BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003794
(795 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1YOE|A Chain A, Crystal Structure Of A The E. Coli Pyrimidine Nucleoside
Hydrolase Ybek With Bound Ribose
Length = 322
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 65/137 (47%), Gaps = 27/137 (19%)
Query: 58 VNTNYGLRKAFLPQGGRKYAPLRQPTAQQVLINAI--SAGPITVFVMGSHTNFAIFLMNN 115
V+ GL LP+ +AP + TA +++ + SA P+T+ G TN A+ L ++
Sbjct: 92 VHGESGLDGPALPE--PTFAP-QNCTAVELMAKTLRESAEPVTIVSTGPQTNVALLLNSH 148
Query: 116 PHLKKNIEHIYVMGGAIRSDCFNSTNSSQSEQCDSIGNLYPDDSNPYAEFNIFSDPFAAY 175
P L I I +MGGA+ +GN P AEFNI+ DP AA
Sbjct: 149 PELHSKIARIVIMGGAM-----------------GLGNW-----TPAAEFNIYVDPEAAE 186
Query: 176 TVLHSGIPVTIIPLDAT 192
V SGIPV + LD T
Sbjct: 187 IVFQSGIPVVMAGLDVT 203
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 63/254 (24%), Positives = 106/254 (41%), Gaps = 53/254 (20%)
Query: 408 PVVFDIDMSAGDFLALIYLLKLPVELINLKGILVSSTGWATSATVDVVYDLLHMMGRDDI 467
P++ D D D +A++ L P +++K I S+ T+ V +L ++ R DI
Sbjct: 15 PILLDCDPGHDDAIAIVLALASPE--LDVKAITSSAGNQTPEKTLRNVLRMLTLLNRTDI 72
Query: 468 PVGLGDVFAVGEVNPKFPPIGGCKYAKAIPLGSGGFLDSDTLYGLA-RDLPRSPRRYTAE 526
PV A G V P + + +D ++G + D P P A
Sbjct: 73 PV------AGGAVKPLMREL----------------IIADNVHGESGLDGPALPEPTFA- 109
Query: 527 NSVRFGASQDNDDPELRQPLAVDVWKSIVESIEPGSKITILTNGPLTNLAQIIGLQNS-S 585
Q+ EL K++ ES EP +TI++ GP TN+A ++
Sbjct: 110 -------PQNCTAVELMA-------KTLRESAEP---VTIVSTGPQTNVALLLNSHPELH 152
Query: 586 SVIQDVYIVGGNKGQDNEKGNVFTVPSSKYAEFNMFLDPLAAKAVFESKLEIKLIPLHMQ 645
S I + I+GG G N + AEFN+++DP AA+ VF+S + + + L +
Sbjct: 153 SKIARIVIMGGAMGLGN---------WTPAAEFNIYVDPEAAEIVFQSGIPVVMAGLDVT 203
Query: 646 RRVASFFKILHKLR 659
+ + + R
Sbjct: 204 HKAQIHVEDTERFR 217
>pdb|3G5I|A Chain A, Crystal Structure Of The E.Coli Riha Pyrimidine
Nucleosidase Bound To A Iminoribitol-Based Inhibitor
pdb|3G5I|B Chain B, Crystal Structure Of The E.Coli Riha Pyrimidine
Nucleosidase Bound To A Iminoribitol-Based Inhibitor
pdb|3G5I|C Chain C, Crystal Structure Of The E.Coli Riha Pyrimidine
Nucleosidase Bound To A Iminoribitol-Based Inhibitor
pdb|3G5I|D Chain D, Crystal Structure Of The E.Coli Riha Pyrimidine
Nucleosidase Bound To A Iminoribitol-Based Inhibitor
Length = 312
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 65/137 (47%), Gaps = 27/137 (19%)
Query: 58 VNTNYGLRKAFLPQGGRKYAPLRQPTAQQVLINAI--SAGPITVFVMGSHTNFAIFLMNN 115
V+ GL LP+ +AP + TA +++ + SA P+T+ G TN A+ L ++
Sbjct: 82 VHGESGLDGPALPE--PTFAP-QNCTAVELMAKTLRESAEPVTIVSTGPQTNVALLLNSH 138
Query: 116 PHLKKNIEHIYVMGGAIRSDCFNSTNSSQSEQCDSIGNLYPDDSNPYAEFNIFSDPFAAY 175
P L I I +MGGA+ +GN P AEFNI+ DP AA
Sbjct: 139 PELHSKIARIVIMGGAM-----------------GLGNW-----TPAAEFNIYVDPEAAE 176
Query: 176 TVLHSGIPVTIIPLDAT 192
V SGIPV + LD T
Sbjct: 177 IVFQSGIPVVMAGLDVT 193
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 63/254 (24%), Positives = 106/254 (41%), Gaps = 53/254 (20%)
Query: 408 PVVFDIDMSAGDFLALIYLLKLPVELINLKGILVSSTGWATSATVDVVYDLLHMMGRDDI 467
P++ D D D +A++ L P +++K I S+ T+ V +L ++ R DI
Sbjct: 5 PILLDCDPGHDDAIAIVLALASPE--LDVKAITSSAGNQTPEKTLRNVLRMLTLLNRTDI 62
Query: 468 PVGLGDVFAVGEVNPKFPPIGGCKYAKAIPLGSGGFLDSDTLYGLA-RDLPRSPRRYTAE 526
PV A G V P + + +D ++G + D P P A
Sbjct: 63 PV------AGGAVKPLMREL----------------IIADNVHGESGLDGPALPEPTFA- 99
Query: 527 NSVRFGASQDNDDPELRQPLAVDVWKSIVESIEPGSKITILTNGPLTNLAQIIGLQNS-S 585
Q+ EL K++ ES EP +TI++ GP TN+A ++
Sbjct: 100 -------PQNCTAVELMA-------KTLRESAEP---VTIVSTGPQTNVALLLNSHPELH 142
Query: 586 SVIQDVYIVGGNKGQDNEKGNVFTVPSSKYAEFNMFLDPLAAKAVFESKLEIKLIPLHMQ 645
S I + I+GG G N + AEFN+++DP AA+ VF+S + + + L +
Sbjct: 143 SKIARIVIMGGAMGLGN---------WTPAAEFNIYVDPEAAEIVFQSGIPVVMAGLDVT 193
Query: 646 RRVASFFKILHKLR 659
+ + + R
Sbjct: 194 HKAQIHVEDTERFR 207
>pdb|3B9X|A Chain A, Crystal Structure Of The E. Coli Pyrimidine Nucleoside
Hydrolase Yeik In Complex With Inosine
pdb|3B9X|B Chain B, Crystal Structure Of The E. Coli Pyrimidine Nucleoside
Hydrolase Yeik In Complex With Inosine
pdb|3B9X|C Chain C, Crystal Structure Of The E. Coli Pyrimidine Nucleoside
Hydrolase Yeik In Complex With Inosine
pdb|3B9X|D Chain D, Crystal Structure Of The E. Coli Pyrimidine Nucleoside
Hydrolase Yeik In Complex With Inosine
Length = 333
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 50/115 (43%), Gaps = 22/115 (19%)
Query: 93 SAGPITVFVMGSHTNFAIFLMNNPHLKKNIEHIYVMGGAIRSDCFNSTNSSQSEQCDSIG 152
S G IT+ +G +N A+ + P + I I +MGGA + F
Sbjct: 135 SDGDITLVPVGPLSNIAVAMRMQPAILPKIREIVLMGGAYGTGNFT-------------- 180
Query: 153 NLYPDDSNPYAEFNIFSDPFAAYTVLHSGIPVTIIPLDATKTIPVSENFFVEFER 207
P AEFNIF+DP AA V SG+P+ ++ LD T + + ER
Sbjct: 181 --------PSAEFNIFADPEAARVVFTSGVPLVMMGLDLTNQTVCTPDVIARMER 227
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 68/134 (50%), Gaps = 11/134 (8%)
Query: 539 DPELRQPLAVDVWKSIVESIEPG-SKITILTNGPLTNLAQIIGLQNSS-SVIQDVYIVGG 596
+P RQ + K I++++ IT++ GPL+N+A + +Q + I+++ ++GG
Sbjct: 113 EPLTRQAESTHAVKYIIDTLMASDGDITLVPVGPLSNIAVAMRMQPAILPKIREIVLMGG 172
Query: 597 NKGQDNEKGNVFTVPSSKYAEFNMFLDPLAAKAVFESKLEIKLIPLHMQRRVASFFKILH 656
G N FT PS AEFN+F DP AA+ VF S + + ++ L + + ++
Sbjct: 173 AYGTGN-----FT-PS---AEFNIFADPEAARVVFTSGVPLVMMGLDLTNQTVCTPDVIA 223
Query: 657 KLRDRKKTPESVFS 670
++ +FS
Sbjct: 224 RMERAGGPAGELFS 237
>pdb|1Q8F|A Chain A, Crystal Structure Of The E.Coli Pyrimidine Nucleoside
Hydrolase Yeik
pdb|1Q8F|B Chain B, Crystal Structure Of The E.Coli Pyrimidine Nucleoside
Hydrolase Yeik
pdb|1Q8F|C Chain C, Crystal Structure Of The E.Coli Pyrimidine Nucleoside
Hydrolase Yeik
pdb|1Q8F|D Chain D, Crystal Structure Of The E.Coli Pyrimidine Nucleoside
Hydrolase Yeik
Length = 313
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 50/115 (43%), Gaps = 22/115 (19%)
Query: 93 SAGPITVFVMGSHTNFAIFLMNNPHLKKNIEHIYVMGGAIRSDCFNSTNSSQSEQCDSIG 152
S G IT+ +G +N A+ + P + I I +MGGA + F
Sbjct: 115 SDGDITLVPVGPLSNIAVAMRMQPAILPKIREIVLMGGAYGTGNFT-------------- 160
Query: 153 NLYPDDSNPYAEFNIFSDPFAAYTVLHSGIPVTIIPLDATKTIPVSENFFVEFER 207
P AEFNIF+DP AA V SG+P+ ++ LD T + + ER
Sbjct: 161 --------PSAEFNIFADPEAARVVFTSGVPLVMMGLDLTNQTVCTPDVIARMER 207
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 68/134 (50%), Gaps = 11/134 (8%)
Query: 539 DPELRQPLAVDVWKSIVESIEPGS-KITILTNGPLTNLAQIIGLQNSS-SVIQDVYIVGG 596
+P RQ + K I++++ IT++ GPL+N+A + +Q + I+++ ++GG
Sbjct: 93 EPLTRQAESTHAVKYIIDTLMASDGDITLVPVGPLSNIAVAMRMQPAILPKIREIVLMGG 152
Query: 597 NKGQDNEKGNVFTVPSSKYAEFNMFLDPLAAKAVFESKLEIKLIPLHMQRRVASFFKILH 656
G N FT PS AEFN+F DP AA+ VF S + + ++ L + + ++
Sbjct: 153 AYGTGN-----FT-PS---AEFNIFADPEAARVVFTSGVPLVMMGLDLTNQTVCTPDVIA 203
Query: 657 KLRDRKKTPESVFS 670
++ +FS
Sbjct: 204 RMERAGGPAGELFS 217
>pdb|3MKM|A Chain A, Crystal Structure Of The E. Coli Pyrimidine Nucleoside
Hydrolase Yeik (Apo-Form)
pdb|3MKM|B Chain B, Crystal Structure Of The E. Coli Pyrimidine Nucleoside
Hydrolase Yeik (Apo-Form)
pdb|3MKM|C Chain C, Crystal Structure Of The E. Coli Pyrimidine Nucleoside
Hydrolase Yeik (Apo-Form)
pdb|3MKM|D Chain D, Crystal Structure Of The E. Coli Pyrimidine Nucleoside
Hydrolase Yeik (Apo-Form)
pdb|3MKN|A Chain A, Crystal Structure Of The E. Coli Pyrimidine Nucleosidase
Yeik Bound To A Competitive Inhibitor
pdb|3MKN|B Chain B, Crystal Structure Of The E. Coli Pyrimidine Nucleosidase
Yeik Bound To A Competitive Inhibitor
pdb|3MKN|C Chain C, Crystal Structure Of The E. Coli Pyrimidine Nucleosidase
Yeik Bound To A Competitive Inhibitor
pdb|3MKN|D Chain D, Crystal Structure Of The E. Coli Pyrimidine Nucleosidase
Yeik Bound To A Competitive Inhibitor
Length = 316
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 50/115 (43%), Gaps = 22/115 (19%)
Query: 93 SAGPITVFVMGSHTNFAIFLMNNPHLKKNIEHIYVMGGAIRSDCFNSTNSSQSEQCDSIG 152
S G IT+ +G +N A+ + P + I I +MGGA + F
Sbjct: 118 SDGDITLVPVGPLSNIAVAMRMQPAILPKIREIVLMGGAYGTGNFT-------------- 163
Query: 153 NLYPDDSNPYAEFNIFSDPFAAYTVLHSGIPVTIIPLDATKTIPVSENFFVEFER 207
P AEFNIF+DP AA V SG+P+ ++ LD T + + ER
Sbjct: 164 --------PSAEFNIFADPEAARVVFTSGVPLVMMGLDLTNQTVCTPDVIARMER 210
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 68/134 (50%), Gaps = 11/134 (8%)
Query: 539 DPELRQPLAVDVWKSIVESIEPGS-KITILTNGPLTNLAQIIGLQNSS-SVIQDVYIVGG 596
+P RQ + K I++++ IT++ GPL+N+A + +Q + I+++ ++GG
Sbjct: 96 EPLTRQAESTHAVKYIIDTLMASDGDITLVPVGPLSNIAVAMRMQPAILPKIREIVLMGG 155
Query: 597 NKGQDNEKGNVFTVPSSKYAEFNMFLDPLAAKAVFESKLEIKLIPLHMQRRVASFFKILH 656
G N FT PS AEFN+F DP AA+ VF S + + ++ L + + ++
Sbjct: 156 AYGTGN-----FT-PS---AEFNIFADPEAARVVFTSGVPLVMMGLDLTNQTVCTPDVIA 206
Query: 657 KLRDRKKTPESVFS 670
++ +FS
Sbjct: 207 RMERAGGPAGELFS 220
>pdb|3T8J|A Chain A, Structural Analysis Of Thermostable S. Solfataricus
Pyrimidine- Specific Nucleoside Hydrolase
Length = 311
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 55/107 (51%), Gaps = 23/107 (21%)
Query: 94 AGPITVFVMGSHTNFAI-FLMNNPHLKKNIEHIYVMGGAIRSDCFNSTNSSQSEQCDSIG 152
AG + + TN A+ +L++N +KK I+ ++VMGGA+ IG
Sbjct: 113 AGELEFLAISPLTNLALAYLLDNSIVKK-IKKVWVMGGAVFG----------------IG 155
Query: 153 NLYPDDSNPYAEFNIFSDPFAAYTVLHSGIPVTIIPLDATKTIPVSE 199
N+ P AEFNI+ DP AA V ++G +T+IP D PV++
Sbjct: 156 NI-----TPVAEFNIWVDPDAAKIVFNAGFDITMIPWDVIINYPVTD 197
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 46/85 (54%), Gaps = 11/85 (12%)
Query: 559 EPGSKITILTNGPLTNLAQIIGLQNS-SSVIQDVYIVGGNKGQDNEKGNVFTVPS-SKYA 616
E ++ L PLTNLA L NS I+ V+++GG VF + + + A
Sbjct: 111 EYAGELEFLAISPLTNLALAYLLDNSIVKKIKKVWVMGGA---------VFGIGNITPVA 161
Query: 617 EFNMFLDPLAAKAVFESKLEIKLIP 641
EFN+++DP AAK VF + +I +IP
Sbjct: 162 EFNIWVDPDAAKIVFNAGFDITMIP 186
>pdb|3EPW|A Chain A, Crystal Structure Of Trypanosoma Vivax Nucleoside
Hydrolase In Complex With The Inhibitor
(2r,3r,4s)-1-[(4-Hydroxy-5h-Pyrrolo[3,2-
D]pyrimidin-7-Yl)methyl]-2-(Hydroxymethyl)pyrrolidin-3,
4-Diol
pdb|3EPW|B Chain B, Crystal Structure Of Trypanosoma Vivax Nucleoside
Hydrolase In Complex With The Inhibitor
(2r,3r,4s)-1-[(4-Hydroxy-5h-Pyrrolo[3,2-
D]pyrimidin-7-Yl)methyl]-2-(Hydroxymethyl)pyrrolidin-3,
4-Diol
pdb|3EPX|A Chain A, Crystal Structure Of Trypanosoma Vivax Nucleoside
Hydrolase In Complex With The Inhibitor
(2r,3r,4s)-2-(Hydroxymethyl)-1-(Quinolin-8-
Ylmethyl)pyrrolidin-3,4-Diol
pdb|3EPX|B Chain B, Crystal Structure Of Trypanosoma Vivax Nucleoside
Hydrolase In Complex With The Inhibitor
(2r,3r,4s)-2-(Hydroxymethyl)-1-(Quinolin-8-
Ylmethyl)pyrrolidin-3,4-Diol
Length = 338
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 100/229 (43%), Gaps = 35/229 (15%)
Query: 406 GKPVVFDIDMSAGDFLALIYLLKLPVELINLKGILVSSTGWATSATVDVVYDLLHMMGRD 465
K VV D D + DF+A++ LL E + L G L + +V ++ +M +
Sbjct: 13 AKNVVLDHDGNLDDFVAMV-LLASNTEKVRLIGALCTDADCFVENGFNVTGKIMCLMHNN 71
Query: 466 -DIPVGLGDVFAVGEVNPKFPPIGGCKYAKAIPLGSGGFLDSDTLYGLARDLPRSPRRYT 524
++P+ A VNP FP C LA+++ P
Sbjct: 72 MNLPLFPIGKSAATAVNP-FPKEWRC---------------------LAKNMDDMPILNI 109
Query: 525 AENSVRFGASQDNDDPELRQPLAVDVWKSIVESIEPGSKITILTNGPLTNLAQIIGL--Q 582
EN + + ++ Q L D+ ++ S E K+TI GPL+N+A I +
Sbjct: 110 PENVELWDKIKAENEKYEGQQLLADL---VMNSEE---KVTICVTGPLSNVAWCIDKYGE 163
Query: 583 NSSSVIQDVYIVGGNKGQDNEKGNVFTVPSSKYAEFNMFLDPLAAKAVF 631
+S +++ I+GG + +GNVF + AE+N++ DP +AK VF
Sbjct: 164 KFTSKVEECVIMGG---AVDVRGNVFLPSTDGTAEWNIYWDPASAKTVF 209
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 58/130 (44%), Gaps = 20/130 (15%)
Query: 85 QQVLINAI--SAGPITVFVMGSHTNFAIFLMN-NPHLKKNIEHIYVMGGAIRSDCFNSTN 141
QQ+L + + S +T+ V G +N A + +E +MGGA+
Sbjct: 129 QQLLADLVMNSEEKVTICVTGPLSNVAWCIDKYGEKFTSKVEECVIMGGAV--------- 179
Query: 142 SSQSEQCDSIGNLYPDDSNPYAEFNIFSDPFAAYTVLHS-GIPVTIIPLDATKTIPVSEN 200
D GN++ ++ AE+NI+ DP +A TV G+ + LD+T T+PV
Sbjct: 180 -------DVRGNVFLPSTDGTAEWNIYWDPASAKTVFGCPGLRRIMFSLDSTNTVPVRSP 232
Query: 201 FFVEFERRQN 210
+ F + N
Sbjct: 233 YVQRFGEQTN 242
>pdb|1HP0|A Chain A, Crystal Structure Of An Inosine-Adenosine-Guanosine-
Preferring Nucleoside Hydrolase From Trypanosoma Vivax
In Complex With The Substrate Analogue 3-Deaza-Adenosine
pdb|1HP0|B Chain B, Crystal Structure Of An Inosine-Adenosine-Guanosine-
Preferring Nucleoside Hydrolase From Trypanosoma Vivax
In Complex With The Substrate Analogue 3-Deaza-Adenosine
pdb|1HOZ|A Chain A, Crystal Structure Of An
Inosine-Adenosine-Guanosine-Preferring Nucleoside
Hydrolase From Trypanosoma Vivax
pdb|1HOZ|B Chain B, Crystal Structure Of An
Inosine-Adenosine-Guanosine-Preferring Nucleoside
Hydrolase From Trypanosoma Vivax
pdb|2FF1|A Chain A, Crystal Structure Of Trypanosoma Vivax Nucleoside
Hydrolase Soaked With Immucillinh
pdb|2FF1|B Chain B, Crystal Structure Of Trypanosoma Vivax Nucleoside
Hydrolase Soaked With Immucillinh
pdb|2FF2|A Chain A, Crystal Structure Of Trypanosoma Vivax Nucleoside
Hydrolase Co-Crystallized With Immucillinh
pdb|2FF2|B Chain B, Crystal Structure Of Trypanosoma Vivax Nucleoside
Hydrolase Co-Crystallized With Immucillinh
Length = 339
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 100/229 (43%), Gaps = 35/229 (15%)
Query: 406 GKPVVFDIDMSAGDFLALIYLLKLPVELINLKGILVSSTGWATSATVDVVYDLLHMMGRD 465
K VV D D + DF+A++ LL E + L G L + +V ++ +M +
Sbjct: 14 AKNVVLDHDGNLDDFVAMV-LLASNTEKVRLIGALCTDADCFVENGFNVTGKIMCLMHNN 72
Query: 466 -DIPVGLGDVFAVGEVNPKFPPIGGCKYAKAIPLGSGGFLDSDTLYGLARDLPRSPRRYT 524
++P+ A VNP FP C LA+++ P
Sbjct: 73 MNLPLFPIGKSAATAVNP-FPKEWRC---------------------LAKNMDDMPILNI 110
Query: 525 AENSVRFGASQDNDDPELRQPLAVDVWKSIVESIEPGSKITILTNGPLTNLAQIIGL--Q 582
EN + + ++ Q L D+ ++ S E K+TI GPL+N+A I +
Sbjct: 111 PENVELWDKIKAENEKYEGQQLLADL---VMNSEE---KVTICVTGPLSNVAWCIDKYGE 164
Query: 583 NSSSVIQDVYIVGGNKGQDNEKGNVFTVPSSKYAEFNMFLDPLAAKAVF 631
+S +++ I+GG + +GNVF + AE+N++ DP +AK VF
Sbjct: 165 KFTSKVEECVIMGG---AVDVRGNVFLPSTDGTAEWNIYWDPASAKTVF 210
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 58/130 (44%), Gaps = 20/130 (15%)
Query: 85 QQVLINAI--SAGPITVFVMGSHTNFAIFLMN-NPHLKKNIEHIYVMGGAIRSDCFNSTN 141
QQ+L + + S +T+ V G +N A + +E +MGGA+
Sbjct: 130 QQLLADLVMNSEEKVTICVTGPLSNVAWCIDKYGEKFTSKVEECVIMGGAV--------- 180
Query: 142 SSQSEQCDSIGNLYPDDSNPYAEFNIFSDPFAAYTVLHS-GIPVTIIPLDATKTIPVSEN 200
D GN++ ++ AE+NI+ DP +A TV G+ + LD+T T+PV
Sbjct: 181 -------DVRGNVFLPSTDGTAEWNIYWDPASAKTVFGCPGLRRIMFSLDSTNTVPVRSP 233
Query: 201 FFVEFERRQN 210
+ F + N
Sbjct: 234 YVQRFGEQTN 243
>pdb|1R4F|A Chain A, Inosine-Adenosine-Guanosine Preferring Nucleoside
Hydrolase From Trypanosoma Vivax: Trp260ala Mutant In
Complex With 3- Deaza-Adenosine
pdb|1R4F|B Chain B, Inosine-Adenosine-Guanosine Preferring Nucleoside
Hydrolase From Trypanosoma Vivax: Trp260ala Mutant In
Complex With 3- Deaza-Adenosine
Length = 339
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 100/229 (43%), Gaps = 35/229 (15%)
Query: 406 GKPVVFDIDMSAGDFLALIYLLKLPVELINLKGILVSSTGWATSATVDVVYDLLHMMGRD 465
K VV D D + DF+A++ LL E + L G L + +V ++ +M +
Sbjct: 14 AKNVVLDHDGNLDDFVAMV-LLASNTEKVRLIGALCTDADCFVENGFNVTGKIMCLMHNN 72
Query: 466 -DIPVGLGDVFAVGEVNPKFPPIGGCKYAKAIPLGSGGFLDSDTLYGLARDLPRSPRRYT 524
++P+ A VNP FP C LA+++ P
Sbjct: 73 MNLPLFPIGKSAATAVNP-FPKEWRC---------------------LAKNMDDMPILNI 110
Query: 525 AENSVRFGASQDNDDPELRQPLAVDVWKSIVESIEPGSKITILTNGPLTNLAQIIGL--Q 582
EN + + ++ Q L D+ ++ S E K+TI GPL+N+A I +
Sbjct: 111 PENVELWDKIKAENEKYEGQQLLADL---VMNSEE---KVTICVTGPLSNVAWCIDKYGE 164
Query: 583 NSSSVIQDVYIVGGNKGQDNEKGNVFTVPSSKYAEFNMFLDPLAAKAVF 631
+S +++ I+GG + +GNVF + AE+N++ DP +AK VF
Sbjct: 165 KFTSKVEECVIMGG---AVDVRGNVFLPSTDGTAEWNIYWDPASAKTVF 210
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 58/130 (44%), Gaps = 20/130 (15%)
Query: 85 QQVLINAI--SAGPITVFVMGSHTNFAIFLMN-NPHLKKNIEHIYVMGGAIRSDCFNSTN 141
QQ+L + + S +T+ V G +N A + +E +MGGA+
Sbjct: 130 QQLLADLVMNSEEKVTICVTGPLSNVAWCIDKYGEKFTSKVEECVIMGGAV--------- 180
Query: 142 SSQSEQCDSIGNLYPDDSNPYAEFNIFSDPFAAYTVLHS-GIPVTIIPLDATKTIPVSEN 200
D GN++ ++ AE+NI+ DP +A TV G+ + LD+T T+PV
Sbjct: 181 -------DVRGNVFLPSTDGTAEWNIYWDPASAKTVFGCPGLRRIMFSLDSTNTVPVRSP 233
Query: 201 FFVEFERRQN 210
+ F + N
Sbjct: 234 YVQRFGEQTN 243
>pdb|3T8I|A Chain A, Structural Analysis Of Thermostable S. Solfataricus
Purine-Specific Nucleoside Hydrolase
pdb|3T8I|B Chain B, Structural Analysis Of Thermostable S. Solfataricus
Purine-Specific Nucleoside Hydrolase
pdb|3T8I|C Chain C, Structural Analysis Of Thermostable S. Solfataricus
Purine-Specific Nucleoside Hydrolase
pdb|3T8I|D Chain D, Structural Analysis Of Thermostable S. Solfataricus
Purine-Specific Nucleoside Hydrolase
Length = 306
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 80/193 (41%), Gaps = 56/193 (29%)
Query: 2 MNRDDIPVGVGGEGGILPNGTILPDVGGYQPIIDQGMSTAGECRYRQAIPVGQRLYVNTN 61
+ + D+PV +G + IL N + +V G GMS N N
Sbjct: 53 IGKQDVPVYLGSQRPILGNWRTVEEVHG-----SNGMS-------------------NWN 88
Query: 62 YGLRKAFLPQGGRKYAPLRQPTAQQVL-INAISAGPITVFVMGSHTNFAIFLMNNPHLKK 120
Y P+ ++ P ++ +L ++ G + + + TN A+ + +P + K
Sbjct: 89 Y-------PEPNKR--PEKEHAIDAILRLSKEHEGELEILAISPLTNIALAYLKDPSVVK 139
Query: 121 NIEHIYVMGGAIRSDCFNSTNSSQSEQCDSIGNLYPDDSNPYAEFNIFSDPFAAYTVLHS 180
++ I++MGGA S GN + P AEFN + DP AA VL +
Sbjct: 140 RVKKIWIMGGAF-----------------SKGN-----TTPIAEFNFWVDPEAAKIVLDA 177
Query: 181 GIPVTIIPLDATK 193
G +TI+P + +
Sbjct: 178 GFDITIVPWEVAE 190
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 59/240 (24%), Positives = 102/240 (42%), Gaps = 55/240 (22%)
Query: 407 KPVVFDIDMSAGDFLALIYLLKLPVELINLKGILVSSTGWATSATVDVVYDLLHMMGRDD 466
+ V+ D D + D +A++ L L G+ + + + V L +G+ D
Sbjct: 2 RKVIVDSDTATDDTIAIL----LASRFFQLLGVTIVAGNVNYNQEVKNALFTLEYIGKQD 57
Query: 467 IPVGLGDVFAVGEVNPKFPPIGGCKYAKAIPLGSGGFLDSDTLYGLARDLPRSPRRYTAE 526
+PV LG + P +G + + + GS G + + P +R E
Sbjct: 58 VPVYLGS---------QRPILGNWRTVEEVH-GSNGMSN--------WNYPEPNKRPEKE 99
Query: 527 NSVRFGASQDNDDPELRQPLAVDVWKSIVESIEPGSKITILTNGPLTNLAQIIGLQNSSS 586
+++ D LR S E ++ IL PLTN+A + L++ S
Sbjct: 100 HAI---------DAILRL------------SKEHEGELEILAISPLTNIA-LAYLKDPSV 137
Query: 587 V--IQDVYIVGGNKGQDNEKGNVFTVPSSKYAEFNMFLDPLAAKAVFESKLEIKLIPLHM 644
V ++ ++I+GG KGN T P AEFN ++DP AAK V ++ +I ++P +
Sbjct: 138 VKRVKKIWIMGGAFS----KGN--TTP---IAEFNFWVDPEAAKIVLDAGFDITIVPWEV 188
>pdb|3B9G|A Chain A, Crystal Structure Of Loop Deletion Mutant Of Trypanosoma
Vivax Nucleoside Hydrolase (3gtvnh) In Complex With Immh
pdb|3B9G|B Chain B, Crystal Structure Of Loop Deletion Mutant Of Trypanosoma
Vivax Nucleoside Hydrolase (3gtvnh) In Complex With Immh
Length = 328
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 100/229 (43%), Gaps = 35/229 (15%)
Query: 406 GKPVVFDIDMSAGDFLALIYLLKLPVELINLKGILVSSTGWATSATVDVVYDLLHMMGRD 465
K VV D D + DF+A++ LL E + L G L + +V ++ +M +
Sbjct: 13 AKNVVLDHDGNLDDFVAMV-LLASNTEKVRLIGALCTDADCFVENGFNVTGKIMCLMHNN 71
Query: 466 -DIPVGLGDVFAVGEVNPKFPPIGGCKYAKAIPLGSGGFLDSDTLYGLARDLPRSPRRYT 524
++P+ A VNP FP C LA+++ P
Sbjct: 72 MNLPLFPIGKSAATAVNP-FPKEWRC---------------------LAKNMDDMPILNI 109
Query: 525 AENSVRFGASQDNDDPELRQPLAVDVWKSIVESIEPGSKITILTNGPLTNLAQIIGL--Q 582
EN + + ++ Q L D+ ++ S E K+TI GPL+N+A I +
Sbjct: 110 PENVELWDKIKAENEKYEGQQLLADL---VMNSEE---KVTICVTGPLSNVAWCIDKYGE 163
Query: 583 NSSSVIQDVYIVGGNKGQDNEKGNVFTVPSSKYAEFNMFLDPLAAKAVF 631
+S +++ I+GG + +GNVF + AE+N++ DP +AK VF
Sbjct: 164 KFTSKVEECVIMGG---AVDVRGNVFLPSTDGTAEWNIYWDPASAKTVF 209
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 58/130 (44%), Gaps = 20/130 (15%)
Query: 85 QQVLINAI--SAGPITVFVMGSHTNFAIFLMN-NPHLKKNIEHIYVMGGAIRSDCFNSTN 141
QQ+L + + S +T+ V G +N A + +E +MGGA+
Sbjct: 129 QQLLADLVMNSEEKVTICVTGPLSNVAWCIDKYGEKFTSKVEECVIMGGAV--------- 179
Query: 142 SSQSEQCDSIGNLYPDDSNPYAEFNIFSDPFAAYTVLHS-GIPVTIIPLDATKTIPVSEN 200
D GN++ ++ AE+NI+ DP +A TV G+ + LD+T T+PV
Sbjct: 180 -------DVRGNVFLPSTDGTAEWNIYWDPASAKTVFGCPGLRRIMFSLDSTNTVPVRSP 232
Query: 201 FFVEFERRQN 210
+ F + N
Sbjct: 233 YVQRFGEQTN 242
>pdb|1EZR|A Chain A, Crystal Structure Of Nucleoside Hydrolase From Leishmania
Major
pdb|1EZR|B Chain B, Crystal Structure Of Nucleoside Hydrolase From Leishmania
Major
pdb|1EZR|C Chain C, Crystal Structure Of Nucleoside Hydrolase From Leishmania
Major
pdb|1EZR|D Chain D, Crystal Structure Of Nucleoside Hydrolase From Leishmania
Major
Length = 314
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 71/156 (45%), Gaps = 15/156 (9%)
Query: 540 PELRQPL----AVDVWKSIVESIEPGSKITILTNGPLTNLAQIIGLQ-NSSSVIQDVYIV 594
PE + L AV + ++ S EP + IT++ G LTN+A + L+ +++V ++
Sbjct: 94 PEFKTKLDGRHAVQLIIDLIMSHEPKT-ITLVPTGGLTNIAMAVRLEPRIVDRVKEVVLM 152
Query: 595 GGNKGQDNEKGNVFTVPSSKYAEFNMFLDPLAAKAVFESKLEIKLIPLHMQRRVASFFKI 654
GG N +S AEFN+F+DP AA VF + ++ L + + +
Sbjct: 153 GGGYHTGN---------ASPVAEFNVFIDPEAAHIVFNESWNVTMVGLDLTHLALATPAV 203
Query: 655 LHKLRDRKKTPESVFSQRLLQGLMTLQQSHHSYHHV 690
++R+ P + Q L ++ H +Y V
Sbjct: 204 QKRVREVGTKPAAFMLQILDFYTKVYEKEHDTYGKV 239
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 53/112 (47%), Gaps = 25/112 (22%)
Query: 84 AQQVLINAISA---GPITVFVMGSHTNFAIFLMNNPHLKKNIEHIYVMGGAIRSDCFNST 140
A Q++I+ I + IT+ G TN A+ + P + ++ + +MGG +++
Sbjct: 105 AVQLIIDLIMSHEPKTITLVPTGGLTNIAMAVRLEPRIVDRVKEVVLMGGG-----YHTG 159
Query: 141 NSSQSEQCDSIGNLYPDDSNPYAEFNIFSDPFAAYTVLHSGIPVTIIPLDAT 192
N+S P AEFN+F DP AA+ V + VT++ LD T
Sbjct: 160 NAS-----------------PVAEFNVFIDPEAAHIVFNESWNVTMVGLDLT 194
>pdb|1KIC|A Chain A, Inosine-adenosine-guanosine Preferring Nucleoside
Hydrolase From Trypanosoma Vivax: Asp10ala Mutant In
Complex With Inosine
pdb|1KIC|B Chain B, Inosine-adenosine-guanosine Preferring Nucleoside
Hydrolase From Trypanosoma Vivax: Asp10ala Mutant In
Complex With Inosine
pdb|1KIE|A Chain A, Inosine-Adenosine-Guanosine Preferring Nucleoside
Hydrolase From Trypanosoma Vivax: Asp10ala Mutant In
Complex With 3- Deaza-Adenosine
pdb|1KIE|B Chain B, Inosine-Adenosine-Guanosine Preferring Nucleoside
Hydrolase From Trypanosoma Vivax: Asp10ala Mutant In
Complex With 3- Deaza-Adenosine
Length = 339
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 99/229 (43%), Gaps = 35/229 (15%)
Query: 406 GKPVVFDIDMSAGDFLALIYLLKLPVELINLKGILVSSTGWATSATVDVVYDLLHMMGRD 465
K VV D + DF+A++ LL E + L G L + +V ++ +M +
Sbjct: 14 AKNVVLDHAGNLDDFVAMV-LLASNTEKVRLIGALCTDADCFVENGFNVTGKIMCLMHNN 72
Query: 466 -DIPVGLGDVFAVGEVNPKFPPIGGCKYAKAIPLGSGGFLDSDTLYGLARDLPRSPRRYT 524
++P+ A VNP FP C LA+++ P
Sbjct: 73 MNLPLFPIGKSAATAVNP-FPKEWRC---------------------LAKNMDDMPILNI 110
Query: 525 AENSVRFGASQDNDDPELRQPLAVDVWKSIVESIEPGSKITILTNGPLTNLAQIIGL--Q 582
EN + + ++ Q L D+ ++ S E K+TI GPL+N+A I +
Sbjct: 111 PENVELWDKIKAENEKYEGQQLLADL---VMNSEE---KVTICVTGPLSNVAWCIDKYGE 164
Query: 583 NSSSVIQDVYIVGGNKGQDNEKGNVFTVPSSKYAEFNMFLDPLAAKAVF 631
+S +++ I+GG + +GNVF + AE+N++ DP +AK VF
Sbjct: 165 KFTSKVEECVIMGG---AVDVRGNVFLPSTDGTAEWNIYWDPASAKTVF 210
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 58/130 (44%), Gaps = 20/130 (15%)
Query: 85 QQVLINAI--SAGPITVFVMGSHTNFAIFLMN-NPHLKKNIEHIYVMGGAIRSDCFNSTN 141
QQ+L + + S +T+ V G +N A + +E +MGGA+
Sbjct: 130 QQLLADLVMNSEEKVTICVTGPLSNVAWCIDKYGEKFTSKVEECVIMGGAV--------- 180
Query: 142 SSQSEQCDSIGNLYPDDSNPYAEFNIFSDPFAAYTVLHS-GIPVTIIPLDATKTIPVSEN 200
D GN++ ++ AE+NI+ DP +A TV G+ + LD+T T+PV
Sbjct: 181 -------DVRGNVFLPSTDGTAEWNIYWDPASAKTVFGCPGLRRIMFSLDSTNTVPVRSP 233
Query: 201 FFVEFERRQN 210
+ F + N
Sbjct: 234 YVQRFGEQTN 243
>pdb|2C40|A Chain A, Crystal Structure Of Inosine-Uridine Preferring Nucleoside
Hydrolase From Bacillus Anthracis At 2.2a Resolution
pdb|2C40|B Chain B, Crystal Structure Of Inosine-Uridine Preferring Nucleoside
Hydrolase From Bacillus Anthracis At 2.2a Resolution
Length = 312
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 52/235 (22%), Positives = 92/235 (39%), Gaps = 37/235 (15%)
Query: 25 PDVGGYQPIIDQ-GMST----AGECRYRQAIPVGQRLYVNTNYGLRKAFLPQGGRKYAPL 79
P + + IID+ G +T A R + P R++ L L + G+ +
Sbjct: 43 PAMSASRKIIDRFGKNTIEVAASNSRGKNPFPKDWRMHAFYVDAL--PILNESGKVVTHV 100
Query: 80 RQPTAQQVLINAI--SAGPITVFVMGSHTNFAIFLMNNPHLKKNIEHIYVMGGAIRSDCF 137
A LI + + T+ G T+ A L P ++ I+ + MGG R+
Sbjct: 101 AAKPAHHHLIETLLQTEEKTTLLFTGPLTDLARALYEAPIIENKIKRLVWMGGTFRT--- 157
Query: 138 NSTNSSQSEQCDSIGNLYPDDSNPYAEFNIFSDPFAAYTVLHSGIPVTIIPLDATKTIPV 197
GN++ + + AE+N F DP A V + I + +I L++T +P+
Sbjct: 158 -------------AGNVHEPEHDGTAEWNSFWDPEAVARVWEANIEIDLITLESTNQVPL 204
Query: 198 SENFFVEFERRQNTYEAQYCFQSLKMIRDTWSGSPPF-----HEAYCMWDSFMAG 247
+ + R Q E +Y + + ++ PP + Y +WD A
Sbjct: 205 TIDI-----REQWAKERKYI--GIDFLGQCYAIVPPLVHFAKNSTYYLWDVLTAA 252
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 47/106 (44%), Gaps = 2/106 (1%)
Query: 558 IEPGSKITILTNGPLTNLAQIIGLQNSSSVIQDVYIVGGNKGQDNEKGNVFTVPSSKYAE 617
++ K T+L GPLT+LA+ L + + + + G GNV AE
Sbjct: 114 LQTEEKTTLLFTGPLTDLAR--ALYEAPIIENKIKRLVWMGGTFRTAGNVHEPEHDGTAE 171
Query: 618 FNMFLDPLAAKAVFESKLEIKLIPLHMQRRVASFFKILHKLRDRKK 663
+N F DP A V+E+ +EI LI L +V I + +K
Sbjct: 172 WNSFWDPEAVARVWEANIEIDLITLESTNQVPLTIDIREQWAKERK 217
>pdb|1MAS|A Chain A, Purine Nucleoside Hydrolase
pdb|1MAS|B Chain B, Purine Nucleoside Hydrolase
pdb|2MAS|A Chain A, Purine Nucleoside Hydrolase With A Transition State
Inhibitor
pdb|2MAS|B Chain B, Purine Nucleoside Hydrolase With A Transition State
Inhibitor
pdb|2MAS|C Chain C, Purine Nucleoside Hydrolase With A Transition State
Inhibitor
pdb|2MAS|D Chain D, Purine Nucleoside Hydrolase With A Transition State
Inhibitor
Length = 314
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 61/120 (50%), Gaps = 11/120 (9%)
Query: 547 AVDVWKSIVESIEPGSKITILTNGPLTNLAQIIGLQ-NSSSVIQDVYIVGGNKGQDNEKG 605
AV++ +V S EP + IT++ G LTN+A L+ +++V ++GG + N
Sbjct: 104 AVNLIIDLVMSHEPKT-ITLVPTGGLTNIAMAARLEPRIVDRVKEVVLMGGGYHEGN--- 159
Query: 606 NVFTVPSSKYAEFNMFLDPLAAKAVFESKLEIKLIPLHMQRRVASFFKILHKLRDRKKTP 665
++ AEFN+ +DP AA VF ++ ++ L + + + IL ++++ P
Sbjct: 160 ------ATSVAEFNIIIDPEAAHIVFNESWQVTMVGLDLTHQALATPPILQRVKEVDTNP 213
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 41/96 (42%), Gaps = 22/96 (22%)
Query: 97 ITVFVMGSHTNFAIFLMNNPHLKKNIEHIYVMGGAIRSDCFNSTNSSQSEQCDSIGNLYP 156
IT+ G TN A+ P + ++ + +MGG ++ N++
Sbjct: 120 ITLVPTGGLTNIAMAARLEPRIVDRVKEVVLMGGG-----YHEGNATS------------ 162
Query: 157 DDSNPYAEFNIFSDPFAAYTVLHSGIPVTIIPLDAT 192
AEFNI DP AA+ V + VT++ LD T
Sbjct: 163 -----VAEFNIIIDPEAAHIVFNESWQVTMVGLDLT 193
>pdb|3FZ0|A Chain A, Inosine-Guanosine Nucleoside Hydrolase (Ig-Nh)
pdb|3FZ0|B Chain B, Inosine-Guanosine Nucleoside Hydrolase (Ig-Nh)
pdb|3FZ0|C Chain C, Inosine-Guanosine Nucleoside Hydrolase (Ig-Nh)
pdb|3FZ0|D Chain D, Inosine-Guanosine Nucleoside Hydrolase (Ig-Nh)
Length = 360
Score = 35.8 bits (81), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 51/116 (43%), Gaps = 19/116 (16%)
Query: 99 VFVMGSHTNFAIFLMNNPHLKKNIEHIYVMGGAIRSDCFNSTNSSQSEQCDSIGNLYPDD 158
+ +G TN A+ L NP L + + G I N T+ S+ GN
Sbjct: 131 LVALGPLTNVALALRLNPDLFSKLGTDTIPGIVI----MNGTSESK-------GN----- 174
Query: 159 SNPYAEFNIFSDPFAAYTVL-HSG--IPVTIIPLDATKTIPVSENFFVEFERRQNT 211
SN AEFN DP A VL H G PV ++ + T P++ F+ + R++T
Sbjct: 175 SNMAAEFNSHCDPEAGVVVLQHKGWKCPVQLVNWEVTVNSPMTWGFYDKLVNREST 230
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 62/160 (38%), Gaps = 29/160 (18%)
Query: 554 IVESIEPGSKIT--ILTNGPLTNLAQIIGL------QNSSSVIQDVYIVGGNKGQDNEKG 605
I+E EP + ++ GPLTN+A + L + + I + I+ G KG
Sbjct: 117 ILEEAEPSDDVVYQLVALGPLTNVALALRLNPDLFSKLGTDTIPGIVIMNGTS---ESKG 173
Query: 606 NVFTVPSSKYAEFNMFLDPLAAKAVFES---KLEIKLIPLHMQRRVASFFKILHKLRDRK 662
N S+ AEFN DP A V + K ++L+ + + KL +R+
Sbjct: 174 N-----SNMAAEFNSHCDPEAGVVVLQHKGWKCPVQLVNWEVTVNSPMTWGFYDKLVNRE 228
Query: 663 KTPE----------SVFSQRLLQGLMTLQQSHHSYHHVDT 692
TP F ++L Q L + H DT
Sbjct: 229 STPNGRVAVNQNKWQEFIEKLFQRLEAFTRIHDDGTRADT 268
>pdb|2BYD|A Chain A, Structure Of Aminoadipate-semialdehyde Dehydrogenase-
Phosphopantetheinyl Transferase
pdb|2C43|A Chain A, Structure Of Aminoadipate-Semialdehyde Dehydrogenase-
Phosphopantetheinyl Transferase In Complex With Coenzyme
A
Length = 323
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 44/105 (41%), Gaps = 13/105 (12%)
Query: 154 LYPDDSNPYAEFNIFSDPFAAYTVLHS------GIPVTIIPLDATKTIPVSENFFVEFER 207
L D SNPY FN Y VL + GI + +IP FF +R
Sbjct: 104 LAKDSSNPYPNFNFNISHQGDYAVLAAEPELQVGIDIMKTSFPGRGSIP---EFFHIMKR 160
Query: 208 RQNTYEAQYCFQSLKMIRDTWSGSPPFHEAYCMWDSFMAGVALSI 252
+ E +++++ +D W+ F+ + + +SF+ + + +
Sbjct: 161 KFTNKE----WETIRSFKDEWTQLDMFYRNWALKESFIKAIGVGL 201
>pdb|2CG5|A Chain A, Structure Of Aminoadipate-Semialdehyde Dehydrogenase-
Phosphopantetheinyl Transferase In Complex With
Cytosolic Acyl Carrier Protein And Coenzyme A
Length = 319
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 44/105 (41%), Gaps = 13/105 (12%)
Query: 154 LYPDDSNPYAEFNIFSDPFAAYTVLHS------GIPVTIIPLDATKTIPVSENFFVEFER 207
L D SNPY FN Y VL + GI + +IP FF +R
Sbjct: 104 LAKDSSNPYPNFNFNISHQGDYAVLAAEPELQVGIDIMKTSFPGRGSIP---EFFHIMKR 160
Query: 208 RQNTYEAQYCFQSLKMIRDTWSGSPPFHEAYCMWDSFMAGVALSI 252
+ E +++++ +D W+ F+ + + +SF+ + + +
Sbjct: 161 KFTNKE----WETIRSFKDEWTQLDMFYRNWALKESFIKAIGVGL 201
>pdb|3EK2|A Chain A, Crystal Structure Of Eonyl-(Acyl Carrier Protein)
Reductase From Burkholderia Pseudomallei 1719b
pdb|3EK2|B Chain B, Crystal Structure Of Eonyl-(Acyl Carrier Protein)
Reductase From Burkholderia Pseudomallei 1719b
pdb|3EK2|C Chain C, Crystal Structure Of Eonyl-(Acyl Carrier Protein)
Reductase From Burkholderia Pseudomallei 1719b
pdb|3EK2|D Chain D, Crystal Structure Of Eonyl-(Acyl Carrier Protein)
Reductase From Burkholderia Pseudomallei 1719b
Length = 271
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 36/78 (46%), Gaps = 7/78 (8%)
Query: 63 GLRKAFLPQGGRKYAPLRQPTAQQVLINAISAGPITVFVMGSHTNFAI---FLMNNPHLK 119
GL KA L R A A+ V +NAISAGPI +F F+ +N LK
Sbjct: 168 GLAKAALEASVRYLAV--SLGAKGVRVNAISAGPIKTLAASGIKSFGKILDFVESNSPLK 225
Query: 120 KN--IEHIYVMGGAIRSD 135
+N IE + G + SD
Sbjct: 226 RNVTIEQVGNAGAFLLSD 243
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.137 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,116,512
Number of Sequences: 62578
Number of extensions: 1105074
Number of successful extensions: 2926
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 2863
Number of HSP's gapped (non-prelim): 47
length of query: 795
length of database: 14,973,337
effective HSP length: 107
effective length of query: 688
effective length of database: 8,277,491
effective search space: 5694913808
effective search space used: 5694913808
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)