Query 003793
Match_columns 795
No_of_seqs 315 out of 2616
Neff 5.6
Searched_HMMs 46136
Date Thu Mar 28 12:08:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003793.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003793hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00070 aconitate hydratase 100.0 5E-236 1E-240 2038.5 70.0 795 1-795 142-936 (936)
2 PTZ00092 aconitate hydratase-l 100.0 2E-233 4E-238 2014.8 68.6 788 1-794 110-897 (898)
3 KOG0452 RNA-binding translatio 100.0 1E-235 3E-240 1897.2 43.2 790 1-793 103-892 (892)
4 TIGR01341 aconitase_1 aconitat 100.0 9E-232 2E-236 1996.9 67.9 782 1-793 86-876 (876)
5 PRK12881 acnA aconitate hydrat 100.0 1E-230 3E-235 1992.9 68.0 776 1-794 103-889 (889)
6 PRK09277 aconitate hydratase; 100.0 4E-230 9E-235 1984.8 69.3 778 1-795 104-888 (888)
7 TIGR02333 2met_isocit_dHY 2-me 100.0 3E-226 7E-231 1943.3 66.6 757 1-794 93-858 (858)
8 COG1048 AcnA Aconitase A [Ener 100.0 2E-223 4E-228 1897.3 62.2 763 1-794 95-861 (861)
9 TIGR01340 aconitase_mito aconi 100.0 9E-168 2E-172 1457.9 55.8 656 5-788 73-745 (745)
10 PRK07229 aconitate hydratase; 100.0 4E-156 1E-160 1353.5 51.4 600 3-793 44-645 (646)
11 TIGR01342 acon_putative aconit 100.0 2E-154 3E-159 1337.9 50.3 606 4-794 42-654 (658)
12 TIGR00139 h_aconitase homoacon 100.0 2E-141 4E-146 1226.7 49.5 623 5-792 48-712 (712)
13 PRK11413 putative hydratase; P 100.0 1E-139 3E-144 1216.6 47.2 643 4-791 74-751 (751)
14 KOG0453 Aconitase/homoaconitas 100.0 4E-133 9E-138 1102.3 42.4 655 19-791 116-775 (778)
15 cd01586 AcnA_IRP Aconitase A c 100.0 7E-124 2E-128 1019.1 34.9 382 1-467 19-404 (404)
16 TIGR00170 leuC 3-isopropylmala 100.0 3E-115 6E-120 976.3 36.9 414 3-468 42-460 (465)
17 PRK12466 isopropylmalate isome 100.0 2E-114 4E-119 970.3 36.2 413 4-468 44-462 (471)
18 cd01584 AcnA_Mitochondrial Aco 100.0 2E-114 5E-119 954.1 35.9 395 4-467 15-412 (412)
19 PRK05478 isopropylmalate isome 100.0 5E-114 1E-118 967.3 36.7 414 3-468 42-460 (466)
20 cd01583 IPMI 3-isopropylmalate 100.0 7E-113 2E-117 936.5 36.0 367 3-467 14-382 (382)
21 PF00330 Aconitase: Aconitase 100.0 1E-113 2E-118 967.7 28.9 418 4-465 43-465 (465)
22 cd01585 AcnA_Bact Aconitase ca 100.0 1E-111 3E-116 924.0 34.8 365 3-467 15-380 (380)
23 COG0065 LeuC 3-isopropylmalate 100.0 2E-110 4E-115 896.8 33.5 372 3-468 44-417 (423)
24 TIGR01343 hacA_fam homoaconita 100.0 4E-110 8E-115 920.5 35.0 368 3-468 40-409 (412)
25 TIGR02086 IPMI_arch 3-isopropy 100.0 2E-109 4E-114 915.1 34.9 367 3-468 41-408 (412)
26 PRK00402 3-isopropylmalate deh 100.0 3E-109 7E-114 914.6 35.5 368 3-468 43-412 (418)
27 TIGR02083 LEU2 3-isopropylmala 100.0 7E-109 2E-113 909.8 35.7 371 3-468 42-414 (419)
28 cd01582 Homoaconitase Homoacon 100.0 1E-103 2E-108 855.2 33.2 347 5-467 15-363 (363)
29 cd01581 AcnB Aconitate hydrata 100.0 1E-100 3E-105 848.1 33.4 367 3-467 40-436 (436)
30 cd01351 Aconitase Aconitase ca 100.0 6.8E-98 1E-102 824.7 33.4 375 3-467 14-389 (389)
31 PRK09238 bifunctional aconitat 100.0 5.4E-93 1.2E-97 826.4 34.9 370 2-468 411-810 (835)
32 TIGR00117 acnB aconitate hydra 100.0 8.4E-92 1.8E-96 814.0 36.2 369 2-468 412-810 (844)
33 PLN00094 aconitate hydratase 2 100.0 9.1E-90 2E-94 794.5 35.2 370 2-468 485-884 (938)
34 cd01580 AcnA_IRP_Swivel Aconit 100.0 2.4E-64 5.2E-69 489.2 12.8 170 571-740 1-170 (171)
35 KOG0454 3-isopropylmalate dehy 100.0 5.8E-46 1.2E-50 399.7 18.3 402 236-743 13-421 (502)
36 COG1049 AcnB Aconitase B [Ener 100.0 2.2E-45 4.8E-50 406.0 20.8 329 72-502 464-822 (852)
37 cd01578 AcnA_Mitochon_Swivel M 100.0 5E-40 1.1E-44 315.5 9.2 141 571-740 1-141 (149)
38 COG0066 LeuD 3-isopropylmalate 100.0 8.8E-38 1.9E-42 309.2 10.2 166 568-793 10-180 (191)
39 PRK00439 leuD 3-isopropylmalat 100.0 1.5E-37 3.3E-42 306.8 11.9 156 569-792 4-159 (163)
40 TIGR02084 leud 3-isopropylmala 100.0 2.2E-37 4.7E-42 303.0 10.7 154 569-790 3-156 (156)
41 PRK14023 homoaconitate hydrata 100.0 3.1E-37 6.7E-42 304.9 11.9 154 569-791 4-157 (166)
42 TIGR02087 LEUD_arch 3-isopropy 100.0 2.3E-37 5E-42 302.4 10.3 152 569-791 3-154 (154)
43 PLN00072 3-isopropylmalate iso 100.0 2E-35 4.3E-40 305.0 12.2 171 565-792 70-241 (246)
44 TIGR00171 leuD 3-isopropylmala 100.0 1.1E-33 2.3E-38 284.2 8.6 165 565-782 8-174 (188)
45 PF00694 Aconitase_C: Aconitas 100.0 7.9E-34 1.7E-38 269.9 2.7 128 595-722 3-130 (131)
46 cd01579 AcnA_Bact_Swivel Bacte 100.0 2.3E-33 5E-38 264.2 5.7 121 571-741 1-121 (121)
47 PRK01641 leuD isopropylmalate 100.0 8.9E-33 1.9E-37 280.3 9.8 160 566-782 9-172 (200)
48 cd01577 IPMI_Swivel Aconatase- 100.0 3.2E-30 7E-35 230.6 6.1 73 668-741 19-91 (91)
49 cd00404 Aconitase_swivel Aconi 100.0 1.7E-29 3.8E-34 224.4 6.5 71 668-740 17-87 (88)
50 cd01674 Homoaconitase_Swivel H 99.9 2.6E-28 5.6E-33 228.9 3.5 99 573-722 3-101 (129)
51 PRK09238 bifunctional aconitat 99.9 5.5E-27 1.2E-31 275.0 11.7 163 565-793 167-342 (835)
52 KOG0454 3-isopropylmalate dehy 99.9 2E-25 4.2E-30 241.6 6.5 377 5-466 111-498 (502)
53 cd01576 AcnB_Swivel Aconitase 99.9 5E-25 1.1E-29 209.2 6.9 67 668-740 52-130 (131)
54 TIGR00117 acnB aconitate hydra 99.9 4.3E-24 9.4E-29 250.0 10.8 161 566-793 169-343 (844)
55 PRK14812 hypothetical protein; 99.8 5.1E-20 1.1E-24 172.7 8.1 90 678-782 2-92 (119)
56 PLN00094 aconitate hydratase 2 99.8 1.5E-19 3.3E-24 211.8 12.7 119 656-793 283-415 (938)
57 PF06434 Aconitase_2_N: Aconit 98.4 5.6E-07 1.2E-11 90.6 6.9 120 656-793 44-175 (204)
58 COG1049 AcnB Aconitase B [Ener 96.2 0.0086 1.9E-07 69.5 7.0 117 657-791 213-342 (852)
59 PF04412 DUF521: Protein of un 96.0 0.018 3.9E-07 65.4 8.2 69 328-404 288-356 (400)
60 COG1679 Predicted aconitase [G 94.2 0.12 2.6E-06 57.7 7.3 69 328-404 288-356 (403)
61 cd01355 AcnX Putative Aconitas 91.6 0.42 9.2E-06 54.3 7.1 69 330-409 279-347 (389)
62 COG0311 PDX2 Predicted glutami 38.1 35 0.00075 35.4 3.6 75 367-444 38-114 (194)
63 PF00694 Aconitase_C: Aconitas 31.7 24 0.00053 34.5 1.3 30 567-608 10-39 (131)
64 COG1833 Uri superfamily endonu 30.7 68 0.0015 31.5 4.1 36 369-411 70-105 (132)
65 TIGR00829 FRU PTS system, fruc 23.6 68 0.0015 28.9 2.6 31 334-365 2-32 (85)
No 1
>PLN00070 aconitate hydratase
Probab=100.00 E-value=4.9e-236 Score=2038.49 Aligned_cols=795 Identities=93% Similarity=1.448 Sum_probs=766.3
Q ss_pred ChHHHHhcCCCCCccCCCCceEEEccCCcccCCCCchhHHHHhHHHHHHHhhhhhhhhhhhccccCcceeeCCCCceecc
Q 003793 1 MRDAMKNLNSDPKKINPLVPVDLVVDHSVQVDVARSENAVQANMEFEFQRNQERFAFLKWGSSAFHNMLVVPPGSGIVHQ 80 (795)
Q Consensus 1 ~r~~~~~~g~~~~~~~P~~pv~lv~DH~v~~~~~~~~~a~~~n~~~e~~rn~e~~~fl~~~~~~~~~~~~~~pg~GI~Hq 80 (795)
|||+++++|+||+++||.+||+|||||+|++|.+++++++..|+.+||+||+|||.|++|++++|.||+|+|||+|||||
T Consensus 142 mr~a~~~~g~dp~~inp~vPvdlviDHsvqvd~~g~~~a~~~n~~~e~~rN~Ery~flkw~~~af~~~~vvpPG~GI~HQ 221 (936)
T PLN00070 142 MRDAMNNLGGDPNKINPLVPVDLVIDHSVQVDVARSENAVQANMELEFQRNKERFAFLKWGSTAFQNMLVVPPGSGIVHQ 221 (936)
T ss_pred HHHHHHHcCCCccccCCCCCcceEecCceeecccCCcCHHHHHHHHHHHHhHHHhChhhhhhhhhcCccccCCCCceEee
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccceeecCCCccccCeEEecCCCCCccCccccccccccHHHHHHHHccCceeeeCCcEEEEEEeccCCCCCChhh
Q 003793 81 VNLEYLGRVVFNTDGILYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLTGKLRDGVTATD 160 (795)
Q Consensus 81 v~~E~~a~~v~~~~G~~~P~~ivGtDSHT~~~GalG~la~GvGg~e~~~~m~g~~~~~~vPevv~V~l~G~l~~gVtakD 160 (795)
|++||||++|+.++|+++||++|||||||||+||||+|||||||+|++++|+|||+||++||||+|+|+|+|++||||||
T Consensus 222 V~lE~la~~v~~~~G~~~PdtlVGtDSHT~~~GglG~lg~GVGg~EaeaaMlgqp~~~~vPevvgV~LtG~L~~GVtAKD 301 (936)
T PLN00070 222 VNLEYLGRVVFNTDGILYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATD 301 (936)
T ss_pred echhhhcccccccCCcccCCeEEeCCcccCCCCcccccEecccHHHHHHHHhCCeEEeeCCCEEEEEEEeecCCCCCHhH
Confidence 99999999999778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCccceEEEEecCcCCCCCcccchhhcccccccCceeeeeeCChHHHHHHHhcCCChhhHHHHHHHHHH
Q 003793 161 LVLTVTQMLRKHGVVGKFVEFYGEGMGQLPLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVSMIEEYLRA 240 (795)
Q Consensus 161 viL~i~~~l~~~G~~g~~vEf~G~gv~~Ls~~~R~TI~NMa~E~GA~~~~fp~D~~t~~yL~~~gr~~~~~~~~~~y~~~ 240 (795)
|||+|+++||++|++||+|||+|||+++||+++|||||||++|+|||+||||+|++|++||+.|||++++++++++|+|+
T Consensus 302 liL~i~~~Lr~~GvvGk~VEF~G~Gv~~LSv~dRaTIaNMa~E~GAt~g~FP~De~T~~YL~~tgR~~~~~~~v~~y~k~ 381 (936)
T PLN00070 302 LVLTVTQMLRKHGVVGKFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVAMIEAYLRA 381 (936)
T ss_pred HHHHHHHHhCcCccceEEEEEeCCccccCCHhHHhhHhhcchhhCceeeEecCChHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccCCCCCCCCccceEEEEECCCccceeecCCCCCCccccCCcchhhHHhhhccccccCCCCCccccccccccccCC
Q 003793 241 NKMFVDYNEPEQERSYSSYLQLDLADVEPCISGPKRPHDRVPLKDMKADWHACLENQVGFKGFAVPKQEQDKVAKFSFHG 320 (795)
Q Consensus 241 ~~l~~~~~~~D~~a~Y~~vieiDLs~leP~VA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g 320 (795)
++||++...+|++|.|+++++||||+|+|+||||++|||++||++++++|.+++..+.+.+|+..+.++.....+++|+|
T Consensus 382 ~~l~~~~~~~D~da~Y~~vieiDLs~veP~VAgP~~P~~~v~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 461 (936)
T PLN00070 382 NKMFVDYNEPQQERVYSSYLELDLEDVEPCISGPKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKEAQSKVAKFSFHG 461 (936)
T ss_pred ccccccccCCCCCCceeEEEEEEcccceEecCCCcChhcCcCHHHhhhhHHHhhcccccccccccchhhhhhhhhhhccC
Confidence 99999766689999999999999999999999999999999999999999998876555444433323233334567899
Q ss_pred CcccccCccEEEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCccCCceeEEEecCcHHHHHHHHHcCcHHHHHhcCcEEe
Q 003793 321 QPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLEVKPWVKTSLAPGSGVVTKYLQQSGLQKYLNQQGFHIV 400 (795)
Q Consensus 321 ~~~~l~~g~V~~a~IGSCTN~~~~dl~~aA~lLa~~a~~~G~kv~~~V~~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~i~ 400 (795)
+++.+++|+|++|||||||||||||+|+||++|+|||+++|+||+||||++|+|||++|++||+++||+++|+++||+|+
T Consensus 462 ~~~~l~~g~V~ia~IgSCTNts~~dl~~aA~lLakkA~~~Glkv~p~Vk~~vaPGS~~V~~~l~~~Gl~~~L~~aGf~v~ 541 (936)
T PLN00070 462 QPAELRHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLEVKPWIKTSLAPGSGVVTKYLLKSGLQKYLNQQGFHIV 541 (936)
T ss_pred CCCCcccCCEeEEEEECCCCCCcHHHHHHHHHHHHHHHhcCCccCCCccEEEeCCCHHHHHHHHHCCcHHHHHHcCCEEc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCccccCCCCCCChhhhhhcccCceeEEEEeccCCCCCCCCCCccCCceecChHHHHHHHhccccccCCCCCCCcCCC
Q 003793 401 GYGCTTCIGNSGDLDESVATAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVDIDFEKEPIGTGK 480 (795)
Q Consensus 401 ~~gCg~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~vaA~AlaG~I~~d~~~~plg~~~ 480 (795)
+||||+||||++++.++++++|.+|+++++||||+||||+||||+..+++|||||++||||||+|+|++|+++||+|+++
T Consensus 542 ~~GCg~CIG~~g~l~~~~~~~i~~~~l~~~~VsS~NRNFeGR~gp~~~~~yLaSP~lVaA~AlaG~i~~d~~~dplg~~~ 621 (936)
T PLN00070 542 GYGCTTCIGNSGELDESVASAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVDIDFEKEPIGTGK 621 (936)
T ss_pred CCccccccCCCCCCCchhhhccccCCeeEEEEeccCCCCCCCCCCCCCceEEcCHHHHHHHHHcCCcccCCCCCCCccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccccCCCChHHHHHHhhccCCcchhhhccccccCCCcccccccCCCCCccccCCCCccccCCCCCCCCCCCCCCC
Q 003793 481 DGKGVYFKDIWPSNEEIAEVVQSSVLPDMFKSTYEAITKGNPMWNQLSVPTSTLYSWDPNSTYIHEPPYFKNMTMEPPGP 560 (795)
Q Consensus 481 ~G~~v~l~di~P~~~ei~~~~~~~v~p~~~~~~y~~~~~~~~~w~~l~~~~~~~~~w~~~st~i~~pp~f~~~~~~~~~~ 560 (795)
+|++|||+||||+.+|+++++.+.++|++|.+.|++++.+++.|+.|++|++.+|+||++||||++||||++++..+.++
T Consensus 622 ~G~~v~l~diwP~~~ei~~~~~~~v~~~~f~~~y~~~~~g~~~w~~l~~p~~~~~~wd~~Styi~~pp~f~~~~~~~~~~ 701 (936)
T PLN00070 622 DGKDVFFRDIWPSNEEVAEVVQSSVLPDMFKSTYEAITKGNPMWNQLSVPSGTLYSWDPKSTYIHEPPYFKNMTMSPPGP 701 (936)
T ss_pred CCCEecccCCCCChHHHHHHHHccCCHHHhhhhhhhccCCccccccCCCCCCCcccCCCCcceeecCCCCCCcCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998888888
Q ss_pred CCCccceEEeecCCCCcccccccCCCCCCCChHhhHHHHcCCCccccccccCCCCChhhcccccccchhhhhhhcCCCCC
Q 003793 561 HGVKDAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLLERGVDRKDFNSYGSRRGNDEVMARGTFANIRIVNKLLNGEVG 640 (795)
Q Consensus 561 ~~i~~a~vL~~~gd~itTD~I~PaG~i~~~s~a~~~L~~~g~~~~~~n~yg~rr~n~evm~rg~F~n~r~~n~~~~~~~g 640 (795)
.+|++||||+++||+||||||||||+|+++||||+||+++|+.++|||+||+||||||||+||||+|+|++|+|++|++|
T Consensus 702 ~~i~~arvL~~lgD~iTTDHISPAG~i~~~spag~yL~~~gv~~~dfnsygsrRgN~evm~rgtFaNir~~N~~~~g~~g 781 (936)
T PLN00070 702 HGVKDAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRKDFNSYGSRRGNDEIMARGTFANIRIVNKLLKGEVG 781 (936)
T ss_pred cCccCcEEEEEECCCCcccccCCCCCCCCCChHHHHHHhcCCChhhccccccccCcchhhhceeccchhhhhhhcCCCcC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeecCCCcccccccHHHHHHHcCCceEEEeCCccCCCCchhhhhhhhhhcCeeEEEecchhHHHhhhhccCccccccc
Q 003793 641 PKTVHIPTGEKLYVFDAAMRYKAAGHETIVLAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCF 720 (795)
Q Consensus 641 ~~t~~~p~~~~~~v~~~a~~y~~~g~~~iiVaG~NfG~GSSRE~Aa~a~~~lGv~aVIA~SFarI~~~Nlin~Gilpl~~ 720 (795)
++|+|+|+|+.++|||+|++|+++|+++|||||+|||||||||||||++++||||||||+||+||||+||+|||||||+|
T Consensus 782 ~~t~~~p~g~~~~i~daA~~Y~~~g~p~iIvaG~nyG~GSSRe~AA~~~~~lGvkaVIA~SF~rIhrsNli~~GiLPL~f 861 (936)
T PLN00070 782 PKTVHIPTGEKLSVFDAAMKYKSEGHDTIILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCF 861 (936)
T ss_pred CeeEecCCCceeeHHHHHHHHHhcCCceEEEccCccCCCCcHHHHHHHHHHhCCcEEEEccHHHHHHhhhhhcCcceEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccchhhcccCCCceEEEecCCccccCCCCceEEEEcCCCeEEEEEecCCCHHHHHHHHhcChHHHHHHHhhcC
Q 003793 721 KPGEDADTLGLAGHERYTINLPNKVSEIRPGQDITVTTDTGKSFTCTVRFDTEVELAYFDHGGILPYVIRNLIKQ 795 (795)
Q Consensus 721 ~~~~~~~~l~~~~~~~~~idl~~~~~~~~~g~~v~v~~~~g~~~~~~~~~~~~~e~~~~~aGGll~~v~~~~~~~ 795 (795)
.++++++.+++.+++.++|++.+.+.+++||+.++++..+|++|.+.++++|+.|++||++||+||||+|++++|
T Consensus 862 ~~~~~~~~l~~~g~~~~~i~l~~~~~~l~p~~~~~v~~~~g~~~~~~~r~dt~~E~~~~~~GGiL~~v~r~~~~~ 936 (936)
T PLN00070 862 KSGEDADTLGLTGHERYTIDLPSNISEIKPGQDVTVTTDNGKSFTCTLRFDTEVELAYFDHGGILPYVIRNLIKQ 936 (936)
T ss_pred CCcccHHHHhcCCCceEEEeccccccccCCCCEEEEEeCCCeEEEEEEeCCCHHHHHHHHcCCHHHHHHHHHhhC
Confidence 999999999998889999998766667899998888777889999999999999999999999999999999876
No 2
>PTZ00092 aconitate hydratase-like protein; Provisional
Probab=100.00 E-value=1.8e-233 Score=2014.79 Aligned_cols=788 Identities=71% Similarity=1.168 Sum_probs=757.8
Q ss_pred ChHHHHhcCCCCCccCCCCceEEEccCCcccCCCCchhHHHHhHHHHHHHhhhhhhhhhhhccccCcceeeCCCCceecc
Q 003793 1 MRDAMKNLNSDPKKINPLVPVDLVVDHSVQVDVARSENAVQANMEFEFQRNQERFAFLKWGSSAFHNMLVVPPGSGIVHQ 80 (795)
Q Consensus 1 ~r~~~~~~g~~~~~~~P~~pv~lv~DH~v~~~~~~~~~a~~~n~~~e~~rn~e~~~fl~~~~~~~~~~~~~~pg~GI~Hq 80 (795)
|||+++++|+||.++||.+||+|++||+||++..++.+++..|+.+||+||+|||.|++|++++|.||+|+|||+|||||
T Consensus 110 mR~~~~~~g~d~~~inp~vpvdlviDHsvq~d~~~~~da~~~n~~~e~~rN~ery~fl~~~~~~f~~~~v~pPg~GI~HQ 189 (898)
T PTZ00092 110 MRDAMKRLGGDPAKINPLVPVDLVIDHSVQVDFSRSPDALELNQEIEFERNLERFEFLKWGSKAFKNLLIVPPGSGIVHQ 189 (898)
T ss_pred HHHHHHHcCCChhhcCCCCCcceecCCCCCCCCCCCcCHHHHHHHHHHHhhHHHhChHHhhhhhhcCCcccCCCCceece
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccceeecCCCccccCeEEecCCCCCccCccccccccccHHHHHHHHccCceeeeCCcEEEEEEeccCCCCCChhh
Q 003793 81 VNLEYLGRVVFNTDGILYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLTGKLRDGVTATD 160 (795)
Q Consensus 81 v~~E~~a~~v~~~~G~~~P~~ivGtDSHT~~~GalG~la~GvGg~e~~~~m~g~~~~~~vPevv~V~l~G~l~~gVtakD 160 (795)
|++||||++|++++|+++||++|||||||||+||||+|||||||+|++++|+|||+||++||||+|+|+|+|++||||||
T Consensus 190 V~lE~la~vv~~e~G~~~Pd~lvGtDSHT~~~GalG~la~GVGg~Eaeaamlgq~~~~~vPevvgV~LtG~L~~gVtakD 269 (898)
T PTZ00092 190 VNLEYLARVVFNKDGLLYPDSVVGTDSHTTMINGLGVLGWGVGGIEAEAVMLGQPISMVLPEVVGFKLTGKLSEHVTATD 269 (898)
T ss_pred echhhhccccccccCcccCCeEEecCCCCCCCCcccccEecccHHHHHHHHhcCcEEeeCCCEEEEEEEeecCCCcCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCccceEEEEecCcCCCCCcccchhhcccccccCceeeeeeCChHHHHHHHhcCCChhhHHHHHHHHHH
Q 003793 161 LVLTVTQMLRKHGVVGKFVEFYGEGMGQLPLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVSMIEEYLRA 240 (795)
Q Consensus 161 viL~i~~~l~~~G~~g~~vEf~G~gv~~Ls~~~R~TI~NMa~E~GA~~~~fp~D~~t~~yL~~~gr~~~~~~~~~~y~~~ 240 (795)
|||+|+++|+++|++||+|||+|||+++||+++|||||||++|+|||+||||+|++|++||+.|||++++++++++|.++
T Consensus 270 liL~i~~~L~~~G~vgk~vEF~G~gv~~LSv~dRaTIaNMa~E~GAt~gifp~De~T~~YL~~tgR~~~~~~lve~y~ka 349 (898)
T PTZ00092 270 LVLTVTSMLRKRGVVGKFVEFYGPGVKTLSLADRATIANMAPEYGATMGFFPIDEKTLDYLKQTGRSEEKVELIEKYLKA 349 (898)
T ss_pred HHHHHHHHhcccCccceEEEEEccccccCcHHHhhhhhccccccCceEEEecCChhHHHHHHhcccchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999899999999999
Q ss_pred hhhcccCCCCCCCCccceEEEEECCCccceeecCCCCCCccccCCcchhhHHhhhccccccCCCCCccccccccccccCC
Q 003793 241 NKMFVDYNEPEQERSYSSYLQLDLADVEPCISGPKRPHDRVPLKDMKADWHACLENQVGFKGFAVPKQEQDKVAKFSFHG 320 (795)
Q Consensus 241 ~~l~~~~~~~D~~a~Y~~vieiDLs~leP~VA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g 320 (795)
|++|++ +|++|.|+++++||||+|+|+||+|++|||++||++++++|.+++..+.+.+++.+++.+..+..++.++|
T Consensus 350 ~~l~~~---~D~da~Y~~vieiDLs~veP~VAgP~~P~~~v~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 426 (898)
T PTZ00092 350 NGLFRT---YAEQIEYSDVLELDLSTVVPSVAGPKRPHDRVPLSDLKKDFTACLSAPVGFKGFGIPEEKHEKKVKFTYKG 426 (898)
T ss_pred HHHhhc---CCCCCceeEEEEEEcccceEeccCCCChhhccCccccCCCHHHhhhhhhhhhccCCCccccccccccccCC
Confidence 999963 68899999999999999999999999999999999999999988765544445544333322223444678
Q ss_pred CcccccCccEEEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCccCCceeEEEecCcHHHHHHHHHcCcHHHHHhcCcEEe
Q 003793 321 QPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLEVKPWVKTSLAPGSGVVTKYLQQSGLQKYLNQQGFHIV 400 (795)
Q Consensus 321 ~~~~l~~g~V~~a~IGSCTN~~~~dl~~aA~lLa~~a~~~G~kv~~~V~~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~i~ 400 (795)
+++++.||+|++|||||||||||||+|+||++|||||+++|+||+||||++|+|||++|++||+++||+++|+++||+|+
T Consensus 427 ~~~~~~~g~V~~a~IgSCTN~s~~dl~~aA~lLakkAv~kG~kv~p~Vk~~v~PGS~~V~~~l~~~Gl~~~l~~aGf~i~ 506 (898)
T PTZ00092 427 KEYTLTHGSVVIAAITSCTNTSNPSVMLAAGLLAKKAVEKGLKVPPYIKTSLSPGSKVVTKYLEASGLLKYLEKLGFYTA 506 (898)
T ss_pred cccccCCCceeEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCCccCCCccEEEeCCCHHHHHHHHHcCcHHHHHHcCCEEe
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCccccCCCCCCChhhhhhcccCceeEEEEeccCCCCCCCCCCccCCceecChHHHHHHHhccccccCCCCCCCcCCC
Q 003793 401 GYGCTTCIGNSGDLDESVATAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVDIDFEKEPIGTGK 480 (795)
Q Consensus 401 ~~gCg~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~vaA~AlaG~I~~d~~~~plg~~~ 480 (795)
+||||+|+||+++++++++++|.++++++++|||+||||+||||+..+++|||||+|||||||+|+|++|+++||+|+++
T Consensus 507 ~~GCg~CiG~~g~l~~~~~~~i~~~~l~~~~VsS~NRNFeGR~g~~~~~~yLaSP~lvaA~AlaG~i~~d~~~dplg~~~ 586 (898)
T PTZ00092 507 GYGCMTCIGNSGDLDPEVSEAITNNDLVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGRVNIDFETEPLGSDK 586 (898)
T ss_pred CCccccccCcCCCCCchhhhhhccCCeeeeeecccCCCCCCCCCCCCCceEEcCHHHHHHHHHcCceecccccCCcccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccccCCCChHHHHHHhhccCCcchhhhccccccCCCcccccccCCCCCccccCCCCccccCCCCCCCCCCCCCCC
Q 003793 481 DGKGVYFKDIWPSNEEIAEVVQSSVLPDMFKSTYEAITKGNPMWNQLSVPTSTLYSWDPNSTYIHEPPYFKNMTMEPPGP 560 (795)
Q Consensus 481 ~G~~v~l~di~P~~~ei~~~~~~~v~p~~~~~~y~~~~~~~~~w~~l~~~~~~~~~w~~~st~i~~pp~f~~~~~~~~~~ 560 (795)
+|++|||+||||+.+|+++++..+++|++|.+.|..++.++++|+.|+++.+++|+||++||||++||||++++..+.+.
T Consensus 587 ~G~~v~l~diwP~~~ei~~~~~~~v~~~~f~~~y~~~~~~~~~w~~l~~~~~~~~~w~~~StyI~~pp~f~~~~~~~~~~ 666 (898)
T PTZ00092 587 TGKPVFLRDIWPSREEIQALEAKYVKPEMFKEVYSNITQGNKQWNELQVPKGKLYEWDEKSTYIHNPPFFQTMELEPPPI 666 (898)
T ss_pred CCCEeeeeCCCCChHHHHHHHHccCCHHHhhHhhhcccCCchhhhhccCCCCCccccCCCCCcccCCCCccccccCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998888888
Q ss_pred CCCccceEEeecCCCCcccccccCCCCCCCChHhhHHHHcCCCccccccccCCCCChhhcccccccchhhhhhhcCCCCC
Q 003793 561 HGVKDAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLLERGVDRKDFNSYGSRRGNDEVMARGTFANIRIVNKLLNGEVG 640 (795)
Q Consensus 561 ~~i~~a~vL~~~gd~itTD~I~PaG~i~~~s~a~~~L~~~g~~~~~~n~yg~rr~n~evm~rg~F~n~r~~n~~~~~~~g 640 (795)
.+|.+||||+++||+||||||||||+|+++||||+||+++|+.++||||||+||||||||+||||+|+|++|+|. |.+|
T Consensus 667 ~~i~~arvL~~~gD~iTTDHISPAG~i~~~spag~yL~~~gv~~~dfnsygsrRgN~~vm~RgtF~Niri~N~l~-g~~g 745 (898)
T PTZ00092 667 KSIENAYCLLNLGDSITTDHISPAGNIAKNSPAAKYLMERGVERKDFNTYGARRGNDEVMVRGTFANIRLINKLC-GKVG 745 (898)
T ss_pred CCccCcEEEEEECCCCcccccCCCCCCCCCChHHHHHHHcCCChhhccccccccCCchhhcceeccccceeeeec-cCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999 8899
Q ss_pred CceeecCCCcccccccHHHHHHHcCCceEEEeCCccCCCCchhhhhhhhhhcCeeEEEecchhHHHhhhhccCccccccc
Q 003793 641 PKTVHIPTGEKLYVFDAAMRYKAAGHETIVLAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCF 720 (795)
Q Consensus 641 ~~t~~~p~~~~~~v~~~a~~y~~~g~~~iiVaG~NfG~GSSRE~Aa~a~~~lGv~aVIA~SFarI~~~Nlin~Gilpl~~ 720 (795)
++|+++|+|+.++|||+|++|+++|.++|||||+|||||||||||||++++||||||||+||+||||+||+|||||||+|
T Consensus 746 ~~t~~~p~g~~~~i~daA~~Y~~~g~p~iivaG~nyG~GSSRe~AA~~~~~lGvraVIA~SF~rIh~~Nli~~GvlPL~f 825 (898)
T PTZ00092 746 PNTVHVPTGEKMSIYDAAEKYKQEGVPLIVLAGKEYGSGSSRDWAAKGPYLQGVKAVIAESFERIHRSNLVGMGILPLQF 825 (898)
T ss_pred CceEeCCCCcEecHHHHHHHHHHcCCceEEEccCccCCCCcHHHHHHHHHHhCCcEEEEecHHHHHHhhhhhcCcceeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccchhhcccCCCceEEEecCCccccCCCCceEEEEcCCCeEEEEEecCCCHHHHHHHHhcChHHHHHHHhhc
Q 003793 721 KPGEDADTLGLAGHERYTINLPNKVSEIRPGQDITVTTDTGKSFTCTVRFDTEVELAYFDHGGILPYVIRNLIK 794 (795)
Q Consensus 721 ~~~~~~~~l~~~~~~~~~idl~~~~~~~~~g~~v~v~~~~g~~~~~~~~~~~~~e~~~~~aGGll~~v~~~~~~ 794 (795)
.++++++.++++++++++|++... .++||++++++..+|++|.++++++|+.|++||++||+||||++++++
T Consensus 826 ~~~~~~~~l~~~~~~~i~i~~~~~--~l~p~~~v~v~~~~G~~~~~~~r~dt~~e~~y~~~GGiL~yv~~~~~~ 897 (898)
T PTZ00092 826 LNGENADSLGLTGKEQFSIDLNSG--ELKPGQDVTVKTDTGKTFDTILRIDTEVEVEYFKHGGILQYVLRKLVK 897 (898)
T ss_pred CCcccHHHhcCCCCeEEEEecccc--ccCCCCeEEEEeCCCcEEEEEEeCCCHHHHHHHHcCCHHHHHHHHHhc
Confidence 999999999999999999987322 589999998877788999999999999999999999999999999875
No 3
>KOG0452 consensus RNA-binding translational regulator IRP (aconitase superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.4e-235 Score=1897.20 Aligned_cols=790 Identities=73% Similarity=1.206 Sum_probs=779.9
Q ss_pred ChHHHHhcCCCCCccCCCCceEEEccCCcccCCCCchhHHHHhHHHHHHHhhhhhhhhhhhccccCcceeeCCCCceecc
Q 003793 1 MRDAMKNLNSDPKKINPLVPVDLVVDHSVQVDVARSENAVQANMEFEFQRNQERFAFLKWGSSAFHNMLVVPPGSGIVHQ 80 (795)
Q Consensus 1 ~r~~~~~~g~~~~~~~P~~pv~lv~DH~v~~~~~~~~~a~~~n~~~e~~rn~e~~~fl~~~~~~~~~~~~~~pg~GI~Hq 80 (795)
||||++++|+||++|||.+|+|||||||+|+|..++.+++++|+..||+||+|||.||||+.++|+|+.++|||.||+||
T Consensus 103 MRdAv~~lGgdp~KinP~cP~DLviDHSvQvDf~r~~~alqkN~~lEF~RNkERf~FlKWgs~af~NmlivPPGsGivHQ 182 (892)
T KOG0452|consen 103 MRDAVKNLGGDPEKINPLCPVDLVIDHSVQVDFARSADALQKNQELEFERNKERFTFLKWGSRAFDNMLIVPPGSGIVHQ 182 (892)
T ss_pred HHHHHHHcCCCHHHcCCCCCcceEeeeeeEEeeccCHHHHhhcceeeeecchhhhhhhhhhhHhhcceEEeCCCCceeEE
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccceeecCCCccccCeEEecCCCCCccCccccccccccHHHHHHHHccCceeeeCCcEEEEEEeccCCCCCChhh
Q 003793 81 VNLEYLGRVVFNTDGILYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLTGKLRDGVTATD 160 (795)
Q Consensus 81 v~~E~~a~~v~~~~G~~~P~~ivGtDSHT~~~GalG~la~GvGg~e~~~~m~g~~~~~~vPevv~V~l~G~l~~gVtakD 160 (795)
||+|||||+|+.+++++|||.+|||||||+|++|||++||||||+|++++|+|||+.|.+|+||+.+|+|+|.++||++|
T Consensus 183 vNLEYLaRvVF~~~~~lyPDSvVGTDSHtTMidGlGvlGWGVGGIEaEAvMLGqpiSmvlP~ViG~~L~Gkl~~~vTstD 262 (892)
T KOG0452|consen 183 VNLEYLARVVFESKDLLYPDSVVGTDSHTTMIDGLGVLGWGVGGIEAEAVMLGQPISMVLPEVIGYKLTGKLSPLVTSTD 262 (892)
T ss_pred eehhhhhheeeccCceecccccccccCcceeecccceeeccccceehhhhhhcCchheecccceeEEeccccCCCceeeh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCccceEEEEecCcCCCCCcccchhhcccccccCceeeeeeCChHHHHHHHhcCCChhhHHHHHHHHHH
Q 003793 161 LVLTVTQMLRKHGVVGKFVEFYGEGMGQLPLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVSMIEEYLRA 240 (795)
Q Consensus 161 viL~i~~~l~~~G~~g~~vEf~G~gv~~Ls~~~R~TI~NMa~E~GA~~~~fp~D~~t~~yL~~~gr~~~~~~~~~~y~~~ 240 (795)
++|+|+++||+.|++||||||+|+|+..||+.||+||+||+||||||.||||.|+.|++||+.|||+++.++.++.|+|+
T Consensus 263 lVLtiTk~LRq~GVvGKFVEF~G~Gva~LSiaDRaTIaNMcPEYGAt~gfFPvD~vtl~yl~~Tgrs~~~~~~i~~yLka 342 (892)
T KOG0452|consen 263 LVLTITKHLRQLGVVGKFVEFFGPGVAELSIADRATIANMCPEYGATMGFFPVDEVTLQYLKQTGRSEEKLDIIEKYLKA 342 (892)
T ss_pred hhhhHHHHHHHhccceeeEEEecCccceechhhhhhhhhcCccccceeeeeccchhHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccCCCCCCCCccceEEEEECCCccceeecCCCCCCccccCCcchhhHHhhhccccccCCCCCccccccccccccCC
Q 003793 241 NKMFVDYNEPEQERSYSSYLQLDLADVEPCISGPKRPHDRVPLKDMKADWHACLENQVGFKGFAVPKQEQDKVAKFSFHG 320 (795)
Q Consensus 241 ~~l~~~~~~~D~~a~Y~~vieiDLs~leP~VA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g 320 (795)
.++|+++..++.++.|.+++++||++|+|+|++|++|+++++|++|+++|+.||+++++++|+.++++.+++...+.|+|
T Consensus 343 ~~~f~~~~~~~q~p~yt~~l~l~L~~vvp~vSGPKRPhDrV~v~dmk~Df~scL~~~vgFKgFai~~e~q~~~v~f~~~g 422 (892)
T KOG0452|consen 343 VKMFRDYNDPSQDPVYTQVLELDLGTVVPSVSGPKRPHDRVAVSDMKADFHSCLDSKVGFKGFAIAPEAQSKSVEFQYDG 422 (892)
T ss_pred HhhhhhccCcccCcceeeEEEEecCceeeccCCCCCCccccchhhHHHHHHHhhcCcccccccccChhHhhceEEEEECC
Confidence 99999988888899999999999999999999999999999999999999999999999999999998888888999999
Q ss_pred CcccccCccEEEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCccCCceeEEEecCcHHHHHHHHHcCcHHHHHhcCcEEe
Q 003793 321 QPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLEVKPWVKTSLAPGSGVVTKYLQQSGLQKYLNQQGFHIV 400 (795)
Q Consensus 321 ~~~~l~~g~V~~a~IGSCTN~~~~dl~~aA~lLa~~a~~~G~kv~~~V~~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~i~ 400 (795)
++++|.||+|+||+|+||||+|||.+|.+|++|||+|++.|++|+||+|++++|||..|..||.++|++.+|.++||.|+
T Consensus 423 ~~~~l~HGsVVIAAitSCTNtsNPSVMlgAgLlAKkAv~~GL~v~PyikTSLsPGSgvVt~YL~~SGv~pyL~klGF~Iv 502 (892)
T KOG0452|consen 423 TTAKLKHGSVVIAAITSCTNTSNPSVMLGAGLLAKKAVELGLNVKPYIKTSLSPGSGVVTKYLSESGVLPYLEKLGFDIV 502 (892)
T ss_pred eeeEeccCcEEEEEEecccCCCCcHHhhhhhHHHHHHHhcCceecceeecccCCCCchhhhhhhhccchhHHHhcCceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCccccCCCCCCChhhhhhcccCceeEEEEeccCCCCCCCCCCccCCceecChHHHHHHHhccccccCCCCCCCcCCC
Q 003793 401 GYGCTTCIGNSGDLDESVATAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVDIDFEKEPIGTGK 480 (795)
Q Consensus 401 ~~gCg~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~vaA~AlaG~I~~d~~~~plg~~~ 480 (795)
+|||++||||+|+|.+++..+|++|++++++|+|+||||+||+||.+++||||||++|+||||+|++++|++++|+|+++
T Consensus 503 GYGC~TCiGNsgpl~e~V~~ai~~ndlV~~gvLSGNrNFEGRvhp~tRANYLASPpLvvaYaiaGtV~IDfe~eplg~~~ 582 (892)
T KOG0452|consen 503 GYGCMTCIGNSGPLDEAVVNAIEQNDLVAAGVLSGNRNFEGRVHPNTRANYLASPPLVVAYAIAGTVNIDFETEPLGVDP 582 (892)
T ss_pred ccccceeccCCCCCCHHHHHhhhcCCeEEEEEeecCCCccccccccchhhhccCchHHhhhhhcceeecceeccccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccccCCCChHHHHHHhhccCCcchhhhccccccCCCcccccccCCCCCccccCCCCccccCCCCCCCCCCCCCCC
Q 003793 481 DGKGVYFKDIWPSNEEIAEVVQSSVLPDMFKSTYEAITKGNPMWNQLSVPTSTLYSWDPNSTYIHEPPYFKNMTMEPPGP 560 (795)
Q Consensus 481 ~G~~v~l~di~P~~~ei~~~~~~~v~p~~~~~~y~~~~~~~~~w~~l~~~~~~~~~w~~~st~i~~pp~f~~~~~~~~~~ 560 (795)
+|+.+||+||||+++|++++++++|.|+||+++|+.|..+++.|+.|++|++.+|+||++||||++||||++|+..+..+
T Consensus 583 ~Gk~vfl~DIWPtr~Ev~~ve~~~Vip~mFk~~y~~I~~gn~~Wn~L~~p~~~Ly~Wd~~STYI~~ppfF~~mT~~~p~~ 662 (892)
T KOG0452|consen 583 DGKNVFLRDIWPTREEVAEVEEEHVIPSMFKEVYEKIELGNPDWNQLEVPSSKLYPWDPKSTYIKEPPFFEGMTRDLPGP 662 (892)
T ss_pred CCCeEEEeecCCCHHHHHHHHHhcccHHHHHHHHHHHhhcChhhhhccCCccceeccCCCCceecCCccccccccCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccceEEeecCCCCcccccccCCCCCCCChHhhHHHHcCCCccccccccCCCCChhhcccccccchhhhhhhcCCCCC
Q 003793 561 HGVKDAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLLERGVDRKDFNSYGSRRGNDEVMARGTFANIRIVNKLLNGEVG 640 (795)
Q Consensus 561 ~~i~~a~vL~~~gd~itTD~I~PaG~i~~~s~a~~~L~~~g~~~~~~n~yg~rr~n~evm~rg~F~n~r~~n~~~~~~~g 640 (795)
++|++|++|+.+||+||||||||||+|+++|||++||..||++++|||+||+||||++||.||||+|||+.|++.. +.|
T Consensus 663 ~~i~~A~~LLnlGDSvTTDHISPAGsI~r~SpAAr~L~~Rg~tprdFNsYGsRRGND~vMaRGTFANIrlvNkl~~-k~g 741 (892)
T KOG0452|consen 663 QSIEDAYCLLNLGDSVTTDHISPAGSIARTSPAARYLTERGLTPRDFNSYGSRRGNDAVMARGTFANIRLVNKLLS-KVG 741 (892)
T ss_pred ccccceeEEEeccCcccccccCCCccccccCHHHHHHHhcCCChhhccccccccCchhhhhcccchhhHHHHHHhc-ccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999985 899
Q ss_pred CceeecCCCcccccccHHHHHHHcCCceEEEeCCccCCCCchhhhhhhhhhcCeeEEEecchhHHHhhhhccCccccccc
Q 003793 641 PKTVHIPTGEKLYVFDAAMRYKAAGHETIVLAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCF 720 (795)
Q Consensus 641 ~~t~~~p~~~~~~v~~~a~~y~~~g~~~iiVaG~NfG~GSSRE~Aa~a~~~lGv~aVIA~SFarI~~~Nlin~Gilpl~~ 720 (795)
|.|.|+|+||.+.|||+|++|+++|.+.||+||+.||+|||||||||+|.+||||||||+||+||||+||++|||+||+|
T Consensus 742 P~TvHiPsge~ldvFdAA~~Y~~~g~p~iilaGkeYGsGsSRDWAAKGP~LlGvKAViaeS~ErIHrsnLvGmGIiPl~f 821 (892)
T KOG0452|consen 742 PKTVHIPSGEELDVFDAAERYKSEGIPLIILAGKEYGSGSSRDWAAKGPFLLGVKAVIAESYERIHRSNLVGMGIIPLQF 821 (892)
T ss_pred CceEecCCCCeecHhhHHHHHHhcCCceEEEeccccCCCCccchhhcCchhhhhHHHHHHHHHHHHhhccccceeeeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccchhhcccCCCceEEEecCCccccCCCCceEEEEcCCCeEEEEEecCCCHHHHHHHHhcChHHHHHHHhh
Q 003793 721 KPGEDADTLGLAGHERYTINLPNKVSEIRPGQDITVTTDTGKSFTCTVRFDTEVELAYFDHGGILPYVIRNLI 793 (795)
Q Consensus 721 ~~~~~~~~l~~~~~~~~~idl~~~~~~~~~g~~v~v~~~~g~~~~~~~~~~~~~e~~~~~aGGll~~v~~~~~ 793 (795)
..++++++|+++|.|.++|.+++. .++||+.++|+..+|+.|.+++|+|++.|+.|+++||||||+.|++.
T Consensus 822 ~~Ge~AdtLgLtG~E~yti~lP~~--~lkPgq~i~v~~dtGk~F~~~~rFdteVeltyy~~GGiL~y~iRk~~ 892 (892)
T KOG0452|consen 822 LPGEDADTLGLTGRERYTIHLPEN--ILKPGQDITVTTDTGKVFVCTLRFDTEVELTYYKNGGILNYMIRKLS 892 (892)
T ss_pred cCCCChhhcCcccceeEEEECCcc--cCCCCceEEEEecCCcEEEEEEEecceEEEEEEecCCcHHHHHhhcC
Confidence 999999999999999999999984 39999999999888999999999999999999999999999999874
No 4
>TIGR01341 aconitase_1 aconitate hydratase 1. This model represents one form of the TCA cycle enzyme aconitate hydratase, also known as aconitase and citrate hydro-lyase. It is found in bacteria, archaea, and eukaryotic cytosol. It has been shown to act also as an iron-responsive element binding protein in animals and may have the same role in other eukaryotes.
Probab=100.00 E-value=9e-232 Score=1996.87 Aligned_cols=782 Identities=65% Similarity=1.070 Sum_probs=746.5
Q ss_pred ChHHHHhcCCCCCccCCCCceEEEccCCcccCCCCchhHHHHhHHHHHHHhhhhhhhhhhhccccCcceeeCCCCceecc
Q 003793 1 MRDAMKNLNSDPKKINPLVPVDLVVDHSVQVDVARSENAVQANMEFEFQRNQERFAFLKWGSSAFHNMLVVPPGSGIVHQ 80 (795)
Q Consensus 1 ~r~~~~~~g~~~~~~~P~~pv~lv~DH~v~~~~~~~~~a~~~n~~~e~~rn~e~~~fl~~~~~~~~~~~~~~pg~GI~Hq 80 (795)
|||+++++|+||.++||.+||+|+|||+||++..++.+++..|+.++|+||+|||.||||++++|.+++|+|||+|||||
T Consensus 86 mrda~~~~G~d~~~inp~vPvdlviDHsv~~d~~~~~da~~~n~~~e~~rN~ery~fLkw~~~~f~~~~v~ppg~GI~Hq 165 (876)
T TIGR01341 86 MREAMKNLGGDPKKINPLVPVDLVIDHSVQVDYYGTEYALEFNMELEFERNLERYQFLKWAQKAFRNFRVVPPGTGIIHQ 165 (876)
T ss_pred HHHHHHHcCCCHHHcCCCCCcceEeCCCCCCCCCCCcCHHHHHHHHHHHhCHHHHhHHHHHHHHcccCCCCCCCCCeece
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccceeecCC----CccccCeEEecCCCCCccCccccccccccHHHHHHHHccCceeeeCCcEEEEEEeccCCCCC
Q 003793 81 VNLEYLGRVVFNTD----GILYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLTGKLRDGV 156 (795)
Q Consensus 81 v~~E~~a~~v~~~~----G~~~P~~ivGtDSHT~~~GalG~la~GvGg~e~~~~m~g~~~~~~vPevv~V~l~G~l~~gV 156 (795)
||+|+||++|+.++ |+++||++|||||||||+||||+|||||||+|++++|+||++||++||||+|+|+|+|++||
T Consensus 166 V~lE~la~~v~~~~~~g~g~a~PdtlVGtDSHT~t~GalG~la~GVGg~Eaeavmlgq~~~~~vPevvgV~LtG~L~~gV 245 (876)
T TIGR01341 166 VNLEYLATVVFKAEVDGELTAYPDSLVGTDSHTTMINGLGVLGWGVGGIEAEAAMLGQPYYMNVPEVIGVKLTGKLQEGV 245 (876)
T ss_pred echhhcccceeecccCCcceeccceeeecCCCCCCCCeecceEecccHHHHHHHHhCCcEEeeCCCEEEEEEEeecCCCc
Confidence 99999999999653 69999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHhcCccceEEEEecCcCCCCCcccchhhcccccccCceeeeeeCChHHHHHHHhcCCChhhHHHHHH
Q 003793 157 TATDLVLTVTQMLRKHGVVGKFVEFYGEGMGQLPLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVSMIEE 236 (795)
Q Consensus 157 takDviL~i~~~l~~~G~~g~~vEf~G~gv~~Ls~~~R~TI~NMa~E~GA~~~~fp~D~~t~~yL~~~gr~~~~~~~~~~ 236 (795)
|||||||+|+++||++|++||+|||+|||+++||+++|||||||++|+|||+||||+|++|++||+.+||++++++++++
T Consensus 246 tAkDliL~i~~~L~~~G~vgk~VEF~G~gv~~LS~~dRaTIaNMa~E~GAt~g~fp~De~T~~YL~~tgr~~~~~~l~~~ 325 (876)
T TIGR01341 246 TATDLVLTVTQMLRKKGVVGKFVEFFGPGLSELSLADRATIANMAPEYGATCGFFPIDDVTLQYLRLTGRDGDHVELVEK 325 (876)
T ss_pred CHHHHHHHHHHHhcccCcceEEEEEeCccccccCHhHHhhhhhcchhhCceEEEEcCChhHHHHHHhCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcccCCCCC-CCCccceEEEEECCCccceeecCCCCCCccccCCcchhhHHhhhccccccCCCCCccccccccc
Q 003793 237 YLRANKMFVDYNEPE-QERSYSSYLQLDLADVEPCISGPKRPHDRVPLKDMKADWHACLENQVGFKGFAVPKQEQDKVAK 315 (795)
Q Consensus 237 y~~~~~l~~~~~~~D-~~a~Y~~vieiDLs~leP~VA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 315 (795)
|+|+|+||+ +| ++|.|+++++||||+|||+||||++|||++||+++++.|.+++..+.+.+|+.+... ..+
T Consensus 326 y~k~~~l~~----~d~~~a~Y~~vieiDLs~veP~VAgP~~P~~~v~l~e~~~~~~~~~~~~~~~~~~~~~~~----~~~ 397 (876)
T TIGR01341 326 YARAQGLFY----DDSEEPRYTDVVELDLSDVEPSVAGPKRPQDRIPLREVKAKFSKELEKNGGDKGFTLRKE----PLK 397 (876)
T ss_pred HHHhccccc----CCCCCCceeEEEEEEcccceeeccCCCChhhccChhhcchhhhhHhhhhcccccccchhh----hhh
Confidence 999999995 45 789999999999999999999999999999999999998887755433223221111 111
Q ss_pred cccCCCcccccCccEEEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCccCCceeEEEecCcHHHHHHHHHcCcHHHHHhc
Q 003793 316 FSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLEVKPWVKTSLAPGSGVVTKYLQQSGLQKYLNQQ 395 (795)
Q Consensus 316 ~~~~g~~~~l~~g~V~~a~IGSCTN~~~~dl~~aA~lLa~~a~~~G~kv~~~V~~~v~PgS~~V~~~l~~~Gl~~~l~~a 395 (795)
..++|++..|.||+|++|||||||||||||+|+||++|+|||+++|+||+||||++|+|||++|++||+++||+++|+++
T Consensus 398 ~~~~g~~~~l~~g~I~~a~IgSCTN~s~~dl~~aA~lLakkA~~kG~kv~p~Vk~~v~PGS~~V~~~l~~~Gl~~~L~~a 477 (876)
T TIGR01341 398 KKVNGQNKQLEDGAVVIAAITSCTNTSNPSVMLGAGLLAKKAVELGLKVPPYVKTSLAPGSKVVTDYLAESGLLPYLEEL 477 (876)
T ss_pred eeccCcceecCCCcEEEEEeeCCCCCCcHhHHHHHHHHHHHHHhcCCccCCCccEEEeCCCHHHHHHHHHCCcHHHHHHc
Confidence 22468888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEeccCCccccCCCCCCChhhhhhcccCceeEEEEeccCCCCCCCCCCccCCceecChHHHHHHHhccccccCCCCCC
Q 003793 396 GFHIVGYGCTTCIGNSGDLDESVATAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVDIDFEKEP 475 (795)
Q Consensus 396 G~~i~~~gCg~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~vaA~AlaG~I~~d~~~~p 475 (795)
||+|++||||+|+||+|+++++++++|.+++++.+||||+||||+||||+..+++|||||+|||||||+|+|++|+++||
T Consensus 478 Gf~i~~~GCg~CiG~~g~l~~~~e~ai~~~~l~~~~VsS~NRNFeGR~g~~~~~~yLaSP~lVaA~AlaG~I~~d~~~dp 557 (876)
T TIGR01341 478 GFNLVGYGCTTCIGNSGPLPKYVEEAIKKNDLEVYAVLSGNRNFEGRIHPLVKGNYLASPPLVVAYALAGNIDINLYTEP 557 (876)
T ss_pred CCEEecCCccccccCCCCCCcchhcccccCCceEEEEeccCCCCCCCCCCCCCceEECCHHHHHHHHHhCCcccCccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCCCCCCccccccCCCChHHHHHHhhccCCcchhhhccccccCCCcccccccCCCCCccccCCCCccccCCCCCCCCCC
Q 003793 476 IGTGKDGKGVYFKDIWPSNEEIAEVVQSSVLPDMFKSTYEAITKGNPMWNQLSVPTSTLYSWDPNSTYIHEPPYFKNMTM 555 (795)
Q Consensus 476 lg~~~~G~~v~l~di~P~~~ei~~~~~~~v~p~~~~~~y~~~~~~~~~w~~l~~~~~~~~~w~~~st~i~~pp~f~~~~~ 555 (795)
+|.+++|++|||+||||+.+|+++++.+.++++||++.|.+++.+++.|+.|++|+++.|+|+++||||++||||++++.
T Consensus 558 lg~~~~G~~v~l~diwP~~~ei~~~~~~~v~~~~f~~~y~~~~~g~~~w~~l~~~~~~~~~w~~~StyI~~pp~f~~~~~ 637 (876)
T TIGR01341 558 IGTDKDGKPVYLRDIWPSNKEIAAYVNMAVKPEMFKKEYENIFEGNERWNSIKTPSGDTYSWDEKSTYIRLPPFFEEMKQ 637 (876)
T ss_pred cccCCCCCeeeccCCCCChHHHHHHHHhcCCHHHcccccccccCCcccccccCCCCCCccccCCCCCcccCCCCCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCCCCCCccceEEeecCCCCcccccccCCCCCCCChHhhHHHHcCCCccccccccCCCCChhhcccccccchhhhhhhc
Q 003793 556 EPPGPHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLLERGVDRKDFNSYGSRRGNDEVMARGTFANIRIVNKLL 635 (795)
Q Consensus 556 ~~~~~~~i~~a~vL~~~gd~itTD~I~PaG~i~~~s~a~~~L~~~g~~~~~~n~yg~rr~n~evm~rg~F~n~r~~n~~~ 635 (795)
++.++.+|.+||+|+++||+||||||||||+|+++||||+||+++|++++||||||+||||||||+||||+|+|+.|+|+
T Consensus 638 ~~~~~~~i~~arvL~~lgD~iTTDHISPAG~i~~~spag~yL~~~gv~~~dfnsygsrRgN~evm~rgtFanir~~N~l~ 717 (876)
T TIGR01341 638 DPEEVEDIKGARILLLLGDSITTDHISPAGSITKDSPAGKYLQERGVSRRDFNSYGSRRGNHEVMMRGTFANIRIKNLMV 717 (876)
T ss_pred CCCCCCCccCCEEEEEECCCCcccccCCCCCCCCCChHHHHHHHcCCChhhcccccccccCHHHHHHhhcccchhhhhcc
Confidence 88888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCceeecCCCcccccccHHHHHHHcCCceEEEeCCccCCCCchhhhhhhhhhcCeeEEEecchhHHHhhhhccCcc
Q 003793 636 NGEVGPKTVHIPTGEKLYVFDAAMRYKAAGHETIVLAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGI 715 (795)
Q Consensus 636 ~~~~g~~t~~~p~~~~~~v~~~a~~y~~~g~~~iiVaG~NfG~GSSRE~Aa~a~~~lGv~aVIA~SFarI~~~Nlin~Gi 715 (795)
+|.+|++|+|+|+|+.++|||+|++|+++|.++|||||+|||||||||||+|++++|||+||||+||+||||+||+||||
T Consensus 718 ~g~egg~t~~~p~g~~~~i~daA~~Y~~~g~p~iivag~~yG~GSSRe~Aa~~~~~lGv~avia~sf~rI~~~N~~~~Gi 797 (876)
T TIGR01341 718 KGKEGGYTVHFPDGKVASVYDAAMQYKKEGTPLVVIAGKEYGSGSSRDWAAKGTKLLGVKAVIAESFERIHRSNLVGMGV 797 (876)
T ss_pred cCccCceeEecCCCccccHHHHHHHHHhcCCceEEEccCccCCCCcHHHHHHHHHHhCCcEEEEccHHHHHHhhHhhcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCccchhhcccCCCceEEEecCCccccCCCCceEEEEc--CCC--eEEEEEecCCCHHHHHHHHhcChHHHHHHH
Q 003793 716 IPLCFKPGEDADTLGLAGHERYTINLPNKVSEIRPGQDITVTT--DTG--KSFTCTVRFDTEVELAYFDHGGILPYVIRN 791 (795)
Q Consensus 716 lpl~~~~~~~~~~l~~~~~~~~~idl~~~~~~~~~g~~v~v~~--~~g--~~~~~~~~~~~~~e~~~~~aGGll~~v~~~ 791 (795)
|||+|+++++|++|+++++|+++|...+ +++||++++++. .+| ++|.+.++++|+.|++||++||+||||+|+
T Consensus 798 lpl~~~~~~~~~~l~l~g~e~~~i~~~~---~l~pg~~v~v~~~~~~g~~~~~~~~~r~dt~~E~~~~~~GGiL~yv~r~ 874 (876)
T TIGR01341 798 IPLQFPQGEDAETLGLTGDETIDIDGIK---DLKPGKEVTVTFTNSKGEKITFKCVLRIDTEVELDYYKHGGILQYVLRK 874 (876)
T ss_pred ceEecCCCCCHHHhCCCCCCeEEEcCcc---ccCCCCEEEEEEEcCCCCEEEEEEEEecCCHHHHHHHHcCCHHHHHHHh
Confidence 9999999999999999999999985332 578998887753 577 789999999999999999999999999999
Q ss_pred hh
Q 003793 792 LI 793 (795)
Q Consensus 792 ~~ 793 (795)
++
T Consensus 875 ~~ 876 (876)
T TIGR01341 875 FL 876 (876)
T ss_pred hC
Confidence 74
No 5
>PRK12881 acnA aconitate hydratase; Provisional
Probab=100.00 E-value=1.4e-230 Score=1992.87 Aligned_cols=776 Identities=61% Similarity=1.019 Sum_probs=743.0
Q ss_pred ChHHHHhcCCCCCccCCCCceEEEccCCcccCCCCchhHHHHhHHHHHHHhhhhhhhhhhhccccCcceeeCCCCceecc
Q 003793 1 MRDAMKNLNSDPKKINPLVPVDLVVDHSVQVDVARSENAVQANMEFEFQRNQERFAFLKWGSSAFHNMLVVPPGSGIVHQ 80 (795)
Q Consensus 1 ~r~~~~~~g~~~~~~~P~~pv~lv~DH~v~~~~~~~~~a~~~n~~~e~~rn~e~~~fl~~~~~~~~~~~~~~pg~GI~Hq 80 (795)
|||+++++|+||+++||.+||+++|||+||++..++.+++.+|+.++|+||+|||.||||++++|.+++|+|||+|||||
T Consensus 103 mr~a~~~~G~d~~~~~p~vpvdlviDHsv~~d~~~~~da~~~n~~~e~~rN~ery~fLkw~~~~f~~~~v~pPg~GI~Hq 182 (889)
T PRK12881 103 MRDAAAEAGGDPAKINPLVPVDLVVDHSVAVDYFGQKDALDLNMKIEFQRNAERYQFLKWGMQAFDNFRVVPPGTGIMHQ 182 (889)
T ss_pred HHHHHHHcCCChhhcCCCCCcceEeCCCCccCCCCCCCHHHHHHHHHHHhhHHHhChHHHHHHHccCCCCCCCCCCccce
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccceeecC----CCccccCeEEecCCCCCccCccccccccccHHHHHHHHccCceeeeCCcEEEEEEeccCCCCC
Q 003793 81 VNLEYLGRVVFNT----DGILYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLTGKLRDGV 156 (795)
Q Consensus 81 v~~E~~a~~v~~~----~G~~~P~~ivGtDSHT~~~GalG~la~GvGg~e~~~~m~g~~~~~~vPevv~V~l~G~l~~gV 156 (795)
|++|+||++|+.+ .|+++||++|||||||||+||||+|||||||+|++++|+||++||++||||+|+|+|+|++||
T Consensus 183 V~lE~la~vv~~~~~~~~g~~~PdtlVGtDSHT~~~galG~lg~GVGg~Eaeaamlgq~~~~~vPevigV~l~G~L~~gV 262 (889)
T PRK12881 183 VNLEYLARVVHTKEDDGDTVAYPDTLVGTDSHTTMINGIGVLGWGVGGIEAEAVMLGQPVYMLIPDVVGVELTGKLREGV 262 (889)
T ss_pred EchhhhcccceecccCCcceecCCeEEecCCCCCCCccccceEecccHHHHHHHHhCCcEEeeCCCEEEEEEEeecCCCc
Confidence 9999999999965 379999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHhcCccceEEEEecCcCCCCCcccchhhcccccccCceeeeeeCChHHHHHHHhcCCChhhHHHHHH
Q 003793 157 TATDLVLTVTQMLRKHGVVGKFVEFYGEGMGQLPLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVSMIEE 236 (795)
Q Consensus 157 takDviL~i~~~l~~~G~~g~~vEf~G~gv~~Ls~~~R~TI~NMa~E~GA~~~~fp~D~~t~~yL~~~gr~~~~~~~~~~ 236 (795)
|||||||+|+++||++|++||+|||+||||++||+++|||||||++|||||+||||+|++|++||+.|||++++++++++
T Consensus 263 tAkDliL~i~~~L~~~G~vgk~vEF~G~gv~~LS~~dRaTIaNMa~E~GAt~g~fp~De~T~~YL~~tgr~~~~v~l~e~ 342 (889)
T PRK12881 263 TATDLVLTVTEMLRKEGVVGKFVEFFGEGVASLTLGDRATIANMAPEYGATMGFFPVDEQTLDYLRLTGRTEAQIALVEA 342 (889)
T ss_pred CHHHHHHHHHHHhcccccceEEEEEECccccccCHHHHHHHhcccHhhCceEEEecCChhHHHHHHhcccchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcccCCCCCCCCccceEEEEECCCccceeecCCCCCCccccCCcchhhHHhhhccccccCCCCCcccccccccc
Q 003793 237 YLRANKMFVDYNEPEQERSYSSYLQLDLADVEPCISGPKRPHDRVPLKDMKADWHACLENQVGFKGFAVPKQEQDKVAKF 316 (795)
Q Consensus 237 y~~~~~l~~~~~~~D~~a~Y~~vieiDLs~leP~VA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 316 (795)
|.|+|++|++ +|++|.|+++++||||+|||+||||++|||++||++++++|.+++..+...+++
T Consensus 343 y~ka~~l~~~---~d~~a~Y~~vieiDLs~veP~vAgP~~P~~~v~l~e~~~~~~~~~~~~~~~~~~------------- 406 (889)
T PRK12881 343 YAKAQGLWGD---PKAEPRYTRTLELDLSTVAPSLAGPKRPQDRIALGNVKSAFSDLFSKPVAENGF------------- 406 (889)
T ss_pred HHHHHHhhcC---cCCCCceeEEEEEEccceeEeccCCCChhhCcCchhcCcCHHHHhhhHHHhhhh-------------
Confidence 9999999974 688999999999999999999999999999999999999998877433222221
Q ss_pred cc---CCCcccccCccEEEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCccCCceeEEEecCcHHHHHHHHHcCcHHHHH
Q 003793 317 SF---HGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLEVKPWVKTSLAPGSGVVTKYLQQSGLQKYLN 393 (795)
Q Consensus 317 ~~---~g~~~~l~~g~V~~a~IGSCTN~~~~dl~~aA~lLa~~a~~~G~kv~~~V~~~v~PgS~~V~~~l~~~Gl~~~l~ 393 (795)
.| .+....+.||+|++|||||||||||||+|+||++|||||+++|+||+||||++|+|||++|++||+++||+++|+
T Consensus 407 ~~~~~~~~~~~l~~g~V~~a~IgSCTNts~~dl~~aA~lLak~A~~kG~kv~p~Vk~~v~PGS~~V~~~l~~~Gl~~~l~ 486 (889)
T PRK12881 407 AKKAQTSNGVDLPDGAVAIAAITSCTNTSNPSVLIAAGLLAKKAVERGLTVKPWVKTSLAPGSKVVTEYLERAGLLPYLE 486 (889)
T ss_pred hcccccCCCccccCccEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhCCCccCCCccEEEeCCCHHHHHHHHHcCcHHHHH
Confidence 12 234557889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCcEEeccCCccccCCCCCCChhhhhhcccCceeEEEEeccCCCCCCCCCCccCCceecChHHHHHHHhccccccCCCC
Q 003793 394 QQGFHIVGYGCTTCIGNSGDLDESVATAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVDIDFEK 473 (795)
Q Consensus 394 ~aG~~i~~~gCg~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~vaA~AlaG~I~~d~~~ 473 (795)
++||+|++||||+|+||+|++.++++++|++|++++++|||+||||+||||+..+++|||||+|||||||+|+|++|+++
T Consensus 487 ~aGf~i~~~GCg~CiG~~g~l~~~~~~~i~~g~~~~~~VsS~NRNFeGR~g~~~~~~yLaSP~lvaA~AlaG~i~~d~~~ 566 (889)
T PRK12881 487 KLGFGIVGYGCTTCIGNSGPLTPEIEQAITKNDLVAAAVLSGNRNFEGRIHPNIKANFLASPPLVVAYALAGTVRRDLMT 566 (889)
T ss_pred HcCCEEeCCcchhhhccCCCCCchhhhhcccCCceeEEEeecCCCCCCCCCCCCCceEECCHHHHHHHHhcCceecCCCC
Confidence 99999999999999999999999999999999998889999999999999999999999999999999999999999999
Q ss_pred CCCcCCCCCCccccccCCCChHHHHHHhhccCCcchhhhccccccCCCcccccccCCCCCccccCCCCccccCCCCCCCC
Q 003793 474 EPIGTGKDGKGVYFKDIWPSNEEIAEVVQSSVLPDMFKSTYEAITKGNPMWNQLSVPTSTLYSWDPNSTYIHEPPYFKNM 553 (795)
Q Consensus 474 ~plg~~~~G~~v~l~di~P~~~ei~~~~~~~v~p~~~~~~y~~~~~~~~~w~~l~~~~~~~~~w~~~st~i~~pp~f~~~ 553 (795)
||+|++++|++|||+||||+.+|+++++.+.+++++|.+.|++++.+++.|++|++|.+++|+||++||||++||||+++
T Consensus 567 dplg~~~~G~~v~l~diwP~~~ei~~~~~~~v~~~~f~~~y~~~~~~~~~w~~l~~~~~~~~~wd~~StyI~~pPff~~~ 646 (889)
T PRK12881 567 EPLGKGKDGRPVYLKDIWPSSAEIDALVAFAVDPEDFRKNYAEVFKGSELWAAIEAPDGPLYDWDPKSTYIRRPPFFDFS 646 (889)
T ss_pred CCcccCCCCCEeeccCCCCChHHHHHHHHcCCCHHHhhhhhhhhcCCccccccccCCCCCeeccCCCCCcccCCCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCccceEEeecCCCCcccccccCCCCCCCChHhhHHHHcCCCccccccccCCCCChhhcccccccchhhhhh
Q 003793 554 TMEPPGPHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLLERGVDRKDFNSYGSRRGNDEVMARGTFANIRIVNK 633 (795)
Q Consensus 554 ~~~~~~~~~i~~a~vL~~~gd~itTD~I~PaG~i~~~s~a~~~L~~~g~~~~~~n~yg~rr~n~evm~rg~F~n~r~~n~ 633 (795)
...+.++.+|.+||+|+++||+||||||||||+|+++||||+||+++|+.++||||||+||||||||+||||+|+|+.|+
T Consensus 647 ~~~~~~~~~i~~arvL~~~gD~iTTDHISPAG~i~~~spag~yL~~~gv~~~dfnsyg~rRgN~evm~rgtF~nir~~N~ 726 (889)
T PRK12881 647 MGPAASIATVKGARPLAVLGDSITTDHISPAGAIKADSPAGKYLKENGVPKADFNSYGSRRGNHEVMMRGTFANVRIKNL 726 (889)
T ss_pred ccCCCCCCCccCCEEEEEECCCCcccccCcCCCCCCCCchHHHHHHcCCChhhcccccccccchHHhhhhccccCcccce
Confidence 88888889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCceeecCCCcccccccHHHHHHHcCCceEEEeCCccCCCCchhhhhhhhhhcCeeEEEecchhHHHhhhhccC
Q 003793 634 LLNGEVGPKTVHIPTGEKLYVFDAAMRYKAAGHETIVLAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGM 713 (795)
Q Consensus 634 ~~~~~~g~~t~~~p~~~~~~v~~~a~~y~~~g~~~iiVaG~NfG~GSSRE~Aa~a~~~lGv~aVIA~SFarI~~~Nlin~ 713 (795)
|.++.+|++|+|+|+|+.++|||+|++|+++|+++|||||+|||||||||||||++++|||+||||+||+||||+||+||
T Consensus 727 l~~~~egg~t~~~p~g~~~~i~daA~~y~~~g~p~iIvaG~nyG~GSSRe~Aa~~~~~lGv~aVIA~SFaRIh~~Nli~~ 806 (889)
T PRK12881 727 MIPGKEGGLTLHQPSGEVLSIYDAAMRYQAAGTPLVVIAGEEYGTGSSRDWAAKGTRLLGVKAVIAESFERIHRSNLVGM 806 (889)
T ss_pred eccccccCeeEeCCCCcEeeHHHHHHHHHhcCCceEEEecCccCCCCcHHHHHHHHHHhCCcEEEEecHHHHHHhhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCccchhhcccCCCceEEEecCCccccCCCCceEEEE--cCCC--eEEEEEecCCCHHHHHHHHhcChHHHHH
Q 003793 714 GIIPLCFKPGEDADTLGLAGHERYTINLPNKVSEIRPGQDITVT--TDTG--KSFTCTVRFDTEVELAYFDHGGILPYVI 789 (795)
Q Consensus 714 Gilpl~~~~~~~~~~l~~~~~~~~~idl~~~~~~~~~g~~v~v~--~~~g--~~~~~~~~~~~~~e~~~~~aGGll~~v~ 789 (795)
|||||+|+++.++++|+++++++++|+...+ .+.||++++++ ..+| .+|.+.++++|+.|++|+++||+|||++
T Consensus 807 GilpL~f~~~~~~~~l~l~g~d~i~I~~~~~--~i~p~~~v~v~~~~~~G~~~~~~~~~r~dt~~e~e~~~aGGiL~yv~ 884 (889)
T PRK12881 807 GVLPLQFKGGDSRQSLGLTGGETFDIEGLPG--EIKPRQDVTLVIHRADGSTERVPVLCRIDTPIEVDYYKAGGILPYVL 884 (889)
T ss_pred CcceEEeCCccchhhcCcCCCCEEEEeCCcc--ccCCCCeEEEEEEeCCCCEEEEEEEeccCCHHHHHHHHcCCHHHHHH
Confidence 9999999999999999999999999976542 58899888764 3566 5788888888999999999999999999
Q ss_pred HHhhc
Q 003793 790 RNLIK 794 (795)
Q Consensus 790 ~~~~~ 794 (795)
+++++
T Consensus 885 ~~~~~ 889 (889)
T PRK12881 885 RQLLA 889 (889)
T ss_pred HHhhC
Confidence 99863
No 6
>PRK09277 aconitate hydratase; Validated
Probab=100.00 E-value=4.2e-230 Score=1984.85 Aligned_cols=778 Identities=64% Similarity=1.069 Sum_probs=746.5
Q ss_pred ChHHHHhcCCCCCccCCCCceEEEccCCcccCCCCchhHHHHhHHHHHHHhhhhhhhhhhhccccCcceeeCCCCceecc
Q 003793 1 MRDAMKNLNSDPKKINPLVPVDLVVDHSVQVDVARSENAVQANMEFEFQRNQERFAFLKWGSSAFHNMLVVPPGSGIVHQ 80 (795)
Q Consensus 1 ~r~~~~~~g~~~~~~~P~~pv~lv~DH~v~~~~~~~~~a~~~n~~~e~~rn~e~~~fl~~~~~~~~~~~~~~pg~GI~Hq 80 (795)
|||+++++|+||.++||.+||++|+||+||++..++.+++..|+.++|+||+|||.||||++++|.+++|+|||+|||||
T Consensus 104 mr~a~~~~G~dp~~i~p~vpvdlviDHsv~~d~~~~~da~~~n~~~e~~rN~er~~fLkw~~~~f~~~~v~pPg~GI~Hq 183 (888)
T PRK09277 104 MRDAIADLGGDPAKINPLVPVDLVIDHSVQVDYFGTPDAFEKNVELEFERNEERYQFLKWGQKAFDNFRVVPPGTGICHQ 183 (888)
T ss_pred HHHHHHHcCCChhhcCCCCCeEEEeCCCCcCCCCCCcCHHHHHHHHHHHhCHHHHhHHHHHHHHhcCCCCCCCCCCccce
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccceeecC-CC--ccccCeEEecCCCCCccCccccccccccHHHHHHHHccCceeeeCCcEEEEEEeccCCCCCC
Q 003793 81 VNLEYLGRVVFNT-DG--ILYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLTGKLRDGVT 157 (795)
Q Consensus 81 v~~E~~a~~v~~~-~G--~~~P~~ivGtDSHT~~~GalG~la~GvGg~e~~~~m~g~~~~~~vPevv~V~l~G~l~~gVt 157 (795)
|++||||+||+.+ +| +++|+++|||||||||+||||+|||||||+|++++|+||++||++||||+|+|+|+|++|||
T Consensus 184 V~lE~la~vv~~~~~G~~~~~PdtlVGtDSHT~t~GalG~la~GVGg~Eaeaam~g~~~~~~vPevvgV~LtG~L~~gVt 263 (888)
T PRK09277 184 VNLEYLAPVVWTREDGELVAYPDTLVGTDSHTTMINGLGVLGWGVGGIEAEAAMLGQPSSMLIPEVVGVKLTGKLPEGVT 263 (888)
T ss_pred echhhcccceeecCCCceeeccceEEecCCCCCCCCcccccEEccCHHHHHHHHhcCcEEeeCCCEEEEEEEeecCCCcc
Confidence 9999999999976 78 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHhcCccceEEEEecCcCCCCCcccchhhcccccccCceeeeeeCChHHHHHHHhcCCChhhHHHHHHH
Q 003793 158 ATDLVLTVTQMLRKHGVVGKFVEFYGEGMGQLPLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVSMIEEY 237 (795)
Q Consensus 158 akDviL~i~~~l~~~G~~g~~vEf~G~gv~~Ls~~~R~TI~NMa~E~GA~~~~fp~D~~t~~yL~~~gr~~~~~~~~~~y 237 (795)
||||||+|+++||++|++||+|||+|||+++||+++|||||||++|+|||+||||+|++|++||+.|||++++++++++|
T Consensus 264 AkDliL~i~~~L~~~G~vgk~vEF~G~gv~~LS~~dRaTIaNMa~E~GAt~g~fp~De~T~~YL~~tgr~~~~v~~~e~y 343 (888)
T PRK09277 264 ATDLVLTVTEMLRKKGVVGKFVEFFGEGLASLSLADRATIANMAPEYGATCGFFPIDEETLDYLRLTGRDEEQVALVEAY 343 (888)
T ss_pred HhHHHHHHHHHhcccCcccEEEEEECcccccCCHHHHHHHhccchhhCceEEEecCChhHHHHHHhcCCChHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcccCCCCCCCCccceEEEEECCCccceeecCCCCCCccccCCcchhhHHhhhccccccCCCCCccccccccccc
Q 003793 238 LRANKMFVDYNEPEQERSYSSYLQLDLADVEPCISGPKRPHDRVPLKDMKADWHACLENQVGFKGFAVPKQEQDKVAKFS 317 (795)
Q Consensus 238 ~~~~~l~~~~~~~D~~a~Y~~vieiDLs~leP~VA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 317 (795)
.|++++|+. +|++|.|+++++||||+|+|+||||++|||++||+++++.|.++++. +.+++ ..+.+
T Consensus 344 ~ka~~~~~~---~D~~a~Y~~vieiDLs~leP~VAgP~~P~~~v~v~e~~~~~~~~~~~--~~~~~---------~~~~~ 409 (888)
T PRK09277 344 AKAQGLWRD---PLEEPVYTDVLELDLSTVEPSLAGPKRPQDRIPLSDVKEAFAKSAEL--GVQGF---------GLDEA 409 (888)
T ss_pred HHHHhhhcc---CCCCCCEEEEEEEEccceeEecCCCCCcccCcChhhcCcchhhhchh--hhhhh---------hhhhh
Confidence 999999962 58899999999999999999999999999999999999887765421 11111 12334
Q ss_pred cCCCcccccCccEEEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCccCCceeEEEecCcHHHHHHHHHcCcHHHHHhcCc
Q 003793 318 FHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLEVKPWVKTSLAPGSGVVTKYLQQSGLQKYLNQQGF 397 (795)
Q Consensus 318 ~~g~~~~l~~g~V~~a~IGSCTN~~~~dl~~aA~lLa~~a~~~G~kv~~~V~~~v~PgS~~V~~~l~~~Gl~~~l~~aG~ 397 (795)
++|....|.||+|++|||||||||||||+|+||++|||||+++|+||+||||++|+|||++|++||+++||+++|+++||
T Consensus 410 ~~g~~~~l~~g~V~~a~IGSCTN~s~~dl~~AA~lLakkA~~kG~kv~p~Vk~~v~PGS~~V~~~l~~~Gl~~~l~~aGf 489 (888)
T PRK09277 410 EEGEDYELPDGAVVIAAITSCTNTSNPSVMIAAGLLAKKAVEKGLKVKPWVKTSLAPGSKVVTDYLEKAGLLPYLEALGF 489 (888)
T ss_pred hcCCCccccCCceEEEEEeCCCCCCcHhHHHHHHHHHHHHHhcCCccCCCeeEEEeCCCHHHHHHHHHCChHHHHHHcCC
Confidence 67888899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccCCccccCCCCCCChhhhhhcccCceeEEEEeccCCCCCCCCCCccCCceecChHHHHHHHhccccccCCCCCCCc
Q 003793 398 HIVGYGCTTCIGNSGDLDESVATAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVDIDFEKEPIG 477 (795)
Q Consensus 398 ~i~~~gCg~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~vaA~AlaG~I~~d~~~~plg 477 (795)
+|++||||+|+||++++.++++++|.+++++++||||+||||+||||+..+++|||||+|||||||+|+|++|+++||+|
T Consensus 490 ~i~~~GCg~CiG~~g~l~~~~~~~i~~~e~~~~~VsS~NRNFeGR~g~~~~~~yLaSP~lvaA~AlaG~I~~d~~~dplg 569 (888)
T PRK09277 490 NLVGYGCTTCIGNSGPLPPEIEKAINDNDLVVTAVLSGNRNFEGRIHPLVKANYLASPPLVVAYALAGTVDIDLEKDPLG 569 (888)
T ss_pred EEeCCCccccccCCCCCCchhhhhcccCCceeEEEeccCCCCCCCCCCCCCceEEcCHHHHHHHHHcCccccCCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCccccccCCCChHHHHHHhhccCCcchhhhccccccCCCcccccccCCCCCccccCCCCccccCCCCCCCCCCCC
Q 003793 478 TGKDGKGVYFKDIWPSNEEIAEVVQSSVLPDMFKSTYEAITKGNPMWNQLSVPTSTLYSWDPNSTYIHEPPYFKNMTMEP 557 (795)
Q Consensus 478 ~~~~G~~v~l~di~P~~~ei~~~~~~~v~p~~~~~~y~~~~~~~~~w~~l~~~~~~~~~w~~~st~i~~pp~f~~~~~~~ 557 (795)
++++|++|||+||||+.+|+++++.+.+++++|.+.|+.++.+++.|+.++++.++.|+|+++||||++||||++++.++
T Consensus 570 ~~~~G~~v~l~diwP~~~ei~~~~~~~v~~~~f~~~y~~~~~~~~~w~~l~~~~~~~~~w~~~StyI~~pp~f~~~~~~~ 649 (888)
T PRK09277 570 TDKDGNPVYLKDIWPSDEEIDAVVAKAVKPEMFRKEYADVFEGDERWNAIEVPEGPLYDWDPDSTYIRNPPYFEGMLAEP 649 (888)
T ss_pred cCCCCCEeeccCCCCChHHHHHHHHccCCHHHhhhhcccccCCchhhccCCCCCCCccccCCCCCcccCCCCCCcccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998777
Q ss_pred CCCCCCccceEEeecCCCCcccccccCCCCCCCChHhhHHHHcCCCccccccccCCCCChhhcccccccchhhhhhhcCC
Q 003793 558 PGPHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLLERGVDRKDFNSYGSRRGNDEVMARGTFANIRIVNKLLNG 637 (795)
Q Consensus 558 ~~~~~i~~a~vL~~~gd~itTD~I~PaG~i~~~s~a~~~L~~~g~~~~~~n~yg~rr~n~evm~rg~F~n~r~~n~~~~~ 637 (795)
.++.++.++|+|+++||+||||||||||+|+++||||+||+++|+.++||||||+||||||||+||||+|+|++|+|++|
T Consensus 650 ~~~~~i~~arvL~~~gD~iTTDHISPAG~i~~~spag~yL~~~gv~~~dfnsygsrRgN~evm~RgtfaNir~~N~l~~g 729 (888)
T PRK09277 650 GPVRDIKGARVLALLGDSITTDHISPAGAIKADSPAGKYLLEHGVEPKDFNSYGSRRGNHEVMMRGTFANIRIRNEMVPG 729 (888)
T ss_pred CCCCCccCCEEEEEECCCCcccccCCCCCCCCCChHHHHHHHcCCChhhccccccccccchhhhheeccccchhhhcccC
Confidence 77899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeecCCCcccccccHHHHHHHcCCceEEEeCCccCCCCchhhhhhhhhhcCeeEEEecchhHHHhhhhccCcccc
Q 003793 638 EVGPKTVHIPTGEKLYVFDAAMRYKAAGHETIVLAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIP 717 (795)
Q Consensus 638 ~~g~~t~~~p~~~~~~v~~~a~~y~~~g~~~iiVaG~NfG~GSSRE~Aa~a~~~lGv~aVIA~SFarI~~~Nlin~Gilp 717 (795)
.+|++|+++|+|+.++|||+|++|+++|.++|||||+|||||||||||+|++++|||+||||+||+||||+||+||||||
T Consensus 730 ~egg~t~~~p~g~~~~i~daA~~y~~~g~~~iivag~nyG~GSSRe~Aa~~~~~lgi~avia~sf~rI~~~Nli~~Gilp 809 (888)
T PRK09277 730 VEGGYTRHFPEGEVMSIYDAAMKYKEEGTPLVVIAGKEYGTGSSRDWAAKGTRLLGVKAVIAESFERIHRSNLVGMGVLP 809 (888)
T ss_pred CccceEEECCCCcEeeHHHHHHHHHhcCCceEEEccCccCCCCcHHHHHHHHHHhCCcEEEEecHHHHHHhhHhhcCcce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCccchhhcccCCCceEEEecCCccccCCCCceEEEE--cCCC--eEEEEEecCCCHHHHHHHHhcChHHHHHHHhh
Q 003793 718 LCFKPGEDADTLGLAGHERYTINLPNKVSEIRPGQDITVT--TDTG--KSFTCTVRFDTEVELAYFDHGGILPYVIRNLI 793 (795)
Q Consensus 718 l~~~~~~~~~~l~~~~~~~~~idl~~~~~~~~~g~~v~v~--~~~g--~~~~~~~~~~~~~e~~~~~aGGll~~v~~~~~ 793 (795)
|+|+++++|++|+++++|.++|+... +++||++++++ ..+| ++|.++++++|+.|++||++||+||||+|+++
T Consensus 810 l~~~~~~~~~~lgl~g~e~~~i~~l~---~l~p~~~v~v~~~~~~G~~~~~~~~~r~dt~~Ei~y~~~GGiL~yv~r~~~ 886 (888)
T PRK09277 810 LQFKPGESRKTLGLDGTETFDIEGLE---DLKPGATVTVVITRADGEVVEFPVLCRIDTAVEVDYYRNGGILQYVLRDLL 886 (888)
T ss_pred eecCCcccHHHhCCCCCceEEEcCcc---cCCCCCEEEEEEEeCCCCEEEEEEEEecCCHHHHHHHHcCCHHHHHHHHHh
Confidence 99999999999999999999985333 47899888774 4566 78999999999999999999999999999998
Q ss_pred cC
Q 003793 794 KQ 795 (795)
Q Consensus 794 ~~ 795 (795)
++
T Consensus 887 ~~ 888 (888)
T PRK09277 887 AS 888 (888)
T ss_pred hC
Confidence 64
No 7
>TIGR02333 2met_isocit_dHY 2-methylisocitrate dehydratase, Fe/S-dependent. Members of this family appear in an operon for the degradation of propionyl-CoA via 2-methylcitrate. This family is homologous to aconitases A and B and appears to act the part as 2-methylisocitrate dehydratase, the enzyme after PrpD and before PrpB. In Escherichia coli, which lacks a member of this family, 2-methylisocitrate dehydratase activity was traced to aconitase B (TIGR00117) (PubMed:12473114).
Probab=100.00 E-value=3.3e-226 Score=1943.32 Aligned_cols=757 Identities=46% Similarity=0.816 Sum_probs=721.0
Q ss_pred ChHHHHhcCCCCCccCCCCceEEEccCCcccCCCC-chhHHHHhHHHHHHHhhhhhhhhhhhccccCcceeeCCCCceec
Q 003793 1 MRDAMKNLNSDPKKINPLVPVDLVVDHSVQVDVAR-SENAVQANMEFEFQRNQERFAFLKWGSSAFHNMLVVPPGSGIVH 79 (795)
Q Consensus 1 ~r~~~~~~g~~~~~~~P~~pv~lv~DH~v~~~~~~-~~~a~~~n~~~e~~rn~e~~~fl~~~~~~~~~~~~~~pg~GI~H 79 (795)
|||+++++|+||++|||.+|++|||||||++|.++ +.+++..|+.+||+||.|||.||||++++|+|++|||||+||||
T Consensus 93 mr~a~~~~g~dp~~inp~vP~dlviDHsv~vd~~g~~~da~~~n~~~e~~rN~Ery~FLkwa~~af~~~~~~ppG~GI~H 172 (858)
T TIGR02333 93 LRDAIAEKGGDPAQVNPVVPTQLIVDHSLAVEYGGFDPDAFEKNRAIEDRRNEDRFHFINWTKTAFKNVDVIPAGNGIMH 172 (858)
T ss_pred hHHHHHHcCCChhhcCCCCCCeEEeCCcceeccCCCCcchhHHHHHHHHhhhHHHHHHHHHHHHHhCCcEEeCCCCCEee
Confidence 89999999999999999999999999999999999 79999999999999999999999999999999999999999999
Q ss_pred ccccccccceeecCCCccccCeEEecCCCCCccCccccccccccHHHHHHHHccCceeeeCCcEEEEEEeccCCCCCChh
Q 003793 80 QVNLEYLGRVVFNTDGILYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLTGKLRDGVTAT 159 (795)
Q Consensus 80 qv~~E~~a~~v~~~~G~~~P~~ivGtDSHT~~~GalG~la~GvGg~e~~~~m~g~~~~~~vPevv~V~l~G~l~~gVtak 159 (795)
||++|+||+||+.++|+++|+++|||||||||+||||+|||||||+|++++|+||++||++||||+|+|+|+|++|||||
T Consensus 173 QV~lE~la~vv~~~~G~a~Pd~ivGTDSHT~~~GgLG~lg~GVGg~Ea~aamlg~p~~l~vPevIgV~LtG~L~~gVtak 252 (858)
T TIGR02333 173 QINLEKMSPVIQVKNGVAFPDTCVGTDSHTPHVDALGVIAIGVGGLEAETVMLGRASMMRLPDIVGVELTGKRQPGITAT 252 (858)
T ss_pred eEchhhccccccccCCcccCCeEEecCCCCCCCCccceeEecCCHHHHHHHHhCCeeeeeCCcEEEEEEEeecCCCCCHh
Confidence 99999999999988899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhcCccceEEEEecCcCCCCCcccchhhcccccccCceeeeeeCChHHHHHHHhcCCChhhHHHHHHHHH
Q 003793 160 DLVLTVTQMLRKHGVVGKFVEFYGEGMGQLPLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVSMIEEYLR 239 (795)
Q Consensus 160 DviL~i~~~l~~~G~~g~~vEf~G~gv~~Ls~~~R~TI~NMa~E~GA~~~~fp~D~~t~~yL~~~gr~~~~~~~~~~y~~ 239 (795)
||||+|+++||++|++||+|||+|||+++||+++|||||||++|||||+||||+|++|++||+.|||++++++++++|.|
T Consensus 253 DliL~i~~~Lr~~Gvvgk~VEF~G~gv~~LS~~dRaTIaNMa~E~GAt~gifp~De~T~~YL~~tgR~~~~~~lve~y~k 332 (858)
T TIGR02333 253 DIVLALTEFLRKERVVSAYLEFFGEGARALTIGDRATISNMTPEYGATAAMFYIDEQTIDYLKLTGREPEQVKLVETYAK 332 (858)
T ss_pred HHHHHHHHHHhhcCccceEEEEeCCccccCCHHHHHHHhccchhhCceEEEECCChhHHHHHHhcCCchhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988999999999
Q ss_pred HhhhcccCCCCCCCCccceEEEEECCCccceeecCCCCCCccccCCcchhhHHhhhccccccCCCCCccccccccccccC
Q 003793 240 ANKMFVDYNEPEQERSYSSYLQLDLADVEPCISGPKRPHDRVPLKDMKADWHACLENQVGFKGFAVPKQEQDKVAKFSFH 319 (795)
Q Consensus 240 ~~~l~~~~~~~D~~a~Y~~vieiDLs~leP~VA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 319 (795)
++++|++ +|++|.|+++++||||+|||+||+|++|||++|++|++.... ..... . ...
T Consensus 333 ~~~l~~d---~d~~a~Y~~vieiDLs~leP~VAgP~~Pd~~vpl~e~~~~~~------------~~~~~------~-~~~ 390 (858)
T TIGR02333 333 AAGLWAD---SLKHAVYERVLEFDLSSVVRNMAGPSNPHARVPTSDLAARGI------------AGPAE------E-QPE 390 (858)
T ss_pred HHHhhcC---cCCCCCeEEEEEEEcccceecccCCCChhhcCCHHHhhhccc------------ccccc------c-ccc
Confidence 9999964 578999999999999999999999999999999999874210 00000 0 012
Q ss_pred CCcccccCccEEEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCccCCceeEEEecCcHHHHHHHHHcCcHHHHHhcCcEE
Q 003793 320 GQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLEVKPWVKTSLAPGSGVVTKYLQQSGLQKYLNQQGFHI 399 (795)
Q Consensus 320 g~~~~l~~g~V~~a~IGSCTN~~~~dl~~aA~lLa~~a~~~G~kv~~~V~~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~i 399 (795)
| .+.||+|++|||||||||||||+|+||++|+|+|+++|+||+||||++|+|||++|++||+++||+++|+++||+|
T Consensus 391 g---~l~~g~V~ia~IgSCTN~s~~d~~~aA~lLak~A~~~Glkv~p~Vk~~v~PGS~~V~~~l~~~Gl~~~L~~aGf~v 467 (858)
T TIGR02333 391 G---LMPDGAVIIAAITSCTNTSNPRNVVAAGLLARNANQLGLKRKPWVKTSFAPGSKVAQLYLEEAGLLPELEQLGFGI 467 (858)
T ss_pred C---cccCCceeEEEEECCCCCCCHhHHHHHHHHHHHHHhcCCCcCCCeeEEEeCCCHHHHHHHHHcCcHHHHHHcCCEE
Confidence 3 4789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCccccCCCCCCChhhhhhcccCceeEEEEeccCCCCCCCCCCccCCceecChHHHHHHHhccccccCCCCCCCcCC
Q 003793 400 VGYGCTTCIGNSGDLDESVATAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVDIDFEKEPIGTG 479 (795)
Q Consensus 400 ~~~gCg~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~vaA~AlaG~I~~d~~~~plg~~ 479 (795)
++||||+|+|++|++.+++++.|.+++++.++|||+||||+||||+..+.+|||||++||||||+|+|++|+++||||.+
T Consensus 468 ~~~GCg~CiG~~G~l~~~~~~~i~~~~~~~~~VsS~NRNF~GR~g~~~~~~yLASP~lVaA~AlaG~I~~d~~~dplg~~ 547 (858)
T TIGR02333 468 VAFACTTCNGMSGALDPVIQQEIIDRDLYATAVLSGNRNFDGRIHPYAKQAFLASPPLVVAYAIAGTIRFDIEKDVLGVD 547 (858)
T ss_pred eCCcchhccCcCCCCCcchhhhhcccCceeEEEeccCCCCCCCCCCCcceeEecCHHHHHHHHHhCceeeccCcCccccC
Confidence 99999999999999999999999999999999999999999999999989999999999999999999999999999999
Q ss_pred CCCCccccccCCCChHHHHHHhhccCCcchhhhccccccCCCcccccccCCCCCccccCCCCccccCCCCCCCCCCCCCC
Q 003793 480 KDGKGVYFKDIWPSNEEIAEVVQSSVLPDMFKSTYEAITKGNPMWNQLSVPTSTLYSWDPNSTYIHEPPYFKNMTMEPPG 559 (795)
Q Consensus 480 ~~G~~v~l~di~P~~~ei~~~~~~~v~p~~~~~~y~~~~~~~~~w~~l~~~~~~~~~w~~~st~i~~pp~f~~~~~~~~~ 559 (795)
++|++|||+||||+.+||++++.+.++|++|++.|++++.+++ ++++.+++|+|+++||||++||||+++ +.+
T Consensus 548 ~~G~~v~l~diwP~~~Ei~~~~~~~~~~~~f~~~y~~~~~~~~----~~~~~~~~~~w~~~Styi~~pp~f~~~---~~~ 620 (858)
T TIGR02333 548 ADGKPIRLKDIWPSDEEIDAVVAAAVKPEQFRKVYIPMFDLDD----TQSAVSPLYDWRPMSTYIRRPPYWEGA---LAG 620 (858)
T ss_pred CCCCeEeecCCCCChHHHHHHHHhccChhhhhhhccccccCCc----cccCcCCCccCCCCCceecCCCCccCC---CCc
Confidence 9999999999999999999999999999999999999988876 678888999999999999999999988 335
Q ss_pred CCCCccceEEeecCCCCcccccccCCCCCCCChHhhHHHHcCCCccccccccCCCCChhhcccccccchhhhhhhcC--C
Q 003793 560 PHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLLERGVDRKDFNSYGSRRGNDEVMARGTFANIRIVNKLLN--G 637 (795)
Q Consensus 560 ~~~i~~a~vL~~~gd~itTD~I~PaG~i~~~s~a~~~L~~~g~~~~~~n~yg~rr~n~evm~rg~F~n~r~~n~~~~--~ 637 (795)
+.+|++||+|+++||+||||||||||+|+++||||+||+++|+.+++||+||+||||||||+||||+|+|++|+|++ +
T Consensus 621 ~~~i~~arvL~~lgdsiTTDHISPAg~i~~~spAG~yL~~~Gv~~~~fnsyg~rRgN~~vm~rgtF~n~rl~N~l~~~~g 700 (858)
T TIGR02333 621 ERTLKGMRPLAILGDNITTDHLSPSNAILADSAAGEYLAKMGLPEEDFNSYATHRGDHLTAQRATFANPKLFNEMVKNDG 700 (858)
T ss_pred ccCccCcEeeeecCCCccccccCcCCCCCCCCchHHHHHHcCCChhhcccccccccchHHHhhcccccchhhhhhccccC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999997 4
Q ss_pred --CCCCceeecCCCcccccccHHHHHHHcCCceEEEeCCccCCCCchhhhhhhhhhcCeeEEEecchhHHHhhhhccCcc
Q 003793 638 --EVGPKTVHIPTGEKLYVFDAAMRYKAAGHETIVLAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGI 715 (795)
Q Consensus 638 --~~g~~t~~~p~~~~~~v~~~a~~y~~~g~~~iiVaG~NfG~GSSRE~Aa~a~~~lGv~aVIA~SFarI~~~Nlin~Gi 715 (795)
.+|++|+|+|+|+.++|||+|++||++|+++|||||+|||||||||||||++++|||+||||+||+|||++||+||||
T Consensus 701 ~~~~g~~t~~~p~g~~~~i~daA~~Y~~~g~p~iivag~nyG~GSSRe~Aa~~~~~lGv~avia~sf~rI~~~Nl~~~G~ 780 (858)
T TIGR02333 701 SVKQGSLARIEPEGKVTRMWEAIETYMNRKQPLIIIAGADYGQGSSRDWAAKGVRLAGVEAIVAEGFERIHRTNLVGMGV 780 (858)
T ss_pred ccccCceeEecCCCcEeeHHHHHHHHHHcCCeEEEEccCccCCCCcHHHHHHHHHHhCceEEEEccHHHHHHhhhhhcCc
Confidence 479999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCccchhhcccCCCceEEEecCCccccCCCCceEEEE--cCCC--eEEEEEecCCCHHHHHHHHhcChHHHHHHH
Q 003793 716 IPLCFKPGEDADTLGLAGHERYTINLPNKVSEIRPGQDITVT--TDTG--KSFTCTVRFDTEVELAYFDHGGILPYVIRN 791 (795)
Q Consensus 716 lpl~~~~~~~~~~l~~~~~~~~~idl~~~~~~~~~g~~v~v~--~~~g--~~~~~~~~~~~~~e~~~~~aGGll~~v~~~ 791 (795)
|||+|.+++++++|++++.|.++|. + +++||++++++ ..+| .+|.+.++++|+.|++||++||+||||+|+
T Consensus 781 lpl~f~~~~~~~~l~l~g~e~~~i~--~---~~~p~~~~~v~~~~~~g~~~~~~~~~r~dt~~ei~y~~~GgiL~~v~~~ 855 (858)
T TIGR02333 781 LPLEFKPGTNRHTLGLDGTETFDVV--G---EITPRADLTLVVTRKNGEKLEVPVTCRLDTAEEVSVYEAGGVLQRFAQD 855 (858)
T ss_pred ceEEeCCCCChhhcCCCCCeeEEec--c---CCCCCCeEEEEEEeCCCCEEEEEEEEEcCCHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999999999998883 2 47899988775 3677 689999999999999999999999999999
Q ss_pred hhc
Q 003793 792 LIK 794 (795)
Q Consensus 792 ~~~ 794 (795)
+++
T Consensus 856 ~~~ 858 (858)
T TIGR02333 856 FLE 858 (858)
T ss_pred hhC
Confidence 863
No 8
>COG1048 AcnA Aconitase A [Energy production and conversion]
Probab=100.00 E-value=1.7e-223 Score=1897.26 Aligned_cols=763 Identities=63% Similarity=1.048 Sum_probs=732.0
Q ss_pred ChHHHHhcCCCCCccCCCCceEEEccCCcccCCCCchhHHHHhHHHHHHHhhhhhhhhhhhccccCcceeeCCCCceecc
Q 003793 1 MRDAMKNLNSDPKKINPLVPVDLVVDHSVQVDVARSENAVQANMEFEFQRNQERFAFLKWGSSAFHNMLVVPPGSGIVHQ 80 (795)
Q Consensus 1 ~r~~~~~~g~~~~~~~P~~pv~lv~DH~v~~~~~~~~~a~~~n~~~e~~rn~e~~~fl~~~~~~~~~~~~~~pg~GI~Hq 80 (795)
|||+++++|+||.++||.+||+|+|||++++|.++.++|+.+|+.+||+||.|||+||+|++++|+||+|||||+|||||
T Consensus 95 mr~a~~~~g~dp~~inP~~pvdLviDHsv~vd~~g~~~a~~~n~~~e~~rN~ery~FL~w~~kaf~n~~vvPPGtGIiHQ 174 (861)
T COG1048 95 MRDAMVELGGDPAKINPVVPVDLVIDHSVQVDVGGDPDAFEKNVELEFERNGERYKFLKWAAKAFYNFRVVPPGTGIIHQ 174 (861)
T ss_pred HHHHHHHhcCChhhcCCCCcceeeecceeeeecCCChhhhhhhhhhHhhhhhHHHHHHHHHHHhcCCcEEECCCCceeee
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccceeecCCCccccCeEEecCCCCCccCccccccccccHHHHHHHHccCceeeeCCcEEEEEEeccCCCCCChhh
Q 003793 81 VNLEYLGRVVFNTDGILYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLTGKLRDGVTATD 160 (795)
Q Consensus 81 v~~E~~a~~v~~~~G~~~P~~ivGtDSHT~~~GalG~la~GvGg~e~~~~m~g~~~~~~vPevv~V~l~G~l~~gVtakD 160 (795)
||+||||++||..+|++||||+|||||||||+||||+|||||||+|++++|+|||+||++|+||+|+|+|+|++||||||
T Consensus 175 VnLE~la~vv~~~~g~a~pdtlvGTDSHTtminGLGvLgwGVGGiEAeaaMlG~p~~~~iP~VvGVkLtGkl~~gvTatD 254 (861)
T COG1048 175 VNLEYLAKVVWAKPGVAYPDTLVGTDSHTTMIGGLGVLGWGVGGIEAEAAMLGQPWYMLIPEVVGVKLTGKLPEGVTATD 254 (861)
T ss_pred ehHhhhccceeccCcccccCceeeccCCCCCcCcceEEEeccchHHHHHHHcCCceEeeCCcEEEEEEeccCCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCccceEEEEecCcCCCCCcccchhhcccccccCceeeeeeCChHHHHHHHhcCCChhhHHHHHHHHHH
Q 003793 161 LVLTVTQMLRKHGVVGKFVEFYGEGMGQLPLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVSMIEEYLRA 240 (795)
Q Consensus 161 viL~i~~~l~~~G~~g~~vEf~G~gv~~Ls~~~R~TI~NMa~E~GA~~~~fp~D~~t~~yL~~~gr~~~~~~~~~~y~~~ 240 (795)
|||+|+++||++|++|||||||||||++||+++|+|||||++||||||||||.|++|++||+.|||++++++++|+|+++
T Consensus 255 lvL~vt~~Lr~~gvVgkfVEFfG~Gv~~Ls~~dRaTI~NM~pEyGAT~g~FPiDe~tl~YL~~tgR~~~~i~lve~y~~~ 334 (861)
T COG1048 255 LVLTVTGMLRKKGVVGKFVEFFGPGVASLSLADRATIANMGPEYGATSGFFPIDEETLDYLRLTGRSEEQVALVEAYAKA 334 (861)
T ss_pred HHHHHHHHHHhcCccceEEEEECCchhhCCcccceeeeccccccccccccCCCCHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccCCCCCCCCccceEEEEECCCccceeecCCCCCCccccCCcchhhHHhhhccccccCCCCCccccccccccccCC
Q 003793 241 NKMFVDYNEPEQERSYSSYLQLDLADVEPCISGPKRPHDRVPLKDMKADWHACLENQVGFKGFAVPKQEQDKVAKFSFHG 320 (795)
Q Consensus 241 ~~l~~~~~~~D~~a~Y~~vieiDLs~leP~VA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g 320 (795)
|+||++. +|++|.|+++++||||+|+|+||+|++||++++|++++++|.+.+...... ..+...|
T Consensus 335 ~~l~~~~--~~~~a~Y~~~lelDLS~v~p~lAGP~~P~~~v~l~~~~~~~~~~~~~~~~~-------------~~~~~~~ 399 (861)
T COG1048 335 QGLWYDP--ADKDAEYDKVLELDLSTVEPSLAGPKRPQDRVPLSEVAENFEKILREIEIK-------------RVYSLLG 399 (861)
T ss_pred hcccCCc--cccCCccceeEEEEhhhCcccccCCCChhhceEHHHHHHHHHHhhhhhhcc-------------ccccccc
Confidence 9999764 678999999999999999999999999999999999999988766443110 0133345
Q ss_pred CcccccCccEEEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCccCCceeEEEecCcHHHHHHHHHcCcHHHHHhcCcEEe
Q 003793 321 QPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLEVKPWVKTSLAPGSGVVTKYLQQSGLQKYLNQQGFHIV 400 (795)
Q Consensus 321 ~~~~l~~g~V~~a~IGSCTN~~~~dl~~aA~lLa~~a~~~G~kv~~~V~~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~i~ 400 (795)
+ ++.||+|+||+|||||||||||+|+||++|||+|+++|+|++||||++|+|||++|.+||+++||+++|+++||.++
T Consensus 400 ~--~~~~g~V~iaaItSCTNtSnp~v~~aAgllak~a~~~Gl~v~p~VktslAPGS~vV~~yL~~~Gl~~~L~~lGf~iv 477 (861)
T COG1048 400 K--ELGDGKVVIAAITSCTNTSNPDVLIAAGLLAKKAVEKGLKVKPWVKTSVAPGSKVVTEYLEKAGLLPYLEKLGFNIV 477 (861)
T ss_pred c--cCCCCcEEEEEEeeccCCCCHHHHHHHHHHHhhHHhcccCCCCCeeEeeCCCcHHHHHHHHHcCCHHHHHhcCCEEe
Confidence 4 78999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCccccCCCCCCChhhhhhcccCceeEEEEeccCCCCCCCCCCccCCceecChHHHHHHHhccccccCCCCCCCcCCC
Q 003793 401 GYGCTTCIGNSGDLDESVATAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVDIDFEKEPIGTGK 480 (795)
Q Consensus 401 ~~gCg~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~vaA~AlaG~I~~d~~~~plg~~~ 480 (795)
++||+||||||++|+++++..|.++++++++|+|+||||+||+||..+.+|||||++|+||||+|+|++|+++||++.++
T Consensus 478 ~~gCttCIGnsg~L~~~i~~~I~~~~l~~~avlSgNRNFeGRi~p~~k~nyLaSP~LVvAyAlAG~i~~d~~~~~lg~~~ 557 (861)
T COG1048 478 GYGCTTCIGNSGPLPEEIEKAINDNDLVVTAVLSGNRNFEGRIGPLVKANYLASPPLVVAYALAGTINFDLTTDPLGTDN 557 (861)
T ss_pred ccccccccCCCCCCChhhhhccccCceEEEeeeccCCCCCcCCCChhhcccccCcHHHHHHHHhcccccCcccCccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccccCCCChHHHHHHhhccCCcchhhhccccccCCCcccccccCCCCCccccCCCCccccCCCCCCCCCCCCCCC
Q 003793 481 DGKGVYFKDIWPSNEEIAEVVQSSVLPDMFKSTYEAITKGNPMWNQLSVPTSTLYSWDPNSTYIHEPPYFKNMTMEPPGP 560 (795)
Q Consensus 481 ~G~~v~l~di~P~~~ei~~~~~~~v~p~~~~~~y~~~~~~~~~w~~l~~~~~~~~~w~~~st~i~~pp~f~~~~~~~~~~ 560 (795)
+|+++||+||||+.+|+.+.+.+.+.+++|++.|..+|. |+.+++|++++|.|++.||||++||||+.+...+.+
T Consensus 558 ~g~~v~l~diwP~~~ei~~~v~~~~~~e~f~~~y~~v~~----w~~~~~~~~~~y~w~~~styi~~pP~f~~~~~~~~~- 632 (861)
T COG1048 558 DGKPVYLKDIWPSTEEIAEAVGKAVKPEMFRKEYADVFK----WNAIEVPEGPLYDWPNISTYIRLPPFFDGMGAEPKP- 632 (861)
T ss_pred CCCceeeeccCCCcHHHHHHHhhccChhhhccccccccc----cccccCCCcCcccCCCcCccccCCCccccccccccc-
Confidence 999999999999999999999999999999999999998 999999999999999999999999999998765544
Q ss_pred CCCccceEEeecCCCCcccccccCCCCCCCChHhhHHHHcCCCccccccccCCCCChhhcccccccchhhhhhhcCCCCC
Q 003793 561 HGVKDAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLLERGVDRKDFNSYGSRRGNDEVMARGTFANIRIVNKLLNGEVG 640 (795)
Q Consensus 561 ~~i~~a~vL~~~gd~itTD~I~PaG~i~~~s~a~~~L~~~g~~~~~~n~yg~rr~n~evm~rg~F~n~r~~n~~~~~~~g 640 (795)
|+++|+|+++||+||||||||||+|+++|||++||...|+.+.|||+||+||||||||+|++|+|+|++|++.++ +|
T Consensus 633 --~~~~r~L~~~gD~iTTDHISPAg~i~~~spag~yl~~~gv~~~dfNsygsrrgnhevm~r~tfaNir~~n~~~~~-~g 709 (861)
T COG1048 633 --IKGARVLAKLGDSITTDHISPAGSIKADSPAGKYLYEHGVERIDFNSYGSRRGNHEVMMRGTFANIRIRNEMVPG-EG 709 (861)
T ss_pred --cccceeeeeecCccccCcccCCCCCCCCCccchhhhhcCCCcccccchhcccccHHHhhhhhhcccccccccccc-cC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999988 99
Q ss_pred CceeecCCCcccccccHHHHHHHcCCceEEEeCCccCCCCchhhhhhhhhhcCeeEEEecchhHHHhhhhccCccccccc
Q 003793 641 PKTVHIPTGEKLYVFDAAMRYKAAGHETIVLAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCF 720 (795)
Q Consensus 641 ~~t~~~p~~~~~~v~~~a~~y~~~g~~~iiVaG~NfG~GSSRE~Aa~a~~~lGv~aVIA~SFarI~~~Nlin~Gilpl~~ 720 (795)
++|+++|+|+ |||+|++||+.|.++|||||+|||+||||||||+++++|||+||||+|||||||+||||||||||+|
T Consensus 710 g~t~~~p~g~---iydaa~~yk~~g~p~vvvaG~~YG~GSSRdwAAkg~~lLGv~AVIAeSFeRIHrSNLi~mGvLPLqf 786 (861)
T COG1048 710 GYTIHQPSGE---IYDAAMKYKEEGIPLVVVAGKNYGTGSSRDWAAKGPRLLGVKAVIAESFERIHRSNLIGMGVLPLQF 786 (861)
T ss_pred cceeecCCch---hHHHHHHHHHcCCCeEEEeeccCCCCchHHHHhhCchhcCeeeeeehhHHHHHHhhcccceeeeeec
Confidence 9999999998 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccchhhcccCCCceEEEecCCccccCCCCceEEEE--cCCC--eEEEEEecCCCHHHHHHHHhcChHHHHHHHhhc
Q 003793 721 KPGEDADTLGLAGHERYTINLPNKVSEIRPGQDITVT--TDTG--KSFTCTVRFDTEVELAYFDHGGILPYVIRNLIK 794 (795)
Q Consensus 721 ~~~~~~~~l~~~~~~~~~idl~~~~~~~~~g~~v~v~--~~~g--~~~~~~~~~~~~~e~~~~~aGGll~~v~~~~~~ 794 (795)
++++++++|++++.+.+.|++.+ .+.|+.+++++ ..|| .++...++++|+.|++|+++||+|+|+++++++
T Consensus 787 ~~~~~~~~l~l~g~e~~~i~~~~---~~~p~~~~~v~~~~~dg~~~~~~~~~r~dt~~E~~y~k~GGiL~~v~~~~~~ 861 (861)
T COG1048 787 PNGETYDKLGLDGEETIDIGGLE---NLKPGATVTVTVTRGDGPVEEFPVLCRIDTAEEIEYYKAGGILNYVKRDLLK 861 (861)
T ss_pred cCCCChhhcCCCCceeEeecccc---cCCCCceEEEEEEcCCCceEEEeeeeecCCHHHHHHHHcCchHHHHHHHhhC
Confidence 99999999999998888887664 57888877765 4566 578889999999999999999999999999764
No 9
>TIGR01340 aconitase_mito aconitate hydratase, mitochondrial. This model represents mitochondrial forms of the TCA cycle enzyme aconitate hydratase, also known as aconitase and citrate hydro-lyase.
Probab=100.00 E-value=9.1e-168 Score=1457.93 Aligned_cols=656 Identities=29% Similarity=0.463 Sum_probs=557.4
Q ss_pred HHhcCCCCCccCCCCceEEEccCCcccCCCCchhHHHHhHHHHHHHhhhhhhhhhhhccccCcceeeCCCCceecccccc
Q 003793 5 MKNLNSDPKKINPLVPVDLVVDHSVQVDVARSENAVQANMEFEFQRNQERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLE 84 (795)
Q Consensus 5 ~~~~g~~~~~~~P~~pv~lv~DH~v~~~~~~~~~a~~~n~~~e~~rn~e~~~fl~~~~~~~~~~~~~~pg~GI~Hqv~~E 84 (795)
|+++|.+ ++++ |+++++||++|++.... .++..+++||.|+|+|++|.+++| +|+|+|||+||||||++|
T Consensus 73 f~~~g~~-~v~~---P~~v~~DH~~~~~~~~~-----~~~~~a~~~N~e~~~~lr~~a~~~-gi~~~~~g~GI~Hqv~~E 142 (745)
T TIGR01340 73 FMTCGLP-QVAV---PASIHCDHLIVGQKGGD-----KDLARAIATNKEVFDFLESAGKKY-GIGFWKPGSGIIHQIVLE 142 (745)
T ss_pred HHHcCCC-CCCC---CCeEEeCCCCccccCcc-----ccHHHHhHhHHHHHHHHHHHHHHC-CCEEECCCCCeeceEchh
Confidence 5666663 4455 46789999999765432 567888999999999999999999 899999999999999999
Q ss_pred cccceeecCCCccccC-eEEecCCCCCccCccccccccccHHHHHHHHccCceeeeCCcEEEEEEeccCCCCCChhhHHH
Q 003793 85 YLGRVVFNTDGILYPD-SVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLTGKLRDGVTATDLVL 163 (795)
Q Consensus 85 ~~a~~v~~~~G~~~P~-~ivGtDSHT~~~GalG~la~GvGg~e~~~~m~g~~~~~~vPevv~V~l~G~l~~gVtakDviL 163 (795)
+ +++|+ ++|||||||||+||||+||||||++|++++|+|++|||++||+|+|+|+|+|++|||||||||
T Consensus 143 ~----------~a~PG~~ivGtDSHT~t~GalG~la~GvG~td~a~~m~G~~~~~~vPe~i~V~l~G~l~~gVtaKDviL 212 (745)
T TIGR01340 143 N----------YAFPGLMMLGTDSHTPNAGGLGTIAIGVGGADAVDALAGAPWELKAPKILGVKLTGKLNGWTSPKDIIL 212 (745)
T ss_pred h----------ccCCCCeEEccCCCcccccchheeEeccCHHHHHHHHhCCeeeccCCcEEEEEEEeecCCCcCHHHHHH
Confidence 5 45775 799999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCccceEEEEecCcCCCCCcccchhhcccccccCceeeeeeCChHHHHHHHhcCCChhhHH-HHHHHHHHhh
Q 003793 164 TVTQMLRKHGVVGKFVEFYGEGMGQLPLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVS-MIEEYLRANK 242 (795)
Q Consensus 164 ~i~~~l~~~G~~g~~vEf~G~gv~~Ls~~~R~TI~NMa~E~GA~~~~fp~D~~t~~yL~~~gr~~~~~~-~~~~y~~~~~ 242 (795)
+|+++|+++|++||+|||+|||+++||+++|||||||++|+|||+||||+|++|++||+.+||++.... ..+.|. ..
T Consensus 213 ~ii~~l~~~G~~g~~vEf~G~gv~~Ls~~~R~Ti~NMa~E~GA~~gifp~De~T~~yL~~~gr~~~~~~~~~~~~~--~~ 290 (745)
T TIGR01340 213 KLAGLLTVRGGTGYIVEYFGPGVESLSCTGMATICNMGAEIGATTSIFPFNEAMSRYLKATNRAQIAEDAKTGQYS--FF 290 (745)
T ss_pred HHHHHhCcCCccceEEEEeCcccccCCHHHhhhhhhcccccCceeEEeCCChHHHHHHHhcCCchhhhHHHHHHHh--cc
Confidence 999999999999999999999999999999999999999999999999999999999999999875422 222221 12
Q ss_pred hcccCCCCCCCCccceEEEEECCCccceeecCCCCCCccccCCcchhhHHhhhccccccCCCCCccccccccccccCCCc
Q 003793 243 MFVDYNEPEQERSYSSYLQLDLADVEPCISGPKRPHDRVPLKDMKADWHACLENQVGFKGFAVPKQEQDKVAKFSFHGQP 322 (795)
Q Consensus 243 l~~~~~~~D~~a~Y~~vieiDLs~leP~VA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~ 322 (795)
+| .+|++|.|+++++||||+|||+||+|++|||++||+|+++.+++ .|++
T Consensus 291 ~~----~~D~~a~Y~~~i~iDls~leP~vA~P~~Pdn~~~v~e~~~~~~~--------------------------~g~~ 340 (745)
T TIGR01340 291 KL----KADEGAQYDELIEIDLSKLEPHINGPFTPDLSTPISKFKETVQK--------------------------NGWP 340 (745)
T ss_pred cc----cCCCCCCeEEEEEEEccceeEeecCCCChhcccChHHhCchhhh--------------------------cCCC
Confidence 22 57999999999999999999999999999999999999865331 0111
Q ss_pred ccccCccEEEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCccCCceeEEEecCcHHHHHHHHHcCcHHHHHhcCcEEecc
Q 003793 323 AELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLEVKPWVKTSLAPGSGVVTKYLQQSGLQKYLNQQGFHIVGY 402 (795)
Q Consensus 323 ~~l~~g~V~~a~IGSCTN~~~~dl~~aA~lLa~~a~~~G~kv~~~V~~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~i~~~ 402 (795)
.+|+|||||||||||++||+.||.+| |+|+ |++++++|+++|+|||++|+++|+++|++++|+++||.|.+|
T Consensus 341 -----~~Id~a~IGSCTNgr~~Dl~~AA~il-k~a~--~~~v~~~v~~~v~PgS~~V~~~l~~~Gl~~~l~~aGa~v~~~ 412 (745)
T TIGR01340 341 -----EKLSAGLIGSCTNSSYEDMSRCASIV-KDAE--QAGLKPKSPFYVTPGSEQIRATLERDGILQTFEKFGGIVLAN 412 (745)
T ss_pred -----ceecEEEEEcCCCCCHHHHHHHHHHh-hhhh--hCCCCCCCCEEEECCCHHHHHHHHHCCcHHHHHHcCCEEeCC
Confidence 24789999999999999977776665 5655 466788899999999999999999999999999999999999
Q ss_pred CCccccCCCCCCChhhhhhcccCceeEEEEeccCCCCCCCC-CCccCCceecChHHHHHHHhccccccCCCCCCCcCCCC
Q 003793 403 GCTTCIGNSGDLDESVATAITENDIVAAAVLSGNRNFEGRV-HPLTRANYLASPPLVVAYALAGTVDIDFEKEPIGTGKD 481 (795)
Q Consensus 403 gCg~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~-g~~~~~~yLaSP~~vaA~AlaG~I~~d~~~~plg~~~~ 481 (795)
|||+|+|+++.+. .+.+++.+ ++|||+||||+||| |...+.+|||||+|||||||+|+|++|+++||+ .+++
T Consensus 413 gCg~CiG~~~~~~-----~~~~ge~~-~~vst~NRNF~GR~~g~~~~~~yLaSP~~vaAsAlaG~i~~d~~~dpl-~~~~ 485 (745)
T TIGR01340 413 ACGPCIGQWDRKD-----DVKKGEPN-TILTSYNRNFRGRNDGNPATMNFLASPEIVTAMSYAGSLTFNPLTDSL-TTPD 485 (745)
T ss_pred CccccccCCCCcC-----ccCCCCce-EEEEecCCCCCcCCCCCCCceEEECCHHHHHHHHhhceeecCcccCcc-cCCC
Confidence 9999999986432 13446654 57999999999999 555677999999999999999999999999999 6999
Q ss_pred CCccccccCCCChHHHHHHhhccCCcchhhhccccccCCCcccccccCC--CCCccccCCCCccccCCCCCCCCCCCCCC
Q 003793 482 GKGVYFKDIWPSNEEIAEVVQSSVLPDMFKSTYEAITKGNPMWNQLSVP--TSTLYSWDPNSTYIHEPPYFKNMTMEPPG 559 (795)
Q Consensus 482 G~~v~l~di~P~~~ei~~~~~~~v~p~~~~~~y~~~~~~~~~w~~l~~~--~~~~~~w~~~st~i~~pp~f~~~~~~~~~ 559 (795)
|++|||+ ||+.+|+++. +| ...+..|+.+..+ ++..|+|+++||||++||+|++. +
T Consensus 486 g~~v~l~--~p~~~e~~~~--------~~-------~~~~~~~~~~~~~~~~~~~~~~~p~s~~i~~~~~f~~~-----~ 543 (745)
T TIGR01340 486 GKEFKFP--APKGDELPEK--------GF-------EAGRDTFQAPPGSPNPNVEVAVSPSSDRLQLLEPFEPW-----N 543 (745)
T ss_pred CCEeecC--CCCccccchh--------cc-------cCCccceeCCCCCCCCCceEEeCCCCCCCCCCCCCCCC-----C
Confidence 9999999 7999998765 12 2345667665443 56789999999999999999653 4
Q ss_pred CCCCccceEEeecCCCCcccccccCCCCCCCChHhhHHHHcCCCccccccccCCCCChhhcccccccchhhhhhhcC--C
Q 003793 560 PHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLLERGVDRKDFNSYGSRRGNDEVMARGTFANIRIVNKLLN--G 637 (795)
Q Consensus 560 ~~~i~~a~vL~~~gd~itTD~I~PaG~i~~~s~a~~~L~~~g~~~~~~n~yg~rr~n~evm~rg~F~n~r~~n~~~~--~ 637 (795)
..++.++|||+|+||||||||||||| .||++| |+|.|++ .|.|.. +
T Consensus 544 ~~~i~~a~vLlk~gd~iTTDHIsPAG---------~~L~~r----------------------g~~~~i~-~n~~~~~~n 591 (745)
T TIGR01340 544 GKDLSGLRVLIKVTGKCTTDHISAAG---------PWLKYK----------------------GHLDNIS-NNTLIGAVN 591 (745)
T ss_pred cCCccCCeEEEEECCCcChhcccccc---------hhHhhc----------------------CChhhhh-cceeccccc
Confidence 57899999999999999999999997 489874 3444544 444431 1
Q ss_pred CCCC--ceeecCCCcccccccHHHHHHHcCCceEEEeCCccCCCCchhhhhhhhhhcCeeEEEecchhHHHhhhhccCcc
Q 003793 638 EVGP--KTVHIPTGEKLYVFDAAMRYKAAGHETIVLAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGI 715 (795)
Q Consensus 638 ~~g~--~t~~~p~~~~~~v~~~a~~y~~~g~~~iiVaG~NfG~GSSRE~Aa~a~~~lGv~aVIA~SFarI~~~Nlin~Gi 715 (795)
..++ .+.+.|+|+.++++++|++|++.+.++|||||+||||||||||||+++++|||+||||+||+||||+|||||||
T Consensus 592 ~~~~~~~~~~~~~g~~~~~~~~a~~~~~~~~~~iivaG~nyG~GSSRE~Aa~~~~~lGv~aVIA~SFaRI~~~Nlin~Gi 671 (745)
T TIGR01340 592 AETGEVNKAYDLDGSKGTIPELARDWKARGQPWVVVAEHNYGEGSAREHAALEPRHLGGRIIITKSFARIHETNLKKQGV 671 (745)
T ss_pred ccCCceeEEEcCCCCccchHHHHHHHHhCCccEEEEccccccCCCchHHHHHHHHHhCCcEEEEehHHHHHHhhhhhcCc
Confidence 1222 46677899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCccchhhcccCCCceEEEe-cCCccccCCC---CceEEE--EcCCC--eEEEEEecCCCHHHHHHHHhcChHHH
Q 003793 716 IPLCFKPGEDADTLGLAGHERYTIN-LPNKVSEIRP---GQDITV--TTDTG--KSFTCTVRFDTEVELAYFDHGGILPY 787 (795)
Q Consensus 716 lpl~~~~~~~~~~l~~~~~~~~~id-l~~~~~~~~~---g~~v~v--~~~~g--~~~~~~~~~~~~~e~~~~~aGGll~~ 787 (795)
|||+|.++++++.+. .++++.+. +. ++.| ++.+++ ...+| .+|.+++++ |+.|++||++||+|||
T Consensus 672 lpl~~~~~~~~~~i~--~gd~~~~~~l~----~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~l-t~~E~~~~~aGGiLny 744 (745)
T TIGR01340 672 LPLTFANEADYDKIQ--PGDEVATLNLY----EMLKNGGGGEVDLRVTKKNGKVFEIKLKHTV-SKDQIGFFKAGSALNL 744 (745)
T ss_pred eeEEecCCccHhhcC--CCCEEEEcChh----hccccCCCCeEEEEEEeCCCcEEEEEEEeeC-CHHHHHHHHcCCcccC
Confidence 999999888888765 45666553 33 3444 556664 33455 678888888 9999999999999998
Q ss_pred H
Q 003793 788 V 788 (795)
Q Consensus 788 v 788 (795)
+
T Consensus 745 ~ 745 (745)
T TIGR01340 745 M 745 (745)
T ss_pred C
Confidence 5
No 10
>PRK07229 aconitate hydratase; Validated
Probab=100.00 E-value=4.5e-156 Score=1353.46 Aligned_cols=600 Identities=34% Similarity=0.535 Sum_probs=523.1
Q ss_pred HHHHhcCCCCCccCCCCceEEEccCCcccCCCCchhHHHHhHHHHHHHhhhhhhhhhhhccccCcceeeCCCCceecccc
Q 003793 3 DAMKNLNSDPKKINPLVPVDLVVDHSVQVDVARSENAVQANMEFEFQRNQERFAFLKWGSSAFHNMLVVPPGSGIVHQVN 82 (795)
Q Consensus 3 ~~~~~~g~~~~~~~P~~pv~lv~DH~v~~~~~~~~~a~~~n~~~e~~rn~e~~~fl~~~~~~~~~~~~~~pg~GI~Hqv~ 82 (795)
..++++|.++ .++|.. + +++||++|.. +.+|.++|+|++|++++| +|+|+|||+||||||+
T Consensus 44 ~~~~~~G~~~-~~~p~~-~-~~~DH~~~~~---------------~~~~~~~~~~l~~~a~~~-gi~~~~~g~GI~Hqv~ 104 (646)
T PRK07229 44 LQFEAMGLDR-VKTELS-V-QYVDHNLLQA---------------DFENADDHRFLQSVAAKY-GIYFSKPGNGICHQVH 104 (646)
T ss_pred HHHHHcCCCc-CCCCCe-E-EECCCCCCCC---------------ChhhHHHHHHHHHHHHHh-CCeEECCCCCCcceeh
Confidence 4567889875 567653 3 5899988774 278899999999999999 7999999999999999
Q ss_pred cccccceeecCCCccccCeEEecCCCCCccCccccccccccHHHHHHHHccCceeeeCCcEEEEEEeccCCCCCChhhHH
Q 003793 83 LEYLGRVVFNTDGILYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLTGKLRDGVTATDLV 162 (795)
Q Consensus 83 ~E~~a~~v~~~~G~~~P~~ivGtDSHT~~~GalG~la~GvGg~e~~~~m~g~~~~~~vPevv~V~l~G~l~~gVtakDvi 162 (795)
+|+|++ +| +++|||||||||+||||+||||||++|++++|+|+++||++||+|+|+|+|+|++||++||||
T Consensus 105 ~E~~a~-----PG----~~ivGtDSHT~~~GalG~la~GvG~~d~~~~m~~g~~~~~vPe~v~V~l~G~l~~gV~akDvi 175 (646)
T PRK07229 105 LERFAF-----PG----KTLLGSDSHTPTAGGLGMLAIGAGGLDVALAMAGGPYYLKMPKVVGVKLTGKLPPWVSAKDVI 175 (646)
T ss_pred hhhccC-----CC----CEEEeCCCCcCcCCcccccEEccCHHHHHHHHhcCcEEccCCCEEEEEEEccCCCCcCHHHHH
Confidence 996664 33 789999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCccceEEEEecCcCCCCCcccchhhcccccccCceeeeeeCChHHHHHHHhcCCChhhHHHHHHHHHHhh
Q 003793 163 LTVTQMLRKHGVVGKFVEFYGEGMGQLPLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVSMIEEYLRANK 242 (795)
Q Consensus 163 L~i~~~l~~~G~~g~~vEf~G~gv~~Ls~~~R~TI~NMa~E~GA~~~~fp~D~~t~~yL~~~gr~~~~~~~~~~y~~~~~ 242 (795)
|+|+++|+.+|++||+|||+|||+++||+++|||||||++|+|||+||||+|++|++||+.+||.+++.+
T Consensus 176 L~i~~~l~~~G~~g~~vEf~G~gv~~Ls~~~R~Ti~NM~~E~GA~~~if~~D~~t~~yL~~~gr~~~~~~---------- 245 (646)
T PRK07229 176 LELLRRLTVKGGVGKIIEYFGPGVATLSVPERATITNMGAELGATTSIFPSDERTREFLKAQGREDDWVE---------- 245 (646)
T ss_pred HHHHHHhCccCccceEEEEECcccccccHHHHhhhhccccccCceEEEecCcHHHHHHHHhcCCccccee----------
Confidence 9999999999999999999999999999999999999999999999999999999999999998765421
Q ss_pred hcccCCCCCCCCccceEEEEECCCccceeecCCCCCCccccCCcchhhHHhhhccccccCCCCCccccccccccccCCCc
Q 003793 243 MFVDYNEPEQERSYSSYLQLDLADVEPCISGPKRPHDRVPLKDMKADWHACLENQVGFKGFAVPKQEQDKVAKFSFHGQP 322 (795)
Q Consensus 243 l~~~~~~~D~~a~Y~~vieiDLs~leP~VA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~ 322 (795)
+ .+|++|.|+++++||||+|||+||+|++|||++||+|+++
T Consensus 246 l-----~~D~~a~Y~~~i~iDLs~leP~va~P~~Pd~~~pv~e~~~---------------------------------- 286 (646)
T PRK07229 246 L-----LADPDAEYDEVIEIDLSELEPLIAGPHSPDNVVPVSEVAG---------------------------------- 286 (646)
T ss_pred c-----cCCCCCCeeEEEEEEccceeeeeecCCCccceeEhHHhCC----------------------------------
Confidence 1 4799999999999999999999999999999999999862
Q ss_pred ccccCccEEEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCccCCceeEEEecCcHHHHHHHHHcCcHHHHHhcCcEEecc
Q 003793 323 AELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLEVKPWVKTSLAPGSGVVTKYLQQSGLQKYLNQQGFHIVGY 402 (795)
Q Consensus 323 ~~l~~g~V~~a~IGSCTN~~~~dl~~aA~lLa~~a~~~G~kv~~~V~~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~i~~~ 402 (795)
-.|++||||||||||+|||++||++| +|+||+++||++|+|||++|+++|+++|++++|+++||+|.+|
T Consensus 287 -----~~I~~a~IGSCTN~~~~Dl~~aA~iL------~G~~v~~~v~~~v~PgS~~V~~~l~~~Gl~~~l~~aGa~i~~~ 355 (646)
T PRK07229 287 -----IKVDQVLIGSCTNSSYEDLMRAASIL------KGKKVHPKVSLVINPGSRQVLEMLARDGALADLIAAGARILEN 355 (646)
T ss_pred -----CeEEEEEEecCCCCChHHHHHHHHHh------cCCCCCCCeeEEEeCCCHHHHHHHHHCCcHHHHHHcCCEEeCC
Confidence 13789999999999999999999999 8999999999999999999999999999999999999999999
Q ss_pred CCccccCCCCCCChhhhhhcccCceeEEEEeccCCCCCCCCCCccCCceecChHHHHHHHhccccccCCCCCCCcCCCCC
Q 003793 403 GCTTCIGNSGDLDESVATAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVDIDFEKEPIGTGKDG 482 (795)
Q Consensus 403 gCg~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~vaA~AlaG~I~~d~~~~plg~~~~G 482 (795)
|||+|+|+++. +. +++ ++|||+||||+||||+..+.+|||||++||||||+|+|+ |+.++|++. |
T Consensus 356 gCg~CiG~g~~-~~-------~~~---~~vst~NRNF~GR~G~~~~~~yLaSP~~vaAsA~~G~i~-dp~~~~~~~---g 420 (646)
T PRK07229 356 ACGPCIGMGQA-PA-------TGN---VSLRTFNRNFPGRSGTKDAQVYLASPETAAASALTGVIT-DPRTLALEN---G 420 (646)
T ss_pred CccccccCCCC-CC-------CCc---EEEEccCCCCCccCCCCCCeEEECCHHHHHHHHhcCccC-Chhhccccc---C
Confidence 99999998543 22 233 479999999999999988899999999999999999999 999999876 8
Q ss_pred CccccccCCCChHHHHHHhhccCCcchhhhccccccCCCcccccccCCCCCccccCCCCccccCCCCCCCCCCCCCCCCC
Q 003793 483 KGVYFKDIWPSNEEIAEVVQSSVLPDMFKSTYEAITKGNPMWNQLSVPTSTLYSWDPNSTYIHEPPYFKNMTMEPPGPHG 562 (795)
Q Consensus 483 ~~v~l~di~P~~~ei~~~~~~~v~p~~~~~~y~~~~~~~~~w~~l~~~~~~~~~w~~~st~i~~pp~f~~~~~~~~~~~~ 562 (795)
++++|+ ||+. +.+++.+|. .+++.|+.++.+ .++||+++|+|+++ ++
T Consensus 421 ~~~~~~--~p~~--------~~~~~~~~~-------~~~~~~~~~~~~---------~~p~~~~~~~~~~~-------~~ 467 (646)
T PRK07229 421 EYPKLE--EPEG--------FAVDDAGII-------APAEDGSDVEVV---------RGPNIKPLPLLEPL-------PD 467 (646)
T ss_pred Ccceec--CCcc--------ccCChhhhc-------CCCccccccccc---------CCCCCCCCccCCCC-------Cc
Confidence 999996 6771 123344442 244567666554 45788888888654 47
Q ss_pred CccceEEeecCCCCcccccccCCCCCCCChHhhHHHHcCCCccccccccCCCCChhhcccccccchhhhhhhcCCCCCCc
Q 003793 563 VKDAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLLERGVDRKDFNSYGSRRGNDEVMARGTFANIRIVNKLLNGEVGPK 642 (795)
Q Consensus 563 i~~a~vL~~~gd~itTD~I~PaG~i~~~s~a~~~L~~~g~~~~~~n~yg~rr~n~evm~rg~F~n~r~~n~~~~~~~g~~ 642 (795)
+.++++|+++|||||||||||+|+ +||++ |+|+++|.+++|.+.+ |.
T Consensus 468 ~~~~~vl~~~gd~i~TD~I~Pa~~--------~~l~~--------------r~~~~~l~~~~f~~~~--~~--------- 514 (646)
T PRK07229 468 LLEGKVLLKVGDNITTDHIMPAGA--------KWLPY--------------RSNIPNISEFVFEGVD--NT--------- 514 (646)
T ss_pred CceEEEEEEcCCCCChhccCcCCc--------chhcc--------------CCCHHHHHHHHhccCC--hh---------
Confidence 899999999999999999999862 47763 6899999999998532 21
Q ss_pred eeecCCCcccccccHHHHHHHcCCceEEEeCCccCCCCchhhhhhhhhhcCeeEEEecchhHHHhhhhccCcccccccCC
Q 003793 643 TVHIPTGEKLYVFDAAMRYKAAGHETIVLAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKP 722 (795)
Q Consensus 643 t~~~p~~~~~~v~~~a~~y~~~g~~~iiVaG~NfG~GSSRE~Aa~a~~~lGv~aVIA~SFarI~~~Nlin~Gilpl~~~~ 722 (795)
++.+++..+ ++|||||+|||||||||||||+++++||+||||+||+|||||||+|+|||||+|.+
T Consensus 515 --------------f~~~~~~~~-~~iiVaG~nfG~GSSRE~Aa~a~~~lGv~aVIA~SFarIf~~N~in~Gllpl~~~~ 579 (646)
T PRK07229 515 --------------FPERAKEQG-GGIVVGGENYGQGSSREHAALAPRYLGVKAVLAKSFARIHKANLINFGILPLTFAD 579 (646)
T ss_pred --------------hhHHHHhcC-CcEEEecCccCCCCchHHHHHHHHHHCCCEEEEeCHHHHHHhhHHhcCCceEEecC
Confidence 224566555 68999999999999999999999999999999999999999999999999999987
Q ss_pred ccchhhcccCCCceEEE-ecCCccccCCCCceEEEEc-CCCeEEEEEecCCCHHHHHHHHhcChHHHHHHHhh
Q 003793 723 GEDADTLGLAGHERYTI-NLPNKVSEIRPGQDITVTT-DTGKSFTCTVRFDTEVELAYFDHGGILPYVIRNLI 793 (795)
Q Consensus 723 ~~~~~~l~~~~~~~~~i-dl~~~~~~~~~g~~v~v~~-~~g~~~~~~~~~~~~~e~~~~~aGGll~~v~~~~~ 793 (795)
+++++.+ ..+++++| ++.+ +.++.+|+++. .+|++|.++.++ ++.|++|+++||+|||+++++.
T Consensus 580 ~~~~~~l--~~gd~i~i~dl~~----~~~~~~v~v~~~~~~~~~~~~~~l-~~~e~~i~~aGGll~~~~~~~~ 645 (646)
T PRK07229 580 PADYDKI--EEGDVLEIEDLRE----FLPGGPLTVVNVTKDEEIEVRHTL-SERQIEILLAGGALNLIKKKLA 645 (646)
T ss_pred hHhHhhc--CCCCEEEEccchh----cCCCCeEEEEEecCCEEEEEEccC-CHHHHHHHHcCCHHHHHHHhcc
Confidence 7788875 45788888 6653 45666666543 456889888777 8999999999999999999864
No 11
>TIGR01342 acon_putative aconitate hydratase, putative, Aquifex type. This model represents a small family of proteins homologous (and likely functionally equivalent to) aconitase 1. Members are found, so far in the anaerobe Clostridium acetobutylicum, in the microaerophilic, early-branching bacterium Aquifex aeolicus, and in the halophilic archaeon Halobacterium sp. NRC-1. No member is experimentally characterized.
Probab=100.00 E-value=1.6e-154 Score=1337.85 Aligned_cols=606 Identities=32% Similarity=0.503 Sum_probs=514.5
Q ss_pred HHHhcCCCCCccCCCCceEEEccCCcccCCCCchhHHHHhHHHHHHHhhhhhhhhhhhccccCcceeeCCCCceeccccc
Q 003793 4 AMKNLNSDPKKINPLVPVDLVVDHSVQVDVARSENAVQANMEFEFQRNQERFAFLKWGSSAFHNMLVVPPGSGIVHQVNL 83 (795)
Q Consensus 4 ~~~~~g~~~~~~~P~~pv~lv~DH~v~~~~~~~~~a~~~n~~~e~~rn~e~~~fl~~~~~~~~~~~~~~pg~GI~Hqv~~ 83 (795)
.|+++|.+ + +.|.+ +.+++||++|+.. .+|.++|.|++|.+++| ++.|++||+||||||++
T Consensus 42 ~~~~~g~~-~-v~~~~-~~~~~DH~~~~~d---------------~~~a~~~~~l~~~a~~~-gi~~~~pg~GI~Hqv~~ 102 (658)
T TIGR01342 42 EFEALEMD-E-VKTEL-AAQYCDHNMLQFD---------------FKNADDHKFLMSAAGKF-GAWFSKPGNGICHNVHK 102 (658)
T ss_pred HHHHcCCC-c-cCCCC-eEEECCCCCCCCC---------------hhhHHHHHHHHHHHHHh-CCeEECCCCCEEeeEch
Confidence 46777764 3 45765 8899999998842 26779999999999999 57899999999999999
Q ss_pred ccccceeecCCCccccCeEEecCCCCCccCccccccccccHHHHHHHHccCceeeeCCcEEEEEEeccCCCCCChhhHHH
Q 003793 84 EYLGRVVFNTDGILYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLTGKLRDGVTATDLVL 163 (795)
Q Consensus 84 E~~a~~v~~~~G~~~P~~ivGtDSHT~~~GalG~la~GvGg~e~~~~m~g~~~~~~vPevv~V~l~G~l~~gVtakDviL 163 (795)
|+|++ +| +++|||||||||+||||+||||||++|++++|+||++||++||+|+|+|+|+|++||++|||||
T Consensus 103 E~~a~-----PG----~~ivGtDSHT~t~GalG~la~GvG~td~a~~matg~~~~~vPe~i~V~l~G~l~~gV~aKDviL 173 (658)
T TIGR01342 103 ENFAA-----PG----KTLLGSDSHTPTAGGLGMLAIGAGGIDIAAAMAGEAFYLEMPEIVGVHLEGELPEWATAKDIIL 173 (658)
T ss_pred hhccC-----CC----CEEEecCcCcCCCCcccccEEccCHHHHHHHHhCCcEEccCCcEEEEEEecccCCCcCHHHHHH
Confidence 96654 33 7899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCccceEEEEecCcCCCCCcccchhhcccccccCceeeeeeCChHHHHHHHhcCCChhhHHHHHHHHHHhhh
Q 003793 164 TVTQMLRKHGVVGKFVEFYGEGMGQLPLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVSMIEEYLRANKM 243 (795)
Q Consensus 164 ~i~~~l~~~G~~g~~vEf~G~gv~~Ls~~~R~TI~NMa~E~GA~~~~fp~D~~t~~yL~~~gr~~~~~~~~~~y~~~~~l 243 (795)
+|+++|+.+|++||+|||+|||+++||+++|||||||++|+|||+||||+|++|++||+.++|.+++.. |
T Consensus 174 ~i~~~l~~~G~~g~~vEf~G~gv~~Ls~~~R~Ti~NM~~E~GA~~~if~~D~~t~~yl~~~~r~~~~~~----------l 243 (658)
T TIGR01342 174 ELLRRLSVKGGLGKIFEYFGEGVEELSVPERATITNMGAELGATSSIFPSDDITEAWLAAFDREDDFVD----------L 243 (658)
T ss_pred HHHHHhcccCcceEEEEEecCCcCccCHHHHhhhhccchhhCceEEEEcCcHHHHHHHHhcCCchheee----------c
Confidence 999999999999999999999999999999999999999999999999999999999999998665322 1
Q ss_pred cccCCCCCCCCccceEEEEECCCccceeecCCCCCCccccCCcchhhHHhhhccccccCCCCCccccccccccccCCCcc
Q 003793 244 FVDYNEPEQERSYSSYLQLDLADVEPCISGPKRPHDRVPLKDMKADWHACLENQVGFKGFAVPKQEQDKVAKFSFHGQPA 323 (795)
Q Consensus 244 ~~~~~~~D~~a~Y~~vieiDLs~leP~VA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~ 323 (795)
.+|++|.|+++++||||+|||+||+|++|||++||+|++. +
T Consensus 244 -----~~D~~a~Y~~~i~iDls~leP~va~P~~Pd~v~~v~e~~g--------------~-------------------- 284 (658)
T TIGR01342 244 -----LADADAEYADEIEIDLSDLEPLIAEPHMPDNVVPVREIAG--------------I-------------------- 284 (658)
T ss_pred -----cCCCCCcEEEEEEEEccceeeeeeCCCCCCCeeEhHHhCC--------------c--------------------
Confidence 4899999999999999999999999999999999999862 1
Q ss_pred cccCccEEEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCccCCceeEEEecCcHHHHHHHHHcCcHHHHHhcCcEEeccC
Q 003793 324 ELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLEVKPWVKTSLAPGSGVVTKYLQQSGLQKYLNQQGFHIVGYG 403 (795)
Q Consensus 324 ~l~~g~V~~a~IGSCTN~~~~dl~~aA~lLa~~a~~~G~kv~~~V~~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~i~~~g 403 (795)
+|+++|||||||||++||++||++| +|+||+|+||++|+|||++|+++|+++|++++|+++||+|.+||
T Consensus 285 -----~id~v~IGSCTn~~~~Dl~~aA~il------~G~~v~~~v~~~v~PgS~~V~~~~~~~G~~~~l~~aGa~i~~~g 353 (658)
T TIGR01342 285 -----EVDQVMIGSCTNGAFEDLLPAAKLL------EGREVHKDTEFAVAPGSKQALELIAQEGALAEFLAAGANFLEAA 353 (658)
T ss_pred -----eeeeEEEeCCCCCChHHHHHHHHHh------CCCccCCCccEEEeCCcHHHHHHHHHcCcHHHHHHcCCEEeCCC
Confidence 3568999999999999999999999 89999999999999999999999999999999999999999999
Q ss_pred CccccCCCCCCChhhhhhcccCceeEEEEeccCCCCCCCCCCccCCceecChHHHHHHHhccccccCCCCCCCcCCCCCC
Q 003793 404 CTTCIGNSGDLDESVATAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVDIDFEKEPIGTGKDGK 483 (795)
Q Consensus 404 Cg~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~vaA~AlaG~I~~d~~~~plg~~~~G~ 483 (795)
||+|+|+++.+. + ++ ++|||+||||+||||+..+.+|||||+|||||||+|+|+ |+.. ++ +.+|
T Consensus 354 Cg~CiG~~~~~~-~-------~~---~~vst~NRNF~gR~G~~~~~~yLaSP~~vaAsA~~G~i~-dp~~--l~-~~~g- 417 (658)
T TIGR01342 354 CGACIGIGFAPA-S-------DG---VSLRSFNRNFEGRAGIEDAKVYLASPETATAAAIAGEII-DPRD--LA-DDEG- 417 (658)
T ss_pred ccccccCCCCCC-C-------Cc---EEEEccCCCCCccCCCCCCeEEECCHHHHHHHHHcCCcC-CHHH--hc-cccC-
Confidence 999999965432 2 23 479999999999999988889999999999999999993 4432 22 1233
Q ss_pred ccccccC-CCChHHHHHHhhccCCcchhhhccccccCCCcccccccC---CCCCccccCCCCccccCCCCCCCCCCCCCC
Q 003793 484 GVYFKDI-WPSNEEIAEVVQSSVLPDMFKSTYEAITKGNPMWNQLSV---PTSTLYSWDPNSTYIHEPPYFKNMTMEPPG 559 (795)
Q Consensus 484 ~v~l~di-~P~~~ei~~~~~~~v~p~~~~~~y~~~~~~~~~w~~l~~---~~~~~~~w~~~st~i~~pp~f~~~~~~~~~ 559 (795)
|+ ||+.++ |+.|...|+..+ |+.++. ++.+++ .|+||+++|+|++++
T Consensus 418 -----~~~~p~~~~----------p~~~~~~~~~~~-----~~~~~~~~~~~~~~~----~~p~i~~~p~~~~~~----- 468 (658)
T TIGR01342 418 -----DLEAIGFEM----------GEKFPGGYDAAD-----IDIIPKEEREDDDII----KGPNIKPLPEFDPLG----- 468 (658)
T ss_pred -----cccCCCCCC----------chhhcccccccc-----cccCCCCCCCCccee----eCCCCCCCCCCCCCc-----
Confidence 34 776542 444544454433 655543 333344 389999999998875
Q ss_pred CCCCccceEEeecCCCCcccccccCCCCCCCChHhhHHHHcCCCccccccccCCCCChhhcccccccchhhhhhhcCCCC
Q 003793 560 PHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLLERGVDRKDFNSYGSRRGNDEVMARGTFANIRIVNKLLNGEV 639 (795)
Q Consensus 560 ~~~i~~a~vL~~~gd~itTD~I~PaG~i~~~s~a~~~L~~~g~~~~~~n~yg~rr~n~evm~rg~F~n~r~~n~~~~~~~ 639 (795)
.++++ |+++++|||||||||+|||. .||.+ |+|.+.+.+++|...
T Consensus 469 -~~i~g-rv~~~~gDnI~TD~I~Pa~~--------~~l~~--------------r~~~~~l~~~~~~~~----------- 513 (658)
T TIGR01342 469 -ADIEG-ETALIMEDNITTDHIIPAGA--------DILKF--------------RSNIEAISEFTLHRI----------- 513 (658)
T ss_pred -cccCc-eEEEEcCCCCChhcCCCCCc--------ccccc--------------CCCHHHHhhheeeCC-----------
Confidence 35665 99999999999999999874 24532 667777777777532
Q ss_pred CCceeecCCCcccccccHHHHHHHcCCceEEEeCCccCCCCchhhhhhhhhhcCeeEEEecchhHHHhhhhccCcccccc
Q 003793 640 GPKTVHIPTGEKLYVFDAAMRYKAAGHETIVLAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLC 719 (795)
Q Consensus 640 g~~t~~~p~~~~~~v~~~a~~y~~~g~~~iiVaG~NfG~GSSRE~Aa~a~~~lGv~aVIA~SFarI~~~Nlin~Gilpl~ 719 (795)
+.+ +.+++++|++.+.++|||||+||||||||||||+++++|||+||||+||+|||+|||+|+|||||+
T Consensus 514 --------~p~---f~~~~~~~~~~~~~~iiVaG~nfG~GSSREhAa~a~~~lGv~aVIA~SFarIf~~N~in~Gllpl~ 582 (658)
T TIGR01342 514 --------DDE---FAERAKAADEKGKAGIIIAGENYGQGSSREHAALAPMFLGVEAVIAKSFARIHHANLFNFGILPLE 582 (658)
T ss_pred --------Cch---HHHHhhcccccCCceEEEcCCcCCCCccHHHHHHHHHHHCCCEEEEecHHHHHHhhhhhcCcceEE
Confidence 111 235778898888899999999999999999999999999999999999999999999999999999
Q ss_pred cCCccchhhcccCCCceEEEe--cCCccccCCCCceEEE-EcCCCeEEEEEecCCCHHHHHHHHhcChHHHHHHHhhc
Q 003793 720 FKPGEDADTLGLAGHERYTIN--LPNKVSEIRPGQDITV-TTDTGKSFTCTVRFDTEVELAYFDHGGILPYVIRNLIK 794 (795)
Q Consensus 720 ~~~~~~~~~l~~~~~~~~~id--l~~~~~~~~~g~~v~v-~~~~g~~~~~~~~~~~~~e~~~~~aGGll~~v~~~~~~ 794 (795)
|+++++++.+. .+++++|+ +.+ .+.+|++..+ +..+|.++.+...+ ++.|++|+++||+|||++++..+
T Consensus 583 ~~d~~~~~~i~--~Gd~l~id~~l~~---~~~~g~~~~i~~~~~g~~~~~~~~l-~~~e~ei~~aGGlln~~~~~~~~ 654 (658)
T TIGR01342 583 FDNEEDYAKFE--LGDDIEIPDDLAA---ALADGEDEFTINKNDDEEALATLDA-SEREKEILAAGGKLNLIKNKHRE 654 (658)
T ss_pred ecChhhHHHhC--CCCEEEECchhhh---hcCCCCceEEEEecCCeEEEEeCCC-CHHHHHHHHcCCHHHHHHHhhcc
Confidence 99888888764 37788887 554 4778864444 34566666666444 89999999999999999998653
No 12
>TIGR00139 h_aconitase homoaconitase. Homoaconitase, aconitase, and 3-isopropylmalate dehydratase have similar overall structures, but 3-isopropylmalate dehydratase is split into large (leuC) and small (leuD) chains in eubacteria. Several pairs of archaeal proteins resemble leuC and leuD over their lengths but are even closer to the respective domains of homoaconitase, and their identity is uncertain.
Probab=100.00 E-value=1.8e-141 Score=1226.70 Aligned_cols=623 Identities=25% Similarity=0.361 Sum_probs=477.2
Q ss_pred HHhcCCCCCccCCCCceEEEccCCcccCCCCchhHHHHhHHHHHHHhhhhhhhhhhhccccCcceeeCCCCceecccccc
Q 003793 5 MKNLNSDPKKINPLVPVDLVVDHSVQVDVARSENAVQANMEFEFQRNQERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLE 84 (795)
Q Consensus 5 ~~~~g~~~~~~~P~~pv~lv~DH~v~~~~~~~~~a~~~n~~~e~~rn~e~~~fl~~~~~~~~~~~~~~pg~GI~Hqv~~E 84 (795)
+.++|.+ ++++|.. +.+++||++|+... ..+..++.+++|+| +| +|+|+|||+||||||++|
T Consensus 48 ~~~~g~~-~V~~p~~-~v~~~DH~v~~~~~--~~~~~~~~l~~fAk-------------k~-Gi~f~~~g~GI~Hqv~~E 109 (712)
T TIGR00139 48 FMGIGAS-KIHNPDQ-IVMTLDHDIQNKSD--KNLKKYKNIEEFAK-------------KH-GIDFYPAGRGIGHQIMIE 109 (712)
T ss_pred HHHcCCC-ccCCCCC-EEEEcCCCCCCCCH--HHHHHHHHHHHHHH-------------Hh-CCeEECCCCCeEeEeecc
Confidence 4578874 6899986 88999999999643 23334444555554 44 588999999999999999
Q ss_pred cccceeecCCCccccC-eEEecCCCCCccCccccccccccHHHHHHHHccCceeeeCCcEEEEEEeccCCCCCChhhHHH
Q 003793 85 YLGRVVFNTDGILYPD-SVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLTGKLRDGVTATDLVL 163 (795)
Q Consensus 85 ~~a~~v~~~~G~~~P~-~ivGtDSHT~~~GalG~la~GvGg~e~~~~m~g~~~~~~vPevv~V~l~G~l~~gVtakDviL 163 (795)
+|+++|+ ++|||||||||+||||+||||||++|++++|+||++|++|||+|+|+|+|+|++||++|||||
T Consensus 110 ---------~g~a~PG~~ivGsDSHT~t~GalGala~GvG~tDva~amatg~~w~~vPe~v~V~ltG~L~~gV~aKDviL 180 (712)
T TIGR00139 110 ---------EGFAFPGNLAVASDSHSNMYGGLGCLGTPIVRTDAAAIWATGKTWWQIPPVAKVEFKGQLPPGVSGKDIIV 180 (712)
T ss_pred ---------cCcccCCeEEEccCcCcCccchhhheeeccchHHHHHHHhhCCEeccCCCEEEEEEecccCCCCCHHHHHH
Confidence 8899995 689999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCccceEEEEec--CcCCCCCcccchhhcccccccCceeeeeeCChHHHHHHHhcCCChh--------hHHH
Q 003793 164 TVTQMLRKHGVVGKFVEFYG--EGMGQLPLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDE--------TVSM 233 (795)
Q Consensus 164 ~i~~~l~~~G~~g~~vEf~G--~gv~~Ls~~~R~TI~NMa~E~GA~~~~fp~D~~t~~yL~~~gr~~~--------~~~~ 233 (795)
+|+++|+.+|++||+|||+| |||++||+++|||||||++|+||++|+||+|++|++||+.++|... ..+.
T Consensus 181 ~l~~~l~~~g~~g~~iEf~G~~~gv~~Ls~~~R~TI~NM~~E~GA~tgifp~De~t~~yL~~~~~~~~~~~~~~~~~~~~ 260 (712)
T TIGR00139 181 ALCGLFNKDDVLNHAIEFTGSEDSLNALPIDHRLTIANMTTEWGALSGLFPIDKTLIDWLKGKATLAALGLADGPFINPA 260 (712)
T ss_pred HHHHHhccCCcceEEEEEecCcchhhcCCHHHHhhHhhhhHhhCceeeEecCChHHHHHHHhcCcccccccccccccchh
Confidence 99999999999999999999 9999999999999999999999999999999999999999875311 0011
Q ss_pred HHHHHH---HhhhcccCCCCCCCCccceEEEEECCCccceeecCCCCCCccccCCcchhhHHhhhccccccCCCCCcccc
Q 003793 234 IEEYLR---ANKMFVDYNEPEQERSYSSYLQLDLADVEPCISGPKRPHDRVPLKDMKADWHACLENQVGFKGFAVPKQEQ 310 (795)
Q Consensus 234 ~~~y~~---~~~l~~~~~~~D~~a~Y~~vieiDLs~leP~VA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~ 310 (795)
.++|.+ +...|. ...+|++|.|+++++||||+|+|+||+|++|++++||++++.. +
T Consensus 261 ~~r~~~~~~~~~~~~-~l~aD~~A~Y~~~~~iDLs~leP~vA~P~~p~~~~~v~el~~~------------~-------- 319 (712)
T TIGR00139 261 AERFTHPALEEKAEI-PLKADKDAHYAKELFIDLASLSHYVSGPNSVKVANPLKDLEAQ------------D-------- 319 (712)
T ss_pred HHHHHHHHHHHHhhc-cCCCCCCCCEEEEEEEEcccceeeeeCCCCCCCcCcHHHhhhc------------C--------
Confidence 112211 111111 2368999999999999999999999999999999999987310 1
Q ss_pred ccccccccCCCcccccCccEEEEEEecCCCCCCHHHHHHHHHHHHHHHhcC---CccCCceeEEEecCcHHHHHHHHHcC
Q 003793 311 DKVAKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELG---LEVKPWVKTSLAPGSGVVTKYLQQSG 387 (795)
Q Consensus 311 ~~~~~~~~~g~~~~l~~g~V~~a~IGSCTN~~~~dl~~aA~lLa~~a~~~G---~kv~~~V~~~v~PgS~~V~~~l~~~G 387 (795)
-+|++||||||||+|++||+.||.+|.++|+++| +||+|+|+++|+|||++|+++|+++|
T Consensus 320 -----------------~~Id~~~IGSCTN~r~~Dl~~AA~ilk~a~~~~gg~~rkV~p~V~~~v~PgS~~V~~~a~~~G 382 (712)
T TIGR00139 320 -----------------IKIDKAYLVSCTNSRASDIAAAADVFCEAADKNGGKINKIAPGVEFYIAAASIEEEAAAEGNG 382 (712)
T ss_pred -----------------ceeeeEEEecCCCCCcHHHHHHHHHHHhhhhhcCCcccccCCCceEEEeCCCHHHHHHHHHCC
Confidence 1367999999999999999999999988888763 89999999999999999999999999
Q ss_pred cHHHHHhcCcEEeccCCccccCCCCCCChhhhhhcccCceeEEEEeccCCCCCCCCCCccCCceecChHHHHHHHhcccc
Q 003793 388 LQKYLNQQGFHIVGYGCTTCIGNSGDLDESVATAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTV 467 (795)
Q Consensus 388 l~~~l~~aG~~i~~~gCg~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~vaA~AlaG~I 467 (795)
++++|++|||+|.+||||+|+|+++++.+++ ++ +|||+||||+||||++.+.+|||||++||||||+|+|
T Consensus 383 l~~~l~~AGa~i~~~gCg~CiG~~~~~~~~g-------ev---~isT~NRNF~GRmG~~~a~~YLaSP~~vAAsAl~G~I 452 (712)
T TIGR00139 383 AWEKLLEAGAIPLPAGCGPCIGLGAGLLEPG-------EV---GISASNRNFKGRMGSKDAKAYLASPAVVAASALLGKI 452 (712)
T ss_pred cHHHHHHcCCEEcCCccccccCcCCCCCCCC-------CE---EEEecCCCCCCCCCCCCCcEEECCHHHHHHHHhcCcc
Confidence 9999999999999999999999997765443 33 7899999999999998889999999999999999999
Q ss_pred ccCCCCCCCcCCCCCCccccccCCCCh--H---HHHHHhhccCCcchhhhccccc---cCCCcccccccCCCCCccccCC
Q 003793 468 DIDFEKEPIGTGKDGKGVYFKDIWPSN--E---EIAEVVQSSVLPDMFKSTYEAI---TKGNPMWNQLSVPTSTLYSWDP 539 (795)
Q Consensus 468 ~~d~~~~plg~~~~G~~v~l~di~P~~--~---ei~~~~~~~v~p~~~~~~y~~~---~~~~~~w~~l~~~~~~~~~w~~ 539 (795)
+ ||..+.. + +-||.. . .+.......++++++...-..+ ....+.-.....|.
T Consensus 453 t-----dPr~~~~---~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 512 (712)
T TIGR00139 453 S-----GPAEVLS---P----EGWTEIIFGEGDGIKEEDRMLTNEEALEKIIGIIDDLVADEEKNAASEAPA-------- 512 (712)
T ss_pred C-----CHHHHhc---c----cccccccccccccccCcccccCcHHHHhhhhhhccCccccchhcccccccc--------
Confidence 6 5543210 0 001210 0 0000001112222221110000 00000001111111
Q ss_pred CCcccc--CCCCCCCCCCCCCCCCCCccceEEeecCCCCcccccccCCCCCCCChHhhHHHHcCCCccccccccCCCCCh
Q 003793 540 NSTYIH--EPPYFKNMTMEPPGPHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLLERGVDRKDFNSYGSRRGND 617 (795)
Q Consensus 540 ~st~i~--~pp~f~~~~~~~~~~~~i~~a~vL~~~gd~itTD~I~PaG~i~~~s~a~~~L~~~g~~~~~~n~yg~rr~n~ 617 (795)
+..+. ..|.+++ +++....++++++|||||||||+| ++||....++ .
T Consensus 513 -~~~~~~~~~~~~~~-------~~~~i~g~v~~~~gdnI~TD~I~P----------~~~~~~~~~~-------------~ 561 (712)
T TIGR00139 513 -QEESEQGLTEILEG-------FPEEFSGELVFCDADNINTDGIYP----------GKYTYQDDVP-------------K 561 (712)
T ss_pred -cchhccCCCCcCCC-------CCceEEEEEEEcCCCCCchhhccc----------hhhcccCCCC-------------H
Confidence 11111 2233333 345567899999999999999999 5788432222 2
Q ss_pred hhcccccccchhhhhhhcCCCCCCceeecCCCcccccccHHHHHHHcCCceEEEeCCccCCCCchhhhhhhhhhcCeeEE
Q 003793 618 EVMARGTFANIRIVNKLLNGEVGPKTVHIPTGEKLYVFDAAMRYKAAGHETIVLAGAEYGSGSSRDWAAKGPMLLGVKAV 697 (795)
Q Consensus 618 evm~rg~F~n~r~~n~~~~~~~g~~t~~~p~~~~~~v~~~a~~y~~~g~~~iiVaG~NfG~GSSRE~Aa~a~~~lGv~aV 697 (795)
+.|.++.|.+.+ | +++.+++. ++|||||+|||||||||||+|+++++||+||
T Consensus 562 ~~l~~~~~~~~d-----------------p--------~f~~~~~~---g~iiVaG~NfG~GSSREhA~~al~~~Gi~~V 613 (712)
T TIGR00139 562 EKMAQVCMENYD-----------------A--------EFRTKAHE---GDILVSGFNFGCGSSREQAATAILAKGINLV 613 (712)
T ss_pred HHHHHhhccCCC-----------------c--------chhhcCCC---CCEEEeCCccCCCCcHHHHHHHHHHcCCcEE
Confidence 345666666432 1 13344443 4799999999999999999999999999999
Q ss_pred EecchhHHHhhhhccCcccccccCCccchhhcc---------c--CCCceEEEecCCccccCCCCceEEEEcCC----Ce
Q 003793 698 IAKSFERIHRSNLVGMGIIPLCFKPGEDADTLG---------L--AGHERYTINLPNKVSEIRPGQDITVTTDT----GK 762 (795)
Q Consensus 698 IA~SFarI~~~Nlin~Gilpl~~~~~~~~~~l~---------~--~~~~~~~idl~~~~~~~~~g~~v~v~~~~----g~ 762 (795)
||+||+|||+||++|+|||||+|++ ..+.|. + ..|++++||+..+ .|+. ..+ ++
T Consensus 614 iA~SFarIf~rN~iN~Gl~~l~~~~--~~~~l~~~~~~~~~~~~~~~Gd~l~vD~~~g--------~i~~-t~g~~~~~~ 682 (712)
T TIGR00139 614 VSGSFGNIFSRNSINNALLGLEIPA--LIKKLREKFGGADKELTRRTGWFLKWDVADA--------KIEV-QEGSLDGGP 682 (712)
T ss_pred EEchHHHHHHhHHHhcCCceEEchh--HHHHHHhhhcccccccccCCCCEEEEEccCC--------EEEE-CCCcccccc
Confidence 9999999999999999999999975 234432 1 2578899998864 3333 222 22
Q ss_pred EEEEEecCCCHHHHHHHHhcChHHHHHHHh
Q 003793 763 SFTCTVRFDTEVELAYFDHGGILPYVIRNL 792 (795)
Q Consensus 763 ~~~~~~~~~~~~e~~~~~aGGll~~v~~~~ 792 (795)
++.+++...++..++++++|||++|+++++
T Consensus 683 ~~~~~~~~~p~~~~eii~~GGl~~~~k~~~ 712 (712)
T TIGR00139 683 ILEHKVGELGKNLQEIIAKGGLEGWVKNAI 712 (712)
T ss_pred eeEEEcCCCCHHHHHHHHcCCHHHHHHhcC
Confidence 334444334889999999999999999874
No 13
>PRK11413 putative hydratase; Provisional
Probab=100.00 E-value=1.3e-139 Score=1216.65 Aligned_cols=643 Identities=21% Similarity=0.270 Sum_probs=484.4
Q ss_pred HHHhcCCCCCccCCCCceEEEccCCcccCCCCchhHHHHhHHHHHHHhhhhhhhhhhhccccCcceeeCCCCceeccccc
Q 003793 4 AMKNLNSDPKKINPLVPVDLVVDHSVQVDVARSENAVQANMEFEFQRNQERFAFLKWGSSAFHNMLVVPPGSGIVHQVNL 83 (795)
Q Consensus 4 ~~~~~g~~~~~~~P~~pv~lv~DH~v~~~~~~~~~a~~~n~~~e~~rn~e~~~fl~~~~~~~~~~~~~~pg~GI~Hqv~~ 83 (795)
.|+++|.+. + | +|+.+++||++|+...++. |.++|.|++..+++| ++.|+|||+||||||++
T Consensus 74 ~f~~~G~~~--v-p-~~~v~~~DH~~~~~~g~~~-------------n~~~~~~~~~~a~k~-Gi~f~~pg~GI~Hqv~~ 135 (751)
T PRK11413 74 TAKASGMER--F-P-LPYVLTNCHNSLCAVGGTI-------------NEDDHVFGLSAAQKY-GGIFVPPHIAVIHQYMR 135 (751)
T ss_pred HHHHcCCCc--C-C-CCEEEECCCCCcCCCCCCc-------------cHHHHHHHHHHHHHc-CCcEECCCCCeECcCch
Confidence 467788853 3 6 5899999999999755433 334455555555556 46799999999999999
Q ss_pred ccccceeecCCCcccc-CeEEecCCCCCccCccccccccccHHHHHHHHccCceeeeCCcEEEEEEeccCCCCCChhhHH
Q 003793 84 EYLGRVVFNTDGILYP-DSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLTGKLRDGVTATDLV 162 (795)
Q Consensus 84 E~~a~~v~~~~G~~~P-~~ivGtDSHT~~~GalG~la~GvGg~e~~~~m~g~~~~~~vPevv~V~l~G~l~~gVtakDvi 162 (795)
|+|+ .| +++|||||||+ +||||+||||+|++|++.+|+|++||+++||+|+|+|+|+|++||+|||||
T Consensus 136 E~~a----------~PG~~ivGtDSHT~-~GalG~la~GvGgtd~a~~mag~~~~~kvPe~i~V~LtG~l~~gV~aKDvi 204 (751)
T PRK11413 136 EMMA----------GGGKMILGSDSHTR-YGALGTMAVGEGGGELVKQLLNDTYDIDYPGVVAVYLTGKPAPGVGPQDVA 204 (751)
T ss_pred hhcc----------CCCcEEEeeCcCcc-cchhhhceeCCChHHHHHHHhCCeeeccCCCEEEEEEEeecCCCcCHHHHH
Confidence 9655 45 68999999996 899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCc-cceEEEEecCcCCCCCcccchhhcccccccCceeeeeeCChHHHHHHHhcCCChhhHHHHHHHHHHh
Q 003793 163 LTVTQMLRKHGV-VGKFVEFYGEGMGQLPLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVSMIEEYLRAN 241 (795)
Q Consensus 163 L~i~~~l~~~G~-~g~~vEf~G~gv~~Ls~~~R~TI~NMa~E~GA~~~~fp~D~~t~~yL~~~gr~~~~~~~~~~y~~~~ 241 (795)
|+|+++|+.+|+ +||+|||+||||++||+++|||||||++|+|||+||||+|++|++||+.++|.+++.+
T Consensus 205 L~ii~~l~~~G~v~~k~vEF~G~gv~~LS~~~R~TI~NM~~E~GA~~~ifp~De~t~~yL~~~gr~~~~~~--------- 275 (751)
T PRK11413 205 LAIIGAVFKNGYVKNKVMEFVGPGVSALSTDFRNGVDVMTTETTCLSSIWQTDEEVHNWLALHGRGQDYCE--------- 275 (751)
T ss_pred HHHHHHHhhcCcccceEEEEECCccccCCHhHHhhhhhcccccCceEEEecCcHHHHHHHHhCCChhhcee---------
Confidence 999999999999 6999999999999999999999999999999999999999999999999998765321
Q ss_pred hhcccCCCCCCCCccceEEEEECCCccceeecCCCCCCccccCCcchhhHHhhhccccccCCCCCccccccccccccCCC
Q 003793 242 KMFVDYNEPEQERSYSSYLQLDLADVEPCISGPKRPHDRVPLKDMKADWHACLENQVGFKGFAVPKQEQDKVAKFSFHGQ 321 (795)
Q Consensus 242 ~l~~~~~~~D~~a~Y~~vieiDLs~leP~VA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~ 321 (795)
..+|++|.|+++++||||+|+|+||+|++|||++||+|+.+++.++++.. ..++... ..+...++..
T Consensus 276 ------l~~D~~A~Yd~~ieiDLs~leP~VA~P~~Pdnv~~v~e~~~~~~~~~~~~-~~~~~~~----~~~~~~~~~~-- 342 (751)
T PRK11413 276 ------LNPQPMAYYDGCISVDLSAIKPMIALPFHPSNVYEIDELNQNLTDILREV-EIESERV----AHGKAKLSLL-- 342 (751)
T ss_pred ------ccCCCCCCeeEEEEEEcccceeeecCCCChhhCcChhhcccchhhhcchh-hhhhhhh----hhhhcccccc--
Confidence 15899999999999999999999999999999999999999888877642 1111100 0001111111
Q ss_pred ccccc--CccEEEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCccC-CceeEEEecCcHHHHHHHHHcCcHHHHHhcCcE
Q 003793 322 PAELK--HGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLEVK-PWVKTSLAPGSGVVTKYLQQSGLQKYLNQQGFH 398 (795)
Q Consensus 322 ~~~l~--~g~V~~a~IGSCTN~~~~dl~~aA~lLa~~a~~~G~kv~-~~V~~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~ 398 (795)
.+|. .-.|+|+|||||||||++||+.||++| +|++|+ ++||++|+|||++|+++|+++|++++|+++||+
T Consensus 343 -~ki~~~~~~Idq~~IGSCTNg~~eDl~~AA~IL------kgk~v~~~~v~~~V~PgS~~V~~~l~~~G~~~~l~~AGa~ 415 (751)
T PRK11413 343 -DKIENGRLKVQQGIIAGCSGGNYENVIAAANAL------RGQSCGNDTFSLSVYPSSQPVFMDLAKKGVVADLMGAGAI 415 (751)
T ss_pred -ccccCCCcEeeeEEEecCCCCCHHHHHHHHHHh------cCcccCCCceeEEEECCCHHHHHHHHHcCcHHHHHHcCCE
Confidence 0122 236899999999999999999999999 999998 569999999999999999999999999999999
Q ss_pred EeccCCccccCCCCCCChhhhhhcccCceeEEEEeccCCCCCCCCCCccCC-----ceecChHHHHHHHhc-cccccCCC
Q 003793 399 IVGYGCTTCIGNSGDLDESVATAITENDIVAAAVLSGNRNFEGRVHPLTRA-----NYLASPPLVVAYALA-GTVDIDFE 472 (795)
Q Consensus 399 i~~~gCg~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~-----~yLaSP~~vaA~Ala-G~I~~d~~ 472 (795)
|.+||||+|+|+++. +.+ ++ ++|||+||||+||||++.++ +||+||+++||+|+. |+|+
T Consensus 416 i~~~gCgpCiG~~~~-~~~-------ge---~~isTsNRNF~GR~G~~~~~~ylasvyL~sp~~~Aasa~~gG~it---- 480 (751)
T PRK11413 416 IRTAFCGPCFGAGDT-PAN-------NG---LSIRHTTRNFPNREGSKPANGQMSAVALMDARSIAATAANGGYLT---- 480 (751)
T ss_pred ECCCchhhhhCcCCc-CCC-------CC---EEEeecCCCCCCCCCCccccceecccccCCHHHHHHHHHhCCccC----
Confidence 999999999999654 322 33 37899999999999998886 677789999999999 6996
Q ss_pred CCCCcCCCCCCccccccCCCChHHHHHHhhccCCcchhh-hccccccCCCcccccccCCCCCccccCCCCccccCCCCCC
Q 003793 473 KEPIGTGKDGKGVYFKDIWPSNEEIAEVVQSSVLPDMFK-STYEAITKGNPMWNQLSVPTSTLYSWDPNSTYIHEPPYFK 551 (795)
Q Consensus 473 ~~plg~~~~G~~v~l~di~P~~~ei~~~~~~~v~p~~~~-~~y~~~~~~~~~w~~l~~~~~~~~~w~~~st~i~~pp~f~ 551 (795)
+|...+. ++ +. ..+.++..+|. ..|.......+. +++. .+++|++.|-++
T Consensus 481 -~p~~~~~----------~~---~~---p~~~~~~~~y~~~~~~~~~~~~~~---~~~~---------~gPni~~~p~~~ 531 (751)
T PRK11413 481 -SATELDC----------WD---NV---PEYAFDVTPYKNRVYQGFGKGATQ---QPLI---------YGPNIKDWPEMG 531 (751)
T ss_pred -CHHHccc----------cc---cC---CCcccCccccccccccCCCCCCCc---ceEE---------eCcCCCCCCCCC
Confidence 5543320 11 11 01335555553 344322111111 1111 112233333333
Q ss_pred CCCCCCCCCCCCccceEEeecCCCCc-ccccccCCCCCCCChHhhHHHHcCCCccccccccCCCCChhhcccccccchhh
Q 003793 552 NMTMEPPGPHGVKDAYCLLNFGDSIT-TDHISPAGSIHKDSPAAKYLLERGVDRKDFNSYGSRRGNDEVMARGTFANIRI 630 (795)
Q Consensus 552 ~~~~~~~~~~~i~~a~vL~~~gd~it-TD~I~PaG~i~~~s~a~~~L~~~g~~~~~~n~yg~rr~n~evm~rg~F~n~r~ 630 (795)
. +.+-..++|++|+||||| ||||+||| +||++ |||-+.+...+|...
T Consensus 532 ~-------l~~~~~~kv~~k~~D~itTTD~i~paG---------~~l~~--------------Rsn~~~is~~~~~~~-- 579 (751)
T PRK11413 532 A-------LTDNILLKVCSKILDPVTTTDELIPSG---------ETSSY--------------RSNPLGLAEFTLSRR-- 579 (751)
T ss_pred C-------CCCcEEEEEEEEeCCCCccccccccCC---------Ccccc--------------ccCHHHHhhhhcccc--
Confidence 2 334567789999999997 99999997 47775 567777777777532
Q ss_pred hhhhcCCCCC--CceeecCCCcccccccHHHHH--------------HHcCCceEEEeCCccCCCCchhhhhhhhhhcCe
Q 003793 631 VNKLLNGEVG--PKTVHIPTGEKLYVFDAAMRY--------------KAAGHETIVLAGAEYGSGSSRDWAAKGPMLLGV 694 (795)
Q Consensus 631 ~n~~~~~~~g--~~t~~~p~~~~~~v~~~a~~y--------------~~~g~~~iiVaG~NfG~GSSRE~Aa~a~~~lGv 694 (795)
.|.+...... .......+|. +.+.|+.| ++.|.+ +||+|.||||||||||||++|++|||
T Consensus 580 d~~~~~ra~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~iv~~~nyG~GSSREhAAla~r~LGi 655 (751)
T PRK11413 580 DPGYVGRSKAVAELENQRLAGN---VSELTEVFARIKQIAGQEHIDPLQTEIG-SMVYAVKPGDGSAREQAASCQRVLGG 655 (751)
T ss_pred ChhhHHHHHHHhhhhhhhhcCC---cHHHHHHHHhhhhccccccccccccCce-EEEEEeCCCCCccHHHHHHHHHHhCc
Confidence 2322210000 0000011221 12344444 556665 55555999999999999999999999
Q ss_pred eEEEecchhHH-HhhhhccCcccccccCCccchhhcccCCCceEEEecCCccccCCCC-ceE--EEEcCCC--eEEEEEe
Q 003793 695 KAVIAKSFERI-HRSNLVGMGIIPLCFKPGEDADTLGLAGHERYTINLPNKVSEIRPG-QDI--TVTTDTG--KSFTCTV 768 (795)
Q Consensus 695 ~aVIA~SFarI-~~~Nlin~Gilpl~~~~~~~~~~l~~~~~~~~~idl~~~~~~~~~g-~~v--~v~~~~g--~~~~~~~ 768 (795)
+||||+||||| ||+||||+|||||+|.+.. .+..+++++|+.... .+..+ ..+ .+...+| +.+.+.+
T Consensus 656 ~AVIAkSFARIf~RsNlIN~GilpL~f~~~~-----~i~~GD~l~id~~~~--~l~~~~~~~~~~i~~~~~~~~~~~~~~ 728 (751)
T PRK11413 656 LANIAEEYATKRYRSNVINWGMLPFQMAEEP-----TFEVGDYIYIPGIRA--ALDNPGTTFKGYVIHEDAPVTEITLYM 728 (751)
T ss_pred eEEEEeeehHHHHhhhhhhcCccceecCchh-----hCCCCCEEEEechhh--hhhcCCCceeEEEEeCCCceeeEEEEe
Confidence 99999999999 5559999999999998642 356788999986532 23322 222 3333443 4455554
Q ss_pred cCCCHHHHHHHHhcChHHHHHHH
Q 003793 769 RFDTEVELAYFDHGGILPYVIRN 791 (795)
Q Consensus 769 ~~~~~~e~~~~~aGGll~~v~~~ 791 (795)
...++.|++||++||+|||++++
T Consensus 729 ~~l~~~~~eil~aGGllny~k~~ 751 (751)
T PRK11413 729 ESLTAEEREIIKAGCLINYNKNR 751 (751)
T ss_pred CCCCHHHHHHHHcCCHHHHhhcC
Confidence 22389999999999999999863
No 14
>KOG0453 consensus Aconitase/homoaconitase (aconitase superfamily) [Energy production and conversion; Amino acid transport and metabolism]
Probab=100.00 E-value=4.1e-133 Score=1102.29 Aligned_cols=655 Identities=31% Similarity=0.497 Sum_probs=542.1
Q ss_pred CceEEEccCCcccCCCCchhHHHHhHHHHHHHhhhhhhhhhhhccccCcceeeCCCCceecccccccccceeecCCCccc
Q 003793 19 VPVDLVVDHSVQVDVARSENAVQANMEFEFQRNQERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLEYLGRVVFNTDGILY 98 (795)
Q Consensus 19 ~pv~lv~DH~v~~~~~~~~~a~~~n~~~e~~rn~e~~~fl~~~~~~~~~~~~~~pg~GI~Hqv~~E~~a~~v~~~~G~~~ 98 (795)
+|..++|||.+.+...+..| +.+.-+.|+|.|+||..+.++| +|.||+||+||+|||++|+| +|
T Consensus 116 vPstIhCdhli~a~~gg~~D-----l~~a~~~Nkevydfl~saakky-gi~Fw~pGsGIiHQIvlEnY----------Af 179 (778)
T KOG0453|consen 116 VPSTIHCDHLIEAQVGGDKD-----LQRASDLNKEVYDFLESAAKKY-GIGFWKPGSGIIHQIVLENY----------AF 179 (778)
T ss_pred CCceEEecceeeeccCCcch-----hhhhhhhhHHHHHHHHHHHHhc-CCCccCCCCceeeeeeeecc----------cC
Confidence 56679999999987776544 5667799999999999999987 69999999999999999955 57
Q ss_pred cC-eEEecCCCCCccCccccccccccHHHHHHHHccCceeeeCCcEEEEEEeccCCCCCChhhHHHHHHHHHHhcCccce
Q 003793 99 PD-SVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLTGKLRDGVTATDLVLTVTQMLRKHGVVGK 177 (795)
Q Consensus 99 P~-~ivGtDSHT~~~GalG~la~GvGg~e~~~~m~g~~~~~~vPevv~V~l~G~l~~gVtakDviL~i~~~l~~~G~~g~ 177 (795)
|+ ++|||||||+++||||+|++||||+|++++|+++||.++.|++++|+|+|+|+.|+++|||||++.+.|..+|++|+
T Consensus 180 PG~m~igTDSHTpn~GGLG~l~igVggaDAvdvmA~~pWelk~PkvigV~LtG~l~gwtSpKDvIlklagiltvkggtg~ 259 (778)
T KOG0453|consen 180 PGLMMIGTDSHTPNAGGLGCLAIGVGGADAVDVMATQPWELKCPKVIGVKLTGQLPGWTSPKDVILKLAGILTVKGGTGH 259 (778)
T ss_pred CcceEEeccCCCCCCCccceeeeccccchHHHHhcCCCceecCCceEEEEEeeecCCCCChhHHHHhhhceeeecCccce
Confidence 74 78999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred EEEEecCcCCCCCcccchhhcccccccCceeeeeeCChHHHHHHHhcCCChhhHHHHHHHHHHhhhcccCCCCCCCCccc
Q 003793 178 FVEFYGEGMGQLPLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVSMIEEYLRANKMFVDYNEPEQERSYS 257 (795)
Q Consensus 178 ~vEf~G~gv~~Ls~~~R~TI~NMa~E~GA~~~~fp~D~~t~~yL~~~gr~~~~~~~~~~y~~~~~l~~~~~~~D~~a~Y~ 257 (795)
+||||||||.+||++.|+|||||++|.|||+|+||.|+++.+||+.+||.+. .+..++|+++ ++ .+|++|.||
T Consensus 260 iiEy~G~Gv~slSctgm~TIcNMgaEiGAtTs~FP~n~~m~~yL~atgr~~i-a~~a~~~~~~--~l----~AD~~a~Yd 332 (778)
T KOG0453|consen 260 IIEYFGPGVNSLSCTGMATICNMGAEIGATTSLFPYNERMIDYLQATGRNEI-AREARETLDA--IL----AADKGAHYD 332 (778)
T ss_pred eEEEecCccceeccccceeeccccccccccccccCCCHHHHHHHHHhCcccc-hhhhHHhhhh--cc----cCCCCCCcc
Confidence 9999999999999999999999999999999999999999999999999865 3445556655 22 589999999
Q ss_pred eEEEEECCCccceeecCCCCCCccccCCcchhhHHhhhccccccCCCCCccccccccccccCCCcccccCccEEEEEEec
Q 003793 258 SYLQLDLADVEPCISGPKRPHDRVPLKDMKADWHACLENQVGFKGFAVPKQEQDKVAKFSFHGQPAELKHGSVVIAAITS 337 (795)
Q Consensus 258 ~vieiDLs~leP~VA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IGS 337 (795)
++||||||+|+|+|.+|++||-..|++++.+... -+||+.+ |..++|||
T Consensus 333 k~ieIdLstL~P~vnGPfTpdl~~pvskl~e~~~--------------------------kn~wp~~-----i~~gligS 381 (778)
T KOG0453|consen 333 KIIEIDLSTLEPHVNGPFTPDLSTPVSKLGENSE--------------------------KNGWPIK-----IKVGLIGS 381 (778)
T ss_pred eEEEEEhhhcccccCCCCCccccChHHHHhHHhh--------------------------hcCCcee-----eeeeEEEe
Confidence 9999999999999999999999999998874211 1344433 45789999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCccCCceeEEEecCcHHHHHHHHHcCcHHHHHhcCcEEeccCCccccCCCCCCChh
Q 003793 338 CTNTSNPSVMLGAGLVAKKACELGLEVKPWVKTSLAPGSGVVTKYLQQSGLQKYLNQQGFHIVGYGCTTCIGNSGDLDES 417 (795)
Q Consensus 338 CTN~~~~dl~~aA~lLa~~a~~~G~kv~~~V~~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~i~~~gCg~CiG~~g~l~~~ 417 (795)
|||+||+|+-.+|.+ +++|..+|+ ++.|.+.|+|||.||+..+++.|++++|+++|+++++++||||||+|..-
T Consensus 382 CTNSsyeDm~raa~i-v~~a~~~gl--k~~v~F~VtpgSeqirAtierdG~~e~l~~~G~~vLanaCGPCIGqw~r~--- 455 (778)
T KOG0453|consen 382 CTNSSYEDMSRAADI-VKQAKGKGL--KPKVPFYVTPGSEQIRATIERDGIWETLEKAGGIVLANACGPCIGQWDRK--- 455 (778)
T ss_pred ecCccHHHHHHHHHH-HHHHHhcCC--CCCcceEeccChHHhhhhHhhcchHHHHHhcCCEEcccCcCCcccccccc---
Confidence 999999998888776 488887776 55599999999999999999999999999999999999999999998551
Q ss_pred hhhhcccCceeEEEEeccCCCCCCCCCCcc-CCceecChHHHHHHHhccccccCCCCCCCcCCCCCCccccccCCCChHH
Q 003793 418 VATAITENDIVAAAVLSGNRNFEGRVHPLT-RANYLASPPLVVAYALAGTVDIDFEKEPIGTGKDGKGVYFKDIWPSNEE 496 (795)
Q Consensus 418 ~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~-~~~yLaSP~~vaA~AlaG~I~~d~~~~plg~~~~G~~v~l~di~P~~~e 496 (795)
-+++||.- +.|+|+||||.|||+.+. ...||+||++|+|+||+|++.+|+++|.+ .+++|+.+.++. |..+|
T Consensus 456 ---dvk~GE~n-tivts~NRNFtgRnd~np~t~afltSP~iVtA~aiaG~l~fnp~td~l-~~~dg~~fk~~~--p~g~~ 528 (778)
T KOG0453|consen 456 ---DIKKGEKN-TIVTSYNRNFTGRNDANPATHAFLTSPEIVTALAIAGDLSFNPETDSL-TAPDGKAFKLEP--PIGDE 528 (778)
T ss_pred ---cccCCCcC-ceeeeecccccccCCCCcchhhcccCHHHHHHHHHhccccCCCccccc-ccCCcccccccC--CcCCC
Confidence 13344542 358999999999998766 45799999999999999999999999988 578899998875 66666
Q ss_pred HHHHhhccCCcchhhhccccccCCCcccccccCCCCCccccCCCCccccCCCCCCCCCCCCCCCCCCccceEEeecCCCC
Q 003793 497 IAEVVQSSVLPDMFKSTYEAITKGNPMWNQLSVPTSTLYSWDPNSTYIHEPPYFKNMTMEPPGPHGVKDAYCLLNFGDSI 576 (795)
Q Consensus 497 i~~~~~~~v~p~~~~~~y~~~~~~~~~w~~l~~~~~~~~~w~~~st~i~~pp~f~~~~~~~~~~~~i~~a~vL~~~gd~i 576 (795)
+.+ +-++|. ...|+.. +.- . +...+..||+|..++....|+. +...|.++..||+|+..+|
T Consensus 529 lp~---~g~d~g--~~ty~ap----~~~----~-~~~~v~v~p~s~rlqlLepF~~-----w~gkd~edl~ilikv~gkC 589 (778)
T KOG0453|consen 529 LPK---KGFDPG--QDTYQAP----PSS----S-SVVEVDVDPTSDRLQLLEPFDK-----WDGKDLEDLKILIKVKGKC 589 (778)
T ss_pred Ccc---cccCCC--cccccCC----CCC----C-CcceeecCCcccchhhcCCCCc-----ccccccccceEEEEEeccc
Confidence 532 223331 1222211 100 0 0134567889998887777753 4557889999999999999
Q ss_pred cccccccCCCCCCCChHhhHHHHcCCCccccccccCCCCChhhcccccccchhhhhhhcCCCCCCceeecCCCccccccc
Q 003793 577 TTDHISPAGSIHKDSPAAKYLLERGVDRKDFNSYGSRRGNDEVMARGTFANIRIVNKLLNGEVGPKTVHIPTGEKLYVFD 656 (795)
Q Consensus 577 tTD~I~PaG~i~~~s~a~~~L~~~g~~~~~~n~yg~rr~n~evm~rg~F~n~r~~n~~~~~~~g~~t~~~p~~~~~~v~~ 656 (795)
||||||-||+ ||+++|+-+.-.|.+---.-|-|.|- .| .-.+..+||...+.+
T Consensus 590 ttDhIsaaGp---------wlkY~Ghl~nisnn~~igain~En~e---------~n---------~~~n~~~ge~~~vp~ 642 (778)
T KOG0453|consen 590 TTDHISAAGP---------WLKYRGHLENISNNDLIGAINKENGE---------AN---------CVKNYLTGEFGTVPD 642 (778)
T ss_pred CccccccCCc---------ceeccchhhhcccchhhhhcchhhhh---------hh---------hhhhccccccCCcCc
Confidence 9999999974 99998876555543310011222111 11 122335788889999
Q ss_pred HHHHHHHcCCceEEEeCCccCCCCchhhhhhhhhhcCeeEEEecchhHHHhhhhccCcccccccCCccchhhcccCCCce
Q 003793 657 AAMRYKAAGHETIVLAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDADTLGLAGHER 736 (795)
Q Consensus 657 ~a~~y~~~g~~~iiVaG~NfG~GSSRE~Aa~a~~~lGv~aVIA~SFarI~~~Nlin~Gilpl~~~~~~~~~~l~~~~~~~ 736 (795)
.|+.||+.|.+||+|+++|||.||||||||..|+.+|+++||.+||+|||++||+|+|+|||+|.++.+|++|. ..+.
T Consensus 643 ~~~~yk~~g~~wvvv~~~NyGeGSsREhAAlepr~lGg~~ii~kSFarIhetNlkkqglLpLtfanpadydKi~--~~d~ 720 (778)
T KOG0453|consen 643 TARDYKKHGIRWVVVGDENYGEGSSREHAALEPRHLGGRAIITKSFARIHETNLKKQGLLPLTFANPADYDKIR--PADK 720 (778)
T ss_pred hhhhHHhcCceeEEEcccccCCCcchhhhhhchhhcCCcEEEeehhHHHHHhhhhhcceeeeeccCHHHhhhcC--hhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999974 3333
Q ss_pred EEEecCCccccCCCCceEEE--EcCCCeEEEEEecCC-CHHHHHHHHhcChHHHHHHH
Q 003793 737 YTINLPNKVSEIRPGQDITV--TTDTGKSFTCTVRFD-TEVELAYFDHGGILPYVIRN 791 (795)
Q Consensus 737 ~~idl~~~~~~~~~g~~v~v--~~~~g~~~~~~~~~~-~~~e~~~~~aGGll~~v~~~ 791 (795)
+++ . ++.++.||+++++ +..+|++++.++.+. +..|++|+++|..||++++.
T Consensus 721 ~~~--~-~L~~~~~gkp~t~~vt~~dg~~~~~kl~ht~n~~Qi~~fkaGsaln~~~e~ 775 (778)
T KOG0453|consen 721 VSI--K-GLTRRTPGKPLTVVVTKKDGKEVEIKLNHTGNKLQIEWFKAGSALNVMKEL 775 (778)
T ss_pred cch--h-hhhhhcCCCceeEEEECCCCcEEEEecccccchhhhHhhhcchHHHHHHHh
Confidence 333 2 2446778887665 456788888877664 79999999999999988753
No 15
>cd01586 AcnA_IRP Aconitase A catalytic domain. Aconitase A catalytic domain. This is the major form of the TCA cycle enzyme aconitate hydratase, also known as aconitase and citrate hydrolyase. It includes bacterial and archaeal aconitase A, and the eukaryotic cytosolic form of aconitase. This group also includes sequences that have been shown to act as an iron-responsive element (IRE) binding protein in animals and may have the same role in other eukaryotes.
Probab=100.00 E-value=7e-124 Score=1019.09 Aligned_cols=382 Identities=77% Similarity=1.228 Sum_probs=370.5
Q ss_pred ChHHHHhcCCCCCccCCCCceEEEccCCcccCCCCchhHHHHhHHHHHHHhhhhhhhhhhhccccCcceeeCCCCceecc
Q 003793 1 MRDAMKNLNSDPKKINPLVPVDLVVDHSVQVDVARSENAVQANMEFEFQRNQERFAFLKWGSSAFHNMLVVPPGSGIVHQ 80 (795)
Q Consensus 1 ~r~~~~~~g~~~~~~~P~~pv~lv~DH~v~~~~~~~~~a~~~n~~~e~~rn~e~~~fl~~~~~~~~~~~~~~pg~GI~Hq 80 (795)
|||+++++|+||+++||.+|++|++||++|++..+..++..+|+.++++||+|||.|++|++++|.+++|+|||+|||||
T Consensus 19 ~R~~~~~~g~d~~~~~p~~p~~l~~DH~v~~~~~~~~~~~~~~~~~~~~~N~e~~~~~~~~~~~~~~~~~~~pg~GI~Hq 98 (404)
T cd01586 19 MRDAVKRLGGDPEKINPLIPVDLVIDHSVQVDFYGTADALAKNMKLEFERNRERYEFLKWGQKAFKNLRVVPPGTGIIHQ 98 (404)
T ss_pred HHHHHHHhCCChhhcCCCCCcceEcCCCCCCCCccccCHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCCCCCCCCCEeee
Confidence 89999999999999999999999999999999988889999999999999999999999999999999999999999999
Q ss_pred cccccccceee----cCCCccccCeEEecCCCCCccCccccccccccHHHHHHHHccCceeeeCCcEEEEEEeccCCCCC
Q 003793 81 VNLEYLGRVVF----NTDGILYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLTGKLRDGV 156 (795)
Q Consensus 81 v~~E~~a~~v~----~~~G~~~P~~ivGtDSHT~~~GalG~la~GvGg~e~~~~m~g~~~~~~vPevv~V~l~G~l~~gV 156 (795)
|++|+||++++ +++|+++|+++|||||||||+||||+||||||++|++.+|+||++||++||+|+|+|+|+|++||
T Consensus 99 v~~E~~a~~~~~~~~~~~g~~~P~~ivg~DSHT~t~GalGala~GvG~te~~~~ma~~~~~~~vP~~i~V~l~G~l~~gV 178 (404)
T cd01586 99 VNLEYLARVVFTSEEDGDGVAYPDSVVGTDSHTTMINGLGVLGWGVGGIEAEAVMLGQPISMLLPEVVGVKLTGKLRPGV 178 (404)
T ss_pred ehhhhcccceeecccCCCceEeeeeEeecCCCCccCCcccceEecccHHHHHHHHhCCccccCCCcEEEEEEEeecCCCc
Confidence 99999999998 45689999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHhcCccceEEEEecCcCCCCCcccchhhcccccccCceeeeeeCChHHHHHHHhcCCChhhHHHHHH
Q 003793 157 TATDLVLTVTQMLRKHGVVGKFVEFYGEGMGQLPLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVSMIEE 236 (795)
Q Consensus 157 takDviL~i~~~l~~~G~~g~~vEf~G~gv~~Ls~~~R~TI~NMa~E~GA~~~~fp~D~~t~~yL~~~gr~~~~~~~~~~ 236 (795)
++|||||+|+++|+.+|++|++|||+|||+++||+++|||||||++|+|||+||||+|
T Consensus 179 taKDviL~li~~l~~~G~~g~~iEf~G~gi~~LS~~~R~Ti~NMa~E~GA~~gif~~D---------------------- 236 (404)
T cd01586 179 TATDLVLTVTQMLRKVGVVGKFVEFFGPGVAKLSVADRATIANMAPEYGATCGFFPVD---------------------- 236 (404)
T ss_pred CHHHHHHHHHHHhCcCCccceEEEEECcccccccHhHhhhhhccchhhCceeeEeccC----------------------
Confidence 9999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHhhhcccCCCCCCCCccceEEEEECCCccceeecCCCCCCccccCCcchhhHHhhhccccccCCCCCcccccccccc
Q 003793 237 YLRANKMFVDYNEPEQERSYSSYLQLDLADVEPCISGPKRPHDRVPLKDMKADWHACLENQVGFKGFAVPKQEQDKVAKF 316 (795)
Q Consensus 237 y~~~~~l~~~~~~~D~~a~Y~~vieiDLs~leP~VA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 316 (795)
+++++||||+|||+||+|++|||++||.
T Consensus 237 --------------------d~~i~iDls~leP~Va~P~~Pd~v~~v~-------------------------------- 264 (404)
T cd01586 237 --------------------TQVVELDLSTVEPSVSGPKRPQDRVPLH-------------------------------- 264 (404)
T ss_pred --------------------ceEEEEEcccceeeecCCCCcccccCcC--------------------------------
Confidence 5679999999999999999999999982
Q ss_pred ccCCCcccccCccEEEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCccCCceeEEEecCcHHHHHHHHHcCcHHHHHhcC
Q 003793 317 SFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLEVKPWVKTSLAPGSGVVTKYLQQSGLQKYLNQQG 396 (795)
Q Consensus 317 ~~~g~~~~l~~g~V~~a~IGSCTN~~~~dl~~aA~lLa~~a~~~G~kv~~~V~~~v~PgS~~V~~~l~~~Gl~~~l~~aG 396 (795)
++|++||||||||||+||++.||++|+|||+.+|+||+||||++|+|||++|+++|+++|++++|.++|
T Consensus 265 -----------~~Id~v~IGSCTNgr~eDl~~aA~iL~~~a~~kG~kv~~~V~~~v~PgS~~V~~~~~~~Gl~~~l~~aG 333 (404)
T cd01586 265 -----------GSVVIAAITSCTNTSNPSVMLAAGLLAKKAVELGLKVKPYVKTSLAPGSRVVTKYLEASGLLPYLEKLG 333 (404)
T ss_pred -----------CcEeEEEEEcCCCCCCHHHHHHHHHHHHHHHhcCCccCCCccEEEeCCCHHHHHHHHHCChHHHHHHcC
Confidence 137799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEeccCCccccCCCCCCChhhhhhcccCceeEEEEeccCCCCCCCCCCccCCceecChHHHHHHHhcccc
Q 003793 397 FHIVGYGCTTCIGNSGDLDESVATAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTV 467 (795)
Q Consensus 397 ~~i~~~gCg~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~vaA~AlaG~I 467 (795)
|+|.+||||+|+|+++++.+.++..+.+|++++++|||+||||+||||+..+++|||||++|||+||+|+|
T Consensus 334 a~v~~pgCg~CiG~~g~~~~~~~~~~~~ge~~~~~vsT~NRNF~GR~G~~~~~vyLaSP~~vAAsAi~G~i 404 (404)
T cd01586 334 FHVVGYGCTTCIGNSGPLPEEVEEAIKENDLVVAAVLSGNRNFEGRIHPLVRANYLASPPLVVAYALAGTV 404 (404)
T ss_pred CEEcCCcchhccCCCCCCCchhhhhccCCCeEEEEEeccCCCCCCCCCCCcCceEECCHHHHHHHHhcccC
Confidence 99999999999999999888888889999998889999999999999999999999999999999999986
No 16
>TIGR00170 leuC 3-isopropylmalate dehydratase, large subunit. Several pairs of archaeal proteins resemble the leuC and leuD pair in length and sequence but even more closely resemble the respective domains of homoaconitase, and their identity is uncertain. These homologs are now described by a separate model of subfamily (rather than equivalog) homology type, and the priors and cutoffs for this model have been changed to focus this equivalog family more narrowly.
Probab=100.00 E-value=2.6e-115 Score=976.25 Aligned_cols=414 Identities=25% Similarity=0.393 Sum_probs=365.7
Q ss_pred HHHHhcCCCCCccCCCCceEEEccCCcccCCC--CchhHHHHhHHHHHHHhhhhhhhhhhhccccCcceeeCCCCceecc
Q 003793 3 DAMKNLNSDPKKINPLVPVDLVVDHSVQVDVA--RSENAVQANMEFEFQRNQERFAFLKWGSSAFHNMLVVPPGSGIVHQ 80 (795)
Q Consensus 3 ~~~~~~g~~~~~~~P~~pv~lv~DH~v~~~~~--~~~~a~~~n~~~e~~rn~e~~~fl~~~~~~~~~~~~~~pg~GI~Hq 80 (795)
+.|+++|. ++++|.. +++++||++|++.. ...++...|+.+++++|.++|.+ +| +++.+||+|||||
T Consensus 42 ~~~~~~g~--~v~~p~~-~~~~~DH~vp~~~~~~~~~~~~~~~~~~~~r~~a~~~gi------~~--~~v~~p~~GI~Hq 110 (465)
T TIGR00170 42 EGLRQAGR--KVRRPQK-TFATMDHNIPTQNRDFNIKDEVAKIQVTELEKNCKEFGV------RL--FDLHSVDQGIVHV 110 (465)
T ss_pred HHHHHcCC--CcCCCcC-EEEEeCCCCCCCCccccccCHHHHHHHHHHHHHHHHhCC------ee--eccCCCCCCEeCe
Confidence 35677773 5788985 99999999999763 45667789999999999999875 22 4567899999999
Q ss_pred cccccccceeecCCCcccc-CeEEecCCCCCccCccccccccccHHHHHHHHccCceeeeCCcEEEEEEeccCCCCCChh
Q 003793 81 VNLEYLGRVVFNTDGILYP-DSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLTGKLRDGVTAT 159 (795)
Q Consensus 81 v~~E~~a~~v~~~~G~~~P-~~ivGtDSHT~~~GalG~la~GvGg~e~~~~m~g~~~~~~vPevv~V~l~G~l~~gVtak 159 (795)
|++| +|+++| ++||||||||||+||||+||||||++|++.+|+||++||++||+|+|+|+|+|++||++|
T Consensus 111 v~~E---------~g~~~PG~~ivgtDSHT~t~GalGala~GvG~te~~~~l~tg~~~~~vPe~v~V~l~G~l~~gV~aK 181 (465)
T TIGR00170 111 MGPE---------QGLTLPGMTIVCGDSHTSTHGAFGALAFGIGTSEVEHVLATQTLKQARAKTMKIEVDGKLAPGITAK 181 (465)
T ss_pred Eccc---------cCcccCCceEEecCCCccccccccceEEccCHHHHHHHHhCCcEeccCCCEEEEEEEeecCCCcCHH
Confidence 9999 899999 689999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhcCccceEEEEecCcCCCCCcccchhhcccccccCceeeeeeCChHHHHHHHhcCCChhhHHHHHHHHH
Q 003793 160 DLVLTVTQMLRKHGVVGKFVEFYGEGMGQLPLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVSMIEEYLR 239 (795)
Q Consensus 160 DviL~i~~~l~~~G~~g~~vEf~G~gv~~Ls~~~R~TI~NMa~E~GA~~~~fp~D~~t~~yL~~~gr~~~~~~~~~~y~~ 239 (795)
||||+|+++|+.+|++||+|||+|+||++||+++|||||||++|+||++||||+|++|++||+.+++.+. .++|.+
T Consensus 182 DviL~ii~~lg~~G~~g~~vEF~G~gv~~Ls~~~R~Ti~NMa~E~GA~~gi~~~D~~t~~yl~~r~~~~~----~~~~~~ 257 (465)
T TIGR00170 182 DIILAIIGKTGVAGGTGHVIEFCGEAIRDLSMEGRMTVCNMAIEAGARAGLIAPDETTFEYCKGRPHAPK----GKEFDK 257 (465)
T ss_pred HHHHHHHHHhCccCcceEEEEEEccccccccHHHhhhhhhcchhhCceeeEecCChhHHHHHhcCCcccc----hhHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998776542 467888
Q ss_pred HhhhcccCCCCCCCCccceEEEEECCCccceeecCCCCCCccccCCcchhhHHhhhccccccCCCCCccccccccccccC
Q 003793 240 ANKMFVDYNEPEQERSYSSYLQLDLADVEPCISGPKRPHDRVPLKDMKADWHACLENQVGFKGFAVPKQEQDKVAKFSFH 319 (795)
Q Consensus 240 ~~~l~~~~~~~D~~a~Y~~vieiDLs~leP~VA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 319 (795)
++.+|+.. .+|++|.|+++++||||+|+|+||+|++|+|++||+++.++...+.+.. ++......++|+
T Consensus 258 ~~~~~~~l-~~d~~a~Y~~~i~iDls~leP~Va~P~~P~n~~~v~e~~~~~~~~~~~~----------~~~~~~~~~~~~ 326 (465)
T TIGR00170 258 AVAYWKTL-KTDEGAVFDTVITLEANDISPQVTWGTNPGQVLPVNSEVPDPESFADPV----------DKASAERALAYM 326 (465)
T ss_pred HHHhhhhc-cCCCCCceeEEEEEEcccceeeecCCCChhhccCccccCCChhhhcchh----------hhhhhhhhhhhc
Confidence 98898753 6899999999999999999999999999999999999876555433211 111111233344
Q ss_pred CCcc--cccCccEEEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCccCCceeEEEecCcHHHHHHHHHcCcHHHHHhcCc
Q 003793 320 GQPA--ELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLEVKPWVKTSLAPGSGVVTKYLQQSGLQKYLNQQGF 397 (795)
Q Consensus 320 g~~~--~l~~g~V~~a~IGSCTN~~~~dl~~aA~lLa~~a~~~G~kv~~~V~~~v~PgS~~V~~~l~~~Gl~~~l~~aG~ 397 (795)
|... .+.+.+|++||||||||||++||+.||++| +|+||+||||++|+|||++|+++|+++||+++|+++||
T Consensus 327 ~~~~~~~~~~~~Id~~~IGSCTNgr~~dl~aaA~vl------kG~kv~~~V~~~v~PgS~~V~~~~~~~Gl~~~l~~aG~ 400 (465)
T TIGR00170 327 GLEPGTPLKDIKVDKVFIGSCTNSRIEDLRAAAAVI------KGRKVADNVKALVVPGSGLVKLQAEKEGLDKIFIEAGF 400 (465)
T ss_pred cccCCcccCCCeEEEEEEecCCCCCHHHHHHHHHHh------cCCCcCCCccEEEECCCHHHHHHHHHCCcHHHHHHcCC
Confidence 4222 367889999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred EEeccCCccccCCCCCCChhhhhhcccCceeEEEEeccCCCCCCCCCCccCCceecChHHHHHHHhccccc
Q 003793 398 HIVGYGCTTCIGNSGDLDESVATAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVD 468 (795)
Q Consensus 398 ~i~~~gCg~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~vaA~AlaG~I~ 468 (795)
+|.+||||+|+|+++++.++++ + ++||+||||+||||+.. .+|||||++||||||+|+|+
T Consensus 401 ~i~~~gCg~C~G~~~~~~~~ge-------~---~isTsNRNF~GR~G~~~-~~yLaSP~~vAAsAi~G~it 460 (465)
T TIGR00170 401 EWREPGCSMCLGMNNDRLPEGE-------R---CASTSNRNFEGRQGRGG-RTHLVSPAMAAAAAIHGHFV 460 (465)
T ss_pred EEcCCccccccCcCCCCCCCCC-------E---EEEecCCCCCCCCCCCC-CEEEcCHHHHHHHHhCceec
Confidence 9999999999999988765543 2 57999999999999854 67999999999999999996
No 17
>PRK12466 isopropylmalate isomerase large subunit; Provisional
Probab=100.00 E-value=2e-114 Score=970.32 Aligned_cols=413 Identities=28% Similarity=0.407 Sum_probs=366.5
Q ss_pred HHHhcCCCCCccCCCCceEEEccCCcccCCCC---chhHHHHhHHHHHHHhhhhhhhhhhhccccCcceeeCCCCceecc
Q 003793 4 AMKNLNSDPKKINPLVPVDLVVDHSVQVDVAR---SENAVQANMEFEFQRNQERFAFLKWGSSAFHNMLVVPPGSGIVHQ 80 (795)
Q Consensus 4 ~~~~~g~~~~~~~P~~pv~lv~DH~v~~~~~~---~~~a~~~n~~~e~~rn~e~~~fl~~~~~~~~~~~~~~pg~GI~Hq 80 (795)
.|+++|. +++||.+ +.+++||++|++... ..+....|+.+++++|.++|.+. | +++.+||+|||||
T Consensus 44 ~~~~~g~--~v~~P~~-~~~~~DH~vp~~~~~~~~~~~~~~~~~~~~~r~~a~~~gi~------~--~~~~~p~~GI~Hq 112 (471)
T PRK12466 44 GLRARGR--TVRRPDL-TLAVVDHVVPTRPGRDRGITDPGGALQVDYLRENCADFGIR------L--FDVDDPRQGIVHV 112 (471)
T ss_pred HHHHcCC--cccCCCC-eEEEeCCCCCCCccccccccCHHHHHHHHHHHHHHHHcCCe------e--eccCCCCCCEEeE
Confidence 4667774 5899998 569999999998732 34466788899999999988642 2 3557899999999
Q ss_pred cccccccceeecCCCccccC-eEEecCCCCCccCccccccccccHHHHHHHHccCceeeeCCcEEEEEEeccCCCCCChh
Q 003793 81 VNLEYLGRVVFNTDGILYPD-SVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLTGKLRDGVTAT 159 (795)
Q Consensus 81 v~~E~~a~~v~~~~G~~~P~-~ivGtDSHT~~~GalG~la~GvGg~e~~~~m~g~~~~~~vPevv~V~l~G~l~~gVtak 159 (795)
|++| +|+++|+ ++|||||||||+||||+||||||++|++.+|+||++||++||+|+|+|+|+|++||++|
T Consensus 113 v~~E---------~G~~~PG~~ivg~DSHT~t~GalGala~GvG~td~~~~l~tg~~~~~vPetv~V~l~G~l~~gV~aK 183 (471)
T PRK12466 113 VAPE---------LGLTLPGMVIVCGDSHTTTYGALGALAFGIGTSEVEHVLATQTLVYRKPKTMRVRVDGELPPGVTAK 183 (471)
T ss_pred Eccc---------cCcccCCceEEccCCCcCCcChhhheEEccCHHHHHHHHhCCeEEeeCCcEEEEEEEcccCCCcCHH
Confidence 9999 8999996 79999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhcCccceEEEEecCcCCCCCcccchhhcccccccCceeeeeeCChHHHHHHHhcCCChhhHHHHHHHHH
Q 003793 160 DLVLTVTQMLRKHGVVGKFVEFYGEGMGQLPLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVSMIEEYLR 239 (795)
Q Consensus 160 DviL~i~~~l~~~G~~g~~vEf~G~gv~~Ls~~~R~TI~NMa~E~GA~~~~fp~D~~t~~yL~~~gr~~~~~~~~~~y~~ 239 (795)
||||+|+++|+.+|++||+|||+||||++||+++|||||||++|+||++||||+|++|++||+.++|.++. ++|.+
T Consensus 184 DviL~ii~~lg~~G~~g~~iEf~G~~i~~Ls~~~R~Ti~NMa~E~GA~~gi~~~D~~t~~yl~~~~~~~~~----~~~~~ 259 (471)
T PRK12466 184 DLILALIARIGADGATGYAIEFAGEAIRALSMEGRMTLCNMAVEAGARGGLIAPDETTFDYLRGRPRAPKG----ALWDA 259 (471)
T ss_pred HHHHHHHHHhCcCCccceEEEEECCccccCCHHHHhhhhhcccccCceEEEecCChHHHHHHHhCCCchhH----HHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999987653 47888
Q ss_pred HhhhcccCCCCCCCCccceEEEEECCCccceeecCCCCCCccccCCcchhhHHhhhccccccCCCCCccccccccccccC
Q 003793 240 ANKMFVDYNEPEQERSYSSYLQLDLADVEPCISGPKRPHDRVPLKDMKADWHACLENQVGFKGFAVPKQEQDKVAKFSFH 319 (795)
Q Consensus 240 ~~~l~~~~~~~D~~a~Y~~vieiDLs~leP~VA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 319 (795)
++..|+.. .+|++|.|+++++||||+|||+||+|++|+|++||+|+.+++.++++... +......++|+
T Consensus 260 ~~~~~~~~-~~D~~a~Y~~~i~iDls~leP~va~P~~P~n~~~v~e~~~~~~~~~~~~~----------~~~~~~~~~y~ 328 (471)
T PRK12466 260 ALAYWRTL-RSDADAVFDREVEIDAADIAPQVTWGTSPDQAVPITGRVPDPAAEADPAR----------RAAMERALDYM 328 (471)
T ss_pred HHhhhhcc-cCCCCCceEEEEEEEcccceEeecCCCChhhceEccccCcChhhhcchhh----------hhhhhhhhhhc
Confidence 88888653 68999999999999999999999999999999999999988887765321 11111234554
Q ss_pred CCcc--cccCccEEEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCccCCceeEEEecCcHHHHHHHHHcCcHHHHHhcCc
Q 003793 320 GQPA--ELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLEVKPWVKTSLAPGSGVVTKYLQQSGLQKYLNQQGF 397 (795)
Q Consensus 320 g~~~--~l~~g~V~~a~IGSCTN~~~~dl~~aA~lLa~~a~~~G~kv~~~V~~~v~PgS~~V~~~l~~~Gl~~~l~~aG~ 397 (795)
+... .+.+..|+|||||||||||+|||+.||++| +|+||+||||++|+|||++|+++|+++||+++|+++||
T Consensus 329 ~l~~g~~~~~~~Id~~~IGSCTNgr~eDl~~aA~il------kG~kv~~~V~~~v~PgS~~V~~~~~~~Gl~~~~~~aG~ 402 (471)
T PRK12466 329 GLTPGTPLAGIPIDRVFIGSCTNGRIEDLRAAAAVL------RGRKVAPGVRAMVVPGSGAVRRQAEAEGLARIFIAAGF 402 (471)
T ss_pred ccCCCcccCCceEEEEEEeccCCCChHHHHHHHHHH------cCCCCCCCccEEEECCCHHHHHHHHHCCcHHHHHHcCC
Confidence 4322 267789999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred EEeccCCccccCCCCCCChhhhhhcccCceeEEEEeccCCCCCCCCCCccCCceecChHHHHHHHhccccc
Q 003793 398 HIVGYGCTTCIGNSGDLDESVATAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVD 468 (795)
Q Consensus 398 ~i~~~gCg~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~vaA~AlaG~I~ 468 (795)
.|.+||||+|+|+++++.++ +++ +|||+||||+||||+ ...+|||||++||||||+|+|+
T Consensus 403 ~i~~~gCg~C~G~~~~~~~~-------ge~---~vsT~NRNF~GR~G~-~~~~yLaSP~~vAAsAi~G~I~ 462 (471)
T PRK12466 403 EWREPGCSMCLAMNDDVLAP-------GER---CASTTNRNFEGRQGP-GARTHLMSPAMVAAAAVAGHIT 462 (471)
T ss_pred EEcCCccccccCcCCCCCCC-------CCE---EEEecCCCCCCCCCC-CCcEEECCHHHHHHHHhCcEeC
Confidence 99999999999999776544 343 689999999999999 4457999999999999999996
No 18
>cd01584 AcnA_Mitochondrial Aconitase catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Mitochondrial aconitase A catalytic domain. Aconitase (also known as aconitate hydratase and citrate hydro-lyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediary product during the course of the reaction. In eukaryotes two isozymes of aconitase are known to exist: one found in the mitochondrial matrix and the other found in the cytoplasm. This is the mitochondrial form. The mitochondrial product is coded by a nuclear gene. Most members of this subfamily are mitochondrial but there are some bacterial members.
Probab=100.00 E-value=2.2e-114 Score=954.13 Aligned_cols=395 Identities=32% Similarity=0.523 Sum_probs=350.4
Q ss_pred HHHhcCCCCCccCCCCceEEEccCCcccCCCCchhHHHHhHHHHHHHhhhhhhhhhhhccccCcceeeCCCCceeccccc
Q 003793 4 AMKNLNSDPKKINPLVPVDLVVDHSVQVDVARSENAVQANMEFEFQRNQERFAFLKWGSSAFHNMLVVPPGSGIVHQVNL 83 (795)
Q Consensus 4 ~~~~~g~~~~~~~P~~pv~lv~DH~v~~~~~~~~~a~~~n~~~e~~rn~e~~~fl~~~~~~~~~~~~~~pg~GI~Hqv~~ 83 (795)
.|+++|.+ ++++|. ++++||++|++..+.++ ...++.+|.++|+|++|.+++| +|+|++||+||||||++
T Consensus 15 ~f~~~g~~-~v~~p~---~~~~DH~~~~~~~~~~~-----~~~a~~~n~~~~~~~r~~a~~~-gi~~~~~g~GI~Hqv~~ 84 (412)
T cd01584 15 QFMSSGLP-KVAVPS---TIHCDHLIEAQVGGEKD-----LKRAKDINKEVYDFLASAGAKY-GIGFWKPGSGIIHQIVL 84 (412)
T ss_pred HHHHhCCC-CCCCCC---eEEeCCCccccccCCCc-----hhhhhhhhHHHHHHHHHHHHHc-CCeEECCCCCeeceEch
Confidence 46677764 567766 68999999998776544 4667789999999999999998 79999999999999999
Q ss_pred ccccceeecCCCccccC-eEEecCCCCCccCccccccccccHHHHHHHHccCceeeeCCcEEEEEEeccCCCCCChhhHH
Q 003793 84 EYLGRVVFNTDGILYPD-SVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLTGKLRDGVTATDLV 162 (795)
Q Consensus 84 E~~a~~v~~~~G~~~P~-~ivGtDSHT~~~GalG~la~GvGg~e~~~~m~g~~~~~~vPevv~V~l~G~l~~gVtakDvi 162 (795)
|+ +++|+ ++|||||||||+||||+||||||++|++++|+|++|||++||+|+|+|+|+|++||++||||
T Consensus 85 E~----------~~~PG~~ivG~DSHT~t~GalGa~a~GvG~td~~~~m~g~~~~~~vPe~i~v~l~G~l~~gV~aKDli 154 (412)
T cd01584 85 EN----------YAFPGLLMIGTDSHTPNAGGLGGIAIGVGGADAVDVMAGIPWELKCPKVIGVKLTGKLSGWTSPKDVI 154 (412)
T ss_pred hh----------ccCCCCeEEeccCCCCCcChhhheeeccCHHHHHHHHhCCeeccCCCCEEEEEEEcccCCCcCHHHHH
Confidence 94 56785 79999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCccceEEEEecCcCCCCCcccchhhcccccccCceeeeeeCChHHHHHHHhcCCChhhHHHHHHHHHHhh
Q 003793 163 LTVTQMLRKHGVVGKFVEFYGEGMGQLPLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVSMIEEYLRANK 242 (795)
Q Consensus 163 L~i~~~l~~~G~~g~~vEf~G~gv~~Ls~~~R~TI~NMa~E~GA~~~~fp~D~~t~~yL~~~gr~~~~~~~~~~y~~~~~ 242 (795)
|+|+++|+.+|++||+|||+|+|+++||+++|||||||++|+|||+||||+|++|++||+.++|+++ .+++++|+ ++.
T Consensus 155 L~ii~~l~~~G~~~~~vEf~G~gi~~Ls~~~R~Ti~NMa~E~GA~~gi~~~D~~t~~yl~~~~~~~~-~~~~~~y~-~~~ 232 (412)
T cd01584 155 LKVAGILTVKGGTGAIVEYFGPGVDSLSCTGMGTICNMGAEIGATTSVFPYNERMKKYLKATGRAEI-ADLADEFK-DDL 232 (412)
T ss_pred HHHHHHhCcCCcceEEEEEECcccccCChhhhcchhhcchhhCceEEEecCChhHHHHHHhcCchHH-HHHHHHHH-hcc
Confidence 9999999999999999999999999999999999999999999999999999999999999998865 66777776 334
Q ss_pred hcccCCCCCCCCccceEEEEECCCccceeecCCCCCCccccCCcchhhHHhhhccccccCCCCCccccccccccccCCCc
Q 003793 243 MFVDYNEPEQERSYSSYLQLDLADVEPCISGPKRPHDRVPLKDMKADWHACLENQVGFKGFAVPKQEQDKVAKFSFHGQP 322 (795)
Q Consensus 243 l~~~~~~~D~~a~Y~~vieiDLs~leP~VA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~ 322 (795)
+| +|++|.|+++++||||+|||+||+|++|||++||+|+.+.+.. .|++
T Consensus 233 l~-----~D~da~Y~~~i~iDls~leP~va~P~~P~nv~~v~e~~~~~~~--------------------------~g~~ 281 (412)
T cd01584 233 LV-----ADEGAEYDQLIEINLSELEPHINGPFTPDLATPVSKFKEVAEK--------------------------NGWP 281 (412)
T ss_pred cC-----CCCCCCeEEEEEEEcccceEeecCCCChhcCcChhHcChhhhc--------------------------cCCc
Confidence 43 7999999999999999999999999999999999999764321 1111
Q ss_pred ccccCccEEEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCccCCceeEEEecCcHHHHHHHHHcCcHHHHHhcCcEEecc
Q 003793 323 AELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLEVKPWVKTSLAPGSGVVTKYLQQSGLQKYLNQQGFHIVGY 402 (795)
Q Consensus 323 ~~l~~g~V~~a~IGSCTN~~~~dl~~aA~lLa~~a~~~G~kv~~~V~~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~i~~~ 402 (795)
-+|+|||||||||||+|||+.|| .++|+|+++|+|++ ||++|+|||++|+++|+++||+++|.++||.|.+|
T Consensus 282 -----~~Id~a~IGSCTNgr~~Dl~~AA-~ilk~a~~~g~~v~--vr~~v~PgS~~V~~~~~~~Gl~~~l~~aG~~i~~p 353 (412)
T cd01584 282 -----LDLRVGLIGSCTNSSYEDMGRAA-SIAKQALAHGLKCK--SIFTITPGSEQIRATIERDGLLQTFRDAGGIVLAN 353 (412)
T ss_pred -----eeEEEEEEeccCCCChHHHHHHH-HHHhhHHhCCCCCC--CcEEEeCCCHHHHHHHHHCCcHHHHHHcCCEEcCC
Confidence 25789999999999999976666 55699999999998 89999999999999999999999999999999999
Q ss_pred CCccccCCCCC-CChhhhhhcccCceeEEEEeccCCCCCCCC-CCccCCceecChHHHHHHHhcccc
Q 003793 403 GCTTCIGNSGD-LDESVATAITENDIVAAAVLSGNRNFEGRV-HPLTRANYLASPPLVVAYALAGTV 467 (795)
Q Consensus 403 gCg~CiG~~g~-l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~-g~~~~~~yLaSP~~vaA~AlaG~I 467 (795)
|||+|+|++++ ..++ ++.. ++|||+||||+||| |+....+|||||++||||||+|++
T Consensus 354 gCg~C~G~~~~~~~~~-------g~~~-~~vsT~NRNF~GR~gg~~~~~~YLaSP~~vaAsAi~G~~ 412 (412)
T cd01584 354 ACGPCIGQWDRKDIKK-------GEKN-TIVTSYNRNFTGRNDANPATHAFVASPEIVTAMAIAGTL 412 (412)
T ss_pred cccccccCCCCcccCC-------CCce-EEEEecCCCCCCCCCCCCCceEEeCCHHHHHHHHhcccC
Confidence 99999999864 2222 2321 47899999999999 455667999999999999999985
No 19
>PRK05478 isopropylmalate isomerase large subunit; Validated
Probab=100.00 E-value=4.8e-114 Score=967.32 Aligned_cols=414 Identities=26% Similarity=0.395 Sum_probs=367.5
Q ss_pred HHHHhcCCCCCccCCCCceEEEccCCcccCCC--CchhHHHHhHHHHHHHhhhhhhhhhhhccccCcceeeCCCCceecc
Q 003793 3 DAMKNLNSDPKKINPLVPVDLVVDHSVQVDVA--RSENAVQANMEFEFQRNQERFAFLKWGSSAFHNMLVVPPGSGIVHQ 80 (795)
Q Consensus 3 ~~~~~~g~~~~~~~P~~pv~lv~DH~v~~~~~--~~~~a~~~n~~~e~~rn~e~~~fl~~~~~~~~~~~~~~pg~GI~Hq 80 (795)
+.|+++|. ++++|.. +.+++||++|++.. +..++...|+.+++++|.+||.|. | +++.+|++|||||
T Consensus 42 ~~~~~~g~--~v~~p~~-~~~~~DH~v~~~~~~~~~~~~~~~~~~~~~r~~a~~~gi~------~--~~~~~~~~GI~Hq 110 (466)
T PRK05478 42 EGLRLAGR--KVRRPDL-TFATMDHNVPTTDRDLPIADPVSRIQVETLEKNCKEFGIT------L--FDLGDPRQGIVHV 110 (466)
T ss_pred HHHHHcCC--CccCCCC-eEEEcCCCCCCCcccccccCHHHHHHHHHHHHHHHHcCCe------e--eccCCCCCCEeCe
Confidence 35677775 4789996 88999999999875 456677889999999999998772 2 3456788999999
Q ss_pred cccccccceeecCCCcccc-CeEEecCCCCCccCccccccccccHHHHHHHHccCceeeeCCcEEEEEEeccCCCCCChh
Q 003793 81 VNLEYLGRVVFNTDGILYP-DSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLTGKLRDGVTAT 159 (795)
Q Consensus 81 v~~E~~a~~v~~~~G~~~P-~~ivGtDSHT~~~GalG~la~GvGg~e~~~~m~g~~~~~~vPevv~V~l~G~l~~gVtak 159 (795)
+++| +|+++| +++|||||||||+||||+||||||++|++.+|+||++||++||+|+|+|+|+|++||++|
T Consensus 111 v~~E---------~g~~~PG~~ivGtDSHT~t~GalGa~a~GvG~td~a~~m~tg~~~~~vPe~i~V~l~G~l~~gV~aK 181 (466)
T PRK05478 111 VGPE---------QGLTLPGMTIVCGDSHTSTHGAFGALAFGIGTSEVEHVLATQTLLQKKPKTMKIEVDGKLPPGVTAK 181 (466)
T ss_pred Eccc---------cccccCCceEEecCCCccccchhhheEeCCCHHHHHHHHhCCcEeccCCCEEEEEEEeecCCCcCHH
Confidence 9999 889999 699999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhcCccceEEEEecCcCCCCCcccchhhcccccccCceeeeeeCChHHHHHHHhcCCChhhHHHHHHHHH
Q 003793 160 DLVLTVTQMLRKHGVVGKFVEFYGEGMGQLPLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVSMIEEYLR 239 (795)
Q Consensus 160 DviL~i~~~l~~~G~~g~~vEf~G~gv~~Ls~~~R~TI~NMa~E~GA~~~~fp~D~~t~~yL~~~gr~~~~~~~~~~y~~ 239 (795)
||||+|+++|+.+|++|++|||+||||++||+++|+|||||++|+||++||||+|++|++||+.+++.. .+++|.+
T Consensus 182 DviL~ii~~l~~~g~~g~~vEf~G~gv~~Ls~~~R~Ti~NMa~E~GA~~~i~~~De~t~~yl~~r~~~~----~~~~~~~ 257 (466)
T PRK05478 182 DIILAIIGKIGTAGGTGYVIEFAGEAIRALSMEGRMTICNMSIEAGARAGLVAPDETTFEYLKGRPFAP----KGEDWDK 257 (466)
T ss_pred HHHHHHHHHhCcCCcceEEEEEECccccccCHHHHhhhhhcccccCceeeeecCCHhHHHHHhcCCccc----cHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999654332 4678999
Q ss_pred HhhhcccCCCCCCCCccceEEEEECCCccceeecCCCCCCccccCCcchhhHHhhhccccccCCCCCccccccccccccC
Q 003793 240 ANKMFVDYNEPEQERSYSSYLQLDLADVEPCISGPKRPHDRVPLKDMKADWHACLENQVGFKGFAVPKQEQDKVAKFSFH 319 (795)
Q Consensus 240 ~~~l~~~~~~~D~~a~Y~~vieiDLs~leP~VA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 319 (795)
++.+|+.. .+|++|.|+++++||||+|||+||+|++|+|++||+|+.++++++++... +.......+|+
T Consensus 258 a~~~~~~l-~~D~~a~Y~~~i~iDls~leP~va~P~~P~n~~~v~e~~~~~~~~~~~~~----------~~~~~~~~~y~ 326 (466)
T PRK05478 258 AVAYWKTL-KSDEDAVFDKVVTLDAADIEPQVTWGTNPGQVISIDGKVPDPEDFADPVK----------RASAERALAYM 326 (466)
T ss_pred HHHhhhcc-cCCCCCceeEEEEEEcccceeeecCCCChhhceEccccCcChhhhcchhh----------hhhhhhhhhhc
Confidence 99998754 68999999999999999999999999999999999999999888776431 01111223444
Q ss_pred CCcc--cccCccEEEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCccCCceeEEEecCcHHHHHHHHHcCcHHHHHhcCc
Q 003793 320 GQPA--ELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLEVKPWVKTSLAPGSGVVTKYLQQSGLQKYLNQQGF 397 (795)
Q Consensus 320 g~~~--~l~~g~V~~a~IGSCTN~~~~dl~~aA~lLa~~a~~~G~kv~~~V~~~v~PgS~~V~~~l~~~Gl~~~l~~aG~ 397 (795)
+... .+.+.+|+|||||||||||+|||++||++| +|+||+||||++|+|||++|+++|+++|++++|+++||
T Consensus 327 ~~~~g~~~~~~~id~~~IGSCTNg~~~dl~~aA~il------kG~kv~~~V~~~v~PgS~~V~~~~~~~Gl~~~l~~aG~ 400 (466)
T PRK05478 327 GLKPGTPITDIKIDKVFIGSCTNSRIEDLRAAAAVV------KGRKVAPGVRALVVPGSGLVKAQAEAEGLDKIFIEAGF 400 (466)
T ss_pred ccccCCccCCCeEEEEEEecCCCCCcHHHHHHHHHh------cCCCCCCCceEEEECCCHHHHHHHHHCCcHHHHHHcCC
Confidence 3211 267889999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred EEeccCCccccCCCCCCChhhhhhcccCceeEEEEeccCCCCCCCCCCccCCceecChHHHHHHHhccccc
Q 003793 398 HIVGYGCTTCIGNSGDLDESVATAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVD 468 (795)
Q Consensus 398 ~i~~~gCg~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~vaA~AlaG~I~ 468 (795)
.|.+||||+|+|++++..+ +|++ +|||+||||+||||+.. .+|||||++||||||+|+|+
T Consensus 401 ~i~~~gCg~C~G~~~~~l~-------~ge~---~vst~NRNF~GR~G~~~-~~yLaSP~~vaAsAi~G~It 460 (466)
T PRK05478 401 EWREPGCSMCLAMNPDKLP-------PGER---CASTSNRNFEGRQGKGG-RTHLVSPAMAAAAAITGHFV 460 (466)
T ss_pred EEcCCccccccCcCCCCCC-------CCCE---EEEecCCCCCCCCCCCC-CEEEcCHHHHHHHHhCCCcC
Confidence 9999999999999855432 3554 68999999999999655 58999999999999999996
No 20
>cd01583 IPMI 3-isopropylmalate dehydratase catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate. Aconatase-like catalytic domain of 3-isopropylmalate dehydratase and related uncharacterized proteins. 3-isopropylmalate dehydratase catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate 3-isopropylmalate. IPMI is involved in fungal and bacterial leucine biosynthesis and is also found in eukaryotes.
Probab=100.00 E-value=7.3e-113 Score=936.52 Aligned_cols=367 Identities=26% Similarity=0.438 Sum_probs=334.8
Q ss_pred HHHHhcCCCCCccCCCCceEEEccCCcccCCCCchhHHHHhHHHHHHHhhhhhhhhhhhccccCcceeeCC-CCceeccc
Q 003793 3 DAMKNLNSDPKKINPLVPVDLVVDHSVQVDVARSENAVQANMEFEFQRNQERFAFLKWGSSAFHNMLVVPP-GSGIVHQV 81 (795)
Q Consensus 3 ~~~~~~g~~~~~~~P~~pv~lv~DH~v~~~~~~~~~a~~~n~~~e~~rn~e~~~fl~~~~~~~~~~~~~~p-g~GI~Hqv 81 (795)
+.|+++|.+ +++||.+ +.+++||++|++ +....|+.+++.+|.++|. |+++++ |+|||||+
T Consensus 14 ~~~~~~g~~-~v~dp~k-~~~~~DH~vp~~-----~~~~~~~~~~~r~~a~~~g-----------i~~~~~~g~GI~H~v 75 (382)
T cd01583 14 EGLREAGRE-KVWDPEK-IVAVFDHNVPTP-----DIKAAEQVKTLRKFAKEFG-----------INFFDVGRQGICHVI 75 (382)
T ss_pred HHHHHhCCc-ccCCCCc-eEEEcCCCCCCC-----CHHHHHHHHHHHHHHHHhC-----------cccccCCCCCEeeEE
Confidence 567888885 5899997 999999999997 3345666666777766553 344556 89999999
Q ss_pred ccccccceeecCCCcccc-CeEEecCCCCCccCccccccccccHHHHHHHHccCceeeeCCcEEEEEEeccCCCCCChhh
Q 003793 82 NLEYLGRVVFNTDGILYP-DSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLTGKLRDGVTATD 160 (795)
Q Consensus 82 ~~E~~a~~v~~~~G~~~P-~~ivGtDSHT~~~GalG~la~GvGg~e~~~~m~g~~~~~~vPevv~V~l~G~l~~gVtakD 160 (795)
++| +|++.| +++|||||||||+||||+||||||++|++.+|+||++||++||+|+|+|+|+|++||++||
T Consensus 76 ~~E---------~g~~~PG~~ivg~DSHT~t~GalGa~a~GvG~td~a~~latg~~w~~vPeti~v~l~G~l~~gV~aKD 146 (382)
T cd01583 76 LPE---------KGLTLPGMTIVGGDSHTCTHGAFGAFATGIGTTDVAHVLATGKLWFRVPETMRVNVEGKLPPGVTAKD 146 (382)
T ss_pred ecc---------ccEecCCcEEEecCCCcccCCeeeeEEEccCHHHHHHHHhcCCeeeeCCcEEEEEEEeecCCCcCHHH
Confidence 999 788889 6899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCccceEEEEecCcCCCCCcccchhhcccccccCceeeeeeCChHHHHHHHhcCCChhhHHHHHHHHHH
Q 003793 161 LVLTVTQMLRKHGVVGKFVEFYGEGMGQLPLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVSMIEEYLRA 240 (795)
Q Consensus 161 viL~i~~~l~~~G~~g~~vEf~G~gv~~Ls~~~R~TI~NMa~E~GA~~~~fp~D~~t~~yL~~~gr~~~~~~~~~~y~~~ 240 (795)
|||+|+++|+.+|++||+|||+||||++||+++|||||||++|+||++||||+|++|++||+.++|+. .+
T Consensus 147 viL~ii~~lg~~g~~g~~vEf~G~~v~~Ls~~~R~Ti~NMa~E~GA~~gi~~~De~t~~yL~~~~~~~--~~-------- 216 (382)
T cd01583 147 VILYIIGKIGVDGATYKAMEFAGEAIESLSMEERMTLCNMAIEAGAKAGIVAPDETTFEYLKGRGKAY--WK-------- 216 (382)
T ss_pred HHHHHHHHhccCCccceEEEEEcCccccCCHHHHhhHhccccccCceEEEecCChHHHHHHHhcCccc--hh--------
Confidence 99999999999999999999999999999999999999999999999999999999999999998752 11
Q ss_pred hhhcccCCCCCCCCccceEEEEECCCccceeecCCCCCCccccCCcchhhHHhhhccccccCCCCCccccccccccccCC
Q 003793 241 NKMFVDYNEPEQERSYSSYLQLDLADVEPCISGPKRPHDRVPLKDMKADWHACLENQVGFKGFAVPKQEQDKVAKFSFHG 320 (795)
Q Consensus 241 ~~l~~~~~~~D~~a~Y~~vieiDLs~leP~VA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g 320 (795)
.+ .+|++|.|+++++||||+|||+||+|++|||++||+|+++
T Consensus 217 --~~----~~D~~a~Y~~~~~iDls~leP~va~P~~P~nv~~v~e~~~-------------------------------- 258 (382)
T cd01583 217 --EL----KSDEDAEYDKVVEIDASELEPQVAWPHSPDNVVPVSEVEG-------------------------------- 258 (382)
T ss_pred --hc----CCCCCCCEEEEEEEEcccceeeEecCCCccceEECcccCC--------------------------------
Confidence 12 5899999999999999999999999999999999999862
Q ss_pred CcccccCccEEEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCccCCceeEEEecCcHHHHHHHHHcCcHHHHHhcCcEEe
Q 003793 321 QPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLEVKPWVKTSLAPGSGVVTKYLQQSGLQKYLNQQGFHIV 400 (795)
Q Consensus 321 ~~~~l~~g~V~~a~IGSCTN~~~~dl~~aA~lLa~~a~~~G~kv~~~V~~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~i~ 400 (795)
-+|+|||||||||||+|||+.||++| ||+||+|+||++|+|||++|+++|+++|++++|+++||.|.
T Consensus 259 -------~~Id~v~IGSCTNgr~eDl~~AA~iL------kG~kv~~~Vr~~v~P~S~~V~~~~~~~G~~~~l~~aGa~i~ 325 (382)
T cd01583 259 -------IKIDQVFIGSCTNGRLEDLRAAAEIL------KGRKVADGVRLIVVPASQRVYKQAEKEGLIEIFIEAGAEVR 325 (382)
T ss_pred -------cceeEEEEeccCCCChHHHHHHHHHh------cCCCCCCCccEEEECCCHHHHHHHHHCCcHHHHHHCCCEEe
Confidence 13779999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred ccCCccccCCCCCCChhhhhhcccCceeEEEEeccCCCCCCCCCCccCCceecChHHHHHHHhcccc
Q 003793 401 GYGCTTCIGNSGDLDESVATAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTV 467 (795)
Q Consensus 401 ~~gCg~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~vaA~AlaG~I 467 (795)
+||||+|+|+++++..+ |++ +|||+||||+||||+..+.+|||||++||||||+|+|
T Consensus 326 ~pgCg~C~G~~~g~~~~-------ge~---~vsT~NRNF~GRmG~~~~~~yLaSP~~vAAsAi~G~i 382 (382)
T cd01583 326 PPGCGACLGGHMGVLAP-------GER---CVSTSNRNFKGRMGSPGARIYLASPATAAASAITGEI 382 (382)
T ss_pred CCCcccccCCCCCcCCC-------CCE---EEEecCCCCCcCCCCCCCcEEECCHHHHHHHHhcccC
Confidence 99999999998765433 453 6899999999999998889999999999999999986
No 21
>PF00330 Aconitase: Aconitase family (aconitate hydratase); InterPro: IPR001030 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. 3-isopropylmalate dehydratase (or isopropylmalate isomerase; 4.2.1.33 from EC) catalyses the stereo-specific isomerisation of 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate. This enzyme performs the second step in the biosynthesis of leucine, and is present in most prokaryotes and many fungal species. The prokaryotic enzyme is a heterodimer composed of a large (LeuC) and small (LeuD) subunit, while the fungal form is a monomeric enzyme. Both forms of isopropylmalate are related and are part of the larger aconitase family []. Aconitases are mostly monomeric proteins which share four domains in common and contain a single, labile [4Fe-4S] cluster. Three structural domains (1, 2 and 3) are tightly packed around the iron-sulphur cluster, while a fourth domain (4) forms a deep active-site cleft. The prokaryotic enzyme is encoded by two adjacent genes, leuC and leuD, corresponding to aconitase domains 1-3 and 4 respectively [, ]. LeuC does not bind an iron-sulphur cluster. It is thought that some prokaryotic isopropylamalate dehydrogenases can also function as homoaconitase 4.2.1.36 from EC, converting cis-homoaconitate to homoisocitric acid in lysine biosynthesis []. Homoaconitase has been identified in higher fungi (mitochondria) and several archaea and one thermophilic species of bacteria, Thermus thermophilus []. This entry represents a region containing 3 domains, each with a 3-layer alpha/beta/alpha topology. This regions represents the [4Fe-4S] cluster-binding region found at the N-terminal of eukaryotic mAcn, cAcn/IPR1 and IRP2, and bacterial AcnA, but in the C-terminal of bacterial AcnB. This domain is also found in the large subunit of isopropylmalate dehydratase (LeuC). More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0008152 metabolic process; PDB: 1L5J_B 1B0M_A 1B0J_A 1B0K_A 7ACN_A 6ACN_A 5ACN_A 3SNP_B 3SN2_A 2B3Y_A ....
Probab=100.00 E-value=9.6e-114 Score=967.73 Aligned_cols=418 Identities=39% Similarity=0.647 Sum_probs=339.4
Q ss_pred HHHhcCCCCCccCCCCceEEEccCCcccCCCCchhHHHHhHHHHHHHhhhhhhhhhhhccccCcceeeCCCC-ceecccc
Q 003793 4 AMKNLNSDPKKINPLVPVDLVVDHSVQVDVARSENAVQANMEFEFQRNQERFAFLKWGSSAFHNMLVVPPGS-GIVHQVN 82 (795)
Q Consensus 4 ~~~~~g~~~~~~~P~~pv~lv~DH~v~~~~~~~~~a~~~n~~~e~~rn~e~~~fl~~~~~~~~~~~~~~pg~-GI~Hqv~ 82 (795)
.|+++|.. +++|.. +++++||++|++..+. .|+..++++|+++|+|++|.+++|+ +.+++|+. ||||||+
T Consensus 43 ~l~~~g~~--v~~p~~-v~~~~DH~vp~~~~~~-----~~~~~~~~~n~~~~~~l~~~~~~~g-i~~~~~~~~GI~Hqv~ 113 (465)
T PF00330_consen 43 DLRAMGEK--VRDPDK-VVLVIDHSVPADDIGS-----ANLQIEDARNRERYRFLRWFAKEFG-IKFFDPGGPGICHQVL 113 (465)
T ss_dssp HHHHHCHC--CHSTTS-EEEE--SS--BSS-HH-----HHHHHHHHHCHHHHHHHHHHHHHCT-TEEEETTSSBSHHHHH
T ss_pred hHHHCCCc--eecCCC-ceEEecCccccccccc-----hhcchhhHHHHHHHHHHHHHHHHcC-CceecCCCCCeeeeee
Confidence 46777753 679997 9999999999986642 3788899999999999999999985 55555554 9999999
Q ss_pred cccccceeecCCCccccC-eEEecCCCCCccCccccccccccHHHHHHHHccCceeeeCCcEEEEEEeccCCCCCChhhH
Q 003793 83 LEYLGRVVFNTDGILYPD-SVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLTGKLRDGVTATDL 161 (795)
Q Consensus 83 ~E~~a~~v~~~~G~~~P~-~ivGtDSHT~~~GalG~la~GvGg~e~~~~m~g~~~~~~vPevv~V~l~G~l~~gVtakDv 161 (795)
+| .|++.|+ ++||+||||||+||||+||||||++|++++|+||++||++||+|+|+|+|+|++||+||||
T Consensus 114 ~E---------~g~~~PG~~vvg~DSHT~t~GalGa~a~GvG~td~a~~l~tg~~~~~vPetv~V~l~G~l~~gV~aKDv 184 (465)
T PF00330_consen 114 PE---------EGLVLPGMTVVGTDSHTCTYGALGAFATGVGSTDVAAALATGPLWFRVPETVRVELTGKLPPGVTAKDV 184 (465)
T ss_dssp HH---------HTT-STTEEEEESSTTGGGGGGGTSEEEE--HHHHHHHHCTSBEEEE--EEEEEEEES---TT--HHHH
T ss_pred hh---------hccccceeEEEeCCCCcchhhhceeEEeccCHHHHHHHHHhhhhccccCceEEEEEEecCCCCccHHHH
Confidence 99 8889995 7999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCccceEEEEecCcCCCCCcccchhhcccccccCceeeeeeCChHHHHHHHhcCCChhhHHHHHHHHHHh
Q 003793 162 VLTVTQMLRKHGVVGKFVEFYGEGMGQLPLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVSMIEEYLRAN 241 (795)
Q Consensus 162 iL~i~~~l~~~G~~g~~vEf~G~gv~~Ls~~~R~TI~NMa~E~GA~~~~fp~D~~t~~yL~~~gr~~~~~~~~~~y~~~~ 241 (795)
||+|+++|+.+|++||+|||+||||++||+++|||||||++|+||++||||+|++|++||+.++|.+...+..+.|.+.+
T Consensus 185 iL~ii~~lg~~G~~~~~vEf~G~~v~~Ls~~~R~Ti~NMa~E~GA~~g~~~~De~t~~Yl~~~~~~~~~~~~~~~~~~~~ 264 (465)
T PF00330_consen 185 ILHIIGRLGADGATGKAVEFFGPGVESLSMDDRMTICNMAIEMGAKTGIFPPDEKTLEYLRGRGRSPEGEELDEAYAKWQ 264 (465)
T ss_dssp HHHHHHHHHCCTTTTEEEEEESGGGGGS-HHHHHHHHHCGGHHTBSEEEE-B-HHHHHHHHHTTHHHHHHHHHHHHHHHG
T ss_pred HHHHHHhhhhhccCCeEEEEEChhhhhcCHhhhhhhhccccccCceEEEecCcHHHHHHHHhhhhhhHHHHHHHhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999887666666777777
Q ss_pred hhcccCCCCCCCCccceEEEEECCCccceeecCCCCCCccccCCcchhhHHhhhccccccCCCCCccccccccccccCC-
Q 003793 242 KMFVDYNEPEQERSYSSYLQLDLADVEPCISGPKRPHDRVPLKDMKADWHACLENQVGFKGFAVPKQEQDKVAKFSFHG- 320 (795)
Q Consensus 242 ~l~~~~~~~D~~a~Y~~vieiDLs~leP~VA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g- 320 (795)
.|| +|++|.|+++++||||+|+|+||+|++|+|++||+|+.+++.++++.. .. ......++|++
T Consensus 265 ~l~-----~D~dA~Y~~~i~iDls~leP~va~P~~P~~~~~v~e~~~~~~~~~~~v-~~---------~~~~kal~y~~~ 329 (465)
T PF00330_consen 265 GLK-----SDPDAEYDKVIEIDLSELEPQVAGPHSPDNVVPVSEVAPDFASILDPV-ER---------EAAEKALDYMGL 329 (465)
T ss_dssp CSS-------TT---SEEEEEEGGG-SSEEE-SSSTTSEEEHHHHHHHHHHHH-----C---------CGCC-EEEECHT
T ss_pred hcc-----CCCccCeeEEEEEEcCccccccccCCCCcccccccccccccccccccc-cc---------cccccccccccc
Confidence 775 789999999999999999999999999999999999999998776531 11 11122345543
Q ss_pred -CcccccCccEEEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCccCCceeEEEecCcHHHHHHHHHcCcHHHHHhcCcEE
Q 003793 321 -QPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLEVKPWVKTSLAPGSGVVTKYLQQSGLQKYLNQQGFHI 399 (795)
Q Consensus 321 -~~~~l~~g~V~~a~IGSCTN~~~~dl~~aA~lLa~~a~~~G~kv~~~V~~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~i 399 (795)
...++.+.+|++||||||||||+|||++||++|++++. +||+|+|+++|+|||++|+++|+++||+++|+++||+|
T Consensus 330 ~~~~~~~~~~i~~~~IgSCTn~~~~dl~~aA~il~~~~~---~~v~~~v~~~v~PgS~~v~~~~~~~Gl~~~l~~aG~~v 406 (465)
T PF00330_consen 330 KPGQELEGTKIDQAFIGSCTNGRNEDLRAAAGILKGKAV---LKVAPGVKTSVVPGSRQVYEQLEREGLLEILEEAGFEV 406 (465)
T ss_dssp TEEEEEETTBEEEEEEETTTSCTHHHHHHHHHHHHHHHC---TTS-TSSEEEEE-SBHHHHHHHHHTTHHHHHHHTTEEE
T ss_pred cccccccceeeeEEEEcCCcCCCHHHHHHHHHHhhchhh---ccCcceeEEEEcCCCHHHHHHHHHcCCchhhhccceEE
Confidence 23578899999999999999999999999999976665 69999999999999999999999999999999999999
Q ss_pred eccCCccccCCCCCCChhhhhhccc-CceeEEEEeccCCCCCCCCCCccCCceecChHHHHHHHhcc
Q 003793 400 VGYGCTTCIGNSGDLDESVATAITE-NDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAG 465 (795)
Q Consensus 400 ~~~gCg~CiG~~g~l~~~~~~~i~~-~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~vaA~AlaG 465 (795)
.+||||+|+|+++ +.+. +.+ ++ ++|||+||||+||||+..+++|||||++||||||+|
T Consensus 407 ~~~gC~~C~G~~~-~~~~----~~~~~~---~~vst~NRNF~GR~g~~~~~~yLaSP~~vaA~Ai~G 465 (465)
T PF00330_consen 407 RGPGCGPCIGMSG-LPDV----LAPLGE---VCVSTSNRNFEGRMGPKDATVYLASPATVAASAIAG 465 (465)
T ss_dssp --SSSGGGGTSBS---CC----HCCTTE---EEEESSSS-CTTTTTTTTTEEEE--HHHHHHHHHHS
T ss_pred ecCCccEEECCCC-CCcc----cccccc---eEEEecCCCCCCCCCCCcCeEEECCHHHHHHHHhcC
Confidence 9999999999985 2211 122 33 479999999999999999999999999999999998
No 22
>cd01585 AcnA_Bact Aconitase catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Bacterial Aconitase-like catalytic domain. Aconitase (aconitate hydratase or citrate hydrolyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediate product during the course of the reaction. This distinct subfamily is found only in bacteria and Archaea. Its exact characteristics are not known.
Probab=100.00 E-value=1.3e-111 Score=924.04 Aligned_cols=365 Identities=35% Similarity=0.570 Sum_probs=334.7
Q ss_pred HHHHhcCCCCCccCCCCceEEEccCCcccCCCCchhHHHHhHHHHHHHhhhhhhhhhhhccccCcceeeCCCCceecccc
Q 003793 3 DAMKNLNSDPKKINPLVPVDLVVDHSVQVDVARSENAVQANMEFEFQRNQERFAFLKWGSSAFHNMLVVPPGSGIVHQVN 82 (795)
Q Consensus 3 ~~~~~~g~~~~~~~P~~pv~lv~DH~v~~~~~~~~~a~~~n~~~e~~rn~e~~~fl~~~~~~~~~~~~~~pg~GI~Hqv~ 82 (795)
+.|+++|.+ ++++| . +.+++||++|+.. .+|.++|.|++|.+++| +|+|++||+|||||++
T Consensus 15 ~~~~~~g~~-~v~~~-~-~~~~~DH~~p~~~---------------~~~a~~~~~lr~~a~~~-gi~~~~~g~GI~H~v~ 75 (380)
T cd01585 15 LQFEAMGVD-RVRTE-L-SVSYVDHNTLQTD---------------FENADDHRFLQTVAARY-GIYFSRPGNGICHQVH 75 (380)
T ss_pred HHHHHcCCC-eeCCC-C-eEEEeCCCCCCCC---------------hHHHHHHHHHHHHHHHc-CCEEECCCCCeeeeec
Confidence 467888885 46777 4 8899999999953 25667788888888888 6899999999999999
Q ss_pred cccccceeecCCCcccc-CeEEecCCCCCccCccccccccccHHHHHHHHccCceeeeCCcEEEEEEeccCCCCCChhhH
Q 003793 83 LEYLGRVVFNTDGILYP-DSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLTGKLRDGVTATDL 161 (795)
Q Consensus 83 ~E~~a~~v~~~~G~~~P-~~ivGtDSHT~~~GalG~la~GvGg~e~~~~m~g~~~~~~vPevv~V~l~G~l~~gVtakDv 161 (795)
+|+ ++.| +++|||||||||+||||+||||||++|++.+|++|++||++||+|+|+|+|+|++||++|||
T Consensus 76 ~E~----------~~~PG~~ivg~DSHT~t~GalGa~a~GvG~td~~~~latg~~~~~vPetv~V~l~G~l~~gV~aKDv 145 (380)
T cd01585 76 LER----------FAVPGKTLLGSDSHTPTAGGLGMLAIGAGGLDVALAMAGEPYYIPMPKVVGVRLTGELPPWVTAKDV 145 (380)
T ss_pred Hhh----------ccCCCCEEEecCcCcCCCCcccccEEccCHHHHHHHHhCCeEeccCCcEEEEEEEccCCCCcCHHHH
Confidence 994 4456 68999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCccceEEEEecCcCCCCCcccchhhcccccccCceeeeeeCChHHHHHHHhcCCChhhHHHHHHHHHHh
Q 003793 162 VLTVTQMLRKHGVVGKFVEFYGEGMGQLPLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVSMIEEYLRAN 241 (795)
Q Consensus 162 iL~i~~~l~~~G~~g~~vEf~G~gv~~Ls~~~R~TI~NMa~E~GA~~~~fp~D~~t~~yL~~~gr~~~~~~~~~~y~~~~ 241 (795)
||+|+++|+.+|++||+|||+|||+++||+++|||||||++|+||+++|||+|++|++||+.+||.+.+..
T Consensus 146 iL~li~~lg~~g~~~~~iEf~G~~i~~Ls~~~R~Tl~NMa~E~GA~~gi~~~De~t~~yl~~~gr~~~~~~--------- 216 (380)
T cd01585 146 ILELLRRLTVKGGVGKIFEYTGPGVATLSVPERATITNMGAELGATTSIFPSDERTREFLAAQGREDDWVE--------- 216 (380)
T ss_pred HHHHHHHhCcccccceEEEEeCCcccccCHHHHhhhhccccccCceEEEecCcHHHHHHHHhcCCchhccc---------
Confidence 99999999999999999999999999999999999999999999999999999999999999988654321
Q ss_pred hhcccCCCCCCCCccceEEEEECCCccceeecCCCCCCccccCCcchhhHHhhhccccccCCCCCccccccccccccCCC
Q 003793 242 KMFVDYNEPEQERSYSSYLQLDLADVEPCISGPKRPHDRVPLKDMKADWHACLENQVGFKGFAVPKQEQDKVAKFSFHGQ 321 (795)
Q Consensus 242 ~l~~~~~~~D~~a~Y~~vieiDLs~leP~VA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~ 321 (795)
+ .+|++|.|+++++||||+|||+||+|++|+|++||++++.
T Consensus 217 -l-----~~D~~a~Y~~~i~iDls~leP~va~P~~pd~v~pv~~~~g--------------------------------- 257 (380)
T cd01585 217 -L-----AADADAEYDEEIEIDLSELEPLIARPHSPDNVVPVREVAG--------------------------------- 257 (380)
T ss_pred -c-----CCCCCCceEEEEEEEcccceeeecCCCCCCceeEhhhhCC---------------------------------
Confidence 1 4899999999999999999999999999999999999862
Q ss_pred cccccCccEEEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCccCCceeEEEecCcHHHHHHHHHcCcHHHHHhcCcEEec
Q 003793 322 PAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLEVKPWVKTSLAPGSGVVTKYLQQSGLQKYLNQQGFHIVG 401 (795)
Q Consensus 322 ~~~l~~g~V~~a~IGSCTN~~~~dl~~aA~lLa~~a~~~G~kv~~~V~~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~i~~ 401 (795)
-+|+|||||||||||+|||++||++| ||+||+|+||++|+|||++|+++|+++|++++|+++||.|.+
T Consensus 258 ------~~Id~~~IGSCTngr~eDl~~aA~iL------kG~kv~~~V~~~v~P~S~~V~~~a~~~Gl~~~l~~aGa~i~~ 325 (380)
T cd01585 258 ------IKVDQVAIGSCTNSSYEDLMTVAAIL------KGRRVHPHVSMVVAPGSKQVLEMLARNGALADLLAAGARILE 325 (380)
T ss_pred ------ceEEEEEEecCCCCCcHHHHHHHHHH------cCCCCCCCceEEEECCCHHHHHHHHHCCcHHHHHHcCCEEeC
Confidence 13789999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred cCCccccCCCCCCChhhhhhcccCceeEEEEeccCCCCCCCCCCccCCceecChHHHHHHHhcccc
Q 003793 402 YGCTTCIGNSGDLDESVATAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTV 467 (795)
Q Consensus 402 ~gCg~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~vaA~AlaG~I 467 (795)
||||+|+|+++.+. + ++ ++|||+||||+||||+..+.+|||||+|||||||+|+|
T Consensus 326 pgCg~C~G~~~~~~-~-------ge---~~vsT~NRNF~GRmG~~~~~~yLaSP~~vaAsAi~G~i 380 (380)
T cd01585 326 SACGPCIGMGQAPP-T-------GG---VSVRTFNRNFEGRSGTKDDLVYLASPEVAAAAALTGVI 380 (380)
T ss_pred CCceeccCCCCCCC-C-------Cc---EEEEccCCCCCccCCCCCCcEEeCCHHHHHHHHhCccC
Confidence 99999999976532 2 44 37899999999999998888999999999999999987
No 23
>COG0065 LeuC 3-isopropylmalate dehydratase large subunit [Amino acid transport and metabolism]
Probab=100.00 E-value=1.7e-110 Score=896.84 Aligned_cols=372 Identities=29% Similarity=0.478 Sum_probs=332.5
Q ss_pred HHHHhcCCCCCccCCCCceEEEccCCcccCCCCchhHHHHhHHHHHHHhhhhhhhhhhhccccCcceeeCCC-Cceeccc
Q 003793 3 DAMKNLNSDPKKINPLVPVDLVVDHSVQVDVARSENAVQANMEFEFQRNQERFAFLKWGSSAFHNMLVVPPG-SGIVHQV 81 (795)
Q Consensus 3 ~~~~~~g~~~~~~~P~~pv~lv~DH~v~~~~~~~~~a~~~n~~~e~~rn~e~~~fl~~~~~~~~~~~~~~pg-~GI~Hqv 81 (795)
+.|+++|. ++++|.+ +.+++||++|+++.. .+ ++.+++.+|+++| ++ +.|++.| +||||||
T Consensus 44 ~~lr~~g~--kV~~p~k-~~~~~DH~vPt~~~~--~a---~~~~~lr~~~ke~-----Gi-----~~~~~~g~~GI~H~v 105 (423)
T COG0065 44 EGLREAGR--KVRDPEK-TVATFDHNVPTPDIK--AA---EQQKELRENAKEF-----GI-----VNFYDVGDQGIVHQV 105 (423)
T ss_pred HHHHHhCC--cccCccc-eEEEecCCCCCccHH--HH---HHHHHHHHHHHHh-----CC-----eeeecCCCCcEEEEE
Confidence 46788887 6899997 999999999998653 33 3444445554433 22 3456778 9999999
Q ss_pred ccccccceeecCCCcccc-CeEEecCCCCCccCccccccccccHHHHHHHHccCceeeeCCcEEEEEEeccCCCCCChhh
Q 003793 82 NLEYLGRVVFNTDGILYP-DSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLTGKLRDGVTATD 160 (795)
Q Consensus 82 ~~E~~a~~v~~~~G~~~P-~~ivGtDSHT~~~GalG~la~GvGg~e~~~~m~g~~~~~~vPevv~V~l~G~l~~gVtakD 160 (795)
.+| +|++.| ++|||+||||||+||||+||+|+|+||++.+|++|++|+++||+++|+++|+|++||||||
T Consensus 106 ~pE---------~G~~~PG~~Iv~gDSHT~T~GAfGAfA~GiGttdva~vlatg~lw~~vpktm~v~v~G~l~~gV~aKD 176 (423)
T COG0065 106 GPE---------QGLTLPGMTIVGGDSHTCTHGAFGAFAFGIGTTDVAHVLATGKLWFRVPKTMKVEVEGKLPPGVTAKD 176 (423)
T ss_pred ecc---------ccccCCCcEEEecccCcccchhhhhhhccccHHHHHHHHHhCceeeeccceEEEEEecccCCCccHHH
Confidence 999 999999 5899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCccceEEEEecCcCCCCCcccchhhcccccccCceeeeeeCChHHHHHHHhcCCChhhHHHHHHHHHH
Q 003793 161 LVLTVTQMLRKHGVVGKFVEFYGEGMGQLPLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVSMIEEYLRA 240 (795)
Q Consensus 161 viL~i~~~l~~~G~~g~~vEf~G~gv~~Ls~~~R~TI~NMa~E~GA~~~~fp~D~~t~~yL~~~gr~~~~~~~~~~y~~~ 240 (795)
|||+||++++.+|++|+++||+|+.+++|||++|||||||++|+||++|+|+||++|++||+... ++
T Consensus 177 iiL~iIg~iG~~g~t~~aiEf~Ge~i~~lsme~RmTicNMaIE~GAkaGii~pDe~T~~Y~k~~~-------------~a 243 (423)
T COG0065 177 IILALIGKIGVDGGTGYAIEFAGEAIRSLSMEGRMTLCNMAIEAGAKAGIIAPDETTFEYLKEWD-------------GA 243 (423)
T ss_pred HHHHHHHHhccCCcceEEEEEeccchhhCChhhhhhhhhhhhhhcccceeeCCcHhHHHHHHHHh-------------cc
Confidence 99999999999999999999999999999999999999999999999999999999999999422 12
Q ss_pred hhhcccCCCCCCCCccceEEEEECCCccceeecCCCCCCccccCCcchhhHHhhhccccccCCCCCccccccccccccCC
Q 003793 241 NKMFVDYNEPEQERSYSSYLQLDLADVEPCISGPKRPHDRVPLKDMKADWHACLENQVGFKGFAVPKQEQDKVAKFSFHG 320 (795)
Q Consensus 241 ~~l~~~~~~~D~~a~Y~~vieiDLs~leP~VA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g 320 (795)
...|+.. .+|+||.|+++++||+|+|+|+||||++|+|++||+++.++ +
T Consensus 244 ~~~~~~l-~sD~dA~y~~~v~~d~s~leP~Va~p~~p~nv~~v~e~~~~--------------~---------------- 292 (423)
T COG0065 244 VAYWKTL-KSDEDAVYDKVVELDASDLEPQVAWPTNPDNVVPVSEVEPD--------------P---------------- 292 (423)
T ss_pred cccccee-cCCCCCceeEEEEEEcccCCceeeCCCCcccceecccccCC--------------c----------------
Confidence 2234332 68999999999999999999999999999999999998631 1
Q ss_pred CcccccCccEEEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCccCCceeEEEecCcHHHHHHHHHcCcHHHHHhcCcEEe
Q 003793 321 QPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLEVKPWVKTSLAPGSGVVTKYLQQSGLQKYLNQQGFHIV 400 (795)
Q Consensus 321 ~~~~l~~g~V~~a~IGSCTN~~~~dl~~aA~lLa~~a~~~G~kv~~~V~~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~i~ 400 (795)
-.|+|+|||||||||++||++||++| +|+||+++||++|+|||+.|+++++++||+++|.+|||.|.
T Consensus 293 -------i~iDqVFIGSCTNgRieDLr~AA~Il------kgrkva~~Vr~iVvP~S~~V~~qA~~eGl~~if~~AG~~~~ 359 (423)
T COG0065 293 -------IKIDQVFIGSCTNGRIEDLRAAAEIL------KGRKVAPGVRAIVVPGSRRVKEQAEKEGLDKIFIEAGFEWR 359 (423)
T ss_pred -------eeeceEEEeccCCccHHHHHHHHHHh------ccCccCCCceEEEecCcHHHHHHHHHccHHHHHHhcCcEEc
Confidence 13679999999999999999999999 89999999999999999999999999999999999999999
Q ss_pred ccCCccccCCCCCCChhhhhhcccCceeEEEEeccCCCCCCCCCCccCCceecChHHHHHHHhccccc
Q 003793 401 GYGCTTCIGNSGDLDESVATAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVD 468 (795)
Q Consensus 401 ~~gCg~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~vaA~AlaG~I~ 468 (795)
.||||||+|++.++.+++| + |+|||||||+||||+..+.+||+||+++||+|++|+|+
T Consensus 360 ~pgCg~CLg~~~gvL~~gE-------~---c~STSNRNF~GRqG~~~a~~~L~SPA~AAAaAv~G~i~ 417 (423)
T COG0065 360 EPGCGPCLGMHPGVLGPGE-------R---CASTSNRNFEGRQGSPGARTYLASPAMAAAAAVEGEIV 417 (423)
T ss_pred CCCCccccccCCCcCCCCC-------E---EeeccCCCCCccCCCCCCeEEecCHHHHHHHHhhCEec
Confidence 9999999999966555544 3 67999999999999777889999999999999999996
No 24
>TIGR01343 hacA_fam homoaconitate hydratase family protein. This model represents a subfamily of proteins consisting of aconitase, homoaconitase, 3-isopropylmalate dehydratase, and uncharacterized proteins. The majority of the members of this family have been designated as 3-isopropylmalate dehydratase large subunit (LeuC) in microbial genome annotation, but the only characterized member is Thermus thermophilus homoaconitase, an enzyme of a non-aspartate pathway of Lys biosynthesis.
Probab=100.00 E-value=3.9e-110 Score=920.46 Aligned_cols=368 Identities=29% Similarity=0.459 Sum_probs=336.0
Q ss_pred HHHHhcCCCCCccCCCCceEEEccCCcccCCCCchhHHHHhHHHHHHHhhhhhhhhhhhccccCcce-eeCCCCceeccc
Q 003793 3 DAMKNLNSDPKKINPLVPVDLVVDHSVQVDVARSENAVQANMEFEFQRNQERFAFLKWGSSAFHNML-VVPPGSGIVHQV 81 (795)
Q Consensus 3 ~~~~~~g~~~~~~~P~~pv~lv~DH~v~~~~~~~~~a~~~n~~~e~~rn~e~~~fl~~~~~~~~~~~-~~~pg~GI~Hqv 81 (795)
+.|+++|.+ ++++|.+ +.+++||++|+... ..+..++.+++|+|+. +|. |+++|+|||||+
T Consensus 40 ~~~~~~g~~-~v~~P~~-v~~~~DH~~p~~~~--~~a~~~~~~r~fa~~~--------------gi~~~~~~g~GI~H~v 101 (412)
T TIGR01343 40 RRLEEYGID-KVFDPER-IVIVVDHVVPASTI--KAAEMQKLAREFVKKT--------------GIKHFFDVGEGICHQV 101 (412)
T ss_pred HHHHHcCCC-cCCCCCc-EEEEcCCCCCCCCh--hHHHHHHHHHHHHHHc--------------CCceeecCCCCEEEEE
Confidence 567788875 6899997 99999999998765 3455777888888742 353 689999999999
Q ss_pred ccccccceeecCCCcccc-CeEEecCCCCCccCccccccccccHHHHHHHHccCceeeeCCcEEEEEEeccCCCCCChhh
Q 003793 82 NLEYLGRVVFNTDGILYP-DSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLTGKLRDGVTATD 160 (795)
Q Consensus 82 ~~E~~a~~v~~~~G~~~P-~~ivGtDSHT~~~GalG~la~GvGg~e~~~~m~g~~~~~~vPevv~V~l~G~l~~gVtakD 160 (795)
++| +|++.| ++++||||||||+||||+||||||++|++.+|++|++||++||+|+|+|+|+|++||++||
T Consensus 102 ~~E---------~g~~~PG~~iig~DSHT~t~GalGa~a~GvG~td~a~~~atg~~w~~vPe~i~v~l~G~l~~gV~akD 172 (412)
T TIGR01343 102 LPE---------EGLVKPGDLVVGADSHTCTYGALGAFATGMGSTDIAYAIATGKTWFRVPESMKVTLTGKLNPGVTAKD 172 (412)
T ss_pred chh---------hCcCCCCcEEEecCCCcCCcCchhheeecccHHHHHHHHhcCcEeecCCcEEEEEEEcccCCCcCHHH
Confidence 999 889999 6899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCccceEEEEecCcCCCCCcccchhhcccccccCceeeeeeCChHHHHHHHhcCCChhhHHHHHHHHHH
Q 003793 161 LVLTVTQMLRKHGVVGKFVEFYGEGMGQLPLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVSMIEEYLRA 240 (795)
Q Consensus 161 viL~i~~~l~~~G~~g~~vEf~G~gv~~Ls~~~R~TI~NMa~E~GA~~~~fp~D~~t~~yL~~~gr~~~~~~~~~~y~~~ 240 (795)
|||+|+++|+.+|++||+|||+|||+++||+++|||||||++|+||+++|||+|++|++||+.++|.+. +
T Consensus 173 viL~li~~~g~~g~~~~~vEf~G~~i~~Ls~~~R~ti~NMa~E~GA~~~i~~~De~t~~yl~~~~~~~~--~-------- 242 (412)
T TIGR01343 173 VILEVIGQIGVDGATYMAMEFHGETIKNMTMEERMTLANMAIEAGGKTGIIEPDEKTRAYLKERYKEPF--R-------- 242 (412)
T ss_pred HHHHHHHHhCcCCcceEEEEEECCcccccCHHHHhhhhccccccCceeeEecCcHHHHHHHHhhCcccc--c--------
Confidence 999999999999999999999999999999999999999999999999999999999999999876421 1
Q ss_pred hhhcccCCCCCCCCccceEEEEECCCccceeecCCCCCCccccCCcchhhHHhhhccccccCCCCCccccccccccccCC
Q 003793 241 NKMFVDYNEPEQERSYSSYLQLDLADVEPCISGPKRPHDRVPLKDMKADWHACLENQVGFKGFAVPKQEQDKVAKFSFHG 320 (795)
Q Consensus 241 ~~l~~~~~~~D~~a~Y~~vieiDLs~leP~VA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g 320 (795)
.+ .+|++|.|+++++||||+|||+||+|++|+|++||+++.. .
T Consensus 243 --~~----~~D~da~Y~~~i~iDls~leP~va~P~~Pdnv~~v~~~~g--------------~----------------- 285 (412)
T TIGR01343 243 --VY----KSDEDAEYAKEVEIDASQLEPVVAAPHNVDNVHPVSEVEG--------------I----------------- 285 (412)
T ss_pred --cc----CCCCCCCEEEEEEEEcccceeeEecCCCCCcEEEhHHhCC--------------C-----------------
Confidence 11 5899999999999999999999999999999999999752 1
Q ss_pred CcccccCccEEEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCccCCceeEEEecCcHHHHHHHHHcCcHHHHHhcCcEEe
Q 003793 321 QPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLEVKPWVKTSLAPGSGVVTKYLQQSGLQKYLNQQGFHIV 400 (795)
Q Consensus 321 ~~~~l~~g~V~~a~IGSCTN~~~~dl~~aA~lLa~~a~~~G~kv~~~V~~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~i~ 400 (795)
.|+|||||||||||++||++||++| +|+||+|+||++|+|||++|+++|+++|++++|.++||+|.
T Consensus 286 --------~id~~~IGSCTngr~~Dl~~aA~il------~G~kv~~~v~~~v~P~S~~V~~~~~~~G~~~~l~~aG~~i~ 351 (412)
T TIGR01343 286 --------EVDQVFIGSCTNGRIEDLRVAAKIL------KGRKVAPDVRLIVIPASRAVYLQALKEGLIEIFVKAGAVVS 351 (412)
T ss_pred --------eeeEEEEecCCCCChHHHHHHHHHH------cCCCCCCCCCEEEeCCCHHHHHHHHHcCcHHHHHHcCCEEc
Confidence 3679999999999999999999999 89999999999999999999999999999999999999999
Q ss_pred ccCCccccCCCCCCChhhhhhcccCceeEEEEeccCCCCCCCCCCccCCceecChHHHHHHHhccccc
Q 003793 401 GYGCTTCIGNSGDLDESVATAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVD 468 (795)
Q Consensus 401 ~~gCg~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~vaA~AlaG~I~ 468 (795)
+||||+|+|++..+.++ |++ +|||+||||+||||+..+.+|||||++||||||+|+|+
T Consensus 352 ~pgCg~C~G~~~g~l~~-------ge~---~vsT~NRNF~GR~G~~~~~~yLaSP~~vaAsAi~G~it 409 (412)
T TIGR01343 352 TPGCGPCLGRHQGVLAP-------GEV---CISTSNRNFKGRMGDPNAEIYLASPATAAASAVKGRIA 409 (412)
T ss_pred CCccccccCcCCCcCCC-------CCE---EEEecCCCCCCCCCCCCCcEEECCHHHHHHHHhCcccC
Confidence 99999999997443333 343 78999999999999988889999999999999999996
No 25
>TIGR02086 IPMI_arch 3-isopropylmalate dehydratase, large subunit. This subfamily is a subset of the larger HacA family (Homoaconitate hydratase family, TIGR01343) and is most closely related to the 3-isopropylmalate dehydratase, large subunits which form TIGR00170. This subfamily includes the members of TIGR01343 which are gene clustered with other genes of leucine biosynthesis. The rest of the subfamily includes mainly archaeal species which exhibit two hits to this model. In these cases it is possible that one or the other of the hits does not have a 3-isopropylmalate dehydratase activity but rather one of the other related aconitase-like activities.
Probab=100.00 E-value=1.8e-109 Score=915.15 Aligned_cols=367 Identities=28% Similarity=0.442 Sum_probs=335.9
Q ss_pred HHHHhcCCCCCccCCCCceEEEccCCcccCCCCchhHHHHhHHHHHHHhhhhhhhhhhhccccCcceeeCCCCceecccc
Q 003793 3 DAMKNLNSDPKKINPLVPVDLVVDHSVQVDVARSENAVQANMEFEFQRNQERFAFLKWGSSAFHNMLVVPPGSGIVHQVN 82 (795)
Q Consensus 3 ~~~~~~g~~~~~~~P~~pv~lv~DH~v~~~~~~~~~a~~~n~~~e~~rn~e~~~fl~~~~~~~~~~~~~~pg~GI~Hqv~ 82 (795)
+.|+++| .++++|.+ +.+++||++|+... ..+..++.+++|.|.. +|++++||+|||||++
T Consensus 41 ~~~~~~g--~~v~~p~~-~~~~~DH~~p~~~~--~~a~~~~~~r~fa~~~--------------gi~~~~~g~GI~H~v~ 101 (412)
T TIGR02086 41 ETLRELG--ARVEDPEK-IVIFFDHVVPPPTV--EAANRQKEIREFAKEH--------------GIPVFDVGEGICHQVL 101 (412)
T ss_pred HHHHHcC--CcccCCCC-EEEECCCCCCCCCH--HHHHHHHHHHHHHHHc--------------CCcEECCCCCeEeEEh
Confidence 5677888 56899997 99999999999865 3444566677776642 4677899999999999
Q ss_pred cccccceeecCCCcccc-CeEEecCCCCCccCccccccccccHHHHHHHHccCceeeeCCcEEEEEEeccCCCCCChhhH
Q 003793 83 LEYLGRVVFNTDGILYP-DSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLTGKLRDGVTATDL 161 (795)
Q Consensus 83 ~E~~a~~v~~~~G~~~P-~~ivGtDSHT~~~GalG~la~GvGg~e~~~~m~g~~~~~~vPevv~V~l~G~l~~gVtakDv 161 (795)
+| .|+++| +++||+||||||+||||+||||||++|++.+|++|++|+++||+|+|+|+|+|++||++|||
T Consensus 102 ~E---------~G~~~PG~~iig~DSHT~t~GalGa~a~GvG~td~a~~latg~~~~~vPeti~v~l~G~l~~gV~aKDv 172 (412)
T TIGR02086 102 VE---------EGYAGPGMVVVGGDSHTCTSGAVGAFATGMGATDVAIALATGKTWLKVPESIKVVVEGKPEEGVTAKDV 172 (412)
T ss_pred hh---------cCccCCCcEEEecCCCccccchhhheeecccHHHHHHHHhcCCchhcCCCEEEEEEEccCCCCcCHHHH
Confidence 99 889999 58999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCccceEEEEecCcCCCCCcccchhhcccccccCceeeeeeCChHHHHHHHhcCCChhhHHHHHHHHHHh
Q 003793 162 VLTVTQMLRKHGVVGKFVEFYGEGMGQLPLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVSMIEEYLRAN 241 (795)
Q Consensus 162 iL~i~~~l~~~G~~g~~vEf~G~gv~~Ls~~~R~TI~NMa~E~GA~~~~fp~D~~t~~yL~~~gr~~~~~~~~~~y~~~~ 241 (795)
||+|++.|+.+|++||+|||+|+|+++||+++|||||||++|+||+++|||+|++|++||+.++|.+.
T Consensus 173 iL~li~~lg~~g~~~~~vEf~G~~v~~Ls~~~R~Ti~NMa~E~GA~~~i~~~D~~t~~yl~~~~~~~~------------ 240 (412)
T TIGR02086 173 ALHIVGELGADGATYMAIEFFGLPIEAMSMDERMTLCNMAVEAGAKAGIVVPDEETYEYLKKRRGYEF------------ 240 (412)
T ss_pred HHHHHHHhCcCccceeEEEEECccccccCHHHHhhhhhcccccCceeeEecCCHHHHHHHHhcCCccc------------
Confidence 99999999999999999999999999999999999999999999999999999999999999987531
Q ss_pred hhcccCCCCCCCCccceEEEEECCCccceeecCCCCCCccccCCcchhhHHhhhccccccCCCCCccccccccccccCCC
Q 003793 242 KMFVDYNEPEQERSYSSYLQLDLADVEPCISGPKRPHDRVPLKDMKADWHACLENQVGFKGFAVPKQEQDKVAKFSFHGQ 321 (795)
Q Consensus 242 ~l~~~~~~~D~~a~Y~~vieiDLs~leP~VA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~ 321 (795)
..+ .+|++|.|+++++||||+|||+||+|++|+|++|+++++. .
T Consensus 241 ~~~----~~D~~a~Y~~~i~iDls~leP~va~P~~P~nv~~v~~~~~--------------~------------------ 284 (412)
T TIGR02086 241 RIL----RPDPGAKYDDEIEIDLSDLEPLVAVPHSVDNVRPVSDVEG--------------T------------------ 284 (412)
T ss_pred ccc----cCCCCCCEEEEEEEEccceeEEecCCCChHhcccchhhcc--------------c------------------
Confidence 122 5899999999999999999999999999999999999862 1
Q ss_pred cccccCccEEEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCccCCceeEEEecCcHHHHHHHHHcCcHHHHHhcCcEEec
Q 003793 322 PAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLEVKPWVKTSLAPGSGVVTKYLQQSGLQKYLNQQGFHIVG 401 (795)
Q Consensus 322 ~~~l~~g~V~~a~IGSCTN~~~~dl~~aA~lLa~~a~~~G~kv~~~V~~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~i~~ 401 (795)
.|++||||||||||++||++||++| ||+||+|+||++|+|||++|+++|+++|++++|.++||.|.+
T Consensus 285 -------~id~~~IGSCTngr~~Dl~~aA~vL------kG~kv~~~v~~~v~P~S~~v~~~~~~~G~~~~~~~aGa~i~~ 351 (412)
T TIGR02086 285 -------EIDQVFIGSCTNGRIEDLRIAAEIL------EGRRVHPDVRLIVVPASRKVYERALEEGIILTLIRAGAIICP 351 (412)
T ss_pred -------ceeEEEEeccCCCChHHHHHHHHHH------cCCCCCCCcCEEEeCCCHHHHHHHHHcCcHHHHHHcCCEEcC
Confidence 3679999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred cCCccccCCCCCCChhhhhhcccCceeEEEEeccCCCCCCCCCCccCCceecChHHHHHHHhccccc
Q 003793 402 YGCTTCIGNSGDLDESVATAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVD 468 (795)
Q Consensus 402 ~gCg~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~vaA~AlaG~I~ 468 (795)
||||+|+|++..+..+ |++ +|||+||||+||||+..+.+|||||++||||||+|+|+
T Consensus 352 pgCg~C~G~~~g~~~~-------ge~---~vsT~NRNF~GR~G~~~~~~yLaSP~~aAAsAi~G~it 408 (412)
T TIGR02086 352 PGCGPCLGRHMGVLGD-------GEV---CVSTTNRNFRGRMGSPDAEIYLASPATAAASAVEGYIT 408 (412)
T ss_pred CccccccCcCCCcCCC-------CCE---EEEecCCCCCcCCCCCCCcEEECCHHHHHHHHhCCccC
Confidence 9999999998554333 443 68999999999999988889999999999999999996
No 26
>PRK00402 3-isopropylmalate dehydratase large subunit; Reviewed
Probab=100.00 E-value=3.2e-109 Score=914.57 Aligned_cols=368 Identities=30% Similarity=0.476 Sum_probs=334.3
Q ss_pred HHHHhcCCCCCccCCCCceEEEccCCcccCCCCchhHHHHhHHHHHHHhhhhhhhhhhhccccCcce-eeCCCCceeccc
Q 003793 3 DAMKNLNSDPKKINPLVPVDLVVDHSVQVDVARSENAVQANMEFEFQRNQERFAFLKWGSSAFHNML-VVPPGSGIVHQV 81 (795)
Q Consensus 3 ~~~~~~g~~~~~~~P~~pv~lv~DH~v~~~~~~~~~a~~~n~~~e~~rn~e~~~fl~~~~~~~~~~~-~~~pg~GI~Hqv 81 (795)
+.|+++|.+ ++++|.+ +.+++||++|+... ..+..++..++|.|+. +|+ |+++|+|||||+
T Consensus 43 ~~~~~~g~~-~v~~P~~-~~~~~DH~~p~~~~--~~a~~~~~~r~fa~~~--------------gi~~~~~~g~GI~H~v 104 (418)
T PRK00402 43 KEFEKIGGD-KVFDPSK-IVIVFDHFVPAKDI--KSAEQQKILREFAKEQ--------------GIPNFFDVGEGICHQV 104 (418)
T ss_pred HHHHHcCCC-ccCCCCc-EEEECCCCCCCCCh--hhHHHHHHHHHHHHHc--------------CCcceeCCCCCEeeEe
Confidence 456777775 5899997 99999999999864 3455777788887742 354 678999999999
Q ss_pred ccccccceeecCCCcccc-CeEEecCCCCCccCccccccccccHHHHHHHHccCceeeeCCcEEEEEEeccCCCCCChhh
Q 003793 82 NLEYLGRVVFNTDGILYP-DSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLTGKLRDGVTATD 160 (795)
Q Consensus 82 ~~E~~a~~v~~~~G~~~P-~~ivGtDSHT~~~GalG~la~GvGg~e~~~~m~g~~~~~~vPevv~V~l~G~l~~gVtakD 160 (795)
++| +|+++| +++|||||||||+||||+||||||++|++.+|++|++||++||+|+|+|+|+|++||++||
T Consensus 105 ~~E---------~g~~~PG~~ivg~DSHT~t~GalG~~a~GvG~td~~~~l~tg~~~~~vPe~v~V~l~G~l~~gV~akD 175 (418)
T PRK00402 105 LPE---------KGLVRPGDVVVGADSHTCTYGALGAFATGMGSTDMAAAMATGKTWFKVPETIKVVLEGKLPPGVTAKD 175 (418)
T ss_pred hhh---------cCccCCCcEEEeCCCCccccCccceEEecccHHHHHHHHhcCcEEEcCCCEEEEEEEeecCCCcCHHH
Confidence 999 788899 6899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCccceEEEEecCcCCCCCcccchhhcccccccCceeeeeeCChHHHHHHHhcCCChhhHHHHHHHHHH
Q 003793 161 LVLTVTQMLRKHGVVGKFVEFYGEGMGQLPLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVSMIEEYLRA 240 (795)
Q Consensus 161 viL~i~~~l~~~G~~g~~vEf~G~gv~~Ls~~~R~TI~NMa~E~GA~~~~fp~D~~t~~yL~~~gr~~~~~~~~~~y~~~ 240 (795)
|||+|+++|+.+|++||+|||+|||+++||+++|||||||++|+||+++|||+|++|++||+.+++.. +
T Consensus 176 viL~li~~l~~~g~~~~~vEf~G~~i~~Ls~~~R~Ti~NM~~E~GA~~~i~~~D~~t~~yl~~~~~~~-~---------- 244 (418)
T PRK00402 176 VILHIIGDIGVDGATYKALEFTGETIEALSMDERMTLANMAIEAGAKAGIFAPDEKTLEYLKERAGRD-Y---------- 244 (418)
T ss_pred HHHHHHHHhCcCccceEEEEEECCccccCCHHHHhhhhhcccccCceeeEecCChHHHHHHHhhcccc-c----------
Confidence 99999999999999999999999999999999999999999999999999999999999999975322 1
Q ss_pred hhhcccCCCCCCCCccceEEEEECCCccceeecCCCCCCccccCCcchhhHHhhhccccccCCCCCccccccccccccCC
Q 003793 241 NKMFVDYNEPEQERSYSSYLQLDLADVEPCISGPKRPHDRVPLKDMKADWHACLENQVGFKGFAVPKQEQDKVAKFSFHG 320 (795)
Q Consensus 241 ~~l~~~~~~~D~~a~Y~~vieiDLs~leP~VA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g 320 (795)
.| ..+|++|.|+++++||||+|||+||+|++|||++||+++++
T Consensus 245 --~~---l~~D~~a~Y~~~i~iDls~leP~va~P~~Pdnv~~v~~~~g-------------------------------- 287 (418)
T PRK00402 245 --KP---WKSDEDAEYEEVYEIDLSKLEPQVAAPHLPDNVKPVSEVEG-------------------------------- 287 (418)
T ss_pred --cc---ccCCCCCCEEEEEEEEcccceeeeecCCCccceeEchhhCC--------------------------------
Confidence 11 14799999999999999999999999999999999999762
Q ss_pred CcccccCccEEEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCccCCceeEEEecCcHHHHHHHHHcCcHHHHHhcCcEEe
Q 003793 321 QPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLEVKPWVKTSLAPGSGVVTKYLQQSGLQKYLNQQGFHIV 400 (795)
Q Consensus 321 ~~~~l~~g~V~~a~IGSCTN~~~~dl~~aA~lLa~~a~~~G~kv~~~V~~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~i~ 400 (795)
-.|+|||||||||||+|||++||++| +|+||+|+||++|+|||++|+++|+++|++++|+++||+|.
T Consensus 288 -------~~id~~~IGSCTngr~eDl~~aA~il------~G~kv~~~V~~~v~PgS~~V~~~~~~~G~~~~l~~aGa~i~ 354 (418)
T PRK00402 288 -------TKVDQVFIGSCTNGRLEDLRIAAEIL------KGRKVAPGVRLIVIPASQKIYLQALKEGLIEIFVDAGAVVS 354 (418)
T ss_pred -------ceeeEEEEecCCCCChHHHHHHHHHH------cCCCCCCCccEEEeCCCHHHHHHHHHcCcHHHHHHcCCEEc
Confidence 13679999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred ccCCccccCCCCCCChhhhhhcccCceeEEEEeccCCCCCCCCCCccCCceecChHHHHHHHhccccc
Q 003793 401 GYGCTTCIGNSGDLDESVATAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVD 468 (795)
Q Consensus 401 ~~gCg~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~vaA~AlaG~I~ 468 (795)
+||||+|+|++....++ |++ +|||+||||+||||+..+.+|||||++||||||+|+|+
T Consensus 355 ~pgCg~C~G~~~g~~~~-------ge~---~vsT~NRNF~GR~G~~~~~~yLaSP~~vaAsAl~G~it 412 (418)
T PRK00402 355 TPTCGPCLGGHMGVLAP-------GEV---CLSTTNRNFKGRMGSPESEVYLASPAVAAASAVTGKIT 412 (418)
T ss_pred CCccccccCcCCCcCCC-------CCE---EEEecCCCCCCCCCCCCCeEEECCHHHHHHHHhCCeeC
Confidence 99999999987543333 343 78999999999999888889999999999999999996
No 27
>TIGR02083 LEU2 3-isopropylmalate dehydratase, large subunit. This model along with TIGR00170 describe clades which consist only of LeuC sequences. Here, the genes from Pyrococcus furiosus, Clostridium acetobutylicum, Thermotoga maritima and others are gene clustered with related genes from the leucine biosynthesis pathway.
Probab=100.00 E-value=7.1e-109 Score=909.80 Aligned_cols=371 Identities=32% Similarity=0.497 Sum_probs=334.3
Q ss_pred HHHHhcCCCCCccCCCCceEEEccCCcccCCCCchhHHHHhHHHHHHHhhhhhhhhhhhccccCcceeeCCCC-ceeccc
Q 003793 3 DAMKNLNSDPKKINPLVPVDLVVDHSVQVDVARSENAVQANMEFEFQRNQERFAFLKWGSSAFHNMLVVPPGS-GIVHQV 81 (795)
Q Consensus 3 ~~~~~~g~~~~~~~P~~pv~lv~DH~v~~~~~~~~~a~~~n~~~e~~rn~e~~~fl~~~~~~~~~~~~~~pg~-GI~Hqv 81 (795)
+.|+++|.. +++||.+ |.+++||++|+... ..+..++.+++|.|++ ++++ |+++|+ |||||+
T Consensus 42 ~~f~~~g~~-~V~dp~~-v~~~~DH~vpa~~~--~~a~~~~~~r~fa~~~--------gi~~-----f~d~g~~GI~H~v 104 (419)
T TIGR02083 42 KAFKEYGGK-KVFDPDR-VALVPDHFTPNKDI--KSAEQCKMMREFAREQ--------GIEK-----FFEIGNMGIEHAL 104 (419)
T ss_pred HHHHHcCCC-cCCCCCC-EEEEeCCCCCCCCH--HHHHHHHHHHHHHHHc--------CCcc-----eecCCCcceeeee
Confidence 567788874 6899997 99999999999854 4566788888888852 3333 467785 999999
Q ss_pred ccccccceeecCCCcccc-CeEEecCCCCCccCccccccccccHHHHHHHHccCceeeeCCcEEEEEEeccCCCCCChhh
Q 003793 82 NLEYLGRVVFNTDGILYP-DSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLTGKLRDGVTATD 160 (795)
Q Consensus 82 ~~E~~a~~v~~~~G~~~P-~~ivGtDSHT~~~GalG~la~GvGg~e~~~~m~g~~~~~~vPevv~V~l~G~l~~gVtakD 160 (795)
++| +|+++| +++||+||||||+||||+||||||++|++.+|++|++||+|||+|+|+|+|+|++||++||
T Consensus 105 ~~E---------~g~~~PG~~ivg~DSHT~t~Ga~Ga~a~GvG~td~a~~latg~~w~~vPetv~v~l~G~l~~gV~aKD 175 (419)
T TIGR02083 105 LPE---------EGIVKPGDLIIGADSHTCTYGALGAFATGVGSTDMAVGMATGKAWFRVPEAIKFVLKGKLKPWVTGKD 175 (419)
T ss_pred ccc---------cCccCCCeEEEecCCCccccCccceeEEccChHHHHHHHhcCCeeecCCCEEEEEEEeecCCCcCHHH
Confidence 999 899999 5899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCccceEEEEecCcCCCCCcccchhhcccccccCceeeeeeCChHHHHHHHhcCCChhhHHHHHHHHHH
Q 003793 161 LVLTVTQMLRKHGVVGKFVEFYGEGMGQLPLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVSMIEEYLRA 240 (795)
Q Consensus 161 viL~i~~~l~~~G~~g~~vEf~G~gv~~Ls~~~R~TI~NMa~E~GA~~~~fp~D~~t~~yL~~~gr~~~~~~~~~~y~~~ 240 (795)
|||+|+++|+.+|++||+|||+|||+++||+++|||||||++|+||+++|||+|++|++||+.+++.+ .+
T Consensus 176 viL~l~~~lg~~G~~~~~iEf~G~~v~~ls~~~R~Tl~NMa~E~GA~~~i~~~D~~t~~yL~~r~~~~--~~-------- 245 (419)
T TIGR02083 176 LILHIIGIIGVDGALYKSMEFSGEGLKELSMDDRFTIANMAIEAGAKTGIFPVDEITIEYEKGRGKRE--EK-------- 245 (419)
T ss_pred HHHHHHHHhCcCCccceEEEEECCccccCCHHHHhhhhhcccccCceeeEecCChHHHHHHhhCCccc--hh--------
Confidence 99999999999999999999999999999999999999999999999999999999999999765332 11
Q ss_pred hhhcccCCCCCCCCccceEEEEECCCccceeecCCCCCCccccCCcchhhHHhhhccccccCCCCCccccccccccccCC
Q 003793 241 NKMFVDYNEPEQERSYSSYLQLDLADVEPCISGPKRPHDRVPLKDMKADWHACLENQVGFKGFAVPKQEQDKVAKFSFHG 320 (795)
Q Consensus 241 ~~l~~~~~~~D~~a~Y~~vieiDLs~leP~VA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g 320 (795)
.+ .+|++|.|+++++||||+|||+||+|++|+|++||+|++. .+
T Consensus 246 --~~----~~D~dA~Y~~~~~iDls~leP~va~P~~pdnv~~v~e~~~------------~g------------------ 289 (419)
T TIGR02083 246 --IY----KADEDAKYVRVIEIDLSELEPQVAFPHLPENTKDISEAGK------------EE------------------ 289 (419)
T ss_pred --cc----cCCCCCCEEEEEEEEccccceeecCCCCcccCcChhhccc------------cc------------------
Confidence 12 5899999999999999999999999999999999999851 01
Q ss_pred CcccccCccEEEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCccCCceeEEEecCcHHHHHHHHHcCcHHHHHhcCcEEe
Q 003793 321 QPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLEVKPWVKTSLAPGSGVVTKYLQQSGLQKYLNQQGFHIV 400 (795)
Q Consensus 321 ~~~~l~~g~V~~a~IGSCTN~~~~dl~~aA~lLa~~a~~~G~kv~~~V~~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~i~ 400 (795)
-+|+|||||||||||++||++||++| +|+||+++||++|+|||++|+++|+++|++++|.++||.|.
T Consensus 290 -------~~id~v~IGSCTngr~eDl~~AA~iL------kG~kv~~~vr~~v~P~S~~v~~~a~~~G~~~~l~~aGa~i~ 356 (419)
T TIGR02083 290 -------IKIDQVVIGSCTNGRLEDLRLAAEIL------KGKTVAPDVRCIIIPGSQNVYLEAMKEGLLEIFIEAGAVVS 356 (419)
T ss_pred -------CccCeEEEEcCCCCChHHHHHHHHHH------cCCCCCCCccEEEeCCCHHHHHHHHHCCcHHHHHHcCCEEc
Confidence 13679999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred ccCCccccCCCCCCChhhhhhcccCceeEEEEeccCCCCCCCCCCccCCceecChHHHHHHHhccccc
Q 003793 401 GYGCTTCIGNSGDLDESVATAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVD 468 (795)
Q Consensus 401 ~~gCg~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~vaA~AlaG~I~ 468 (795)
+||||+|+|++..+.++ +++ +|||+||||+||||+..+.+|||||++||||||+|+|+
T Consensus 357 ~pgCg~C~G~~~g~l~~-------ge~---~vsT~NRNF~GRmG~~~~~~yLaSP~~vAAsAi~G~it 414 (419)
T TIGR02083 357 TPTCGPCLGGHMGILAE-------GER---AISTTNRNFVGRMGHPKSEVYLASPAVAAASAIKGYIA 414 (419)
T ss_pred CCccccccCcCCCcCCC-------CCE---EEEecCCCCCccCCCCCCeEEECCHHHHHHHHhCCCcC
Confidence 99999999988443333 343 78999999999999777789999999999999999996
No 28
>cd01582 Homoaconitase Homoaconitase and other uncharacterized proteins of the Aconitase family. Homoaconitase catalytic domain. Homoaconitase and other uncharacterized proteins of the Aconitase family. Homoaconitase is part of an unusual lysine biosynthesis pathway found only in filamentous fungi, in which lysine is synthesized via the alpha-aminoadipate pathway. In this pathway, homoaconitase catalyzes the conversion of cis-homoaconitic acid into homoisocitric acid. The reaction mechanism is believed to be similar to that of other aconitases.
Probab=100.00 E-value=1.1e-103 Score=855.21 Aligned_cols=347 Identities=31% Similarity=0.505 Sum_probs=311.1
Q ss_pred HHhcCCCCCccCCCCceEEEccCCcccCCCCchhHHHHhHHHHHHHhhhhhhhhhhhccccCcceeeCCCCceecccccc
Q 003793 5 MKNLNSDPKKINPLVPVDLVVDHSVQVDVARSENAVQANMEFEFQRNQERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLE 84 (795)
Q Consensus 5 ~~~~g~~~~~~~P~~pv~lv~DH~v~~~~~~~~~a~~~n~~~e~~rn~e~~~fl~~~~~~~~~~~~~~pg~GI~Hqv~~E 84 (795)
+.++|.+ ++++|.+ +.+++||++|+.... .+..++.+++|+|. | +|+|+++|+|||||+++|
T Consensus 15 ~~~~g~~-~v~~p~~-~~~~~DH~vp~~~~~--~~~~~~~lr~~ak~-------------~-gi~~~~~g~GI~Hqv~~E 76 (363)
T cd01582 15 FMSIGAT-KIHNPDQ-IVMTLDHDVQNKSEK--NLKKYKNIESFAKK-------------H-GIDFYPAGRGIGHQIMIE 76 (363)
T ss_pred HHHcCCC-ccCCCCC-EEEEcCCCCCCCCHH--HHHHHHHHHHHHHH-------------h-CCeEECCCCCEEEEeccc
Confidence 5567764 6899997 999999999997543 44566666666663 2 578899999999999999
Q ss_pred cccceeecCCCccccC-eEEecCCCCCccCccccccccccHHHHHHHHccCceeeeCCcEEEEEEeccCCCCCChhhHHH
Q 003793 85 YLGRVVFNTDGILYPD-SVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLTGKLRDGVTATDLVL 163 (795)
Q Consensus 85 ~~a~~v~~~~G~~~P~-~ivGtDSHT~~~GalG~la~GvGg~e~~~~m~g~~~~~~vPevv~V~l~G~l~~gVtakDviL 163 (795)
+|+++|+ ++|||||||||+||||+||||||++|++.+|+++++|+++||+|+|+|+|+|++||++|||||
T Consensus 77 ---------~g~~~PG~~ivg~DSHT~t~GalGa~a~GvG~td~~~~~~tG~~w~~vPe~i~v~l~G~l~~gV~aKDviL 147 (363)
T cd01582 77 ---------EGYAFPGTLAVASDSHSNMYGGVGCLGTPIVRTDAAAIWATGQTWWQIPPVAKVELKGQLPKGVTGKDVIV 147 (363)
T ss_pred ---------cCccCCCeEEEecCCCccccccchheEeccCHHHHHHHHHhCCeeecCCCEEEEEEecccCCCCCHHHHHH
Confidence 8899996 679999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCccceEEEEecCcCCCCCcccchhhcccccccCceeeeeeCChHHHHHHHhcCCChhhHHHHHHHHHHhhh
Q 003793 164 TVTQMLRKHGVVGKFVEFYGEGMGQLPLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVSMIEEYLRANKM 243 (795)
Q Consensus 164 ~i~~~l~~~G~~g~~vEf~G~gv~~Ls~~~R~TI~NMa~E~GA~~~~fp~D~~t~~yL~~~gr~~~~~~~~~~y~~~~~l 243 (795)
+|+++|+.+|++||+|||+|||+++||+++|||||||++|+||+++|||+|
T Consensus 148 ~li~~l~~~g~~~~~vEf~G~~i~~Ls~~~R~Ti~NMa~E~GA~~~i~~~D----------------------------- 198 (363)
T cd01582 148 ALCGLFNKDQVLNHAIEFTGSGLNSLSVDTRLTIANMTTEWGALSGLFPTD----------------------------- 198 (363)
T ss_pred HHHHHhCcCCceeEEEEEECCccccCCHHHHhhHHhcccccCcceeEeccC-----------------------------
Confidence 999999999999999999999999999999999999999999999999988
Q ss_pred cccCCCCCCCCccceEEEEECCCccceeecCCCCCCccccCCcchhhHHhhhccccccCCCCCccccccccccccCCCcc
Q 003793 244 FVDYNEPEQERSYSSYLQLDLADVEPCISGPKRPHDRVPLKDMKADWHACLENQVGFKGFAVPKQEQDKVAKFSFHGQPA 323 (795)
Q Consensus 244 ~~~~~~~D~~a~Y~~vieiDLs~leP~VA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~ 323 (795)
+++++||||+|||+||+|++|+|+.|+++++.. +
T Consensus 199 -------------~~~~~iDls~leP~va~P~~p~~~~~~~~~~~~------------~--------------------- 232 (363)
T cd01582 199 -------------AKHLILDLSTLSPYVSGPNSVKVSTPLKELEAQ------------N--------------------- 232 (363)
T ss_pred -------------ceEEEEEcccceeeeeCCCCCCCcCCHHHhhhc------------C---------------------
Confidence 456999999999999999999999999987410 1
Q ss_pred cccCccEEEEEEecCCCCCCHHHHHHHHHHHHHHHhcC-CccCCceeEEEecCcHHHHHHHHHcCcHHHHHhcCcEEecc
Q 003793 324 ELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELG-LEVKPWVKTSLAPGSGVVTKYLQQSGLQKYLNQQGFHIVGY 402 (795)
Q Consensus 324 ~l~~g~V~~a~IGSCTN~~~~dl~~aA~lLa~~a~~~G-~kv~~~V~~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~i~~~ 402 (795)
-+|++||||||||||++||+.||++|.++..++| ++|+||||++|+|||++|+++|+++|++++|.++||.|.+|
T Consensus 233 ----~~id~~~IGSCTngr~~Dl~~aA~il~gk~~~~~~~~v~~~Vr~~v~PgS~~V~~~a~~~Gl~~~l~~aGa~i~~p 308 (363)
T cd01582 233 ----IKINKAYLVSCTNSRASDIAAAADVVKGKKEKNGKIPVAPGVEFYVAAASSEVQAAAEKNGDWQTLLEAGATPLPA 308 (363)
T ss_pred ----ceEeEEEEEcCCCCChHHHHHHHHHHhCccccccCcccCCCceEEEeCCCHHHHHHHHHcCcHHHHHHCCCEEECC
Confidence 1377999999999999999999999932222222 23999999999999999999999999999999999999999
Q ss_pred CCccccCCCCCCChhhhhhcccCceeEEEEeccCCCCCCCCCCccCCceecChHHHHHHHhcccc
Q 003793 403 GCTTCIGNSGDLDESVATAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTV 467 (795)
Q Consensus 403 gCg~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~vaA~AlaG~I 467 (795)
|||+|+|+++++.++ +++ +|||+||||+||||+..+.+|||||++||||||+|+|
T Consensus 309 gCg~C~G~~~~~~~~-------ge~---~vsT~NRNF~GR~G~~~~~~yLaSP~~vaAsAi~G~i 363 (363)
T cd01582 309 GCGPCIGLGQGLLEP-------GEV---GISATNRNFKGRMGSTEALAYLASPAVVAASAISGKI 363 (363)
T ss_pred CCeeccCCCCCCCCC-------CCE---EEEecCCCCCcCCCCCCCcEEECCHHHHHHHHhCccC
Confidence 999999999776544 443 6899999999999998889999999999999999986
No 29
>cd01581 AcnB Aconitate hydratase B catalyses the formation of cis-aconitate from citrate as part of the TCA cycle. Aconitase B catalytic domain. Aconitate hydratase B catalyses the formation of cis-aconitate from citrate as part of the TCA cycle. Aconitase has an active (4FE-4S) and an inactive (3FE-4S) form. The active cluster is part of the catalytic site that interconverts citrate, cis-aconitase and isocitrate. The domain architecture of aconitase B is different from other aconitases in that the catalytic domain is normally found at C-terminus for other aconitases, but it is at N-terminus for B family. It also has a HEAT domain before domain 4 which plays a role in protein-protein interaction. This alignment is the core domain including domains 1,2 and 3.
Probab=100.00 E-value=1.2e-100 Score=848.06 Aligned_cols=367 Identities=25% Similarity=0.386 Sum_probs=323.5
Q ss_pred HHHHhcCCCCCccCCCCceEEEccCCcccCCCCchhHHHHhHHHHHHHhhhhhhhhhhhccccCcceeeCCCCceecccc
Q 003793 3 DAMKNLNSDPKKINPLVPVDLVVDHSVQVDVARSENAVQANMEFEFQRNQERFAFLKWGSSAFHNMLVVPPGSGIVHQVN 82 (795)
Q Consensus 3 ~~~~~~g~~~~~~~P~~pv~lv~DH~v~~~~~~~~~a~~~n~~~e~~rn~e~~~fl~~~~~~~~~~~~~~pg~GI~Hqv~ 82 (795)
+.|+++|. +++||.+ +.+++||++|+.+. ..+..++.+++|.+++ +++|+++|+|||||++
T Consensus 40 ~~f~~~~~--~v~d~~~-~v~~~DH~~p~~~~--~~a~~~~~~r~fa~~~--------------gi~~~~~g~GI~Hqv~ 100 (436)
T cd01581 40 DELKELAC--LGFSADL-VMQSFCHTAAYPKP--VDVKTHRTLPDFISNR--------------GGVALRPGDGVIHSWL 100 (436)
T ss_pred HHHHHcCC--cccCCcc-EEEEcCCCCCCCCH--HHHHHHHHHHHHHHHc--------------CCcEECCCCCeeeeee
Confidence 56888866 5799997 99999999999755 4555788999999963 3567899999999998
Q ss_pred cccccceeecCCCccccC-eEEecCCCCCccCccccccccccHHHHHHHHccCceeeeCCcEEEEEEeccCCCCCChhhH
Q 003793 83 LEYLGRVVFNTDGILYPD-SVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLTGKLRDGVTATDL 161 (795)
Q Consensus 83 ~E~~a~~v~~~~G~~~P~-~ivGtDSHT~~~GalG~la~GvGg~e~~~~m~g~~~~~~vPevv~V~l~G~l~~gVtakDv 161 (795)
.| +++|+ ++|||||||||+|| ||||+|++|++.+|++|++||++||+|+|+|+|+|++||++|||
T Consensus 101 ~e-----------~~~PG~~ivGtDSHT~t~ga---~a~GvG~td~a~~latG~~w~~vPeti~V~l~G~l~~gV~aKDv 166 (436)
T cd01581 101 NR-----------MLLPDTVGTGGDSHTRFPIG---ISFPAGSGLVAFAAATGVMPLDMPESVLVRFKGKMQPGITLRDL 166 (436)
T ss_pred hh-----------hccCCceEEeeccccCCCCc---eEEeecHHHHHHHHHhCeeeeeCCCEEEEEEecccCCCcChhHH
Confidence 87 24775 67999999999986 79999999999999999999999999999999999999999999
Q ss_pred HHHHH----HH--------HHhcCccceEEEEecCcCCCCCcccchhhcccccccCceeeeeeCChHH-HHHHHhc----
Q 003793 162 VLTVT----QM--------LRKHGVVGKFVEFYGEGMGQLPLADRATIANMSPEYGATMGFFPVDHVT-LQYLKLT---- 224 (795)
Q Consensus 162 iL~i~----~~--------l~~~G~~g~~vEf~G~gv~~Ls~~~R~TI~NMa~E~GA~~~~fp~D~~t-~~yL~~~---- 224 (795)
||+|+ ++ ++.+|++||+|||. |+++||+++|||||||++|+|||+||||+|++| ++||+.+
T Consensus 167 iL~i~~~li~~g~l~v~~~~g~~g~~g~~iEf~--Gv~~Ls~~~R~Ti~NMa~E~GA~~gif~~De~t~~~yL~~~~~~~ 244 (436)
T cd01581 167 VNAIPYYAIQQGLLTVEKKGKKNVFNGRILEIE--GLPDLKVEQAFELTDASAERSAAACTVRLDKEPVIEYLESNVVLM 244 (436)
T ss_pred HHHHHHHHHhcccccccccCCcccccceEEEEC--CcccCCHhHHHHHHhhhhhhCceEEEecCCHhHHHHHHHhCcccc
Confidence 99864 44 44446699999996 599999999999999999999999999999988 8999996
Q ss_pred ------CCCh-----hhHHHHHHHHHHhhhcccCCCCCCCCccceEEEEECCCc-cceeecCCCCCCccccCCcchhhHH
Q 003793 225 ------GRSD-----ETVSMIEEYLRANKMFVDYNEPEQERSYSSYLQLDLADV-EPCISGPKRPHDRVPLKDMKADWHA 292 (795)
Q Consensus 225 ------gr~~-----~~~~~~~~y~~~~~l~~~~~~~D~~a~Y~~vieiDLs~l-eP~VA~P~~P~~~~~v~e~~~~~~~ 292 (795)
||.+ ...++.++|.+.+.+| .+|++|.|+++++||||+| ||+||+|++|+|++|++|+..
T Consensus 245 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~----~~D~da~Y~~~ieiDls~l~eP~VA~P~~pdn~~~v~e~~g---- 316 (436)
T cd01581 245 KIMIANGYDDARTLLRRIIAMEEWLANPPLL----EPDADAEYAAVIEIDLDDIKEPILACPNDPDDVKLLSEVAG---- 316 (436)
T ss_pred ccccccCcccccchhHHHHHHHHHHhhcccc----cCCCCCceEEEEEEEhHhCCCCeecCCCChhhceEhHHhcC----
Confidence 5532 3345667787777777 5799999999999999999 999999999999999999752
Q ss_pred hhhccccccCCCCCccccccccccccCCCcccccCccEEEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCccCCceeEEE
Q 003793 293 CLENQVGFKGFAVPKQEQDKVAKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLEVKPWVKTSL 372 (795)
Q Consensus 293 ~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IGSCTN~~~~dl~~aA~lLa~~a~~~G~kv~~~V~~~v 372 (795)
. +|+++||||||| |++||+.||.+| ||+|++ .||++|
T Consensus 317 ----------~-------------------------~id~~~IGSCTn-r~eDl~~AA~il------kg~~~~-~vr~~v 353 (436)
T cd01581 317 ----------K-------------------------KIDEVFIGSCMT-NIGHFRAAAKIL------RGKEFK-PTRLWV 353 (436)
T ss_pred ----------C-------------------------ccceEEEecCCC-CHHHHHHHHHHH------cCCCCC-CCCEEE
Confidence 1 256899999999 999999999999 999964 599999
Q ss_pred ecCcHHHHHHHHHcCcHHHHHhcCcEEeccCCccccCCCCCCChhhhhhcccCceeEEEEeccCCCCCCCCCCccCCcee
Q 003793 373 APGSGVVTKYLQQSGLQKYLNQQGFHIVGYGCTTCIGNSGDLDESVATAITENDIVAAAVLSGNRNFEGRVHPLTRANYL 452 (795)
Q Consensus 373 ~PgS~~V~~~l~~~Gl~~~l~~aG~~i~~~gCg~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yL 452 (795)
+|||++|+++|+++|++++|+++||.|.+||||+|+|+++.+ .+|++ +|||+||||+||||+ ...+||
T Consensus 354 ~P~S~~V~~~~~~~G~~~~l~~aGa~v~~pgCg~C~G~~~~~--------~~gev---~vsT~NRNF~GRmG~-~~~~yL 421 (436)
T cd01581 354 APPTRMDWAILQEEGYYSIFGDAGARTEMPGCSLCMGNQARV--------ADGAT---VFSTSTRNFDNRVGK-GAEVYL 421 (436)
T ss_pred ECCCHHHHHHHHHcChHHHHHHcCCEECCCccccccCcCCcC--------CCCCE---EEEecCCCCCCCCCC-CCcEEE
Confidence 999999999999999999999999999999999999985543 33554 789999999999999 667899
Q ss_pred cChHHHHHHHhcccc
Q 003793 453 ASPPLVVAYALAGTV 467 (795)
Q Consensus 453 aSP~~vaA~AlaG~I 467 (795)
|||++||||||+|+|
T Consensus 422 aSP~~vAAsAi~G~i 436 (436)
T cd01581 422 GSAELAAVCALLGRI 436 (436)
T ss_pred CCHHHHHHHHhCccC
Confidence 999999999999986
No 30
>cd01351 Aconitase Aconitase catalytic domain; Aconitase catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Aconitase catalytic domain. Aconitase (aconitate hydratase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediate product during the course of the reaction. In eukaryotes two isozymes of aconitase are known to exist: one found in the mitochondrial matrix and the other found in the cytoplasm. Aconitase, in its active form, contains a 4Fe-4S iron-sulfur cluster; three cysteine residues have been shown to be ligands of the 4Fe-4S cluster. This is the Aconitase core domain, including structural domains 1, 2 and 3, which binds the Fe-S cluster. The aconitase family also contains the following proteins: - Iron-responsive element binding protein (IRE-BP), a cytosolic protein that binds to iron-responsive elements (IREs). IREs are stem-loop structures found in the 5'
Probab=100.00 E-value=6.8e-98 Score=824.66 Aligned_cols=375 Identities=38% Similarity=0.616 Sum_probs=339.0
Q ss_pred HHHHhcCCCCCccCCCCceEEEccCCcccCCCCchhHHHHhHHHHHHHhhhhhhhhhhhccccCcceeeCCCCceecccc
Q 003793 3 DAMKNLNSDPKKINPLVPVDLVVDHSVQVDVARSENAVQANMEFEFQRNQERFAFLKWGSSAFHNMLVVPPGSGIVHQVN 82 (795)
Q Consensus 3 ~~~~~~g~~~~~~~P~~pv~lv~DH~v~~~~~~~~~a~~~n~~~e~~rn~e~~~fl~~~~~~~~~~~~~~pg~GI~Hqv~ 82 (795)
+.|+++|.+.++++|. +|.+++||++|++. .+|.++|+|++|.+++|+ |+|+++|+|||||++
T Consensus 14 ~~~~~~~~~~~v~~p~-~v~~~~DH~~p~~~---------------~~~~~~~~~lr~f~~~~g-i~~~~~g~Gi~H~~~ 76 (389)
T cd01351 14 KAFEILAALGKVADPS-QIACVHDHAVQLEK---------------PVNNEGHKFLSFFAALQG-IAFYRPGVGIIHQIM 76 (389)
T ss_pred HHHHHcCCCCCCCCcc-cEEEEECCCCCCCC---------------hhHHHHHHHHHHHHHHcC-CcEECCCCCeECccc
Confidence 5678888753578898 59999999999952 255566677777777775 889999999999999
Q ss_pred cccccceeecCCCcccc-CeEEecCCCCCccCccccccccccHHHHHHHHccCceeeeCCcEEEEEEeccCCCCCChhhH
Q 003793 83 LEYLGRVVFNTDGILYP-DSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLTGKLRDGVTATDL 161 (795)
Q Consensus 83 ~E~~a~~v~~~~G~~~P-~~ivGtDSHT~~~GalG~la~GvGg~e~~~~m~g~~~~~~vPevv~V~l~G~l~~gVtakDv 161 (795)
+|++ ..| ++++|+||||||+||||+++||+|++|++++|+||++|+++|++++|+|+|+|++||++||+
T Consensus 77 ~E~~----------~~pG~~i~g~DSHT~t~Ga~ga~a~G~G~td~~~~~~tg~~~~~vP~~~~v~l~G~l~~~V~~kDl 146 (389)
T cd01351 77 VENL----------ALPGDLLVGSDSHTTSYGGLGAISTGAGGGDVAFVMAGGPAWLKKPEVVGVNLTGKLSPGVTGKDV 146 (389)
T ss_pred cccc----------CCCCCEEEEcCcCccccCcchheEEeeeHHHHHHHHhcCceeccCCcEEEEEEecccCCCceeeHH
Confidence 9944 355 68999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCccceEEEEecCcCCCCCcccchhhcccccccCceeeeeeCChHHHHHHHhcCCChhhHHHHHHHHHHh
Q 003793 162 VLTVTQMLRKHGVVGKFVEFYGEGMGQLPLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVSMIEEYLRAN 241 (795)
Q Consensus 162 iL~i~~~l~~~G~~g~~vEf~G~gv~~Ls~~~R~TI~NMa~E~GA~~~~fp~D~~t~~yL~~~gr~~~~~~~~~~y~~~~ 241 (795)
+|+|++.|+.+|++|+++||+|+|+++||+++|+|||||++|+||++|+||+|++|++||+.++|++... +++.|.+.
T Consensus 147 ~l~ilg~lg~~g~~~~~~Ef~G~~~~~ls~d~r~tl~nm~~E~ga~~gi~p~D~~t~~yl~~~~~~~~~~-~~~~~~~~- 224 (389)
T cd01351 147 VLKLGGIVGVDGVLNRIVEFYGEGVSSLSIEDRLTICNMMAELGATTGIFPEDKTTLKWLEATGRPLLKN-LWLAFPEE- 224 (389)
T ss_pred HHHHHHHHhhcccCceEEEEECCccCCCCHHHHHHHHHHhHhhhheEeEeCCcHHHHHHHHhcCCchhhH-HHHHHHhc-
Confidence 9999999999999999999999999999999999999999999999999999999999999999887543 33333332
Q ss_pred hhcccCCCCCCCCccceEEEEECCCccceeecCCCCCCccccCCcchhhHHhhhccccccCCCCCccccccccccccCCC
Q 003793 242 KMFVDYNEPEQERSYSSYLQLDLADVEPCISGPKRPHDRVPLKDMKADWHACLENQVGFKGFAVPKQEQDKVAKFSFHGQ 321 (795)
Q Consensus 242 ~l~~~~~~~D~~a~Y~~vieiDLs~leP~VA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~ 321 (795)
+ .+|++|.|+++++||||+|+|+||+|++|||++|++++..
T Consensus 225 --l----~~d~~a~y~~~i~iDls~lep~va~p~~p~~~~~v~~~~~--------------------------------- 265 (389)
T cd01351 225 --L----LADEGAEYDQVIEIDLSELEPDISGPNRPDDAVSVSEVEG--------------------------------- 265 (389)
T ss_pred --c----CCCCCCCeeEEEEEEhhhceeEEecCCChhhccChhhccC---------------------------------
Confidence 2 5899999999999999999999999999999999998752
Q ss_pred cccccCccEEEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCccCCceeEEEecCcHHHHHHHHHcCcHHHHHhcCcEEec
Q 003793 322 PAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLEVKPWVKTSLAPGSGVVTKYLQQSGLQKYLNQQGFHIVG 401 (795)
Q Consensus 322 ~~~l~~g~V~~a~IGSCTN~~~~dl~~aA~lLa~~a~~~G~kv~~~V~~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~i~~ 401 (795)
.+|+++|||||||+|++||+.||++| ||+||+++|+++|+|||++|+++++++|++++|+++||.|..
T Consensus 266 ------~~Id~v~IGSCtn~~~~dl~~aA~il------kgk~v~~~v~~~v~P~S~~v~~~a~~~Gl~~~l~~aG~~i~~ 333 (389)
T cd01351 266 ------TKIDQVLIGSCTNNRYSDMLAAAKLL------KGAKVAPGVRLIVTPGSRMVYATLSREGYYEILVDSGARILP 333 (389)
T ss_pred ------CceeEEEEecCCCCCHHHHHHHHHHH------cCCcCCCCceEEEECCCHHHHHHHHHcChHHHHHHCCCEEeC
Confidence 14789999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred cCCccccCCCCCCChhhhhhcccCceeEEEEeccCCCCCCCCCCccCCceecChHHHHHHHhcccc
Q 003793 402 YGCTTCIGNSGDLDESVATAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTV 467 (795)
Q Consensus 402 ~gCg~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~vaA~AlaG~I 467 (795)
+||++|+|++.++..+ ++ ++|||+||||+||||+..+.+|||||+|||||||+|+|
T Consensus 334 ~gC~~C~G~~~~~~~~-------g~---~~vst~nRNF~GR~g~~~~~~yLaSP~~vaAsAl~G~i 389 (389)
T cd01351 334 PGCGPCMGNGARLVAD-------GE---VGVSSGNRNFPGRLGTYERHVYLASPELAAATAIAGKI 389 (389)
T ss_pred CCCcccCCCCCCcCCC-------Cc---EEEEeecCCCccccCCCCCceEECCHHHHHHHHhcCcC
Confidence 9999999999776544 33 36899999999999998888999999999999999986
No 31
>PRK09238 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; Validated
Probab=100.00 E-value=5.4e-93 Score=826.45 Aligned_cols=370 Identities=23% Similarity=0.373 Sum_probs=330.2
Q ss_pred hHHHHhcCCCCCccCCCCceEEEccCCcccCCCCchhHHHHhHHHHHHHhhhhhhhhhhhccccCcceeeCCCCceeccc
Q 003793 2 RDAMKNLNSDPKKINPLVPVDLVVDHSVQVDVARSENAVQANMEFEFQRNQERFAFLKWGSSAFHNMLVVPPGSGIVHQV 81 (795)
Q Consensus 2 r~~~~~~g~~~~~~~P~~pv~lv~DH~v~~~~~~~~~a~~~n~~~e~~rn~e~~~fl~~~~~~~~~~~~~~pg~GI~Hqv 81 (795)
|+.|+++|. .+++|.. |.+++||.+|.... .++..|+.+++|.+++ ++.+++||+|||||+
T Consensus 411 ~~~~~~lg~--~~~~~d~-v~~~~dH~~p~~~~--~~a~~~~~lr~Fa~~~--------------Gi~~~~pG~GI~H~v 471 (835)
T PRK09238 411 RDELKDLAC--LGFSADL-VMQSFCHTAAYPKP--VDVKTHHTLPDFIMNR--------------GGVSLRPGDGVIHSW 471 (835)
T ss_pred HHHHHHcCC--cccCCCc-EEEEccCCCCCCCH--HHHHHHHHHHHHHHHc--------------CCcEeCCCCCeeeec
Confidence 688999998 6899997 99999999998754 5666899999999963 244578999999999
Q ss_pred ccccccceeecCCCccccCe-EEecCCCCCccCccccccccccHHHHHHHHccCceeeeCCcEEEEEEeccCCCCCChhh
Q 003793 82 NLEYLGRVVFNTDGILYPDS-VVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLTGKLRDGVTATD 160 (795)
Q Consensus 82 ~~E~~a~~v~~~~G~~~P~~-ivGtDSHT~~~GalG~la~GvGg~e~~~~m~g~~~~~~vPevv~V~l~G~l~~gVtakD 160 (795)
+ +++++||+ ++||||||||+|| ||||+|++|++.+|++|++||+|||+|+|+|+|+|++|||+||
T Consensus 472 l-----------~~~~~Pg~vivG~DSHT~t~ga---~a~G~Gs~~vA~a~atG~~~l~vPesv~V~l~G~L~~gVtaKD 537 (835)
T PRK09238 472 L-----------NRMLLPDTVGTGGDSHTRFPIG---ISFPAGSGLVAFAAATGVMPLDMPESVLVRFKGEMQPGITLRD 537 (835)
T ss_pred c-----------cccccCCeEEEecccccCCCCc---eEeccchHHHHHHHhhCceEEeCCCEEEEEEecccCCCcCHhH
Confidence 6 35788974 6999999999997 7899999999999999999999999999999999999999999
Q ss_pred HHHHH----HHH--------HHhcCccceEEEEecCcCCCCCcccchhhcccccccCceeeeee-CChHHHHHHHhc---
Q 003793 161 LVLTV----TQM--------LRKHGVVGKFVEFYGEGMGQLPLADRATIANMSPEYGATMGFFP-VDHVTLQYLKLT--- 224 (795)
Q Consensus 161 viL~i----~~~--------l~~~G~~g~~vEf~G~gv~~Ls~~~R~TI~NMa~E~GA~~~~fp-~D~~t~~yL~~~--- 224 (795)
|||+| +++ ++.+|++||+|||. |+++||+++|||||||++|+||++++|| +|++|++||+.+
T Consensus 538 viL~I~~~~i~~g~ltv~~~~g~~~~~gr~lEf~--Gv~~Lsve~R~Tl~NMa~E~GA~~~i~~~~de~t~eYL~~~~~~ 615 (835)
T PRK09238 538 LVHAIPYYAIKQGLLTVEKKGKKNIFSGRILEIE--GLPDLKVEQAFELTDASAERSAAGCTIKLSKEPIIEYLRSNIVL 615 (835)
T ss_pred HHHHHHHHHHhcccccccccCCccceeeeEEEEc--CcccCCHHHHHhHhhccHhhCceeceecCChHHHHHHHHhcccc
Confidence 99999 442 33445789999995 6999999999999999999999999999 788999999986
Q ss_pred -------CCC-----hhhHHHHHHHHHHhhhcccCCCCCCCCccceEEEEECCCc-cceeecCCCCCCccccCCcchhhH
Q 003793 225 -------GRS-----DETVSMIEEYLRANKMFVDYNEPEQERSYSSYLQLDLADV-EPCISGPKRPHDRVPLKDMKADWH 291 (795)
Q Consensus 225 -------gr~-----~~~~~~~~~y~~~~~l~~~~~~~D~~a~Y~~vieiDLs~l-eP~VA~P~~P~~~~~v~e~~~~~~ 291 (795)
||. ...++.+++|++.+.+| .+|++|.|+++++||||+| ||+||+|++|||++||+|+++
T Consensus 616 ~~~mi~~g~~~~~~~~~r~~~~~~w~~~~~ll----~aD~dA~Y~~vieIDLs~i~eP~VA~P~~Pdnv~~lsev~g--- 688 (835)
T PRK09238 616 LKWMIAEGYGDARTLERRIAAMEEWLANPELL----EADADAEYAAVIEIDLAEIKEPILACPNDPDDVRLLSEVAG--- 688 (835)
T ss_pred cccccccCcccccchhHHHHHHHHHHhhcccc----cCCCCCceEEEEEEEhhhcCCCeecCCCChhhheEHHHhcC---
Confidence 664 23456788899888887 5899999999999999999 999999999999999999862
Q ss_pred HhhhccccccCCCCCccccccccccccCCCcccccCccEEEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCccCCceeEE
Q 003793 292 ACLENQVGFKGFAVPKQEQDKVAKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLEVKPWVKTS 371 (795)
Q Consensus 292 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IGSCTN~~~~dl~~aA~lLa~~a~~~G~kv~~~V~~~ 371 (795)
. .|+++|||||| |+++|++.||.+| ||+++++.||++
T Consensus 689 -----------~-------------------------~Id~vfIGSCT-gr~~DlraAA~IL------kg~~v~~~vr~~ 725 (835)
T PRK09238 689 -----------T-------------------------KIDEVFIGSCM-TNIGHFRAAGKLL------EGKKGQLPTRLW 725 (835)
T ss_pred -----------C-------------------------ccCeEEEEcCC-CCHHHHHHHHHHH------cCCccCCCCCEE
Confidence 1 36689999999 9999999999999 999999999999
Q ss_pred EecCcHHHHHHHHHcCcHHHHHhcCcEEeccCCccccCCCCCCChhhhhhcccCceeEEEEeccCCCCCCCCCCccCCce
Q 003793 372 LAPGSGVVTKYLQQSGLQKYLNQQGFHIVGYGCTTCIGNSGDLDESVATAITENDIVAAAVLSGNRNFEGRVHPLTRANY 451 (795)
Q Consensus 372 v~PgS~~V~~~l~~~Gl~~~l~~aG~~i~~~gCg~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~y 451 (795)
|+|||++|+++|+++|++++|.++||+|..||||+|+|+.+.+ .+|++ +|||+||||+||||+ .+.+|
T Consensus 726 V~P~S~~v~~~l~~eG~~~~l~~AGa~v~~pGCg~C~G~~~~~--------~~ge~---~vSTsNRNF~GRmG~-~a~vY 793 (835)
T PRK09238 726 VAPPTKMDADQLTEEGYYSIFGKAGARIEMPGCSLCMGNQARV--------ADGAT---VFSTSTRNFPNRLGK-GANVY 793 (835)
T ss_pred EECCCHHHHHHHHHcCcHHHHHHcCCEECCCcchhhhCccCcC--------CCCCE---EEeecCCCCCCCCCC-CCCeE
Confidence 9999999999999999999999999999999999999996543 33554 689999999999997 56789
Q ss_pred ecChHHHHHHHhccccc
Q 003793 452 LASPPLVVAYALAGTVD 468 (795)
Q Consensus 452 LaSP~~vaA~AlaG~I~ 468 (795)
|+||++||||||+|+|+
T Consensus 794 LaSP~~aAAsAi~G~I~ 810 (835)
T PRK09238 794 LGSAELAAVCALLGRIP 810 (835)
T ss_pred eCCHHHHHHHHhCCccC
Confidence 99999999999999995
No 32
>TIGR00117 acnB aconitate hydratase 2. Aconitate hydratase (aconitase) is an enzyme of the TCA cycle. This model describes aconitase 2, AcnB, which has weak similarity to aconitase 1. It is found almost exclusively in the Proteobacteria.
Probab=100.00 E-value=8.4e-92 Score=813.97 Aligned_cols=369 Identities=23% Similarity=0.372 Sum_probs=327.0
Q ss_pred hHHHHhcCCCCCccCCCCceEEEccCCcccCCCCchhHHHHhHHHHHHHhhhhhhhhhhhccccCcceeeCCCCceeccc
Q 003793 2 RDAMKNLNSDPKKINPLVPVDLVVDHSVQVDVARSENAVQANMEFEFQRNQERFAFLKWGSSAFHNMLVVPPGSGIVHQV 81 (795)
Q Consensus 2 r~~~~~~g~~~~~~~P~~pv~lv~DH~v~~~~~~~~~a~~~n~~~e~~rn~e~~~fl~~~~~~~~~~~~~~pg~GI~Hqv 81 (795)
|+.|+++|. .+++|.. |.+++||++|.... .++..|+.+++|.+++ ++.+++||+|||||+
T Consensus 412 ~~~~~~l~~--~vfdpd~-v~~~~DH~~p~~~~--~~a~~~~~lr~Fa~~~--------------Gi~~~~pG~GI~Hqv 472 (844)
T TIGR00117 412 RDELKELAC--LGFSADL-VLQSFCHTAAYPKP--VDVNTHHTLPDFIMNR--------------GGVALRPGDGVIHSW 472 (844)
T ss_pred HHHHHHhCC--ceECCCc-EEEEeCCCCCCCCH--HHHHHHHHHHHHHHHc--------------CCeEECCCCceeccc
Confidence 688999976 5899997 99999999988644 5667899999999863 345688999999999
Q ss_pred ccccccceeecCCCccccC-eEEecCCCCCccCccccccccccHHHHHHHHccCceeeeCCcEEEEEEeccCCCCCChhh
Q 003793 82 NLEYLGRVVFNTDGILYPD-SVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLTGKLRDGVTATD 160 (795)
Q Consensus 82 ~~E~~a~~v~~~~G~~~P~-~ivGtDSHT~~~GalG~la~GvGg~e~~~~m~g~~~~~~vPevv~V~l~G~l~~gVtakD 160 (795)
+.| +++|| +++||||||||+ +| ||+|+|++|++.+|++|++||+|||+|+|+|+|+|++|||+||
T Consensus 473 l~e-----------~~~PG~vivG~DSHT~t~--~G-~a~G~Gs~dvA~a~atG~~~l~vPesV~V~l~G~L~~gVtaKD 538 (844)
T TIGR00117 473 LNR-----------MLLPDTVGTGGDSHTRFP--LG-ISFPAGSGLVAFAAATGVMPLDMPESVLVRFKGEMQPGITLRD 538 (844)
T ss_pred chh-----------hccCCeeEEecccccccc--ce-EEecccHHHHHHHHHhCeeeEeCCCEEEEEEeccCCCCcChhh
Confidence 876 35786 569999999997 67 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH------h------cCccceEEEEecCcCCCCCcccchhhcccccccCceeeeeeCChH-HHHHHHhc---
Q 003793 161 LVLTVTQMLR------K------HGVVGKFVEFYGEGMGQLPLADRATIANMSPEYGATMGFFPVDHV-TLQYLKLT--- 224 (795)
Q Consensus 161 viL~i~~~l~------~------~G~~g~~vEf~G~gv~~Ls~~~R~TI~NMa~E~GA~~~~fp~D~~-t~~yL~~~--- 224 (795)
|||+|...+. . +|++||+|||. |+++||+++|||||||++|+||++|+||+|++ |++||+.+
T Consensus 539 liL~I~~~~i~~G~ltv~k~g~~ng~~gk~lEf~--Gi~~Lsve~R~Ti~NMaaE~GA~~gii~~D~e~t~eYLk~~~~~ 616 (844)
T TIGR00117 539 LVNAIPLYAIKQGLLTVEKKGKKNVFNGRILEIE--GLPDLKVEQAFELTDASAERSAAGCTIKLNKEPIIEYLNSNIVL 616 (844)
T ss_pred HHHHHHHHHHhcCeeecccccccccccceEEEEC--CcccCCHhHHHHHhhhhhhhCceEEEeccChHHHHHHHHhCccc
Confidence 9999953333 2 45789999995 59999999999999999999999999999965 89999995
Q ss_pred -------CCCh-----hhHHHHHHHHHHhhhcccCCCCCCCCccceEEEEECCCc-cceeecCCCCCCccccCCcchhhH
Q 003793 225 -------GRSD-----ETVSMIEEYLRANKMFVDYNEPEQERSYSSYLQLDLADV-EPCISGPKRPHDRVPLKDMKADWH 291 (795)
Q Consensus 225 -------gr~~-----~~~~~~~~y~~~~~l~~~~~~~D~~a~Y~~vieiDLs~l-eP~VA~P~~P~~~~~v~e~~~~~~ 291 (795)
||.+ .+++.+++|++...+| .+|++|.|+++|+||||+| ||+||+|++|||++||+|+.+
T Consensus 617 ~~~mi~~G~~~~~~~~~~~~~~e~w~~~~~ll----~aD~dA~Y~~vieIDLs~i~EP~VA~P~~PDnv~pvsev~g--- 689 (844)
T TIGR00117 617 LKWMIAEGYGDRRTLERRIQGMEKWLANPELL----EADADAEYAAVIEIDLAEIKEPILAAPNDPDDVRPLSEVQG--- 689 (844)
T ss_pred cccccccCCcchhhhhHHHHHHHHHHhhcccc----cCCCCCceEEEEEEEhHhCCCCeeCCCCChhhccChHhhcC---
Confidence 6643 3567788898888777 5899999999999999999 999999999999999999862
Q ss_pred HhhhccccccCCCCCccccccccccccCCCcccccCccEEEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCccCCceeEE
Q 003793 292 ACLENQVGFKGFAVPKQEQDKVAKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLEVKPWVKTS 371 (795)
Q Consensus 292 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IGSCTN~~~~dl~~aA~lLa~~a~~~G~kv~~~V~~~ 371 (795)
. .|+++|||||| ++++|++.||.+| ||+++++ ||++
T Consensus 690 -----------~-------------------------~IdqVfIGSCT-~n~~DlraAA~IL------kg~~v~~-vrl~ 725 (844)
T TIGR00117 690 -----------D-------------------------KIDEVFIGSCM-TNIGHFRAAGKIL------DAAGQLP-TRLW 725 (844)
T ss_pred -----------c-------------------------ccceEEEEcCC-CCHHHHHHHHHHH------cCCCcCC-CCEE
Confidence 1 25689999999 7999999999999 9999988 9999
Q ss_pred EecCcHHHHHHHHHcCcHHHHHhcCcEEeccCCccccCCCCCCChhhhhhcccCceeEEEEeccCCCCCCCCCCccCCce
Q 003793 372 LAPGSGVVTKYLQQSGLQKYLNQQGFHIVGYGCTTCIGNSGDLDESVATAITENDIVAAAVLSGNRNFEGRVHPLTRANY 451 (795)
Q Consensus 372 v~PgS~~V~~~l~~~Gl~~~l~~aG~~i~~~gCg~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~y 451 (795)
|+|||++|+++|+++|++++|.++||+|..||||+|+|+++.+. +|+ ++|||+||||+||||+ .+.+|
T Consensus 726 V~P~S~~V~~~l~~eG~~~~f~~AGa~i~~pGCg~C~Gn~~~v~--------~Ge---~vvSTsNRNF~GRmG~-~a~vY 793 (844)
T TIGR00117 726 VAPPTRMDEQQLTEEGYYSIFGAAGARTEIPGCSLCMGNQARVA--------DGA---TVFSTSTRNFPNRMGT-GANVY 793 (844)
T ss_pred EECCCHHHHHHHHHcCcHHHHHHcCCEECCCccccccCCCCcCC--------CCC---EEEeccCCCCCCCCCC-CccEE
Confidence 99999999999999999999999999999999999999966543 244 3689999999999998 45799
Q ss_pred ecChHHHHHHHhccccc
Q 003793 452 LASPPLVVAYALAGTVD 468 (795)
Q Consensus 452 LaSP~~vaA~AlaG~I~ 468 (795)
||||++||||||+|+|+
T Consensus 794 LaSP~~aAAsAi~G~I~ 810 (844)
T TIGR00117 794 LGSAELAAVCALLGKIP 810 (844)
T ss_pred eCCHHHHHHHHhCcccC
Confidence 99999999999999994
No 33
>PLN00094 aconitate hydratase 2; Provisional
Probab=100.00 E-value=9.1e-90 Score=794.51 Aligned_cols=370 Identities=23% Similarity=0.366 Sum_probs=326.0
Q ss_pred hHHHHhcCCCCCccCCCCceEEEccCCcccCCCCchhHHHHhHHHHHHHhhhhhhhhhhhccccCcceeeCCCCceeccc
Q 003793 2 RDAMKNLNSDPKKINPLVPVDLVVDHSVQVDVARSENAVQANMEFEFQRNQERFAFLKWGSSAFHNMLVVPPGSGIVHQV 81 (795)
Q Consensus 2 r~~~~~~g~~~~~~~P~~pv~lv~DH~v~~~~~~~~~a~~~n~~~e~~rn~e~~~fl~~~~~~~~~~~~~~pg~GI~Hqv 81 (795)
|+.|+++|.. .++|.. |.+++||.+|.... .++..|+.+++|.+++ ++.+++||+|||||+
T Consensus 485 ~~efkel~~~--~~dpdk-v~~~fDH~ap~p~~--~~~~~~~~lr~Fa~~~--------------Gi~~~~~G~GI~Hqv 545 (938)
T PLN00094 485 RDELKDLACL--GFSADL-VMQSFCHTAAYPKP--VDVVTHHTLPDFIRNR--------------GGVSLRPGDGVIHSW 545 (938)
T ss_pred HHHHHHhccc--ccCccc-EEEEccCCCCCCCH--HHHHHHHHHHHHHHHc--------------CCEEECCCCceeccc
Confidence 6889998874 679986 99999999988755 5666788899998853 345788999999998
Q ss_pred ccccccceeecCCCccccC-eEEecCCCCCccCccccccccccHHHHHHHHccCceeeeCCcEEEEEEeccCCCCCChhh
Q 003793 82 NLEYLGRVVFNTDGILYPD-SVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLTGKLRDGVTATD 160 (795)
Q Consensus 82 ~~E~~a~~v~~~~G~~~P~-~ivGtDSHT~~~GalG~la~GvGg~e~~~~m~g~~~~~~vPevv~V~l~G~l~~gVtakD 160 (795)
+.| +++|+ +++|+|||||+..|+ +||.|++|++.+|++|++||+|||+|+|+|+|+|++|||+||
T Consensus 546 L~e-----------~~lPG~vivGgDSHT~fa~GI---sf~aGsgdvA~a~ATG~~wlkvPEsV~V~l~G~L~~gVtaKD 611 (938)
T PLN00094 546 LNR-----------MLLPDTVGTGGDSHTRFPIGI---SFPAGSGLVAFGAATGVIPLDMPESVLVRFTGTMQPGITLRD 611 (938)
T ss_pred ccc-----------cccCCeEEEeecCCCCCcccc---cCCCcHHHHHHHHHhCeehhcCCCEEEEEEecccCCCcCHhH
Confidence 754 66785 689999999987775 558899999999999999999999999999999999999999
Q ss_pred HHHHHH------HHHHh------cCccceEEEEecCcCCCCCcccchhhcccccccCceeeeeeCC-hHHHHHHHh----
Q 003793 161 LVLTVT------QMLRK------HGVVGKFVEFYGEGMGQLPLADRATIANMSPEYGATMGFFPVD-HVTLQYLKL---- 223 (795)
Q Consensus 161 viL~i~------~~l~~------~G~~g~~vEf~G~gv~~Ls~~~R~TI~NMa~E~GA~~~~fp~D-~~t~~yL~~---- 223 (795)
|||+|+ +.|+. .+++||+||| +|+++||+++|||||||++|+||++|+||+| ++|++||+.
T Consensus 612 lIL~Ii~~~i~~G~Ltv~k~gk~~~f~GkilEf--~Gl~~Lsve~R~TL~NMaaE~GAk~gii~~Dde~t~eYL~~n~~~ 689 (938)
T PLN00094 612 LVHAIPYTAIQDGLLTVEKKGKKNVFSGRILEI--EGLPHLKCEQAFELSDASAERSAAGCTIKLDKEPIIEYLNSNVVM 689 (938)
T ss_pred HHHHHHHHhhhccccchhhcCccceEeeEEEEe--CCcccCCHhHHHHHHhHHHHhCccEEEECCChhHHHHHHhhcccc
Confidence 999997 44443 3458999999 7799999999999999999999999999999 478999986
Q ss_pred ------cCCC-----hhhHHHHHHHHHHhhhcccCCCCCCCCccceEEEEECCCc-cceeecCCCCCCccccCCcchhhH
Q 003793 224 ------TGRS-----DETVSMIEEYLRANKMFVDYNEPEQERSYSSYLQLDLADV-EPCISGPKRPHDRVPLKDMKADWH 291 (795)
Q Consensus 224 ------~gr~-----~~~~~~~~~y~~~~~l~~~~~~~D~~a~Y~~vieiDLs~l-eP~VA~P~~P~~~~~v~e~~~~~~ 291 (795)
+|+. +..++.+++|++...+| .+|+||.|+++|+||||+| ||+||+|++|||++||+|+.+
T Consensus 690 ~~~mi~~g~~~~rt~~~ri~~~e~w~~~~~ll----~aD~dA~Y~~vieIDLs~I~EP~VA~P~~PDnv~~lsev~g--- 762 (938)
T PLN00094 690 LKWMIAEGYGDRRTLERRIARMQQWLADPELL----EADPDAEYAAVIEIDMDEIKEPILCAPNDPDDARLLSEVTG--- 762 (938)
T ss_pred hhhhhccCCCchhhHHHHHHHHHHHHhhcccc----cCCCCCceEEEEEEEhHHCCCCeEeCCCChhhceECchhcC---
Confidence 4533 23466788898888877 5899999999999999999 999999999999999999852
Q ss_pred HhhhccccccCCCCCccccccccccccCCCcccccCccEEEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCccCCceeEE
Q 003793 292 ACLENQVGFKGFAVPKQEQDKVAKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLEVKPWVKTS 371 (795)
Q Consensus 292 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IGSCTN~~~~dl~~aA~lLa~~a~~~G~kv~~~V~~~ 371 (795)
. .|+++|||||| ++++|++.||.+| +|+|+++.||++
T Consensus 763 -----------~-------------------------kIDqVFIGSCT-grieDlraAA~IL------kGrkv~~~Vrl~ 799 (938)
T PLN00094 763 -----------D-------------------------KIDEVFIGSCM-TNIGHFRAAGKLL------NDNLSQLPTRLW 799 (938)
T ss_pred -----------C-------------------------ccCeEEEEeCC-CCHHHHHHHHHHH------cCCCCCCCCcEE
Confidence 1 26689999999 7999999999999 999999999999
Q ss_pred EecCcHHHHHHHHHcCcHHHHHhcCcEEeccCCccccCCCCCCChhhhhhcccCceeEEEEeccCCCCCCCCCCccCCce
Q 003793 372 LAPGSGVVTKYLQQSGLQKYLNQQGFHIVGYGCTTCIGNSGDLDESVATAITENDIVAAAVLSGNRNFEGRVHPLTRANY 451 (795)
Q Consensus 372 v~PgS~~V~~~l~~~Gl~~~l~~aG~~i~~~gCg~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~y 451 (795)
|+|||++|+++|+++|++++|.++||+|..||||+|+|+++.+. +|+ ++|||+||||+||||+ .+.+|
T Consensus 800 V~P~Sr~V~~ql~~eG~~~if~~AGA~i~~PGCg~CmG~~g~l~--------~Ge---v~vSTSNRNF~GRmG~-~a~VY 867 (938)
T PLN00094 800 VAPPTKMDEAQLKAEGYYSTFGTVGARTEMPGCSLCMGNQARVA--------EKS---TVVSTSTRNFPNRLGK-GANVY 867 (938)
T ss_pred EeCCCHHHHHHHHHcCcHHHHHhCCCEEcCCccccccCCCCcCC--------CCC---eEEeecCCCCCCCCCC-CccEE
Confidence 99999999999999999999999999999999999999966653 244 3789999999999998 55799
Q ss_pred ecChHHHHHHHhccccc
Q 003793 452 LASPPLVVAYALAGTVD 468 (795)
Q Consensus 452 LaSP~~vaA~AlaG~I~ 468 (795)
|+||++|||+||+|+|+
T Consensus 868 LaSP~~AAASAi~G~It 884 (938)
T PLN00094 868 LASAELAAVAAILGRLP 884 (938)
T ss_pred ecCHHHHHHHHhCCccC
Confidence 99999999999999995
No 34
>cd01580 AcnA_IRP_Swivel Aconitase A swivel domain. This is the major form of the TCA cycle enzyme aconitate hydratase, also known as aconitase and citrate hydro-lyase. It includes bacterial and archaeal aconitase A, and the eukaryotic cytosolic form of aconitase. This group also includes sequences that have been shown to act as an iron-responsive element (IRE) binding protein in animals and may have the same role in other eukaryotes. This is the aconitase-like swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism.
Probab=100.00 E-value=2.4e-64 Score=489.22 Aligned_cols=170 Identities=74% Similarity=1.149 Sum_probs=166.6
Q ss_pred ecCCCCcccccccCCCCCCCChHhhHHHHcCCCccccccccCCCCChhhcccccccchhhhhhhcCCCCCCceeecCCCc
Q 003793 571 NFGDSITTDHISPAGSIHKDSPAAKYLLERGVDRKDFNSYGSRRGNDEVMARGTFANIRIVNKLLNGEVGPKTVHIPTGE 650 (795)
Q Consensus 571 ~~gd~itTD~I~PaG~i~~~s~a~~~L~~~g~~~~~~n~yg~rr~n~evm~rg~F~n~r~~n~~~~~~~g~~t~~~p~~~ 650 (795)
++||+||||||||||+|+++|||++||.++|++++|||+||+||||||||+||||+|+|++|+|+++.+|++|+|+|+|+
T Consensus 1 ~lgD~iTTDHISPaG~I~~~s~ag~yL~~~gv~~~dfnsyg~rRgnhevm~RgtFan~r~~N~~~~~~~g~~t~~~p~g~ 80 (171)
T cd01580 1 LLGDSVTTDHISPAGSIAKDSPAGKYLAERGVKPRDFNSYGSRRGNDEVMMRGTFANIRLRNKLVPGTEGGTTHHPPTGE 80 (171)
T ss_pred CCCCCccccccCCCCCCCCCChHHHHHHHcCCChhhccccccccCCceEeecccccchhhhhcccCCCCCCcEEECCCCc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccHHHHHHHcCCceEEEeCCccCCCCchhhhhhhhhhcCeeEEEecchhHHHhhhhccCcccccccCCccchhhcc
Q 003793 651 KLYVFDAAMRYKAAGHETIVLAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDADTLG 730 (795)
Q Consensus 651 ~~~v~~~a~~y~~~g~~~iiVaG~NfG~GSSRE~Aa~a~~~lGv~aVIA~SFarI~~~Nlin~Gilpl~~~~~~~~~~l~ 730 (795)
.++|||+|++||++|+++|||||+|||||||||||||+++++||+||||+||+|||++||+|||||||+|++++++++|+
T Consensus 81 ~~~i~~aA~~Yk~~g~plIIvaG~nfG~GSSRE~Aa~~~~~lGi~aVIA~SFarI~~~Nli~~Gllpl~~~~~~~~~~l~ 160 (171)
T cd01580 81 VMSIYDAAMRYKEEGVPLVILAGKEYGSGSSRDWAAKGPFLLGVKAVIAESFERIHRSNLVGMGILPLQFPPGENADSLG 160 (171)
T ss_pred EeeHHHHHHHHHHcCCcEEEEccCcccCCCcHHHHHHHHHHhCCCEEEEccHHHHHHhhHhhcCcceEEeCCccCHHhhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCceEEEe
Q 003793 731 LAGHERYTIN 740 (795)
Q Consensus 731 ~~~~~~~~id 740 (795)
+++.|.++|.
T Consensus 161 l~g~e~~~i~ 170 (171)
T cd01580 161 LTGEETYDII 170 (171)
T ss_pred CCCceeEEee
Confidence 9999988874
No 35
>KOG0454 consensus 3-isopropylmalate dehydratase (aconitase superfamily) [Amino acid transport and metabolism]
Probab=100.00 E-value=5.8e-46 Score=399.65 Aligned_cols=402 Identities=23% Similarity=0.296 Sum_probs=262.8
Q ss_pred HHHHHhhhcccCCCCCCCCccceEEEEECCCccceeecCCCCCCccccCCcchhhHHhhhccccccCCCCCccccccccc
Q 003793 236 EYLRANKMFVDYNEPEQERSYSSYLQLDLADVEPCISGPKRPHDRVPLKDMKADWHACLENQVGFKGFAVPKQEQDKVAK 315 (795)
Q Consensus 236 ~y~~~~~l~~~~~~~D~~a~Y~~vieiDLs~leP~VA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 315 (795)
+|-++..+|... .+|+.+.|+.+++|..-++.|.+.|..+||++.|+.--.++-....+ +| -...-+..
T Consensus 13 ~we~avaywktl-~~de~ak~dhe~~i~aidv~pt~twgtspqd~~pitGsvpdp~~vtd--------~i--~a~~~ers 81 (502)
T KOG0454|consen 13 KWESAVAYWKTL-FPDESAKSDHECQIKAIDVKPTSTWGTSPQDSPPITGSVPDPMTVTD--------KI--LARASERS 81 (502)
T ss_pred chhhhhhhhhcc-cCcccccceeeeeccccceeeeeeecCCcccCCCcCCcCCCCcccch--------HH--HHhhhhhc
Confidence 344566677654 68999999999999999999999999999999998764432111100 00 01112235
Q ss_pred cccCCCccccc--CccEEEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCccCCcee-EEEecCcHHHHHHHHHcCcHHHH
Q 003793 316 FSFHGQPAELK--HGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLEVKPWVK-TSLAPGSGVVTKYLQQSGLQKYL 392 (795)
Q Consensus 316 ~~~~g~~~~l~--~g~V~~a~IGSCTN~~~~dl~~aA~lLa~~a~~~G~kv~~~V~-~~v~PgS~~V~~~l~~~Gl~~~l 392 (795)
+.|+|.+.... --.++-+|||||||++.+||+.+|+++ +|.|+.-.+| .+++|||+.|..+++.+||.++|
T Consensus 82 L~ymGl~pnt~v~s~~~dkVfigsctn~riedlr~aAaVv------~g~Kia~n~k~am~vpgsglvkk~aeaegld~if 155 (502)
T KOG0454|consen 82 LVYMGLNPNTNVDSLMTDKVFIGSCTNIRIEDLREAAAVV------DGEKIAVNPKHAMFVPGSGLVKKVAEAEGLDRIF 155 (502)
T ss_pred eeeccCCCCcccceeeecceeccccccccHHHHhhhhhcc------ccceeEecccceEEecCchhhHhHHHHHhhHHHH
Confidence 67888665433 224567999999999999999999999 9999987777 78999999999999999999999
Q ss_pred HhcCcEEeccCCccccCCCCCCChhhhhhcccCceeEEEEeccCCCCCCCCCCccCCceecChHHHHHHHhccccccCCC
Q 003793 393 NQQGFHIVGYGCTTCIGNSGDLDESVATAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVDIDFE 472 (795)
Q Consensus 393 ~~aG~~i~~~gCg~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~vaA~AlaG~I~~d~~ 472 (795)
.++||.|+..||+.|+|++.+.....++| -+|+|||||||+|.+.++ +|+||.+.+|.++.|+-. ++.
T Consensus 156 ~eagF~wreagcs~clgmnpd~l~~yerc----------astsnRnfEgrqGa~srT-hlma~s~qfAagi~~~~~-~~~ 223 (502)
T KOG0454|consen 156 NEAGFYWREAGCSFCLGMNPDGLCHYERC----------ASTSNRNFEGRQGADSRT-HLMAASMQFAAGIGGHDL-GFR 223 (502)
T ss_pred HhhceehhhccccccccCCchhccHHHHh----------hhccCCCccccccccccc-hhhhhhHHhhcccccccc-ccc
Confidence 99999999999999999985554556664 489999999999999886 999999999999999874 111
Q ss_pred CCCCcCCCCCCccccccCCCChHHHHHHhhccCCcchhhhccccccC-CCcccccccCCCCCccccCC-CCc--cccCCC
Q 003793 473 KEPIGTGKDGKGVYFKDIWPSNEEIAEVVQSSVLPDMFKSTYEAITK-GNPMWNQLSVPTSTLYSWDP-NST--YIHEPP 548 (795)
Q Consensus 473 ~~plg~~~~G~~v~l~di~P~~~ei~~~~~~~v~p~~~~~~y~~~~~-~~~~w~~l~~~~~~~~~w~~-~st--~i~~pp 548 (795)
.-+ |+... -..|+..-.-+-....+.++ +..+.. .+..-. .+ +.+.-++ .|+ .+..++
T Consensus 224 ~~~------~k~~~--~~~Ps~~l~~~g~s~sv~~~-----~~li~~ia~ds~t--~i---~~~at~e~~s~~sSl~m~~ 285 (502)
T KOG0454|consen 224 EFT------GKDSL--KVSPSPFLTLKGESPSVLPA-----KDLIVSIATDSST--DI---PRVATMEFSSTTSSLGMET 285 (502)
T ss_pred ccc------ccccc--cCCCCceEEeCCCCcccccc-----ccchhhhhccccc--cc---cceecccCCCccccccCcc
Confidence 100 00000 00111100000000000000 000000 000000 00 1111110 111 122222
Q ss_pred CCCCCCCCCCCCCCCccceEEeecCCCCcccccccCCCCCCCChHhhHHHHcCCCccccccccCCCCChhhcccccccch
Q 003793 549 YFKNMTMEPPGPHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLLERGVDRKDFNSYGSRRGNDEVMARGTFANI 628 (795)
Q Consensus 549 ~f~~~~~~~~~~~~i~~a~vL~~~gd~itTD~I~PaG~i~~~s~a~~~L~~~g~~~~~~n~yg~rr~n~evm~rg~F~n~ 628 (795)
|. .+. ..+.||||||+|+| ++||+. +.+... .+..|..+
T Consensus 286 F~-----------tLc-----~vv~dNiDTD~IIP----------~qfltl--i~~~~~-------------~~~~f~~~ 324 (502)
T KOG0454|consen 286 FH-----------TLC-----GVVADNIDTDQIIP----------AQFLTL--IPSTGL-------------ILSCFYEV 324 (502)
T ss_pred ee-----------eee-----hhhhhhCCcCcccC----------hhhhcc--cccchh-------------hhhhhhhh
Confidence 21 122 24559999999999 579986 322222 45667776
Q ss_pred hhhhhhcCCCCCCceeecCCCcccccccHHHHHHHcCCceEEEeCCccCCCCchhhhhhhhhhcCeeEEEecchhHHHhh
Q 003793 629 RIVNKLLNGEVGPKTVHIPTGEKLYVFDAAMRYKAAGHETIVLAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRS 708 (795)
Q Consensus 629 r~~n~~~~~~~g~~t~~~p~~~~~~v~~~a~~y~~~g~~~iiVaG~NfG~GSSRE~Aa~a~~~lGv~aVIA~SFarI~~~ 708 (795)
++. |.... + ...||++. +.|+.. .|+|+|.|||||||||||+|++.+.|+++|||+||+|||++
T Consensus 325 ~~d-----g~~k~---~----~~dFv~~v-E~~~~~---siii~~DNFGCGSSREHAPv~L~~~GakaivA~Sya~IFfr 388 (502)
T KOG0454|consen 325 ALD-----GLPKS---F----VTDFVLPV-EPLRKY---SIIIGGDNFGCGSSREHAPVCLGAAGAKAIVAPSYARIFFR 388 (502)
T ss_pred eec-----CCchh---h----ccceeccc-ccccee---EEEeccCCcccccccccCcchhhhcccceecchhHHHHHHH
Confidence 652 11011 0 11244444 344443 79999999999999999999999999999999999999999
Q ss_pred hhccCcccccccCCccchhhcccCCCceEEEecCC
Q 003793 709 NLVGMGIIPLCFKPGEDADTLGLAGHERYTINLPN 743 (795)
Q Consensus 709 Nlin~Gilpl~~~~~~~~~~l~~~~~~~~~idl~~ 743 (795)
|++.+|.+|..-+...-.+.. ..++..++.+..
T Consensus 389 N~~atG~l~~~~s~~~v~de~--~~~dv~~v~l~~ 421 (502)
T KOG0454|consen 389 NSVATGELPPLPSEVRVCDEC--VTGDVYTVELSV 421 (502)
T ss_pred hHHhcCCccCCCceeeecccc--eecceeeEEccc
Confidence 999999998765433222221 234555555543
No 36
>COG1049 AcnB Aconitase B [Energy production and conversion]
Probab=100.00 E-value=2.2e-45 Score=406.05 Aligned_cols=329 Identities=25% Similarity=0.437 Sum_probs=277.7
Q ss_pred CCCCceecccccccccceeecCCCccccCeE-EecCCCCCccCccccccccccHHHHHHHHccCceeeeCCcEEEEEEec
Q 003793 72 PPGSGIVHQVNLEYLGRVVFNTDGILYPDSV-VGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLTG 150 (795)
Q Consensus 72 ~pg~GI~Hqv~~E~~a~~v~~~~G~~~P~~i-vGtDSHT~~~GalG~la~GvGg~e~~~~m~g~~~~~~vPevv~V~l~G 150 (795)
.||.||+|.+. +.+++||+| .|+||||.+.=|+ +|+.|+-=++.+.+++.+.|.+||+|.|+++|
T Consensus 464 rpgdGVIHswL-----------NrmllpDtvgtGGDSHTRfpiGi---sFpAgSGlVAfAaatGvmpldmPeSVlVrFkG 529 (852)
T COG1049 464 RPGDGVIHSWL-----------NRMLLPDTVGTGGDSHTRFPIGI---SFPAGSGLVAFAAATGVMPLDMPESVLVRFKG 529 (852)
T ss_pred CCCCccHHHHH-----------HhccCCcceecCCcccccccccc---eecCCCchhhhhHhcCcccCCCCceEEEEecc
Confidence 47899999985 568899975 8999999998554 67888888899999999999999999999999
Q ss_pred cCCCCCChhhHHHHHHHH-HHh-----------cCccceEEEEecCcCCCCCcccchhhcccccccCceeeeeeC-ChHH
Q 003793 151 KLRDGVTATDLVLTVTQM-LRK-----------HGVVGKFVEFYGEGMGQLPLADRATIANMSPEYGATMGFFPV-DHVT 217 (795)
Q Consensus 151 ~l~~gVtakDviL~i~~~-l~~-----------~G~~g~~vEf~G~gv~~Ls~~~R~TI~NMa~E~GA~~~~fp~-D~~t 217 (795)
+++||+|-+||+.+|--. +.+ +-..|+++|. +|+.+|.+++-++++..++|..|..+.+-. +|..
T Consensus 530 ~mQPgitlRDlV~Aip~yaikQglltv~k~~k~NiFsGRIlEi--eglp~LkveQAFeltDasAErsaa~ctikl~~e~i 607 (852)
T COG1049 530 EMQPGITLRDLVHAIPYYAIKQGLLTVEKKGKKNIFSGRILEI--EGLPDLKVEQAFELTDASAERSAAGCTIKLNKEPI 607 (852)
T ss_pred ccCCCcCHHHHHhhhHHHHHHhhheeccccCccceecceeEEe--ccCcccchhhheeccchhhhhhhccceEecCchhH
Confidence 999999999999887422 221 1246999999 779999999999999999999999888766 5556
Q ss_pred HHHHHhc----------CCCh-----hhHHHHHHHHHHhhhcccCCCCCCCCccceEEEEECCCc-cceeecCCCCCCcc
Q 003793 218 LQYLKLT----------GRSD-----ETVSMIEEYLRANKMFVDYNEPEQERSYSSYLQLDLADV-EPCISGPKRPHDRV 281 (795)
Q Consensus 218 ~~yL~~~----------gr~~-----~~~~~~~~y~~~~~l~~~~~~~D~~a~Y~~vieiDLs~l-eP~VA~P~~P~~~~ 281 (795)
.+||+.. |..+ ..++..++|+....|+ .+|.||+|..+|+|||+.| ||++|+|.+||++.
T Consensus 608 iEyL~sni~l~k~MIa~Gy~d~rTL~rri~~me~wla~p~ll----e~D~dAeYaavIeidL~~IkEPila~PNdpDd~r 683 (852)
T COG1049 608 IEYLKSNIVLLKWMIAEGYGDARTLERRIDKMEAWLANPELL----EADADAEYAAVIEIDLADIKEPILAAPNDPDDVR 683 (852)
T ss_pred HHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHhhcCcccc----CCCCCCceeEEEEeeHHHcCCCeecCCCCchHhh
Confidence 7999754 3332 3467788999988887 6899999999999999999 89999999999999
Q ss_pred ccCCcchhhHHhhhccccccCCCCCccccccccccccCCCcccccCccEEEEEEecCCCCCCHHHHHHHHHHHHHHHhcC
Q 003793 282 PLKDMKADWHACLENQVGFKGFAVPKQEQDKVAKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELG 361 (795)
Q Consensus 282 ~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IGSCTN~~~~dl~~aA~lLa~~a~~~G 361 (795)
.+|++..+ .|+-+|||||... .-+++++|++| ++
T Consensus 684 ~lse~~~~---------------------------------------~idevFiGSCMtn-iGh~ra~~klL------~~ 717 (852)
T COG1049 684 LLSEVAGD---------------------------------------KIDEVFIGSCMTN-IGHFRAAGKLL------EN 717 (852)
T ss_pred HhHHhcCC---------------------------------------ccceeeeehhhcc-chhHHHHHHHH------Hh
Confidence 99987521 2567899999764 56899999998 55
Q ss_pred CccCCceeEEEecCcHHHHHHHHHcCcHHHHHhcCcEEeccCCccccCCCCCCChhhhhhcccCceeEEEEeccCCCCCC
Q 003793 362 LEVKPWVKTSLAPGSGVVTKYLQQSGLQKYLNQQGFHIVGYGCTTCIGNSGDLDESVATAITENDIVAAAVLSGNRNFEG 441 (795)
Q Consensus 362 ~kv~~~V~~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~i~~~gCg~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~G 441 (795)
.+-.-..|++|+|.++...++|.++|++.+|-++|+++.-|||+.|+||...+ ++|.. .+||++|||++
T Consensus 718 ~~~~~~~rLwvapPTkmd~~qL~~EG~y~ifg~agar~E~PGCsLCMGNQarv--------~dgat---V~sTSTRnF~n 786 (852)
T COG1049 718 AKGELPTRLWVAPPTKMDAAQLTEEGYYSIFGKAGARIEMPGCSLCMGNQARV--------ADGAT---VFSTSTRNFPN 786 (852)
T ss_pred cccCCCcceEecCCccccHHHHhhcchHHHHhhccceecCCCcccccccHhhh--------ccCCE---EEeeccccCCc
Confidence 44222378999999999999999999999999999999999999999996443 34543 47999999999
Q ss_pred CCCCccCCceecChHHHHHHHhccccccCCCCCCCcCCCCCCccccccCCCChHHHHHHhh
Q 003793 442 RVHPLTRANYLASPPLVVAYALAGTVDIDFEKEPIGTGKDGKGVYFKDIWPSNEEIAEVVQ 502 (795)
Q Consensus 442 R~g~~~~~~yLaSP~~vaA~AlaG~I~~d~~~~plg~~~~G~~v~l~di~P~~~ei~~~~~ 502 (795)
|+|.... +||+|.+++|.+|+-|+| |+.+|..+++.
T Consensus 787 Rlg~~a~-vyL~Saelaav~aiLGki------------------------Pt~eEY~~~v~ 822 (852)
T COG1049 787 RLGKGAN-VYLASAELAAVCAILGKI------------------------PTVEEYMAYVA 822 (852)
T ss_pred ccccccc-eeeeccHHHHHHHHHcCC------------------------CCHHHHHHHHH
Confidence 9999764 899999999999999998 78888877765
No 37
>cd01578 AcnA_Mitochon_Swivel Mitochondrial aconitase A swivel domain. Aconitase (also known as aconitate hydratase and citrate hydro-lyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. This is the aconitase swivel domain, which undergoes swivelling conformational change in the enzyme mechanism. In eukaryotes two isozymes of aconitase are known to exist: one found in the mitochondrial matrix and the other found in the cytoplasm. This is the mitochondrial form. The mitochondrial product is coded by a nuclear gene. Most members of this subfamily are mitochondrial but there are some bacterial members.
Probab=100.00 E-value=5e-40 Score=315.52 Aligned_cols=141 Identities=37% Similarity=0.504 Sum_probs=123.8
Q ss_pred ecCCCCcccccccCCCCCCCChHhhHHHHcCCCccccccccCCCCChhhcccccccchhhhhhhcCCCCCCceeecCCCc
Q 003793 571 NFGDSITTDHISPAGSIHKDSPAAKYLLERGVDRKDFNSYGSRRGNDEVMARGTFANIRIVNKLLNGEVGPKTVHIPTGE 650 (795)
Q Consensus 571 ~~gd~itTD~I~PaG~i~~~s~a~~~L~~~g~~~~~~n~yg~rr~n~evm~rg~F~n~r~~n~~~~~~~g~~t~~~p~~~ 650 (795)
|..+|||||||||||+ ||++ |||-+.+.+.+|. +..|.+. ++ -...++.++|+
T Consensus 1 k~~g~~tTDhI~pag~---------~l~~--------------R~~l~~is~~~~~--~a~n~~~-~~-~~~~~~~~~g~ 53 (149)
T cd01578 1 KAKGKCTTDHISAAGP---------WLKY--------------RGHLDNISNNLLI--GAINAEN-GK-ANSVKNQVTGE 53 (149)
T ss_pred CCCCccCcccccCCCc---------cccc--------------ccCHHHHHHHHhh--hhhhhhc-cc-cccccccCCCc
Confidence 4578999999999984 7886 6788888888885 4567664 33 34577889999
Q ss_pred ccccccHHHHHHHcCCceEEEeCCccCCCCchhhhhhhhhhcCeeEEEecchhHHHhhhhccCcccccccCCccchhhcc
Q 003793 651 KLYVFDAAMRYKAAGHETIVLAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDADTLG 730 (795)
Q Consensus 651 ~~~v~~~a~~y~~~g~~~iiVaG~NfG~GSSRE~Aa~a~~~lGv~aVIA~SFarI~~~Nlin~Gilpl~~~~~~~~~~l~ 730 (795)
.++++++|++||+.|.++|||||+|||||||||||||+|++|||+||||+||+|||++||+|+|||||+|+++++|+.+
T Consensus 54 ~~~~~~~A~~yk~~g~~~iIVaG~nyG~GSSREhAa~a~~~lGv~aVIA~SFarI~~~Nlin~Gilpl~f~~~~~~~~i- 132 (149)
T cd01578 54 YGPVPDTARDYKAHGIKWVVIGDENYGEGSSREHAALEPRHLGGRAIITKSFARIHETNLKKQGLLPLTFADPADYDKI- 132 (149)
T ss_pred ccchHHHHHHHHHcCCCeEEEccCccCCCCchHHHHHHHHHhCCCEEEEecHHHHHHHHHHhcCCceEEecChHHHHhc-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998888875
Q ss_pred cCCCceEEEe
Q 003793 731 LAGHERYTIN 740 (795)
Q Consensus 731 ~~~~~~~~id 740 (795)
.++++++|.
T Consensus 133 -~~gd~i~i~ 141 (149)
T cd01578 133 -HPDDKVDIL 141 (149)
T ss_pred -CCCCEEEEe
Confidence 567888874
No 38
>COG0066 LeuD 3-isopropylmalate dehydratase small subunit [Amino acid transport and metabolism]
Probab=100.00 E-value=8.8e-38 Score=309.17 Aligned_cols=166 Identities=25% Similarity=0.445 Sum_probs=130.5
Q ss_pred EEeecC-CCCcccccccCCCCCCCChHhhHHHHcCCCccccccccCCCCChhhcccccccchhhhhhhcCCCCCCceeec
Q 003793 568 CLLNFG-DSITTDHISPAGSIHKDSPAAKYLLERGVDRKDFNSYGSRRGNDEVMARGTFANIRIVNKLLNGEVGPKTVHI 646 (795)
Q Consensus 568 vL~~~g-d~itTD~I~PaG~i~~~s~a~~~L~~~g~~~~~~n~yg~rr~n~evm~rg~F~n~r~~n~~~~~~~g~~t~~~ 646 (795)
...++| ||||||+|+| ++||+. +++.+| .++.|.+||+.. |
T Consensus 10 ~~~pl~~dnIDTD~IIP----------~~fLk~--i~~~gl-------------~k~~f~~~r~~~--------P----- 51 (191)
T COG0066 10 RVWPLGRDNVDTDQIIP----------KRFLKT--ITRTGL-------------GKHLFEDWRYLD--------P----- 51 (191)
T ss_pred eEEecCCCCCccccCcc----------HHHhcc--cCHhhh-------------hhcccccccccC--------c-----
Confidence 346777 9999999999 799995 677777 577899998631 1
Q ss_pred CCCcccccccHHHHHHHcCCceEEEeCCccCCCCchhhhhhhhhhcCeeEEEecchhHHHhhhhccCcccccccCCccch
Q 003793 647 PTGEKLYVFDAAMRYKAAGHETIVLAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDA 726 (795)
Q Consensus 647 p~~~~~~v~~~a~~y~~~g~~~iiVaG~NfG~GSSRE~Aa~a~~~lGv~aVIA~SFarI~~~Nlin~Gilpl~~~~~~~~ 726 (795)
.|+.+. ++|+. ++|||||+|||||||||||+||++.+||+||||+||||||++||+|+||||+...+++-.
T Consensus 52 -----dF~~n~-~~yq~---g~IlVag~NFGcGSSREHApwALk~~Gi~~VIA~SFAdIFy~Na~nnG~Lpi~~~~~~~~ 122 (191)
T COG0066 52 -----DFVLNV-PPYQG---GDILVAGENFGCGSSREHAPWALKDYGIRAVIAPSFADIFYRNAINNGLLPIVLAEEDVT 122 (191)
T ss_pred -----chhhcC-CccCC---ccEEEecCCCCCCccHHHHHHHHHHcCeeEEEeccHHHHHhhhhhhcCcCceecChHHHH
Confidence 134444 56765 489999999999999999999999999999999999999999999999999998765322
Q ss_pred hhcccCCCceEEEecCCccccCCCCceEEEEcCCCeEEEEEecCCCHHHHHHHHhc----ChHHHHHHHhh
Q 003793 727 DTLGLAGHERYTINLPNKVSEIRPGQDITVTTDTGKSFTCTVRFDTEVELAYFDHG----GILPYVIRNLI 793 (795)
Q Consensus 727 ~~l~~~~~~~~~idl~~~~~~~~~g~~v~v~~~~g~~~~~~~~~~~~~e~~~~~aG----Gll~~v~~~~~ 793 (795)
+.+....+++++|||+.+ +|+..++.++.+.+ +++.++++.+| |++.|.++++.
T Consensus 123 ~l~~~~~g~~i~VDL~~~----------~v~~~~~~~~~f~i---~~f~~~~L~~GlD~iGlt~~~~~~i~ 180 (191)
T COG0066 123 ELFEDVPGDEVTVDLETG----------EVTNPTGGEEPFEI---DDFRREILLNGLDDIGLTLQHKKEID 180 (191)
T ss_pred HHHHhCCCCEEEEEcCCC----------eEEeCCCCEEEccC---CHHHHHHHHcCCcccchHHHHHHHHh
Confidence 323223578999999874 34444443444433 79999999999 99999998763
No 39
>PRK00439 leuD 3-isopropylmalate dehydratase small subunit; Reviewed
Probab=100.00 E-value=1.5e-37 Score=306.83 Aligned_cols=156 Identities=31% Similarity=0.489 Sum_probs=126.7
Q ss_pred EeecCCCCcccccccCCCCCCCChHhhHHHHcCCCccccccccCCCCChhhcccccccchhhhhhhcCCCCCCceeecCC
Q 003793 569 LLNFGDSITTDHISPAGSIHKDSPAAKYLLERGVDRKDFNSYGSRRGNDEVMARGTFANIRIVNKLLNGEVGPKTVHIPT 648 (795)
Q Consensus 569 L~~~gd~itTD~I~PaG~i~~~s~a~~~L~~~g~~~~~~n~yg~rr~n~evm~rg~F~n~r~~n~~~~~~~g~~t~~~p~ 648 (795)
+.++|||||||+|+| ++||+. . +.+.|.++.|.++|-
T Consensus 4 v~~~gdnIdTD~I~P----------~~~l~~--~-------------~~~~l~~~~f~~~~p------------------ 40 (163)
T PRK00439 4 VWKFGDNIDTDVIIP----------ARYLNT--S-------------DPQELAKHCMEDLDP------------------ 40 (163)
T ss_pred EEEeCCCCchhhCCh----------HHHhCC--C-------------CHHHHHHHHhccCCc------------------
Confidence 578999999999999 689974 2 446678888888751
Q ss_pred CcccccccHHHHHHHcCCceEEEeCCccCCCCchhhhhhhhhhcCeeEEEecchhHHHhhhhccCcccccccCCccchhh
Q 003793 649 GEKLYVFDAAMRYKAAGHETIVLAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDADT 728 (795)
Q Consensus 649 ~~~~~v~~~a~~y~~~g~~~iiVaG~NfG~GSSRE~Aa~a~~~lGv~aVIA~SFarI~~~Nlin~Gilpl~~~~~~~~~~ 728 (795)
+++.+.+ .+.|||||+|||||||||||+|+++++||+||||+||+|||++||+|+||||+++++ +++.
T Consensus 41 -------~f~~~~~---~g~IiVaG~NfG~GSSRE~A~~al~~~Gi~aVIA~SFa~If~rN~~n~Gll~i~~~~--~~~~ 108 (163)
T PRK00439 41 -------EFAKKVK---PGDIIVAGKNFGCGSSREHAPIALKAAGVSAVIAKSFARIFYRNAINIGLPVLECDE--AVDK 108 (163)
T ss_pred -------chHhhcC---CceEEEeCCcccCCccHHHHHHHHHHHCCCeEEEehHHHHHHhhHHhcCCCeEEchh--HHHh
Confidence 1222333 247999999999999999999999999999999999999999999999999999964 3665
Q ss_pred cccCCCceEEEecCCccccCCCCceEEEEcCCCeEEEEEecCCCHHHHHHHHhcChHHHHHHHh
Q 003793 729 LGLAGHERYTINLPNKVSEIRPGQDITVTTDTGKSFTCTVRFDTEVELAYFDHGGILPYVIRNL 792 (795)
Q Consensus 729 l~~~~~~~~~idl~~~~~~~~~g~~v~v~~~~g~~~~~~~~~~~~~e~~~~~aGGll~~v~~~~ 792 (795)
+ ..+++++||+.++ +|.. ..+|+++.+.. + ++.+++++++||++||++++.
T Consensus 109 l--~~gd~i~idl~~~--------~v~~-~~~g~~~~f~~-l-~~~~~~il~aGGl~~~~~~~~ 159 (163)
T PRK00439 109 I--EDGDEVEVDLETG--------VITN-LTTGEEYKFKP-I-PEFMLEILKAGGLIEYLKKKG 159 (163)
T ss_pred c--CCCCEEEEECCCC--------EEEe-CCCCeEEEEee-C-CHHHHHHHHcCCHHHHHHHhc
Confidence 4 5688999998763 3332 23477888863 3 889999999999999999885
No 40
>TIGR02084 leud 3-isopropylmalate dehydratase, small subunit. Several pairs of archaeal proteins resemble the leuC and leuD pair in length and sequence but even more closely resemble the respective domains of homoaconitase, and their identity is uncertain. The members of the seed for this model are those sequences which are gene clustered with other genes involved in leucine biosynthesis and include some archaea.
Probab=100.00 E-value=2.2e-37 Score=302.99 Aligned_cols=154 Identities=31% Similarity=0.528 Sum_probs=122.5
Q ss_pred EeecCCCCcccccccCCCCCCCChHhhHHHHcCCCccccccccCCCCChhhcccccccchhhhhhhcCCCCCCceeecCC
Q 003793 569 LLNFGDSITTDHISPAGSIHKDSPAAKYLLERGVDRKDFNSYGSRRGNDEVMARGTFANIRIVNKLLNGEVGPKTVHIPT 648 (795)
Q Consensus 569 L~~~gd~itTD~I~PaG~i~~~s~a~~~L~~~g~~~~~~n~yg~rr~n~evm~rg~F~n~r~~n~~~~~~~g~~t~~~p~ 648 (795)
+.++|||||||||+| ++||+. .+.+.|.++.|.++|-
T Consensus 3 v~~~gdnIdTD~I~P----------~~~l~~---------------~~~~~l~~~~f~~~~p------------------ 39 (156)
T TIGR02084 3 VHKYGDNVDTDVIIP----------ARYLNT---------------SDPKELAKHCMEDLDK------------------ 39 (156)
T ss_pred eEEcCCCccHhhccH----------HHHcCc---------------CCHHHHHhhhhccCCh------------------
Confidence 478999999999999 689863 2456678888887651
Q ss_pred CcccccccHHHHHHHcCCceEEEeCCccCCCCchhhhhhhhhhcCeeEEEecchhHHHhhhhccCcccccccCCccchhh
Q 003793 649 GEKLYVFDAAMRYKAAGHETIVLAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDADT 728 (795)
Q Consensus 649 ~~~~~v~~~a~~y~~~g~~~iiVaG~NfG~GSSRE~Aa~a~~~lGv~aVIA~SFarI~~~Nlin~Gilpl~~~~~~~~~~ 728 (795)
+++++++. ++|||||+|||||||||||+|+++++||+||||+||+|||+|||+|+|| |+... ++.++.
T Consensus 40 -------~f~~~~~~---g~iiVaG~NFG~GSSRE~A~~al~~~Gi~aVIA~SFarIf~rN~iN~GL-p~~~~-~~~~~~ 107 (156)
T TIGR02084 40 -------DFVKKVKE---GDIIVAGENFGCGSSREHAPIAIKASGISCVIAKSFARIFYRNAINIGL-PIVES-EEAVDE 107 (156)
T ss_pred -------hHHhhcCC---CCEEEccCcccCCCcHHHHHHHHHHhCCCEEEEehHHHHHHhhhhhCCC-CeecC-HHHHHH
Confidence 12344432 4799999999999999999999999999999999999999999999997 55433 455666
Q ss_pred cccCCCceEEEecCCccccCCCCceEEEEcCCCeEEEEEecCCCHHHHHHHHhcChHHHHHH
Q 003793 729 LGLAGHERYTINLPNKVSEIRPGQDITVTTDTGKSFTCTVRFDTEVELAYFDHGGILPYVIR 790 (795)
Q Consensus 729 l~~~~~~~~~idl~~~~~~~~~g~~v~v~~~~g~~~~~~~~~~~~~e~~~~~aGGll~~v~~ 790 (795)
+ ..+++++||+.++ +|+ +..+|++|.+.. + ++.+++++++||+++|+++
T Consensus 108 l--~~gd~i~idl~~~--------~v~-~~~~g~~~~~~~-~-~~~~~~il~~GGl~~~~~~ 156 (156)
T TIGR02084 108 I--EEGDEVEVDLEKG--------IIK-NLTKGKEYKATP-F-PEFLQKIMKAGGLLNYVKK 156 (156)
T ss_pred h--CCCCEEEEECCCC--------EEE-EecCCEEEEeec-C-CHHHHHHHHcCCHHHHhhC
Confidence 4 4678999998763 222 234578888884 3 7899999999999999874
No 41
>PRK14023 homoaconitate hydratase small subunit; Provisional
Probab=100.00 E-value=3.1e-37 Score=304.92 Aligned_cols=154 Identities=33% Similarity=0.526 Sum_probs=125.4
Q ss_pred EeecCCCCcccccccCCCCCCCChHhhHHHHcCCCccccccccCCCCChhhcccccccchhhhhhhcCCCCCCceeecCC
Q 003793 569 LLNFGDSITTDHISPAGSIHKDSPAAKYLLERGVDRKDFNSYGSRRGNDEVMARGTFANIRIVNKLLNGEVGPKTVHIPT 648 (795)
Q Consensus 569 L~~~gd~itTD~I~PaG~i~~~s~a~~~L~~~g~~~~~~n~yg~rr~n~evm~rg~F~n~r~~n~~~~~~~g~~t~~~p~ 648 (795)
+.++|||||||+|+| ++||+.. .+.+.|.++.|.++|-
T Consensus 4 v~~~gdnIdTD~IiP----------a~~l~~~--------------~~~~~l~~~~f~~~~p------------------ 41 (166)
T PRK14023 4 VWKFGDNINTDDILP----------GKYAPFM--------------VGEDRFHNYAFAHLRP------------------ 41 (166)
T ss_pred eEEcCCCcchhhcch----------HHHhccC--------------CCHHHHHhhhccCCCh------------------
Confidence 478999999999999 6999751 2446677888876541
Q ss_pred CcccccccHHHHHHHcCCceEEEeCCccCCCCchhhhhhhhhhcCeeEEEecchhHHHhhhhccCcccccccCCccchhh
Q 003793 649 GEKLYVFDAAMRYKAAGHETIVLAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDADT 728 (795)
Q Consensus 649 ~~~~~v~~~a~~y~~~g~~~iiVaG~NfG~GSSRE~Aa~a~~~lGv~aVIA~SFarI~~~Nlin~Gilpl~~~~~~~~~~ 728 (795)
+++++|+. ++|||||+|||||||||||+|+++++||+||||+||+|||++||+|+||||++. +++++.
T Consensus 42 -------~f~~~~~~---g~IIVaG~NFG~GSSREhA~~al~~~Gi~aVIA~SFa~If~rN~~n~Gll~~~~--~~~~~~ 109 (166)
T PRK14023 42 -------EFASTVRP---GDILVAGRNFGLGSSREYAPEALKMLGIGAIIAKSYARIFYRNLVNLGIPPFES--EEVVDA 109 (166)
T ss_pred -------hhHhhcCC---CCEEEccCcccCCccHHHHHHHHHHHCCCEEEEehHHHHHHhhhhhcCCCccCC--HHHHHH
Confidence 13345553 479999999999999999999999999999999999999999999999999874 345666
Q ss_pred cccCCCceEEEecCCccccCCCCceEEEEcCCCeEEEEEecCCCHHHHHHHHhcChHHHHHHH
Q 003793 729 LGLAGHERYTINLPNKVSEIRPGQDITVTTDTGKSFTCTVRFDTEVELAYFDHGGILPYVIRN 791 (795)
Q Consensus 729 l~~~~~~~~~idl~~~~~~~~~g~~v~v~~~~g~~~~~~~~~~~~~e~~~~~aGGll~~v~~~ 791 (795)
+ ..+++++||+.++ +++. +|+++.+.+ .++.+++++++|||++|++++
T Consensus 110 l--~~gd~i~vDl~~~----------~v~~-~g~~~~~~~--~~~~~~~il~aGGl~~~~~~~ 157 (166)
T PRK14023 110 L--EDGDEVELDLETG----------VLTR-GGETFQLRP--PPEFLLEALKEGSILEYYRKH 157 (166)
T ss_pred h--CCCCEEEEECCCC----------EEEE-CCEEEEEee--CCHHHHHHHHcCCHHHHHHHh
Confidence 4 4678899998863 2332 467788876 488999999999999999987
No 42
>TIGR02087 LEUD_arch 3-isopropylmalate dehydratase, small subunit. This subfamily is most closely related to the 3-isopropylmalate dehydratase, small subunits which form TIGR00171. This subfamily includes the members of TIGR02084 which are gene clustered with other genes of leucine biosynthesis. The rest of the subfamily includes mainly archaeal species which exhibit two hits to this model. In these cases it is possible that one or the other of the hits does not have a 3-isopropylmalate dehydratase activity but rather one of the other related aconitase-like activities.
Probab=100.00 E-value=2.3e-37 Score=302.40 Aligned_cols=152 Identities=28% Similarity=0.504 Sum_probs=121.7
Q ss_pred EeecCCCCcccccccCCCCCCCChHhhHHHHcCCCccccccccCCCCChhhcccccccchhhhhhhcCCCCCCceeecCC
Q 003793 569 LLNFGDSITTDHISPAGSIHKDSPAAKYLLERGVDRKDFNSYGSRRGNDEVMARGTFANIRIVNKLLNGEVGPKTVHIPT 648 (795)
Q Consensus 569 L~~~gd~itTD~I~PaG~i~~~s~a~~~L~~~g~~~~~~n~yg~rr~n~evm~rg~F~n~r~~n~~~~~~~g~~t~~~p~ 648 (795)
+.++|||||||||+| ++||+. + +.|.|.++.|.++| +
T Consensus 3 v~~~gdnIdTD~IiP----------~~~l~~--~-------------~~~~l~~~~f~~~~------p------------ 39 (154)
T TIGR02087 3 VWKFGDDIDTDEIIP----------GRYLRT--T-------------DPDELASHAMEGID------P------------ 39 (154)
T ss_pred eEEcCCCcchhhCcH----------HHHhCc--C-------------CHHHHHhhccCcCC------c------------
Confidence 368999999999999 699964 2 44567788888765 1
Q ss_pred CcccccccHHHHHHHcCCceEEEeCCccCCCCchhhhhhhhhhcCeeEEEecchhHHHhhhhccCcccccccCCccchhh
Q 003793 649 GEKLYVFDAAMRYKAAGHETIVLAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDADT 728 (795)
Q Consensus 649 ~~~~~v~~~a~~y~~~g~~~iiVaG~NfG~GSSRE~Aa~a~~~lGv~aVIA~SFarI~~~Nlin~Gilpl~~~~~~~~~~ 728 (795)
+++.+.+. ++|||||+|||||||||||+|+++.+||+||||+||+|||+|||+|+||||+++++ +.
T Consensus 40 -------~f~~~~~~---g~iiVaG~NFG~GSSRE~A~~al~~~Gi~aVIA~SFa~If~rN~in~Glp~i~~~~----~~ 105 (154)
T TIGR02087 40 -------EFAKKVRP---GDVIVAGKNFGCGSSREQAALALKAAGIAAVIAESFARIFYRNAINIGLPLIEAKT----EG 105 (154)
T ss_pred -------hhhhcCCC---CcEEEcCCcccCCccHHHHHHHHHHhCCCEEEeehHHHHHHhhhhhcCCCcEecCH----HH
Confidence 12222222 47999999999999999999999999999999999999999999999998887764 22
Q ss_pred cccCCCceEEEecCCccccCCCCceEEEEcCCCeEEEEEecCCCHHHHHHHHhcChHHHHHHH
Q 003793 729 LGLAGHERYTINLPNKVSEIRPGQDITVTTDTGKSFTCTVRFDTEVELAYFDHGGILPYVIRN 791 (795)
Q Consensus 729 l~~~~~~~~~idl~~~~~~~~~g~~v~v~~~~g~~~~~~~~~~~~~e~~~~~aGGll~~v~~~ 791 (795)
+..+++++||+.++ +|+ ..+|+++.+.. + ++.+++++++||++||++++
T Consensus 106 --i~~gd~i~vdl~~~--------~v~--~~~g~~~~~~~-l-~~~~~~i~~aGGl~~~~~~~ 154 (154)
T TIGR02087 106 --IKDGDEVTVDLETG--------EIR--VNGNEEYKGEP-L-PDFLLEILREGGLLEYLKKR 154 (154)
T ss_pred --CCCCCEEEEECCCC--------EEE--ECCCeEEEEeC-C-CHHHHHHHHcCCHHHHHhcC
Confidence 34678899998763 333 34567787753 3 89999999999999999874
No 43
>PLN00072 3-isopropylmalate isomerase/dehydratase small subunit; Provisional
Probab=100.00 E-value=2e-35 Score=305.01 Aligned_cols=171 Identities=29% Similarity=0.393 Sum_probs=124.8
Q ss_pred cceEEeecCCCCcccccccCCCCCCCChHhhHHHHcCCCccccccccCCCCChhhcccccccchhhhhhhcCCCCCCcee
Q 003793 565 DAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLLERGVDRKDFNSYGSRRGNDEVMARGTFANIRIVNKLLNGEVGPKTV 644 (795)
Q Consensus 565 ~a~vL~~~gd~itTD~I~PaG~i~~~s~a~~~L~~~g~~~~~~n~yg~rr~n~evm~rg~F~n~r~~n~~~~~~~g~~t~ 644 (795)
..|+ .++|||||||||+| ++||+..... ..+.+.|.++.|.+++- +. ..+
T Consensus 70 ~Grv-~k~gDNIdTD~IiP----------a~~l~~~~sn----------~~~~~~l~~~~F~~l~~-~~--------~~r 119 (246)
T PLN00072 70 HGLC-FVVGDNIDTDQIIP----------AEYLTLVPSK----------PDEYEKLGSYALIGLPA-FY--------KTR 119 (246)
T ss_pred EEeE-EEeCCCcchhhccc----------HHHhcccccc----------CCCHHHHHHhhhccCCc-ch--------hhc
Confidence 4566 69999999999999 6899752100 01246677888876540 00 001
Q ss_pred ecCCCcccccccHHHHHHHcCCceEEEeCCccCCCCchhhhhhhhhhcCeeEEEecchhHHHhhhhccCc-ccccccCCc
Q 003793 645 HIPTGEKLYVFDAAMRYKAAGHETIVLAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMG-IIPLCFKPG 723 (795)
Q Consensus 645 ~~p~~~~~~v~~~a~~y~~~g~~~iiVaG~NfG~GSSRE~Aa~a~~~lGv~aVIA~SFarI~~~Nlin~G-ilpl~~~~~ 723 (795)
+...|+. + .+ ..|||||+|||||||||||+|+++++||+||||+||+|||+|||+|+| +||++. +.
T Consensus 120 ~v~~Gd~----------~-~~-~~IIVaG~NFGcGSSREhA~~AL~~~GI~aVIA~SFArIF~rN~iN~GLllpi~~-~~ 186 (246)
T PLN00072 120 FVEPGEM----------K-TK-YSIIIGGENFGCGSSREHAPVALGAAGAKAVVAESYARIFFRNSVATGEVYPLES-EV 186 (246)
T ss_pred ccCCCCC----------C-CC-ceEEEecCcccCCCcHHHHHHHHHHcCCCEEEECcHHHHHHHHHHhCCcceeecc-cH
Confidence 1111111 0 11 369999999999999999999999999999999999999999999999 789874 33
Q ss_pred cchhhcccCCCceEEEecCCccccCCCCceEEEEcCCCeEEEEEecCCCHHHHHHHHhcChHHHHHHHh
Q 003793 724 EDADTLGLAGHERYTINLPNKVSEIRPGQDITVTTDTGKSFTCTVRFDTEVELAYFDHGGILPYVIRNL 792 (795)
Q Consensus 724 ~~~~~l~~~~~~~~~idl~~~~~~~~~g~~v~v~~~~g~~~~~~~~~~~~~e~~~~~aGGll~~v~~~~ 792 (795)
+.++.+ ..+++++||+.++ .| .+..+|++|.+++. +.+++++++||+++|++++-
T Consensus 187 ~~~e~i--~~Gd~i~VDl~~~--------~v-~n~t~g~~~~~~p~---~~~~~Il~aGGl~~y~r~~g 241 (246)
T PLN00072 187 RICEEC--KTGDVVTVELGNS--------VL-INHTTGKEYKLKPI---GDAGPVIDAGGIFAYARKTG 241 (246)
T ss_pred HHHHhc--CCCCEEEEECCCC--------EE-EECCCCeEEEecCC---HHHHHHHHcCCHHHHHHhhC
Confidence 445554 4678899998753 22 23456788888873 34999999999999999873
No 44
>TIGR00171 leuD 3-isopropylmalate dehydratase, small subunit. Several pairs of archaeal proteins resemble the leuC and leuD pair in length and sequence but even more closely resemble the respective domains of homoaconitase, and their identity is uncertain. The candidate archaeal leuD proteins are not included in the seed alignment for this model and score below the trusted cutoff.
Probab=100.00 E-value=1.1e-33 Score=284.19 Aligned_cols=165 Identities=24% Similarity=0.401 Sum_probs=122.4
Q ss_pred cceEEeecCCCCcccccccCCCCCCCChHhhHHHHcCCCccccccccCCCCChhhcccccccchhhhhhhcCCCCCCcee
Q 003793 565 DAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLLERGVDRKDFNSYGSRRGNDEVMARGTFANIRIVNKLLNGEVGPKTV 644 (795)
Q Consensus 565 ~a~vL~~~gd~itTD~I~PaG~i~~~s~a~~~L~~~g~~~~~~n~yg~rr~n~evm~rg~F~n~r~~n~~~~~~~g~~t~ 644 (795)
..++....|||||||+|+| ++||+. +++ +.+.++.|.++|+.+. .|. .+.
T Consensus 8 ~G~~~~l~~dnIDTD~IiP----------~rfl~~--~~~-------------~~l~~~~f~~~R~~~~--~g~-~~~-- 57 (188)
T TIGR00171 8 TGLVAPLDAANVDTDAIIP----------KQFLKR--ITR-------------TGFGKHLFFDWRFLDA--NGK-EPN-- 57 (188)
T ss_pred EEEEEECCCCcCcHhhhhH----------HHHhCc--CCH-------------HHHHHhcccccccccc--ccC-CCC--
Confidence 4455444499999999999 799985 333 3457889999997421 110 010
Q ss_pred ecCCCcccccccHHHHHHHcCCceEEEeCCccCCCCchhhhhhhhhhcCeeEEEecchhHHHhhhhccCcccccccCCcc
Q 003793 645 HIPTGEKLYVFDAAMRYKAAGHETIVLAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGE 724 (795)
Q Consensus 645 ~~p~~~~~~v~~~a~~y~~~g~~~iiVaG~NfG~GSSRE~Aa~a~~~lGv~aVIA~SFarI~~~Nlin~Gilpl~~~~~~ 724 (795)
| .+++++ +.|+. ++|||||+|||||||||||+|+++.+||+||||+||+|||++||+|+|||||++++.+
T Consensus 58 --p----~F~ln~-~~~~~---~~IlVaG~NFGcGSSREhA~~aL~~~Gi~aVIA~SFa~IF~rN~~nnGll~i~~~~~~ 127 (188)
T TIGR00171 58 --P----DFVLNQ-PQYQG---ASILLARENFGCGSSREHAPWALDDYGFKVIIAPSFADIFYNNSFKNGLLPIRLSYDE 127 (188)
T ss_pred --c----chhhcc-cccCC---CcEEEcCCcccCCCcHHHHHHHHHHcCCCEEEechHHHHHHHHHHHCCCCccccCHHH
Confidence 1 244444 45654 4799999999999999999999999999999999999999999999999999998643
Q ss_pred chhhc--ccCCCceEEEecCCccccCCCCceEEEEcCCCeEEEEEecCCCHHHHHHHHhc
Q 003793 725 DADTL--GLAGHERYTINLPNKVSEIRPGQDITVTTDTGKSFTCTVRFDTEVELAYFDHG 782 (795)
Q Consensus 725 ~~~~l--~~~~~~~~~idl~~~~~~~~~g~~v~v~~~~g~~~~~~~~~~~~~e~~~~~aG 782 (795)
..+.+ ....+++++||+..+ +|+..+|+++.+++ ++..++.|-.|
T Consensus 128 i~~~~~~~~~~g~~i~vDl~~~----------~v~~~~~~~~~f~i---~~~~r~~ll~G 174 (188)
T TIGR00171 128 VKELFGQVENQGLQMTVDLENQ----------LIHDSEGKVYSFEI---DPFRKHCLING 174 (188)
T ss_pred HHHHHHHhhCCCCEEEEECCCC----------EEEeCCCeEEEEEe---CHHHHHHHHcC
Confidence 33321 136688999999874 34334567788874 67888888777
No 45
>PF00694 Aconitase_C: Aconitase C-terminal domain CAUTION: The Prosite patterns do not match this domain.; InterPro: IPR000573 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. 3-isopropylmalate dehydratase (or isopropylmalate isomerase; 4.2.1.33 from EC) catalyses the stereo-specific isomerisation of 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate. This enzyme performs the second step in the biosynthesis of leucine, and is present in most prokaryotes and many fungal species. The prokaryotic enzyme is a heterodimer composed of a large (LeuC) and small (LeuD) subunit, while the fungal form is a monomeric enzyme. Both forms of isopropylmalate are related and are part of the larger aconitase family []. Aconitases are mostly monomeric proteins which share four domains in common and contain a single, labile [4Fe-4S] cluster. Three structural domains (1, 2 and 3) are tightly packed around the iron-sulphur cluster, while a fourth domain (4) forms a deep active-site cleft. The prokaryotic enzyme is encoded by two adjacent genes, leuC and leuD, corresponding to aconitase domains 1-3 and 4 respectively [, ]. LeuC does not bind an iron-sulphur cluster. It is thought that some prokaryotic isopropylamalate dehydrogenases can also function as homoaconitase 4.2.1.36 from EC, converting cis-homoaconitate to homoisocitric acid in lysine biosynthesis []. Homoaconitase has been identified in higher fungi (mitochondria) and several archaea and one thermophilic species of bacteria, Thermus thermophilus []. This entry represents the 'swivel' domain found at the C-terminal of eukaryotic mAcn, cAcn/IPR1 and IRP2, and bacterial AcnA. This domain has a three layer beta/beta/alpha structure, and in cytosolic Acn is known to rotate between the cAcn and IRP1 forms of the enzyme. This domain is also found in the small subunit of isopropylmalate dehydratase (LeuD). More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0008152 metabolic process; PDB: 2PKP_A 2B3Y_A 2B3X_A 1V7L_B 1C97_A 1NIT_A 8ACN_A 1C96_A 1ACO_A 1NIS_A ....
Probab=99.98 E-value=7.9e-34 Score=269.95 Aligned_cols=128 Identities=41% Similarity=0.546 Sum_probs=109.5
Q ss_pred hHHHHcCCCccccccccCCCCChhhcccccccchhhhhhhcCCCCCCceeecCCCcccccccHHHHHHHcCCceEEEeCC
Q 003793 595 KYLLERGVDRKDFNSYGSRRGNDEVMARGTFANIRIVNKLLNGEVGPKTVHIPTGEKLYVFDAAMRYKAAGHETIVLAGA 674 (795)
Q Consensus 595 ~~L~~~g~~~~~~n~yg~rr~n~evm~rg~F~n~r~~n~~~~~~~g~~t~~~p~~~~~~v~~~a~~y~~~g~~~iiVaG~ 674 (795)
+||+.+|+...++++|+.+|++|.+|.+++|.+.++.|.+..+...+.+.+.|+++.+.+++.+++|+.++.+.||++|+
T Consensus 3 ~~~~~~G~~~~~~~s~idtd~i~p~~~~~~~~~~~l~~~l~~~~r~~~~~~~~~~~~~~f~~~~~~~~~~~~~ilv~~g~ 82 (131)
T PF00694_consen 3 KFLKIKGVAVPDFNSNIDTDQIIPAMFLGTFANTGLGNILFDDWRYGKTGYLPDGEKPDFYLNAPRYKVEGGDILVVGGE 82 (131)
T ss_dssp CCSEEEEEEEEEHHSTGGGHHHSCGGHHHSCGCTTTGGGTTTTSCBSSEEETTTTEEETHHHHHHHHHHTTTEEEEEE-S
T ss_pred ccEEEeCccccccccccccccccHHHHhccccCcchhhhhccCcceeeeeccccCcCCcchhchhhhcccCCCEEEECCC
Confidence 46667777777777777777788888888899999999988777778888999999999999999999888776777789
Q ss_pred ccCCCCchhhhhhhhhhcCeeEEEecchhHHHhhhhccCcccccccCC
Q 003793 675 EYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKP 722 (795)
Q Consensus 675 NfG~GSSRE~Aa~a~~~lGv~aVIA~SFarI~~~Nlin~Gilpl~~~~ 722 (795)
|||||||||||||+++++||+||||+||+|||++||+|+|||||+|++
T Consensus 83 nfG~GSSRE~A~~al~~~Gi~aVIA~SFa~If~~N~~n~Gllpl~~~~ 130 (131)
T PF00694_consen 83 NFGCGSSREHAAWALKDLGIRAVIAESFARIFRRNLINNGLLPLEFPE 130 (131)
T ss_dssp SBTBSS--THHHHHHHHTTEEEEEESSB-HHHHHHHHHTT-EEEEESC
T ss_pred cccCCcchHHHHHHHHHhCCeEEEechHHHHHHHHHHhCCceEEEecC
Confidence 999999999999999999999999999999999999999999999975
No 46
>cd01579 AcnA_Bact_Swivel Bacterial Aconitase-like swivel domain. Aconitase (aconitate hydratase or citrate hydrolyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediate product during the course of the reaction. This is the aconitase-like swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism. This distinct subfamily is found only in bacteria and archea. Its exact characteristics are not known.
Probab=99.98 E-value=2.3e-33 Score=264.17 Aligned_cols=121 Identities=47% Similarity=0.748 Sum_probs=95.5
Q ss_pred ecCCCCcccccccCCCCCCCChHhhHHHHcCCCccccccccCCCCChhhcccccccchhhhhhhcCCCCCCceeecCCCc
Q 003793 571 NFGDSITTDHISPAGSIHKDSPAAKYLLERGVDRKDFNSYGSRRGNDEVMARGTFANIRIVNKLLNGEVGPKTVHIPTGE 650 (795)
Q Consensus 571 ~~gd~itTD~I~PaG~i~~~s~a~~~L~~~g~~~~~~n~yg~rr~n~evm~rg~F~n~r~~n~~~~~~~g~~t~~~p~~~ 650 (795)
++|||||||||+|++. +||.. |++.+.|.+++|.+.+ |
T Consensus 1 ~~gdnidTD~IiP~~~--------~~~~~--------------~~~~~~l~~~~f~~~~-----------------p--- 38 (121)
T cd01579 1 KVGDNITTDHIMPAGA--------KVLPL--------------RSNIPAISEFVFHRVD-----------------P--- 38 (121)
T ss_pred CCCCcCChhhcCCCCc--------ccccc--------------CCCHHHHHHhhccCCC-----------------c---
Confidence 5899999999999652 46654 3455677888887532 1
Q ss_pred ccccccHHHHHHHcCCceEEEeCCccCCCCchhhhhhhhhhcCeeEEEecchhHHHhhhhccCcccccccCCccchhhcc
Q 003793 651 KLYVFDAAMRYKAAGHETIVLAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDADTLG 730 (795)
Q Consensus 651 ~~~v~~~a~~y~~~g~~~iiVaG~NfG~GSSRE~Aa~a~~~lGv~aVIA~SFarI~~~Nlin~Gilpl~~~~~~~~~~l~ 730 (795)
+++.+++..+ ..|||||+|||||||||||+|+++.+||+||||+||+|||+|||+|+|||||++++++.++.+
T Consensus 39 -----~f~~~~~~~~-~~iiVaG~nFG~GSSRE~A~~al~~~Gi~aVIA~SFa~If~rN~in~Gll~i~~~~~~~~~~~- 111 (121)
T cd01579 39 -----TFAERAKAAG-PGFIVGGENYGQGSSREHAALAPMYLGVRAVLAKSFARIHRANLINFGILPLTFADEDDYDRF- 111 (121)
T ss_pred -----hHHhhcccCC-CeEEEcCCcCCCCccHHHHHHHHHHHCCCEEEEccHHHHHHhHHhhcCcceEEecChhhHhhc-
Confidence 1223333322 469999999999999999999999999999999999999999999999999999877666653
Q ss_pred cCCCceEEEec
Q 003793 731 LAGHERYTINL 741 (795)
Q Consensus 731 ~~~~~~~~idl 741 (795)
..+++++||+
T Consensus 112 -~~gd~i~id~ 121 (121)
T cd01579 112 -EQGDQLELPL 121 (121)
T ss_pred -CCCCEEEcCC
Confidence 5677888764
No 47
>PRK01641 leuD isopropylmalate isomerase small subunit; Provisional
Probab=99.98 E-value=8.9e-33 Score=280.26 Aligned_cols=160 Identities=29% Similarity=0.479 Sum_probs=122.7
Q ss_pred ceEEeecCCCCcccccccCCCCCCCChHhhHHHHcCCCccccccccCCCCChhhcccccccchhhhhhhcCCCCCCceee
Q 003793 566 AYCLLNFGDSITTDHISPAGSIHKDSPAAKYLLERGVDRKDFNSYGSRRGNDEVMARGTFANIRIVNKLLNGEVGPKTVH 645 (795)
Q Consensus 566 a~vL~~~gd~itTD~I~PaG~i~~~s~a~~~L~~~g~~~~~~n~yg~rr~n~evm~rg~F~n~r~~n~~~~~~~g~~t~~ 645 (795)
.+++...|||||||+|+| ++||+. +++ +.|.++.|.++|+... +...|
T Consensus 9 G~~~~l~~dnIDTD~IiP----------a~fl~~--~~~-------------~~l~~~~f~~~r~~~~---~~~~p---- 56 (200)
T PRK01641 9 GLAVPLDRANVDTDQIIP----------KQFLKR--ITR-------------TGFGKGLFDDWRYLDD---GQPNP---- 56 (200)
T ss_pred EEEEEcCCCCCChhhcch----------HhHcCc--CCH-------------HHHHHhhhcccccccc---CCCCC----
Confidence 466666699999999999 699874 333 4467889999986421 21112
Q ss_pred cCCCcccccccHHHHHHHcCCceEEEeCCccCCCCchhhhhhhhhhcCeeEEEecchhHHHhhhhccCcccccccCCccc
Q 003793 646 IPTGEKLYVFDAAMRYKAAGHETIVLAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGED 725 (795)
Q Consensus 646 ~p~~~~~~v~~~a~~y~~~g~~~iiVaG~NfG~GSSRE~Aa~a~~~lGv~aVIA~SFarI~~~Nlin~Gilpl~~~~~~~ 725 (795)
.+++++ ++|+. +.|||||+|||||||||||+|+++.+||+||||+||+|||++||+|+|||||++++. +
T Consensus 57 ------~F~ln~-~~~~~---~~IlVaG~NFGcGSSRE~A~~al~~~Gi~aVIA~SFa~IF~rN~~n~Gll~i~~~~~-~ 125 (200)
T PRK01641 57 ------DFVLNQ-PRYQG---ASILLAGDNFGCGSSREHAPWALADYGFRAVIAPSFADIFYNNCFKNGLLPIVLPEE-D 125 (200)
T ss_pred ------Cccccc-cccCC---CeEEEcCCcccCCCcHHHHHHHHHHcCCCEEEechHHHHHHHHHHHCCCCeEeeCHH-H
Confidence 133443 55644 479999999999999999999999999999999999999999999999999999754 3
Q ss_pred hhhcc--c--CCCceEEEecCCccccCCCCceEEEEcCCCeEEEEEecCCCHHHHHHHHhc
Q 003793 726 ADTLG--L--AGHERYTINLPNKVSEIRPGQDITVTTDTGKSFTCTVRFDTEVELAYFDHG 782 (795)
Q Consensus 726 ~~~l~--~--~~~~~~~idl~~~~~~~~~g~~v~v~~~~g~~~~~~~~~~~~~e~~~~~aG 782 (795)
++.|. + ..+++++||+.++ +|+.. |+++.+.+ ++..++++.+|
T Consensus 126 i~~l~~~~~~~~g~~i~vDl~~~----------~v~~~-~~~~~f~i---~~~~~~~l~~G 172 (200)
T PRK01641 126 VDELFKLVEANPGAELTVDLEAQ----------TVTAP-DKTFPFEI---DPFRRHCLLNG 172 (200)
T ss_pred HHHHHHHHhcCCCCEEEEEcCCC----------EEecC-CeEEEEEc---CHHHHHHHHcC
Confidence 44442 2 5678999999874 33322 56777773 78899999998
No 48
>cd01577 IPMI_Swivel Aconatase-like swivel domain of 3-isopropylmalate dehydratase and related uncharacterized proteins. 3-isopropylmalate dehydratase catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate 3-isopropylmalate. IPMI is involved in fungal and bacterial leucine biosynthesis and is also found in eukaryotes. This is the aconitase-like swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism.
Probab=99.96 E-value=3.2e-30 Score=230.59 Aligned_cols=73 Identities=30% Similarity=0.521 Sum_probs=63.8
Q ss_pred eEEEeCCccCCCCchhhhhhhhhhcCeeEEEecchhHHHhhhhccCcccccccCCccchhhcccCCCceEEEec
Q 003793 668 TIVLAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDADTLGLAGHERYTINL 741 (795)
Q Consensus 668 ~iiVaG~NfG~GSSRE~Aa~a~~~lGv~aVIA~SFarI~~~Nlin~Gilpl~~~~~~~~~~l~~~~~~~~~idl 741 (795)
+|||+|+|||||||||||+|+++++||++|||+||+|||++||+|+||||+++.++..++ +....+++++||+
T Consensus 19 ~ilVaG~nfG~GSSRE~A~~al~~~Gi~avia~sFa~If~~N~~n~Gllp~~~~~~~~~~-~~~~~g~~i~vdl 91 (91)
T cd01577 19 DIIVAGKNFGCGSSREHAPWALKDAGIRAVIAESFARIFFRNAINNGLLPVTLADEDVEE-VEAKPGDEVEVDL 91 (91)
T ss_pred CEEEecCcccCCCcHHHHHHHHHHhCCCEEEEchHHHHHHhhHhhCCCcceeeChhhhhH-hhcCCCCEEEEeC
Confidence 599999999999999999999999999999999999999999999999999988765443 2345667777764
No 49
>cd00404 Aconitase_swivel Aconitase swivel domain. Aconitase (aconitate hydratase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. This is the aconitase swivel domain, which undergoes swivelling conformational change in the enzyme mechanism. The aconitase family contains the following proteins: - Iron-responsive element binding protein (IRE-BP). IRE-BP is a cytosolic protein that binds to iron-responsive elements (IREs). IREs are stem-loop structures found in the 5'UTR of ferritin, and delta aminolevulinic acid synthase mRNAs, and in the 3'UTR of transferrin receptor mRNA. IRE-BP also express aconitase activity. - 3-isopropylmalate dehydratase (isopropylmalate isomerase), the enzyme that catalyzes the second step in the biosynthesis of leucine. - Homoaconitase (homoaconitate hydratase), an enzyme that participates in the alpha-aminoadipate pathway of lysine biosynthesis and that converts cis-homoaconitate into homoisocitric acid.
Probab=99.96 E-value=1.7e-29 Score=224.41 Aligned_cols=71 Identities=45% Similarity=0.606 Sum_probs=64.6
Q ss_pred eEEEeCCccCCCCchhhhhhhhhhcCeeEEEecchhHHHhhhhccCcccccccCCccchhhcccCCCceEEEe
Q 003793 668 TIVLAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDADTLGLAGHERYTIN 740 (795)
Q Consensus 668 ~iiVaG~NfG~GSSRE~Aa~a~~~lGv~aVIA~SFarI~~~Nlin~Gilpl~~~~~~~~~~l~~~~~~~~~id 740 (795)
+|||||+|||||||||||+|+++++|+++|||+||+|||++|++|+|+|||+|++..+++++ ..+++++||
T Consensus 17 ~iiVaG~nfG~GSSRE~A~~al~~~Gi~aVia~sfa~If~rN~~n~Gll~l~~~~~~~~~~i--~~gd~l~id 87 (88)
T cd00404 17 GVVIGDENYGTGSSREHAALELRLLGGRAVIAKSFARIFFRNLVDQGLLPLEFADPEDYLKL--HTGDELDIY 87 (88)
T ss_pred EEEEecCCeecCCCHHHHHHHHHHhCCCEEEEeCHHHHHHhhHHhcCCceEEecCcchhhhc--CCCCEEEeC
Confidence 59999999999999999999999999999999999999999999999999999987777664 456777765
No 50
>cd01674 Homoaconitase_Swivel Homoaconitase swivel domain. This family includes homoaconitase and other uncharacterized proteins of the Aconitase family. Homoaconitase is part of an unusual lysine biosynthesis pathway found only in filamentous fungi, in which lysine is synthesized via the alpha-aminoadipate pathway. In this pathway, homoaconitase catalyzes the conversion of cis-homoaconitic acid into homoisocitric acid. The reaction mechanism is believed to be similar to that of other aconitases. This is the swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism.
Probab=99.94 E-value=2.6e-28 Score=228.86 Aligned_cols=99 Identities=27% Similarity=0.451 Sum_probs=78.7
Q ss_pred CCCCcccccccCCCCCCCChHhhHHHHcCCCccccccccCCCCChhhcccccccchhhhhhhcCCCCCCceeecCCCccc
Q 003793 573 GDSITTDHISPAGSIHKDSPAAKYLLERGVDRKDFNSYGSRRGNDEVMARGTFANIRIVNKLLNGEVGPKTVHIPTGEKL 652 (795)
Q Consensus 573 gd~itTD~I~PaG~i~~~s~a~~~L~~~g~~~~~~n~yg~rr~n~evm~rg~F~n~r~~n~~~~~~~g~~t~~~p~~~~~ 652 (795)
.|||+||+|+| ++||..... +.|.|.+..|.+.+ |
T Consensus 3 ~DnInTD~IiP----------~~y~~~~~~-------------~~e~la~~~~e~~d-----------------p----- 37 (129)
T cd01674 3 ADNLNTDGIYP----------GKYTYQDDI-------------TPEKMAEVCMENYD-----------------S----- 37 (129)
T ss_pred ccccchhccCc----------ccccccCCC-------------CHHHHHHhhcccCC-----------------c-----
Confidence 58999999999 578732111 34566777776543 1
Q ss_pred ccccHHHHHHHcCCceEEEeCCccCCCCchhhhhhhhhhcCeeEEEecchhHHHhhhhccCcccccccCC
Q 003793 653 YVFDAAMRYKAAGHETIVLAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKP 722 (795)
Q Consensus 653 ~v~~~a~~y~~~g~~~iiVaG~NfG~GSSRE~Aa~a~~~lGv~aVIA~SFarI~~~Nlin~Gilpl~~~~ 722 (795)
+++.+.+ .++|||+|+|||||||||||+|+++.+||+||||+||+|||+||++|+|+|||++++
T Consensus 38 ---~f~~~v~---~gdilVaG~nFG~GSSRE~A~~al~~~Gi~~VIA~SFa~If~rN~iN~Gl~~i~~~~ 101 (129)
T cd01674 38 ---EFSTKTK---QGDILVSGFNFGTGSSREQAATALLAKGIPLVVSGSFGNIFSRNSINNALLSIELPF 101 (129)
T ss_pred ---hhhhcCC---CCCEEEeCCccCCCCcHHHHHHHHHHcCccEEEechHHHHHHHhhHhcCCCeEechH
Confidence 1222222 247999999999999999999999999999999999999999999999999999975
No 51
>PRK09238 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; Validated
Probab=99.94 E-value=5.5e-27 Score=274.98 Aligned_cols=163 Identities=21% Similarity=0.283 Sum_probs=119.6
Q ss_pred cceEEeecCCCCcccccccCCCCCCCChHhhHHHHcCCCccccccccCCCCChhhcccccccchhhhhhhcCCCCCCcee
Q 003793 565 DAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLLERGVDRKDFNSYGSRRGNDEVMARGTFANIRIVNKLLNGEVGPKTV 644 (795)
Q Consensus 565 ~a~vL~~~gd~itTD~I~PaG~i~~~s~a~~~L~~~g~~~~~~n~yg~rr~n~evm~rg~F~n~r~~n~~~~~~~g~~t~ 644 (795)
..+| .|+|||||||||||| +|+.. |.|.+...+..|.+.+
T Consensus 167 ~g~V-~KvgdnInTD~I~Pa----------~~~~~--------------Rsdipl~a~~~~e~~~--------------- 206 (835)
T PRK09238 167 TVTV-FKVTGETNTDDLSPA----------PDAWS--------------RPDIPLHALAMLKNRR--------------- 206 (835)
T ss_pred EEEE-EEeCCCCchhccCCc----------ccccc--------------CCCHHHHHHHhccCCC---------------
Confidence 4566 899999999999995 46543 3455555555554322
Q ss_pred ecCCCcccccccHHHHHHHcCCceEEEeCCccCCCCchhhhhhhhhh------------cCeeEEEecchhHHHhhhhcc
Q 003793 645 HIPTGEKLYVFDAAMRYKAAGHETIVLAGAEYGSGSSRDWAAKGPML------------LGVKAVIAKSFERIHRSNLVG 712 (795)
Q Consensus 645 ~~p~~~~~~v~~~a~~y~~~g~~~iiVaG~NfG~GSSRE~Aa~a~~~------------lGv~aVIA~SFarI~~~Nlin 712 (795)
|+ +.+++++++..| ..|||+|+|||||||||||++++.. ++.++|||+||+|||++|++|
T Consensus 207 --p~-----f~~~i~~~~~~G-~~IivaG~nfG~GSSREhA~~al~~~~G~~ip~vP~k~~g~~VIa~SfArIFf~Nain 278 (835)
T PRK09238 207 --PG-----PIKQIEELKKKG-HPVAYVGDVVGTGSSRKSATNSVLWHMGEDIPYVPNKRAGGVVLGGKIAPIFFNTMED 278 (835)
T ss_pred --Cc-----HHHHHHhhccCC-CEEEEECCCEeCCcCHHHHHHHHHHhhCCccccccccceEEEEEeCchHHHHHhhhHH
Confidence 11 223444444455 3599999999999999999999732 235999999999999999999
Q ss_pred CcccccccCCccchhhcccCCCceEEEecCCccccCCCCceEEEEcCCCeE-EEEEecCCCHHHHHHHHhcChHHHHHHH
Q 003793 713 MGIIPLCFKPGEDADTLGLAGHERYTINLPNKVSEIRPGQDITVTTDTGKS-FTCTVRFDTEVELAYFDHGGILPYVIRN 791 (795)
Q Consensus 713 ~Gilpl~~~~~~~~~~l~~~~~~~~~idl~~~~~~~~~g~~v~v~~~~g~~-~~~~~~~~~~~e~~~~~aGGll~~v~~~ 791 (795)
+|+|||+|+ ++.+ ..+++++||+.++ .|...+|+. +.+.+ .++.+++++++||++||++.|
T Consensus 279 ~GlLpIe~d----~~~i--~~Gd~i~Id~~~g----------~I~~~~g~~~~~f~l--~p~~~~div~AGGli~~i~gr 340 (835)
T PRK09238 279 SGALPIELD----VSKL--NMGDVIDIYPYKG----------KIRNETGEVIATFKL--KTDVLLDEVRAGGRIPLIIGR 340 (835)
T ss_pred cCCceEEeC----HHHc--CCCCEEEEECCCC----------EEEeCCCeEEEEEec--CcHHHHHHHHcCChHHHHHhc
Confidence 999999995 4443 4678999998764 233344432 55554 478999999999999999987
Q ss_pred hh
Q 003793 792 LI 793 (795)
Q Consensus 792 ~~ 793 (795)
-+
T Consensus 341 ~l 342 (835)
T PRK09238 341 GL 342 (835)
T ss_pred cc
Confidence 44
No 52
>KOG0454 consensus 3-isopropylmalate dehydratase (aconitase superfamily) [Amino acid transport and metabolism]
Probab=99.91 E-value=2e-25 Score=241.57 Aligned_cols=377 Identities=14% Similarity=0.063 Sum_probs=276.3
Q ss_pred HHhcCCCCCccCCCCceEEEccCCcccCCCCchhHHHHhHHHHHHHhhhhhhhhhhhccccCcceeeCCCCceecccccc
Q 003793 5 MKNLNSDPKKINPLVPVDLVVDHSVQVDVARSENAVQANMEFEFQRNQERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLE 84 (795)
Q Consensus 5 ~~~~g~~~~~~~P~~pv~lv~DH~v~~~~~~~~~a~~~n~~~e~~rn~e~~~fl~~~~~~~~~~~~~~pg~GI~Hqv~~E 84 (795)
.++++....+|+|++ +...+||.+-+...+ .-.....+++..|-...- ++.|-- +-.+|-.-+--.|+||.-..
T Consensus 111 iedlr~aAaVv~g~K-ia~n~k~am~vpgsg--lvkk~aeaegld~if~ea-gF~wre-agcs~clgmnpd~l~~yerc- 184 (502)
T KOG0454|consen 111 IEDLREAAAVVDGEK-IAVNPKHAMFVPGSG--LVKKVAEAEGLDRIFNEA-GFYWRE-AGCSFCLGMNPDGLCHYERC- 184 (502)
T ss_pred HHHHhhhhhccccce-eEecccceEEecCch--hhHhHHHHHhhHHHHHhh-ceehhh-ccccccccCCchhccHHHHh-
Confidence 356777788999997 999999998776443 111122233333322221 223322 22234444444799996322
Q ss_pred cccceeecCCCcccc-CeEEecCCCCCccCccccccccccHHHHHHHHccCceeeeCCcEEEEEEeccCCCCCChhhHHH
Q 003793 85 YLGRVVFNTDGILYP-DSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLTGKLRDGVTATDLVL 163 (795)
Q Consensus 85 ~~a~~v~~~~G~~~P-~~ivGtDSHT~~~GalG~la~GvGg~e~~~~m~g~~~~~~vPevv~V~l~G~l~~gVtakDviL 163 (795)
+ .+...| ....|+||||++.++.+.+|.|+++.++.....++...+++|.++.++++|+.+.-..++|+++
T Consensus 185 --a------stsnRnfEgrqGa~srThlma~s~qfAagi~~~~~~~~~~~~k~~~~~~Ps~~l~~~g~s~sv~~~~~li~ 256 (502)
T KOG0454|consen 185 --A------STSNRNFEGRQGADSRTHLMAASMQFAAGIGGHDLGFREFTGKDSLKVSPSPFLTLKGESPSVLPAKDLIV 256 (502)
T ss_pred --h------hccCCCccccccccccchhhhhhHHhhccccccccccccccccccccCCCCceEEeCCCCccccccccchh
Confidence 1 566677 5789999999999999999999999999999888889999999999999999999999999999
Q ss_pred HHHHHHHhcCccceEEEEecCcCCCCCcccchhhcccccccCceeeeeeCChHHHHHHHhcCCChhhHHHHHHHHHHhhh
Q 003793 164 TVTQMLRKHGVVGKFVEFYGEGMGQLPLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVSMIEEYLRANKM 243 (795)
Q Consensus 164 ~i~~~l~~~G~~g~~vEf~G~gv~~Ls~~~R~TI~NMa~E~GA~~~~fp~D~~t~~yL~~~gr~~~~~~~~~~y~~~~~l 243 (795)
.++...-..+...+..||-+--. +|+++.|+|||||..|-+-|-.|+|+|-.|+-|-....+.... -
T Consensus 257 ~ia~ds~t~i~~~at~e~~s~~s-Sl~m~~F~tLc~vv~dNiDTD~IIP~qfltli~~~~~~~~~f~------------~ 323 (502)
T KOG0454|consen 257 SIATDSSTDIPRVATMEFSSTTS-SLGMETFHTLCGVVADNIDTDQIIPAQFLTLIPSTGLILSCFY------------E 323 (502)
T ss_pred hhhccccccccceecccCCCccc-cccCcceeeeehhhhhhCCcCcccChhhhcccccchhhhhhhh------------h
Confidence 99888888888899999977666 8999999999999999999999999987777665544333211 1
Q ss_pred cccCCCCCCC-CccceEEEEECCCccceeecCCCCCCccccCCcchhhHHhhhccccccCCCCCccccccccccccCCCc
Q 003793 244 FVDYNEPEQE-RSYSSYLQLDLADVEPCISGPKRPHDRVPLKDMKADWHACLENQVGFKGFAVPKQEQDKVAKFSFHGQP 322 (795)
Q Consensus 244 ~~~~~~~D~~-a~Y~~vieiDLs~leP~VA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~ 322 (795)
| +.|.+ +.|...+.+|.+..+|....|++ ||.-==|+-
T Consensus 324 ~----~~dg~~k~~~~dFv~~vE~~~~~siii~~-DNFGCGSSR------------------------------------ 362 (502)
T KOG0454|consen 324 V----ALDGLPKSFVTDFVLPVEPLRKYSIIIGG-DNFGCGSSR------------------------------------ 362 (502)
T ss_pred h----eecCCchhhccceeccccccceeEEEecc-CCccccccc------------------------------------
Confidence 2 22333 67899999999999999999988 654222211
Q ss_pred ccccCccEEEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCccCCceeEEEecCcHHHHH-----HHHHc---CcHHHHHh
Q 003793 323 AELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLEVKPWVKTSLAPGSGVVTK-----YLQQS---GLQKYLNQ 394 (795)
Q Consensus 323 ~~l~~g~V~~a~IGSCTN~~~~dl~~aA~lLa~~a~~~G~kv~~~V~~~v~PgS~~V~~-----~l~~~---Gl~~~l~~ 394 (795)
.|-+|...++|+|+-..-++.|++ .++-+..|++++ +...+.|..+-+.. .+-.+ =++.++..
T Consensus 363 ---EHAPv~L~~~GakaivA~Sya~IF----frN~~atG~l~~--~~s~~~v~de~~~~dv~~v~l~~dg~~~~i~~t~~ 433 (502)
T KOG0454|consen 363 ---EHAPVCLGAAGAKAIVAPSYARIF----FRNSVATGELPP--LPSEVRVCDECVTGDVYTVELSVDGGNQLINHTTG 433 (502)
T ss_pred ---ccCcchhhhcccceecchhHHHHH----HHhHHhcCCccC--CCceeeecccceecceeeEEcccCCcceeeeeecc
Confidence 123455678999999998886655 566678899877 33445555433321 12221 25566777
Q ss_pred cCcEEeccCCccccCCC-CCCChhhhhhcccCceeEEEEeccCCCCCCCCCCccCCceecChHHHHHHHhccc
Q 003793 395 QGFHIVGYGCTTCIGNS-GDLDESVATAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGT 466 (795)
Q Consensus 395 aG~~i~~~gCg~CiG~~-g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~vaA~AlaG~ 466 (795)
.+..=+.|-|..|.++. +++ ..-.++. ..|+|+||||++|||.+..++|||||.+|+|++++|+
T Consensus 434 k~~f~lkP~~~aclV~~ad~I----~~~~~ke----~mIss~~a~r~e~~~~~eg~~~la~~~~v~~~k~t~~ 498 (502)
T KOG0454|consen 434 KVYFKLKPFGDACLVIDADGI----FAYARKE----GMISSTEANRPERMGHKEGQIYLASPYTVAASKLTGR 498 (502)
T ss_pred cceeecCcccccCcccCchHH----HHhhccc----cccchhhhcCccccCccccceEEccccchhhhhhcCC
Confidence 77766889999999986 322 1112222 2589999999999999999999999999999999998
No 53
>cd01576 AcnB_Swivel Aconitase B swivel domain. Aconitate hydratase B is involved in energy metabolism as part of the TCA cycle. It catalyses the formation of cis-aconitate from citrate. This is the aconitase swivel domain, which undergoes swivelling conformational change in the enzyme mechanism. The domain structure of Aconitase B is different from other Aconitases in that he swivel domain that is found at N-terminus of B family is normally found at C-terminus for other Aconitases. In most members of the family, there is also a HEAT domain before domain 4, which is believed to play a role in protein-protein interaction.
Probab=99.91 E-value=5e-25 Score=209.18 Aligned_cols=67 Identities=19% Similarity=0.260 Sum_probs=58.4
Q ss_pred eEEEeCCccCCCCchhhhhhhhh------------hcCeeEEEecchhHHHhhhhccCcccccccCCccchhhcccCCCc
Q 003793 668 TIVLAGAEYGSGSSRDWAAKGPM------------LLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDADTLGLAGHE 735 (795)
Q Consensus 668 ~iiVaG~NfG~GSSRE~Aa~a~~------------~lGv~aVIA~SFarI~~~Nlin~Gilpl~~~~~~~~~~l~~~~~~ 735 (795)
.|+|+|+|||||||||||+++++ .+|++||||+||+|||+||++|+|+||++++. +. +..++
T Consensus 52 ~ilvaG~nFG~GSSRe~A~~aL~w~~g~~~~~~~~~~g~~aVia~sfa~IF~rNa~n~Gl~~i~~~~----~~--~~~GD 125 (131)
T cd01576 52 PVAYVGDVVGTGSSRKSATNSVLWHTGKDIPFVPNKRAGGVVLGGKIAPIFFNTAEDSGALPIQLDV----SV--LDMGD 125 (131)
T ss_pred eEEEECCceeeccchHHHHHHHHHHhccccccccccceEEEEEeCchhHHHHhhHHHcCCceEEeCH----HH--cCCCC
Confidence 49999999999999999999998 77999999999999999999999999999862 22 34567
Q ss_pred eEEEe
Q 003793 736 RYTIN 740 (795)
Q Consensus 736 ~~~id 740 (795)
++++|
T Consensus 126 ~l~vD 130 (131)
T cd01576 126 ILNID 130 (131)
T ss_pred EEEeC
Confidence 66665
No 54
>TIGR00117 acnB aconitate hydratase 2. Aconitate hydratase (aconitase) is an enzyme of the TCA cycle. This model describes aconitase 2, AcnB, which has weak similarity to aconitase 1. It is found almost exclusively in the Proteobacteria.
Probab=99.90 E-value=4.3e-24 Score=250.04 Aligned_cols=161 Identities=20% Similarity=0.240 Sum_probs=118.3
Q ss_pred ceEEeecCCCCcccccccCCCCCCCChHhhHHHHcCCCccccccccCCCCChhhcccccccchhhhhhhcCCCCCCceee
Q 003793 566 AYCLLNFGDSITTDHISPAGSIHKDSPAAKYLLERGVDRKDFNSYGSRRGNDEVMARGTFANIRIVNKLLNGEVGPKTVH 645 (795)
Q Consensus 566 a~vL~~~gd~itTD~I~PaG~i~~~s~a~~~L~~~g~~~~~~n~yg~rr~n~evm~rg~F~n~r~~n~~~~~~~g~~t~~ 645 (795)
.+| .|+||+|+||+||| ++||..| .+.+.+.+..|.+.+
T Consensus 169 g~V-~k~gddinTD~i~P----------a~~a~sr--------------~D~~~~a~~m~~~~~---------------- 207 (844)
T TIGR00117 169 VTV-FKVTGETNTDDLSP----------APDAWTR--------------PDIPLHALAMLKNAR---------------- 207 (844)
T ss_pred EEE-EEeCCCCchhccCC----------hhhhhcC--------------CCHHHHHHHHhhcCC----------------
Confidence 444 59999999999999 6888753 233333444443321
Q ss_pred cCCCcccccccHHHHHHHcCCceEEEeCCccCCCCchhhhhhhh-------------hhcCeeEEEecchhHHHhhhhcc
Q 003793 646 IPTGEKLYVFDAAMRYKAAGHETIVLAGAEYGSGSSRDWAAKGP-------------MLLGVKAVIAKSFERIHRSNLVG 712 (795)
Q Consensus 646 ~p~~~~~~v~~~a~~y~~~g~~~iiVaG~NfG~GSSRE~Aa~a~-------------~~lGv~aVIA~SFarI~~~Nlin 712 (795)
|+ ..+.-.+.++.|. .|+|+|+|||||||||||+.++ +.+| .+|||+||+||||||++|
T Consensus 208 -p~-----~~~~i~~~~~~Gd-~iivaG~nfG~GSSRe~A~~al~w~~g~~~p~vp~k~~G-~~Via~sfArIFfrnain 279 (844)
T TIGR00117 208 -EG-----IEPQIEALKQKGF-PVAYVGDVVGTGSSRKSATNSVLWHMGDDIPFVPNKRGG-GLCLGGKIAPIFFNTMED 279 (844)
T ss_pred -cc-----HHHHHHHhccCCC-eEEEeCCceecCcchHHHHHHHHHhccCccccccccccc-ceEEeccChHhhhcchhh
Confidence 10 0111123344443 2999999999999999999999 9999 999999999999999999
Q ss_pred CcccccccCCccchhhcccCCCceEEEecCCccccCCCCceEEEEcCCCeE-EEEEecCCCHHHHHHHHhcChHHHHHHH
Q 003793 713 MGIIPLCFKPGEDADTLGLAGHERYTINLPNKVSEIRPGQDITVTTDTGKS-FTCTVRFDTEVELAYFDHGGILPYVIRN 791 (795)
Q Consensus 713 ~Gilpl~~~~~~~~~~l~~~~~~~~~idl~~~~~~~~~g~~v~v~~~~g~~-~~~~~~~~~~~e~~~~~aGGll~~v~~~ 791 (795)
.|+|||+++ .+. +..|++++||+.++ .|...+|++ +.+.+ .++..++++++||++||+.-|
T Consensus 280 ~Gl~~ie~~----~~~--l~~GD~i~Id~~~G----------~I~n~~g~~~~~f~~--~p~~l~div~AGGli~~i~gr 341 (844)
T TIGR00117 280 SGALPIEVD----VSN--LNMGDVIDIYPYKG----------EITNHEGELLATFEL--KPETLLDEVRAGGRIPLIIGR 341 (844)
T ss_pred cCCCeEEeC----Hhh--cCCCCEEEEECCCC----------EEEeCCCCEEEEeee--CCHHHHHHHHcCCchhhhhcc
Confidence 999999885 233 45689999998764 232234544 77765 378899999999999999865
Q ss_pred hh
Q 003793 792 LI 793 (795)
Q Consensus 792 ~~ 793 (795)
-+
T Consensus 342 ~l 343 (844)
T TIGR00117 342 GL 343 (844)
T ss_pred cc
Confidence 43
No 55
>PRK14812 hypothetical protein; Provisional
Probab=99.80 E-value=5.1e-20 Score=172.74 Aligned_cols=90 Identities=27% Similarity=0.336 Sum_probs=70.4
Q ss_pred CCCchhhhhhhhhhcCeeEEEecchhHHHhhhhccCcccccccCCccchhhc-ccCCCceEEEecCCccccCCCCceEEE
Q 003793 678 SGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDADTL-GLAGHERYTINLPNKVSEIRPGQDITV 756 (795)
Q Consensus 678 ~GSSRE~Aa~a~~~lGv~aVIA~SFarI~~~Nlin~Gilpl~~~~~~~~~~l-~~~~~~~~~idl~~~~~~~~~g~~v~v 756 (795)
||||||||+|+++.+||+||||+||++||++||+|+||||++++++ .++.| .+..+++++||+.++ +|
T Consensus 2 cGSSREhA~wAL~~~Gi~aVIA~SFa~IF~~N~~nnGllpi~~~~~-~~~~l~~~~~g~~i~vDL~~~----------~v 70 (119)
T PRK14812 2 AGSSREHAAWALADYGFKVVIAGSFGDIHYNNELNNGMLPIVQPRE-VREKLAQLKPTDQVTVDLEQQ----------KI 70 (119)
T ss_pred CCCcHHHHHHHHHHcCCCEEEEchHHHHHHhHHHHCCCCcccCCHH-HHHHHhccCCCCEEEEEcCCC----------EE
Confidence 9999999999999999999999999999999999999999998754 35544 246788999999874 33
Q ss_pred EcCCCeEEEEEecCCCHHHHHHHHhc
Q 003793 757 TTDTGKSFTCTVRFDTEVELAYFDHG 782 (795)
Q Consensus 757 ~~~~g~~~~~~~~~~~~~e~~~~~aG 782 (795)
+.. ++++.+.+ .+..+.-|-+|
T Consensus 71 ~~~-~~~~~f~i---~~~~~~~Ll~G 92 (119)
T PRK14812 71 ISP-VEEFTFEI---DSEWKHKLLNS 92 (119)
T ss_pred EcC-CeEEEEEE---CHHHHHHHHhC
Confidence 332 35677776 34444445455
No 56
>PLN00094 aconitate hydratase 2; Provisional
Probab=99.80 E-value=1.5e-19 Score=211.77 Aligned_cols=119 Identities=22% Similarity=0.267 Sum_probs=98.4
Q ss_pred cHHHHHHHcCCceEEEeCCccCCCCchhhhhhhh-------------hhcCeeEEEecchhHHHhhhhccCcccccccCC
Q 003793 656 DAAMRYKAAGHETIVLAGAEYGSGSSRDWAAKGP-------------MLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKP 722 (795)
Q Consensus 656 ~~a~~y~~~g~~~iiVaG~NfG~GSSRE~Aa~a~-------------~~lGv~aVIA~SFarI~~~Nlin~Gilpl~~~~ 722 (795)
+.-...|+.|++ |+|+|+|||||||||||+.++ +.+|+.+ ||+||+||||||++|.|+|||+++
T Consensus 283 ~~i~~lk~~g~~-iivvG~nfG~GSSResA~nsl~w~~g~~ip~vpnK~~G~~~-ia~sfArIFfrnain~G~~~Ie~~- 359 (938)
T PLN00094 283 AQIEELKKKGHP-LAYVGDVVGTGSSRKSATNSVLWFMGDDIPNVPNKRTGGVC-IGGKIAPIFFNTMEDSGALPIEMD- 359 (938)
T ss_pred HHHHHHHHcCCc-eEEECCceecCCchHHHHHHHHHhccCCCcCCccccccceE-eeceecHHHhhchhhcCCceEecc-
Confidence 344678889986 999999999999999999999 9999999 999999999999999999999985
Q ss_pred ccchhhcccCCCceEEEecCCccccCCCCceEEEEcCCCeEE-EEEecCCCHHHHHHHHhcChHHHHHHHhh
Q 003793 723 GEDADTLGLAGHERYTINLPNKVSEIRPGQDITVTTDTGKSF-TCTVRFDTEVELAYFDHGGILPYVIRNLI 793 (795)
Q Consensus 723 ~~~~~~l~~~~~~~~~idl~~~~~~~~~g~~v~v~~~~g~~~-~~~~~~~~~~e~~~~~aGGll~~v~~~~~ 793 (795)
.+. +..|++++||+.++ .| .+..+|+++ .+.+ .++..++++++||++||++-|-+
T Consensus 360 ---v~~--i~~GD~I~id~~~G--------~I-~n~~~g~~~~~f~~--~p~~l~d~vrAGGli~~i~gr~l 415 (938)
T PLN00094 360 ---VKN--LNMGDVIDIYPYEG--------VV-KRHGTDEVITTFSL--KTPVLLDEVRAGGRIPLIIGRGL 415 (938)
T ss_pred ---Hhh--cCCCCEEEEEcCCC--------EE-EecCCCeEEEeccC--CChHHHHHHHcCCcHhhhhcccc
Confidence 333 35688999998764 12 233567777 6655 37889999999999999987643
No 57
>PF06434 Aconitase_2_N: Aconitate hydratase 2 N-terminus; InterPro: IPR015929 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal region of bacterial aconitase B (AcnB), which consists of both a HEAT-like domain and a 'swivel' domain. HEAT-like domains are usually implicated in protein-protein interactions, while the 'swivel' domain is usually a mobile unit in proteins that carry it. In AcnB, this N-terminal region was shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=98.39 E-value=5.6e-07 Score=90.57 Aligned_cols=120 Identities=21% Similarity=0.275 Sum_probs=74.4
Q ss_pred cHHHHHHHcCCceEEEeCCccCCCCchhhhhhhhhhcCe------------eEEEecchhHHHhhhhccCcccccccCCc
Q 003793 656 DAAMRYKAAGHETIVLAGAEYGSGSSRDWAAKGPMLLGV------------KAVIAKSFERIHRSNLVGMGIIPLCFKPG 723 (795)
Q Consensus 656 ~~a~~y~~~g~~~iiVaG~NfG~GSSRE~Aa~a~~~lGv------------~aVIA~SFarI~~~Nlin~Gilpl~~~~~ 723 (795)
++-+..|+.|.+.+.| |.--|.||||--|.-....... -.||...+|.||++-+---|-||++++
T Consensus 44 ~~i~~lk~kg~~la~v-GdvvGtGSSRKSa~NSvlW~~G~diP~VPnKr~GGvv~G~~IAPIFfnT~edsGaLPIe~d-- 120 (204)
T PF06434_consen 44 EQIEELKEKGHPLAYV-GDVVGTGSSRKSATNSVLWHMGEDIPYVPNKRTGGVVIGGKIAPIFFNTAEDSGALPIECD-- 120 (204)
T ss_dssp HHHHHHHTTSS-EEEE-EEEEEES---THHHHHHHHHHSEEETTEEEEEE--EEEEEEE-HHHHHHHHHTT-EEEE----
T ss_pred HHHHHHHHcCCcEEEe-cCccccCcccchhhhhhhhhccCCCCCCCccCccCeEECCEEcceEeccccccCCceEEEe--
Confidence 3446778888875555 7789999999999887755432 357889999999999999999999874
Q ss_pred cchhhcccCCCceEEEecCCccccCCCCceEEEEcCCCeEEEEEecCCCHHHHHHHHhcChHHHHHHHhh
Q 003793 724 EDADTLGLAGHERYTINLPNKVSEIRPGQDITVTTDTGKSFTCTVRFDTEVELAYFDHGGILPYVIRNLI 793 (795)
Q Consensus 724 ~~~~~l~~~~~~~~~idl~~~~~~~~~g~~v~v~~~~g~~~~~~~~~~~~~e~~~~~aGGll~~v~~~~~ 793 (795)
... +..|+.++|+.-++ .+...+|+ ......+.++..++-++|||-+|.+.-|-+
T Consensus 121 --v~~--l~~Gdvi~I~p~~g----------ki~~~~ge-v~~~f~l~p~~l~DevrAGGri~LiiGR~L 175 (204)
T PF06434_consen 121 --VSS--LNTGDVITIYPYEG----------KIYKENGE-VISTFELKPQTLLDEVRAGGRIPLIIGRGL 175 (204)
T ss_dssp ---TT----TT-EEEEETTTT----------EEEETT---EEEE---S-TCHHHHHHHTSHHHHHHHHHH
T ss_pred --ccc--cCCCcEEEEecCCc----------EEECCCCC-EEEEeecCchhHHHHHhcCCcEEEEechHH
Confidence 333 34578899986653 23334453 222222235567789999999999886643
No 58
>COG1049 AcnB Aconitase B [Energy production and conversion]
Probab=96.25 E-value=0.0086 Score=69.51 Aligned_cols=117 Identities=22% Similarity=0.310 Sum_probs=76.6
Q ss_pred HHHHHHHcCCceEEEeCCccCCCCchhhhhhhhhhcCe------------eEEEecchhHHHhhhhccCcccccccCCcc
Q 003793 657 AAMRYKAAGHETIVLAGAEYGSGSSRDWAAKGPMLLGV------------KAVIAKSFERIHRSNLVGMGIIPLCFKPGE 724 (795)
Q Consensus 657 ~a~~y~~~g~~~iiVaG~NfG~GSSRE~Aa~a~~~lGv------------~aVIA~SFarI~~~Nlin~Gilpl~~~~~~ 724 (795)
.-+..|+.|++ ++-.|.--|.||||--|.......+- -.|+..-.+.||++-+---|-|||+++
T Consensus 213 ~i~~lk~Kg~~-vayvgdvvGtGSSRkSa~NsvlW~~g~diP~VPnkr~ggivlG~~IaPIFfnT~ed~GalPI~~d--- 288 (852)
T COG1049 213 QIEALKQKGHP-VAYVGDVVGTGSSRKSATNSVLWHMGDDIPYVPNKRYGGIVLGGKIAPIFFNTMEDAGALPIEVD--- 288 (852)
T ss_pred HHHHHhhcCce-EEEeccccccCcccccccceeeeecCCCCCCCCccCccceeecCeecceeeeehhhcCCCceEee---
Confidence 44667888987 55556669999999988765443322 234555668899988888999999863
Q ss_pred chhhcccCCCceEEEecCCccccCCCCceEEEE-cCCCeEEEEEecCCCHHHHHHHHhcChHHHHHHH
Q 003793 725 DADTLGLAGHERYTINLPNKVSEIRPGQDITVT-TDTGKSFTCTVRFDTEVELAYFDHGGILPYVIRN 791 (795)
Q Consensus 725 ~~~~l~~~~~~~~~idl~~~~~~~~~g~~v~v~-~~~g~~~~~~~~~~~~~e~~~~~aGGll~~v~~~ 791 (795)
... +..|+.++|+--++ .++ +.+|+. -.+..+.++..++-+++||-+|.+.-|
T Consensus 289 -v~~--l~~Gdvi~i~py~g----------ki~~~~~ge~-v~~f~lkt~~lldevrAGgripliiGr 342 (852)
T COG1049 289 -VSN--LEMGDVIDIYPYEG----------KIRNNNTGEV-VATFSLKTDVLLDEVRAGGRIPLIIGR 342 (852)
T ss_pred -ecc--ccccceEEeeccCC----------eeeccCCCcE-EEEeecCchhHHHHHhcCCceeEEEcc
Confidence 233 34567777764442 222 233432 222223478899999999998876543
No 59
>PF04412 DUF521: Protein of unknown function (DUF521); InterPro: IPR007506 This is a group of hypothetical proteins.
Probab=96.02 E-value=0.018 Score=65.43 Aligned_cols=69 Identities=26% Similarity=0.319 Sum_probs=60.1
Q ss_pred ccEEEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCccCCceeEEEecCcHHHHHHHHHcCcHHHHHhcCcEEeccCC
Q 003793 328 GSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLEVKPWVKTSLAPGSGVVTKYLQQSGLQKYLNQQGFHIVGYGC 404 (795)
Q Consensus 328 g~V~~a~IGSCTN~~~~dl~~aA~lLa~~a~~~G~kv~~~V~~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~i~~~gC 404 (795)
++|+.++|| |=--|++.++..|++| +|+|+++.++++|. -|+.|+..+.+.|+.+.|+++|++|+.-.|
T Consensus 288 ~~~D~V~lG-cPH~S~~El~~ia~ll------~gr~~~~~~~~~i~-t~~~v~~~a~~~G~~~~le~~G~~iv~dTC 356 (400)
T PF04412_consen 288 EKVDLVALG-CPHLSLEELREIAELL------EGRKVHPNVPLWIT-TSRAVYELAERMGYVERLEKAGVQIVTDTC 356 (400)
T ss_pred CCCCEEEEC-CCCCCHHHHHHHHHHH------hCCCCCCCceEEEE-CCHHHHHHHHhCCHHHHHHHcCCEEEcccc
Confidence 346677775 8888899999999999 89999999988776 678999999999999999999999997665
No 60
>COG1679 Predicted aconitase [General function prediction only]
Probab=94.19 E-value=0.12 Score=57.72 Aligned_cols=69 Identities=22% Similarity=0.250 Sum_probs=58.1
Q ss_pred ccEEEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCccCCceeEEEecCcHHHHHHHHHcCcHHHHHhcCcEEeccCC
Q 003793 328 GSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLEVKPWVKTSLAPGSGVVTKYLQQSGLQKYLNQQGFHIVGYGC 404 (795)
Q Consensus 328 g~V~~a~IGSCTN~~~~dl~~aA~lLa~~a~~~G~kv~~~V~~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~i~~~gC 404 (795)
+.++..+|| |---|.+.++..|.+| +|+|-++.+.++|+ -|++|+.++.++|+++.|+++|..++.-.|
T Consensus 288 ~epdli~iG-cPHaS~~E~~~la~~l------~~r~~~~~~~~~V~-~sr~v~~~a~~~G~~~~le~~g~~vv~DtC 356 (403)
T COG1679 288 GEPDLIALG-CPHASLEELRRLAELL------KGRKRPAGVPLYVT-TSRAVYAQARKEGYLAKLEELGVKVVSDTC 356 (403)
T ss_pred CCCCEEEeC-CCCCCHHHHHHHHHHH------hccCCCCCCCEEEE-cCHHHHHHHhhhhhHHHHHHcCCEEecCce
Confidence 345667776 7778899999999999 88887888777665 689999999999999999999999987553
No 61
>cd01355 AcnX Putative Aconitase X catalytic domain. Putative Aconitase X catalytic domain. It is predicted by comparative genomic analysis. The proteins are mainly found in archaea and proteobacteria. They are distantly related to Aconitase family of proteins by sequence similarity and seconary structure prediction. The functions have not yet been experimentally characterized. Thus, the prediction should be treated with caution.
Probab=91.59 E-value=0.42 Score=54.30 Aligned_cols=69 Identities=19% Similarity=0.282 Sum_probs=56.6
Q ss_pred EEEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCccCCceeEEEecCcHHHHHHHHHcCcHHHHHhcCcEEeccCCccccC
Q 003793 330 VVIAAITSCTNTSNPSVMLGAGLVAKKACELGLEVKPWVKTSLAPGSGVVTKYLQQSGLQKYLNQQGFHIVGYGCTTCIG 409 (795)
Q Consensus 330 V~~a~IGSCTN~~~~dl~~aA~lLa~~a~~~G~kv~~~V~~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~i~~~gCg~CiG 409 (795)
+++++| +|=--|.+.++.-|++| +|+++++.++++|. -|+.|+ +.+.|+.+.++++|++|+.-.|. |+-
T Consensus 279 ~dlv~l-GcPH~Sl~E~~~la~ll------~g~~~~~~~~~~v~-t~r~v~--a~~~g~~~~ie~~G~~i~~DtC~-~v~ 347 (389)
T cd01355 279 PDLVVL-GCPHASLEELRKLADLL------AGRRVAPSVPLYVT-TSRAVY--AKRMGYVDVIEKLGARVLTDTCM-VVS 347 (389)
T ss_pred CCEEEe-cCCCCCHHHHHHHHHHh------cCCccCCCCCEEEE-ccHHHH--HhhccHHHHHHHcCCEEEeeecc-eee
Confidence 556777 68888899999999999 89877767766555 567777 88999999999999999997776 664
No 62
>COG0311 PDX2 Predicted glutamine amidotransferase involved in pyridoxine biosynthesis [Coenzyme metabolism]
Probab=38.09 E-value=35 Score=35.40 Aligned_cols=75 Identities=21% Similarity=0.148 Sum_probs=45.8
Q ss_pred ceeEEEecC--cHHHHHHHHHcCcHHHHHhcCcEEeccCCccccCCCCCCChhhhhhcccCceeEEEEeccCCCCCCCCC
Q 003793 367 WVKTSLAPG--SGVVTKYLQQSGLQKYLNQQGFHIVGYGCTTCIGNSGDLDESVATAITENDIVAAAVLSGNRNFEGRVH 444 (795)
Q Consensus 367 ~V~~~v~Pg--S~~V~~~l~~~Gl~~~l~~aG~~i~~~gCg~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g 444 (795)
.+...|.|| |..+.+-+.+.|+++.|.+.=.. .-|-=|+|.|+- -|..++.+.-...-+ .+-=-+-+||.-||+=
T Consensus 38 ~~d~LIiPGGESTTi~rL~~~~gl~e~l~~~~~~-G~Pv~GTCAGlI-lLakei~~~~~~~~L-g~mdi~V~RNAfGRQ~ 114 (194)
T COG0311 38 GVDGLIIPGGESTTIGRLLKRYGLLEPLREFIAD-GLPVFGTCAGLI-LLAKEILDGPEQPLL-GLLDVTVRRNAFGRQV 114 (194)
T ss_pred cCcEEEecCccHHHHHHHHHHcCcHHHHHHHHHc-CCceEEechhhh-hhhhhhcCCCCCccc-ceEEEEEEcccccccc
Confidence 467889999 77888999999999988765333 335557899872 122232210000111 1111255899999983
No 63
>PF00694 Aconitase_C: Aconitase C-terminal domain CAUTION: The Prosite patterns do not match this domain.; InterPro: IPR000573 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. 3-isopropylmalate dehydratase (or isopropylmalate isomerase; 4.2.1.33 from EC) catalyses the stereo-specific isomerisation of 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate. This enzyme performs the second step in the biosynthesis of leucine, and is present in most prokaryotes and many fungal species. The prokaryotic enzyme is a heterodimer composed of a large (LeuC) and small (LeuD) subunit, while the fungal form is a monomeric enzyme. Both forms of isopropylmalate are related and are part of the larger aconitase family []. Aconitases are mostly monomeric proteins which share four domains in common and contain a single, labile [4Fe-4S] cluster. Three structural domains (1, 2 and 3) are tightly packed around the iron-sulphur cluster, while a fourth domain (4) forms a deep active-site cleft. The prokaryotic enzyme is encoded by two adjacent genes, leuC and leuD, corresponding to aconitase domains 1-3 and 4 respectively [, ]. LeuC does not bind an iron-sulphur cluster. It is thought that some prokaryotic isopropylamalate dehydrogenases can also function as homoaconitase 4.2.1.36 from EC, converting cis-homoaconitate to homoisocitric acid in lysine biosynthesis []. Homoaconitase has been identified in higher fungi (mitochondria) and several archaea and one thermophilic species of bacteria, Thermus thermophilus []. This entry represents the 'swivel' domain found at the C-terminal of eukaryotic mAcn, cAcn/IPR1 and IRP2, and bacterial AcnA. This domain has a three layer beta/beta/alpha structure, and in cytosolic Acn is known to rotate between the cAcn and IRP1 forms of the enzyme. This domain is also found in the small subunit of isopropylmalate dehydratase (LeuD). More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0008152 metabolic process; PDB: 2PKP_A 2B3Y_A 2B3X_A 1V7L_B 1C97_A 1NIT_A 8ACN_A 1C96_A 1ACO_A 1NIS_A ....
Probab=31.68 E-value=24 Score=34.48 Aligned_cols=30 Identities=27% Similarity=0.450 Sum_probs=22.6
Q ss_pred eEEeecCCCCcccccccCCCCCCCChHhhHHHHcCCCccccc
Q 003793 567 YCLLNFGDSITTDHISPAGSIHKDSPAAKYLLERGVDRKDFN 608 (795)
Q Consensus 567 ~vL~~~gd~itTD~I~PaG~i~~~s~a~~~L~~~g~~~~~~n 608 (795)
...-.+.+|||||.|+| ++||.. +.+.++.
T Consensus 10 ~~~~~~~s~idtd~i~p----------~~~~~~--~~~~~l~ 39 (131)
T PF00694_consen 10 VAVPDFNSNIDTDQIIP----------AMFLGT--FANTGLG 39 (131)
T ss_dssp EEEEEHHSTGGGHHHSC----------GGHHHS--CGCTTTG
T ss_pred ccccccccccccccccH----------HHHhcc--ccCcchh
Confidence 34567889999999999 689874 5555554
No 64
>COG1833 Uri superfamily endonuclease [Replication, recombination, and repair]
Probab=30.70 E-value=68 Score=31.48 Aligned_cols=36 Identities=25% Similarity=0.418 Sum_probs=26.1
Q ss_pred eEEEecCcHHHHHHHHHcCcHHHHHhcCcEEeccCCccccCCC
Q 003793 369 KTSLAPGSGVVTKYLQQSGLQKYLNQQGFHIVGYGCTTCIGNS 411 (795)
Q Consensus 369 ~~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~i~~~gCg~CiG~~ 411 (795)
..++.| ...|..+-..|.+-+-.|.++||+-|---+
T Consensus 70 ~a~~~~-------~~~Ecela~~ls~~~~~I~gFG~SDc~cks 105 (132)
T COG1833 70 GAIIFP-------ERLECELARALSKNFEGIEGFGCSDCKCKS 105 (132)
T ss_pred EEEEec-------CchHHHHHHHHHhcCCccCCCCCCCCCCcc
Confidence 455666 233556677788889999999999987543
No 65
>TIGR00829 FRU PTS system, fructose-specific, IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Fru family is a large and complex family which includes several sequenced fructose and mannitol-specific permeases as well as several PTS components of unknown specificities. The fructose components of this family phosphorylate fructose on the 1-position. The Fru family PTS systems typically have 3 domains, IIA, IIB and IIC, which may be found as 1 or more proteins. The fructose and mannitol transporters form separate phylogenetic clusters in this family. This family is specific for the IIB domain of the fructose PTS transporters.
Probab=23.55 E-value=68 Score=28.89 Aligned_cols=31 Identities=32% Similarity=0.463 Sum_probs=25.6
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHHHhcCCccC
Q 003793 334 AITSCTNTSNPSVMLGAGLVAKKACELGLEVK 365 (795)
Q Consensus 334 ~IGSCTN~~~~dl~~aA~lLa~~a~~~G~kv~ 365 (795)
+|++|..|.-.- .+||+.|.+.|.+.|..++
T Consensus 2 ~vtacp~G~Aht-~lAae~L~~aA~~~G~~i~ 32 (85)
T TIGR00829 2 AVTACPTGIAHT-FMAAEALEKAAKKRGWEVK 32 (85)
T ss_pred EEecCCCcHHHH-HHHHHHHHHHHHHCCCeEE
Confidence 589999998766 4578888899999998776
Done!