BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003793
(795 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3SNP|A Chain A, Crystal Structure Analysis Of Iron Regulatory Protein 1 In
Complex With Ferritin H Ire Rna
pdb|3SNP|B Chain B, Crystal Structure Analysis Of Iron Regulatory Protein 1 In
Complex With Ferritin H Ire Rna
pdb|3SN2|A Chain A, Crystal Structure Analysis Of Iron Regulatory Protein 1 In
Complex With Transferrin Receptor Ire B Rna
Length = 908
Score = 1009 bits (2609), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 481/794 (60%), Positives = 597/794 (75%), Gaps = 4/794 (0%)
Query: 1 MRDAMKNLNSDPKKINPLVPVDLVVDHSVQVDVARSENAVQANMEFEFQRNQERFAFLKW 60
MRDA+K L DP+KINP+ PVDLV+DHS+QVD R +++Q N + EF+RN+ERF FLKW
Sbjct: 119 MRDAVKKLGGDPEKINPICPVDLVIDHSIQVDFNRRADSLQKNQDLEFERNRERFEFLKW 178
Query: 61 GSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTDGILYPDSVVGTDSHTTMIDXXXXXXX 120
GS AF NM ++PPGSGI+HQVNLEYL RVVF+ DG YPDS+VGTDSHTTMID
Sbjct: 179 GSKAFRNMRIIPPGSGIIHQVNLEYLARVVFDQDGYYYPDSLVGTDSHTTMIDGLGVLGW 238
Query: 121 XXXXXXXXXXMLGQPMSMVLPGVVGFKLTGKLRDGVTATDLVLTVTQMLRKHGVVGKFVE 180
MLGQP+SMVLP V+G++L GK VT+TD+VLT+T+ LR+ GVVGKFVE
Sbjct: 239 GVGGIEAEAVMLGQPISMVLPQVIGYRLMGKPHPLVTSTDIVLTITKHLRQVGVVGKFVE 298
Query: 181 FYGEGMGQLPLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVSMIEEYLRA 240
F+G G+ QL +ADRATIANM PEYGAT FFPVD V+++YL TGR + V I +YL+A
Sbjct: 299 FFGPGVAQLSIADRATIANMCPEYGATATFFPVDEVSIKYLVQTGRDESKVKQIRKYLQA 358
Query: 241 NKMFVDYNEPEQERSYSSYLQLDLADVEPCISGPKRPHDRVPLKDMKADWHACLENQVGF 300
MF DY++P Q+ ++ ++LDL V PC SGPKRP D+V + DMK D+ +CL + GF
Sbjct: 359 VGMFRDYSDPSQDPDFTQVVELDLKTVVPCCSGPKRPQDKVAVSDMKKDFESCLGAKQGF 418
Query: 301 KGFAVPKQEQDKVAKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACEL 360
KGF V + F ++ L HGSVVIAAITS TNTSNPSVMLGAGL+AKKA +
Sbjct: 419 KGFQVAPDHHNDHKTFIYNDSEFTLSHGSVVIAAITSSTNTSNPSVMLGAGLLAKKAVDA 478
Query: 361 GLEVKPWVKTSLAPGSGVVTKYLQQSGLQKYLNQQGFHIVGYGCTTCIGNSGDLDESVAT 420
GL VKP+VKTSL+PGSGVVT YL++SG+ YL+Q GF +VGYG TCIGNSG L E V
Sbjct: 479 GLNVKPYVKTSLSPGSGVVTYYLRESGVMPYLSQLGFDVVGYGSMTCIGNSGPLPEPVVE 538
Query: 421 AITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVDIDFEKEPIGTGK 480
AIT+ D+VA VLSGNRNFEGRVHP TRANYLASPPLV+AYA+AGT+ IDFEKEP+GT
Sbjct: 539 AITQGDLVAVGVLSGNRNFEGRVHPNTRANYLASPPLVIAYAIAGTIRIDFEKEPLGTNA 598
Query: 481 DGKGVYFKDIWPSNEEIAEVVQSSVLPDMFKSTYEAITKGNPMWNQLSVPTSTLYSWDPN 540
G+ V+ +DIWP+ EEI V + V+P MF Y+ I N WN L+ P+ LY W+P
Sbjct: 599 KGQQVFLRDIWPTREEIQAVERQYVIPGMFTEVYQKIETVNASWNALAAPSDKLYLWNPK 658
Query: 541 STYIHEPPYFKNMTMEPPGPHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLLER 600
STYI PP+F+N+T++ P + DAY LLN GDS+TTDHISPAG+I ++SPAA+YL R
Sbjct: 659 STYIKSPPFFENLTLDLQPPKSIVDAYVLLNLGDSVTTDHISPAGNIARNSPAARYLTNR 718
Query: 601 GVDRKDFNSYGSRRGNDEVMARGTFANIRIVNKLLNGEVGPKTVHIPTGEKLYVFDAAMR 660
G+ ++FNSYGSRRGND +MARGTFANIR++N+ LN + P+T+H+P+GE L VFDAA R
Sbjct: 719 GLTPREFNSYGSRRGNDAIMARGTFANIRLLNRFLNKQ-APQTIHLPSGETLDVFDAAER 777
Query: 661 YKAAGHETIVLAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCF 720
Y+ GH IVLAG EYGSGSSRDWAAKGP LLG+KAV+A+S+ERIHRSNLVGMG+IPL +
Sbjct: 778 YQQEGHPLIVLAGKEYGSGSSRDWAAKGPFLLGIKAVLAESYERIHRSNLVGMGVIPLEY 837
Query: 721 KPGEDADTLGLAGHERYTINLPNKVSEIRPGQDITVTTDTGKSFTCTVRFDTEVELAYFD 780
PGE+AD+LGL G ERYTI +P ++ P + V DTGK+F +RFDT+VEL YF
Sbjct: 838 LPGENADSLGLTGRERYTIIIPENLT---PRMHVQVKLDTGKTFQAVIRFDTDVELTYFH 894
Query: 781 HGGILPYVIRNLIK 794
+GGIL Y+IR + K
Sbjct: 895 NGGILNYMIRKMAK 908
>pdb|2B3X|A Chain A, Structure Of An Orthorhombic Crystal Form Of Human
Cytosolic Aconitase (Irp1)
pdb|2B3Y|A Chain A, Structure Of A Monoclinic Crystal Form Of Human Cytosolic
Aconitase (Irp1)
pdb|2B3Y|B Chain B, Structure Of A Monoclinic Crystal Form Of Human Cytosolic
Aconitase (Irp1)
Length = 888
Score = 1007 bits (2603), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 480/794 (60%), Positives = 597/794 (75%), Gaps = 4/794 (0%)
Query: 1 MRDAMKNLNSDPKKINPLVPVDLVVDHSVQVDVARSENAVQANMEFEFQRNQERFAFLKW 60
MRDA+K L DP+KINP+ P DLV+DHS+QVD R +++Q N + EF+RN+ERF FLKW
Sbjct: 99 MRDAVKKLGGDPEKINPVCPADLVIDHSIQVDFNRRADSLQKNQDLEFERNRERFEFLKW 158
Query: 61 GSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTDGILYPDSVVGTDSHTTMIDXXXXXXX 120
GS AFHNM ++PPGSGI+HQVNLEYL RVVF+ DG YPDS+VGTDSHTTMID
Sbjct: 159 GSQAFHNMRIIPPGSGIIHQVNLEYLARVVFDQDGYYYPDSLVGTDSHTTMIDGLGILGW 218
Query: 121 XXXXXXXXXXMLGQPMSMVLPGVVGFKLTGKLRDGVTATDLVLTVTQMLRKHGVVGKFVE 180
MLGQP+SMVLP V+G++L GK VT+TD+VLT+T+ LR+ GVVGKFVE
Sbjct: 219 GVGGIEAEAVMLGQPISMVLPQVIGYRLMGKPHPLVTSTDIVLTITKHLRQVGVVGKFVE 278
Query: 181 FYGEGMGQLPLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVSMIEEYLRA 240
F+G G+ QL +ADRATIANM PEYGAT FFPVD V++ YL TGR +E + I++YL+A
Sbjct: 279 FFGPGVAQLSIADRATIANMCPEYGATAAFFPVDEVSITYLVQTGRDEEKLKYIKKYLQA 338
Query: 241 NKMFVDYNEPEQERSYSSYLQLDLADVEPCISGPKRPHDRVPLKDMKADWHACLENQVGF 300
MF D+N+P Q+ ++ ++LDL V PC SGPKRP D+V + DMK D+ +CL + GF
Sbjct: 339 VGMFRDFNDPSQDPDFTQVVELDLKTVVPCCSGPKRPQDKVAVSDMKKDFESCLGAKQGF 398
Query: 301 KGFAVPKQEQDKVAKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACEL 360
KGF V + + F + L HGSVVIAAITSCTNTSNPSVMLGAGL+AKKA +
Sbjct: 399 KGFQVAPEHHNDHKTFIYDNTEFTLAHGSVVIAAITSCTNTSNPSVMLGAGLLAKKAVDA 458
Query: 361 GLEVKPWVKTSLAPGSGVVTKYLQQSGLQKYLNQQGFHIVGYGCTTCIGNSGDLDESVAT 420
GL V P++KTSL+PGSGVVT YLQ+SG+ YL+Q GF +VGYGC TCIGNSG L E V
Sbjct: 459 GLNVMPYIKTSLSPGSGVVTYYLQESGVMPYLSQLGFDVVGYGCMTCIGNSGPLPEPVVE 518
Query: 421 AITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVDIDFEKEPIGTGK 480
AIT+ D+VA VLSGNRNFEGRVHP TRANYLASPPLV+AYA+AGT+ IDFEKEP+G
Sbjct: 519 AITQGDLVAVGVLSGNRNFEGRVHPNTRANYLASPPLVIAYAIAGTIRIDFEKEPLGVNA 578
Query: 481 DGKGVYFKDIWPSNEEIAEVVQSSVLPDMFKSTYEAITKGNPMWNQLSVPTSTLYSWDPN 540
G+ V+ KDIWP+ +EI V + V+P MFK Y+ I N WN L+ P+ L+ W+
Sbjct: 579 KGQQVFLKDIWPTRDEIQAVERQYVIPGMFKEVYQKIETVNESWNALATPSDKLFFWNSK 638
Query: 541 STYIHEPPYFKNMTMEPPGPHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLLER 600
STYI PP+F+N+T++ P + DAY LLN GDS+TTDHISPAG+I ++SPAA+YL R
Sbjct: 639 STYIKSPPFFENLTLDLQPPKSIVDAYVLLNLGDSVTTDHISPAGNIARNSPAARYLTNR 698
Query: 601 GVDRKDFNSYGSRRGNDEVMARGTFANIRIVNKLLNGEVGPKTVHIPTGEKLYVFDAAMR 660
G+ ++FNSYGSRRGND VMARGTFANIR++N+ LN + P+T+H+P+GE L VFDAA R
Sbjct: 699 GLTPREFNSYGSRRGNDAVMARGTFANIRLLNRFLNKQ-APQTIHLPSGEILDVFDAAER 757
Query: 661 YKAAGHETIVLAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCF 720
Y+ AG IVLAG EYG+GSSRDWAAKGP LLG+KAV+A+S+ERIHRSNLVGMG+IPL +
Sbjct: 758 YQQAGLPLIVLAGKEYGAGSSRDWAAKGPFLLGIKAVLAESYERIHRSNLVGMGVIPLEY 817
Query: 721 KPGEDADTLGLAGHERYTINLPNKVSEIRPGQDITVTTDTGKSFTCTVRFDTEVELAYFD 780
PGE+AD LGL G ERYTI +P ++P + V DTGK+F +RFDT+VEL YF
Sbjct: 818 LPGENADALGLTGQERYTIIIP---ENLKPQMKVQVKLDTGKTFQAVMRFDTDVELTYFL 874
Query: 781 HGGILPYVIRNLIK 794
+GGIL Y+IR + K
Sbjct: 875 NGGILNYMIRKMAK 888
>pdb|1ACO|A Chain A, Crystal Structure Of Aconitase With Transaconitate Bound
pdb|1FGH|A Chain A, Complex With 4-Hydroxy-Trans-Aconitate
pdb|8ACN|A Chain A, Crystal Structures Of Aconitase With Isocitrate And
Nitroisocitrate Bound
Length = 754
Score = 197 bits (500), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 216/777 (27%), Positives = 326/777 (41%), Gaps = 134/777 (17%)
Query: 19 VPVDLVVDHSVQVDVARSENAVQANMEFEFQRNQERFAFLKWGSSAFHNMLVVPPGSGIV 78
VP + DH ++ + ++ +A NQE + FL + A + + PGSGI+
Sbjct: 93 VPSTIHCDHLIEAQLGGEKDLRRAK-----DINQEVYNFLA-TAGAKYGVGFWRPGSGII 146
Query: 79 HQVNLEYLGRVVFNTDGILYPDSVVGTDSHTTMIDXXXXXXXXXXXXXXXXXMLGQPMSM 138
HQ+ LE + G+L ++GTDSHT M G P +
Sbjct: 147 HQIILEN-----YAYPGVL----LIGTDSHTPNGGGLGGICIGVGGADAVDVMAGIPWEL 197
Query: 139 VLPGVVGFKLTGKLRDGVTATDLVLTVTQMLRKHGVVGKFVEFYGEGMGQLPLADRATIA 198
P V+G KLTG L + D++L V +L G G VE++G G+ + ATI
Sbjct: 198 KCPKVIGVKLTGSLSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPGVDSISCTGMATIC 257
Query: 199 NMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVSMIEEYLRANKMFVDYNEPEQERSYSS 258
NM E GAT FP +H +YL TGR+D ++ +E F D+ P+ Y
Sbjct: 258 NMGAEIGATTSVFPYNHRMKKYLSKTGRAD-IANLADE-------FKDHLVPDSGCHYDQ 309
Query: 259 YLQLDLADVEPCISGPKRPHDRVPLKDMKADWHACLENQVGFKGFAVPKQEQDKVAKFSF 318
++++L++++P I+GP P A P E VA+
Sbjct: 310 LIEINLSELKPHINGPFTPD------------------------LAHPVAEVGSVAEKE- 344
Query: 319 HGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLEVKPWVKTSLAPGSGV 378
G P +++ + I SCTN+S + A VAK+A GL+ K + ++ PGS
Sbjct: 345 -GWPLDIR-----VGLIGSCTNSSYEDMGRSAA-VAKQALAHGLKCKS--QFTITPGSEQ 395
Query: 379 VTKYLQQSGLQKYLNQQGFHIVGYGCTTCIGNSGDLDESVATAITENDIVAAAVLSGNRN 438
+ +++ G + L G ++ C CIG D +N IV S NRN
Sbjct: 396 IRATIERDGYAQVLRDVGGIVLANACGPCIGQ---WDRKDIKKGEKNTIVT----SYNRN 448
Query: 439 FEGR--VHPLTRANYLASPPLVVAYALAGTVDIDFEKEPIGTGKDGKGVYFKDIWPSNEE 496
F GR +P T A ++ SP +V A A+AGT+ + E + + TGKDGK FK P +E
Sbjct: 449 FTGRNDANPETHA-FVTSPEIVTALAIAGTLKFNPETDFL-TGKDGK--KFKLEAPDADE 504
Query: 497 I--AEVVQSSVLPDMFKSTYEAITKGNPMWNQLSVPTSTLYSWDPNSTYIHEPPYFKNMT 554
+ AE D + TY+ K + PTS + EP
Sbjct: 505 LPRAEF-------DPGQDTYQHPPKDSSGQRVDVSPTS-------QRLQLLEP------- 543
Query: 555 MEPPGPHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLLERGVDRKDFNSYGSRR 614
+ ++D L+ TTDHIS AG K F +
Sbjct: 544 FDKWDGKDLEDLQILIKVKGKCTTDHISAAGPWLK-----------------FRGHLDNI 586
Query: 615 GNDEVMARGTFANIRIVNKLLNG---EVGPKTVHIPTGEKLYVFDAAMRYKAAGHETIVL 671
N+ ++ N R N + N E GP V D A YK G +V+
Sbjct: 587 SNNLLIGAINSEN-RKANSVRNAVTQEFGP------------VPDTARYYKQHGIRWVVI 633
Query: 672 AGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDADTLGL 731
YG GSSR+ +A P LG +A+I KSF RIH +NL G++PL F + AD +
Sbjct: 634 GDENYGEGSSREHSALEPRFLGGRAIITKSFARIHETNLKKQGLLPLTF--ADPADYNKI 691
Query: 732 AGHERYTINLPNKVSEIRPGQDITVTTDTGKSFTCTVRFD---TEVELAYFDHGGIL 785
++ TI + + PG+ +T T+ + E ++ +F G L
Sbjct: 692 HPVDKLTI---QGLKDFAPGKPLTCIIKHPNGTQETILLNHTFNETQIEWFRAGSAL 745
>pdb|1AMI|A Chain A, Steric And Conformational Features Of The Aconitase
Mechanism
pdb|1AMJ|A Chain A, Steric And Conformational Features Of The Aconitase
Mechanism
Length = 754
Score = 197 bits (500), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 216/777 (27%), Positives = 326/777 (41%), Gaps = 134/777 (17%)
Query: 19 VPVDLVVDHSVQVDVARSENAVQANMEFEFQRNQERFAFLKWGSSAFHNMLVVPPGSGIV 78
VP + DH ++ + ++ +A NQE + FL + A + + PGSGI+
Sbjct: 93 VPSTIHCDHLIEAQLGGEKDLRRAK-----DINQEVYNFLA-TAGAKYGVGFWRPGSGII 146
Query: 79 HQVNLEYLGRVVFNTDGILYPDSVVGTDSHTTMIDXXXXXXXXXXXXXXXXXMLGQPMSM 138
HQ+ LE + G+L ++GTDSHT M G P +
Sbjct: 147 HQIILEN-----YAYPGVL----LIGTDSHTPNGGGLGGICIGVGGADAVDVMAGIPWEL 197
Query: 139 VLPGVVGFKLTGKLRDGVTATDLVLTVTQMLRKHGVVGKFVEFYGEGMGQLPLADRATIA 198
P V+G KLTG L + D++L V +L G G VE++G G+ + ATI
Sbjct: 198 KCPKVIGVKLTGSLSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPGVDSISCTGMATIC 257
Query: 199 NMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVSMIEEYLRANKMFVDYNEPEQERSYSS 258
NM E GAT FP +H +YL TGR+D ++ +E F D+ P+ Y
Sbjct: 258 NMGAEIGATTSVFPYNHRMKKYLSKTGRAD-IANLADE-------FKDHLVPDSGCHYDQ 309
Query: 259 YLQLDLADVEPCISGPKRPHDRVPLKDMKADWHACLENQVGFKGFAVPKQEQDKVAKFSF 318
++++L++++P I+GP P A P E VA+
Sbjct: 310 LIEINLSELKPHINGPFTPD------------------------LAHPVAEVGSVAEKE- 344
Query: 319 HGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLEVKPWVKTSLAPGSGV 378
G P +++ + I SCTN+S + A VAK+A GL+ K + ++ PGS
Sbjct: 345 -GWPLDIR-----VGLIGSCTNSSYEDMGRSAA-VAKQALAHGLKCKS--QFTITPGSEQ 395
Query: 379 VTKYLQQSGLQKYLNQQGFHIVGYGCTTCIGNSGDLDESVATAITENDIVAAAVLSGNRN 438
+ +++ G + L G ++ C CIG D +N IV S NRN
Sbjct: 396 IRATIERDGYAQVLRDVGGIVLANACGPCIGQ---WDRKDIKKGEKNTIVT----SYNRN 448
Query: 439 FEGR--VHPLTRANYLASPPLVVAYALAGTVDIDFEKEPIGTGKDGKGVYFKDIWPSNEE 496
F GR +P T A ++ SP +V A A+AGT+ + E + + TGKDGK FK P +E
Sbjct: 449 FTGRNDANPETHA-FVTSPEIVTALAIAGTLKFNPETDFL-TGKDGK--KFKLEAPDADE 504
Query: 497 I--AEVVQSSVLPDMFKSTYEAITKGNPMWNQLSVPTSTLYSWDPNSTYIHEPPYFKNMT 554
+ AE D + TY+ K + PTS + EP
Sbjct: 505 LPRAEF-------DPGQDTYQHPPKDSSGQRVDVSPTS-------QRLQLLEP------- 543
Query: 555 MEPPGPHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLLERGVDRKDFNSYGSRR 614
+ ++D L+ TTDHIS AG K F +
Sbjct: 544 FDKWDGKDLEDLQILIKVKGKCTTDHISAAGPWLK-----------------FRGHLDNI 586
Query: 615 GNDEVMARGTFANIRIVNKLLNG---EVGPKTVHIPTGEKLYVFDAAMRYKAAGHETIVL 671
N+ ++ N R N + N E GP V D A YK G +V+
Sbjct: 587 SNNLLIGAINSEN-RKANSVRNAVTQEFGP------------VPDTARYYKQHGIRWVVI 633
Query: 672 AGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDADTLGL 731
YG GSSR+ +A P LG +A+I KSF RIH +NL G++PL F + AD +
Sbjct: 634 GDENYGEGSSREHSALEPRFLGGRAIITKSFARIHETNLKKQGLLPLTF--ADPADYNKI 691
Query: 732 AGHERYTINLPNKVSEIRPGQDITVTTDTGKSFTCTVRFD---TEVELAYFDHGGIL 785
++ TI + + PG+ +T T+ + E ++ +F G L
Sbjct: 692 HPVDKLTI---QGLKDFAPGKPLTCIIKHPNGTQETILLNHTFNETQIEWFRAGSAL 745
>pdb|1NIS|A Chain A, Crystal Structure Of Aconitase With Trans-Aconitate And
Nitrocitrate Bound
pdb|1NIT|A Chain A, Crystal Structure Of Aconitase With Trans-Aconitate And
Nitrocitrate Bound
Length = 754
Score = 196 bits (498), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 216/777 (27%), Positives = 325/777 (41%), Gaps = 134/777 (17%)
Query: 19 VPVDLVVDHSVQVDVARSENAVQANMEFEFQRNQERFAFLKWGSSAFHNMLVVPPGSGIV 78
VP + DH ++ + ++ +A NQE + FL + A + + PGSGI+
Sbjct: 93 VPSTIHCDHLIEAQLGGEKDLRRAK-----DINQEVYNFLA-TAGAKYGVGFWRPGSGII 146
Query: 79 HQVNLEYLGRVVFNTDGILYPDSVVGTDSHTTMIDXXXXXXXXXXXXXXXXXMLGQPMSM 138
HQ+ LE + G+L ++GTDSHT M G P +
Sbjct: 147 HQIILEN-----YAYPGVL----LIGTDSHTPNGGGLGGICIGVGGADAVDVMAGIPWEL 197
Query: 139 VLPGVVGFKLTGKLRDGVTATDLVLTVTQMLRKHGVVGKFVEFYGEGMGQLPLADRATIA 198
P V+G KLTG L + D++L V +L G G VE++G G+ + ATI
Sbjct: 198 KCPKVIGVKLTGSLSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPGVDSISCTGMATIC 257
Query: 199 NMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVSMIEEYLRANKMFVDYNEPEQERSYSS 258
NM E GAT FP +H +YL TGR+D ++ +E F D+ P+ Y
Sbjct: 258 NMGAEIGATTSVFPYNHRMKKYLSKTGRAD-IANLADE-------FKDHLVPDSGCHYDQ 309
Query: 259 YLQLDLADVEPCISGPKRPHDRVPLKDMKADWHACLENQVGFKGFAVPKQEQDKVAKFSF 318
++++L++++P I+GP P A P E VA+
Sbjct: 310 LIEINLSELKPHINGPFTPD------------------------LAHPVAEVGSVAEKE- 344
Query: 319 HGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLEVKPWVKTSLAPGSGV 378
G P +++ + I SCTN+S + A VAK+A GL+ K + ++ PGS
Sbjct: 345 -GWPLDIR-----VGLIGSCTNSSYEDMGRSAA-VAKQALAHGLKCKS--QFTITPGSEQ 395
Query: 379 VTKYLQQSGLQKYLNQQGFHIVGYGCTTCIGNSGDLDESVATAITENDIVAAAVLSGNRN 438
+ +++ G + L G ++ C CIG D +N IV S NRN
Sbjct: 396 IRATIERDGYAQVLRDVGGIVLANACGPCIGQ---WDRKDIKKGEKNTIVT----SYNRN 448
Query: 439 FEGR--VHPLTRANYLASPPLVVAYALAGTVDIDFEKEPIGTGKDGKGVYFKDIWPSNEE 496
F GR +P T A ++ SP +V A A+AGT+ + E + + TGKDGK FK P +E
Sbjct: 449 FTGRNDANPETHA-FVTSPEIVTALAIAGTLKFNPETDFL-TGKDGK--KFKLEAPDADE 504
Query: 497 I--AEVVQSSVLPDMFKSTYEAITKGNPMWNQLSVPTSTLYSWDPNSTYIHEPPYFKNMT 554
+ AE D + TY+ K + PTS + EP
Sbjct: 505 LPRAEF-------DPGQDTYQHPPKDSSGQRVDVSPTS-------QRLQLLEP------- 543
Query: 555 MEPPGPHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLLERGVDRKDFNSYGSRR 614
+ ++D L+ TTDHIS AG K F +
Sbjct: 544 FDKWDGKDLEDLQILIKVKGKCTTDHISAAGPWLK-----------------FRGHLDNI 586
Query: 615 GNDEVMARGTFANIRIVNKLLNG---EVGPKTVHIPTGEKLYVFDAAMRYKAAGHETIVL 671
N+ ++ N R N + N E GP V D A YK G +V+
Sbjct: 587 SNNLLIGAINSEN-RKANSVRNAVTQEFGP------------VPDTARYYKQHGIRWVVI 633
Query: 672 AGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDADTLGL 731
YG GSSR+ A P LG +A+I KSF RIH +NL G++PL F + AD +
Sbjct: 634 GDENYGEGSSREHRALEPRFLGGRAIITKSFARIHETNLKKQGLLPLTF--ADPADYNKI 691
Query: 732 AGHERYTINLPNKVSEIRPGQDITVTTDTGKSFTCTVRFD---TEVELAYFDHGGIL 785
++ TI + + PG+ +T T+ + E ++ +F G L
Sbjct: 692 HPVDKLTI---QGLKDFAPGKPLTCIIKHPNGTQETILLNHTFNETQIEWFRAGSAL 745
>pdb|5ACN|A Chain A, Structure Of Activated Aconitase. Formation Of The
(4fe-4s) Cluster In The Crystal
pdb|6ACN|A Chain A, Structure Of Activated Aconitase. Formation Of The
(4fe-4s) Cluster In The Crystal
pdb|7ACN|A Chain A, Crystal Structures Of Aconitase With Isocitrate And
Nitroisocitrate Bound
Length = 754
Score = 194 bits (494), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 204/709 (28%), Positives = 301/709 (42%), Gaps = 126/709 (17%)
Query: 19 VPVDLVVDHSVQVDVARSENAVQANMEFEFQRNQERFAFLKWGSSAFHNMLVVPPGSGIV 78
VP + DH ++ + ++ +A NQE + FL + A + + PGSGI+
Sbjct: 93 VPSTIHCDHLIEAQLGGEKDLRRAK-----DINQEVYNFLA-TAGAKYGVGFWRPGSGII 146
Query: 79 HQVNLEYLGRVVFNTDGILYPDSVVGTDSHTTMIDXXXXXXXXXXXXXXXXXMLGQPMSM 138
HQ+ LE + G+L ++GTDSHT M G P +
Sbjct: 147 HQIILEN-----YAYPGVL----LIGTDSHTPNGGGLGGICIGVGGADAVDVMAGIPWEL 197
Query: 139 VLPGVVGFKLTGKLRDGVTATDLVLTVTQMLRKHGVVGKFVEFYGEGMGQLPLADRATIA 198
P V+G KLTG L + D++L V +L G G VE++G G+ + ATI
Sbjct: 198 KCPKVIGVKLTGSLSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPGVDSISCTGMATIC 257
Query: 199 NMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVSMIEEYLRANKMFVDYNEPEQERSYSS 258
NM E GAT FP +H +YL TGR+D ++ +E F D+ P+ Y
Sbjct: 258 NMGAEIGATTSVFPYNHRMKKYLSKTGRAD-IANLADE-------FKDHLVPDPGCHYDQ 309
Query: 259 YLQLDLADVEPCISGPKRPHDRVPLKDMKADWHACLENQVGFKGFAVPKQEQDKVAKFSF 318
++++L++++P I+GP P A P E VA+
Sbjct: 310 VIEINLSELKPHINGPFTPD------------------------LAHPVAEVGSVAEKE- 344
Query: 319 HGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLEVKPWVKTSLAPGSGV 378
G P +++ + I SCTN+S + A VAK+A GL+ K + ++ PGS
Sbjct: 345 -GWPLDIR-----VGLIGSCTNSSYEDMGRSAA-VAKQALAHGLKCKS--QFTITPGSEQ 395
Query: 379 VTKYLQQSGLQKYLNQQGFHIVGYGCTTCIGNSGDLDESVATAITENDIVAAAVLSGNRN 438
+ +++ G + L G ++ C CIG D +N IV S NRN
Sbjct: 396 IRATIERDGYAQVLRDVGGIVLANACGPCIGQ---WDRKDIKKGEKNTIVT----SYNRN 448
Query: 439 FEGR--VHPLTRANYLASPPLVVAYALAGTVDIDFEKEPIGTGKDGKGVYFKDIWPSNEE 496
F GR +P T A ++ SP +V A A+AGT+ + E + + TGKDGK FK P +E
Sbjct: 449 FTGRNDANPETHA-FVTSPEIVTALAIAGTLKFNPETDFL-TGKDGK--KFKLEAPDADE 504
Query: 497 I--AEVVQSSVLPDMFKSTYEAITKGNPMWNQLSVPTSTLYSWDPNSTYIHEPPYFKNMT 554
+ AE D + TY+ K + PTS + EP
Sbjct: 505 LPRAEF-------DPGQDTYQHPPKDSSGQRVDVSPTS-------QRLQLLEP------- 543
Query: 555 MEPPGPHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLLERGVDRKDFNSYGSRR 614
+ ++D L+ TTDHIS AG K F +
Sbjct: 544 FDKWDGKDLEDLQILIKVKGKCTTDHISAAGPWLK-----------------FRGHLDNI 586
Query: 615 GNDEVMARGTFANIRIVNKLLNG---EVGPKTVHIPTGEKLYVFDAAMRYKAAGHETIVL 671
N+ ++ N R N + N E GP V D A YK G +V+
Sbjct: 587 SNNLLIGAINIEN-RKANSVRNAVTQEFGP------------VPDTARYYKQHGIRWVVI 633
Query: 672 AGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCF 720
YG GSSR+ +A P LG +A+I KSF RIH +NL G++PL F
Sbjct: 634 GDENYGEGSSREHSALEPRHLGGRAIITKSFARIHETNLKKQGLLPLTF 682
>pdb|1C96|A Chain A, S642a:citrate Complex Of Aconitase
Length = 753
Score = 194 bits (493), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 203/709 (28%), Positives = 301/709 (42%), Gaps = 126/709 (17%)
Query: 19 VPVDLVVDHSVQVDVARSENAVQANMEFEFQRNQERFAFLKWGSSAFHNMLVVPPGSGIV 78
VP + DH ++ + ++ +A NQE + FL + A + + PGSGI+
Sbjct: 92 VPSTIHCDHLIEAQLGGEKDLRRAK-----DINQEVYNFLA-TAGAKYGVGFWRPGSGII 145
Query: 79 HQVNLEYLGRVVFNTDGILYPDSVVGTDSHTTMIDXXXXXXXXXXXXXXXXXMLGQPMSM 138
HQ+ LE + G+L ++GTDSHT M G P +
Sbjct: 146 HQIILEN-----YAYPGVL----LIGTDSHTPNGGGLGGICIGVGGADAVDVMAGIPWEL 196
Query: 139 VLPGVVGFKLTGKLRDGVTATDLVLTVTQMLRKHGVVGKFVEFYGEGMGQLPLADRATIA 198
P V+G KLTG L + D++L V +L G G VE++G G+ + ATI
Sbjct: 197 KCPKVIGVKLTGSLSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPGVDSISCTGMATIC 256
Query: 199 NMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVSMIEEYLRANKMFVDYNEPEQERSYSS 258
NM E GAT FP +H +YL TGR+D ++ +E F D+ P+ Y
Sbjct: 257 NMGAEIGATTSVFPYNHRMKKYLSKTGRAD-IANLADE-------FKDHLVPDPGCHYDQ 308
Query: 259 YLQLDLADVEPCISGPKRPHDRVPLKDMKADWHACLENQVGFKGFAVPKQEQDKVAKFSF 318
++++L++++P I+GP P A P E VA+
Sbjct: 309 VIEINLSELKPHINGPFTPD------------------------LAHPVAEVGSVAEKE- 343
Query: 319 HGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLEVKPWVKTSLAPGSGV 378
G P +++ + I SCTN+S + A VAK+A GL+ K + ++ PGS
Sbjct: 344 -GWPLDIR-----VGLIGSCTNSSYEDMGRSAA-VAKQALAHGLKCKS--QFTITPGSEQ 394
Query: 379 VTKYLQQSGLQKYLNQQGFHIVGYGCTTCIGNSGDLDESVATAITENDIVAAAVLSGNRN 438
+ +++ G + L G ++ C CIG D +N IV S NRN
Sbjct: 395 IRATIERDGYAQVLRDVGGIVLANACGPCIGQ---WDRKDIKKGEKNTIVT----SYNRN 447
Query: 439 FEGR--VHPLTRANYLASPPLVVAYALAGTVDIDFEKEPIGTGKDGKGVYFKDIWPSNEE 496
F GR +P T A ++ SP +V A A+AGT+ + E + + TGKDGK FK P +E
Sbjct: 448 FTGRNDANPETHA-FVTSPEIVTALAIAGTLKFNPETDFL-TGKDGK--KFKLEAPDADE 503
Query: 497 I--AEVVQSSVLPDMFKSTYEAITKGNPMWNQLSVPTSTLYSWDPNSTYIHEPPYFKNMT 554
+ AE D + TY+ K + PTS + EP
Sbjct: 504 LPRAEF-------DPGQDTYQHPPKDSSGQRVAVSPTS-------QRLQLLEP------- 542
Query: 555 MEPPGPHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLLERGVDRKDFNSYGSRR 614
+ ++D L+ TTDHIS AG K F +
Sbjct: 543 FDKWDGKDLEDLQILIKVKGKCTTDHISAAGPWLK-----------------FRGHLDNI 585
Query: 615 GNDEVMARGTFANIRIVNKLLNG---EVGPKTVHIPTGEKLYVFDAAMRYKAAGHETIVL 671
N+ ++ N R N + N E GP V D A YK G +V+
Sbjct: 586 SNNLLIGAINIEN-RKANSVRNAVTQEFGP------------VPDTARYYKQHGIRWVVI 632
Query: 672 AGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCF 720
YG G+SR+ +A P LG +A+I KSF RIH +NL G++PL F
Sbjct: 633 GDENYGEGASREHSALEPRHLGGRAIITKSFARIHETNLKKQGLLPLTF 681
>pdb|1C97|A Chain A, S642a:isocitrate Complex Of Aconitase
pdb|1B0K|A Chain A, S642a:fluorocitrate Complex Of Aconitase
Length = 753
Score = 193 bits (491), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 203/709 (28%), Positives = 301/709 (42%), Gaps = 126/709 (17%)
Query: 19 VPVDLVVDHSVQVDVARSENAVQANMEFEFQRNQERFAFLKWGSSAFHNMLVVPPGSGIV 78
VP + DH ++ + ++ +A NQE + FL + A + + PGSGI+
Sbjct: 92 VPSTIHCDHLIEAQLGGEKDLRRAK-----DINQEVYNFLA-TAGAKYGVGFWRPGSGII 145
Query: 79 HQVNLEYLGRVVFNTDGILYPDSVVGTDSHTTMIDXXXXXXXXXXXXXXXXXMLGQPMSM 138
HQ+ LE + G+L ++GTDSHT M G P +
Sbjct: 146 HQIILEN-----YAYPGVL----LIGTDSHTPNGGGLGGICIGVGGADAVDVMAGIPWEL 196
Query: 139 VLPGVVGFKLTGKLRDGVTATDLVLTVTQMLRKHGVVGKFVEFYGEGMGQLPLADRATIA 198
P V+G KLTG L + D++L V +L G G VE++G G+ + ATI
Sbjct: 197 KCPKVIGVKLTGSLSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPGVDSISCTGMATIC 256
Query: 199 NMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVSMIEEYLRANKMFVDYNEPEQERSYSS 258
NM E GAT FP +H +YL TGR+D ++ +E F D+ P+ Y
Sbjct: 257 NMGAEIGATTSVFPYNHRMKKYLSKTGRAD-IANLADE-------FKDHLVPDPGCHYDQ 308
Query: 259 YLQLDLADVEPCISGPKRPHDRVPLKDMKADWHACLENQVGFKGFAVPKQEQDKVAKFSF 318
++++L++++P I+GP P A P E VA+
Sbjct: 309 VIEINLSELKPHINGPFTPD------------------------LAHPVAEVGSVAEKE- 343
Query: 319 HGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLEVKPWVKTSLAPGSGV 378
G P +++ + I SCTN+S + A VAK+A GL+ K + ++ PGS
Sbjct: 344 -GWPLDIR-----VGLIGSCTNSSYEDMGRSAA-VAKQALAHGLKCKS--QFTITPGSEQ 394
Query: 379 VTKYLQQSGLQKYLNQQGFHIVGYGCTTCIGNSGDLDESVATAITENDIVAAAVLSGNRN 438
+ +++ G + L G ++ C CIG D +N IV S NRN
Sbjct: 395 IRATIERDGYAQVLRDVGGIVLANACGPCIGQ---WDRKDIKKGEKNTIVT----SYNRN 447
Query: 439 FEGR--VHPLTRANYLASPPLVVAYALAGTVDIDFEKEPIGTGKDGKGVYFKDIWPSNEE 496
F GR +P T A ++ SP +V A A+AGT+ + E + + TGKDGK FK P +E
Sbjct: 448 FTGRNDANPETHA-FVTSPEIVTALAIAGTLKFNPETDFL-TGKDGK--KFKLEAPDADE 503
Query: 497 I--AEVVQSSVLPDMFKSTYEAITKGNPMWNQLSVPTSTLYSWDPNSTYIHEPPYFKNMT 554
+ AE D + TY+ K + PTS + EP
Sbjct: 504 LPRAEF-------DPGQDTYQHPPKDSSGQRVDVSPTS-------QRLQLLEP------- 542
Query: 555 MEPPGPHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLLERGVDRKDFNSYGSRR 614
+ ++D L+ TTDHIS AG K F +
Sbjct: 543 FDKWDGKDLEDLQILIKVKGKCTTDHISAAGPWLK-----------------FRGHLDNI 585
Query: 615 GNDEVMARGTFANIRIVNKLLNG---EVGPKTVHIPTGEKLYVFDAAMRYKAAGHETIVL 671
N+ ++ N R N + N E GP V D A YK G +V+
Sbjct: 586 SNNLLIGAINIEN-RKANSVRNAVTQEFGP------------VPDTARYYKQHGIRWVVI 632
Query: 672 AGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCF 720
YG G+SR+ +A P LG +A+I KSF RIH +NL G++PL F
Sbjct: 633 GDENYGEGASREHSALEPRHLGGRAIITKSFARIHETNLKKQGLLPLTF 681
>pdb|1B0J|A Chain A, Crystal Structure Of Aconitase With Isocitrate
Length = 754
Score = 193 bits (491), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 203/709 (28%), Positives = 301/709 (42%), Gaps = 126/709 (17%)
Query: 19 VPVDLVVDHSVQVDVARSENAVQANMEFEFQRNQERFAFLKWGSSAFHNMLVVPPGSGIV 78
VP + DH ++ + ++ +A NQE + FL + A + + PGSGI+
Sbjct: 93 VPSTIHCDHLIEAQLGGEKDLRRAK-----DINQEVYNFLA-TAGAKYGVGFWRPGSGII 146
Query: 79 HQVNLEYLGRVVFNTDGILYPDSVVGTDSHTTMIDXXXXXXXXXXXXXXXXXMLGQPMSM 138
HQ+ LE + G+L ++GTDSHT M G P +
Sbjct: 147 HQIILEN-----YAYPGVL----LIGTDSHTPNGGGLGGICIGVGGADAVDVMAGIPWEL 197
Query: 139 VLPGVVGFKLTGKLRDGVTATDLVLTVTQMLRKHGVVGKFVEFYGEGMGQLPLADRATIA 198
P V+G KLTG L + D++L V +L G G VE++G G+ + ATI
Sbjct: 198 KCPKVIGVKLTGSLSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPGVDSISCTGMATIC 257
Query: 199 NMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVSMIEEYLRANKMFVDYNEPEQERSYSS 258
NM E GAT FP +H +YL TGR+D ++ +E F D+ P+ Y
Sbjct: 258 NMGAEIGATTSVFPYNHRMKKYLSKTGRAD-IANLADE-------FKDHLVPDPGCHYDQ 309
Query: 259 YLQLDLADVEPCISGPKRPHDRVPLKDMKADWHACLENQVGFKGFAVPKQEQDKVAKFSF 318
++++L++++P I+GP P A P E VA+
Sbjct: 310 VIEINLSELKPHINGPFTPD------------------------LAHPVAEVGSVAEKE- 344
Query: 319 HGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLEVKPWVKTSLAPGSGV 378
G P +++ + I SCTN+S + A VAK+A GL+ K + ++ PGS
Sbjct: 345 -GWPLDIR-----VGLIGSCTNSSYEDMGRSAA-VAKQALAHGLKCKS--QFTITPGSEQ 395
Query: 379 VTKYLQQSGLQKYLNQQGFHIVGYGCTTCIGNSGDLDESVATAITENDIVAAAVLSGNRN 438
+ +++ G + L G ++ C CIG D +N IV S NRN
Sbjct: 396 IRATIERDGYAQVLRDVGGIVLANACGPCIGQ---WDRKDIKKGEKNTIVT----SYNRN 448
Query: 439 FEGR--VHPLTRANYLASPPLVVAYALAGTVDIDFEKEPIGTGKDGKGVYFKDIWPSNEE 496
F GR +P T A ++ SP +V A A+AGT+ + E + + TGKDGK FK P +E
Sbjct: 449 FTGRNDANPETHA-FVTSPEIVTALAIAGTLKFNPETDFL-TGKDGK--KFKLEAPDADE 504
Query: 497 I--AEVVQSSVLPDMFKSTYEAITKGNPMWNQLSVPTSTLYSWDPNSTYIHEPPYFKNMT 554
+ AE D + TY+ K + PTS + EP
Sbjct: 505 LPRAEF-------DPGQDTYQHPPKDSSGQRVDVSPTS-------QRLQLLEP------- 543
Query: 555 MEPPGPHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLLERGVDRKDFNSYGSRR 614
+ ++D L+ TTDHIS AG K F +
Sbjct: 544 FDKWDGKDLEDLQILIKVKGKCTTDHISAAGPWLK-----------------FRGHLDNI 586
Query: 615 GNDEVMARGTFANIRIVNKLLNG---EVGPKTVHIPTGEKLYVFDAAMRYKAAGHETIVL 671
N+ ++ N R N + N E GP V D A YK G +V+
Sbjct: 587 SNNLLIGAINIEN-RKANSVRNAVTQEFGP------------VPDTARYYKQHGIRWVVI 633
Query: 672 AGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCF 720
YG G+SR+ +A P LG +A+I KSF RIH +NL G++PL F
Sbjct: 634 GDENYGEGASREHSALEPRHLGGRAIITKSFARIHETNLKKQGLLPLTF 682
>pdb|1B0M|A Chain A, Aconitase R644q:fluorocitrate Complex
Length = 753
Score = 192 bits (489), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 203/709 (28%), Positives = 301/709 (42%), Gaps = 126/709 (17%)
Query: 19 VPVDLVVDHSVQVDVARSENAVQANMEFEFQRNQERFAFLKWGSSAFHNMLVVPPGSGIV 78
VP + DH ++ + ++ +A NQE + FL + A + + PGSGI+
Sbjct: 92 VPSTIHCDHLIEAQLGGEKDLRRAK-----DINQEVYNFLA-TAGAKYGVGFWRPGSGII 145
Query: 79 HQVNLEYLGRVVFNTDGILYPDSVVGTDSHTTMIDXXXXXXXXXXXXXXXXXMLGQPMSM 138
HQ+ LE + G+L ++GTDSHT M G P +
Sbjct: 146 HQIILEN-----YAYPGVL----LIGTDSHTPNGGGLGGICIGVGGADAVDVMAGIPWEL 196
Query: 139 VLPGVVGFKLTGKLRDGVTATDLVLTVTQMLRKHGVVGKFVEFYGEGMGQLPLADRATIA 198
P V+G KLTG L + D++L V +L G G VE++G G+ + ATI
Sbjct: 197 KCPKVIGVKLTGSLSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPGVDSISCTGMATIC 256
Query: 199 NMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVSMIEEYLRANKMFVDYNEPEQERSYSS 258
NM E GAT FP +H +YL TGR+D ++ +E F D+ P+ Y
Sbjct: 257 NMGAEIGATTSVFPYNHRMKKYLSKTGRAD-IANLADE-------FKDHLVPDPGCHYDQ 308
Query: 259 YLQLDLADVEPCISGPKRPHDRVPLKDMKADWHACLENQVGFKGFAVPKQEQDKVAKFSF 318
++++L++++P I+GP P A P E VA+
Sbjct: 309 VIEINLSELKPHINGPFTPD------------------------LAHPVAEVGSVAEKE- 343
Query: 319 HGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLEVKPWVKTSLAPGSGV 378
G P +++ + I SCTN+S + A VAK+A GL+ K + ++ PGS
Sbjct: 344 -GWPLDIR-----VGLIGSCTNSSYEDMGRSAA-VAKQALAHGLKCKS--QFTITPGSEQ 394
Query: 379 VTKYLQQSGLQKYLNQQGFHIVGYGCTTCIGNSGDLDESVATAITENDIVAAAVLSGNRN 438
+ +++ G + L G ++ C CIG D +N IV S NRN
Sbjct: 395 IRATIERDGYAQVLRDVGGIVLANACGPCIGQ---WDRKDIKKGEKNTIVT----SYNRN 447
Query: 439 FEGR--VHPLTRANYLASPPLVVAYALAGTVDIDFEKEPIGTGKDGKGVYFKDIWPSNEE 496
F GR +P T A ++ SP +V A A+AGT+ + E + + TGKDGK FK P +E
Sbjct: 448 FTGRNDANPETHA-FVTSPEIVTALAIAGTLKFNPETDFL-TGKDGK--KFKLEAPDADE 503
Query: 497 I--AEVVQSSVLPDMFKSTYEAITKGNPMWNQLSVPTSTLYSWDPNSTYIHEPPYFKNMT 554
+ AE D + TY+ K + PTS + EP
Sbjct: 504 LPRAEF-------DPGQDTYQHPPKDSSGQRVDVSPTS-------QRLQLLEP------- 542
Query: 555 MEPPGPHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLLERGVDRKDFNSYGSRR 614
+ ++D L+ TTDHIS AG K F +
Sbjct: 543 FDKWDGKDLEDLQILIKVKGKCTTDHISAAGPWLK-----------------FRGHLDNI 585
Query: 615 GNDEVMARGTFANIRIVNKLLNG---EVGPKTVHIPTGEKLYVFDAAMRYKAAGHETIVL 671
N+ ++ N R N + N E GP V D A YK G +V+
Sbjct: 586 SNNLLIGAINIEN-RKANSVRNAVTQEFGP------------VPDTARYYKQHGIRWVVI 632
Query: 672 AGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCF 720
YG GSS++ +A P LG +A+I KSF RIH +NL G++PL F
Sbjct: 633 GDENYGEGSSQEHSALEPRHLGGRAIITKSFARIHETNLKKQGLLPLTF 681
>pdb|2PKP|A Chain A, Crystal Structure Of 3-Isopropylmalate Dehydratase (Leud)
From Methhanocaldococcus Jannaschii Dsm2661 (Mj1271)
Length = 170
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 37/127 (29%), Positives = 58/127 (45%), Gaps = 17/127 (13%)
Query: 669 IVLAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDADT 728
+++AG +G GSSR+ A G+KAVIAKSF RI N + +G+IP+ E D
Sbjct: 54 VIVAGENFGCGSSREQAVIAIKYCGIKAVIAKSFARIFYRNAINVGLIPIIANTDEIKD- 112
Query: 729 LGLAGHERYTINLPNKVSEIRPGQDITVTTDTGKSFTCTVRFDTEVELAYFDHGGILPYV 788
+ EI ++ V T+ K+ C E E+ GG++ Y+
Sbjct: 113 --------------GDIVEIDLDKEEIVITNKNKTIKCETPKGLEREI--LAAGGLVNYL 156
Query: 789 IRNLIKQ 795
+ + Q
Sbjct: 157 KKRKLIQ 163
>pdb|1V7L|A Chain A, Structure Of 3-Isopropylmalate Isomerase Small Subunit
From Pyrococcus Horikoshii
pdb|1V7L|B Chain B, Structure Of 3-Isopropylmalate Isomerase Small Subunit
From Pyrococcus Horikoshii
Length = 163
Score = 49.3 bits (116), Expect = 9e-06, Method: Composition-based stats.
Identities = 41/122 (33%), Positives = 56/122 (45%), Gaps = 19/122 (15%)
Query: 669 IVLAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDADT 728
+V+AG +G GSSR+ AA LG+ VIA+SF RI N + +G IPL T
Sbjct: 54 VVVAGKNFGIGSSRESAALALKALGIAGVIAESFGRIFYRNAINIG-IPLLL-----GKT 107
Query: 729 LGLAGHERYTINLPNKVSEIRPGQDITVTTDTGKSFTCTVRFDTEVELAYFDHGGILPYV 788
GL + T+N + E+R G +I + VR GGIL Y+
Sbjct: 108 EGLKDGDLVTVNW--ETGEVRKGDEILMFEPLEDFLLEIVR-----------EGGILEYI 154
Query: 789 IR 790
R
Sbjct: 155 RR 156
>pdb|2HCU|A Chain A, Crystal Structure Of Smu.1381 (Or Leud) From Streptococcus
Mutans
Length = 213
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
Query: 668 TIVLAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDAD 727
+I++ G +G+GSSR+ AA G K ++A SF IH +N + GI+P+ +P E D
Sbjct: 87 SILITGDNFGAGSSREHAAWALADYGFKVIVAGSFGDIHYNNDLNNGILPII-QPKEVRD 145
Query: 728 TLG-LAGHERYTINL 741
L L + T+NL
Sbjct: 146 KLAKLKPTDEVTVNL 160
>pdb|3VBA|A Chain A, Crystal Structure Of Methanogen 3-Isopropylmalate
Isomerase Small Subunit
pdb|3VBA|B Chain B, Crystal Structure Of Methanogen 3-Isopropylmalate
Isomerase Small Subunit
pdb|3VBA|C Chain C, Crystal Structure Of Methanogen 3-Isopropylmalate
Isomerase Small Subunit
pdb|3VBA|D Chain D, Crystal Structure Of Methanogen 3-Isopropylmalate
Isomerase Small Subunit
pdb|3VBA|E Chain E, Crystal Structure Of Methanogen 3-Isopropylmalate
Isomerase Small Subunit
pdb|3VBA|F Chain F, Crystal Structure Of Methanogen 3-Isopropylmalate
Isomerase Small Subunit
Length = 176
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 58/130 (44%), Gaps = 27/130 (20%)
Query: 669 IVLAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDADT 728
I++ G +G GSSR+ A G G+ VIA+SF RI N + +G +PL G
Sbjct: 56 IIVGGKNFGCGSSREHAPLGLKGAGISCVIAESFARIFYRNAINVG-LPLIECKG----- 109
Query: 729 LGLAGHERYTINLPNKVSEIRPGQDITVTTDTGKSFTCTV------RFDTEVELAYFDHG 782
+ KV+E G ++ V +TG+ T + E + + G
Sbjct: 110 ------------ISEKVNE---GDELEVNLETGEIKNLTTGEVLKGQKLPEFMMEILEAG 154
Query: 783 GILPYVIRNL 792
G++PY+ + +
Sbjct: 155 GLMPYLKKKM 164
>pdb|3Q3W|A Chain A, Isopropylmalate Isomerase Small Subunit From Campylobacter
Jejuni.
pdb|3Q3W|B Chain B, Isopropylmalate Isomerase Small Subunit From Campylobacter
Jejuni
Length = 203
Score = 40.0 bits (92), Expect = 0.005, Method: Composition-based stats.
Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 16/104 (15%)
Query: 650 EKLYVFDAAMRYKAAGHETIVLAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSN 709
E + D + K + +I+++ +GSGSSR+ A + G++A+IA SF I ++N
Sbjct: 56 ESVLNXDFNLNKKEYQNSSILVSFENFGSGSSREHAPWALVDYGIRAIIAPSFADIFKNN 115
Query: 710 LVGMGIIPLCFKPGEDADTLGLAGHERYTINLPNKVSEIRPGQD 753
+G G++ T+ LA E I V E++ QD
Sbjct: 116 ALGNGLL-----------TIELAKDEVLEI-----VDELKKSQD 143
>pdb|1L5J|A Chain A, Crystal Structure Of E. Coli Aconitase B.
pdb|1L5J|B Chain B, Crystal Structure Of E. Coli Aconitase B
Length = 865
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 86/401 (21%), Positives = 141/401 (35%), Gaps = 107/401 (26%)
Query: 73 PGSGIVHQVNLEYLGRVVFNTDGILYPDSV-VGTDSHTTMIDXXXXXXXXXXXXXXXXXM 131
PG G++H +L R +L PD+V G DSHT
Sbjct: 474 PGDGVIHS----WLNR-------MLLPDTVGTGGDSHTRFPIGISFPAGSGLVAFAAATG 522
Query: 132 LGQPMSMVLPGVVGFKLTGKLRDGVTATDLV------------LTVTQMLRKHGVVGKFV 179
+ M + +P V + GK++ G+T DLV LTV + +K+ G+ +
Sbjct: 523 V---MPLDMPESVLVRFKGKMQPGITLRDLVHAIPLYAIKQGLLTVEKKGKKNIFSGRIL 579
Query: 180 EFYGEGMGQLPLADRATIANMSPEYGAT-----------MGFFPVDHVTLQYLKLTGRSD 228
E EG+ L + + + S E A + + + V L+++ G D
Sbjct: 580 EI--EGLPDLKVEQAFELTDASAERSAAGCTIKLNKEPIIEYLNSNIVLLKWMIAEGYGD 637
Query: 229 -----ETVSMIEEYLRANKMFVDYNEPEQERSYSSYLQLDLADV-EPCISGPKRPHDRVP 282
+ +E++L ++ + + Y++ + +DLAD+ EP + P P D P
Sbjct: 638 RRTLERRIQGMEKWLANPELLEA----DADAEYAAVIDIDLADIKEPILCAPNDPDDARP 693
Query: 283 LKDMKADWHACLENQVGFKGFAVPKQEQDKVAKFSFHGQPAELKHGSVVIAAITSCTNTS 342
L AV ++ D+V I SC
Sbjct: 694 LS-------------------AVQGEKIDEV--------------------FIGSCMTNI 714
Query: 343 NPSVMLGAGLVAKKACELGLEVKPWVKTSLAPGSGVVTKYLQQSGLQKYLNQQGFHIVGY 402
G L A K L + WV AP + + L + G + G I
Sbjct: 715 GHFRAAGKLLDAHKG---QLPTRLWV----APPTRMDAAQLTEEGYYSVFGKSGARIEIP 767
Query: 403 GCTTCIGNSGDLDESVATAITENDIVAAAVLSGNRNFEGRV 443
GC+ C+GN + + A V + RNF R+
Sbjct: 768 GCSLCMGNQARVADG-----------ATVVSTSTRNFPNRL 797
>pdb|3H5H|A Chain A, Leud_1-186 Small Subunit Of Isopropylmalate Isomerase
(Rv2987c) From Mycobacterium Tuberculosis
pdb|3H5H|B Chain B, Leud_1-186 Small Subunit Of Isopropylmalate Isomerase
(Rv2987c) From Mycobacterium Tuberculosis
Length = 189
Score = 35.4 bits (80), Expect = 0.12, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 29/49 (59%)
Query: 668 TIVLAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGII 716
++++AG ++G+GSSR+ A M G + VI+ F I R N G++
Sbjct: 66 SVLVAGPDFGTGSSREHAVWALMDYGFRVVISSRFGDIFRGNAGKAGLL 114
>pdb|3H5J|A Chain A, Leud_1-168 Small Subunit Of Isopropylmalate Isomerase
(Rv2987c) From Mycobacterium Tuberculosis
pdb|3H5J|B Chain B, Leud_1-168 Small Subunit Of Isopropylmalate Isomerase
(Rv2987c) From Mycobacterium Tuberculosis
Length = 171
Score = 35.4 bits (80), Expect = 0.12, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 29/49 (59%)
Query: 668 TIVLAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGII 716
++++AG ++G+GSSR+ A M G + VI+ F I R N G++
Sbjct: 66 SVLVAGPDFGTGSSREHAVWALMDYGFRVVISSRFGDIFRGNAGKAGLL 114
>pdb|3H5E|A Chain A, Leud_1-156 Small Subunit Of Isopropylmalate Isomerase
(rv2987c) From Mycobacterium Tuberculosis
pdb|3H5E|B Chain B, Leud_1-156 Small Subunit Of Isopropylmalate Isomerase
(rv2987c) From Mycobacterium Tuberculosis
Length = 159
Score = 35.4 bits (80), Expect = 0.13, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 29/49 (59%)
Query: 668 TIVLAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGII 716
++++AG ++G+GSSR+ A M G + VI+ F I R N G++
Sbjct: 66 SVLVAGPDFGTGSSREHAVWALMDYGFRVVISSRFGDIFRGNAGKAGLL 114
>pdb|3O8L|A Chain A, Structure Of Phosphofructokinase From Rabbit Skeletal
Muscle
pdb|3O8L|B Chain B, Structure Of Phosphofructokinase From Rabbit Skeletal
Muscle
pdb|3O8N|A Chain A, Structure Of Phosphofructokinase From Rabbit Skeletal
Muscle
pdb|3O8N|B Chain B, Structure Of Phosphofructokinase From Rabbit Skeletal
Muscle
Length = 762
Score = 33.9 bits (76), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 47/106 (44%), Gaps = 15/106 (14%)
Query: 672 AGAEYGSGSSRDWAAKGPMLLGVKAVI-AKSFERIHRSNLVGMGIIPLCFKPGEDADTLG 730
AG Y G W +G LG K + KSFE+I +N+ I L G +A T G
Sbjct: 451 AGWSYVGG----WTGQGGSKLGSKRTLPKKSFEQIS-ANITKFNIQGLVIIGGFEAYTGG 505
Query: 731 LA---GHERYT------INLPNKVSEIRPGQDITVTTDTGKSFTCT 767
L G +++ + +P VS PG D +V DT + CT
Sbjct: 506 LELMEGRKQFDELCIPFVVIPATVSNNVPGSDFSVGADTALNTICT 551
>pdb|1THT|A Chain A, Structure Of A Myristoyl-Acp-Specific Thioesterase From
Vibrio Harveyi
pdb|1THT|B Chain B, Structure Of A Myristoyl-Acp-Specific Thioesterase From
Vibrio Harveyi
Length = 305
Score = 32.7 bits (73), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 366 PWVKTSLAPGSGVVTKYLQQSGLQKYLNQQGFHIVGYGCTTCIG-NSGDLDESVAT 420
P+ ++ SG + +GL +YL+ GFH+ Y +G +SG +DE T
Sbjct: 32 PFKNNTILIASGFARRMDHFAGLAEYLSTNGFHVFRYDSLHHVGLSSGSIDEFTMT 87
>pdb|1PW4|A Chain A, Crystal Structure Of The Glycerol-3-Phosphate Transporter
From E.Coli
Length = 451
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 337 SCTNTSNPSVMLGAGLVAKKACELGLEVKPWVKTSLA 373
S ++ SNP V L AGL+ A L + PW +S+A
Sbjct: 84 SVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIA 120
>pdb|4GGB|A Chain A, Crystal Structure Of A Proposed Galactarolactone
Cycloisomerase From Agrobacterium Tumefaciens, Target
Efi-500704, With Bound Ca, Disordered Loops
pdb|4HPN|A Chain A, Crystal Structure Of A Proposed Galactarolactone
Cycloisomerase From Agrobacterium Tumefaciens, Target
Efi-500704, With Bound Ca, Ordered Loops
Length = 378
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 34/82 (41%), Gaps = 22/82 (26%)
Query: 5 MKNLNSDPKKINPLVPVDLVVDHSVQVDVARSENAVQANMEFEFQRNQERFAFLKWGSSA 64
M + DP ++NP+ P+ MEF+ N R A L+ A
Sbjct: 311 MAAMTPDPVRVNPIEPI----------------------MEFDRTHNPFRQAVLREPLEA 348
Query: 65 FHNMLVVPPGSGIVHQVNLEYL 86
+ ++ +P G G+ ++N + L
Sbjct: 349 VNGVVTIPDGPGLGIEINRDAL 370
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,975,803
Number of Sequences: 62578
Number of extensions: 1110670
Number of successful extensions: 2303
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 2235
Number of HSP's gapped (non-prelim): 51
length of query: 795
length of database: 14,973,337
effective HSP length: 107
effective length of query: 688
effective length of database: 8,277,491
effective search space: 5694913808
effective search space used: 5694913808
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)