BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003794
(795 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|B1KHA5|RIHA_SHEWM Pyrimidine-specific ribonucleoside hydrolase RihA OS=Shewanella
woodyi (strain ATCC 51908 / MS32) GN=rihA PE=3 SV=1
Length = 312
Score = 64.7 bits (156), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 72/166 (43%), Gaps = 31/166 (18%)
Query: 51 PVGQRLYVNTNY----GLRKAFLPQGGRKYAPLRQPTAQQVLINAI--SAGPITVFVMGS 104
P+ + L + N GL LP +AP + TA +++ I S P+T+ G
Sbjct: 70 PLARELIIADNVHGETGLDGPVLPD--PSFAP-QAMTAVELMALKIKQSQAPVTLVPTGP 126
Query: 105 HTNFAIFLMNNPHLKKNIEHIYVMGGAIRSDCFNSTNSSQSEQCDSIGNLYPDDSNPYAE 164
TN A+ L +P L NIE I +MGGA +GN P AE
Sbjct: 127 LTNIALLLATHPELHSNIEQIVLMGGAA-----------------GVGNW-----TPAAE 164
Query: 165 FNIFSDPFAAYTVLHSGIPVTIIPLDATKTIPVSENFFVEFERRQN 210
FNIF DP AA V +GIP+T+ LD T V + +N
Sbjct: 165 FNIFVDPEAADMVFKAGIPITMCGLDVTHQAQVMDEDIARIRAIEN 210
Score = 48.5 bits (114), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 61/261 (23%), Positives = 104/261 (39%), Gaps = 61/261 (23%)
Query: 405 MGKPVVFDIDMSAGDFLALIYLLKLPVELINLKGILVSSTGWATSATVDVVYDLLHMMGR 464
M +P++ D D D +A+I L L + + + S+ T++ +L ++GR
Sbjct: 1 MTRPIILDCDPGHDDAIAII--LALSSDAFSPLAVTTSAGNQTPDKTLNNALRILTLLGR 58
Query: 465 DDIPVGLGDVFAVGEVNPKFPPIGGCKYAKAIPLGSGGFLDSDTLYGLARDLPRSPRRYT 524
DIPV A G V P LAR+L
Sbjct: 59 SDIPV------AGGAVKP-----------------------------LAREL------II 77
Query: 525 AENSVRFGASQDNDDPELRQPLAVDVWKSIVESI-----EPGSKITILTNGPLTNLAQII 579
A+N D P L P + VE + + + +T++ GPLTN+A ++
Sbjct: 78 ADN---VHGETGLDGPVLPDPSFAPQAMTAVELMALKIKQSQAPVTLVPTGPLTNIALLL 134
Query: 580 GLQNS-SSVIQDVYIVGGNKGQDNEKGNVFTVPSSKYAEFNMFLDPLAAKAVFESKLEIK 638
S I+ + ++GG G N + AEFN+F+DP AA VF++ + I
Sbjct: 135 ATHPELHSNIEQIVLMGGAAGVGNW---------TPAAEFNIFVDPEAADMVFKAGIPIT 185
Query: 639 LIPLHMQRRVASFFKILHKLR 659
+ L + + + + ++R
Sbjct: 186 MCGLDVTHQAQVMDEDIARIR 206
>sp|B7LKV4|RIHA_ESCF3 Pyrimidine-specific ribonucleoside hydrolase RihA OS=Escherichia
fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73)
GN=rihA PE=3 SV=1
Length = 311
Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 65/137 (47%), Gaps = 27/137 (19%)
Query: 58 VNTNYGLRKAFLPQGGRKYAPLRQPTAQQVLINAI--SAGPITVFVMGSHTNFAIFLMNN 115
V+ GL LP+ +AP + TA +++ + SA P+T+ G TN A+ L ++
Sbjct: 81 VHGESGLDGPALPE--PTFAP-QNCTAVELMAKTLRESAEPVTIVSTGPQTNVALLLNSH 137
Query: 116 PHLKKNIEHIYVMGGAIRSDCFNSTNSSQSEQCDSIGNLYPDDSNPYAEFNIFSDPFAAY 175
P L I I +MGGA+ IGN P AEFNI+ DP AA
Sbjct: 138 PELHSKIARIVIMGGAM-----------------GIGNW-----TPAAEFNIYVDPEAAE 175
Query: 176 TVLHSGIPVTIIPLDAT 192
V SGIPV + LD T
Sbjct: 176 IVFQSGIPVVMAGLDVT 192
Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 67/264 (25%), Positives = 107/264 (40%), Gaps = 67/264 (25%)
Query: 405 MGKPVVFDIDMSAGDFLALIYLLKLPVELINLKGILVSSTGWATSATVDVVYDLLHMMGR 464
M P++ D D D +A++ L P +++K I S+ T+ V +L ++ R
Sbjct: 1 MALPILLDCDPGHDDAIAIVLALASPE--LDVKAITSSAGNQTPEKTLRNVLRMLTLLNR 58
Query: 465 DDIPVGLGDVFAVGEVNPKFPPIGGCKYAKAIPLGSGGFLDSDTLYGLARDLPRSPRRYT 524
DIPV A G V P L RDL
Sbjct: 59 TDIPV------AGGAVKP-----------------------------LMRDL------II 77
Query: 525 AENSVRFGASQDNDDPELRQPL-------AVDVW-KSIVESIEPGSKITILTNGPLTNLA 576
A+N D P L +P AV++ K++ ES EP +TI++ GP TN+A
Sbjct: 78 ADN---VHGESGLDGPALPEPTFAPQNCTAVELMAKTLRESAEP---VTIVSTGPQTNVA 131
Query: 577 QIIGLQNS-SSVIQDVYIVGGNKGQDNEKGNVFTVPSSKYAEFNMFLDPLAAKAVFESKL 635
++ S I + I+GG G N + AEFN+++DP AA+ VF+S +
Sbjct: 132 LLLNSHPELHSKIARIVIMGGAMGIGN---------WTPAAEFNIYVDPEAAEIVFQSGI 182
Query: 636 EIKLIPLHMQRRVASFFKILHKLR 659
+ + L + + + + R
Sbjct: 183 PVVMAGLDVTHKAQIHVEDTERFR 206
>sp|Q8ZQY4|RIHA_SALTY Pyrimidine-specific ribonucleoside hydrolase RihA OS=Salmonella
typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
GN=rihA PE=3 SV=1
Length = 311
Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 60/128 (46%), Gaps = 33/128 (25%)
Query: 67 AFLPQGGRKYAPLRQPTAQQVLINAI--SAGPITVFVMGSHTNFAIFLMNNPHLKKNIEH 124
+F PQ G TA +++ + SA P+T+ G TN A+ L ++P L I
Sbjct: 96 SFAPQSG---------TAVELMAKTLRESAQPVTIVSTGPQTNVALLLNSHPELHTKIAR 146
Query: 125 IYVMGGAIRSDCFNSTNSSQSEQCDSIGNLYPDDSNPYAEFNIFSDPFAAYTVLHSGIPV 184
I +MGGA+ ++GN P AEFNI+ DP AA V SGIPV
Sbjct: 147 IVIMGGAM-----------------ALGNW-----TPAAEFNIYVDPEAAEIVFQSGIPV 184
Query: 185 TIIPLDAT 192
+ LD T
Sbjct: 185 VMAGLDVT 192
Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 64/257 (24%), Positives = 105/257 (40%), Gaps = 53/257 (20%)
Query: 405 MGKPVVFDIDMSAGDFLALIYLLKLPVELINLKGILVSSTGWATSATVDVVYDLLHMMGR 464
M P++ D D D +AL+ L P + +K I S+ T+ V +L ++ R
Sbjct: 1 MALPIIIDCDPGHDDAIALVLALASPE--LEVKAITSSAGNQTPEKTLRNVLRMLTLLKR 58
Query: 465 DDIPVGLGDVFAVGEVNPKFPPIGGCKYAKAIPLGSGGFLDSDTLYGLA-RDLPRSPRRY 523
DIPV A G V P + +D ++G + D P P
Sbjct: 59 LDIPV------AGGAVKPLM----------------RELIIADNVHGESGLDGPALP--- 93
Query: 524 TAENSVRFGASQDNDDPELRQPLAVDVWKSIVESIEPGSKITILTNGPLTNLAQIIGLQN 583
E S A Q EL K++ ES +P +TI++ GP TN+A ++
Sbjct: 94 --EPSF---APQSGTAVELMA-------KTLRESAQP---VTIVSTGPQTNVALLLNSHP 138
Query: 584 S-SSVIQDVYIVGGNKGQDNEKGNVFTVPSSKYAEFNMFLDPLAAKAVFESKLEIKLIPL 642
+ I + I+GG N + AEFN+++DP AA+ VF+S + + + L
Sbjct: 139 ELHTKIARIVIMGGAMALGN---------WTPAAEFNIYVDPEAAEIVFQSGIPVVMAGL 189
Query: 643 HMQRRVASFFKILHKLR 659
+ + + + R
Sbjct: 190 DVTHKAQIHAADIERFR 206
>sp|B4TB65|RIHA_SALHS Pyrimidine-specific ribonucleoside hydrolase RihA OS=Salmonella
heidelberg (strain SL476) GN=rihA PE=3 SV=1
Length = 311
Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 60/128 (46%), Gaps = 33/128 (25%)
Query: 67 AFLPQGGRKYAPLRQPTAQQVLINAI--SAGPITVFVMGSHTNFAIFLMNNPHLKKNIEH 124
+F PQ G TA +++ + SA P+T+ G TN A+ L ++P L I
Sbjct: 96 SFAPQSG---------TAVELMAKTLRESAQPVTIVSTGPQTNVALLLNSHPELHTKIAR 146
Query: 125 IYVMGGAIRSDCFNSTNSSQSEQCDSIGNLYPDDSNPYAEFNIFSDPFAAYTVLHSGIPV 184
I +MGGA+ ++GN P AEFNI+ DP AA V SGIPV
Sbjct: 147 IVIMGGAM-----------------ALGNW-----TPAAEFNIYVDPEAAEIVFQSGIPV 184
Query: 185 TIIPLDAT 192
+ LD T
Sbjct: 185 VMAGLDVT 192
Score = 46.6 bits (109), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 64/257 (24%), Positives = 105/257 (40%), Gaps = 53/257 (20%)
Query: 405 MGKPVVFDIDMSAGDFLALIYLLKLPVELINLKGILVSSTGWATSATVDVVYDLLHMMGR 464
M P++ D D D +AL+ L P + +K I S+ T+ V +L ++ R
Sbjct: 1 MALPIIIDCDPGHDDAIALVLALASPE--LEVKAITSSAGNQTPEKTLRNVLRMLTLLKR 58
Query: 465 DDIPVGLGDVFAVGEVNPKFPPIGGCKYAKAIPLGSGGFLDSDTLYGLA-RDLPRSPRRY 523
DIPV A G V P + +D ++G + D P P
Sbjct: 59 PDIPV------AGGAVKPLM----------------RELIIADNVHGESGLDGPALP--- 93
Query: 524 TAENSVRFGASQDNDDPELRQPLAVDVWKSIVESIEPGSKITILTNGPLTNLAQIIGLQN 583
E S A Q EL K++ ES +P +TI++ GP TN+A ++
Sbjct: 94 --EPSF---APQSGTAVELMA-------KTLRESAQP---VTIVSTGPQTNVALLLNSHP 138
Query: 584 S-SSVIQDVYIVGGNKGQDNEKGNVFTVPSSKYAEFNMFLDPLAAKAVFESKLEIKLIPL 642
+ I + I+GG N + AEFN+++DP AA+ VF+S + + + L
Sbjct: 139 ELHTKIARIVIMGGAMALGN---------WTPAAEFNIYVDPEAAEIVFQSGIPVVMAGL 189
Query: 643 HMQRRVASFFKILHKLR 659
+ + + + R
Sbjct: 190 DVTHKAQIHAADIERFR 206
>sp|B5R809|RIHA_SALG2 Pyrimidine-specific ribonucleoside hydrolase RihA OS=Salmonella
gallinarum (strain 287/91 / NCTC 13346) GN=rihA PE=3
SV=1
Length = 311
Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 66/137 (48%), Gaps = 27/137 (19%)
Query: 58 VNTNYGLRKAFLPQGGRKYAPLRQPTAQQVLINAI--SAGPITVFVMGSHTNFAIFLMNN 115
V+ GL LP+ +AP + TA +++ + SA P+T+ G TN A+ L ++
Sbjct: 81 VHGESGLNGPALPE--PSFAP-QSGTAVELMAKTLRESAQPVTIVSTGPQTNVALLLNSH 137
Query: 116 PHLKKNIEHIYVMGGAIRSDCFNSTNSSQSEQCDSIGNLYPDDSNPYAEFNIFSDPFAAY 175
P L I I +MGGA+ ++GN P AEFNI+ DP AA
Sbjct: 138 PELHTKIARIVIMGGAM-----------------ALGNW-----TPAAEFNIYVDPEAAE 175
Query: 176 TVLHSGIPVTIIPLDAT 192
V SGIPV + LD T
Sbjct: 176 IVFQSGIPVVMAGLDVT 192
Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 66/264 (25%), Positives = 107/264 (40%), Gaps = 67/264 (25%)
Query: 405 MGKPVVFDIDMSAGDFLALIYLLKLPVELINLKGILVSSTGWATSATVDVVYDLLHMMGR 464
M P++ D D D +AL+ L P + +K I S+ T+ V +L ++ R
Sbjct: 1 MALPIIIDCDPGHDDAIALVLALASPE--LEVKAITSSAGNQTPEKTLRNVLRMLTLLKR 58
Query: 465 DDIPVGLGDVFAVGEVNPKFPPIGGCKYAKAIPLGSGGFLDSDTLYGLARDLPRSPRRYT 524
DIPV A G V P L R+L
Sbjct: 59 PDIPV------AGGAVKP-----------------------------LMREL------II 77
Query: 525 AENSVRFGASQDNDDPELRQP-------LAVDVW-KSIVESIEPGSKITILTNGPLTNLA 576
A+N G S N P L +P AV++ K++ ES +P +TI++ GP TN+A
Sbjct: 78 ADNV--HGESGLNG-PALPEPSFAPQSGTAVELMAKTLRESAQP---VTIVSTGPQTNVA 131
Query: 577 QIIGLQNS-SSVIQDVYIVGGNKGQDNEKGNVFTVPSSKYAEFNMFLDPLAAKAVFESKL 635
++ + I + I+GG N + AEFN+++DP AA+ VF+S +
Sbjct: 132 LLLNSHPELHTKIARIVIMGGAMALGN---------WTPAAEFNIYVDPEAAEIVFQSGI 182
Query: 636 EIKLIPLHMQRRVASFFKILHKLR 659
+ + L + + + + R
Sbjct: 183 PVVMAGLDVTHKAQIHAADIERFR 206
>sp|B5QVR2|RIHA_SALEP Pyrimidine-specific ribonucleoside hydrolase RihA OS=Salmonella
enteritidis PT4 (strain P125109) GN=rihA PE=3 SV=1
Length = 311
Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 66/137 (48%), Gaps = 27/137 (19%)
Query: 58 VNTNYGLRKAFLPQGGRKYAPLRQPTAQQVLINAI--SAGPITVFVMGSHTNFAIFLMNN 115
V+ GL LP+ +AP + TA +++ + SA P+T+ G TN A+ L ++
Sbjct: 81 VHGESGLNGPALPE--PSFAP-QSGTAVELMAKTLRESAQPVTIVSTGPQTNVALLLNSH 137
Query: 116 PHLKKNIEHIYVMGGAIRSDCFNSTNSSQSEQCDSIGNLYPDDSNPYAEFNIFSDPFAAY 175
P L I I +MGGA+ ++GN P AEFNI+ DP AA
Sbjct: 138 PELHTKIARIVIMGGAM-----------------ALGNW-----TPAAEFNIYVDPEAAE 175
Query: 176 TVLHSGIPVTIIPLDAT 192
V SGIPV + LD T
Sbjct: 176 IVFQSGIPVVMAGLDVT 192
Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 66/264 (25%), Positives = 107/264 (40%), Gaps = 67/264 (25%)
Query: 405 MGKPVVFDIDMSAGDFLALIYLLKLPVELINLKGILVSSTGWATSATVDVVYDLLHMMGR 464
M P++ D D D +AL+ L P + +K I S+ T+ V +L ++ R
Sbjct: 1 MALPIIIDCDPGHDDAIALVLALASPE--LEVKAITSSAGNQTPEKTLRNVLRMLTLLKR 58
Query: 465 DDIPVGLGDVFAVGEVNPKFPPIGGCKYAKAIPLGSGGFLDSDTLYGLARDLPRSPRRYT 524
DIPV A G V P L R+L
Sbjct: 59 PDIPV------AGGAVKP-----------------------------LMREL------II 77
Query: 525 AENSVRFGASQDNDDPELRQP-------LAVDVW-KSIVESIEPGSKITILTNGPLTNLA 576
A+N G S N P L +P AV++ K++ ES +P +TI++ GP TN+A
Sbjct: 78 ADNV--HGESGLNG-PALPEPSFAPQSGTAVELMAKTLRESAQP---VTIVSTGPQTNVA 131
Query: 577 QIIGLQNS-SSVIQDVYIVGGNKGQDNEKGNVFTVPSSKYAEFNMFLDPLAAKAVFESKL 635
++ + I + I+GG N + AEFN+++DP AA+ VF+S +
Sbjct: 132 LLLNSHPELHTKIARIVIMGGAMALGN---------WTPAAEFNIYVDPEAAEIVFQSGI 182
Query: 636 EIKLIPLHMQRRVASFFKILHKLR 659
+ + L + + + + R
Sbjct: 183 PVVMAGLDVTHKAQIHAADIERFR 206
>sp|A7ZXS0|RIHA_ECOHS Pyrimidine-specific ribonucleoside hydrolase RihA OS=Escherichia
coli O9:H4 (strain HS) GN=rihA PE=3 SV=1
Length = 311
Score = 62.4 bits (150), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 65/137 (47%), Gaps = 27/137 (19%)
Query: 58 VNTNYGLRKAFLPQGGRKYAPLRQPTAQQVLINAI--SAGPITVFVMGSHTNFAIFLMNN 115
V+ GL LP+ +AP + TA +++ + SA PIT+ G TN A+ L ++
Sbjct: 81 VHGESGLDGPALPEPA--FAP-QNCTAVELMAKTLRESAEPITIVSTGPQTNVALLLNSH 137
Query: 116 PHLKKNIEHIYVMGGAIRSDCFNSTNSSQSEQCDSIGNLYPDDSNPYAEFNIFSDPFAAY 175
P L I I +MGGA+ +GN P AEFNI+ DP AA
Sbjct: 138 PELHSKIARIVIMGGAM-----------------GLGNW-----TPAAEFNIYVDPEAAE 175
Query: 176 TVLHSGIPVTIIPLDAT 192
V SGIPV + LD T
Sbjct: 176 IVFQSGIPVVMAGLDVT 192
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 66/257 (25%), Positives = 107/257 (41%), Gaps = 53/257 (20%)
Query: 405 MGKPVVFDIDMSAGDFLALIYLLKLPVELINLKGILVSSTGWATSATVDVVYDLLHMMGR 464
M P++ D D D +A++ L P +++K I S+ T+ V +L ++ R
Sbjct: 1 MALPILLDCDPGHDDAIAIVLALASPE--LDVKAITSSAGNQTPEKTLRNVLRMLTLLNR 58
Query: 465 DDIPVGLGDVFAVGEVNPKFPPIGGCKYAKAIPLGSGGFLDSDTLYGLA-RDLPRSPRRY 523
DIPV A G V P + + +D ++G + D P P
Sbjct: 59 TDIPV------AGGAVKPLMREL----------------IIADNVHGESGLDGPALPEPA 96
Query: 524 TAENSVRFGASQDNDDPELRQPLAVDVWKSIVESIEPGSKITILTNGPLTNLAQIIGLQN 583
A Q+ EL K++ ES EP ITI++ GP TN+A ++
Sbjct: 97 FA--------PQNCTAVELMA-------KTLRESAEP---ITIVSTGPQTNVALLLNSHP 138
Query: 584 S-SSVIQDVYIVGGNKGQDNEKGNVFTVPSSKYAEFNMFLDPLAAKAVFESKLEIKLIPL 642
S I + I+GG G N + AEFN+++DP AA+ VF+S + + + L
Sbjct: 139 ELHSKIARIVIMGGAMGLGN---------WTPAAEFNIYVDPEAAEIVFQSGIPVVMAGL 189
Query: 643 HMQRRVASFFKILHKLR 659
+ R + + R
Sbjct: 190 DVTHRAQIHVEDTERFR 206
>sp|Q8Z8H0|RIHA_SALTI Pyrimidine-specific ribonucleoside hydrolase RihA OS=Salmonella
typhi GN=rihA PE=3 SV=1
Length = 311
Score = 62.4 bits (150), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 60/128 (46%), Gaps = 33/128 (25%)
Query: 67 AFLPQGGRKYAPLRQPTAQQVLINAI--SAGPITVFVMGSHTNFAIFLMNNPHLKKNIEH 124
+F PQ G TA +++ + SA P+T+ G TN A+ L ++P L I
Sbjct: 96 SFAPQSG---------TAVELMAKTLRESAQPVTIVSTGPQTNVALLLNSHPELHTKIAR 146
Query: 125 IYVMGGAIRSDCFNSTNSSQSEQCDSIGNLYPDDSNPYAEFNIFSDPFAAYTVLHSGIPV 184
I +MGGA+ ++GN P AEFNI+ DP AA V SGIPV
Sbjct: 147 IVIMGGAM-----------------ALGNW-----TPAAEFNIYVDPEAAEIVFQSGIPV 184
Query: 185 TIIPLDAT 192
+ LD T
Sbjct: 185 VMAGLDVT 192
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 66/271 (24%), Positives = 111/271 (40%), Gaps = 53/271 (19%)
Query: 405 MGKPVVFDIDMSAGDFLALIYLLKLPVELINLKGILVSSTGWATSATVDVVYDLLHMMGR 464
M P++ D D D +AL+ L P + +K I S+ T+ V +L ++ R
Sbjct: 1 MALPIIIDCDPGHDDAIALVLALASPE--LEVKAITSSAGNQTPEKTLRNVLRMLTLLKR 58
Query: 465 DDIPVGLGDVFAVGEVNPKFPPIGGCKYAKAIPLGSGGFLDSDTLYGLA-RDLPRSPRRY 523
DIPV A G V P + +D ++G + D P P
Sbjct: 59 PDIPV------AGGAVKPLM----------------RELIIADNVHGESGLDGPALP--- 93
Query: 524 TAENSVRFGASQDNDDPELRQPLAVDVWKSIVESIEPGSKITILTNGPLTNLAQIIGLQN 583
E S A Q EL K++ ES +P +TI++ GP TN+A ++
Sbjct: 94 --EPSF---APQSGTAVELMA-------KTLRESAQP---VTIVSTGPQTNVALLLNSHP 138
Query: 584 S-SSVIQDVYIVGGNKGQDNEKGNVFTVPSSKYAEFNMFLDPLAAKAVFESKLEIKLIPL 642
+ I + I+GG N + AEFN+++DP AA+ VF+S + + + L
Sbjct: 139 ELHTKIARIVIMGGAMALGN---------WTPAAEFNIYVDPEAAEIVFQSGIPVVMAGL 189
Query: 643 HMQRRVASFFKILHKLRDRKKTPESVFSQRL 673
+ + + + RD ++ ++ L
Sbjct: 190 DVTHKAQIHAADIERFRDIGNPISTIVAELL 220
>sp|A9MUJ0|RIHA_SALPB Pyrimidine-specific ribonucleoside hydrolase RihA OS=Salmonella
paratyphi B (strain ATCC BAA-1250 / SPB7) GN=rihA PE=3
SV=1
Length = 311
Score = 62.4 bits (150), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 60/128 (46%), Gaps = 33/128 (25%)
Query: 67 AFLPQGGRKYAPLRQPTAQQVLINAI--SAGPITVFVMGSHTNFAIFLMNNPHLKKNIEH 124
+F PQ G TA +++ + SA P+T+ G TN A+ L ++P L I
Sbjct: 96 SFAPQSG---------TAVELMAKTLRESAQPVTIVSTGPQTNVALLLNSHPELHTKIAR 146
Query: 125 IYVMGGAIRSDCFNSTNSSQSEQCDSIGNLYPDDSNPYAEFNIFSDPFAAYTVLHSGIPV 184
I +MGGA+ ++GN P AEFNI+ DP AA V SGIPV
Sbjct: 147 IVIMGGAM-----------------ALGNW-----TPAAEFNIYVDPEAAEIVFQSGIPV 184
Query: 185 TIIPLDAT 192
+ LD T
Sbjct: 185 VMAGLDVT 192
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 66/271 (24%), Positives = 111/271 (40%), Gaps = 53/271 (19%)
Query: 405 MGKPVVFDIDMSAGDFLALIYLLKLPVELINLKGILVSSTGWATSATVDVVYDLLHMMGR 464
M P++ D D D +AL+ L P + +K I S+ T+ V +L ++ R
Sbjct: 1 MALPIIIDCDPGHDDAIALVLALASPE--LEVKAITSSAGNQTPEKTLRNVLRMLTLLKR 58
Query: 465 DDIPVGLGDVFAVGEVNPKFPPIGGCKYAKAIPLGSGGFLDSDTLYGLA-RDLPRSPRRY 523
DIPV A G V P + +D ++G + D P P
Sbjct: 59 PDIPV------AGGAVKPLM----------------RELIIADNVHGESGLDGPALP--- 93
Query: 524 TAENSVRFGASQDNDDPELRQPLAVDVWKSIVESIEPGSKITILTNGPLTNLAQIIGLQN 583
E S A Q EL K++ ES +P +TI++ GP TN+A ++
Sbjct: 94 --EPSF---APQSGTAVELMA-------KTLRESAQP---VTIVSTGPQTNVALLLNSHP 138
Query: 584 S-SSVIQDVYIVGGNKGQDNEKGNVFTVPSSKYAEFNMFLDPLAAKAVFESKLEIKLIPL 642
+ I + I+GG N + AEFN+++DP AA+ VF+S + + + L
Sbjct: 139 ELHTKIARIVIMGGAMALGN---------WTPAAEFNIYVDPEAAEIVFQSGIPVVMAGL 189
Query: 643 HMQRRVASFFKILHKLRDRKKTPESVFSQRL 673
+ + + + RD ++ ++ L
Sbjct: 190 DVTHKAQIHAADIERFRDIGNPISTIVAELL 220
>sp|B1IYF7|RIHA_ECOLC Pyrimidine-specific ribonucleoside hydrolase RihA OS=Escherichia
coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=rihA PE=3
SV=1
Length = 311
Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 65/137 (47%), Gaps = 27/137 (19%)
Query: 58 VNTNYGLRKAFLPQGGRKYAPLRQPTAQQVLINAI--SAGPITVFVMGSHTNFAIFLMNN 115
V+ GL LP+ +AP + TA +++ + SA P+T+ G TN A+ L ++
Sbjct: 81 VHGESGLDGPALPEPA--FAP-QNCTAVELMAKTLRESAEPVTIVSTGPQTNVALLLNSH 137
Query: 116 PHLKKNIEHIYVMGGAIRSDCFNSTNSSQSEQCDSIGNLYPDDSNPYAEFNIFSDPFAAY 175
P L I I +MGGA+ +GN P AEFNI+ DP AA
Sbjct: 138 PELHSKIARIVIMGGAM-----------------GLGNW-----TPAAEFNIYVDPEAAE 175
Query: 176 TVLHSGIPVTIIPLDAT 192
V SGIPV + LD T
Sbjct: 176 IVFQSGIPVVMAGLDVT 192
Score = 50.4 bits (119), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 64/257 (24%), Positives = 107/257 (41%), Gaps = 53/257 (20%)
Query: 405 MGKPVVFDIDMSAGDFLALIYLLKLPVELINLKGILVSSTGWATSATVDVVYDLLHMMGR 464
M P++ D D D +A++ L P +++K I S+ T+ V +L ++ R
Sbjct: 1 MALPILLDCDPGHDDAIAIVLALASPE--LDVKAITSSAGNQTPEKTLRNVLRMLTLLNR 58
Query: 465 DDIPVGLGDVFAVGEVNPKFPPIGGCKYAKAIPLGSGGFLDSDTLYGLA-RDLPRSPRRY 523
DIPV A G V P + + +D ++G + D P P
Sbjct: 59 TDIPV------AGGAVKPLMREL----------------IIADNVHGESGLDGPALPEPA 96
Query: 524 TAENSVRFGASQDNDDPELRQPLAVDVWKSIVESIEPGSKITILTNGPLTNLAQIIGLQN 583
A Q+ EL K++ ES EP +TI++ GP TN+A ++
Sbjct: 97 FA--------PQNCTAVELMA-------KTLRESAEP---VTIVSTGPQTNVALLLNSHP 138
Query: 584 S-SSVIQDVYIVGGNKGQDNEKGNVFTVPSSKYAEFNMFLDPLAAKAVFESKLEIKLIPL 642
S I + I+GG G N + AEFN+++DP AA+ VF+S + + + L
Sbjct: 139 ELHSKIARIVIMGGAMGLGN---------WTPAAEFNIYVDPEAAEIVFQSGIPVVMAGL 189
Query: 643 HMQRRVASFFKILHKLR 659
+ + + + R
Sbjct: 190 DVTHKAQIHVEDTERFR 206
>sp|B6I163|RIHA_ECOSE Pyrimidine-specific ribonucleoside hydrolase RihA OS=Escherichia
coli (strain SE11) GN=rihA PE=3 SV=1
Length = 311
Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 65/137 (47%), Gaps = 27/137 (19%)
Query: 58 VNTNYGLRKAFLPQGGRKYAPLRQPTAQQVLINAI--SAGPITVFVMGSHTNFAIFLMNN 115
V+ GL LP+ +AP + TA +++ + SA P+T+ G TN A+ L ++
Sbjct: 81 VHGESGLDGPALPEPA--FAP-QNCTAVELMAKTLRESAEPVTIVSTGPQTNVALLLNSH 137
Query: 116 PHLKKNIEHIYVMGGAIRSDCFNSTNSSQSEQCDSIGNLYPDDSNPYAEFNIFSDPFAAY 175
P L I I +MGGA+ +GN P AEFNI+ DP AA
Sbjct: 138 PELHSKIARIVIMGGAM-----------------GLGNW-----TPAAEFNIYVDPEAAE 175
Query: 176 TVLHSGIPVTIIPLDAT 192
V SGIPV + LD T
Sbjct: 176 IVFQSGIPVVMAGLDVT 192
Score = 50.1 bits (118), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 64/257 (24%), Positives = 107/257 (41%), Gaps = 53/257 (20%)
Query: 405 MGKPVVFDIDMSAGDFLALIYLLKLPVELINLKGILVSSTGWATSATVDVVYDLLHMMGR 464
M P++ D D D +A++ L P +++K I S+ T+ V +L ++ R
Sbjct: 1 MALPILLDCDPGHDDAIAIVLALASPE--LDVKAITSSAGNQTPEKTLRNVLRMLTLLNR 58
Query: 465 DDIPVGLGDVFAVGEVNPKFPPIGGCKYAKAIPLGSGGFLDSDTLYGLA-RDLPRSPRRY 523
DIPV A G V P + + +D ++G + D P P
Sbjct: 59 TDIPV------AGGAVKPLMREL----------------IIADNVHGESGLDGPALPEPA 96
Query: 524 TAENSVRFGASQDNDDPELRQPLAVDVWKSIVESIEPGSKITILTNGPLTNLAQIIGLQN 583
A Q+ EL K++ ES EP +TI++ GP TN+A ++
Sbjct: 97 FA--------PQNCTAVELMA-------KTLRESAEP---VTIVSTGPQTNVALLLNSHP 138
Query: 584 S-SSVIQDVYIVGGNKGQDNEKGNVFTVPSSKYAEFNMFLDPLAAKAVFESKLEIKLIPL 642
S I + I+GG G N + AEFN+++DP AA+ VF+S + + + L
Sbjct: 139 ELHSKIARIVIMGGAMGLGN---------WTPAAEFNIYVDPEAAEIVFQSGIPVVMAGL 189
Query: 643 HMQRRVASFFKILHKLR 659
+ + + + R
Sbjct: 190 DVTHKAQIHVEDTERFR 206
>sp|B7L9J7|RIHA_ECO55 Pyrimidine-specific ribonucleoside hydrolase RihA OS=Escherichia
coli (strain 55989 / EAEC) GN=rihA PE=3 SV=1
Length = 311
Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 65/137 (47%), Gaps = 27/137 (19%)
Query: 58 VNTNYGLRKAFLPQGGRKYAPLRQPTAQQVLINAI--SAGPITVFVMGSHTNFAIFLMNN 115
V+ GL LP+ +AP + TA +++ + SA P+T+ G TN A+ L ++
Sbjct: 81 VHGESGLDGPALPEPA--FAP-QNCTAVELMAKTLRESAEPVTIVSTGPQTNVALLLNSH 137
Query: 116 PHLKKNIEHIYVMGGAIRSDCFNSTNSSQSEQCDSIGNLYPDDSNPYAEFNIFSDPFAAY 175
P L I I +MGGA+ +GN P AEFNI+ DP AA
Sbjct: 138 PELHSKIARIVIMGGAM-----------------GLGNW-----TPAAEFNIYVDPEAAE 175
Query: 176 TVLHSGIPVTIIPLDAT 192
V SGIPV + LD T
Sbjct: 176 IVFQSGIPVVMAGLDVT 192
Score = 50.1 bits (118), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 64/257 (24%), Positives = 107/257 (41%), Gaps = 53/257 (20%)
Query: 405 MGKPVVFDIDMSAGDFLALIYLLKLPVELINLKGILVSSTGWATSATVDVVYDLLHMMGR 464
M P++ D D D +A++ L P +++K I S+ T+ V +L ++ R
Sbjct: 1 MALPILLDCDPGHDDAIAIVLALASPE--LDVKAITSSAGNQTPEKTLRNVLRMLTLLNR 58
Query: 465 DDIPVGLGDVFAVGEVNPKFPPIGGCKYAKAIPLGSGGFLDSDTLYGLA-RDLPRSPRRY 523
DIPV A G V P + + +D ++G + D P P
Sbjct: 59 TDIPV------AGGAVKPLMREL----------------IIADNVHGESGLDGPALPEPA 96
Query: 524 TAENSVRFGASQDNDDPELRQPLAVDVWKSIVESIEPGSKITILTNGPLTNLAQIIGLQN 583
A Q+ EL K++ ES EP +TI++ GP TN+A ++
Sbjct: 97 FA--------PQNCTAVELMA-------KTLRESAEP---VTIVSTGPQTNVALLLNSHP 138
Query: 584 S-SSVIQDVYIVGGNKGQDNEKGNVFTVPSSKYAEFNMFLDPLAAKAVFESKLEIKLIPL 642
S I + I+GG G N + AEFN+++DP AA+ VF+S + + + L
Sbjct: 139 ELHSKIARIVIMGGAMGLGN---------WTPAAEFNIYVDPEAAEIVFQSGIPVVMAGL 189
Query: 643 HMQRRVASFFKILHKLR 659
+ + + + R
Sbjct: 190 DVTHKAQIHVEDTERFR 206
>sp|A7ZJ42|RIHA_ECO24 Pyrimidine-specific ribonucleoside hydrolase RihA OS=Escherichia
coli O139:H28 (strain E24377A / ETEC) GN=rihA PE=3 SV=1
Length = 311
Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 65/137 (47%), Gaps = 27/137 (19%)
Query: 58 VNTNYGLRKAFLPQGGRKYAPLRQPTAQQVLINAI--SAGPITVFVMGSHTNFAIFLMNN 115
V+ GL LP+ +AP + TA +++ + SA P+T+ G TN A+ L ++
Sbjct: 81 VHGESGLDGPALPEPA--FAP-QNCTAVELMAKTLRESAEPVTIVSTGPQTNVALLLNSH 137
Query: 116 PHLKKNIEHIYVMGGAIRSDCFNSTNSSQSEQCDSIGNLYPDDSNPYAEFNIFSDPFAAY 175
P L I I +MGGA+ +GN P AEFNI+ DP AA
Sbjct: 138 PELHSKIARIVIMGGAM-----------------GLGNW-----TPAAEFNIYVDPEAAE 175
Query: 176 TVLHSGIPVTIIPLDAT 192
V SGIPV + LD T
Sbjct: 176 IVFQSGIPVVMAGLDVT 192
Score = 50.1 bits (118), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 64/257 (24%), Positives = 107/257 (41%), Gaps = 53/257 (20%)
Query: 405 MGKPVVFDIDMSAGDFLALIYLLKLPVELINLKGILVSSTGWATSATVDVVYDLLHMMGR 464
M P++ D D D +A++ L P +++K I S+ T+ V +L ++ R
Sbjct: 1 MALPILLDCDPGHDDAIAIVLALASPE--LDVKAITSSAGNQTPEKTLRNVLRMLTLLNR 58
Query: 465 DDIPVGLGDVFAVGEVNPKFPPIGGCKYAKAIPLGSGGFLDSDTLYGLA-RDLPRSPRRY 523
DIPV A G V P + + +D ++G + D P P
Sbjct: 59 TDIPV------AGGAVKPLMREL----------------IIADNVHGESGLDGPALPEPA 96
Query: 524 TAENSVRFGASQDNDDPELRQPLAVDVWKSIVESIEPGSKITILTNGPLTNLAQIIGLQN 583
A Q+ EL K++ ES EP +TI++ GP TN+A ++
Sbjct: 97 FA--------PQNCTAVELMA-------KTLRESAEP---VTIVSTGPQTNVALLLNSHP 138
Query: 584 S-SSVIQDVYIVGGNKGQDNEKGNVFTVPSSKYAEFNMFLDPLAAKAVFESKLEIKLIPL 642
S I + I+GG G N + AEFN+++DP AA+ VF+S + + + L
Sbjct: 139 ELHSKIARIVIMGGAMGLGN---------WTPAAEFNIYVDPEAAEIVFQSGIPVVMAGL 189
Query: 643 HMQRRVASFFKILHKLR 659
+ + + + R
Sbjct: 190 DVTHKAQIHVEDTERFR 206
>sp|C0PW90|RIHA_SALPC Pyrimidine-specific ribonucleoside hydrolase RihA OS=Salmonella
paratyphi C (strain RKS4594) GN=rihA PE=3 SV=1
Length = 311
Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 59/128 (46%), Gaps = 33/128 (25%)
Query: 67 AFLPQGGRKYAPLRQPTAQQVLINAI--SAGPITVFVMGSHTNFAIFLMNNPHLKKNIEH 124
+F PQ G TA +++ + SA P+T+ G TN A+ L ++P L I
Sbjct: 96 SFAPQSG---------TAVELMAKTLRESAQPVTIVSTGPQTNVALLLNSHPELHTKIAR 146
Query: 125 IYVMGGAIRSDCFNSTNSSQSEQCDSIGNLYPDDSNPYAEFNIFSDPFAAYTVLHSGIPV 184
I +MGGA+ +GN P AEFNI+ DP AA V SGIPV
Sbjct: 147 IVIMGGAM-----------------GLGNW-----TPAAEFNIYVDPEAAEIVFQSGIPV 184
Query: 185 TIIPLDAT 192
+ LD T
Sbjct: 185 VMAGLDVT 192
Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 67/271 (24%), Positives = 112/271 (41%), Gaps = 53/271 (19%)
Query: 405 MGKPVVFDIDMSAGDFLALIYLLKLPVELINLKGILVSSTGWATSATVDVVYDLLHMMGR 464
M P++ D D D +AL+ L P + +K I S+ T+ V +L ++ R
Sbjct: 1 MALPIIIDCDPGHDDAIALVLALASPE--LEVKAITSSAGNQTPEKTLRNVLRMLTLLKR 58
Query: 465 DDIPVGLGDVFAVGEVNPKFPPIGGCKYAKAIPLGSGGFLDSDTLYGLA-RDLPRSPRRY 523
DIPV A G V P + +D ++G + D P P
Sbjct: 59 PDIPV------AGGAVKPLM----------------RELIIADNVHGESGLDGPALP--- 93
Query: 524 TAENSVRFGASQDNDDPELRQPLAVDVWKSIVESIEPGSKITILTNGPLTNLAQIIGLQN 583
E S A Q EL K++ ES +P +TI++ GP TN+A ++
Sbjct: 94 --EPSF---APQSGTAVELMA-------KTLRESAQP---VTIVSTGPQTNVALLLNSHP 138
Query: 584 S-SSVIQDVYIVGGNKGQDNEKGNVFTVPSSKYAEFNMFLDPLAAKAVFESKLEIKLIPL 642
+ I + I+GG G N + AEFN+++DP AA+ VF+S + + + L
Sbjct: 139 ELHTKIARIVIMGGAMGLGN---------WTPAAEFNIYVDPEAAEIVFQSGIPVVMAGL 189
Query: 643 HMQRRVASFFKILHKLRDRKKTPESVFSQRL 673
+ + + + RD ++ ++ L
Sbjct: 190 DVTHKAQIHAADIERFRDIGNPISTIVAELL 220
>sp|Q3Z4E1|RIHA_SHISS Pyrimidine-specific ribonucleoside hydrolase RihA OS=Shigella
sonnei (strain Ss046) GN=rihA PE=3 SV=1
Length = 311
Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 65/137 (47%), Gaps = 27/137 (19%)
Query: 58 VNTNYGLRKAFLPQGGRKYAPLRQPTAQQVLINAI--SAGPITVFVMGSHTNFAIFLMNN 115
V+ GL LP+ +AP + TA +++ + SA P+T+ G TN A+ L ++
Sbjct: 81 VHGESGLDGPALPE--PTFAP-QNCTAVELMAKTLRESAEPVTIVSTGPQTNVALLLNSH 137
Query: 116 PHLKKNIEHIYVMGGAIRSDCFNSTNSSQSEQCDSIGNLYPDDSNPYAEFNIFSDPFAAY 175
P L I I +MGGA+ +GN P AEFNI+ DP AA
Sbjct: 138 PELHSKIARIVIMGGAM-----------------GLGNW-----TPAAEFNIYVDPEAAE 175
Query: 176 TVLHSGIPVTIIPLDAT 192
V SGIPV + LD T
Sbjct: 176 IVFQSGIPVVMAGLDVT 192
Score = 50.4 bits (119), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 64/257 (24%), Positives = 107/257 (41%), Gaps = 53/257 (20%)
Query: 405 MGKPVVFDIDMSAGDFLALIYLLKLPVELINLKGILVSSTGWATSATVDVVYDLLHMMGR 464
M P++ D D D +A++ L P +++K I S+ T+ V +L ++ R
Sbjct: 1 MALPILLDCDPGHDDAIAIVLALASPE--LDVKAITSSAGNQTPEKTLRNVLRMLTLLNR 58
Query: 465 DDIPVGLGDVFAVGEVNPKFPPIGGCKYAKAIPLGSGGFLDSDTLYGLA-RDLPRSPRRY 523
DIPV A G V P + + +D ++G + D P P
Sbjct: 59 TDIPV------AGGAVKPLMREL----------------IIADNVHGESGLDGPALPEPT 96
Query: 524 TAENSVRFGASQDNDDPELRQPLAVDVWKSIVESIEPGSKITILTNGPLTNLAQIIGLQN 583
A Q+ EL K++ ES EP +TI++ GP TN+A ++
Sbjct: 97 FA--------PQNCTAVELMA-------KTLRESAEP---VTIVSTGPQTNVALLLNSHP 138
Query: 584 S-SSVIQDVYIVGGNKGQDNEKGNVFTVPSSKYAEFNMFLDPLAAKAVFESKLEIKLIPL 642
S I + I+GG G N + AEFN+++DP AA+ VF+S + + + L
Sbjct: 139 ELHSKIARIVIMGGAMGLGN---------WTPAAEFNIYVDPEAAEIVFQSGIPVVMAGL 189
Query: 643 HMQRRVASFFKILHKLR 659
+ + + + R
Sbjct: 190 DVTHKAQIHVEDTERFR 206
>sp|B7N9Q7|RIHA_ECOLU Pyrimidine-specific ribonucleoside hydrolase RihA OS=Escherichia
coli O17:K52:H18 (strain UMN026 / ExPEC) GN=rihA PE=3
SV=1
Length = 311
Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 65/137 (47%), Gaps = 27/137 (19%)
Query: 58 VNTNYGLRKAFLPQGGRKYAPLRQPTAQQVLINAI--SAGPITVFVMGSHTNFAIFLMNN 115
V+ GL LP+ +AP + TA +++ + SA P+T+ G TN A+ L ++
Sbjct: 81 VHGESGLDGPALPE--PTFAP-QNCTAVELMAKTLRESAEPVTIVSTGPQTNVALLLNSH 137
Query: 116 PHLKKNIEHIYVMGGAIRSDCFNSTNSSQSEQCDSIGNLYPDDSNPYAEFNIFSDPFAAY 175
P L I I +MGGA+ +GN P AEFNI+ DP AA
Sbjct: 138 PELHSKIARIVIMGGAM-----------------GLGNW-----TPAAEFNIYVDPEAAE 175
Query: 176 TVLHSGIPVTIIPLDAT 192
V SGIPV + LD T
Sbjct: 176 IVFQSGIPVVMAGLDVT 192
Score = 50.4 bits (119), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 64/257 (24%), Positives = 107/257 (41%), Gaps = 53/257 (20%)
Query: 405 MGKPVVFDIDMSAGDFLALIYLLKLPVELINLKGILVSSTGWATSATVDVVYDLLHMMGR 464
M P++ D D D +A++ L P +++K I S+ T+ V +L ++ R
Sbjct: 1 MALPILLDCDPGHDDAIAIVLALASPE--LDVKAITSSAGNQTPEKTLRNVLRMLTLLNR 58
Query: 465 DDIPVGLGDVFAVGEVNPKFPPIGGCKYAKAIPLGSGGFLDSDTLYGLA-RDLPRSPRRY 523
DIPV A G V P + + +D ++G + D P P
Sbjct: 59 TDIPV------AGGAVKPLMREL----------------IIADNVHGESGLDGPALPEPT 96
Query: 524 TAENSVRFGASQDNDDPELRQPLAVDVWKSIVESIEPGSKITILTNGPLTNLAQIIGLQN 583
A Q+ EL K++ ES EP +TI++ GP TN+A ++
Sbjct: 97 FA--------PQNCTAVELMA-------KTLRESAEP---VTIVSTGPQTNVALLLNSHP 138
Query: 584 S-SSVIQDVYIVGGNKGQDNEKGNVFTVPSSKYAEFNMFLDPLAAKAVFESKLEIKLIPL 642
S I + I+GG G N + AEFN+++DP AA+ VF+S + + + L
Sbjct: 139 ELHSKIARIVIMGGAMGLGN---------WTPAAEFNIYVDPEAAEIVFQSGIPVVMAGL 189
Query: 643 HMQRRVASFFKILHKLR 659
+ + + + R
Sbjct: 190 DVTHKAQIHVEDTERFR 206
>sp|P41409|RIHA_ECOLI Pyrimidine-specific ribonucleoside hydrolase RihA OS=Escherichia
coli (strain K12) GN=rihA PE=1 SV=2
Length = 311
Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 65/137 (47%), Gaps = 27/137 (19%)
Query: 58 VNTNYGLRKAFLPQGGRKYAPLRQPTAQQVLINAI--SAGPITVFVMGSHTNFAIFLMNN 115
V+ GL LP+ +AP + TA +++ + SA P+T+ G TN A+ L ++
Sbjct: 81 VHGESGLDGPALPE--PTFAP-QNCTAVELMAKTLRESAEPVTIVSTGPQTNVALLLNSH 137
Query: 116 PHLKKNIEHIYVMGGAIRSDCFNSTNSSQSEQCDSIGNLYPDDSNPYAEFNIFSDPFAAY 175
P L I I +MGGA+ +GN P AEFNI+ DP AA
Sbjct: 138 PELHSKIARIVIMGGAM-----------------GLGNW-----TPAAEFNIYVDPEAAE 175
Query: 176 TVLHSGIPVTIIPLDAT 192
V SGIPV + LD T
Sbjct: 176 IVFQSGIPVVMAGLDVT 192
Score = 50.4 bits (119), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 64/257 (24%), Positives = 107/257 (41%), Gaps = 53/257 (20%)
Query: 405 MGKPVVFDIDMSAGDFLALIYLLKLPVELINLKGILVSSTGWATSATVDVVYDLLHMMGR 464
M P++ D D D +A++ L P +++K I S+ T+ V +L ++ R
Sbjct: 1 MALPILLDCDPGHDDAIAIVLALASPE--LDVKAITSSAGNQTPEKTLRNVLRMLTLLNR 58
Query: 465 DDIPVGLGDVFAVGEVNPKFPPIGGCKYAKAIPLGSGGFLDSDTLYGLA-RDLPRSPRRY 523
DIPV A G V P + + +D ++G + D P P
Sbjct: 59 TDIPV------AGGAVKPLMREL----------------IIADNVHGESGLDGPALPEPT 96
Query: 524 TAENSVRFGASQDNDDPELRQPLAVDVWKSIVESIEPGSKITILTNGPLTNLAQIIGLQN 583
A Q+ EL K++ ES EP +TI++ GP TN+A ++
Sbjct: 97 FA--------PQNCTAVELMA-------KTLRESAEP---VTIVSTGPQTNVALLLNSHP 138
Query: 584 S-SSVIQDVYIVGGNKGQDNEKGNVFTVPSSKYAEFNMFLDPLAAKAVFESKLEIKLIPL 642
S I + I+GG G N + AEFN+++DP AA+ VF+S + + + L
Sbjct: 139 ELHSKIARIVIMGGAMGLGN---------WTPAAEFNIYVDPEAAEIVFQSGIPVVMAGL 189
Query: 643 HMQRRVASFFKILHKLR 659
+ + + + R
Sbjct: 190 DVTHKAQIHVEDTERFR 206
>sp|C4ZWD8|RIHA_ECOBW Pyrimidine-specific ribonucleoside hydrolase RihA OS=Escherichia
coli (strain K12 / MC4100 / BW2952) GN=rihA PE=3 SV=1
Length = 311
Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 65/137 (47%), Gaps = 27/137 (19%)
Query: 58 VNTNYGLRKAFLPQGGRKYAPLRQPTAQQVLINAI--SAGPITVFVMGSHTNFAIFLMNN 115
V+ GL LP+ +AP + TA +++ + SA P+T+ G TN A+ L ++
Sbjct: 81 VHGESGLDGPALPE--PTFAP-QNCTAVELMAKTLRESAEPVTIVSTGPQTNVALLLNSH 137
Query: 116 PHLKKNIEHIYVMGGAIRSDCFNSTNSSQSEQCDSIGNLYPDDSNPYAEFNIFSDPFAAY 175
P L I I +MGGA+ +GN P AEFNI+ DP AA
Sbjct: 138 PELHSKIARIVIMGGAM-----------------GLGNW-----TPAAEFNIYVDPEAAE 175
Query: 176 TVLHSGIPVTIIPLDAT 192
V SGIPV + LD T
Sbjct: 176 IVFQSGIPVVMAGLDVT 192
Score = 50.4 bits (119), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 64/257 (24%), Positives = 107/257 (41%), Gaps = 53/257 (20%)
Query: 405 MGKPVVFDIDMSAGDFLALIYLLKLPVELINLKGILVSSTGWATSATVDVVYDLLHMMGR 464
M P++ D D D +A++ L P +++K I S+ T+ V +L ++ R
Sbjct: 1 MALPILLDCDPGHDDAIAIVLALASPE--LDVKAITSSAGNQTPEKTLRNVLRMLTLLNR 58
Query: 465 DDIPVGLGDVFAVGEVNPKFPPIGGCKYAKAIPLGSGGFLDSDTLYGLA-RDLPRSPRRY 523
DIPV A G V P + + +D ++G + D P P
Sbjct: 59 TDIPV------AGGAVKPLMREL----------------IIADNVHGESGLDGPALPEPT 96
Query: 524 TAENSVRFGASQDNDDPELRQPLAVDVWKSIVESIEPGSKITILTNGPLTNLAQIIGLQN 583
A Q+ EL K++ ES EP +TI++ GP TN+A ++
Sbjct: 97 FA--------PQNCTAVELMA-------KTLRESAEP---VTIVSTGPQTNVALLLNSHP 138
Query: 584 S-SSVIQDVYIVGGNKGQDNEKGNVFTVPSSKYAEFNMFLDPLAAKAVFESKLEIKLIPL 642
S I + I+GG G N + AEFN+++DP AA+ VF+S + + + L
Sbjct: 139 ELHSKIARIVIMGGAMGLGN---------WTPAAEFNIYVDPEAAEIVFQSGIPVVMAGL 189
Query: 643 HMQRRVASFFKILHKLR 659
+ + + + R
Sbjct: 190 DVTHKAQIHVEDTERFR 206
>sp|B7M5H8|RIHA_ECO8A Pyrimidine-specific ribonucleoside hydrolase RihA OS=Escherichia
coli O8 (strain IAI1) GN=rihA PE=3 SV=1
Length = 311
Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 65/137 (47%), Gaps = 27/137 (19%)
Query: 58 VNTNYGLRKAFLPQGGRKYAPLRQPTAQQVLINAI--SAGPITVFVMGSHTNFAIFLMNN 115
V+ GL LP+ +AP + TA +++ + SA P+T+ G TN A+ L ++
Sbjct: 81 VHGESGLDGPALPE--PTFAP-QNCTAVELMAKTLRESAEPVTIVSTGPQTNVALLLNSH 137
Query: 116 PHLKKNIEHIYVMGGAIRSDCFNSTNSSQSEQCDSIGNLYPDDSNPYAEFNIFSDPFAAY 175
P L I I +MGGA+ +GN P AEFNI+ DP AA
Sbjct: 138 PELHSKIARIVIMGGAM-----------------GLGNW-----TPAAEFNIYVDPEAAE 175
Query: 176 TVLHSGIPVTIIPLDAT 192
V SGIPV + LD T
Sbjct: 176 IVFQSGIPVVMAGLDVT 192
Score = 50.4 bits (119), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 64/257 (24%), Positives = 107/257 (41%), Gaps = 53/257 (20%)
Query: 405 MGKPVVFDIDMSAGDFLALIYLLKLPVELINLKGILVSSTGWATSATVDVVYDLLHMMGR 464
M P++ D D D +A++ L P +++K I S+ T+ V +L ++ R
Sbjct: 1 MALPILLDCDPGHDDAIAIVLALASPE--LDVKAITSSAGNQTPEKTLRNVLRMLTLLNR 58
Query: 465 DDIPVGLGDVFAVGEVNPKFPPIGGCKYAKAIPLGSGGFLDSDTLYGLA-RDLPRSPRRY 523
DIPV A G V P + + +D ++G + D P P
Sbjct: 59 TDIPV------AGGAVKPLMREL----------------IIADNVHGESGLDGPALPEPT 96
Query: 524 TAENSVRFGASQDNDDPELRQPLAVDVWKSIVESIEPGSKITILTNGPLTNLAQIIGLQN 583
A Q+ EL K++ ES EP +TI++ GP TN+A ++
Sbjct: 97 FA--------PQNCTAVELMA-------KTLRESAEP---VTIVSTGPQTNVALLLNSHP 138
Query: 584 S-SSVIQDVYIVGGNKGQDNEKGNVFTVPSSKYAEFNMFLDPLAAKAVFESKLEIKLIPL 642
S I + I+GG G N + AEFN+++DP AA+ VF+S + + + L
Sbjct: 139 ELHSKIARIVIMGGAMGLGN---------WTPAAEFNIYVDPEAAEIVFQSGIPVVMAGL 189
Query: 643 HMQRRVASFFKILHKLR 659
+ + + + R
Sbjct: 190 DVTHKAQIHVEDTERFR 206
>sp|Q57RR6|RIHA_SALCH Pyrimidine-specific ribonucleoside hydrolase RihA OS=Salmonella
choleraesuis (strain SC-B67) GN=rihA PE=3 SV=1
Length = 311
Score = 61.6 bits (148), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 59/128 (46%), Gaps = 33/128 (25%)
Query: 67 AFLPQGGRKYAPLRQPTAQQVLINAI--SAGPITVFVMGSHTNFAIFLMNNPHLKKNIEH 124
+F PQ G TA +++ + SA P+T+ G TN A+ L ++P L I
Sbjct: 96 SFAPQSG---------TAVELMAKTLRESAQPVTIVSTGPQTNVALLLNSHPELHTKIAR 146
Query: 125 IYVMGGAIRSDCFNSTNSSQSEQCDSIGNLYPDDSNPYAEFNIFSDPFAAYTVLHSGIPV 184
I +MGGA+ +GN P AEFNI+ DP AA V SGIPV
Sbjct: 147 IVIMGGAM-----------------GLGNW-----TPAAEFNIYVDPEAAEIVFQSGIPV 184
Query: 185 TIIPLDAT 192
+ LD T
Sbjct: 185 VMAGLDVT 192
Score = 51.2 bits (121), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 67/271 (24%), Positives = 112/271 (41%), Gaps = 53/271 (19%)
Query: 405 MGKPVVFDIDMSAGDFLALIYLLKLPVELINLKGILVSSTGWATSATVDVVYDLLHMMGR 464
M P++ D D D +AL+ L P + +K I S+ T+ V +L ++ R
Sbjct: 1 MALPIIIDCDPGHDDAIALVLALASPE--LEVKAITSSAGNQTPEKTLRNVLRMLTLLKR 58
Query: 465 DDIPVGLGDVFAVGEVNPKFPPIGGCKYAKAIPLGSGGFLDSDTLYGLA-RDLPRSPRRY 523
DIPV A G V P + +D ++G + D P P
Sbjct: 59 PDIPV------AGGAVKPLM----------------RELIIADNVHGESGLDGPALP--- 93
Query: 524 TAENSVRFGASQDNDDPELRQPLAVDVWKSIVESIEPGSKITILTNGPLTNLAQIIGLQN 583
E S A Q EL K++ ES +P +TI++ GP TN+A ++
Sbjct: 94 --EPSF---APQSGTAVELMA-------KTLRESAQP---VTIVSTGPQTNVALLLNSHP 138
Query: 584 S-SSVIQDVYIVGGNKGQDNEKGNVFTVPSSKYAEFNMFLDPLAAKAVFESKLEIKLIPL 642
+ I + I+GG G N + AEFN+++DP AA+ VF+S + + + L
Sbjct: 139 ELHTKIARIVIMGGAMGLGN---------WTPAAEFNIYVDPEAAEIVFQSGIPVVMAGL 189
Query: 643 HMQRRVASFFKILHKLRDRKKTPESVFSQRL 673
+ + + + RD ++ ++ L
Sbjct: 190 DVTHKAQIHAADIERFRDIGNPISTIVAELL 220
>sp|B7NM03|RIHA_ECO7I Pyrimidine-specific ribonucleoside hydrolase RihA OS=Escherichia
coli O7:K1 (strain IAI39 / ExPEC) GN=rihA PE=3 SV=1
Length = 311
Score = 61.6 bits (148), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 65/137 (47%), Gaps = 27/137 (19%)
Query: 58 VNTNYGLRKAFLPQGGRKYAPLRQPTAQQVLINAI--SAGPITVFVMGSHTNFAIFLMNN 115
V+ GL LP+ +AP + TA +++ + SA P+T+ G TN A+ L ++
Sbjct: 81 VHGESGLDGPALPE--PTFAP-QNCTAVELMAKTLRESAEPVTIVSTGPQTNVALLLNSH 137
Query: 116 PHLKKNIEHIYVMGGAIRSDCFNSTNSSQSEQCDSIGNLYPDDSNPYAEFNIFSDPFAAY 175
P L I I +MGGA+ +GN P AEFNI+ DP AA
Sbjct: 138 PELHSKIARIVIMGGAM-----------------GLGNW-----TPAAEFNIYVDPEAAE 175
Query: 176 TVLHSGIPVTIIPLDAT 192
V SGIPV + LD T
Sbjct: 176 IVFQSGIPVVMAGLDVT 192
Score = 52.4 bits (124), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 67/264 (25%), Positives = 107/264 (40%), Gaps = 67/264 (25%)
Query: 405 MGKPVVFDIDMSAGDFLALIYLLKLPVELINLKGILVSSTGWATSATVDVVYDLLHMMGR 464
M P++ D D D +A++ L P +++K I S+ T+ V +L ++ R
Sbjct: 1 MALPILLDCDPGHDDAIAIVLALASPE--LDVKAITSSAGNQTPEKTLRNVLRMLTLLNR 58
Query: 465 DDIPVGLGDVFAVGEVNPKFPPIGGCKYAKAIPLGSGGFLDSDTLYGLARDLPRSPRRYT 524
DIPV A G V P L RDL
Sbjct: 59 TDIPV------ASGAVKP-----------------------------LMRDL------II 77
Query: 525 AENSVRFGASQDNDDPELRQPL-------AVDVW-KSIVESIEPGSKITILTNGPLTNLA 576
A+N D P L +P AV++ K++ ES EP +TI++ GP TN+A
Sbjct: 78 ADN---VHGESGLDGPALPEPTFAPQNCTAVELMAKTLRESAEP---VTIVSTGPQTNVA 131
Query: 577 QIIGLQNS-SSVIQDVYIVGGNKGQDNEKGNVFTVPSSKYAEFNMFLDPLAAKAVFESKL 635
++ S I + I+GG G N + AEFN+++DP AA+ VF+S +
Sbjct: 132 LLLNSHPELHSKIARIVIMGGAMGLGN---------WTPAAEFNIYVDPEAAEIVFQSGI 182
Query: 636 EIKLIPLHMQRRVASFFKILHKLR 659
+ + L + + + + R
Sbjct: 183 PVVMAGLDVTHKAQIHVEDTERFR 206
>sp|Q83LY1|RIHA_SHIFL Pyrimidine-specific ribonucleoside hydrolase RihA OS=Shigella
flexneri GN=rihA PE=3 SV=4
Length = 311
Score = 61.6 bits (148), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 65/137 (47%), Gaps = 27/137 (19%)
Query: 58 VNTNYGLRKAFLPQGGRKYAPLRQPTAQQVLINAI--SAGPITVFVMGSHTNFAIFLMNN 115
V+ GL LP+ +AP + TA +++ + SA P+T+ G TN A+ L ++
Sbjct: 81 VHGESGLDGPALPE--PTFAP-QNCTAVELMAKTLRESAEPVTIVSTGPQTNVALLLNSH 137
Query: 116 PHLKKNIEHIYVMGGAIRSDCFNSTNSSQSEQCDSIGNLYPDDSNPYAEFNIFSDPFAAY 175
P L I I +MGGA+ +GN P AEFNI+ DP AA
Sbjct: 138 PELHSKIARIVIMGGAM-----------------GLGNW-----TPAAEFNIYVDPEAAE 175
Query: 176 TVLHSGIPVTIIPLDAT 192
V SGIPV + LD T
Sbjct: 176 IVFQSGIPVVMAGLDVT 192
Score = 50.4 bits (119), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 64/257 (24%), Positives = 106/257 (41%), Gaps = 53/257 (20%)
Query: 405 MGKPVVFDIDMSAGDFLALIYLLKLPVELINLKGILVSSTGWATSATVDVVYDLLHMMGR 464
M P++ D D D +A++ L P +++K I S+ T+ V +L ++ R
Sbjct: 1 MALPILLDCDPGHDDAIAIVLALASPE--LDVKAITSSAGNQTPEKTLRNVLRMLTLLNR 58
Query: 465 DDIPVGLGDVFAVGEVNPKFPPIGGCKYAKAIPLGSGGFLDSDTLYGLA-RDLPRSPRRY 523
DIPV A G V P + +D ++G + D P P
Sbjct: 59 TDIPV------AGGAVKPLM----------------RELIIADNVHGESGLDGPALPEPT 96
Query: 524 TAENSVRFGASQDNDDPELRQPLAVDVWKSIVESIEPGSKITILTNGPLTNLAQIIGLQN 583
A Q+ EL K++ ES EP +TI++ GP TN+A ++
Sbjct: 97 FA--------PQNCTAVELMA-------KTLRESAEP---VTIVSTGPQTNVALLLNSHP 138
Query: 584 S-SSVIQDVYIVGGNKGQDNEKGNVFTVPSSKYAEFNMFLDPLAAKAVFESKLEIKLIPL 642
S I + I+GG G N + AEFN+++DP AA+ VF+S + + + L
Sbjct: 139 ELHSKIARIVIMGGAMGLGN---------WTPAAEFNIYVDPEAAEIVFQSGIPVVMAGL 189
Query: 643 HMQRRVASFFKILHKLR 659
+ + + + R
Sbjct: 190 DVTHKAQIHVEDTERFR 206
>sp|Q0T6R1|RIHA_SHIF8 Pyrimidine-specific ribonucleoside hydrolase RihA OS=Shigella
flexneri serotype 5b (strain 8401) GN=rihA PE=3 SV=1
Length = 311
Score = 61.6 bits (148), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 65/137 (47%), Gaps = 27/137 (19%)
Query: 58 VNTNYGLRKAFLPQGGRKYAPLRQPTAQQVLINAI--SAGPITVFVMGSHTNFAIFLMNN 115
V+ GL LP+ +AP + TA +++ + SA P+T+ G TN A+ L ++
Sbjct: 81 VHGESGLDGPALPE--PTFAP-QNCTAVELMAKTLRESAEPVTIVSTGPQTNVALLLNSH 137
Query: 116 PHLKKNIEHIYVMGGAIRSDCFNSTNSSQSEQCDSIGNLYPDDSNPYAEFNIFSDPFAAY 175
P L I I +MGGA+ +GN P AEFNI+ DP AA
Sbjct: 138 PELHSKIARIVIMGGAM-----------------GLGNW-----TPAAEFNIYVDPEAAE 175
Query: 176 TVLHSGIPVTIIPLDAT 192
V SGIPV + LD T
Sbjct: 176 IVFQSGIPVVMAGLDVT 192
Score = 50.4 bits (119), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 64/257 (24%), Positives = 106/257 (41%), Gaps = 53/257 (20%)
Query: 405 MGKPVVFDIDMSAGDFLALIYLLKLPVELINLKGILVSSTGWATSATVDVVYDLLHMMGR 464
M P++ D D D +A++ L P +++K I S+ T+ V +L ++ R
Sbjct: 1 MALPILLDCDPGHDDAIAIVLALASPE--LDVKAITSSAGNQTPEKTLRNVLRMLTLLNR 58
Query: 465 DDIPVGLGDVFAVGEVNPKFPPIGGCKYAKAIPLGSGGFLDSDTLYGLA-RDLPRSPRRY 523
DIPV A G V P + +D ++G + D P P
Sbjct: 59 TDIPV------AGGAVKPLM----------------RELIIADNVHGESGLDGPALPEPT 96
Query: 524 TAENSVRFGASQDNDDPELRQPLAVDVWKSIVESIEPGSKITILTNGPLTNLAQIIGLQN 583
A Q+ EL K++ ES EP +TI++ GP TN+A ++
Sbjct: 97 FA--------PQNCTAVELMA-------KTLRESAEP---VTIVSTGPQTNVALLLNSHP 138
Query: 584 S-SSVIQDVYIVGGNKGQDNEKGNVFTVPSSKYAEFNMFLDPLAAKAVFESKLEIKLIPL 642
S I + I+GG G N + AEFN+++DP AA+ VF+S + + + L
Sbjct: 139 ELHSKIARIVIMGGAMGLGN---------WTPAAEFNIYVDPEAAEIVFQSGIPVVMAGL 189
Query: 643 HMQRRVASFFKILHKLR 659
+ + + + R
Sbjct: 190 DVTHKAQIHVEDTERFR 206
>sp|Q324P5|RIHA_SHIBS Pyrimidine-specific ribonucleoside hydrolase RihA OS=Shigella
boydii serotype 4 (strain Sb227) GN=rihA PE=3 SV=1
Length = 311
Score = 61.6 bits (148), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 65/137 (47%), Gaps = 27/137 (19%)
Query: 58 VNTNYGLRKAFLPQGGRKYAPLRQPTAQQVLINAI--SAGPITVFVMGSHTNFAIFLMNN 115
V+ GL LP+ +AP + TA +++ + SA P+T+ G TN A+ L ++
Sbjct: 81 VHGESGLDGPALPE--PTFAP-QNCTAVELMAKTLRESAEPVTIVSTGPQTNVALLLNSH 137
Query: 116 PHLKKNIEHIYVMGGAIRSDCFNSTNSSQSEQCDSIGNLYPDDSNPYAEFNIFSDPFAAY 175
P L I I +MGGA+ +GN P AEFNI+ DP AA
Sbjct: 138 PELHSKIARIVIMGGAM-----------------GLGNW-----TPAAEFNIYVDPEAAE 175
Query: 176 TVLHSGIPVTIIPLDAT 192
V SGIPV + LD T
Sbjct: 176 IVFQSGIPVVMAGLDVT 192
Score = 50.4 bits (119), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 64/257 (24%), Positives = 106/257 (41%), Gaps = 53/257 (20%)
Query: 405 MGKPVVFDIDMSAGDFLALIYLLKLPVELINLKGILVSSTGWATSATVDVVYDLLHMMGR 464
M P++ D D D +A++ L P +++K I S+ T+ V +L ++ R
Sbjct: 1 MALPILLDCDPGHDDAIAIVLALASPE--LDVKAITSSAGNQTPEKTLRNVLRMLTLLNR 58
Query: 465 DDIPVGLGDVFAVGEVNPKFPPIGGCKYAKAIPLGSGGFLDSDTLYGLA-RDLPRSPRRY 523
DIPV A G V P + +D ++G + D P P
Sbjct: 59 TDIPV------AGGAVKPLM----------------RELIIADNVHGESGLDGPALPEPT 96
Query: 524 TAENSVRFGASQDNDDPELRQPLAVDVWKSIVESIEPGSKITILTNGPLTNLAQIIGLQN 583
A Q+ EL K++ ES EP +TI++ GP TN+A ++
Sbjct: 97 FA--------PQNCTAVELMA-------KTLRESAEP---VTIVSTGPQTNVALLLNSHP 138
Query: 584 S-SSVIQDVYIVGGNKGQDNEKGNVFTVPSSKYAEFNMFLDPLAAKAVFESKLEIKLIPL 642
S I + I+GG G N + AEFN+++DP AA+ VF+S + + + L
Sbjct: 139 ELHSKIARIVIMGGAMGLGN---------WTPAAEFNIYVDPEAAEIVFQSGIPVVMAGL 189
Query: 643 HMQRRVASFFKILHKLR 659
+ + + + R
Sbjct: 190 DVTHKAQIHIEDTERFR 206
>sp|B2TU69|RIHA_SHIB3 Pyrimidine-specific ribonucleoside hydrolase RihA OS=Shigella
boydii serotype 18 (strain CDC 3083-94 / BS512) GN=rihA
PE=3 SV=1
Length = 311
Score = 61.6 bits (148), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 65/137 (47%), Gaps = 27/137 (19%)
Query: 58 VNTNYGLRKAFLPQGGRKYAPLRQPTAQQVLINAI--SAGPITVFVMGSHTNFAIFLMNN 115
V+ GL LP+ +AP + TA +++ + SA P+T+ G TN A+ L ++
Sbjct: 81 VHGESGLDGPALPE--PTFAP-QNCTAVELMAKTLRESAEPVTIVSTGPQTNVALLLNSH 137
Query: 116 PHLKKNIEHIYVMGGAIRSDCFNSTNSSQSEQCDSIGNLYPDDSNPYAEFNIFSDPFAAY 175
P L I I +MGGA+ +GN P AEFNI+ DP AA
Sbjct: 138 PELHSKIARIVIMGGAM-----------------GLGNW-----TPAAEFNIYVDPEAAE 175
Query: 176 TVLHSGIPVTIIPLDAT 192
V SGIPV + LD T
Sbjct: 176 IVFQSGIPVVMAGLDVT 192
Score = 50.4 bits (119), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 64/257 (24%), Positives = 107/257 (41%), Gaps = 53/257 (20%)
Query: 405 MGKPVVFDIDMSAGDFLALIYLLKLPVELINLKGILVSSTGWATSATVDVVYDLLHMMGR 464
M P++ D D D +A++ L P +++K I S+ T+ V +L ++ R
Sbjct: 1 MALPILLDCDPGHDDAIAIVLALASPE--LDVKAITSSAGNQTPEKTLRNVLRMLTLLNR 58
Query: 465 DDIPVGLGDVFAVGEVNPKFPPIGGCKYAKAIPLGSGGFLDSDTLYGLA-RDLPRSPRRY 523
DIPV A G V P + + +D ++G + D P P
Sbjct: 59 TDIPV------AGGAVKPLMREL----------------IIADNVHGESGLDGPALPEPT 96
Query: 524 TAENSVRFGASQDNDDPELRQPLAVDVWKSIVESIEPGSKITILTNGPLTNLAQIIGLQN 583
A Q+ EL K++ ES EP +TI++ GP TN+A ++
Sbjct: 97 FA--------PQNCTAVELMA-------KTLRESAEP---VTIVSTGPQTNVALLLNSHP 138
Query: 584 S-SSVIQDVYIVGGNKGQDNEKGNVFTVPSSKYAEFNMFLDPLAAKAVFESKLEIKLIPL 642
S I + I+GG G N + AEFN+++DP AA+ VF+S + + + L
Sbjct: 139 ELHSKIARIVIMGGAMGLGN---------WTPAAEFNIYVDPEAAEIVFQSGIPVVMAGL 189
Query: 643 HMQRRVASFFKILHKLR 659
+ + + + R
Sbjct: 190 DVTHKAQIHIEDTERFR 206
>sp|B5YQK2|RIHA_ECO5E Pyrimidine-specific ribonucleoside hydrolase RihA OS=Escherichia
coli O157:H7 (strain EC4115 / EHEC) GN=rihA PE=3 SV=1
Length = 311
Score = 61.6 bits (148), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 65/137 (47%), Gaps = 27/137 (19%)
Query: 58 VNTNYGLRKAFLPQGGRKYAPLRQPTAQQVLINAI--SAGPITVFVMGSHTNFAIFLMNN 115
V+ GL LP+ +AP + TA +++ + SA P+T+ G TN A+ L ++
Sbjct: 81 VHGESGLDGPALPE--PTFAP-QNCTAVELMAKTLRESAEPVTIVSTGPQTNVALLLNSH 137
Query: 116 PHLKKNIEHIYVMGGAIRSDCFNSTNSSQSEQCDSIGNLYPDDSNPYAEFNIFSDPFAAY 175
P L I I +MGGA+ +GN P AEFNI+ DP AA
Sbjct: 138 PELHSKIARIVIMGGAM-----------------GLGNW-----TPAAEFNIYVDPEAAE 175
Query: 176 TVLHSGIPVTIIPLDAT 192
V SGIPV + LD T
Sbjct: 176 IVFQSGIPVVMAGLDVT 192
Score = 50.4 bits (119), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 64/257 (24%), Positives = 107/257 (41%), Gaps = 53/257 (20%)
Query: 405 MGKPVVFDIDMSAGDFLALIYLLKLPVELINLKGILVSSTGWATSATVDVVYDLLHMMGR 464
M P++ D D D +A++ L P +++K I S+ T+ V +L ++ R
Sbjct: 1 MALPILLDCDPGHDDAIAIVLALASPE--LDVKAITSSAGNQTPEKTLRNVLRMLTLLNR 58
Query: 465 DDIPVGLGDVFAVGEVNPKFPPIGGCKYAKAIPLGSGGFLDSDTLYGLA-RDLPRSPRRY 523
DIPV A G V P + + +D ++G + D P P
Sbjct: 59 TDIPV------AGGAVKPLMREL----------------IIADNVHGESGLDGPALPEPT 96
Query: 524 TAENSVRFGASQDNDDPELRQPLAVDVWKSIVESIEPGSKITILTNGPLTNLAQIIGLQN 583
A Q+ EL K++ ES EP +TI++ GP TN+A ++
Sbjct: 97 FA--------PQNCTAVELMA-------KTLRESAEP---VTIVSTGPQTNVALLLNSHP 138
Query: 584 S-SSVIQDVYIVGGNKGQDNEKGNVFTVPSSKYAEFNMFLDPLAAKAVFESKLEIKLIPL 642
S I + I+GG G N + AEFN+++DP AA+ VF+S + + + L
Sbjct: 139 ELHSKIARIVIMGGAMGLGN---------WTPAAEFNIYVDPEAAEIVFQSGIPVVMAGL 189
Query: 643 HMQRRVASFFKILHKLR 659
+ + + + R
Sbjct: 190 DVTHKAQIHVEDTERFR 206
>sp|Q8XBL8|RIHA_ECO57 Pyrimidine-specific ribonucleoside hydrolase RihA OS=Escherichia
coli O157:H7 GN=rihA PE=3 SV=1
Length = 311
Score = 61.6 bits (148), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 65/137 (47%), Gaps = 27/137 (19%)
Query: 58 VNTNYGLRKAFLPQGGRKYAPLRQPTAQQVLINAI--SAGPITVFVMGSHTNFAIFLMNN 115
V+ GL LP+ +AP + TA +++ + SA P+T+ G TN A+ L ++
Sbjct: 81 VHGESGLDGPALPE--PTFAP-QNCTAVELMAKTLRESAEPVTIVSTGPQTNVALLLNSH 137
Query: 116 PHLKKNIEHIYVMGGAIRSDCFNSTNSSQSEQCDSIGNLYPDDSNPYAEFNIFSDPFAAY 175
P L I I +MGGA+ +GN P AEFNI+ DP AA
Sbjct: 138 PELHSKIARIVIMGGAM-----------------GLGNW-----TPAAEFNIYVDPEAAE 175
Query: 176 TVLHSGIPVTIIPLDAT 192
V SGIPV + LD T
Sbjct: 176 IVFQSGIPVVMAGLDVT 192
Score = 50.4 bits (119), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 64/257 (24%), Positives = 107/257 (41%), Gaps = 53/257 (20%)
Query: 405 MGKPVVFDIDMSAGDFLALIYLLKLPVELINLKGILVSSTGWATSATVDVVYDLLHMMGR 464
M P++ D D D +A++ L P +++K I S+ T+ V +L ++ R
Sbjct: 1 MALPILLDCDPGHDDAIAIVLALASPE--LDVKAITSSAGNQTPEKTLRNVLRMLTLLNR 58
Query: 465 DDIPVGLGDVFAVGEVNPKFPPIGGCKYAKAIPLGSGGFLDSDTLYGLA-RDLPRSPRRY 523
DIPV A G V P + + +D ++G + D P P
Sbjct: 59 TDIPV------AGGAVKPLMREL----------------IIADNVHGESGLDGPALPEPT 96
Query: 524 TAENSVRFGASQDNDDPELRQPLAVDVWKSIVESIEPGSKITILTNGPLTNLAQIIGLQN 583
A Q+ EL K++ ES EP +TI++ GP TN+A ++
Sbjct: 97 FA--------PQNCTAVELMA-------KTLRESAEP---VTIVSTGPQTNVALLLNSHP 138
Query: 584 S-SSVIQDVYIVGGNKGQDNEKGNVFTVPSSKYAEFNMFLDPLAAKAVFESKLEIKLIPL 642
S I + I+GG G N + AEFN+++DP AA+ VF+S + + + L
Sbjct: 139 ELHSKIARIVIMGGAMGLGN---------WTPAAEFNIYVDPEAAEIVFQSGIPVVMAGL 189
Query: 643 HMQRRVASFFKILHKLR 659
+ + + + R
Sbjct: 190 DVTHKAQIHVEDTERFR 206
>sp|A8AJF8|RIHA_CITK8 Pyrimidine-specific ribonucleoside hydrolase RihA OS=Citrobacter
koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696)
GN=rihA PE=3 SV=1
Length = 312
Score = 61.6 bits (148), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 65/137 (47%), Gaps = 27/137 (19%)
Query: 58 VNTNYGLRKAFLPQGGRKYAPLRQPTAQQVLINAI--SAGPITVFVMGSHTNFAIFLMNN 115
V+ GL LP+ +AP + TA +++ + S P+T+ G TN A+ L ++
Sbjct: 81 VHGESGLDGPALPE--PSFAP-QTCTAVELMAKTLRESPEPVTIVATGPQTNVALLLNSH 137
Query: 116 PHLKKNIEHIYVMGGAIRSDCFNSTNSSQSEQCDSIGNLYPDDSNPYAEFNIFSDPFAAY 175
P L + I I +MGGA+ +GN P AEFNI+ DP AA
Sbjct: 138 PELHRKIARIVIMGGAM-----------------GLGNW-----TPAAEFNIYVDPEAAE 175
Query: 176 TVLHSGIPVTIIPLDAT 192
V SGIPV + LD T
Sbjct: 176 IVFQSGIPVVMAGLDVT 192
Score = 54.3 bits (129), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 67/252 (26%), Positives = 105/252 (41%), Gaps = 67/252 (26%)
Query: 405 MGKPVVFDIDMSAGDFLALIYLLKLPVELINLKGILVSSTGWATSATVDVVYDLLHMMGR 464
M PV+FD D D +A++ L P +++K I S+ T+ V +L ++GR
Sbjct: 1 MALPVLFDCDPGHDDAIAIVLALASPE--LDVKAITSSAGNQTPDKTLRNVLRMLTLLGR 58
Query: 465 DDIPVGLGDVFAVGEVNPKFPPIGGCKYAKAIPLGSGGFLDSDTLYGLARDLPRSPRRYT 524
+DIPV A G + P L RDL
Sbjct: 59 NDIPV------AGGAIKP-----------------------------LMRDL------II 77
Query: 525 AENSVRFGASQDNDDPELRQP-------LAVDVW-KSIVESIEPGSKITILTNGPLTNLA 576
A+N D P L +P AV++ K++ ES EP +TI+ GP TN+A
Sbjct: 78 ADN---VHGESGLDGPALPEPSFAPQTCTAVELMAKTLRESPEP---VTIVATGPQTNVA 131
Query: 577 QIIGLQNS-SSVIQDVYIVGGNKGQDNEKGNVFTVPSSKYAEFNMFLDPLAAKAVFESKL 635
++ I + I+GG G N + AEFN+++DP AA+ VF+S +
Sbjct: 132 LLLNSHPELHRKIARIVIMGGAMGLGN---------WTPAAEFNIYVDPEAAEIVFQSGI 182
Query: 636 EIKLIPLHMQRR 647
+ + L + +
Sbjct: 183 PVVMAGLDVTHK 194
>sp|B5XWV7|RIHA_KLEP3 Pyrimidine-specific ribonucleoside hydrolase RihA OS=Klebsiella
pneumoniae (strain 342) GN=rihA PE=3 SV=1
Length = 311
Score = 61.2 bits (147), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 64/137 (46%), Gaps = 27/137 (19%)
Query: 58 VNTNYGLRKAFLPQGGRKYAPLRQPTAQQVLINAI--SAGPITVFVMGSHTNFAIFLMNN 115
V+ GL LP+ +AP + TA +++ + S P+T+ G TN A+ L ++
Sbjct: 81 VHGESGLDGPSLPE--PTFAP-QNCTAVELMARVLRESQEPVTLVATGPQTNVALLLASH 137
Query: 116 PHLKKNIEHIYVMGGAIRSDCFNSTNSSQSEQCDSIGNLYPDDSNPYAEFNIFSDPFAAY 175
P L I I +MGGA+ +GN P AEFNIF DP AA
Sbjct: 138 PELHAKIARIVIMGGAM-----------------GLGNW-----QPAAEFNIFVDPQAAE 175
Query: 176 TVLHSGIPVTIIPLDAT 192
V SGIPV + LD T
Sbjct: 176 MVFQSGIPVVMAGLDVT 192
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 68/287 (23%), Positives = 110/287 (38%), Gaps = 68/287 (23%)
Query: 405 MGKPVVFDIDMSAGDFLALIYLLKLPVELINLKGILVSSTGWATSATVDVVYDLLHMMGR 464
M P++ D D D +A++ L P + +K + S+ T+ V +L ++ R
Sbjct: 1 MALPMMIDCDPGHDDAIAMVLALASPE--LEVKAVTASAGNQTPEKTLRNVLRMLTLLNR 58
Query: 465 DDIPVGLGDVFAVGEVNPKFPPIGGCKYAKAIPLGSGGFLDSDTLYGLARDLPRSPRRYT 524
DIPV A G P L RDL
Sbjct: 59 PDIPV------AGGAWKP-----------------------------LMRDL------II 77
Query: 525 AENSVRFGASQDNDDPELRQPL-------AVDVWKSIV-ESIEPGSKITILTNGPLTNLA 576
A+N D P L +P AV++ ++ ES EP +T++ GP TN+A
Sbjct: 78 ADN---VHGESGLDGPSLPEPTFAPQNCTAVELMARVLRESQEP---VTLVATGPQTNVA 131
Query: 577 QIIGLQNS-SSVIQDVYIVGGNKGQDNEKGNVFTVPSSKYAEFNMFLDPLAAKAVFESKL 635
++ + I + I+GG G N + AEFN+F+DP AA+ VF+S +
Sbjct: 132 LLLASHPELHAKIARIVIMGGAMGLGNWQ---------PAAEFNIFVDPQAAEMVFQSGI 182
Query: 636 EIKLIPLHMQRRVASFFKILHKLRDRKKTPESVFSQRLLQGLMTLQQ 682
+ + L + + + + R + P S LL M +
Sbjct: 183 PVVMAGLDVTHKAQILPADIERFR-QIGNPVSTIVAELLDFFMAYHK 228
>sp|B7UKT4|RIHA_ECO27 Pyrimidine-specific ribonucleoside hydrolase RihA OS=Escherichia
coli O127:H6 (strain E2348/69 / EPEC) GN=rihA PE=3 SV=1
Length = 311
Score = 61.2 bits (147), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 78/194 (40%), Gaps = 58/194 (29%)
Query: 1 MMNRDDIPVGVGGEGGILPNGTILPDVGGYQPIIDQGMSTAGECRYRQAIPVGQRLYVNT 60
++NR DIPV G ++ N I +V G
Sbjct: 55 LLNRTDIPVASGAVKPLMRNLIIADNVHG------------------------------- 83
Query: 61 NYGLRKAFLPQGGRKYAPLRQPTAQQVLINAI--SAGPITVFVMGSHTNFAIFLMNNPHL 118
GL LP+ +AP + TA +++ + S P+T+ G TN A+ L ++P L
Sbjct: 84 ESGLDGPALPEPA--FAP-QNCTAVELMAKTLRESEEPVTIVSTGPQTNVALLLNSHPEL 140
Query: 119 KKNIEHIYVMGGAIRSDCFNSTNSSQSEQCDSIGNLYPDDSNPYAEFNIFSDPFAAYTVL 178
I I +MGGA+ +GN P AEFNI+ DP AA V
Sbjct: 141 HSKIARIVIMGGAM-----------------GLGNW-----TPAAEFNIYVDPEAAEIVF 178
Query: 179 HSGIPVTIIPLDAT 192
SGIPV + LD T
Sbjct: 179 QSGIPVVMAGLDVT 192
Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 64/257 (24%), Positives = 106/257 (41%), Gaps = 53/257 (20%)
Query: 405 MGKPVVFDIDMSAGDFLALIYLLKLPVELINLKGILVSSTGWATSATVDVVYDLLHMMGR 464
M P++ D D D +A++ L P +++K I S+ T+ V +L ++ R
Sbjct: 1 MALPILLDCDPGHDDAIAIVLALASPE--LDVKAITSSAGNQTPEKTLRNVLRMLTLLNR 58
Query: 465 DDIPVGLGDVFAVGEVNPKFPPIGGCKYAKAIPLGSGGFLDSDTLYGLA-RDLPRSPRRY 523
DIPV A G V P + +D ++G + D P P
Sbjct: 59 TDIPV------ASGAVKPLM----------------RNLIIADNVHGESGLDGPALPEPA 96
Query: 524 TAENSVRFGASQDNDDPELRQPLAVDVWKSIVESIEPGSKITILTNGPLTNLAQIIGLQN 583
A Q+ EL K++ ES EP +TI++ GP TN+A ++
Sbjct: 97 FA--------PQNCTAVELMA-------KTLRESEEP---VTIVSTGPQTNVALLLNSHP 138
Query: 584 S-SSVIQDVYIVGGNKGQDNEKGNVFTVPSSKYAEFNMFLDPLAAKAVFESKLEIKLIPL 642
S I + I+GG G N + AEFN+++DP AA+ VF+S + + + L
Sbjct: 139 ELHSKIARIVIMGGAMGLGN---------WTPAAEFNIYVDPEAAEIVFQSGIPVVMAGL 189
Query: 643 HMQRRVASFFKILHKLR 659
+ + + + R
Sbjct: 190 DVTHKAQIHVEDTERFR 206
>sp|Q8FJY8|RIHA_ECOL6 Pyrimidine-specific ribonucleoside hydrolase RihA OS=Escherichia
coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=rihA
PE=3 SV=2
Length = 311
Score = 60.8 bits (146), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 78/194 (40%), Gaps = 58/194 (29%)
Query: 1 MMNRDDIPVGVGGEGGILPNGTILPDVGGYQPIIDQGMSTAGECRYRQAIPVGQRLYVNT 60
++NR DIPV G ++ N I +V G
Sbjct: 55 LLNRTDIPVASGAVKPLMRNLIIADNVHG------------------------------- 83
Query: 61 NYGLRKAFLPQGGRKYAPLRQPTAQQVLINAI--SAGPITVFVMGSHTNFAIFLMNNPHL 118
GL LP+ +AP + TA +++ + S P+T+ G TN A+ L ++P L
Sbjct: 84 ESGLDGPALPE--PTFAP-QNCTAVELMAKTLRESEEPVTIVSTGPQTNVALLLNSHPEL 140
Query: 119 KKNIEHIYVMGGAIRSDCFNSTNSSQSEQCDSIGNLYPDDSNPYAEFNIFSDPFAAYTVL 178
I I +MGGA+ +GN P AEFNI+ DP AA V
Sbjct: 141 HSKIARIVIMGGAM-----------------GLGNW-----TPAAEFNIYVDPEAAEIVF 178
Query: 179 HSGIPVTIIPLDAT 192
SGIPV + LD T
Sbjct: 179 QSGIPVVMAGLDVT 192
Score = 50.8 bits (120), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 64/257 (24%), Positives = 106/257 (41%), Gaps = 53/257 (20%)
Query: 405 MGKPVVFDIDMSAGDFLALIYLLKLPVELINLKGILVSSTGWATSATVDVVYDLLHMMGR 464
M P++ D D D +A++ L P +++K I S+ T+ V +L ++ R
Sbjct: 1 MALPILLDCDPGHDDAIAIVLALASPE--LDVKAITSSAGNQTPEKTLRNVLRMLTLLNR 58
Query: 465 DDIPVGLGDVFAVGEVNPKFPPIGGCKYAKAIPLGSGGFLDSDTLYGLA-RDLPRSPRRY 523
DIPV A G V P + +D ++G + D P P
Sbjct: 59 TDIPV------ASGAVKPLM----------------RNLIIADNVHGESGLDGPALPEPT 96
Query: 524 TAENSVRFGASQDNDDPELRQPLAVDVWKSIVESIEPGSKITILTNGPLTNLAQIIGLQN 583
A Q+ EL K++ ES EP +TI++ GP TN+A ++
Sbjct: 97 FA--------PQNCTAVELMA-------KTLRESEEP---VTIVSTGPQTNVALLLNSHP 138
Query: 584 S-SSVIQDVYIVGGNKGQDNEKGNVFTVPSSKYAEFNMFLDPLAAKAVFESKLEIKLIPL 642
S I + I+GG G N + AEFN+++DP AA+ VF+S + + + L
Sbjct: 139 ELHSKIARIVIMGGAMGLGN---------WTPAAEFNIYVDPEAAEIVFQSGIPVVMAGL 189
Query: 643 HMQRRVASFFKILHKLR 659
+ + + + R
Sbjct: 190 DVTHKAQIHVEDTERFR 206
>sp|A1A8R9|RIHA_ECOK1 Pyrimidine-specific ribonucleoside hydrolase RihA OS=Escherichia
coli O1:K1 / APEC GN=rihA PE=3 SV=1
Length = 311
Score = 60.8 bits (146), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 78/194 (40%), Gaps = 58/194 (29%)
Query: 1 MMNRDDIPVGVGGEGGILPNGTILPDVGGYQPIIDQGMSTAGECRYRQAIPVGQRLYVNT 60
++NR DIPV G ++ N I +V G
Sbjct: 55 LLNRTDIPVASGAVKPLMRNLIIADNVHG------------------------------- 83
Query: 61 NYGLRKAFLPQGGRKYAPLRQPTAQQVLINAI--SAGPITVFVMGSHTNFAIFLMNNPHL 118
GL LP+ +AP + TA +++ + S P+T+ G TN A+ L ++P L
Sbjct: 84 ESGLDGPALPE--PTFAP-QNCTAVELMAKTLRESEEPVTIVSTGPQTNVALLLNSHPEL 140
Query: 119 KKNIEHIYVMGGAIRSDCFNSTNSSQSEQCDSIGNLYPDDSNPYAEFNIFSDPFAAYTVL 178
I I +MGGA+ +GN P AEFNI+ DP AA V
Sbjct: 141 HSKIARIVIMGGAM-----------------GLGNW-----TPAAEFNIYVDPEAAEIVF 178
Query: 179 HSGIPVTIIPLDAT 192
SGIPV + LD T
Sbjct: 179 QSGIPVVMAGLDVT 192
Score = 50.8 bits (120), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 64/257 (24%), Positives = 106/257 (41%), Gaps = 53/257 (20%)
Query: 405 MGKPVVFDIDMSAGDFLALIYLLKLPVELINLKGILVSSTGWATSATVDVVYDLLHMMGR 464
M P++ D D D +A++ L P +++K I S+ T+ V +L ++ R
Sbjct: 1 MALPILLDCDPGHDDAIAIVLALASPE--LDVKAITSSAGNQTPEKTLRNVLRMLTLLNR 58
Query: 465 DDIPVGLGDVFAVGEVNPKFPPIGGCKYAKAIPLGSGGFLDSDTLYGLA-RDLPRSPRRY 523
DIPV A G V P + +D ++G + D P P
Sbjct: 59 TDIPV------ASGAVKPLM----------------RNLIIADNVHGESGLDGPALPEPT 96
Query: 524 TAENSVRFGASQDNDDPELRQPLAVDVWKSIVESIEPGSKITILTNGPLTNLAQIIGLQN 583
A Q+ EL K++ ES EP +TI++ GP TN+A ++
Sbjct: 97 FA--------PQNCTAVELMA-------KTLRESEEP---VTIVSTGPQTNVALLLNSHP 138
Query: 584 S-SSVIQDVYIVGGNKGQDNEKGNVFTVPSSKYAEFNMFLDPLAAKAVFESKLEIKLIPL 642
S I + I+GG G N + AEFN+++DP AA+ VF+S + + + L
Sbjct: 139 ELHSKIARIVIMGGAMGLGN---------WTPAAEFNIYVDPEAAEIVFQSGIPVVMAGL 189
Query: 643 HMQRRVASFFKILHKLR 659
+ + + + R
Sbjct: 190 DVTHKAQIHVEDTERFR 206
>sp|B7MFR7|RIHA_ECO45 Pyrimidine-specific ribonucleoside hydrolase RihA OS=Escherichia
coli O45:K1 (strain S88 / ExPEC) GN=rihA PE=3 SV=1
Length = 311
Score = 60.8 bits (146), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 78/194 (40%), Gaps = 58/194 (29%)
Query: 1 MMNRDDIPVGVGGEGGILPNGTILPDVGGYQPIIDQGMSTAGECRYRQAIPVGQRLYVNT 60
++NR DIPV G ++ N I +V G
Sbjct: 55 LLNRTDIPVASGAVKPLMRNLIIADNVHG------------------------------- 83
Query: 61 NYGLRKAFLPQGGRKYAPLRQPTAQQVLINAI--SAGPITVFVMGSHTNFAIFLMNNPHL 118
GL LP+ +AP + TA +++ + S P+T+ G TN A+ L ++P L
Sbjct: 84 ESGLDGPALPE--PTFAP-QNCTAVELMAKTLRESEEPVTIVSTGPQTNVALLLNSHPEL 140
Query: 119 KKNIEHIYVMGGAIRSDCFNSTNSSQSEQCDSIGNLYPDDSNPYAEFNIFSDPFAAYTVL 178
I I +MGGA+ +GN P AEFNI+ DP AA V
Sbjct: 141 HSKIARIVIMGGAM-----------------GLGNW-----TPAAEFNIYVDPEAAEIVF 178
Query: 179 HSGIPVTIIPLDAT 192
SGIPV + LD T
Sbjct: 179 QSGIPVVMAGLDVT 192
Score = 50.8 bits (120), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 64/257 (24%), Positives = 106/257 (41%), Gaps = 53/257 (20%)
Query: 405 MGKPVVFDIDMSAGDFLALIYLLKLPVELINLKGILVSSTGWATSATVDVVYDLLHMMGR 464
M P++ D D D +A++ L P +++K I S+ T+ V +L ++ R
Sbjct: 1 MALPILLDCDPGHDDAIAIVLALASPE--LDVKAITSSAGNQTPEKTLRNVLRMLTLLNR 58
Query: 465 DDIPVGLGDVFAVGEVNPKFPPIGGCKYAKAIPLGSGGFLDSDTLYGLA-RDLPRSPRRY 523
DIPV A G V P + +D ++G + D P P
Sbjct: 59 TDIPV------ASGAVKPLM----------------RNLIIADNVHGESGLDGPALPEPT 96
Query: 524 TAENSVRFGASQDNDDPELRQPLAVDVWKSIVESIEPGSKITILTNGPLTNLAQIIGLQN 583
A Q+ EL K++ ES EP +TI++ GP TN+A ++
Sbjct: 97 FA--------PQNCTAVELMA-------KTLRESEEP---VTIVSTGPQTNVALLLNSHP 138
Query: 584 S-SSVIQDVYIVGGNKGQDNEKGNVFTVPSSKYAEFNMFLDPLAAKAVFESKLEIKLIPL 642
S I + I+GG G N + AEFN+++DP AA+ VF+S + + + L
Sbjct: 139 ELHSKIARIVIMGGAMGLGN---------WTPAAEFNIYVDPEAAEIVFQSGIPVVMAGL 189
Query: 643 HMQRRVASFFKILHKLR 659
+ + + + R
Sbjct: 190 DVTHKAQIHVEDTERFR 206
>sp|Q0TK29|RIHA_ECOL5 Pyrimidine-specific ribonucleoside hydrolase RihA OS=Escherichia
coli O6:K15:H31 (strain 536 / UPEC) GN=rihA PE=3 SV=1
Length = 311
Score = 60.8 bits (146), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 78/194 (40%), Gaps = 58/194 (29%)
Query: 1 MMNRDDIPVGVGGEGGILPNGTILPDVGGYQPIIDQGMSTAGECRYRQAIPVGQRLYVNT 60
++NR DIPV G ++ N I +V G
Sbjct: 55 LLNRTDIPVASGAVKPLMRNLIIADNVHG------------------------------- 83
Query: 61 NYGLRKAFLPQGGRKYAPLRQPTAQQVLINAI--SAGPITVFVMGSHTNFAIFLMNNPHL 118
GL LP+ +AP + TA +++ + S P+T+ G TN A+ L ++P L
Sbjct: 84 ESGLDGPALPE--PTFAP-QNCTAVELMAKTLCESEEPVTIVSTGPQTNVALLLNSHPEL 140
Query: 119 KKNIEHIYVMGGAIRSDCFNSTNSSQSEQCDSIGNLYPDDSNPYAEFNIFSDPFAAYTVL 178
I I +MGGA+ +GN P AEFNI+ DP AA V
Sbjct: 141 HSKIARIVIMGGAM-----------------GLGNW-----TPAAEFNIYVDPEAAEIVF 178
Query: 179 HSGIPVTIIPLDAT 192
SGIPV + LD T
Sbjct: 179 QSGIPVVMAGLDVT 192
Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 64/257 (24%), Positives = 106/257 (41%), Gaps = 53/257 (20%)
Query: 405 MGKPVVFDIDMSAGDFLALIYLLKLPVELINLKGILVSSTGWATSATVDVVYDLLHMMGR 464
M P++ D D D +A++ L P +++K I S+ T+ V +L ++ R
Sbjct: 1 MALPILLDCDPGHDDAIAIVLALASPE--LDVKAITSSAGNQTPEKTLRNVLRMLTLLNR 58
Query: 465 DDIPVGLGDVFAVGEVNPKFPPIGGCKYAKAIPLGSGGFLDSDTLYGLA-RDLPRSPRRY 523
DIPV A G V P + +D ++G + D P P
Sbjct: 59 TDIPV------ASGAVKPLM----------------RNLIIADNVHGESGLDGPALPEPT 96
Query: 524 TAENSVRFGASQDNDDPELRQPLAVDVWKSIVESIEPGSKITILTNGPLTNLAQIIGLQN 583
A Q+ EL K++ ES EP +TI++ GP TN+A ++
Sbjct: 97 FA--------PQNCTAVELMA-------KTLCESEEP---VTIVSTGPQTNVALLLNSHP 138
Query: 584 S-SSVIQDVYIVGGNKGQDNEKGNVFTVPSSKYAEFNMFLDPLAAKAVFESKLEIKLIPL 642
S I + I+GG G N + AEFN+++DP AA+ VF+S + + + L
Sbjct: 139 ELHSKIARIVIMGGAMGLGN---------WTPAAEFNIYVDPEAAEIVFQSGIPVVMAGL 189
Query: 643 HMQRRVASFFKILHKLR 659
+ + + + R
Sbjct: 190 DVTHKAQIHVEDTERFR 206
>sp|B7MRT1|RIHA_ECO81 Pyrimidine-specific ribonucleoside hydrolase RihA OS=Escherichia
coli O81 (strain ED1a) GN=rihA PE=3 SV=1
Length = 311
Score = 60.8 bits (146), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 78/194 (40%), Gaps = 58/194 (29%)
Query: 1 MMNRDDIPVGVGGEGGILPNGTILPDVGGYQPIIDQGMSTAGECRYRQAIPVGQRLYVNT 60
++NR DIPV G ++ N I +V G
Sbjct: 55 LLNRTDIPVASGAVKPLMRNLIIADNVHG------------------------------- 83
Query: 61 NYGLRKAFLPQGGRKYAPLRQPTAQQVLINAI--SAGPITVFVMGSHTNFAIFLMNNPHL 118
GL LP+ +AP + TA +++ + S P+T+ G TN A+ L ++P L
Sbjct: 84 ESGLDGPALPE--PTFAP-QNCTAVELMAKTLCESEEPVTIVSTGPQTNVALLLNSHPEL 140
Query: 119 KKNIEHIYVMGGAIRSDCFNSTNSSQSEQCDSIGNLYPDDSNPYAEFNIFSDPFAAYTVL 178
I I +MGGA+ +GN P AEFNI+ DP AA V
Sbjct: 141 HSKIARIVIMGGAM-----------------GLGNW-----TPAAEFNIYVDPEAAEIVF 178
Query: 179 HSGIPVTIIPLDAT 192
SGIPV + LD T
Sbjct: 179 QSGIPVVMAGLDVT 192
Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 64/257 (24%), Positives = 106/257 (41%), Gaps = 53/257 (20%)
Query: 405 MGKPVVFDIDMSAGDFLALIYLLKLPVELINLKGILVSSTGWATSATVDVVYDLLHMMGR 464
M P++ D D D +A++ L P +++K I S+ T+ V +L ++ R
Sbjct: 1 MALPILLDCDPGHDDAIAIVLALASPE--LDVKAITSSAGNQTPEKTLRNVLRMLTLLNR 58
Query: 465 DDIPVGLGDVFAVGEVNPKFPPIGGCKYAKAIPLGSGGFLDSDTLYGLA-RDLPRSPRRY 523
DIPV A G V P + +D ++G + D P P
Sbjct: 59 TDIPV------ASGAVKPLM----------------RNLIIADNVHGESGLDGPALPEPT 96
Query: 524 TAENSVRFGASQDNDDPELRQPLAVDVWKSIVESIEPGSKITILTNGPLTNLAQIIGLQN 583
A Q+ EL K++ ES EP +TI++ GP TN+A ++
Sbjct: 97 FA--------PQNCTAVELMA-------KTLCESEEP---VTIVSTGPQTNVALLLNSHP 138
Query: 584 S-SSVIQDVYIVGGNKGQDNEKGNVFTVPSSKYAEFNMFLDPLAAKAVFESKLEIKLIPL 642
S I + I+GG G N + AEFN+++DP AA+ VF+S + + + L
Sbjct: 139 ELHSKIARIVIMGGAMGLGN---------WTPAAEFNIYVDPEAAEIVFQSGIPVVMAGL 189
Query: 643 HMQRRVASFFKILHKLR 659
+ + + + R
Sbjct: 190 DVTHKAQIHVEDTERFR 206
>sp|B5FNA2|RIHA_SALDC Pyrimidine-specific ribonucleoside hydrolase RihA OS=Salmonella
dublin (strain CT_02021853) GN=rihA PE=3 SV=1
Length = 311
Score = 60.8 bits (146), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 59/128 (46%), Gaps = 33/128 (25%)
Query: 67 AFLPQGGRKYAPLRQPTAQQVLINAI--SAGPITVFVMGSHTNFAIFLMNNPHLKKNIEH 124
+F PQ G TA +++ + S+ P+T+ G TN A+ L ++P L I
Sbjct: 96 SFAPQSG---------TAVELMAKTLRESSQPVTIVSTGPQTNVALLLNSHPELHTKIAR 146
Query: 125 IYVMGGAIRSDCFNSTNSSQSEQCDSIGNLYPDDSNPYAEFNIFSDPFAAYTVLHSGIPV 184
I +MGGA+ +GN P AEFNI+ DP AA V SGIPV
Sbjct: 147 IVIMGGAM-----------------GLGNW-----TPAAEFNIYVDPEAAEIVFQSGIPV 184
Query: 185 TIIPLDAT 192
+ LD T
Sbjct: 185 VMAGLDVT 192
Score = 47.8 bits (112), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 65/257 (25%), Positives = 106/257 (41%), Gaps = 53/257 (20%)
Query: 405 MGKPVVFDIDMSAGDFLALIYLLKLPVELINLKGILVSSTGWATSATVDVVYDLLHMMGR 464
M P++ D D D +AL+ L P + +K I S+ T+ V +L ++ R
Sbjct: 1 MALPIIIDCDPGHDDAIALVLSLASPE--LEVKAITSSAGNQTPEKTLRNVLRMLTLLKR 58
Query: 465 DDIPVGLGDVFAVGEVNPKFPPIGGCKYAKAIPLGSGGFLDSDTLYGLA-RDLPRSPRRY 523
DIPV A G V P + +D ++G + D P P
Sbjct: 59 PDIPV------AGGAVKPLM----------------RELIIADNVHGESGLDGPALP--- 93
Query: 524 TAENSVRFGASQDNDDPELRQPLAVDVWKSIVESIEPGSKITILTNGPLTNLAQIIGLQN 583
E S A Q EL K++ ES +P +TI++ GP TN+A ++
Sbjct: 94 --EPSF---APQSGTAVELMA-------KTLRESSQP---VTIVSTGPQTNVALLLNSHP 138
Query: 584 S-SSVIQDVYIVGGNKGQDNEKGNVFTVPSSKYAEFNMFLDPLAAKAVFESKLEIKLIPL 642
+ I + I+GG G N + AEFN+++DP AA+ VF+S + + + L
Sbjct: 139 ELHTKIARIVIMGGAMGLGN---------WTPAAEFNIYVDPEAAEIVFQSGIPVVMAGL 189
Query: 643 HMQRRVASFFKILHKLR 659
+ + + + R
Sbjct: 190 DVTHKAQIHAADIERFR 206
>sp|Q9P6J4|YHD6_SCHPO Uncharacterized protein C1683.06c OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPBC1683.06c PE=3 SV=1
Length = 310
Score = 60.8 bits (146), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 67/157 (42%), Gaps = 27/157 (17%)
Query: 57 YVNTNYGLRKAFLPQGGRKYAPLRQPTAQQVLINAI---SAGPITVFVMGSHTNFAIFLM 113
+V+ G A LP RK + A +I+ + G IT+ +G TN A+ L
Sbjct: 78 HVHGASGFEGAVLPPPSRKE---NEGHAVDFIIDTLRNNEPGTITICTIGPLTNIALALN 134
Query: 114 NNPHLKKNIEHIYVMGGAIRSDCFNSTNSSQSEQCDSIGNLYPDDSNPYAEFNIFSDPFA 173
P + + + I +M GA +GN+ P AEFNI+ DP A
Sbjct: 135 KAPEVIQRAKQIVMMAGAF----------------SEVGNI-----TPAAEFNIYVDPHA 173
Query: 174 AYTVLHSGIPVTIIPLDATKTIPVSENFFVEFERRQN 210
A VL SGIP+ ++PLD T + S E N
Sbjct: 174 AQMVLSSGIPIVMMPLDITHQLHTSAKRIARMEALPN 210
Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 62/112 (55%), Gaps = 8/112 (7%)
Query: 547 AVDVWKSIVESIEPGSKITILTNGPLTNLAQIIGLQNSSSVIQDVYIVGGNKGQDNEKGN 606
AVD + + EPG+ ITI T GPLTN+A + L + VIQ + G +E GN
Sbjct: 102 AVDFIIDTLRNNEPGT-ITICTIGPLTNIA--LALNKAPEVIQRAKQIVMMAGAFSEVGN 158
Query: 607 VFTVPSSKYAEFNMFLDPLAAKAVFESKLEIKLIPLHMQRRVASFFKILHKL 658
+ + AEFN+++DP AA+ V S + I ++PL + ++ + K + ++
Sbjct: 159 I-----TPAAEFNIYVDPHAAQMVLSSGIPIVMMPLDITHQLHTSAKRIARM 205
>sp|B4TPY1|RIHA_SALSV Pyrimidine-specific ribonucleoside hydrolase RihA OS=Salmonella
schwarzengrund (strain CVM19633) GN=rihA PE=3 SV=1
Length = 311
Score = 60.8 bits (146), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 59/128 (46%), Gaps = 33/128 (25%)
Query: 67 AFLPQGGRKYAPLRQPTAQQVLINAI--SAGPITVFVMGSHTNFAIFLMNNPHLKKNIEH 124
+F PQ G TA +++ + S+ P+T+ G TN A+ L ++P L I
Sbjct: 96 SFAPQSG---------TAVELMAKTLRESSQPVTIVSTGPQTNVALLLNSHPELHTKIAR 146
Query: 125 IYVMGGAIRSDCFNSTNSSQSEQCDSIGNLYPDDSNPYAEFNIFSDPFAAYTVLHSGIPV 184
I +MGGA+ +GN P AEFNI+ DP AA V SGIPV
Sbjct: 147 IVIMGGAM-----------------GLGNW-----TPAAEFNIYVDPEAAEIVFQSGIPV 184
Query: 185 TIIPLDAT 192
+ LD T
Sbjct: 185 VMAGLDVT 192
Score = 47.8 bits (112), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 65/257 (25%), Positives = 106/257 (41%), Gaps = 53/257 (20%)
Query: 405 MGKPVVFDIDMSAGDFLALIYLLKLPVELINLKGILVSSTGWATSATVDVVYDLLHMMGR 464
M P++ D D D +AL+ L P + +K I S+ T+ V +L ++ R
Sbjct: 1 MALPIIIDCDPGHDDAIALVLALASPE--LEVKAITSSAGNQTPDKTLRNVLRMLTLLKR 58
Query: 465 DDIPVGLGDVFAVGEVNPKFPPIGGCKYAKAIPLGSGGFLDSDTLYGLA-RDLPRSPRRY 523
DIPV A G V P + +D ++G + D P P
Sbjct: 59 PDIPV------AGGAVKPLM----------------RELIIADNVHGESGLDGPALP--- 93
Query: 524 TAENSVRFGASQDNDDPELRQPLAVDVWKSIVESIEPGSKITILTNGPLTNLAQIIGLQN 583
E S A Q EL K++ ES +P +TI++ GP TN+A ++
Sbjct: 94 --EPSF---APQSGTAVELMA-------KTLRESSQP---VTIVSTGPQTNVALLLNSHP 138
Query: 584 S-SSVIQDVYIVGGNKGQDNEKGNVFTVPSSKYAEFNMFLDPLAAKAVFESKLEIKLIPL 642
+ I + I+GG G N + AEFN+++DP AA+ VF+S + + + L
Sbjct: 139 ELHTKIARIVIMGGAMGLGN---------WTPAAEFNIYVDPEAAEIVFQSGIPVVMAGL 189
Query: 643 HMQRRVASFFKILHKLR 659
+ + + + R
Sbjct: 190 DVTHKAQIHAADIERFR 206
>sp|B5EZA2|RIHA_SALA4 Pyrimidine-specific ribonucleoside hydrolase RihA OS=Salmonella
agona (strain SL483) GN=rihA PE=3 SV=1
Length = 311
Score = 60.8 bits (146), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 59/128 (46%), Gaps = 33/128 (25%)
Query: 67 AFLPQGGRKYAPLRQPTAQQVLINAI--SAGPITVFVMGSHTNFAIFLMNNPHLKKNIEH 124
+F PQ G TA +++ + S+ P+T+ G TN A+ L ++P L I
Sbjct: 96 SFAPQSG---------TAVELMAKTLRESSQPVTIVSTGPQTNVALLLNSHPELHAKIAR 146
Query: 125 IYVMGGAIRSDCFNSTNSSQSEQCDSIGNLYPDDSNPYAEFNIFSDPFAAYTVLHSGIPV 184
I +MGGA+ +GN P AEFNI+ DP AA V SGIPV
Sbjct: 147 IVIMGGAM-----------------GLGNW-----TPAAEFNIYVDPEAAEIVFQSGIPV 184
Query: 185 TIIPLDAT 192
+ LD T
Sbjct: 185 VMAGLDVT 192
Score = 48.1 bits (113), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 65/257 (25%), Positives = 106/257 (41%), Gaps = 53/257 (20%)
Query: 405 MGKPVVFDIDMSAGDFLALIYLLKLPVELINLKGILVSSTGWATSATVDVVYDLLHMMGR 464
M P++ D D D +AL+ L P + +K I S+ T+ V +L ++ R
Sbjct: 1 MALPIIIDCDPGHDDAIALVLALASPE--LEVKAITSSAGNQTPEKTLRNVLRMLTLLKR 58
Query: 465 DDIPVGLGDVFAVGEVNPKFPPIGGCKYAKAIPLGSGGFLDSDTLYGLA-RDLPRSPRRY 523
DIPV A G V P + +D ++G + D P P
Sbjct: 59 PDIPV------AGGAVKPLM----------------RELIIADNVHGESGLDGPALP--- 93
Query: 524 TAENSVRFGASQDNDDPELRQPLAVDVWKSIVESIEPGSKITILTNGPLTNLAQIIGLQN 583
E S A Q EL K++ ES +P +TI++ GP TN+A ++
Sbjct: 94 --EPSF---APQSGTAVELMA-------KTLRESSQP---VTIVSTGPQTNVALLLNSHP 138
Query: 584 S-SSVIQDVYIVGGNKGQDNEKGNVFTVPSSKYAEFNMFLDPLAAKAVFESKLEIKLIPL 642
+ I + I+GG G N + AEFN+++DP AA+ VF+S + + + L
Sbjct: 139 ELHAKIARIVIMGGAMGLGN---------WTPAAEFNIYVDPEAAEIVFQSGIPVVMAGL 189
Query: 643 HMQRRVASFFKILHKLR 659
+ + + + R
Sbjct: 190 DVTHKAQIHAADIERFR 206
>sp|B1LLA1|RIHA_ECOSM Pyrimidine-specific ribonucleoside hydrolase RihA OS=Escherichia
coli (strain SMS-3-5 / SECEC) GN=rihA PE=3 SV=1
Length = 311
Score = 60.1 bits (144), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 64/137 (46%), Gaps = 27/137 (19%)
Query: 58 VNTNYGLRKAFLPQGGRKYAPLRQPTAQQVLINAI--SAGPITVFVMGSHTNFAIFLMNN 115
V+ GL LP+ +AP + TA +++ + S P+T+ G TN A+ L ++
Sbjct: 81 VHGESGLDGPALPE--PTFAP-QNCTAVELMAKTLCESEEPVTIVSTGPQTNVALLLNSH 137
Query: 116 PHLKKNIEHIYVMGGAIRSDCFNSTNSSQSEQCDSIGNLYPDDSNPYAEFNIFSDPFAAY 175
P L I I +MGGA+ +GN P AEFNI+ DP AA
Sbjct: 138 PELHSKIARIVIMGGAM-----------------GLGNW-----TPAAEFNIYVDPEAAE 175
Query: 176 TVLHSGIPVTIIPLDAT 192
V SGIPV + LD T
Sbjct: 176 IVFQSGIPVVMAGLDVT 192
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 67/264 (25%), Positives = 107/264 (40%), Gaps = 67/264 (25%)
Query: 405 MGKPVVFDIDMSAGDFLALIYLLKLPVELINLKGILVSSTGWATSATVDVVYDLLHMMGR 464
M P++ D D D +A++ L P +++K I S+ T+ V +L ++ R
Sbjct: 1 MALPILLDCDPGHDDAIAIVLALASPE--LDVKAITSSAGNQTPEKTLRNVLCMLTLLNR 58
Query: 465 DDIPVGLGDVFAVGEVNPKFPPIGGCKYAKAIPLGSGGFLDSDTLYGLARDLPRSPRRYT 524
DIPV A G V P L RDL
Sbjct: 59 TDIPV------ASGAVKP-----------------------------LMRDL------II 77
Query: 525 AENSVRFGASQDNDDPELRQPL-------AVDVW-KSIVESIEPGSKITILTNGPLTNLA 576
A+N D P L +P AV++ K++ ES EP +TI++ GP TN+A
Sbjct: 78 ADN---VHGESGLDGPALPEPTFAPQNCTAVELMAKTLCESEEP---VTIVSTGPQTNVA 131
Query: 577 QIIGLQNS-SSVIQDVYIVGGNKGQDNEKGNVFTVPSSKYAEFNMFLDPLAAKAVFESKL 635
++ S I + I+GG G N + AEFN+++DP AA+ VF+S +
Sbjct: 132 LLLNSHPELHSKIARIVIMGGAMGLGN---------WTPAAEFNIYVDPEAAEIVFQSGI 182
Query: 636 EIKLIPLHMQRRVASFFKILHKLR 659
+ + L + + + + R
Sbjct: 183 PVVMAGLDVTHKAQIHVEDTERFR 206
>sp|A4W829|RIHA_ENT38 Pyrimidine-specific ribonucleoside hydrolase RihA OS=Enterobacter
sp. (strain 638) GN=rihA PE=3 SV=1
Length = 313
Score = 60.1 bits (144), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 55/112 (49%), Gaps = 24/112 (21%)
Query: 83 TAQQVLINAI--SAGPITVFVMGSHTNFAIFLMNNPHLKKNIEHIYVMGGAIRSDCFNST 140
TA ++++ + S P+T+ G TN A+ L ++P L + I I +MGG++
Sbjct: 103 TAVELMVKVLRESDEPVTLVATGPQTNVALLLNSHPELHRKIARIVIMGGSM-------- 154
Query: 141 NSSQSEQCDSIGNLYPDDSNPYAEFNIFSDPFAAYTVLHSGIPVTIIPLDAT 192
+GN P AEFNIF DP AA V SG+P+ + LD T
Sbjct: 155 ---------GLGNW-----TPAAEFNIFVDPEAAEIVFQSGLPIVMAGLDVT 192
Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 68/264 (25%), Positives = 103/264 (39%), Gaps = 67/264 (25%)
Query: 405 MGKPVVFDIDMSAGDFLALIYLLKLPVELINLKGILVSSTGWATSATVDVVYDLLHMMGR 464
M P++ D D D +AL+ L P + LK + S+ T+ V +L ++ R
Sbjct: 1 MALPIILDCDPGHDDAIALVLALASPE--LALKAVTSSAGNQTPDKTLRNVLRMLTLLNR 58
Query: 465 DDIPVGLGDVFAVGEVNPKFPPIGGCKYAKAIPLGSGGFLDSDTLYGLARDLPRSPRRYT 524
DIPV GG + L RDL
Sbjct: 59 TDIPVA-----------------GGARKP------------------LMRDL------II 77
Query: 525 AENSVRFGASQDNDDPELRQPL-------AVDVW-KSIVESIEPGSKITILTNGPLTNLA 576
A+N D P L +P AV++ K + ES EP +T++ GP TN+A
Sbjct: 78 ADN---VHGETGLDGPALPEPTFKPQACTAVELMVKVLRESDEP---VTLVATGPQTNVA 131
Query: 577 QIIGLQNS-SSVIQDVYIVGGNKGQDNEKGNVFTVPSSKYAEFNMFLDPLAAKAVFESKL 635
++ I + I+GG+ G N + AEFN+F+DP AA+ VF+S L
Sbjct: 132 LLLNSHPELHRKIARIVIMGGSMGLGN---------WTPAAEFNIFVDPEAAEIVFQSGL 182
Query: 636 EIKLIPLHMQRRVASFFKILHKLR 659
I + L + R + + R
Sbjct: 183 PIVMAGLDVTHRAQIMSADVERFR 206
>sp|A9MKC6|RIHA_SALAR Pyrimidine-specific ribonucleoside hydrolase RihA OS=Salmonella
arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980)
GN=rihA PE=3 SV=1
Length = 311
Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 64/137 (46%), Gaps = 27/137 (19%)
Query: 58 VNTNYGLRKAFLPQGGRKYAPLRQPTAQQVLINAI--SAGPITVFVMGSHTNFAIFLMNN 115
V+ GL LP+ +AP + TA +++ + S P+T+ G TN A+ L ++
Sbjct: 81 VHGESGLDGPALPE--PSFAP-QNCTAVELMAKTLRESPQPVTLVATGPQTNVALLLNSH 137
Query: 116 PHLKKNIEHIYVMGGAIRSDCFNSTNSSQSEQCDSIGNLYPDDSNPYAEFNIFSDPFAAY 175
P L I I +MGGA+ +GN P AEFNI+ DP AA
Sbjct: 138 PELHAKIARIVIMGGAM-----------------GLGNW-----TPAAEFNIYVDPEAAE 175
Query: 176 TVLHSGIPVTIIPLDAT 192
V SGIPV + LD T
Sbjct: 176 IVFQSGIPVLMAGLDVT 192
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 63/257 (24%), Positives = 108/257 (42%), Gaps = 53/257 (20%)
Query: 405 MGKPVVFDIDMSAGDFLALIYLLKLPVELINLKGILVSSTGWATSATVDVVYDLLHMMGR 464
M P++ D D D +A++ L P +++K I S+ T+ V +L ++ R
Sbjct: 1 MALPIILDCDPGHDDAIAIVLALASPE--LDVKAITSSAGNQTPDKTLRNVLRMLTLLKR 58
Query: 465 DDIPVGLGDVFAVGEVNPKFPPIGGCKYAKAIPLGSGGFLDSDTLYGLA-RDLPRSPRRY 523
DIPV A G V P + + +D ++G + D P P
Sbjct: 59 SDIPV------AGGAVKPLMREL----------------IIADNVHGESGLDGPALP--- 93
Query: 524 TAENSVRFGASQDNDDPELRQPLAVDVWKSIVESIEPGSKITILTNGPLTNLAQIIGLQN 583
E S A Q+ EL K++ ES +P +T++ GP TN+A ++
Sbjct: 94 --EPSF---APQNCTAVELMA-------KTLRESPQP---VTLVATGPQTNVALLLNSHP 138
Query: 584 S-SSVIQDVYIVGGNKGQDNEKGNVFTVPSSKYAEFNMFLDPLAAKAVFESKLEIKLIPL 642
+ I + I+GG G N + AEFN+++DP AA+ VF+S + + + L
Sbjct: 139 ELHAKIARIVIMGGAMGLGN---------WTPAAEFNIYVDPEAAEIVFQSGIPVLMAGL 189
Query: 643 HMQRRVASFFKILHKLR 659
+ + + + R
Sbjct: 190 DVTHKAQIHTADIERFR 206
>sp|B5BCD9|RIHA_SALPK Pyrimidine-specific ribonucleoside hydrolase RihA OS=Salmonella
paratyphi A (strain AKU_12601) GN=rihA PE=3 SV=1
Length = 311
Score = 58.5 bits (140), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 59/128 (46%), Gaps = 33/128 (25%)
Query: 67 AFLPQGGRKYAPLRQPTAQQVLINAI--SAGPITVFVMGSHTNFAIFLMNNPHLKKNIEH 124
+F PQ G TA +++ + S+ P+T+ G TN A+ L ++P L I
Sbjct: 96 SFAPQSG---------TAVELMAKTLRESSQPVTIVSTGPQTNVALLLNSHPELHAKIAR 146
Query: 125 IYVMGGAIRSDCFNSTNSSQSEQCDSIGNLYPDDSNPYAEFNIFSDPFAAYTVLHSGIPV 184
I +MGGA+ +GN P AEFNI+ DP AA V SGIPV
Sbjct: 147 IVIMGGAM-----------------GLGNW-----TPAAEFNIYVDPEAAEIVFQSGIPV 184
Query: 185 TIIPLDAT 192
+ L+ T
Sbjct: 185 VMAGLNVT 192
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 65/257 (25%), Positives = 107/257 (41%), Gaps = 53/257 (20%)
Query: 405 MGKPVVFDIDMSAGDFLALIYLLKLPVELINLKGILVSSTGWATSATVDVVYDLLHMMGR 464
M P++ D D D +AL+ L P + +K I S+ T+ V +L ++ R
Sbjct: 1 MALPIIIDCDPGHDDAIALVLALASPE--LEVKAITSSAGNQTPEKTLRNVLRMLTLLKR 58
Query: 465 DDIPVGLGDVFAVGEVNPKFPPIGGCKYAKAIPLGSGGFLDSDTLYGLA-RDLPRSPRRY 523
DIPV A G V P + +D ++G + D P P
Sbjct: 59 PDIPV------AGGAVKPLM----------------RELIIADNVHGESGLDGPALP--- 93
Query: 524 TAENSVRFGASQDNDDPELRQPLAVDVWKSIVESIEPGSKITILTNGPLTNLAQIIGLQN 583
E S A Q EL K++ ES +P +TI++ GP TN+A ++
Sbjct: 94 --EPSF---APQSGTAVELMA-------KTLRESSQP---VTIVSTGPQTNVALLLNSHP 138
Query: 584 S-SSVIQDVYIVGGNKGQDNEKGNVFTVPSSKYAEFNMFLDPLAAKAVFESKLEIKLIPL 642
+ I + I+GG G N + AEFN+++DP AA+ VF+S + + + L
Sbjct: 139 ELHAKIARIVIMGGAMGLGN---------WTPAAEFNIYVDPEAAEIVFQSGIPVVMAGL 189
Query: 643 HMQRRVASFFKILHKLR 659
++ + + + R
Sbjct: 190 NVTHKAQIHAADIERFR 206
>sp|Q5PM78|RIHA_SALPA Pyrimidine-specific ribonucleoside hydrolase RihA OS=Salmonella
paratyphi A (strain ATCC 9150 / SARB42) GN=rihA PE=3
SV=1
Length = 311
Score = 58.5 bits (140), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 59/128 (46%), Gaps = 33/128 (25%)
Query: 67 AFLPQGGRKYAPLRQPTAQQVLINAI--SAGPITVFVMGSHTNFAIFLMNNPHLKKNIEH 124
+F PQ G TA +++ + S+ P+T+ G TN A+ L ++P L I
Sbjct: 96 SFAPQSG---------TAVELMAKTLRESSQPVTIVSTGPQTNVALLLNSHPELHAKIAR 146
Query: 125 IYVMGGAIRSDCFNSTNSSQSEQCDSIGNLYPDDSNPYAEFNIFSDPFAAYTVLHSGIPV 184
I +MGGA+ +GN P AEFNI+ DP AA V SGIPV
Sbjct: 147 IVIMGGAM-----------------GLGNW-----TPAAEFNIYVDPEAAEIVFQSGIPV 184
Query: 185 TIIPLDAT 192
+ L+ T
Sbjct: 185 VMAGLNVT 192
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 65/257 (25%), Positives = 107/257 (41%), Gaps = 53/257 (20%)
Query: 405 MGKPVVFDIDMSAGDFLALIYLLKLPVELINLKGILVSSTGWATSATVDVVYDLLHMMGR 464
M P++ D D D +AL+ L P + +K I S+ T+ V +L ++ R
Sbjct: 1 MALPIIIDCDPGHDDAIALVLALASPE--LEVKAITSSAGNQTPEKTLRNVLRMLTLLKR 58
Query: 465 DDIPVGLGDVFAVGEVNPKFPPIGGCKYAKAIPLGSGGFLDSDTLYGLA-RDLPRSPRRY 523
DIPV A G V P + +D ++G + D P P
Sbjct: 59 PDIPV------AGGAVKPLM----------------RELIIADNVHGESGLDGPALP--- 93
Query: 524 TAENSVRFGASQDNDDPELRQPLAVDVWKSIVESIEPGSKITILTNGPLTNLAQIIGLQN 583
E S A Q EL K++ ES +P +TI++ GP TN+A ++
Sbjct: 94 --EPSF---APQSGTAVELMA-------KTLRESSQP---VTIVSTGPQTNVALLLNSHP 138
Query: 584 S-SSVIQDVYIVGGNKGQDNEKGNVFTVPSSKYAEFNMFLDPLAAKAVFESKLEIKLIPL 642
+ I + I+GG G N + AEFN+++DP AA+ VF+S + + + L
Sbjct: 139 ELHAKIARIVIMGGAMGLGN---------WTPAAEFNIYVDPEAAEIVFQSGIPVVMAGL 189
Query: 643 HMQRRVASFFKILHKLR 659
++ + + + R
Sbjct: 190 NVTHKAQIHAADIERFR 206
>sp|Q6LQG2|RIHA_PHOPR Pyrimidine-specific ribonucleoside hydrolase RihA OS=Photobacterium
profundum GN=rihA PE=3 SV=1
Length = 310
Score = 58.5 bits (140), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 71/283 (25%), Positives = 117/283 (41%), Gaps = 68/283 (24%)
Query: 405 MGKPVVFDIDMSAGDFLALIYLLKLPVELINLKGILVSSTGWATSATVDVVYDLLHMMGR 464
M +P++ D D D +ALI P +++K + S+ T+ +L ++GR
Sbjct: 1 MSRPIIIDCDPGHDDAIALILACASPE--LDIKAVTTSAGNQTPEKTLHNALRILTLVGR 58
Query: 465 DDIPVGLGDVFAVGEVNPKFPPIGGCKYAKAIPLGSGGFLDSDTLYGLARDLPRSPRRYT 524
DIPV +GG L L+R+L
Sbjct: 59 TDIPV------------------------------AGGALQP-----LSREL------II 77
Query: 525 AENSVRFGASQDNDDPELRQPL-------AVDVWKSIV-ESIEPGSKITILTNGPLTNLA 576
A+N D P L +P AV++ I+ E+ EP +T++ GPLTN+A
Sbjct: 78 ADN---VHGETGLDGPVLPEPAFEPQPCHAVELMAKILTEATEP---VTLVPTGPLTNIA 131
Query: 577 QIIGLQNS-SSVIQDVYIVGGNKGQDNEKGNVFTVPSSKYAEFNMFLDPLAAKAVFESKL 635
++ S I + ++GG+ E GN + AEFN+++DP AA VF+S +
Sbjct: 132 LLLATHRELHSQIDSIVLMGGSA----EAGN-----WTPAAEFNIYVDPEAADIVFKSGI 182
Query: 636 EIKLIPLHMQRRVASFFKILHKLRDRKKTPESVFSQRLLQGLM 678
I + L + R + + K+R + P + + LL M
Sbjct: 183 PITMCGLDVTHRAQIMDEDIEKIR-KINNPVAQVTAELLDFFM 224
Score = 53.1 bits (126), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 75/177 (42%), Gaps = 32/177 (18%)
Query: 51 PVGQRLYVNTNY----GLRKAFLPQGGRKYAPLRQPTAQQVLINAISAG--PITVFVMGS 104
P+ + L + N GL LP+ + P A +++ ++ P+T+ G
Sbjct: 70 PLSRELIIADNVHGETGLDGPVLPEPAFEPQPCH---AVELMAKILTEATEPVTLVPTGP 126
Query: 105 HTNFAIFLMNNPHLKKNIEHIYVMGGAIRSDCFNSTNSSQSEQCDSIGNLYPDDSNPYAE 164
TN A+ L + L I+ I +MGG+ + GN P AE
Sbjct: 127 LTNIALLLATHRELHSQIDSIVLMGGSAEA-----------------GNW-----TPAAE 164
Query: 165 FNIFSDPFAAYTVLHSGIPVTIIPLDATKTIPVSENFFVEFERRQNTYEAQYCFQSL 221
FNI+ DP AA V SGIP+T+ LD T + + +E R+ N AQ + L
Sbjct: 165 FNIYVDPEAADIVFKSGIPITMCGLDVTHRAQIMDE-DIEKIRKINNPVAQVTAELL 220
>sp|A0L0Y0|RIHA_SHESA Pyrimidine-specific ribonucleoside hydrolase RihA OS=Shewanella sp.
(strain ANA-3) GN=rihA PE=3 SV=1
Length = 318
Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 66/155 (42%), Gaps = 45/155 (29%)
Query: 51 PVGQRLYVNTNY----GLRKAFLPQGGRKYAPLRQPTAQQVLINAI---------SAGPI 97
P+ + L + N GL LP AP QP A +NA+ S P+
Sbjct: 70 PLSRELMIADNVHGETGLDGPALP------APSFQPQA----VNAVELMAEKIRQSDKPV 119
Query: 98 TVFVMGSHTNFAIFLMNNPHLKKNIEHIYVMGGAIRSDCFNSTNSSQSEQCDSIGNLYPD 157
T+ G TN A+ L ++ L IE I +MGGA +GN
Sbjct: 120 TLVPTGPLTNIALLLASHAELHAKIERIVLMGGAA-----------------GVGNW--- 159
Query: 158 DSNPYAEFNIFSDPFAAYTVLHSGIPVTIIPLDAT 192
P AEFNIF DP AA V SGIP+T+ LD T
Sbjct: 160 --TPAAEFNIFVDPEAADIVFKSGIPITMCGLDVT 192
Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 66/258 (25%), Positives = 107/258 (41%), Gaps = 55/258 (21%)
Query: 405 MGKPVVFDIDMSAGDFLALIYLLKLPVELINLKGILVSSTGWATSATVDVVYDLLHMMGR 464
M +P++ D D D +ALI L P EL L + S+ T++ +L ++ R
Sbjct: 1 MSRPIILDCDPGHDDAIALILALAHP-ELTPL-AVTTSAGNQTPDKTLNNALRILTLLNR 58
Query: 465 DDIPVGLGDVFAVGEVNPKFPPIGGCKYAKAIPLGSGGFLDSDTLYG-LARDLPRSPRRY 523
DIPV A G V P S + +D ++G D P P
Sbjct: 59 SDIPV------AGGAVKPL----------------SRELMIADNVHGETGLDGPALPA-- 94
Query: 524 TAENSVRFGASQDNDDPELRQPLAVDVWKSIVESIEPGSK-ITILTNGPLTNLAQIIGLQ 582
P QP AV+ + + E I K +T++ GPLTN+A ++
Sbjct: 95 ----------------PSF-QPQAVNAVELMAEKIRQSDKPVTLVPTGPLTNIALLLASH 137
Query: 583 NS-SSVIQDVYIVGGNKGQDNEKGNVFTVPSSKYAEFNMFLDPLAAKAVFESKLEIKLIP 641
+ I+ + ++GG G N + AEFN+F+DP AA VF+S + I +
Sbjct: 138 AELHAKIERIVLMGGAAGVGN---------WTPAAEFNIFVDPEAADIVFKSGIPITMCG 188
Query: 642 LHMQRRVASFFKILHKLR 659
L + + + + ++R
Sbjct: 189 LDVTHQAQIMDEDIERIR 206
>sp|A3D0C6|RIHA_SHEB5 Pyrimidine-specific ribonucleoside hydrolase RihA OS=Shewanella
baltica (strain OS155 / ATCC BAA-1091) GN=rihA PE=3 SV=1
Length = 318
Score = 57.8 bits (138), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 68/148 (45%), Gaps = 31/148 (20%)
Query: 51 PVGQRLYVNTNY----GLRKAFLPQGGRKYAPLRQPTAQQVLINAI--SAGPITVFVMGS 104
P+ + L + N GL LP+ ++P + TA +++ I S P+T+ G
Sbjct: 70 PLTRELIIADNVHGETGLDGPALPE--PSFSP-QAITAVELMAQQIRQSTQPVTLVPTGP 126
Query: 105 HTNFAIFLMNNPHLKKNIEHIYVMGGAIRSDCFNSTNSSQSEQCDSIGNLYPDDSNPYAE 164
TN A+ L ++ L IE I +MGGA +GN P AE
Sbjct: 127 LTNIALLLASHSELHPKIERIVLMGGAA-----------------GVGNW-----TPAAE 164
Query: 165 FNIFSDPFAAYTVLHSGIPVTIIPLDAT 192
FNIF DP AA V SGIP+T+ LD T
Sbjct: 165 FNIFVDPEAADIVFKSGIPITMCGLDVT 192
Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 64/258 (24%), Positives = 105/258 (40%), Gaps = 55/258 (21%)
Query: 405 MGKPVVFDIDMSAGDFLALIYLLKLPVELINLKGILVSSTGWATSATVDVVYDLLHMMGR 464
M + ++ D D D +ALI L P +L+ L + S+ T++ +L ++ R
Sbjct: 1 MTRHIILDCDPGHDDAIALILALAHP-DLVPL-AVTTSAGNQTPDKTLNNALRILTLLNR 58
Query: 465 DDIPVGLGDVFAVGEVNPKFPPIGGCKYAKAIPLGSGGFLDSDT-LYGLARDLPR-SPRR 522
DIPV GG L + +T L G A P SP+
Sbjct: 59 GDIPVA-----------------GGATKPLTRELIIADNVHGETGLDGPALPEPSFSPQA 101
Query: 523 YTAENSVRFGASQDNDDPELRQPLAVDVWKSIVESIEPGSKITILTNGPLTNLAQIIGLQ 582
TA V A Q I +S +P +T++ GPLTN+A ++
Sbjct: 102 ITA---VELMAQQ------------------IRQSTQP---VTLVPTGPLTNIALLLASH 137
Query: 583 NS-SSVIQDVYIVGGNKGQDNEKGNVFTVPSSKYAEFNMFLDPLAAKAVFESKLEIKLIP 641
+ I+ + ++GG G N + AEFN+F+DP AA VF+S + I +
Sbjct: 138 SELHPKIERIVLMGGAAGVGN---------WTPAAEFNIFVDPEAADIVFKSGIPITMCG 188
Query: 642 LHMQRRVASFFKILHKLR 659
L + + + + ++R
Sbjct: 189 LDVTHQAQIMDEDIERIR 206
>sp|A6WSI3|RIHA_SHEB8 Pyrimidine-specific ribonucleoside hydrolase RihA OS=Shewanella
baltica (strain OS185) GN=rihA PE=3 SV=1
Length = 318
Score = 57.8 bits (138), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 68/148 (45%), Gaps = 31/148 (20%)
Query: 51 PVGQRLYVNTNY----GLRKAFLPQGGRKYAPLRQPTAQQVLINAI--SAGPITVFVMGS 104
P+ + L + N GL LP+ ++P + TA +++ I S P+T+ G
Sbjct: 70 PLTRELIIADNVHGETGLDGPALPE--PSFSP-QAITAVELMAQQIRQSTQPVTLVPTGP 126
Query: 105 HTNFAIFLMNNPHLKKNIEHIYVMGGAIRSDCFNSTNSSQSEQCDSIGNLYPDDSNPYAE 164
TN A+ L ++ L IE I +MGGA +GN P AE
Sbjct: 127 LTNIALLLASHSELHPKIERIVLMGGAA-----------------GVGNW-----TPAAE 164
Query: 165 FNIFSDPFAAYTVLHSGIPVTIIPLDAT 192
FNIF DP AA V SGIP+T+ LD T
Sbjct: 165 FNIFVDPEAADIVFKSGIPITMCGLDVT 192
Score = 44.7 bits (104), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 56/109 (51%), Gaps = 13/109 (11%)
Query: 552 KSIVESIEPGSKITILTNGPLTNLAQIIGLQNS-SSVIQDVYIVGGNKGQDNEKGNVFTV 610
+ I +S +P +T++ GPLTN+A ++ + I+ + ++GG G N
Sbjct: 110 QQIRQSTQP---VTLVPTGPLTNIALLLASHSELHPKIERIVLMGGAAGVGN-------- 158
Query: 611 PSSKYAEFNMFLDPLAAKAVFESKLEIKLIPLHMQRRVASFFKILHKLR 659
+ AEFN+F+DP AA VF+S + I + L + + + + ++R
Sbjct: 159 -WTPAAEFNIFVDPEAADIVFKSGIPITMCGLDVTHQAQIMDEDIERIR 206
>sp|B5Y231|RIHC_KLEP3 Non-specific ribonucleoside hydrolase RihC OS=Klebsiella pneumoniae
(strain 342) GN=rihC PE=3 SV=1
Length = 304
Score = 57.4 bits (137), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 70/135 (51%), Gaps = 16/135 (11%)
Query: 543 RQPLAVDVWKSIVESIEPGSK-ITILTNGPLTNLAQIIGLQNSSSV--IQDVYIVGGNKG 599
RQPLA +++I +++ ++ IT++ GPLTN+A ++ Q V I+ + I+GG+ G
Sbjct: 96 RQPLAKPAFQAIRDALMHAAEPITLVAIGPLTNIALLLT-QYPECVFNIRRLVIMGGSAG 154
Query: 600 QDNEKGNVFTVPSSKYAEFNMFLDPLAAKAVFESKLEIKLIPLHMQRR---VASFFKILH 656
+ N N AEFN+ +DP AA VF S LEI + L + R A + L
Sbjct: 155 RGNFTPN---------AEFNIAIDPEAAAKVFHSGLEIVMCGLDVTNRALLAADYLATLP 205
Query: 657 KLRDRKKTPESVFSQ 671
L K ++FS
Sbjct: 206 TLNQTGKMLHALFSH 220
Score = 54.7 bits (130), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 60/137 (43%), Gaps = 27/137 (19%)
Query: 80 RQPTAQ---QVLINAI--SAGPITVFVMGSHTNFAIFLMNNPHLKKNIEHIYVMGGAIRS 134
RQP A+ Q + +A+ +A PIT+ +G TN A+ L P NI + +MGG+
Sbjct: 96 RQPLAKPAFQAIRDALMHAAEPITLVAIGPLTNIALLLTQYPECVFNIRRLVIMGGSAGR 155
Query: 135 DCFNSTNSSQSEQCDSIGNLYPDDSNPYAEFNIFSDPFAAYTVLHSGIPVTIIPLDATKT 194
GN P+ AEFNI DP AA V HSG+ + + LD T
Sbjct: 156 -----------------GNFTPN-----AEFNIAIDPEAAAKVFHSGLEIVMCGLDVTNR 193
Query: 195 IPVSENFFVEFERRQNT 211
++ ++ T
Sbjct: 194 ALLAADYLATLPTLNQT 210
>sp|B4SYM0|RIHA_SALNS Pyrimidine-specific ribonucleoside hydrolase RihA OS=Salmonella
newport (strain SL254) GN=rihA PE=3 SV=1
Length = 311
Score = 57.4 bits (137), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 63/137 (45%), Gaps = 27/137 (19%)
Query: 58 VNTNYGLRKAFLPQGGRKYAPLRQPTAQQVLINAI--SAGPITVFVMGSHTNFAIFLMNN 115
V+ GL LP+ +APL TA +++ + S P+T+ G TN A+ L ++
Sbjct: 81 VHGESGLDGPALPEPA--FAPL-DCTAVELMAKVLRESPEPVTIVSTGPQTNVALLLNSH 137
Query: 116 PHLKKNIEHIYVMGGAIRSDCFNSTNSSQSEQCDSIGNLYPDDSNPYAEFNIFSDPFAAY 175
P L I I +MGGA+ +GN P AEFNI+ DP AA
Sbjct: 138 PELHAKIARIVIMGGAM-----------------GLGNW-----TPAAEFNIYVDPEAAE 175
Query: 176 TVLHSGIPVTIIPLDAT 192
V SGI V + LD T
Sbjct: 176 IVFQSGIRVVMAGLDVT 192
Score = 47.8 bits (112), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 64/252 (25%), Positives = 103/252 (40%), Gaps = 67/252 (26%)
Query: 405 MGKPVVFDIDMSAGDFLALIYLLKLPVELINLKGILVSSTGWATSATVDVVYDLLHMMGR 464
M P++FD D D +A++ L P +++K I S+ T+ V +L ++ R
Sbjct: 1 MALPILFDCDPGHDDAIAIVLALASPE--LDVKAITSSAGNQTPDKTLRNVLRMLTLLNR 58
Query: 465 DDIPVGLGDVFAVGEVNPKFPPIGGCKYAKAIPLGSGGFLDSDTLYGLARDLPRSPRRYT 524
DI V A G V P L RDL
Sbjct: 59 TDISV------AGGAVKP-----------------------------LMRDL------II 77
Query: 525 AENSVRFGASQDNDDPELRQP-------LAVDVWKSIV-ESIEPGSKITILTNGPLTNLA 576
A+N D P L +P AV++ ++ ES EP +TI++ GP TN+A
Sbjct: 78 ADN---VHGESGLDGPALPEPAFAPLDCTAVELMAKVLRESPEP---VTIVSTGPQTNVA 131
Query: 577 QIIGLQNS-SSVIQDVYIVGGNKGQDNEKGNVFTVPSSKYAEFNMFLDPLAAKAVFESKL 635
++ + I + I+GG G N + AEFN+++DP AA+ VF+S +
Sbjct: 132 LLLNSHPELHAKIARIVIMGGAMGLGN---------WTPAAEFNIYVDPEAAEIVFQSGI 182
Query: 636 EIKLIPLHMQRR 647
+ + L + +
Sbjct: 183 RVVMAGLDVTHK 194
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.137 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 312,447,325
Number of Sequences: 539616
Number of extensions: 13932491
Number of successful extensions: 30304
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 29715
Number of HSP's gapped (non-prelim): 364
length of query: 795
length of database: 191,569,459
effective HSP length: 126
effective length of query: 669
effective length of database: 123,577,843
effective search space: 82673576967
effective search space used: 82673576967
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (29.6 bits)