repeat-containin 31.0 8.6E+02 0.019 28.4 14.2 155 94-257 69-252 (482)
221 KOG0272 U4/U6 small nuclear ri 30.9 7E+02 0.015 28.5 12.3 70 53-124 273-343 (459)
222 PF02897 Peptidase_S9_N: Proly 29.9 8.3E+02 0.018 27.4 28.8 98 154-254 252-357 (414)
223 KOG3914 WD repeat protein WDR4 28.8 1.2E+02 0.0027 33.9 6.2 72 52-125 162-234 (390)
224 TIGR02276 beta_rpt_yvtn 40-res 28.5 1.3E+02 0.0028 21.5 4.6 30 188-220 3-32 (42)
225 PF04841 Vps16_N: Vps16, N-ter 28.2 9.3E+02 0.02 27.4 19.6 98 64-170 62-163 (410)
226 PF00780 CNH: CNH domain; Int 28.2 7E+02 0.015 26.0 15.9 155 92-264 3-173 (275)
227 PF01456 Mucin: Mucin-like gly 28.0 42 0.00092 32.1 2.3 27 1-27 1-27 (143)
228 KOG0273 Beta-transducin family 27.8 1E+03 0.022 27.7 17.1 65 102-174 428-494 (524)
229 COG3045 CreA Uncharacterized p 27.5 1.7E+02 0.0038 28.4 6.1 58 1-61 3-62 (165)
230 PRK01742 tolB translocation pr 26.6 9.8E+02 0.021 27.1 22.3 183 53-257 168-364 (429)
231 KOG0301 Phospholipase A2-activ 26.6 5.7E+02 0.012 31.0 11.3 94 55-160 192-286 (745)
232 KOG0308 Conserved WD40 repeat- 25.9 3.9E+02 0.0084 32.1 9.7 100 55-163 184-286 (735)
233 PF14339 DUF4394: Domain of un 25.4 2.2E+02 0.0047 30.1 7.0 88 26-117 9-106 (236)
234 PF08553 VID27: VID27 cytoplas 25.2 3E+02 0.0064 34.3 9.2 63 53-117 542-608 (794)
235 KOG1240 Protein kinase contain 24.8 4E+02 0.0086 34.5 10.0 71 55-125 1165-1238(1431)
236 KOG0643 Translation initiation 24.7 9.1E+02 0.02 26.1 20.1 150 93-257 19-180 (327)
237 PF01453 B_lectin: D-mannose b 24.7 4.5E+02 0.0097 24.1 8.4 59 53-122 19-78 (114)
238 TIGR00548 lolB outer membrane 24.6 1.3E+02 0.0029 30.7 5.3 58 53-118 51-108 (202)
239 KOG0292 Vesicle coat complex C 24.0 1.5E+03 0.033 28.6 25.4 172 98-313 219-398 (1202)
240 PF14583 Pectate_lyase22: Olig 23.3 2.6E+02 0.0055 31.7 7.6 64 53-119 47-115 (386)
241 COG4447 Uncharacterized protei 22.7 7.8E+02 0.017 26.8 10.4 173 55-242 140-322 (339)
242 KOG1273 WD40 repeat protein [G 21.9 1.1E+03 0.024 26.1 17.5 118 51-174 75-195 (405)
243 KOG0650 WD40 repeat nucleolar 21.9 2.7E+02 0.0058 33.1 7.4 31 98-128 414-444 (733)
244 KOG2110 Uncharacterized conser 21.6 1.2E+03 0.026 26.3 15.9 146 53-211 97-249 (391)
245 COG3292 Predicted periplasmic 21.3 3E+02 0.0064 32.7 7.6 70 53-129 175-244 (671)
246 KOG4190 Uncharacterized conser 21.1 1.7E+02 0.0037 34.1 5.6 146 100-257 799-950 (1034)
247 KOG2395 Protein involved in va 20.8 1.4E+03 0.03 27.2 12.6 115 95-216 344-464 (644)
248 COG4946 Uncharacterized protei 20.6 1.4E+03 0.03 26.7 24.7 233 92-356 232-479 (668)
249 PF14783 BBS2_Mid: Ciliary BBS 20.6 6.1E+02 0.013 23.5 8.2 68 95-174 14-81 (111)
250 PF08894 DUF1838: Protein of u 20.5 72 0.0016 33.4 2.4 67 700-769 24-90 (238)
251 KOG0273 Beta-transducin family 20.1 1.4E+03 0.03 26.6 20.6 98 153-257 246-350 (524)
252 PF14339 DUF4394: Domain of un 20.1 1E+03 0.023 25.1 17.8 114 96-218 39-161 (236)
No 1
>KOG2103 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=1.5e-114 Score=968.50 Aligned_cols=705 Identities=34% Similarity=0.482 Sum_probs=553.4
Q ss_pred HhcccCccceeeccccceeEEEeccCceeeeeeeeeccCCCEEEEEeCCCEEEEEECcCCccceEEEcCCcceeeeeeee
Q 003792 14 SSCTIPSLSLYEDQVGLMDWHQQYIGKVKHAVFHTQKTGRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIA 93 (795)
Q Consensus 14 ~~~~~~~~Al~edq~G~~dW~~~~vG~~~~~~f~~~~~~~~~v~vat~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~ 93 (795)
+++..+|+|+||||+|++|||++++| ++...|+.-.+..+++||+|++|+||+||.+||++.|||.++.+....+...
T Consensus 9 ~~~~~~~aav~edq~gkfdwr~~~vG-~~k~~~~~~~t~~~rlivsT~~~vlAsL~~~tGei~WRqvl~~~~~~~~~~~- 86 (910)
T KOG2103|consen 9 ALLLYRAAAVYEDQAGKFDWRQQLVG-VKKVNFLVYDTKSKRLIVSTEKGVLASLNLRTGEIIWRQVLEPKTSGLGVPL- 86 (910)
T ss_pred HHHHHHHHHHHHHHhhhcchhhhccc-ceeEEEEeecCCCceEEEEeccchhheecccCCcEEEEEeccCCCcccCcce-
Confidence 33335667999999999999999999 5555566666678999999999999999999999999999998844333211
Q ss_pred eCCEEEEEEccCCeEEEEeCCCCcEeEEEeccCccccCCceeccccccccCCCeEEEEeCCEEEEEECCCCcEEEEEecc
Q 003792 94 LGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSSKGCLHAVSSIDGEILWTRDFA 173 (795)
Q Consensus 94 ~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~~~~~~~s~~~~~~~~~~~~~~~~~V~V~~~g~l~ald~~tG~~~W~~~~~ 173 (795)
- -++|.+|..+|+||.++|.+.|+..+..+ . +...+.. ...+.|+.+ .....|+.+|.+..+
T Consensus 87 -~---~~iS~dg~~lr~wn~~~g~l~~~i~l~~g-~-~~~~~~v-------~~~i~v~~g-----~~~~~g~l~w~~~~~ 148 (910)
T KOG2103|consen 87 -T---NTISVDGRYLRSWNTNNGILDWEIELADG-F-KGLLLEV-------NKGIAVLNG-----HTRKFGELKWVESFS 148 (910)
T ss_pred -e---EEEccCCcEEEeecCCCceeeeecccccc-c-ceeEEEE-------ccceEEEcc-----eeccccceeehhhcc
Confidence 1 15788899999999999999999999876 3 2222221 222333333 667889999999887
Q ss_pred CcceeeeeEEEEecCCEEEEEEecCCceeEEEEEEcCCCcee-eeeeeeccCCcccceEEecCcEEEEEECCCCeEEEEE
Q 003792 174 AESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELL-NHETAAFSGGFVGDVALVSSDTLVTLDTTRSILVTVS 252 (795)
Q Consensus 174 ~~~~~~~~vv~s~~~~~Vyvv~~~g~~~~~v~ald~~tG~~~-w~~~v~~~~~~~~~~~~vg~~~lv~~d~~~~~L~v~~ 252 (795)
.......|.+.+...+.+|++++--.++..|.+++..+|... |+.++..|+.-...|.-+.+-+++|.+ |.+...|
T Consensus 149 ~~~~~~~q~~~~~~t~vvy~~~~l~~s~~~V~~~~~~~g~v~~~~~~v~~pw~~~~~c~~~k~~vl~~s~---g~l~s~d 225 (910)
T KOG2103|consen 149 ISIEEDLQDAKIYGTDVVYVLGLLKRSGSCVQQVFSDDGEVTGPQSTVLGPWFKVLSCSTDKEVVLVCSN---GTLISLD 225 (910)
T ss_pred ccchhHHHHhhhccCcEEEEEEEEecCCceEEEEEccCCcEecceeeeecCcccccccccccceEEEcCC---CCeEEEE
Confidence 655444554445678889999987666678999999999999 777777786544456555556788885 4788888
Q ss_pred eecCeeeeEEEeecccCCCCCCceEEeecCCcc-eeEEEecCcEEEEEEecCCcEEEEEeecCcceeeeeeeecCCceEE
Q 003792 253 FKNRKIAFQETHLSNLGEDSSGMVEILPSSLTG-MFTVKINNYKLFIRLTSEDKLEVVHKVDHETVVSDALVFSEGKEAF 331 (795)
Q Consensus 253 l~sg~~~~~~~~l~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~~~~~~~~~~~~ 331 (795)
+..++....+... +++-. +.| ...+..++|..++.+++.|...++......-..+.+++..++..++
T Consensus 226 i~~~~~~~~q~~~-----------e~l~~-l~g~~i~~~g~~~~~~V~V~s~~~~~v~~~~~~e~~lsdsl~~~~d~e~~ 293 (910)
T KOG2103|consen 226 ISSQKVQISQLLA-----------EILLP-LTGDLILLDGNKHTAMVSVNSSSNHWVYLFCRSEVDLSDSLEAGGDTEAS 293 (910)
T ss_pred EEeeccchhhhhh-----------hhhhc-cCCceEEecCCCceeEEEEecCCCeEEEeecccceeeccccccccccccc
Confidence 8876521111111 11110 111 3444555577888988777766654433222334444455566666
Q ss_pred EEEEecCceEEEEEeeeeeeecCccceeeeeccCCceeeEEEEEEEEecCCCceEEEEEEEcCCcEEEEECCeEE-EEec
Q 003792 332 AVVEHGGSKVDITVKPGQDWNNNLVQESIEMDHQRGLVHKVFINNYLRTDRSHGFRALIVMEDHSLLLVQQGKIV-WNRE 410 (795)
Q Consensus 332 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~l~~t~d~~~~l~~~g~~~-WtRe 410 (795)
.++.+..+.....++-++.......+....++...+.|+.+.. +..++++.+||++++++|+.+.+.|||.+. |+||
T Consensus 294 ~si~~~ss~~~~~V~~vn~l~~~~~~~~~~~~~~l~~p~~F~~--~~~~~~e~~~~al~~~~d~~~~~~qng~i~~WsRE 371 (910)
T KOG2103|consen 294 KSIHPESSYLFDQVFIVNNLYLVLDAQSILLEQKLSRPEVFGT--FEYFDREIGALALVVNDDHSLLFLQNGLILVWSRE 371 (910)
T ss_pred eeeecccchhhheeeehhhhhhcchhhhhhhhcccCcchhcce--eEEeccccceEEEEEecCceEEEEeCcceEEeehh
Confidence 6655554321111221221111112223344455566644332 444555669999999999999999998877 9999
Q ss_pred cccccceeEEEEeCCCCcccchhhhhhhhhh----hhHHHHHH-hhhhccccCChhhHHHHhh-------cc-ccccccc
Q 003792 411 DALASIIDVTTSELPVEKEGVSVAKVEHSLF----EWLKGHML-KLKGTLMLASPEDVAAIQA-------IR-LKSSEKS 477 (795)
Q Consensus 411 EsLa~i~~~~~vdlp~~~~~~~~~~le~e~~----~~~~~~~~-Rl~~~~~~~~~~~~~~l~~-------~~-~~~~~~~ 477 (795)
|+||++++++|+|||++++ ++.+|.||. +++++||+ |+.+ |+.+|++ .+ ++++.++
T Consensus 372 EsLa~vvd~~~vdlpLs~~---~~~~e~e~~~~~~~~l~~afl~R~~t--------q~~ql~~~~~h~~~~~~~~s~~~n 440 (910)
T KOG2103|consen 372 ESLANVVDVEMVDLPLSRD---QGLLEDEFEDKESNSLWGAFLKRLTT--------QFNQLINLLKHNQGLPTPLSALKN 440 (910)
T ss_pred hhhhhhccceeeccccccc---hhhHHHHhhccccchHHHHHHHHHHH--------HHHHHHHHHHhhhccCCCcccccc
Confidence 9999999999999999998 667777763 36999999 9999 8888766 22 4455566
Q ss_pred c-ccccCCCceEEEEEEecCceEEEEECCCCcEEEEEecccCCCCCCCceee-EEeeecCcccCCCCCCeEEEEEEeCCC
Q 003792 478 K-MTRDHNGFRKLLIVLTKARKIFALHSGDGRVVWSLLLHKSEACDSPTELN-LYQWQTPHHHAMDENPSVLVVGRCGVS 555 (795)
Q Consensus 478 ~-~~rD~FGf~Klivv~T~~Gkl~alds~~G~i~W~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~vv~~~~~~ 555 (795)
+ +.||.||||||||++|++|||||||+.+|+++|++.+++... +++.++ ++|+..+||| +++.|.|+++++
T Consensus 441 ~~l~rD~Fgl~K~iIvlT~tGkiFglds~~G~i~Wkl~L~~~~~--~~e~v~l~vqr~~~H~~---~d~~~svlf~~k-- 513 (910)
T KOG2103|consen 441 KDLSRDKFGLRKMIIVLTSTGKIFGLDSVDGQIHWKLWLPNVQQ--NPEGVKLFVQRTTAHFP---LDEDPSVLFVHK-- 513 (910)
T ss_pred cceeecccCceeEEEEEecCceEEEEEcCCCeEEEEEecCcccC--CcccceEEEEeccccCC---CCCCCeEEEEec--
Confidence 6 999999999999999999999999999999999999997432 456899 7899999998 788888888886
Q ss_pred CCCCcEEEEEEccCCceecccccccceeEEEeecccCCccceEEEEEcCCCceEEccCChhhhhhhhhcccceEEEEEEc
Q 003792 556 SKAPAILSFVDTYTGKELNSFDLVHSAVQVMPLPFTDSTEQRLHLLVDDDRRIHLYPKTSEAISIFQQEFSNIYWYSVEA 635 (795)
Q Consensus 556 ~~~~~~~~~~n~~tG~~~~~~~l~~~~~~~~~lp~~~~~~~~~~~l~d~~~~v~~~P~~~~~~~~~~~~~~~~~~~~~d~ 635 (795)
.++++++|.|||++|++.++.+++++++|.++||.++.++++.++++|+.+.+++||.+.+.+..++++++++|+|++|.
T Consensus 514 ~s~~gvly~fn~~~Gkv~s~~~l~~~v~q~sllp~~~~d~~~~illidd~~~v~l~P~~~~~l~~~~~~a~s~y~Yt~e~ 593 (910)
T KOG2103|consen 514 GSGNGVLYEFNPITGKVISRSPLDYRVKQLSLLPVTEHDHQYLILLIDDHLKVKLYPGTSTDLEIVANEASSIYLYTVEA 593 (910)
T ss_pred cCCCeEEEEEecCcceeeecCccCCceeeEEeccccccccceeEEEecccceEEecCCCcccchhhhhccCccEEEEEEc
Confidence 58899999999999999998889999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCeEEEEEEeecCCCcccccccceeeEeEEEEcCCCCceEEEEeeccCCcccccceeeecCCeeEeeccCCceEEEEEE
Q 003792 636 DNGIIKGHAVKSKCAGEVLDDFCFETRVLWSIIFPMESEKIIAAVSRKQNEVVHTQAKVTSEQDVMYKYISKNLLFVATV 715 (795)
Q Consensus 636 ~~~~l~G~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~e~Iv~~~~r~~~e~v~S~g~VLgDRsVLYKYLNPNL~~v~t~ 715 (795)
++|.|+||.++.+ ++..++|+.++|++.|+||++..|+++|+|||+|||||||+||||||||||+||+|.
T Consensus 594 ~~~~i~Gy~i~~~----------lT~~~~W~~~l~~e~e~IIav~~r~p~e~VhSqGrVlgdrsVlYKYlnPNL~A~~t~ 663 (910)
T KOG2103|consen 594 DTGGIYGYIIKAD----------LTTTQTWKKNLPSEKEKIIAVKGRNPNEHVHSQGRVLGDRSVLYKYLNPNLAAVATA 663 (910)
T ss_pred ccCcEEEEEEecc----------cceeeeeeeccCchhheeeEeccCCcchheeecceecccceeeeeccCcchhheeec
Confidence 9999999999844 578899999999777999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCCcEEEEEEEEceeeeEEEEEEeCCCCCCceEEEEecEEEEEEEeCCcceEEEEEEEEccCcccc
Q 003792 716 APKASGHIGSADPDEAWLVVYLIDTITGRILHRMTHHGAQGPVHAVLSENWVVYHYFNLRAHRYEMSVTEIYDQSRAV 793 (795)
Q Consensus 716 ~~~~~~~~g~~~~~~~~l~vyLiD~VTG~il~s~~h~~~~~pv~~v~~ENWvvYsy~~~~~~~~~i~vvELyE~~~~~ 793 (795)
++++ +++ .++||||+|||+|+|+++|+++++|||+||||||+||||||++.+|+|++|+|||||+++.
T Consensus 664 ~~~~-------~~~---~~~~LiD~VTG~Ivht~~h~k~~~PvhiVfSENWvvYsYfs~k~~rteltvvELYEgs~~~ 731 (910)
T KOG2103|consen 664 NPDD-------HHE---TFLYLIDTVTGSIVHTQSHQKARGPVHIVFSENWVVYSYFSDKARRTELTVVELYEGSEQD 731 (910)
T ss_pred CcCC-------cee---EEEEEEeeeeeEEEEeeehhhhcCceEEEEecceEEEEEeccccccceEEEEEEecCCccc
Confidence 9983 221 1569999999999999999999999999999999999999999999999999999998753
No 2
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=99.88 E-value=3.7e-20 Score=208.54 Aligned_cols=241 Identities=20% Similarity=0.307 Sum_probs=166.8
Q ss_pred ChHHHHHHHHHHHHhcccCccceeec---------------cccceeEEEeccCceeeeeee--eeccCCCEEEEEeCCC
Q 003792 1 MAIRFIILTLLFLSSCTIPSLSLYED---------------QVGLMDWHQQYIGKVKHAVFH--TQKTGRKRVVVSTEEN 63 (795)
Q Consensus 1 ~~~~~~l~~l~~l~~~~~~~~Al~ed---------------q~G~~dW~~~~vG~~~~~~f~--~~~~~~~~v~vat~~g 63 (795)
|-+|.+++..|+++.|++.|+.++-. ..++..|+.++ |......+. .|...+++||+++.+|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~W~~~~-g~g~~~~~~~~sPvv~~~~vy~~~~~g 79 (394)
T PRK11138 1 MQLRKTLLPGLLSVTLLSGCSSFNSEEDVVKMSPLPQVENQFTPTTVWSTSV-GDGVGDYYSRLHPAVAYNKVYAADRAG 79 (394)
T ss_pred CcHHHHHHHHHHHHHHhhhcCCCCCCccccCCCCcccccccCCcceeeEEEc-CCCCccceeeeccEEECCEEEEECCCC
Confidence 56677776666666666666665422 14778999886 443211121 3555689999999999
Q ss_pred EEEEEECcCCccceEEEcCCcce---------eeeeeeeeCCEEEEEEccCCeEEEEeCCCCcEeEEEeccCccccCCce
Q 003792 64 VIASLDLRHGEIFWRHVLGINDV---------VDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLL 134 (795)
Q Consensus 64 ~l~ALn~~tG~ivWR~~l~~~~~---------i~~l~~~~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~~~~~~~s~~~~ 134 (795)
.|+|||++||+++|++.++.... +.+. +...++.|++++.++.++|+|++||+++|+.++.++.. ..+
T Consensus 80 ~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~--ssP 156 (394)
T PRK11138 80 LVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGG-VTVAGGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEAL--SRP 156 (394)
T ss_pred eEEEEECCCCcEeeEEcCCCcccccccccccccccc-cEEECCEEEEEcCCCEEEEEECCCCCCcccccCCCcee--cCC
Confidence 99999999999999999876211 1111 34556778888767799999999999999999876543 222
Q ss_pred eccccccccCCCeEEEE-eCCEEEEEECCCCcEEEEEeccCcceeee-eEEEEecCCEEEEEEecCCceeEEEEEEcCCC
Q 003792 135 LVPTNLKVDKDSLILVS-SKGCLHAVSSIDGEILWTRDFAAESVEVQ-QVIQLDESDQIYVVGYAGSSQFHAYQINAMNG 212 (795)
Q Consensus 135 ~~~~~~~~~~~~~V~V~-~~g~l~ald~~tG~~~W~~~~~~~~~~~~-~vv~s~~~~~Vyvv~~~g~~~~~v~ald~~tG 212 (795)
++. ++.|++. .+|.|+|||.+||+++|+++...+..... ...+...++.+|+.+..| .++++|+++|
T Consensus 157 ~v~-------~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g----~v~a~d~~~G 225 (394)
T PRK11138 157 VVS-------DGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNG----RVSAVLMEQG 225 (394)
T ss_pred EEE-------CCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCC----EEEEEEccCC
Confidence 222 5677776 58999999999999999998754322100 011123567888765555 7999999999
Q ss_pred ceeeeeeeeccCC---------cccceEEecCcEEEEEECCCCeEEEEEeecCee
Q 003792 213 ELLNHETAAFSGG---------FVGDVALVSSDTLVTLDTTRSILVTVSFKNRKI 258 (795)
Q Consensus 213 ~~~w~~~v~~~~~---------~~~~~~~vg~~~lv~~d~~~~~L~v~~l~sg~~ 258 (795)
+.+|+.++..+.+ +..++++.++. +++.+ ..|.++++|+.+|+.
T Consensus 226 ~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~-vy~~~-~~g~l~ald~~tG~~ 278 (394)
T PRK11138 226 QLIWQQRISQPTGATEIDRLVDVDTTPVVVGGV-VYALA-YNGNLVALDLRSGQI 278 (394)
T ss_pred hhhheeccccCCCccchhcccccCCCcEEECCE-EEEEE-cCCeEEEEECCCCCE
Confidence 9999987655422 22345554544 44444 358999999999884
No 3
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.83 E-value=1e-17 Score=187.47 Aligned_cols=217 Identities=16% Similarity=0.283 Sum_probs=152.0
Q ss_pred eeeccccceeEEEeccCceeeee-e-eeeccCCCEEEEEeCCCEEEEEECcCCccceEEEcCCcceeeeeeeeeCCEEEE
Q 003792 23 LYEDQVGLMDWHQQYIGKVKHAV-F-HTQKTGRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVIT 100 (795)
Q Consensus 23 l~edq~G~~dW~~~~vG~~~~~~-f-~~~~~~~~~v~vat~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~ 100 (795)
+..++.+++.|++++ |...... . ..|...+++||+++.+|.|+|+|++||+++|++.++.. +.+. +..+++.++
T Consensus 34 ~~~~~~~~~~W~~~~-~~~~~~~~~~~~p~v~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~--~~~~-p~v~~~~v~ 109 (377)
T TIGR03300 34 FQPTVKVDQVWSASV-GDGVGHYYLRLQPAVAGGKVYAADADGTVVALDAETGKRLWRVDLDER--LSGG-VGADGGLVF 109 (377)
T ss_pred ccccCcceeeeEEEc-CCCcCccccccceEEECCEEEEECCCCeEEEEEccCCcEeeeecCCCC--cccc-eEEcCCEEE
Confidence 345677999999986 4432111 1 23555688999999999999999999999999999875 3333 345677888
Q ss_pred EEccCCeEEEEeCCCCcEeEEEeccCccccCCceeccccccccCCCeEEEE-eCCEEEEEECCCCcEEEEEeccCcceee
Q 003792 101 LSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVS-SKGCLHAVSSIDGEILWTRDFAAESVEV 179 (795)
Q Consensus 101 Vs~~g~~v~A~d~~tG~llWe~~~~~~~~s~~~~~~~~~~~~~~~~~V~V~-~~g~l~ald~~tG~~~W~~~~~~~~~~~ 179 (795)
+++.++.+++||+.||+++|+..+..+.. ..+++ . ++.+++. .+|.|+++|.++|+++|+++...+....
T Consensus 110 v~~~~g~l~ald~~tG~~~W~~~~~~~~~--~~p~v------~-~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~ 180 (377)
T TIGR03300 110 VGTEKGEVIALDAEDGKELWRAKLSSEVL--SPPLV------A-NGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTL 180 (377)
T ss_pred EEcCCCEEEEEECCCCcEeeeeccCceee--cCCEE------E-CCEEEEECCCCeEEEEEcCCCceeeEEccCCCceee
Confidence 87767799999999999999998876543 11222 2 5667776 5899999999999999999876543211
Q ss_pred ee-EEEEecCCEEEEEEecCCceeEEEEEEcCCCceeeeeeeeccCC---------cccceEEecCcEEEEEECCCCeEE
Q 003792 180 QQ-VIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAFSGG---------FVGDVALVSSDTLVTLDTTRSILV 249 (795)
Q Consensus 180 ~~-vv~s~~~~~Vyvv~~~g~~~~~v~ald~~tG~~~w~~~v~~~~~---------~~~~~~~vg~~~lv~~d~~~~~L~ 249 (795)
.. ..+...++.+|+....| +++++|++||+.+|+..+..+.+ ....+++ .++.+++.+ ..|.++
T Consensus 181 ~~~~sp~~~~~~v~~~~~~g----~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~-~~~~vy~~~-~~g~l~ 254 (377)
T TIGR03300 181 RGSASPVIADGGVLVGFAGG----KLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV-DGGQVYAVS-YQGRVA 254 (377)
T ss_pred cCCCCCEEECCEEEEECCCC----EEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE-ECCEEEEEE-cCCEEE
Confidence 00 11123456777543334 89999999999999987654421 1223444 344444454 357899
Q ss_pred EEEeecCee
Q 003792 250 TVSFKNRKI 258 (795)
Q Consensus 250 v~~l~sg~~ 258 (795)
++++++|++
T Consensus 255 a~d~~tG~~ 263 (377)
T TIGR03300 255 ALDLRSGRV 263 (377)
T ss_pred EEECCCCcE
Confidence 999999873
No 4
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=99.76 E-value=2.3e-16 Score=177.85 Aligned_cols=216 Identities=15% Similarity=0.253 Sum_probs=146.6
Q ss_pred ccccceeEEEeccCceee------eee-eeeccCCCEEEEEeCCCEEEEEECcCCccceEEEcCCcceeeeeeeeeCCEE
Q 003792 26 DQVGLMDWHQQYIGKVKH------AVF-HTQKTGRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYV 98 (795)
Q Consensus 26 dq~G~~dW~~~~vG~~~~------~~f-~~~~~~~~~v~vat~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~ 98 (795)
.+.|+..|++++-+.... ..+ ..|...+++||+++.+|.|+|||++||+++|++.++.. +... +...++.
T Consensus 86 ~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~--~~ss-P~v~~~~ 162 (394)
T PRK11138 86 ADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTKVAGE--ALSR-PVVSDGL 162 (394)
T ss_pred CCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCcccccCCCc--eecC-CEEECCE
Confidence 346999999987542110 011 12445588999999999999999999999999998654 3333 3445667
Q ss_pred EEEEccCCeEEEEeCCCCcEeEEEeccCccccCCceeccccccccCCCeEEEE-eCCEEEEEECCCCcEEEEEeccCcce
Q 003792 99 ITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVS-SKGCLHAVSSIDGEILWTRDFAAESV 177 (795)
Q Consensus 99 V~Vs~~g~~v~A~d~~tG~llWe~~~~~~~~s~~~~~~~~~~~~~~~~~V~V~-~~g~l~ald~~tG~~~W~~~~~~~~~ 177 (795)
+++...++.++|+|++||+++|+.....+.........| ... ++.+++. .+|.++++|..+|+++|+.+...+..
T Consensus 163 v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP---~v~-~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~ 238 (394)
T PRK11138 163 VLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAP---ATA-FGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTG 238 (394)
T ss_pred EEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCC---EEE-CCEEEEEcCCCEEEEEEccCChhhheeccccCCC
Confidence 777766679999999999999999876442200000111 122 4566665 58999999999999999987543210
Q ss_pred --eee-----eEEEEecCCEEEEEEecCCceeEEEEEEcCCCceeeeeeeeccCCcccceEEecCcEEEEEECCCCeEEE
Q 003792 178 --EVQ-----QVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAFSGGFVGDVALVSSDTLVTLDTTRSILVT 250 (795)
Q Consensus 178 --~~~-----~vv~s~~~~~Vyvv~~~g~~~~~v~ald~~tG~~~w~~~v~~~~~~~~~~~~vg~~~lv~~d~~~~~L~v 250 (795)
... ...+...++.+|+.+..| .++|+|++||+.+|+.....+. .+++ .++.+++.+ .+|.+++
T Consensus 239 ~~~~~~~~~~~~sP~v~~~~vy~~~~~g----~l~ald~~tG~~~W~~~~~~~~----~~~~-~~~~vy~~~-~~g~l~a 308 (394)
T PRK11138 239 ATEIDRLVDVDTTPVVVGGVVYALAYNG----NLVALDLRSGQIVWKREYGSVN----DFAV-DGGRIYLVD-QNDRVYA 308 (394)
T ss_pred ccchhcccccCCCcEEECCEEEEEEcCC----eEEEEECCCCCEEEeecCCCcc----CcEE-ECCEEEEEc-CCCeEEE
Confidence 000 011224688999887766 7999999999999998654321 2333 334444444 3588999
Q ss_pred EEeecCee
Q 003792 251 VSFKNRKI 258 (795)
Q Consensus 251 ~~l~sg~~ 258 (795)
++..+|++
T Consensus 309 ld~~tG~~ 316 (394)
T PRK11138 309 LDTRGGVE 316 (394)
T ss_pred EECCCCcE
Confidence 99988873
No 5
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=99.73 E-value=1.3e-15 Score=158.51 Aligned_cols=216 Identities=20% Similarity=0.320 Sum_probs=144.2
Q ss_pred eeccccceeEEEeccCceeeeeeeeeccCCCEEEEEeCCCEEEEEECcCCccceEEEcCCcceeeeeeeeeCCEEEEEEc
Q 003792 24 YEDQVGLMDWHQQYIGKVKHAVFHTQKTGRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSS 103 (795)
Q Consensus 24 ~edq~G~~dW~~~~vG~~~~~~f~~~~~~~~~v~vat~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~ 103 (795)
+..+.|+..|+.++ +.........+...++.+|+++.++.|+|+|++||+++|++.++.+ +...+...++.+++.+.
T Consensus 8 ~d~~tG~~~W~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~--~~~~~~~~~~~v~v~~~ 84 (238)
T PF13360_consen 8 LDPRTGKELWSYDL-GPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGP--ISGAPVVDGGRVYVGTS 84 (238)
T ss_dssp EETTTTEEEEEEEC-SSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSC--GGSGEEEETTEEEEEET
T ss_pred EECCCCCEEEEEEC-CCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeecccc--ccceeeecccccccccc
Confidence 34468999999987 4321111211223488999999999999999999999999999655 22222334555544444
Q ss_pred cCCeEEEEeCCCCcEeEEE-eccCccccCCceeccccccccCCCeEEEEe-CCEEEEEECCCCcEEEEEeccCcce-e--
Q 003792 104 DGSTLRAWNLPDGQMVWES-FLRGSKHSKPLLLVPTNLKVDKDSLILVSS-KGCLHAVSSIDGEILWTRDFAAESV-E-- 178 (795)
Q Consensus 104 ~g~~v~A~d~~tG~llWe~-~~~~~~~s~~~~~~~~~~~~~~~~~V~V~~-~g~l~ald~~tG~~~W~~~~~~~~~-~-- 178 (795)
++.++++|+.||+++|+. ....+.........+ ... ++.+++.. ++.|+++|++||+++|+++...+.. .
T Consensus 85 -~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~ 159 (238)
T PF13360_consen 85 -DGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSP---AVD-GDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPI 159 (238)
T ss_dssp -TSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEE---EEE-TTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--E
T ss_pred -eeeeEecccCCcceeeeeccccccccccccccCc---eEe-cCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcce
Confidence 459999999999999995 433222100000111 222 45666665 9999999999999999998865331 1
Q ss_pred ------eeeEEEEecCCEEEEEEecCCceeEEEEEEcCCCceeeeeeeeccCCcccceEEecCcEEEEEECCCCeEEEEE
Q 003792 179 ------VQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAFSGGFVGDVALVSSDTLVTLDTTRSILVTVS 252 (795)
Q Consensus 179 ------~~~vv~s~~~~~Vyvv~~~g~~~~~v~ald~~tG~~~w~~~v~~~~~~~~~~~~vg~~~lv~~d~~~~~L~v~~ 252 (795)
..++ ...++.+|+.+..| .+.++|..+|+.+|+.... ... ..+...++.+++.+ ..+.++++|
T Consensus 160 ~~~~~~~~~~--~~~~~~v~~~~~~g----~~~~~d~~tg~~~w~~~~~---~~~-~~~~~~~~~l~~~~-~~~~l~~~d 228 (238)
T PF13360_consen 160 SSFSDINGSP--VISDGRVYVSSGDG----RVVAVDLATGEKLWSKPIS---GIY-SLPSVDGGTLYVTS-SDGRLYALD 228 (238)
T ss_dssp EEETTEEEEE--ECCTTEEEEECCTS----SEEEEETTTTEEEEEECSS----EC-ECEECCCTEEEEEE-TTTEEEEEE
T ss_pred eeecccccce--EEECCEEEEEcCCC----eEEEEECCCCCEEEEecCC---Ccc-CCceeeCCEEEEEe-CCCEEEEEE
Confidence 1122 24567899876665 4788899999999966422 221 22334667777777 579999999
Q ss_pred eecCee
Q 003792 253 FKNRKI 258 (795)
Q Consensus 253 l~sg~~ 258 (795)
+.+|++
T Consensus 229 ~~tG~~ 234 (238)
T PF13360_consen 229 LKTGKV 234 (238)
T ss_dssp TTTTEE
T ss_pred CCCCCE
Confidence 999984
No 6
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.71 E-value=6.2e-15 Score=165.00 Aligned_cols=211 Identities=19% Similarity=0.289 Sum_probs=144.3
Q ss_pred cccceeEEEeccCceeeeeeeeeccCCCEEEEEeCCCEEEEEECcCCccceEEEcCCcceeeeeeeeeCCEEEEEEccCC
Q 003792 27 QVGLMDWHQQYIGKVKHAVFHTQKTGRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGS 106 (795)
Q Consensus 27 q~G~~dW~~~~vG~~~~~~f~~~~~~~~~v~vat~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~~g~ 106 (795)
+.|+..|++++-+... ..|..+++++|+++.+|.|+|||++||+++|++.+... +... +...++.+++...++
T Consensus 83 ~tG~~~W~~~~~~~~~----~~p~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~--~~~~-p~v~~~~v~v~~~~g 155 (377)
T TIGR03300 83 ETGKRLWRVDLDERLS----GGVGADGGLVFVGTEKGEVIALDAEDGKELWRAKLSSE--VLSP-PLVANGLVVVRTNDG 155 (377)
T ss_pred cCCcEeeeecCCCCcc----cceEEcCCEEEEEcCCCEEEEEECCCCcEeeeeccCce--eecC-CEEECCEEEEECCCC
Confidence 5799999998755432 23445688999999999999999999999999988654 3332 234556777766667
Q ss_pred eEEEEeCCCCcEeEEEeccCccccCCceeccccccccCCCeEEEE-eCCEEEEEECCCCcEEEEEeccCcce--eee---
Q 003792 107 TLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVS-SKGCLHAVSSIDGEILWTRDFAAESV--EVQ--- 180 (795)
Q Consensus 107 ~v~A~d~~tG~llWe~~~~~~~~s~~~~~~~~~~~~~~~~~V~V~-~~g~l~ald~~tG~~~W~~~~~~~~~--~~~--- 180 (795)
.+++||+.+|+++|+.....+.........+ ... ++.+++. .+|.++++|.++|+.+|+.+...+.. ...
T Consensus 156 ~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp---~~~-~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~ 231 (377)
T TIGR03300 156 RLTALDAATGERLWTYSRVTPALTLRGSASP---VIA-DGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLV 231 (377)
T ss_pred eEEEEEcCCCceeeEEccCCCceeecCCCCC---EEE-CCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhh
Confidence 9999999999999999876543200000111 112 4556665 47999999999999999986543210 000
Q ss_pred --eEEEEecCCEEEEEEecCCceeEEEEEEcCCCceeeeeeeeccCCcccceEEecCcEEEEEECCCCeEEEEEeecCee
Q 003792 181 --QVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAFSGGFVGDVALVSSDTLVTLDTTRSILVTVSFKNRKI 258 (795)
Q Consensus 181 --~vv~s~~~~~Vyvv~~~g~~~~~v~ald~~tG~~~w~~~v~~~~~~~~~~~~vg~~~lv~~d~~~~~L~v~~l~sg~~ 258 (795)
...+...++.+|+.+..| .++++|++||+.+|+...... ..+.+ .++.+++.+ .+|.++++|..+|++
T Consensus 232 ~~~~~p~~~~~~vy~~~~~g----~l~a~d~~tG~~~W~~~~~~~----~~p~~-~~~~vyv~~-~~G~l~~~d~~tG~~ 301 (377)
T TIGR03300 232 DVDGDPVVDGGQVYAVSYQG----RVAALDLRSGRVLWKRDASSY----QGPAV-DDNRLYVTD-ADGVVVALDRRSGSE 301 (377)
T ss_pred ccCCccEEECCEEEEEEcCC----EEEEEECCCCcEEEeeccCCc----cCceE-eCCEEEEEC-CCCeEEEEECCCCcE
Confidence 001124678999877666 799999999999999863221 12333 334444444 468899999988873
No 7
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=99.64 E-value=1.4e-14 Score=167.61 Aligned_cols=220 Identities=15% Similarity=0.150 Sum_probs=141.7
Q ss_pred cccceeEEEeccCceeeeeeeeeccCCCEEEEEeCCCEEEEEECcCCccceEEEcCCcc-----eeeeeeeeeCC-EEEE
Q 003792 27 QVGLMDWHQQYIGKVKHAVFHTQKTGRKRVVVSTEENVIASLDLRHGEIFWRHVLGIND-----VVDGIDIALGK-YVIT 100 (795)
Q Consensus 27 q~G~~dW~~~~vG~~~~~~f~~~~~~~~~v~vat~~g~l~ALn~~tG~ivWR~~l~~~~-----~i~~l~~~~g~-~~V~ 100 (795)
+.+++.|+.+. |.. ......|...+++||+++.++.|+|||++||+++|++.+.... .+..-.+...+ +.|+
T Consensus 37 ~~~~~~W~~~~-~~~-~~~~~sPvv~~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~ 114 (488)
T cd00216 37 KKLKVAWTFST-GDE-RGQEGTPLVVDGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVF 114 (488)
T ss_pred hcceeeEEEEC-CCC-CCcccCCEEECCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEE
Confidence 35779999987 310 0112234455899999999999999999999999999886541 00000113334 7888
Q ss_pred EEccCCeEEEEeCCCCcEeEEEeccCcc-----ccCCceeccccccccCCCeEEEEe----------CCEEEEEECCCCc
Q 003792 101 LSSDGSTLRAWNLPDGQMVWESFLRGSK-----HSKPLLLVPTNLKVDKDSLILVSS----------KGCLHAVSSIDGE 165 (795)
Q Consensus 101 Vs~~g~~v~A~d~~tG~llWe~~~~~~~-----~s~~~~~~~~~~~~~~~~~V~V~~----------~g~l~ald~~tG~ 165 (795)
++..++.|+|+|++||+++|++...... . ...+.+ . ++.+++.+ +|.|+|||++||+
T Consensus 115 v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i-~ssP~v------~-~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~ 186 (488)
T cd00216 115 FGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTM-TGAPTI------V-KKLVIIGSSGAEFFACGVRGALRAYDVETGK 186 (488)
T ss_pred EecCCCeEEEEECCCCCEeeeecCCCCcCcceEe-cCCCEE------E-CCEEEEeccccccccCCCCcEEEEEECCCCc
Confidence 8777789999999999999999987642 1 111122 2 46666643 4789999999999
Q ss_pred EEEEEeccCcce--e-----------------eeeEEEEecCCEEEEEEecCC--------------ceeEEEEEEcCCC
Q 003792 166 ILWTRDFAAESV--E-----------------VQQVIQLDESDQIYVVGYAGS--------------SQFHAYQINAMNG 212 (795)
Q Consensus 166 ~~W~~~~~~~~~--~-----------------~~~vv~s~~~~~Vyvv~~~g~--------------~~~~v~ald~~tG 212 (795)
++|+++...+.. . ..........+.||+.+.++. ..-.++|||++||
T Consensus 187 ~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG 266 (488)
T cd00216 187 LLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTG 266 (488)
T ss_pred eeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCC
Confidence 999997742210 0 001111124678887543320 1126999999999
Q ss_pred ceeeeeeeeccC----CcccceEEe-----cCc---EEEEEECCCCeEEEEEeecCe
Q 003792 213 ELLNHETAAFSG----GFVGDVALV-----SSD---TLVTLDTTRSILVTVSFKNRK 257 (795)
Q Consensus 213 ~~~w~~~v~~~~----~~~~~~~~v-----g~~---~lv~~d~~~~~L~v~~l~sg~ 257 (795)
+++|+++...+. .....+.+. ++. ++++. ..+|.++++|..+|+
T Consensus 267 ~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g-~~~G~l~ald~~tG~ 322 (488)
T cd00216 267 KVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHA-PKNGFFYVLDRTTGK 322 (488)
T ss_pred CEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEE-CCCceEEEEECCCCc
Confidence 999999754331 111122222 111 33333 356889999999988
No 8
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=99.63 E-value=3.7e-14 Score=164.12 Aligned_cols=229 Identities=10% Similarity=0.149 Sum_probs=143.8
Q ss_pred ccccceeEEEeccCcee--eeeeeeeccCCCEEEEEeC---------CCEEEEEECcCCccceEEEcCCcce--------
Q 003792 26 DQVGLMDWHQQYIGKVK--HAVFHTQKTGRKRVVVSTE---------ENVIASLDLRHGEIFWRHVLGINDV-------- 86 (795)
Q Consensus 26 dq~G~~dW~~~~vG~~~--~~~f~~~~~~~~~v~vat~---------~g~l~ALn~~tG~ivWR~~l~~~~~-------- 86 (795)
.+.|+..|++++-+... ...-..|...++.+|+++. .|.|+|||++||+++|++.+..+..
T Consensus 127 ~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~ 206 (488)
T cd00216 127 AETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGP 206 (488)
T ss_pred CCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCC
Confidence 56799999998755421 1111224444788998874 5789999999999999998853210
Q ss_pred -----------eeeeeeee--CCEEEEEEccCC------------------eEEEEeCCCCcEeEEEeccCccc-----c
Q 003792 87 -----------VDGIDIAL--GKYVITLSSDGS------------------TLRAWNLPDGQMVWESFLRGSKH-----S 130 (795)
Q Consensus 87 -----------i~~l~~~~--g~~~V~Vs~~g~------------------~v~A~d~~tG~llWe~~~~~~~~-----s 130 (795)
+-.. +.. .++.||++..++ .|+|+|++||+++|+++...... .
T Consensus 207 ~~~~~~~~g~~vw~~-pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~ 285 (488)
T cd00216 207 DRQMWGPGGGTSWAS-PTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGP 285 (488)
T ss_pred CcceecCCCCCccCC-eeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccC
Confidence 1011 222 457888875332 79999999999999998653211 0
Q ss_pred CCceeccccccccCC--CeEEEE-eCCEEEEEECCCCcEEEEEeccCcceeeeeEEEEecCCEEEEEEec----------
Q 003792 131 KPLLLVPTNLKVDKD--SLILVS-SKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYA---------- 197 (795)
Q Consensus 131 ~~~~~~~~~~~~~~~--~~V~V~-~~g~l~ald~~tG~~~W~~~~~~~~~~~~~vv~s~~~~~Vyvv~~~---------- 197 (795)
..+.+.... ..++. ..|++. .+|.|+|||++||+++|+.+...... +..++.||+.+..
T Consensus 286 s~p~~~~~~-~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~~~~-------~~~~~~vyv~~~~~~~~~~~~~~ 357 (488)
T cd00216 286 NQPSLADIK-PKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVEQPM-------AYDPGLVYLGAFHIPLGLPPQKK 357 (488)
T ss_pred CCCeEEecc-ccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeecccc-------ccCCceEEEccccccccCccccc
Confidence 111111100 01111 134554 48999999999999999987642111 1345777774321
Q ss_pred ----CCceeEEEEEEcCCCceeeeeeeecc-------CCcccceEEecCcEEEEEECCCCeEEEEEeecCeeeeEEEee
Q 003792 198 ----GSSQFHAYQINAMNGELLNHETAAFS-------GGFVGDVALVSSDTLVTLDTTRSILVTVSFKNRKIAFQETHL 265 (795)
Q Consensus 198 ----g~~~~~v~ald~~tG~~~w~~~v~~~-------~~~~~~~~~vg~~~lv~~d~~~~~L~v~~l~sg~~~~~~~~l 265 (795)
......++|||+.||+.+|+...... .......+.+.++.+++.+ ..|.|+++|..+|++ .-+..+
T Consensus 358 ~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~-~dG~l~ald~~tG~~-lW~~~~ 434 (488)
T cd00216 358 KRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGA-ADGYFRAFDATTGKE-LWKFRT 434 (488)
T ss_pred CCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEEC-CCCeEEEEECCCCce-eeEEEC
Confidence 01234899999999999999976511 1111233444556666665 468999999999983 434444
No 9
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=99.60 E-value=1.5e-13 Score=142.92 Aligned_cols=181 Identities=19% Similarity=0.300 Sum_probs=119.4
Q ss_pred CCCEEEEEECcCCccceEEEcCCc-ceeeeeeeeeCCEEEEEEccCCeEEEEeCCCCcEeEEEeccCccccCCceecccc
Q 003792 61 EENVIASLDLRHGEIFWRHVLGIN-DVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTN 139 (795)
Q Consensus 61 ~~g~l~ALn~~tG~ivWR~~l~~~-~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~~~~~~~s~~~~~~~~~ 139 (795)
++|.|.|+|+++|+++|+..++.. ...... +...++.++++..++.|++||+.||+++|+..+..+.. .. +..
T Consensus 1 ~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~-~~-~~~--- 74 (238)
T PF13360_consen 1 DDGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPIS-GA-PVV--- 74 (238)
T ss_dssp -TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGG-SG-EEE---
T ss_pred CCCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeecccccc-ce-eee---
Confidence 478999999999999999999543 111111 23355566666556799999999999999999965543 11 222
Q ss_pred ccccCCCeEEEEe-CCEEEEEECCCCcEEEEE-eccCccee-eeeEEEEecCCEEEEEEecCCceeEEEEEEcCCCceee
Q 003792 140 LKVDKDSLILVSS-KGCLHAVSSIDGEILWTR-DFAAESVE-VQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLN 216 (795)
Q Consensus 140 ~~~~~~~~V~V~~-~g~l~ald~~tG~~~W~~-~~~~~~~~-~~~vv~s~~~~~Vyvv~~~g~~~~~v~ald~~tG~~~w 216 (795)
. ++.+++.. ++.|+++|..||+++|+. ....+... .........++.+|+....| .++++|++||+++|
T Consensus 75 ---~-~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g----~l~~~d~~tG~~~w 146 (238)
T PF13360_consen 75 ---D-GGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSG----KLVALDPKTGKLLW 146 (238)
T ss_dssp ---E-TTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCS----EEEEEETTTTEEEE
T ss_pred ---c-ccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccC----cEEEEecCCCcEEE
Confidence 2 57777774 789999999999999994 54422211 11111123577787755444 89999999999999
Q ss_pred eeeeeccCCcc---------cceEEecCcEEEEEECCCCeEEEEEeecCe
Q 003792 217 HETAAFSGGFV---------GDVALVSSDTLVTLDTTRSILVTVSFKNRK 257 (795)
Q Consensus 217 ~~~v~~~~~~~---------~~~~~vg~~~lv~~d~~~~~L~v~~l~sg~ 257 (795)
+..+..+.... +.+++ .++.++..+ ..+.+..+|+.+|+
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~-~~g~~~~~d~~tg~ 194 (238)
T PF13360_consen 147 KYPVGEPRGSSPISSFSDINGSPVI-SDGRVYVSS-GDGRVVAVDLATGE 194 (238)
T ss_dssp EEESSTT-SS--EEEETTEEEEEEC-CTTEEEEEC-CTSSEEEEETTTTE
T ss_pred EeecCCCCCCcceeeecccccceEE-ECCEEEEEc-CCCeEEEEECCCCC
Confidence 99875543221 23333 334443443 34545555988887
No 10
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=99.50 E-value=1.3e-12 Score=151.97 Aligned_cols=219 Identities=17% Similarity=0.185 Sum_probs=139.1
Q ss_pred cceeEEEeccCceeeeeeeeeccCCCEEEEEeCCCEEEEEECcCCccceEEEcCCcceeee--------eeeeeCCEEEE
Q 003792 29 GLMDWHQQYIGKVKHAVFHTQKTGRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDG--------IDIALGKYVIT 100 (795)
Q Consensus 29 G~~dW~~~~vG~~~~~~f~~~~~~~~~v~vat~~g~l~ALn~~tG~ivWR~~l~~~~~i~~--------l~~~~g~~~V~ 100 (795)
.++.|++++ |... .....|...+++||+++..|.|+|||++||+++|++.......+.. -.+...++.|+
T Consensus 47 L~~~W~~~~-g~~~-g~~stPvv~~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~ 124 (527)
T TIGR03075 47 LQPAWTFSL-GKLR-GQESQPLVVDGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVF 124 (527)
T ss_pred ceEEEEEEC-CCCC-CcccCCEEECCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEE
Confidence 447799877 4221 1123344558899999999999999999999999998864321110 00234556777
Q ss_pred EEccCCeEEEEeCCCCcEeEEEeccCccc---cCCceeccccccccCCCeEEEEe-------CCEEEEEECCCCcEEEEE
Q 003792 101 LSSDGSTLRAWNLPDGQMVWESFLRGSKH---SKPLLLVPTNLKVDKDSLILVSS-------KGCLHAVSSIDGEILWTR 170 (795)
Q Consensus 101 Vs~~g~~v~A~d~~tG~llWe~~~~~~~~---s~~~~~~~~~~~~~~~~~V~V~~-------~g~l~ald~~tG~~~W~~ 170 (795)
++..++.|+|+|+.||+++|+........ ....+++ . ++.|++.. +|.|+|||++||+++|++
T Consensus 125 v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v------~-~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~ 197 (527)
T TIGR03075 125 FGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLV------V-KGKVITGISGGEFGVRGYVTAYDAKTGKLVWRR 197 (527)
T ss_pred EEcCCCEEEEEECCCCCEEeecccccccccccccCCcEE------E-CCEEEEeecccccCCCcEEEEEECCCCceeEec
Confidence 77766799999999999999998643211 0111222 2 56677753 589999999999999998
Q ss_pred eccCcce------------ee------------------eeEEEEecCCEEEEEEec-----CC-------ceeEEEEEE
Q 003792 171 DFAAESV------------EV------------------QQVIQLDESDQIYVVGYA-----GS-------SQFHAYQIN 208 (795)
Q Consensus 171 ~~~~~~~------------~~------------------~~vv~s~~~~~Vyvv~~~-----g~-------~~~~v~ald 208 (795)
....+.- ++ ..+..=...+.||+..-. +. +.-.++|||
T Consensus 198 ~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld 277 (527)
T TIGR03075 198 YTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARD 277 (527)
T ss_pred cCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEc
Confidence 6632110 00 001100125577865422 11 123689999
Q ss_pred cCCCceeeeeeeecc--CCc--ccceEEe----cCc---EEEEEECCCCeEEEEEeecCe
Q 003792 209 AMNGELLNHETAAFS--GGF--VGDVALV----SSD---TLVTLDTTRSILVTVSFKNRK 257 (795)
Q Consensus 209 ~~tG~~~w~~~v~~~--~~~--~~~~~~v----g~~---~lv~~d~~~~~L~v~~l~sg~ 257 (795)
++||+..|.++..-. ++. ...++++ ++. .++.. ..+|.++++|=.+|+
T Consensus 278 ~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~-~K~G~~~vlDr~tG~ 336 (527)
T TIGR03075 278 PDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHA-DRNGFFYVLDRTNGK 336 (527)
T ss_pred cccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEe-CCCceEEEEECCCCc
Confidence 999999999975221 222 2244444 222 34444 457899999988887
No 11
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=99.49 E-value=2.5e-12 Score=143.89 Aligned_cols=217 Identities=20% Similarity=0.243 Sum_probs=148.7
Q ss_pred ccccceeEEEeccCceeeeeeeee--ccCCCEEEEEeCCCEEEEEECcCCccceEEEcCC-cceeeeeeeeeCCEEEEEE
Q 003792 26 DQVGLMDWHQQYIGKVKHAVFHTQ--KTGRKRVVVSTEENVIASLDLRHGEIFWRHVLGI-NDVVDGIDIALGKYVITLS 102 (795)
Q Consensus 26 dq~G~~dW~~~~vG~~~~~~f~~~--~~~~~~v~vat~~g~l~ALn~~tG~ivWR~~l~~-~~~i~~l~~~~g~~~V~Vs 102 (795)
...|...|.... +......+..| ...++++|+++.+|.|.|+|+.+|+++|+..+.. ...+.+. +...++.++++
T Consensus 40 ~~~g~~~W~~~~-~~~~~~~~~~~~~~~~dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~-~~~~~G~i~~g 117 (370)
T COG1520 40 NTSGTLLWSVSL-GSGGGGIYAGPAPADGDGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGP-ILGSDGKIYVG 117 (370)
T ss_pred ccCcceeeeeec-ccCccceEeccccEeeCCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCc-eEEeCCeEEEe
Confidence 345888897653 33222334444 5568999999999999999999999999999875 2112222 23446778888
Q ss_pred ccCCeEEEEeCCCCcEeEEEeccC-ccccCCceeccccccccCCCeEEEE-eCCEEEEEECCCCcEEEEEeccCc-ceee
Q 003792 103 SDGSTLRAWNLPDGQMVWESFLRG-SKHSKPLLLVPTNLKVDKDSLILVS-SKGCLHAVSSIDGEILWTRDFAAE-SVEV 179 (795)
Q Consensus 103 ~~g~~v~A~d~~tG~llWe~~~~~-~~~s~~~~~~~~~~~~~~~~~V~V~-~~g~l~ald~~tG~~~W~~~~~~~-~~~~ 179 (795)
+.++.++++|+.||+++|+..... ... ...++ ..++.|++. .+|.++++|..||..+|++..+.+ ....
T Consensus 118 ~~~g~~y~ld~~~G~~~W~~~~~~~~~~-~~~~v-------~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~ 189 (370)
T COG1520 118 SWDGKLYALDASTGTLVWSRNVGGSPYY-ASPPV-------VGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSI 189 (370)
T ss_pred cccceEEEEECCCCcEEEEEecCCCeEE-ecCcE-------EcCcEEEEecCCCeEEEEEccCCcEEEEEecCCcccccc
Confidence 876799999999999999999987 222 11222 226777777 589999999999999999888763 1111
Q ss_pred eeEEEEecCCEEEEEEecCCceeEEEEEEcCCCceeeeeeeeccCC---------cccceEEecCcEEEEEECCCCeEEE
Q 003792 180 QQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAFSGG---------FVGDVALVSSDTLVTLDTTRSILVT 250 (795)
Q Consensus 180 ~~vv~s~~~~~Vyvv~~~g~~~~~v~ald~~tG~~~w~~~v~~~~~---------~~~~~~~vg~~~lv~~d~~~~~L~v 250 (795)
... +....+.+|+.... . .-.++++|+.+|+..|+.+...+.+ +....+++++++ |.-..++.+..
T Consensus 190 ~~~-~~~~~~~vy~~~~~-~-~~~~~a~~~~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~--~~~~~~g~~~~ 264 (370)
T COG1520 190 YGS-PAIASGTVYVGSDG-Y-DGILYALNAEDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGV--YAGSYGGKLLC 264 (370)
T ss_pred ccC-ceeecceEEEecCC-C-cceEEEEEccCCcEeeeeeeecccCcccccccccccCceEEECCcE--EEEecCCeEEE
Confidence 111 12467888875442 1 2279999999999999975544322 222445555554 23334567888
Q ss_pred EEeecCe
Q 003792 251 VSFKNRK 257 (795)
Q Consensus 251 ~~l~sg~ 257 (795)
++..+|+
T Consensus 265 l~~~~G~ 271 (370)
T COG1520 265 LDADTGE 271 (370)
T ss_pred EEcCCCc
Confidence 8888877
No 12
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=99.49 E-value=2.6e-12 Score=153.80 Aligned_cols=208 Identities=14% Similarity=0.170 Sum_probs=129.1
Q ss_pred eccCCCEEEEEeCCCEEEEEECcCCccceEEEcCCccee-------eeee----------------eeeCCEEEEEEccC
Q 003792 49 QKTGRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVV-------DGID----------------IALGKYVITLSSDG 105 (795)
Q Consensus 49 ~~~~~~~v~vat~~g~l~ALn~~tG~ivWR~~l~~~~~i-------~~l~----------------~~~g~~~V~Vs~~g 105 (795)
|...+++||++|..|.|+|||++||+++||+..+..... .+.. +...++.||+++.+
T Consensus 190 Plvvgg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~D 269 (764)
T TIGR03074 190 PLKVGDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSD 269 (764)
T ss_pred CEEECCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCC
Confidence 444588999999999999999999999999988654210 0110 11234577777767
Q ss_pred CeEEEEeCCCCcEeEEEeccCccc-c------CCceeccccccccCCCeEEEEe-----------CCEEEEEECCCCcEE
Q 003792 106 STLRAWNLPDGQMVWESFLRGSKH-S------KPLLLVPTNLKVDKDSLILVSS-----------KGCLHAVSSIDGEIL 167 (795)
Q Consensus 106 ~~v~A~d~~tG~llWe~~~~~~~~-s------~~~~~~~~~~~~~~~~~V~V~~-----------~g~l~ald~~tG~~~ 167 (795)
++|+|+|+.||+++|++...+... . ........+.....++.|++.. +|.|+|+|++||+++
T Consensus 270 g~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~ 349 (764)
T TIGR03074 270 ARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALV 349 (764)
T ss_pred CeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEe
Confidence 899999999999999976543210 0 0000000000111156677752 588999999999999
Q ss_pred EEEeccCccee--------e--------eeEEEEecCCEEEEEEec------C--------CceeEEEEEEcCCCceeee
Q 003792 168 WTRDFAAESVE--------V--------QQVIQLDESDQIYVVGYA------G--------SSQFHAYQINAMNGELLNH 217 (795)
Q Consensus 168 W~~~~~~~~~~--------~--------~~vv~s~~~~~Vyvv~~~------g--------~~~~~v~ald~~tG~~~w~ 217 (795)
|++....+... . .....-...+.+|+-.-. | .+.-.++|||++||+.+|.
T Consensus 350 W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~ 429 (764)
T TIGR03074 350 WAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWV 429 (764)
T ss_pred eEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEE
Confidence 99976422110 0 000001123556652210 1 1235789999999999999
Q ss_pred eeeecc----CCcccceEEec----Cc----EEEEEECCCCeEEEEEeecCe
Q 003792 218 ETAAFS----GGFVGDVALVS----SD----TLVTLDTTRSILVTVSFKNRK 257 (795)
Q Consensus 218 ~~v~~~----~~~~~~~~~vg----~~----~lv~~d~~~~~L~v~~l~sg~ 257 (795)
++..-. .++...++++. ++ .++..+ .+|.++++|-++|+
T Consensus 430 ~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~-K~G~~~vlDr~tG~ 480 (764)
T TIGR03074 430 FQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPT-KQGQIYVLDRRTGE 480 (764)
T ss_pred ecccCCccccccccCCceEEeeecCCCcEeeEEEEEC-CCCEEEEEECCCCC
Confidence 974221 23333444431 23 455554 57899999999988
No 13
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=99.32 E-value=7.5e-11 Score=141.41 Aligned_cols=189 Identities=14% Similarity=0.216 Sum_probs=117.3
Q ss_pred ccccceeEEEeccCceee----------eeeee------------eccCCCEEEEEeCCCEEEEEECcCCccceEEEcCC
Q 003792 26 DQVGLMDWHQQYIGKVKH----------AVFHT------------QKTGRKRVVVSTEENVIASLDLRHGEIFWRHVLGI 83 (795)
Q Consensus 26 dq~G~~dW~~~~vG~~~~----------~~f~~------------~~~~~~~v~vat~~g~l~ALn~~tG~ivWR~~l~~ 83 (795)
.+.|+..|++..-..... +.+.. |...+++||++|.++.|+|||++||+++|++..+.
T Consensus 211 a~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiALDA~TGk~~W~fg~~G 290 (764)
T TIGR03074 211 AATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIALDADTGKLCEDFGNNG 290 (764)
T ss_pred CCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEEEECCCCCEEEEecCCC
Confidence 467999999987332211 11211 23456799999999999999999999999875432
Q ss_pred cc--------------eeeeeeeeeCCEEEEEEcc----------CCeEEEEeCCCCcEeEEEeccCccccC-----Cce
Q 003792 84 ND--------------VVDGIDIALGKYVITLSSD----------GSTLRAWNLPDGQMVWESFLRGSKHSK-----PLL 134 (795)
Q Consensus 84 ~~--------------~i~~l~~~~g~~~V~Vs~~----------g~~v~A~d~~tG~llWe~~~~~~~~s~-----~~~ 134 (795)
.. .+.+ ++.+.+++|++++. .+.|+|+|+.||+++|++....+.... ...
T Consensus 291 ~vdl~~~~g~~~~g~~~~ts-~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~ 369 (764)
T TIGR03074 291 TVDLTAGMGTTPPGYYYPTS-PPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWDPGNPDPTAPPAPGETY 369 (764)
T ss_pred ceeeecccCcCCCccccccc-CCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEecCCCCcccCCCCCCEe
Confidence 10 0112 23455667777632 468999999999999999864322100 000
Q ss_pred ecccc-----ccccC-CCeEEE-------------------EeCCEEEEEECCCCcEEEEEeccCcce----eeee--EE
Q 003792 135 LVPTN-----LKVDK-DSLILV-------------------SSKGCLHAVSSIDGEILWTRDFAAESV----EVQQ--VI 183 (795)
Q Consensus 135 ~~~~~-----~~~~~-~~~V~V-------------------~~~g~l~ald~~tG~~~W~~~~~~~~~----~~~~--vv 183 (795)
..+.. ...|. .+.||+ ...+.|.|||++||+.+|.++....+. .+.+ ++
T Consensus 370 ~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~ 449 (764)
T TIGR03074 370 TRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQTVHHDLWDMDVPAQPSLV 449 (764)
T ss_pred ccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecccCCccccccccCCceEE
Confidence 00000 00111 133443 125789999999999999997732211 1222 22
Q ss_pred EEec-CC----EEEEEEecCCceeEEEEEEcCCCceeeeee
Q 003792 184 QLDE-SD----QIYVVGYAGSSQFHAYQINAMNGELLNHET 219 (795)
Q Consensus 184 ~s~~-~~----~Vyvv~~~g~~~~~v~ald~~tG~~~w~~~ 219 (795)
+... ++ .||..+-+| .+++||.+||+++|..+
T Consensus 450 d~~~~~G~~~~~v~~~~K~G----~~~vlDr~tG~~l~~~~ 486 (764)
T TIGR03074 450 DLPDADGTTVPALVAPTKQG----QIYVLDRRTGEPIVPVE 486 (764)
T ss_pred eeecCCCcEeeEEEEECCCC----EEEEEECCCCCEEeece
Confidence 2222 44 566655555 89999999999999875
No 14
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=99.29 E-value=1.5e-10 Score=129.59 Aligned_cols=185 Identities=19% Similarity=0.324 Sum_probs=124.4
Q ss_pred eccccceeEEEeccCceeeeeeeeec-cCCCEEEEEeCCCEEEEEECcCCccceEEEcCCcceeeeeeeeeCCEEEEEEc
Q 003792 25 EDQVGLMDWHQQYIGKVKHAVFHTQK-TGRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSS 103 (795)
Q Consensus 25 edq~G~~dW~~~~vG~~~~~~f~~~~-~~~~~v~vat~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~ 103 (795)
..+.|+..|+..+.+ ....+..|. ..+++||+++.++.++|||++||+++|++..+.. ....-++..+++.|++.+
T Consensus 84 d~~~g~~~W~~~~~~--~~~~~~~~~~~~~G~i~~g~~~g~~y~ld~~~G~~~W~~~~~~~-~~~~~~~v~~~~~v~~~s 160 (370)
T COG1520 84 NPDTGLVKWSYPLLG--AVAQLSGPILGSDGKIYVGSWDGKLYALDASTGTLVWSRNVGGS-PYYASPPVVGDGTVYVGT 160 (370)
T ss_pred eCCCCcEEecccCcC--cceeccCceEEeCCeEEEecccceEEEEECCCCcEEEEEecCCC-eEEecCcEEcCcEEEEec
Confidence 455788889998876 111222221 2378899999999999999999999999999871 011112456788888876
Q ss_pred cCCeEEEEeCCCCcEeEEEeccCccccCCceeccccccccCCCeEEEEe---CCEEEEEECCCCcEEEEEeccCcc----
Q 003792 104 DGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSS---KGCLHAVSSIDGEILWTRDFAAES---- 176 (795)
Q Consensus 104 ~g~~v~A~d~~tG~llWe~~~~~~~~s~~~~~~~~~~~~~~~~~V~V~~---~g~l~ald~~tG~~~W~~~~~~~~---- 176 (795)
+.+.++++|+.||+++|+.....+ ... ..... ....++.+++.. ++.++|+|+.+|..+|+.+.....
T Consensus 161 ~~g~~~al~~~tG~~~W~~~~~~~-~~~--~~~~~--~~~~~~~vy~~~~~~~~~~~a~~~~~G~~~w~~~~~~~~~~~~ 235 (370)
T COG1520 161 DDGHLYALNADTGTLKWTYETPAP-LSL--SIYGS--PAIASGTVYVGSDGYDGILYALNAEDGTLKWSQKVSQTIGRTA 235 (370)
T ss_pred CCCeEEEEEccCCcEEEEEecCCc-ccc--ccccC--ceeecceEEEecCCCcceEEEEEccCCcEeeeeeeecccCccc
Confidence 567999999999999999888653 211 11110 112356677763 458999999999999995432211
Q ss_pred eeeeeEE---EEecCCEEEEEEecCCceeEEEEEEcCCCceeeeeeee
Q 003792 177 VEVQQVI---QLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAA 221 (795)
Q Consensus 177 ~~~~~vv---~s~~~~~Vyvv~~~g~~~~~v~ald~~tG~~~w~~~v~ 221 (795)
..-...+ ....++.+|..+..| +++|+|..+|+++|+....
T Consensus 236 ~~~~~~~~~~~v~v~~~~~~~~~~g----~~~~l~~~~G~~~W~~~~~ 279 (370)
T COG1520 236 ISTTPAVDGGPVYVDGGVYAGSYGG----KLLCLDADTGELIWSFPAG 279 (370)
T ss_pred ccccccccCceEEECCcEEEEecCC----eEEEEEcCCCceEEEEecc
Confidence 1000010 012445556544444 7999999999999999654
No 15
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=99.26 E-value=2.1e-10 Score=133.69 Aligned_cols=186 Identities=16% Similarity=0.227 Sum_probs=115.4
Q ss_pred ccccceeEEEeccCcee-ee-----eee-eeccCCCEEEEEeCCCEEEEEECcCCccceEEEcCCcc---eeeeeeeeeC
Q 003792 26 DQVGLMDWHQQYIGKVK-HA-----VFH-TQKTGRKRVVVSTEENVIASLDLRHGEIFWRHVLGIND---VVDGIDIALG 95 (795)
Q Consensus 26 dq~G~~dW~~~~vG~~~-~~-----~f~-~~~~~~~~v~vat~~g~l~ALn~~tG~ivWR~~l~~~~---~i~~l~~~~g 95 (795)
.+.|+..|++..-.... .. ... .+...+++||+++.++.|+|||++||+++|++.+.... .+.+. +.+.
T Consensus 86 a~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tss-P~v~ 164 (527)
T TIGR03075 86 AKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAA-PLVV 164 (527)
T ss_pred CCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCC-cEEE
Confidence 56799999998622111 11 011 13345789999999999999999999999999875321 12223 3444
Q ss_pred CEEEEEEcc------CCeEEEEeCCCCcEeEEEeccCcccc---------------------------CCceeccccccc
Q 003792 96 KYVITLSSD------GSTLRAWNLPDGQMVWESFLRGSKHS---------------------------KPLLLVPTNLKV 142 (795)
Q Consensus 96 ~~~V~Vs~~------g~~v~A~d~~tG~llWe~~~~~~~~s---------------------------~~~~~~~~~~~~ 142 (795)
++.|+++.. .+.|+|+|++||+++|++....+.-. ...+..+ ..
T Consensus 165 ~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~---s~ 241 (527)
T TIGR03075 165 KGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTG---SY 241 (527)
T ss_pred CCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCCCccccCCCCccCce---eE
Confidence 556776532 36899999999999999887533200 0000000 12
Q ss_pred cC-CCeEEEEe------CC-----------EEEEEECCCCcEEEEEeccCcce------eeeeEEEEecCCE---EEEEE
Q 003792 143 DK-DSLILVSS------KG-----------CLHAVSSIDGEILWTRDFAAESV------EVQQVIQLDESDQ---IYVVG 195 (795)
Q Consensus 143 ~~-~~~V~V~~------~g-----------~l~ald~~tG~~~W~~~~~~~~~------~~~~vv~s~~~~~---Vyvv~ 195 (795)
|. .+.||+.. .+ .|.|||++||+.+|.++...... ....+++...+++ +++.+
T Consensus 242 D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~ 321 (527)
T TIGR03075 242 DPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHA 321 (527)
T ss_pred cCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEe
Confidence 21 35677743 12 89999999999999998743321 1112332212333 34322
Q ss_pred ecCCceeEEEEEEcCCCceeeee
Q 003792 196 YAGSSQFHAYQINAMNGELLNHE 218 (795)
Q Consensus 196 ~~g~~~~~v~ald~~tG~~~w~~ 218 (795)
. .+..+++||..||++++..
T Consensus 322 ~---K~G~~~vlDr~tG~~i~~~ 341 (527)
T TIGR03075 322 D---RNGFFYVLDRTNGKLLSAE 341 (527)
T ss_pred C---CCceEEEEECCCCceeccc
Confidence 2 2238999999999998654
No 16
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.01 E-value=2.2e-08 Score=102.13 Aligned_cols=183 Identities=17% Similarity=0.317 Sum_probs=131.1
Q ss_pred CCEEEEEeCCCEEEEEECcCCccceEEEcCCcceeeeeeeeeCCEEEEEEccCCeEEEEeCCCCcEeEEEeccCccccCC
Q 003792 53 RKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKP 132 (795)
Q Consensus 53 ~~~v~vat~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~~~~~~~s~~ 132 (795)
+..||.+|..+.+.|+|+++|++.|++.++.. +.+.+...|+- |+++-..+.++-++-+||.+.|.+..-++.-++
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~ilg~R--iE~sa~vvgdf-VV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~- 98 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILGVR--IECSAIVVGDF-VVLGCYSGGLYFLCVKTGSQIWNFVILETVKVR- 98 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhhCce--eeeeeEEECCE-EEEEEccCcEEEEEecchhheeeeeehhhhccc-
Confidence 45699999999999999999999999999877 55543455654 555766678999999999999999887654311
Q ss_pred ceeccccccccCCCeEEEEe-CCEEEEEECCCCcEEEEEeccCcceeeeeEEEEecCCEEEEEEecCCceeEEEEEEcCC
Q 003792 133 LLLVPTNLKVDKDSLILVSS-KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMN 211 (795)
Q Consensus 133 ~~~~~~~~~~~~~~~V~V~~-~g~l~ald~~tG~~~W~~~~~~~~~~~~~vv~s~~~~~Vyvv~~~g~~~~~v~ald~~t 211 (795)
+ .+ +.+ .+.++..+ |+.++|||..+-.-+|+.+-+.... ...++ ...++.+|+....| .|.+.+.++
T Consensus 99 a-~~----d~~-~glIycgshd~~~yalD~~~~~cVykskcgG~~f-~sP~i-~~g~~sly~a~t~G----~vlavt~~~ 166 (354)
T KOG4649|consen 99 A-QC----DFD-GGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTF-VSPVI-APGDGSLYAAITAG----AVLAVTKNP 166 (354)
T ss_pred e-EE----cCC-CceEEEecCCCcEEEecccccceEEecccCCcee-cccee-cCCCceEEEEeccc----eEEEEccCC
Confidence 1 22 122 46777774 9999999999999999987776543 22232 24578899877776 799999999
Q ss_pred C--ceeeeeeeeccCCcccceEEecCcE-EEEEECCCCeEEEEEeecCe
Q 003792 212 G--ELLNHETAAFSGGFVGDVALVSSDT-LVTLDTTRSILVTVSFKNRK 257 (795)
Q Consensus 212 G--~~~w~~~v~~~~~~~~~~~~vg~~~-lv~~d~~~~~L~v~~l~sg~ 257 (795)
+ ..+|..+...| +-+++..++..+ +-|+| |.|...+ .+|+
T Consensus 167 ~~~~~~w~~~~~~P--iF~splcv~~sv~i~~Vd---G~l~~f~-~sG~ 209 (354)
T KOG4649|consen 167 YSSTEFWAATRFGP--IFASPLCVGSSVIITTVD---GVLTSFD-ESGR 209 (354)
T ss_pred CCcceehhhhcCCc--cccCceeccceEEEEEec---cEEEEEc-CCCc
Confidence 9 88898865554 333344444332 22443 5666666 5565
No 17
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.76 E-value=2.6e-06 Score=87.22 Aligned_cols=178 Identities=13% Similarity=0.150 Sum_probs=131.3
Q ss_pred eccccceeEEEeccCceeeeeeeeeccCCCEEEEEeCCCEEEEEECcCCccceEEEcCCcceeeeeeeeeCCEEEEEEcc
Q 003792 25 EDQVGLMDWHQQYIGKVKHAVFHTQKTGRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSD 104 (795)
Q Consensus 25 edq~G~~dW~~~~vG~~~~~~f~~~~~~~~~v~vat~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~~ 104 (795)
..|.|+..|++-+-++....... .++-|+++-.+|.||-|+-+||+..|.....+....... .....+.++.++.
T Consensus 39 d~~sG~~~We~ilg~RiE~sa~v----vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~-~d~~~glIycgsh 113 (354)
T KOG4649|consen 39 DPQSGNLIWEAILGVRIECSAIV----VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQ-CDFDGGLIYCGSH 113 (354)
T ss_pred cCCCCcEEeehhhCceeeeeeEE----ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceE-EcCCCceEEEecC
Confidence 36789999999886776533332 267799999999999999999999999988766222221 2346779999998
Q ss_pred CCeEEEEeCCCCcEeEEEeccCccccCCceeccccccccCCCeEEEE-eCCEEEEEECCCC--cEEEEEeccCcceeeee
Q 003792 105 GSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVS-SKGCLHAVSSIDG--EILWTRDFAAESVEVQQ 181 (795)
Q Consensus 105 g~~v~A~d~~tG~llWe~~~~~~~~s~~~~~~~~~~~~~~~~~V~V~-~~g~l~ald~~tG--~~~W~~~~~~~~~~~~~ 181 (795)
+++++|+|..+=.-+|..+-.+... ..+.+.+ .++.+++. ..|.|.|.+.+++ ...|.+....|-..-.+
T Consensus 114 d~~~yalD~~~~~cVykskcgG~~f-~sP~i~~------g~~sly~a~t~G~vlavt~~~~~~~~~w~~~~~~PiF~spl 186 (354)
T KOG4649|consen 114 DGNFYALDPKTYGCVYKSKCGGGTF-VSPVIAP------GDGSLYAAITAGAVLAVTKNPYSSTEFWAATRFGPIFASPL 186 (354)
T ss_pred CCcEEEecccccceEEecccCCcee-ccceecC------CCceEEEEeccceEEEEccCCCCcceehhhhcCCccccCce
Confidence 8999999999999999988877665 2222221 25778887 6999999999999 89999988776542112
Q ss_pred EEEEecCCEEEEEEecCCceeEEEEEEcCCCceeeeeeeecc
Q 003792 182 VIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAFS 223 (795)
Q Consensus 182 vv~s~~~~~Vyvv~~~g~~~~~v~ald~~tG~~~w~~~v~~~ 223 (795)
++ +..+.....+| .+.++| ..|+.+|+..-..|
T Consensus 187 cv----~~sv~i~~VdG----~l~~f~-~sG~qvwr~~t~Gp 219 (354)
T KOG4649|consen 187 CV----GSSVIITTVDG----VLTSFD-ESGRQVWRPATKGP 219 (354)
T ss_pred ec----cceEEEEEecc----EEEEEc-CCCcEEEeecCCCc
Confidence 32 23344445566 799999 79999998864433
No 18
>COG4993 Gcd Glucose dehydrogenase [Carbohydrate transport and metabolism]
Probab=98.64 E-value=1e-06 Score=99.50 Aligned_cols=204 Identities=18% Similarity=0.231 Sum_probs=124.0
Q ss_pred CCEEEEEeCCCEEEEEECcCCccceEEEcCCcceee-------eee--eeeCC------EEEEEEccCCeEEEEeCCCCc
Q 003792 53 RKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVD-------GID--IALGK------YVITLSSDGSTLRAWNLPDGQ 117 (795)
Q Consensus 53 ~~~v~vat~~g~l~ALn~~tG~ivWR~~l~~~~~i~-------~l~--~~~g~------~~V~Vs~~g~~v~A~d~~tG~ 117 (795)
++.+|+.|..|.+.|||++||+++||+.-..+.++. ++. ..... ..|++...+.+|.|+|++||+
T Consensus 214 gdtlYvcTphn~v~ALDa~TGkekWkydp~~~~nv~~~~~tCrgVsy~~a~a~~k~pc~~rIflpt~DarlIALdA~tGk 293 (773)
T COG4993 214 GDTLYVCTPHNRVFALDAATGKEKWKYDPNLKSNVDPQHQTCRGVSYGAAKADAKSPCPRRIFLPTADARLIALDADTGK 293 (773)
T ss_pred CCEEEEecCcceeEEeeccCCceeeecCCCCCCCcccccccccceecccccccccCCCceeEEeecCCceEEEEeCCCCc
Confidence 678999999999999999999999999876653332 110 11122 237776667899999999999
Q ss_pred EeEEEeccCccc-------cCCceeccccccccCCCeEEEE-e----------CCEEEEEECCCCcEEEEEeccCccee-
Q 003792 118 MVWESFLRGSKH-------SKPLLLVPTNLKVDKDSLILVS-S----------KGCLHAVSSIDGEILWTRDFAAESVE- 178 (795)
Q Consensus 118 llWe~~~~~~~~-------s~~~~~~~~~~~~~~~~~V~V~-~----------~g~l~ald~~tG~~~W~~~~~~~~~~- 178 (795)
..|.+.-.+... ..+....+.+...-..+.+++. + .|.+.++|..+|+..|.++...++..
T Consensus 294 vc~~Fa~~Ga~~l~tgm~~~k~g~y~~tS~p~~~~~~~v~~g~v~Dn~st~e~sgVir~fdv~tG~l~w~~D~gnpD~t~ 373 (773)
T COG4993 294 VCWSFANKGALNLETGMKDTKDGLYYGTSPPEFGVKGIVIAGSVADNESTWEPSGVIRGFDVLTGKLTWAGDPGNPDPTA 373 (773)
T ss_pred EeheeccCceeeeeccCCCCCCCeEeecCCCcccceeEEEeeccCCCceeeccCccccccccccCceEEccCCCCCCCCC
Confidence 999976443211 0111122111111112333332 1 57888999999999999977654321
Q ss_pred ---eeeE-E---------EE--ecCCEEEEEEec------C--------CceeEEEEEEcCCCceeeeeeeecc--CCcc
Q 003792 179 ---VQQV-I---------QL--DESDQIYVVGYA------G--------SSQFHAYQINAMNGELLNHETAAFS--GGFV 227 (795)
Q Consensus 179 ---~~~v-v---------~s--~~~~~Vyvv~~~------g--------~~~~~v~ald~~tG~~~w~~~v~~~--~~~~ 227 (795)
+.+- . .+ ..-+.||+---. | .+.-.++|+|+.||+..|-++..-. ++++
T Consensus 374 p~~~g~tyt~nspn~W~~~SyD~~lnlVy~p~Gn~~pd~wg~trtp~dekysssivAlD~~TG~~kW~yQtvhhDlWDmD 453 (773)
T COG4993 374 PTAPGQTYTRNSPNSWASASYDAKLNLVYVPMGNQTPDTWGGTRTPGDEKYSSSIVALDATTGKLKWVYQTVHHDLWDMD 453 (773)
T ss_pred CCCCCceeecCCCCcccccccCCCCCeEEEeCCCCChhhccCCCCcccccccceeEEecCCCcceeeeeeccCcchhccc
Confidence 0010 0 01 124567753221 1 1235689999999999998863221 3332
Q ss_pred --cceEEe----cCc---EEEEEECCCCeEEEEEeecCe
Q 003792 228 --GDVALV----SSD---TLVTLDTTRSILVTVSFKNRK 257 (795)
Q Consensus 228 --~~~~~v----g~~---~lv~~d~~~~~L~v~~l~sg~ 257 (795)
..+.++ ++. .++..+ .+|.++++|=.+|+
T Consensus 454 vp~qp~L~D~~~DG~~vpalv~pt-k~G~~YVlDRrtGe 491 (773)
T COG4993 454 VPAQPTLLDITKDGKVVPALVHPT-KNGFIYVLDRRTGE 491 (773)
T ss_pred CCCCceEEEeecCCcEeeeeeccc-ccCcEEEEEcCCCc
Confidence 233333 111 344455 46889999988887
No 19
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=97.89 E-value=0.051 Score=57.54 Aligned_cols=183 Identities=13% Similarity=0.150 Sum_probs=103.4
Q ss_pred EEEEeCCCEEEEEECcCCccceEEEcCCcceeeeeeeeeCCEEEEE-EccCCeEEEEeCCCCcEeEEEeccCccccCCce
Q 003792 56 VVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITL-SSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLL 134 (795)
Q Consensus 56 v~vat~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~V-s~~g~~v~A~d~~tG~llWe~~~~~~~~s~~~~ 134 (795)
++.++.+|.|..+|.++|+.+.+...... ..++....++..+++ ++.++.++.||..+|+.+.+........ ...
T Consensus 4 ~~s~~~d~~v~~~d~~t~~~~~~~~~~~~--~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~--~~~ 79 (300)
T TIGR03866 4 YVSNEKDNTISVIDTATLEVTRTFPVGQR--PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPE--LFA 79 (300)
T ss_pred EEEecCCCEEEEEECCCCceEEEEECCCC--CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCcc--EEE
Confidence 44567789999999999998877654332 233322233344544 4456799999999999876654332211 111
Q ss_pred eccccccccCCCeEEEE--eCCEEEEEECCCCcEEEEEeccCcceeeeeEEEEecCCEEEEEEecCCceeEEEEEEcCCC
Q 003792 135 LVPTNLKVDKDSLILVS--SKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNG 212 (795)
Q Consensus 135 ~~~~~~~~~~~~~V~V~--~~g~l~ald~~tG~~~W~~~~~~~~~~~~~vv~s~~~~~Vyvv~~~g~~~~~v~ald~~tG 212 (795)
+ ..+ ++.+++. .++.+..+|..+++.+...+.... +..+..+ .++..++++..++. .+..+|..+|
T Consensus 80 ~-----~~~-g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~---~~~~~~~-~dg~~l~~~~~~~~--~~~~~d~~~~ 147 (300)
T TIGR03866 80 L-----HPN-GKILYIANEDDNLVTVIDIETRKVLAEIPVGVE---PEGMAVS-PDGKIVVNTSETTN--MAHFIDTKTY 147 (300)
T ss_pred E-----CCC-CCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCC---cceEEEC-CCCCEEEEEecCCC--eEEEEeCCCC
Confidence 1 112 3456665 278999999999988777654321 2223212 23444444433221 3556788888
Q ss_pred ceeeeeeeeccCCcccceEEe-cCcEEEEEECCCCeEEEEEeecCe
Q 003792 213 ELLNHETAAFSGGFVGDVALV-SSDTLVTLDTTRSILVTVSFKNRK 257 (795)
Q Consensus 213 ~~~w~~~v~~~~~~~~~~~~v-g~~~lv~~d~~~~~L~v~~l~sg~ 257 (795)
+........ ... ....+. .+..++......+.+++.|+++++
T Consensus 148 ~~~~~~~~~--~~~-~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~ 190 (300)
T TIGR03866 148 EIVDNVLVD--QRP-RFAEFTADGKELWVSSEIGGTVSVIDVATRK 190 (300)
T ss_pred eEEEEEEcC--CCc-cEEEECCCCCEEEEEcCCCCEEEEEEcCcce
Confidence 776543211 111 112222 233443333345789999998876
No 20
>COG4993 Gcd Glucose dehydrogenase [Carbohydrate transport and metabolism]
Probab=97.83 E-value=0.00032 Score=79.84 Aligned_cols=165 Identities=16% Similarity=0.284 Sum_probs=96.1
Q ss_pred CCCEEEEEeCCCEEEEEECcCCccceEEEcCCcc------------eeeee-eeeeCCEEEEEEc----------cCCeE
Q 003792 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVLGIND------------VVDGI-DIALGKYVITLSS----------DGSTL 108 (795)
Q Consensus 52 ~~~~v~vat~~g~l~ALn~~tG~ivWR~~l~~~~------------~i~~l-~~~~g~~~V~Vs~----------~g~~v 108 (795)
...|||..|.+..|.|||++||++.|.+.-.... -..+. .+..+...+++++ ..+.+
T Consensus 271 c~~rIflpt~DarlIALdA~tGkvc~~Fa~~Ga~~l~tgm~~~k~g~y~~tS~p~~~~~~~v~~g~v~Dn~st~e~sgVi 350 (773)
T COG4993 271 CPRRIFLPTADARLIALDADTGKVCWSFANKGALNLETGMKDTKDGLYYGTSPPEFGVKGIVIAGSVADNESTWEPSGVI 350 (773)
T ss_pred CceeEEeecCCceEEEEeCCCCcEeheeccCceeeeeccCCCCCCCeEeecCCCcccceeEEEeeccCCCceeeccCccc
Confidence 3567999999999999999999999996432210 00011 1112222222222 13578
Q ss_pred EEEeCCCCcEeEEEeccCccc------------cCCceecccccccc-CCCeEEEE-e------------------CCEE
Q 003792 109 RAWNLPDGQMVWESFLRGSKH------------SKPLLLVPTNLKVD-KDSLILVS-S------------------KGCL 156 (795)
Q Consensus 109 ~A~d~~tG~llWe~~~~~~~~------------s~~~~~~~~~~~~~-~~~~V~V~-~------------------~g~l 156 (795)
|++|..+|+++|.+.-..+.. ..+.....+ .-| +-+.|++- . ...+
T Consensus 351 r~fdv~tG~l~w~~D~gnpD~t~p~~~g~tyt~nspn~W~~~--SyD~~lnlVy~p~Gn~~pd~wg~trtp~dekysssi 428 (773)
T COG4993 351 RGFDVLTGKLTWAGDPGNPDPTAPTAPGQTYTRNSPNSWASA--SYDAKLNLVYVPMGNQTPDTWGGTRTPGDEKYSSSI 428 (773)
T ss_pred cccccccCceEEccCCCCCCCCCCCCCCceeecCCCCccccc--ccCCCCCeEEEeCCCCChhhccCCCCccccccccee
Confidence 999999999999988654421 000000000 111 12456662 1 3579
Q ss_pred EEEECCCCcEEEEEeccCcce----eeeeE--EEEecCCEEEEEEecCCceeEEEEEEcCCCceeeee
Q 003792 157 HAVSSIDGEILWTRDFAAESV----EVQQV--IQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHE 218 (795)
Q Consensus 157 ~ald~~tG~~~W~~~~~~~~~----~~~~v--v~s~~~~~Vyvv~~~g~~~~~v~ald~~tG~~~w~~ 218 (795)
.|+|+.||+.+|.+.....++ .+.|. ++...++++.=+-.....+..++.||..||+++-..
T Consensus 429 vAlD~~TG~~kW~yQtvhhDlWDmDvp~qp~L~D~~~DG~~vpalv~ptk~G~~YVlDRrtGe~lv~~ 496 (773)
T COG4993 429 VALDATTGKLKWVYQTVHHDLWDMDVPAQPTLLDITKDGKVVPALVHPTKNGFIYVLDRRTGELLVPI 496 (773)
T ss_pred EEecCCCcceeeeeeccCcchhcccCCCCceEEEeecCCcEeeeeecccccCcEEEEEcCCCcccccc
Confidence 999999999999987653321 13332 233345544322222222347899999999987544
No 21
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=97.73 E-value=0.05 Score=61.13 Aligned_cols=318 Identities=14% Similarity=0.133 Sum_probs=147.6
Q ss_pred cceeeccccceeEEEeccCceeeeeeeeeccCCCEEEEEeCCCEEEEEECcCCccceEEEcCCcceeeeeeeeeCCEEEE
Q 003792 21 LSLYEDQVGLMDWHQQYIGKVKHAVFHTQKTGRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVIT 100 (795)
Q Consensus 21 ~Al~edq~G~~dW~~~~vG~~~~~~f~~~~~~~~~v~vat~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~ 100 (795)
.++...+..++.-+.+..|.+ +... ..+++++.+|+++.+|.|.-+|+.+++++-+...... ..++.+..++..++
T Consensus 18 v~viD~~t~~~~~~i~~~~~~-h~~~-~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~--~~~i~~s~DG~~~~ 93 (369)
T PF02239_consen 18 VAVIDGATNKVVARIPTGGAP-HAGL-KFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGN--PRGIAVSPDGKYVY 93 (369)
T ss_dssp EEEEETTT-SEEEEEE-STTE-EEEE-E-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSE--EEEEEE--TTTEEE
T ss_pred EEEEECCCCeEEEEEcCCCCc-eeEE-EecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCC--cceEEEcCCCCEEE
Confidence 466666667776776664544 2111 1223466799999999999999999999999888665 33443344555667
Q ss_pred EEc-cCCeEEEEeCCCCcEeEEEeccCccc----cCCceeccccccccCCCeEEE--Ee-CCEEEEEECCCCcEEEEEec
Q 003792 101 LSS-DGSTLRAWNLPDGQMVWESFLRGSKH----SKPLLLVPTNLKVDKDSLILV--SS-KGCLHAVSSIDGEILWTRDF 172 (795)
Q Consensus 101 Vs~-~g~~v~A~d~~tG~llWe~~~~~~~~----s~~~~~~~~~~~~~~~~~V~V--~~-~g~l~ald~~tG~~~W~~~~ 172 (795)
++. ..+.+..+|++|.+++=+.+..+... +....++. . . .+.-++ +. .+++.-+|..+.+.......
T Consensus 94 v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~---s-~-~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i 168 (369)
T PF02239_consen 94 VANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVA---S-P-GRPEFVVNLKDTGEIWVVDYSDPKNLKVTTI 168 (369)
T ss_dssp EEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-----S-SSSEEEEEETTTTEEEEEETTTSSCEEEEEE
T ss_pred EEecCCCceeEeccccccceeecccccccccccCCCceeEEe---c-C-CCCEEEEEEccCCeEEEEEeccccccceeee
Confidence 665 46799999999999998877653211 00001111 0 1 222222 22 46666666666655444333
Q ss_pred cCcceeeeeEEEEecCCEEEEEEecCCceeEEEEEEcCCCceeeeeeee-ccCCccc-ceEEecCcEEEEEECCCCeEEE
Q 003792 173 AAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAA-FSGGFVG-DVALVSSDTLVTLDTTRSILVT 250 (795)
Q Consensus 173 ~~~~~~~~~vv~s~~~~~Vyvv~~~g~~~~~v~ald~~tG~~~w~~~v~-~~~~~~~-~~~~vg~~~lv~~d~~~~~L~v 250 (795)
..+.. +.-.. ...+++.|+++..++. ++..+|.++++.+...... .|....+ ..+..+.+. +|.....+...+
T Consensus 169 ~~g~~-~~D~~-~dpdgry~~va~~~sn--~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~-vw~~~~~~~~~~ 243 (369)
T PF02239_consen 169 KVGRF-PHDGG-FDPDGRYFLVAANGSN--KIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGP-VWATSGLGYFAI 243 (369)
T ss_dssp E--TT-EEEEE-E-TTSSEEEEEEGGGT--EEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEE-EEEEEBSSSSEE
T ss_pred ccccc-ccccc-cCcccceeeecccccc--eeEEEeeccceEEEEeeccccccccccccccCCCcce-EEeeccccceec
Confidence 22221 11111 1234455545544322 7889999999988765432 1211111 111112222 233322333333
Q ss_pred EEeecCeeeeEEEeecccCCCCCCceEEeecCCcceeEEEecC--cEEEEEEe---cCCcEEEEEeecCcceeeeeeeec
Q 003792 251 VSFKNRKIAFQETHLSNLGEDSSGMVEILPSSLTGMFTVKINN--YKLFIRLT---SEDKLEVVHKVDHETVVSDALVFS 325 (795)
Q Consensus 251 ~~l~sg~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~---~~~~~~v~~~~~~~~~~s~~~~~~ 325 (795)
-.+++.. ..-.... .-..++-++.+..| +++...| +++.+... +++.+.+++..... .+ ..+...
T Consensus 244 ~~ig~~~--v~v~d~~-----~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~-~~-~~i~~~ 313 (369)
T PF02239_consen 244 PLIGTDP--VSVHDDY-----AWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLK-VV-KTITPG 313 (369)
T ss_dssp EEEE--T--TT-STTT-----BTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTE-EE-E-HHHH
T ss_pred ccccCCc--cccchhh-----cCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcc-ee-EEEecc
Confidence 3333332 1101110 11133444444444 4444455 55666521 33467777654431 11 111001
Q ss_pred CCceEEE-EEEecCceEEEE---Ee-eeeeeecCccceeeee
Q 003792 326 EGKEAFA-VVEHGGSKVDIT---VK-PGQDWNNNLVQESIEM 362 (795)
Q Consensus 326 ~~~~~~~-~~~~~~~~v~~~---~~-~~~~~~~~~~~~~~~~ 362 (795)
.++.+.. -.+..+..++++ .. ++.+||..+.++.-.+
T Consensus 314 ~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i 355 (369)
T PF02239_consen 314 PGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRI 355 (369)
T ss_dssp HT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEE
T ss_pred CCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEE
Confidence 1111221 224455555665 22 6888998877764443
No 22
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=97.68 E-value=0.11 Score=55.01 Aligned_cols=189 Identities=14% Similarity=0.171 Sum_probs=103.8
Q ss_pred CCCEEEEE-eCCCEEEEEECcCCccceEEEcCCcceeeeeeeeeCCEEEEEEc-cCCeEEEEeCCCCcEeEEEeccCccc
Q 003792 52 GRKRVVVS-TEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSS-DGSTLRAWNLPDGQMVWESFLRGSKH 129 (795)
Q Consensus 52 ~~~~v~va-t~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~-~g~~v~A~d~~tG~llWe~~~~~~~~ 129 (795)
+++.+|++ +.++.|..+|.++|+...+...... ...+....+++.+++++ .++.++.||..+++.+.+.......
T Consensus 41 dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~--~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~- 117 (300)
T TIGR03866 41 DGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD--PELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEP- 117 (300)
T ss_pred CCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC--ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCc-
Confidence 34567654 5679999999999988655433222 22221223344566553 4679999999999988777643221
Q ss_pred cCCceeccccccccCCCeEEE-Ee-C-CEEEEEECCCCcEEEEEeccCcceeeeeEEEEecCCEEEEEEecCCceeEEEE
Q 003792 130 SKPLLLVPTNLKVDKDSLILV-SS-K-GCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQ 206 (795)
Q Consensus 130 s~~~~~~~~~~~~~~~~~V~V-~~-~-g~l~ald~~tG~~~W~~~~~~~~~~~~~vv~s~~~~~Vyvv~~~g~~~~~v~a 206 (795)
..+.+.+ ++..++ .. + ..+..+|..+|+.......... +..+..+..+..+++.+..++ .+..
T Consensus 118 -~~~~~~~-------dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~---~~~~~~s~dg~~l~~~~~~~~---~v~i 183 (300)
T TIGR03866 118 -EGMAVSP-------DGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQR---PRFAEFTADGKELWVSSEIGG---TVSV 183 (300)
T ss_pred -ceEEECC-------CCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCCC---ccEEEECCCCCEEEEEcCCCC---EEEE
Confidence 1111222 344443 33 2 3567778888877655433221 222222234445655443233 6888
Q ss_pred EEcCCCceeeeeeeeccC----Cccc-ceEEe-cCcEEEEEECCCCeEEEEEeecCe
Q 003792 207 INAMNGELLNHETAAFSG----GFVG-DVALV-SSDTLVTLDTTRSILVTVSFKNRK 257 (795)
Q Consensus 207 ld~~tG~~~w~~~v~~~~----~~~~-~~~~v-g~~~lv~~d~~~~~L~v~~l~sg~ 257 (795)
+|..+|+.+.+.....+. .... .+.+- ++..+++.....+.+++.|+++++
T Consensus 184 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~ 240 (300)
T TIGR03866 184 IDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYE 240 (300)
T ss_pred EEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCc
Confidence 999999877554432211 1111 12221 334444443345678888988776
No 23
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=97.61 E-value=9.6e-05 Score=54.53 Aligned_cols=31 Identities=29% Similarity=0.595 Sum_probs=28.7
Q ss_pred CEEEEEeCCCEEEEEECcCCccceEEEcCCc
Q 003792 54 KRVVVSTEENVIASLDLRHGEIFWRHVLGIN 84 (795)
Q Consensus 54 ~~v~vat~~g~l~ALn~~tG~ivWR~~l~~~ 84 (795)
++||+++.+|.|+|||++||+++|++..+..
T Consensus 1 ~~v~~~~~~g~l~AlD~~TG~~~W~~~~~~~ 31 (38)
T PF01011_consen 1 GRVYVGTPDGYLYALDAKTGKVLWKFQTGPP 31 (38)
T ss_dssp TEEEEETTTSEEEEEETTTTSEEEEEESSSG
T ss_pred CEEEEeCCCCEEEEEECCCCCEEEeeeCCCC
Confidence 4799999999999999999999999999766
No 24
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=97.55 E-value=0.044 Score=56.08 Aligned_cols=188 Identities=14% Similarity=0.174 Sum_probs=112.3
Q ss_pred CCEEEEEeCCCEEEEEECcCCccceEEEcCCcceeeeeeeeeCCEEEEEEccCCeEEEEeCCCCcEeEEEeccCccccCC
Q 003792 53 RKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKP 132 (795)
Q Consensus 53 ~~~v~vat~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~~~~~~~s~~ 132 (795)
++.+++++.+|.+...|..+++...+...... .+..+.....+..++.++.++.++.||..+++............ ..
T Consensus 63 ~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i-~~ 140 (289)
T cd00200 63 GTYLASGSSDKTIRLWDLETGECVRTLTGHTS-YVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWV-NS 140 (289)
T ss_pred CCEEEEEcCCCeEEEEEcCcccceEEEeccCC-cEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcE-EE
Confidence 45799999999999999999988877664332 23333222233455555546799999999999988877433222 11
Q ss_pred ceeccccccccCCCeEEEEe-CCEEEEEECCCCcEEEEEeccCcceeeeeEEEEecCCEEEEEEecCCceeEEEEEEcCC
Q 003792 133 LLLVPTNLKVDKDSLILVSS-KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMN 211 (795)
Q Consensus 133 ~~~~~~~~~~~~~~~V~V~~-~g~l~ald~~tG~~~W~~~~~~~~~~~~~vv~s~~~~~Vyvv~~~g~~~~~v~ald~~t 211 (795)
+...+ + ...+++.. ++.+..+|..+++....+....... ..+.....+..+++.+.+| .+..+|..+
T Consensus 141 ~~~~~-----~-~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i--~~~~~~~~~~~l~~~~~~~----~i~i~d~~~ 208 (289)
T cd00200 141 VAFSP-----D-GTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEV--NSVAFSPDGEKLLSSSSDG----TIKLWDLST 208 (289)
T ss_pred EEEcC-----c-CCEEEEEcCCCcEEEEEccccccceeEecCcccc--ceEEECCCcCEEEEecCCC----cEEEEECCC
Confidence 11211 1 23344445 8999999999998887776443221 2222122333566544444 688889988
Q ss_pred CceeeeeeeeccCCcccceEEec-CcEEEEEECCCCeEEEEEeecCe
Q 003792 212 GELLNHETAAFSGGFVGDVALVS-SDTLVTLDTTRSILVTVSFKNRK 257 (795)
Q Consensus 212 G~~~w~~~v~~~~~~~~~~~~vg-~~~lv~~d~~~~~L~v~~l~sg~ 257 (795)
|+.+.+... .+..+.. +.+-. +.++++.+ ..+.+++.++.+++
T Consensus 209 ~~~~~~~~~-~~~~i~~-~~~~~~~~~~~~~~-~~~~i~i~~~~~~~ 252 (289)
T cd00200 209 GKCLGTLRG-HENGVNS-VAFSPDGYLLASGS-EDGTIRVWDLRTGE 252 (289)
T ss_pred Cceecchhh-cCCceEE-EEEcCCCcEEEEEc-CCCcEEEEEcCCce
Confidence 888765531 1112211 11212 23444443 46789888888765
No 25
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=97.49 E-value=0.09 Score=53.77 Aligned_cols=186 Identities=18% Similarity=0.182 Sum_probs=110.8
Q ss_pred CCEEEEEeCCCEEEEEECcCCccceEEEcCCcceeeeeeeeeCCEEEEEEccCCeEEEEeCCCCcEeEEEeccCccccCC
Q 003792 53 RKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKP 132 (795)
Q Consensus 53 ~~~v~vat~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~~~~~~~s~~ 132 (795)
++.+++++.+|.+...|..+++...+...... .+..+.....+..++.++.++.++.||..+++...+........ ..
T Consensus 21 ~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i-~~ 98 (289)
T cd00200 21 GKLLATGSGDGTIKVWDLETGELLRTLKGHTG-PVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYV-SS 98 (289)
T ss_pred CCEEEEeecCcEEEEEEeeCCCcEEEEecCCc-ceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcE-EE
Confidence 56788899999999999999987777654333 23222122233355556656799999999998888877544222 11
Q ss_pred ceeccccccccCCCeEEE-Ee-CCEEEEEECCCCcEEEEEeccCcceeeeeEEEEecCCEEEEEEe-cCCceeEEEEEEc
Q 003792 133 LLLVPTNLKVDKDSLILV-SS-KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGY-AGSSQFHAYQINA 209 (795)
Q Consensus 133 ~~~~~~~~~~~~~~~V~V-~~-~g~l~ald~~tG~~~W~~~~~~~~~~~~~vv~s~~~~~Vyvv~~-~g~~~~~v~ald~ 209 (795)
+.. ..++.+++ .. +|.+..+|..+++........... +..+.. ...+.+++.+. +| .+..+|.
T Consensus 99 ~~~-------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~--i~~~~~-~~~~~~l~~~~~~~----~i~i~d~ 164 (289)
T cd00200 99 VAF-------SPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDW--VNSVAF-SPDGTFVASSSQDG----TIKLWDL 164 (289)
T ss_pred EEE-------cCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCc--EEEEEE-cCcCCEEEEEcCCC----cEEEEEc
Confidence 111 11334444 45 899999999999988877633222 122221 12244444444 44 6888899
Q ss_pred CCCceeeeeeeeccCCcccceEEe-cCcEEEEEECCCCeEEEEEeecCe
Q 003792 210 MNGELLNHETAAFSGGFVGDVALV-SSDTLVTLDTTRSILVTVSFKNRK 257 (795)
Q Consensus 210 ~tG~~~w~~~v~~~~~~~~~~~~v-g~~~lv~~d~~~~~L~v~~l~sg~ 257 (795)
.+++.+...... ...+.. +.+. .++.+++... .+.+.+.++.+++
T Consensus 165 ~~~~~~~~~~~~-~~~i~~-~~~~~~~~~l~~~~~-~~~i~i~d~~~~~ 210 (289)
T cd00200 165 RTGKCVATLTGH-TGEVNS-VAFSPDGEKLLSSSS-DGTIKLWDLSTGK 210 (289)
T ss_pred cccccceeEecC-ccccce-EEECCCcCEEEEecC-CCcEEEEECCCCc
Confidence 888887665411 111211 2222 2224444433 6788888887765
No 26
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=97.37 E-value=0.24 Score=55.67 Aligned_cols=191 Identities=12% Similarity=0.124 Sum_probs=105.8
Q ss_pred CEEEEEe-CCCEEEEEECcCCccceEEEcCCcceeeeeeeeeCCEEEEEEccCCeEEEEeCCCCcEeEEEeccCccccCC
Q 003792 54 KRVVVST-EENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKP 132 (795)
Q Consensus 54 ~~v~vat-~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~~~~~~~s~~ 132 (795)
+..||.. ++|.|+-+|.+|.+++-+........ .+.....++..+|+++.++.|.-+|+.+++++-+.+...... .
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h-~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~--~ 82 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPH-AGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPR--G 82 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEE-EEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEE--E
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCce-eEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcc--e
Confidence 3444444 57999999999999999988754411 111112334466666656799999999999999998865432 1
Q ss_pred ceeccccccccCCCeEEEE--eCCEEEEEECCCCcEEEEEeccCc-----ceeeeeEEEEecCCEEEEEEecCCceeEEE
Q 003792 133 LLLVPTNLKVDKDSLILVS--SKGCLHAVSSIDGEILWTRDFAAE-----SVEVQQVIQLDESDQIYVVGYAGSSQFHAY 205 (795)
Q Consensus 133 ~~~~~~~~~~~~~~~V~V~--~~g~l~ald~~tG~~~W~~~~~~~-----~~~~~~vv~s~~~~~Vyvv~~~g~~~~~v~ 205 (795)
..+ ..+ ++.+++. ..+.+..+|.+|.+++=+.+.... ......++ .......|+++.-... ++.
T Consensus 83 i~~-----s~D-G~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv-~s~~~~~fVv~lkd~~--~I~ 153 (369)
T PF02239_consen 83 IAV-----SPD-GKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIV-ASPGRPEFVVNLKDTG--EIW 153 (369)
T ss_dssp EEE-------T-TTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEE-E-SSSSEEEEEETTTT--EEE
T ss_pred EEE-----cCC-CCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEE-ecCCCCEEEEEEccCC--eEE
Confidence 111 122 4677776 489999999999998877654321 11122333 2344555666665311 678
Q ss_pred EEEcCCCceeeeeeeeccCCcccceEEe-cCcEEEEEECCCCeEEEEEeecCe
Q 003792 206 QINAMNGELLNHETAAFSGGFVGDVALV-SSDTLVTLDTTRSILVTVSFKNRK 257 (795)
Q Consensus 206 ald~~tG~~~w~~~v~~~~~~~~~~~~v-g~~~lv~~d~~~~~L~v~~l~sg~ 257 (795)
.+|..+.+.+....+.....+.+ ..+- .+.+++........+.++|+++++
T Consensus 154 vVdy~d~~~~~~~~i~~g~~~~D-~~~dpdgry~~va~~~sn~i~viD~~~~k 205 (369)
T PF02239_consen 154 VVDYSDPKNLKVTTIKVGRFPHD-GGFDPDGRYFLVAANGSNKIAVIDTKTGK 205 (369)
T ss_dssp EEETTTSSCEEEEEEE--TTEEE-EEE-TTSSEEEEEEGGGTEEEEEETTTTE
T ss_pred EEEeccccccceeeecccccccc-cccCcccceeeecccccceeEEEeeccce
Confidence 88888777665554444322222 1111 222333333233456666666554
No 27
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=97.32 E-value=0.42 Score=53.18 Aligned_cols=190 Identities=12% Similarity=0.086 Sum_probs=116.3
Q ss_pred CCCEEEEEeCC-----CEEEEEECcCCccceEEEcCCcceeeeeeeeeCCEEEEEE-c---------cCCeEEEEeCCCC
Q 003792 52 GRKRVVVSTEE-----NVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLS-S---------DGSTLRAWNLPDG 116 (795)
Q Consensus 52 ~~~~v~vat~~-----g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs-~---------~g~~v~A~d~~tG 116 (795)
+..++||.... |.|+.||.++++++=........ .+. +..++..+|++ + ....|..||++|+
T Consensus 11 ~~~~v~V~d~~~~~~~~~v~ViD~~~~~v~g~i~~G~~P--~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~ 87 (352)
T TIGR02658 11 DARRVYVLDPGHFAATTQVYTIDGEAGRVLGMTDGGFLP--NPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTH 87 (352)
T ss_pred CCCEEEEECCcccccCceEEEEECCCCEEEEEEEccCCC--cee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccC
Confidence 46779998886 89999999999887666554432 222 34455566663 4 4579999999999
Q ss_pred cEeEEEeccCc-cc--cCCceeccccccccCCCeEEEE--e-CCEEEEEECCCCcEEEEEeccCcceeeeeEEEEecCCE
Q 003792 117 QMVWESFLRGS-KH--SKPLLLVPTNLKVDKDSLILVS--S-KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQ 190 (795)
Q Consensus 117 ~llWe~~~~~~-~~--s~~~~~~~~~~~~~~~~~V~V~--~-~g~l~ald~~tG~~~W~~~~~~~~~~~~~vv~s~~~~~ 190 (795)
+++.+..+... .. ........ ...+ ++.++|. . ++.|..+|..+++++=+...+.... +. ....+.
T Consensus 88 ~~~~~i~~p~~p~~~~~~~~~~~~--ls~d-gk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~----vy-~t~e~~ 159 (352)
T TIGR02658 88 LPIADIELPEGPRFLVGTYPWMTS--LTPD-NKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYH----IF-PTANDT 159 (352)
T ss_pred cEEeEEccCCCchhhccCccceEE--ECCC-CCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcE----EE-EecCCc
Confidence 99999997532 10 00011111 0122 4568875 3 8899999999999999998876433 22 234555
Q ss_pred EEEEEecCCceeEEEEEEcCCCceeeeeeeec--c--CCcccce-EEecCcEEEEEECCCCeEEEEEeecCe
Q 003792 191 IYVVGYAGSSQFHAYQINAMNGELLNHETAAF--S--GGFVGDV-ALVSSDTLVTLDTTRSILVTVSFKNRK 257 (795)
Q Consensus 191 Vyvv~~~g~~~~~v~ald~~tG~~~w~~~v~~--~--~~~~~~~-~~vg~~~lv~~d~~~~~L~v~~l~sg~ 257 (795)
-++.+.+|. ...+.+| .+|+.. ..+... . -.+-..+ +...++..+|++.. |.++++|+....
T Consensus 160 ~~~~~~Dg~--~~~v~~d-~~g~~~-~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~ 226 (352)
T TIGR02658 160 FFMHCRDGS--LAKVGYG-TKGNPK-IKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGD 226 (352)
T ss_pred cEEEeecCc--eEEEEec-CCCceE-EeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCc
Confidence 556677764 2334455 366633 221111 1 0111122 22224566677655 999999986644
No 28
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=97.31 E-value=0.054 Score=60.10 Aligned_cols=211 Identities=10% Similarity=0.075 Sum_probs=125.8
Q ss_pred eccCCCEEEEEeC----------CCEEEEEECcCCccceEEEcCCcce-----e-eeeeeeeCCEEEEEEc-c-CCeEEE
Q 003792 49 QKTGRKRVVVSTE----------ENVIASLDLRHGEIFWRHVLGINDV-----V-DGIDIALGKYVITLSS-D-GSTLRA 110 (795)
Q Consensus 49 ~~~~~~~v~vat~----------~g~l~ALn~~tG~ivWR~~l~~~~~-----i-~~l~~~~g~~~V~Vs~-~-g~~v~A 110 (795)
.+++++.+|++.. .+.|..+|++|++++.+..++.... - ..+.+..++..+||+. . ...|..
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V 132 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGV 132 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEE
Confidence 4566778998776 7899999999999999999865511 0 1222345666778765 3 578999
Q ss_pred EeCCCCcEeEEEeccCccc------------cCCc------------------eec-c------ccc--cccCCCeEEEE
Q 003792 111 WNLPDGQMVWESFLRGSKH------------SKPL------------------LLV-P------TNL--KVDKDSLILVS 151 (795)
Q Consensus 111 ~d~~tG~llWe~~~~~~~~------------s~~~------------------~~~-~------~~~--~~~~~~~V~V~ 151 (795)
+|.++|+.+=+....+... +.+. ++. + ... ....++.+++.
T Consensus 133 vD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs 212 (352)
T TIGR02658 133 VDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPT 212 (352)
T ss_pred EECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEe
Confidence 9999999998887654321 0000 000 0 000 01113456666
Q ss_pred eCCEEEEEECCCCcE----EEEE-eccCc--ceeeee---EEEEecCCEEEEEEecCC------ceeEEEEEEcCCCcee
Q 003792 152 SKGCLHAVSSIDGEI----LWTR-DFAAE--SVEVQQ---VIQLDESDQIYVVGYAGS------SQFHAYQINAMNGELL 215 (795)
Q Consensus 152 ~~g~l~ald~~tG~~----~W~~-~~~~~--~~~~~~---vv~s~~~~~Vyvv~~~g~------~~~~v~ald~~tG~~~ 215 (795)
..|.|+.+|..+.++ .|.. ..... .+.|.. +.....++.+||....+. ..-+|..+|++|++.+
T Consensus 213 ~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi 292 (352)
T TIGR02658 213 YTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRL 292 (352)
T ss_pred cCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEE
Confidence 678888888443332 3432 21111 111111 222346788998653221 0137999999999999
Q ss_pred eeeeeeccCCcccceEEe-cCc-EEEEEECCCCeEEEEEeecCeeeeEEE
Q 003792 216 NHETAAFSGGFVGDVALV-SSD-TLVTLDTTRSILVTVSFKNRKIAFQET 263 (795)
Q Consensus 216 w~~~v~~~~~~~~~~~~v-g~~-~lv~~d~~~~~L~v~~l~sg~~~~~~~ 263 (795)
....+... .. ...+- ++. .+++++...+.+.++|..+++. ++.+
T Consensus 293 ~~i~vG~~--~~-~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~-i~~i 338 (352)
T TIGR02658 293 RKIELGHE--ID-SINVSQDAKPLLYALSTGDKTLYIFDAETGKE-LSSV 338 (352)
T ss_pred EEEeCCCc--ee-eEEECCCCCeEEEEeCCCCCcEEEEECcCCeE-Eeee
Confidence 88764332 11 11221 334 6667776678899999999872 4443
No 29
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=97.15 E-value=0.62 Score=51.74 Aligned_cols=221 Identities=14% Similarity=0.198 Sum_probs=117.2
Q ss_pred ccccceeEEEeccCceeeeeeeeeccCCCEEEEEeCC----CEEEEE--ECcCCccceEEEcCCcce-eeeeeeeeCCEE
Q 003792 26 DQVGLMDWHQQYIGKVKHAVFHTQKTGRKRVVVSTEE----NVIASL--DLRHGEIFWRHVLGINDV-VDGIDIALGKYV 98 (795)
Q Consensus 26 dq~G~~dW~~~~vG~~~~~~f~~~~~~~~~v~vat~~----g~l~AL--n~~tG~ivWR~~l~~~~~-i~~l~~~~g~~~ 98 (795)
++.|++...+.. .....+.|-....+++.||++++. |.|.++ +.++|++.-.......+. ...+.+...+..
T Consensus 22 ~~~g~l~~~~~~-~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~ 100 (345)
T PF10282_consen 22 EETGTLTLVQTV-AEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRF 100 (345)
T ss_dssp TTTTEEEEEEEE-EESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSE
T ss_pred CCCCCceEeeee-cCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCE
Confidence 445555444432 111123333344568889999984 566554 555577766655543221 112222235667
Q ss_pred EEEEc-cCCeEEEEeCCC-CcEeEEEecc-----Ccc-----ccCCceeccccccccCCCeEEEE--eCCEEEEEECCCC
Q 003792 99 ITLSS-DGSTLRAWNLPD-GQMVWESFLR-----GSK-----HSKPLLLVPTNLKVDKDSLILVS--SKGCLHAVSSIDG 164 (795)
Q Consensus 99 V~Vs~-~g~~v~A~d~~t-G~llWe~~~~-----~~~-----~s~~~~~~~~~~~~~~~~~V~V~--~~g~l~ald~~tG 164 (795)
++++. .++.+..++..+ |++.-..... ++. .+....+.. ..+ .+.++|. ....|+.++...+
T Consensus 101 l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~---~pd-g~~v~v~dlG~D~v~~~~~~~~ 176 (345)
T PF10282_consen 101 LYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVF---SPD-GRFVYVPDLGADRVYVYDIDDD 176 (345)
T ss_dssp EEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE----TT-SSEEEEEETTTTEEEEEEE-TT
T ss_pred EEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEE---CCC-CCEEEEEecCCCEEEEEEEeCC
Confidence 77775 367898888875 8776654321 111 000111111 122 3556665 3567777666554
Q ss_pred c--EEEEE--eccCcceeeeeEEEEecCCEEEEEEecCCceeEEEEEEcCCCceeeeeeeec-cCCccc-----ceEEe-
Q 003792 165 E--ILWTR--DFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAF-SGGFVG-----DVALV- 233 (795)
Q Consensus 165 ~--~~W~~--~~~~~~~~~~~vv~s~~~~~Vyvv~~~g~~~~~v~ald~~tG~~~w~~~v~~-~~~~~~-----~~~~v- 233 (795)
. ..-.. ..+.+. -|+.++...++..+|++.-. +..+.++.++..+|.......+.. |.+..+ .+.+-
T Consensus 177 ~~~l~~~~~~~~~~G~-GPRh~~f~pdg~~~Yv~~e~-s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~isp 254 (345)
T PF10282_consen 177 TGKLTPVDSIKVPPGS-GPRHLAFSPDGKYAYVVNEL-SNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISP 254 (345)
T ss_dssp S-TEEEEEEEECSTTS-SEEEEEE-TTSSEEEEEETT-TTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-T
T ss_pred CceEEEeeccccccCC-CCcEEEEcCCcCEEEEecCC-CCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEec
Confidence 4 33221 223222 26677655566788887644 445666777766887765555543 333322 22222
Q ss_pred cCcEEEEEECCCCeEEEEEe
Q 003792 234 SSDTLVTLDTTRSILVTVSF 253 (795)
Q Consensus 234 g~~~lv~~d~~~~~L~v~~l 253 (795)
+++.+++.+...+++.+.++
T Consensus 255 dg~~lyvsnr~~~sI~vf~~ 274 (345)
T PF10282_consen 255 DGRFLYVSNRGSNSISVFDL 274 (345)
T ss_dssp TSSEEEEEECTTTEEEEEEE
T ss_pred CCCEEEEEeccCCEEEEEEE
Confidence 45678888888888888888
No 30
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.13 E-value=0.095 Score=55.49 Aligned_cols=155 Identities=15% Similarity=0.102 Sum_probs=98.2
Q ss_pred CCCEEEEEeCC---CEEEEEECcCCccceEEEcCCcceeeeeeeeeCCEEEEEEccCCeEEEEeCCCCcEeEEEeccCcc
Q 003792 52 GRKRVVVSTEE---NVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSK 128 (795)
Q Consensus 52 ~~~~v~vat~~---g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~~~~~~ 128 (795)
.++.+|-+|.. ..|..+|++||++..++.++...=..|+ ...++.++-++=..+....||++|-+++=+++..++.
T Consensus 54 ~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGi-t~~~d~l~qLTWk~~~~f~yd~~tl~~~~~~~y~~EG 132 (264)
T PF05096_consen 54 DDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGI-TILGDKLYQLTWKEGTGFVYDPNTLKKIGTFPYPGEG 132 (264)
T ss_dssp ETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEE-EEETTEEEEEESSSSEEEEEETTTTEEEEEEE-SSS-
T ss_pred CCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeE-EEECCEEEEEEecCCeEEEEccccceEEEEEecCCcc
Confidence 37889999973 5899999999999999999887311244 2356666666755679999999999998888877654
Q ss_pred ccCCceeccccccccCCCeEEEE-eCCEEEEEECCCCcEEEEEeccCcceeeeeEE-EEecCCEEEEEEecCCceeEEEE
Q 003792 129 HSKPLLLVPTNLKVDKDSLILVS-SKGCLHAVSSIDGEILWTRDFAAESVEVQQVI-QLDESDQIYVVGYAGSSQFHAYQ 206 (795)
Q Consensus 129 ~s~~~~~~~~~~~~~~~~~V~V~-~~g~l~ald~~tG~~~W~~~~~~~~~~~~~vv-~s~~~~~Vyvv~~~g~~~~~v~a 206 (795)
. .+. .+ ++.+++. +..+|+-+|+++-+..=+...........++- ....+|.||+=-.... .++.
T Consensus 133 W----GLt-----~d-g~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i~G~IyANVW~td---~I~~ 199 (264)
T PF05096_consen 133 W----GLT-----SD-GKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYINGKIYANVWQTD---RIVR 199 (264)
T ss_dssp -----EEE-----EC-SSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEETTEEEEEETTSS---EEEE
T ss_pred e----EEE-----cC-CCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEEcCEEEEEeCCCC---eEEE
Confidence 4 121 12 3344444 36789999999988765554443222111110 0124788997433333 7899
Q ss_pred EEcCCCceeeeeee
Q 003792 207 INAMNGELLNHETA 220 (795)
Q Consensus 207 ld~~tG~~~w~~~v 220 (795)
+|++||++.....+
T Consensus 200 Idp~tG~V~~~iDl 213 (264)
T PF05096_consen 200 IDPETGKVVGWIDL 213 (264)
T ss_dssp EETTT-BEEEEEE-
T ss_pred EeCCCCeEEEEEEh
Confidence 99999999977754
No 31
>PTZ00421 coronin; Provisional
Probab=97.03 E-value=0.14 Score=59.68 Aligned_cols=195 Identities=13% Similarity=0.116 Sum_probs=106.7
Q ss_pred CCEEEEEeCCCEEEEEECcCCccceE-----EEcCCc-ceeeeeeee-eCCEEEEEEccCCeEEEEeCCCCcEeEEEecc
Q 003792 53 RKRVVVSTEENVIASLDLRHGEIFWR-----HVLGIN-DVVDGIDIA-LGKYVITLSSDGSTLRAWNLPDGQMVWESFLR 125 (795)
Q Consensus 53 ~~~v~vat~~g~l~ALn~~tG~ivWR-----~~l~~~-~~i~~l~~~-~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~~~ 125 (795)
++.++++++++.|...|..++..... ..+... ..+..+... .++++++.++.++.|+.||..+|+.+=.....
T Consensus 88 ~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h 167 (493)
T PTZ00421 88 PQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCH 167 (493)
T ss_pred CCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCC
Confidence 56799999999999999877643211 112111 123222222 23345554566789999999999876555433
Q ss_pred CccccCCceeccccccccCCCeEEE-E-eCCEEEEEECCCCcEEEEEeccCcceeeeeEEEEecCCEEEEEEecCCceeE
Q 003792 126 GSKHSKPLLLVPTNLKVDKDSLILV-S-SKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFH 203 (795)
Q Consensus 126 ~~~~s~~~~~~~~~~~~~~~~~V~V-~-~~g~l~ald~~tG~~~W~~~~~~~~~~~~~vv~s~~~~~Vyvv~~~g~~~~~ 203 (795)
...+ ..+.+ ..++..++ . .|+.+..+|..+|++..+........ ...++.....+.++..++.++....
T Consensus 168 ~~~V-~sla~-------spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~-~~~~~w~~~~~~ivt~G~s~s~Dr~ 238 (493)
T PTZ00421 168 SDQI-TSLEW-------NLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAK-SQRCLWAKRKDLIITLGCSKSQQRQ 238 (493)
T ss_pred CCce-EEEEE-------ECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCc-ceEEEEcCCCCeEEEEecCCCCCCe
Confidence 3222 11111 12344444 3 48999999999999887765443221 1122222345566666655433346
Q ss_pred EEEEEcCCCce-eeeeeeeccCCcccceEEe-cCcEEEEEECCCCeEEEEEeecCe
Q 003792 204 AYQINAMNGEL-LNHETAAFSGGFVGDVALV-SSDTLVTLDTTRSILVTVSFKNRK 257 (795)
Q Consensus 204 v~ald~~tG~~-~w~~~v~~~~~~~~~~~~v-g~~~lv~~d~~~~~L~v~~l~sg~ 257 (795)
+..+|..+... +..........+ ..+.+- +.++++......+.+++.++.++.
T Consensus 239 VklWDlr~~~~p~~~~~~d~~~~~-~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~ 293 (493)
T PTZ00421 239 IMLWDTRKMASPYSTVDLDQSSAL-FIPFFDEDTNLLYIGSKGEGNIRCFELMNER 293 (493)
T ss_pred EEEEeCCCCCCceeEeccCCCCce-EEEEEcCCCCEEEEEEeCCCeEEEEEeeCCc
Confidence 77778776542 221111111111 011121 334555444446789999998877
No 32
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=96.98 E-value=0.0013 Score=48.98 Aligned_cols=40 Identities=15% Similarity=0.205 Sum_probs=26.5
Q ss_pred CccceEEEcCCcceeeeeeeeeCCEEEEEEccCCeEEEEeCCC
Q 003792 73 GEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPD 115 (795)
Q Consensus 73 G~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~t 115 (795)
|+++|++.++.+ +.+. +...++.||+++.+++++|+|++|
T Consensus 1 G~~~W~~~~~~~--~~~~-~~v~~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 1 GKVLWSYDTGGP--IWSS-PAVAGGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp S-EEEEEE-SS-----S---EECTSEEEEE-TTSEEEEEETT-
T ss_pred CceeEEEECCCC--cCcC-CEEECCEEEEEcCCCEEEEEeCCC
Confidence 899999999765 4333 356778898888788999999975
No 33
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=96.90 E-value=1 Score=50.01 Aligned_cols=195 Identities=10% Similarity=0.148 Sum_probs=109.2
Q ss_pred EEEEeCC----CE--EEEEECcCCccceEEEcCCcceeeeeeeeeCCEEEEEEcc----CCeEEEEeCCC--CcEeEEEe
Q 003792 56 VVVSTEE----NV--IASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSD----GSTLRAWNLPD--GQMVWESF 123 (795)
Q Consensus 56 v~vat~~----g~--l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~~----g~~v~A~d~~t--G~llWe~~ 123 (795)
+||++.. +- ++.+|.++|++--.+..........+.....+..+|+... .+.|.+|+..+ |++.--..
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~ 81 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNS 81 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeee
Confidence 6777765 33 4566779998877776543332333322335667776533 45777776554 88776665
Q ss_pred ccCccccCCceeccccccccC-CCeEEEE--eCCEEEEEECCC-CcEEEEE-----eccCcc------eeeeeEEEEecC
Q 003792 124 LRGSKHSKPLLLVPTNLKVDK-DSLILVS--SKGCLHAVSSID-GEILWTR-----DFAAES------VEVQQVIQLDES 188 (795)
Q Consensus 124 ~~~~~~s~~~~~~~~~~~~~~-~~~V~V~--~~g~l~ald~~t-G~~~W~~-----~~~~~~------~~~~~vv~s~~~ 188 (795)
..... ..+..+ ..+. .+.+++. .+|.+..++..+ |++.-.. ....+. .-+-++....++
T Consensus 82 ~~~~g--~~p~~i----~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg 155 (345)
T PF10282_consen 82 VPSGG--SSPCHI----AVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDG 155 (345)
T ss_dssp EEESS--SCEEEE----EECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTS
T ss_pred eccCC--CCcEEE----EEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCC
Confidence 54221 122222 2222 4567775 388888887765 7654432 111110 113334333445
Q ss_pred CEEEEEEecCCceeEEEEEEcCCCceeeeeeeeccCCcccceEEe--cCcEEEEEECCCCeEEEEEee--cCe
Q 003792 189 DQIYVVGYAGSSQFHAYQINAMNGELLNHETAAFSGGFVGDVALV--SSDTLVTLDTTRSILVTVSFK--NRK 257 (795)
Q Consensus 189 ~~Vyvv~~~g~~~~~v~ald~~tG~~~w~~~v~~~~~~~~~~~~v--g~~~lv~~d~~~~~L~v~~l~--sg~ 257 (795)
..+|+. .-|...+.++.+|..+|++.....+..+.+-....+.. +++++++++...+.+.+.++. +|.
T Consensus 156 ~~v~v~-dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~ 227 (345)
T PF10282_consen 156 RFVYVP-DLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGS 227 (345)
T ss_dssp SEEEEE-ETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTE
T ss_pred CEEEEE-ecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCc
Confidence 667764 44666788888888887766545454443332223333 446777888788899999998 555
No 34
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=96.85 E-value=0.0021 Score=47.78 Aligned_cols=40 Identities=23% Similarity=0.355 Sum_probs=27.2
Q ss_pred cceeEEEeccCceeeeeeeeeccCCCEEEEEeCCCEEEEEECcC
Q 003792 29 GLMDWHQQYIGKVKHAVFHTQKTGRKRVVVSTEENVIASLDLRH 72 (795)
Q Consensus 29 G~~dW~~~~vG~~~~~~f~~~~~~~~~v~vat~~g~l~ALn~~t 72 (795)
|+..|++++-|.. +..|...+++||+++.+|.|+|||++|
T Consensus 1 G~~~W~~~~~~~~----~~~~~v~~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 1 GKVLWSYDTGGPI----WSSPAVAGGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp S-EEEEEE-SS-------S--EECTSEEEEE-TTSEEEEEETT-
T ss_pred CceeEEEECCCCc----CcCCEEECCEEEEEcCCCEEEEEeCCC
Confidence 6889999885532 344566799999999999999999986
No 35
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=96.82 E-value=0.0015 Score=46.12 Aligned_cols=27 Identities=30% Similarity=0.601 Sum_probs=25.3
Q ss_pred CCEEEEEeCCCEEEEEECcCCccceEE
Q 003792 53 RKRVVVSTEENVIASLDLRHGEIFWRH 79 (795)
Q Consensus 53 ~~~v~vat~~g~l~ALn~~tG~ivWR~ 79 (795)
++.+|+++.+|.|+|+|+++|+++|++
T Consensus 6 ~~~v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 6 DGTVYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred CCEEEEEcCCCEEEEEEcccCcEEEEc
Confidence 568999999999999999999999986
No 36
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=96.57 E-value=0.0049 Score=45.37 Aligned_cols=31 Identities=13% Similarity=0.232 Sum_probs=26.8
Q ss_pred EEEEEccCCeEEEEeCCCCcEeEEEeccCcc
Q 003792 98 VITLSSDGSTLRAWNLPDGQMVWESFLRGSK 128 (795)
Q Consensus 98 ~V~Vs~~g~~v~A~d~~tG~llWe~~~~~~~ 128 (795)
.|+++..++.|+|+|+.||+++|+++.....
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~~~~~ 32 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQTGPPV 32 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEESSSGG
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeeeCCCCC
Confidence 5677777789999999999999999987654
No 37
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=96.51 E-value=0.14 Score=55.52 Aligned_cols=156 Identities=14% Similarity=0.142 Sum_probs=97.1
Q ss_pred cCCCEEEEEeCCCEEEEEECcCCccceEEEcCCcceeeeeeeeeCCEEEEEEccCCeEEEEeCCCCcEeEEEeccCccc-
Q 003792 51 TGRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKH- 129 (795)
Q Consensus 51 ~~~~~v~vat~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~~~~~~~- 129 (795)
+++++++++.++|.|...|++||+++-+..-...............-.++-++.++.+...+..+|+++--+.-..+.+
T Consensus 200 pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~ 279 (399)
T KOG0296|consen 200 PDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELK 279 (399)
T ss_pred CCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCcccc
Confidence 3588899999999999999999999988764333212222112233344434456788888888999887776322221
Q ss_pred ------cCCceeccccccccCCCe-EEE-Ee-CCEEEEEECCCCcEEEEEeccCcceeeeeEEEEecCCEEEEEEecCCc
Q 003792 130 ------SKPLLLVPTNLKVDKDSL-ILV-SS-KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSS 200 (795)
Q Consensus 130 ------s~~~~~~~~~~~~~~~~~-V~V-~~-~g~l~ald~~tG~~~W~~~~~~~~~~~~~vv~s~~~~~Vyvv~~~g~~ 200 (795)
.......+. .... +.. .+ +|+|.-+|.+.-+++-....+.+.. ++... ....+|..+.+|
T Consensus 280 ~~~e~~~esve~~~~-----ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~---~l~w~-~t~~l~t~c~~g-- 348 (399)
T KOG0296|consen 280 PSQEELDESVESIPS-----SSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVT---KLKWL-NTDYLLTACANG-- 348 (399)
T ss_pred ccchhhhhhhhhccc-----ccccchhhcccccceEEEEecccchhheeccCCCceE---EEEEc-CcchheeeccCc--
Confidence 001111110 0111 111 22 8888888887766665555554422 33321 246777777777
Q ss_pred eeEEEEEEcCCCceeeeee
Q 003792 201 QFHAYQINAMNGELLNHET 219 (795)
Q Consensus 201 ~~~v~ald~~tG~~~w~~~ 219 (795)
+|..+|+.||+.+..++
T Consensus 349 --~v~~wDaRtG~l~~~y~ 365 (399)
T KOG0296|consen 349 --KVRQWDARTGQLKFTYT 365 (399)
T ss_pred --eEEeeeccccceEEEEe
Confidence 89999999999998885
No 38
>KOG2103 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.50 E-value=0.064 Score=63.45 Aligned_cols=191 Identities=16% Similarity=0.234 Sum_probs=111.7
Q ss_pred cccceeEEEeccCceeeeeeeeeccCCCEEEEEeCCCEEEEEECcCCccceEEEcCCcceeeeeeeeeCCEEEEEEccCC
Q 003792 27 QVGLMDWHQQYIGKVKHAVFHTQKTGRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGS 106 (795)
Q Consensus 27 q~G~~dW~~~~vG~~~~~~f~~~~~~~~~v~vat~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~~g~ 106 (795)
-.|.+-|||-+-++.... +-+- .-++..+...+.+-|.++|...|...+..+ ..++......++.++++
T Consensus 65 ~tGei~WRqvl~~~~~~~--~~~~----~~~iS~dg~~lr~wn~~~g~l~~~i~l~~g--~~~~~~~v~~~i~v~~g--- 133 (910)
T KOG2103|consen 65 RTGEIIWRQVLEPKTSGL--GVPL----TNTISVDGRYLRSWNTNNGILDWEIELADG--FKGLLLEVNKGIAVLNG--- 133 (910)
T ss_pred cCCcEEEEEeccCCCccc--Ccce----eEEEccCCcEEEeecCCCceeeeecccccc--cceeEEEEccceEEEcc---
Confidence 368999998774443322 1110 125555566799999999999999999776 23222234444444443
Q ss_pred eEEEEeCCCCcEeEEEeccCccc--cCCceeccccccccCCCeEEEE-----eCCEEEEEECCCCcEE-EEEeccCccee
Q 003792 107 TLRAWNLPDGQMVWESFLRGSKH--SKPLLLVPTNLKVDKDSLILVS-----SKGCLHAVSSIDGEIL-WTRDFAAESVE 178 (795)
Q Consensus 107 ~v~A~d~~tG~llWe~~~~~~~~--s~~~~~~~~~~~~~~~~~V~V~-----~~g~l~ald~~tG~~~-W~~~~~~~~~~ 178 (795)
|....|.+.|+..+..... -+++.+. ..+.++++ ++..+++++..+|.+. |+...-.|+..
T Consensus 134 ----~~~~~g~l~w~~~~~~~~~~~~q~~~~~-------~t~vvy~~~~l~~s~~~V~~~~~~~g~v~~~~~~v~~pw~~ 202 (910)
T KOG2103|consen 134 ----HTRKFGELKWVESFSISIEEDLQDAKIY-------GTDVVYVLGLLKRSGSCVQQVFSDDGEVTGPQSTVLGPWFK 202 (910)
T ss_pred ----eeccccceeehhhccccchhHHHHhhhc-------cCcEEEEEEEEecCCceEEEEEccCCcEecceeeeecCccc
Confidence 8899999999998875432 0112121 13444442 3668999999999988 99888777765
Q ss_pred eeeEEEEecCCEEEEEEecCCceeEEEEEEcCCCceee-eeeeeccCCcccceEEecC---cEEEEEECCCC
Q 003792 179 VQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLN-HETAAFSGGFVGDVALVSS---DTLVTLDTTRS 246 (795)
Q Consensus 179 ~~~vv~s~~~~~Vyvv~~~g~~~~~v~ald~~tG~~~w-~~~v~~~~~~~~~~~~vg~---~~lv~~d~~~~ 246 (795)
+..| +...+ ++.++..| .+..+|...++.-- +-....-..+.+..+.+.+ +.+||+++.++
T Consensus 203 ~~~c--~~~k~-~vl~~s~g----~l~s~di~~~~~~~~q~~~e~l~~l~g~~i~~~g~~~~~~V~V~s~~~ 267 (910)
T KOG2103|consen 203 VLSC--STDKE-VVLVCSNG----TLISLDISSQKVQISQLLAEILLPLTGDLILLDGNKHTAMVSVNSSSN 267 (910)
T ss_pred cccc--ccccc-eEEEcCCC----CeEEEEEEeeccchhhhhhhhhhccCCceEEecCCCceeEEEEecCCC
Confidence 5555 22334 44456666 35555554433221 1111112233344444422 37888886433
No 39
>PTZ00420 coronin; Provisional
Probab=96.45 E-value=1.2 Score=52.86 Aligned_cols=193 Identities=11% Similarity=0.077 Sum_probs=104.9
Q ss_pred CCEEEEEeCCCEEEEEECcCCccce------EEEcCC-cceeeeeeee-eCCEEEEEEccCCeEEEEeCCCCcEeEEEec
Q 003792 53 RKRVVVSTEENVIASLDLRHGEIFW------RHVLGI-NDVVDGIDIA-LGKYVITLSSDGSTLRAWNLPDGQMVWESFL 124 (795)
Q Consensus 53 ~~~v~vat~~g~l~ALn~~tG~ivW------R~~l~~-~~~i~~l~~~-~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~~ 124 (795)
++.++.++++|.|.-.|..++...- ...+.. ...+..+... .+..+++.++.++.++.||..+|+.+++...
T Consensus 87 ~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~ 166 (568)
T PTZ00420 87 SEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINM 166 (568)
T ss_pred CCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEec
Confidence 4578889999999999988764311 111211 1123322112 2444444455578999999999999888764
Q ss_pred cCccccCCceeccccccccCCCeEEEE--eCCEEEEEECCCCcEEEEEeccCcceeeeeEEE----EecCCEEEEEEecC
Q 003792 125 RGSKHSKPLLLVPTNLKVDKDSLILVS--SKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQ----LDESDQIYVVGYAG 198 (795)
Q Consensus 125 ~~~~~s~~~~~~~~~~~~~~~~~V~V~--~~g~l~ald~~tG~~~W~~~~~~~~~~~~~vv~----s~~~~~Vyvv~~~g 198 (795)
..... .+ ....++.+++. .++.++.+|..+|+..-++....+.. ....+. +..++.+...|+++
T Consensus 167 ~~~V~--Sl-------swspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~-~s~~v~~~~fs~d~~~IlTtG~d~ 236 (568)
T PTZ00420 167 PKKLS--SL-------KWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGK-NTKNIWIDGLGGDDNYILSTGFSK 236 (568)
T ss_pred CCcEE--EE-------EECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCc-eeEEEEeeeEcCCCCEEEEEEcCC
Confidence 33221 11 12224555554 38899999999999886665433321 111111 12344566656665
Q ss_pred CceeEEEEEEcCC-CceeeeeeeeccCCcccceEE-ecCc-EEEEEECCCCeEEEEEeecCe
Q 003792 199 SSQFHAYQINAMN-GELLNHETAAFSGGFVGDVAL-VSSD-TLVTLDTTRSILVTVSFKNRK 257 (795)
Q Consensus 199 ~~~~~v~ald~~t-G~~~w~~~v~~~~~~~~~~~~-vg~~-~lv~~d~~~~~L~v~~l~sg~ 257 (795)
.....+.-.|+.+ ++++....+....+.- .+.+ ...+ ++++.. ..+.+++.++..+.
T Consensus 237 ~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L-~p~~D~~tg~l~lsGk-GD~tIr~~e~~~~~ 296 (568)
T PTZ00420 237 NNMREMKLWDLKNTTSALVTMSIDNASAPL-IPHYDESTGLIYLIGK-GDGNCRYYQHSLGS 296 (568)
T ss_pred CCccEEEEEECCCCCCceEEEEecCCccce-EEeeeCCCCCEEEEEE-CCCeEEEEEccCCc
Confidence 3334567778774 5666444222211100 0111 1223 444443 45778888887665
No 40
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=96.33 E-value=0.14 Score=59.55 Aligned_cols=150 Identities=19% Similarity=0.254 Sum_probs=81.0
Q ss_pred CCEEEEEeC-----CCEEEEEECcCCccceEEEcCCcceeeeeeeeeCCEEEEEEccCCeEEEEeCCCCcEeEEEeccCc
Q 003792 53 RKRVVVSTE-----ENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGS 127 (795)
Q Consensus 53 ~~~v~vat~-----~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~~~~~ 127 (795)
.+.+|+.+. ....+++|. +|.++|...+....... +. ...++.++.+.. ..++.+|. .|+++|++.+...
T Consensus 113 ~~gl~~~~~~~~~~~~~~~~iD~-~G~Vrw~~~~~~~~~~~-~~-~l~nG~ll~~~~-~~~~e~D~-~G~v~~~~~l~~~ 187 (477)
T PF05935_consen 113 EDGLYFVNGNDWDSSSYTYLIDN-NGDVRWYLPLDSGSDNS-FK-QLPNGNLLIGSG-NRLYEIDL-LGKVIWEYDLPGG 187 (477)
T ss_dssp TT-EEEEEETT--BEEEEEEEET-TS-EEEEE-GGGT--SS-EE-E-TTS-EEEEEB-TEEEEE-T-T--EEEEEE--TT
T ss_pred CCcEEEEeCCCCCCCceEEEECC-CccEEEEEccCccccce-ee-EcCCCCEEEecC-CceEEEcC-CCCEEEeeecCCc
Confidence 445676666 678999995 89999999987663211 21 234444443433 68999998 6999999999874
Q ss_pred c--ccCCceeccccccccCCCeEEEE-e--------------CCEEEEEECCCCcEEEEEeccCcc---ee---------
Q 003792 128 K--HSKPLLLVPTNLKVDKDSLILVS-S--------------KGCLHAVSSIDGEILWTRDFAAES---VE--------- 178 (795)
Q Consensus 128 ~--~s~~~~~~~~~~~~~~~~~V~V~-~--------------~g~l~ald~~tG~~~W~~~~~~~~---~~--------- 178 (795)
. ..-+....+ ++.++++ . ...+.-+| .+|+++|+|+...-- ..
T Consensus 188 ~~~~HHD~~~l~-------nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~ 259 (477)
T PF05935_consen 188 YYDFHHDIDELP-------NGNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYG 259 (477)
T ss_dssp EE-B-S-EEE-T-------TS-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SS
T ss_pred ccccccccEECC-------CCCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCccccccccccccc
Confidence 3 112222222 3444442 3 46799999 999999999774311 00
Q ss_pred ------------ee-eEEEEecCCEEEEEEecCCceeEEEEEEcCCCceeeee
Q 003792 179 ------------VQ-QVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHE 218 (795)
Q Consensus 179 ------------~~-~vv~s~~~~~Vyvv~~~g~~~~~v~ald~~tG~~~w~~ 218 (795)
.. .+.+-..++.+++.+..-+ .|..+|..||++.|-.
T Consensus 260 ~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s---~V~~Id~~t~~i~Wil 309 (477)
T PF05935_consen 260 DISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQS---AVIKIDYRTGKIKWIL 309 (477)
T ss_dssp SSS-SSTTSBS--EEEEEEETTTTEEEEEETTT----EEEEEE-TTS-EEEEE
T ss_pred ccccCCCCCCccccCccEEeCCCCeEEEEcCcce---EEEEEECCCCcEEEEe
Confidence 00 1111123566666444333 6899999999999987
No 41
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=95.98 E-value=1.1 Score=50.21 Aligned_cols=212 Identities=15% Similarity=0.145 Sum_probs=116.7
Q ss_pred cCceeeeeeeeeccCCCEEEEEeCCCE--EEEEECcCCccceEEEcCCcceeeeee-eeeCCEEEEEEccCCeEEEEeCC
Q 003792 38 IGKVKHAVFHTQKTGRKRVVVSTEENV--IASLDLRHGEIFWRHVLGINDVVDGID-IALGKYVITLSSDGSTLRAWNLP 114 (795)
Q Consensus 38 vG~~~~~~f~~~~~~~~~v~vat~~g~--l~ALn~~tG~ivWR~~l~~~~~i~~l~-~~~g~~~V~Vs~~g~~v~A~d~~ 114 (795)
.|......||. ....+.|+.-+|. |+.+|-++-..+=...|+.- +|.... .+.|...++.++....++.||..
T Consensus 213 ~~~I~sv~FHp---~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~f-Pi~~a~f~p~G~~~i~~s~rrky~ysyDle 288 (514)
T KOG2055|consen 213 HGGITSVQFHP---TAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKF-PIQKAEFAPNGHSVIFTSGRRKYLYSYDLE 288 (514)
T ss_pred cCCceEEEecC---CCceEEEecCCCcEEEEEecCccChhheeeeeccC-ccceeeecCCCceEEEecccceEEEEeecc
Confidence 34444556773 2446888887774 67887666655555445432 233221 23455577778777899999999
Q ss_pred CCcEeEEEeccCccccCCceeccccccccCCCeEEEE-eCCEEEEEECCCCcEEEEEeccCcceeeeeEEEEecCCEEEE
Q 003792 115 DGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVS-SKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYV 193 (795)
Q Consensus 115 tG~llWe~~~~~~~~s~~~~~~~~~~~~~~~~~V~V~-~~g~l~ald~~tG~~~W~~~~~~~~~~~~~vv~s~~~~~Vyv 193 (795)
++++.=--+..+-. .+....... ..+ +..+++. ..|.++.|.+.||+..=+++.++... .+..+..+..+++
T Consensus 289 ~ak~~k~~~~~g~e-~~~~e~FeV--Shd-~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~---~~~fsSdsk~l~~ 361 (514)
T KOG2055|consen 289 TAKVTKLKPPYGVE-EKSMERFEV--SHD-SNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVS---DFTFSSDSKELLA 361 (514)
T ss_pred ccccccccCCCCcc-cchhheeEe--cCC-CCeEEEcccCceEEeehhhhhhhhheeeeccEEe---eEEEecCCcEEEE
Confidence 98865222221111 011222210 111 2333333 48999999999998877777654322 1222345566777
Q ss_pred EEecCCceeEEEEEEcCCCceeeeeeeeccCCcccc--eEEecCcEEEEEECCCCeEEEEEeecCeeeeEEEeecc
Q 003792 194 VGYAGSSQFHAYQINAMNGELLNHETAAFSGGFVGD--VALVSSDTLVTLDTTRSILVTVSFKNRKIAFQETHLSN 267 (795)
Q Consensus 194 v~~~g~~~~~v~ald~~tG~~~w~~~v~~~~~~~~~--~~~vg~~~lv~~d~~~~~L~v~~l~sg~~~~~~~~l~~ 267 (795)
.+..| .|+.+|+..-..+... .-...+.+. |.-..+.+++|.. +.|.+.+.+.++--.+....|+..
T Consensus 362 ~~~~G----eV~v~nl~~~~~~~rf--~D~G~v~gts~~~S~ng~ylA~GS-~~GiVNIYd~~s~~~s~~PkPik~ 430 (514)
T KOG2055|consen 362 SGGTG----EVYVWNLRQNSCLHRF--VDDGSVHGTSLCISLNGSYLATGS-DSGIVNIYDGNSCFASTNPKPIKT 430 (514)
T ss_pred EcCCc----eEEEEecCCcceEEEE--eecCccceeeeeecCCCceEEecc-CcceEEEeccchhhccCCCCchhh
Confidence 66666 7888888766544333 223444442 2222444665554 567777777665332233344443
No 42
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=95.96 E-value=4.1 Score=46.52 Aligned_cols=153 Identities=19% Similarity=0.216 Sum_probs=99.1
Q ss_pred ccCCCEEEEEeCCCEEEEEECcCCccceEEEcCCc--ceeeeee-eeeCCEEEEEEccCCeEEEEeCCCCcEeEEEeccC
Q 003792 50 KTGRKRVVVSTEENVIASLDLRHGEIFWRHVLGIN--DVVDGID-IALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRG 126 (795)
Q Consensus 50 ~~~~~~v~vat~~g~l~ALn~~tG~ivWR~~l~~~--~~i~~l~-~~~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~~~~ 126 (795)
++++.+...++.+|.++.+|-+||+.+=...-+.. +.|-++. -+.+..++++|++ ..++-||.++++++=++....
T Consensus 199 sPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaD-kt~KIWdVs~~slv~t~~~~~ 277 (603)
T KOG0318|consen 199 SPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSAD-KTIKIWDVSTNSLVSTWPMGS 277 (603)
T ss_pred CCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCC-ceEEEEEeeccceEEEeecCC
Confidence 34577788888999999999999999877543222 3343331 1356778887775 689999999999998888776
Q ss_pred ccccCCceeccccccccCCCeEEEEeCCEEEEEECCCCcEEEEEeccCcceeeeeEEEEecCCEEEEEEecCCceeEEEE
Q 003792 127 SKHSKPLLLVPTNLKVDKDSLILVSSKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQ 206 (795)
Q Consensus 127 ~~~s~~~~~~~~~~~~~~~~~V~V~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~vv~s~~~~~Vyvv~~~g~~~~~v~a 206 (795)
...-+ .++- ..-++..+-|.-+|.+.-|++.++++.=...-.........+ +..+..+|-.+++| .+..
T Consensus 278 ~v~dq---qvG~--lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv--~~d~~~i~SgsyDG----~I~~ 346 (603)
T KOG0318|consen 278 TVEDQ---QVGC--LWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTV--SPDGKTIYSGSYDG----HINS 346 (603)
T ss_pred chhce---EEEE--EEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEE--cCCCCEEEeeccCc----eEEE
Confidence 53211 2220 122233333345999999999999876655444433322222 23455677666666 6788
Q ss_pred EEcCCCce
Q 003792 207 INAMNGEL 214 (795)
Q Consensus 207 ld~~tG~~ 214 (795)
.|..+|.-
T Consensus 347 W~~~~g~~ 354 (603)
T KOG0318|consen 347 WDSGSGTS 354 (603)
T ss_pred EecCCccc
Confidence 88777653
No 43
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=95.95 E-value=3.1 Score=49.95 Aligned_cols=186 Identities=14% Similarity=0.129 Sum_probs=107.5
Q ss_pred CCEEEEEeCCCEEEEEECcCC-ccceEE--EcCCcce-eee-eeeeeCCEEEEEEccCCeEEEEeCCCCcEeEEEeccCc
Q 003792 53 RKRVVVSTEENVIASLDLRHG-EIFWRH--VLGINDV-VDG-IDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGS 127 (795)
Q Consensus 53 ~~~v~vat~~g~l~ALn~~tG-~ivWR~--~l~~~~~-i~~-l~~~~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~~~~~ 127 (795)
+..++..+.+|.+.-.+-.++ +..--+ .++..+. |.. +++.--=+-|+++..+|.+..||..+|+++.+++....
T Consensus 124 Ge~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s 203 (910)
T KOG1539|consen 124 GEHLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALLHPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFS 203 (910)
T ss_pred cceEEEEEccCcEEEEEeccccccccccceeeeccCCceeeEecchhheeeEEEeecCCcEEEEEeccCcEEEEeccccc
Confidence 445666677777766666554 221111 0011111 221 22222123455566567999999999999999987653
Q ss_pred cccCCceeccccccccCCCeEEEE-eCCEEEEEECCCCcEEEEEeccCcceeeeeEEEEecCCEEEEEEecCCceeEEEE
Q 003792 128 KHSKPLLLVPTNLKVDKDSLILVS-SKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQ 206 (795)
Q Consensus 128 ~~s~~~~~~~~~~~~~~~~~V~V~-~~g~l~ald~~tG~~~W~~~~~~~~~~~~~vv~s~~~~~Vyvv~~~g~~~~~v~a 206 (795)
.. . .+.+ .++ -+.|.|. .+|++.-+|.+.|+.+-+++.+.+... .+.-..++..+.+.+-.. ..+.-
T Consensus 204 ~I-T--~ieq---sPa-LDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~Vt--slSFrtDG~p~las~~~~---G~m~~ 271 (910)
T KOG1539|consen 204 RI-T--AIEQ---SPA-LDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVT--SLSFRTDGNPLLASGRSN---GDMAF 271 (910)
T ss_pred ce-e--Eecc---CCc-ceEEEEeccCceEEEEEcccCcEEEEEEcccccee--EEEeccCCCeeEEeccCC---ceEEE
Confidence 32 1 1221 111 2334444 599999999999999999988743321 222123455566555432 26888
Q ss_pred EEcCCCceeeeeeeeccCCcccceEEecCcEEEEEECCCCeEEEE
Q 003792 207 INAMNGELLNHETAAFSGGFVGDVALVSSDTLVTLDTTRSILVTV 251 (795)
Q Consensus 207 ld~~tG~~~w~~~v~~~~~~~~~~~~vg~~~lv~~d~~~~~L~v~ 251 (795)
.|++.-+.+|+.+-+...++.+...+.+..+++...++ .+|++-
T Consensus 272 wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~D-nSlk~~ 315 (910)
T KOG1539|consen 272 WDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGAD-NSLKVW 315 (910)
T ss_pred EEcCCCeeeeeeeccccCCcccceecCCCceEeeccCC-CceeEE
Confidence 89988888888875555556555555566666555433 344433
No 44
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=95.91 E-value=0.013 Score=41.27 Aligned_cols=29 Identities=24% Similarity=0.445 Sum_probs=24.2
Q ss_pred eCCEEEEEEccCCeEEEEeCCCCcEeEEE
Q 003792 94 LGKYVITLSSDGSTLRAWNLPDGQMVWES 122 (795)
Q Consensus 94 ~g~~~V~Vs~~g~~v~A~d~~tG~llWe~ 122 (795)
..++.+++++.++.++|+|+++|+++|+.
T Consensus 4 ~~~~~v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 4 LSDGTVYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred EECCEEEEEcCCCEEEEEEcccCcEEEEc
Confidence 34557777776789999999999999986
No 45
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=95.60 E-value=3.4 Score=42.83 Aligned_cols=146 Identities=14% Similarity=0.125 Sum_probs=80.6
Q ss_pred eCCEEEEEEccCCeEEEEeCCCCcEeEEEeccCccccCCceeccccccccCCCeEEEE--eCCEEEEEECCCCcEEEEEe
Q 003792 94 LGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVS--SKGCLHAVSSIDGEILWTRD 171 (795)
Q Consensus 94 ~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~~~~~~~s~~~~~~~~~~~~~~~~~V~V~--~~g~l~ald~~tG~~~W~~~ 171 (795)
.|+..++ .|.+++|+.||+..|.++=++...+... .++... .++.=+.. .+..++..|..||++.-++.
T Consensus 28 dGnY~lt-cGsdrtvrLWNp~rg~liktYsghG~EV-lD~~~s-------~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~r 98 (307)
T KOG0316|consen 28 DGNYCLT-CGSDRTVRLWNPLRGALIKTYSGHGHEV-LDAALS-------SDNSKFASCGGDKAVQVWDVNTGKVDRRFR 98 (307)
T ss_pred CCCEEEE-cCCCceEEeecccccceeeeecCCCcee-eecccc-------ccccccccCCCCceEEEEEcccCeeeeecc
Confidence 3555666 4556899999999999999998776543 222121 13333333 36678899999999876665
Q ss_pred ccCcceeeeeEEEEecCCEEEEEEecCCceeEEEEEEcCCCceeeeeeeecc-CCcccceEEecCcEEEEEECCCCeEEE
Q 003792 172 FAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAFS-GGFVGDVALVSSDTLVTLDTTRSILVT 250 (795)
Q Consensus 172 ~~~~~~~~~~vv~s~~~~~Vyvv~~~g~~~~~v~ald~~tG~~~w~~~v~~~-~~~~~~~~~vg~~~lv~~d~~~~~L~v 250 (795)
-.....+.-+. -.....|+-.+++. .+.+.|-.+-..---+.+... -++ ..+-+.+..++.... .|.+..
T Consensus 99 gH~aqVNtV~f--NeesSVv~SgsfD~----s~r~wDCRS~s~ePiQildea~D~V--~Si~v~~heIvaGS~-DGtvRt 169 (307)
T KOG0316|consen 99 GHLAQVNTVRF--NEESSVVASGSFDS----SVRLWDCRSRSFEPIQILDEAKDGV--SSIDVAEHEIVAGSV-DGTVRT 169 (307)
T ss_pred cccceeeEEEe--cCcceEEEeccccc----eeEEEEcccCCCCccchhhhhcCce--eEEEecccEEEeecc-CCcEEE
Confidence 54332211111 11222233333332 566667654332211111111 111 112234455655553 589999
Q ss_pred EEeecCe
Q 003792 251 VSFKNRK 257 (795)
Q Consensus 251 ~~l~sg~ 257 (795)
.|+..|+
T Consensus 170 ydiR~G~ 176 (307)
T KOG0316|consen 170 YDIRKGT 176 (307)
T ss_pred EEeecce
Confidence 9999987
No 46
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=95.55 E-value=2.9 Score=49.03 Aligned_cols=188 Identities=13% Similarity=0.144 Sum_probs=118.9
Q ss_pred CCEEEEEeCCCEEEEEECcCCccceEEEcC----CcceeeeeeeeeCCEEEEEEccCCeEEEEeCCCCcEeEEEeccCcc
Q 003792 53 RKRVVVSTEENVIASLDLRHGEIFWRHVLG----INDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSK 128 (795)
Q Consensus 53 ~~~v~vat~~g~l~ALn~~tG~ivWR~~l~----~~~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~~~~~~ 128 (795)
++.+-++-.+|.|--.|++. -|-+... .+..+.++.-+.++.+..++. .+.+.-||+.+|+.+-+....+..
T Consensus 37 S~~lAvsRt~g~IEiwN~~~---~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~-sg~i~EwDl~~lk~~~~~d~~gg~ 112 (691)
T KOG2048|consen 37 SNQLAVSRTDGNIEIWNLSN---NWFLEPVIHGPEDRSIESLAWAEGGRLFSSGL-SGSITEWDLHTLKQKYNIDSNGGA 112 (691)
T ss_pred CCceeeeccCCcEEEEccCC---CceeeEEEecCCCCceeeEEEccCCeEEeecC-CceEEEEecccCceeEEecCCCcc
Confidence 55566777788888888887 4776552 223455552223444444343 568999999999999988876654
Q ss_pred ccCCceeccccccccCCCeEEEE-eCCEEEEEECCCCcEEEEEeccCcceeeeeEEEEecCCEEEEEEecCCceeEEEEE
Q 003792 129 HSKPLLLVPTNLKVDKDSLILVS-SKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQI 207 (795)
Q Consensus 129 ~s~~~~~~~~~~~~~~~~~V~V~-~~g~l~ald~~tG~~~W~~~~~~~~~~~~~vv~s~~~~~Vyvv~~~g~~~~~v~al 207 (795)
. +.+. .-.....+.|. .+|.++-++...|+......++........+....++-.++..+.+| .+.+.
T Consensus 113 I----Wsia---i~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg----~Iriw 181 (691)
T KOG2048|consen 113 I----WSIA---INPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDG----VIRIW 181 (691)
T ss_pred e----eEEE---eCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCc----eEEEE
Confidence 3 3332 11113456666 48899999999999988887765433222232112232345444444 79999
Q ss_pred EcCCCceeeeeeeeccCCccc-------ceEEecCcEEEEEECCCCeEEEEEeecCe
Q 003792 208 NAMNGELLNHETAAFSGGFVG-------DVALVSSDTLVTLDTTRSILVTVSFKNRK 257 (795)
Q Consensus 208 d~~tG~~~w~~~v~~~~~~~~-------~~~~vg~~~lv~~d~~~~~L~v~~l~sg~ 257 (795)
|+++|+.+.-.+... .++.. ++.++..+.++|.|+ +|.+..=|-..|+
T Consensus 182 d~~~~~t~~~~~~~~-d~l~k~~~~iVWSv~~Lrd~tI~sgDS-~G~V~FWd~~~gT 236 (691)
T KOG2048|consen 182 DVKSGQTLHIITMQL-DRLSKREPTIVWSVLFLRDSTIASGDS-AGTVTFWDSIFGT 236 (691)
T ss_pred EcCCCceEEEeeecc-cccccCCceEEEEEEEeecCcEEEecC-CceEEEEcccCcc
Confidence 999999887221111 11211 344568889999996 5888888887777
No 47
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=95.43 E-value=5.1 Score=43.79 Aligned_cols=197 Identities=15% Similarity=0.169 Sum_probs=93.6
Q ss_pred cCCCEEEEEeC-CCEEEEEECc-CCccceEEEcCCcceeeeeeeeeCCEEEEEEc-cCCeEEEEeCC-CCcEe-EEEecc
Q 003792 51 TGRKRVVVSTE-ENVIASLDLR-HGEIFWRHVLGINDVVDGIDIALGKYVITLSS-DGSTLRAWNLP-DGQMV-WESFLR 125 (795)
Q Consensus 51 ~~~~~v~vat~-~g~l~ALn~~-tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~-~g~~v~A~d~~-tG~ll-We~~~~ 125 (795)
++++.+|+++. ++.|..++.. +|++.=.......+....+.....+..+++++ .++.+..||.+ +|.+. -.....
T Consensus 44 pd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~ 123 (330)
T PRK11028 44 PDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE 123 (330)
T ss_pred CCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc
Confidence 34667898875 5667665553 56532111111111122332223455677655 35789999886 45321 111111
Q ss_pred CccccCCceeccccccccCCCeEEEE--eCCEEEEEECCC-CcEE----EEEeccCcceeeeeEEEEecCCEEEEEEecC
Q 003792 126 GSKHSKPLLLVPTNLKVDKDSLILVS--SKGCLHAVSSID-GEIL----WTRDFAAESVEVQQVIQLDESDQIYVVGYAG 198 (795)
Q Consensus 126 ~~~~s~~~~~~~~~~~~~~~~~V~V~--~~g~l~ald~~t-G~~~----W~~~~~~~~~~~~~vv~s~~~~~Vyvv~~~g 198 (795)
... ....+.- ..+ .+.++|. .++.|..+|..+ |... .....+.+. .|..+....++..+|++.. +
T Consensus 124 ~~~--~~~~~~~---~p~-g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~-~p~~~~~~pdg~~lyv~~~-~ 195 (330)
T PRK11028 124 GLE--GCHSANI---DPD-NRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGA-GPRHMVFHPNQQYAYCVNE-L 195 (330)
T ss_pred CCC--cccEeEe---CCC-CCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCC-CCceEEECCCCCEEEEEec-C
Confidence 110 0011110 112 3566665 378888888866 4321 222222221 2444543445567777554 2
Q ss_pred CceeEEEEEEcCCCceeeeeeee-ccCCccc-----ceEE-ecCcEEEEEECCCCeEEEEEeec
Q 003792 199 SSQFHAYQINAMNGELLNHETAA-FSGGFVG-----DVAL-VSSDTLVTLDTTRSILVTVSFKN 255 (795)
Q Consensus 199 ~~~~~v~ald~~tG~~~w~~~v~-~~~~~~~-----~~~~-vg~~~lv~~d~~~~~L~v~~l~s 255 (795)
+..+.++.++..+|+......+. .|....+ .+.+ .++.++++.+...+.+.+.++..
T Consensus 196 ~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~ 259 (330)
T PRK11028 196 NSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSE 259 (330)
T ss_pred CCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeC
Confidence 33455555555567654333332 2322221 1222 14456666666667888888765
No 48
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=95.19 E-value=4.3 Score=42.14 Aligned_cols=183 Identities=13% Similarity=0.128 Sum_probs=104.8
Q ss_pred ceeeeeeeeeccCCCEEEEEeCCCEEEEEECcCCccceEEEcCCcceeeeeeeeeCCEEEEEEccCCeEEEEeCCCCcEe
Q 003792 40 KVKHAVFHTQKTGRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMV 119 (795)
Q Consensus 40 ~~~~~~f~~~~~~~~~v~vat~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~tG~ll 119 (795)
.+....|. .+++...+...+-.|---||..|..+=.+.--..+..+.. ...++-.+.-+|.+..++.||.+||+.+
T Consensus 19 aV~avryN---~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~-~s~Dnskf~s~GgDk~v~vwDV~TGkv~ 94 (307)
T KOG0316|consen 19 AVRAVRYN---VDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAA-LSSDNSKFASCGGDKAVQVWDVNTGKVD 94 (307)
T ss_pred ceEEEEEc---cCCCEEEEcCCCceEEeecccccceeeeecCCCceeeecc-ccccccccccCCCCceEEEEEcccCeee
Confidence 33344454 3467777888888999999999988766544333222211 2233333443445678999999999999
Q ss_pred EEEeccCccccCCceeccccccccCCCeEEEE-e-CCEEEEEECCCCcEEEEEeccCcceeeeeEEE---------EecC
Q 003792 120 WESFLRGSKHSKPLLLVPTNLKVDKDSLILVS-S-KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQ---------LDES 188 (795)
Q Consensus 120 We~~~~~~~~s~~~~~~~~~~~~~~~~~V~V~-~-~g~l~ald~~tG~~~W~~~~~~~~~~~~~vv~---------s~~~ 188 (795)
-++....... . .+. ...+..|++. + +..+++.|-.+-.+ + |.|+.. -.++
T Consensus 95 Rr~rgH~aqV-N---tV~----fNeesSVv~SgsfD~s~r~wDCRS~s~-------e----PiQildea~D~V~Si~v~~ 155 (307)
T KOG0316|consen 95 RRFRGHLAQV-N---TVR----FNEESSVVASGSFDSSVRLWDCRSRSF-------E----PIQILDEAKDGVSSIDVAE 155 (307)
T ss_pred eeccccccee-e---EEE----ecCcceEEEeccccceeEEEEcccCCC-------C----ccchhhhhcCceeEEEecc
Confidence 8888776544 1 121 1112344443 2 77777776544221 1 222211 1234
Q ss_pred CEEEEEEecCCceeEEEEEEcCCCceeeeee---eec-cCCcccceEEecCcEEEEEECCCCeEEEEEeecCe
Q 003792 189 DQIYVVGYAGSSQFHAYQINAMNGELLNHET---AAF-SGGFVGDVALVSSDTLVTLDTTRSILVTVSFKNRK 257 (795)
Q Consensus 189 ~~Vyvv~~~g~~~~~v~ald~~tG~~~w~~~---v~~-~~~~~~~~~~vg~~~lv~~d~~~~~L~v~~l~sg~ 257 (795)
-.+...+.+| .+..+|...|++...+- +.. ...-++.|.+++ |+ ++.|+.+|-.+|+
T Consensus 156 heIvaGS~DG----tvRtydiR~G~l~sDy~g~pit~vs~s~d~nc~La~-----~l---~stlrLlDk~tGk 216 (307)
T KOG0316|consen 156 HEIVAGSVDG----TVRTYDIRKGTLSSDYFGHPITSVSFSKDGNCSLAS-----SL---DSTLRLLDKETGK 216 (307)
T ss_pred cEEEeeccCC----cEEEEEeecceeehhhcCCcceeEEecCCCCEEEEe-----ec---cceeeecccchhH
Confidence 4555555555 78889999998876652 111 011122344322 33 4678889988887
No 49
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=95.17 E-value=8.9 Score=45.77 Aligned_cols=108 Identities=14% Similarity=0.159 Sum_probs=71.8
Q ss_pred EEEEEccCCeEEEEeCCCCcEeEEEeccCccccCCceeccccccccCCCeEEEE-e-CCEEEEEECCCCcEEEEEeccCc
Q 003792 98 VITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVS-S-KGCLHAVSSIDGEILWTRDFAAE 175 (795)
Q Consensus 98 ~V~Vs~~g~~v~A~d~~tG~llWe~~~~~~~~s~~~~~~~~~~~~~~~~~V~V~-~-~g~l~ald~~tG~~~W~~~~~~~ 175 (795)
.+.-++++++|..||...|.=.=.+.-..... ....+ ...+.+++. + ||+|.|.|...++--=++..|.+
T Consensus 364 ~iaTG~eDgKVKvWn~~SgfC~vTFteHts~V-t~v~f-------~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p 435 (893)
T KOG0291|consen 364 LIATGAEDGKVKVWNTQSGFCFVTFTEHTSGV-TAVQF-------TARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEP 435 (893)
T ss_pred EEEeccCCCcEEEEeccCceEEEEeccCCCce-EEEEE-------EecCCEEEEeecCCeEEeeeecccceeeeecCCCc
Confidence 44436678899999999998877776555433 12222 224555554 4 99999999999988888877765
Q ss_pred ceeeeeEEEE-ecCCEEEEEEecCCceeEEEEEEcCCCceeeee
Q 003792 176 SVEVQQVIQL-DESDQIYVVGYAGSSQFHAYQINAMNGELLNHE 218 (795)
Q Consensus 176 ~~~~~~vv~s-~~~~~Vyvv~~~g~~~~~v~ald~~tG~~~w~~ 218 (795)
.. ..++-. .++..|++.+.+ ++.+...+.+||+.+.-.
T Consensus 436 ~Q--fscvavD~sGelV~AG~~d---~F~IfvWS~qTGqllDiL 474 (893)
T KOG0291|consen 436 IQ--FSCVAVDPSGELVCAGAQD---SFEIFVWSVQTGQLLDIL 474 (893)
T ss_pred ee--eeEEEEcCCCCEEEeeccc---eEEEEEEEeecCeeeehh
Confidence 43 234311 135556653333 467888999999998655
No 50
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=95.06 E-value=6.7 Score=43.02 Aligned_cols=151 Identities=13% Similarity=0.156 Sum_probs=81.0
Q ss_pred CCCEEEEEeCCCEEEEEECcCCccceEEEcCCc-ceeeeeeeeeCCEEEEEEc-cCCeEEEEeCCCCcEeEEEeccCccc
Q 003792 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVLGIN-DVVDGIDIALGKYVITLSS-DGSTLRAWNLPDGQMVWESFLRGSKH 129 (795)
Q Consensus 52 ~~~~v~vat~~g~l~ALn~~tG~ivWR~~l~~~-~~i~~l~~~~g~~~V~Vs~-~g~~v~A~d~~tG~llWe~~~~~~~~ 129 (795)
..+-+.+++++..-+-.+..+|+ |-..+... +++........ +.+..+| -.+.|+.|...+|...|...-..
T Consensus 75 ~~~l~aTGGgDD~AflW~~~~ge--~~~eltgHKDSVt~~~Fshd-gtlLATGdmsG~v~v~~~stg~~~~~~~~e~--- 148 (399)
T KOG0296|consen 75 NNNLVATGGGDDLAFLWDISTGE--FAGELTGHKDSVTCCSFSHD-GTLLATGDMSGKVLVFKVSTGGEQWKLDQEV--- 148 (399)
T ss_pred CCceEEecCCCceEEEEEccCCc--ceeEecCCCCceEEEEEccC-ceEEEecCCCccEEEEEcccCceEEEeeccc---
Confidence 35557777888888888888888 66656443 44544322333 3444444 47899999999999999987221
Q ss_pred cCCceeccccccccCCCeEEE-E-eCCEEEEEECCCCcEEEEEeccCcceeeeeEEEEecCCEEEEEEecCCceeEEEEE
Q 003792 130 SKPLLLVPTNLKVDKDSLILV-S-SKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQI 207 (795)
Q Consensus 130 s~~~~~~~~~~~~~~~~~V~V-~-~~g~l~ald~~tG~~~W~~~~~~~~~~~~~vv~s~~~~~Vyvv~~~g~~~~~v~al 207 (795)
.++..+- ......++. . .+|.+......++...=.+.-.....+-..++ ..+.+++. ++..+ .+...
T Consensus 149 -~dieWl~----WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~--pdGKr~~t-gy~dg---ti~~W 217 (399)
T KOG0296|consen 149 -EDIEWLK----WHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFI--PDGKRILT-GYDDG---TIIVW 217 (399)
T ss_pred -CceEEEE----ecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCccccccc--CCCceEEE-EecCc---eEEEE
Confidence 2333432 121222332 2 24444333333321111111111000011111 23444554 44433 79999
Q ss_pred EcCCCceeeeee
Q 003792 208 NAMNGELLNHET 219 (795)
Q Consensus 208 d~~tG~~~w~~~ 219 (795)
|++||+++-...
T Consensus 218 n~ktg~p~~~~~ 229 (399)
T KOG0296|consen 218 NPKTGQPLHKIT 229 (399)
T ss_pred ecCCCceeEEec
Confidence 999999986654
No 51
>PTZ00421 coronin; Provisional
Probab=95.01 E-value=2.7 Score=49.14 Aligned_cols=155 Identities=14% Similarity=0.146 Sum_probs=84.1
Q ss_pred CCEEEEEeCCCEEEEEECcCCccceEEEcCCcceeeeeeeeeCCEEEEEEccCCeEEEEeCCCCcEeEEEeccCccccCC
Q 003792 53 RKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKP 132 (795)
Q Consensus 53 ~~~v~vat~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~~~~~~~s~~ 132 (795)
.+.++.++.++.|.-.|.++|+.+=.... ....+..+.....+..++.++.++.++.||+.+|+.+.+...........
T Consensus 138 ~~iLaSgs~DgtVrIWDl~tg~~~~~l~~-h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~ 216 (493)
T PTZ00421 138 MNVLASAGADMVVNVWDVERGKAVEVIKC-HSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQR 216 (493)
T ss_pred CCEEEEEeCCCEEEEEECCCCeEEEEEcC-CCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceE
Confidence 35688889999999999999976433221 12234433222234455546667899999999999988776543321001
Q ss_pred ceeccccccccCCCeEEEEe-----CCEEEEEECCCCcEEEE-EeccCcceeeeeEEEEecCCEEEEEEe-cCCceeEEE
Q 003792 133 LLLVPTNLKVDKDSLILVSS-----KGCLHAVSSIDGEILWT-RDFAAESVEVQQVIQLDESDQIYVVGY-AGSSQFHAY 205 (795)
Q Consensus 133 ~~~~~~~~~~~~~~~V~V~~-----~g~l~ald~~tG~~~W~-~~~~~~~~~~~~vv~s~~~~~Vyvv~~-~g~~~~~v~ 205 (795)
....+ . .+.++..+ ++.+...|..+...... ........ ...+.....++.+|+.+. +| .+.
T Consensus 217 ~~w~~-----~-~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~-~~~~~~d~d~~~L~lggkgDg----~Ir 285 (493)
T PTZ00421 217 CLWAK-----R-KDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSA-LFIPFFDEDTNLLYIGSKGEG----NIR 285 (493)
T ss_pred EEEcC-----C-CCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCc-eEEEEEcCCCCEEEEEEeCCC----eEE
Confidence 11111 1 23333321 56777777766542222 22111111 111111234455665543 33 677
Q ss_pred EEEcCCCceeeeee
Q 003792 206 QINAMNGELLNHET 219 (795)
Q Consensus 206 ald~~tG~~~w~~~ 219 (795)
.+|..+|+++....
T Consensus 286 iwdl~~~~~~~~~~ 299 (493)
T PTZ00421 286 CFELMNERLTFCSS 299 (493)
T ss_pred EEEeeCCceEEEee
Confidence 78888888775543
No 52
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=94.83 E-value=1.6 Score=45.48 Aligned_cols=106 Identities=14% Similarity=0.187 Sum_probs=77.5
Q ss_pred CCEEEEEeCCCEEEEEECcCCccceEEEcCCcceeeeeeeeeCCEEEEEEccCCeEEEEeCCCCcEeEEEeccCccccCC
Q 003792 53 RKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKP 132 (795)
Q Consensus 53 ~~~v~vat~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~~~~~~~s~~ 132 (795)
++.++-+++++.|---|-+||.++=+..++.+ +.++.+...++++++ .+|+.|.-||+.+=.++=++.+.-... +
T Consensus 155 D~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~--VtSlEvs~dG~ilTi-a~gssV~Fwdaksf~~lKs~k~P~nV~--S 229 (334)
T KOG0278|consen 155 DKCILSSADDKTVRLWDHRTGTEVQSLEFNSP--VTSLEVSQDGRILTI-AYGSSVKFWDAKSFGLLKSYKMPCNVE--S 229 (334)
T ss_pred CceEEeeccCCceEEEEeccCcEEEEEecCCC--CcceeeccCCCEEEE-ecCceeEEeccccccceeeccCccccc--c
Confidence 45566667888888889999999888887766 455544556666664 457789999999999998888765432 2
Q ss_pred ceeccccccccCCCeEEEE--eCCEEEEEECCCCcEEEEE
Q 003792 133 LLLVPTNLKVDKDSLILVS--SKGCLHAVSSIDGEILWTR 170 (795)
Q Consensus 133 ~~~~~~~~~~~~~~~V~V~--~~g~l~ald~~tG~~~W~~ 170 (795)
+.+-| .+.+||. .+..++.+|-.||+.+=.+
T Consensus 230 ASL~P-------~k~~fVaGged~~~~kfDy~TgeEi~~~ 262 (334)
T KOG0278|consen 230 ASLHP-------KKEFFVAGGEDFKVYKFDYNTGEEIGSY 262 (334)
T ss_pred ccccC-------CCceEEecCcceEEEEEeccCCceeeec
Confidence 23333 4567775 3889999999999877665
No 53
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=94.66 E-value=3.3 Score=53.05 Aligned_cols=200 Identities=11% Similarity=0.108 Sum_probs=103.2
Q ss_pred CCEEEEEeCC-CEEEEEECcCCccceEEE-------cCCc--c------eeeeeeeeeCCEEEEEEc-cCCeEEEEeCCC
Q 003792 53 RKRVVVSTEE-NVIASLDLRHGEIFWRHV-------LGIN--D------VVDGIDIALGKYVITLSS-DGSTLRAWNLPD 115 (795)
Q Consensus 53 ~~~v~vat~~-g~l~ALn~~tG~ivWR~~-------l~~~--~------~i~~l~~~~g~~~V~Vs~-~g~~v~A~d~~t 115 (795)
++.|||++.. +.|.-+|..+|.+.=-.- .... + ...++.+...++.+||+. .+++|+-||..+
T Consensus 635 gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~ 714 (1057)
T PLN02919 635 KNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISD 714 (1057)
T ss_pred CCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCC
Confidence 4568888764 567888887765310000 0000 0 001221222245666653 457899999999
Q ss_pred CcEeEEEeccCcc------ccCCc-eeccccccccCC-CeEEEE--eCCEEEEEECCCCcEEEEEecc-----------C
Q 003792 116 GQMVWESFLRGSK------HSKPL-LLVPTNLKVDKD-SLILVS--SKGCLHAVSSIDGEILWTRDFA-----------A 174 (795)
Q Consensus 116 G~llWe~~~~~~~------~s~~~-~~~~~~~~~~~~-~~V~V~--~~g~l~ald~~tG~~~W~~~~~-----------~ 174 (795)
|...- +...+.. ..... ...|.....+.+ +.++|. .+++|+.+|..+|...|..... .
T Consensus 715 g~v~~-~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~ 793 (1057)
T PLN02919 715 GVTRV-FSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGD 793 (1057)
T ss_pred CeEEE-EecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccC
Confidence 87531 1111000 00000 001111122323 347776 3789999999998876543110 0
Q ss_pred --c-----c-eeeeeEEEEecCCEEEEEEecCCceeEEEEEEcCCCceeeeeeeec---------cCCccc--ceEEecC
Q 003792 175 --E-----S-VEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAF---------SGGFVG--DVALVSS 235 (795)
Q Consensus 175 --~-----~-~~~~~vv~s~~~~~Vyvv~~~g~~~~~v~ald~~tG~~~w~~~v~~---------~~~~~~--~~~~vg~ 235 (795)
+ . ..|..+. ...++.+||....++ ++..+|+.+|....-..... ...+.. .+.+-.+
T Consensus 794 ~dG~g~~~~l~~P~Gva-vd~dG~LYVADs~N~---rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~d 869 (1057)
T PLN02919 794 HDGVGSEVLLQHPLGVL-CAKDGQIYVADSYNH---KIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGEN 869 (1057)
T ss_pred CCCchhhhhccCCceee-EeCCCcEEEEECCCC---EEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCC
Confidence 0 0 0133332 234567888665444 78889998887764332111 111111 1222234
Q ss_pred cEEEEEECCCCeEEEEEeecCe
Q 003792 236 DTLVTLDTTRSILVTVSFKNRK 257 (795)
Q Consensus 236 ~~lv~~d~~~~~L~v~~l~sg~ 257 (795)
+.++.+|..++.++++++.++.
T Consensus 870 G~lyVaDt~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 870 GRLFVADTNNSLIRYLDLNKGE 891 (1057)
T ss_pred CCEEEEECCCCEEEEEECCCCc
Confidence 4566788888889999998876
No 54
>PLN00181 protein SPA1-RELATED; Provisional
Probab=94.63 E-value=16 Score=45.46 Aligned_cols=189 Identities=19% Similarity=0.104 Sum_probs=96.8
Q ss_pred CCCEEEEEeCCCEEEEEECcCCccceE---E---EcCCcceeeeeeee-eCCEEEEEEccCCeEEEEeCCCCcEeEEEec
Q 003792 52 GRKRVVVSTEENVIASLDLRHGEIFWR---H---VLGINDVVDGIDIA-LGKYVITLSSDGSTLRAWNLPDGQMVWESFL 124 (795)
Q Consensus 52 ~~~~v~vat~~g~l~ALn~~tG~ivWR---~---~l~~~~~i~~l~~~-~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~~ 124 (795)
+++.+++++.++.|.-.|..+...-++ . .+.....+..+... ..+..++.++.++.|+.||..+|+.+.+...
T Consensus 494 dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~ 573 (793)
T PLN00181 494 DGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKE 573 (793)
T ss_pred CCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecC
Confidence 356688888899988888654211111 0 01111112222111 1233455466678999999999999988765
Q ss_pred cCccccCCceeccccccccCCCeEEE-E-eCCEEEEEECCCCcEEEEEeccCcceeeeeEEEEecCCEEEEEEecCCcee
Q 003792 125 RGSKHSKPLLLVPTNLKVDKDSLILV-S-SKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQF 202 (795)
Q Consensus 125 ~~~~~s~~~~~~~~~~~~~~~~~V~V-~-~~g~l~ald~~tG~~~W~~~~~~~~~~~~~vv~s~~~~~Vyvv~~~g~~~~ 202 (795)
....+ ..+.+.+ . ++.+++ . .+|.+...|..+|...-....... ...+.....++..++.+...+
T Consensus 574 H~~~V-~~l~~~p-----~-~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~---v~~v~~~~~~g~~latgs~dg--- 640 (793)
T PLN00181 574 HEKRV-WSIDYSS-----A-DPTLLASGSDDGSVKLWSINQGVSIGTIKTKAN---ICCVQFPSESGRSLAFGSADH--- 640 (793)
T ss_pred CCCCE-EEEEEcC-----C-CCCEEEEEcCCCEEEEEECCCCcEEEEEecCCC---eEEEEEeCCCCCEEEEEeCCC---
Confidence 54332 1111111 1 334444 3 389999999999887655443221 111111123344444444333
Q ss_pred EEEEEEcCCCceeeeeeeeccCCcccceEEecCcEEEEEECCCCeEEEEEeec
Q 003792 203 HAYQINAMNGELLNHETAAFSGGFVGDVALVSSDTLVTLDTTRSILVTVSFKN 255 (795)
Q Consensus 203 ~v~ald~~tG~~~w~~~v~~~~~~~~~~~~vg~~~lv~~d~~~~~L~v~~l~s 255 (795)
.+..+|..+++........-...+. .+.+..+..++... ..+.+.+-|+..
T Consensus 641 ~I~iwD~~~~~~~~~~~~~h~~~V~-~v~f~~~~~lvs~s-~D~~ikiWd~~~ 691 (793)
T PLN00181 641 KVYYYDLRNPKLPLCTMIGHSKTVS-YVRFVDSSTLVSSS-TDNTLKLWDLSM 691 (793)
T ss_pred eEEEEECCCCCccceEecCCCCCEE-EEEEeCCCEEEEEE-CCCEEEEEeCCC
Confidence 7888898877532111111111121 12223444555554 356787777764
No 55
>PHA02713 hypothetical protein; Provisional
Probab=94.63 E-value=2.3 Score=50.52 Aligned_cols=172 Identities=9% Similarity=0.118 Sum_probs=94.3
Q ss_pred CCEEEEEeCC-------CEEEEEECcCCccceEEEcCCcceee--eeeeeeCCEEEEEEccC-----CeEEEEeCCCCcE
Q 003792 53 RKRVVVSTEE-------NVIASLDLRHGEIFWRHVLGINDVVD--GIDIALGKYVITLSSDG-----STLRAWNLPDGQM 118 (795)
Q Consensus 53 ~~~v~vat~~-------g~l~ALn~~tG~ivWR~~l~~~~~i~--~l~~~~g~~~V~Vs~~g-----~~v~A~d~~tG~l 118 (795)
++.||+.... +.+..+|+++.. |+..-+-+..-. +. +..++.++++||.+ ..+..||+.+.
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~--W~~~~~m~~~R~~~~~-~~~~g~IYviGG~~~~~~~~sve~Ydp~~~-- 377 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKI--HVELPPMIKNRCRFSL-AVIDDTIYAIGGQNGTNVERTIECYTMGDD-- 377 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCe--EeeCCCCcchhhceeE-EEECCEEEEECCcCCCCCCceEEEEECCCC--
Confidence 6788887652 358889998874 976543331111 22 34566666667642 24888999876
Q ss_pred eEEEeccCccccCCceeccccccccCCCeEEEEeC-------------------------CEEEEEECCCCcEEEEEecc
Q 003792 119 VWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSSK-------------------------GCLHAVSSIDGEILWTRDFA 173 (795)
Q Consensus 119 lWe~~~~~~~~s~~~~~~~~~~~~~~~~~V~V~~~-------------------------g~l~ald~~tG~~~W~~~~~ 173 (795)
.|+.-..-+........ ..-++.++|.++ ..+.++|+.+. .|+.-.+
T Consensus 378 ~W~~~~~mp~~r~~~~~------~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td--~W~~v~~ 449 (557)
T PHA02713 378 KWKMLPDMPIALSSYGM------CVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNN--IWETLPN 449 (557)
T ss_pred eEEECCCCCcccccccE------EEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCC--eEeecCC
Confidence 58863321111001111 112567777531 24778888775 5886544
Q ss_pred Ccce-eeeeEEEEecCCEEEEEEecCC-c--eeEEEEEEcCC-CceeeeeeeeccCCccc-ceEEecCcEEEEE
Q 003792 174 AESV-EVQQVIQLDESDQIYVVGYAGS-S--QFHAYQINAMN-GELLNHETAAFSGGFVG-DVALVSSDTLVTL 241 (795)
Q Consensus 174 ~~~~-~~~~vv~s~~~~~Vyvv~~~g~-~--~~~v~ald~~t-G~~~w~~~v~~~~~~~~-~~~~vg~~~lv~~ 241 (795)
.+.. ....+ +.-++.+|++|...+ . .-.+.++|+.+ . .|+.--..|..... ....+++.+++..
T Consensus 450 m~~~r~~~~~--~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~--~W~~~~~m~~~r~~~~~~~~~~~iyv~G 519 (557)
T PHA02713 450 FWTGTIRPGV--VSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYN--GWELITTTESRLSALHTILHDNTIMMLH 519 (557)
T ss_pred CCcccccCcE--EEECCEEEEEeCCCCCCccceeEEEecCCCCC--CeeEccccCcccccceeEEECCEEEEEe
Confidence 3221 01112 246889999875321 1 12467899987 4 48765445544433 2333355555443
No 56
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=94.44 E-value=3.3 Score=48.53 Aligned_cols=153 Identities=14% Similarity=0.175 Sum_probs=90.7
Q ss_pred CCCEEEEEeCCCEEEEEECcCCccceEEEcCCc-ceeeeeeeeeCCEE-EEEEccCCeEEEEeCCCCcEeEEEeccCccc
Q 003792 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVLGIN-DVVDGIDIALGKYV-ITLSSDGSTLRAWNLPDGQMVWESFLRGSKH 129 (795)
Q Consensus 52 ~~~~v~vat~~g~l~ALn~~tG~ivWR~~l~~~-~~i~~l~~~~g~~~-V~Vs~~g~~v~A~d~~tG~llWe~~~~~~~~ 129 (795)
..+.+-++.++|+++-++-..|++.-...|... +.+-.+. -...+. ++.|+.|+.+|+||+..|..+=.....-..+
T Consensus 121 ~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLsls-w~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l 199 (691)
T KOG2048|consen 121 ENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLS-WNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRL 199 (691)
T ss_pred ccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEE-ecCCccEEEecccCceEEEEEcCCCceEEEeeeccccc
Confidence 356788999999999999999999999999766 2222221 233344 4545567899999999999887333222112
Q ss_pred cCCceeccccccccCCCeEEEEeCCEEEEEECCCCcE-EEEEeccCcc-------eeeeeEEEEecCCEEEEEEecCCce
Q 003792 130 SKPLLLVPTNLKVDKDSLILVSSKGCLHAVSSIDGEI-LWTRDFAAES-------VEVQQVIQLDESDQIYVVGYAGSSQ 201 (795)
Q Consensus 130 s~~~~~~~~~~~~~~~~~V~V~~~g~l~ald~~tG~~-~W~~~~~~~~-------~~~~~vv~s~~~~~Vyvv~~~g~~~ 201 (795)
+..-+... =.|..+.++.+.+-| .+|.+ -|-.....-. .....+.-....+.||..|.++
T Consensus 200 ~k~~~~iV--------WSv~~Lrd~tI~sgD-S~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~--- 267 (691)
T KOG2048|consen 200 SKREPTIV--------WSVLFLRDSTIASGD-SAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDP--- 267 (691)
T ss_pred ccCCceEE--------EEEEEeecCcEEEec-CCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCC---
Confidence 11001110 112333566676666 44554 3654332110 0011122123457899888887
Q ss_pred eEEEEEEcCCCceeeee
Q 003792 202 FHAYQINAMNGELLNHE 218 (795)
Q Consensus 202 ~~v~ald~~tG~~~w~~ 218 (795)
++.-+...++..-|..
T Consensus 268 -~ii~~~~~~~~~~wv~ 283 (691)
T KOG2048|consen 268 -KIIQYSLTTNKSEWVI 283 (691)
T ss_pred -ceEEEEecCCccceee
Confidence 7888887777665655
No 57
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=94.42 E-value=14 Score=43.90 Aligned_cols=195 Identities=14% Similarity=0.225 Sum_probs=109.6
Q ss_pred cCCCEEEEEeCCCEEEEEECcCCccc--eEEEcCCcceeeeeeeeeCCEEEEEEccCCeEEEEeCCCCcEeEEEeccCcc
Q 003792 51 TGRKRVVVSTEENVIASLDLRHGEIF--WRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSK 128 (795)
Q Consensus 51 ~~~~~v~vat~~g~l~ALn~~tG~iv--WR~~l~~~~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~~~~~~ 128 (795)
+++..+|++.....+.-....+|+.+ |+..-+.+ +..+.....+..+..+|-++.++.||...|...=.+...++.
T Consensus 72 ~d~~~L~~a~rs~llrv~~L~tgk~irswKa~He~P--vi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGv 149 (775)
T KOG0319|consen 72 PDEEVLVTASRSQLLRVWSLPTGKLIRSWKAIHEAP--VITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGV 149 (775)
T ss_pred CCccEEEEeeccceEEEEEcccchHhHhHhhccCCC--eEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCce
Confidence 34677999999998888888999764 55444444 333322334456665666789999999999988888876655
Q ss_pred ccCCceeccccccccCCCeEEEE-eCCEEEEEECCCCcE----------------------------------EEEEecc
Q 003792 129 HSKPLLLVPTNLKVDKDSLILVS-SKGCLHAVSSIDGEI----------------------------------LWTRDFA 173 (795)
Q Consensus 129 ~s~~~~~~~~~~~~~~~~~V~V~-~~g~l~ald~~tG~~----------------------------------~W~~~~~ 173 (795)
. ..+.+-+ ... ...++.. .++.+++.|..++.. +|.+..-
T Consensus 150 V-ssl~F~~---~~~-~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~ 224 (775)
T KOG0319|consen 150 V-SSLLFHP---HWN-RWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQY 224 (775)
T ss_pred E-EEEEeCC---ccc-hhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhh
Confidence 4 1222222 111 1112222 367777777765554 2433111
Q ss_pred Ccc--e----eeeeEEEEec-----CCEEEEEEecCCceeEEEEEEcCCCceeeeeeeeccCCcccceEEecCcEEEEEE
Q 003792 174 AES--V----EVQQVIQLDE-----SDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAFSGGFVGDVALVSSDTLVTLD 242 (795)
Q Consensus 174 ~~~--~----~~~~vv~s~~-----~~~Vyvv~~~g~~~~~v~ald~~tG~~~w~~~v~~~~~~~~~~~~vg~~~lv~~d 242 (795)
... . ..+.++.... +..++.+|-.| .+--.|.++|+.+...+.+....++....+.+.+.++++.
T Consensus 225 ~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g----~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vt 300 (775)
T KOG0319|consen 225 KKLKTLPLYESLESVVRLREELGGKGEYIITAGGSG----VVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVT 300 (775)
T ss_pred hhhheechhhheeeEEEechhcCCcceEEEEecCCc----eEEEEecccchhhhhhccCCchhhhcceeccccCceEEEE
Confidence 100 0 0112221111 22344444343 6778899999988766544222244433444555556665
Q ss_pred CCCCeEEEEEeecCe
Q 003792 243 TTRSILVTVSFKNRK 257 (795)
Q Consensus 243 ~~~~~L~v~~l~sg~ 257 (795)
++ -++...|..+.+
T Consensus 301 ae-Qnl~l~d~~~l~ 314 (775)
T KOG0319|consen 301 AE-QNLFLYDEDELT 314 (775)
T ss_pred cc-ceEEEEEccccE
Confidence 43 567777777766
No 58
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=94.30 E-value=16 Score=43.82 Aligned_cols=97 Identities=14% Similarity=0.123 Sum_probs=61.4
Q ss_pred CCEEEEEECCCCcEE-EEEec---------cCcceeeeeEEEEecCCEEEEEEecCCceeEEEEEEcCCCceeeeeeeec
Q 003792 153 KGCLHAVSSIDGEIL-WTRDF---------AAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAF 222 (795)
Q Consensus 153 ~g~l~ald~~tG~~~-W~~~~---------~~~~~~~~~vv~s~~~~~Vyvv~~~g~~~~~v~ald~~tG~~~w~~~v~~ 222 (795)
||.+.|--+.+|+++ |.... +.......+. ...+..++-.+++| .|.|.|...++-..+. .+
T Consensus 361 Dgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f--~~~g~~llssSLDG----tVRAwDlkRYrNfRTf--t~ 432 (893)
T KOG0291|consen 361 DGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQF--TARGNVLLSSSLDG----TVRAWDLKRYRNFRTF--TS 432 (893)
T ss_pred CCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEE--EecCCEEEEeecCC----eEEeeeecccceeeee--cC
Confidence 666666666777654 64432 2222222223 34677777778888 7999999988877666 45
Q ss_pred cCCcccceEEec-CcEEEEEEC-CCCeEEEEEeecCe
Q 003792 223 SGGFVGDVALVS-SDTLVTLDT-TRSILVTVSFKNRK 257 (795)
Q Consensus 223 ~~~~~~~~~~vg-~~~lv~~d~-~~~~L~v~~l~sg~ 257 (795)
|...+-+|+-|+ .+.+||+-. +.=.+++-++++|+
T Consensus 433 P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGq 469 (893)
T KOG0291|consen 433 PEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQ 469 (893)
T ss_pred CCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCe
Confidence 555666787774 355666632 22257888888888
No 59
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=93.79 E-value=1.3 Score=51.46 Aligned_cols=147 Identities=19% Similarity=0.296 Sum_probs=76.1
Q ss_pred ceeeccccceeEEEeccCceeeeeeeeeccCCCEEEEEeCCCEEEEEECcCCccceEEEcCCcc-eee--eeeeeeCCEE
Q 003792 22 SLYEDQVGLMDWHQQYIGKVKHAVFHTQKTGRKRVVVSTEENVIASLDLRHGEIFWRHVLGIND-VVD--GIDIALGKYV 98 (795)
Q Consensus 22 Al~edq~G~~dW~~~~vG~~~~~~f~~~~~~~~~v~vat~~g~l~ALn~~tG~ivWR~~l~~~~-~i~--~l~~~~g~~~ 98 (795)
+..=|..|.+.|.....+..... |.. ..++.+++++. +.++.+|. .|+++|...++... .+. ......| ++
T Consensus 130 ~~~iD~~G~Vrw~~~~~~~~~~~-~~~--l~nG~ll~~~~-~~~~e~D~-~G~v~~~~~l~~~~~~~HHD~~~l~nG-n~ 203 (477)
T PF05935_consen 130 TYLIDNNGDVRWYLPLDSGSDNS-FKQ--LPNGNLLIGSG-NRLYEIDL-LGKVIWEYDLPGGYYDFHHDIDELPNG-NL 203 (477)
T ss_dssp EEEEETTS-EEEEE-GGGT--SS-EEE---TTS-EEEEEB-TEEEEE-T-T--EEEEEE--TTEE-B-S-EEE-TTS--E
T ss_pred EEEECCCccEEEEEccCccccce-eeE--cCCCCEEEecC-CceEEEcC-CCCEEEeeecCCcccccccccEECCCC-CE
Confidence 44558899999999875544322 332 13667777776 99999998 79999999998752 011 1111122 33
Q ss_pred EEEEc-------------cCCeEEEEeCCCCcEeEEEeccCcccc-CC----------ceecc-------cc-ccccC-C
Q 003792 99 ITLSS-------------DGSTLRAWNLPDGQMVWESFLRGSKHS-KP----------LLLVP-------TN-LKVDK-D 145 (795)
Q Consensus 99 V~Vs~-------------~g~~v~A~d~~tG~llWe~~~~~~~~s-~~----------~~~~~-------~~-~~~~~-~ 145 (795)
++++. .+..|.-+| .+|+++|++.+..--.. .. ..... .+ ...+. +
T Consensus 204 L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~d 282 (477)
T PF05935_consen 204 LILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSD 282 (477)
T ss_dssp EEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTT
T ss_pred EEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCC
Confidence 33332 135799999 99999999987642100 00 00000 00 01112 4
Q ss_pred CeEEEEe--CCEEEEEECCCCcEEEEEeccCc
Q 003792 146 SLILVSS--KGCLHAVSSIDGEILWTRDFAAE 175 (795)
Q Consensus 146 ~~V~V~~--~g~l~ald~~tG~~~W~~~~~~~ 175 (795)
+.+++.+ ...|..+|..+|+++|....+..
T Consensus 283 d~iivSsR~~s~V~~Id~~t~~i~Wilg~~~~ 314 (477)
T PF05935_consen 283 DSIIVSSRHQSAVIKIDYRTGKIKWILGPPGG 314 (477)
T ss_dssp TEEEEEETTT-EEEEEE-TTS-EEEEES-STT
T ss_pred CeEEEEcCcceEEEEEECCCCcEEEEeCCCCC
Confidence 5566654 56999999999999999876543
No 60
>PHA03098 kelch-like protein; Provisional
Probab=93.62 E-value=4.7 Score=47.47 Aligned_cols=189 Identities=12% Similarity=0.107 Sum_probs=95.8
Q ss_pred CCEEEEEeCC-------CEEEEEECcCCccceEEEcCCcceee--eeeeeeCCEEEEEEccC-----CeEEEEeCCCCcE
Q 003792 53 RKRVVVSTEE-------NVIASLDLRHGEIFWRHVLGINDVVD--GIDIALGKYVITLSSDG-----STLRAWNLPDGQM 118 (795)
Q Consensus 53 ~~~v~vat~~-------g~l~ALn~~tG~ivWR~~l~~~~~i~--~l~~~~g~~~V~Vs~~g-----~~v~A~d~~tG~l 118 (795)
++.||+.... +.+..+|+.+++ |+..-+-+..-. +. +..++.++++||.+ ..+..||+.++
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~--W~~~~~~~~~R~~~~~-~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~-- 368 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKS--WNKVPELIYPRKNPGV-TVFNNRIYVIGGIYNSISLNTVESWKPGES-- 368 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCe--eeECCCCCcccccceE-EEECCEEEEEeCCCCCEecceEEEEcCCCC--
Confidence 5677776542 358899998874 865433221111 22 24566666667643 35778888876
Q ss_pred eEEEeccCccccCCceeccccccccCCCeEEEEeC--------CEEEEEECCCCcEEEEEeccCcceeeeeEEEEecCCE
Q 003792 119 VWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSSK--------GCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQ 190 (795)
Q Consensus 119 lWe~~~~~~~~s~~~~~~~~~~~~~~~~~V~V~~~--------g~l~ald~~tG~~~W~~~~~~~~~~~~~vv~s~~~~~ 190 (795)
.|+....-+........ .. .++.+++.++ ..+..+|..++ .|+.-.+.+.. .........++.
T Consensus 369 ~W~~~~~lp~~r~~~~~-----~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~--~W~~~~~~p~~-r~~~~~~~~~~~ 439 (534)
T PHA03098 369 KWREEPPLIFPRYNPCV-----VN-VNNLIYVIGGISKNDELLKTVECFSLNTN--KWSKGSPLPIS-HYGGCAIYHDGK 439 (534)
T ss_pred ceeeCCCcCcCCccceE-----EE-ECCEEEEECCcCCCCcccceEEEEeCCCC--eeeecCCCCcc-ccCceEEEECCE
Confidence 48754321111011111 11 2567777532 46888888775 58764433221 011111245788
Q ss_pred EEEEEecCCc-----eeEEEEEEcCCCceeeeeeeeccCCccc-ceEEecCcEEEEEECC----CCeEEEEEeecCe
Q 003792 191 IYVVGYAGSS-----QFHAYQINAMNGELLNHETAAFSGGFVG-DVALVSSDTLVTLDTT----RSILVTVSFKNRK 257 (795)
Q Consensus 191 Vyvv~~~g~~-----~~~v~ald~~tG~~~w~~~v~~~~~~~~-~~~~vg~~~lv~~d~~----~~~L~v~~l~sg~ 257 (795)
+|++|..... --.+..+|+.+++ |+..-..+....+ .....++.++++.-.. ...+.+.|..+++
T Consensus 440 iyv~GG~~~~~~~~~~~~v~~yd~~~~~--W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 440 IYVIGGISYIDNIKVYNIVESYNPVTNK--WTELSSLNFPRINASLCIFNNKIYVVGGDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred EEEECCccCCCCCcccceEEEecCCCCc--eeeCCCCCcccccceEEEECCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence 9988743211 1237889988764 6553222222222 2222344444433111 2356667766655
No 61
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=93.59 E-value=3.6 Score=43.72 Aligned_cols=193 Identities=13% Similarity=0.091 Sum_probs=106.7
Q ss_pred CC-EEEEEeCCCEEEEEECcCCccceEEEcCCcceeeeeee-eeCCEEEEEEccCCeEEEEeCCCCc-EeEEEeccCccc
Q 003792 53 RK-RVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDI-ALGKYVITLSSDGSTLRAWNLPDGQ-MVWESFLRGSKH 129 (795)
Q Consensus 53 ~~-~v~vat~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~-~~g~~~V~Vs~~g~~v~A~d~~tG~-llWe~~~~~~~~ 129 (795)
++ .=|.+...+.+.-||++||++. ++.|+++....+..+ ..+.-+++ ..+.-++-+|.+++. ..|.....-...
T Consensus 72 dG~VWft~qg~gaiGhLdP~tGev~-~ypLg~Ga~Phgiv~gpdg~~Wit--d~~~aI~R~dpkt~evt~f~lp~~~a~~ 148 (353)
T COG4257 72 DGAVWFTAQGTGAIGHLDPATGEVE-TYPLGSGASPHGIVVGPDGSAWIT--DTGLAIGRLDPKTLEVTRFPLPLEHADA 148 (353)
T ss_pred CCceEEecCccccceecCCCCCceE-EEecCCCCCCceEEECCCCCeeEe--cCcceeEEecCcccceEEeecccccCCC
Confidence 44 4566777899999999999864 666765532222211 12333444 323368888997776 566655432211
Q ss_pred cCCceeccccccccCCCeEEEE-eCCEEEEEECCCCcE-EEEEeccCcceeeeeEEEEecCCEEEEEEecCCceeEEEEE
Q 003792 130 SKPLLLVPTNLKVDKDSLILVS-SKGCLHAVSSIDGEI-LWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQI 207 (795)
Q Consensus 130 s~~~~~~~~~~~~~~~~~V~V~-~~g~l~ald~~tG~~-~W~~~~~~~~~~~~~vv~s~~~~~Vyvv~~~g~~~~~v~al 207 (795)
.+... ..|..+.+... ..|--=+||..++.+ +|... .+.- ++.+. +..++.||+.++.|+ .+.-+
T Consensus 149 --nlet~----vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaP--qG~g-pyGi~-atpdGsvwyaslagn---aiari 215 (353)
T COG4257 149 --NLETA----VFDPWGNLWFTGQIGAYGRLDPARNVISVFPAP--QGGG-PYGIC-ATPDGSVWYASLAGN---AIARI 215 (353)
T ss_pred --cccce----eeCCCccEEEeeccccceecCcccCceeeeccC--CCCC-CcceE-ECCCCcEEEEecccc---ceEEc
Confidence 11111 23444555443 455555889888764 35443 3222 44443 467889999999987 68889
Q ss_pred EcCCCceeeeeeeeccCCccc-c-eEEe-cCcEEEEEECCCCeEEEEEeecCeeeeEEEeec
Q 003792 208 NAMNGELLNHETAAFSGGFVG-D-VALV-SSDTLVTLDTTRSILVTVSFKNRKIAFQETHLS 266 (795)
Q Consensus 208 d~~tG~~~w~~~v~~~~~~~~-~-~~~v-g~~~lv~~d~~~~~L~v~~l~sg~~~~~~~~l~ 266 (795)
|+.+|.. ..+..|..+.. + .+-+ ..+.+-..+-.+++++..+-.+.+ ..+-+|-
T Consensus 216 dp~~~~a---ev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~s--W~eypLP 272 (353)
T COG4257 216 DPFAGHA---EVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTS--WIEYPLP 272 (353)
T ss_pred ccccCCc---ceecCCCcccccccccccCccCcEEEeccCCceeeEeCccccc--ceeeeCC
Confidence 9999932 22333433222 1 1111 112232334455667777655544 5666653
No 62
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=93.48 E-value=3.7 Score=46.45 Aligned_cols=151 Identities=17% Similarity=0.191 Sum_probs=84.2
Q ss_pred CCCEEEE-EeCCCEEEEEECcCCccceEEEcCCc-ceeeeeeeeeCCEEEEE-EccCCeEEEEeCCCCcEeEEEeccCcc
Q 003792 52 GRKRVVV-STEENVIASLDLRHGEIFWRHVLGIN-DVVDGIDIALGKYVITL-SSDGSTLRAWNLPDGQMVWESFLRGSK 128 (795)
Q Consensus 52 ~~~~v~v-at~~g~l~ALn~~tG~ivWR~~l~~~-~~i~~l~~~~g~~~V~V-s~~g~~v~A~d~~tG~llWe~~~~~~~ 128 (795)
.++.+++ ++++.++---|+.++.+ ...+... +.+.......+++.+++ |+.++.||.||+.+-. -|...+.-+.
T Consensus 121 ~d~t~l~s~sDd~v~k~~d~s~a~v--~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~-~~v~elnhg~ 197 (487)
T KOG0310|consen 121 QDNTMLVSGSDDKVVKYWDLSTAYV--QAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLT-SRVVELNHGC 197 (487)
T ss_pred cCCeEEEecCCCceEEEEEcCCcEE--EEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCC-ceeEEecCCC
Confidence 3555554 66667777777776663 4455433 33333223344454444 5678999999998765 5666554221
Q ss_pred ccCCceeccccccccCCCeEEEE-eCCEEEEEECCCCcEEEEEec-cCcceeeeeEEEEecCCEEEEEEecCCceeEEEE
Q 003792 129 HSKPLLLVPTNLKVDKDSLILVS-SKGCLHAVSSIDGEILWTRDF-AAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQ 206 (795)
Q Consensus 129 ~s~~~~~~~~~~~~~~~~~V~V~-~~g~l~ald~~tG~~~W~~~~-~~~~~~~~~vv~s~~~~~Vyvv~~~g~~~~~v~a 206 (795)
-......+| .+..++. ++..+...|..+|.++=.... -... ...+.....+..++..++++ +|-+
T Consensus 198 pVe~vl~lp-------sgs~iasAgGn~vkVWDl~~G~qll~~~~~H~Kt--VTcL~l~s~~~rLlS~sLD~----~VKV 264 (487)
T KOG0310|consen 198 PVESVLALP-------SGSLIASAGGNSVKVWDLTTGGQLLTSMFNHNKT--VTCLRLASDSTRLLSGSLDR----HVKV 264 (487)
T ss_pred ceeeEEEcC-------CCCEEEEcCCCeEEEEEecCCceehhhhhcccce--EEEEEeecCCceEeeccccc----ceEE
Confidence 101222333 3455555 466777777776665433222 1111 22222234567788888887 6788
Q ss_pred EEcCCCceeeee
Q 003792 207 INAMNGELLNHE 218 (795)
Q Consensus 207 ld~~tG~~~w~~ 218 (795)
+|..+=+++...
T Consensus 265 fd~t~~Kvv~s~ 276 (487)
T KOG0310|consen 265 FDTTNYKVVHSW 276 (487)
T ss_pred EEccceEEEEee
Confidence 886666666444
No 63
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=93.43 E-value=13 Score=40.60 Aligned_cols=162 Identities=9% Similarity=0.034 Sum_probs=77.6
Q ss_pred eccccceeEEEeccCceeeeeeeeeccCCCEEEEEeCC------CEEEEEECcCCcc--ceEEEcCCcceee-eeeeeeC
Q 003792 25 EDQVGLMDWHQQYIGKVKHAVFHTQKTGRKRVVVSTEE------NVIASLDLRHGEI--FWRHVLGINDVVD-GIDIALG 95 (795)
Q Consensus 25 edq~G~~dW~~~~vG~~~~~~f~~~~~~~~~v~vat~~------g~l~ALn~~tG~i--vWR~~l~~~~~i~-~l~~~~g 95 (795)
.++..++.|+..- ..|.....+....-++.||+.... +.+..+|..+.+- .|+..-+-+.... ......+
T Consensus 45 ~~~~~~~~W~~~~-~lp~~r~~~~~~~~~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~ 123 (323)
T TIGR03548 45 KDENSNLKWVKDG-QLPYEAAYGASVSVENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKD 123 (323)
T ss_pred ecCCCceeEEEcc-cCCccccceEEEEECCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEEC
Confidence 3445556787621 112211112122226778876652 4688888887752 4555332221111 1112345
Q ss_pred CEEEEEEcc-----CCeEEEEeCCCCcEeEEEeccCcc-ccCCceeccccccccCCCeEEEEe--C----CEEEEEECCC
Q 003792 96 KYVITLSSD-----GSTLRAWNLPDGQMVWESFLRGSK-HSKPLLLVPTNLKVDKDSLILVSS--K----GCLHAVSSID 163 (795)
Q Consensus 96 ~~~V~Vs~~-----g~~v~A~d~~tG~llWe~~~~~~~-~s~~~~~~~~~~~~~~~~~V~V~~--~----g~l~ald~~t 163 (795)
+.+++++|. -..+..||+.+. .|+....-+. ....... ..-++.++|.+ + ..+.++|..+
T Consensus 124 ~~iYv~GG~~~~~~~~~v~~yd~~~~--~W~~~~~~p~~~r~~~~~------~~~~~~iYv~GG~~~~~~~~~~~yd~~~ 195 (323)
T TIGR03548 124 GTLYVGGGNRNGKPSNKSYLFNLETQ--EWFELPDFPGEPRVQPVC------VKLQNELYVFGGGSNIAYTDGYKYSPKK 195 (323)
T ss_pred CEEEEEeCcCCCccCceEEEEcCCCC--CeeECCCCCCCCCCcceE------EEECCEEEEEcCCCCccccceEEEecCC
Confidence 555555553 136888998865 4886432111 1011111 11256677763 2 2356888877
Q ss_pred CcEEEEEeccCcce-eeee----EEEEecCCEEEEEEec
Q 003792 164 GEILWTRDFAAESV-EVQQ----VIQLDESDQIYVVGYA 197 (795)
Q Consensus 164 G~~~W~~~~~~~~~-~~~~----vv~s~~~~~Vyvv~~~ 197 (795)
. .|+.-.+.+.. .|.. ......++.+|++|-.
T Consensus 196 ~--~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~ 232 (323)
T TIGR03548 196 N--QWQKVADPTTDSEPISLLGAASIKINESLLLCIGGF 232 (323)
T ss_pred C--eeEECCCCCCCCCceeccceeEEEECCCEEEEECCc
Confidence 5 48764332110 0111 1112346889987643
No 64
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=92.90 E-value=14 Score=38.80 Aligned_cols=143 Identities=13% Similarity=0.099 Sum_probs=82.3
Q ss_pred EEEEE-ccCCeEEEEeCCCCcEeEEEeccCccccCCceeccccccccCCCeEEEEeCCEEEEEECCCCcE--EEEEeccC
Q 003792 98 VITLS-SDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSSKGCLHAVSSIDGEI--LWTRDFAA 174 (795)
Q Consensus 98 ~V~Vs-~~g~~v~A~d~~tG~llWe~~~~~~~~s~~~~~~~~~~~~~~~~~V~V~~~g~l~ald~~tG~~--~W~~~~~~ 174 (795)
++.++ +.+-++|-|.+.||.=.-..+.....+ ..+++.+ + .+++.+...-.++.+|..++++ +=+++...
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqV-NrLeiTp-----d-k~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~ 83 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQV-NRLEITP-----D-KKDLAAAGNQHVRLYDLNSNNPNPVATFEGHT 83 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccce-eeEEEcC-----C-cchhhhccCCeeEEEEccCCCCCceeEEeccC
Confidence 45554 568899999999999998888876655 4555554 2 3455556778888888888864 55555443
Q ss_pred cceeeeeEEEEecCCE-EEEEEecCCceeEEEEEEcCCCceeeeeeeeccCCcccceEEecCcEEEEEECCCCeEEEEEe
Q 003792 175 ESVEVQQVIQLDESDQ-IYVVGYAGSSQFHAYQINAMNGELLNHETAAFSGGFVGDVALVSSDTLVTLDTTRSILVTVSF 253 (795)
Q Consensus 175 ~~~~~~~vv~s~~~~~-Vyvv~~~g~~~~~v~ald~~tG~~~w~~~v~~~~~~~~~~~~vg~~~lv~~d~~~~~L~v~~l 253 (795)
.+.. .+.-..+++ .|-.+-+| .+-..|+.+ +.-++....++.+..-++-..+..++..|. +|.+++=||
T Consensus 84 kNVt---aVgF~~dgrWMyTgseDg----t~kIWdlR~--~~~qR~~~~~spVn~vvlhpnQteLis~dq-sg~irvWDl 153 (311)
T KOG0315|consen 84 KNVT---AVGFQCDGRWMYTGSEDG----TVKIWDLRS--LSCQRNYQHNSPVNTVVLHPNQTELISGDQ-SGNIRVWDL 153 (311)
T ss_pred CceE---EEEEeecCeEEEecCCCc----eEEEEeccC--cccchhccCCCCcceEEecCCcceEEeecC-CCcEEEEEc
Confidence 3321 111112222 33322222 445555554 222222233333433222235666777763 689999999
Q ss_pred ecCe
Q 003792 254 KNRK 257 (795)
Q Consensus 254 ~sg~ 257 (795)
+...
T Consensus 154 ~~~~ 157 (311)
T KOG0315|consen 154 GENS 157 (311)
T ss_pred cCCc
Confidence 8764
No 65
>PHA02790 Kelch-like protein; Provisional
Probab=92.85 E-value=12 Score=43.56 Aligned_cols=168 Identities=10% Similarity=0.047 Sum_probs=89.5
Q ss_pred CCEEEEEeCC------CEEEEEECcCCccceEEEcCCcceee-eeeeeeCCEEEEEEcc--CCeEEEEeCCCCcEeEEEe
Q 003792 53 RKRVVVSTEE------NVIASLDLRHGEIFWRHVLGINDVVD-GIDIALGKYVITLSSD--GSTLRAWNLPDGQMVWESF 123 (795)
Q Consensus 53 ~~~v~vat~~------g~l~ALn~~tG~ivWR~~l~~~~~i~-~l~~~~g~~~V~Vs~~--g~~v~A~d~~tG~llWe~~ 123 (795)
++.||+..+. ..+...|+++++ |+..-+-+..-. ...+..++.++++||. ...+..||+.++ .|+.-
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~--W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n--~W~~~ 346 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNN--WIPIPPMNSPRLYASGVPANNKLYVVGGLPNPTSVERWFHGDA--AWVNM 346 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCE--EEECCCCCchhhcceEEEECCEEEEECCcCCCCceEEEECCCC--eEEEC
Confidence 5678876653 357788998865 987554332111 1113456666666664 245888887655 58753
Q ss_pred ccCccccCCceeccccccccCCCeEEEEeC-----CEEEEEECCCCcEEEEEeccCcceeeeeEEEEecCCEEEEEEecC
Q 003792 124 LRGSKHSKPLLLVPTNLKVDKDSLILVSSK-----GCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAG 198 (795)
Q Consensus 124 ~~~~~~s~~~~~~~~~~~~~~~~~V~V~~~-----g~l~ald~~tG~~~W~~~~~~~~~~~~~vv~s~~~~~Vyvv~~~g 198 (795)
..-+....... ...-++.++|.++ ..+..+|+.++ .|+...+.+.-...... +.-++.+|++| |
T Consensus 347 ~~l~~~r~~~~------~~~~~g~IYviGG~~~~~~~ve~ydp~~~--~W~~~~~m~~~r~~~~~-~~~~~~IYv~G--G 415 (480)
T PHA02790 347 PSLLKPRCNPA------VASINNVIYVIGGHSETDTTTEYLLPNHD--QWQFGPSTYYPHYKSCA-LVFGRRLFLVG--R 415 (480)
T ss_pred CCCCCCCcccE------EEEECCEEEEecCcCCCCccEEEEeCCCC--EEEeCCCCCCccccceE-EEECCEEEEEC--C
Confidence 22111101111 1122577877632 34677887654 69875443221011111 34688999986 3
Q ss_pred CceeEEEEEEcCCCceeeeeeeeccCCccc-ceEEecCcEEEEE
Q 003792 199 SSQFHAYQINAMNGELLNHETAAFSGGFVG-DVALVSSDTLVTL 241 (795)
Q Consensus 199 ~~~~~v~ald~~tG~~~w~~~v~~~~~~~~-~~~~vg~~~lv~~ 241 (795)
.+..+|+.++ .|+.--..+....+ ...++++.++++.
T Consensus 416 ----~~e~ydp~~~--~W~~~~~m~~~r~~~~~~v~~~~IYviG 453 (480)
T PHA02790 416 ----NAEFYCESSN--TWTLIDDPIYPRDNPELIIVDNKLLLIG 453 (480)
T ss_pred ----ceEEecCCCC--cEeEcCCCCCCccccEEEEECCEEEEEC
Confidence 3667888765 67764333322222 2333455555544
No 66
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=92.55 E-value=16 Score=42.34 Aligned_cols=192 Identities=13% Similarity=0.120 Sum_probs=98.4
Q ss_pred CCCEEEEEeCCCEEEEEECcCC-ccceEEEcCCcceeeeeeeeeCCEEEEEEccCCeEEEEeCCCCcEeEEEeccCcccc
Q 003792 52 GRKRVVVSTEENVIASLDLRHG-EIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHS 130 (795)
Q Consensus 52 ~~~~v~vat~~g~l~ALn~~tG-~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~~~~~~~s 130 (795)
++..+..++.+..+...|.+++ ..+ |...+-...+..+.....+..++-++.++.+|.||..+|+..=.........
T Consensus 214 d~~~l~s~s~D~tiriwd~~~~~~~~-~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~i- 291 (456)
T KOG0266|consen 214 DGSYLLSGSDDKTLRIWDLKDDGRNL-KTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGI- 291 (456)
T ss_pred CCcEEEEecCCceEEEeeccCCCeEE-EEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCce-
Confidence 3556888889999999888443 333 2222222223222122222444435567899999999999987777766543
Q ss_pred CCceeccccccccCCCeEEE-E-eCCEEEEEECCCCcEE--EEEeccCcceeeeeEEEEecCCEEEEEEecCCceeEEEE
Q 003792 131 KPLLLVPTNLKVDKDSLILV-S-SKGCLHAVSSIDGEIL--WTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQ 206 (795)
Q Consensus 131 ~~~~~~~~~~~~~~~~~V~V-~-~~g~l~ald~~tG~~~--W~~~~~~~~~~~~~vv~s~~~~~Vyvv~~~g~~~~~v~a 206 (795)
....+ ..++..++ . .++.+...|..+|..+ =+............+..+..+..+++...++ .+.-
T Consensus 292 s~~~f-------~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~----~~~~ 360 (456)
T KOG0266|consen 292 SGLAF-------SPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDR----TLKL 360 (456)
T ss_pred EEEEE-------CCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCC----eEEE
Confidence 11111 12344444 4 4999999999999943 2211111110012222122333344333332 5666
Q ss_pred EEcCCCceeeeeeeeccC--CcccceEEecCcEEEEEECCCCeEEEEEeecCe
Q 003792 207 INAMNGELLNHETAAFSG--GFVGDVALVSSDTLVTLDTTRSILVTVSFKNRK 257 (795)
Q Consensus 207 ld~~tG~~~w~~~v~~~~--~~~~~~~~vg~~~lv~~d~~~~~L~v~~l~sg~ 257 (795)
.|..+|....++...... .+...+...++..++.. ...+.+++-++.++.
T Consensus 361 w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg-~~d~~v~~~~~~s~~ 412 (456)
T KOG0266|consen 361 WDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSG-SEDGSVYVWDSSSGG 412 (456)
T ss_pred EEccCCcceeeecccCCcceeEecccccCCCCeEEEE-eCCceEEEEeCCccc
Confidence 688888877666422221 01011111122233322 234567777766654
No 67
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=92.52 E-value=19 Score=39.33 Aligned_cols=190 Identities=11% Similarity=0.136 Sum_probs=92.1
Q ss_pred EEEEEeC-CCEEEEEECcC-CccceEEEcCCcceeeeeeeeeCCEEEEEEc-cCCeEEEEeCC-CCcEeEEEeccCcccc
Q 003792 55 RVVVSTE-ENVIASLDLRH-GEIFWRHVLGINDVVDGIDIALGKYVITLSS-DGSTLRAWNLP-DGQMVWESFLRGSKHS 130 (795)
Q Consensus 55 ~v~vat~-~g~l~ALn~~t-G~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~-~g~~v~A~d~~-tG~llWe~~~~~~~~s 130 (795)
++|++.. ++.|..+|..+ |++.=.+.++..+....+.+..++..+++++ ..+.+..|+.. +|++.=......+
T Consensus 3 ~~y~~~~~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~--- 79 (330)
T PRK11028 3 IVYIASPESQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLP--- 79 (330)
T ss_pred EEEEEcCCCCCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCC---
Confidence 4788754 67788888864 6543334443332223332233455677654 35678888875 5654211111111
Q ss_pred CCceeccccccccC-CCeEEEE--eCCEEEEEECC-CCcEE-EEEeccCcceeeeeEEEEecCCEEEEEEecCCceeEEE
Q 003792 131 KPLLLVPTNLKVDK-DSLILVS--SKGCLHAVSSI-DGEIL-WTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAY 205 (795)
Q Consensus 131 ~~~~~~~~~~~~~~-~~~V~V~--~~g~l~ald~~-tG~~~-W~~~~~~~~~~~~~vv~s~~~~~Vyvv~~~g~~~~~v~ 205 (795)
..+..+ ..+. ++.+++. .++.+..++.. +|... -....+.. ..+..+....++..+|+.+...+ .+.
T Consensus 80 ~~p~~i----~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~-~~~~~~~~~p~g~~l~v~~~~~~---~v~ 151 (330)
T PRK11028 80 GSPTHI----STDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGL-EGCHSANIDPDNRTLWVPCLKED---RIR 151 (330)
T ss_pred CCceEE----EECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCC-CcccEeEeCCCCCEEEEeeCCCC---EEE
Confidence 111111 1222 3456665 37888888775 44321 11111111 11233322335567887665433 566
Q ss_pred EEEcCC-Cceeee--eeeeccCCcc-cceEEe-cCcEEEEEECCCCeEEEEEeec
Q 003792 206 QINAMN-GELLNH--ETAAFSGGFV-GDVALV-SSDTLVTLDTTRSILVTVSFKN 255 (795)
Q Consensus 206 ald~~t-G~~~w~--~~v~~~~~~~-~~~~~v-g~~~lv~~d~~~~~L~v~~l~s 255 (795)
.+|..+ |...-. ..+..+.+-. ..+.+- ++..+++++...+.+.+.++..
T Consensus 152 v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~ 206 (330)
T PRK11028 152 LFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKD 206 (330)
T ss_pred EEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeC
Confidence 666655 543211 1112221111 122222 4456777776678999999873
No 68
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.43 E-value=4.9 Score=44.40 Aligned_cols=153 Identities=9% Similarity=0.160 Sum_probs=94.4
Q ss_pred cCCCEEEEEeCCCEEEEEECcCCc-----cceEEEcCCcceeeeeeee-eCCEEEEEEccC--CeEEEEeCCCCcEeEEE
Q 003792 51 TGRKRVVVSTEENVIASLDLRHGE-----IFWRHVLGINDVVDGIDIA-LGKYVITLSSDG--STLRAWNLPDGQMVWES 122 (795)
Q Consensus 51 ~~~~~v~vat~~g~l~ALn~~tG~-----ivWR~~l~~~~~i~~l~~~-~g~~~V~Vs~~g--~~v~A~d~~tG~llWe~ 122 (795)
..++.|+++.++|.+...+.++|. ++|-+..+.- ..++-. ....+|..||.- ..+--||.+.++.+|+.
T Consensus 113 ~~dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g~g~---~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~a 189 (412)
T KOG3881|consen 113 LADGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATGPGL---YDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSA 189 (412)
T ss_pred hcCCEEEEEecCCcEEEEeccCCccccccceeeecCCce---eeeccCCCCCceEecCchhcccceeeeecccceeeeec
Confidence 347789999999999888888544 5555544322 111111 233455545543 56999999999999998
Q ss_pred eccCc-cc-------cCCceeccccccccCCCeEEEE--eCCEEEEEECCCCc-EEEEEeccCcceeeeeEEEEecCCEE
Q 003792 123 FLRGS-KH-------SKPLLLVPTNLKVDKDSLILVS--SKGCLHAVSSIDGE-ILWTRDFAAESVEVQQVIQLDESDQI 191 (795)
Q Consensus 123 ~~~~~-~~-------s~~~~~~~~~~~~~~~~~V~V~--~~g~l~ald~~tG~-~~W~~~~~~~~~~~~~vv~s~~~~~V 191 (795)
.=-.. .+ -.++.+++ ......|+. .-++|+-+|...|+ ++=++......+....+ ..+++.|
T Consensus 190 KNvpnD~L~LrVPvW~tdi~Fl~-----g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l--~p~gn~I 262 (412)
T KOG3881|consen 190 KNVPNDRLGLRVPVWITDIRFLE-----GSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGL--TPSGNFI 262 (412)
T ss_pred cCCCCccccceeeeeeccceecC-----CCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeee--cCCCcEE
Confidence 63221 11 12222332 112455554 37899999998885 66666655433322222 2467778
Q ss_pred EEEEecCCceeEEEEEEcCCCceeee
Q 003792 192 YVVGYAGSSQFHAYQINAMNGELLNH 217 (795)
Q Consensus 192 yvv~~~g~~~~~v~ald~~tG~~~w~ 217 (795)
|+....| .+..+|..+|+..-.
T Consensus 263 y~gn~~g----~l~~FD~r~~kl~g~ 284 (412)
T KOG3881|consen 263 YTGNTKG----QLAKFDLRGGKLLGC 284 (412)
T ss_pred EEecccc----hhheecccCceeecc
Confidence 8755555 799999999988755
No 69
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=92.33 E-value=21 Score=39.46 Aligned_cols=195 Identities=15% Similarity=0.112 Sum_probs=111.6
Q ss_pred CCCEEEE--EeCCCEEEEEECcCCccceEEEcCCcceeeeeeeeeCCEEEEEEccCCeEEEEeCC-CCcEeEEEeccCcc
Q 003792 52 GRKRVVV--STEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLP-DGQMVWESFLRGSK 128 (795)
Q Consensus 52 ~~~~v~v--at~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~-tG~llWe~~~~~~~ 128 (795)
+++.+|| .|-..-|.-+|...++.+=. .+.++...-+ +....+...+.++| .+...... +|+.. +... ..
T Consensus 105 dgk~~~V~N~TPa~SVtVVDl~~~kvv~e--i~~PGC~~iy-P~~~~~F~~lC~DG-sl~~v~Ld~~Gk~~-~~~t--~~ 177 (342)
T PF06433_consen 105 DGKFLYVQNFTPATSVTVVDLAAKKVVGE--IDTPGCWLIY-PSGNRGFSMLCGDG-SLLTVTLDADGKEA-QKST--KV 177 (342)
T ss_dssp TSSEEEEEEESSSEEEEEEETTTTEEEEE--EEGTSEEEEE-EEETTEEEEEETTS-CEEEEEETSTSSEE-EEEE--EE
T ss_pred CCcEEEEEccCCCCeEEEEECCCCceeee--ecCCCEEEEE-ecCCCceEEEecCC-ceEEEEECCCCCEe-Eeec--cc
Confidence 3455555 55677889999999988743 4444433333 23445555667776 55555555 89987 4332 12
Q ss_pred c--cCCceecccccc-ccCCCeEEEEeCCEEEEEECCCCcEEEEEeccC-------cceee--eeEE-EEecCCEEEEEE
Q 003792 129 H--SKPLLLVPTNLK-VDKDSLILVSSKGCLHAVSSIDGEILWTRDFAA-------ESVEV--QQVI-QLDESDQIYVVG 195 (795)
Q Consensus 129 ~--s~~~~~~~~~~~-~~~~~~V~V~~~g~l~ald~~tG~~~W~~~~~~-------~~~~~--~~vv-~s~~~~~Vyvv~ 195 (795)
. ..++.+.. +.. ...+..+|+...|.|+.+|.....+.|..+..- ..+.| .|++ .....+.+|++-
T Consensus 178 F~~~~dp~f~~-~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLM 256 (342)
T PF06433_consen 178 FDPDDDPLFEH-PAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLM 256 (342)
T ss_dssp SSTTTS-B-S---EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEE
T ss_pred cCCCCcccccc-cceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEe
Confidence 1 12221211 000 111234555579999999988888765543321 11212 2222 123578999876
Q ss_pred ecCC------ceeEEEEEEcCCCceeeeeeeeccCCcccceEEe--cCcEEEEEECCCCeEEEEEeecCe
Q 003792 196 YAGS------SQFHAYQINAMNGELLNHETAAFSGGFVGDVALV--SSDTLVTLDTTRSILVTVSFKNRK 257 (795)
Q Consensus 196 ~~g~------~~~~v~ald~~tG~~~w~~~v~~~~~~~~~~~~v--g~~~lv~~d~~~~~L~v~~l~sg~ 257 (795)
-.|. ....+-++|++|++++....+..+.. +.-+. ....+++++..++.|.+.|..+|+
T Consensus 257 h~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~---Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk 323 (342)
T PF06433_consen 257 HQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPID---SIAVSQDDKPLLYALSAGDGTLDVYDAATGK 323 (342)
T ss_dssp EE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEES---EEEEESSSS-EEEEEETTTTEEEEEETTT--
T ss_pred cCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccc---eEEEccCCCcEEEEEcCCCCeEEEEeCcCCc
Confidence 5542 24789999999999998776544421 12222 224777888778899999999998
No 70
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=92.29 E-value=19 Score=38.87 Aligned_cols=217 Identities=17% Similarity=0.209 Sum_probs=116.9
Q ss_pred ccceeeccccceeEE---EeccCceeeeeeeeeccCCCEEEEEeC--CCEEEEEECcCCccceEEEcCCcceeeeeeeee
Q 003792 20 SLSLYEDQVGLMDWH---QQYIGKVKHAVFHTQKTGRKRVVVSTE--ENVIASLDLRHGEIFWRHVLGINDVVDGIDIAL 94 (795)
Q Consensus 20 ~~Al~edq~G~~dW~---~~~vG~~~~~~f~~~~~~~~~v~vat~--~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~ 94 (795)
+.-||....|+..=. ++| |. ....|-. .+..++-+|. +..|--|+..|-+-+ |+=-+-...+..+.+.-
T Consensus 37 sl~LYd~~~g~~~~ti~skky-G~-~~~~Fth---~~~~~i~sStk~d~tIryLsl~dNkyl-RYF~GH~~~V~sL~~sP 110 (311)
T KOG1446|consen 37 SLRLYDSLSGKQVKTINSKKY-GV-DLACFTH---HSNTVIHSSTKEDDTIRYLSLHDNKYL-RYFPGHKKRVNSLSVSP 110 (311)
T ss_pred eEEEEEcCCCceeeEeecccc-cc-cEEEEec---CCceEEEccCCCCCceEEEEeecCceE-EEcCCCCceEEEEEecC
Confidence 456777766663222 222 21 1223432 2556666665 678888888776543 22112222344443333
Q ss_pred CCEEEEEEccCCeEEEEeCCCCcEeEEEeccCccccCCceeccccccccCCCeEEEEe-CC-EEEEEECCC--CcEEEEE
Q 003792 95 GKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSS-KG-CLHAVSSID--GEILWTR 170 (795)
Q Consensus 95 g~~~V~Vs~~g~~v~A~d~~tG~llWe~~~~~~~~s~~~~~~~~~~~~~~~~~V~V~~-~g-~l~ald~~t--G~~~W~~ 170 (795)
.++.+.=++.+++||.||...=+-.=-..+.+. ++. +-+..+.+++.. ++ .+..+|..+ +.+-=++
T Consensus 111 ~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~------pi~----AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf 180 (311)
T KOG1446|consen 111 KDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR------PIA----AFDPEGLIFALANGSELIKLYDLRSFDKGPFTTF 180 (311)
T ss_pred CCCeEEecccCCeEEeeEecCCCCceEEecCCC------cce----eECCCCcEEEEecCCCeEEEEEecccCCCCceeE
Confidence 445555345678999999874332211222221 222 234467888864 33 666666543 3344444
Q ss_pred eccCcc-eeeeeEEEEecCCEEEEEEecCCceeEEEEEEcCCCceeeeeeeecc-CCcccceEEe-cCcEEEEEECCCCe
Q 003792 171 DFAAES-VEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAFS-GGFVGDVALV-SSDTLVTLDTTRSI 247 (795)
Q Consensus 171 ~~~~~~-~~~~~vv~s~~~~~Vyvv~~~g~~~~~v~ald~~tG~~~w~~~v~~~-~~~~~~~~~v-g~~~lv~~d~~~~~ 247 (795)
..+.+. .+...+-. ..+|+..+++-.++ .++.+|+-+|..+........ ..+..++.+. .++.+++.+ +.|.
T Consensus 181 ~i~~~~~~ew~~l~F-S~dGK~iLlsT~~s---~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs-~dg~ 255 (311)
T KOG1446|consen 181 SITDNDEAEWTDLEF-SPDGKSILLSTNAS---FIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGS-DDGT 255 (311)
T ss_pred ccCCCCccceeeeEE-cCCCCEEEEEeCCC---cEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEec-CCCc
Confidence 443221 11223322 35666666676655 788899999998766654332 2233444443 555555554 5699
Q ss_pred EEEEEeecCe
Q 003792 248 LVTVSFKNRK 257 (795)
Q Consensus 248 L~v~~l~sg~ 257 (795)
+++-++++|.
T Consensus 256 i~vw~~~tg~ 265 (311)
T KOG1446|consen 256 IHVWNLETGK 265 (311)
T ss_pred EEEEEcCCCc
Confidence 9999999987
No 71
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=92.29 E-value=7 Score=41.65 Aligned_cols=154 Identities=14% Similarity=0.145 Sum_probs=85.1
Q ss_pred CCEEEEEEcc--C-CeEEEEeCCCCcEeEEEeccCccccCCceeccccccccCCCeEEEEe--CCEEEEEECCCCcEEEE
Q 003792 95 GKYVITLSSD--G-STLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSS--KGCLHAVSSIDGEILWT 169 (795)
Q Consensus 95 g~~~V~Vs~~--g-~~v~A~d~~tG~llWe~~~~~~~~s~~~~~~~~~~~~~~~~~V~V~~--~g~l~ald~~tG~~~W~ 169 (795)
+++.++.|++ | +.||-+|..||+.+.+..+....+..++.+ . ++.++.+. .+..+.+|.++-+++=+
T Consensus 54 ~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~-------~-~d~l~qLTWk~~~~f~yd~~tl~~~~~ 125 (264)
T PF05096_consen 54 DDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITI-------L-GDKLYQLTWKEGTGFVYDPNTLKKIGT 125 (264)
T ss_dssp ETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEE-------E-TTEEEEEESSSSEEEEEETTTTEEEEE
T ss_pred CCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEE-------E-CCEEEEEEecCCeEEEEccccceEEEE
Confidence 5556666542 3 689999999999999999987654222222 2 46677763 89999999999998877
Q ss_pred EeccCcceeeeeEEEEecCCEEEEEEecCCceeEEEEEEcCCCceeeeeeeeccC----CcccceEEecCcEEEEEECCC
Q 003792 170 RDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAFSG----GFVGDVALVSSDTLVTLDTTR 245 (795)
Q Consensus 170 ~~~~~~~~~~~~vv~s~~~~~Vyvv~~~g~~~~~v~ald~~tG~~~w~~~v~~~~----~~~~~~~~vg~~~lv~~d~~~ 245 (795)
++.+.... .+. ..+..+++ + +|++ +++-+|+++-+...+.++.... .+.+ .-++++.+++=+- .+
T Consensus 126 ~~y~~EGW---GLt--~dg~~Li~-S-DGS~--~L~~~dP~~f~~~~~i~V~~~g~pv~~LNE-LE~i~G~IyANVW-~t 194 (264)
T PF05096_consen 126 FPYPGEGW---GLT--SDGKRLIM-S-DGSS--RLYFLDPETFKEVRTIQVTDNGRPVSNLNE-LEYINGKIYANVW-QT 194 (264)
T ss_dssp EE-SSS-----EEE--ECSSCEEE-E--SSS--EEEEE-TTT-SEEEEEE-EETTEE---EEE-EEEETTEEEEEET-TS
T ss_pred EecCCcce---EEE--cCCCEEEE-E-CCcc--ceEEECCcccceEEEEEEEECCEECCCcEe-EEEEcCEEEEEeC-CC
Confidence 77765433 231 24444553 3 4433 6888999998888777654321 1111 1122322222121 23
Q ss_pred CeEEEEEeecCeeeeEEEeeccc
Q 003792 246 SILVTVSFKNRKIAFQETHLSNL 268 (795)
Q Consensus 246 ~~L~v~~l~sg~~~~~~~~l~~l 268 (795)
..+.++|.++|.+ ...+.++.|
T Consensus 195 d~I~~Idp~tG~V-~~~iDls~L 216 (264)
T PF05096_consen 195 DRIVRIDPETGKV-VGWIDLSGL 216 (264)
T ss_dssp SEEEEEETTT-BE-EEEEE-HHH
T ss_pred CeEEEEeCCCCeE-EEEEEhhHh
Confidence 4566666666663 333444443
No 72
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=92.14 E-value=17 Score=37.92 Aligned_cols=150 Identities=16% Similarity=0.192 Sum_probs=79.8
Q ss_pred CCEEEEEe-CCCEEEEEECcCCccceEEEcCCcceeeeeeeeeCCEEEEEEccCCeEEEEeCCCCcEeEEEeccCccccC
Q 003792 53 RKRVVVST-EENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSK 131 (795)
Q Consensus 53 ~~~v~vat-~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~~~~~~~s~ 131 (795)
++.+|+.+ ..+.|+.+|+++|+.. ...++. ..++.....++.++++..+ .++.+|..+|+..--.......
T Consensus 11 ~g~l~~~D~~~~~i~~~~~~~~~~~-~~~~~~---~~G~~~~~~~g~l~v~~~~-~~~~~d~~~g~~~~~~~~~~~~--- 82 (246)
T PF08450_consen 11 DGRLYWVDIPGGRIYRVDPDTGEVE-VIDLPG---PNGMAFDRPDGRLYVADSG-GIAVVDPDTGKVTVLADLPDGG--- 82 (246)
T ss_dssp TTEEEEEETTTTEEEEEETTTTEEE-EEESSS---EEEEEEECTTSEEEEEETT-CEEEEETTTTEEEEEEEEETTC---
T ss_pred CCEEEEEEcCCCEEEEEECCCCeEE-EEecCC---CceEEEEccCCEEEEEEcC-ceEEEecCCCcEEEEeeccCCC---
Confidence 67788877 4789999999887652 233333 2233223245667766654 4566699999654444432111
Q ss_pred CceeccccccccCCCeEEEEe--C--------CEEEEEECCCCcEEEEEe-ccCcceeeeeEEEEecCCEEEEEEecCCc
Q 003792 132 PLLLVPTNLKVDKDSLILVSS--K--------GCLHAVSSIDGEILWTRD-FAAESVEVQQVIQLDESDQIYVVGYAGSS 200 (795)
Q Consensus 132 ~~~~~~~~~~~~~~~~V~V~~--~--------g~l~ald~~tG~~~W~~~-~~~~~~~~~~vv~s~~~~~Vyvv~~~g~~ 200 (795)
.....+.+...+.++.+++.. . |.|++++.. |++..... ... +-.+..+..+..+|+.....+
T Consensus 83 ~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~----pNGi~~s~dg~~lyv~ds~~~- 156 (246)
T PF08450_consen 83 VPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGF----PNGIAFSPDGKTLYVADSFNG- 156 (246)
T ss_dssp SCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESS----EEEEEEETTSSEEEEEETTTT-
T ss_pred cccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCccc----ccceEECCcchheeecccccc-
Confidence 011222222445567788853 1 789999988 77543332 222 223333345567887544433
Q ss_pred eeEEEEEEcC--CCceeeee
Q 003792 201 QFHAYQINAM--NGELLNHE 218 (795)
Q Consensus 201 ~~~v~ald~~--tG~~~w~~ 218 (795)
++..++.. +++.....
T Consensus 157 --~i~~~~~~~~~~~~~~~~ 174 (246)
T PF08450_consen 157 --RIWRFDLDADGGELSNRR 174 (246)
T ss_dssp --EEEEEEEETTTCCEEEEE
T ss_pred --eeEEEeccccccceeeee
Confidence 56666554 44343333
No 73
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=91.95 E-value=15 Score=43.49 Aligned_cols=180 Identities=15% Similarity=0.179 Sum_probs=115.7
Q ss_pred CCEEEEEeCCCEEEEEECcCCccceEEEcCCcceeeeeeeeeCCEEEEEEccCCeEEEEeCCCCcEeEEEeccCccccCC
Q 003792 53 RKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKP 132 (795)
Q Consensus 53 ~~~v~vat~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~~~~~~~s~~ 132 (795)
++.++.++.++.|...|..+|...=..-.+..+.+.++....+++.++-++.+.++|-||..+|.-.=.........
T Consensus 218 ~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv--- 294 (537)
T KOG0274|consen 218 DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSV--- 294 (537)
T ss_pred cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceE---
Confidence 67788999999999999999987766555444555555444456666655557899999999999876666554432
Q ss_pred ceeccccccccCCCeEEEE--eCCEEEEEECCCCcEEEEEeccCcceeeeeEEEEecCCEEEEEEecCCceeEEEEEEcC
Q 003792 133 LLLVPTNLKVDKDSLILVS--SKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAM 210 (795)
Q Consensus 133 ~~~~~~~~~~~~~~~V~V~--~~g~l~ald~~tG~~~W~~~~~~~~~~~~~vv~s~~~~~Vyvv~~~g~~~~~v~ald~~ 210 (795)
..+ ...+.+.+. .|..|.+-+..+|..+=....... +-+.+ ....+.++..+++| .+-..|+.
T Consensus 295 -~~~------~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~---~V~~v-~~~~~~lvsgs~d~----~v~VW~~~ 359 (537)
T KOG0274|consen 295 -RCL------TIDPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTG---PVNCV-QLDEPLLVSGSYDG----TVKVWDPR 359 (537)
T ss_pred -EEE------EccCceEeeccCCceEEEEeccCcceEEEeccccc---cEEEE-EecCCEEEEEecCc----eEEEEEhh
Confidence 121 113444454 377788777777776655543211 22333 23577777777776 68888999
Q ss_pred CCceeeeeeeeccCCccc--ceEEecC-cEEEEEECCCCeEEEEEeecC
Q 003792 211 NGELLNHETAAFSGGFVG--DVALVSS-DTLVTLDTTRSILVTVSFKNR 256 (795)
Q Consensus 211 tG~~~w~~~v~~~~~~~~--~~~~vg~-~~lv~~d~~~~~L~v~~l~sg 256 (795)
+|+.+...+- -++ .++++++ +.++-... ++.+.+=|+.++
T Consensus 360 ~~~cl~sl~g-----H~~~V~sl~~~~~~~~~Sgs~-D~~IkvWdl~~~ 402 (537)
T KOG0274|consen 360 TGKCLKSLSG-----HTGRVYSLIVDSENRLLSGSL-DTTIKVWDLRTK 402 (537)
T ss_pred hceeeeeecC-----CcceEEEEEecCcceEEeeee-ccceEeecCCch
Confidence 9998877642 112 2344565 55544432 366777777776
No 74
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=91.91 E-value=4 Score=42.68 Aligned_cols=108 Identities=18% Similarity=0.240 Sum_probs=74.8
Q ss_pred CCEEEEEEccCCeEEEEeCCCCcEeEEEeccCccccCCceeccccccccCCCeEEEE-eCCEEEEEECCCCcEEEEEecc
Q 003792 95 GKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVS-SKGCLHAVSSIDGEILWTRDFA 173 (795)
Q Consensus 95 g~~~V~Vs~~g~~v~A~d~~tG~llWe~~~~~~~~s~~~~~~~~~~~~~~~~~V~V~-~~g~l~ald~~tG~~~W~~~~~ 173 (795)
.+..+.-+++++.||.||..||...=...+..++- ++++.. ++.++.. .++.+.-.|+++=.++=.++.|
T Consensus 154 eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~Vt--SlEvs~-------dG~ilTia~gssV~Fwdaksf~~lKs~k~P 224 (334)
T KOG0278|consen 154 EDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVT--SLEVSQ-------DGRILTIAYGSSVKFWDAKSFGLLKSYKMP 224 (334)
T ss_pred cCceEEeeccCCceEEEEeccCcEEEEEecCCCCc--ceeecc-------CCCEEEEecCceeEEeccccccceeeccCc
Confidence 33344324678899999999999998888877653 444543 5555554 6888999999998888888887
Q ss_pred CcceeeeeEEEEecCCEEEEEEecCCceeEEEEEEcCCCceeeee
Q 003792 174 AESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHE 218 (795)
Q Consensus 174 ~~~~~~~~vv~s~~~~~Vyvv~~~g~~~~~v~ald~~tG~~~w~~ 218 (795)
-... .+++ .-...+||. |+..++++-+|-.||+.+-.+
T Consensus 225 ~nV~-SASL---~P~k~~fVa---Gged~~~~kfDy~TgeEi~~~ 262 (334)
T KOG0278|consen 225 CNVE-SASL---HPKKEFFVA---GGEDFKVYKFDYNTGEEIGSY 262 (334)
T ss_pred cccc-cccc---cCCCceEEe---cCcceEEEEEeccCCceeeec
Confidence 5322 1122 112356664 345569999999999988664
No 75
>PLN00181 protein SPA1-RELATED; Provisional
Probab=91.64 E-value=43 Score=41.62 Aligned_cols=106 Identities=12% Similarity=0.130 Sum_probs=65.9
Q ss_pred CCEEEEEeCCCEEEEEECcCCccceEEEcCCcceeeeeeee-eCCEEEEEEccCCeEEEEeCCCCcEeEEEeccCccccC
Q 003792 53 RKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIA-LGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSK 131 (795)
Q Consensus 53 ~~~v~vat~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~-~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~~~~~~~s~ 131 (795)
...+++++.+|.|...|..+|+.+..+.--. +.+..+... .++..++.++.++.++.||..+|..+-.........
T Consensus 545 ~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~-~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~-- 621 (793)
T PLN00181 545 KSQVASSNFEGVVQVWDVARSQLVTEMKEHE-KRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANIC-- 621 (793)
T ss_pred CCEEEEEeCCCeEEEEECCCCeEEEEecCCC-CCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeE--
Confidence 4568888899999999999999887764322 234444222 233445546667899999999998765554332211
Q ss_pred CceeccccccccCCCeEEEE-eCCEEEEEECCCCcE
Q 003792 132 PLLLVPTNLKVDKDSLILVS-SKGCLHAVSSIDGEI 166 (795)
Q Consensus 132 ~~~~~~~~~~~~~~~~V~V~-~~g~l~ald~~tG~~ 166 (795)
.+.. ....+..+++. .+|.++..|..+++.
T Consensus 622 ---~v~~--~~~~g~~latgs~dg~I~iwD~~~~~~ 652 (793)
T PLN00181 622 ---CVQF--PSESGRSLAFGSADHKVYYYDLRNPKL 652 (793)
T ss_pred ---EEEE--eCCCCCEEEEEeCCCeEEEEECCCCCc
Confidence 1110 01112334444 489999999888763
No 76
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=91.43 E-value=17 Score=43.96 Aligned_cols=155 Identities=14% Similarity=0.167 Sum_probs=102.8
Q ss_pred eccCCCEEEEEeCCCEEEEEECcCCccceEEEcCCcceeeeeeeeeCCEEEEEEccCCeEEEEeCCCCcEeEEEeccCcc
Q 003792 49 QKTGRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSK 128 (795)
Q Consensus 49 ~~~~~~~v~vat~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~~~~~~ 128 (795)
|++.=++|.+++.+|.+.-+|-++|+++....--.. .|..+..+-.=|+|.+|-.+|+|.-+|...|+.+-+++.+-+.
T Consensus 168 P~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s-~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~ 246 (910)
T KOG1539|consen 168 PSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFS-RITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGR 246 (910)
T ss_pred chhheeeEEEeecCCcEEEEEeccCcEEEEeccccc-ceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccc
Confidence 555577899999999999999999999988754332 2333322223468888887789999999999999999986333
Q ss_pred ccCCceeccccccccCCCeEEEE--eCCEEEEEECCCCcEEEEEeccC-cceeeeeEEEEecCCEEEEEEecCCceeEEE
Q 003792 129 HSKPLLLVPTNLKVDKDSLILVS--SKGCLHAVSSIDGEILWTRDFAA-ESVEVQQVIQLDESDQIYVVGYAGSSQFHAY 205 (795)
Q Consensus 129 ~s~~~~~~~~~~~~~~~~~V~V~--~~g~l~ald~~tG~~~W~~~~~~-~~~~~~~vv~s~~~~~Vyvv~~~g~~~~~v~ 205 (795)
. ..+.+. .| +..+++. +.|.+.-.|.+.-+..|...... +......+. .+..|.+ +..+...+++.
T Consensus 247 V-tslSFr-----tD-G~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl---~~epVl~-ta~~DnSlk~~ 315 (910)
T KOG1539|consen 247 V-TSLSFR-----TD-GNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFL---PGEPVLV-TAGADNSLKVW 315 (910)
T ss_pred e-eEEEec-----cC-CCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceec---CCCceEe-eccCCCceeEE
Confidence 2 122222 23 3345554 36889999998888889877543 222111221 2333443 33333568899
Q ss_pred EEEcCCCcee
Q 003792 206 QINAMNGELL 215 (795)
Q Consensus 206 ald~~tG~~~ 215 (795)
.+|..+|.++
T Consensus 316 vfD~~dg~pR 325 (910)
T KOG1539|consen 316 VFDSGDGVPR 325 (910)
T ss_pred EeeCCCCcch
Confidence 9998888644
No 77
>PTZ00420 coronin; Provisional
Probab=91.26 E-value=22 Score=42.35 Aligned_cols=69 Identities=4% Similarity=0.078 Sum_probs=48.5
Q ss_pred EEEEeCCCEEEEEECcCCccceEEEcCCcceeeeeeeeeCCEEEEEEccCCeEEEEeCCCCcEeEEEeccC
Q 003792 56 VVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRG 126 (795)
Q Consensus 56 v~vat~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~~~~ 126 (795)
+..++.++.|.-.|.++|+.+++..... .+..+.....+..++.++.++.++.||+.+|+.+-+.....
T Consensus 141 LaSgS~DgtIrIWDl~tg~~~~~i~~~~--~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~ 209 (568)
T PTZ00420 141 MCSSGFDSFVNIWDIENEKRAFQINMPK--KLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHD 209 (568)
T ss_pred EEEEeCCCeEEEEECCCCcEEEEEecCC--cEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEeccc
Confidence 3467889999999999999888765432 24443222334455545557799999999999886665543
No 78
>PRK05137 tolB translocation protein TolB; Provisional
Probab=91.16 E-value=33 Score=39.31 Aligned_cols=188 Identities=15% Similarity=0.069 Sum_probs=90.9
Q ss_pred cCCCEEEEEeC---CCEEEEEECcCCccceEEEcCCcceeeeeee-eeCCEEEEEEcc--CCeEEEEeCCCCcEeEEEec
Q 003792 51 TGRKRVVVSTE---ENVIASLDLRHGEIFWRHVLGINDVVDGIDI-ALGKYVITLSSD--GSTLRAWNLPDGQMVWESFL 124 (795)
Q Consensus 51 ~~~~~v~vat~---~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~-~~g~~~V~Vs~~--g~~v~A~d~~tG~llWe~~~ 124 (795)
+++++|+..+. +..|+.+|.++|+. ++....++.+..... ..|+.+++..+. ...++.||..+|.+. .+
T Consensus 211 pDG~~lay~s~~~g~~~i~~~dl~~g~~--~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~---~L 285 (435)
T PRK05137 211 PNRQEITYMSYANGRPRVYLLDLETGQR--ELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTT---RL 285 (435)
T ss_pred CCCCEEEEEEecCCCCEEEEEECCCCcE--EEeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceE---Ec
Confidence 44556655543 46899999999864 333222222222211 245555554432 246999999988753 22
Q ss_pred cCcc-ccCCceeccccccccCCCeEEEEe----CCEEEEEECCCCcEEEEEeccCcceeeeeEEEEecCCEEEEEEecCC
Q 003792 125 RGSK-HSKPLLLVPTNLKVDKDSLILVSS----KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGS 199 (795)
Q Consensus 125 ~~~~-~s~~~~~~~~~~~~~~~~~V~V~~----~g~l~ald~~tG~~~W~~~~~~~~~~~~~vv~s~~~~~Vyvv~~~g~ 199 (795)
.... ....+... .+ ++.++..+ ...++.+|..+|++.--..... .. ..+..+.++..+++....++
T Consensus 286 t~~~~~~~~~~~s-----pD-G~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~-~~--~~~~~SpdG~~ia~~~~~~~ 356 (435)
T PRK05137 286 TDSPAIDTSPSYS-----PD-GSQIVFESDRSGSPQLYVMNADGSNPRRISFGGG-RY--STPVWSPRGDLIAFTKQGGG 356 (435)
T ss_pred cCCCCccCceeEc-----CC-CCEEEEEECCCCCCeEEEEECCCCCeEEeecCCC-cc--cCeEECCCCCEEEEEEcCCC
Confidence 2111 10111222 23 23333333 2379999988776543221111 11 11222345666666554332
Q ss_pred ceeEEEEEEcCCCceeeeeeeeccCCcccceEEe-cCcEEEEEECCC-----CeEEEEEeecCe
Q 003792 200 SQFHAYQINAMNGELLNHETAAFSGGFVGDVALV-SSDTLVTLDTTR-----SILVTVSFKNRK 257 (795)
Q Consensus 200 ~~~~v~ald~~tG~~~w~~~v~~~~~~~~~~~~v-g~~~lv~~d~~~-----~~L~v~~l~sg~ 257 (795)
...+..+|+.+|... . +...... ..+.+- ++..+++..... ..|+++++..+.
T Consensus 357 -~~~i~~~d~~~~~~~-~--lt~~~~~-~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~ 415 (435)
T PRK05137 357 -QFSIGVMKPDGSGER-I--LTSGFLV-EGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRN 415 (435)
T ss_pred -ceEEEEEECCCCceE-e--ccCCCCC-CCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCc
Confidence 346777887666532 1 1111122 222232 344555543222 368888887665
No 79
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=91.11 E-value=1.9 Score=50.01 Aligned_cols=150 Identities=16% Similarity=0.219 Sum_probs=93.8
Q ss_pred cCCCEEEEEeCCCEEEEEECcCCccceEEEcCCc---------------ceeeeeee-eeCCEEEEEEccCCeEEEEeCC
Q 003792 51 TGRKRVVVSTEENVIASLDLRHGEIFWRHVLGIN---------------DVVDGIDI-ALGKYVITLSSDGSTLRAWNLP 114 (795)
Q Consensus 51 ~~~~~v~vat~~g~l~ALn~~tG~ivWR~~l~~~---------------~~i~~l~~-~~g~~~V~Vs~~g~~v~A~d~~ 114 (795)
.++.++-|++++|.|- +||...+.. +.|..++. ....+++.+++.+.+++.||..
T Consensus 638 FD~~rLAVa~ddg~i~---------lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~ 708 (1012)
T KOG1445|consen 638 FDDERLAVATDDGQIN---------LWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLA 708 (1012)
T ss_pred CChHHeeecccCceEE---------EEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehh
Confidence 3467899999998873 577655322 11223322 2345667667778899999999
Q ss_pred CCcEeEEEeccCccccCCceeccccccccCCCeEEE--EeCCEEEEEECCCCcEE-EEEeccCcceeeeeEEEEecCCEE
Q 003792 115 DGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILV--SSKGCLHAVSSIDGEIL-WTRDFAAESVEVQQVIQLDESDQI 191 (795)
Q Consensus 115 tG~llWe~~~~~~~~s~~~~~~~~~~~~~~~~~V~V--~~~g~l~ald~~tG~~~-W~~~~~~~~~~~~~vv~s~~~~~V 191 (795)
++++.=+........ .+. ++..++..+. -.||+|+.+++.++++. .+-+-+.+.. -++++.+..+..|
T Consensus 709 ~~~~~~~l~gHtdqI-f~~-------AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtR-gARi~wacdgr~v 779 (1012)
T KOG1445|consen 709 NAKLYSRLVGHTDQI-FGI-------AWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTR-GARILWACDGRIV 779 (1012)
T ss_pred hhhhhheeccCcCce-eEE-------EECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCc-ceeEEEEecCcEE
Confidence 999887776554432 122 2222333333 36999999999988753 4433343322 4556556677888
Q ss_pred EEEEecCCceeEEEEEEcC--CCceeeee
Q 003792 192 YVVGYAGSSQFHAYQINAM--NGELLNHE 218 (795)
Q Consensus 192 yvv~~~g~~~~~v~ald~~--tG~~~w~~ 218 (795)
.++|++..+...+..+|++ .|.++...
T Consensus 780 iv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~ 808 (1012)
T KOG1445|consen 780 IVVGFDKSSERQVQMYDAQTLDLRPLYTQ 808 (1012)
T ss_pred EEecccccchhhhhhhhhhhccCCcceee
Confidence 8888887766677777766 34455444
No 80
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=90.93 E-value=12 Score=47.95 Aligned_cols=157 Identities=17% Similarity=0.177 Sum_probs=86.8
Q ss_pred CCEEEEEe-CCCEEEEEECcCCccceEEEcCCc------c---------eeeeeeeeeCCEEEEEE-ccCCeEEEEeCCC
Q 003792 53 RKRVVVST-EENVIASLDLRHGEIFWRHVLGIN------D---------VVDGIDIALGKYVITLS-SDGSTLRAWNLPD 115 (795)
Q Consensus 53 ~~~v~vat-~~g~l~ALn~~tG~ivWR~~l~~~------~---------~i~~l~~~~g~~~V~Vs-~~g~~v~A~d~~t 115 (795)
++.+|++. .++.|.-+|+.+|.+. .....+ + ...++.+...++.+||+ ..+++|+.||..+
T Consensus 694 ~g~LyVad~~~~~I~v~d~~~g~v~--~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~t 771 (1057)
T PLN02919 694 NEKVYIAMAGQHQIWEYNISDGVTR--VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKT 771 (1057)
T ss_pred CCeEEEEECCCCeEEEEECCCCeEE--EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCC
Confidence 56788876 4678999999888652 110000 0 01123222234456665 3457999999999
Q ss_pred CcEeEEEeccC-------------ccccCCceeccccccccCCCeEEEE--eCCEEEEEECCCCcEEEEEeccCc-----
Q 003792 116 GQMVWESFLRG-------------SKHSKPLLLVPTNLKVDKDSLILVS--SKGCLHAVSSIDGEILWTRDFAAE----- 175 (795)
Q Consensus 116 G~llWe~~~~~-------------~~~s~~~~~~~~~~~~~~~~~V~V~--~~g~l~ald~~tG~~~W~~~~~~~----- 175 (795)
|...|-..... ..........|.....+.++.++|. .++++..+|..+|.+.........
T Consensus 772 g~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG 851 (1057)
T PLN02919 772 GGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDG 851 (1057)
T ss_pred CcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCC
Confidence 88655432110 0000000001111233445678886 488999999999987755432210
Q ss_pred -----c-eeeeeEEEEecCCEEEEEEecCCceeEEEEEEcCCCcee
Q 003792 176 -----S-VEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELL 215 (795)
Q Consensus 176 -----~-~~~~~vv~s~~~~~Vyvv~~~g~~~~~v~ald~~tG~~~ 215 (795)
. ..|..+. ...++.+|+.....+ .+..+|+.+|+..
T Consensus 852 ~~~~a~l~~P~GIa-vd~dG~lyVaDt~Nn---~Irvid~~~~~~~ 893 (1057)
T PLN02919 852 KALKAQLSEPAGLA-LGENGRLFVADTNNS---LIRYLDLNKGEAA 893 (1057)
T ss_pred cccccccCCceEEE-EeCCCCEEEEECCCC---EEEEEECCCCccc
Confidence 0 1244443 234667888654443 7888899998764
No 81
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=90.61 E-value=33 Score=38.55 Aligned_cols=70 Identities=11% Similarity=0.160 Sum_probs=41.7
Q ss_pred CCEEEEEeC--CCEEEEEECcCCccceEEEcCCcceee-ee-eeeeCCEEEEEEccC-----------CeEEEEeCCCCc
Q 003792 53 RKRVVVSTE--ENVIASLDLRHGEIFWRHVLGINDVVD-GI-DIALGKYVITLSSDG-----------STLRAWNLPDGQ 117 (795)
Q Consensus 53 ~~~v~vat~--~g~l~ALn~~tG~ivWR~~l~~~~~i~-~l-~~~~g~~~V~Vs~~g-----------~~v~A~d~~tG~ 117 (795)
+++||++.. .+.+..+|.++.+-.|+...+.+.... +. .+..++.++++||.+ ..+..||+.+.
T Consensus 38 ~~~iyv~gG~~~~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n- 116 (376)
T PRK14131 38 NNTVYVGLGSAGTSWYKLDLNAPSKGWTKIAAFPGGPREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTN- 116 (376)
T ss_pred CCEEEEEeCCCCCeEEEEECCCCCCCeEECCcCCCCCcccceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCC-
Confidence 678888554 367889998766667986543321111 11 134566666656642 24778888764
Q ss_pred EeEEEec
Q 003792 118 MVWESFL 124 (795)
Q Consensus 118 llWe~~~ 124 (795)
.|+.-.
T Consensus 117 -~W~~~~ 122 (376)
T PRK14131 117 -SWQKLD 122 (376)
T ss_pred -EEEeCC
Confidence 587743
No 82
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=90.37 E-value=31 Score=37.71 Aligned_cols=145 Identities=10% Similarity=0.082 Sum_probs=75.2
Q ss_pred EEEEEECcCCccceEEEcCCcceee-eeeeeeCCEEEEEEccC-----CeEEEEeCCCCcE--eEEEeccCccccCCcee
Q 003792 64 VIASLDLRHGEIFWRHVLGINDVVD-GIDIALGKYVITLSSDG-----STLRAWNLPDGQM--VWESFLRGSKHSKPLLL 135 (795)
Q Consensus 64 ~l~ALn~~tG~ivWR~~l~~~~~i~-~l~~~~g~~~V~Vs~~g-----~~v~A~d~~tG~l--lWe~~~~~~~~s~~~~~ 135 (795)
.++.|+..+.+..|+..-+-+.... +..+..++.+++++|.. ..+..+|..+.+- .|+....-+.. .
T Consensus 40 ~v~~~~~~~~~~~W~~~~~lp~~r~~~~~~~~~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~-----~ 114 (323)
T TIGR03548 40 GIYIAKDENSNLKWVKDGQLPYEAAYGASVSVENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFT-----F 114 (323)
T ss_pred eeEEEecCCCceeEEEcccCCccccceEEEEECCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcC-----c
Confidence 4667753345567988554332111 21134566676767632 3678888877652 45432211110 0
Q ss_pred ccccccccCCCeEEEEeC-------CEEEEEECCCCcEEEEEeccCcceeeeeEEEEecCCEEEEEEecCC-ceeEEEEE
Q 003792 136 VPTNLKVDKDSLILVSSK-------GCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGS-SQFHAYQI 207 (795)
Q Consensus 136 ~~~~~~~~~~~~V~V~~~-------g~l~ald~~tG~~~W~~~~~~~~~~~~~vv~s~~~~~Vyvv~~~g~-~~~~v~al 207 (795)
.... ....++.++|..+ ..+.++|..+. .|+.-.+.+............++.+|++|-..+ ....+.++
T Consensus 115 ~~~~-~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~--~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~y 191 (323)
T TIGR03548 115 ENGS-ACYKDGTLYVGGGNRNGKPSNKSYLFNLETQ--EWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKY 191 (323)
T ss_pred cCce-EEEECCEEEEEeCcCCCccCceEEEEcCCCC--CeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEE
Confidence 0000 1112567777632 36888998765 488643322110111111246789999875321 12346789
Q ss_pred EcCCCceeeee
Q 003792 208 NAMNGELLNHE 218 (795)
Q Consensus 208 d~~tG~~~w~~ 218 (795)
|+++.+ |+.
T Consensus 192 d~~~~~--W~~ 200 (323)
T TIGR03548 192 SPKKNQ--WQK 200 (323)
T ss_pred ecCCCe--eEE
Confidence 988764 765
No 83
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=90.20 E-value=5.3 Score=43.57 Aligned_cols=112 Identities=16% Similarity=0.241 Sum_probs=66.3
Q ss_pred CCEEEEEeC-CCEEEEEECcCCccceEEEcCCcce-------ee---eeeee---eCCEEEEEE-c----------cCCe
Q 003792 53 RKRVVVSTE-ENVIASLDLRHGEIFWRHVLGINDV-------VD---GIDIA---LGKYVITLS-S----------DGST 107 (795)
Q Consensus 53 ~~~v~vat~-~g~l~ALn~~tG~ivWR~~l~~~~~-------i~---~l~~~---~g~~~V~Vs-~----------~g~~ 107 (795)
++.+++.+. -..|+.+|++||+++|+.-=+.... .. -.+.. .+++.+.+= . ..++
T Consensus 154 ~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN~~~~~~~~~~s~~~ 233 (299)
T PF14269_consen 154 DGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDNANSDFNGTEPSRGL 233 (299)
T ss_pred CccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcCCCCCCCCCcCCCce
Confidence 445666665 4899999999999999974331100 11 00111 123333331 1 2368
Q ss_pred EEEEeCCCCcEeEEEecc---Cccc---cCCceeccccccccCCCeEEEE--eCCEEEEEECCCCcEEEEEec
Q 003792 108 LRAWNLPDGQMVWESFLR---GSKH---SKPLLLVPTNLKVDKDSLILVS--SKGCLHAVSSIDGEILWTRDF 172 (795)
Q Consensus 108 v~A~d~~tG~llWe~~~~---~~~~---s~~~~~~~~~~~~~~~~~V~V~--~~g~l~ald~~tG~~~W~~~~ 172 (795)
+..+|..+....|..... .+.. ......++ ++.++|. ..+++.-++ .+|+++|++..
T Consensus 234 v~~ld~~~~~~~~~~~~~~~~~~~~s~~~G~~Q~L~-------nGn~li~~g~~g~~~E~~-~~G~vv~~~~f 298 (299)
T PF14269_consen 234 VLELDPETMTVTLVREYSDHPDGFYSPSQGSAQRLP-------NGNVLIGWGNNGRISEFT-PDGEVVWEAQF 298 (299)
T ss_pred EEEEECCCCEEEEEEEeecCCCcccccCCCcceECC-------CCCEEEecCCCceEEEEC-CCCCEEEEEEC
Confidence 999999987666655544 1111 12222332 5677776 378888888 78999999853
No 84
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=90.01 E-value=33 Score=37.46 Aligned_cols=63 Identities=13% Similarity=0.266 Sum_probs=40.4
Q ss_pred CCEEEEEECCCCcEEEEEeccCcc----ee------------------eeeE--EEEecCCEEEEEEec-CCceeEEEEE
Q 003792 153 KGCLHAVSSIDGEILWTRDFAAES----VE------------------VQQV--IQLDESDQIYVVGYA-GSSQFHAYQI 207 (795)
Q Consensus 153 ~g~l~ald~~tG~~~W~~~~~~~~----~~------------------~~~v--v~s~~~~~Vyvv~~~-g~~~~~v~al 207 (795)
++.++-+|.+||+++|+|+....- .. +.-+ +.-..++.+. ++.- -. .++.+
T Consensus 95 d~~~~EiDi~TgevlfeW~a~DH~~~~~~~~~~~~~~~~g~~~~~~~D~~HiNsV~~~~~G~yL-iS~R~~~---~i~~I 170 (299)
T PF14269_consen 95 DDVFQEIDIETGEVLFEWSASDHVDPNDSYDSQDPLPGSGGSSSFPWDYFHINSVDKDDDGDYL-ISSRNTS---TIYKI 170 (299)
T ss_pred cceeEEeccCCCCEEEEEEhhheecccccccccccccCCCcCCCCCCCccEeeeeeecCCccEE-EEecccC---EEEEE
Confidence 788999999999999999764211 00 0000 1111233443 4433 22 68999
Q ss_pred EcCCCceeeeee
Q 003792 208 NAMNGELLNHET 219 (795)
Q Consensus 208 d~~tG~~~w~~~ 219 (795)
|..||+++|+..
T Consensus 171 ~~~tG~I~W~lg 182 (299)
T PF14269_consen 171 DPSTGKIIWRLG 182 (299)
T ss_pred ECCCCcEEEEeC
Confidence 999999999984
No 85
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=89.96 E-value=15 Score=39.22 Aligned_cols=194 Identities=9% Similarity=0.049 Sum_probs=109.7
Q ss_pred CCEEEEEeCCCEEEEEECcCCcc-ceEEEcCCcc-eeeeeeeeeCCEEEEEEccCCeEEEEeCCCCc-EeEEEeccCccc
Q 003792 53 RKRVVVSTEENVIASLDLRHGEI-FWRHVLGIND-VVDGIDIALGKYVITLSSDGSTLRAWNLPDGQ-MVWESFLRGSKH 129 (795)
Q Consensus 53 ~~~v~vat~~g~l~ALn~~tG~i-vWR~~l~~~~-~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~tG~-llWe~~~~~~~~ 129 (795)
++...+..+.+.|..||+||+++ .|...++... +.... +-...+.+-.++..+.-=-+|+.++. .+|........
T Consensus 114 dg~~Witd~~~aI~R~dpkt~evt~f~lp~~~a~~nlet~-vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPqG~gp- 191 (353)
T COG4257 114 DGSAWITDTGLAIGRLDPKTLEVTRFPLPLEHADANLETA-VFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQGGGP- 191 (353)
T ss_pred CCCeeEecCcceeEEecCcccceEEeecccccCCCcccce-eeCCCccEEEeeccccceecCcccCceeeeccCCCCCC-
Confidence 44466666666899999999875 3444333321 12222 23444555333322233357888876 46776644333
Q ss_pred cCCceeccccccccCCCeEEEE--eCCEEEEEECCCCcEEEEEeccCcce-eeeeEEEEecCCEEEEEEecCCceeEEEE
Q 003792 130 SKPLLLVPTNLKVDKDSLILVS--SKGCLHAVSSIDGEILWTRDFAAESV-EVQQVIQLDESDQIYVVGYAGSSQFHAYQ 206 (795)
Q Consensus 130 s~~~~~~~~~~~~~~~~~V~V~--~~g~l~ald~~tG~~~W~~~~~~~~~-~~~~vv~s~~~~~Vyvv~~~g~~~~~v~a 206 (795)
..++..+ ++.|.+. .++.+.++|..+|..- ....|.... ..+++ .+...+.+++....++ .+..
T Consensus 192 -yGi~atp-------dGsvwyaslagnaiaridp~~~~ae-v~p~P~~~~~gsRri-wsdpig~~wittwg~g---~l~r 258 (353)
T COG4257 192 -YGICATP-------DGSVWYASLAGNAIARIDPFAGHAE-VVPQPNALKAGSRRI-WSDPIGRAWITTWGTG---SLHR 258 (353)
T ss_pred -cceEECC-------CCcEEEEeccccceEEcccccCCcc-eecCCCccccccccc-ccCccCcEEEeccCCc---eeeE
Confidence 2333333 6778876 5889999999999422 122222210 01112 1334566776433333 7899
Q ss_pred EEcCCCceeeeeeeeccC-CcccceEEecCcEEEEE-ECCCCeEEEEEeecCeeeeEEEeec
Q 003792 207 INAMNGELLNHETAAFSG-GFVGDVALVSSDTLVTL-DTTRSILVTVSFKNRKIAFQETHLS 266 (795)
Q Consensus 207 ld~~tG~~~w~~~v~~~~-~~~~~~~~vg~~~lv~~-d~~~~~L~v~~l~sg~~~~~~~~l~ 266 (795)
+|+.+-. |+.- ..|. .-..-.+.|++.-.||+ |.+.+.++..|-++.+ +..+|+.
T Consensus 259 fdPs~~s--W~ey-pLPgs~arpys~rVD~~grVW~sea~agai~rfdpeta~--ftv~p~p 315 (353)
T COG4257 259 FDPSVTS--WIEY-PLPGSKARPYSMRVDRHGRVWLSEADAGAIGRFDPETAR--FTVLPIP 315 (353)
T ss_pred eCccccc--ceee-eCCCCCCCcceeeeccCCcEEeeccccCceeecCcccce--EEEecCC
Confidence 9998765 6431 2232 12223456666656677 7778889999888876 7777764
No 86
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=89.84 E-value=32 Score=37.95 Aligned_cols=232 Identities=15% Similarity=0.202 Sum_probs=115.2
Q ss_pred EEEEEeCCCEEEEEECcCCccceEEEcCCcceeeeeeeeeCCEEEEEEccCCeEEEEeCCCCcEeEEEeccCccccCCce
Q 003792 55 RVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLL 134 (795)
Q Consensus 55 ~v~vat~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~~~~~~~s~~~~ 134 (795)
.+|-+.+++.|-|.|...-+++=.+- +--..+..+...-..++++-++.+..+|.||..+-..+-........+ ....
T Consensus 207 YlFs~gedk~VKCwDLe~nkvIR~Yh-GHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V-~~V~ 284 (460)
T KOG0285|consen 207 YLFSAGEDKQVKCWDLEYNKVIRHYH-GHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPV-ASVM 284 (460)
T ss_pred eEEEecCCCeeEEEechhhhhHHHhc-cccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcc-eeEE
Confidence 48888899999999988766543221 100122233222234566656778899999999888877766554332 1111
Q ss_pred eccccccccCCCeEEEEe-CCEEEEEECCCCcEEEEEeccCcceeeeeEEEEecCCEEEEEEecCCceeEEEEEEcCCCc
Q 003792 135 LVPTNLKVDKDSLILVSS-KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGE 213 (795)
Q Consensus 135 ~~~~~~~~~~~~~V~V~~-~g~l~ald~~tG~~~W~~~~~~~~~~~~~vv~s~~~~~Vyvv~~~g~~~~~v~ald~~tG~ 213 (795)
.- ..+..|+-.+ |+.+..-|...|+..=+........ ..+. ..-....|+.+... .+-+.+.-.|.
T Consensus 285 ~~------~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksv--ral~-lhP~e~~fASas~d----nik~w~~p~g~ 351 (460)
T KOG0285|consen 285 CQ------PTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSV--RALC-LHPKENLFASASPD----NIKQWKLPEGE 351 (460)
T ss_pred ee------cCCCceEEecCCceEEEeeeccCceeEeeeccccee--eEEe-cCCchhhhhccCCc----cceeccCCccc
Confidence 11 1145555554 8888888888887665543332211 1110 00111223221111 34555555555
Q ss_pred eeeeeeeeccCCcccceEEe-cCcEEEEEECCCCeEEEEEeecCeeeeEEEeecccCCCCCCceEEeecCCcceeEEEec
Q 003792 214 LLNHETAAFSGGFVGDVALV-SSDTLVTLDTTRSILVTVSFKNRKIAFQETHLSNLGEDSSGMVEILPSSLTGMFTVKIN 292 (795)
Q Consensus 214 ~~w~~~v~~~~~~~~~~~~v-g~~~lv~~d~~~~~L~v~~l~sg~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~ 292 (795)
.+... +....+- .++-+ .+++++. -.++|.+..-|-++|. .+|.. ++..++++. +- -.|.|.--.+
T Consensus 352 f~~nl--sgh~~ii-ntl~~nsD~v~~~-G~dng~~~fwdwksg~-nyQ~~--~t~vqpGSl--~s----EagI~as~fD 418 (460)
T KOG0285|consen 352 FLQNL--SGHNAII-NTLSVNSDGVLVS-GGDNGSIMFWDWKSGH-NYQRG--QTIVQPGSL--ES----EAGIFASCFD 418 (460)
T ss_pred hhhcc--cccccee-eeeeeccCceEEE-cCCceEEEEEecCcCc-ccccc--cccccCCcc--cc----ccceeEEeec
Confidence 55331 1111111 12222 3344433 3467888888888887 34433 111111110 00 0123333233
Q ss_pred C-cEEEEEEecCCcEEEEEeecC
Q 003792 293 N-YKLFIRLTSEDKLEVVHKVDH 314 (795)
Q Consensus 293 ~-~~~l~~~~~~~~~~v~~~~~~ 314 (795)
. +.-|+.-+.+..+++++.++.
T Consensus 419 ktg~rlit~eadKtIk~~keDe~ 441 (460)
T KOG0285|consen 419 KTGSRLITGEADKTIKMYKEDEH 441 (460)
T ss_pred ccCceEEeccCCcceEEEecccc
Confidence 3 335666664556777776653
No 87
>PHA02713 hypothetical protein; Provisional
Probab=88.99 E-value=31 Score=41.04 Aligned_cols=162 Identities=12% Similarity=0.084 Sum_probs=84.9
Q ss_pred EEEEEECcCCccceEEEcCCcceeee-eeeeeCCEEEEEEccC------CeEEEEeCCCCcEeEEEeccCccccCCceec
Q 003792 64 VIASLDLRHGEIFWRHVLGINDVVDG-IDIALGKYVITLSSDG------STLRAWNLPDGQMVWESFLRGSKHSKPLLLV 136 (795)
Q Consensus 64 ~l~ALn~~tG~ivWR~~l~~~~~i~~-l~~~~g~~~V~Vs~~g------~~v~A~d~~tG~llWe~~~~~~~~s~~~~~~ 136 (795)
.+..+|+.+++ |+..-+-+..... ..+..++.++++||.. ..+..+|+.+.. |+.-..-+.......
T Consensus 273 ~v~~yd~~~~~--W~~l~~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~--W~~~~~m~~~R~~~~-- 346 (557)
T PHA02713 273 CILVYNINTME--YSVISTIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKI--HVELPPMIKNRCRFS-- 346 (557)
T ss_pred CEEEEeCCCCe--EEECCCCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCe--EeeCCCCcchhhcee--
Confidence 46789998874 8875543321111 1134566666666632 347889988774 754321111000111
Q ss_pred cccccccCCCeEEEEe--C-----CEEEEEECCCCcEEEEEeccCcce-eeeeEEEEecCCEEEEEEecCCc--------
Q 003792 137 PTNLKVDKDSLILVSS--K-----GCLHAVSSIDGEILWTRDFAAESV-EVQQVIQLDESDQIYVVGYAGSS-------- 200 (795)
Q Consensus 137 ~~~~~~~~~~~V~V~~--~-----g~l~ald~~tG~~~W~~~~~~~~~-~~~~vv~s~~~~~Vyvv~~~g~~-------- 200 (795)
...-++.+++.+ + ..+.++|+.+. .|+.-.+.+.. ....+ ..-++.+|++|...+.
T Consensus 347 ----~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~--~W~~~~~mp~~r~~~~~--~~~~g~IYviGG~~~~~~~~~~~~ 418 (557)
T PHA02713 347 ----LAVIDDTIYAIGGQNGTNVERTIECYTMGDD--KWKMLPDMPIALSSYGM--CVLDQYIYIIGGRTEHIDYTSVHH 418 (557)
T ss_pred ----EEEECCEEEEECCcCCCCCCceEEEEECCCC--eEEECCCCCcccccccE--EEECCEEEEEeCCCcccccccccc
Confidence 111256777753 2 24788888875 58874443221 01112 2458999998753210
Q ss_pred ------------eeEEEEEEcCCCceeeeeeeeccCCccc-ceEEecCcEEEEE
Q 003792 201 ------------QFHAYQINAMNGELLNHETAAFSGGFVG-DVALVSSDTLVTL 241 (795)
Q Consensus 201 ------------~~~v~ald~~tG~~~w~~~v~~~~~~~~-~~~~vg~~~lv~~ 241 (795)
.-.+.++|+.+. .|+..-..+..... .....++.++++.
T Consensus 419 ~~~~~~~~~~~~~~~ve~YDP~td--~W~~v~~m~~~r~~~~~~~~~~~IYv~G 470 (557)
T PHA02713 419 MNSIDMEEDTHSSNKVIRYDTVNN--IWETLPNFWTGTIRPGVVSHKDDIYVVC 470 (557)
T ss_pred cccccccccccccceEEEECCCCC--eEeecCCCCcccccCcEEEECCEEEEEe
Confidence 125788998876 47764444333333 2333355555544
No 88
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=88.87 E-value=32 Score=35.78 Aligned_cols=151 Identities=14% Similarity=0.198 Sum_probs=81.4
Q ss_pred CCEEEEEeCCCEEEEEECcCCccceEEEcCCcc----eeeeeeeeeCCEEEEEEccC---------CeEEEEeCCCCcEe
Q 003792 53 RKRVVVSTEENVIASLDLRHGEIFWRHVLGIND----VVDGIDIALGKYVITLSSDG---------STLRAWNLPDGQMV 119 (795)
Q Consensus 53 ~~~v~vat~~g~l~ALn~~tG~ivWR~~l~~~~----~i~~l~~~~g~~~V~Vs~~g---------~~v~A~d~~tG~ll 119 (795)
++++|++...+... +|+++|++.--....... ....+ ....++.++++..+ +.++.++.. |+..
T Consensus 51 ~g~l~v~~~~~~~~-~d~~~g~~~~~~~~~~~~~~~~~~ND~-~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~ 127 (246)
T PF08450_consen 51 DGRLYVADSGGIAV-VDPDTGKVTVLADLPDGGVPFNRPNDV-AVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVT 127 (246)
T ss_dssp TSEEEEEETTCEEE-EETTTTEEEEEEEEETTCSCTEEEEEE-EE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEE
T ss_pred CCEEEEEEcCceEE-EecCCCcEEEEeeccCCCcccCCCceE-EEcCCCCEEEEecCCCccccccccceEEECCC-CeEE
Confidence 68899998876544 499999665444442111 11122 13344556665421 468888887 6632
Q ss_pred EEE-eccCccccCCceeccccccccCCCeEEEE--eCCEEEEEECCC-Cc-E----EEEEeccCcceeeeeEEEEecCCE
Q 003792 120 WES-FLRGSKHSKPLLLVPTNLKVDKDSLILVS--SKGCLHAVSSID-GE-I----LWTRDFAAESVEVQQVIQLDESDQ 190 (795)
Q Consensus 120 We~-~~~~~~~s~~~~~~~~~~~~~~~~~V~V~--~~g~l~ald~~t-G~-~----~W~~~~~~~~~~~~~vv~s~~~~~ 190 (795)
.-. .+..+ ..+.+-+ + .+.+++. ..+++++++... |. . .+ ...+...-.|..+. ....+.
T Consensus 128 ~~~~~~~~p---NGi~~s~-----d-g~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~g~pDG~~-vD~~G~ 196 (246)
T PF08450_consen 128 VVADGLGFP---NGIAFSP-----D-GKTLYVADSFNGRIWRFDLDADGGELSNRRVF-IDFPGGPGYPDGLA-VDSDGN 196 (246)
T ss_dssp EEEEEESSE---EEEEEET-----T-SSEEEEEETTTTEEEEEEEETTTCCEEEEEEE-EE-SSSSCEEEEEE-EBTTS-
T ss_pred EEecCcccc---cceEECC-----c-chheeecccccceeEEEeccccccceeeeeeE-EEcCCCCcCCCcce-EcCCCC
Confidence 222 22211 1222222 2 3456665 378899998853 22 1 22 22222221133443 246789
Q ss_pred EEEEEecCCceeEEEEEEcCCCceeeeeeee
Q 003792 191 IYVVGYAGSSQFHAYQINAMNGELLNHETAA 221 (795)
Q Consensus 191 Vyvv~~~g~~~~~v~ald~~tG~~~w~~~v~ 221 (795)
+|+....++ ++..+|+. |+.+.+..+.
T Consensus 197 l~va~~~~~---~I~~~~p~-G~~~~~i~~p 223 (246)
T PF08450_consen 197 LWVADWGGG---RIVVFDPD-GKLLREIELP 223 (246)
T ss_dssp EEEEEETTT---EEEEEETT-SCEEEEEE-S
T ss_pred EEEEEcCCC---EEEEECCC-ccEEEEEcCC
Confidence 998777655 89999987 9998777544
No 89
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=88.38 E-value=16 Score=37.43 Aligned_cols=151 Identities=17% Similarity=0.161 Sum_probs=80.4
Q ss_pred CCEEEEEeC---CCEEEEEECcCCccceEEEcCCcceee-eeeeeeCCEEEEEEccCCeEEEEeCCCCcEeEEEeccCcc
Q 003792 53 RKRVVVSTE---ENVIASLDLRHGEIFWRHVLGINDVVD-GIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSK 128 (795)
Q Consensus 53 ~~~v~vat~---~g~l~ALn~~tG~ivWR~~l~~~~~i~-~l~~~~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~~~~~~ 128 (795)
++.+|..|. ...|...|.++|++.|.+.++.+..+. |. ...++.+..++=..+.-.-+|+.|=+.+=+++..++.
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGi-t~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~GeG 133 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGI-TKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGEG 133 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccce-eeccceEEEEEeccceeEEEChHHhhhhcccccCCcc
Confidence 668888886 468999999999999999998421111 23 1234433333434557788888887777666666554
Q ss_pred ccCCceeccccccccCCCeEEEE-eCCEEEEEECCCCcEEEEEeccCcceeeeeEE--EEecCCEEEEEEecCCceeEEE
Q 003792 129 HSKPLLLVPTNLKVDKDSLILVS-SKGCLHAVSSIDGEILWTRDFAAESVEVQQVI--QLDESDQIYVVGYAGSSQFHAY 205 (795)
Q Consensus 129 ~s~~~~~~~~~~~~~~~~~V~V~-~~g~l~ald~~tG~~~W~~~~~~~~~~~~~vv--~s~~~~~Vyvv~~~g~~~~~v~ 205 (795)
. .+. .+ ++.++.. +...|+-.|++|=...=+........ |-... ..--+|.+|+=-.... ++.
T Consensus 134 W----gLt-----~d-~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~-pv~~LNELE~VdG~lyANVw~t~---~I~ 199 (262)
T COG3823 134 W----GLT-----SD-DKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGV-PVSKLNELEWVDGELYANVWQTT---RIA 199 (262)
T ss_pred e----eee-----cC-CcceEeeCCceEEEecCHHHhhhcceEEEEECCe-ecccccceeeeccEEEEeeeeec---ceE
Confidence 3 111 12 2233332 23345555555433222221111111 00000 0112566665333332 577
Q ss_pred EEEcCCCceeeee
Q 003792 206 QINAMNGELLNHE 218 (795)
Q Consensus 206 ald~~tG~~~w~~ 218 (795)
-+|+++|+++.-.
T Consensus 200 rI~p~sGrV~~wi 212 (262)
T COG3823 200 RIDPDSGRVVAWI 212 (262)
T ss_pred EEcCCCCcEEEEE
Confidence 7888888876444
No 90
>PRK03629 tolB translocation protein TolB; Provisional
Probab=88.35 E-value=53 Score=37.64 Aligned_cols=151 Identities=15% Similarity=0.078 Sum_probs=73.4
Q ss_pred cCCCEEEEEe---CCCEEEEEECcCCccceEEEcCCcceeeeeee-eeCCEEEEEEc-cC-CeEEEEeCCCCcEeEEEec
Q 003792 51 TGRKRVVVST---EENVIASLDLRHGEIFWRHVLGINDVVDGIDI-ALGKYVITLSS-DG-STLRAWNLPDGQMVWESFL 124 (795)
Q Consensus 51 ~~~~~v~vat---~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~-~~g~~~V~Vs~-~g-~~v~A~d~~tG~llWe~~~ 124 (795)
++++++...+ ....|+.+|..+|+..--..++.. ...... ..|+.+++++. .| ..++.||..+|++.=-...
T Consensus 208 PDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~--~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~ 285 (429)
T PRK03629 208 PDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRH--NGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDG 285 (429)
T ss_pred CCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCC--cCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccCC
Confidence 3455555443 245788899988874322222211 111111 24555666543 22 3699999999876421111
Q ss_pred cCccccCCceeccccccccCCCeEEEEe--C--CEEEEEECCCCcEEEEEeccCcceeeeeEEEEecCCEEEEEEecCCc
Q 003792 125 RGSKHSKPLLLVPTNLKVDKDSLILVSS--K--GCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSS 200 (795)
Q Consensus 125 ~~~~~s~~~~~~~~~~~~~~~~~V~V~~--~--g~l~ald~~tG~~~W~~~~~~~~~~~~~vv~s~~~~~Vyvv~~~g~~ 200 (795)
.... ..+...+ + ++.++..+ + -.|+.+|..+|+..--.. ..... .....+.++..+++.+..++
T Consensus 286 -~~~~-~~~~wSP-----D-G~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~-~~~~~--~~~~~SpDG~~Ia~~~~~~g- 353 (429)
T PRK03629 286 -RSNN-TEPTWFP-----D-SQNLAYTSDQAGRPQVYKVNINGGAPQRITW-EGSQN--QDADVSSDGKFMVMVSSNGG- 353 (429)
T ss_pred -CCCc-CceEECC-----C-CCEEEEEeCCCCCceEEEEECCCCCeEEeec-CCCCc--cCEEECCCCCEEEEEEccCC-
Confidence 1111 1222222 2 23343333 2 278889988887542211 11111 11211334555655554432
Q ss_pred eeEEEEEEcCCCcee
Q 003792 201 QFHAYQINAMNGELL 215 (795)
Q Consensus 201 ~~~v~ald~~tG~~~ 215 (795)
...++.+|+.+|+..
T Consensus 354 ~~~I~~~dl~~g~~~ 368 (429)
T PRK03629 354 QQHIAKQDLATGGVQ 368 (429)
T ss_pred CceEEEEECCCCCeE
Confidence 236778899998743
No 91
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=88.26 E-value=15 Score=41.34 Aligned_cols=120 Identities=18% Similarity=0.200 Sum_probs=73.5
Q ss_pred EEEEEEccCCeEEEEeCCCCcEeEEEeccCccccCCceeccccccccCCCeEEEE--eCCEEEEEECC---CCcEEEEEe
Q 003792 97 YVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVS--SKGCLHAVSSI---DGEILWTRD 171 (795)
Q Consensus 97 ~~V~Vs~~g~~v~A~d~~tG~llWe~~~~~~~~s~~~~~~~~~~~~~~~~~V~V~--~~g~l~ald~~---tG~~~W~~~ 171 (795)
++++=++-+.+|..||.++|+..=.....+... +.+..-+ . ...+++. .++++...|.. .-...|++.
T Consensus 257 nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~V-q~l~wh~-----~-~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~ 329 (463)
T KOG0270|consen 257 NVLASGSADKTVKLWDVDTGKPKSSITHHGKKV-QTLEWHP-----Y-EPSVLLSGSYDGTVALKDCRDPSNSGKEWKFD 329 (463)
T ss_pred eeEEecCCCceEEEEEcCCCCcceehhhcCCce-eEEEecC-----C-CceEEEeccccceEEeeeccCccccCceEEec
Confidence 344423447899999999999988877665544 3333333 1 2344443 38999988887 444678876
Q ss_pred ccCcceeeeeEEEEecCCEEEEEEecCCceeEEEEEEcC-CCceeeeeeeeccCCcccceEE
Q 003792 172 FAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAM-NGELLNHETAAFSGGFVGDVAL 232 (795)
Q Consensus 172 ~~~~~~~~~~vv~s~~~~~Vyvv~~~g~~~~~v~ald~~-tG~~~w~~~v~~~~~~~~~~~~ 232 (795)
..-. ++..-......|+++.+.| .|+-+|++ .|+++|+....- .++++-++.
T Consensus 330 g~VE-----kv~w~~~se~~f~~~tddG---~v~~~D~R~~~~~vwt~~AHd-~~ISgl~~n 382 (463)
T KOG0270|consen 330 GEVE-----KVAWDPHSENSFFVSTDDG---TVYYFDIRNPGKPVWTLKAHD-DEISGLSVN 382 (463)
T ss_pred cceE-----EEEecCCCceeEEEecCCc---eEEeeecCCCCCceeEEEecc-CCcceEEec
Confidence 5432 2221123444555565544 78888887 579999986433 355553433
No 92
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=88.10 E-value=34 Score=39.60 Aligned_cols=156 Identities=15% Similarity=0.186 Sum_probs=87.5
Q ss_pred CCEEEEEeCCCEEEEEECcCCccceEEEcCCcceeeeeeeeeCCEEEEEEccCCeEEEEeCCCCcEe--EEEeccCcccc
Q 003792 53 RKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMV--WESFLRGSKHS 130 (795)
Q Consensus 53 ~~~v~vat~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~tG~ll--We~~~~~~~~s 130 (795)
++.++-++.++.+..-|.++|+.+=....... .+.++.....+..+..++.++.++.||..+|..+ =+.......
T Consensus 258 g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~-~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~-- 334 (456)
T KOG0266|consen 258 GNLLVSGSDDGTVRIWDVRTGECVRKLKGHSD-GISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENS-- 334 (456)
T ss_pred CCEEEEecCCCcEEEEeccCCeEEEeeeccCC-ceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCC--
Confidence 56788899999999999999887655444333 3444422233334444555789999999999954 111111100
Q ss_pred CCceeccccccccCCCeEEEEe-CCEEEEEECCCCcEEEEEeccCcc-eeeeeEEEEecCCEEEEEEecCCceeEEEEEE
Q 003792 131 KPLLLVPTNLKVDKDSLILVSS-KGCLHAVSSIDGEILWTRDFAAES-VEVQQVIQLDESDQIYVVGYAGSSQFHAYQIN 208 (795)
Q Consensus 131 ~~~~~~~~~~~~~~~~~V~V~~-~g~l~ald~~tG~~~W~~~~~~~~-~~~~~vv~s~~~~~Vyvv~~~g~~~~~v~ald 208 (795)
+....+- ...+ .+.+++.. ++.+...|..+|+..=++...... ........ ..++...+.+...+ .++..|
T Consensus 335 ~~~~~~~--fsp~-~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~sg~~d~---~v~~~~ 407 (456)
T KOG0266|consen 335 APVTSVQ--FSPN-GKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTL-STGGKLIYSGSEDG---SVYVWD 407 (456)
T ss_pred CceeEEE--ECCC-CcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccc-cCCCCeEEEEeCCc---eEEEEe
Confidence 0011110 0112 34455544 668888888888766555443322 12223332 23344333343332 789999
Q ss_pred cCCCceeeee
Q 003792 209 AMNGELLNHE 218 (795)
Q Consensus 209 ~~tG~~~w~~ 218 (795)
..+|..+-..
T Consensus 408 ~~s~~~~~~l 417 (456)
T KOG0266|consen 408 SSSGGILQRL 417 (456)
T ss_pred CCccchhhhh
Confidence 9998877555
No 93
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=88.07 E-value=5.5 Score=42.83 Aligned_cols=185 Identities=18% Similarity=0.218 Sum_probs=101.1
Q ss_pred CCCEEEEEECcCCcc-ceEEEcCCc---------ceeeeeeeeeCCEEEEEEccCCeEEEEeCCCCcEeEEEeccCcccc
Q 003792 61 EENVIASLDLRHGEI-FWRHVLGIN---------DVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHS 130 (795)
Q Consensus 61 ~~g~l~ALn~~tG~i-vWR~~l~~~---------~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~~~~~~~s 130 (795)
.+....|--+.||++ +||...+.- ..+..++...++..+.-++.+..+|.--..+|+.+=|++..+.-.
T Consensus 273 RDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyv- 351 (508)
T KOG0275|consen 273 RDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYV- 351 (508)
T ss_pred ccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccc-
Confidence 334444444556665 577655421 123334333333344334567889999999999999998876543
Q ss_pred CCceeccccccccCCCeEEEE-eCCEEEEEECCCCcEEEEEeccCcceeeeeEEEEecCCEEEEEEecCCceeEEEEEEc
Q 003792 131 KPLLLVPTNLKVDKDSLILVS-SKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINA 209 (795)
Q Consensus 131 ~~~~~~~~~~~~~~~~~V~V~-~~g~l~ald~~tG~~~W~~~~~~~~~~~~~vv~s~~~~~Vyvv~~~g~~~~~v~ald~ 209 (795)
..+.+. .+ +..++-. +||.+..-+.++++-+=+++..........++....+-.-++++.-.+ .++.++.
T Consensus 352 n~a~ft-----~d-G~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsn---tv~imn~ 422 (508)
T KOG0275|consen 352 NEATFT-----DD-GHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSN---TVYIMNM 422 (508)
T ss_pred cceEEc-----CC-CCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCC---eEEEEec
Confidence 232222 22 3344444 699999999999988888776654432223322222223333343322 4455553
Q ss_pred CCCceeeeeeeec--cCCcccceEEecCcEEEEEECCCCeEEEEEeecCe
Q 003792 210 MNGELLNHETAAF--SGGFVGDVALVSSDTLVTLDTTRSILVTVSFKNRK 257 (795)
Q Consensus 210 ~tG~~~w~~~v~~--~~~~~~~~~~vg~~~lv~~d~~~~~L~v~~l~sg~ 257 (795)
.|+++...+-.- ..++-..++-.-+..++|+- ..+.|+.....+|+
T Consensus 423 -qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcig-ED~vlYCF~~~sG~ 470 (508)
T KOG0275|consen 423 -QGQVVRSFSSGKREGGDFINAILSPKGEWIYCIG-EDGVLYCFSVLSGK 470 (508)
T ss_pred -cceEEeeeccCCccCCceEEEEecCCCcEEEEEc-cCcEEEEEEeecCc
Confidence 466655442111 11221222223445667775 45788888888887
No 94
>PRK04922 tolB translocation protein TolB; Provisional
Probab=88.00 E-value=55 Score=37.45 Aligned_cols=151 Identities=15% Similarity=0.110 Sum_probs=75.1
Q ss_pred cCCCEEEEEeC---CCEEEEEECcCCccceEEEcCCcceeeeeee-eeCCEEEEEEc-cC-CeEEEEeCCCCcEeEEEec
Q 003792 51 TGRKRVVVSTE---ENVIASLDLRHGEIFWRHVLGINDVVDGIDI-ALGKYVITLSS-DG-STLRAWNLPDGQMVWESFL 124 (795)
Q Consensus 51 ~~~~~v~vat~---~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~-~~g~~~V~Vs~-~g-~~v~A~d~~tG~llWe~~~ 124 (795)
++++.|+..+. ...|+.+|.++|+..--..+ ++....... ..|+.+++... +| ..++.||..+|+.. +...
T Consensus 213 pDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~--~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~ 289 (433)
T PRK04922 213 PDGKKLAYVSFERGRSAIYVQDLATGQRELVASF--RGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT-RLTN 289 (433)
T ss_pred CCCCEEEEEecCCCCcEEEEEECCCCCEEEeccC--CCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeE-ECcc
Confidence 34556666653 34799999998875322112 211111111 23555555433 22 47999999998753 2111
Q ss_pred cCccccCCceeccccccccCCCeEEEEe--C--CEEEEEECCCCcEEEEEeccCcceeeeeEEEEecCCEEEEEEecCCc
Q 003792 125 RGSKHSKPLLLVPTNLKVDKDSLILVSS--K--GCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSS 200 (795)
Q Consensus 125 ~~~~~s~~~~~~~~~~~~~~~~~V~V~~--~--g~l~ald~~tG~~~W~~~~~~~~~~~~~vv~s~~~~~Vyvv~~~g~~ 200 (795)
..... ..+...+ + ++.+++.+ + ..++.+|..+|+..--........ .+..+..+..+++.+..+ .
T Consensus 290 ~~~~~-~~~~~sp-----D-G~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~---~~~~SpDG~~Ia~~~~~~-~ 358 (433)
T PRK04922 290 HFGID-TEPTWAP-----D-GKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNA---RASVSPDGKKIAMVHGSG-G 358 (433)
T ss_pred CCCCc-cceEECC-----C-CCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCcc---CEEECCCCCEEEEEECCC-C
Confidence 11111 1122222 2 23344433 2 358899988887543221111111 122234566666654433 2
Q ss_pred eeEEEEEEcCCCcee
Q 003792 201 QFHAYQINAMNGELL 215 (795)
Q Consensus 201 ~~~v~ald~~tG~~~ 215 (795)
...+..+|+.+|+..
T Consensus 359 ~~~I~v~d~~~g~~~ 373 (433)
T PRK04922 359 QYRIAVMDLSTGSVR 373 (433)
T ss_pred ceeEEEEECCCCCeE
Confidence 346788899888765
No 95
>PRK04792 tolB translocation protein TolB; Provisional
Probab=87.95 E-value=58 Score=37.61 Aligned_cols=149 Identities=11% Similarity=0.113 Sum_probs=74.4
Q ss_pred cCCCEEEEEe-CC--CEEEEEECcCCccceEEEcCCcceeeeeee-eeCCEEEEEEccC--CeEEEEeCCCCcEeEEEec
Q 003792 51 TGRKRVVVST-EE--NVIASLDLRHGEIFWRHVLGINDVVDGIDI-ALGKYVITLSSDG--STLRAWNLPDGQMVWESFL 124 (795)
Q Consensus 51 ~~~~~v~vat-~~--g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~-~~g~~~V~Vs~~g--~~v~A~d~~tG~llWe~~~ 124 (795)
+++++|+..+ ++ ..|+.+|..+|+.. +....++....... ..|+.+++.+..+ ..++.+|..+|++. .+
T Consensus 227 PDG~~La~~s~~~g~~~L~~~dl~tg~~~--~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~---~l 301 (448)
T PRK04792 227 PDGRKLAYVSFENRKAEIFVQDIYTQVRE--KVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALT---RI 301 (448)
T ss_pred CCCCEEEEEEecCCCcEEEEEECCCCCeE--EecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeE---EC
Confidence 3455555544 33 47999999998752 22211211111111 2455566654433 35999999988742 22
Q ss_pred cCcc-ccCCceeccccccccCCCeEEEEe----CCEEEEEECCCCcEEEEEeccCcceeeeeEEEEecCCEEEEEEecCC
Q 003792 125 RGSK-HSKPLLLVPTNLKVDKDSLILVSS----KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGS 199 (795)
Q Consensus 125 ~~~~-~s~~~~~~~~~~~~~~~~~V~V~~----~g~l~ald~~tG~~~W~~~~~~~~~~~~~vv~s~~~~~Vyvv~~~g~ 199 (795)
.... ....+... .+ ++.+++.+ ...++.+|..+|+..--. ...... .....+.+++.+++.+..+
T Consensus 302 t~~~~~~~~p~wS-----pD-G~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt-~~g~~~--~~~~~SpDG~~l~~~~~~~- 371 (448)
T PRK04792 302 TRHRAIDTEPSWH-----PD-GKSLIFTSERGGKPQIYRVNLASGKVSRLT-FEGEQN--LGGSITPDGRSMIMVNRTN- 371 (448)
T ss_pred ccCCCCccceEEC-----CC-CCEEEEEECCCCCceEEEEECCCCCEEEEe-cCCCCC--cCeeECCCCCEEEEEEecC-
Confidence 2111 10111122 22 23343332 347999999888754211 111111 1111134566676655443
Q ss_pred ceeEEEEEEcCCCce
Q 003792 200 SQFHAYQINAMNGEL 214 (795)
Q Consensus 200 ~~~~v~ald~~tG~~ 214 (795)
....++.+|+.+|+.
T Consensus 372 g~~~I~~~dl~~g~~ 386 (448)
T PRK04792 372 GKFNIARQDLETGAM 386 (448)
T ss_pred CceEEEEEECCCCCe
Confidence 235788899999875
No 96
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=87.37 E-value=41 Score=35.31 Aligned_cols=107 Identities=9% Similarity=0.130 Sum_probs=64.4
Q ss_pred EEEEeCCCEEEEEE------CcCCccceEEEcCCcc------eeeeeeeeeCCEEEEEEccCCeEEEEeCCCCcEeEEEe
Q 003792 56 VVVSTEENVIASLD------LRHGEIFWRHVLGIND------VVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESF 123 (795)
Q Consensus 56 v~vat~~g~l~ALn------~~tG~ivWR~~l~~~~------~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~ 123 (795)
++.+. +|.|++.- ..-=+.+|+...+... .|..+.+.-.++-++..+.++.++.||.+||+.--+++
T Consensus 75 Lls~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~r 153 (325)
T KOG0649|consen 75 LLSGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYR 153 (325)
T ss_pred eeecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEc
Confidence 44443 48888873 1234668887665441 12333222234444444456799999999999999998
Q ss_pred ccCccccCCceeccccccccCCCeEEEE-eCCEEEEEECCCCcEEEEE
Q 003792 124 LRGSKHSKPLLLVPTNLKVDKDSLILVS-SKGCLHAVSSIDGEILWTR 170 (795)
Q Consensus 124 ~~~~~~s~~~~~~~~~~~~~~~~~V~V~-~~g~l~ald~~tG~~~W~~ 170 (795)
..+..+ - .++. -...+.|+-. .||.++.-|.++|+-+=..
T Consensus 154 GHtDYv-H--~vv~----R~~~~qilsG~EDGtvRvWd~kt~k~v~~i 194 (325)
T KOG0649|consen 154 GHTDYV-H--SVVG----RNANGQILSGAEDGTVRVWDTKTQKHVSMI 194 (325)
T ss_pred CCccee-e--eeee----cccCcceeecCCCccEEEEeccccceeEEe
Confidence 876543 1 1221 1123455555 3888988898888865443
No 97
>PHA02790 Kelch-like protein; Provisional
Probab=87.35 E-value=19 Score=41.99 Aligned_cols=146 Identities=5% Similarity=-0.048 Sum_probs=77.0
Q ss_pred CCEEEEEeCC---CEEEEEECcCCccceEEEcCCcceeeeee-eeeCCEEEEEEccC---CeEEEEeCCCCcEeEEEecc
Q 003792 53 RKRVVVSTEE---NVIASLDLRHGEIFWRHVLGINDVVDGID-IALGKYVITLSSDG---STLRAWNLPDGQMVWESFLR 125 (795)
Q Consensus 53 ~~~v~vat~~---g~l~ALn~~tG~ivWR~~l~~~~~i~~l~-~~~g~~~V~Vs~~g---~~v~A~d~~tG~llWe~~~~ 125 (795)
++.||+.... +.+...|+.++ .|+..-+-+....... +..++.+.++||.. ..+..||+.++ .|+....
T Consensus 318 ~~~iYviGG~~~~~sve~ydp~~n--~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~--~W~~~~~ 393 (480)
T PHA02790 318 NNKLYVVGGLPNPTSVERWFHGDA--AWVNMPSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHD--QWQFGPS 393 (480)
T ss_pred CCEEEEECCcCCCCceEEEECCCC--eEEECCCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCC--EEEeCCC
Confidence 6778877653 34667777665 4876443332111111 23455555556532 34778898765 6886422
Q ss_pred CccccCCceeccccccccCCCeEEEEeCCEEEEEECCCCcEEEEEeccCcc-eeeeeEEEEecCCEEEEEEecC-C-cee
Q 003792 126 GSKHSKPLLLVPTNLKVDKDSLILVSSKGCLHAVSSIDGEILWTRDFAAES-VEVQQVIQLDESDQIYVVGYAG-S-SQF 202 (795)
Q Consensus 126 ~~~~s~~~~~~~~~~~~~~~~~V~V~~~g~l~ald~~tG~~~W~~~~~~~~-~~~~~vv~s~~~~~Vyvv~~~g-~-~~~ 202 (795)
-+.-..... ...-++.++|.+ |...++|..++ .|+.-.+.+. .....+ +.-++.+|++|... + ..-
T Consensus 394 m~~~r~~~~------~~~~~~~IYv~G-G~~e~ydp~~~--~W~~~~~m~~~r~~~~~--~v~~~~IYviGG~~~~~~~~ 462 (480)
T PHA02790 394 TYYPHYKSC------ALVFGRRLFLVG-RNAEFYCESSN--TWTLIDDPIYPRDNPEL--IIVDNKLLLIGGFYRGSYID 462 (480)
T ss_pred CCCccccce------EEEECCEEEEEC-CceEEecCCCC--cEeEcCCCCCCccccEE--EEECCEEEEECCcCCCcccc
Confidence 111000111 111256677754 45677888765 7986443321 101112 34688999987532 1 112
Q ss_pred EEEEEEcCCCc
Q 003792 203 HAYQINAMNGE 213 (795)
Q Consensus 203 ~v~ald~~tG~ 213 (795)
.+.++|+.+++
T Consensus 463 ~ve~Yd~~~~~ 473 (480)
T PHA02790 463 TIEVYNNRTYS 473 (480)
T ss_pred eEEEEECCCCe
Confidence 46677877654
No 98
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=86.92 E-value=13 Score=41.27 Aligned_cols=72 Identities=15% Similarity=0.230 Sum_probs=51.1
Q ss_pred CCCEEEEEeCCCEEEEEECcCCccceEEEcCCcceeeeeeeee-CCEEEEEEccCCeEEEEeCCCCcEeEEEeccC
Q 003792 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIAL-GKYVITLSSDGSTLRAWNLPDGQMVWESFLRG 126 (795)
Q Consensus 52 ~~~~v~vat~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~-g~~~V~Vs~~g~~v~A~d~~tG~llWe~~~~~ 126 (795)
+.+.++.++.+|+|.--|..||+.+=+.. -++-+....... |..+++ +..+.+||.||+.+|+++||.....
T Consensus 143 A~NVLlsag~Dn~v~iWnv~tgeali~l~--hpd~i~S~sfn~dGs~l~T-tckDKkvRv~dpr~~~~v~e~~~he 215 (472)
T KOG0303|consen 143 APNVLLSAGSDNTVSIWNVGTGEALITLD--HPDMVYSMSFNRDGSLLCT-TCKDKKVRVIDPRRGTVVSEGVAHE 215 (472)
T ss_pred chhhHhhccCCceEEEEeccCCceeeecC--CCCeEEEEEeccCCceeee-ecccceeEEEcCCCCcEeeeccccc
Confidence 36668888899999999999999887744 444344332222 333334 3446799999999999999985443
No 99
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=86.28 E-value=39 Score=41.39 Aligned_cols=186 Identities=15% Similarity=0.111 Sum_probs=108.3
Q ss_pred CCCEEEEEeCCCEEEEEECcCCc---cceEEEcCCcceeeeeeeeeCCEEEEEEccCCeEEEEeCCCCcEeEEEeccCcc
Q 003792 52 GRKRVVVSTEENVIASLDLRHGE---IFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSK 128 (795)
Q Consensus 52 ~~~~v~vat~~g~l~ALn~~tG~---ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~~~~~~ 128 (795)
..+++.++|++|.|.+..-.+|+ ++=|+.++-. .+.+..++..+..++++-.|-.++..|+...-..+...+.
T Consensus 65 ~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r----~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~ap 140 (933)
T KOG1274|consen 65 YSNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIR----DLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAP 140 (933)
T ss_pred cccceEEeeccceEEEeeCCCCCccceeeeeeccce----EEEEecCCcEEEeecCceeEEEEeccccchheeecccCCc
Confidence 35678999999999888766654 5566655433 2322333445555777788999999999888777665443
Q ss_pred ccCCceeccccccccCCCeEEEE-eCCEEEEEECCCCcEEEEEeccCcce--e----eeeEEEEecCCEEEEEEecCCce
Q 003792 129 HSKPLLLVPTNLKVDKDSLILVS-SKGCLHAVSSIDGEILWTRDFAAESV--E----VQQVIQLDESDQIYVVGYAGSSQ 201 (795)
Q Consensus 129 ~s~~~~~~~~~~~~~~~~~V~V~-~~g~l~ald~~tG~~~W~~~~~~~~~--~----~~~vv~s~~~~~Vyvv~~~g~~~ 201 (795)
. ..+.+-| . +..+.+. .+|.|+..|..+|...-++..-.+.. . .-++.....++..-+.+.++
T Consensus 141 V-l~l~~~p-----~-~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~--- 210 (933)
T KOG1274|consen 141 V-LQLSYDP-----K-GNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDN--- 210 (933)
T ss_pred e-eeeeEcC-----C-CCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCC---
Confidence 3 1121211 1 2334444 49999999999998775544332221 1 11122234567777777776
Q ss_pred eEEEEEEcCCCceeeeeeeeccC-CcccceEEe-cCcEEEEEECCCCeEEEEEee
Q 003792 202 FHAYQINAMNGELLNHETAAFSG-GFVGDVALV-SSDTLVTLDTTRSILVTVSFK 254 (795)
Q Consensus 202 ~~v~ald~~tG~~~w~~~v~~~~-~~~~~~~~v-g~~~lv~~d~~~~~L~v~~l~ 254 (795)
.|..++..+++.....+-...+ .++- +-+- .+.++++.+ -+|.+.+-|.+
T Consensus 211 -~Vkvy~r~~we~~f~Lr~~~~ss~~~~-~~wsPnG~YiAAs~-~~g~I~vWnv~ 262 (933)
T KOG1274|consen 211 -TVKVYSRKGWELQFKLRDKLSSSKFSD-LQWSPNGKYIAAST-LDGQILVWNVD 262 (933)
T ss_pred -eEEEEccCCceeheeecccccccceEE-EEEcCCCcEEeeec-cCCcEEEEecc
Confidence 6888898888877666432211 1111 1111 334554444 34566555555
No 100
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=85.42 E-value=21 Score=41.48 Aligned_cols=105 Identities=14% Similarity=0.130 Sum_probs=63.7
Q ss_pred CeEEEE--eCCEEEEEECCCCcEEEEEeccCcceeeeeEEEEecCCEEEEEEecCCceeEEEEEEcCCCceeeeeeeecc
Q 003792 146 SLILVS--SKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAFS 223 (795)
Q Consensus 146 ~~V~V~--~~g~l~ald~~tG~~~W~~~~~~~~~~~~~vv~s~~~~~Vyvv~~~g~~~~~v~ald~~tG~~~w~~~v~~~ 223 (795)
-.++|+ ..|.+..++...|++.|+.......-..-.+......+-+|-++.+ .++.-++.++++.+-......+
T Consensus 70 t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad----~~v~~~~~~~~~~~~~~~~~~~ 145 (541)
T KOG4547|consen 70 TSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGAD----LKVVYILEKEKVIIRIWKEQKP 145 (541)
T ss_pred ceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCc----eeEEEEecccceeeeeeccCCC
Confidence 345665 3899999999999999999754322101011112233445544433 3788899999998755543322
Q ss_pred CCcccceEEecCcEEEEEECCCCeEEEEEeecCee
Q 003792 224 GGFVGDVALVSSDTLVTLDTTRSILVTVSFKNRKI 258 (795)
Q Consensus 224 ~~~~~~~~~vg~~~lv~~d~~~~~L~v~~l~sg~~ 258 (795)
..+.-|+...+++++.+ .+++.+.+++++++
T Consensus 146 -~~~sl~is~D~~~l~~a---s~~ik~~~~~~kev 176 (541)
T KOG4547|consen 146 -LVSSLCISPDGKILLTA---SRQIKVLDIETKEV 176 (541)
T ss_pred -ccceEEEcCCCCEEEec---cceEEEEEccCceE
Confidence 22333444344455444 46899999999883
No 101
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=85.25 E-value=64 Score=35.50 Aligned_cols=161 Identities=8% Similarity=0.056 Sum_probs=84.3
Q ss_pred CCEEEEEeCC--CEEEEEECcCCccceEEEcCCcc-e-ee-eeeeeeCCEEEEEEccC-----------CeEEEEeCCCC
Q 003792 53 RKRVVVSTEE--NVIASLDLRHGEIFWRHVLGIND-V-VD-GIDIALGKYVITLSSDG-----------STLRAWNLPDG 116 (795)
Q Consensus 53 ~~~v~vat~~--g~l~ALn~~tG~ivWR~~l~~~~-~-i~-~l~~~~g~~~V~Vs~~g-----------~~v~A~d~~tG 116 (795)
+++||+.... +.+..+|.++.+-.|+...+.+. . .. ++ +..++.+++++|.+ ..+..||+.+.
T Consensus 17 ~~~vyv~GG~~~~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~-~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~ 95 (346)
T TIGR03547 17 GDKVYVGLGSAGTSWYKLDLKKPSKGWQKIADFPGGPRNQAVA-AAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKN 95 (346)
T ss_pred CCEEEEEccccCCeeEEEECCCCCCCceECCCCCCCCcccceE-EEECCEEEEEeCCCCCCCCCcceecccEEEEECCCC
Confidence 6778886553 57888998766778998554331 1 11 22 34566666667642 24667787654
Q ss_pred cEeEEEeccC-ccccCCceeccccccccCCCeEEEEe--C---------------------------------------C
Q 003792 117 QMVWESFLRG-SKHSKPLLLVPTNLKVDKDSLILVSS--K---------------------------------------G 154 (795)
Q Consensus 117 ~llWe~~~~~-~~~s~~~~~~~~~~~~~~~~~V~V~~--~---------------------------------------g 154 (795)
.|+.-... +........ ....++.|++.+ + .
T Consensus 96 --~W~~~~~~~p~~~~~~~~-----~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (346)
T TIGR03547 96 --SWQKLDTRSPVGLLGASG-----FSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNK 168 (346)
T ss_pred --EEecCCCCCCCcccceeE-----EEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccc
Confidence 47764321 111000000 101256677753 1 3
Q ss_pred EEEEEECCCCcEEEEEeccCcceeeeeEEEEecCCEEEEEEecCCc---eeEEEEEEcCCCceeeeeeeecc
Q 003792 155 CLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSS---QFHAYQINAMNGELLNHETAAFS 223 (795)
Q Consensus 155 ~l~ald~~tG~~~W~~~~~~~~~~~~~vv~s~~~~~Vyvv~~~g~~---~~~v~ald~~tG~~~w~~~v~~~ 223 (795)
.+..+|..+. .|+.-.+.+...........-++.+|+++-.... ...+..+|.......|+..-..+
T Consensus 169 ~v~~YDp~t~--~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~ 238 (346)
T TIGR03547 169 NVLSYDPSTN--QWRNLGENPFLGTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLP 238 (346)
T ss_pred eEEEEECCCC--ceeECccCCCCcCCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCCC
Confidence 5777787664 5876443331100111112457899998753211 12345566656667787654443
No 102
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=84.65 E-value=69 Score=35.36 Aligned_cols=205 Identities=11% Similarity=0.173 Sum_probs=106.7
Q ss_pred eeeeeeccCCCEEEEEeCC---CEE--EEEECcCCccce--EEEcCCcceeeeeeeeeCCEEEEEEcc-CCeEEEEeCCC
Q 003792 44 AVFHTQKTGRKRVVVSTEE---NVI--ASLDLRHGEIFW--RHVLGINDVVDGIDIALGKYVITLSSD-GSTLRAWNLPD 115 (795)
Q Consensus 44 ~~f~~~~~~~~~v~vat~~---g~l--~ALn~~tG~ivW--R~~l~~~~~i~~l~~~~g~~~V~Vs~~-g~~v~A~d~~t 115 (795)
+.|-.-...++.+|++-+. |.+ +++|+++|++-- |+.++.... ..+.+...+..|+++.. .+.|+.+-..+
T Consensus 42 ptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p-~yvsvd~~g~~vf~AnY~~g~v~v~p~~~ 120 (346)
T COG2706 42 PTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPP-CYVSVDEDGRFVFVANYHSGSVSVYPLQA 120 (346)
T ss_pred CceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCC-eEEEECCCCCEEEEEEccCceEEEEEccc
Confidence 3344334457789998765 444 556777786533 333332211 11212234456776653 57888888854
Q ss_pred -CcEeEEE-ecc--Ccc---ccCCce-eccccccccCCCeEEEE--eCCEEEEEECCCCcEEEEE--eccCcceeeeeEE
Q 003792 116 -GQMVWES-FLR--GSK---HSKPLL-LVPTNLKVDKDSLILVS--SKGCLHAVSSIDGEILWTR--DFAAESVEVQQVI 183 (795)
Q Consensus 116 -G~llWe~-~~~--~~~---~s~~~~-~~~~~~~~~~~~~V~V~--~~g~l~ald~~tG~~~W~~--~~~~~~~~~~~vv 183 (795)
|. +|.. ... .+. ..+..+ .-.+...++ .+.|++- +-.+++.++.++|+..=.. ..+ +..-|+.++
T Consensus 121 dG~-l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~-~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~-~G~GPRHi~ 197 (346)
T COG2706 121 DGS-LQPVVQVVKHTGSGPHERQESPHVHSANFTPD-GRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVK-PGAGPRHIV 197 (346)
T ss_pred CCc-cccceeeeecCCCCCCccccCCccceeeeCCC-CCEEEEeecCCceEEEEEcccCccccccccccC-CCCCcceEE
Confidence 55 4443 211 111 000000 111111222 3456663 4678889998899854322 222 112255565
Q ss_pred EEecCCEEEEEEecCCceeEEEEEEcCCCceeeeeee-eccCCccc----ceEEe--cCcEEEEEECCCCeEEEEEe
Q 003792 184 QLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETA-AFSGGFVG----DVALV--SSDTLVTLDTTRSILVTVSF 253 (795)
Q Consensus 184 ~s~~~~~Vyvv~~~g~~~~~v~ald~~tG~~~w~~~v-~~~~~~~~----~~~~v--g~~~lv~~d~~~~~L~v~~l 253 (795)
....+...|+++-- ++.+.++.+|...|+..--+.+ .+|.++.+ +-+.+ .+.++++.+....++.+.-+
T Consensus 198 FHpn~k~aY~v~EL-~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V 273 (346)
T COG2706 198 FHPNGKYAYLVNEL-NSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSV 273 (346)
T ss_pred EcCCCcEEEEEecc-CCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEE
Confidence 44556667877643 3456777788777777654444 45666655 22222 45677778776665544433
No 103
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=84.00 E-value=49 Score=35.63 Aligned_cols=154 Identities=12% Similarity=0.117 Sum_probs=97.4
Q ss_pred CCCEEEEEeCCCEEEEEECcCCccceEEEcCCcceeeeeeeeeCCEEEEEE-ccCCeEEEEeCCCCcEeEEEeccCcccc
Q 003792 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLS-SDGSTLRAWNLPDGQMVWESFLRGSKHS 130 (795)
Q Consensus 52 ~~~~v~vat~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs-~~g~~v~A~d~~tG~llWe~~~~~~~~s 130 (795)
+++.|+++|.+..-+--|.++|+..=.+.=-. +.+-++.+.-.+.-.||+ +.++..+.||...|.-.=.+.......
T Consensus 155 dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~-gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDI- 232 (343)
T KOG0286|consen 155 DDNHILTGSGDMTCALWDIETGQQTQVFHGHT-GDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDI- 232 (343)
T ss_pred CCCceEecCCCceEEEEEcccceEEEEecCCc-ccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeeccccccc-
Confidence 37789999999999999999998754433211 223333222223334444 457899999999998777777665444
Q ss_pred CCceeccccccccCCCeEEEE--eCCEEEEEECCCCcEEEEEeccCcceeeeeEEEEecCCEEEEEEecCCceeEEEEEE
Q 003792 131 KPLLLVPTNLKVDKDSLILVS--SKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQIN 208 (795)
Q Consensus 131 ~~~~~~~~~~~~~~~~~V~V~--~~g~l~ald~~tG~~~W~~~~~~~~~~~~~vv~s~~~~~Vyvv~~~g~~~~~v~ald 208 (795)
.+..+.| +++-|+. .++.-..+|...++.+=.|..+....-...+-.+.++..+|+ ++.. ......|
T Consensus 233 Nsv~ffP-------~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfa-gy~d---~~c~vWD 301 (343)
T KOG0286|consen 233 NSVRFFP-------SGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFA-GYDD---FTCNVWD 301 (343)
T ss_pred ceEEEcc-------CCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEe-eecC---CceeEee
Confidence 3444544 5666775 388899999999988888775443321222322344555554 5443 2677788
Q ss_pred cCCCceeeee
Q 003792 209 AMNGELLNHE 218 (795)
Q Consensus 209 ~~tG~~~w~~ 218 (795)
...|+.+-..
T Consensus 302 tlk~e~vg~L 311 (343)
T KOG0286|consen 302 TLKGERVGVL 311 (343)
T ss_pred ccccceEEEe
Confidence 7777765433
No 104
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=83.63 E-value=47 Score=35.56 Aligned_cols=72 Identities=17% Similarity=0.171 Sum_probs=43.1
Q ss_pred CCCEEEEEeCCCEEEEEECcCCccceEEEcCCcceeeeeeeeeC-CEEEEEE-ccCCeEEEEeCCCCcEeEEEe
Q 003792 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALG-KYVITLS-SDGSTLRAWNLPDGQMVWESF 123 (795)
Q Consensus 52 ~~~~v~vat~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g-~~~V~Vs-~~g~~v~A~d~~tG~llWe~~ 123 (795)
+...|+.++.+..+--.|...+...=++.-.+.+=+..++..-. ...++++ +.+++|+.||..+=++.=.+.
T Consensus 116 dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~ 189 (315)
T KOG0279|consen 116 DNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFI 189 (315)
T ss_pred CCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccc
Confidence 45568899999998888876554443333321222333332222 2455554 457899999998766653333
No 105
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=83.58 E-value=20 Score=40.75 Aligned_cols=113 Identities=17% Similarity=0.252 Sum_probs=71.1
Q ss_pred EEEEEeCCCEEEEEECcCCccceEEEcCCcceeeeeeeeeCCEEEEEEccCCeEEEEeCCCCcEeEEEec--cCccccCC
Q 003792 55 RVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFL--RGSKHSKP 132 (795)
Q Consensus 55 ~v~vat~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~~--~~~~~s~~ 132 (795)
.++.++-+|.|--.|.++-. -|-..+.-+.++... .....+-.+++..|..|+.||..+|..+=-... ..... .
T Consensus 168 ivvtGsYDg~vrl~DtR~~~-~~v~elnhg~pVe~v-l~lpsgs~iasAgGn~vkVWDl~~G~qll~~~~~H~KtVT--c 243 (487)
T KOG0310|consen 168 IVVTGSYDGKVRLWDTRSLT-SRVVELNHGCPVESV-LALPSGSLIASAGGNSVKVWDLTTGGQLLTSMFNHNKTVT--C 243 (487)
T ss_pred EEEecCCCceEEEEEeccCC-ceeEEecCCCceeeE-EEcCCCCEEEEcCCCeEEEEEecCCceehhhhhcccceEE--E
Confidence 47788889999999988865 677777666445433 234444455566678999999997765433222 12111 1
Q ss_pred ceeccccccccCCCeEEEEe-CCEEEEEECCCCcEEEEEeccCcce
Q 003792 133 LLLVPTNLKVDKDSLILVSS-KGCLHAVSSIDGEILWTRDFAAESV 177 (795)
Q Consensus 133 ~~~~~~~~~~~~~~~V~V~~-~g~l~ald~~tG~~~W~~~~~~~~~ 177 (795)
+.+.. + ...++-.+ |+.+..+|..+=++.-.|+.++|-+
T Consensus 244 L~l~s-----~-~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~~pvL 283 (487)
T KOG0310|consen 244 LRLAS-----D-STRLLSGSLDRHVKVFDTTNYKVVHSWKYPGPVL 283 (487)
T ss_pred EEeec-----C-CceEeecccccceEEEEccceEEEEeeeccccee
Confidence 11111 1 12233334 9999999988888887777777654
No 106
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=83.58 E-value=25 Score=42.02 Aligned_cols=150 Identities=9% Similarity=0.118 Sum_probs=84.2
Q ss_pred CCEEEEEeC-C------CEEEEEECcCCccceEEEcCCcceee--eeeeeeCCEEEEEEccC------CeEEEEeCCCCc
Q 003792 53 RKRVVVSTE-E------NVIASLDLRHGEIFWRHVLGINDVVD--GIDIALGKYVITLSSDG------STLRAWNLPDGQ 117 (795)
Q Consensus 53 ~~~v~vat~-~------g~l~ALn~~tG~ivWR~~l~~~~~i~--~l~~~~g~~~V~Vs~~g------~~v~A~d~~tG~ 117 (795)
.+.||+... . ..+-++|++++ .|+...+-+..-. +. +..++.++++||.+ ..+.-+|+.+++
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~--~w~~~a~m~~~r~~~~~-~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~ 360 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTN--EWSSLAPMPSPRCRVGV-AVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQ 360 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcC--cEeecCCCCcccccccE-EEECCEEEEEccccCCCcccceEEEecCCCCc
Confidence 455665443 2 46889999999 6887665442111 22 23555555656654 467889998888
Q ss_pred EeEEEeccCccc-cCCceeccccccccCCCeEEEEe--C-----CEEEEEECCCCcEEEEEeccCcceeeeeEEEEecCC
Q 003792 118 MVWESFLRGSKH-SKPLLLVPTNLKVDKDSLILVSS--K-----GCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESD 189 (795)
Q Consensus 118 llWe~~~~~~~~-s~~~~~~~~~~~~~~~~~V~V~~--~-----g~l~ald~~tG~~~W~~~~~~~~~~~~~vv~s~~~~ 189 (795)
|.. +..-.. .....+. .-++.+|+.+ + ..+-++|+.+ -.|+...+.... ....-...-++
T Consensus 361 --W~~-~a~M~~~R~~~~v~------~l~g~iYavGG~dg~~~l~svE~YDp~~--~~W~~va~m~~~-r~~~gv~~~~g 428 (571)
T KOG4441|consen 361 --WTP-VAPMNTKRSDFGVA------VLDGKLYAVGGFDGEKSLNSVECYDPVT--NKWTPVAPMLTR-RSGHGVAVLGG 428 (571)
T ss_pred --eec-cCCccCccccceeE------EECCEEEEEeccccccccccEEEecCCC--CcccccCCCCcc-eeeeEEEEECC
Confidence 886 221111 0111111 1145566642 2 2355666554 468877655432 11221135789
Q ss_pred EEEEEEecCCce---eEEEEEEcCCCceeeeee
Q 003792 190 QIYVVGYAGSSQ---FHAYQINAMNGELLNHET 219 (795)
Q Consensus 190 ~Vyvv~~~g~~~---~~v~ald~~tG~~~w~~~ 219 (795)
.+|++|...+.. -.+.++|+.|++ |+..
T Consensus 429 ~iYi~GG~~~~~~~l~sve~YDP~t~~--W~~~ 459 (571)
T KOG4441|consen 429 KLYIIGGGDGSSNCLNSVECYDPETNT--WTLI 459 (571)
T ss_pred EEEEEcCcCCCccccceEEEEcCCCCc--eeec
Confidence 999988643322 568899998874 5553
No 107
>PRK00178 tolB translocation protein TolB; Provisional
Probab=83.53 E-value=87 Score=35.61 Aligned_cols=148 Identities=14% Similarity=0.082 Sum_probs=74.3
Q ss_pred cCCCEEEEEeCC---CEEEEEECcCCccceEEEcCCcceeeeeee-eeCCEEEEEEcc--CCeEEEEeCCCCcEeEEEec
Q 003792 51 TGRKRVVVSTEE---NVIASLDLRHGEIFWRHVLGINDVVDGIDI-ALGKYVITLSSD--GSTLRAWNLPDGQMVWESFL 124 (795)
Q Consensus 51 ~~~~~v~vat~~---g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~-~~g~~~V~Vs~~--g~~v~A~d~~tG~llWe~~~ 124 (795)
+++++|+..+.+ ..|+.+|.++|+.. +.....+....... ..|+.+++.... ...++.+|..+|...- +
T Consensus 208 pDG~~la~~s~~~~~~~l~~~~l~~g~~~--~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~---l 282 (430)
T PRK00178 208 PDGKRIAYVSFEQKRPRIFVQNLDTGRRE--QITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSR---V 282 (430)
T ss_pred CCCCEEEEEEcCCCCCEEEEEECCCCCEE--EccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeEE---c
Confidence 345566544432 47899999888752 22221211111111 245556554432 2479999999987531 2
Q ss_pred cCcc-ccCCceeccccccccCCCeEEEEe----CCEEEEEECCCCcEE-EEEeccCcceeeeeEEEEecCCEEEEEEecC
Q 003792 125 RGSK-HSKPLLLVPTNLKVDKDSLILVSS----KGCLHAVSSIDGEIL-WTRDFAAESVEVQQVIQLDESDQIYVVGYAG 198 (795)
Q Consensus 125 ~~~~-~s~~~~~~~~~~~~~~~~~V~V~~----~g~l~ald~~tG~~~-W~~~~~~~~~~~~~vv~s~~~~~Vyvv~~~g 198 (795)
.... ....+... .+ ++.++..+ ...++.+|..+|+.. ..+.. ... .....+.+++.+++.+..+
T Consensus 283 t~~~~~~~~~~~s-----pD-g~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~--~~~--~~~~~Spdg~~i~~~~~~~ 352 (430)
T PRK00178 283 TNHPAIDTEPFWG-----KD-GRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVG--NYN--ARPRLSADGKTLVMVHRQD 352 (430)
T ss_pred ccCCCCcCCeEEC-----CC-CCEEEEEECCCCCceEEEEECCCCCEEEeecCC--CCc--cceEECCCCCEEEEEEccC
Confidence 2111 10111122 22 23344433 347999999888753 22211 111 1111134566666655433
Q ss_pred CceeEEEEEEcCCCce
Q 003792 199 SSQFHAYQINAMNGEL 214 (795)
Q Consensus 199 ~~~~~v~ald~~tG~~ 214 (795)
+ ...++.+|+.+|+.
T Consensus 353 ~-~~~l~~~dl~tg~~ 367 (430)
T PRK00178 353 G-NFHVAAQDLQRGSV 367 (430)
T ss_pred C-ceEEEEEECCCCCE
Confidence 2 34688899999875
No 108
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=82.24 E-value=16 Score=41.54 Aligned_cols=73 Identities=12% Similarity=0.216 Sum_probs=55.3
Q ss_pred CCCEEEEEeCCCEEEEEECcCCccceEEEcCCcceeeeeeeeeCCEEEEEEccCCeEEEEeCCCCcEeEEEecc
Q 003792 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLR 125 (795)
Q Consensus 52 ~~~~v~vat~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~~~ 125 (795)
.......++-+..|---|.+||+..=|..+.......-++ +.+..++++|+.+++++.||..+|+++=|+...
T Consensus 269 ~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~~cvkf~-pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~h 341 (503)
T KOG0282|consen 269 CGTSFLSASFDRFLKLWDTETGQVLSRFHLDKVPTCVKFH-PDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRH 341 (503)
T ss_pred cCCeeeeeecceeeeeeccccceEEEEEecCCCceeeecC-CCCCcEEEEecCCCcEEEEeccchHHHHHHHhh
Confidence 3556888888999999999999999998887652211222 234467777887889999999999987666544
No 109
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=82.14 E-value=72 Score=33.72 Aligned_cols=61 Identities=15% Similarity=0.305 Sum_probs=38.5
Q ss_pred CCEEEEEeCCCEEEEEECcCCccceEEEcCCcceeeeeeeeeCCEEEEEEccCCeEEEEeCCC
Q 003792 53 RKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPD 115 (795)
Q Consensus 53 ~~~v~vat~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~t 115 (795)
++-.|+++|+|.+---|.+. +.=.+.+....++...-+.-.+.-++++...+.||.||...
T Consensus 95 grWMyTgseDgt~kIWdlR~--~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~ 155 (311)
T KOG0315|consen 95 GRWMYTGSEDGTVKIWDLRS--LSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGE 155 (311)
T ss_pred CeEEEecCCCceEEEEeccC--cccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccC
Confidence 34499999999999888887 22223333222233331233555667676678999999853
No 110
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=81.37 E-value=38 Score=37.98 Aligned_cols=212 Identities=12% Similarity=0.126 Sum_probs=102.5
Q ss_pred cceeEEEeccCceeeeeeeeeccCCCEEEEEeCCCEEEEEECcCCccceEEEcCCcceeeee-eeeeCCEEEEEEccCCe
Q 003792 29 GLMDWHQQYIGKVKHAVFHTQKTGRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGI-DIALGKYVITLSSDGST 107 (795)
Q Consensus 29 G~~dW~~~~vG~~~~~~f~~~~~~~~~v~vat~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l-~~~~g~~~V~Vs~~g~~ 107 (795)
+++.=.+.++|..+...|..=+++++.+++..-+-.+.--|+.||+.+=.+.-..+.+.... -.+.|..+|+ |+.++.
T Consensus 257 ~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~-Gs~dr~ 335 (519)
T KOG0293|consen 257 VHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVT-GSPDRT 335 (519)
T ss_pred cceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEe-cCCCCc
Confidence 33444555666655555555456677777777777788889999987655444322222211 1235555555 666789
Q ss_pred EEEEeCCCCcEe--EEEeccCccccCCceeccccccccCCCeEEEE-eCCEEEEEECCCCcEEEEEeccCcceeeeeEEE
Q 003792 108 LRAWNLPDGQMV--WESFLRGSKHSKPLLLVPTNLKVDKDSLILVS-SKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQ 184 (795)
Q Consensus 108 v~A~d~~tG~ll--We~~~~~~~~s~~~~~~~~~~~~~~~~~V~V~-~~g~l~ald~~tG~~~W~~~~~~~~~~~~~vv~ 184 (795)
+.+||. ||.++ |+..-. +.+ .++.+ ..| ++.++.. .+.++..++..+-.-+=......+-. +..
T Consensus 336 i~~wdl-Dgn~~~~W~gvr~-~~v-~dlai-----t~D-gk~vl~v~~d~~i~l~~~e~~~dr~lise~~~it---s~~- 402 (519)
T KOG0293|consen 336 IIMWDL-DGNILGNWEGVRD-PKV-HDLAI-----TYD-GKYVLLVTVDKKIRLYNREARVDRGLISEEQPIT---SFS- 402 (519)
T ss_pred EEEecC-Ccchhhccccccc-cee-EEEEE-----cCC-CcEEEEEecccceeeechhhhhhhccccccCcee---EEE-
Confidence 999997 78865 443322 111 12111 122 3444444 57777777755422111111111100 110
Q ss_pred EecCCEEEEEEecCCceeEEEEEEcCCCceeeeeeeeccC-CcccceEEecCcEEEEEECCCCeEEEEEeecCe
Q 003792 185 LDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAFSG-GFVGDVALVSSDTLVTLDTTRSILVTVSFKNRK 257 (795)
Q Consensus 185 s~~~~~Vyvv~~~g~~~~~v~ald~~tG~~~w~~~v~~~~-~~~~~~~~vg~~~lv~~d~~~~~L~v~~l~sg~ 257 (795)
...+++.+.+.+... .+.-.|.+.-..+.++.-...+ -+-++|.=-++.-++..-+..+++++=...+|+
T Consensus 403 iS~d~k~~LvnL~~q---ei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgk 473 (519)
T KOG0293|consen 403 ISKDGKLALVNLQDQ---EIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGK 473 (519)
T ss_pred EcCCCcEEEEEcccC---eeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCc
Confidence 124445554554443 3444444433333222110000 111133211222455555566778777777776
No 111
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=80.75 E-value=80 Score=33.29 Aligned_cols=189 Identities=15% Similarity=0.142 Sum_probs=103.4
Q ss_pred CCEEEEEeCCCEEEEEECcC---CccceEEEcCCcc------------eeeeeeeeeCCEEEEEEccCCeEEEEeC----
Q 003792 53 RKRVVVSTEENVIASLDLRH---GEIFWRHVLGIND------------VVDGIDIALGKYVITLSSDGSTLRAWNL---- 113 (795)
Q Consensus 53 ~~~v~vat~~g~l~ALn~~t---G~ivWR~~l~~~~------------~i~~l~~~~g~~~V~Vs~~g~~v~A~d~---- 113 (795)
...+++++..|.|+-+..++ |+. +.++ .+..+ ..-++.+..++ +|.|++|.=
T Consensus 22 ~~~l~agn~~G~iav~sl~sl~s~sa------~~~gk~~iv~eqahdgpiy~~--~f~d~~Lls~g-dG~V~gw~W~E~~ 92 (325)
T KOG0649|consen 22 KQYLFAGNLFGDIAVLSLKSLDSGSA------EPPGKLKIVPEQAHDGPIYYL--AFHDDFLLSGG-DGLVYGWEWNEEE 92 (325)
T ss_pred ceEEEEecCCCeEEEEEehhhhcccc------CCCCCcceeeccccCCCeeee--eeehhheeecc-CceEEEeeehhhh
Confidence 44577777788877765543 211 1111 11111 22344444344 479999963
Q ss_pred --CCCcEeEEEeccCcccc------CCceeccccccccCCCeEEE-EeCCEEEEEECCCCcEEEEEeccCcceeeeeEEE
Q 003792 114 --PDGQMVWESFLRGSKHS------KPLLLVPTNLKVDKDSLILV-SSKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQ 184 (795)
Q Consensus 114 --~tG~llWe~~~~~~~~s------~~~~~~~~~~~~~~~~~V~V-~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~vv~ 184 (795)
.-=+.+||....-...+ .++.+.| - .+.++. .+|+.++..|.++|+..=+++-...-+ -.++.
T Consensus 93 es~~~K~lwe~~~P~~~~~~evPeINam~ldP-----~-enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYv--H~vv~ 164 (325)
T KOG0649|consen 93 ESLATKRLWEVKIPMQVDAVEVPEINAMWLDP-----S-ENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYV--HSVVG 164 (325)
T ss_pred hhccchhhhhhcCccccCcccCCccceeEecc-----C-CCcEEEecCCeEEEEEEecCCEEEEEEcCCccee--eeeee
Confidence 23367898765422100 1111211 1 344444 479999999999999988886544322 11221
Q ss_pred EecCCEEEEEEecCCceeEEEEEEcCCCceeeeeeeec-c---C-Cccc--ceEEecCcEEEEEECCCCeEEEEEeecCe
Q 003792 185 LDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAF-S---G-GFVG--DVALVSSDTLVTLDTTRSILVTVSFKNRK 257 (795)
Q Consensus 185 s~~~~~Vyvv~~~g~~~~~v~ald~~tG~~~w~~~v~~-~---~-~~~~--~~~~vg~~~lv~~d~~~~~L~v~~l~sg~ 257 (795)
-..++.|+-.+-+| .+...|.+|++-+.....-- + + .... .++-++..-++|.- ..+|..-.|.+-.
T Consensus 165 R~~~~qilsG~EDG----tvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGg--Gp~lslwhLrsse 238 (325)
T KOG0649|consen 165 RNANGQILSGAEDG----TVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGG--GPKLSLWHLRSSE 238 (325)
T ss_pred cccCcceeecCCCc----cEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecC--CCceeEEeccCCC
Confidence 13566777655555 78889999998764432111 1 1 1111 34444666778873 3466666666644
Q ss_pred eeeEEEee
Q 003792 258 IAFQETHL 265 (795)
Q Consensus 258 ~~~~~~~l 265 (795)
....+|+
T Consensus 239 -~t~vfpi 245 (325)
T KOG0649|consen 239 -STCVFPI 245 (325)
T ss_pred -ceEEEec
Confidence 3555665
No 112
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=80.22 E-value=36 Score=39.72 Aligned_cols=186 Identities=13% Similarity=0.151 Sum_probs=98.3
Q ss_pred EEEEeCCCEEEEEECcCCccceEEEcCCc-ceeeeeeeeeCCEEEEEEccCCeEEEEeCCCCcEeEEEeccCccc----c
Q 003792 56 VVVSTEENVIASLDLRHGEIFWRHVLGIN-DVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKH----S 130 (795)
Q Consensus 56 v~vat~~g~l~ALn~~tG~ivWR~~l~~~-~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~~~~~~~----s 130 (795)
+|++.....||.||..-|. |=..++.. +.+....+..-.+++..|+..+.|-+||+.+-...=.......+- .
T Consensus 148 ly~~gsg~evYRlNLEqGr--fL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~ 225 (703)
T KOG2321|consen 148 LYLVGSGSEVYRLNLEQGR--FLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGG 225 (703)
T ss_pred EEEeecCcceEEEEccccc--cccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccc
Confidence 8888888899999999995 44455443 122222223345677778877899999998876655554433211 0
Q ss_pred CCceeccccccccCCC-eEEEE-eCCEEEEEECCCCcEEEEEeccCcceeeeeE--EEEecCCEEEEEEecCCceeEEEE
Q 003792 131 KPLLLVPTNLKVDKDS-LILVS-SKGCLHAVSSIDGEILWTRDFAAESVEVQQV--IQLDESDQIYVVGYAGSSQFHAYQ 206 (795)
Q Consensus 131 ~~~~~~~~~~~~~~~~-~V~V~-~~g~l~ald~~tG~~~W~~~~~~~~~~~~~v--v~s~~~~~Vyvv~~~g~~~~~v~a 206 (795)
...+.+. ......++ .+-|. +.|.++-+|..+-+++-.-+.... +....+ .+....+.|+ +.+.. .+-.
T Consensus 226 ~~~~svT-al~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e-~pi~~l~~~~~~~q~~v~--S~Dk~---~~ki 298 (703)
T KOG2321|consen 226 DAAPSVT-ALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYE-LPIKKLDWQDTDQQNKVV--SMDKR---ILKI 298 (703)
T ss_pred cccCcce-EEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCc-cceeeecccccCCCceEE--ecchH---Hhhh
Confidence 0111111 01112123 24444 588999999888777765433221 101111 1111122222 33321 3444
Q ss_pred EEcCCCceeeeeeeeccCCcccceEEecCcEEEEEECCCCeEEEEEe
Q 003792 207 INAMNGELLNHETAAFSGGFVGDVALVSSDTLVTLDTTRSILVTVSF 253 (795)
Q Consensus 207 ld~~tG~~~w~~~v~~~~~~~~~~~~vg~~~lv~~d~~~~~L~v~~l 253 (795)
.|..||++.... .-.+++..-|.+.+.+++..+. .++.++..-+
T Consensus 299 Wd~~~Gk~~asi--Ept~~lND~C~~p~sGm~f~An-e~~~m~~yyi 342 (703)
T KOG2321|consen 299 WDECTGKPMASI--EPTSDLNDFCFVPGSGMFFTAN-ESSKMHTYYI 342 (703)
T ss_pred cccccCCceeec--cccCCcCceeeecCCceEEEec-CCCcceeEEc
Confidence 577777776443 2224566678887777655443 2344443333
No 113
>PHA03098 kelch-like protein; Provisional
Probab=79.97 E-value=66 Score=37.84 Aligned_cols=135 Identities=10% Similarity=0.058 Sum_probs=67.8
Q ss_pred eeCCEEEEEEccC------CeEEEEeCCCCcEeEEEeccCccccCCceeccccccccCCCeEEEEeC-------CEEEEE
Q 003792 93 ALGKYVITLSSDG------STLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSSK-------GCLHAV 159 (795)
Q Consensus 93 ~~g~~~V~Vs~~g------~~v~A~d~~tG~llWe~~~~~~~~s~~~~~~~~~~~~~~~~~V~V~~~-------g~l~al 159 (795)
..++.++++||.+ ..+..+|..+++ |+.-..-+....... ...-++.+++.++ ..+..+
T Consensus 292 ~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~--W~~~~~~~~~R~~~~------~~~~~~~lyv~GG~~~~~~~~~v~~y 363 (534)
T PHA03098 292 VLNNVIYFIGGMNKNNLSVNSVVSYDTKTKS--WNKVPELIYPRKNPG------VTVFNNRIYVIGGIYNSISLNTVESW 363 (534)
T ss_pred EECCEEEEECCCcCCCCeeccEEEEeCCCCe--eeECCCCCcccccce------EEEECCEEEEEeCCCCCEecceEEEE
Confidence 4566666667632 257889988764 754221110000011 1112566777532 357778
Q ss_pred ECCCCcEEEEEeccCcceeeeeEEEEecCCEEEEEEecC---CceeEEEEEEcCCCceeeeeeeeccCCcccceEE-ecC
Q 003792 160 SSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAG---SSQFHAYQINAMNGELLNHETAAFSGGFVGDVAL-VSS 235 (795)
Q Consensus 160 d~~tG~~~W~~~~~~~~~~~~~vv~s~~~~~Vyvv~~~g---~~~~~v~ald~~tG~~~w~~~v~~~~~~~~~~~~-vg~ 235 (795)
|..++ .|+...+.+.- ........-++.+|++|... ...-.+..+|+.++ .|+..-..|....+.+.. .++
T Consensus 364 d~~~~--~W~~~~~lp~~-r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~--~W~~~~~~p~~r~~~~~~~~~~ 438 (534)
T PHA03098 364 KPGES--KWREEPPLIFP-RYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTN--KWSKGSPLPISHYGGCAIYHDG 438 (534)
T ss_pred cCCCC--ceeeCCCcCcC-CccceEEEECCEEEEECCcCCCCcccceEEEEeCCCC--eeeecCCCCccccCceEEEECC
Confidence 87765 58764432211 00111124578999987531 11135788898875 477644444444443333 344
Q ss_pred cEEEE
Q 003792 236 DTLVT 240 (795)
Q Consensus 236 ~~lv~ 240 (795)
.++++
T Consensus 439 ~iyv~ 443 (534)
T PHA03098 439 KIYVI 443 (534)
T ss_pred EEEEE
Confidence 44443
No 114
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=79.89 E-value=1e+02 Score=34.12 Aligned_cols=147 Identities=14% Similarity=0.135 Sum_probs=82.8
Q ss_pred CEEEEEeCCCEEEEEECcCCccceEEEcCCc-ceeeeeeeeeCCE--EEEEEccCCeEEEEeCCCCcEeEEEeccCcccc
Q 003792 54 KRVVVSTEENVIASLDLRHGEIFWRHVLGIN-DVVDGIDIALGKY--VITLSSDGSTLRAWNLPDGQMVWESFLRGSKHS 130 (795)
Q Consensus 54 ~~v~vat~~g~l~ALn~~tG~ivWR~~l~~~-~~i~~l~~~~g~~--~V~Vs~~g~~v~A~d~~tG~llWe~~~~~~~~s 130 (795)
.-...++.++.+.-.|..||++.=. +..- ..+.++ ...+. -+|-.+.+++|-.||+++-+.+-++...-..+
T Consensus 164 ~wf~tgs~DrtikIwDlatg~Lklt--ltGhi~~vr~v--avS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V- 238 (460)
T KOG0285|consen 164 EWFATGSADRTIKIWDLATGQLKLT--LTGHIETVRGV--AVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGV- 238 (460)
T ss_pred eeEEecCCCceeEEEEcccCeEEEe--ecchhheeeee--eecccCceEEEecCCCeeEEEechhhhhHHHhcccccee-
Confidence 3366677899999999999987543 2211 123344 22222 23335678899999999999998877653222
Q ss_pred CCceeccccccccCCCeEEEE-e-CCEEEEEECCCCcEEEEEeccCcceeeeeEEEEecCCEEEEEEecCCceeEEEEEE
Q 003792 131 KPLLLVPTNLKVDKDSLILVS-S-KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQIN 208 (795)
Q Consensus 131 ~~~~~~~~~~~~~~~~~V~V~-~-~g~l~ald~~tG~~~W~~~~~~~~~~~~~vv~s~~~~~Vyvv~~~g~~~~~v~ald 208 (795)
..+.+.| ..++++. + |.....-|..+-..+-...-. .....+++.-..+..||-.+.++ .+--.|
T Consensus 239 ~~L~lhP-------Tldvl~t~grDst~RvWDiRtr~~V~~l~GH--~~~V~~V~~~~~dpqvit~S~D~----tvrlWD 305 (460)
T KOG0285|consen 239 YCLDLHP-------TLDVLVTGGRDSTIRVWDIRTRASVHVLSGH--TNPVASVMCQPTDPQVITGSHDS----TVRLWD 305 (460)
T ss_pred EEEeccc-------cceeEEecCCcceEEEeeecccceEEEecCC--CCcceeEEeecCCCceEEecCCc----eEEEee
Confidence 1222222 2445554 2 555555555554444443221 11233443223466777655554 566678
Q ss_pred cCCCceeeee
Q 003792 209 AMNGELLNHE 218 (795)
Q Consensus 209 ~~tG~~~w~~ 218 (795)
...|+.+-..
T Consensus 306 l~agkt~~tl 315 (460)
T KOG0285|consen 306 LRAGKTMITL 315 (460)
T ss_pred eccCceeEee
Confidence 8888766443
No 115
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=79.87 E-value=38 Score=38.25 Aligned_cols=94 Identities=16% Similarity=0.244 Sum_probs=63.0
Q ss_pred ceeEEEeccCceeee-----------eeeeeccCCCEEEEEeCCCEEEEEECc---CCccceEEEcCCcceeeeeeeeeC
Q 003792 30 LMDWHQQYIGKVKHA-----------VFHTQKTGRKRVVVSTEENVIASLDLR---HGEIFWRHVLGINDVVDGIDIALG 95 (795)
Q Consensus 30 ~~dW~~~~vG~~~~~-----------~f~~~~~~~~~v~vat~~g~l~ALn~~---tG~ivWR~~l~~~~~i~~l~~~~g 95 (795)
.+.|.-.. |+|+.. .|+. .....++.+|.++.|+-.|-| .-...|+..-+-.. ... -...
T Consensus 268 V~lWD~~~-g~p~~s~~~~~k~Vq~l~wh~--~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEk--v~w-~~~s 341 (463)
T KOG0270|consen 268 VKLWDVDT-GKPKSSITHHGKKVQTLEWHP--YEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEK--VAW-DPHS 341 (463)
T ss_pred EEEEEcCC-CCcceehhhcCCceeEEEecC--CCceEEEeccccceEEeeeccCccccCceEEeccceEE--EEe-cCCC
Confidence 36788754 666532 2221 113347888889999999888 56677886543321 111 1245
Q ss_pred CEEEEEEccCCeEEEEeCC-CCcEeEEEeccCccc
Q 003792 96 KYVITLSSDGSTLRAWNLP-DGQMVWESFLRGSKH 129 (795)
Q Consensus 96 ~~~V~Vs~~g~~v~A~d~~-tG~llWe~~~~~~~~ 129 (795)
...++++.++|+||.+|+. .|+++|+........
T Consensus 342 e~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~I 376 (463)
T KOG0270|consen 342 ENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEI 376 (463)
T ss_pred ceeEEEecCCceEEeeecCCCCCceeEEEeccCCc
Confidence 5677778888899999987 679999999887654
No 116
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=79.72 E-value=1.3e+02 Score=35.04 Aligned_cols=182 Identities=10% Similarity=0.147 Sum_probs=98.1
Q ss_pred CCEEEEEeCCCEEEEEECcCCccceEEEcCCcceeeeeeeeeCCEEEEEEccCCeEEEEeCCCCcEeEEEeccCccccCC
Q 003792 53 RKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKP 132 (795)
Q Consensus 53 ~~~v~vat~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~~~~~~~s~~ 132 (795)
.+.|++.+-.|.|--||+.++++. ++.-+-..+|..+.+..++..++-++.+|.+..||..+|.-- ++.+... +
T Consensus 290 kd~lItVSl~G~in~ln~~d~~~~-~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~---~~~g~~h--~ 363 (603)
T KOG0318|consen 290 KDHLITVSLSGTINYLNPSDPSVL-KVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSD---RLAGKGH--T 363 (603)
T ss_pred CCeEEEEEcCcEEEEecccCCChh-heecccccceeEEEEcCCCCEEEeeccCceEEEEecCCcccc---ccccccc--c
Confidence 677999999999999999999943 333333345666644444455664556789999999998743 2222111 1
Q ss_pred ceeccccccccCCCeEEE-EeCCEEEEEECCCCcEEEE--EeccCcceeeeeEEEEecCC-EEEEEEecCCceeEEEEEE
Q 003792 133 LLLVPTNLKVDKDSLILV-SSKGCLHAVSSIDGEILWT--RDFAAESVEVQQVIQLDESD-QIYVVGYAGSSQFHAYQIN 208 (795)
Q Consensus 133 ~~~~~~~~~~~~~~~V~V-~~~g~l~ald~~tG~~~W~--~~~~~~~~~~~~vv~s~~~~-~Vyvv~~~g~~~~~v~ald 208 (795)
..+..+ .....+.++. ..|..|..++...+.--=. .+.+.. |..+- +..++ ...+.+.. .++.|.
T Consensus 364 nqI~~~--~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~Q---P~~la-v~~d~~~avv~~~~-----~iv~l~ 432 (603)
T KOG0318|consen 364 NQIKGM--AASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQ---PKGLA-VLSDGGTAVVACIS-----DIVLLQ 432 (603)
T ss_pred ceEEEE--eecCCCcEEEEecCCeEEEEecccCcccccceeecCCC---ceeEE-EcCCCCEEEEEecC-----cEEEEe
Confidence 122221 2222244555 4699999998755432211 222221 22221 12333 44443333 245554
Q ss_pred cCCCceeeeeeeeccCCcccceEEe-cCcEEEEEECCCCeEEEEEeecCe
Q 003792 209 AMNGELLNHETAAFSGGFVGDVALV-SSDTLVTLDTTRSILVTVSFKNRK 257 (795)
Q Consensus 209 ~~tG~~~w~~~v~~~~~~~~~~~~v-g~~~lv~~d~~~~~L~v~~l~sg~ 257 (795)
-.++-. ..|-+...+++.+ -++..+|+-...+.+|+..|..+.
T Consensus 433 ~~~~~~------~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~ 476 (603)
T KOG0318|consen 433 DQTKVS------SIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDE 476 (603)
T ss_pred cCCcce------eeccccccceEEEcCCCCEEEEecccceEEEEEecCCc
Confidence 333322 1233344444444 223444555556789998887654
No 117
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=79.23 E-value=1.1e+02 Score=35.36 Aligned_cols=147 Identities=17% Similarity=0.286 Sum_probs=79.3
Q ss_pred CCEEEEEeCCCEEEEEECcCCccceEEEcCCcceeeeeeeeeCCEEEEEEccCCeEEEEeCCCCcEeEEEeccCccccCC
Q 003792 53 RKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKP 132 (795)
Q Consensus 53 ~~~v~vat~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~~~~~~~s~~ 132 (795)
.+.+|++|..|.|--=+..+|--.=- +...+..-++.....+..+.-++.++.++.|| +-++.|...+..+.. .
T Consensus 339 ~~di~vGTtrN~iL~Gt~~~~f~~~v--~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d~~~--~ 412 (626)
T KOG2106|consen 339 KGDILVGTTRNFILQGTLENGFTLTV--QGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIEDPAE--C 412 (626)
T ss_pred CCcEEEeeccceEEEeeecCCceEEE--EecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEecCcee--E
Confidence 33499999888764433333311111 11111222342233344444367778999999 889999999877653 1
Q ss_pred ceeccccccccCCCeEEEE-eCCEEEEEECCCCcEEEEEeccCcceeeeeEEEEecCCEEEEEEecCCceeEEEEEEcCC
Q 003792 133 LLLVPTNLKVDKDSLILVS-SKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMN 211 (795)
Q Consensus 133 ~~~~~~~~~~~~~~~V~V~-~~g~l~ald~~tG~~~W~~~~~~~~~~~~~vv~s~~~~~Vyvv~~~g~~~~~v~ald~~t 211 (795)
+.+ +..+.+.+. ..|+...+|.++-..+=.... .. +..++.-.-++..++++... .++.++-+|. +
T Consensus 413 ~~f-------hpsg~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~---~ls~v~ysp~G~~lAvgs~d-~~iyiy~Vs~-~ 479 (626)
T KOG2106|consen 413 ADF-------HPSGVVAVGTATGRWFVLDTETQDLVTIHTD-NE---QLSVVRYSPDGAFLAVGSHD-NHIYIYRVSA-N 479 (626)
T ss_pred eec-------cCcceEEEeeccceEEEEecccceeEEEEec-CC---ceEEEEEcCCCCEEEEecCC-CeEEEEEECC-C
Confidence 122 224555555 489999999998444433333 22 23333212344444455443 2466666663 5
Q ss_pred Cceeeee
Q 003792 212 GELLNHE 218 (795)
Q Consensus 212 G~~~w~~ 218 (795)
|......
T Consensus 480 g~~y~r~ 486 (626)
T KOG2106|consen 480 GRKYSRV 486 (626)
T ss_pred CcEEEEe
Confidence 5554333
No 118
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=79.10 E-value=1.1e+02 Score=33.96 Aligned_cols=189 Identities=10% Similarity=0.080 Sum_probs=107.5
Q ss_pred CEEEEEeC-----CCEEEEEECcCCccceEEEcCCcceeeeeeeeeCCEEEEE-Ec------cC---CeEEEEeCCCCcE
Q 003792 54 KRVVVSTE-----ENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITL-SS------DG---STLRAWNLPDGQM 118 (795)
Q Consensus 54 ~~v~vat~-----~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~V-s~------~g---~~v~A~d~~tG~l 118 (795)
.||||.+- .+.++-+|+++|+.+=....+-... +.+..++..+|+ +. .| ..|..||..|=.+
T Consensus 3 ~rvyV~D~~~~~~~~rv~viD~d~~k~lGmi~~g~~~~---~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~ 79 (342)
T PF06433_consen 3 HRVYVQDPVFFHMTSRVYVIDADSGKLLGMIDTGFLGN---VALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSP 79 (342)
T ss_dssp TEEEEEE-GGGGSSEEEEEEETTTTEEEEEEEEESSEE---EEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEE
T ss_pred cEEEEECCccccccceEEEEECCCCcEEEEeecccCCc---eeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcc
Confidence 45666654 3578888888887643333322211 111223333333 21 12 3589999999999
Q ss_pred eEEEeccCc-cccCCceeccccccccCCCeEEEEe---CCEEEEEECCCCcEEEEEeccCcceeeeeEEEEecCCEEEEE
Q 003792 119 VWESFLRGS-KHSKPLLLVPTNLKVDKDSLILVSS---KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVV 194 (795)
Q Consensus 119 lWe~~~~~~-~~s~~~~~~~~~~~~~~~~~V~V~~---~g~l~ald~~tG~~~W~~~~~~~~~~~~~vv~s~~~~~Vyvv 194 (795)
.||..+... .. ........-...+.++.++|.. ...|..+|.+.++++=+.+.|.=.. +.+ ..+...+.+
T Consensus 80 ~~EI~iP~k~R~-~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~----iyP-~~~~~F~~l 153 (342)
T PF06433_consen 80 TGEIEIPPKPRA-QVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWL----IYP-SGNRGFSML 153 (342)
T ss_dssp EEEEEETTS-B---BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEE----EEE-EETTEEEEE
T ss_pred cceEecCCcchh-eecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEE----EEe-cCCCceEEE
Confidence 999999864 22 1111111000122257788863 7889999999999998887775322 222 356678888
Q ss_pred EecCCceeEEEEEEcCCCceeeeeeeeccCCccc-----ceEEe-cCcEEEEEECCCCeEEEEEeecCe
Q 003792 195 GYAGSSQFHAYQINAMNGELLNHETAAFSGGFVG-----DVALV-SSDTLVTLDTTRSILVTVSFKNRK 257 (795)
Q Consensus 195 ~~~g~~~~~v~ald~~tG~~~w~~~v~~~~~~~~-----~~~~v-g~~~lv~~d~~~~~L~v~~l~sg~ 257 (795)
|-+|+ +..+.|| ..|+.. +.. ........ .+.++ .++.+++.. ++|.++..++....
T Consensus 154 C~DGs--l~~v~Ld-~~Gk~~-~~~-t~~F~~~~dp~f~~~~~~~~~~~~~F~S-y~G~v~~~dlsg~~ 216 (342)
T PF06433_consen 154 CGDGS--LLTVTLD-ADGKEA-QKS-TKVFDPDDDPLFEHPAYSRDGGRLYFVS-YEGNVYSADLSGDS 216 (342)
T ss_dssp ETTSC--EEEEEET-STSSEE-EEE-EEESSTTTS-B-S--EEETTTTEEEEEB-TTSEEEEEEETTSS
T ss_pred ecCCc--eEEEEEC-CCCCEe-Eee-ccccCCCCcccccccceECCCCeEEEEe-cCCEEEEEeccCCc
Confidence 88874 3444555 378886 332 11212222 22233 345677776 67999999998765
No 119
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=78.96 E-value=1e+02 Score=33.47 Aligned_cols=198 Identities=14% Similarity=0.118 Sum_probs=105.4
Q ss_pred ccCceeeeeeeeeccCCCEEEEEeCCCEEEEEECcCCccceEEEcCCcceeeeeeeeeCCEEEEEEcc--CCeEEEEeCC
Q 003792 37 YIGKVKHAVFHTQKTGRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSD--GSTLRAWNLP 114 (795)
Q Consensus 37 ~vG~~~~~~f~~~~~~~~~v~vat~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~~--g~~v~A~d~~ 114 (795)
+.|++..-.|+. ++..+++.+++..|.-.|..+|+.+=.......+ +...........+.-++. +..+|-++..
T Consensus 13 ~~~~i~sl~fs~---~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG-~~~~~Fth~~~~~i~sStk~d~tIryLsl~ 88 (311)
T KOG1446|consen 13 TNGKINSLDFSD---DGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYG-VDLACFTHHSNTVIHSSTKEDDTIRYLSLH 88 (311)
T ss_pred CCCceeEEEecC---CCCEEEEecCCCeEEEEEcCCCceeeEeeccccc-ccEEEEecCCceEEEccCCCCCceEEEEee
Confidence 445555555653 3566888899999999999999988776665443 222222333333333442 5789999999
Q ss_pred CCcEeEEEeccCccccCCceeccccccccCCCeEEEE-e-CCEEEEEECCCCcEEEEEeccCcc--e-eeeeEEEEe-cC
Q 003792 115 DGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVS-S-KGCLHAVSSIDGEILWTRDFAAES--V-EVQQVIQLD-ES 188 (795)
Q Consensus 115 tG~llWe~~~~~~~~s~~~~~~~~~~~~~~~~~V~V~-~-~g~l~ald~~tG~~~W~~~~~~~~--~-~~~~vv~s~-~~ 188 (795)
|-+-+--+......+ ..+.+.| .++.|+. + |.+++. |-.+.+... + ...+.+.+- ..
T Consensus 89 dNkylRYF~GH~~~V-~sL~~sP-------~~d~FlS~S~D~tvrL---------WDlR~~~cqg~l~~~~~pi~AfDp~ 151 (311)
T KOG1446|consen 89 DNKYLRYFPGHKKRV-NSLSVSP-------KDDTFLSSSLDKTVRL---------WDLRVKKCQGLLNLSGRPIAAFDPE 151 (311)
T ss_pred cCceEEEcCCCCceE-EEEEecC-------CCCeEEecccCCeEEe---------eEecCCCCceEEecCCCcceeECCC
Confidence 999887777665443 3334444 3456664 2 555544 554433211 0 000111122 35
Q ss_pred CEEEEEEecCCceeEEEEEEcCCCceeeeeeeeccCCccc--ceEEecCcEEEEEECCCCeEEEEEeecCe
Q 003792 189 DQIYVVGYAGSSQFHAYQINAMNGELLNHETAAFSGGFVG--DVALVSSDTLVTLDTTRSILVTVSFKNRK 257 (795)
Q Consensus 189 ~~Vyvv~~~g~~~~~v~ald~~tG~~~w~~~v~~~~~~~~--~~~~vg~~~lv~~d~~~~~L~v~~l~sg~ 257 (795)
|.+|+++..+. .++++-+-.-.+.+-....+..+ ...+ ..-+-.++.++.+....+..+++|--+|.
T Consensus 152 GLifA~~~~~~-~IkLyD~Rs~dkgPF~tf~i~~~-~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~ 220 (311)
T KOG1446|consen 152 GLIFALANGSE-LIKLYDLRSFDKGPFTTFSITDN-DEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGT 220 (311)
T ss_pred CcEEEEecCCC-eEEEEEecccCCCCceeEccCCC-CccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCc
Confidence 56676655443 56666555444555544443321 1111 11122222222222245677777777776
No 120
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=78.57 E-value=32 Score=37.27 Aligned_cols=196 Identities=12% Similarity=0.112 Sum_probs=105.6
Q ss_pred cCCCEEEEEeCCCEEEEEECcCCccceEEEcCCccee-------eeeeeeeCCEEEEEEccCCeEEEEeCCCCcEeEEEe
Q 003792 51 TGRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVV-------DGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESF 123 (795)
Q Consensus 51 ~~~~~v~vat~~g~l~ALn~~tG~ivWR~~l~~~~~i-------~~l~~~~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~ 123 (795)
+++..++.++-+|.+-.-|-.+|+++=.......+++ ..+...-+..++.-++.+|++..|...||.-+-++.
T Consensus 223 PDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFd 302 (508)
T KOG0275|consen 223 PDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFD 302 (508)
T ss_pred CCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhh
Confidence 4566788899999999999999987533322222221 111112233344434556788888888888666554
Q ss_pred ccCccccCCceeccccccccCCC-eEEEE-eCCEEEEEECCCCcEEEEEeccCcceeeeeEEEEecCCEEEEEEecCCce
Q 003792 124 LRGSKHSKPLLLVPTNLKVDKDS-LILVS-SKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQ 201 (795)
Q Consensus 124 ~~~~~~s~~~~~~~~~~~~~~~~-~V~V~-~~g~l~ald~~tG~~~W~~~~~~~~~~~~~vv~s~~~~~Vyvv~~~g~~~ 201 (795)
-.-. ++...+. ...++ .++-. .|-.+...-.++|+.+=+++-...-.+-... ...+..+.-.+.+|
T Consensus 303 rAHt---kGvt~l~----FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~f--t~dG~~iisaSsDg--- 370 (508)
T KOG0275|consen 303 RAHT---KGVTCLS----FSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATF--TDDGHHIISASSDG--- 370 (508)
T ss_pred hhhc---cCeeEEE----EccCcchhhcccccceEEEeccccchhHHHhcCccccccceEE--cCCCCeEEEecCCc---
Confidence 2211 1111221 11122 22223 3556666667889888777654332221112 23444555444455
Q ss_pred eEEEEEEcCCCceeeeeeeec-cCCcccceEEe-cC--cEEEEEECCCCeEEEEEeecCeeeeEEEe
Q 003792 202 FHAYQINAMNGELLNHETAAF-SGGFVGDVALV-SS--DTLVTLDTTRSILVTVSFKNRKIAFQETH 264 (795)
Q Consensus 202 ~~v~ald~~tG~~~w~~~v~~-~~~~~~~~~~v-g~--~~lv~~d~~~~~L~v~~l~sg~~~~~~~~ 264 (795)
.+-..+.+|++-+.+++... .-.+. ++++. .+ .++||-- ...++++++. |++ ++.++
T Consensus 371 -tvkvW~~KtteC~~Tfk~~~~d~~vn-sv~~~PKnpeh~iVCNr--sntv~imn~q-GQv-Vrsfs 431 (508)
T KOG0275|consen 371 -TVKVWHGKTTECLSTFKPLGTDYPVN-SVILLPKNPEHFIVCNR--SNTVYIMNMQ-GQV-VRSFS 431 (508)
T ss_pred -cEEEecCcchhhhhhccCCCCcccce-eEEEcCCCCceEEEEcC--CCeEEEEecc-ceE-Eeeec
Confidence 67788888988887775222 11121 22222 22 2667764 4578888875 442 45444
No 121
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=77.73 E-value=73 Score=34.51 Aligned_cols=151 Identities=12% Similarity=0.051 Sum_probs=80.6
Q ss_pred ceeeeeeeeeCCEEEEEEccCCeEEEEeCCCCcEeEEEeccCccccCCceeccccccccCCCeEEEE-eCCEEEEEECCC
Q 003792 85 DVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVS-SKGCLHAVSSID 163 (795)
Q Consensus 85 ~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~~~~~~~s~~~~~~~~~~~~~~~~~V~V~-~~g~l~ald~~t 163 (795)
+.|..+.....++-+.+++-++.+|.+|...-.++=++....+.+ +..+. .+..+++. -+|.|..+|..+
T Consensus 14 d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL--~c~F~-------d~~~~~~G~~dg~vr~~Dln~ 84 (323)
T KOG1036|consen 14 DGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLL--DCAFA-------DESTIVTGGLDGQVRRYDLNT 84 (323)
T ss_pred hceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheecCCcee--eeecc-------CCceEEEeccCceEEEEEecC
Confidence 345444333334445557777899999998877777777666544 11222 13456666 499999999999
Q ss_pred CcEEEEEeccCcceeeeeEE-EEecCCEEEEEEecCCceeEEEEEEcCCCceeeeeeeeccCCcccceEEecCcEEEEEE
Q 003792 164 GEILWTRDFAAESVEVQQVI-QLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAFSGGFVGDVALVSSDTLVTLD 242 (795)
Q Consensus 164 G~~~W~~~~~~~~~~~~~vv-~s~~~~~Vyvv~~~g~~~~~v~ald~~tG~~~w~~~v~~~~~~~~~~~~vg~~~lv~~d 242 (795)
|...=--.... +-+++ .....+.+...+.++ .+-.+|+.+-...-.. ..+..+ -|+-++++.+++.-
T Consensus 85 ~~~~~igth~~----~i~ci~~~~~~~~vIsgsWD~----~ik~wD~R~~~~~~~~--d~~kkV--y~~~v~g~~LvVg~ 152 (323)
T KOG1036|consen 85 GNEDQIGTHDE----GIRCIEYSYEVGCVISGSWDK----TIKFWDPRNKVVVGTF--DQGKKV--YCMDVSGNRLVVGT 152 (323)
T ss_pred CcceeeccCCC----ceEEEEeeccCCeEEEcccCc----cEEEEecccccccccc--ccCceE--EEEeccCCEEEEee
Confidence 86543222222 22332 223456666655554 5777787651111111 001100 12223444444322
Q ss_pred CCCCeEEEEEeecCe
Q 003792 243 TTRSILVTVSFKNRK 257 (795)
Q Consensus 243 ~~~~~L~v~~l~sg~ 257 (795)
.+...++.||.+-.
T Consensus 153 -~~r~v~iyDLRn~~ 166 (323)
T KOG1036|consen 153 -SDRKVLIYDLRNLD 166 (323)
T ss_pred -cCceEEEEEccccc
Confidence 13567888887644
No 122
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=77.65 E-value=1.2e+02 Score=33.65 Aligned_cols=139 Identities=18% Similarity=0.168 Sum_probs=70.7
Q ss_pred ccCCeEEEEeCCCCcEeEEEeccCccccCCceeccccccccCCCeEEEEe--CCEEEEEECCCCc--------------E
Q 003792 103 SDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSS--KGCLHAVSSIDGE--------------I 166 (795)
Q Consensus 103 ~~g~~v~A~d~~tG~llWe~~~~~~~~s~~~~~~~~~~~~~~~~~V~V~~--~g~l~ald~~tG~--------------~ 166 (795)
+.+..+.+|+..+|.-+-.++...+=. . ++ .+..|+.++... +.+|+.--.++++ +
T Consensus 212 srD~tik~We~~tg~cv~t~~~h~ewv-r---~v----~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci 283 (406)
T KOG0295|consen 212 SRDNTIKAWECDTGYCVKTFPGHSEWV-R---MV----RVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECI 283 (406)
T ss_pred ccccceeEEecccceeEEeccCchHhE-E---EE----EecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEE
Confidence 446789999999998887777665422 1 11 122234444431 3344433333331 1
Q ss_pred EEEEeccCcceeeeeEEEEecCCEEEEEEecCCceeEEEEEEcCCCceeeeeeeeccCCcccceEEecCcE-EEEEECCC
Q 003792 167 LWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAFSGGFVGDVALVSSDT-LVTLDTTR 245 (795)
Q Consensus 167 ~W~~~~~~~~~~~~~vv~s~~~~~Vyvv~~~g~~~~~v~ald~~tG~~~w~~~v~~~~~~~~~~~~vg~~~-lv~~d~~~ 245 (795)
.|......+.+.-+. ++.+++.+.+.+.... .+-..|..||..+-+.. +-...+.+..+-.++.+ +-|+| +
T Consensus 284 ~wap~~~~~~i~~at--~~~~~~~~l~s~SrDk---tIk~wdv~tg~cL~tL~-ghdnwVr~~af~p~Gkyi~ScaD--D 355 (406)
T KOG0295|consen 284 AWAPESSYPSISEAT--GSTNGGQVLGSGSRDK---TIKIWDVSTGMCLFTLV-GHDNWVRGVAFSPGGKYILSCAD--D 355 (406)
T ss_pred EecccccCcchhhcc--CCCCCccEEEeecccc---eEEEEeccCCeEEEEEe-cccceeeeeEEcCCCeEEEEEec--C
Confidence 233222211110000 0112334444333322 67888999998876653 22233433222223443 44565 7
Q ss_pred CeEEEEEeecCe
Q 003792 246 SILVTVSFKNRK 257 (795)
Q Consensus 246 ~~L~v~~l~sg~ 257 (795)
++|++-|+++++
T Consensus 356 ktlrvwdl~~~~ 367 (406)
T KOG0295|consen 356 KTLRVWDLKNLQ 367 (406)
T ss_pred CcEEEEEeccce
Confidence 899999999987
No 123
>PRK00178 tolB translocation protein TolB; Provisional
Probab=77.43 E-value=1.4e+02 Score=34.04 Aligned_cols=186 Identities=15% Similarity=0.159 Sum_probs=88.7
Q ss_pred EEEEEeCCC------EEEEEECcCCccceEEEcCCcceeeeeee-eeCCEEEEEEcc--CCeEEEEeCCCCcEeEEEecc
Q 003792 55 RVVVSTEEN------VIASLDLRHGEIFWRHVLGINDVVDGIDI-ALGKYVITLSSD--GSTLRAWNLPDGQMVWESFLR 125 (795)
Q Consensus 55 ~v~vat~~g------~l~ALn~~tG~ivWR~~l~~~~~i~~l~~-~~g~~~V~Vs~~--g~~v~A~d~~tG~llWe~~~~ 125 (795)
.+|+.+..+ .|...|.+.+. ..+ .+.....+..... ..|+.++|++.. ...|+.||..+|+..--....
T Consensus 165 ia~v~~~~~~~~~~~~l~~~d~~g~~-~~~-l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~ 242 (430)
T PRK00178 165 ILYVTAERFSVNTRYTLQRSDYDGAR-AVT-LLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFE 242 (430)
T ss_pred EEEEEeeCCCCCcceEEEEECCCCCC-ceE-EecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCC
Confidence 466654322 47777875443 322 2222222221111 256667777643 357999999999764322222
Q ss_pred CccccCCceeccccccccCCCeEEE-Ee-C--CEEEEEECCCCcEEEEEeccCcceeeeeEEEEecCCEEEEEEecCCce
Q 003792 126 GSKHSKPLLLVPTNLKVDKDSLILV-SS-K--GCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQ 201 (795)
Q Consensus 126 ~~~~s~~~~~~~~~~~~~~~~~V~V-~~-~--g~l~ald~~tG~~~W~~~~~~~~~~~~~vv~s~~~~~Vyvv~~~g~~~ 201 (795)
+.. ..+...+ + ++.+++ .. + ..|+.+|..+|+..--........ ....+.++..+++.+..++ .
T Consensus 243 g~~--~~~~~Sp-----D-G~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~---~~~~spDg~~i~f~s~~~g-~ 310 (430)
T PRK00178 243 GLN--GAPAWSP-----D-GSKLAFVLSKDGNPEIYVMDLASRQLSRVTNHPAIDT---EPFWGKDGRTLYFTSDRGG-K 310 (430)
T ss_pred CCc--CCeEECC-----C-CCEEEEEEccCCCceEEEEECCCCCeEEcccCCCCcC---CeEECCCCCEEEEEECCCC-C
Confidence 111 1112222 2 233433 32 3 379999999887542111111111 1112345556665553322 2
Q ss_pred eEEEEEEcCCCceeeeeeeeccCCcccceEE-ecCcEEEEEECCCC--eEEEEEeecCe
Q 003792 202 FHAYQINAMNGELLNHETAAFSGGFVGDVAL-VSSDTLVTLDTTRS--ILVTVSFKNRK 257 (795)
Q Consensus 202 ~~v~ald~~tG~~~w~~~v~~~~~~~~~~~~-vg~~~lv~~d~~~~--~L~v~~l~sg~ 257 (795)
..++.+|+.+|+...- . ........+.+ .+++.+++.....+ .++..|+.++.
T Consensus 311 ~~iy~~d~~~g~~~~l-t--~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~ 366 (430)
T PRK00178 311 PQIYKVNVNGGRAERV-T--FVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGS 366 (430)
T ss_pred ceEEEEECCCCCEEEe-e--cCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCC
Confidence 3678889888875321 1 11111111222 23445555543333 57778887765
No 124
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=77.18 E-value=1.4e+02 Score=34.89 Aligned_cols=113 Identities=14% Similarity=0.018 Sum_probs=79.5
Q ss_pred CEEEEEeCCCEEEEEECcCCccceEEEcCCcc-eeeeeeeeeCCEEEEEEccCCeEEEEeCCCCcEeEEEeccCccccCC
Q 003792 54 KRVVVSTEENVIASLDLRHGEIFWRHVLGIND-VVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKP 132 (795)
Q Consensus 54 ~~v~vat~~g~l~ALn~~tG~ivWR~~l~~~~-~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~~~~~~~s~~ 132 (795)
..++.++..|-+..++...|++-|+...+... .+....-...-+.++-++.+.++--|+..+++..=.+....+.. ..
T Consensus 71 ~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~-~s 149 (541)
T KOG4547|consen 71 SMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLV-SS 149 (541)
T ss_pred eEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCcc-ce
Confidence 34788899999999999999999998765442 22211001222455534445799999999999888887766554 33
Q ss_pred ceeccccccccCCCeEEEEeCCEEEEEECCCCcEEEEEeccC
Q 003792 133 LLLVPTNLKVDKDSLILVSSKGCLHAVSSIDGEILWTRDFAA 174 (795)
Q Consensus 133 ~~~~~~~~~~~~~~~V~V~~~g~l~ald~~tG~~~W~~~~~~ 174 (795)
+.+.+ ++.+++...+++-.+|.++++++=++.--.
T Consensus 150 l~is~-------D~~~l~~as~~ik~~~~~~kevv~~ftgh~ 184 (541)
T KOG4547|consen 150 LCISP-------DGKILLTASRQIKVLDIETKEVVITFTGHG 184 (541)
T ss_pred EEEcC-------CCCEEEeccceEEEEEccCceEEEEecCCC
Confidence 33333 455666678899999999999998886544
No 125
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=76.94 E-value=1.2e+02 Score=33.28 Aligned_cols=112 Identities=11% Similarity=0.116 Sum_probs=54.4
Q ss_pred CeEEEEeCCCCcEeEEEeccCcc-ccCCceeccccccccCCCeEEEEeC--------CEEEEEECCCCcEEEEEeccCcc
Q 003792 106 STLRAWNLPDGQMVWESFLRGSK-HSKPLLLVPTNLKVDKDSLILVSSK--------GCLHAVSSIDGEILWTRDFAAES 176 (795)
Q Consensus 106 ~~v~A~d~~tG~llWe~~~~~~~-~s~~~~~~~~~~~~~~~~~V~V~~~--------g~l~ald~~tG~~~W~~~~~~~~ 176 (795)
..+..||+.+. .|+..-.-+. ...... ...-++.++|.++ ..+..++....+-.|+.-.+.+.
T Consensus 168 ~~v~~YDp~t~--~W~~~~~~p~~~r~~~~------~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~~ 239 (346)
T TIGR03547 168 KNVLSYDPSTN--QWRNLGENPFLGTAGSA------IVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLPP 239 (346)
T ss_pred ceEEEEECCCC--ceeECccCCCCcCCCce------EEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCCCC
Confidence 35788888765 5876432111 000111 1112466777531 13455666556677986544321
Q ss_pred e--e-e---eeEEEEecCCEEEEEEecCC-------------------ceeEEEEEEcCCCceeeeeeeeccCCcc
Q 003792 177 V--E-V---QQVIQLDESDQIYVVGYAGS-------------------SQFHAYQINAMNGELLNHETAAFSGGFV 227 (795)
Q Consensus 177 ~--~-~---~~vv~s~~~~~Vyvv~~~g~-------------------~~~~v~ald~~tG~~~w~~~v~~~~~~~ 227 (795)
- . + ....-..-++.||++|-... ....+.++|+.+. .|+..-..|....
T Consensus 240 ~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~--~W~~~~~lp~~~~ 313 (346)
T TIGR03547 240 PKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNG--KWSKVGKLPQGLA 313 (346)
T ss_pred CCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCC--cccccCCCCCCce
Confidence 0 0 0 01101245889999875310 0013556777765 4776544554433
No 126
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=76.32 E-value=48 Score=37.94 Aligned_cols=93 Identities=17% Similarity=0.254 Sum_probs=58.9
Q ss_pred eeEEEeccCceee-eeeeeeccCCCEEEEEeCCCEEEEEECcCCccceEEEcCCcc-eeeeeee---eeCC--EEEEEEc
Q 003792 31 MDWHQQYIGKVKH-AVFHTQKTGRKRVVVSTEENVIASLDLRHGEIFWRHVLGIND-VVDGIDI---ALGK--YVITLSS 103 (795)
Q Consensus 31 ~dW~~~~vG~~~~-~~f~~~~~~~~~v~vat~~g~l~ALn~~tG~ivWR~~l~~~~-~i~~l~~---~~g~--~~V~Vs~ 103 (795)
.||...+ |...- -...+-......|+|..+.+ |++|+. +|+++|..+|+-.. ....+.. ..++ ..+.|++
T Consensus 231 ~dWs~nl-GE~~l~i~v~~~~~~~~~IvvLger~-Lf~l~~-~G~l~~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV~t 307 (418)
T PF14727_consen 231 PDWSFNL-GEQALDIQVVRFSSSESDIVVLGERS-LFCLKD-NGSLRFQKRLDYNPSCFCPYRVPWYNEPSTRLNLLVGT 307 (418)
T ss_pred ceeEEEC-CceeEEEEEEEcCCCCceEEEEecce-EEEEcC-CCeEEEEEecCCceeeEEEEEeecccCCCCceEEEEEe
Confidence 8999864 76541 11111111244578887665 899997 79999999997652 1111211 1111 2466677
Q ss_pred cCCeEEEEeCCCCcEeEEEeccCcc
Q 003792 104 DGSTLRAWNLPDGQMVWESFLRGSK 128 (795)
Q Consensus 104 ~g~~v~A~d~~tG~llWe~~~~~~~ 128 (795)
+.+.+.-+ .+.+++|...+....
T Consensus 308 ~t~~LlVy--~d~~L~WsA~l~~~P 330 (418)
T PF14727_consen 308 HTGTLLVY--EDTTLVWSAQLPHVP 330 (418)
T ss_pred cCCeEEEE--eCCeEEEecCCCCCC
Confidence 77799998 478999999986443
No 127
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=75.90 E-value=22 Score=40.45 Aligned_cols=142 Identities=11% Similarity=0.128 Sum_probs=85.9
Q ss_pred EEEEEE-ccCCeEEEEeCCC-CcEeEEEeccCccccCCceeccccccccCCCeEEE--EeCCEEEEEECCCCcEEEEEec
Q 003792 97 YVITLS-SDGSTLRAWNLPD-GQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILV--SSKGCLHAVSSIDGEILWTRDF 172 (795)
Q Consensus 97 ~~V~Vs-~~g~~v~A~d~~t-G~llWe~~~~~~~~s~~~~~~~~~~~~~~~~~V~V--~~~g~l~ald~~tG~~~W~~~~ 172 (795)
+.+++| +.++.|..||.-+ |+.+=.+......+ .++..- ..+.=|. ..|..|.--|.+||++.=++..
T Consensus 227 ~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~V-rd~~~s-------~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~ 298 (503)
T KOG0282|consen 227 GHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPV-RDASFN-------NCGTSFLSASFDRFLKLWDTETGQVLSRFHL 298 (503)
T ss_pred eeEEEecCCCceEEEEEEecCcceehhhhcchhhh-hhhhcc-------ccCCeeeeeecceeeeeeccccceEEEEEec
Confidence 455555 4578999999987 88887777766544 232221 1333333 3599999999999999999887
Q ss_pred cCcceeeeeEE-EEecCCEEEEEEecCCceeEEEEEEcCCCceeeeeeeeccCCcccceEEe-cCcEEEEEECCCCeEEE
Q 003792 173 AAESVEVQQVI-QLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAFSGGFVGDVALV-SSDTLVTLDTTRSILVT 250 (795)
Q Consensus 173 ~~~~~~~~~vv-~s~~~~~Vyvv~~~g~~~~~v~ald~~tG~~~w~~~v~~~~~~~~~~~~v-g~~~lv~~d~~~~~L~v 250 (795)
..... ++ .-.++..+|++|...+ ++...|..+|+++.++.-...... +..|+ ++..++.. ++.+++.+
T Consensus 299 ~~~~~----cvkf~pd~~n~fl~G~sd~---ki~~wDiRs~kvvqeYd~hLg~i~--~i~F~~~g~rFiss-SDdks~ri 368 (503)
T KOG0282|consen 299 DKVPT----CVKFHPDNQNIFLVGGSDK---KIRQWDIRSGKVVQEYDRHLGAIL--DITFVDEGRRFISS-SDDKSVRI 368 (503)
T ss_pred CCCce----eeecCCCCCcEEEEecCCC---cEEEEeccchHHHHHHHhhhhhee--eeEEccCCceEeee-ccCccEEE
Confidence 65322 22 1123435666554433 899999999999988742222211 34444 33344333 34456655
Q ss_pred EEeecC
Q 003792 251 VSFKNR 256 (795)
Q Consensus 251 ~~l~sg 256 (795)
-+...+
T Consensus 369 We~~~~ 374 (503)
T KOG0282|consen 369 WENRIP 374 (503)
T ss_pred EEcCCC
Confidence 544433
No 128
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=75.50 E-value=68 Score=39.47 Aligned_cols=119 Identities=12% Similarity=0.086 Sum_probs=73.9
Q ss_pred CCCEEEEEeCCCEEEEEECcCCccceEEEcCCcceeeeeeeeeCCEEEEEEccCCeEEEEeCCCCcEeEEEeccCcccc-
Q 003792 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHS- 130 (795)
Q Consensus 52 ~~~~v~vat~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~~~~~~~s- 130 (795)
+++.+..++++-.|-.+|..|+...=... +-..++.++.....+..+.++..+|.|+-||..+|.+.-....-.....
T Consensus 107 ~g~~iaagsdD~~vK~~~~~D~s~~~~lr-gh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~ 185 (933)
T KOG1274|consen 107 SGKMIAAGSDDTAVKLLNLDDSSQEKVLR-GHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEF 185 (933)
T ss_pred CCcEEEeecCceeEEEEeccccchheeec-ccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccc
Confidence 35568889999999999999987653321 1112343443334455666666678999999999998766554322210
Q ss_pred --CCceeccccccccCC-CeEEEE-eCCEEEEEECCCCcEEEEEeccC
Q 003792 131 --KPLLLVPTNLKVDKD-SLILVS-SKGCLHAVSSIDGEILWTRDFAA 174 (795)
Q Consensus 131 --~~~~~~~~~~~~~~~-~~V~V~-~~g~l~ald~~tG~~~W~~~~~~ 174 (795)
..+...+ .+..+ +..++. .++.|..++..+++.....+...
T Consensus 186 ~~s~i~~~~---aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~ 230 (933)
T KOG1274|consen 186 ILSRICTRL---AWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKL 230 (933)
T ss_pred cccceeeee---eecCCCCeEEeeccCCeEEEEccCCceeheeecccc
Confidence 0111111 22222 445454 68999999999888877776543
No 129
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=74.54 E-value=1.7e+02 Score=33.73 Aligned_cols=192 Identities=16% Similarity=0.161 Sum_probs=96.2
Q ss_pred eccCCCEEEEEeC---CCEEEEEECcCCccceEEEcCCcceeeeeeeeeCCEEEEEEccCCeEEEEeCCCCcEe-EEEec
Q 003792 49 QKTGRKRVVVSTE---ENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMV-WESFL 124 (795)
Q Consensus 49 ~~~~~~~v~vat~---~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~tG~ll-We~~~ 124 (795)
|...+++||..|+ -|.|++.|. +|+-+=||.-=..--...+ -..|+.+|+ +. +|.++.+|+++-++. -+..+
T Consensus 231 PmIV~~RvYFlsD~eG~GnlYSvdl-dGkDlrrHTnFtdYY~R~~-nsDGkrIvF-q~-~GdIylydP~td~lekldI~l 306 (668)
T COG4946 231 PMIVGERVYFLSDHEGVGNLYSVDL-DGKDLRRHTNFTDYYPRNA-NSDGKRIVF-QN-AGDIYLYDPETDSLEKLDIGL 306 (668)
T ss_pred ceEEcceEEEEecccCccceEEecc-CCchhhhcCCchhcccccc-CCCCcEEEE-ec-CCcEEEeCCCcCcceeeecCC
Confidence 5556889999997 478999998 6776666532111001111 135666776 54 457999999987653 12221
Q ss_pred cCccccCCceec-cc----cccccCCCeEEE-EeCCEEEEEECCCCcEEEEEeccCcc-eeeeeEEEEecCCEEEEEEec
Q 003792 125 RGSKHSKPLLLV-PT----NLKVDKDSLILV-SSKGCLHAVSSIDGEILWTRDFAAES-VEVQQVIQLDESDQIYVVGYA 197 (795)
Q Consensus 125 ~~~~~s~~~~~~-~~----~~~~~~~~~V~V-~~~g~l~ald~~tG~~~W~~~~~~~~-~~~~~vv~s~~~~~Vyvv~~~ 197 (795)
....-.....++ |+ ..+.. +++.++ .+.|+..-.+.-.|-.. +.+.+. ....+. ...++.+.+...+
T Consensus 307 pl~rk~k~~k~~~pskyledfa~~-~Gd~ia~VSRGkaFi~~~~~~~~i---qv~~~~~VrY~r~--~~~~e~~vigt~d 380 (668)
T COG4946 307 PLDRKKKQPKFVNPSKYLEDFAVV-NGDYIALVSRGKAFIMRPWDGYSI---QVGKKGGVRYRRI--QVDPEGDVIGTND 380 (668)
T ss_pred ccccccccccccCHHHhhhhhccC-CCcEEEEEecCcEEEECCCCCeeE---EcCCCCceEEEEE--ccCCcceEEeccC
Confidence 111000000010 10 01122 344444 47777777776555322 222211 112222 2334444444445
Q ss_pred CCceeEEEEEEcCCCceeeeeeeeccCCcccceEEe-cCcEEEEEECCCCeEEEEEeecCe
Q 003792 198 GSSQFHAYQINAMNGELLNHETAAFSGGFVGDVALV-SSDTLVTLDTTRSILVTVSFKNRK 257 (795)
Q Consensus 198 g~~~~~v~ald~~tG~~~w~~~v~~~~~~~~~~~~v-g~~~lv~~d~~~~~L~v~~l~sg~ 257 (795)
|. .+..+|..+|++..-. .+-+.-.++-+- ++..+++. .++..|.++|+.+|+
T Consensus 381 gD---~l~iyd~~~~e~kr~e---~~lg~I~av~vs~dGK~~vva-Ndr~el~vididngn 434 (668)
T COG4946 381 GD---KLGIYDKDGGEVKRIE---KDLGNIEAVKVSPDGKKVVVA-NDRFELWVIDIDNGN 434 (668)
T ss_pred Cc---eEEEEecCCceEEEee---CCccceEEEEEcCCCcEEEEE-cCceEEEEEEecCCC
Confidence 54 6788898898854222 111111112111 22334333 356789999999988
No 130
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=73.90 E-value=1.6e+02 Score=33.17 Aligned_cols=191 Identities=10% Similarity=0.156 Sum_probs=106.2
Q ss_pred CCCEEEEEeCC-CEEEEEECcCCccceEEEcCCcceeeeeeeeeCCEEEEEEcc---CCeEEEEeCCCCcEeEEEeccCc
Q 003792 52 GRKRVVVSTEE-NVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSD---GSTLRAWNLPDGQMVWESFLRGS 127 (795)
Q Consensus 52 ~~~~v~vat~~-g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~~---g~~v~A~d~~tG~llWe~~~~~~ 127 (795)
..+++|+.+.+ +.+.-+|.++=.+.=....... ..++.+...+..+||+.. .+.+..+|..++++.=+......
T Consensus 84 ~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~--P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~ 161 (381)
T COG3391 84 AGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLG--PVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNT 161 (381)
T ss_pred CCCeEEEecCCCCeEEEEcCcccceeeEeeeccC--CceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCC
Confidence 46679998865 8899998544333222222211 113323344556777543 57999999999997755544331
Q ss_pred cccCCceeccccccccCCCeEEEEe--CCEEEEEECCCCcEEEEEeccCcc----eeeeeEEEEecCCEEEEEEecCCce
Q 003792 128 KHSKPLLLVPTNLKVDKDSLILVSS--KGCLHAVSSIDGEILWTRDFAAES----VEVQQVIQLDESDQIYVVGYAGSSQ 201 (795)
Q Consensus 128 ~~s~~~~~~~~~~~~~~~~~V~V~~--~g~l~ald~~tG~~~W~~~~~~~~----~~~~~vv~s~~~~~Vyvv~~~g~~~ 201 (795)
.. .+.. ..+ ...+++.. ++.+..+| .++..+|+ ..+... ..|..+....++..+|+.... +..
T Consensus 162 P~----~~a~---~p~-g~~vyv~~~~~~~v~vi~-~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~-~~~ 230 (381)
T COG3391 162 PT----GVAV---DPD-GNKVYVTNSDDNTVSVID-TSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDG-SGS 230 (381)
T ss_pred cc----eEEE---CCC-CCeEEEEecCCCeEEEEe-CCCcceec-cccccccccCCCCceEEECCCCCEEEEEecc-CCC
Confidence 11 1211 122 34577764 89999999 55666675 332111 124444323466678875433 223
Q ss_pred eEEEEEEcCCCceeee-eeeeccCCcccceEEe-cCcEEEEEECCCCeEEEEEeecCe
Q 003792 202 FHAYQINAMNGELLNH-ETAAFSGGFVGDVALV-SSDTLVTLDTTRSILVTVSFKNRK 257 (795)
Q Consensus 202 ~~v~ald~~tG~~~w~-~~v~~~~~~~~~~~~v-g~~~lv~~d~~~~~L~v~~l~sg~ 257 (795)
..+..+|..+|...+. ..+... ...+ ..+. .+..++..+...+.+.++|..+..
T Consensus 231 ~~v~~id~~~~~v~~~~~~~~~~-~~~~-v~~~p~g~~~yv~~~~~~~V~vid~~~~~ 286 (381)
T COG3391 231 NNVLKIDTATGNVTATDLPVGSG-APRG-VAVDPAGKAAYVANSQGGTVSVIDGATDR 286 (381)
T ss_pred ceEEEEeCCCceEEEeccccccC-CCCc-eeECCCCCEEEEEecCCCeEEEEeCCCCc
Confidence 4789999999999877 322221 1111 1111 233444444445778888877655
No 131
>PLN02193 nitrile-specifier protein
Probab=73.48 E-value=1.3e+02 Score=35.10 Aligned_cols=135 Identities=15% Similarity=0.120 Sum_probs=68.6
Q ss_pred CCEEEEEeC------CCEEEEEECcCCccceEEEcCCc---ceeeeee-eeeCCEEEEEEccC-----CeEEEEeCCCCc
Q 003792 53 RKRVVVSTE------ENVIASLDLRHGEIFWRHVLGIN---DVVDGID-IALGKYVITLSSDG-----STLRAWNLPDGQ 117 (795)
Q Consensus 53 ~~~v~vat~------~g~l~ALn~~tG~ivWR~~l~~~---~~i~~l~-~~~g~~~V~Vs~~g-----~~v~A~d~~tG~ 117 (795)
+++||+... .+.+.++|+++. .|++..+.. ..-.... ...++.+++++|.+ ..+..+|+.+.
T Consensus 228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~--~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~- 304 (470)
T PLN02193 228 GSTLYVFGGRDASRQYNGFYSFDTTTN--EWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDK- 304 (470)
T ss_pred CCEEEEECCCCCCCCCccEEEEECCCC--EEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCC-
Confidence 677888664 257999999886 699864431 1111111 23455555556532 34788998875
Q ss_pred EeEEEeccCccccCCceeccccccccCCCeEEEEe--C----CEEEEEECCCCcEEEEEeccCcce-eee-eEEEEecCC
Q 003792 118 MVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSS--K----GCLHAVSSIDGEILWTRDFAAESV-EVQ-QVIQLDESD 189 (795)
Q Consensus 118 llWe~~~~~~~~s~~~~~~~~~~~~~~~~~V~V~~--~----g~l~ald~~tG~~~W~~~~~~~~~-~~~-~vv~s~~~~ 189 (795)
.|+........ .. .-........ ++.+++.. + ..++++|..+. .|+.-.+.+.. .++ ....+.-++
T Consensus 305 -~W~~~~~~~~~-~~-~R~~~~~~~~-~gkiyviGG~~g~~~~dv~~yD~~t~--~W~~~~~~g~~P~~R~~~~~~~~~~ 378 (470)
T PLN02193 305 -KWFHCSTPGDS-FS-IRGGAGLEVV-QGKVWVVYGFNGCEVDDVHYYDPVQD--KWTQVETFGVRPSERSVFASAAVGK 378 (470)
T ss_pred -EEEeCCCCCCC-CC-CCCCcEEEEE-CCcEEEEECCCCCccCceEEEECCCC--EEEEeccCCCCCCCcceeEEEEECC
Confidence 58753221100 00 0000000112 45566653 2 56889998875 48765432111 011 111123567
Q ss_pred EEEEEEe
Q 003792 190 QIYVVGY 196 (795)
Q Consensus 190 ~Vyvv~~ 196 (795)
.+|+.+-
T Consensus 379 ~iyv~GG 385 (470)
T PLN02193 379 HIVIFGG 385 (470)
T ss_pred EEEEECC
Confidence 8887764
No 132
>PRK02888 nitrous-oxide reductase; Validated
Probab=72.87 E-value=1.2e+02 Score=36.41 Aligned_cols=141 Identities=12% Similarity=0.130 Sum_probs=79.3
Q ss_pred EEEEEeC-CCEEEEEECcCCccceEEEcCCcceeeeeeeeeCCEEEEEEc----cCCeEEEEeCCCCcEeEEEeccCccc
Q 003792 55 RVVVSTE-ENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSS----DGSTLRAWNLPDGQMVWESFLRGSKH 129 (795)
Q Consensus 55 ~v~vat~-~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~----~g~~v~A~d~~tG~llWe~~~~~~~~ 129 (795)
.++..++ .|.+.++|+++-++.|+...+.. .+......++..++++. .|..+...++++-. |-..+.-...
T Consensus 206 ~l~~~~ey~~~vSvID~etmeV~~qV~Vdgn--pd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d--~~vvfni~~i 281 (635)
T PRK02888 206 DLDDPKKYRSLFTAVDAETMEVAWQVMVDGN--LDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERD--WVVVFNIARI 281 (635)
T ss_pred EeecccceeEEEEEEECccceEEEEEEeCCC--cccceECCCCCEEEEeccCcccCcceeeeccccCc--eEEEEchHHH
Confidence 4555544 48999999999999999998765 23232234556777663 24566666665444 3333322111
Q ss_pred cCCceeccccccccCCCeEEEEeCCEEEEEECCC----C-cEEEEEeccCcceeeeeEEEEecCCEEEEEEecCCceeEE
Q 003792 130 SKPLLLVPTNLKVDKDSLILVSSKGCLHAVSSID----G-EILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHA 204 (795)
Q Consensus 130 s~~~~~~~~~~~~~~~~~V~V~~~g~l~ald~~t----G-~~~W~~~~~~~~~~~~~vv~s~~~~~Vyvv~~~g~~~~~v 204 (795)
...+. + ++..++ .+++|..+|..+ | ++.=....+ .. |-.+-.+.++..+|+.+--.. .+
T Consensus 282 ---ea~vk-----d-GK~~~V-~gn~V~VID~~t~~~~~~~v~~yIPVG--Ks-PHGV~vSPDGkylyVanklS~---tV 345 (635)
T PRK02888 282 ---EEAVK-----A-GKFKTI-GGSKVPVVDGRKAANAGSALTRYVPVP--KN-PHGVNTSPDGKYFIANGKLSP---TV 345 (635)
T ss_pred ---HHhhh-----C-CCEEEE-CCCEEEEEECCccccCCcceEEEEECC--CC-ccceEECCCCCEEEEeCCCCC---cE
Confidence 01111 1 344444 577899999988 4 333333333 22 334432345555665443222 68
Q ss_pred EEEEcCCCcee
Q 003792 205 YQINAMNGELL 215 (795)
Q Consensus 205 ~ald~~tG~~~ 215 (795)
..+|.++-+..
T Consensus 346 SVIDv~k~k~~ 356 (635)
T PRK02888 346 TVIDVRKLDDL 356 (635)
T ss_pred EEEEChhhhhh
Confidence 88888876653
No 133
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=71.94 E-value=1.8e+02 Score=32.82 Aligned_cols=157 Identities=15% Similarity=0.191 Sum_probs=92.6
Q ss_pred cCCCEEEEEeC---CCEEEEEECcCCccceEEEcCCcceeeeeeeeeCCEEEEEEc-cCCeEEEEeCCCCcEeEEEeccC
Q 003792 51 TGRKRVVVSTE---ENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSS-DGSTLRAWNLPDGQMVWESFLRG 126 (795)
Q Consensus 51 ~~~~~v~vat~---~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~-~g~~v~A~d~~tG~llWe~~~~~ 126 (795)
.+++.+||+.. ++.+..+|+.++++.=....+.. . .+..+...+..+++.. ..+.+..+| .++..+|+ ....
T Consensus 125 ~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~-P-~~~a~~p~g~~vyv~~~~~~~v~vi~-~~~~~v~~-~~~~ 200 (381)
T COG3391 125 PDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNT-P-TGVAVDPDGNKVYVTNSDDNTVSVID-TSGNSVVR-GSVG 200 (381)
T ss_pred CCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCC-c-ceEEECCCCCeEEEEecCCCeEEEEe-CCCcceec-cccc
Confidence 34778999988 68999999999988766444332 1 2232233444555544 467999999 46777776 3211
Q ss_pred ccccCCceeccccccccC-CCeEEEEe--C--CEEEEEECCCCcEEEE-EeccCcceeeeeEEEEecCCEEEEEEecCCc
Q 003792 127 SKHSKPLLLVPTNLKVDK-DSLILVSS--K--GCLHAVSSIDGEILWT-RDFAAESVEVQQVIQLDESDQIYVVGYAGSS 200 (795)
Q Consensus 127 ~~~s~~~~~~~~~~~~~~-~~~V~V~~--~--g~l~ald~~tG~~~W~-~~~~~~~~~~~~vv~s~~~~~Vyvv~~~g~~ 200 (795)
... ...-.|....++. +..++|.. + +.+..+|..+|.+.|. ...... . +..+.....+..+|+....++
T Consensus 201 ~~~--~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~-~~~v~~~p~g~~~yv~~~~~~- 275 (381)
T COG3391 201 SLV--GVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG-A-PRGVAVDPAGKAAYVANSQGG- 275 (381)
T ss_pred ccc--ccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC-C-CCceeECCCCCEEEEEecCCC-
Confidence 111 0000000001222 34577752 3 6999999999999887 433332 1 222322346677777654433
Q ss_pred eeEEEEEEcCCCceeeee
Q 003792 201 QFHAYQINAMNGELLNHE 218 (795)
Q Consensus 201 ~~~v~ald~~tG~~~w~~ 218 (795)
.+..+|..+.......
T Consensus 276 --~V~vid~~~~~v~~~~ 291 (381)
T COG3391 276 --TVSVIDGATDRVVKTG 291 (381)
T ss_pred --eEEEEeCCCCceeeee
Confidence 7888998888777654
No 134
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=71.92 E-value=1.7e+02 Score=32.72 Aligned_cols=149 Identities=14% Similarity=0.040 Sum_probs=72.4
Q ss_pred cCCCEEEEEeCC---CEEEEEECcCCccceEEEcCCcceeeeeee-eeCCEEEEEEcc--CCeEEEEeCCCCcEeEEEec
Q 003792 51 TGRKRVVVSTEE---NVIASLDLRHGEIFWRHVLGINDVVDGIDI-ALGKYVITLSSD--GSTLRAWNLPDGQMVWESFL 124 (795)
Q Consensus 51 ~~~~~v~vat~~---g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~-~~g~~~V~Vs~~--g~~v~A~d~~tG~llWe~~~ 124 (795)
++++.|++.+.. ..|+.+|.++|+..--...... ...... ..++.+++.... ...++.||..+|... .+
T Consensus 199 pdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~--~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~---~l 273 (417)
T TIGR02800 199 PDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGM--NGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT---RL 273 (417)
T ss_pred CCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCC--ccceEECCCCCEEEEEECCCCCccEEEEECCCCCEE---EC
Confidence 445556555533 5799999999975432222211 111111 234455554432 246999999888642 22
Q ss_pred cCc-cccCCceeccccccccCCCeEEEEe----CCEEEEEECCCCcEEEEEeccCcceeeeeEEEEecCCEEEEEEecCC
Q 003792 125 RGS-KHSKPLLLVPTNLKVDKDSLILVSS----KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGS 199 (795)
Q Consensus 125 ~~~-~~s~~~~~~~~~~~~~~~~~V~V~~----~g~l~ald~~tG~~~W~~~~~~~~~~~~~vv~s~~~~~Vyvv~~~g~ 199 (795)
... .....+... .+ ++.+++.+ ...|+.+|..+|+..--. ...... ..+..+..+..+++.+.. +
T Consensus 274 ~~~~~~~~~~~~s-----~d-g~~l~~~s~~~g~~~iy~~d~~~~~~~~l~-~~~~~~--~~~~~spdg~~i~~~~~~-~ 343 (417)
T TIGR02800 274 TNGPGIDTEPSWS-----PD-GKSIAFTSDRGGSPQIYMMDADGGEVRRLT-FRGGYN--ASPSWSPDGDLIAFVHRE-G 343 (417)
T ss_pred CCCCCCCCCEEEC-----CC-CCEEEEEECCCCCceEEEEECCCCCEEEee-cCCCCc--cCeEECCCCCEEEEEEcc-C
Confidence 111 110111111 12 23344332 237999998888743211 111111 112112344455554433 2
Q ss_pred ceeEEEEEEcCCCce
Q 003792 200 SQFHAYQINAMNGEL 214 (795)
Q Consensus 200 ~~~~v~ald~~tG~~ 214 (795)
....++.+|+.+|..
T Consensus 344 ~~~~i~~~d~~~~~~ 358 (417)
T TIGR02800 344 GGFNIAVMDLDGGGE 358 (417)
T ss_pred CceEEEEEeCCCCCe
Confidence 345788889888754
No 135
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=70.81 E-value=2e+02 Score=32.98 Aligned_cols=59 Identities=8% Similarity=0.051 Sum_probs=33.9
Q ss_pred CCEEEEEEecCCceeEEEEEEcCCCceeeeeeeeccCCcccceEEe--cCcEEEEEECCCCeEEEEEeec
Q 003792 188 SDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAFSGGFVGDVALV--SSDTLVTLDTTRSILVTVSFKN 255 (795)
Q Consensus 188 ~~~Vyvv~~~g~~~~~v~ald~~tG~~~w~~~v~~~~~~~~~~~~v--g~~~lv~~d~~~~~L~v~~l~s 255 (795)
+.++|-++.+. .+-..|...|.++-.. ..|..+.. +.+ +...++|... .|.++..++..
T Consensus 188 ~~rl~TaS~D~----t~k~wdlS~g~LLlti--~fp~si~a--v~lDpae~~~yiGt~-~G~I~~~~~~~ 248 (476)
T KOG0646|consen 188 NARLYTASEDR----TIKLWDLSLGVLLLTI--TFPSSIKA--VALDPAERVVYIGTE-EGKIFQNLLFK 248 (476)
T ss_pred cceEEEecCCc----eEEEEEeccceeeEEE--ecCCccee--EEEcccccEEEecCC-cceEEeeehhc
Confidence 45677666554 5666788899888766 34444432 222 3334445443 46777777654
No 136
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=69.75 E-value=1.5e+02 Score=32.16 Aligned_cols=35 Identities=17% Similarity=0.173 Sum_probs=25.9
Q ss_pred eCCEEEEEEccCCeEEEEeCCCCcEeEEEeccCcc
Q 003792 94 LGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSK 128 (795)
Q Consensus 94 ~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~~~~~~ 128 (795)
.++..|+-.+.+.+|++||+++|+..-+.+....-
T Consensus 100 ~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~ 134 (338)
T KOG0265|consen 100 RDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSF 134 (338)
T ss_pred cCCCEEEEecCCceEEEEecccceeeehhccccce
Confidence 33444443455689999999999999998877643
No 137
>PRK04043 tolB translocation protein TolB; Provisional
Probab=68.84 E-value=2.2e+02 Score=32.63 Aligned_cols=186 Identities=10% Similarity=0.059 Sum_probs=89.3
Q ss_pred cCCCE-EEEEeC---CCEEEEEECcCCccceEEEcCCcceeeeeee-eeCCEEEEEEc--cCCeEEEEeCCCCcEeEEEe
Q 003792 51 TGRKR-VVVSTE---ENVIASLDLRHGEIFWRHVLGINDVVDGIDI-ALGKYVITLSS--DGSTLRAWNLPDGQMVWESF 123 (795)
Q Consensus 51 ~~~~~-v~vat~---~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~-~~g~~~V~Vs~--~g~~v~A~d~~tG~llWe~~ 123 (795)
+++++ +|+.+. ...|+.+|..+|+.. +....++....... +.|+.+++... ....++.+|..+|.. +.-
T Consensus 197 pDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~--~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~--~~L 272 (419)
T PRK04043 197 NKEQTAFYYTSYGERKPTLYKYNLYTGKKE--KIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTL--TQI 272 (419)
T ss_pred CCCCcEEEEEEccCCCCEEEEEECCCCcEE--EEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcE--EEc
Confidence 44453 555443 357999999998752 22222221111111 24556666543 235799999988863 222
Q ss_pred ccCccccCCceeccccccccCCCeEEEEe----CCEEEEEECCCCcE-EEEEeccCcceeeeeEEEEecCCEEEEEEecC
Q 003792 124 LRGSKHSKPLLLVPTNLKVDKDSLILVSS----KGCLHAVSSIDGEI-LWTRDFAAESVEVQQVIQLDESDQIYVVGYAG 198 (795)
Q Consensus 124 ~~~~~~s~~~~~~~~~~~~~~~~~V~V~~----~g~l~ald~~tG~~-~W~~~~~~~~~~~~~vv~s~~~~~Vyvv~~~g 198 (795)
...+.....+... .+ ++.++..+ ...|+.+|..+|+. +-.+. . ...+ .+ +..+..+.+.+...
T Consensus 273 T~~~~~d~~p~~S-----PD-G~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g--~~~~-~~--SPDG~~Ia~~~~~~ 340 (419)
T PRK04043 273 TNYPGIDVNGNFV-----ED-DKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-G--KNNS-SV--STYKNYIVYSSRET 340 (419)
T ss_pred ccCCCccCccEEC-----CC-CCEEEEEECCCCCceEEEEECCCCCeEeCccC-C--CcCc-eE--CCCCCEEEEEEcCC
Confidence 2222110122222 23 23344443 23899999999987 33322 1 1111 12 34555554444432
Q ss_pred C-----ceeEEEEEEcCCCceeeeeeeeccCCcccceEEe-cCcEEEEEECCC--CeEEEEEeecC
Q 003792 199 S-----SQFHAYQINAMNGELLNHETAAFSGGFVGDVALV-SSDTLVTLDTTR--SILVTVSFKNR 256 (795)
Q Consensus 199 ~-----~~~~v~ald~~tG~~~w~~~v~~~~~~~~~~~~v-g~~~lv~~d~~~--~~L~v~~l~sg 256 (795)
. ....++.+|+.+|+.. .+... +....+.+. ++..++.+.... ..|..+++...
T Consensus 341 ~~~~~~~~~~I~v~d~~~g~~~---~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~ 402 (419)
T PRK04043 341 NNEFGKNTFNLYLISTNSDYIR---RLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYN 402 (419)
T ss_pred CcccCCCCcEEEEEECCCCCeE---ECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCCC
Confidence 1 1247888899888742 11111 222233332 334444433222 24777777543
No 138
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=68.83 E-value=1.6e+02 Score=32.19 Aligned_cols=170 Identities=17% Similarity=0.268 Sum_probs=79.0
Q ss_pred CccceeeccccceeEEEeccCceeeeeeeeeccCCCEEEEEeCCCEEE-EEECcCCccceEEEcCC-cceeeeeeeeeCC
Q 003792 19 PSLSLYEDQVGLMDWHQQYIGKVKHAVFHTQKTGRKRVVVSTEENVIA-SLDLRHGEIFWRHVLGI-NDVVDGIDIALGK 96 (795)
Q Consensus 19 ~~~Al~edq~G~~dW~~~~vG~~~~~~f~~~~~~~~~v~vat~~g~l~-ALn~~tG~ivWR~~l~~-~~~i~~l~~~~g~ 96 (795)
...++|....|-..|+....+... ....-....++++++.+..|.++ ..| .|+-.|+..-.. ...+..+....++
T Consensus 122 ~~G~iy~T~DgG~tW~~~~~~~~g-s~~~~~r~~dG~~vavs~~G~~~~s~~--~G~~~w~~~~r~~~~riq~~gf~~~~ 198 (302)
T PF14870_consen 122 DRGAIYRTTDGGKTWQAVVSETSG-SINDITRSSDGRYVAVSSRGNFYSSWD--PGQTTWQPHNRNSSRRIQSMGFSPDG 198 (302)
T ss_dssp TT--EEEESSTTSSEEEEE-S-----EEEEEE-TTS-EEEEETTSSEEEEE---TT-SS-EEEE--SSS-EEEEEE-TTS
T ss_pred CCCcEEEeCCCCCCeeEcccCCcc-eeEeEEECCCCcEEEEECcccEEEEec--CCCccceEEccCccceehhceecCCC
Confidence 446889988888899986644332 22221223466666666666554 555 599999975543 2234433222333
Q ss_pred EEEEEEccCCeEEEEeCCCCcEeEEEeccCccccCCceeccccccccCCCeEEEEe-CCEEEEEECCCCcEEEEEeccCc
Q 003792 97 YVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSS-KGCLHAVSSIDGEILWTRDFAAE 175 (795)
Q Consensus 97 ~~V~Vs~~g~~v~A~d~~tG~llWe~~~~~~~~s~~~~~~~~~~~~~~~~~V~V~~-~g~l~ald~~tG~~~W~~~~~~~ 175 (795)
.+.. .+.|+.++-=+..+...-|+........ ....++. .....++.+++.. +|.|+. ..||-.-|+......
T Consensus 199 ~lw~-~~~Gg~~~~s~~~~~~~~w~~~~~~~~~-~~~~~ld--~a~~~~~~~wa~gg~G~l~~--S~DgGktW~~~~~~~ 272 (302)
T PF14870_consen 199 NLWM-LARGGQIQFSDDPDDGETWSEPIIPIKT-NGYGILD--LAYRPPNEIWAVGGSGTLLV--STDGGKTWQKDRVGE 272 (302)
T ss_dssp -EEE-EETTTEEEEEE-TTEEEEE---B-TTSS---S-EEE--EEESSSS-EEEEESTT-EEE--ESSTTSS-EE-GGGT
T ss_pred CEEE-EeCCcEEEEccCCCCccccccccCCccc-CceeeEE--EEecCCCCEEEEeCCccEEE--eCCCCccceECcccc
Confidence 3434 4467788888866777889886544311 1111111 0222246677764 554433 356677899876533
Q ss_pred ce--eeeeEEEEecCCEEEEEEecC
Q 003792 176 SV--EVQQVIQLDESDQIYVVGYAG 198 (795)
Q Consensus 176 ~~--~~~~vv~s~~~~~Vyvv~~~g 198 (795)
.. ..++++. ..+++-|+++..|
T Consensus 273 ~~~~n~~~i~f-~~~~~gf~lG~~G 296 (302)
T PF14870_consen 273 NVPSNLYRIVF-VNPDKGFVLGQDG 296 (302)
T ss_dssp TSSS---EEEE-EETTEEEEE-STT
T ss_pred CCCCceEEEEE-cCCCceEEECCCc
Confidence 22 3555553 4667888887666
No 139
>PF05567 Neisseria_PilC: Neisseria PilC beta-propeller domain; InterPro: IPR008707 This domain is found in several PilC protein sequences from Neisseria gonorrhoeae and Neisseria meningitidis. PilC is a phase-variable protein associated with pilus-mediated adherence of pathogenic Neisseria to target cells [].; PDB: 3HX6_A.
Probab=68.03 E-value=1.1e+02 Score=34.06 Aligned_cols=55 Identities=20% Similarity=0.250 Sum_probs=32.1
Q ss_pred eeEEEEEEcCC-Cceeeeeeeecc-CCcccceEEec---C---cEEEEEECCCCeEEEEEeecCe
Q 003792 201 QFHAYQINAMN-GELLNHETAAFS-GGFVGDVALVS---S---DTLVTLDTTRSILVTVSFKNRK 257 (795)
Q Consensus 201 ~~~v~ald~~t-G~~~w~~~v~~~-~~~~~~~~~vg---~---~~lv~~d~~~~~L~v~~l~sg~ 257 (795)
...++.+|++| |..+++..+... .+++. +.++. + ..+++.|. .|+++..|+.+..
T Consensus 180 ~~~lyi~d~~t~G~l~~~i~~~~~~~gl~~-~~~~D~d~DG~~D~vYaGDl-~GnlwR~dl~~~~ 242 (335)
T PF05567_consen 180 GAALYILDADTTGALIKKIDVPGGSGGLSS-PAVVDSDGDGYVDRVYAGDL-GGNLWRFDLSSAN 242 (335)
T ss_dssp -EEEEEEETTT---EEEEEEE--STT-EEE-EEEE-TTSSSEE-EEEEEET-TSEEEEEE--TTS
T ss_pred CcEEEEEECCCCCceEEEEecCCCCccccc-cEEEeccCCCeEEEEEEEcC-CCcEEEEECCCCC
Confidence 57899999999 999998765443 23333 33332 1 26778886 5999999997643
No 140
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=67.65 E-value=70 Score=36.85 Aligned_cols=116 Identities=13% Similarity=0.168 Sum_probs=74.7
Q ss_pred eCCEEEEEEccCCeEEEEeCCCCcEeEEEeccCccc-cCCceeccccccccCCCeEEEE-eCCEEEEEECCCCcEEEEEe
Q 003792 94 LGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKH-SKPLLLVPTNLKVDKDSLILVS-SKGCLHAVSSIDGEILWTRD 171 (795)
Q Consensus 94 ~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~~~~~~~-s~~~~~~~~~~~~~~~~~V~V~-~~g~l~ald~~tG~~~W~~~ 171 (795)
-++..++|+|...+|..||++.=.+.=...+..... +.++.+- .| .+..|.- ++|.+...|..+-.++=++.
T Consensus 475 pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~s-----pD-akvcFsccsdGnI~vwDLhnq~~Vrqfq 548 (705)
T KOG0639|consen 475 PDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAIS-----PD-AKVCFSCCSDGNIAVWDLHNQTLVRQFQ 548 (705)
T ss_pred CCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcC-----Cc-cceeeeeccCCcEEEEEcccceeeeccc
Confidence 455677779888899999999888877776665321 1222221 22 2333332 58888888888776666554
Q ss_pred ccCcceeeeeEEEE-ecCCEEEEEEecCCceeEEEEEEcCCCceeeeeeeec
Q 003792 172 FAAESVEVQQVIQL-DESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAF 222 (795)
Q Consensus 172 ~~~~~~~~~~vv~s-~~~~~Vyvv~~~g~~~~~v~ald~~tG~~~w~~~v~~ 222 (795)
--.. -..+++. ..+.+++-.|++. .|.|.|..+|+.+-|..+..
T Consensus 549 GhtD---GascIdis~dGtklWTGGlDn----tvRcWDlregrqlqqhdF~S 593 (705)
T KOG0639|consen 549 GHTD---GASCIDISKDGTKLWTGGLDN----TVRCWDLREGRQLQQHDFSS 593 (705)
T ss_pred CCCC---CceeEEecCCCceeecCCCcc----ceeehhhhhhhhhhhhhhhh
Confidence 3221 1234442 3466788776665 79999999999998886544
No 141
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=67.65 E-value=1.4e+02 Score=34.43 Aligned_cols=144 Identities=9% Similarity=0.109 Sum_probs=79.4
Q ss_pred CCEEEEEeCCCEEEEEECcCCccceEEEcCCcceeeeeeeeeCCEEE-EEEccCCeEEEEeCCCCcEeEEEecc-Ccccc
Q 003792 53 RKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVI-TLSSDGSTLRAWNLPDGQMVWESFLR-GSKHS 130 (795)
Q Consensus 53 ~~~v~vat~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V-~Vs~~g~~v~A~d~~tG~llWe~~~~-~~~~s 130 (795)
+..|-.++..|.|.-.+.+||.--=.+..+.+..+..++....+..+ ...+++|.|..||...-.+...+.-. ....
T Consensus 133 DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~- 211 (673)
T KOG4378|consen 133 DEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPC- 211 (673)
T ss_pred cceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCc-
Confidence 33455566778888888888876665555544444444444444433 33456789999998655555444321 2222
Q ss_pred CCceeccccccccCCCeEEEE--eCCEEEEEECCCCcEEEEEeccCcceeeeeEEEEecCCEEEEEEecCCceeEEEEEE
Q 003792 131 KPLLLVPTNLKVDKDSLILVS--SKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQIN 208 (795)
Q Consensus 131 ~~~~~~~~~~~~~~~~~V~V~--~~g~l~ald~~tG~~~W~~~~~~~~~~~~~vv~s~~~~~Vyvv~~~g~~~~~v~ald 208 (795)
.++.+.|. ...++|. .|.+++-+|..+-+..=+..... |...+.-...|...++|. ++.+++++|
T Consensus 212 ~gicfsps------ne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~----Plstvaf~~~G~~L~aG~---s~G~~i~YD 278 (673)
T KOG4378|consen 212 RGICFSPS------NEALLVSVGYDKKINIYDIRSQASTDRLTYSH----PLSTVAFSECGTYLCAGN---SKGELIAYD 278 (673)
T ss_pred CcceecCC------ccceEEEecccceEEEeecccccccceeeecC----CcceeeecCCceEEEeec---CCceEEEEe
Confidence 45555552 3345553 48999999865432221111111 222222234555555443 334899999
Q ss_pred cC
Q 003792 209 AM 210 (795)
Q Consensus 209 ~~ 210 (795)
+.
T Consensus 279 ~R 280 (673)
T KOG4378|consen 279 MR 280 (673)
T ss_pred cc
Confidence 85
No 142
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=67.46 E-value=26 Score=38.90 Aligned_cols=110 Identities=16% Similarity=0.239 Sum_probs=68.4
Q ss_pred ccCCCEEEEEeCCCEEEEEECcCCccceEEEcCCcceeeee-----eeeeCCEEEEEEccCCeEEEEeCCCCcEeEEEec
Q 003792 50 KTGRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGI-----DIALGKYVITLSSDGSTLRAWNLPDGQMVWESFL 124 (795)
Q Consensus 50 ~~~~~~v~vat~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l-----~~~~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~~ 124 (795)
+++++.|..++.+|.|-.-||++|+..=|---.-..-|.++ +..-....+.-++.++.+|-||..-|+.+-....
T Consensus 166 sPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsg 245 (480)
T KOG0271|consen 166 SPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSG 245 (480)
T ss_pred CCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEecc
Confidence 34566788888999999999999988766433332223322 1122333333345567999999999998877666
Q ss_pred cCccccCCceeccccccccCCCeEEEEe-CCEEEEEECCCCcEE
Q 003792 125 RGSKHSKPLLLVPTNLKVDKDSLILVSS-KGCLHAVSSIDGEIL 167 (795)
Q Consensus 125 ~~~~~s~~~~~~~~~~~~~~~~~V~V~~-~g~l~ald~~tG~~~ 167 (795)
....+ ..+ ...+++.++-.+ |+++...++.+|+..
T Consensus 246 HT~~V----TCv----rwGG~gliySgS~DrtIkvw~a~dG~~~ 281 (480)
T KOG0271|consen 246 HTASV----TCV----RWGGEGLIYSGSQDRTIKVWRALDGKLC 281 (480)
T ss_pred Cccce----EEE----EEcCCceEEecCCCceEEEEEccchhHH
Confidence 55433 122 223345555553 777777777776543
No 143
>PLN02153 epithiospecifier protein
Probab=67.32 E-value=2e+02 Score=31.61 Aligned_cols=196 Identities=12% Similarity=0.104 Sum_probs=95.8
Q ss_pred CCEEEEEeCC--------CEEEEEECcCCccceEEEcCCcc--ee--eeee-eeeCCEEEEEEccC-----CeEEEEeCC
Q 003792 53 RKRVVVSTEE--------NVIASLDLRHGEIFWRHVLGIND--VV--DGID-IALGKYVITLSSDG-----STLRAWNLP 114 (795)
Q Consensus 53 ~~~v~vat~~--------g~l~ALn~~tG~ivWR~~l~~~~--~i--~~l~-~~~g~~~V~Vs~~g-----~~v~A~d~~ 114 (795)
+++||+.... +.+..+|+.+. .|+..-.... .. .+.. +..++.+++++|.+ ..+..+|+.
T Consensus 32 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~--~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~ 109 (341)
T PLN02153 32 GDKLYSFGGELKPNEHIDKDLYVFDFNTH--TWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEKREFSDFYSYDTV 109 (341)
T ss_pred CCEEEEECCccCCCCceeCcEEEEECCCC--EEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCCCccCcEEEEECC
Confidence 6778885432 46899999886 5997543221 01 0111 24566666666631 257889987
Q ss_pred CCcEeEEEeccCccccCCceeccccccccCCCeEEEEeC-------------CEEEEEECCCCcEEEEEeccCcce-eee
Q 003792 115 DGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSSK-------------GCLHAVSSIDGEILWTRDFAAESV-EVQ 180 (795)
Q Consensus 115 tG~llWe~~~~~~~~s~~~~~~~~~~~~~~~~~V~V~~~-------------g~l~ald~~tG~~~W~~~~~~~~~-~~~ 180 (795)
+. .|+.-..-.....+.+.... .....++.++|.++ ..+.++|.++. .|+.-.+.+.. .+.
T Consensus 110 t~--~W~~~~~~~~~~~p~~R~~~-~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~--~W~~l~~~~~~~~~r 184 (341)
T PLN02153 110 KN--EWTFLTKLDEEGGPEARTFH-SMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADG--KWVQLPDPGENFEKR 184 (341)
T ss_pred CC--EEEEeccCCCCCCCCCceee-EEEEECCEEEEECCccCCCccCCCcccceEEEEECCCC--eEeeCCCCCCCCCCC
Confidence 64 58753211000000001110 01122466777531 14778888765 58853322110 010
Q ss_pred -eEEEEecCCEEEEEEec------CCc----eeEEEEEEcCCCceeeeeeee---ccCCccc-ceEEecCcEEEEEECC-
Q 003792 181 -QVIQLDESDQIYVVGYA------GSS----QFHAYQINAMNGELLNHETAA---FSGGFVG-DVALVSSDTLVTLDTT- 244 (795)
Q Consensus 181 -~vv~s~~~~~Vyvv~~~------g~~----~~~v~ald~~tG~~~w~~~v~---~~~~~~~-~~~~vg~~~lv~~d~~- 244 (795)
....+.-++.+|+++-. |+. .-.+.++|+.+.+ |+..-. .|..... .++++++.++++.-..
T Consensus 185 ~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~--W~~~~~~g~~P~~r~~~~~~~~~~~iyv~GG~~~ 262 (341)
T PLN02153 185 GGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGK--WTEVETTGAKPSARSVFAHAVVGKYIIIFGGEVW 262 (341)
T ss_pred CcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCc--EEeccccCCCCCCcceeeeEEECCEEEEECcccC
Confidence 01112357788887532 110 1257888987654 765321 2332222 3344455555543210
Q ss_pred ------------CCeEEEEEeecCe
Q 003792 245 ------------RSILVTVSFKNRK 257 (795)
Q Consensus 245 ------------~~~L~v~~l~sg~ 257 (795)
...+++.|+.+.+
T Consensus 263 ~~~~~~~~~~~~~n~v~~~d~~~~~ 287 (341)
T PLN02153 263 PDLKGHLGPGTLSNEGYALDTETLV 287 (341)
T ss_pred CccccccccccccccEEEEEcCccE
Confidence 1256777777665
No 144
>cd00028 B_lectin Bulb-type mannose-specific lectin. The domain contains a three-fold internal repeat (beta-prism architecture). The consensus sequence motif QXDXNXVXY is involved in alpha-D-mannose recognition. Lectins are carbohydrate-binding proteins which specifically recognize diverse carbohydrates and mediate a wide variety of biological processes, such as cell-cell and host-pathogen interactions, serum glycoprotein turnover, and innate immune responses.
Probab=67.31 E-value=40 Score=30.98 Aligned_cols=71 Identities=28% Similarity=0.471 Sum_probs=42.4
Q ss_pred CccceEEEcCCcceeeeeeeeeCCEEEEEEccCCeEEEEeCCCCcEeEEEeccCccccCCceeccccccccCCCeEEE-E
Q 003792 73 GEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILV-S 151 (795)
Q Consensus 73 G~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~~~~~~~s~~~~~~~~~~~~~~~~~V~V-~ 151 (795)
+.++|.-....+ ......+.+..+| .++..|. +|..+|...... .. ...+++ .
T Consensus 41 ~~~vW~snt~~~--------~~~~~~l~l~~dG-nLvl~~~-~g~~vW~S~~~~-~~---------------~~~~~~L~ 94 (116)
T cd00028 41 RTVVWVANRDNP--------SGSSCTLTLQSDG-NLVIYDG-SGTVVWSSNTTR-VN---------------GNYVLVLL 94 (116)
T ss_pred CeEEEECCCCCC--------CCCCEEEEEecCC-CeEEEcC-CCcEEEEecccC-CC---------------CceEEEEe
Confidence 678898655432 1112234445544 6777776 689999876543 11 122333 3
Q ss_pred eCCEEEEEECCCCcEEEEE
Q 003792 152 SKGCLHAVSSIDGEILWTR 170 (795)
Q Consensus 152 ~~g~l~ald~~tG~~~W~~ 170 (795)
.+|.|..++. +|+++|+-
T Consensus 95 ddGnlvl~~~-~~~~~W~S 112 (116)
T cd00028 95 DDGNLVLYDS-DGNFLWQS 112 (116)
T ss_pred CCCCEEEECC-CCCEEEcC
Confidence 6788887774 58999984
No 145
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=67.14 E-value=1.5e+02 Score=33.51 Aligned_cols=185 Identities=11% Similarity=0.070 Sum_probs=94.9
Q ss_pred CCEEEEEeCCCEEEEEECcCCccceEEEcCCc-ceeeeeeeeeCCEEEEEEccCCeEEEEeCCCCcEeEEEeccCccccC
Q 003792 53 RKRVVVSTEENVIASLDLRHGEIFWRHVLGIN-DVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSK 131 (795)
Q Consensus 53 ~~~v~vat~~g~l~ALn~~tG~ivWR~~l~~~-~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~~~~~~~s~ 131 (795)
...++.+|.++.+.--|..+++++ +.|... +.+.......+...|+=++.+.++--||...+.=.=+.. ..+.+ .
T Consensus 231 ~~~~iAas~d~~~r~Wnvd~~r~~--~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~c-n 306 (459)
T KOG0288|consen 231 NKHVIAASNDKNLRLWNVDSLRLR--HTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQC-N 306 (459)
T ss_pred CceEEeecCCCceeeeeccchhhh--hhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecccc-ccccc-c
Confidence 445778888887777776665543 223221 122222112233322213456788888886643321111 11111 1
Q ss_pred CceeccccccccCCCeEEEE--eCCEEEEEECCCCcEEEEEeccCcceeeeeEEEEecCCEEEEEEecCCceeEEEEEEc
Q 003792 132 PLLLVPTNLKVDKDSLILVS--SKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINA 209 (795)
Q Consensus 132 ~~~~~~~~~~~~~~~~V~V~--~~g~l~ald~~tG~~~W~~~~~~~~~~~~~vv~s~~~~~Vyvv~~~g~~~~~v~ald~ 209 (795)
++ ......++. .++.|...|..++..+-+.+..+... .+-.+.++..+...+.+. .+-.+|.
T Consensus 307 DI---------~~~~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vt---Sl~ls~~g~~lLsssRDd----tl~viDl 370 (459)
T KOG0288|consen 307 DI---------VCSISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVT---SLDLSMDGLELLSSSRDD----TLKVIDL 370 (459)
T ss_pred ce---------EecceeeeecccccceEEEeccCCceeeEeecCccee---eEeeccCCeEEeeecCCC----ceeeeec
Confidence 11 001111222 37889999999998888877655211 221122344444433333 4666787
Q ss_pred CCCceeeeeeeec---cCCcccceEEecCcEEEEEECCCCeEEEEEeecCee
Q 003792 210 MNGELLNHETAAF---SGGFVGDVALVSSDTLVTLDTTRSILVTVSFKNRKI 258 (795)
Q Consensus 210 ~tG~~~w~~~v~~---~~~~~~~~~~vg~~~lv~~d~~~~~L~v~~l~sg~~ 258 (795)
.|-++.-.++... .++.+..++-.++.++ ++-+.+|++++=++.+|++
T Consensus 371 Rt~eI~~~~sA~g~k~asDwtrvvfSpd~~Yv-aAGS~dgsv~iW~v~tgKl 421 (459)
T KOG0288|consen 371 RTKEIRQTFSAEGFKCASDWTRVVFSPDGSYV-AAGSADGSVYIWSVFTGKL 421 (459)
T ss_pred ccccEEEEeeccccccccccceeEECCCCcee-eeccCCCcEEEEEccCceE
Confidence 7777766664322 2333333333344454 4445679999999999884
No 146
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=66.91 E-value=67 Score=33.17 Aligned_cols=109 Identities=13% Similarity=0.021 Sum_probs=74.3
Q ss_pred CCEEEEEeC-CCEEEEEECcCCccceEEEcCCcceeeeeeeeeCCEEEEEEccCCeEEEEeCCCCcEeEEEeccCccccC
Q 003792 53 RKRVVVSTE-ENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSK 131 (795)
Q Consensus 53 ~~~v~vat~-~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~~~~~~~s~ 131 (795)
++++|..|- +|+-+-.|++|=+.+=|+..+..+ -++ ..++.-+.+|.....++-.|++|=.+.=+..+.....
T Consensus 100 gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~GeG--WgL--t~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~-- 173 (262)
T COG3823 100 GDYFYQLTWKEGVAFKYDADTLEELGRFSYEGEG--WGL--TSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGV-- 173 (262)
T ss_pred cceEEEEEeccceeEEEChHHhhhhcccccCCcc--eee--ecCCcceEeeCCceEEEecCHHHhhhcceEEEEECCe--
Confidence 677999886 588888999998888888776652 244 3444446656656789999999887776666543221
Q ss_pred CceeccccccccCCCeEEEE--eCCEEEEEECCCCcEE-EE
Q 003792 132 PLLLVPTNLKVDKDSLILVS--SKGCLHAVSSIDGEIL-WT 169 (795)
Q Consensus 132 ~~~~~~~~~~~~~~~~V~V~--~~g~l~ald~~tG~~~-W~ 169 (795)
++.-.+.....++.++.. ...++.++++++|+++ |-
T Consensus 174 --pv~~LNELE~VdG~lyANVw~t~~I~rI~p~sGrV~~wi 212 (262)
T COG3823 174 --PVSKLNELEWVDGELYANVWQTTRIARIDPDSGRVVAWI 212 (262)
T ss_pred --ecccccceeeeccEEEEeeeeecceEEEcCCCCcEEEEE
Confidence 122112223336778774 4889999999999976 54
No 147
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=66.75 E-value=75 Score=35.59 Aligned_cols=92 Identities=13% Similarity=0.204 Sum_probs=57.7
Q ss_pred CEEEEEEccCCeEEEEeCCCCcEeEEEeccCccccCCceeccccccccCCCeEEEE--eCCEEEEEECCCCcEEEEEecc
Q 003792 96 KYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVS--SKGCLHAVSSIDGEILWTRDFA 173 (795)
Q Consensus 96 ~~~V~Vs~~g~~v~A~d~~tG~llWe~~~~~~~~s~~~~~~~~~~~~~~~~~V~V~--~~g~l~ald~~tG~~~W~~~~~ 173 (795)
.+++.-+|.+..|..||..||.-+-+.....-.. .+ ....++..++. .|..++.+|..+|+++|+-...
T Consensus 144 ~NVLlsag~Dn~v~iWnv~tgeali~l~hpd~i~-----S~----sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~h 214 (472)
T KOG0303|consen 144 PNVLLSAGSDNTVSIWNVGTGEALITLDHPDMVY-----SM----SFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAH 214 (472)
T ss_pred hhhHhhccCCceEEEEeccCCceeeecCCCCeEE-----EE----EeccCCceeeeecccceeEEEcCCCCcEeeecccc
Confidence 3444435567899999999999887766332221 11 22335666675 3889999999999999998443
Q ss_pred CcceeeeeEEEEecCCEEEEEEecC
Q 003792 174 AESVEVQQVIQLDESDQIYVVGYAG 198 (795)
Q Consensus 174 ~~~~~~~~vv~s~~~~~Vyvv~~~g 198 (795)
.+.. +.+++. ..++.++.-|+..
T Consensus 215 eG~k-~~Raif-l~~g~i~tTGfsr 237 (472)
T KOG0303|consen 215 EGAK-PARAIF-LASGKIFTTGFSR 237 (472)
T ss_pred cCCC-cceeEE-eccCceeeecccc
Confidence 3322 334432 2444466655554
No 148
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=66.47 E-value=2.2e+02 Score=31.84 Aligned_cols=149 Identities=15% Similarity=0.153 Sum_probs=71.6
Q ss_pred eCCEEEEEEcc--CCeEEEEeCCCCcEeEEEeccCccccCCceeccccccccCCCeEEEE-e---CCEEEEEECCCCcEE
Q 003792 94 LGKYVITLSSD--GSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVS-S---KGCLHAVSSIDGEIL 167 (795)
Q Consensus 94 ~g~~~V~Vs~~--g~~v~A~d~~tG~llWe~~~~~~~~s~~~~~~~~~~~~~~~~~V~V~-~---~g~l~ald~~tG~~~ 167 (795)
.++.+++++.. ...++.||..+|+..-......... .+.+.+ + ++.+++. . ...|+.+|..+|+..
T Consensus 200 dg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~--~~~~sp-----D-g~~l~~~~~~~~~~~i~~~d~~~~~~~ 271 (417)
T TIGR02800 200 DGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNG--APAFSP-----D-GSKLAVSLSKDGNPDIYVMDLDGKQLT 271 (417)
T ss_pred CCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCcc--ceEECC-----C-CCEEEEEECCCCCccEEEEECCCCCEE
Confidence 45566666532 2579999999997654433332211 112222 2 2334443 2 346899998887643
Q ss_pred EEEeccCcceeeeeEEEEecCCEEEEEEecCCceeEEEEEEcCCCceeeeeeeeccCCcccceEE-ecCcEEEEEECCC-
Q 003792 168 WTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAFSGGFVGDVAL-VSSDTLVTLDTTR- 245 (795)
Q Consensus 168 W~~~~~~~~~~~~~vv~s~~~~~Vyvv~~~g~~~~~v~ald~~tG~~~w~~~v~~~~~~~~~~~~-vg~~~lv~~d~~~- 245 (795)
=-........ ....+..+..+++.+..++ ...++.+|+.+|+... +.....-...+.+ .++..+++.+...
T Consensus 272 ~l~~~~~~~~---~~~~s~dg~~l~~~s~~~g-~~~iy~~d~~~~~~~~---l~~~~~~~~~~~~spdg~~i~~~~~~~~ 344 (417)
T TIGR02800 272 RLTNGPGIDT---EPSWSPDGKSIAFTSDRGG-SPQIYMMDADGGEVRR---LTFRGGYNASPSWSPDGDLIAFVHREGG 344 (417)
T ss_pred ECCCCCCCCC---CEEECCCCCEEEEEECCCC-CceEEEEECCCCCEEE---eecCCCCccCeEECCCCCEEEEEEccCC
Confidence 1111111111 1111234455655444332 2368888988887431 1111111112222 2344555554332
Q ss_pred -CeEEEEEeecCe
Q 003792 246 -SILVTVSFKNRK 257 (795)
Q Consensus 246 -~~L~v~~l~sg~ 257 (795)
..+++.++.++.
T Consensus 345 ~~~i~~~d~~~~~ 357 (417)
T TIGR02800 345 GFNIAVMDLDGGG 357 (417)
T ss_pred ceEEEEEeCCCCC
Confidence 267777777654
No 149
>smart00108 B_lectin Bulb-type mannose-specific lectin.
Probab=66.31 E-value=49 Score=30.24 Aligned_cols=82 Identities=24% Similarity=0.423 Sum_probs=45.7
Q ss_pred CCEEEEEECcCCccceEEEcCCcceeeeeeeeeCCEEEEEEccCCeEEEEeCCCCcEeEEEeccCccccCCceecccccc
Q 003792 62 ENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLK 141 (795)
Q Consensus 62 ~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~~~~~~~s~~~~~~~~~~~ 141 (795)
++.+.-.+..++.++|.-....+ ......+.+..+ |.+...|. +|..+|+.......
T Consensus 29 dgnlV~~~~~~~~~vW~snt~~~--------~~~~~~l~l~~d-GnLvl~~~-~g~~vW~S~t~~~~------------- 85 (114)
T smart00108 29 DYNLILYKSSSRTVVWVANRDNP--------VSDSCTLTLQSD-GNLVLYDG-DGRVVWSSNTTGAN------------- 85 (114)
T ss_pred CEEEEEEECCCCcEEEECCCCCC--------CCCCEEEEEeCC-CCEEEEeC-CCCEEEEecccCCC-------------
Confidence 33333344333678998544322 111134444554 46777775 58999997554110
Q ss_pred ccCCCeEEEE-eCCEEEEEECCCCcEEEEE
Q 003792 142 VDKDSLILVS-SKGCLHAVSSIDGEILWTR 170 (795)
Q Consensus 142 ~~~~~~V~V~-~~g~l~ald~~tG~~~W~~ 170 (795)
....+++ .+|.|..++ ..|+++|+-
T Consensus 86 ---~~~~~~L~ddGnlvl~~-~~~~~~W~S 111 (114)
T smart00108 86 ---GNYVLVLLDDGNLVIYD-SDGNFLWQS 111 (114)
T ss_pred ---CceEEEEeCCCCEEEEC-CCCCEEeCC
Confidence 1223333 678887777 478899974
No 150
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=66.31 E-value=1.9e+02 Score=31.01 Aligned_cols=103 Identities=15% Similarity=0.110 Sum_probs=55.1
Q ss_pred EccCCeEEEEeCCCCcEeEEEeccCccccCCceeccccccccCCCeEEEEe------CCEEEEEECCCC-------cEEE
Q 003792 102 SSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSS------KGCLHAVSSIDG-------EILW 168 (795)
Q Consensus 102 s~~g~~v~A~d~~tG~llWe~~~~~~~~s~~~~~~~~~~~~~~~~~V~V~~------~g~l~ald~~tG-------~~~W 168 (795)
++.+..++.||.++|+.+-.++...++- ...+-. + ++.+++.. .+.|..+|..+- ++.-
T Consensus 70 GSAD~t~kLWDv~tGk~la~~k~~~~Vk--~~~F~~-----~-gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~ 141 (327)
T KOG0643|consen 70 GSADQTAKLWDVETGKQLATWKTNSPVK--RVDFSF-----G-GNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYL 141 (327)
T ss_pred ccccceeEEEEcCCCcEEEEeecCCeeE--EEeecc-----C-CcEEEEEehhhcCcceEEEEEEccCChhhhcccCceE
Confidence 4446789999999999999888876542 222221 1 23333322 456666665522 1222
Q ss_pred EEeccCcceeeeeEEEEecCCEEEEEEecCCceeEEEEEEcCCCceeeee
Q 003792 169 TRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHE 218 (795)
Q Consensus 169 ~~~~~~~~~~~~~vv~s~~~~~Vyvv~~~g~~~~~v~ald~~tG~~~w~~ 218 (795)
....+. ..+...+...-+..++...-+| .+..+|+.+|+.+-+.
T Consensus 142 kI~t~~--skit~a~Wg~l~~~ii~Ghe~G----~is~~da~~g~~~v~s 185 (327)
T KOG0643|consen 142 KIPTPD--SKITSALWGPLGETIIAGHEDG----SISIYDARTGKELVDS 185 (327)
T ss_pred EecCCc--cceeeeeecccCCEEEEecCCC----cEEEEEcccCceeeec
Confidence 222222 1111222222344444432233 7899999999776544
No 151
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=65.88 E-value=1.9e+02 Score=30.75 Aligned_cols=61 Identities=21% Similarity=0.266 Sum_probs=39.1
Q ss_pred CCCEEEEEeC-CCEEEEEECcCCccceEEEcCCcceeeeeeeeeCCEEEEEEcc-CCeEEEEeCC
Q 003792 52 GRKRVVVSTE-ENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSD-GSTLRAWNLP 114 (795)
Q Consensus 52 ~~~~v~vat~-~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~~-g~~v~A~d~~ 114 (795)
+.+.+|+.++ .+.|+.||. +|+++-|..+..-+..-++. ..+++.++++.+ .+.++.++..
T Consensus 32 d~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~-y~g~~~~vl~~Er~~~L~~~~~~ 94 (248)
T PF06977_consen 32 DTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGIT-YLGNGRYVLSEERDQRLYIFTID 94 (248)
T ss_dssp TTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEE-E-STTEEEEEETTTTEEEEEEE-
T ss_pred CCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEE-EECCCEEEEEEcCCCcEEEEEEe
Confidence 4677888776 589999996 79999999997654344553 356666666553 5678777773
No 152
>PRK05137 tolB translocation protein TolB; Provisional
Probab=65.70 E-value=2.5e+02 Score=32.09 Aligned_cols=137 Identities=14% Similarity=0.051 Sum_probs=65.4
Q ss_pred EEEEEECcCCccceEEEcCCcceeeeeee-eeCCEEEEEEc--cCCeEEEEeCCCCcEeEEEeccCccccCCceeccccc
Q 003792 64 VIASLDLRHGEIFWRHVLGINDVVDGIDI-ALGKYVITLSS--DGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNL 140 (795)
Q Consensus 64 ~l~ALn~~tG~ivWR~~l~~~~~i~~l~~-~~g~~~V~Vs~--~g~~v~A~d~~tG~llWe~~~~~~~~s~~~~~~~~~~ 140 (795)
.|+..|...+.+ ++.......+..... ..|+.++|++. .+..|+.||..+|+..=-....+.. ..+.+.
T Consensus 183 ~l~~~d~dg~~~--~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~--~~~~~S---- 254 (435)
T PRK05137 183 RLAIMDQDGANV--RYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMT--FAPRFS---- 254 (435)
T ss_pred EEEEECCCCCCc--EEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcc--cCcEEC----
Confidence 677888754433 222222222222111 35666778763 2468999999999753111111111 111222
Q ss_pred cccCCCeEE-EEe---CCEEEEEECCCCcEEEEEeccCcceeeeeEEEEecCCEEEEEEecCCceeEEEEEEcCCCce
Q 003792 141 KVDKDSLIL-VSS---KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGEL 214 (795)
Q Consensus 141 ~~~~~~~V~-V~~---~g~l~ald~~tG~~~W~~~~~~~~~~~~~vv~s~~~~~Vyvv~~~g~~~~~v~ald~~tG~~ 214 (795)
.+ ++.++ ... ...++.+|..+|+..=-...+.... ....+.++..+++.+..++ ...++.+|+.+|+.
T Consensus 255 -PD-G~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~---~~~~spDG~~i~f~s~~~g-~~~Iy~~d~~g~~~ 326 (435)
T PRK05137 255 -PD-GRKVVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDT---SPSYSPDGSQIVFESDRSG-SPQLYVMNADGSNP 326 (435)
T ss_pred -CC-CCEEEEEEecCCCceEEEEECCCCceEEccCCCCccC---ceeEcCCCCEEEEEECCCC-CCeEEEEECCCCCe
Confidence 23 23343 333 3469999998887532111111111 1111334555554443221 23678888877765
No 153
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=64.59 E-value=79 Score=36.06 Aligned_cols=77 Identities=13% Similarity=0.146 Sum_probs=54.7
Q ss_pred ccCCCEEEEEeCCCEEEEEECcCCccceEEEcCCcceeeeeeeeeCCEEEEEEccCCeEEEEeCCCCcEeEEEeccCcc
Q 003792 50 KTGRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSK 128 (795)
Q Consensus 50 ~~~~~~v~vat~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~~~~~~ 128 (795)
+++++.|.++...|.|.-|-++||+.+=...++.. +..+........+++++..|.|+-||...-..+-++.-.+..
T Consensus 312 Shd~~fia~~G~~G~I~lLhakT~eli~s~KieG~--v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v 388 (514)
T KOG2055|consen 312 SHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGV--VSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSV 388 (514)
T ss_pred cCCCCeEEEcccCceEEeehhhhhhhhheeeeccE--EeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCcc
Confidence 45577788888999999999999998888777655 443322333345555554459999999888777666655544
No 154
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=64.37 E-value=2.2e+02 Score=31.14 Aligned_cols=187 Identities=12% Similarity=0.215 Sum_probs=94.8
Q ss_pred eeeeeccCCCEEEEEeCCCEEEEEECcCCccceEEEcCC---cceeeeeee-eeCCEEEEEEccCCeEEEEeCCCCcEeE
Q 003792 45 VFHTQKTGRKRVVVSTEENVIASLDLRHGEIFWRHVLGI---NDVVDGIDI-ALGKYVITLSSDGSTLRAWNLPDGQMVW 120 (795)
Q Consensus 45 ~f~~~~~~~~~v~vat~~g~l~ALn~~tG~ivWR~~l~~---~~~i~~l~~-~~g~~~V~Vs~~g~~v~A~d~~tG~llW 120 (795)
.|..|.. ...++-++++|.+...+.++ |.-.-.- .+.+..+.+ +.++-.+.|+++ ..+|.||+-.|+.-.
T Consensus 90 ~F~~~~S-~shLlS~sdDG~i~iw~~~~----W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D-~~lr~WNLV~Gr~a~ 163 (362)
T KOG0294|consen 90 KFYPPLS-KSHLLSGSDDGHIIIWRVGS----WELLKSLKAHKGQVTDLSIHPSGKLALSVGGD-QVLRTWNLVRGRVAF 163 (362)
T ss_pred EecCCcc-hhheeeecCCCcEEEEEcCC----eEEeeeecccccccceeEecCCCceEEEEcCC-ceeeeehhhcCccce
Confidence 4554432 34699999999999988765 6321111 122333322 246667777775 589999999999988
Q ss_pred EEeccCccccCCceeccccccccCCCeEEE-EeCCEEEEEECCCCcEEEEEeccCcceeeeeEEEEecCCEEEEEEecCC
Q 003792 121 ESFLRGSKHSKPLLLVPTNLKVDKDSLILV-SSKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGS 199 (795)
Q Consensus 121 e~~~~~~~~s~~~~~~~~~~~~~~~~~V~V-~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~vv~s~~~~~Vyvv~~~g~ 199 (795)
-.++..... -....+ .++-|+ .....+-.+-..+-++.=+...+...+ ++.--..+.+++ |.+.+
T Consensus 164 v~~L~~~at--~v~w~~-------~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l----~~~~l~~~~L~v-G~d~~ 229 (362)
T KOG0294|consen 164 VLNLKNKAT--LVSWSP-------QGDHFVVSGRNKIDIYQLDNASVFREIENPKRIL----CATFLDGSELLV-GGDNE 229 (362)
T ss_pred eeccCCcce--eeEEcC-------CCCEEEEEeccEEEEEecccHhHhhhhhccccce----eeeecCCceEEE-ecCCc
Confidence 888765432 111111 233222 233333333222222222222111000 111124455554 43332
Q ss_pred ceeEEEEEEcCCCceeeeeeeeccCCcccceEEecC--cEEEEEECCCCeEEEEEeecC
Q 003792 200 SQFHAYQINAMNGELLNHETAAFSGGFVGDVALVSS--DTLVTLDTTRSILVTVSFKNR 256 (795)
Q Consensus 200 ~~~~v~ald~~tG~~~w~~~v~~~~~~~~~~~~vg~--~~lv~~d~~~~~L~v~~l~sg 256 (795)
.+...|..++.+..+... -+..+-+ ..+..+ ..++..-+..|.+.+=|+...
T Consensus 230 ---~i~~~D~ds~~~~~~~~A-H~~RVK~-i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 230 ---WISLKDTDSDTPLTEFLA-HENRVKD-IASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred ---eEEEeccCCCccceeeec-chhheee-eEEEecCCceEEEEeccCceEEEEEcccc
Confidence 688889888777765532 1222222 222222 233334345688887777654
No 155
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=64.33 E-value=2.8e+02 Score=32.26 Aligned_cols=219 Identities=14% Similarity=0.120 Sum_probs=108.4
Q ss_pred CCEEEEEeCCCEEEEEECcCCccceEEEcCCcceeeeeeeeeCCEEEEEEccCCeEEEEeCCCCcEeEEEeccCccccCC
Q 003792 53 RKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKP 132 (795)
Q Consensus 53 ~~~v~vat~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~~~~~~~s~~ 132 (795)
++.+++++.+|.+.--++. |...=++...-++.+.++ -...++.+.-++.++++.+|| .+=+.+=+.+++.+.- .
T Consensus 257 ngdviTgDS~G~i~Iw~~~-~~~~~k~~~aH~ggv~~L-~~lr~GtllSGgKDRki~~Wd-~~y~k~r~~elPe~~G--~ 331 (626)
T KOG2106|consen 257 NGDVITGDSGGNILIWSKG-TNRISKQVHAHDGGVFSL-CMLRDGTLLSGGKDRKIILWD-DNYRKLRETELPEQFG--P 331 (626)
T ss_pred CCCEEeecCCceEEEEeCC-CceEEeEeeecCCceEEE-EEecCccEeecCccceEEecc-ccccccccccCchhcC--C
Confidence 5568888889999888874 444445555444445555 235555555366689999999 4445555555554321 1
Q ss_pred ceeccccccccCCCeEEEE-eCCEE---------EEEECCCCcEEEEEeccCcceeeeeEEEEecCCEEEEEEecCCcee
Q 003792 133 LLLVPTNLKVDKDSLILVS-SKGCL---------HAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQF 202 (795)
Q Consensus 133 ~~~~~~~~~~~~~~~V~V~-~~g~l---------~ald~~tG~~~W~~~~~~~~~~~~~vv~s~~~~~Vyvv~~~g~~~~ 202 (795)
+..+ ... ..+++|. +.+.+ .-.-.--|..+|.....- ....|+-+.+..
T Consensus 332 iRtv----~e~-~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hp-------------s~~q~~T~gqdk--- 390 (626)
T KOG2106|consen 332 IRTV----AEG-KGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHP-------------SKNQLLTCGQDK--- 390 (626)
T ss_pred eeEE----ecC-CCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCC-------------ChhheeeccCcc---
Confidence 1222 112 3446665 22222 222223345666653321 111222232221
Q ss_pred EEEEEEcCCCceeeeeeeeccCCcccceEEecCcEEEEEECCCCeEEEEEeecCeeeeEEEeecccCCCCCCceEEeecC
Q 003792 203 HAYQINAMNGELLNHETAAFSGGFVGDVALVSSDTLVTLDTTRSILVTVSFKNRKIAFQETHLSNLGEDSSGMVEILPSS 282 (795)
Q Consensus 203 ~v~ald~~tG~~~w~~~v~~~~~~~~~~~~vg~~~lv~~d~~~~~L~v~~l~sg~~~~~~~~l~~l~~~~~~~~~~~~~~ 282 (795)
.+.-.+ .-++.|...+.-|..-.+ +-+.+ .++.. ...|...++|.++.. +-++.-+ ..+.......
T Consensus 391 ~v~lW~--~~k~~wt~~~~d~~~~~~--fhpsg-~va~G-t~~G~w~V~d~e~~~--lv~~~~d------~~~ls~v~ys 456 (626)
T KOG2106|consen 391 HVRLWN--DHKLEWTKIIEDPAECAD--FHPSG-VVAVG-TATGRWFVLDTETQD--LVTIHTD------NEQLSVVRYS 456 (626)
T ss_pred eEEEcc--CCceeEEEEecCceeEee--ccCcc-eEEEe-eccceEEEEecccce--eEEEEec------CCceEEEEEc
Confidence 344445 667889887665532111 11122 33333 346888888888754 2222221 1222223333
Q ss_pred Ccc-eeEEEecC-cEEEEEEecCC-cEEEEEe
Q 003792 283 LTG-MFTVKINN-YKLFIRLTSED-KLEVVHK 311 (795)
Q Consensus 283 ~~~-~~~~~~~~-~~~l~~~~~~~-~~~v~~~ 311 (795)
+.| .+.+.+.+ +..+++++.+| +...+..
T Consensus 457 p~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k 488 (626)
T KOG2106|consen 457 PDGAFLAVGSHDNHIYIYRVSANGRKYSRVGK 488 (626)
T ss_pred CCCCEEEEecCCCeEEEEEECCCCcEEEEeee
Confidence 344 33333334 55666666555 4444433
No 156
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=63.69 E-value=2.5e+02 Score=31.44 Aligned_cols=27 Identities=11% Similarity=0.185 Sum_probs=18.9
Q ss_pred CCEEEEEeCC------------CEEEEEECcCCccceEEEc
Q 003792 53 RKRVVVSTEE------------NVIASLDLRHGEIFWRHVL 81 (795)
Q Consensus 53 ~~~v~vat~~------------g~l~ALn~~tG~ivWR~~l 81 (795)
++.||+.... +.+.++|+.+. .|+..-
T Consensus 84 ~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n--~W~~~~ 122 (376)
T PRK14131 84 DGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTN--SWQKLD 122 (376)
T ss_pred CCEEEEEcCCCCCCCCCceeEcccEEEEeCCCC--EEEeCC
Confidence 6778886542 34788898775 598864
No 157
>PRK03629 tolB translocation protein TolB; Provisional
Probab=63.23 E-value=2.8e+02 Score=31.77 Aligned_cols=149 Identities=14% Similarity=0.153 Sum_probs=72.5
Q ss_pred eCCEEEEEEc--cCCeEEEEeCCCCcEeEEEeccCccccCCceeccccccccCCCeEEE-Ee-CC--EEEEEECCCCcEE
Q 003792 94 LGKYVITLSS--DGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILV-SS-KG--CLHAVSSIDGEIL 167 (795)
Q Consensus 94 ~g~~~V~Vs~--~g~~v~A~d~~tG~llWe~~~~~~~~s~~~~~~~~~~~~~~~~~V~V-~~-~g--~l~ald~~tG~~~ 167 (795)
.|+.++|++. .+..++.||..+|+..--....+.. ..+.+.| + ++.+++ .. +| .|+.+|.++|+..
T Consensus 209 DG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~--~~~~~SP-----D-G~~La~~~~~~g~~~I~~~d~~tg~~~ 280 (429)
T PRK03629 209 DGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHN--GAPAFSP-----D-GSKLAFALSKTGSLNLYVMDLASGQIR 280 (429)
T ss_pred CCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCc--CCeEECC-----C-CCEEEEEEcCCCCcEEEEEECCCCCEE
Confidence 5666777653 2357999999999754322222211 1222222 3 233433 32 33 6888998888754
Q ss_pred EEEeccCcceeeeeEEEEecCCEEEEEEecCCceeEEEEEEcCCCceeeeeeeeccCCcccceEE-ecCcEEEEEECCC-
Q 003792 168 WTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAFSGGFVGDVAL-VSSDTLVTLDTTR- 245 (795)
Q Consensus 168 W~~~~~~~~~~~~~vv~s~~~~~Vyvv~~~g~~~~~v~ald~~tG~~~w~~~v~~~~~~~~~~~~-vg~~~lv~~d~~~- 245 (795)
=-...... ...+..+.++..+++.+..++ ...++.+|+.+|+... +.........+.+ ..+..++......
T Consensus 281 ~lt~~~~~---~~~~~wSPDG~~I~f~s~~~g-~~~Iy~~d~~~g~~~~---lt~~~~~~~~~~~SpDG~~Ia~~~~~~g 353 (429)
T PRK03629 281 QVTDGRSN---NTEPTWFPDSQNLAYTSDQAG-RPQVYKVNINGGAPQR---ITWEGSQNQDADVSSDGKFMVMVSSNGG 353 (429)
T ss_pred EccCCCCC---cCceEECCCCCEEEEEeCCCC-CceEEEEECCCCCeEE---eecCCCCccCEEECCCCCEEEEEEccCC
Confidence 22111111 111222334555555444332 2468888988886531 1111111111222 2334555544332
Q ss_pred -CeEEEEEeecCe
Q 003792 246 -SILVTVSFKNRK 257 (795)
Q Consensus 246 -~~L~v~~l~sg~ 257 (795)
..+++.++.++.
T Consensus 354 ~~~I~~~dl~~g~ 366 (429)
T PRK03629 354 QQHIAKQDLATGG 366 (429)
T ss_pred CceEEEEECCCCC
Confidence 357778887775
No 158
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=62.89 E-value=2.8e+02 Score=31.81 Aligned_cols=188 Identities=13% Similarity=0.125 Sum_probs=106.9
Q ss_pred CCEEEEEeCCCEEEEEECcCCccceEEEcCCcceee-eeeee-eCCEEEEEEccCCeEEEEeC-----C-----------
Q 003792 53 RKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVD-GIDIA-LGKYVITLSSDGSTLRAWNL-----P----------- 114 (795)
Q Consensus 53 ~~~v~vat~~g~l~ALn~~tG~ivWR~~l~~~~~i~-~l~~~-~g~~~V~Vs~~g~~v~A~d~-----~----------- 114 (795)
.+.|.|-|-+|.|.-++.+. ..-++.++.-. +. .+... ..+-.|+.++ ...+.++.- .
T Consensus 145 ~~~IcVQS~DG~L~~feqe~--~~f~~~lp~~l-lPgPl~Y~~~tDsfvt~ss-s~~l~~Yky~~La~~s~~~~~~~~~~ 220 (418)
T PF14727_consen 145 RDFICVQSMDGSLSFFEQES--FAFSRFLPDFL-LPGPLCYCPRTDSFVTASS-SWTLECYKYQDLASASEASSRQSGTE 220 (418)
T ss_pred ceEEEEEecCceEEEEeCCc--EEEEEEcCCCC-CCcCeEEeecCCEEEEecC-ceeEEEecHHHhhhcccccccccccc
Confidence 46699999999999998643 45566665431 11 11112 2333444333 345555431 0
Q ss_pred ----CC---cEeEEEeccCccccCCceeccccccccCCCeEEEEeCCEEEEEECCCCcEEEEEeccCcce--eeeeEEEE
Q 003792 115 ----DG---QMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSSKGCLHAVSSIDGEILWTRDFAAESV--EVQQVIQL 185 (795)
Q Consensus 115 ----tG---~llWe~~~~~~~~s~~~~~~~~~~~~~~~~~V~V~~~g~l~ald~~tG~~~W~~~~~~~~~--~~~~vv~s 185 (795)
+| ..-|.+.+..+.+ ++.++.. .....+|+|++...|++++. +|.++|..++..... -++.+...
T Consensus 221 ~~~~~~k~l~~dWs~nlGE~~l--~i~v~~~---~~~~~~IvvLger~Lf~l~~-~G~l~~~krLd~~p~~~~~Y~~~~~ 294 (418)
T PF14727_consen 221 QDISSGKKLNPDWSFNLGEQAL--DIQVVRF---SSSESDIVVLGERSLFCLKD-NGSLRFQKRLDYNPSCFCPYRVPWY 294 (418)
T ss_pred ccccccccccceeEEECCceeE--EEEEEEc---CCCCceEEEEecceEEEEcC-CCeEEEEEecCCceeeEEEEEeecc
Confidence 23 3679999887664 4444431 11245799999999999995 899999999865432 23333111
Q ss_pred ecCC--EEEEEEecCCceeEEEEEEcCCCceeeeeeeec-cCCcccceEEe-cCcEEEEEECCCCeEEEEEeecCe
Q 003792 186 DESD--QIYVVGYAGSSQFHAYQINAMNGELLNHETAAF-SGGFVGDVALV-SSDTLVTLDTTRSILVTVSFKNRK 257 (795)
Q Consensus 186 ~~~~--~Vyvv~~~g~~~~~v~ald~~tG~~~w~~~v~~-~~~~~~~~~~v-g~~~lv~~d~~~~~L~v~~l~sg~ 257 (795)
..++ ..++++...+ .+..+ ++.+++|..++.. |-.+.- +-+- -.+.+|.++. +|.|.+.=|+|..
T Consensus 295 ~~~~~~~~llV~t~t~---~LlVy--~d~~L~WsA~l~~~PVal~v-~~~~~~~G~IV~Ls~-~G~L~v~YLGTdP 363 (418)
T PF14727_consen 295 NEPSTRLNLLVGTHTG---TLLVY--EDTTLVWSAQLPHVPVALSV-ANFNGLKGLIVSLSD-EGQLSVSYLGTDP 363 (418)
T ss_pred cCCCCceEEEEEecCC---eEEEE--eCCeEEEecCCCCCCEEEEe-cccCCCCceEEEEcC-CCcEEEEEeCCCC
Confidence 1222 2233333322 34433 3778899986522 111110 0000 1467888874 6999999999876
No 159
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=62.40 E-value=71 Score=35.94 Aligned_cols=109 Identities=18% Similarity=0.191 Sum_probs=67.8
Q ss_pred EEEEcc-CCeEEEEeCCCCcEeEEEeccCccccCCceeccccccccCCCeEEEEe-CCEEEEEECCCCcEEEEEeccCcc
Q 003792 99 ITLSSD-GSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSS-KGCLHAVSSIDGEILWTRDFAAES 176 (795)
Q Consensus 99 V~Vs~~-g~~v~A~d~~tG~llWe~~~~~~~~s~~~~~~~~~~~~~~~~~V~V~~-~g~l~ald~~tG~~~W~~~~~~~~ 176 (795)
.++|+. +.+||.||..++...-+.++.+-.. ++.+. .+ ...|+..+ +..+-.+|..+-+++=.+..+.-.
T Consensus 314 ~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vt--Sl~ls-----~~-g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k 385 (459)
T KOG0288|consen 314 DVISGHFDKKVRFWDIRSADKTRSVPLGGRVT--SLDLS-----MD-GLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFK 385 (459)
T ss_pred eeeecccccceEEEeccCCceeeEeecCccee--eEeec-----cC-CeEEeeecCCCceeeeecccccEEEEeeccccc
Confidence 345764 6789999999999999999887432 11111 11 23444443 888888898888877776654321
Q ss_pred e--eeeeEEEEecCCEEEEEEecCCceeEEEEEEcCCCceeeeee
Q 003792 177 V--EVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHET 219 (795)
Q Consensus 177 ~--~~~~vv~s~~~~~Vyvv~~~g~~~~~v~ald~~tG~~~w~~~ 219 (795)
. ...+++.+.++..|-+.+.+| .|+..+..+|+......
T Consensus 386 ~asDwtrvvfSpd~~YvaAGS~dg----sv~iW~v~tgKlE~~l~ 426 (459)
T KOG0288|consen 386 CASDWTRVVFSPDGSYVAAGSADG----SVYIWSVFTGKLEKVLS 426 (459)
T ss_pred cccccceeEECCCCceeeeccCCC----cEEEEEccCceEEEEec
Confidence 1 122343333444444333333 78999999999876654
No 160
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=62.05 E-value=1.3e+02 Score=31.62 Aligned_cols=78 Identities=14% Similarity=0.261 Sum_probs=49.6
Q ss_pred CCEEEEEE--CCCCcEE-----EEEeccC--cceeeeeEEEEecCCEEEEEEecCCceeEEEEEEcCCCceeeeeeeecc
Q 003792 153 KGCLHAVS--SIDGEIL-----WTRDFAA--ESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAFS 223 (795)
Q Consensus 153 ~g~l~ald--~~tG~~~-----W~~~~~~--~~~~~~~vv~s~~~~~Vyvv~~~g~~~~~v~ald~~tG~~~w~~~v~~~ 223 (795)
+-++-|+| ..+|... ...+... ....|..+. ..+.+.+|+..+.|+ +|..+|+.||+++-+..+..+
T Consensus 179 n~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~-ID~eG~L~Va~~ng~---~V~~~dp~tGK~L~eiklPt~ 254 (310)
T KOG4499|consen 179 NYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMT-IDTEGNLYVATFNGG---TVQKVDPTTGKILLEIKLPTP 254 (310)
T ss_pred ceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcce-EccCCcEEEEEecCc---EEEEECCCCCcEEEEEEcCCC
Confidence 55675555 7777542 2222211 122233332 246889999999987 999999999999999976654
Q ss_pred CCcccceEEecCc
Q 003792 224 GGFVGDVALVSSD 236 (795)
Q Consensus 224 ~~~~~~~~~vg~~ 236 (795)
. + .+|-|.|.|
T Consensus 255 q-i-tsccFgGkn 265 (310)
T KOG4499|consen 255 Q-I-TSCCFGGKN 265 (310)
T ss_pred c-e-EEEEecCCC
Confidence 3 2 356676664
No 161
>PRK13684 Ycf48-like protein; Provisional
Probab=61.72 E-value=2.6e+02 Score=30.93 Aligned_cols=179 Identities=15% Similarity=0.235 Sum_probs=88.4
Q ss_pred cceeeccccceeEEEeccCc--eeeeeeeeeccCCCEEEEEeCCCEEEEEECcCCccceEEEcCCc-ceeeeeeeeeCCE
Q 003792 21 LSLYEDQVGLMDWHQQYIGK--VKHAVFHTQKTGRKRVVVSTEENVIASLDLRHGEIFWRHVLGIN-DVVDGIDIALGKY 97 (795)
Q Consensus 21 ~Al~edq~G~~dW~~~~vG~--~~~~~f~~~~~~~~~v~vat~~g~l~ALn~~tG~ivWR~~l~~~-~~i~~l~~~~g~~ 97 (795)
..+|..+.|-..|+....+. +.+. +.-.....+.++++++.|.|+.- .||-.-|+...... +.+..+....++.
T Consensus 109 g~i~~S~DgG~tW~~~~~~~~~~~~~-~~i~~~~~~~~~~~g~~G~i~~S--~DgG~tW~~~~~~~~g~~~~i~~~~~g~ 185 (334)
T PRK13684 109 SLLLHTTDGGKNWTRIPLSEKLPGSP-YLITALGPGTAEMATNVGAIYRT--TDGGKNWEALVEDAAGVVRNLRRSPDGK 185 (334)
T ss_pred ceEEEECCCCCCCeEccCCcCCCCCc-eEEEEECCCcceeeeccceEEEE--CCCCCCceeCcCCCcceEEEEEECCCCe
Confidence 46888888777898865431 1111 11111224457788888877655 46888899755432 2333332222333
Q ss_pred EEEEEccCCeEEEEeCCCCcEeEEEeccCccccCCceeccccccccCCCeE-EEEeCCEEEEEECCCCcEEEEE-eccCc
Q 003792 98 VITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLI-LVSSKGCLHAVSSIDGEILWTR-DFAAE 175 (795)
Q Consensus 98 ~V~Vs~~g~~v~A~d~~tG~llWe~~~~~~~~s~~~~~~~~~~~~~~~~~V-~V~~~g~l~ald~~tG~~~W~~-~~~~~ 175 (795)
.+.++..| .++.- ..+|..-|+..-.... ..+..+ ....++.+ +|..+|.+. +...+|-.-|+. ..+..
T Consensus 186 ~v~~g~~G-~i~~s-~~~gg~tW~~~~~~~~--~~l~~i----~~~~~g~~~~vg~~G~~~-~~s~d~G~sW~~~~~~~~ 256 (334)
T PRK13684 186 YVAVSSRG-NFYST-WEPGQTAWTPHQRNSS--RRLQSM----GFQPDGNLWMLARGGQIR-FNDPDDLESWSKPIIPEI 256 (334)
T ss_pred EEEEeCCc-eEEEE-cCCCCCeEEEeeCCCc--ccceee----eEcCCCCEEEEecCCEEE-EccCCCCCccccccCCcc
Confidence 44445544 44432 3467788986533221 111111 11113444 444566553 434566678885 22211
Q ss_pred --ceeeeeEEEEecCCEEEEEEecCCceeEEEEEEcCCCceeeee
Q 003792 176 --SVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHE 218 (795)
Q Consensus 176 --~~~~~~vv~s~~~~~Vyvv~~~g~~~~~v~ald~~tG~~~w~~ 218 (795)
......+. ...++.+|+++..|. ++ .. .+|-..|+.
T Consensus 257 ~~~~~l~~v~-~~~~~~~~~~G~~G~----v~-~S-~d~G~tW~~ 294 (334)
T PRK13684 257 TNGYGYLDLA-YRTPGEIWAGGGNGT----LL-VS-KDGGKTWEK 294 (334)
T ss_pred ccccceeeEE-EcCCCCEEEEcCCCe----EE-Ee-CCCCCCCeE
Confidence 11122222 134667888777662 22 22 345556666
No 162
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.40 E-value=4.1e+02 Score=33.20 Aligned_cols=111 Identities=11% Similarity=0.138 Sum_probs=58.4
Q ss_pred ccceEEEcCCc--ceeeeeeeeeCCEEEEEEccCCeEEEEeCCCCcEeEEEeccCccccCCceeccccccccCCCeEEEE
Q 003792 74 EIFWRHVLGIN--DVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVS 151 (795)
Q Consensus 74 ~ivWR~~l~~~--~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~~~~~~~s~~~~~~~~~~~~~~~~~V~V~ 151 (795)
...|....=.+ .++.+.-.....++|.-.+.++.+|.||+..-+-+=.++...... +++. +.
T Consensus 238 tKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRF----W~la------------ah 301 (1202)
T KOG0292|consen 238 TKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRF----WILA------------AH 301 (1202)
T ss_pred ccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeE----EEEE------------ec
Confidence 44676655333 133333112233455434567899999998655554444333221 2221 01
Q ss_pred eCCEEEEEECCCCcEEEEEeccCcceeeeeEEEEecCCEEEEEEecCCceeEEEEEEcCCC
Q 003792 152 SKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNG 212 (795)
Q Consensus 152 ~~g~l~ald~~tG~~~W~~~~~~~~~~~~~vv~s~~~~~Vyvv~~~g~~~~~v~ald~~tG 212 (795)
-...|+|---++|..+...+...|. -+ ..++.+|.+- .. .+..+|..|-
T Consensus 302 P~lNLfAAgHDsGm~VFkleRErpa----~~---v~~n~LfYvk-d~----~i~~~d~~t~ 350 (1202)
T KOG0292|consen 302 PELNLFAAGHDSGMIVFKLERERPA----YA---VNGNGLFYVK-DR----FIRSYDLRTQ 350 (1202)
T ss_pred CCcceeeeecCCceEEEEEcccCce----EE---EcCCEEEEEc-cc----eEEeeecccc
Confidence 1345555555677777777654432 22 4677777654 22 5777777763
No 163
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=60.81 E-value=1e+02 Score=34.14 Aligned_cols=65 Identities=14% Similarity=0.215 Sum_probs=42.4
Q ss_pred EEEEEccCCeEEEEeCCCCcEeEEEeccCccccCCceeccccccccCCCeEEEE--eCCEEEEEECCCCcEEEEE
Q 003792 98 VITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVS--SKGCLHAVSSIDGEILWTR 170 (795)
Q Consensus 98 ~V~Vs~~g~~v~A~d~~tG~llWe~~~~~~~~s~~~~~~~~~~~~~~~~~V~V~--~~g~l~ald~~tG~~~W~~ 170 (795)
....++.++.++.||..+|..+-+......-. .+..+-| .+..++. .|+.|...|.++++..=.+
T Consensus 306 ~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwV-r~~af~p-------~Gkyi~ScaDDktlrvwdl~~~~cmk~~ 372 (406)
T KOG0295|consen 306 VLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWV-RGVAFSP-------GGKYILSCADDKTLRVWDLKNLQCMKTL 372 (406)
T ss_pred EEEeecccceEEEEeccCCeEEEEEeccccee-eeeEEcC-------CCeEEEEEecCCcEEEEEeccceeeecc
Confidence 44445568899999999999999887765433 2322332 3333332 4888888888877654333
No 164
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=60.76 E-value=23 Score=40.20 Aligned_cols=181 Identities=10% Similarity=0.109 Sum_probs=101.5
Q ss_pred CCEEEEEeCCCEEEEEECcCCccceEEEcCCcc-eeeeeeeeeCCEEEEEEccCCeEEEEeCCCCcEeEEEeccCccccC
Q 003792 53 RKRVVVSTEENVIASLDLRHGEIFWRHVLGIND-VVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSK 131 (795)
Q Consensus 53 ~~~v~vat~~g~l~ALn~~tG~ivWR~~l~~~~-~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~~~~~~~s~ 131 (795)
+..+..+..+|.|+|+|-.|+++.-.+.+.+.. .+.-+ ..+..+.|.- ...++-+| ..|..+=-..-..++ .
T Consensus 141 GrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~L---Hneq~~AVAQ-K~y~yvYD-~~GtElHClk~~~~v--~ 213 (545)
T KOG1272|consen 141 GRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFL---HNEQFFAVAQ-KKYVYVYD-NNGTELHCLKRHIRV--A 213 (545)
T ss_pred ccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhh---cchHHHHhhh-hceEEEec-CCCcEEeehhhcCch--h
Confidence 444889999999999999999999888876551 11111 2222222222 33555555 346655554444443 2
Q ss_pred CceeccccccccCCCeEEEE--eCCEEEEEECCCCcEEEEEeccCcceeeeeEEEEecCCEEEEEEecCCceeEEEEEEc
Q 003792 132 PLLLVPTNLKVDKDSLILVS--SKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINA 209 (795)
Q Consensus 132 ~~~~~~~~~~~~~~~~V~V~--~~g~l~ald~~tG~~~W~~~~~~~~~~~~~vv~s~~~~~Vyvv~~~g~~~~~v~ald~ 209 (795)
.+.++| -..+++. ..|-|.-.|..+|+.+=+.....+.+. ++..---+.|.-+|-.+ ..|.-.++
T Consensus 214 rLeFLP-------yHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~---vm~qNP~NaVih~Ghsn---GtVSlWSP 280 (545)
T KOG1272|consen 214 RLEFLP-------YHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTD---VMKQNPYNAVIHLGHSN---GTVSLWSP 280 (545)
T ss_pred hhcccc-------hhheeeecccCCceEEEeechhhhhHHHHccCCccc---hhhcCCccceEEEcCCC---ceEEecCC
Confidence 445665 4566665 388999999999999887766655431 11000112233333332 26776677
Q ss_pred CCCceeeeeeeeccCCcccceEEecCcEEEEEECCCCeEEEEEeec
Q 003792 210 MNGELLNHETAAFSGGFVGDVALVSSDTLVTLDTTRSILVTVSFKN 255 (795)
Q Consensus 210 ~tG~~~w~~~v~~~~~~~~~~~~vg~~~lv~~d~~~~~L~v~~l~s 255 (795)
..-+++-+.. --++.++ ++.+-.++.+.++......+.+-||..
T Consensus 281 ~skePLvKiL-cH~g~V~-siAv~~~G~YMaTtG~Dr~~kIWDlR~ 324 (545)
T KOG1272|consen 281 NSKEPLVKIL-CHRGPVS-SIAVDRGGRYMATTGLDRKVKIWDLRN 324 (545)
T ss_pred CCcchHHHHH-hcCCCcc-eEEECCCCcEEeecccccceeEeeecc
Confidence 6666554331 0112232 233323344445544456788888876
No 165
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=60.44 E-value=3.6e+02 Score=32.27 Aligned_cols=171 Identities=11% Similarity=0.109 Sum_probs=91.6
Q ss_pred CCEEEEEeCCC-------EEEEEECcCCccceEEEcCCcce--eeeeeeeeCCEEEEEEccC-----CeEEEEeCCCCcE
Q 003792 53 RKRVVVSTEEN-------VIASLDLRHGEIFWRHVLGINDV--VDGIDIALGKYVITLSSDG-----STLRAWNLPDGQM 118 (795)
Q Consensus 53 ~~~v~vat~~g-------~l~ALn~~tG~ivWR~~l~~~~~--i~~l~~~~g~~~V~Vs~~g-----~~v~A~d~~tG~l 118 (795)
++.||+..+.+ .+...|+++++ |+..-+-... -.++ .+.++.+++|||.+ ..+-.||+.+ -
T Consensus 332 ~~~lYv~GG~~~~~~~l~~ve~YD~~~~~--W~~~a~M~~~R~~~~v-~~l~g~iYavGG~dg~~~l~svE~YDp~~--~ 406 (571)
T KOG4441|consen 332 NGKLYVVGGYDSGSDRLSSVERYDPRTNQ--WTPVAPMNTKRSDFGV-AVLDGKLYAVGGFDGEKSLNSVECYDPVT--N 406 (571)
T ss_pred CCEEEEEccccCCCcccceEEEecCCCCc--eeccCCccCcccccee-EEECCEEEEEeccccccccccEEEecCCC--C
Confidence 67888876543 57888999998 9984443311 1122 24566666667643 2356666643 4
Q ss_pred eEEEeccCccccCCceeccccccccCCCeEEEEeC--------CEEEEEECCCCcEEEEEeccCcce-eeeeEEEEecCC
Q 003792 119 VWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSSK--------GCLHAVSSIDGEILWTRDFAAESV-EVQQVIQLDESD 189 (795)
Q Consensus 119 lWe~~~~~~~~s~~~~~~~~~~~~~~~~~V~V~~~--------g~l~ald~~tG~~~W~~~~~~~~~-~~~~vv~s~~~~ 189 (795)
.|+.-..-...... .+ ...-++.+++.++ ..+.++|+.++ .|+...+.... ....+ +.-++
T Consensus 407 ~W~~va~m~~~r~~---~g---v~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~--~W~~~~~M~~~R~~~g~--a~~~~ 476 (571)
T KOG4441|consen 407 KWTPVAPMLTRRSG---HG---VAVLGGKLYIIGGGDGSSNCLNSVECYDPETN--TWTLIAPMNTRRSGFGV--AVLNG 476 (571)
T ss_pred cccccCCCCcceee---eE---EEEECCEEEEEcCcCCCccccceEEEEcCCCC--ceeecCCcccccccceE--EEECC
Confidence 57765422111001 11 1122566777531 46788888775 58876654332 11112 35689
Q ss_pred EEEEEEecCCc--eeEEEEEEcCCCceeeeeeeeccCCccc-ceEEecCcEEEE
Q 003792 190 QIYVVGYAGSS--QFHAYQINAMNGELLNHETAAFSGGFVG-DVALVSSDTLVT 240 (795)
Q Consensus 190 ~Vyvv~~~g~~--~~~v~ald~~tG~~~w~~~v~~~~~~~~-~~~~vg~~~lv~ 240 (795)
.+|++|...+. --.+.++|+.+-+ |..--..+...++ .+..+++.++++
T Consensus 477 ~iYvvGG~~~~~~~~~VE~ydp~~~~--W~~v~~m~~~rs~~g~~~~~~~ly~v 528 (571)
T KOG4441|consen 477 KIYVVGGFDGTSALSSVERYDPETNQ--WTMVAPMTSPRSAVGVVVLGGKLYAV 528 (571)
T ss_pred EEEEECCccCCCccceEEEEcCCCCc--eeEcccCccccccccEEEECCEEEEE
Confidence 99998754321 1347889987653 4443223333333 233334444433
No 166
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=59.81 E-value=2.8e+02 Score=31.39 Aligned_cols=102 Identities=17% Similarity=0.076 Sum_probs=47.0
Q ss_pred EECcCCccceEEEcCCccee------eeeeeeeCCEEEEEEcc--CCeEEEEeCCCCcEeEEEeccCccccCCceecccc
Q 003792 68 LDLRHGEIFWRHVLGINDVV------DGIDIALGKYVITLSSD--GSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTN 139 (795)
Q Consensus 68 Ln~~tG~ivWR~~l~~~~~i------~~l~~~~g~~~V~Vs~~--g~~v~A~d~~tG~llWe~~~~~~~~s~~~~~~~~~ 139 (795)
.|+.||-.+=|..-.....- .+. -..|+.++|.|.. ..+++.+|+++|+..==+...+... .+..+.+
T Consensus 15 ~D~~TG~~VtrLT~~~~~~h~~YF~~~~f-t~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~-~g~~~s~-- 90 (386)
T PF14583_consen 15 IDPDTGHRVTRLTPPDGHSHRLYFYQNCF-TDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNT-FGGFLSP-- 90 (386)
T ss_dssp E-TTT--EEEE-S-TTS-EE---TTS--B--TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-T-TT-EE-T--
T ss_pred eCCCCCceEEEecCCCCcccceeecCCCc-CCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCc-cceEEec--
Confidence 46777766655322222110 122 1346678886652 4789999999999873333322211 1222222
Q ss_pred ccccCCCeE-EEEeCCEEEEEECCCCcEEEEEeccCcce
Q 003792 140 LKVDKDSLI-LVSSKGCLHAVSSIDGEILWTRDFAAESV 177 (795)
Q Consensus 140 ~~~~~~~~V-~V~~~g~l~ald~~tG~~~W~~~~~~~~~ 177 (795)
. ++.+ ++..+..|.++|.+|++..=-+..|....
T Consensus 91 ---~-~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~ 125 (386)
T PF14583_consen 91 ---D-DRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWK 125 (386)
T ss_dssp ---T-SSEEEEEETTTEEEEEETTT--EEEEEE--TTEE
T ss_pred ---C-CCeEEEEECCCeEEEEECCcCcEEEEEECCcccc
Confidence 2 3444 44456799999999999876666665543
No 167
>PLN02193 nitrile-specifier protein
Probab=59.74 E-value=3.3e+02 Score=31.58 Aligned_cols=198 Identities=10% Similarity=0.131 Sum_probs=96.8
Q ss_pred CCEEEEEeCC--------CEEEEEECcCCccceEEEcCCcc--ee--eeee-eeeCCEEEEEEccC-----CeEEEEeCC
Q 003792 53 RKRVVVSTEE--------NVIASLDLRHGEIFWRHVLGIND--VV--DGID-IALGKYVITLSSDG-----STLRAWNLP 114 (795)
Q Consensus 53 ~~~v~vat~~--------g~l~ALn~~tG~ivWR~~l~~~~--~i--~~l~-~~~g~~~V~Vs~~g-----~~v~A~d~~ 114 (795)
++.||+.... +.+..+|+++. .|+..-.... .. .+.. +..++.+++++|.+ ..+..+|+.
T Consensus 175 ~~~iyv~GG~~~~~~~~~~~v~~yD~~~~--~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~ 252 (470)
T PLN02193 175 GNKIYSFGGEFTPNQPIDKHLYVFDLETR--TWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTT 252 (470)
T ss_pred CCEEEEECCcCCCCCCeeCcEEEEECCCC--EEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECC
Confidence 6678876542 35889999875 5996432111 00 1111 23465555556632 358899998
Q ss_pred CCcEeEEEeccCccccCCceeccccccccCCCeEEEEe--C-----CEEEEEECCCCcEEEEEeccCcce-eee-eEEEE
Q 003792 115 DGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSS--K-----GCLHAVSSIDGEILWTRDFAAESV-EVQ-QVIQL 185 (795)
Q Consensus 115 tG~llWe~~~~~~~~s~~~~~~~~~~~~~~~~~V~V~~--~-----g~l~ald~~tG~~~W~~~~~~~~~-~~~-~vv~s 185 (795)
+. .|+.-...... +.+......... ++.++|.. + ..+.++|..+. .|+.-.+.... .+. .....
T Consensus 253 t~--~W~~l~~~~~~--P~~R~~h~~~~~-~~~iYv~GG~~~~~~~~~~~~yd~~t~--~W~~~~~~~~~~~~R~~~~~~ 325 (470)
T PLN02193 253 TN--EWKLLTPVEEG--PTPRSFHSMAAD-EENVYVFGGVSATARLKTLDSYNIVDK--KWFHCSTPGDSFSIRGGAGLE 325 (470)
T ss_pred CC--EEEEcCcCCCC--CCCccceEEEEE-CCEEEEECCCCCCCCcceEEEEECCCC--EEEeCCCCCCCCCCCCCcEEE
Confidence 75 58763221100 000111000122 45677753 1 35788888764 58753321110 000 00002
Q ss_pred ecCCEEEEEEec-CCceeEEEEEEcCCCceeeeeeeec---cCCccc-ceEEecCcEEEEEECC-------------CCe
Q 003792 186 DESDQIYVVGYA-GSSQFHAYQINAMNGELLNHETAAF---SGGFVG-DVALVSSDTLVTLDTT-------------RSI 247 (795)
Q Consensus 186 ~~~~~Vyvv~~~-g~~~~~v~ald~~tG~~~w~~~v~~---~~~~~~-~~~~vg~~~lv~~d~~-------------~~~ 247 (795)
.-++.+|+++-. +...-.+.++|+.+.+ |+..-.. |..... .++.+++.+++..-.. ...
T Consensus 326 ~~~gkiyviGG~~g~~~~dv~~yD~~t~~--W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~nd 403 (470)
T PLN02193 326 VVQGKVWVVYGFNGCEVDDVHYYDPVQDK--WTQVETFGVRPSERSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDG 403 (470)
T ss_pred EECCcEEEEECCCCCccCceEEEECCCCE--EEEeccCCCCCCCcceeEEEEECCEEEEECCccCCccccccCccceecc
Confidence 346788877643 2112358899998764 7664221 222222 3333455544432210 124
Q ss_pred EEEEEeecCeeeeEEE
Q 003792 248 LVTVSFKNRKIAFQET 263 (795)
Q Consensus 248 L~v~~l~sg~~~~~~~ 263 (795)
++++|+.+.+ ...+
T Consensus 404 v~~~D~~t~~--W~~~ 417 (470)
T PLN02193 404 TFALDTETLQ--WERL 417 (470)
T ss_pred EEEEEcCcCE--EEEc
Confidence 6778887766 5443
No 168
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=58.64 E-value=62 Score=37.70 Aligned_cols=98 Identities=13% Similarity=0.101 Sum_probs=60.8
Q ss_pred CCEEEEEECCCCcEEEEEeccCcceeeeeEEEEecCCEEEEEEecCCceeEEEEEEcCCCceeeeeeeeccCCcccceEE
Q 003792 153 KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAFSGGFVGDVAL 232 (795)
Q Consensus 153 ~g~l~ald~~tG~~~W~~~~~~~~~~~~~vv~s~~~~~Vyvv~~~g~~~~~v~ald~~tG~~~w~~~v~~~~~~~~~~~~ 232 (795)
-+.|..||+.+|+++-+.....-.. +-++...++.|-+.+..|...++++-||+.|=++..+......+ .++++
T Consensus 374 ls~LvllD~~tg~~l~~S~~~~Ir~---r~~~~~~~~~vaI~g~~G~~~ikLvlid~~tLev~kes~~~i~~---~S~l~ 447 (489)
T PF05262_consen 374 LSELVLLDSDTGDTLKRSPVNGIRG---RTFYEREDDLVAIAGCSGNAAIKLVLIDPETLEVKKESEDEISW---QSSLI 447 (489)
T ss_pred ceeEEEEeCCCCceecccccceecc---ceeEEcCCCEEEEeccCCchheEEEecCcccceeeeeccccccc---cCceE
Confidence 4789999999999887754432111 22223345545444445666789999999998888777433221 25666
Q ss_pred e-cCcEEEEEECCCCeEEEEEeecC
Q 003792 233 V-SSDTLVTLDTTRSILVTVSFKNR 256 (795)
Q Consensus 233 v-g~~~lv~~d~~~~~L~v~~l~sg 256 (795)
+ |+.+++++...+|..+..-..++
T Consensus 448 ~~~~~iyaVv~~~~g~~~L~rF~~~ 472 (489)
T PF05262_consen 448 VDGQMIYAVVKKDNGKWYLGRFDSN 472 (489)
T ss_pred EcCCeEEEEEEcCCCeEEEeecCcc
Confidence 6 44556566345677766665543
No 169
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=58.57 E-value=3.1e+02 Score=30.86 Aligned_cols=64 Identities=19% Similarity=0.268 Sum_probs=40.8
Q ss_pred CCEEEEEEccCCeEEEEeCCCCcEeEEEeccCccccCCceeccccccccCCCeEEEE--eCCEEEEEECCCCcEE
Q 003792 95 GKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVS--SKGCLHAVSSIDGEIL 167 (795)
Q Consensus 95 g~~~V~Vs~~g~~v~A~d~~tG~llWe~~~~~~~~s~~~~~~~~~~~~~~~~~V~V~--~~g~l~ald~~tG~~~ 167 (795)
+..+++ ++++.++|-||..|-.++-.......=+ . .+ +...|+..++. .+|++...|+++|++.
T Consensus 127 g~~l~t-GsGD~TvR~WD~~TeTp~~t~KgH~~WV-l---cv----awsPDgk~iASG~~dg~I~lwdpktg~~~ 192 (480)
T KOG0271|consen 127 GSRLVT-GSGDTTVRLWDLDTETPLFTCKGHKNWV-L---CV----AWSPDGKKIASGSKDGSIRLWDPKTGQQI 192 (480)
T ss_pred CceEEe-cCCCceEEeeccCCCCcceeecCCccEE-E---EE----EECCCcchhhccccCCeEEEecCCCCCcc
Confidence 344444 4456899999999988887766554311 1 11 12224555554 3899999999998764
No 170
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=58.31 E-value=2.8e+02 Score=30.33 Aligned_cols=181 Identities=15% Similarity=0.292 Sum_probs=83.6
Q ss_pred eeeccccceeEEEeccCcee-eeeeeeeccCCCEEEEEeCCCEEEEEECcCCccceEEEcCCc-ceeeeeeeeeCCEEEE
Q 003792 23 LYEDQVGLMDWHQQYIGKVK-HAVFHTQKTGRKRVVVSTEENVIASLDLRHGEIFWRHVLGIN-DVVDGIDIALGKYVIT 100 (795)
Q Consensus 23 l~edq~G~~dW~~~~vG~~~-~~~f~~~~~~~~~v~vat~~g~l~ALn~~tG~ivWR~~l~~~-~~i~~l~~~~g~~~V~ 100 (795)
++....|-..|..-.+..+. ...|.-....++.+++++..|.|+.= .||-.-|+...... +.+.......++..|.
T Consensus 83 ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~~~G~iy~T--~DgG~tW~~~~~~~~gs~~~~~r~~dG~~va 160 (302)
T PF14870_consen 83 LLHTTDGGKTWERVPLSSKLPGSPFGITALGDGSAELAGDRGAIYRT--TDGGKTWQAVVSETSGSINDITRSSDGRYVA 160 (302)
T ss_dssp EEEESSTTSS-EE----TT-SS-EEEEEEEETTEEEEEETT--EEEE--SSTTSSEEEEE-S----EEEEEE-TTS-EEE
T ss_pred EEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEEEcCCCcEEEe--CCCCCCeeEcccCCcceeEeEEECCCCcEEE
Confidence 44444555678763222111 01111112235567777888776654 57888999877544 2333332234455677
Q ss_pred EEccCCeEEEEeCCCCcEeEEEeccCccccCCceeccccccccCCCeEEEE-eCCEEEEEECCCCcEEEEEeccCcceee
Q 003792 101 LSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVS-SKGCLHAVSSIDGEILWTRDFAAESVEV 179 (795)
Q Consensus 101 Vs~~g~~v~A~d~~tG~llWe~~~~~~~~s~~~~~~~~~~~~~~~~~V~V~-~~g~l~ald~~tG~~~W~~~~~~~~~~~ 179 (795)
|+..|..+..||. |+--|+..-.... ..+..++ ...++.+.+. .+|.|+.-+..+....|..........-
T Consensus 161 vs~~G~~~~s~~~--G~~~w~~~~r~~~--~riq~~g----f~~~~~lw~~~~Gg~~~~s~~~~~~~~w~~~~~~~~~~~ 232 (302)
T PF14870_consen 161 VSSRGNFYSSWDP--GQTTWQPHNRNSS--RRIQSMG----FSPDGNLWMLARGGQIQFSDDPDDGETWSEPIIPIKTNG 232 (302)
T ss_dssp EETTSSEEEEE-T--T-SS-EEEE--SS--S-EEEEE----E-TTS-EEEEETTTEEEEEE-TTEEEEE---B-TTSS--
T ss_pred EECcccEEEEecC--CCccceEEccCcc--ceehhce----ecCCCCEEEEeCCcEEEEccCCCCccccccccCCcccCc
Confidence 7888878888875 8889986543221 2233332 1224556555 5888888875556677887543221111
Q ss_pred eeEEE--EecCCEEEEEEecCCceeEEEEEEcCCCceeeeee
Q 003792 180 QQVIQ--LDESDQIYVVGYAGSSQFHAYQINAMNGELLNHET 219 (795)
Q Consensus 180 ~~vv~--s~~~~~Vyvv~~~g~~~~~v~ald~~tG~~~w~~~ 219 (795)
..+++ -..++.+++++-.|. ++ .. .+|-.-|+..
T Consensus 233 ~~~ld~a~~~~~~~wa~gg~G~----l~-~S-~DgGktW~~~ 268 (302)
T PF14870_consen 233 YGILDLAYRPPNEIWAVGGSGT----LL-VS-TDGGKTWQKD 268 (302)
T ss_dssp S-EEEEEESSSS-EEEEESTT-----EE-EE-SSTTSS-EE-
T ss_pred eeeEEEEecCCCCEEEEeCCcc----EE-Ee-CCCCccceEC
Confidence 22221 145788998876662 22 23 3455567764
No 171
>KOG1027 consensus Serine/threonine protein kinase and endoribonuclease ERN1/IRE1, sensor of the unfolded protein response pathway [Signal transduction mechanisms]
Probab=57.54 E-value=41 Score=41.18 Aligned_cols=108 Identities=16% Similarity=0.241 Sum_probs=64.8
Q ss_pred CCCEEEEEeCCCEEEEEECcCCccceEEEcCCcceeeeeeeeeCCEEEEEEccCCeEEEEeCCCCcEeEEEeccCccccC
Q 003792 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSK 131 (795)
Q Consensus 52 ~~~~v~vat~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~~~~~~~s~ 131 (795)
.++.+|.++.++.-+-+|++||+..|.....++ +..+ +..+..-++| .-.|.++=...|......... .
T Consensus 106 sdGi~ysg~k~d~~~lvD~~tg~~~~tf~~~~~--~~~~-v~~grt~ytv-------~m~d~~~~~~~wn~t~~dy~a-~ 174 (903)
T KOG1027|consen 106 SDGILYSGSKQDIWYLVDPKTGEIDYTFNTAEP--IKQL-VYLGRTNYTV-------TMYDKNVRGKTWNTTFGDYSA-Q 174 (903)
T ss_pred CCCeEEecccccceEEecCCccceeEEEecCCc--chhh-eecccceeEE-------ecccCcccCceeeccccchhc-c
Confidence 477799999999999999999999999888764 3322 2223222222 222333334445544433221 0
Q ss_pred CceeccccccccCCCeEEE--EeCCEEEEEECCCCcEEEEEeccCcc
Q 003792 132 PLLLVPTNLKVDKDSLILV--SSKGCLHAVSSIDGEILWTRDFAAES 176 (795)
Q Consensus 132 ~~~~~~~~~~~~~~~~V~V--~~~g~l~ald~~tG~~~W~~~~~~~~ 176 (795)
.++-. .+.....+ .++|-+.-+|.++|+.+|.-+...+.
T Consensus 175 ~~~~~------~~~~~~~~~~~~~g~i~t~D~~~g~~~~~q~~~spv 215 (903)
T KOG1027|consen 175 YPSGV------RGEKMSHFHSLGNGYIVTVDSESGEKLWLQDLLSPV 215 (903)
T ss_pred CCCcc------CCceeEEEeecCCccEEeccCcccceeeccccCCce
Confidence 00011 11122222 24777888999999999998877654
No 172
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=57.51 E-value=1.7e+02 Score=35.47 Aligned_cols=185 Identities=9% Similarity=0.171 Sum_probs=98.4
Q ss_pred CCEEEEEeCCCEEEEEECcCCcc---ceEEEcCCcceeeeeeee-eCCEEEEEEccCCeEEEEeCCCCcEeEEEeccCcc
Q 003792 53 RKRVVVSTEENVIASLDLRHGEI---FWRHVLGINDVVDGIDIA-LGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSK 128 (795)
Q Consensus 53 ~~~v~vat~~g~l~ALn~~tG~i---vWR~~l~~~~~i~~l~~~-~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~~~~~~ 128 (795)
...++.+..++.+.+.|..++.. .|+-..+ .+.++... .+..+++++ .+..+..||..+=+.+=..++....
T Consensus 161 ~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S---~vtsL~~~~d~~~~ls~~-RDkvi~vwd~~~~~~l~~lp~ye~~ 236 (775)
T KOG0319|consen 161 RWLLASGATDGTVRVWNLNDKRTCLHTMILHKS---AVTSLAFSEDSLELLSVG-RDKVIIVWDLVQYKKLKTLPLYESL 236 (775)
T ss_pred hhheeecCCCceEEEEEcccCchHHHHHHhhhh---heeeeeeccCCceEEEec-cCcEEEEeehhhhhhhheechhhhe
Confidence 34478888999999999998876 3443332 23334222 344455544 4679999998655544333332221
Q ss_pred ccCCceeccccccccCC-CeEEEE-eCCEEEEEECCCCcEEEEEeccC-cceeeeeEEEEecCCEEEEEEecCCceeEEE
Q 003792 129 HSKPLLLVPTNLKVDKD-SLILVS-SKGCLHAVSSIDGEILWTRDFAA-ESVEVQQVIQLDESDQIYVVGYAGSSQFHAY 205 (795)
Q Consensus 129 ~s~~~~~~~~~~~~~~~-~~V~V~-~~g~l~ald~~tG~~~W~~~~~~-~~~~~~~vv~s~~~~~Vyvv~~~g~~~~~v~ 205 (795)
- +..... ...++. ..++.. ..|.+.-.|.++|+.+-+.+.+. +.. ..+......+.++.+...- .+.
T Consensus 237 E--~vv~l~--~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~--~~~~~~~~~~~~l~vtaeQ----nl~ 306 (775)
T KOG0319|consen 237 E--SVVRLR--EELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEI--DHLLAIESMSQLLLVTAEQ----NLF 306 (775)
T ss_pred e--eEEEec--hhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhh--hcceeccccCceEEEEccc----eEE
Confidence 1 111111 001111 233333 58899999999999887776653 221 2222234455555555442 466
Q ss_pred EEEcCCCceeeeeeeeccCCcccceEEecC--cEEEEEECCCCeEEEEEee
Q 003792 206 QINAMNGELLNHETAAFSGGFVGDVALVSS--DTLVTLDTTRSILVTVSFK 254 (795)
Q Consensus 206 ald~~tG~~~w~~~v~~~~~~~~~~~~vg~--~~lv~~d~~~~~L~v~~l~ 254 (795)
-+|..++++..+.- .-...+.. +-+.|. +.++++ ++.+.|.+.++.
T Consensus 307 l~d~~~l~i~k~iv-G~ndEI~D-m~~lG~e~~~laVA-TNs~~lr~y~~~ 354 (775)
T KOG0319|consen 307 LYDEDELTIVKQIV-GYNDEILD-MKFLGPEESHLAVA-TNSPELRLYTLP 354 (775)
T ss_pred EEEccccEEehhhc-CCchhhee-eeecCCccceEEEE-eCCCceEEEecC
Confidence 66888888876652 11222322 333342 233333 245666666543
No 173
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=57.33 E-value=4e+02 Score=31.72 Aligned_cols=180 Identities=12% Similarity=0.109 Sum_probs=98.9
Q ss_pred CCEEEEEeCCCEEEEEECcCCccceEEEcCCcceeeeeeeeeCCEEEEEE-ccCCeEEEEeCCCCcEeEEEeccCccccC
Q 003792 53 RKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLS-SDGSTLRAWNLPDGQMVWESFLRGSKHSK 131 (795)
Q Consensus 53 ~~~v~vat~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs-~~g~~v~A~d~~tG~llWe~~~~~~~~s~ 131 (795)
++.++.++.+..+---|.++|+-.=-...-. ..+.. ....+ .+.++ +.+.+|++||..+|+.+=........+
T Consensus 261 ~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~-stv~~--~~~~~-~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V-- 334 (537)
T KOG0274|consen 261 GDKLVSGSTDKTERVWDCSTGECTHSLQGHT-SSVRC--LTIDP-FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPV-- 334 (537)
T ss_pred CCEEEEEecCCcEEeEecCCCcEEEEecCCC-ceEEE--EEccC-ceEeeccCCceEEEEeccCcceEEEeccccccE--
Confidence 5566777777777666666665433322111 11111 12333 34444 457899999999999886655333222
Q ss_pred CceeccccccccCCCeEEEE-eCCEEEEEECCCCcEEEEEeccCcceeeeeEEEEecC-CEEEEEEecCCceeEEEEEEc
Q 003792 132 PLLLVPTNLKVDKDSLILVS-SKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDES-DQIYVVGYAGSSQFHAYQINA 209 (795)
Q Consensus 132 ~~~~~~~~~~~~~~~~V~V~-~~g~l~ald~~tG~~~W~~~~~~~~~~~~~vv~s~~~-~~Vyvv~~~g~~~~~v~ald~ 209 (795)
-.+ ....+.++.. .+|.+...|..+|+.+=+....... .+.+. .++ +.+|-.+.++ .+-+.|+
T Consensus 335 --~~v-----~~~~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~--V~sl~--~~~~~~~~Sgs~D~----~IkvWdl 399 (537)
T KOG0274|consen 335 --NCV-----QLDEPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGR--VYSLI--VDSENRLLSGSLDT----TIKVWDL 399 (537)
T ss_pred --EEE-----EecCCEEEEEecCceEEEEEhhhceeeeeecCCcce--EEEEE--ecCcceEEeeeecc----ceEeecC
Confidence 111 1113334444 4888888888888877666543322 22221 234 5666655564 5777788
Q ss_pred CCC-ceeeeeeeeccCCcccceEEecCcEEEEEECCCCeEEEEEeecCe
Q 003792 210 MNG-ELLNHETAAFSGGFVGDVALVSSDTLVTLDTTRSILVTVSFKNRK 257 (795)
Q Consensus 210 ~tG-~~~w~~~v~~~~~~~~~~~~vg~~~lv~~d~~~~~L~v~~l~sg~ 257 (795)
.++ +.+-... .+..+. ..+...++.+++... .+.+.+-|.+++.
T Consensus 400 ~~~~~c~~tl~--~h~~~v-~~l~~~~~~Lvs~~a-D~~Ik~WD~~~~~ 444 (537)
T KOG0274|consen 400 RTKRKCIHTLQ--GHTSLV-SSLLLRDNFLVSSSA-DGTIKLWDAEEGE 444 (537)
T ss_pred Cchhhhhhhhc--CCcccc-cccccccceeEeccc-cccEEEeecccCc
Confidence 787 3332221 111222 122234567776654 4678888888876
No 174
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=56.87 E-value=4.5e+02 Score=32.19 Aligned_cols=104 Identities=16% Similarity=0.156 Sum_probs=62.9
Q ss_pred EEEEeCCCEEEEEECcCCccceEEEcCCc-------ceeeeeeeeeCCEEEEEEccCCeEEEEeCCCCcEeEEEeccCcc
Q 003792 56 VVVSTEENVIASLDLRHGEIFWRHVLGIN-------DVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSK 128 (795)
Q Consensus 56 v~vat~~g~l~ALn~~tG~ivWR~~l~~~-------~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~~~~~~ 128 (795)
++.+.....+++|+. +|+..=+-..-.. ..+.++. ...+..++.|+.|+.+--||..+++-+-...-. ..
T Consensus 339 v~l~nNtv~~ysl~~-s~~~~p~~~~~~~i~~~GHR~dVRsl~-vS~d~~~~~Sga~~SikiWn~~t~kciRTi~~~-y~ 415 (888)
T KOG0306|consen 339 VLLANNTVEWYSLEN-SGKTSPEADRTSNIEIGGHRSDVRSLC-VSSDSILLASGAGESIKIWNRDTLKCIRTITCG-YI 415 (888)
T ss_pred EEeecCceEEEEecc-CCCCCccccccceeeeccchhheeEEE-eecCceeeeecCCCcEEEEEccCcceeEEeccc-cE
Confidence 455555678999998 6766411000000 0122332 234455666777789999999999988776644 22
Q ss_pred ccCCceeccccccccCCCeEEEE-eCCEEEEEECCCCcEEEEE
Q 003792 129 HSKPLLLVPTNLKVDKDSLILVS-SKGCLHAVSSIDGEILWTR 170 (795)
Q Consensus 129 ~s~~~~~~~~~~~~~~~~~V~V~-~~g~l~ald~~tG~~~W~~ 170 (795)
+ ...++| ++..|++. .+|+|..+|.+++..+=+.
T Consensus 416 l--~~~Fvp------gd~~Iv~G~k~Gel~vfdlaS~~l~Eti 450 (888)
T KOG0306|consen 416 L--ASKFVP------GDRYIVLGTKNGELQVFDLASASLVETI 450 (888)
T ss_pred E--EEEecC------CCceEEEeccCCceEEEEeehhhhhhhh
Confidence 2 223444 25566665 5999999999888755333
No 175
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=56.74 E-value=1.6e+02 Score=34.20 Aligned_cols=112 Identities=18% Similarity=0.245 Sum_probs=67.9
Q ss_pred cCCCEEEEEeCCCEEEEEECcCCccceEEEcCCcceeeeeeeeeCCEEEEEEccCCeEEEEeCCCCcEeEEEeccCcccc
Q 003792 51 TGRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHS 130 (795)
Q Consensus 51 ~~~~~v~vat~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~~~~~~~s 130 (795)
++.+..|..-.+|.|+-.|..+-.++ |+--+-.+....+.+..++..+.-+|-++.||.||...|+.+=+..+.+..+
T Consensus 519 pDakvcFsccsdGnI~vwDLhnq~~V-rqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIf- 596 (705)
T KOG0639|consen 519 PDAKVCFSCCSDGNIAVWDLHNQTLV-RQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIF- 596 (705)
T ss_pred CccceeeeeccCCcEEEEEcccceee-ecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhhhhhe-
Confidence 34555666677889998888764433 4333333323333222334445546667899999999999999988887665
Q ss_pred CCceeccccccccCCCeEEEE-eCCEEEEEECCCCcEEEEEec
Q 003792 131 KPLLLVPTNLKVDKDSLILVS-SKGCLHAVSSIDGEILWTRDF 172 (795)
Q Consensus 131 ~~~~~~~~~~~~~~~~~V~V~-~~g~l~ald~~tG~~~W~~~~ 172 (795)
.+...|. ++=|.|. .++.+-.+. .+|..+.+...
T Consensus 597 -SLg~cP~------~dWlavGMens~vevlh-~skp~kyqlhl 631 (705)
T KOG0639|consen 597 -SLGYCPT------GDWLAVGMENSNVEVLH-TSKPEKYQLHL 631 (705)
T ss_pred -ecccCCC------ccceeeecccCcEEEEe-cCCccceeecc
Confidence 3334441 2334454 466666666 45666655544
No 176
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=56.59 E-value=2.7e+02 Score=30.34 Aligned_cols=101 Identities=11% Similarity=0.018 Sum_probs=57.0
Q ss_pred CCEEEEEeCCCEEEEEECcCCccceEEEcCCcceeeeeeeeeCCEEEEEEccCCeEEEEeCCCCcEeEEEeccCccccCC
Q 003792 53 RKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKP 132 (795)
Q Consensus 53 ~~~v~vat~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~~~~~~~s~~ 132 (795)
...+++++-+|.|-.+|..+|...==. ...+.+..+...-..+.|+-++.++++..||+..-...=......
T Consensus 65 ~~~~~~G~~dg~vr~~Dln~~~~~~ig--th~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~k------ 136 (323)
T KOG1036|consen 65 ESTIVTGGLDGQVRRYDLNTGNEDQIG--THDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGK------ 136 (323)
T ss_pred CceEEEeccCceEEEEEecCCcceeec--cCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCc------
Confidence 567999999999999999888653211 111224444222344555547778999999997622211111111
Q ss_pred ceeccccccccCCCeEEEE-eCCEEEEEECCCCc
Q 003792 133 LLLVPTNLKVDKDSLILVS-SKGCLHAVSSIDGE 165 (795)
Q Consensus 133 ~~~~~~~~~~~~~~~V~V~-~~g~l~ald~~tG~ 165 (795)
-+.. ....++.++|. .+..+.-+|..+=.
T Consensus 137 -kVy~---~~v~g~~LvVg~~~r~v~iyDLRn~~ 166 (323)
T KOG1036|consen 137 -KVYC---MDVSGNRLVVGTSDRKVLIYDLRNLD 166 (323)
T ss_pred -eEEE---EeccCCEEEEeecCceEEEEEccccc
Confidence 1111 11114555564 57778878776544
No 177
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=56.25 E-value=3.2e+02 Score=30.33 Aligned_cols=192 Identities=13% Similarity=0.170 Sum_probs=93.1
Q ss_pred EEEEEeCC-----C-EEEEEECcCCccceEEEcCCcceeeeeeeeeCCEEEEEEc-c--CCe--EEEEeCCCCcEeEEEe
Q 003792 55 RVVVSTEE-----N-VIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSS-D--GST--LRAWNLPDGQMVWESF 123 (795)
Q Consensus 55 ~v~vat~~-----g-~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~-~--g~~--v~A~d~~tG~llWe~~ 123 (795)
.+|++|.. | .+.-||.++|++-=-+.....++..-+...-.++.+|+.. . .+. .+.||..+|++---..
T Consensus 4 ~~YiGtyT~~~s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~ 83 (346)
T COG2706 4 TVYIGTYTKRESQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNR 83 (346)
T ss_pred EEEEeeecccCCCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeec
Confidence 46777643 2 3566777777654434333333333332223444555532 2 233 5667777799876655
Q ss_pred ccCccccCCceeccccccccCCC-eEEEE--eCCEEEEEEC-CCCcEEEEE---eccCcceeeeeE------EEE-ecCC
Q 003792 124 LRGSKHSKPLLLVPTNLKVDKDS-LILVS--SKGCLHAVSS-IDGEILWTR---DFAAESVEVQQV------IQL-DESD 189 (795)
Q Consensus 124 ~~~~~~s~~~~~~~~~~~~~~~~-~V~V~--~~g~l~ald~-~tG~~~W~~---~~~~~~~~~~~v------v~s-~~~~ 189 (795)
...+. .++..+ ..+.++ .|++. ..|.+..+-. ++|.+.=.. ....+.-.++|- ... ..+.
T Consensus 84 ~~~~g--~~p~yv----svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~ 157 (346)
T COG2706 84 QTLPG--SPPCYV----SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGR 157 (346)
T ss_pred cccCC--CCCeEE----EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCC
Confidence 44332 122233 334444 56665 3777777766 446543211 111110001221 111 2333
Q ss_pred EEEEEEecCCceeEEEEEEcCCCceeeeeeeeccCCcccceEEe--cCcEEEEEECCCCeEEEEEeec
Q 003792 190 QIYVVGYAGSSQFHAYQINAMNGELLNHETAAFSGGFVGDVALV--SSDTLVTLDTTRSILVTVSFKN 255 (795)
Q Consensus 190 ~Vyvv~~~g~~~~~v~ald~~tG~~~w~~~v~~~~~~~~~~~~v--g~~~lv~~d~~~~~L~v~~l~s 255 (795)
.|++..+ |.. +++.++...|+..-......+.+--...++. .+.+.+|+..-++.+-+.....
T Consensus 158 ~l~v~DL-G~D--ri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~ 222 (346)
T COG2706 158 YLVVPDL-GTD--RIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNP 222 (346)
T ss_pred EEEEeec-CCc--eEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcC
Confidence 4555443 333 5666666688876544333332221123332 5567777766667777776665
No 178
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=55.24 E-value=1.3e+02 Score=33.14 Aligned_cols=64 Identities=13% Similarity=0.078 Sum_probs=45.7
Q ss_pred EEE-EeCCEEEEEECCCCcEEEEEeccCcceeeeeEEEEecCCEEEEEEecCCceeEEEEEEcCCCcee
Q 003792 148 ILV-SSKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELL 215 (795)
Q Consensus 148 V~V-~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~vv~s~~~~~Vyvv~~~g~~~~~v~ald~~tG~~~ 215 (795)
|.| +++|.+..+|..+|+.+=+++.+.+.....+++...++..|+..+.+| .|..+|+.+-...
T Consensus 43 vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG----~Vr~wD~Rs~~e~ 107 (376)
T KOG1188|consen 43 VAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDG----TVRLWDIRSQAES 107 (376)
T ss_pred EEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCC----eEEEEEeecchhh
Confidence 455 489999999999999998888776655433443222567788777777 6888888765544
No 179
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=54.59 E-value=3.8e+02 Score=30.60 Aligned_cols=134 Identities=13% Similarity=0.152 Sum_probs=67.1
Q ss_pred eeeccccceeEEEeccCceeee--eeeeecc---CCCEEEEEeCCCEEEEEECcCCccceEEEcCCc----c---eeeee
Q 003792 23 LYEDQVGLMDWHQQYIGKVKHA--VFHTQKT---GRKRVVVSTEENVIASLDLRHGEIFWRHVLGIN----D---VVDGI 90 (795)
Q Consensus 23 l~edq~G~~dW~~~~vG~~~~~--~f~~~~~---~~~~v~vat~~g~l~ALn~~tG~ivWR~~l~~~----~---~i~~l 90 (795)
..+++.| .-|++.. .|..+ .+..... +.++-++....|.|.. .+||-.-|++..... + ....+
T Consensus 68 ~~~~d~G-~~W~q~~--~p~~~~~~L~~V~F~~~d~~~GwAVG~~G~IL~--T~DGG~tW~~~~~~~~~~~~~~~~l~~v 142 (398)
T PLN00033 68 ADAAEQS-SEWEQVD--LPIDPGVVLLDIAFVPDDPTHGFLLGTRQTLLE--TKDGGKTWVPRSIPSAEDEDFNYRFNSI 142 (398)
T ss_pred cccccCC-CccEEee--cCCCCCCceEEEEeccCCCCEEEEEcCCCEEEE--EcCCCCCceECccCcccccccccceeee
Confidence 3333344 4699876 34322 2222222 3556777777887644 458999999854211 1 11222
Q ss_pred eeeeCCEEEEEEccCCeEEEEeCCCCcEeEEEeccCccccCCceeccccccccCCCeEEE-EeCCEEEEEECCCCcEEEE
Q 003792 91 DIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILV-SSKGCLHAVSSIDGEILWT 169 (795)
Q Consensus 91 ~~~~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~~~~~~~s~~~~~~~~~~~~~~~~~V~V-~~~g~l~ald~~tG~~~W~ 169 (795)
.. .++..++++ .. -..+-..||-.-|+............... ....++..++ ...|.+++- .+|-..|+
T Consensus 143 ~f-~~~~g~~vG-~~--G~il~T~DgG~tW~~~~~~~~~p~~~~~i----~~~~~~~~~ivg~~G~v~~S--~D~G~tW~ 212 (398)
T PLN00033 143 SF-KGKEGWIIG-KP--AILLHTSDGGETWERIPLSPKLPGEPVLI----KATGPKSAEMVTDEGAIYVT--SNAGRNWK 212 (398)
T ss_pred EE-ECCEEEEEc-Cc--eEEEEEcCCCCCceECccccCCCCCceEE----EEECCCceEEEeccceEEEE--CCCCCCce
Confidence 12 344444433 32 36667789999998754321110111111 1111333333 345655444 46777888
Q ss_pred Ee
Q 003792 170 RD 171 (795)
Q Consensus 170 ~~ 171 (795)
..
T Consensus 213 ~~ 214 (398)
T PLN00033 213 AA 214 (398)
T ss_pred Ec
Confidence 64
No 180
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=53.93 E-value=3.3e+02 Score=29.87 Aligned_cols=58 Identities=14% Similarity=0.090 Sum_probs=33.3
Q ss_pred EEEEEccCCeEEEEeCCCC-cEeEEEeccCccccCCceeccccccccCCCeEEEEeCCEEEEEECCCCcE
Q 003792 98 VITLSSDGSTLRAWNLPDG-QMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSSKGCLHAVSSIDGEI 166 (795)
Q Consensus 98 ~V~Vs~~g~~v~A~d~~tG-~llWe~~~~~~~~s~~~~~~~~~~~~~~~~~V~V~~~g~l~ald~~tG~~ 166 (795)
++++--.+++++.||+.+| ...|...-.-... . ..+ .+..++.....++.++.++|..
T Consensus 39 L~w~DI~~~~i~r~~~~~g~~~~~~~p~~~~~~----~------~~d-~~g~Lv~~~~g~~~~~~~~~~~ 97 (307)
T COG3386 39 LLWVDILGGRIHRLDPETGKKRVFPSPGGFSSG----A------LID-AGGRLIACEHGVRLLDPDTGGK 97 (307)
T ss_pred EEEEeCCCCeEEEecCCcCceEEEECCCCcccc----e------eec-CCCeEEEEccccEEEeccCCce
Confidence 4554445789999999988 5777765433211 1 223 2334444444556666566654
No 181
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=52.78 E-value=30 Score=37.28 Aligned_cols=74 Identities=12% Similarity=0.176 Sum_probs=50.5
Q ss_pred CCEEEEEeCCCEEEEEECc-CCccceEEEcCCc-c--eeeeeeeeeCCEEEEEEccCCeEEEEeCC-CCcEeEEEeccCc
Q 003792 53 RKRVVVSTEENVIASLDLR-HGEIFWRHVLGIN-D--VVDGIDIALGKYVITLSSDGSTLRAWNLP-DGQMVWESFLRGS 127 (795)
Q Consensus 53 ~~~v~vat~~g~l~ALn~~-tG~ivWR~~l~~~-~--~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~-tG~llWe~~~~~~ 127 (795)
.+.||.+++++.+.+.|.| .++-+|+..--.. + +|... + .....++.|+.+..++.||.. -|+++.+..+.++
T Consensus 178 pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss-~-~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GG 255 (339)
T KOG0280|consen 178 PNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSS-P-PKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGG 255 (339)
T ss_pred CceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecC-C-CCCceEEEeccccceeeeehhcccCccccCccccc
Confidence 3569999999999999999 8889998433211 1 22222 1 123355657788899999987 6777766665544
Q ss_pred c
Q 003792 128 K 128 (795)
Q Consensus 128 ~ 128 (795)
+
T Consensus 256 V 256 (339)
T KOG0280|consen 256 V 256 (339)
T ss_pred e
Confidence 4
No 182
>PLN02153 epithiospecifier protein
Probab=52.52 E-value=3.5e+02 Score=29.65 Aligned_cols=155 Identities=12% Similarity=0.114 Sum_probs=75.8
Q ss_pred CCEEEEEeCC------CEEEEEECcCCccceEEEcCC-----ccee-eeeeeeeCCEEEEEEccC-----------CeEE
Q 003792 53 RKRVVVSTEE------NVIASLDLRHGEIFWRHVLGI-----NDVV-DGIDIALGKYVITLSSDG-----------STLR 109 (795)
Q Consensus 53 ~~~v~vat~~------g~l~ALn~~tG~ivWR~~l~~-----~~~i-~~l~~~~g~~~V~Vs~~g-----------~~v~ 109 (795)
+++||+.... +.+..+|+++. .|+..-.. +..- ....+..++.+++++|.. ..+.
T Consensus 85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~--~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~ 162 (341)
T PLN02153 85 GTKLYIFGGRDEKREFSDFYSYDTVKN--EWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIE 162 (341)
T ss_pred CCEEEEECCCCCCCccCcEEEEECCCC--EEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEE
Confidence 6778876542 46899999875 59864321 1111 111123455555556632 2477
Q ss_pred EEeCCCCcEeEEEeccCccccCCceeccccccccCCCeEEEEeC---------------CEEEEEECCCCcEEEEEeccC
Q 003792 110 AWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSSK---------------GCLHAVSSIDGEILWTRDFAA 174 (795)
Q Consensus 110 A~d~~tG~llWe~~~~~~~~s~~~~~~~~~~~~~~~~~V~V~~~---------------g~l~ald~~tG~~~W~~~~~~ 174 (795)
.||+.+. .|+..-..... ...-........ ++.++|..+ ..+.++|..+. .|+.-...
T Consensus 163 ~yd~~~~--~W~~l~~~~~~--~~~r~~~~~~~~-~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~--~W~~~~~~ 235 (341)
T PLN02153 163 AYNIADG--KWVQLPDPGEN--FEKRGGAGFAVV-QGKIWVVYGFATSILPGGKSDYESNAVQFFDPASG--KWTEVETT 235 (341)
T ss_pred EEECCCC--eEeeCCCCCCC--CCCCCcceEEEE-CCeEEEEeccccccccCCccceecCceEEEEcCCC--cEEecccc
Confidence 8998866 58853221100 000000000112 455666421 35788887764 48864321
Q ss_pred cce-eee-eEEEEecCCEEEEEEecC----------C-ceeEEEEEEcCCCceeeee
Q 003792 175 ESV-EVQ-QVIQLDESDQIYVVGYAG----------S-SQFHAYQINAMNGELLNHE 218 (795)
Q Consensus 175 ~~~-~~~-~vv~s~~~~~Vyvv~~~g----------~-~~~~v~ald~~tG~~~w~~ 218 (795)
+.. .+. ......-++.+|+.|-.. + ..-.++++|+.+. .|+.
T Consensus 236 g~~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~--~W~~ 290 (341)
T PLN02153 236 GAKPSARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETL--VWEK 290 (341)
T ss_pred CCCCCCcceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCcc--EEEe
Confidence 111 000 111123578888877531 0 0115788887654 4654
No 183
>PRK04792 tolB translocation protein TolB; Provisional
Probab=52.05 E-value=4.2e+02 Score=30.47 Aligned_cols=150 Identities=9% Similarity=0.077 Sum_probs=73.0
Q ss_pred eCCEEEEEEcc--CCeEEEEeCCCCcEeEEEeccCccccCCceeccccccccCCCeEEE-Ee-CC--EEEEEECCCCcEE
Q 003792 94 LGKYVITLSSD--GSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILV-SS-KG--CLHAVSSIDGEIL 167 (795)
Q Consensus 94 ~g~~~V~Vs~~--g~~v~A~d~~tG~llWe~~~~~~~~s~~~~~~~~~~~~~~~~~V~V-~~-~g--~l~ald~~tG~~~ 167 (795)
.|+.+++++.. ...|+.+|..+|+..--....+.. ..+... .+ ++.+++ .. +| .|+.+|..+|+..
T Consensus 228 DG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~--~~~~wS-----PD-G~~La~~~~~~g~~~Iy~~dl~tg~~~ 299 (448)
T PRK04792 228 DGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGIN--GAPRFS-----PD-GKKLALVLSKDGQPEIYVVDIATKALT 299 (448)
T ss_pred CCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCc--CCeeEC-----CC-CCEEEEEEeCCCCeEEEEEECCCCCeE
Confidence 56667776543 247999999999764322222211 112222 23 233433 33 44 5999999888642
Q ss_pred EEEeccCcceeeeeEEEEecCCEEEEEEecCCceeEEEEEEcCCCceeeeeeeeccCCcccceEEecCcEEEEEECCCC-
Q 003792 168 WTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAFSGGFVGDVALVSSDTLVTLDTTRS- 246 (795)
Q Consensus 168 W~~~~~~~~~~~~~vv~s~~~~~Vyvv~~~g~~~~~v~ald~~tG~~~w~~~v~~~~~~~~~~~~vg~~~lv~~d~~~~- 246 (795)
+ ..........+..+.++..+++.+..++ ...++.+|+.+|+...- ...... ........+++.+++.....+
T Consensus 300 -~--lt~~~~~~~~p~wSpDG~~I~f~s~~~g-~~~Iy~~dl~~g~~~~L-t~~g~~-~~~~~~SpDG~~l~~~~~~~g~ 373 (448)
T PRK04792 300 -R--ITRHRAIDTEPSWHPDGKSLIFTSERGG-KPQIYRVNLASGKVSRL-TFEGEQ-NLGGSITPDGRSMIMVNRTNGK 373 (448)
T ss_pred -E--CccCCCCccceEECCCCCEEEEEECCCC-CceEEEEECCCCCEEEE-ecCCCC-CcCeeECCCCCEEEEEEecCCc
Confidence 1 1111100111222334555655443322 24788899998875321 111111 111122224445555543333
Q ss_pred -eEEEEEeecCe
Q 003792 247 -ILVTVSFKNRK 257 (795)
Q Consensus 247 -~L~v~~l~sg~ 257 (795)
.++.+++.++.
T Consensus 374 ~~I~~~dl~~g~ 385 (448)
T PRK04792 374 FNIARQDLETGA 385 (448)
T ss_pred eEEEEEECCCCC
Confidence 56778888776
No 184
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.01 E-value=25 Score=39.06 Aligned_cols=73 Identities=14% Similarity=0.240 Sum_probs=50.6
Q ss_pred cCCCEEEEEeCCCEEEEEECcCCccceEEEcCCcceeeeeeeeeCCEEEEEEccCCeEEEEeCCCCcEeEEEe
Q 003792 51 TGRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESF 123 (795)
Q Consensus 51 ~~~~~v~vat~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~ 123 (795)
++.+.||+++..|.|+.+|.+.|+..=+.-=+-.+++.+++...+..++.-+|-++.||-+|..+-+++-...
T Consensus 257 p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvY 329 (412)
T KOG3881|consen 257 PSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVY 329 (412)
T ss_pred CCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhh
Confidence 3467799999999999999999987655333333456555433333455545668999999999866654433
No 185
>PF01453 B_lectin: D-mannose binding lectin; InterPro: IPR001480 A bulb lectin super-family (Amaryllidaceae, Orchidaceae and Aliaceae) contains a ~115-residue-long domain whose overall three dimensional fold is very similar to that of [, ]: Dictyostelium discoideum comitin, an actin binding protein Curculigo latifolia curculin, a sweet tasting and taste-modifying protein This domain generally binds mannose, but in at least one protein, curculin, it is apparently devoid of mannose-binding activity. Each bulb-type lectin domain consists of three sequential beta-sheet subdomains (I, II, III) that are inter-related by pseudo three-fold symmetry. The three subdomains are flat four-stranded, antiparrallel beta-sheets. Together they form a 12-stranded beta-barrel in which the barrel axis coincides with the pseudo 3-fold axis.; GO: 0005529 sugar binding; PDB: 3M7H_A 3M7J_B 3MEZ_D 1DLP_A 1BWU_D 1KJ1_A 1B2P_A 1XD6_A 2DPF_C 2D04_B ....
Probab=51.92 E-value=1.1e+02 Score=28.27 Aligned_cols=60 Identities=23% Similarity=0.528 Sum_probs=38.0
Q ss_pred CCEEEEEEccCCeEEEEeCCCCcEeEEEeccCccccCCceeccccccccCCCeEEEEeCCEEEEEECCCCcEEEEE
Q 003792 95 GKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSSKGCLHAVSSIDGEILWTR 170 (795)
Q Consensus 95 g~~~V~Vs~~g~~v~A~d~~tG~llWe~~~~~~~~s~~~~~~~~~~~~~~~~~V~V~~~g~l~ald~~tG~~~W~~ 170 (795)
+...+.+..+ +.+..+|.. |+.+|......... . . ...+.+..+|.|..+| .+|+++|+-
T Consensus 19 ~~~~L~l~~d-GnLvl~~~~-~~~iWss~~t~~~~-----~-~-------~~~~~L~~~GNlvl~d-~~~~~lW~S 78 (114)
T PF01453_consen 19 GNYTLILQSD-GNLVLYDSN-GSVIWSSNNTSGRG-----N-S-------GCYLVLQDDGNLVLYD-SSGNVLWQS 78 (114)
T ss_dssp TTEEEEEETT-SEEEEEETT-TEEEEE--S-TTSS-------S-------SEEEEEETTSEEEEEE-TTSEEEEES
T ss_pred ccccceECCC-CeEEEEcCC-CCEEEEecccCCcc-----c-c-------CeEEEEeCCCCEEEEe-ecceEEEee
Confidence 5667777875 478888875 88899983222110 0 0 1122333688888888 699999997
No 186
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=51.77 E-value=1.3e+02 Score=36.45 Aligned_cols=85 Identities=14% Similarity=0.151 Sum_probs=48.3
Q ss_pred EccCCeEEEEeCCCCcEeEEEeccCccccCCceeccccccccCCCeEEEE--eCCEEEEEECCCCcEEEEEeccCcceee
Q 003792 102 SSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVS--SKGCLHAVSSIDGEILWTRDFAAESVEV 179 (795)
Q Consensus 102 s~~g~~v~A~d~~tG~llWe~~~~~~~~s~~~~~~~~~~~~~~~~~V~V~--~~g~l~ald~~tG~~~W~~~~~~~~~~~ 179 (795)
++.+.+||.||..+|..+--+......+ ..+. ....+.-++. .+|.+.--|..+|+++=++....+. .
T Consensus 553 GSsD~tVRlWDv~~G~~VRiF~GH~~~V----~al~----~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~t--i 622 (707)
T KOG0263|consen 553 GSSDRTVRLWDVSTGNSVRIFTGHKGPV----TALA----FSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGT--I 622 (707)
T ss_pred CCCCceEEEEEcCCCcEEEEecCCCCce----EEEE----EcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCc--e
Confidence 5567899999999999987776554332 1221 1113333333 3777777788888776555444222 2
Q ss_pred eeEEEEecCCEEEEEEec
Q 003792 180 QQVIQLDESDQIYVVGYA 197 (795)
Q Consensus 180 ~~vv~s~~~~~Vyvv~~~ 197 (795)
..+.. .-+|.|.+++..
T Consensus 623 ~SlsF-S~dg~vLasgg~ 639 (707)
T KOG0263|consen 623 YSLSF-SRDGNVLASGGA 639 (707)
T ss_pred eEEEE-ecCCCEEEecCC
Confidence 33332 234555554433
No 187
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=51.68 E-value=4.2e+02 Score=30.32 Aligned_cols=76 Identities=11% Similarity=0.034 Sum_probs=53.9
Q ss_pred cCCCEEEEEeCCCEEEEEECcCCccceEEEcCCcc-eeeeeeeeeCCEEEEEE-ccCCeEEEEeCCCCcEeEEEeccCc
Q 003792 51 TGRKRVVVSTEENVIASLDLRHGEIFWRHVLGIND-VVDGIDIALGKYVITLS-SDGSTLRAWNLPDGQMVWESFLRGS 127 (795)
Q Consensus 51 ~~~~~v~vat~~g~l~ALn~~tG~ivWR~~l~~~~-~i~~l~~~~g~~~V~Vs-~~g~~v~A~d~~tG~llWe~~~~~~ 127 (795)
+.++.++-++.++..+=-|-++|+.+=.+.-+..+ .+... ...-++.++.. ..++.|+-||...+...=.++...+
T Consensus 313 ~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~-~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~ 390 (506)
T KOG0289|consen 313 PTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSA-AFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTG 390 (506)
T ss_pred cCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEe-eEcCCceEEeccCCCceEEEEEcCCccccccCCCCCC
Confidence 44777888999999999999999988877765332 22222 23455677764 4578999999999987666655443
No 188
>COG3419 PilY1 Tfp pilus assembly protein, tip-associated adhesin PilY1 [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=50.43 E-value=2.4e+02 Score=35.69 Aligned_cols=116 Identities=14% Similarity=0.143 Sum_probs=62.7
Q ss_pred EEEEEEccCCeEEEEeCCCCcEeEEEecc----------Cccc-c-----CCceecccccccc--CCCeEEEEe----CC
Q 003792 97 YVITLSSDGSTLRAWNLPDGQMVWESFLR----------GSKH-S-----KPLLLVPTNLKVD--KDSLILVSS----KG 154 (795)
Q Consensus 97 ~~V~Vs~~g~~v~A~d~~tG~llWe~~~~----------~~~~-s-----~~~~~~~~~~~~~--~~~~V~V~~----~g 154 (795)
-+|+|+..+++|+++|+.+|.++.-+--. .+.. . ...+.+.. ... .-+.|++.. +.
T Consensus 583 ~~VyvgandGmLhaFd~~tG~E~fA~~P~avl~~l~~~t~~~y~~h~yyVDg~p~~~d--a~~ng~wrsvL~g~~G~GG~ 660 (1036)
T COG3419 583 PVVYVGANDGMLHAFDANTGSERFAYVPSAVLSTLHSLTAPGYTAHQYYVDGSPTAAD--AYDNGQWRSVLVGGLGAGGR 660 (1036)
T ss_pred ceEEEecCCceeeeccCCccceeeecCcHHHHhhhhhhcCCCcccccceecCCceeeh--hhcCCcceEEEEeecCCCCc
Confidence 48899988899999999999999876511 0000 0 00011110 001 124567752 55
Q ss_pred EEEEEECCCC-----cEEEEEeccC-cce----eeeeEEEEecCCEEEEEEecC-Cc---eeEEEEEEcCCCcee
Q 003792 155 CLHAVSSIDG-----EILWTRDFAA-ESV----EVQQVIQLDESDQIYVVGYAG-SS---QFHAYQINAMNGELL 215 (795)
Q Consensus 155 ~l~ald~~tG-----~~~W~~~~~~-~~~----~~~~vv~s~~~~~Vyvv~~~g-~~---~~~v~ald~~tG~~~ 215 (795)
.++|||..+= +.+|+..... +.+ ..-+++. ..++.=+++--.| .+ ...++.+++.++...
T Consensus 661 glyALDVTdP~~~~~~~Lw~~~~~d~~~LG~t~gkP~Iv~-l~~gswavl~GNGynS~~n~~al~~~~L~t~~~~ 734 (1036)
T COG3419 661 GLYALDVTDPDFSNSNLLWENNSNDDPDLGYTMGKPRIVP-LHDGSWAVLLGNGYNSPANGAALLVLNLLTLDAT 734 (1036)
T ss_pred eeEEEEccCccccCCcchhcccCCCccccccccCCCeEEE-cCCCceEEEEccCCCCCCCCcceEEEEeecCCcc
Confidence 7999998654 4788876543 211 1112332 3444433333333 11 345666777777654
No 189
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=49.81 E-value=2.2e+02 Score=26.45 Aligned_cols=68 Identities=13% Similarity=0.139 Sum_probs=48.2
Q ss_pred CCEEEEEeCCCEEEEEECcCCccceEEEcCCcceeeeeeeeeCCEEEEEEccCCeEEEEeCCCCcEeEEEeccCc
Q 003792 53 RKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGS 127 (795)
Q Consensus 53 ~~~v~vat~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~~~~~ 127 (795)
.+.|+|+|++..|-.++ ..++++...-... +..+.....+...| +-.+|+|-.++. ...+|+..-...
T Consensus 15 ~~eLlvGs~D~~IRvf~--~~e~~~Ei~e~~~--v~~L~~~~~~~F~Y-~l~NGTVGvY~~--~~RlWRiKSK~~ 82 (111)
T PF14783_consen 15 ENELLVGSDDFEIRVFK--GDEIVAEITETDK--VTSLCSLGGGRFAY-ALANGTVGVYDR--SQRLWRIKSKNQ 82 (111)
T ss_pred cceEEEecCCcEEEEEe--CCcEEEEEecccc--eEEEEEcCCCEEEE-EecCCEEEEEeC--cceeeeeccCCC
Confidence 46799999999999996 4688888766554 44442223444555 444569999976 789999986554
No 190
>PRK01742 tolB translocation protein TolB; Provisional
Probab=49.74 E-value=4.4e+02 Score=30.00 Aligned_cols=144 Identities=12% Similarity=0.077 Sum_probs=67.2
Q ss_pred cCCCEEEEEeC---CCEEEEEECcCCccceEEEcCCcceeeeeee-eeCCEEEEEEccCC--eEEEEeCCCCcEeEEEec
Q 003792 51 TGRKRVVVSTE---ENVIASLDLRHGEIFWRHVLGINDVVDGIDI-ALGKYVITLSSDGS--TLRAWNLPDGQMVWESFL 124 (795)
Q Consensus 51 ~~~~~v~vat~---~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~-~~g~~~V~Vs~~g~--~v~A~d~~tG~llWe~~~ 124 (795)
+++++|+.++. ...|+.+|.++|+..--..++.. ...... +.|+.+++.+..++ .++.||..+|.+. +...
T Consensus 213 PDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~--~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~-~lt~ 289 (429)
T PRK01742 213 PDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH--NGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTPS-QLTS 289 (429)
T ss_pred CCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc--cCceeECCCCCEEEEEEecCCcEEEEEEECCCCCeE-eecc
Confidence 34556655543 24799999999875322222221 111111 24445555443333 4778888777643 1111
Q ss_pred cCccccCCceeccccccccCCCeEEEEe--CC--EEEEEECCCCcEEEEEeccCcceeeeeEEEEecCCEEEEEEecCCc
Q 003792 125 RGSKHSKPLLLVPTNLKVDKDSLILVSS--KG--CLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSS 200 (795)
Q Consensus 125 ~~~~~s~~~~~~~~~~~~~~~~~V~V~~--~g--~l~ald~~tG~~~W~~~~~~~~~~~~~vv~s~~~~~Vyvv~~~g~~ 200 (795)
..... ..+...+ + ++.++..+ +| .++.++..+|..... . ... . ....+.++..+++.+..
T Consensus 290 ~~~~~-~~~~wSp-----D-G~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~-~~~-~---~~~~SpDG~~ia~~~~~--- 353 (429)
T PRK01742 290 GAGNN-TEPSWSP-----D-GQSILFTSDRSGSPQVYRMSASGGGASLV-G-GRG-Y---SAQISADGKTLVMINGD--- 353 (429)
T ss_pred CCCCc-CCEEECC-----C-CCEEEEEECCCCCceEEEEECCCCCeEEe-c-CCC-C---CccCCCCCCEEEEEcCC---
Confidence 11111 1122222 2 22333322 22 677777666655432 1 111 1 11113355556554432
Q ss_pred eeEEEEEEcCCCcee
Q 003792 201 QFHAYQINAMNGELL 215 (795)
Q Consensus 201 ~~~v~ald~~tG~~~ 215 (795)
.+..+|+.+|+..
T Consensus 354 --~i~~~Dl~~g~~~ 366 (429)
T PRK01742 354 --NVVKQDLTSGSTE 366 (429)
T ss_pred --CEEEEECCCCCeE
Confidence 3566899999754
No 191
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=48.15 E-value=83 Score=33.06 Aligned_cols=83 Identities=17% Similarity=0.294 Sum_probs=52.0
Q ss_pred CCEEEEEEccCCeEEEEe--CCCCcEeEEEeccCccc-cCCceeccccccccCCCeEEEE--eCCEEEEEECCCCcEEEE
Q 003792 95 GKYVITLSSDGSTLRAWN--LPDGQMVWESFLRGSKH-SKPLLLVPTNLKVDKDSLILVS--SKGCLHAVSSIDGEILWT 169 (795)
Q Consensus 95 g~~~V~Vs~~g~~v~A~d--~~tG~llWe~~~~~~~~-s~~~~~~~~~~~~~~~~~V~V~--~~g~l~ald~~tG~~~W~ 169 (795)
.+...++-+.+-.|-||| ..+|.+.=+..+-.-.- +.--+..|.....+..+.++|. .+|+++.+|+.||+.+=+
T Consensus 169 ~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~e 248 (310)
T KOG4499|consen 169 AKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLE 248 (310)
T ss_pred CcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEE
Confidence 344555544466898888 88887654332210000 0001223333355667778885 589999999999999999
Q ss_pred EeccCcce
Q 003792 170 RDFAAESV 177 (795)
Q Consensus 170 ~~~~~~~~ 177 (795)
..+|.+..
T Consensus 249 iklPt~qi 256 (310)
T KOG4499|consen 249 IKLPTPQI 256 (310)
T ss_pred EEcCCCce
Confidence 99996543
No 192
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=46.68 E-value=2.8e+02 Score=33.79 Aligned_cols=142 Identities=12% Similarity=0.140 Sum_probs=82.2
Q ss_pred CEEEEEEcc-CCeEEEEeCCCCcEeEEEeccCccccCCceeccccccccCCCeEEEE-eCCEEEEEECCCCcEE--EEEe
Q 003792 96 KYVITLSSD-GSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVS-SKGCLHAVSSIDGEIL--WTRD 171 (795)
Q Consensus 96 ~~~V~Vs~~-g~~v~A~d~~tG~llWe~~~~~~~~s~~~~~~~~~~~~~~~~~V~V~-~~g~l~ald~~tG~~~--W~~~ 171 (795)
++-.|+||. ++++|.|+..+=+..-.+.+..-. .++...| + ++..+|+ .+|..+.++..+=+.. |...
T Consensus 421 DDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lI--TAvcy~P-----d-Gk~avIGt~~G~C~fY~t~~lk~~~~~~I~ 492 (712)
T KOG0283|consen 421 DDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLI--TAVCYSP-----D-GKGAVIGTFNGYCRFYDTEGLKLVSDFHIR 492 (712)
T ss_pred CCCcEeecccccceEEeecCcCeeEeehhhhhhh--eeEEecc-----C-CceEEEEEeccEEEEEEccCCeEEEeeeEe
Confidence 456667664 789999999999988888877432 3444544 4 4566666 5999888886665543 5555
Q ss_pred ccC------cceeeeeEEEEecCCEEEEEEecCCceeEEEEEEcCCCceeeeeeeec--cCCcccceEEecCcEEEEEEC
Q 003792 172 FAA------ESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAF--SGGFVGDVALVSSDTLVTLDT 243 (795)
Q Consensus 172 ~~~------~~~~~~~vv~s~~~~~Vyvv~~~g~~~~~v~ald~~tG~~~w~~~v~~--~~~~~~~~~~vg~~~lv~~d~ 243 (795)
... ..++-.|+.+ ...+.|.|.+.+. ++..+|..+=+++-.++-.. .+.+.++ +...+..+||..
T Consensus 493 ~~~~Kk~~~~rITG~Q~~p-~~~~~vLVTSnDS----rIRI~d~~~~~lv~KfKG~~n~~SQ~~As-fs~Dgk~IVs~s- 565 (712)
T KOG0283|consen 493 LHNKKKKQGKRITGLQFFP-GDPDEVLVTSNDS----RIRIYDGRDKDLVHKFKGFRNTSSQISAS-FSSDGKHIVSAS- 565 (712)
T ss_pred eccCccccCceeeeeEecC-CCCCeEEEecCCC----ceEEEeccchhhhhhhcccccCCcceeee-EccCCCEEEEee-
Confidence 442 1233445432 3455677766554 67777776666665554111 1222222 222455777776
Q ss_pred CCCeEEEEE
Q 003792 244 TRSILVTVS 252 (795)
Q Consensus 244 ~~~~L~v~~ 252 (795)
+...+++=.
T Consensus 566 eDs~VYiW~ 574 (712)
T KOG0283|consen 566 EDSWVYIWK 574 (712)
T ss_pred cCceEEEEe
Confidence 334444433
No 193
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=46.13 E-value=4.4e+02 Score=29.02 Aligned_cols=109 Identities=23% Similarity=0.300 Sum_probs=0.0
Q ss_pred CCEEEEEEccCCeEEEEeCCCCcEeEEEeccCccccCCceeccccccccCCCeEEEEe-CCEEEEEECCC---CcE----
Q 003792 95 GKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSS-KGCLHAVSSID---GEI---- 166 (795)
Q Consensus 95 g~~~V~Vs~~g~~v~A~d~~tG~llWe~~~~~~~~s~~~~~~~~~~~~~~~~~V~V~~-~g~l~ald~~t---G~~---- 166 (795)
|-.+.+-|..|..+|-||+.+|.++=|.+-..... .+.-.+...+ ...+.|.+ .|+|+-+...+ ++.
T Consensus 193 Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A----~iy~iaFSp~-~s~LavsSdKgTlHiF~l~~~~~~~~~~SS 267 (346)
T KOG2111|consen 193 GTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRA----DIYCIAFSPN-SSWLAVSSDKGTLHIFSLRDTENTEDESSS 267 (346)
T ss_pred ccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchh----eEEEEEeCCC-ccEEEEEcCCCeEEEEEeecCCCCcccccc
Q ss_pred -----------------EEEEeccCcceeeeeEEEEecCCEEEEEEecCCceeEEEEEEcCCC
Q 003792 167 -----------------LWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNG 212 (795)
Q Consensus 167 -----------------~W~~~~~~~~~~~~~vv~s~~~~~Vyvv~~~g~~~~~v~ald~~tG 212 (795)
.|++.++.+..-.... ....+.|.+++.+|. ..=..+++++|
T Consensus 268 l~~~~~~lpky~~S~wS~~~f~l~~~~~~~~~f--g~~~nsvi~i~~Dgs--y~k~~f~~~~~ 326 (346)
T KOG2111|consen 268 LSFKRLVLPKYFSSEWSFAKFQLPQGTQCIIAF--GSETNTVIAICADGS--YYKFKFDPKNG 326 (346)
T ss_pred ccccccccchhcccceeEEEEEccCCCcEEEEe--cCCCCeEEEEEeCCc--EEEEEeccccc
No 194
>smart00108 B_lectin Bulb-type mannose-specific lectin.
Probab=45.92 E-value=2.1e+02 Score=26.03 Aligned_cols=52 Identities=19% Similarity=0.409 Sum_probs=29.1
Q ss_pred eEEEEeCCCCcEeEEEeccCccccCCceeccccccccCCCeEEEEeCCEEEEEECCCCcEEEEEecc
Q 003792 107 TLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSSKGCLHAVSSIDGEILWTRDFA 173 (795)
Q Consensus 107 ~v~A~d~~tG~llWe~~~~~~~~s~~~~~~~~~~~~~~~~~V~V~~~g~l~ald~~tG~~~W~~~~~ 173 (795)
.+..++...+..+|......+.. . ...+.+..+|.|..++. +|.++|.....
T Consensus 31 nlV~~~~~~~~~vW~snt~~~~~-------------~-~~~l~l~~dGnLvl~~~-~g~~vW~S~t~ 82 (114)
T smart00108 31 NLILYKSSSRTVVWVANRDNPVS-------------D-SCTLTLQSDGNLVLYDG-DGRVVWSSNTT 82 (114)
T ss_pred EEEEEECCCCcEEEECCCCCCCC-------------C-CEEEEEeCCCCEEEEeC-CCCEEEEeccc
Confidence 44444443367888865443211 0 11222335888888774 58899986543
No 195
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=45.10 E-value=4.5e+02 Score=28.76 Aligned_cols=156 Identities=10% Similarity=0.010 Sum_probs=86.5
Q ss_pred CCCEEEEEeCCCEEEEEECcCCccceEEEcCCcceeeeeeeeeCCE-EEEE-EccCCeEEEEeCCCCcEeEEEeccCccc
Q 003792 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKY-VITL-SSDGSTLRAWNLPDGQMVWESFLRGSKH 129 (795)
Q Consensus 52 ~~~~v~vat~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~-~V~V-s~~g~~v~A~d~~tG~llWe~~~~~~~~ 129 (795)
++.+||.++-++.+--.|..+|++.==..-+ ..+...+-..+.. -..+ |+-+.+|+-||...-.++-+..+..-..
T Consensus 83 dgskVf~g~~Dk~~k~wDL~S~Q~~~v~~Hd--~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvY 160 (347)
T KOG0647|consen 83 DGSKVFSGGCDKQAKLWDLASGQVSQVAAHD--APVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVY 160 (347)
T ss_pred CCceEEeeccCCceEEEEccCCCeeeeeecc--cceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceee
Confidence 4667999999999999999999653222222 2244333222222 2333 5568899999999998988888876543
Q ss_pred cCCceeccccccccCCCeEEEE-eCCEEEEEECCCCcEEEEEeccCcceeeeeEEEEecCCEEEEEEecCCceeEEEEEE
Q 003792 130 SKPLLLVPTNLKVDKDSLILVS-SKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQIN 208 (795)
Q Consensus 130 s~~~~~~~~~~~~~~~~~V~V~-~~g~l~ald~~tG~~~W~~~~~~~~~~~~~vv~s~~~~~Vyvv~~~g~~~~~v~ald 208 (795)
.+.+. ....+|. .+..|..+++.+|-..-+.-...-.. ..+++-...+..-|++|.--| ++..-.
T Consensus 161 --a~Dv~--------~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~-Q~R~va~f~d~~~~alGsiEG---rv~iq~ 226 (347)
T KOG0647|consen 161 --AADVL--------YPMAVVATAERHIAVYNLENPPTEFKRIESPLKW-QTRCVACFQDKDGFALGSIEG---RVAIQY 226 (347)
T ss_pred --ehhcc--------CceeEEEecCCcEEEEEcCCCcchhhhhcCcccc-eeeEEEEEecCCceEeeeecc---eEEEEe
Confidence 11111 2233343 58889999998886433321111011 112322223334444443322 666666
Q ss_pred cCCCceeeeeeeecc
Q 003792 209 AMNGELLNHETAAFS 223 (795)
Q Consensus 209 ~~tG~~~w~~~v~~~ 223 (795)
...|.+....++.+.
T Consensus 227 id~~~~~~nFtFkCH 241 (347)
T KOG0647|consen 227 IDDPNPKDNFTFKCH 241 (347)
T ss_pred cCCCCccCceeEEEe
Confidence 666665444444443
No 196
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=44.94 E-value=3.7e+02 Score=34.32 Aligned_cols=147 Identities=10% Similarity=0.068 Sum_probs=73.6
Q ss_pred CEEEEEEccCCeEEEEeCCCCcEeEEEeccCccccCCceeccccccccCCCeEEEE-eCCEEEEEECCCCc-----EEEE
Q 003792 96 KYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVS-SKGCLHAVSSIDGE-----ILWT 169 (795)
Q Consensus 96 ~~~V~Vs~~g~~v~A~d~~tG~llWe~~~~~~~~s~~~~~~~~~~~~~~~~~V~V~-~~g~l~ald~~tG~-----~~W~ 169 (795)
.+.++++|+-+.||-||+..-...=..+..++.+ . ..+ +.....++.++++ .||.|..+|...-. -.|+
T Consensus 1177 ~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~-v--TaL--S~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R 1251 (1387)
T KOG1517|consen 1177 SGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTL-V--TAL--SADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYR 1251 (1387)
T ss_pred CCeEEecCCeeEEEEEecccceeEeecccCCCcc-c--eee--cccccCCceEEEeecCCceEEeecccCCccccceeec
Confidence 4566667766789999998777766666554433 1 111 1133333444444 59999999875543 3465
Q ss_pred EeccCcceeeeeEEEEecCCEEEEEEecCCceeEEEEEEcCCCceeeeeeeeccC--CcccceEEe--cCcEEEEEECCC
Q 003792 170 RDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAFSG--GFVGDVALV--SSDTLVTLDTTR 245 (795)
Q Consensus 170 ~~~~~~~~~~~~vv~s~~~~~Vyvv~~~g~~~~~v~ald~~tG~~~w~~~v~~~~--~~~~~~~~v--g~~~lv~~d~~~ 245 (795)
.....+...-.++- ...-+.++.++.+| .+.-+|+..-....-.++..++ |-.-.++.| -..+++|...
T Consensus 1252 ~h~~~~~Iv~~slq-~~G~~elvSgs~~G----~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-- 1324 (1387)
T KOG1517|consen 1252 EHNDVEPIVHLSLQ-RQGLGELVSGSQDG----DIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-- 1324 (1387)
T ss_pred ccCCcccceeEEee-cCCCcceeeeccCC----eEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc--
Confidence 44332222111121 01223455444455 6777787653222222333333 211133333 3456776642
Q ss_pred CeEEEEEee
Q 003792 246 SILVTVSFK 254 (795)
Q Consensus 246 ~~L~v~~l~ 254 (795)
+.+.+.++.
T Consensus 1325 q~ikIy~~~ 1333 (1387)
T KOG1517|consen 1325 QLIKIYSLS 1333 (1387)
T ss_pred ceEEEEecC
Confidence 445555543
No 197
>PRK04922 tolB translocation protein TolB; Provisional
Probab=44.01 E-value=5.4e+02 Score=29.33 Aligned_cols=149 Identities=13% Similarity=0.166 Sum_probs=72.3
Q ss_pred eCCEEEEEEcc--CCeEEEEeCCCCcEeEEEeccCccccCCceeccccccccCCCeEEE-Ee-C--CEEEEEECCCCcEE
Q 003792 94 LGKYVITLSSD--GSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILV-SS-K--GCLHAVSSIDGEIL 167 (795)
Q Consensus 94 ~g~~~V~Vs~~--g~~v~A~d~~tG~llWe~~~~~~~~s~~~~~~~~~~~~~~~~~V~V-~~-~--g~l~ald~~tG~~~ 167 (795)
.++.++|++.. ...++.||..+|+..--....+.. ..+.+. .+ ++.+++ .+ + ..|+.+|..+|+..
T Consensus 214 Dg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~--~~~~~S-----pD-G~~l~~~~s~~g~~~Iy~~d~~~g~~~ 285 (433)
T PRK04922 214 DGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGIN--GAPSFS-----PD-GRRLALTLSRDGNPEIYVMDLGSRQLT 285 (433)
T ss_pred CCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCc--cCceEC-----CC-CCEEEEEEeCCCCceEEEEECCCCCeE
Confidence 46667777632 357999999999865333222211 111122 23 233443 33 3 37999999988753
Q ss_pred EEEeccCcceeeeeEEEEecCCEEEEEEecCCceeEEEEEEcCCCceeeeeeeeccCCcccceEEe-cCcEEEEEECCCC
Q 003792 168 WTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAFSGGFVGDVALV-SSDTLVTLDTTRS 246 (795)
Q Consensus 168 W~~~~~~~~~~~~~vv~s~~~~~Vyvv~~~g~~~~~v~ald~~tG~~~w~~~v~~~~~~~~~~~~v-g~~~lv~~d~~~~ 246 (795)
=-........ .+..+.++..+++.+..++ ...++.+|..+|+...-. ........+.+- .++.++......+
T Consensus 286 ~lt~~~~~~~---~~~~spDG~~l~f~sd~~g-~~~iy~~dl~~g~~~~lt---~~g~~~~~~~~SpDG~~Ia~~~~~~~ 358 (433)
T PRK04922 286 RLTNHFGIDT---EPTWAPDGKSIYFTSDRGG-RPQIYRVAASGGSAERLT---FQGNYNARASVSPDGKKIAMVHGSGG 358 (433)
T ss_pred ECccCCCCcc---ceEECCCCCEEEEEECCCC-CceEEEEECCCCCeEEee---cCCCCccCEEECCCCCEEEEEECCCC
Confidence 2111111111 1111334555555443322 236888898888743211 111111122222 3445555443322
Q ss_pred --eEEEEEeecCe
Q 003792 247 --ILVTVSFKNRK 257 (795)
Q Consensus 247 --~L~v~~l~sg~ 257 (795)
.+++.++.++.
T Consensus 359 ~~~I~v~d~~~g~ 371 (433)
T PRK04922 359 QYRIAVMDLSTGS 371 (433)
T ss_pred ceeEEEEECCCCC
Confidence 57777777665
No 198
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=43.83 E-value=65 Score=23.17 Aligned_cols=31 Identities=13% Similarity=0.292 Sum_probs=24.5
Q ss_pred CCCEEEEEeC-CCEEEEEECcCCccceEEEcC
Q 003792 52 GRKRVVVSTE-ENVIASLDLRHGEIFWRHVLG 82 (795)
Q Consensus 52 ~~~~v~vat~-~g~l~ALn~~tG~ivWR~~l~ 82 (795)
+++++|++.. .+.|+.+|+++++++=+...+
T Consensus 2 d~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg 33 (42)
T TIGR02276 2 DGTKLYVTNSGSNTVSVIDTATNKVIATIPVG 33 (42)
T ss_pred CCCEEEEEeCCCCEEEEEECCCCeEEEEEECC
Confidence 3667999885 689999999999877666653
No 199
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=43.35 E-value=4.6e+02 Score=28.39 Aligned_cols=175 Identities=14% Similarity=0.121 Sum_probs=89.8
Q ss_pred EEEEEECcCCccceEEEcCCcceeeeeee-eeC------CEEEEEEcc---------C-CeEEEEeCCCC-------cEe
Q 003792 64 VIASLDLRHGEIFWRHVLGINDVVDGIDI-ALG------KYVITLSSD---------G-STLRAWNLPDG-------QMV 119 (795)
Q Consensus 64 ~l~ALn~~tG~ivWR~~l~~~~~i~~l~~-~~g------~~~V~Vs~~---------g-~~v~A~d~~tG-------~ll 119 (795)
.|--+|+.+.+++=++.|+....+..+.. ... ...++||.. . |+++.++...+ +++
T Consensus 3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i 82 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI 82 (321)
T ss_dssp EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence 46667888888888888877754432211 111 345555431 1 68999999885 333
Q ss_pred EEEeccCccccCCceeccccccccCCCeEEEEeCCEEEEEECCCCc-EEEEEeccCcceeeeeEEEEecCCEEEEEEecC
Q 003792 120 WESFLRGSKHSKPLLLVPTNLKVDKDSLILVSSKGCLHAVSSIDGE-ILWTRDFAAESVEVQQVIQLDESDQIYVVGYAG 198 (795)
Q Consensus 120 We~~~~~~~~s~~~~~~~~~~~~~~~~~V~V~~~g~l~ald~~tG~-~~W~~~~~~~~~~~~~vv~s~~~~~Vyvv~~~g 198 (795)
.+....++.. .+ ... .+.+++..++.|+.++....+ ..=......+.. ...+ ...++.+++.....
T Consensus 83 ~~~~~~g~V~----ai-----~~~-~~~lv~~~g~~l~v~~l~~~~~l~~~~~~~~~~~-i~sl--~~~~~~I~vgD~~~ 149 (321)
T PF03178_consen 83 HSTEVKGPVT----AI-----CSF-NGRLVVAVGNKLYVYDLDNSKTLLKKAFYDSPFY-ITSL--SVFKNYILVGDAMK 149 (321)
T ss_dssp EEEEESS-EE----EE-----EEE-TTEEEEEETTEEEEEEEETTSSEEEEEEE-BSSS-EEEE--EEETTEEEEEESSS
T ss_pred EEEeecCcce----Eh-----hhh-CCEEEEeecCEEEEEEccCcccchhhheecceEE-EEEE--eccccEEEEEEccc
Confidence 4444444332 11 112 466777778888888877776 221111111111 1122 23466666654443
Q ss_pred CceeEEEEEEcCCCceeeeeeeeccCCcccceEEecCcEEEEEECCCCeEEEEEee
Q 003792 199 SSQFHAYQINAMNGELLNHETAAFSGGFVGDVALVSSDTLVTLDTTRSILVTVSFK 254 (795)
Q Consensus 199 ~~~~~v~ald~~tG~~~w~~~v~~~~~~~~~~~~vg~~~lv~~d~~~~~L~v~~l~ 254 (795)
+ +.++.++...-+...-.+-..+..+....+++.++.+++.|. .|+++++...
T Consensus 150 s--v~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~-~gnl~~l~~~ 202 (321)
T PF03178_consen 150 S--VSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDK-DGNLFVLRYN 202 (321)
T ss_dssp S--EEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEET-TSEEEEEEE-
T ss_pred C--EEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcC-CCeEEEEEEC
Confidence 3 556666763332332222112333333333334457888885 4888777664
No 200
>PRK13684 Ycf48-like protein; Provisional
Probab=43.10 E-value=4.9e+02 Score=28.67 Aligned_cols=166 Identities=13% Similarity=0.126 Sum_probs=75.9
Q ss_pred eeEEEeccCcee---eeeeeeeccCCCEEEEEeCCCEEEEEECcCCccceEEEcCCc--c--eeeeeeeeeCCEEEEEEc
Q 003792 31 MDWHQQYIGKVK---HAVFHTQKTGRKRVVVSTEENVIASLDLRHGEIFWRHVLGIN--D--VVDGIDIALGKYVITLSS 103 (795)
Q Consensus 31 ~dW~~~~vG~~~---~~~f~~~~~~~~~v~vat~~g~l~ALn~~tG~ivWR~~l~~~--~--~i~~l~~~~g~~~V~Vs~ 103 (795)
.-|++...+... .-.|. +++..|+....|.|.. ..||-.-|++..... . .+..+.. .++..++ .+
T Consensus 35 ~~W~~~~~~~~~~l~~v~F~----d~~~g~avG~~G~il~--T~DgG~tW~~~~~~~~~~~~~l~~v~~-~~~~~~~-~G 106 (334)
T PRK13684 35 SPWQVIDLPTEANLLDIAFT----DPNHGWLVGSNRTLLE--TNDGGETWEERSLDLPEENFRLISISF-KGDEGWI-VG 106 (334)
T ss_pred CCcEEEecCCCCceEEEEEe----CCCcEEEEECCCEEEE--EcCCCCCceECccCCcccccceeeeEE-cCCcEEE-eC
Confidence 459987654321 12343 2445555555665544 346888999864321 1 1112211 2333333 33
Q ss_pred cCCeEEEEeCCCCcEeEEEeccCccccCC-ceeccccccccCCCeEEEE-eCCEEEEEECCCCcEEEEEeccCcceeeee
Q 003792 104 DGSTLRAWNLPDGQMVWESFLRGSKHSKP-LLLVPTNLKVDKDSLILVS-SKGCLHAVSSIDGEILWTRDFAAESVEVQQ 181 (795)
Q Consensus 104 ~g~~v~A~d~~tG~llWe~~~~~~~~s~~-~~~~~~~~~~~~~~~V~V~-~~g~l~ald~~tG~~~W~~~~~~~~~~~~~ 181 (795)
..+. .|-..||-.-|+........... ..+. ... .+.+++. ..|.+++- .||-.-|+............
T Consensus 107 ~~g~--i~~S~DgG~tW~~~~~~~~~~~~~~~i~----~~~-~~~~~~~g~~G~i~~S--~DgG~tW~~~~~~~~g~~~~ 177 (334)
T PRK13684 107 QPSL--LLHTTDGGKNWTRIPLSEKLPGSPYLIT----ALG-PGTAEMATNVGAIYRT--TDGGKNWEALVEDAAGVVRN 177 (334)
T ss_pred CCce--EEEECCCCCCCeEccCCcCCCCCceEEE----EEC-CCcceeeeccceEEEE--CCCCCCceeCcCCCcceEEE
Confidence 3333 44468888999876422111001 1111 111 2333333 35555443 56777888644322111222
Q ss_pred EEEEecCCEEEEEEecCCceeEEEEEEcCCCceeeeee
Q 003792 182 VIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHET 219 (795)
Q Consensus 182 vv~s~~~~~Vyvv~~~g~~~~~v~ald~~tG~~~w~~~ 219 (795)
+. ...++.+++++..| .++.. ...|...|+..
T Consensus 178 i~-~~~~g~~v~~g~~G----~i~~s-~~~gg~tW~~~ 209 (334)
T PRK13684 178 LR-RSPDGKYVAVSSRG----NFYST-WEPGQTAWTPH 209 (334)
T ss_pred EE-ECCCCeEEEEeCCc----eEEEE-cCCCCCeEEEe
Confidence 22 12345555555555 34432 23566667663
No 201
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=42.72 E-value=1e+02 Score=37.21 Aligned_cols=73 Identities=12% Similarity=0.229 Sum_probs=48.9
Q ss_pred CCEEEEEeCCCEEEEEECcCCccceEEEcCCcceeeeeeeeeCCEEEEEEccCCeEEEEeCCCCcEeEEEeccC
Q 003792 53 RKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRG 126 (795)
Q Consensus 53 ~~~v~vat~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~~~~ 126 (795)
...+.++|.+-.+---|..+|..+=++ .+..+++..+.....+..+.-++.++.|.-||..+|+++=+.....
T Consensus 547 s~Y~aTGSsD~tVRlWDv~~G~~VRiF-~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht 619 (707)
T KOG0263|consen 547 SNYVATGSSDRTVRLWDVSTGNSVRIF-TGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHT 619 (707)
T ss_pred ccccccCCCCceEEEEEcCCCcEEEEe-cCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhccc
Confidence 445666777889999999999986555 2233445555333333333324457899999999999987766553
No 202
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=42.57 E-value=2.4e+02 Score=29.95 Aligned_cols=70 Identities=11% Similarity=0.251 Sum_probs=45.3
Q ss_pred eEEEEecCCEEEEEEecCCceeEEEEEEcCCCceeeeeeeeccCCcccceEEecCcEEEEEECCCCeEEEEEeec
Q 003792 181 QVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAFSGGFVGDVALVSSDTLVTLDTTRSILVTVSFKN 255 (795)
Q Consensus 181 ~vv~s~~~~~Vyvv~~~g~~~~~v~ald~~tG~~~w~~~v~~~~~~~~~~~~vg~~~lv~~d~~~~~L~v~~l~s 255 (795)
.+.+....+.+|++.-..+ .++.||. +|+++.+..+....+..+ +.+++++.++..+-..+.|+...+..
T Consensus 26 GLTy~pd~~tLfaV~d~~~---~i~els~-~G~vlr~i~l~g~~D~Eg-I~y~g~~~~vl~~Er~~~L~~~~~~~ 95 (248)
T PF06977_consen 26 GLTYNPDTGTLFAVQDEPG---EIYELSL-DGKVLRRIPLDGFGDYEG-ITYLGNGRYVLSEERDQRLYIFTIDD 95 (248)
T ss_dssp EEEEETTTTEEEEEETTTT---EEEEEET-T--EEEEEE-SS-SSEEE-EEE-STTEEEEEETTTTEEEEEEE--
T ss_pred ccEEcCCCCeEEEEECCCC---EEEEEcC-CCCEEEEEeCCCCCCcee-EEEECCCEEEEEEcCCCcEEEEEEec
Confidence 3433345688898876654 7899996 699998886655444444 55678888888886678898888843
No 203
>cd00028 B_lectin Bulb-type mannose-specific lectin. The domain contains a three-fold internal repeat (beta-prism architecture). The consensus sequence motif QXDXNXVXY is involved in alpha-D-mannose recognition. Lectins are carbohydrate-binding proteins which specifically recognize diverse carbohydrates and mediate a wide variety of biological processes, such as cell-cell and host-pathogen interactions, serum glycoprotein turnover, and innate immune responses.
Probab=41.46 E-value=2.1e+02 Score=26.12 Aligned_cols=22 Identities=23% Similarity=0.557 Sum_probs=16.0
Q ss_pred EeCCEEEEEECCCCcEEEEEecc
Q 003792 151 SSKGCLHAVSSIDGEILWTRDFA 173 (795)
Q Consensus 151 ~~~g~l~ald~~tG~~~W~~~~~ 173 (795)
..+|.|+.+|. +|.++|.....
T Consensus 62 ~~dGnLvl~~~-~g~~vW~S~~~ 83 (116)
T cd00028 62 QSDGNLVIYDG-SGTVVWSSNTT 83 (116)
T ss_pred ecCCCeEEEcC-CCcEEEEeccc
Confidence 35788877774 67899986544
No 204
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=39.75 E-value=67 Score=35.35 Aligned_cols=72 Identities=13% Similarity=0.111 Sum_probs=44.7
Q ss_pred CCCEEEEEeCCCEEEEEECcCCccceEEEcCCcceeeeeeeeeCCEEEEEEccCCeEEEEeCCCCcEeEEEeccC
Q 003792 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRG 126 (795)
Q Consensus 52 ~~~~v~vat~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~~~~ 126 (795)
+++.|+.||.+-.+-.-|..||+-+=...--.. .|..+ ...+..|+-|+.+.++|.||++.|+.+--.+...
T Consensus 329 d~kyIVsASgDRTikvW~~st~efvRtl~gHkR-GIACl--QYr~rlvVSGSSDntIRlwdi~~G~cLRvLeGHE 400 (499)
T KOG0281|consen 329 DDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKR-GIACL--QYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHE 400 (499)
T ss_pred ccceEEEecCCceEEEEeccceeeehhhhcccc-cceeh--hccCeEEEecCCCceEEEEeccccHHHHHHhchH
Confidence 366677888888888888888865433221111 13333 2334444434457899999999999875444443
No 205
>PRK02889 tolB translocation protein TolB; Provisional
Probab=39.23 E-value=6.3e+02 Score=28.76 Aligned_cols=150 Identities=12% Similarity=0.072 Sum_probs=69.3
Q ss_pred cCCCEEEEEeC---CCEEEEEECcCCccceEEEcCCcceeeeeee-eeCCEEEEEEccC--CeEEEEeCCCCcEeEEEec
Q 003792 51 TGRKRVVVSTE---ENVIASLDLRHGEIFWRHVLGINDVVDGIDI-ALGKYVITLSSDG--STLRAWNLPDGQMVWESFL 124 (795)
Q Consensus 51 ~~~~~v~vat~---~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~-~~g~~~V~Vs~~g--~~v~A~d~~tG~llWe~~~ 124 (795)
+++++|++.+. ...|+..|..+|+.. +....++....... ..|+.+++..+.+ ..++.+|..+|.+. +..-
T Consensus 205 PDG~~la~~s~~~~~~~I~~~dl~~g~~~--~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~ 281 (427)
T PRK02889 205 PDGTKLAYVSFESKKPVVYVHDLATGRRR--VVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGLR-RLTQ 281 (427)
T ss_pred CCCCEEEEEEccCCCcEEEEEECCCCCEE--EeecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCCcE-ECCC
Confidence 34556666553 246999999999753 11111111111111 2344455544332 35777787766532 2111
Q ss_pred cCccccCCceeccccccccCCCeEEEEe----CCEEEEEECCCCcEE-EEEeccCcceeeeeEEEEecCCEEEEEEecCC
Q 003792 125 RGSKHSKPLLLVPTNLKVDKDSLILVSS----KGCLHAVSSIDGEIL-WTRDFAAESVEVQQVIQLDESDQIYVVGYAGS 199 (795)
Q Consensus 125 ~~~~~s~~~~~~~~~~~~~~~~~V~V~~----~g~l~ald~~tG~~~-W~~~~~~~~~~~~~vv~s~~~~~Vyvv~~~g~ 199 (795)
..... ..+... .+ ++.++..+ .-.++.++..+|+.. -++. .... .....+.++..+++.+..++
T Consensus 282 ~~~~~-~~~~wS-----pD-G~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~--g~~~--~~~~~SpDG~~Ia~~s~~~g 350 (427)
T PRK02889 282 SSGID-TEPFFS-----PD-GRSIYFTSDRGGAPQIYRMPASGGAAQRVTFT--GSYN--TSPRISPDGKLLAYISRVGG 350 (427)
T ss_pred CCCCC-cCeEEc-----CC-CCEEEEEecCCCCcEEEEEECCCCceEEEecC--CCCc--CceEECCCCCEEEEEEccCC
Confidence 11111 111222 22 22333322 236777777766532 1111 1111 01111345556655554432
Q ss_pred ceeEEEEEEcCCCcee
Q 003792 200 SQFHAYQINAMNGELL 215 (795)
Q Consensus 200 ~~~~v~ald~~tG~~~ 215 (795)
...++.+|..+|+..
T Consensus 351 -~~~I~v~d~~~g~~~ 365 (427)
T PRK02889 351 -AFKLYVQDLATGQVT 365 (427)
T ss_pred -cEEEEEEECCCCCeE
Confidence 246888899898764
No 206
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=38.88 E-value=6.9e+02 Score=29.76 Aligned_cols=155 Identities=14% Similarity=0.203 Sum_probs=85.9
Q ss_pred eCCEEEEEEccCCeEEEEeCCCCcEeEEEeccCccccCCceecc---------------------------------ccc
Q 003792 94 LGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVP---------------------------------TNL 140 (795)
Q Consensus 94 ~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~~~~~~~s~~~~~~~---------------------------------~~~ 140 (795)
.|+.++..|.....|+.+|.+.=.+..|..+..+.+ ...++. -+.
T Consensus 62 DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V--~feiLsDD~SK~v~L~~DR~IefHak~G~hy~~RIP~~GRDm 139 (703)
T KOG2321|consen 62 DGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVV--DFEILSDDYSKSVFLQNDRTIEFHAKYGRHYRTRIPKFGRDM 139 (703)
T ss_pred CCcEEEEecccCCceEEEEcccceeeeeecccccce--eEEEeccchhhheEeecCceeeehhhcCeeeeeecCcCCccc
Confidence 455666656667789999999999999988876653 000100 000
Q ss_pred cccC-CCeEEEE-eCCEEEEEECCCCcEEEEEeccCcceeeeeEEEEecCCEEEEEEe-cCCceeEEEEEEcCCCceeee
Q 003792 141 KVDK-DSLILVS-SKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGY-AGSSQFHAYQINAMNGELLNH 217 (795)
Q Consensus 141 ~~~~-~~~V~V~-~~g~l~ald~~tG~~~W~~~~~~~~~~~~~vv~s~~~~~Vyvv~~-~g~~~~~v~ald~~tG~~~w~ 217 (795)
.-+. ..++++. ++..||+||+.-|.-+=-+....+.+ .++....-..+++.|. +| .|-++|+.+-+....
T Consensus 140 ~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~l---N~v~in~~hgLla~Gt~~g----~VEfwDpR~ksrv~~ 212 (703)
T KOG2321|consen 140 KYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGEL---NVVSINEEHGLLACGTEDG----VVEFWDPRDKSRVGT 212 (703)
T ss_pred cccCCCccEEEeecCcceEEEEccccccccccccccccc---eeeeecCccceEEecccCc----eEEEecchhhhhhee
Confidence 0000 1234444 57789999988887665555544433 2222222333444343 33 789999988777765
Q ss_pred eeeecc----CCccc-----ceEEecCcEEEEEECCCCeEEEEEeecCe
Q 003792 218 ETAAFS----GGFVG-----DVALVSSDTLVTLDTTRSILVTVSFKNRK 257 (795)
Q Consensus 218 ~~v~~~----~~~~~-----~~~~vg~~~lv~~d~~~~~L~v~~l~sg~ 257 (795)
...+.. .+... +.-|-+++.-+.+-..+|+.++.||.+.+
T Consensus 213 l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~ 261 (703)
T KOG2321|consen 213 LDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASK 261 (703)
T ss_pred eecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCC
Confidence 543322 11111 12222334434444457888888888755
No 207
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=38.75 E-value=4.7e+02 Score=29.07 Aligned_cols=173 Identities=13% Similarity=0.127 Sum_probs=86.7
Q ss_pred ECcCCccceEEEcCCcceeeeeeeeeC-CEEEEEEccCCeEEEEeCCCCcEeEEEeccCccccCCceeccccccccCCCe
Q 003792 69 DLRHGEIFWRHVLGINDVVDGIDIALG-KYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSL 147 (795)
Q Consensus 69 n~~tG~ivWR~~l~~~~~i~~l~~~~g-~~~V~Vs~~g~~v~A~d~~tG~llWe~~~~~~~~s~~~~~~~~~~~~~~~~~ 147 (795)
.++++..-|-...+....+ ..+ +..+.|+-..+.+|.+|..||+.+=++....+.. ....+.. -+..+.
T Consensus 17 S~~~~~~~~~Lk~~~q~~~-----~~~~e~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~-N~vrf~~----~ds~h~ 86 (376)
T KOG1188|consen 17 SVRVSNEDFCLKYDIQEQV-----KDGFETAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATT-NGVRFIS----CDSPHG 86 (376)
T ss_pred ccccccccceeeccchhhh-----ccCcceeEEEEecCCeEEEEeccchhhhheecCCCCcc-cceEEec----CCCCCe
Confidence 3455666666665432211 111 2355555445689999999999998888776554 2333332 112345
Q ss_pred EEEE-eCCEEEEEECCCCc----EEEEEeccCcceeeeeEEEEecCCEEEEEEec-CCceeEEEEEEcCCCce-eeeeee
Q 003792 148 ILVS-SKGCLHAVSSIDGE----ILWTRDFAAESVEVQQVIQLDESDQIYVVGYA-GSSQFHAYQINAMNGEL-LNHETA 220 (795)
Q Consensus 148 V~V~-~~g~l~ald~~tG~----~~W~~~~~~~~~~~~~vv~s~~~~~Vyvv~~~-g~~~~~v~ald~~tG~~-~w~~~v 220 (795)
|+.. ++|.+...|..+-. ..|+...+. +..+.+.--.+.++..+.- -.+...|+-+|...-+. +.++.-
T Consensus 87 v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~----~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~e 162 (376)
T KOG1188|consen 87 VISCSSDGTVRLWDIRSQAESARISWTQQSGT----PFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNE 162 (376)
T ss_pred eEEeccCCeEEEEEeecchhhhheeccCCCCC----cceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhh
Confidence 5555 59999999887654 345544322 2334332223445444321 12334566667655443 222211
Q ss_pred eccCCcccceEEecCcEEEEEECCCCeEEEEEeec
Q 003792 221 AFSGGFVGDVALVSSDTLVTLDTTRSILVTVSFKN 255 (795)
Q Consensus 221 ~~~~~~~~~~~~vg~~~lv~~d~~~~~L~v~~l~s 255 (795)
+-.-+++.-++...++-++..-+-.|-..+.|++.
T Consensus 163 SH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~ 197 (376)
T KOG1188|consen 163 SHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKK 197 (376)
T ss_pred hccCcceeEEecCCCCCeEEeecccceEEeeecCC
Confidence 11123333333333332223322345555555543
No 208
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=38.54 E-value=4.8e+02 Score=28.59 Aligned_cols=75 Identities=21% Similarity=0.171 Sum_probs=46.1
Q ss_pred cCCCEEEEEeC-CCEEEEEECc--CCccceE----EEcCCcceeeeeeeeeCCEEEEEEc-c-CCeEEEEeCCCCcEeEE
Q 003792 51 TGRKRVVVSTE-ENVIASLDLR--HGEIFWR----HVLGINDVVDGIDIALGKYVITLSS-D-GSTLRAWNLPDGQMVWE 121 (795)
Q Consensus 51 ~~~~~v~vat~-~g~l~ALn~~--tG~ivWR----~~l~~~~~i~~l~~~~g~~~V~Vs~-~-g~~v~A~d~~tG~llWe 121 (795)
++.+.+|++.. .+.|.+++.. +|.+-=| ..-..++..+++. ..+++.+.++. . |+.|..|++. |+++=+
T Consensus 172 pDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~-vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~ 249 (307)
T COG3386 172 PDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMA-VDADGNLWVAAVWGGGRVVRFNPD-GKLLGE 249 (307)
T ss_pred CCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceE-EeCCCCEEEecccCCceEEEECCC-CcEEEE
Confidence 44557777765 4788777553 3443332 2212233445663 45666666443 2 3489999998 999999
Q ss_pred EeccCc
Q 003792 122 SFLRGS 127 (795)
Q Consensus 122 ~~~~~~ 127 (795)
..+...
T Consensus 250 i~lP~~ 255 (307)
T COG3386 250 IKLPVK 255 (307)
T ss_pred EECCCC
Confidence 988743
No 209
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=38.51 E-value=6.7e+02 Score=28.90 Aligned_cols=135 Identities=12% Similarity=0.088 Sum_probs=68.5
Q ss_pred EEEEEeCCCEEEEEECcCCccceEEEcCCcceeeeeeeeeCCEEEEE-EccCCeEEEEeCCCCc-------EeEEEeccC
Q 003792 55 RVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITL-SSDGSTLRAWNLPDGQ-------MVWESFLRG 126 (795)
Q Consensus 55 ~v~vat~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~V-s~~g~~v~A~d~~tG~-------llWe~~~~~ 126 (795)
-++.+|..|.||.--..||.++=-. ..-.-++..+. ..+++..++ ++.++.|++|...+=. ..=......
T Consensus 95 ~l~ag~i~g~lYlWelssG~LL~v~-~aHYQ~ITcL~-fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~ 172 (476)
T KOG0646|consen 95 FLLAGTISGNLYLWELSSGILLNVL-SAHYQSITCLK-FSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSD 172 (476)
T ss_pred EEEeecccCcEEEEEeccccHHHHH-HhhccceeEEE-EeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeecc
Confidence 3566669999999999999876432 11112344552 345555555 4557889999764211 110000000
Q ss_pred ccccCCceecccccccc-CCCeEEEEe-CCEEEEEECCCCcEEEEEeccCcceeeeeEEEEecCCEEEEEEecC
Q 003792 127 SKHSKPLLLVPTNLKVD-KDSLILVSS-KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAG 198 (795)
Q Consensus 127 ~~~s~~~~~~~~~~~~~-~~~~V~V~~-~g~l~ald~~tG~~~W~~~~~~~~~~~~~vv~s~~~~~Vyvv~~~g 198 (795)
-.+++........ .+..++-.+ |..+...|...|.++=+...|..-. .+..-.++..+|+.+-.|
T Consensus 173 ----HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~---av~lDpae~~~yiGt~~G 239 (476)
T KOG0646|consen 173 ----HTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIK---AVALDPAERVVYIGTEEG 239 (476)
T ss_pred ----CcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcce---eEEEcccccEEEecCCcc
Confidence 0111111000001 012333333 7778888888888888777765422 222123455566544444
No 210
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=37.63 E-value=6.3e+02 Score=28.32 Aligned_cols=146 Identities=20% Similarity=0.199 Sum_probs=75.9
Q ss_pred CEEEEEECcCC---ccceEEEcCCcceeeeeeeeeCCEEEEEEcc---CCeEEEEeCCCCcE-eEEEeccCccccCCcee
Q 003792 63 NVIASLDLRHG---EIFWRHVLGINDVVDGIDIALGKYVITLSSD---GSTLRAWNLPDGQM-VWESFLRGSKHSKPLLL 135 (795)
Q Consensus 63 g~l~ALn~~tG---~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~~---g~~v~A~d~~tG~l-lWe~~~~~~~~s~~~~~ 135 (795)
+.++.+|..++ ...|+...+.........-..++..++++.. .++|.+.+..+... .|+..+..+.- ...+
T Consensus 252 s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~--~~~l 329 (414)
T PF02897_consen 252 SEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDE--DVSL 329 (414)
T ss_dssp EEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SS--SEEE
T ss_pred CeEEEEeccccCCCcCCcEEEeCCCCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCC--ceeE
Confidence 57999999886 7889988765432322211346666666643 36899999998875 56654433221 1112
Q ss_pred ccccccccCCCeEEEE--eC--CEEEEEECCCCcEEEEEeccCcceeeeeEEEEecCCEEEEEEecC-CceeEEEEEEcC
Q 003792 136 VPTNLKVDKDSLILVS--SK--GCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAG-SSQFHAYQINAM 210 (795)
Q Consensus 136 ~~~~~~~~~~~~V~V~--~~--g~l~ald~~tG~~~W~~~~~~~~~~~~~vv~s~~~~~Vyvv~~~g-~~~~~v~ald~~ 210 (795)
... ... .+.+++. .+ .+|..++...|...-....+.... ...+......+.+++ .+.+ -.--.++.+|+.
T Consensus 330 ~~~--~~~-~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~~g~-v~~~~~~~~~~~~~~-~~ss~~~P~~~y~~d~~ 404 (414)
T PF02897_consen 330 EDV--SLF-KDYLVLSYRENGSSRLRVYDLDDGKESREIPLPEAGS-VSGVSGDFDSDELRF-SYSSFTTPPTVYRYDLA 404 (414)
T ss_dssp EEE--EEE-TTEEEEEEEETTEEEEEEEETT-TEEEEEEESSSSSE-EEEEES-TT-SEEEE-EEEETTEEEEEEEEETT
T ss_pred EEE--EEE-CCEEEEEEEECCccEEEEEECCCCcEEeeecCCcceE-EeccCCCCCCCEEEE-EEeCCCCCCEEEEEECC
Confidence 110 122 3334442 33 468888877566666666664332 111110122444443 3332 112378888999
Q ss_pred CCcee
Q 003792 211 NGELL 215 (795)
Q Consensus 211 tG~~~ 215 (795)
+|+..
T Consensus 405 t~~~~ 409 (414)
T PF02897_consen 405 TGELT 409 (414)
T ss_dssp TTCEE
T ss_pred CCCEE
Confidence 88864
No 211
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=37.18 E-value=90 Score=33.82 Aligned_cols=63 Identities=17% Similarity=0.344 Sum_probs=45.1
Q ss_pred CCCEEEEEeCCCEEEEEECcCCccceEEEcCCcceeeeeeee-eCCEEEEEEccCCeEEEEeCCC
Q 003792 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIA-LGKYVITLSSDGSTLRAWNLPD 115 (795)
Q Consensus 52 ~~~~v~vat~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~-~g~~~V~Vs~~g~~v~A~d~~t 115 (795)
+...||-++.+-.|+..|++||+..-|+.....- +..+.+. .|-.+|.-++++++++.||...
T Consensus 101 d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~-vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~ 164 (338)
T KOG0265|consen 101 DGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSF-VNSLDPSRRGPQLVCSGSDDGTLKLWDIRK 164 (338)
T ss_pred CCCEEEEecCCceEEEEecccceeeehhccccce-eeecCccccCCeEEEecCCCceEEEEeecc
Confidence 4666999999999999999999999999887662 2223222 2333444345678999999864
No 212
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=36.98 E-value=3.7e+02 Score=33.07 Aligned_cols=76 Identities=16% Similarity=0.180 Sum_probs=49.7
Q ss_pred EEEEEccCCeEEEEeCCCCcEeEEEeccCccccCCceeccccccccCCCeEEE-E-eCCEEEEEECCCCcEEEEEeccCc
Q 003792 98 VITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILV-S-SKGCLHAVSSIDGEILWTRDFAAE 175 (795)
Q Consensus 98 ~V~Vs~~g~~v~A~d~~tG~llWe~~~~~~~~s~~~~~~~~~~~~~~~~~V~V-~-~~g~l~ald~~tG~~~W~~~~~~~ 175 (795)
.+.++...|++..||-..|..+=+..-..... +++..++ ..+..++++. . +...+...|..+|+..|++.....
T Consensus 81 liAsaD~~GrIil~d~~~~s~~~~l~~~~~~~-qdl~W~~---~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~ 156 (1062)
T KOG1912|consen 81 LIASADISGRIILVDFVLASVINWLSHSNDSV-QDLCWVP---ARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHE 156 (1062)
T ss_pred eEEeccccCcEEEEEehhhhhhhhhcCCCcch-hheeeee---ccCcchheeEEecCCcEEEEEEccCCceeeccccCCc
Confidence 34434446799999999987544443333333 5777776 3343434444 4 577899999999999999987654
Q ss_pred ce
Q 003792 176 SV 177 (795)
Q Consensus 176 ~~ 177 (795)
.+
T Consensus 157 iL 158 (1062)
T KOG1912|consen 157 IL 158 (1062)
T ss_pred ce
Confidence 43
No 213
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=36.88 E-value=3.6e+02 Score=32.31 Aligned_cols=60 Identities=8% Similarity=0.034 Sum_probs=40.0
Q ss_pred eCCEEEEEEccCCeEEEEeCCCCcEeEEEeccCccccCCceeccccccccCCCeEEEEe--CCEEEEEECC
Q 003792 94 LGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSS--KGCLHAVSSI 162 (795)
Q Consensus 94 ~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~~~~~~~s~~~~~~~~~~~~~~~~~V~V~~--~g~l~ald~~ 162 (795)
..+++++.++ ++.++.||+.+++.+-+....+... +++.. ..++.++..+ +..+.-+|+.
T Consensus 139 TaDgil~s~a-~g~v~i~D~stqk~~~el~~h~d~v-QSa~W-------seDG~llatscKdkqirifDPR 200 (1012)
T KOG1445|consen 139 TADGILASGA-HGSVYITDISTQKTAVELSGHTDKV-QSADW-------SEDGKLLATSCKDKQIRIFDPR 200 (1012)
T ss_pred CcCceEEecc-CceEEEEEcccCceeecccCCchhh-hcccc-------ccCCceEeeecCCcceEEeCCc
Confidence 3566777444 5699999999999999988776654 22222 2255555542 6667777764
No 214
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.83 E-value=4.8e+02 Score=29.54 Aligned_cols=20 Identities=15% Similarity=0.192 Sum_probs=10.7
Q ss_pred cEEEEEECCCCeEEEEEeec
Q 003792 236 DTLVTLDTTRSILVTVSFKN 255 (795)
Q Consensus 236 ~~lv~~d~~~~~L~v~~l~s 255 (795)
+.++++-...|++.+.+..+
T Consensus 293 Gkf~AlGT~dGsVai~~~~~ 312 (398)
T KOG0771|consen 293 GKFLALGTMDGSVAIYDAKS 312 (398)
T ss_pred CcEEEEeccCCcEEEEEece
Confidence 44445544556666665543
No 215
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=34.75 E-value=5.1e+02 Score=26.41 Aligned_cols=65 Identities=20% Similarity=0.295 Sum_probs=39.6
Q ss_pred ceEEEEECCCCcEEEEEecccCCCCCCCceee-EEeeecCcccCCCCCCeEEEEEEeCCCCCCCcEEEEEEccCCcee
Q 003792 497 RKIFALHSGDGRVVWSLLLHKSEACDSPTELN-LYQWQTPHHHAMDENPSVLVVGRCGVSSKAPAILSFVDTYTGKEL 573 (795)
Q Consensus 497 Gkl~alds~~G~i~W~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~~~~n~~tG~~~ 573 (795)
|+||--|..+|.. |++.+.+.... .++ .+-|- |+...++|++..--.-..-|.+|.+|..||+..
T Consensus 88 GkIYIkn~~~~~~-~~L~i~~~~~k----~sPK~i~Wi-------DD~~L~vIIG~a~GTvS~GGnLy~~nl~tg~~~ 153 (200)
T PF15525_consen 88 GKIYIKNLNNNNW-WSLQIDQNEEK----YSPKYIEWI-------DDNNLAVIIGYAHGTVSKGGNLYKYNLNTGNLT 153 (200)
T ss_pred eeEEEEecCCCce-EEEEecCcccc----cCCceeEEe-------cCCcEEEEEccccceEccCCeEEEEEccCCcee
Confidence 7888888887776 88877653211 122 44552 234455555531100245588999999999865
No 216
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=32.45 E-value=2.1e+02 Score=31.75 Aligned_cols=91 Identities=13% Similarity=0.109 Sum_probs=51.6
Q ss_pred cCCeEEEEeCCCCcEeEEEeccCccccCCceeccccccccCCCeEEEE--eCCEEEEEECCCCcEEEEEeccCcceeeee
Q 003792 104 DGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVS--SKGCLHAVSSIDGEILWTRDFAAESVEVQQ 181 (795)
Q Consensus 104 ~g~~v~A~d~~tG~llWe~~~~~~~~s~~~~~~~~~~~~~~~~~V~V~--~~g~l~ald~~tG~~~W~~~~~~~~~~~~~ 181 (795)
++++++.|+..||.-+-......- ++.. .+. .+.++|. +|.++...|...|+-+=..+-.+ . ..+
T Consensus 338 gDRTikvW~~st~efvRtl~gHkR----GIAC-----lQY-r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHE-e--LvR 404 (499)
T KOG0281|consen 338 GDRTIKVWSTSTCEFVRTLNGHKR----GIAC-----LQY-RDRLVVSGSSDNTIRLWDIECGACLRVLEGHE-E--LVR 404 (499)
T ss_pred CCceEEEEeccceeeehhhhcccc----ccee-----hhc-cCeEEEecCCCceEEEEeccccHHHHHHhchH-H--hhh
Confidence 468999999999988765554432 2222 234 3445553 48889888988887543322111 1 123
Q ss_pred EEEEecCCEEEEEEecCCceeEEEEEEcCCC
Q 003792 182 VIQLDESDQIYVVGYAGSSQFHAYQINAMNG 212 (795)
Q Consensus 182 vv~s~~~~~Vyvv~~~g~~~~~v~ald~~tG 212 (795)
++. -++..+.-.+++| ++-..|..+|
T Consensus 405 ciR-Fd~krIVSGaYDG----kikvWdl~aa 430 (499)
T KOG0281|consen 405 CIR-FDNKRIVSGAYDG----KIKVWDLQAA 430 (499)
T ss_pred hee-ecCceeeeccccc----eEEEEecccc
Confidence 332 2444555444555 5666665554
No 217
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=32.41 E-value=7.2e+02 Score=27.44 Aligned_cols=156 Identities=12% Similarity=0.063 Sum_probs=80.8
Q ss_pred CCEEEEEeCCCEEEEEECcCCccceEEEcCCc-ceeeeeeee-eCCEEEEEEccCCeEEEEeCCCCcEeEEEeccCcccc
Q 003792 53 RKRVVVSTEENVIASLDLRHGEIFWRHVLGIN-DVVDGIDIA-LGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHS 130 (795)
Q Consensus 53 ~~~v~vat~~g~l~ALn~~tG~ivWR~~l~~~-~~i~~l~~~-~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~~~~~~~s 130 (795)
+..+-++-.+|.|.-.|..|=.+.= .+... -++..+.-. .|..+++ ++.+..+..||...|.++-+.++.++..
T Consensus 35 G~~lAvGc~nG~vvI~D~~T~~iar--~lsaH~~pi~sl~WS~dgr~Llt-sS~D~si~lwDl~~gs~l~rirf~spv~- 110 (405)
T KOG1273|consen 35 GDYLAVGCANGRVVIYDFDTFRIAR--MLSAHVRPITSLCWSRDGRKLLT-SSRDWSIKLWDLLKGSPLKRIRFDSPVW- 110 (405)
T ss_pred cceeeeeccCCcEEEEEccccchhh--hhhccccceeEEEecCCCCEeee-ecCCceeEEEeccCCCceeEEEccCccc-
Confidence 5567777778877777766533210 01111 012222111 2333444 5556799999999999999999998875
Q ss_pred CCceeccccccccCCCeEEEE-eCCEEEEEECCCCcEEEEEeccCcce--eeeeEEEEecCCEEEEEEecCCceeEEEEE
Q 003792 131 KPLLLVPTNLKVDKDSLILVS-SKGCLHAVSSIDGEILWTRDFAAESV--EVQQVIQLDESDQIYVVGYAGSSQFHAYQI 207 (795)
Q Consensus 131 ~~~~~~~~~~~~~~~~~V~V~-~~g~l~ald~~tG~~~W~~~~~~~~~--~~~~vv~s~~~~~Vyvv~~~g~~~~~v~al 207 (795)
.....| ...+..++. -+..-+.++..+++..---..+.+.+ .+...+.-..+..+|+ |. ++.++..+
T Consensus 111 -~~q~hp-----~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIit-Gt---sKGkllv~ 180 (405)
T KOG1273|consen 111 -GAQWHP-----RKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIIT-GT---SKGKLLVY 180 (405)
T ss_pred -eeeecc-----ccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEE-ec---CcceEEEE
Confidence 223333 223444443 22223344444443332222222222 1111111123455554 32 23389999
Q ss_pred EcCCCceeeeeeeec
Q 003792 208 NAMNGELLNHETAAF 222 (795)
Q Consensus 208 d~~tG~~~w~~~v~~ 222 (795)
|+.|=+.+...++..
T Consensus 181 ~a~t~e~vas~rits 195 (405)
T KOG1273|consen 181 DAETLECVASFRITS 195 (405)
T ss_pred ecchheeeeeeeech
Confidence 999988876665544
No 218
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=31.96 E-value=7.6e+02 Score=30.86 Aligned_cols=112 Identities=15% Similarity=0.138 Sum_probs=63.2
Q ss_pred CCEEEEEEc-cCCeEEEEeCCCCcEeEEEeccCccccCCceecccc-ccccCCCeEEE-EeCCEEEEEECCC-C-cEEEE
Q 003792 95 GKYVITLSS-DGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTN-LKVDKDSLILV-SSKGCLHAVSSID-G-EILWT 169 (795)
Q Consensus 95 g~~~V~Vs~-~g~~v~A~d~~tG~llWe~~~~~~~~s~~~~~~~~~-~~~~~~~~V~V-~~~g~l~ald~~t-G-~~~W~ 169 (795)
...++.... +...|+-.|.+.|+++=||.+....- -..+.+.+ .++-.....|+ +++..|+++|+.- | +++|.
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~--v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~ 569 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIP--VVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDS 569 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcc--eeEecccccccccCCCceEEEECCCceEEeccCCCCCceeec
Confidence 344666553 45789999999999987777654220 01122210 00001234555 4899999999865 3 46775
Q ss_pred EeccCcceeeeeEEEEecCCEEEEEEecCCceeEEEEEEcCCCc
Q 003792 170 RDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGE 213 (795)
Q Consensus 170 ~~~~~~~~~~~~vv~s~~~~~Vyvv~~~g~~~~~v~ald~~tG~ 213 (795)
.......-...++...+..|.+.|.+..| .+.-+| ..|.
T Consensus 570 ~~k~Y~~~~~Fs~~aTt~~G~iavgs~~G----~IRLyd-~~g~ 608 (794)
T PF08553_consen 570 QSKQYSSKNNFSCFATTEDGYIAVGSNKG----DIRLYD-RLGK 608 (794)
T ss_pred cccccccCCCceEEEecCCceEEEEeCCC----cEEeec-ccch
Confidence 43332222244565455677777766666 344445 4563
No 219
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=31.77 E-value=8.4e+02 Score=28.03 Aligned_cols=199 Identities=11% Similarity=0.107 Sum_probs=104.0
Q ss_pred CCEEEEEeCCCEEEEEECcCCccceEEEcCCcceeeeeeeeeCCEEEEEEccCCeEEEEeCCCCcEeEEEeccCccccCC
Q 003792 53 RKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKP 132 (795)
Q Consensus 53 ~~~v~vat~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~~~~~~~s~~ 132 (795)
.+.+.++..+-.+..+|-.+++++=...=... .+..+-.....+.+...+.+..+|.|...+-..-=......
T Consensus 231 ~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~k-ki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~------ 303 (506)
T KOG0289|consen 231 SSKILTGGEDKTAVLFDKPSNQILATLKGHTK-KITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHE------ 303 (506)
T ss_pred CCcceecCCCCceEEEecchhhhhhhccCcce-EEEEEEeccchhheeecCCcceEEeeccccccCcccccccc------
Confidence 45678888887788888888776533211111 12222112233444444445678887765544111111111
Q ss_pred ceeccccccccCCCeEEEE-e-CCEEEEEECCCCcEEEEEeccCcceeeeeEEEEecCCEEEEEEecCCceeEEEEEEcC
Q 003792 133 LLLVPTNLKVDKDSLILVS-S-KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAM 210 (795)
Q Consensus 133 ~~~~~~~~~~~~~~~V~V~-~-~g~l~ald~~tG~~~W~~~~~~~~~~~~~vv~s~~~~~Vyvv~~~g~~~~~v~ald~~ 210 (795)
.++... .....++.++. + ++...--|..+|..+=............... ..-+|.+|..+...+ .+-.+|.+
T Consensus 304 ~~V~~l--s~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~-fHpDgLifgtgt~d~---~vkiwdlk 377 (506)
T KOG0289|consen 304 EPVTGL--SLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAA-FHPDGLIFGTGTPDG---VVKIWDLK 377 (506)
T ss_pred ccceee--eeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEee-EcCCceEEeccCCCc---eEEEEEcC
Confidence 111111 11223444443 3 5665556778888776665542222111111 135677777665543 67777887
Q ss_pred CCceeeeeeeeccCCcccceEEecCcEEEEEECCCCeEEEEEeecCeeeeEEEeecc
Q 003792 211 NGELLNHETAAFSGGFVGDVALVSSDTLVTLDTTRSILVTVSFKNRKIAFQETHLSN 267 (795)
Q Consensus 211 tG~~~w~~~v~~~~~~~~~~~~vg~~~lv~~d~~~~~L~v~~l~sg~~~~~~~~l~~ 267 (795)
++..+..+... .+.+. .+-|-.++++.++..+.+++..-||..-+ .++.+++++
T Consensus 378 s~~~~a~Fpgh-t~~vk-~i~FsENGY~Lat~add~~V~lwDLRKl~-n~kt~~l~~ 431 (506)
T KOG0289|consen 378 SQTNVAKFPGH-TGPVK-AISFSENGYWLATAADDGSVKLWDLRKLK-NFKTIQLDE 431 (506)
T ss_pred CccccccCCCC-CCcee-EEEeccCceEEEEEecCCeEEEEEehhhc-ccceeeccc
Confidence 77654444210 01111 23444556777777777889999998755 478888764
No 220
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=31.02 E-value=8.6e+02 Score=28.37 Aligned_cols=155 Identities=12% Similarity=0.104 Sum_probs=85.0
Q ss_pred eCCEEEEEEccC-----Ce--EEEEeCCCCcEeEEEeccCccccCCceeccccccccCCCeEEEE-e-C------CEEEE
Q 003792 94 LGKYVITLSSDG-----ST--LRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVS-S-K------GCLHA 158 (795)
Q Consensus 94 ~g~~~V~Vs~~g-----~~--v~A~d~~tG~llWe~~~~~~~~s~~~~~~~~~~~~~~~~~V~V~-~-~------g~l~a 158 (795)
.++.+++.+|.+ .. |+.+|..+ .+|......+.. +.+..+...... ++.++++ . + ..|+.
T Consensus 69 ~~~~~~vfGG~~~~~~~~~~dl~~~d~~~--~~w~~~~~~g~~--p~~r~g~~~~~~-~~~l~lfGG~~~~~~~~~~l~~ 143 (482)
T KOG0379|consen 69 IGNKLYVFGGYGSGDRLTDLDLYVLDLES--QLWTKPAATGDE--PSPRYGHSLSAV-GDKLYLFGGTDKKYRNLNELHS 143 (482)
T ss_pred ECCEEEEECCCCCCCccccceeEEeecCC--cccccccccCCC--CCcccceeEEEE-CCeEEEEccccCCCCChhheEe
Confidence 466666666532 12 77777766 777776655443 222222111112 3445554 2 3 27899
Q ss_pred EECCCCcEEEEEeccCcceeeee--EEEEecCCEEEEEEecCC---ceeEEEEEEcCCCceeeeeeeec---cCCccc-c
Q 003792 159 VSSIDGEILWTRDFAAESVEVQQ--VIQLDESDQIYVVGYAGS---SQFHAYQINAMNGELLNHETAAF---SGGFVG-D 229 (795)
Q Consensus 159 ld~~tG~~~W~~~~~~~~~~~~~--vv~s~~~~~Vyvv~~~g~---~~~~v~ald~~tG~~~w~~~v~~---~~~~~~-~ 229 (795)
+|..|++ |+...+.+...+.+ -.....++.+|+.|-.+. ..-.++++|+.+=+ |+..... |+...+ .
T Consensus 144 ~d~~t~~--W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~--W~~~~~~g~~P~pR~gH~ 219 (482)
T KOG0379|consen 144 LDLSTRT--WSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETST--WSELDTQGEAPSPRYGHA 219 (482)
T ss_pred ccCCCCc--EEEecCcCCCCCCcccceEEEECCEEEEECCccCcccceeeeeeecccccc--ceecccCCCCCCCCCCce
Confidence 9988874 55544433210111 111245688888775542 34578999988766 8774322 332333 4
Q ss_pred eEEecCcEEEEEECC-----CCeEEEEEeecCe
Q 003792 230 VALVSSDTLVTLDTT-----RSILVTVSFKNRK 257 (795)
Q Consensus 230 ~~~vg~~~lv~~d~~-----~~~L~v~~l~sg~ 257 (795)
++++++..+++.... .+.++.+||.+..
T Consensus 220 ~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~ 252 (482)
T KOG0379|consen 220 MVVVGNKLLVFGGGDDGDVYLNDVHILDLSTWE 252 (482)
T ss_pred EEEECCeEEEEeccccCCceecceEeeecccce
Confidence 555576666655433 2458889988854
No 221
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=30.90 E-value=7e+02 Score=28.50 Aligned_cols=70 Identities=14% Similarity=0.007 Sum_probs=37.8
Q ss_pred CCEEEEEeCCCEEEEEECcCCccceEEEcCCcceeeeeeeeeCCEEEEE-EccCCeEEEEeCCCCcEeEEEec
Q 003792 53 RKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITL-SSDGSTLRAWNLPDGQMVWESFL 124 (795)
Q Consensus 53 ~~~v~vat~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~V-s~~g~~v~A~d~~tG~llWe~~~ 124 (795)
++.+-+++-+-.=.--|.+|++.+=.|.=-.. .+..+.. .-++-++. ||.+..-|.||..+|+-+=-...
T Consensus 273 G~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~-~v~~iaf-~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~g 343 (459)
T KOG0272|consen 273 GKFLGTASFDSTWRLWDLETKSELLLQEGHSK-GVFSIAF-QPDGSLAATGGLDSLGRVWDLRTGRCIMFLAG 343 (459)
T ss_pred CceeeecccccchhhcccccchhhHhhccccc-ccceeEe-cCCCceeeccCccchhheeecccCcEEEEecc
Confidence 44455566555555556666655444322111 1222211 23344444 55678899999999997654443
No 222
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=29.92 E-value=8.3e+02 Score=27.36 Aligned_cols=98 Identities=13% Similarity=0.003 Sum_probs=50.2
Q ss_pred CEEEEEECCCC---cEEEEEeccCcceeeeeEEEEecCCEEEEEEecCCceeEEEEEEcCCCce-eeeeeeeccCC-cc-
Q 003792 154 GCLHAVSSIDG---EILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGEL-LNHETAAFSGG-FV- 227 (795)
Q Consensus 154 g~l~ald~~tG---~~~W~~~~~~~~~~~~~vv~s~~~~~Vyvv~~~g~~~~~v~ald~~tG~~-~w~~~v~~~~~-~~- 227 (795)
..++.++..++ ...|+.-.+........+ ...++.+|+.+..+....+|++++..+... -|+..+..+.. ..
T Consensus 252 s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v--~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l 329 (414)
T PF02897_consen 252 SEVYLLDLDDGGSPDAKPKLLSPREDGVEYYV--DHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSL 329 (414)
T ss_dssp EEEEEEECCCTTTSS-SEEEEEESSSS-EEEE--EEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEE
T ss_pred CeEEEEeccccCCCcCCcEEEeCCCCceEEEE--EccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeE
Confidence 57888888886 455554333211111122 235888998887766677999999998876 35543333222 11
Q ss_pred cceEEecCcEEEEEECCC--CeEEEEEee
Q 003792 228 GDVALVSSDTLVTLDTTR--SILVTVSFK 254 (795)
Q Consensus 228 ~~~~~vg~~~lv~~d~~~--~~L~v~~l~ 254 (795)
..+. +.++.++.....+ ..|.+.++.
T Consensus 330 ~~~~-~~~~~Lvl~~~~~~~~~l~v~~~~ 357 (414)
T PF02897_consen 330 EDVS-LFKDYLVLSYRENGSSRLRVYDLD 357 (414)
T ss_dssp EEEE-EETTEEEEEEEETTEEEEEEEETT
T ss_pred EEEE-EECCEEEEEEEECCccEEEEEECC
Confidence 1122 2233333332223 357777777
No 223
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=28.78 E-value=1.2e+02 Score=33.89 Aligned_cols=72 Identities=19% Similarity=0.343 Sum_probs=37.4
Q ss_pred CCCEEEEEeCCCEEEEEECcCCccceEEEcCCcceeeeeeeee-CCEEEEEEccCCeEEEEeCCCCcEeEEEecc
Q 003792 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIAL-GKYVITLSSDGSTLRAWNLPDGQMVWESFLR 125 (795)
Q Consensus 52 ~~~~v~vat~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~-g~~~V~Vs~~g~~v~A~d~~tG~llWe~~~~ 125 (795)
++..|++++.+..|-......=-++=.+-|+-..=+..+ .. .++.+.=++++++||.||..+|+.+=...+.
T Consensus 162 D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~i--sl~~~~~LlS~sGD~tlr~Wd~~sgk~L~t~dl~ 234 (390)
T KOG3914|consen 162 DDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTI--SLTDNYLLLSGSGDKTLRLWDITSGKLLDTCDLS 234 (390)
T ss_pred CCCEEEEecCCceEEEEecCcccchhhhccccHhheeee--eeccCceeeecCCCCcEEEEecccCCcccccchh
Confidence 455577777777666554432211111222111111122 23 3334332445689999999999999555544
No 224
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=28.45 E-value=1.3e+02 Score=21.51 Aligned_cols=30 Identities=10% Similarity=0.249 Sum_probs=21.6
Q ss_pred CCEEEEEEecCCceeEEEEEEcCCCceeeeeee
Q 003792 188 SDQIYVVGYAGSSQFHAYQINAMNGELLNHETA 220 (795)
Q Consensus 188 ~~~Vyvv~~~g~~~~~v~ald~~tG~~~w~~~v 220 (795)
++.+|+....++ .+..+|+.+++.+.+..+
T Consensus 3 ~~~lyv~~~~~~---~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 3 GTKLYVTNSGSN---TVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCEEEEEeCCCC---EEEEEECCCCeEEEEEEC
Confidence 456787654444 688899999988877754
No 225
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=28.24 E-value=9.3e+02 Score=27.41 Aligned_cols=98 Identities=16% Similarity=0.174 Sum_probs=59.4
Q ss_pred EEEEEECcCCccceEEEcCCcceeeeeeeeeCCEEEEEEccCCeEEEEeCCCCcEeEEEeccCccccCCceecccc--cc
Q 003792 64 VIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTN--LK 141 (795)
Q Consensus 64 ~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~~~~~~~s~~~~~~~~~--~~ 141 (795)
.|.-.|. +|+++|+...+. +.+..+.-...+.+|.|..+ |.++-+|.. |.. ++.+..+.. ...+.... ..
T Consensus 62 ~I~iys~-sG~ll~~i~w~~-~~iv~~~wt~~e~LvvV~~d-G~v~vy~~~-G~~--~fsl~~~i~--~~~v~e~~i~~~ 133 (410)
T PF04841_consen 62 SIQIYSS-SGKLLSSIPWDS-GRIVGMGWTDDEELVVVQSD-GTVRVYDLF-GEF--QFSLGEEIE--EEKVLECRIFAI 133 (410)
T ss_pred EEEEECC-CCCEeEEEEECC-CCEEEEEECCCCeEEEEEcC-CEEEEEeCC-Cce--eechhhhcc--ccCccccccccc
Confidence 3666664 799999999987 34544433567788888875 589999976 777 666544331 11111100 01
Q ss_pred ccC-CCeEEEE-eCCEEEEEECCCCcEEEEE
Q 003792 142 VDK-DSLILVS-SKGCLHAVSSIDGEILWTR 170 (795)
Q Consensus 142 ~~~-~~~V~V~-~~g~l~ald~~tG~~~W~~ 170 (795)
... .| ++++ .+++++.++.-+...+|+.
T Consensus 134 ~~~~~G-ivvLt~~~~~~~v~n~~~~~~~~~ 163 (410)
T PF04841_consen 134 WFYKNG-IVVLTGNNRFYVVNNIDEPVKLRR 163 (410)
T ss_pred ccCCCC-EEEECCCCeEEEEeCccccchhhc
Confidence 111 34 4444 6888999977665555553
No 226
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=28.16 E-value=7e+02 Score=25.97 Aligned_cols=155 Identities=13% Similarity=0.023 Sum_probs=0.0
Q ss_pred eeeCCEEEEEEccCCeEEEEeCCCCcEeEEEeccCccccCCceeccccccccCCCeEEEEeCCEEEEEECCCCcEEE---
Q 003792 92 IALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSSKGCLHAVSSIDGEILW--- 168 (795)
Q Consensus 92 ~~~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~~~~~~~s~~~~~~~~~~~~~~~~~V~V~~~g~l~ald~~tG~~~W--- 168 (795)
+..+++.+++|.++| ++.++. +....|..-...... ..+.+++. -+.+++++|+.|++++..+-...=
T Consensus 3 ~~~~~~~L~vGt~~G-l~~~~~-~~~~~~~~i~~~~~I-~ql~vl~~------~~~llvLsd~~l~~~~L~~l~~~~~~~ 73 (275)
T PF00780_consen 3 ADSWGDRLLVGTEDG-LYVYDL-SDPSKPTRILKLSSI-TQLSVLPE------LNLLLVLSDGQLYVYDLDSLEPVSTSA 73 (275)
T ss_pred cccCCCEEEEEECCC-EEEEEe-cCCccceeEeecceE-EEEEEecc------cCEEEEEcCCccEEEEchhhccccccc
Q ss_pred ------------EEeccCcceeeeeEEEEecCCEEEEEEecCCceeEEEEEEcCCCce-eeeeeeeccCCcccceEEecC
Q 003792 169 ------------TRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGEL-LNHETAAFSGGFVGDVALVSS 235 (795)
Q Consensus 169 ------------~~~~~~~~~~~~~vv~s~~~~~Vyvv~~~g~~~~~v~ald~~tG~~-~w~~~v~~~~~~~~~~~~vg~ 235 (795)
......+..... ......+....+++... ++.++.++...++- .....+..|.....-..+ +
T Consensus 74 ~~~~~~~~~~~~~~~~~~~v~~f~-~~~~~~~~~~L~va~kk--~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~ 148 (275)
T PF00780_consen 74 PLAFPKSRSLPTKLPETKGVSFFA-VNGGHEGSRRLCVAVKK--KILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--G 148 (275)
T ss_pred cccccccccccccccccCCeeEEe-eccccccceEEEEEECC--EEEEEEEECCcccccceeEEEEcCCCcEEEEEe--C
Q ss_pred cEEEEEECCCCeEEEEEeecCeeeeEEEe
Q 003792 236 DTLVTLDTTRSILVTVSFKNRKIAFQETH 264 (795)
Q Consensus 236 ~~lv~~d~~~~~L~v~~l~sg~~~~~~~~ 264 (795)
+.+++.. .+....+|+.++. .++++
T Consensus 149 ~~i~v~~--~~~f~~idl~~~~--~~~l~ 173 (275)
T PF00780_consen 149 NKICVGT--SKGFYLIDLNTGS--PSELL 173 (275)
T ss_pred CEEEEEe--CCceEEEecCCCC--ceEEe
No 227
>PF01456 Mucin: Mucin-like glycoprotein; InterPro: IPR000458 This family of trypanosomal proteins resemble vertebrate mucins. The protein consists of three regions. The N and C terminii are conserved between all members of the family, whereas the central region is not well conserved and contains a large number of threonine residues which can be glycosylated []. Indirect evidence suggested that these genes might encode the core protein of parasite mucins, glycoproteins that were proposed to be involved in the interaction with, and invasion of, mammalian host cells.
Probab=27.98 E-value=42 Score=32.10 Aligned_cols=27 Identities=26% Similarity=0.422 Sum_probs=18.0
Q ss_pred ChHHHHHHHHHHHHhcccCccceeecc
Q 003792 1 MAIRFIILTLLFLSSCTIPSLSLYEDQ 27 (795)
Q Consensus 1 ~~~~~~l~~l~~l~~~~~~~~Al~edq 27 (795)
|=-++|||+||+|++|.-++...-+.+
T Consensus 1 MmtcRLLCalLvlaLcCCpsvc~t~~~ 27 (143)
T PF01456_consen 1 MMTCRLLCALLVLALCCCPSVCATASE 27 (143)
T ss_pred CchHHHHHHHHHHHHHcCcchhccccc
Confidence 335789999999999764433333444
No 228
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=27.79 E-value=1e+03 Score=27.68 Aligned_cols=65 Identities=18% Similarity=0.331 Sum_probs=42.6
Q ss_pred EccCCeEEEEeCCCCcEeEEEeccCccccCCceeccccccccCCCeEEE-E-eCCEEEEEECCCCcEEEEEeccC
Q 003792 102 SSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILV-S-SKGCLHAVSSIDGEILWTRDFAA 174 (795)
Q Consensus 102 s~~g~~v~A~d~~tG~llWe~~~~~~~~s~~~~~~~~~~~~~~~~~V~V-~-~~g~l~ald~~tG~~~W~~~~~~ 174 (795)
.+.++.|++||+.+|.++-.+.-..+.+ .++.+.+ ++..+. . .+|.|.-.+..+|+..=++....
T Consensus 428 as~dstV~lwdv~~gv~i~~f~kH~~pV-ysvafS~-------~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~ 494 (524)
T KOG0273|consen 428 ASFDSTVKLWDVESGVPIHTLMKHQEPV-YSVAFSP-------NGRYLASGSLDGCVHIWSTKTGKLVKSYQGTG 494 (524)
T ss_pred eecCCeEEEEEccCCceeEeeccCCCce-EEEEecC-------CCcEEEecCCCCeeEeccccchheeEeecCCC
Confidence 4456899999999999999874444332 2222322 333333 3 38888888888888777765544
No 229
>COG3045 CreA Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.50 E-value=1.7e+02 Score=28.43 Aligned_cols=58 Identities=19% Similarity=0.265 Sum_probs=33.5
Q ss_pred ChHHHHHHHHHHHHhcccCccceeeccccceeEEEeccCc--eeeeeeeeeccCCCEEEEEeC
Q 003792 1 MAIRFIILTLLFLSSCTIPSLSLYEDQVGLMDWHQQYIGK--VKHAVFHTQKTGRKRVVVSTE 61 (795)
Q Consensus 1 ~~~~~~l~~l~~l~~~~~~~~Al~edq~G~~dW~~~~vG~--~~~~~f~~~~~~~~~v~vat~ 61 (795)
|++|.+|++.++++.++.++. .+++|+++=-...+|. ..-..|+.|...+=..|++.-
T Consensus 3 ~~~~~~ll~~~~~~~l~~~a~---aE~iG~V~tvf~~~G~D~IvveafdDP~V~gVTCyvs~a 62 (165)
T COG3045 3 MKIRLLLLAGLLLLLLVGLAH---AEEIGSVSTVFDWLGNDHIVVEAFDDPDVKGVTCYVSRA 62 (165)
T ss_pred chHHHHHHHHHHHHHhccccc---hhhccccceeEEEecCCcEEEEecCCCCcCcEEEEEEEe
Confidence 678888888874444444443 5567765422333443 334568777664445676654
No 230
>PRK01742 tolB translocation protein TolB; Provisional
Probab=26.64 E-value=9.8e+02 Score=27.15 Aligned_cols=183 Identities=16% Similarity=0.151 Sum_probs=83.5
Q ss_pred CCE-EEEEeCC-----CEEEEEECcCCccceEEEcCC-cceeeeeee-eeCCEEEEEEcc--CCeEEEEeCCCCcEeEEE
Q 003792 53 RKR-VVVSTEE-----NVIASLDLRHGEIFWRHVLGI-NDVVDGIDI-ALGKYVITLSSD--GSTLRAWNLPDGQMVWES 122 (795)
Q Consensus 53 ~~~-v~vat~~-----g~l~ALn~~tG~ivWR~~l~~-~~~i~~l~~-~~g~~~V~Vs~~--g~~v~A~d~~tG~llWe~ 122 (795)
..+ .||.+.. ..|.-.|.. |.-. +.+.. ...+..... ..|+.+++++.+ +..|+.||..+|+..--.
T Consensus 168 ~~ria~v~~~~~~~~~~~i~i~d~d-g~~~--~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~ 244 (429)
T PRK01742 168 RTRIAYVVQKNGGSQPYEVRVADYD-GFNQ--FIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVA 244 (429)
T ss_pred CCEEEEEEEEcCCCceEEEEEECCC-CCCc--eEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEe
Confidence 344 4776543 366666764 4432 22222 211221111 356667777643 357999999999754323
Q ss_pred eccCccccCCceeccccccccCCCeEEE-Ee-CC--EEEEEECCCCcEEEEEeccCcceeeeeEEEEecCCEEEEEEecC
Q 003792 123 FLRGSKHSKPLLLVPTNLKVDKDSLILV-SS-KG--CLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAG 198 (795)
Q Consensus 123 ~~~~~~~s~~~~~~~~~~~~~~~~~V~V-~~-~g--~l~ald~~tG~~~W~~~~~~~~~~~~~vv~s~~~~~Vyvv~~~g 198 (795)
...+.. ..+.+.| + ++.+++ .. +| .|+.+|..+|+..=-...... ...+..+.++..+++.+..+
T Consensus 245 ~~~g~~--~~~~wSP-----D-G~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~---~~~~~wSpDG~~i~f~s~~~ 313 (429)
T PRK01742 245 SFRGHN--GAPAFSP-----D-GSRLAFASSKDGVLNIYVMGANGGTPSQLTSGAGN---NTEPSWSPDGQSILFTSDRS 313 (429)
T ss_pred cCCCcc--CceeECC-----C-CCEEEEEEecCCcEEEEEEECCCCCeEeeccCCCC---cCCEEECCCCCEEEEEECCC
Confidence 222211 1122222 2 233433 32 44 477888877764311111111 11122233444555444322
Q ss_pred CceeEEEEEEcCCCceeeeeeeeccCCcccceEEecCcEEEEEECCCCeEEEEEeecCe
Q 003792 199 SSQFHAYQINAMNGELLNHETAAFSGGFVGDVALVSSDTLVTLDTTRSILVTVSFKNRK 257 (795)
Q Consensus 199 ~~~~~v~ald~~tG~~~w~~~v~~~~~~~~~~~~vg~~~lv~~d~~~~~L~v~~l~sg~ 257 (795)
....++.++..+|..... . ..+. .......+..++.... ..+...|+.+|+
T Consensus 314 -g~~~I~~~~~~~~~~~~l---~-~~~~-~~~~SpDG~~ia~~~~--~~i~~~Dl~~g~ 364 (429)
T PRK01742 314 -GSPQVYRMSASGGGASLV---G-GRGY-SAQISADGKTLVMING--DNVVKQDLTSGS 364 (429)
T ss_pred -CCceEEEEECCCCCeEEe---c-CCCC-CccCCCCCCEEEEEcC--CCEEEEECCCCC
Confidence 134678888776654221 1 1111 1111113344444432 356667888776
No 231
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=26.57 E-value=5.7e+02 Score=30.98 Aligned_cols=94 Identities=22% Similarity=0.263 Sum_probs=50.4
Q ss_pred EEEEEeCCCEEEEEECcCCccceEEEcCCcceeeeeeeeeCCEEEEEEccCCeEEEEeCCCCcEeEEEeccCccccCCce
Q 003792 55 RVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLL 134 (795)
Q Consensus 55 ~v~vat~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~~~~~~~s~~~~ 134 (795)
...-++.+|.|---|. ||+.+=|+.--+.- +..+....+++.|+-+|.++++|-|+-. ...=...+++... =+..
T Consensus 192 ~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~-vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsi-Wsa~ 266 (745)
T KOG0301|consen 192 HFLSCSNDGSIRLWDL-DGEVLLEMHGHTNF-VYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSI-WSAK 266 (745)
T ss_pred CeEeecCCceEEEEec-cCceeeeeeccceE-EEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCccce-EEEE
Confidence 3445555676666665 67666665433221 1122223455555546778999999875 4443334433211 0111
Q ss_pred eccccccccCCCeEEEE-eCCEEEEEE
Q 003792 135 LVPTNLKVDKDSLILVS-SKGCLHAVS 160 (795)
Q Consensus 135 ~~~~~~~~~~~~~V~V~-~~g~l~ald 160 (795)
.+. .++++|. +||.|+-+.
T Consensus 267 ~L~-------NgDIvvg~SDG~VrVfT 286 (745)
T KOG0301|consen 267 VLL-------NGDIVVGGSDGRVRVFT 286 (745)
T ss_pred Eee-------CCCEEEeccCceEEEEE
Confidence 221 5677776 688877665
No 232
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=25.91 E-value=3.9e+02 Score=32.11 Aligned_cols=100 Identities=14% Similarity=0.197 Sum_probs=59.0
Q ss_pred EEEE-EeCCCEEEEEECcCCccceEEEcCCcceeeeeeeee-CCEEEEEEccCCeEEEEeCCCCcEeEEEeccCccccCC
Q 003792 55 RVVV-STEENVIASLDLRHGEIFWRHVLGINDVVDGIDIAL-GKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKP 132 (795)
Q Consensus 55 ~v~v-at~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~-g~~~V~Vs~~g~~v~A~d~~tG~llWe~~~~~~~~s~~ 132 (795)
.++| ++-++.|--.|++|++.+=+.. +-.+++..+.+.. |..++. ++.+++++.||..--+=+-.+.+..+..
T Consensus 184 t~ivsGgtek~lr~wDprt~~kimkLr-GHTdNVr~ll~~dDGt~~ls-~sSDgtIrlWdLgqQrCl~T~~vH~e~V--- 258 (735)
T KOG0308|consen 184 TIIVSGGTEKDLRLWDPRTCKKIMKLR-GHTDNVRVLLVNDDGTRLLS-ASSDGTIRLWDLGQQRCLATYIVHKEGV--- 258 (735)
T ss_pred eEEEecCcccceEEeccccccceeeee-ccccceEEEEEcCCCCeEee-cCCCceEEeeeccccceeeeEEeccCce---
Confidence 3454 4457889999999999988877 4445666553222 223334 3446799999996555555555544322
Q ss_pred ceeccccccccCCCeEEEE-eCCEEEEEECCC
Q 003792 133 LLLVPTNLKVDKDSLILVS-SKGCLHAVSSID 163 (795)
Q Consensus 133 ~~~~~~~~~~~~~~~V~V~-~~g~l~ald~~t 163 (795)
+....+ ..-..||.. .+|.+++-|..+
T Consensus 259 -WaL~~~---~sf~~vYsG~rd~~i~~Tdl~n 286 (735)
T KOG0308|consen 259 -WALQSS---PSFTHVYSGGRDGNIYRTDLRN 286 (735)
T ss_pred -EEEeeC---CCcceEEecCCCCcEEecccCC
Confidence 222110 001334444 377788887766
No 233
>PF14339 DUF4394: Domain of unknown function (DUF4394)
Probab=25.45 E-value=2.2e+02 Score=30.06 Aligned_cols=88 Identities=10% Similarity=0.058 Sum_probs=50.3
Q ss_pred ccccceeEEEeccCceeee---eeeeeccCCCEEEEEeCCCEEEEEECcCCccceE--EEcCCcceeeeeee-----eeC
Q 003792 26 DQVGLMDWHQQYIGKVKHA---VFHTQKTGRKRVVVSTEENVIASLDLRHGEIFWR--HVLGINDVVDGIDI-----ALG 95 (795)
Q Consensus 26 dq~G~~dW~~~~vG~~~~~---~f~~~~~~~~~v~vat~~g~l~ALn~~tG~ivWR--~~l~~~~~i~~l~~-----~~g 95 (795)
++...+.+..+.-|-.... -++ -++..+.+|..+..|.||-||+.||.--.- -.+... +.+... +..
T Consensus 9 ~~p~~~~~~~~vtGL~~ge~l~GID-~Rpa~G~LYgl~~~g~lYtIn~~tG~aT~vg~s~~~~a--l~g~~~gvDFNP~a 85 (236)
T PF14339_consen 9 DNPAKVTSSVAVTGLAAGESLVGID-FRPANGQLYGLGSTGRLYTINPATGAATPVGASPLTVA--LSGTAFGVDFNPAA 85 (236)
T ss_pred CCCcceeccEEeecccCCCeEEEEE-eecCCCCEEEEeCCCcEEEEECCCCeEEEeeccccccc--ccCceEEEecCccc
Confidence 4445566666665522211 122 123578899999999999999999984333 112111 111100 133
Q ss_pred CEEEEEEccCCeEEEEeCCCCc
Q 003792 96 KYVITLSSDGSTLRAWNLPDGQ 117 (795)
Q Consensus 96 ~~~V~Vs~~g~~v~A~d~~tG~ 117 (795)
+.+=+||..| +-.-+|+.||.
T Consensus 86 DRlRvvs~~G-qNlR~npdtGa 106 (236)
T PF14339_consen 86 DRLRVVSNTG-QNLRLNPDTGA 106 (236)
T ss_pred CcEEEEccCC-cEEEECCCCCC
Confidence 4555667655 55557888888
No 234
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=25.21 E-value=3e+02 Score=34.31 Aligned_cols=63 Identities=11% Similarity=0.166 Sum_probs=45.0
Q ss_pred CCEEEEEeCCCEEEEEECcCC--ccceEEEcC--CcceeeeeeeeeCCEEEEEEccCCeEEEEeCCCCc
Q 003792 53 RKRVVVSTEENVIASLDLRHG--EIFWRHVLG--INDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQ 117 (795)
Q Consensus 53 ~~~v~vat~~g~l~ALn~~tG--~ivWR~~l~--~~~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~tG~ 117 (795)
....|++-.+|.|..+|||-. +++|.+.-. ..-.+.++ +..++|.|+||+..|.||.+|. .|.
T Consensus 542 ~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~-aTt~~G~iavgs~~G~IRLyd~-~g~ 608 (794)
T PF08553_consen 542 NEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCF-ATTEDGYIAVGSNKGDIRLYDR-LGK 608 (794)
T ss_pred CCceEEEECCCceEEeccCCCCCceeeccccccccCCCceEE-EecCCceEEEEeCCCcEEeecc-cch
Confidence 345899999999999999974 367755322 11123344 4568888888888889999995 563
No 235
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=24.84 E-value=4e+02 Score=34.49 Aligned_cols=71 Identities=24% Similarity=0.287 Sum_probs=54.5
Q ss_pred EEEEEeCCCEEEEEECcCCccceEEEcCCc-ceeeeeeeeeCCEEEEEEccCCeEEEEeCCCCcEe--EEEecc
Q 003792 55 RVVVSTEENVIASLDLRHGEIFWRHVLGIN-DVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMV--WESFLR 125 (795)
Q Consensus 55 ~v~vat~~g~l~ALn~~tG~ivWR~~l~~~-~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~tG~ll--We~~~~ 125 (795)
.|.++|..+.+...|.++-..+||.+.+.. |.+..+.+.....+.++|+..|.+..||..=+.++ |+.+..
T Consensus 1165 ~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~ 1238 (1431)
T KOG1240|consen 1165 VLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPAR 1238 (1431)
T ss_pred eEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCccc
Confidence 688899999999999999999999988766 34444422345567777877789999999988765 554444
No 236
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=24.73 E-value=9.1e+02 Score=26.11 Aligned_cols=150 Identities=9% Similarity=0.024 Sum_probs=82.7
Q ss_pred eeCCEEEEEEccCCeEEEEeCCCCcEeEEEeccCccccCCceeccccccccCC-CeEEEE-eCCEEEEEECCCCcEEEEE
Q 003792 93 ALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKD-SLILVS-SKGCLHAVSSIDGEILWTR 170 (795)
Q Consensus 93 ~~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~~~~~~~s~~~~~~~~~~~~~~~-~~V~V~-~~g~l~ald~~tG~~~W~~ 170 (795)
...+++++-.+.+.....|=+.+|+.+=++....+.. +.+. ++.+ +.++-. .|.....-|..+|+++-++
T Consensus 19 N~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGav----W~~D----id~~s~~liTGSAD~t~kLWDv~tGk~la~~ 90 (327)
T KOG0643|consen 19 NREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAV----WCCD----IDWDSKHLITGSADQTAKLWDVETGKQLATW 90 (327)
T ss_pred cCCCcEEEEecCCCCceEEEecCCceeeeecCCCceE----EEEE----ecCCcceeeeccccceeEEEEcCCCcEEEEe
Confidence 3455677655556788899988999988888776543 4442 2322 233333 3778888899999999877
Q ss_pred eccCcceeeeeEEEEecCCEEEEEEecC--CceeEEEEEEcCCCc--eeeee---eeeccCCcccceEEe---cCcEEEE
Q 003792 171 DFAAESVEVQQVIQLDESDQIYVVGYAG--SSQFHAYQINAMNGE--LLNHE---TAAFSGGFVGDVALV---SSDTLVT 240 (795)
Q Consensus 171 ~~~~~~~~~~~vv~s~~~~~Vyvv~~~g--~~~~~v~ald~~tG~--~~w~~---~v~~~~~~~~~~~~v---g~~~lv~ 240 (795)
+.+.+.. ++- -.-++.+++++.+. ++.-.|..+|...-. ...+. ++.+|. +.....+ -+..++.
T Consensus 91 k~~~~Vk---~~~-F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~--skit~a~Wg~l~~~ii~ 164 (327)
T KOG0643|consen 91 KTNSPVK---RVD-FSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPD--SKITSALWGPLGETIIA 164 (327)
T ss_pred ecCCeeE---EEe-eccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCc--cceeeeeecccCCEEEE
Confidence 7765432 221 12344444445442 233356666665222 11111 111111 1111111 1234444
Q ss_pred EECCCCeEEEEEeecCe
Q 003792 241 LDTTRSILVTVSFKNRK 257 (795)
Q Consensus 241 ~d~~~~~L~v~~l~sg~ 257 (795)
.+ ..|++...|+.+|.
T Consensus 165 Gh-e~G~is~~da~~g~ 180 (327)
T KOG0643|consen 165 GH-EDGSISIYDARTGK 180 (327)
T ss_pred ec-CCCcEEEEEcccCc
Confidence 44 36889999999875
No 237
>PF01453 B_lectin: D-mannose binding lectin; InterPro: IPR001480 A bulb lectin super-family (Amaryllidaceae, Orchidaceae and Aliaceae) contains a ~115-residue-long domain whose overall three dimensional fold is very similar to that of [, ]: Dictyostelium discoideum comitin, an actin binding protein Curculigo latifolia curculin, a sweet tasting and taste-modifying protein This domain generally binds mannose, but in at least one protein, curculin, it is apparently devoid of mannose-binding activity. Each bulb-type lectin domain consists of three sequential beta-sheet subdomains (I, II, III) that are inter-related by pseudo three-fold symmetry. The three subdomains are flat four-stranded, antiparrallel beta-sheets. Together they form a 12-stranded beta-barrel in which the barrel axis coincides with the pseudo 3-fold axis.; GO: 0005529 sugar binding; PDB: 3M7H_A 3M7J_B 3MEZ_D 1DLP_A 1BWU_D 1KJ1_A 1B2P_A 1XD6_A 2DPF_C 2D04_B ....
Probab=24.71 E-value=4.5e+02 Score=24.09 Aligned_cols=59 Identities=15% Similarity=0.388 Sum_probs=38.5
Q ss_pred CCEEEEEeCCCEEEEEECcCCccceEEE-cCCcceeeeeeeeeCCEEEEEEccCCeEEEEeCCCCcEeEEE
Q 003792 53 RKRVVVSTEENVIASLDLRHGEIFWRHV-LGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWES 122 (795)
Q Consensus 53 ~~~v~vat~~g~l~ALn~~tG~ivWR~~-l~~~~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~tG~llWe~ 122 (795)
++..+..+++|.|...|.. |+++|.-. ....+. ..-.+.+..+ |.+...| .+|+.+|+.
T Consensus 19 ~~~~L~l~~dGnLvl~~~~-~~~iWss~~t~~~~~--------~~~~~~L~~~-GNlvl~d-~~~~~lW~S 78 (114)
T PF01453_consen 19 GNYTLILQSDGNLVLYDSN-GSVIWSSNNTSGRGN--------SGCYLVLQDD-GNLVLYD-SSGNVLWQS 78 (114)
T ss_dssp TTEEEEEETTSEEEEEETT-TEEEEE--S-TTSS---------SSEEEEEETT-SEEEEEE-TTSEEEEES
T ss_pred ccccceECCCCeEEEEcCC-CCEEEEecccCCccc--------cCeEEEEeCC-CCEEEEe-ecceEEEee
Confidence 4567888889999999865 88999972 222110 1223444543 5788888 599999997
No 238
>TIGR00548 lolB outer membrane lipoprotein LolB. This protein, LolB, is known so far only in the gamma and beta subdivisions of the Proteobacteria. It is a processed, lipid-modified outer membrane protein. It is required in E. coli for insertion of the major outer lipoprotein (Lpp) into the outer membrane. Lpp is transferred to LolB from the carrier protein LolA in the periplasm. Previously, this protein was thought to play in role in 5-aminolevulinic acid synthesis and was designated HemM.
Probab=24.64 E-value=1.3e+02 Score=30.72 Aligned_cols=58 Identities=14% Similarity=0.137 Sum_probs=32.0
Q ss_pred CCEEEEEeCCCEEEEEECcCCccceEEEcCCcceeeeeeeeeCCEEEEEEccCCeEEEEeCCCCcE
Q 003792 53 RKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQM 118 (795)
Q Consensus 53 ~~~v~vat~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~tG~l 118 (795)
.+++-+-+.+. .-+|...|+|.-+....+... -..|..++-+.++++.+...+ .+|+.
T Consensus 51 ~Gria~~~~~~------~~sa~~~W~q~~~~~~~l~L~-~PlG~~~~~l~~~~~~v~l~~-~~g~~ 108 (202)
T TIGR00548 51 DGKVGYISPRD------SGSGRFFWQQRNQGYYDLRLS-GPLGRGALRLTGREGAVSLED-NGGGR 108 (202)
T ss_pred eeeEEEECCCc------eeEEEEEEEECCCCceEEEEE-ccCCCcEEEEEEcCCEEEEEE-CCCCE
Confidence 45555555553 335667899985544344433 135666666555555565555 45544
No 239
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.03 E-value=1.5e+03 Score=28.55 Aligned_cols=172 Identities=12% Similarity=0.189 Sum_probs=82.0
Q ss_pred EEEEEc-cCCeEEEEeCCCCcEeEEEeccCcccc--CCceeccccccccCCCeEEEE-e-CCEEEEEECCCCcEEEEEec
Q 003792 98 VITLSS-DGSTLRAWNLPDGQMVWESFLRGSKHS--KPLLLVPTNLKVDKDSLILVS-S-KGCLHAVSSIDGEILWTRDF 172 (795)
Q Consensus 98 ~V~Vs~-~g~~v~A~d~~tG~llWe~~~~~~~~s--~~~~~~~~~~~~~~~~~V~V~-~-~g~l~ald~~tG~~~W~~~~ 172 (795)
-++||| +++.|-.|.. +-.-.||...-.+-.- ....+-| ..++++. + |+.+...|...-..+=+++.
T Consensus 219 pliVSG~DDRqVKlWrm-netKaWEvDtcrgH~nnVssvlfhp-------~q~lIlSnsEDksirVwDm~kRt~v~tfrr 290 (1202)
T KOG0292|consen 219 PLIVSGADDRQVKLWRM-NETKAWEVDTCRGHYNNVSSVLFHP-------HQDLILSNSEDKSIRVWDMTKRTSVQTFRR 290 (1202)
T ss_pred ceEEecCCcceeeEEEe-ccccceeehhhhcccCCcceEEecC-------ccceeEecCCCccEEEEecccccceeeeec
Confidence 355554 6788999976 5677899876433210 1111111 2233332 2 44444444333222222222
Q ss_pred cCcceeeeeEEEEecCCEEEEEEecCCceeEEEEEEcCCCceeeeeeeeccCCcccceEEecCcEEEEEECCCCeEEEEE
Q 003792 173 AAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAFSGGFVGDVALVSSDTLVTLDTTRSILVTVS 252 (795)
Q Consensus 173 ~~~~~~~~~vv~s~~~~~Vyvv~~~g~~~~~v~ald~~tG~~~w~~~v~~~~~~~~~~~~vg~~~lv~~d~~~~~L~v~~ 252 (795)
..+..++++.... +.++|---.+|.++.... ...+++.+.+|.+.-+. ...++..|
T Consensus 291 --------------endRFW~laahP~--lNLfAAgHDsGm~VFkle------RErpa~~v~~n~LfYvk--d~~i~~~d 346 (1202)
T KOG0292|consen 291 --------------ENDRFWILAAHPE--LNLFAAGHDSGMIVFKLE------RERPAYAVNGNGLFYVK--DRFIRSYD 346 (1202)
T ss_pred --------------cCCeEEEEEecCC--cceeeeecCCceEEEEEc------ccCceEEEcCCEEEEEc--cceEEeee
Confidence 3444444444321 234444444566655442 12245556666555554 45788888
Q ss_pred eecCeeeeEEEeecccCCCCCCceEEeecCCcceeEEEecC--cEEEEEEe-cCCcEEEEEeec
Q 003792 253 FKNRKIAFQETHLSNLGEDSSGMVEILPSSLTGMFTVKINN--YKLFIRLT-SEDKLEVVHKVD 313 (795)
Q Consensus 253 l~sg~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~-~~~~~~v~~~~~ 313 (795)
+.+.+ +..-.+|. .... +. ..++.+.-+| +.+|+-.+ ++|..+.+..-.
T Consensus 347 ~~t~~-d~~v~~lr---~~g~--~~------~~~~smsYNpae~~vlics~~~n~~y~L~~ipk 398 (1202)
T KOG0292|consen 347 LRTQK-DTAVASLR---RPGT--LW------QPPRSLSYNPAENAVLICSNLDNGEYELVQIPK 398 (1202)
T ss_pred ccccc-cceeEecc---CCCc--cc------CCcceeeeccccCeEEEEeccCCCeEEEEEecC
Confidence 88743 23333332 2111 00 1144555555 55666644 456666665443
No 240
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=23.33 E-value=2.6e+02 Score=31.73 Aligned_cols=64 Identities=17% Similarity=0.243 Sum_probs=34.9
Q ss_pred CCEEEEEeC---CCEEEEEECcCCccceEEEcCCcc--eeeeeeeeeCCEEEEEEccCCeEEEEeCCCCcEe
Q 003792 53 RKRVVVSTE---ENVIASLDLRHGEIFWRHVLGIND--VVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMV 119 (795)
Q Consensus 53 ~~~v~vat~---~g~l~ALn~~tG~ivWR~~l~~~~--~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~tG~ll 119 (795)
+++++++++ ...++.||.+||++ +|..+.++ ...+.-...+..++|+.. +..|+++|+.|++..
T Consensus 47 G~kllF~s~~dg~~nly~lDL~t~~i--~QLTdg~g~~~~g~~~s~~~~~~~Yv~~-~~~l~~vdL~T~e~~ 115 (386)
T PF14583_consen 47 GRKLLFASDFDGNRNLYLLDLATGEI--TQLTDGPGDNTFGGFLSPDDRALYYVKN-GRSLRRVDLDTLEER 115 (386)
T ss_dssp S-EEEEEE-TTSS-EEEEEETTT-EE--EE---SS-B-TTT-EE-TTSSEEEEEET-TTEEEEEETTT--EE
T ss_pred CCEEEEEeccCCCcceEEEEcccCEE--EECccCCCCCccceEEecCCCeEEEEEC-CCeEEEEECCcCcEE
Confidence 456666665 45799999999988 35444332 122221123555677765 358999999999864
No 241
>COG4447 Uncharacterized protein related to plant photosystem II stability/assembly factor [General function prediction only]
Probab=22.68 E-value=7.8e+02 Score=26.79 Aligned_cols=173 Identities=14% Similarity=0.203 Sum_probs=84.9
Q ss_pred EEEEEeCCCEEEEEECcCCccceEEEcCCccee---eeeeeeeCCEEEEEEccCCeEEEEeCCCCcEeEEEeccCccccC
Q 003792 55 RVVVSTEENVIASLDLRHGEIFWRHVLGINDVV---DGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSK 131 (795)
Q Consensus 55 ~v~vat~~g~l~ALn~~tG~ivWR~~l~~~~~i---~~l~~~~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~~~~~~~s~ 131 (795)
+-+..++.| +-|-.+||-.-|+...+..... .....+.+++.|.|+..|...+.|++ |+-.|.-.-..+. .
T Consensus 140 ~g~m~gd~G--ail~T~DgGk~Wk~l~e~~v~~~~~n~ia~s~dng~vaVg~rGs~f~T~~a--Gqt~~~~~g~~s~--~ 213 (339)
T COG4447 140 RGEMLGDQG--AILKTTDGGKNWKALVEKAVGLAVPNEIARSADNGYVAVGARGSFFSTWGA--GQTVWLPHGRNSS--R 213 (339)
T ss_pred hhhhhcccc--eEEEecCCcccHhHhcccccchhhhhhhhhhccCCeEEEecCcceEecCCC--CccEEeccCCCcc--c
Confidence 344445556 4566789999999877765321 11112456778888988878888887 7775554433322 2
Q ss_pred CceeccccccccCCCeEEEEeCCEEEEEECCCCcEEEEEeccCccee--eeeEEE--EecCCEEEEEEecCCceeEEEEE
Q 003792 132 PLLLVPTNLKVDKDSLILVSSKGCLHAVSSIDGEILWTRDFAAESVE--VQQVIQ--LDESDQIYVVGYAGSSQFHAYQI 207 (795)
Q Consensus 132 ~~~~~~~~~~~~~~~~V~V~~~g~l~ald~~tG~~~W~~~~~~~~~~--~~~vv~--s~~~~~Vyvv~~~g~~~~~v~al 207 (795)
..+.++. ..+..+-+++...-...-.+...| --|+-........ +..+.+ -.+++.+|+.+..|+ | |
T Consensus 214 ~letmg~--adag~~g~la~g~qg~~f~~~~~g-D~wsd~~~~~~~g~~~~Gl~d~a~~a~~~v~v~G~gGn----v--l 284 (339)
T COG4447 214 RLETMGL--ADAGSKGLLARGGQGDQFSWVCGG-DEWSDQGEPVNLGRRSWGLLDFAPRAPPEVWVSGIGGN----V--L 284 (339)
T ss_pred hhccccc--ccCCccceEEEccccceeecCCCc-ccccccccchhcccCCCccccccccCCCCeEEeccCcc----E--E
Confidence 3333331 112122344442111222332333 3454321111000 001111 136788998877652 2 2
Q ss_pred EcCCCceeeeeeeeccCCccc--ceEEecCc-EEEEEE
Q 003792 208 NAMNGELLNHETAAFSGGFVG--DVALVSSD-TLVTLD 242 (795)
Q Consensus 208 d~~tG~~~w~~~v~~~~~~~~--~~~~vg~~-~lv~~d 242 (795)
-...|-..|......+..+++ ++++.+.+ -++|.+
T Consensus 285 ~StdgG~t~skd~g~~er~s~l~~V~~ts~~~~~l~Gq 322 (339)
T COG4447 285 ASTDGGTTWSKDGGVEERVSNLYSVVFTSPKAGFLCGQ 322 (339)
T ss_pred EecCCCeeEeccCChhhhhhhhheEEeccCCceEEEcC
Confidence 235677777765444433332 34444332 344553
No 242
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=21.91 E-value=1.1e+03 Score=26.08 Aligned_cols=118 Identities=13% Similarity=0.083 Sum_probs=64.8
Q ss_pred cCCCEEEEEeCCCEEEEEECcCCccceEEEcCCcceeeeeeeeeCCEEEE-EEccCCeEEEEeCCCCcEeEEEeccCccc
Q 003792 51 TGRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVIT-LSSDGSTLRAWNLPDGQMVWESFLRGSKH 129 (795)
Q Consensus 51 ~~~~~v~vat~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~-Vs~~g~~v~A~d~~tG~llWe~~~~~~~~ 129 (795)
.++.++.++|.++.+.-.|...|.++-|..++.+.-...+++...+..|. .-.....|.-++...-+.+ +...+
T Consensus 75 ~dgr~LltsS~D~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~L---p~d~d-- 149 (405)
T KOG1273|consen 75 RDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVL---PKDDD-- 149 (405)
T ss_pred CCCCEeeeecCCceeEEEeccCCCceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeec---cCCCc--
Confidence 35667999999999999999999999999998883222232222222221 1222233333332111111 11111
Q ss_pred cCCceeccccccccC-CCeEEEE-eCCEEEEEECCCCcEEEEEeccC
Q 003792 130 SKPLLLVPTNLKVDK-DSLILVS-SKGCLHAVSSIDGEILWTRDFAA 174 (795)
Q Consensus 130 s~~~~~~~~~~~~~~-~~~V~V~-~~g~l~ald~~tG~~~W~~~~~~ 174 (795)
.+....+.....+. ++.++++ +.|.+.-+++.|=+.+=.++...
T Consensus 150 -~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits 195 (405)
T KOG1273|consen 150 -GDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITS 195 (405)
T ss_pred -cccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeech
Confidence 01111110001121 4567776 69999999999988775555543
No 243
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=21.89 E-value=2.7e+02 Score=33.10 Aligned_cols=31 Identities=23% Similarity=0.414 Sum_probs=25.4
Q ss_pred EEEEEccCCeEEEEeCCCCcEeEEEeccCcc
Q 003792 98 VITLSSDGSTLRAWNLPDGQMVWESFLRGSK 128 (795)
Q Consensus 98 ~V~Vs~~g~~v~A~d~~tG~llWe~~~~~~~ 128 (795)
.+.-|+++|.||.|...||+-+|.+.+.+..
T Consensus 414 wlasGsdDGtvriWEi~TgRcvr~~~~d~~I 444 (733)
T KOG0650|consen 414 WLASGSDDGTVRIWEIATGRCVRTVQFDSEI 444 (733)
T ss_pred eeeecCCCCcEEEEEeecceEEEEEeeccee
Confidence 3333566789999999999999999998754
No 244
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=21.57 E-value=1.2e+03 Score=26.29 Aligned_cols=146 Identities=14% Similarity=0.119 Sum_probs=0.0
Q ss_pred CCEEEEEeCCCEEEEEECcCCccceEEEcC--CcceeeeeeeeeCCEEEEE--EccCCeEEEEeCCCCcEeEEEeccCcc
Q 003792 53 RKRVVVSTEENVIASLDLRHGEIFWRHVLG--INDVVDGIDIALGKYVITL--SSDGSTLRAWNLPDGQMVWESFLRGSK 128 (795)
Q Consensus 53 ~~~v~vat~~g~l~ALn~~tG~ivWR~~l~--~~~~i~~l~~~~g~~~V~V--s~~g~~v~A~d~~tG~llWe~~~~~~~ 128 (795)
++|++|.=++. ++-.|.++=+++=..... .+-..-.+.+..++-.+.. +...|.|+.||+.+=+..=........
T Consensus 97 r~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~ 175 (391)
T KOG2110|consen 97 RKRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGP 175 (391)
T ss_pred cceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCc
Q ss_pred ccCCceeccccccccCCCeEEEEe---CCEEEEEECCCCcEEEEEeccCcceeeeeEEEEecCCEEEEEEecCCceeEEE
Q 003792 129 HSKPLLLVPTNLKVDKDSLILVSS---KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAY 205 (795)
Q Consensus 129 ~s~~~~~~~~~~~~~~~~~V~V~~---~g~l~ald~~tG~~~W~~~~~~~~~~~~~vv~s~~~~~Vyvv~~~g~~~~~v~ 205 (795)
+ ..+.+-+ +|..+... +..++.+...+|+.+.+++...-....+++..+.+..-+-+.+..+ .|.
T Consensus 176 l-Aalafs~-------~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~Te----TVH 243 (391)
T KOG2110|consen 176 L-AALAFSP-------DGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTE----TVH 243 (391)
T ss_pred e-eEEEECC-------CCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCC----eEE
Q ss_pred EEEcCC
Q 003792 206 QINAMN 211 (795)
Q Consensus 206 ald~~t 211 (795)
.+-+.+
T Consensus 244 iFKL~~ 249 (391)
T KOG2110|consen 244 IFKLEK 249 (391)
T ss_pred EEEecc
No 245
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=21.30 E-value=3e+02 Score=32.69 Aligned_cols=70 Identities=11% Similarity=0.182 Sum_probs=43.4
Q ss_pred CCEEEEEeCCCEEEEEECcCCccceEEEcCCcceeeeeeeeeCCEEEEEEccCCeEEEEeCCCCcEeEEEeccCccc
Q 003792 53 RKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKH 129 (795)
Q Consensus 53 ~~~v~vat~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~~~~~~~ 129 (795)
.+.++++|++| |+.+|+.+|+++=+-..+....|..+....++. +.|+++. -+.-.+++. |++.-....+
T Consensus 175 ~g~lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~al~~d~qg~-LWVGTdq-Gv~~~e~~G----~~~sn~~~~l 244 (671)
T COG3292 175 NGRLWVGTPDG-LSYFDAGRGKALQLASPPLDKAINALIADVQGR-LWVGTDQ-GVYLQEAEG----WRASNWGPML 244 (671)
T ss_pred cCcEEEecCCc-ceEEccccceEEEcCCCcchhhHHHHHHHhcCc-EEEEecc-ceEEEchhh----ccccccCCCC
Confidence 66799999999 788999999987554444433344331123333 4446653 366666654 7776655443
No 246
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.08 E-value=1.7e+02 Score=34.11 Aligned_cols=146 Identities=11% Similarity=0.127 Sum_probs=72.4
Q ss_pred EEEccCCeEEEEeCCCCcEeEEEeccCcccc-CCceeccccccccCCCeEEEE-e-CCEEEEEECCCCcEEEEEec---c
Q 003792 100 TLSSDGSTLRAWNLPDGQMVWESFLRGSKHS-KPLLLVPTNLKVDKDSLILVS-S-KGCLHAVSSIDGEILWTRDF---A 173 (795)
Q Consensus 100 ~Vs~~g~~v~A~d~~tG~llWe~~~~~~~~s-~~~~~~~~~~~~~~~~~V~V~-~-~g~l~ald~~tG~~~W~~~~---~ 173 (795)
+++- ++.+..||+--|+++=+..-..-..+ .....++ .++ ...++.. + ..+|..+|+.+++-.-+++. +
T Consensus 799 i~Sc-D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~---nv~-~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~ 873 (1034)
T KOG4190|consen 799 IASC-DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLE---NVD-RHILIAGCSAESTVKLFDARSCEWTCELKVCNAP 873 (1034)
T ss_pred eeec-cCcceeecccccchhHhhhcCcccCCCceeEecc---cCc-chheeeeccchhhheeeecccccceeeEEeccCC
Confidence 3344 45799999999987754332211100 1111222 111 2233333 2 67899999999875533333 2
Q ss_pred CcceeeeeEEEEecCCEEEEEEecCCceeEEEEEEcCCCceeeeeeeeccCCcccceEEecCcEEEEEECCCCeEEEEEe
Q 003792 174 AESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAFSGGFVGDVALVSSDTLVTLDTTRSILVTVSF 253 (795)
Q Consensus 174 ~~~~~~~~vv~s~~~~~Vyvv~~~g~~~~~v~ald~~tG~~~w~~~v~~~~~~~~~~~~vg~~~lv~~d~~~~~L~v~~l 253 (795)
.|+- ..+++.....|.-.++++..| .+..||+.||+++..++- ...++-. ..-.++..++-. ..+.++.++|.
T Consensus 874 ~Pna-~~R~iaVa~~GN~lAa~LSnG---ci~~LDaR~G~vINswrp-mecdllq-laapsdq~L~~s-aldHslaVnWh 946 (1034)
T KOG4190|consen 874 GPNA-LTRAIAVADKGNKLAAALSNG---CIAILDARNGKVINSWRP-MECDLLQ-LAAPSDQALAQS-ALDHSLAVNWH 946 (1034)
T ss_pred CCch-heeEEEeccCcchhhHHhcCC---cEEEEecCCCceeccCCc-ccchhhh-hcCchhHHHHhh-cccceeEeeeh
Confidence 2322 122322222333333344433 799999999999976641 1111100 000122223222 23467889998
Q ss_pred ecCe
Q 003792 254 KNRK 257 (795)
Q Consensus 254 ~sg~ 257 (795)
....
T Consensus 947 aldg 950 (1034)
T KOG4190|consen 947 ALDG 950 (1034)
T ss_pred hcCC
Confidence 7644
No 247
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.84 E-value=1.4e+03 Score=27.18 Aligned_cols=115 Identities=12% Similarity=0.139 Sum_probs=65.4
Q ss_pred CCEEEEEEc-cCCeEEEEeCCCCcEeEEEeccCccccCCceeccc--cccccCCCeEEEEeCCEEEEEECC-CC--cEEE
Q 003792 95 GKYVITLSS-DGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPT--NLKVDKDSLILVSSKGCLHAVSSI-DG--EILW 168 (795)
Q Consensus 95 g~~~V~Vs~-~g~~v~A~d~~tG~llWe~~~~~~~~s~~~~~~~~--~~~~~~~~~V~V~~~g~l~ald~~-tG--~~~W 168 (795)
...+++.++ ....|+-+|.+.|+++=||.+..-.- ...+-+. .........++-+++..|.++|+. .| +..|
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~di~--mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~ 421 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDDIN--MVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAV 421 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCCcc--eeeccCCcchhcccccccEEeecCCceEEecccccCcceeee
Confidence 445777755 34679999999999987777654310 0001110 001111344555689999999974 23 3457
Q ss_pred EEeccCcceeeeeEEEEecCCEEEEEEecCCceeEEEEEEcCCCceee
Q 003792 169 TRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLN 216 (795)
Q Consensus 169 ~~~~~~~~~~~~~vv~s~~~~~Vyvv~~~g~~~~~v~ald~~tG~~~w 216 (795)
.....-..-.-.+|...+.+|.|.|.+..| .+.-+|. .|....
T Consensus 422 ~q~kqy~~k~nFsc~aTT~sG~IvvgS~~G----dIRLYdr-i~~~AK 464 (644)
T KOG2395|consen 422 VQSKQYSTKNNFSCFATTESGYIVVGSLKG----DIRLYDR-IGRRAK 464 (644)
T ss_pred eeccccccccccceeeecCCceEEEeecCC----cEEeehh-hhhhhh
Confidence 654443222234665556777888777776 3444454 555443
No 248
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=20.64 E-value=1.4e+03 Score=26.73 Aligned_cols=233 Identities=12% Similarity=0.103 Sum_probs=105.5
Q ss_pred eeeCCEEEEEEcc-C-CeEEEEeCCCCcEeEEEeccCccccCCceeccccccccCCCeEEEE-eCCEEEEEECCCCcEE-
Q 003792 92 IALGKYVITLSSD-G-STLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVS-SKGCLHAVSSIDGEIL- 167 (795)
Q Consensus 92 ~~~g~~~V~Vs~~-g-~~v~A~d~~tG~llWe~~~~~~~~s~~~~~~~~~~~~~~~~~V~V~-~~g~l~ald~~tG~~~- 167 (795)
+.+++.+.+++.. | |+++.-|..--.++-.+....--. . ....++.-+|+ .+|.++.+|+++-++.
T Consensus 232 mIV~~RvYFlsD~eG~GnlYSvdldGkDlrrHTnFtdYY~-R---------~~nsDGkrIvFq~~GdIylydP~td~lek 301 (668)
T COG4946 232 MIVGERVYFLSDHEGVGNLYSVDLDGKDLRRHTNFTDYYP-R---------NANSDGKRIVFQNAGDIYLYDPETDSLEK 301 (668)
T ss_pred eEEcceEEEEecccCccceEEeccCCchhhhcCCchhccc-c---------ccCCCCcEEEEecCCcEEEeCCCcCccee
Confidence 3467888888863 3 689999874333544444443221 1 11124444444 6889999999886643
Q ss_pred EEEeccCcce-eeeeEE-E-------EecCCEEEEEEecCCceeEEEEEEcCCCceeeeeeeeccCCcccceEEecCcEE
Q 003792 168 WTRDFAAESV-EVQQVI-Q-------LDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAFSGGFVGDVALVSSDTL 238 (795)
Q Consensus 168 W~~~~~~~~~-~~~~vv-~-------s~~~~~Vyvv~~~g~~~~~v~ald~~tG~~~w~~~v~~~~~~~~~~~~vg~~~l 238 (795)
=...+|-... ...+.+ + +..+|..++.-.-| +...+++-.|-.+ ++..+.++-=....+..+-+
T Consensus 302 ldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSRG----kaFi~~~~~~~~i---qv~~~~~VrY~r~~~~~e~~ 374 (668)
T COG4946 302 LDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSRG----KAFIMRPWDGYSI---QVGKKGGVRYRRIQVDPEGD 374 (668)
T ss_pred eecCCccccccccccccCHHHhhhhhccCCCcEEEEEecC----cEEEECCCCCeeE---EcCCCCceEEEEEccCCcce
Confidence 2222221100 000000 0 11233333222222 3444443333222 11111111111111222233
Q ss_pred EEEECCCCeEEEEEeecCeeeeEEEeecccCCCCCCceEEeecCCcceeEEEecCcEEEEEEe-cCCcEEEEEeecCcce
Q 003792 239 VTLDTTRSILVTVSFKNRKIAFQETHLSNLGEDSSGMVEILPSSLTGMFTVKINNYKLFIRLT-SEDKLEVVHKVDHETV 317 (795)
Q Consensus 239 v~~d~~~~~L~v~~l~sg~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~v~~~~~~~~~ 317 (795)
+..+.+...|-+.+.+++. ++.+- ++.+.++.....++|-+++-.+++..|.-++ ++|.+.+.+.-. ...
T Consensus 375 vigt~dgD~l~iyd~~~~e--~kr~e------~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~-~~l 445 (668)
T COG4946 375 VIGTNDGDKLGIYDKDGGE--VKRIE------KDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSE-YGL 445 (668)
T ss_pred EEeccCCceEEEEecCCce--EEEee------CCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccc-cce
Confidence 4444455588888888876 44332 1223344444445666666666655444444 477776665433 222
Q ss_pred eee-eeeecCCceEEEEEEecCceEEEEEeeeeeeecCcc
Q 003792 318 VSD-ALVFSEGKEAFAVVEHGGSKVDITVKPGQDWNNNLV 356 (795)
Q Consensus 318 ~s~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 356 (795)
+.. .. .....-+|...|++ |. ..++.+++.+.+
T Consensus 446 Itdf~~--~~nsr~iAYafP~g---y~-tq~Iklydm~~~ 479 (668)
T COG4946 446 ITDFDW--HPNSRWIAYAFPEG---YY-TQSIKLYDMDGG 479 (668)
T ss_pred eEEEEE--cCCceeEEEecCcc---ee-eeeEEEEecCCC
Confidence 221 22 33444455444543 11 234555555543
No 249
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=20.61 E-value=6.1e+02 Score=23.52 Aligned_cols=68 Identities=15% Similarity=0.203 Sum_probs=47.3
Q ss_pred CCEEEEEEccCCeEEEEeCCCCcEeEEEeccCccccCCceeccccccccCCCeEEEEeCCEEEEEECCCCcEEEEEeccC
Q 003792 95 GKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSSKGCLHAVSSIDGEILWTRDFAA 174 (795)
Q Consensus 95 g~~~V~Vs~~g~~v~A~d~~tG~llWe~~~~~~~~s~~~~~~~~~~~~~~~~~V~V~~~g~l~ald~~tG~~~W~~~~~~ 174 (795)
|++-++|++++..+|.|+- ..+++|........ .+.. .......+.+.+|++-.++. ...+|+.+...
T Consensus 14 g~~eLlvGs~D~~IRvf~~--~e~~~Ei~e~~~v~----~L~~----~~~~~F~Y~l~NGTVGvY~~--~~RlWRiKSK~ 81 (111)
T PF14783_consen 14 GENELLVGSDDFEIRVFKG--DEIVAEITETDKVT----SLCS----LGGGRFAYALANGTVGVYDR--SQRLWRIKSKN 81 (111)
T ss_pred CcceEEEecCCcEEEEEeC--CcEEEEEecccceE----EEEE----cCCCEEEEEecCCEEEEEeC--cceeeeeccCC
Confidence 4466777888899999985 58999998776543 2222 12134455567999999975 56889987654
No 250
>PF08894 DUF1838: Protein of unknown function (DUF1838); InterPro: IPR014990 This group of proteins are functionally uncharacterised.
Probab=20.48 E-value=72 Score=33.37 Aligned_cols=67 Identities=24% Similarity=0.198 Sum_probs=41.2
Q ss_pred eEeeccCCceEEEEEEcCCCCCCCCCCCCCCcEEEEEEEEceeeeEEEEEEeCCCCCCceEEEEecEEEE
Q 003792 700 VMYKYISKNLLFVATVAPKASGHIGSADPDEAWLVVYLIDTITGRILHRMTHHGAQGPVHAVLSENWVVY 769 (795)
Q Consensus 700 VLYKYLNPNL~~v~t~~~~~~~~~g~~~~~~~~l~vyLiD~VTG~il~s~~h~~~~~pv~~v~~ENWvvY 769 (795)
.|+|-.-=|..-.+.....+.+. | -.--...|++|+ |.+||+||++-.-+-....|.+||..|=.|=
T Consensus 24 ~LF~ieGmnv~rcv~~~~g~~~~-~-~r~lSREl~~Y~-DP~TgeIL~~W~npwt~e~vpVvhVaNdpv~ 90 (238)
T PF08894_consen 24 LLFKIEGMNVARCVPDEDGEGGE-G-YRFLSRELTFYL-DPVTGEILETWENPWTGEVVPVVHVANDPVN 90 (238)
T ss_pred eeeeeeeeeeeEeeecCCCcchh-h-hhhhhheeeEEe-CCchhhHHHhhcCCCcCCccceEEeccCccc
Confidence 35555555655555554332110 0 000124577777 9999999999888877777888887654443
No 251
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=20.13 E-value=1.4e+03 Score=26.58 Aligned_cols=98 Identities=21% Similarity=0.223 Sum_probs=53.9
Q ss_pred CCEEEEEECCCCcEE-EEEeccCcce------eeeeEEEEecCCEEEEEEecCCceeEEEEEEcCCCceeeeeeeeccCC
Q 003792 153 KGCLHAVSSIDGEIL-WTRDFAAESV------EVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAFSGG 225 (795)
Q Consensus 153 ~g~l~ald~~tG~~~-W~~~~~~~~~------~~~~vv~s~~~~~Vyvv~~~g~~~~~v~ald~~tG~~~w~~~v~~~~~ 225 (795)
+|.+.|.-..+|..+ |...-..... ....+-....++.+...+.++ ..+..|..+|+..-+..+.....
T Consensus 246 ~G~~LatG~~~G~~riw~~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~----ttilwd~~~g~~~q~f~~~s~~~ 321 (524)
T KOG0273|consen 246 DGTLLATGSEDGEARIWNKDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDG----TTILWDAHTGTVKQQFEFHSAPA 321 (524)
T ss_pred CCCeEEEeecCcEEEEEecCchhhhhhhccCCceEEEEEcCCCCEEEeccCCc----cEEEEeccCceEEEeeeeccCCc
Confidence 566666666666643 6543211000 011222122344444444444 67888999999887776544322
Q ss_pred cccceEEecCcEEEEEECCCCeEEEEEeecCe
Q 003792 226 FVGDVALVSSDTLVTLDTTRSILVTVSFKNRK 257 (795)
Q Consensus 226 ~~~~~~~vg~~~lv~~d~~~~~L~v~~l~sg~ 257 (795)
+ .+.-.++..+++.+. .+.+++.-+.-..
T Consensus 322 l--DVdW~~~~~F~ts~t-d~~i~V~kv~~~~ 350 (524)
T KOG0273|consen 322 L--DVDWQSNDEFATSST-DGCIHVCKVGEDR 350 (524)
T ss_pred c--ceEEecCceEeecCC-CceEEEEEecCCC
Confidence 2 233346667777765 4788888877554
No 252
>PF14339 DUF4394: Domain of unknown function (DUF4394)
Probab=20.07 E-value=1e+03 Score=25.06 Aligned_cols=114 Identities=18% Similarity=0.175 Sum_probs=57.1
Q ss_pred CEEEEEEccCCeEEEEeCCCCcEeEE--EeccCccccCCceeccccccccCCCeEEEEeCCEEEEEECCCCcEEEEEecc
Q 003792 96 KYVITLSSDGSTLRAWNLPDGQMVWE--SFLRGSKHSKPLLLVPTNLKVDKDSLILVSSKGCLHAVSSIDGEILWTRDFA 173 (795)
Q Consensus 96 ~~~V~Vs~~g~~v~A~d~~tG~llWe--~~~~~~~~s~~~~~~~~~~~~~~~~~V~V~~~g~l~ald~~tG~~~W~~~~~ 173 (795)
+.++-++.. ++++-+|+.+|..-.. ..+.. .+... ..+.+.-+..++.=+|...|+-.++++.+|.+.=.-
T Consensus 39 G~LYgl~~~-g~lYtIn~~tG~aT~vg~s~~~~-al~g~--~~gvDFNP~aDRlRvvs~~GqNlR~npdtGav~~~D--- 111 (236)
T PF14339_consen 39 GQLYGLGST-GRLYTINPATGAATPVGASPLTV-ALSGT--AFGVDFNPAADRLRVVSNTGQNLRLNPDTGAVTIVD--- 111 (236)
T ss_pred CCEEEEeCC-CcEEEEECCCCeEEEeecccccc-cccCc--eEEEecCcccCcEEEEccCCcEEEECCCCCCceecc---
Confidence 344555554 5899999999996555 22221 11111 111111222233334447999999999999833111
Q ss_pred Ccceeee--eEEEEecCCEEEEEEe----cCCc-eeEEEEEEcCCCceeeee
Q 003792 174 AESVEVQ--QVIQLDESDQIYVVGY----AGSS-QFHAYQINAMNGELLNHE 218 (795)
Q Consensus 174 ~~~~~~~--~vv~s~~~~~Vyvv~~----~g~~-~~~v~ald~~tG~~~w~~ 218 (795)
+.+.+. .+- ....-.|....+ .|.. ...++.+|..++.++-|.
T Consensus 112 -g~L~y~~gd~~-~G~~p~v~aaAYTNs~~g~~t~TtLy~ID~~~~~Lv~Q~ 161 (236)
T PF14339_consen 112 -GNLAYAAGDMN-AGTTPGVTAAAYTNSFAGATTSTTLYDIDTTLDALVTQN 161 (236)
T ss_pred -CccccCCCccc-cCCCCceEEEEEecccCCCccceEEEEEecCCCeEEEec
Confidence 111000 000 000112222222 3323 467899999888887774
Done!