Query 003793
Match_columns 795
No_of_seqs 315 out of 2616
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 04:13:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003793.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003793hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2b3y_A Iron-responsive element 100.0 3E-221 1E-225 1929.4 57.4 789 1-794 99-888 (888)
2 1c96_A Mitochondrial aconitase 100.0 1E-168 4E-173 1469.3 51.2 658 5-792 82-751 (753)
3 1l5j_A Aconitate hydratase 2; 100.0 1.9E-93 6.4E-98 838.4 35.4 387 1-508 421-837 (865)
4 2pkp_A Homoaconitase small sub 100.0 3.3E-39 1.1E-43 319.3 10.8 155 569-793 7-161 (170)
5 1v7l_A 3-isopropylmalate dehyd 100.0 6.6E-39 2.3E-43 314.9 7.2 152 569-793 7-159 (163)
6 2hcu_A 3-isopropylmalate dehyd 100.0 1.6E-38 5.6E-43 323.1 10.0 180 547-782 5-187 (213)
7 1l5j_A Aconitate hydratase 2; 100.0 1.1E-39 3.7E-44 383.8 -1.6 280 438-793 48-353 (865)
8 3vba_A Isopropylmalate/citrama 100.0 1.2E-37 3.9E-42 308.5 11.2 160 565-793 6-165 (176)
9 3q3w_A 3-isopropylmalate dehyd 100.0 1.3E-34 4.6E-39 291.6 7.6 164 564-782 10-177 (203)
10 3h5j_A 3-isopropylmalate dehyd 100.0 1.4E-33 4.7E-38 277.2 8.0 157 563-782 9-169 (171)
11 2r4q_A Phosphotransferase syst 32.4 37 0.0013 30.7 3.9 33 332-365 5-37 (106)
12 2r48_A Phosphotransferase syst 30.9 38 0.0013 30.7 3.7 33 332-365 5-37 (106)
13 2kyr_A Fructose-like phosphotr 21.0 47 0.0016 30.3 2.4 33 332-365 8-40 (111)
No 1
>2b3y_A Iron-responsive element binding protein 1; IRP1 IRE-IRP1 aconitase activity, lyase; 1.85A {Homo sapiens} SCOP: c.8.2.1 c.83.1.1 PDB: 2b3x_A 3snp_A 3sn2_A 2ipy_A
Probab=100.00 E-value=2.9e-221 Score=1929.38 Aligned_cols=789 Identities=62% Similarity=1.081 Sum_probs=749.2
Q ss_pred ChHHHHhcCCCCCccCCCCceEEEccCCcccCCCCchhHHHHhHHHHHHHhhhhhhhhhhhccccCcceeeCCCCceecc
Q 003793 1 MRDAMKNLNSDPKKINPLVPVDLVVDHSVQVDVARSENAVQANMEFEFQRNQERFAFLKWGSSAFHNMLVVPPGSGIVHQ 80 (795)
Q Consensus 1 ~r~~~~~~g~~~~~~~P~~pv~lv~DH~v~~~~~~~~~a~~~n~~~e~~rn~e~~~fl~~~~~~~~~~~~~~pg~GI~Hq 80 (795)
||++++++|.||+++||.+||++++||+||++..+..++..+|+.++|+||+|+|.||+|++++|.+|+|+|||+|||||
T Consensus 99 mr~a~~~~g~d~~ki~p~~pv~lv~DH~v~~~~~~~~da~~~n~~~e~~rN~e~~~fL~w~~~~f~~~~~~~pG~GI~Hq 178 (888)
T 2b3y_A 99 MRDAVKKLGGDPEKINPVCPADLVIDHSIQVDFNRRADSLQKNQDLEFERNRERFEFLKWGSQAFHNMRIIPPGSGIIHQ 178 (888)
T ss_dssp HHHHHHHTTCCGGGSSCSSCEEEECCSSCCCSSCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEEECTTSCCHHH
T ss_pred HHHHHHhcCCChhhcCCCCCeeEEeCCCCCcCCccccCHHHHHHHHHHHHhcchHHHHHHHHHhccCCCCCCCCCCCcce
Confidence 68899999999999999999999999999999988889999999999999999999999999999999999999999999
Q ss_pred cccccccceeecCCCccccCeEEecCCCCCccCccccccccccHHHHHHHHccCceeeeCCcEEEEEEeccCCCCCChhh
Q 003793 81 VNLEYLGRVVFNTDGILYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLTGKLRDGVTATD 160 (795)
Q Consensus 81 v~~E~~a~~v~~~~G~~~P~~ivGtDSHT~~~GalG~la~GvGg~e~~~~m~g~~~~~~vPevv~V~l~G~l~~gVtakD 160 (795)
|++||||++|+.++|+++|||||||||||||+||||+|||||||+|++++|+||++||++||+|+|+|+|+|++||||||
T Consensus 179 v~lE~la~~v~~~~G~~~P~tlVGtDSHT~t~GglG~la~GVGg~eae~~mag~~~~~~~PevvgV~ltG~L~~gVtakD 258 (888)
T 2b3y_A 179 VNLEYLARVVFDQDGYYYPDSLVGTDSHTTMIDGLGILGWGVGGIEAEAVMLGQPISMVLPQVIGYRLMGKPHPLVTSTD 258 (888)
T ss_dssp HHHHTTCCSEEEETTEEEECEEEESSGGGGGGGGGTCEEEECCHHHHHHHHTTCCEEEECCCEEEEEEESCCCTTCCHHH
T ss_pred ehhhhccccccccCcccccCeEEecCCCccccCcceeEEEccCHHHHHHHHhcCcEeecCCCEEEEEEEccCCCCcchhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCccceEEEEecCcCCCCCcccchhhcccccccCceeeeeeCChHHHHHHHhcCCChhhHHHHHHHHHH
Q 003793 161 LVLTVTQMLRKHGVVGKFVEFYGEGMGQLPLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVSMIEEYLRA 240 (795)
Q Consensus 161 viL~i~~~l~~~G~~g~~vEf~G~gv~~Ls~~~R~TI~NMa~E~GA~~~~fp~D~~t~~yL~~~gr~~~~~~~~~~y~~~ 240 (795)
|||+|+++|+++|++||+|||+||||++||+++|||||||++|+|||+|+||+|++|++||+.+||++++++++++|+++
T Consensus 259 viL~i~~~l~~~G~vGk~vEF~G~gv~~LS~~~R~TI~NMa~E~GAt~g~fp~De~T~~YL~~~gr~~~~~~~~e~y~~a 338 (888)
T 2b3y_A 259 IVLTITKHLRQVGVVGKFVEFFGPGVAQLSIADRATIANMCPEYGATAAFFPVDEVSITYLVQTGRDEEKLKYIKKYLQA 338 (888)
T ss_dssp HHHHHHHHHHHHCCTTCEEEEESGGGTTSCHHHHHHHHHTHHHHTCSEEECCCCHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCccceEEEEecCccccccccchhhhhhcchhhCCeeEEecCcHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888999999999
Q ss_pred hhhcccCCCCC-CCCccceEEEEECCCccceeecCCCCCCccccCCcchhhHHhhhccccccCCCCCccccccccccccC
Q 003793 241 NKMFVDYNEPE-QERSYSSYLQLDLADVEPCISGPKRPHDRVPLKDMKADWHACLENQVGFKGFAVPKQEQDKVAKFSFH 319 (795)
Q Consensus 241 ~~l~~~~~~~D-~~a~Y~~vieiDLs~leP~VA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 319 (795)
+++|++. .+| ++|.|+++++||||+|+|+||||++|||++||++++++|.+++..+++++|+..+.....+..+++|+
T Consensus 339 ~~l~~~l-~~d~~dA~Yd~~ieiDLs~leP~VAgP~~P~~~~plse~~~~~~~~l~~~~g~~g~~~~~~~~~~~~~~~~~ 417 (888)
T 2b3y_A 339 VGMFRDF-NDPSQDPDFTQVVELDLKTVVPCCSGPKRPQDKVAVSDMKKDFESCLGAKQGFKGFQVAPEHHNDHKTFIYD 417 (888)
T ss_dssp HTCCCCT-TCGGGCCCCSEEEEEEGGGCCSEEECSSCTTCEEEGGGHHHHHHHHHHSCSBTTBCCCCGGGTTCEEEEEET
T ss_pred HHHHhcc-CCCCCCCceEEEEEEEhhheeEeecCCCCcccccChHHhhhhHHHhhhcccccccccccchhhcccceeecC
Confidence 9999753 234 89999999999999999999999999999999999999988776544333331110100011346788
Q ss_pred CCcccccCccEEEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCccCCceeEEEecCcHHHHHHHHHcCcHHHHHhcCcEE
Q 003793 320 GQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLEVKPWVKTSLAPGSGVVTKYLQQSGLQKYLNQQGFHI 399 (795)
Q Consensus 320 g~~~~l~~g~V~~a~IGSCTN~~~~dl~~aA~lLa~~a~~~G~kv~~~V~~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~i 399 (795)
|+++.|.||+|++|||||||||||||+|+||++|||+|+++|+||+||||++|+|||++|++||+++||+++|+++||+|
T Consensus 418 g~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~lLak~A~~kG~kv~p~Vk~~v~PGS~~V~~~l~~~Gl~~~l~~aGf~i 497 (888)
T 2b3y_A 418 NTEFTLAHGSVVIAAITSCTNTSNPSVMLGAGLLAKKAVDAGLNVMPYIKTSLSPGSGVVTYYLQESGVMPYLSQLGFDV 497 (888)
T ss_dssp TEEEEEETTBEEEEEECCHHHHTCHHHHHHHHHHHHHHHHTTCCCCTTSEEEECCSSHHHHHHHHHTSCHHHHHHTTCCB
T ss_pred CccccccCCcEEEEEEecCCCCCcHHHHHHHHHHHHHHHhcCCCCCCCceEEEeCCCHHHHHHHHHcCcHHHHHHcCCEE
Confidence 99889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCccccCCCCCCChhhhhhcccCceeEEEEeccCCCCCCCCCCccCCceecChHHHHHHHhccccccCCCCCCCcCC
Q 003793 400 VGYGCTTCIGNSGDLDESVATAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVDIDFEKEPIGTG 479 (795)
Q Consensus 400 ~~~gCg~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~yLaSP~~vaA~AlaG~I~~d~~~~plg~~ 479 (795)
++||||+|+||++++.++++.+|++||+++++|||+||||+||||+..+++|||||+|||||||+|+|++|+++||++.+
T Consensus 498 ~~~GC~~CiG~~~~l~~~~~~~i~~ge~~~~~vsS~NRNFeGR~g~~~~~~yLaSP~lvaA~AiaG~i~~d~~~dpl~~~ 577 (888)
T 2b3y_A 498 VGYGCMTCIGNSGPLPEPVVEAITQGDLVAVGVLSGNRNFEGRVHPNTRANYLASPPLVIAYAIAGTIRIDFEKEPLGVN 577 (888)
T ss_dssp CCSSCGGGGTCCCCCCHHHHHHHHHHTCCCEEEESSSCCCTTSSCTTCSEEEECCHHHHHHHHHHCBSCCCTTTSCSEEE
T ss_pred eCCCCcceeCCCCCCCchhhhhhccCCeeEEEEeccCCCcCcCCCCCccccEecCHHHHHHHHhcCeeecccccCccccC
Confidence 99999999999999999999999999998899999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccccCCCChHHHHHHhhccCCcchhhhccccccCCCcccccccCCCCCccccCCCCccccCCCCCCCCCCCCCC
Q 003793 480 KDGKGVYFKDIWPSNEEIAEVVQSSVLPDMFKSTYEAITKGNPMWNQLSVPTSTLYSWDPNSTYIHEPPYFKNMTMEPPG 559 (795)
Q Consensus 480 ~~G~~v~l~di~P~~~ei~~~~~~~v~p~~~~~~y~~~~~~~~~w~~l~~~~~~~~~w~~~st~i~~pp~f~~~~~~~~~ 559 (795)
++|+++||+||||+.+|+++++...+++++|.+.|..++.+++.|+.++++.++.|+|+++||||++||||++++..+++
T Consensus 578 ~~G~~v~l~diwP~~~ei~~~~~~~~~~~~f~~~y~~~~~~~~~~~~~~~~~~~~~~w~~~St~i~~~p~f~~~~~~~~~ 657 (888)
T 2b3y_A 578 AKGQQVFLKDIWPTRDEIQAVERQYVIPGMFKEVYQKIETVNESWNALATPSDKLFFWNSKSTYIKSPPFFENLTLDLQP 657 (888)
T ss_dssp TTTEEECHHHHCCCHHHHHHHHHHHCCHHHHHHHHTTTTTCCHHHHHCCCCCCSSCCCCTTCSSCCCCGGGTTCCSSCCC
T ss_pred CCCCcccccccCCchhhhHHHHHhcCCHHHhhhhhccccCCccccccCCCCCCCccccCCCcccccCCCCccccccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888888
Q ss_pred CCCCccceEEeecCCCCcccccccCCCCCCCChHhhHHHHcCCCccccccccCCCCChhhcccccccchhhhhhhcCCCC
Q 003793 560 PHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLLERGVDRKDFNSYGSRRGNDEVMARGTFANIRIVNKLLNGEV 639 (795)
Q Consensus 560 ~~~i~~a~vL~~~gd~itTD~I~PaG~i~~~s~a~~~L~~~g~~~~~~n~yg~rr~n~evm~rg~F~n~r~~n~~~~~~~ 639 (795)
++++.++++|+++|||||||||||||+|+++||||+||+++|+++++|||||+||||||||+||+|+|||+.|+|.+ .+
T Consensus 658 ~~~~~~~~~l~~~gdnitTDhIsPAg~i~~~s~ag~~L~~~gv~~~~f~syg~rRgn~~vm~rg~F~n~r~~n~l~~-~~ 736 (888)
T 2b3y_A 658 PKSIVDAYVLLNLGDSVTTDHISPAGNIARNSPAARYLTNRGLTPREFNSYGSRRGNDAVMARGTFANIRLLNRFLN-KQ 736 (888)
T ss_dssp CCCEEEEEEEEEBCSCCBHHHHSCCSCCCSSSHHHHHHHHTTCCGGGCCCTGGGTTCHHHHHHTTTCCTTCEETTTT-EE
T ss_pred cccccCcEEEEEecCCccccccccCccccCCCHHHHHHHhcCCChHHhccccccccCHHHHhhhccccccccccccc-cc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999986 89
Q ss_pred CCceeecCCCcccccccHHHHHHHcCCceEEEeCCccCCCCchhhhhhhhhhcCeeEEEecchhHHHhhhhccCcccccc
Q 003793 640 GPKTVHIPTGEKLYVFDAAMRYKAAGHETIVLAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLC 719 (795)
Q Consensus 640 g~~t~~~p~~~~~~v~~~a~~y~~~g~~~iiVaG~NfG~GSSRE~Aa~a~~~lGv~aVIA~SFarI~~~Nlin~Gilpl~ 719 (795)
|++|+++|+|+.+++||+|++|+++|.++|||||+|||||||||||+|+++++||+||||+||+||||+||+|||||||+
T Consensus 737 g~~t~~~p~g~~~~~~d~a~~y~~~g~~~iivaG~nfG~GSSREhAa~a~~~~Gi~aVIA~SFarIf~~Nli~~Gllpl~ 816 (888)
T 2b3y_A 737 APQTIHLPSGEILDVFDAAERYQQAGLPLIVLAGKEYGAGSSRDWAAKGPFLLGIKAVLAESYERIHRSNLVGMGVIPLE 816 (888)
T ss_dssp CSEEEETTTTEEEEHHHHHHHHHHTTCCEEEECCSSBTBSCCCTHHHHHHHHTTEEEEEESCBCHHHHHHHHHHTCEEEE
T ss_pred CCceeecCCCccccchhhHHHHHhcCCceEEECCCCCCCCccHHHHHHHHHHcCeeEEEEhhHHHHHHhhhhhcCCceEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccchhhcccCCCceEEEecCCccccCCCCceEEEEcCCCeEEEEEecCCCHHHHHHHHhcChHHHHHHHhhc
Q 003793 720 FKPGEDADTLGLAGHERYTINLPNKVSEIRPGQDITVTTDTGKSFTCTVRFDTEVELAYFDHGGILPYVIRNLIK 794 (795)
Q Consensus 720 ~~~~~~~~~l~~~~~~~~~idl~~~~~~~~~g~~v~v~~~~g~~~~~~~~~~~~~e~~~~~aGGll~~v~~~~~~ 794 (795)
|+++++++.+.+.++++++|++.+ .++||+.++++..+|++|.++++++++.|++||++||+|||+++++++
T Consensus 817 ~~~~~~~~~~~~~~~~~i~i~l~~---~~~~g~~v~v~~~~G~~~~~~~~~~t~~e~~~~~aGGiL~yv~~~~~~ 888 (888)
T 2b3y_A 817 YLPGENADALGLTGQERYTIIIPE---NLKPQMKVQVKLDTGKTFQAVMRFDTDVELTYFLNGGILNYMIRKMAK 888 (888)
T ss_dssp ECTTCCHHHHTCCSCSCEEECCCS---SCCTTCEEEEEETTSCEEEEEECCCSHHHHHHHHHTSHHHHHHHHHHC
T ss_pred ecccccHHHhccCCCceEEEEccc---ccCCCcEEEEEeCCCeEEEEEecCCCHHHHHHHHcCCHHHHHHHHhhC
Confidence 999999998888888999999764 488998777654678999999999999999999999999999999864
No 2
>1c96_A Mitochondrial aconitase; lyase, tricarboxylic acid cycle, iron-sulfur, mitochondrion, transit peptide, 4Fe-4S, 3D-structure; HET: FLC; 1.81A {Bos taurus} SCOP: c.8.2.1 c.83.1.1 PDB: 1c97_A* 1b0k_A* 1b0j_A* 7acn_A* 6acn_A* 5acn_A* 1b0m_A* 1ami_A* 1amj_A 8acn_A* 1fgh_A* 1aco_A* 1nis_A* 1nit_A
Probab=100.00 E-value=1.2e-168 Score=1469.27 Aligned_cols=658 Identities=30% Similarity=0.473 Sum_probs=569.9
Q ss_pred HHhcCCCCCccCCCCceEEEccCCcccCCCCchhHHHHhHHHHHHHhhhhhhhhhhhccccCcceeeCCCCceecccccc
Q 003793 5 MKNLNSDPKKINPLVPVDLVVDHSVQVDVARSENAVQANMEFEFQRNQERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLE 84 (795)
Q Consensus 5 ~~~~g~~~~~~~P~~pv~lv~DH~v~~~~~~~~~a~~~n~~~e~~rn~e~~~fl~~~~~~~~~~~~~~pg~GI~Hqv~~E 84 (795)
++.+|.++ |..|.++++||++|++..++. ++..++.+|.|+|.|++|.+++| ||+|+|||+||||||++|
T Consensus 82 l~~~G~~~----v~~P~~~~~DH~v~~~~~~~~-----d~~~~~~~n~e~~~~l~~~a~~~-gi~~~~pg~GI~Hqv~~E 151 (753)
T 1c96_A 82 FISSGLPK----VAVPSTIHCDHLIEAQLGGEK-----DLRRAKDINQEVYNFLATAGAKY-GVGFWRPGSGIIHQIILE 151 (753)
T ss_dssp HHHHTCSS----CSSCEEEECCSSCCBSSCHHH-----HHHHHHHHTHHHHHHHHHHHHHH-TCEEECTTSBCHHHHHHH
T ss_pred HHHhCCCC----CCCCCceecCCCCCCCCCccc-----chhhhhhhHHHHHHHHHHHHHHC-CCEEECCCCCeeCeEecc
Confidence 55678774 445667899999999865432 35678999999999999999999 899999999999999999
Q ss_pred cccceeecCCCccccC-eEEecCCCCCccCccccccccccHHHHHHHHccCceeeeCCcEEEEEEeccCCCCCChhhHHH
Q 003793 85 YLGRVVFNTDGILYPD-SVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLTGKLRDGVTATDLVL 163 (795)
Q Consensus 85 ~~a~~v~~~~G~~~P~-~ivGtDSHT~~~GalG~la~GvGg~e~~~~m~g~~~~~~vPevv~V~l~G~l~~gVtakDviL 163 (795)
+ +++|+ ++|||||||||+||||+||||||++|++++|+||+|||++||+|+|+|+|+|++|||||||||
T Consensus 152 ~----------~~~Pg~~ivGtDSHT~t~GalG~la~GvG~~e~~~vmagq~~~~~~P~vv~V~l~G~L~~gVtakDviL 221 (753)
T 1c96_A 152 N----------YAYPGVLLIGTDSHTPNGGGLGGICIGVGGADAVDVMAGIPWELKCPKVIGVKLTGSLSGWTSPKDVIL 221 (753)
T ss_dssp H----------TCCTTCEEEESSTTGGGGGGGTCEEEECCHHHHHHHHHTCCEEEECCEEEEEEEESCCCTTCCHHHHHH
T ss_pred c----------ccCCCcEEecCCCCCCccchhhhheeccCHHHHHHHHhCCeeeccCCcEEEEEEeeecCCCccHHHHHH
Confidence 5 55786 799999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCccceEEEEecCcCCCCCcccchhhcccccccCceeeeeeCChHHHHHHHhcCCChhhHHHHHHHHHHhhh
Q 003793 164 TVTQMLRKHGVVGKFVEFYGEGMGQLPLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVSMIEEYLRANKM 243 (795)
Q Consensus 164 ~i~~~l~~~G~~g~~vEf~G~gv~~Ls~~~R~TI~NMa~E~GA~~~~fp~D~~t~~yL~~~gr~~~~~~~~~~y~~~~~l 243 (795)
+|+++|+++|++||+|||+||||++||+++|||||||++|+|||+|+||+|++|++||+.++|.+ .++++++|++ +
T Consensus 222 ~ii~~l~~~G~~g~~vEf~G~gv~~LS~~~R~TI~NMa~E~GA~~gifp~De~T~~YL~~~gr~~-~~~~~~~y~~---~ 297 (753)
T 1c96_A 222 KVAGILTVKGGTGAIVEYHGPGVDSISCTGMATICNMGAEIGATTSVFPYNHRMKKYLSKTGRAD-IANLADEFKD---H 297 (753)
T ss_dssp HHHHHHTTTTTTTEEEEEESGGGGGSCHHHHHHHHHHGGGGTCSEEECCCCHHHHHHHHHTTCHH-HHHHHHHTGG---G
T ss_pred HHHHHhccCCcceEEEEEECCccccCCcchhhhhhccchhhCcccccccCcHHHHHHHHhcCCcH-HHHHHHHHHh---h
Confidence 99999999999999999999999999999999999999999999999999999999999999877 4667777655 3
Q ss_pred cccCCCCCCCCccceEEEEECCCccceeecCCCCCCccccCCcchhhHHhhhccccccCCCCCccccccccccccCCCcc
Q 003793 244 FVDYNEPEQERSYSSYLQLDLADVEPCISGPKRPHDRVPLKDMKADWHACLENQVGFKGFAVPKQEQDKVAKFSFHGQPA 323 (795)
Q Consensus 244 ~~~~~~~D~~a~Y~~vieiDLs~leP~VA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~ 323 (795)
| .+|++|.|+++++||||+|+|+||||++|+|++||+++...+++ ++++
T Consensus 298 l----~~D~~A~Yd~~ieiDls~leP~va~P~~P~~~~~v~e~~~~~~~--------------------------~~~~- 346 (753)
T 1c96_A 298 L----VPDPGCHYDQVIEINLSELKPHINGPFTPDLAHPVAEVGSVAEK--------------------------EGWP- 346 (753)
T ss_dssp S----SCCTTCCCSEEEEEEGGGCCCEEECSSSTTCEEEHHHHHHHHHH--------------------------HTCC-
T ss_pred c----cCCCCCceeEEEEEEccccceeecCCCCCcceeEhHHhhhhHhh--------------------------cCCc-
Confidence 4 57999999999999999999999999999999999998864432 0111
Q ss_pred cccCccEEEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCccCCceeEEEecCcHHHHHHHHHcCcHHHHHhcCcEEeccC
Q 003793 324 ELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLEVKPWVKTSLAPGSGVVTKYLQQSGLQKYLNQQGFHIVGYG 403 (795)
Q Consensus 324 ~l~~g~V~~a~IGSCTN~~~~dl~~aA~lLa~~a~~~G~kv~~~V~~~v~PgS~~V~~~l~~~Gl~~~l~~aG~~i~~~g 403 (795)
-+|++||||||||||++||+.|| .|+|+|+++|+ +++||++|+|||++|++||+++||+++|+++||+|++||
T Consensus 347 ----~~Vd~~~IGSCTN~~~~Dl~~AA-~ilkga~~~~v--~~~V~~~v~PgS~~V~~~~~~~Gl~~~l~~aG~~i~~~g 419 (753)
T 1c96_A 347 ----LDIRVGLIGSCTNSSYEDMGRSA-AVAKQALAHGL--KCKSQFTITPGSEQIRATIERDGYAQVLRDVGGIVLANA 419 (753)
T ss_dssp ----CBEEEEEEBTTTBCSHHHHHHHH-HHHHHHHTTTC--CCSSEEEECCSBHHHHHHHHHTTHHHHHHHTTEEECCSS
T ss_pred ----cceEEEEEecCCCCCHHHHHHHH-HHhccHhhcCC--CCCceEEEeCCCHHHHHHHHHcCcHHHHHHcCcEEecCC
Confidence 15889999999999999966655 55678877665 556999999999999999999999999999999999999
Q ss_pred CccccCCCCCCChhhhhhcccCceeEEEEeccCCCCCCCCC-CccCCceecChHHHHHHHhccccccCCCCCCCcCCCCC
Q 003793 404 CTTCIGNSGDLDESVATAITENDIVAAAVLSGNRNFEGRVH-PLTRANYLASPPLVVAYALAGTVDIDFEKEPIGTGKDG 482 (795)
Q Consensus 404 Cg~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g-~~~~~~yLaSP~~vaA~AlaG~I~~d~~~~plg~~~~G 482 (795)
||+|+||+++.. + ..++- .++|||+||||+|||| +..+.+|||||+|||||||+|+|++|+.+||+ .+++|
T Consensus 420 Cg~CiG~~~~~~--~----~~~~~-~~~vsT~NRNF~GR~gG~p~~~~yLaSP~~vaA~AiaG~i~~d~~~d~l-~~~~g 491 (753)
T 1c96_A 420 CGPCIGQWDRKD--I----KKGEK-NTIVTSYNRNFTGRNDANPETHAFVTSPEIVTALAIAGTLKFNPETDFL-TGKDG 491 (753)
T ss_dssp CGGGGTCBCCCS--S----CTTCC-EEEEESSSCCCTTTTTSCTTEEEEECCHHHHHHHHHHCBTTCCTTTCCC-CCSSC
T ss_pred ceeeecCCCCcc--c----ccCCc-ceEEecccCCcccccCCCCCCceeecCHHHHHHHHHcCCcccCcccccc-cCCCC
Confidence 999999997632 1 11111 1479999999999994 55577999999999999999999999999999 88999
Q ss_pred CccccccCCCChHHHHHHhhccCCcchhhhccccccCCCcccccccCCC-CCccccCCCCccccCCCCCCCCCCCCCCCC
Q 003793 483 KGVYFKDIWPSNEEIAEVVQSSVLPDMFKSTYEAITKGNPMWNQLSVPT-STLYSWDPNSTYIHEPPYFKNMTMEPPGPH 561 (795)
Q Consensus 483 ~~v~l~di~P~~~ei~~~~~~~v~p~~~~~~y~~~~~~~~~w~~l~~~~-~~~~~w~~~st~i~~pp~f~~~~~~~~~~~ 561 (795)
+++||+| |+.+|+++ .+|. .+++.|+....+. +..|.|+++|+|++.||+|++. +..
T Consensus 492 ~~v~l~~--p~~~e~~~--------~~f~-------~~~~~~~~~~~~~~~~~~~~~p~s~~~~~~~~f~~~-----~~~ 549 (753)
T 1c96_A 492 KKFKLEA--PDADELPR--------AEFD-------PGQDTYQHPPKDSSGQRVAVSPTSQRLQLLEPFDKW-----DGK 549 (753)
T ss_dssp CCCCCCC--CCCCSSCS--------SCCC-------CCSCCEECCCSCCTTCCCCCCTTCSSBCCCCCCCCC-----CSS
T ss_pred CeeeecC--Cccchhhh--------hhcc-------CCccccccCCCCCCcceEeeCCCCccccCCCCCCCC-----Ccc
Confidence 9999999 88887532 2232 3567788776554 5689999999999999999753 446
Q ss_pred CCccceEEeecCCCCcccccccCCCCCCCChHhhHHHHcCCCccccccccCCCCChhhcccccccchhhhhhhcC--CCC
Q 003793 562 GVKDAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLLERGVDRKDFNSYGSRRGNDEVMARGTFANIRIVNKLLN--GEV 639 (795)
Q Consensus 562 ~i~~a~vL~~~gd~itTD~I~PaG~i~~~s~a~~~L~~~g~~~~~~n~yg~rr~n~evm~rg~F~n~r~~n~~~~--~~~ 639 (795)
++.++++|+++||+|||||||||| +||++ ||+|+|++ .|.|.. +.+
T Consensus 550 ~~~~~~vL~klgd~iTTDhIsPAG---------~~L~~----------------------rg~f~ni~-~n~l~~~~~~~ 597 (753)
T 1c96_A 550 DLEDLQILIKVKGKCTTDHISAAG---------PWLKF----------------------RGHLDNIS-NNLLIGAINIE 597 (753)
T ss_dssp CEEEEEEEEEBCSCCBHHHHBCCG---------GGGGG----------------------TBCHHHHG-GGBTTTSBBTT
T ss_pred ccccceEEEeccCCcccccccccc---------hhhcc----------------------ccchhhhh-hhhcccccccc
Confidence 899999999999999999999986 69986 46888888 666643 223
Q ss_pred CC---ceeecCCCcccccccHHHHHHHcCCceEEEeCCccCCCCchhhhhhhhhhcCeeEEEecchhHHHhhhhccCccc
Q 003793 640 GP---KTVHIPTGEKLYVFDAAMRYKAAGHETIVLAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGII 716 (795)
Q Consensus 640 g~---~t~~~p~~~~~~v~~~a~~y~~~g~~~iiVaG~NfG~GSSRE~Aa~a~~~lGv~aVIA~SFarI~~~Nlin~Gil 716 (795)
++ ++++.|+++.+.++|+|++|+++|.++|||||+|||||||||||||+++++||+||||+||+||||+||+|||||
T Consensus 598 ~g~~~~~~~~~~~~~~~~~d~a~~y~~~g~~~iivag~n~G~GSSRe~Aa~~~~~~Gi~avIa~sfarI~~~N~i~~Gll 677 (753)
T 1c96_A 598 NRKANSVRNAVTQEFGPVPDTARYYKQHGIRWVVIGDENYGEGASREHSALEPRHLGGRAIITKSFARIHETNLKKQGLL 677 (753)
T ss_dssp TCCBSCEECTTTCCEECHHHHHHHHHHHTCCEEEECCSSBTBSCCCTHHHHHHHHTTEEEEEESCBCHHHHHHHHHTTCE
T ss_pred CCCcceeEEecCCcccccHHHHHHHHHhCCCeEEEecCcCCCCcchHHHHhhHHHcCeeEEEehhHHHHHHhhhhhcCCc
Confidence 33 889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCccchhhcccCCCceEEEecCCccccCCCCceEEE--EcCCCeEEEEE--ecCCCHHHHHHHHhcChHHHHHHHh
Q 003793 717 PLCFKPGEDADTLGLAGHERYTINLPNKVSEIRPGQDITV--TTDTGKSFTCT--VRFDTEVELAYFDHGGILPYVIRNL 792 (795)
Q Consensus 717 pl~~~~~~~~~~l~~~~~~~~~idl~~~~~~~~~g~~v~v--~~~~g~~~~~~--~~~~~~~e~~~~~aGGll~~v~~~~ 792 (795)
||+|+++++++.| +++|+++|+. +.++.+|+.+++ +..+|+++.+. ++ +++.|++||++||+|||++++.
T Consensus 678 pl~~~~~~~~~~l--~~gd~i~I~g---l~~l~~g~~v~~~i~~~~g~~~~~~~~~~-~t~~e~~~~~aGGlLnyvk~~~ 751 (753)
T 1c96_A 678 PLTFADPADYNKI--HPVDKLTIQG---LKDFAPGKPLKCIIKHPNGTQETILLNHT-FNETQIEWFRAGSALNRMKELQ 751 (753)
T ss_dssp EEEESSGGGGGGC--CTTCEEEEEC---GGGCCTTCCEEEEEECTTSCEEEEEEECC-CCHHHHHHHHHTSHHHHHHHHS
T ss_pred ceeecCcchhhhc--CCCCEEEEcC---hHHcCCCceEEEEEEecCCcEEEEEEeCC-CCHHHHHHHHcCCHHHHHHHhh
Confidence 9999988888864 6788999872 235788876654 45567555544 44 4999999999999999999863
No 3
>1l5j_A Aconitate hydratase 2; molecular recognition, RNA binding, citric acid cycle, heat- like domain, lyase; HET: TRA; 2.40A {Escherichia coli} SCOP: a.118.15.1 c.8.2.1 c.83.1.1
Probab=100.00 E-value=1.9e-93 Score=838.41 Aligned_cols=387 Identities=24% Similarity=0.370 Sum_probs=337.2
Q ss_pred ChHHHHhcCCCCCccCCCCceEEEccCCcccCCCCchhHHHHhHHHHHHHhhhhhhhhhhhccccCcceeeCCCCceecc
Q 003793 1 MRDAMKNLNSDPKKINPLVPVDLVVDHSVQVDVARSENAVQANMEFEFQRNQERFAFLKWGSSAFHNMLVVPPGSGIVHQ 80 (795)
Q Consensus 1 ~r~~~~~~g~~~~~~~P~~pv~lv~DH~v~~~~~~~~~a~~~n~~~e~~rn~e~~~fl~~~~~~~~~~~~~~pg~GI~Hq 80 (795)
||++++++|.+ +++|.. |..++||.++.+. +...++.||.++|.+.+|+ .++|||+|||||
T Consensus 421 ~~~~~~~lg~~--~~~~d~-vv~~~dh~~~~~~---------~~~~e~~~~~~~Fa~~~g~-------~~~~pg~GI~Hq 481 (865)
T 1l5j_A 421 TRDELKDLACL--GFSADL-VMQSFCHTAAYPK---------PVDVNTHHTLPDFIMNRGG-------VSLRPGDGVIHS 481 (865)
T ss_dssp HHHHHHHTTCC--SCCSSC-EEECCCSSSSSCC---------HHHHHHHHHHHHHHHTTTC-------EECCTTSBCHHH
T ss_pred HHHHHHHcCCC--cCCCCe-EEEECCCCCcCCC---------HHHHHHHHHHHHHHHHcCC-------eEeCCCCceeee
Confidence 58999999965 688987 7789999988753 2345667888888777764 468999999999
Q ss_pred cccccccceeecCCCccccC-eEEecCCCCCccCccccccccccHHHHHHHHccCceeeeCCcEEEEEEeccCCCCCChh
Q 003793 81 VNLEYLGRVVFNTDGILYPD-SVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLTGKLRDGVTAT 159 (795)
Q Consensus 81 v~~E~~a~~v~~~~G~~~P~-~ivGtDSHT~~~GalG~la~GvGg~e~~~~m~g~~~~~~vPevv~V~l~G~l~~gVtak 159 (795)
++.| +++|+ ++|||||||||+||+ |+|.|++|++.+|++|++|+++||+|+|+|+|+|++|||+|
T Consensus 482 ~l~~-----------~~~PG~~ivGtDSHT~~~~Gl---g~g~G~g~vA~a~atG~~~~~vPevv~V~l~G~L~~gVtaK 547 (865)
T 1l5j_A 482 WLNR-----------MLLPDTVGTGGDSHTRFPIGI---SFPAGSGLVAFAAATGVMPLDMPESVLVRFKGKMQPGITLR 547 (865)
T ss_dssp HHGG-----------GCCTTCEEEESSTTCCCSSSE---ECCCCHHHHHHHHHHSBCCEECCCEEEEEEESCCCTTCCHH
T ss_pred eecc-----------cccccceEEeCCCCccccccc---eeCccHHHHHHHHHcCceeecCCCEEEEEEEeeCCCCCChH
Confidence 8643 67886 569999999999975 45779999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhc------------CccceEEEEecCcCCCCCcccchhhcccccccCceeeeeeCC-hHHHHHHHh---
Q 003793 160 DLVLTVTQMLRKH------------GVVGKFVEFYGEGMGQLPLADRATIANMSPEYGATMGFFPVD-HVTLQYLKL--- 223 (795)
Q Consensus 160 DviL~i~~~l~~~------------G~~g~~vEf~G~gv~~Ls~~~R~TI~NMa~E~GA~~~~fp~D-~~t~~yL~~--- 223 (795)
||||+|++.+.++ +++||+||| +||++||+++|||||||++|+||++|+||+| ++|++||+.
T Consensus 548 DvIL~i~~~~i~~G~l~v~k~g~~~~~~G~~vEf--~Gv~~LS~~~R~TI~NMa~E~GA~~g~f~~dDe~t~~YL~~~~~ 625 (865)
T 1l5j_A 548 DLVHAIPLYAIKQGLLTVEKKGKKNIFSGRILEI--EGLPDLKVEQAFELTDASAERSAAGCTIKLNKEPIIEYLNSNIV 625 (865)
T ss_dssp HHHHHHHHHHHHTTSBCSCSTTCCBTTTTSEEEE--ESCTTCCHHHHHHHHHGGGTTTCSEEEECCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccccCcccceeeEEEEE--cccccCChhhhhhHhhcchhcCCeeEEEeCCHHHHHHHHHhhhh
Confidence 9999999887632 347999999 5799999999999999999999999999976 788999998
Q ss_pred -------cCCC-----hhhHHHHHHHHHHhhhcccCCCCCCCCccceEEEEECCCc-cceeecCCCCCCccccCCcchhh
Q 003793 224 -------TGRS-----DETVSMIEEYLRANKMFVDYNEPEQERSYSSYLQLDLADV-EPCISGPKRPHDRVPLKDMKADW 290 (795)
Q Consensus 224 -------~gr~-----~~~~~~~~~y~~~~~l~~~~~~~D~~a~Y~~vieiDLs~l-eP~VA~P~~P~~~~~v~e~~~~~ 290 (795)
+||. +++.+.+++|++++++| .+|++|.|+++++||||+| ||+||+|++|||++|++++++
T Consensus 626 ~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~l----~~D~dA~Y~~~ieiDLs~l~eP~VA~P~~Pd~~~~vse~~~-- 699 (865)
T 1l5j_A 626 LLKWMIAEGYGDRRTLERRIQGMEKWLANPELL----EADADAEYAAVIDIDLADIKEPILCAPNDPDDARPLSAVQG-- 699 (865)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHSCCCC----CCCTTCCCSEEEEEEGGGCCSCEEECTTCTTCEEEGGGTTT--
T ss_pred hhhhhhccCCccchhHHHHHHHHHHHHhcccee----ccCCCCcEEEEEEEEcccCCCCEecCCCChHhccchhhhcc--
Confidence 6764 34567788899988888 5799999999999999999 899999999999999999862
Q ss_pred HHhhhccccccCCCCCccccccccccccCCCcccccCccEEEEEEecCCCCCCHHHHHHHHHHHHHHHhcCCccCCceeE
Q 003793 291 HACLENQVGFKGFAVPKQEQDKVAKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLEVKPWVKT 370 (795)
Q Consensus 291 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IGSCTN~~~~dl~~aA~lLa~~a~~~G~kv~~~V~~ 370 (795)
. .|+++|||||||+ ++||+.||.+| ||+++++.|++
T Consensus 700 ------------~-------------------------~Id~v~IGSCTtn-~eDl~~AA~il------kg~~v~~~v~~ 735 (865)
T 1l5j_A 700 ------------E-------------------------KIDEVFIGSCMTN-IGHFRAAGKLL------DAHKGQLPTRL 735 (865)
T ss_dssp ------------C-------------------------BCCEEEECSTTCC-HHHHHHHHHHH------HHSCSCCSSEE
T ss_pred ------------c-------------------------ccceEEEecCCCC-HHHHHHHHHHH------cCcccCCCCCE
Confidence 0 2458999999877 99999999998 88899999999
Q ss_pred EEecCcHHHHHHHHHcCcHHHHHhcCcEEeccCCccccCCCCCCChhhhhhcccCceeEEEEeccCCCCCCCCCCccCCc
Q 003793 371 SLAPGSGVVTKYLQQSGLQKYLNQQGFHIVGYGCTTCIGNSGDLDESVATAITENDIVAAAVLSGNRNFEGRVHPLTRAN 450 (795)
Q Consensus 371 ~v~PgS~~V~~~l~~~Gl~~~l~~aG~~i~~~gCg~CiG~~g~l~~~~~~~i~~~~~~~~~vsS~NRNF~GR~g~~~~~~ 450 (795)
+|+|||++|+++|+++|++++|.++||+|++||||+|+||++.+ .+|++ ++||+||||+||||+. ..+
T Consensus 736 ~V~PgS~~V~~~l~~eGl~~~l~~aGa~v~~pgCg~CiGn~~~~--------~~ge~---~isTsNRNF~GR~G~~-~~~ 803 (865)
T 1l5j_A 736 WVAPPTRMDAAQLTEEGYYSVFGKSGARIEIPGCSLCMGNQARV--------ADGAT---VVSTSTRNFPNRLGTG-ANV 803 (865)
T ss_dssp EECCSBHHHHHHHHHTTHHHHHHHHTCEECCSSCGGGTCSSSCC--------CTTCE---EEESSSCCCTTSSSTT-CEE
T ss_pred EEECCCHHHHHHHHHcCcHHHHHHcCCEEcCCccccccCcCCcC--------CCCCE---EEecCCcCCCCCCCCC-cce
Confidence 99999999999999999999999999999999999999998654 33553 6799999999999965 578
Q ss_pred eecChHHHHHHHhccccccCCCCCCCcCCCCCCccccccCCCChHHHHHHhhccCCcc
Q 003793 451 YLASPPLVVAYALAGTVDIDFEKEPIGTGKDGKGVYFKDIWPSNEEIAEVVQSSVLPD 508 (795)
Q Consensus 451 yLaSP~~vaA~AlaG~I~~d~~~~plg~~~~G~~v~l~di~P~~~ei~~~~~~~v~p~ 508 (795)
|||||++||||||+|+| |+++|+.++++..++|+
T Consensus 804 yLaSP~~vAAsAiaG~i------------------------~~p~e~~~~~~~~~~~~ 837 (865)
T 1l5j_A 804 FLASAELAAVAALIGKL------------------------PTPEEYQTYVAQVDKTA 837 (865)
T ss_dssp EECCHHHHHHHHHHSBC------------------------CCHHHHHHHHHHHHTTH
T ss_pred EECCHHHHHHHHhCCcC------------------------CCHHHHHHHHHhhcCCc
Confidence 99999999999999999 44577777777777773
No 4
>2pkp_A Homoaconitase small subunit; beta barrel, amino-acid biosynthesis, leucine biosynthesis, structural genomics, NPPSFA; 2.10A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=3.3e-39 Score=319.25 Aligned_cols=155 Identities=30% Similarity=0.520 Sum_probs=126.3
Q ss_pred EeecCCCCcccccccCCCCCCCChHhhHHHHcCCCccccccccCCCCChhhcccccccchhhhhhhcCCCCCCceeecCC
Q 003793 569 LLNFGDSITTDHISPAGSIHKDSPAAKYLLERGVDRKDFNSYGSRRGNDEVMARGTFANIRIVNKLLNGEVGPKTVHIPT 648 (795)
Q Consensus 569 L~~~gd~itTD~I~PaG~i~~~s~a~~~L~~~g~~~~~~n~yg~rr~n~evm~rg~F~n~r~~n~~~~~~~g~~t~~~p~ 648 (795)
++++|||||||||+| ++||+ |.|.+.+.+++|.++| |
T Consensus 7 v~~~~dnIdTD~IiP----------a~~l~---------------~~~~~~l~~~~f~~~~-----------------p- 43 (170)
T 2pkp_A 7 AHKFGDDVDTDAIIP----------GPYLR---------------TTDPYELASHCMAGID-----------------E- 43 (170)
T ss_dssp EEECCSCCBHHHHSC----------GGGGS---------------CCCHHHHHTTTTTTTC-----------------T-
T ss_pred EEECCCCCChhhcCh----------HHHhC---------------CCCHHHHHHHhcccCC-----------------C-
Confidence 688999999999999 58986 2345566777887765 1
Q ss_pred CcccccccHHHHHHHcCCceEEEeCCccCCCCchhhhhhhhhhcCeeEEEecchhHHHhhhhccCcccccccCCccchhh
Q 003793 649 GEKLYVFDAAMRYKAAGHETIVLAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDADT 728 (795)
Q Consensus 649 ~~~~~v~~~a~~y~~~g~~~iiVaG~NfG~GSSRE~Aa~a~~~lGv~aVIA~SFarI~~~Nlin~Gilpl~~~~~~~~~~ 728 (795)
+++.+++. ++|||||+|||||||||||||+++++||+||||+|||||||+||+|||||||+|+ ++.
T Consensus 44 -------~f~~~~~~---~~iivaG~nfG~GSSREhAa~a~~~~Gi~aVIA~SFarIf~~N~in~Gllpl~~~----~~~ 109 (170)
T 2pkp_A 44 -------NFPKKVKE---GDVIVAGENFGCGSSREQAVIAIKYCGIKAVIAKSFARIFYRNAINVGLIPIIAN----TDE 109 (170)
T ss_dssp -------THHHHCCT---TCEEEECTTBTBSSCCHHHHHHHHTTTCCEEEESCBCHHHHHHHHHHTCEEEECC----GGG
T ss_pred -------chHHhCCC---CCEEEecCCCCCCCCHHHHHHHHHHhCCcEEEEchHHHHHHhhHHHCCCceEEec----HHH
Confidence 23344432 5899999999999999999999999999999999999999999999999999996 444
Q ss_pred cccCCCceEEEecCCccccCCCCceEEEEcCCCeEEEEEecCCCHHHHHHHHhcChHHHHHHHhh
Q 003793 729 LGLAGHERYTINLPNKVSEIRPGQDITVTTDTGKSFTCTVRFDTEVELAYFDHGGILPYVIRNLI 793 (795)
Q Consensus 729 l~~~~~~~~~idl~~~~~~~~~g~~v~v~~~~g~~~~~~~~~~~~~e~~~~~aGGll~~v~~~~~ 793 (795)
+.++++++||+..+ +|. +..+|+++.+. ..++.+++++++||+|||++++++
T Consensus 110 --l~~gd~i~idl~~~--------~v~-~~~~g~~~~~~--~~~~~~~~~l~aGGll~~~~~~~~ 161 (170)
T 2pkp_A 110 --IKDGDIVEIDLDKE--------EIV-ITNKNKTIKCE--TPKGLEREILAAGGLVNYLKKRKL 161 (170)
T ss_dssp --CCTTCEEEEETTTT--------EEE-EGGGTEEEECB--CCCHHHHHHHHTTSHHHHHHHHHH
T ss_pred --cCCCcEEEEECCCC--------EEE-ECCCCeEEEEE--eCCHHHHHHHHcCCHHHHHHHHHH
Confidence 46788999997652 222 23567777663 358999999999999999999876
No 5
>1v7l_A 3-isopropylmalate dehydratase small subunit; beta barrel, lyase; 1.98A {Pyrococcus horikoshii} SCOP: c.8.2.1
Probab=100.00 E-value=6.6e-39 Score=314.92 Aligned_cols=152 Identities=34% Similarity=0.509 Sum_probs=122.9
Q ss_pred EeecCCCCcccccccCCCCCCCChHhhHHHHcCCCccccccccCCCCChhhcccccccchhhhhhhcCCCCCCceeecCC
Q 003793 569 LLNFGDSITTDHISPAGSIHKDSPAAKYLLERGVDRKDFNSYGSRRGNDEVMARGTFANIRIVNKLLNGEVGPKTVHIPT 648 (795)
Q Consensus 569 L~~~gd~itTD~I~PaG~i~~~s~a~~~L~~~g~~~~~~n~yg~rr~n~evm~rg~F~n~r~~n~~~~~~~g~~t~~~p~ 648 (795)
++++|||||||||+| ++||+ |.|.+.+.++.|.+++ |
T Consensus 7 ~~~~~dnidTD~IiP----------a~~l~---------------~~~~~~l~~~~f~~~~-----------------p- 43 (163)
T 1v7l_A 7 VWKFGDDISTDEITP----------GRYNL---------------TKDPKELAKIAFIEVR-----------------P- 43 (163)
T ss_dssp EEECCSCCBHHHHSC----------TTSCC---------------CSCHHHHHHHTTTTTC-----------------T-
T ss_pred EEEcCCCCChhccch----------HHHhC---------------CCCHHHHHHHhCCccC-----------------c-
Confidence 679999999999999 47886 2355566777777654 1
Q ss_pred CcccccccHHHHHHHcCCceEEEeCCccCCCCchhhhhhhhhhcCeeEEEecchhHHHhhhhccCcccccccCCccchhh
Q 003793 649 GEKLYVFDAAMRYKAAGHETIVLAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDADT 728 (795)
Q Consensus 649 ~~~~~v~~~a~~y~~~g~~~iiVaG~NfG~GSSRE~Aa~a~~~lGv~aVIA~SFarI~~~Nlin~Gilpl~~~~~~~~~~ 728 (795)
+++.+++. ++|||||+|||||||||||||+++++||+||||+||+||||+||+|||||||+|+ ++.
T Consensus 44 -------~f~~~~~~---g~iivag~nfG~GSSREhAa~a~~~~Gi~aVIA~SFarIf~~N~in~Gllpl~~~----~~~ 109 (163)
T 1v7l_A 44 -------DFARNVRP---GDVVVAGKNFGIGSSRESAALALKALGIAGVIAESFGRIFYRNAINIGIPLLLGK----TEG 109 (163)
T ss_dssp -------THHHHCCT---TCEEECCSSBTBSCCCTHHHHHHHHHTCCEEEESCBCHHHHHHHHHHTCCEEESC----CTT
T ss_pred -------chHHhCCC---CCEEEecCcCCCCCCHHHHHHHHHHhCCCEEEEchHHHHHHhhHHHCCCceEEec----HHH
Confidence 23444443 4799999999999999999999999999999999999999999999999999996 343
Q ss_pred cccCCCceEEEecCCccccCCCCceEEEEcCCCeE-EEEEecCCCHHHHHHHHhcChHHHHHHHhh
Q 003793 729 LGLAGHERYTINLPNKVSEIRPGQDITVTTDTGKS-FTCTVRFDTEVELAYFDHGGILPYVIRNLI 793 (795)
Q Consensus 729 l~~~~~~~~~idl~~~~~~~~~g~~v~v~~~~g~~-~~~~~~~~~~~e~~~~~aGGll~~v~~~~~ 793 (795)
+.++++++||+..+ .| + +|++ +.+. ..++.+++++++||+|||+++++.
T Consensus 110 --l~~gd~i~idl~~~--------~v--~--~g~~~~~~~--~~~~~~~~~l~aGGll~~~~~~~~ 159 (163)
T 1v7l_A 110 --LKDGDLVTVNWETG--------EV--R--KGDEILMFE--PLEDFLLEIVREGGILEYIRRRGD 159 (163)
T ss_dssp --CCTTCEEEEETTTT--------EE--E--ETTEEEECE--ECCHHHHHHHHTTSHHHHHHHSCC
T ss_pred --cCCCcEEEEEccCC--------EE--E--CCcEEEEEE--cCCHHHHHHHHcCCHHHHHHHHHh
Confidence 46788999997653 23 3 4555 6552 248999999999999999999753
No 6
>2hcu_A 3-isopropylmalate dehydratase small subunit; beta barrel, lyase; 2.10A {Streptococcus mutans}
Probab=100.00 E-value=1.6e-38 Score=323.07 Aligned_cols=180 Identities=26% Similarity=0.389 Sum_probs=134.4
Q ss_pred CCCCCCCCCCCCCCCCC--ccceEEeecCCCCcccccccCCCCCCCChHhhHHHHcCCCccccccccCCCCChhhccccc
Q 003793 547 PPYFKNMTMEPPGPHGV--KDAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLLERGVDRKDFNSYGSRRGNDEVMARGT 624 (795)
Q Consensus 547 pp~f~~~~~~~~~~~~i--~~a~vL~~~gd~itTD~I~PaG~i~~~s~a~~~L~~~g~~~~~~n~yg~rr~n~evm~rg~ 624 (795)
.|||.++...+...+.+ ..++++.+.||||||||||| ++||+. +++.+| .+++
T Consensus 5 ~~~~~~~~~~~~~M~~f~~~~g~v~~l~~dnIdTD~IiP----------a~~L~~--~~~~~l-------------~~~~ 59 (213)
T 2hcu_A 5 ASMTGGQQMGRGSMEEFTIYTGTTVPLMNDNIDTDQILP----------KQFLKL--IDKKGF-------------GKYL 59 (213)
T ss_dssp --------CCCCCCCCCSEEEEEEEEECCSCCCHHHHSC----------GGGGGS--CTTSCC-------------GGGT
T ss_pred ccccCCcccccccCCCceEEEEEEEEcCCCCCChhhcch----------HHHhCc--CCHHHH-------------HHHH
Confidence 46777776655544444 67789888899999999999 699984 555554 7899
Q ss_pred ccchhhhhhhcCCCCCCceeecCCCcccccccHHHHHHHcCCceEEEeCCccCCCCchhhhhhhhhhcCeeEEEecchhH
Q 003793 625 FANIRIVNKLLNGEVGPKTVHIPTGEKLYVFDAAMRYKAAGHETIVLAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFER 704 (795)
Q Consensus 625 F~n~r~~n~~~~~~~g~~t~~~p~~~~~~v~~~a~~y~~~g~~~iiVaG~NfG~GSSRE~Aa~a~~~lGv~aVIA~SFar 704 (795)
|+++|+.|+ +|.++|. ++.+. ++|+. ++|||||+|||||||||||+|+++++||+||||+||+|
T Consensus 60 f~~~r~~~~--~g~~~p~----------f~~~~-~~~~~---~~IlvaG~NfGcGSSREhA~~al~~~Gi~aVIA~SFAr 123 (213)
T 2hcu_A 60 MYEWRYLDN--NYTENPD----------FIFNQ-PEYRE---ASILITGDNFGAGSSREHAAWALADYGFKVIVAGSFGD 123 (213)
T ss_dssp THHHHBSST--TCCBCTT----------SGGGS-GGGTT---CCEEEECSSBTCSSCCHHHHHHHHHHTCCEEEESCBCH
T ss_pred hhccccccc--CCCCCCC----------ccccc-hhhcC---CcEEEecCCCCCCCCHHHHHHHHHHhCCcEEEEchHHH
Confidence 999998875 4444431 23232 35654 58999999999999999999999999999999999999
Q ss_pred HHhhhhccCcccccccCCccchhhc-ccCCCceEEEecCCccccCCCCceEEEEcCCCeEEEEEecCCCHHHHHHHHhc
Q 003793 705 IHRSNLVGMGIIPLCFKPGEDADTL-GLAGHERYTINLPNKVSEIRPGQDITVTTDTGKSFTCTVRFDTEVELAYFDHG 782 (795)
Q Consensus 705 I~~~Nlin~Gilpl~~~~~~~~~~l-~~~~~~~~~idl~~~~~~~~~g~~v~v~~~~g~~~~~~~~~~~~~e~~~~~aG 782 (795)
|||+||+|+|||||+|+++ +++.| ....+++++||+.++ +|+ ..+| ++.+. + +++.+++|.+|
T Consensus 124 IF~~N~in~GlLpl~~~~~-~~~~l~~~~~G~~i~VDl~~~--------~I~--~~~g-~~~f~--i-~~~~k~~l~~G 187 (213)
T 2hcu_A 124 IHYNNDLNNGILPIIQPKE-VRDKLAKLKPTDEVTVNLFEQ--------KIY--SPVG-DFSFD--I-DGEWKHKLLNG 187 (213)
T ss_dssp HHHHHHHTTTCEEEECCHH-HHHHHHTSCTTCEEEEETTTT--------EEE--ETTE-EEECC--C-CHHHHHHHHTT
T ss_pred HHHHHHHHcCCCcEEeCHH-HHHHHhccCCCCEEEEECCCC--------EEE--ECCc-eEEEe--C-CHHHHHHHHcC
Confidence 9999999999999999653 45655 225688999999874 333 3456 66666 3 78999999988
No 7
>1l5j_A Aconitate hydratase 2; molecular recognition, RNA binding, citric acid cycle, heat- like domain, lyase; HET: TRA; 2.40A {Escherichia coli} SCOP: a.118.15.1 c.8.2.1 c.83.1.1
Probab=100.00 E-value=1.1e-39 Score=383.80 Aligned_cols=280 Identities=20% Similarity=0.254 Sum_probs=214.7
Q ss_pred CCCCCCCCc------cCCceecChHHHHHHHhccccccCCCCCCCcCCCCCCcc-ccccCCCChHHHH----HHhhc-cC
Q 003793 438 NFEGRVHPL------TRANYLASPPLVVAYALAGTVDIDFEKEPIGTGKDGKGV-YFKDIWPSNEEIA----EVVQS-SV 505 (795)
Q Consensus 438 NF~GR~g~~------~~~~yLaSP~~vaA~AlaG~I~~d~~~~plg~~~~G~~v-~l~di~P~~~ei~----~~~~~-~v 505 (795)
=|.+|+.|. .++.||+|| |.+++..+.|+.+..+++||+...|..| +|.|+| +.+|++ +.++. .+
T Consensus 48 ~~~~rv~pg~~~aa~vKA~fL~~i--~~~~~~~~~i~~~~a~~lLg~m~gG~nv~~L~d~~-~~~~~a~~a~~~l~~~~l 124 (865)
T 1l5j_A 48 LLTNRVPPGVDEAAYVKAGFLAAI--AKGEAKSPLLTPEKAIELLGTMQGGYNIHPLIDAL-DDAKLAPIAAKALSHTLL 124 (865)
T ss_dssp HHHHSSCCTTCHHHHHHHHHHHHH--HTTSSCBTTBCHHHHHHHHTTSCSSTTHHHHHHGG-GCTTTHHHHHHHHHTCCT
T ss_pred HHHcCCCCCCChHHHHHHHHHHHH--HhCcccCCccCHHHHHHhcccCCCCCchHHHHHHh-CchhhHHHHHHHHHhhhc
Confidence 478899888 778899999 6689999999999999999999999999 799999 555555 45544 55
Q ss_pred CcchhhhccccccCCCcccccccCCCCCccccCCCCccccCCCCCCCCCCCCCCCCCCccceEEeecCCCCcccccccCC
Q 003793 506 LPDMFKSTYEAITKGNPMWNQLSVPTSTLYSWDPNSTYIHEPPYFKNMTMEPPGPHGVKDAYCLLNFGDSITTDHISPAG 585 (795)
Q Consensus 506 ~p~~~~~~y~~~~~~~~~w~~l~~~~~~~~~w~~~st~i~~pp~f~~~~~~~~~~~~i~~a~vL~~~gd~itTD~I~PaG 585 (795)
-.++|.++|+....||+.|+.+ ++.|...+-+..+|+.- ..+.+ + +.++|||||||+|||
T Consensus 125 ~~d~f~~v~~~~~~gn~~a~~v------l~swa~ae~Ft~~p~~~----------~~i~g-~-v~~~~~nIdTD~IiP-- 184 (865)
T 1l5j_A 125 MFDNFYDVEEKAKAGNEYAKQV------MQSWADAEWFLNRPALA----------EKLTV-T-VFKVTGETNTDDLSP-- 184 (865)
T ss_dssp TTTHHHHHHHHHHTTCHHHHHH------HHHHHTTHHHHTSCCCC----------SCEEE-E-EEEEEEEEEHHHHSC--
T ss_pred cHHHHHHHHHHHhccCHHHHHH------HHhcccccccccCCCCC----------ceEEE-E-EEecCCCCchhccCc--
Confidence 6788999999999999999854 78998876555555542 23433 4 567899999999999
Q ss_pred CCCCCChHhhHHHHcCCCccccccccCCCCChhhcccccccchhhhhhhcCCCCCCceeecCCCcccccccHHHHHHHcC
Q 003793 586 SIHKDSPAAKYLLERGVDRKDFNSYGSRRGNDEVMARGTFANIRIVNKLLNGEVGPKTVHIPTGEKLYVFDAAMRYKAAG 665 (795)
Q Consensus 586 ~i~~~s~a~~~L~~~g~~~~~~n~yg~rr~n~evm~rg~F~n~r~~n~~~~~~~g~~t~~~p~~~~~~v~~~a~~y~~~g 665 (795)
++||..+ .++ +.+.++.|.++|. .+.+ .++.+. .-+...++++..|
T Consensus 185 --------a~~l~~~-~d~-------------~~~a~~lf~~~r~--~~~p--------~f~~~~--~~~~~i~~~~~~G 230 (865)
T 1l5j_A 185 --------APDAWSR-PDI-------------PLHALAMLKNARE--GIEP--------DQPGVV--GPIKQIEALQQKG 230 (865)
T ss_dssp --------GGGGGGT-TSH-------------HHHGGGTTCSCBT--TBCC--------SBTTTB--CSHHHHHHHHTTS
T ss_pred --------hhhhhcC-CCH-------------HHHHHHHhhcccc--CCCc--------cccccc--cchhhhhhhhcCC
Confidence 6899432 333 3345677776661 1111 111111 0123346677776
Q ss_pred CceEEEeCCccCCCCchhhhhhhh-------------hhcCeeEEEecchhHHHhhhhccCcccccccCCccchhhcccC
Q 003793 666 HETIVLAGAEYGSGSSRDWAAKGP-------------MLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDADTLGLA 732 (795)
Q Consensus 666 ~~~iiVaG~NfG~GSSRE~Aa~a~-------------~~lGv~aVIA~SFarI~~~Nlin~Gilpl~~~~~~~~~~l~~~ 732 (795)
. .|+|+|+|||||||||||+|++ +.+| ++|||+||+||||+||+|+|+|||+++ .+.| .
T Consensus 231 ~-~IlvaG~NFGcGSSREhA~~al~~~~g~~~~~~p~k~~G-~~VIA~SFA~IF~~N~~n~Gllpi~~~----v~~l--~ 302 (865)
T 1l5j_A 231 F-PLAYVGDVVGTGSSRKSATNSVLWFMGDDIPHVPNKRGG-GLCLGGKIAPIFFNTMEDAGALPIEVD----VSNL--N 302 (865)
T ss_dssp S-CEEEEEEEEEESCCCTHHHHHHHHHHSEEETTEEEEEEC-CEEEEEEECHHHHHHHHHTTCEEEECC----CTTC--C
T ss_pred C-EEEEECCceecCcchHHHHHHHHHHhcCCCcCCchhhcC-CeEEechHHHHHHHHHHHcCCceEEec----Hhhc--C
Confidence 4 5999999999999999999999 9999 999999999999999999999999995 3443 5
Q ss_pred CCceEEEecCCccccCCCCceEEEEcCCCeE-EEEEecCCCHHHHHHHHhcChHHHHHHHhh
Q 003793 733 GHERYTINLPNKVSEIRPGQDITVTTDTGKS-FTCTVRFDTEVELAYFDHGGILPYVIRNLI 793 (795)
Q Consensus 733 ~~~~~~idl~~~~~~~~~g~~v~v~~~~g~~-~~~~~~~~~~~e~~~~~aGGll~~v~~~~~ 793 (795)
.+++++||+.++ +|+ +..+|++ +.+.+ .++++++++++||++||+++|.+
T Consensus 303 ~Gd~i~Idl~~g--------~I~-~~~~g~~~~~f~~--~p~~~~~~v~AGGli~~i~~r~l 353 (865)
T 1l5j_A 303 MGDVIDVYPYKG--------EVR-NHETGELLATFEL--KTDVLIDEVRAGGRIPLIIGRGL 353 (865)
T ss_dssp TTCEEEEETTTT--------EEE-ETTTCCEEEECCC--SCTHHHHHHHHTSHHHHHHHHHH
T ss_pred CCCEEEEECCCC--------EEE-EcCCCeEEEEEEe--CCHHHHHHHHcCChhhhhhcchH
Confidence 688999998874 222 2356655 66654 57899999999999999999865
No 8
>3vba_A Isopropylmalate/citramalate isomerase small subun; lyase, LEUD, cytosol; 2.00A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=1.2e-37 Score=308.48 Aligned_cols=160 Identities=28% Similarity=0.507 Sum_probs=127.5
Q ss_pred cceEEeecCCCCcccccccCCCCCCCChHhhHHHHcCCCccccccccCCCCChhhcccccccchhhhhhhcCCCCCCcee
Q 003793 565 DAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLLERGVDRKDFNSYGSRRGNDEVMARGTFANIRIVNKLLNGEVGPKTV 644 (795)
Q Consensus 565 ~a~vL~~~gd~itTD~I~PaG~i~~~s~a~~~L~~~g~~~~~~n~yg~rr~n~evm~rg~F~n~r~~n~~~~~~~g~~t~ 644 (795)
..+++ ++|||||||+|+| ++||+. . +.+.+.++.|.++|
T Consensus 6 ~g~v~-~~gdnIdTD~IiP----------a~~l~~--~-------------~~~~l~~~~f~~~~--------------- 44 (176)
T 3vba_A 6 KGRVW-KFGNNVDTDAILP----------ARYLVY--T-------------KPEELAQFVMTGAD--------------- 44 (176)
T ss_dssp EEEEE-ECCSSCBHHHHSC----------GGGTTC--C-------------SHHHHGGGTTTTTC---------------
T ss_pred EEEEE-EeCCCcchhhcCc----------HHHhCc--C-------------CHHHHHHhhCcCCC---------------
Confidence 34554 8899999999999 689863 2 44556777787764
Q ss_pred ecCCCcccccccHHHHHHHcCCceEEEeCCccCCCCchhhhhhhhhhcCeeEEEecchhHHHhhhhccCcccccccCCcc
Q 003793 645 HIPTGEKLYVFDAAMRYKAAGHETIVLAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGE 724 (795)
Q Consensus 645 ~~p~~~~~~v~~~a~~y~~~g~~~iiVaG~NfG~GSSRE~Aa~a~~~lGv~aVIA~SFarI~~~Nlin~Gilpl~~~~~~ 724 (795)
| +++.+|+. ++|||||+|||||||||||+|+++++||+||||+||+|||++||+|+|+||++++ +
T Consensus 45 --p--------~F~~~~~~---g~IlVaG~NFG~GSSREhA~~al~~~Gi~aVIA~SFA~If~~N~in~Gl~~i~~~--~ 109 (176)
T 3vba_A 45 --P--------DFPKKVKP---GDIIVGGKNFGCGSSREHAPLGLKGAGISCVIAESFARIFYRNAINVGLPLIECK--G 109 (176)
T ss_dssp --T--------THHHHCCT---TCEEEECTTBTBSSCCTHHHHHHHHTTCCEEEESCBCHHHHHHHHHTTCCEEECT--T
T ss_pred --c--------cHHHhcCC---CCEEEeCCCccCCccHHHHHHHHHHhCCcEEEeccHHHHHHhhHHHcCCCeEEcc--h
Confidence 1 23456653 4799999999999999999999999999999999999999999999999998876 3
Q ss_pred chhhcccCCCceEEEecCCccccCCCCceEEEEcCCCeEEEEEecCCCHHHHHHHHhcChHHHHHHHhh
Q 003793 725 DADTLGLAGHERYTINLPNKVSEIRPGQDITVTTDTGKSFTCTVRFDTEVELAYFDHGGILPYVIRNLI 793 (795)
Q Consensus 725 ~~~~l~~~~~~~~~idl~~~~~~~~~g~~v~v~~~~g~~~~~~~~~~~~~e~~~~~aGGll~~v~~~~~ 793 (795)
+++. +..+++++||+.++ +|+ ...+|+++.+. .+ ++.+++++++||++||++++..
T Consensus 110 ~~~~--~~~gd~i~idl~~~--------~v~-~~~~g~~~~~~-~l-~~~~~~ii~aGGli~~~k~~~~ 165 (176)
T 3vba_A 110 ISEK--VNEGDELEVNLETG--------EIK-NLTTGEVLKGQ-KL-PEFMMEILEAGGLMPYLKKKMA 165 (176)
T ss_dssp HHHH--CCTTCEEEEETTTC--------EEE-ETTTCCEEECC-CC-CHHHHHHHHHTSHHHHHHHHHH
T ss_pred HHHh--cCCCCEEEEECCCC--------EEE-eCCCCeEEEEe-cC-CHHHHHHHHcCCHHHHHHHhcc
Confidence 4555 35678999998753 222 23467788766 23 8999999999999999999864
No 9
>3q3w_A 3-isopropylmalate dehydratase small subunit; structural genomics, center for structural genomics of infec diseases, csgid, isomerase; HET: MSE; 1.89A {Campylobacter jejuni}
Probab=100.00 E-value=1.3e-34 Score=291.61 Aligned_cols=164 Identities=23% Similarity=0.375 Sum_probs=124.4
Q ss_pred ccceEEeecCCCCcccccccCCCCCCCChHhhHHHHcCCCccccccccCCCCChhhcccccccchhhhhhhcCCCCCCce
Q 003793 564 KDAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLLERGVDRKDFNSYGSRRGNDEVMARGTFANIRIVNKLLNGEVGPKT 643 (795)
Q Consensus 564 ~~a~vL~~~gd~itTD~I~PaG~i~~~s~a~~~L~~~g~~~~~~n~yg~rr~n~evm~rg~F~n~r~~n~~~~~~~g~~t 643 (795)
...+++.+-+||||||+|+| ++||+. +++.+| .++.|.+||+.. .|.+.+
T Consensus 10 ~~G~a~~l~~dnIDTD~IIP----------~~fL~~--~~~~~l-------------g~~~f~~~R~~~---~g~~~~-- 59 (203)
T 3q3w_A 10 HKGIACPLEYANIDTDQIIP----------KQFLLA--VSKQGF-------------GKHLFHDLRYLD---DKESVL-- 59 (203)
T ss_dssp EEEEEEEECCSSCBHHHHSC----------GGGCBS--SCSSCS-------------GGGTTHHHHBSS---SSSCSB--
T ss_pred EEEEEEECCCcccChhhcch----------HHHcCc--CCHHHH-------------HHhhhhhhhccc---cCCCCC--
Confidence 34566666679999999999 699974 555554 577899999742 222210
Q ss_pred eecCCCcccccccHHHHHHHcCCceEEEeCCccCCCCchhhhhhhhhhcCeeEEEecchhHHHhhhhccCcccccccCCc
Q 003793 644 VHIPTGEKLYVFDAAMRYKAAGHETIVLAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPG 723 (795)
Q Consensus 644 ~~~p~~~~~~v~~~a~~y~~~g~~~iiVaG~NfG~GSSRE~Aa~a~~~lGv~aVIA~SFarI~~~Nlin~Gilpl~~~~~ 723 (795)
...|+.++ ++|+. ++|||||+|||||||||||+|+++.+||+||||+||+|||++||+|+|||||++++.
T Consensus 60 ------~pdF~~n~-~~~~~---~~IlVaG~NFGcGSSREhA~~Al~~~Gi~aVIA~SFa~IF~~N~~n~Gll~i~~~~~ 129 (203)
T 3q3w_A 60 ------NMDFNLNK-KEYQN---SSILVSFENFGSGSSREHAPWALVDYGIRAIIAPSFADIFKNNALGNGLLTIELAKD 129 (203)
T ss_dssp ------CTTSGGGS-GGGTT---EEEEEECSSBTBSSCCTHHHHHHHHHTCCEEEESCBCHHHHHHHHHTTCEEEECCHH
T ss_pred ------CCChhhcc-cccCC---CCEEEeCCCCCCCCcHHHHHHHHHHcCceEEEECcHHHHHHHHHHhCCCCeEEeCHH
Confidence 11244444 45654 479999999999999999999999999999999999999999999999999999764
Q ss_pred cchhhcc----cCCCceEEEecCCccccCCCCceEEEEcCCCeEEEEEecCCCHHHHHHHHhc
Q 003793 724 EDADTLG----LAGHERYTINLPNKVSEIRPGQDITVTTDTGKSFTCTVRFDTEVELAYFDHG 782 (795)
Q Consensus 724 ~~~~~l~----~~~~~~~~idl~~~~~~~~~g~~v~v~~~~g~~~~~~~~~~~~~e~~~~~aG 782 (795)
..+.|. ...+++++|||..+ +| +. +|+++.+.+ ++..++.|.+|
T Consensus 130 -~~~~l~~~~~~~~g~~i~VDL~~~--------~i--~~-~g~~~~f~i---~~~~r~~Ll~G 177 (203)
T 3q3w_A 130 -EVLEIVDELKKSQDKNIEISLLEK--------RV--FF-KDKIFSFDL---DDFHRICLLEG 177 (203)
T ss_dssp -HHHHHHHHHHHCSCCEEEEETTTT--------EE--EE-TTEEEECCC---CHHHHHHHHHT
T ss_pred -HHHHHHHHhhcCCCCEEEEECCCC--------EE--EE-CCEEEEEEe---CHHHHHHHHcC
Confidence 344442 25688999999874 33 32 567777764 78888888887
No 10
>3h5j_A 3-isopropylmalate dehydratase small subunit; leucine biosynthesis, isopropylmalate isomerase, LEUD, amino-acid biosynthesis; 1.20A {Mycobacterium tuberculosis} PDB: 3h5h_A 3h5e_A
Probab=99.98 E-value=1.4e-33 Score=277.17 Aligned_cols=157 Identities=25% Similarity=0.367 Sum_probs=120.1
Q ss_pred CccceEEeecCCCCcccccccCCCCCCCChHhhHHHHcCCCccccccccCCCCChhhcccccccchhhhhhhcCCCCCCc
Q 003793 563 VKDAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLLERGVDRKDFNSYGSRRGNDEVMARGTFANIRIVNKLLNGEVGPK 642 (795)
Q Consensus 563 i~~a~vL~~~gd~itTD~I~PaG~i~~~s~a~~~L~~~g~~~~~~n~yg~rr~n~evm~rg~F~n~r~~n~~~~~~~g~~ 642 (795)
....+++.+.|||||||+|+| ++||+. +++.+ |.++.|.++|.. |
T Consensus 9 ~~~G~~~~l~~dnIdTD~IiP----------a~~L~~--~~~~~-------------l~~~~f~~~R~~---------p- 53 (171)
T 3h5j_A 9 THSGIGVPLRRSNVDTDQIIP----------AVFLKR--VTRTG-------------FEDGLFAGWRSD---------P- 53 (171)
T ss_dssp EEEEEEEEECCCSCCHHHHSC----------GGGTTC--CSCSC-------------CGGGTTTTGGGS---------T-
T ss_pred EEEEEEEEccCCccCcccCCc----------hhhcCC--CCHHH-------------HHHHhhccCcCC---------c-
Confidence 445678888999999999999 689984 44443 467889988721 1
Q ss_pred eeecCCCcccccccHHHHHHHcCCceEEEeCCccCCCCchhhhhhhhhhcCeeEEEecchhHHHhhhhccCcccccccCC
Q 003793 643 TVHIPTGEKLYVFDAAMRYKAAGHETIVLAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKP 722 (795)
Q Consensus 643 t~~~p~~~~~~v~~~a~~y~~~g~~~iiVaG~NfG~GSSRE~Aa~a~~~lGv~aVIA~SFarI~~~Nlin~Gilpl~~~~ 722 (795)
.|+.++ ++|+. ++|||||+|||||||||||+|+++.+||+||||+||+|||++||+|+|+|||++++
T Consensus 54 ---------~F~~~~-~~~~~---~~IlVaG~NFGcGSSREhA~~al~~~Gi~~VIA~Sfa~If~~N~~n~Gllpi~~~~ 120 (171)
T 3h5j_A 54 ---------AFVLNL-SPFDR---GSVLVAGPDFGTGSSREHAVWALMDYGFRVVISSRFGDIFRGNAGKAGLLAAEVAQ 120 (171)
T ss_dssp ---------TSGGGS-TTGGG---CCEEEECSSBTCSSCCHHHHHHHHHHTCCEEEESSBCHHHHHHHHHHTCEEEECCH
T ss_pred ---------Cccccc-cccCC---CcEEEeCCCccCCcCHHHHHHHHHHhCCcEEEECcHHHHHHhHHHHcCCceEEeCH
Confidence 122222 34553 47999999999999999999999999999999999999999999999999999975
Q ss_pred ccchhhc----ccCCCceEEEecCCccccCCCCceEEEEcCCCeEEEEEecCCCHHHHHHHHhc
Q 003793 723 GEDADTL----GLAGHERYTINLPNKVSEIRPGQDITVTTDTGKSFTCTVRFDTEVELAYFDHG 782 (795)
Q Consensus 723 ~~~~~~l----~~~~~~~~~idl~~~~~~~~~g~~v~v~~~~g~~~~~~~~~~~~~e~~~~~aG 782 (795)
. .++.| ....+++++||+.++ +| +. +|+++.+.+ ++..++.|.+|
T Consensus 121 ~-~~~~l~~~~~~~~g~~i~VDl~~~--------~i--~~-~g~~~~F~i---~~~~k~~ll~G 169 (171)
T 3h5j_A 121 D-DVELLWKLIEQSPGLEITANLQDR--------II--TA-ATVVLPFKI---DDHSAWRLLEG 169 (171)
T ss_dssp H-HHHHHHHHHHHSTTCEEEEETTTT--------EE--EE-TTEEEECBC---CHHHHHHHHHT
T ss_pred H-HHHHHHHHhhcCCCcEEEEECCCC--------EE--EE-CCEEEEEEE---CHHHHHHHHhC
Confidence 3 34544 125688999999874 23 32 466777765 67777777665
No 11
>2r4q_A Phosphotransferase system (PTS) fructose-specific iiabc component; fructose specific IIB subunit, PF structural genomics, PSI-2; HET: MSE; 1.60A {Bacillus subtilis subsp} SCOP: c.44.2.2
Probab=32.40 E-value=37 Score=30.74 Aligned_cols=33 Identities=36% Similarity=0.578 Sum_probs=25.7
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHHhcCCccC
Q 003793 332 IAAITSCTNTSNPSVMLGAGLVAKKACELGLEVK 365 (795)
Q Consensus 332 ~a~IGSCTN~~~~dl~~aA~lLa~~a~~~G~kv~ 365 (795)
+++|++|.+|----. +||+.|-+.|.+.|.+++
T Consensus 5 ivaVTaCptGiAhTy-mAaeaL~~aA~~~G~~ik 37 (106)
T 2r4q_A 5 ILAVTACPTGIAHTF-MAADALKEKAKELGVEIK 37 (106)
T ss_dssp EEEEEECSCC--CHH-HHHHHHHHHHHHHTCCEE
T ss_pred EEEEecCCCcHHHHH-HHHHHHHHHHHHCCCeEE
Confidence 578999999976664 567888889999998777
No 12
>2r48_A Phosphotransferase system (PTS) mannose-specific iibca component; PTS system, fructose specific IIB PFAM02379, PSI-2, MCSG; 1.80A {Bacillus subtilis subsp} SCOP: c.44.2.2
Probab=30.95 E-value=38 Score=30.67 Aligned_cols=33 Identities=36% Similarity=0.505 Sum_probs=27.0
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHHhcCCccC
Q 003793 332 IAAITSCTNTSNPSVMLGAGLVAKKACELGLEVK 365 (795)
Q Consensus 332 ~a~IGSCTN~~~~dl~~aA~lLa~~a~~~G~kv~ 365 (795)
+++|++|.+|---- .+||+.|-+.|.+.|.+++
T Consensus 5 ivaVTaCptGiAhT-ymAaeaL~~aA~~~G~~ik 37 (106)
T 2r48_A 5 LLAITSCPNGIAHT-YMAAENLQKAADRLGVSIK 37 (106)
T ss_dssp EEEEEECSSCSHHH-HHHHHHHHHHHHHHTCEEE
T ss_pred EEEEecCCCcHHHH-HHHHHHHHHHHHHCCCeEE
Confidence 57899999997555 5578888888999998777
No 13
>2kyr_A Fructose-like phosphotransferase enzyme IIB compo; ALP protein, structural genomics, PSI-2; NMR {Escherichia coli}
Probab=20.95 E-value=47 Score=30.32 Aligned_cols=33 Identities=27% Similarity=0.439 Sum_probs=26.8
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHHhcCCccC
Q 003793 332 IAAITSCTNTSNPSVMLGAGLVAKKACELGLEVK 365 (795)
Q Consensus 332 ~a~IGSCTN~~~~dl~~aA~lLa~~a~~~G~kv~ 365 (795)
++.|++|.+|---. ..||+.|-+.|.+.|..++
T Consensus 8 IvaVTaCptGiAHT-yMAAeaL~~aA~~~G~~ik 40 (111)
T 2kyr_A 8 LIALCACPMGLAHT-FMAAQALEEAAVEAGYEVK 40 (111)
T ss_dssp EEEEEEESSCHHHH-HHHHHHHHHHHHHTSSEEE
T ss_pred EEEEEcCCCcHHHH-HHHHHHHHHHHHHCCCeEE
Confidence 67899999997655 4577888888999998776
Done!