Query 003794
Match_columns 795
No_of_seqs 374 out of 2681
Neff 6.4
Searched_HMMs 46136
Date Thu Mar 28 12:09:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003794.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003794hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1957 URH1 Inosine-uridine n 100.0 1.4E-61 3E-66 516.8 29.7 304 405-764 1-310 (311)
2 PRK09955 rihB ribonucleoside h 100.0 7.7E-60 1.7E-64 511.8 30.7 301 406-764 3-309 (313)
3 PLN02717 uridine nucleosidase 100.0 4.4E-59 9.6E-64 507.3 31.4 301 407-762 1-314 (316)
4 PRK10443 rihA ribonucleoside h 100.0 3.1E-58 6.8E-63 499.6 31.9 302 406-763 2-309 (311)
5 PRK10768 ribonucleoside hydrol 100.0 6E-58 1.3E-62 496.3 30.7 296 406-764 2-303 (304)
6 cd02651 nuc_hydro_IU_UC_XIUA n 100.0 4.8E-58 1E-62 497.1 29.6 296 408-761 1-302 (302)
7 cd02653 nuc_hydro_3 NH_3: A su 100.0 2.6E-57 5.7E-62 493.9 29.5 301 408-766 1-311 (320)
8 cd02649 nuc_hydro_CeIAG nuc_hy 100.0 8E-57 1.7E-61 487.1 29.3 297 407-757 1-305 (306)
9 cd02650 nuc_hydro_CaPnhB NH_hy 100.0 3.4E-56 7.3E-61 483.1 29.4 295 408-758 1-304 (304)
10 PTZ00313 inosine-adenosine-gua 100.0 8.9E-56 1.9E-60 483.1 31.0 317 406-762 2-324 (326)
11 PF01156 IU_nuc_hydro: Inosine 100.0 3.1E-56 6.6E-61 485.0 18.9 304 406-763 1-311 (312)
12 cd02654 nuc_hydro_CjNH nuc_hyd 100.0 5.9E-54 1.3E-58 467.5 27.8 303 408-757 1-318 (318)
13 cd02647 nuc_hydro_TvIAG nuc_hy 100.0 1.7E-53 3.7E-58 461.7 26.5 292 407-752 1-302 (312)
14 cd00455 nuc_hydro nuc_hydro: N 100.0 5.9E-53 1.3E-57 455.8 28.6 290 409-757 1-295 (295)
15 cd02648 nuc_hydro_1 NH_1: A su 100.0 5.9E-51 1.3E-55 443.3 27.5 290 406-737 1-348 (367)
16 COG1957 URH1 Inosine-uridine n 100.0 3E-48 6.5E-53 414.4 20.3 217 2-286 56-275 (311)
17 PRK09955 rihB ribonucleoside h 100.0 2.2E-45 4.7E-50 398.9 21.6 215 2-286 57-274 (313)
18 PLN02717 uridine nucleosidase 100.0 3.4E-45 7.3E-50 398.5 22.0 220 1-286 53-274 (316)
19 PRK10443 rihA ribonucleoside h 100.0 1.2E-44 2.5E-49 393.4 23.4 218 1-286 55-275 (311)
20 PRK10768 ribonucleoside hydrol 100.0 4.8E-44 1E-48 387.8 22.9 211 1-286 55-268 (304)
21 cd02651 nuc_hydro_IU_UC_XIUA n 100.0 3.4E-44 7.3E-49 389.0 21.1 216 1-286 52-270 (302)
22 cd02650 nuc_hydro_CaPnhB NH_hy 100.0 1.1E-43 2.4E-48 385.3 21.3 219 1-286 52-272 (304)
23 cd02653 nuc_hydro_3 NH_3: A su 100.0 1.7E-43 3.7E-48 385.6 20.9 218 1-286 52-274 (320)
24 cd02649 nuc_hydro_CeIAG nuc_hy 100.0 2.9E-43 6.4E-48 381.3 21.9 219 1-286 53-277 (306)
25 PTZ00313 inosine-adenosine-gua 100.0 1.7E-42 3.6E-47 378.7 24.1 229 1-286 56-295 (326)
26 cd02654 nuc_hydro_CjNH nuc_hyd 100.0 2.8E-42 6E-47 375.9 20.4 221 1-286 56-287 (318)
27 cd02647 nuc_hydro_TvIAG nuc_hy 100.0 5.6E-41 1.2E-45 364.1 20.6 218 1-286 55-284 (312)
28 KOG2938 Predicted inosine-urid 100.0 7.2E-41 1.6E-45 362.0 19.6 305 406-764 21-335 (350)
29 cd00455 nuc_hydro nuc_hydro: N 100.0 1.8E-40 4E-45 358.5 22.1 216 1-286 51-268 (295)
30 PF01156 IU_nuc_hydro: Inosine 100.0 3.5E-41 7.6E-46 366.9 7.6 218 2-286 55-278 (312)
31 cd02648 nuc_hydro_1 NH_1: A su 100.0 2.1E-39 4.6E-44 353.0 20.8 226 6-286 78-344 (367)
32 cd02652 nuc_hydro_2 NH_2: A su 100.0 1.3E-34 2.7E-39 310.3 18.1 226 409-707 1-243 (293)
33 KOG2938 Predicted inosine-urid 100.0 3.1E-29 6.6E-34 271.7 16.1 216 1-285 74-298 (350)
34 cd02652 nuc_hydro_2 NH_2: A su 99.9 2.2E-26 4.7E-31 246.9 15.3 154 80-279 91-265 (293)
35 PF07632 DUF1593: Protein of u 95.6 0.016 3.5E-07 61.6 5.3 144 408-596 1-158 (260)
36 PF10609 ParA: ParA/MinD ATPas 53.7 21 0.00046 31.7 4.3 59 408-477 3-63 (81)
37 PRK09802 DNA-binding transcrip 48.6 56 0.0012 35.3 7.6 60 562-644 129-189 (269)
38 PF00455 DeoRC: DeoR C termina 42.0 68 0.0015 31.8 6.4 60 562-644 42-102 (161)
39 PRK13509 transcriptional repre 33.4 1.3E+02 0.0028 32.1 7.3 58 563-644 116-174 (251)
40 PF07632 DUF1593: Protein of u 33.3 46 0.001 35.9 3.8 48 82-130 99-158 (260)
41 PRK13509 transcriptional repre 30.4 1.9E+02 0.0041 30.9 8.0 46 82-134 102-147 (251)
42 PRK10681 DNA-binding transcrip 28.7 2E+02 0.0043 30.7 7.8 59 562-643 115-174 (252)
43 PRK09802 DNA-binding transcrip 27.8 2.1E+02 0.0046 30.8 7.9 73 82-190 115-188 (269)
44 PF03054 tRNA_Me_trans: tRNA m 25.4 2.2E+02 0.0048 32.3 7.7 59 407-471 1-67 (356)
45 PF14097 SpoVAE: Stage V sporu 24.0 99 0.0021 31.3 4.0 54 390-446 38-96 (180)
46 PRK10411 DNA-binding transcrip 23.7 2.8E+02 0.006 29.5 7.7 59 563-644 116-175 (240)
47 PRK10906 DNA-binding transcrip 23.2 2.9E+02 0.0062 29.6 7.8 59 562-643 114-173 (252)
48 KOG3953 SOCS box protein SSB-1 22.4 1.5E+02 0.0032 31.5 5.1 63 344-417 87-157 (242)
49 PF00455 DeoRC: DeoR C termina 20.0 3.3E+02 0.0072 26.9 7.0 73 82-190 28-101 (161)
50 PRK10128 2-keto-3-deoxy-L-rham 20.0 82 0.0018 34.2 2.8 104 542-665 152-261 (267)
No 1
>COG1957 URH1 Inosine-uridine nucleoside N-ribohydrolase [Nucleotide transport and metabolism]
Probab=100.00 E-value=1.4e-61 Score=516.79 Aligned_cols=304 Identities=27% Similarity=0.366 Sum_probs=269.3
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHhCCCCceeEEEEE-EeCCCCchhHhHHHHHHHHHHhCCCCCcEeecccccccCCCCC
Q 003794 405 MGKPVVFDIDMSAGDFLALIYLLKLPVELINLKGIL-VSSTGWATSATVDVVYDLLHMMGRDDIPVGLGDVFAVGEVNPK 483 (795)
Q Consensus 405 ~~kkVIiDtD~g~DDalAL~~lL~~p~~~idl~gIt-v~Gn~~~~~a~~~~a~~iL~~~Gr~dIPV~~Ga~~pl~~~~~~ 483 (795)
+++|||||||+|.||++||+|||.+| +++|+||| |.||...++. .+|++.+|+.+||.+||||+|+.+||.++.
T Consensus 1 ~~~kiiiD~DpG~DDaiAlllal~~p--~i~l~giTtv~GNv~le~t-~~Na~~~l~~~g~~~iPV~~Ga~~Pl~r~~-- 75 (311)
T COG1957 1 MMRKIIIDCDPGHDDAIALLLALASP--EIDLLGITTVAGNVPLEQT-TRNALSVLELLGRADIPVYAGAARPLLREP-- 75 (311)
T ss_pred CCceEEEeCCCChhHHHHHHHHhcCC--CceEEEEEEecCcccHhHH-HHHHHHHHHHcCCCCCCeecCCCCCcCCCC--
Confidence 35799999999999999999999999 89999999 8999998874 579999999999999999999999997753
Q ss_pred CCCCCCCCcccccccCCCCCCCccccccccCCCCCCccccccccccccCCCCCCCCCccCchhHHHHHHHHHHhcCCCCc
Q 003794 484 FPPIGGCKYAKAIPLGSGGFLDSDTLYGLARDLPRSPRRYTAENSVRFGASQDNDDPELRQPLAVDVWKSIVESIEPGSK 563 (795)
Q Consensus 484 ~p~~~~~~~~~~~~hG~dGlgd~~~~~g~~~~lP~~~~~~~~~~~~~~~~p~~~d~~~~~~~~A~~~~~~i~~~~~~~~~ 563 (795)
.++ +..||.+|+++. .+|++... +...+|+++|++.+++ ++ ++
T Consensus 76 -------~~a-~~iHG~~Gl~~~--------~lp~~~~~-------------------~~~~~A~~~ii~~l~~-~~-g~ 118 (311)
T COG1957 76 -------ITA-PEIHGESGLGGP--------ELPEPTRK-------------------LESKHAVDAIIDTLMA-NP-GE 118 (311)
T ss_pred -------cch-hhhcCCcCCCCC--------CCCccccc-------------------ccCCcHHHHHHHHHHh-CC-Cc
Confidence 233 457999999875 46664222 2237899999999986 45 79
Q ss_pred EEEEEecchhHHHHHH-hCCCcccccCeEEEecCCCCCCCCCCCccccCCCCcccCCCCCCHHHHHHHHhcCCceEEecc
Q 003794 564 ITILTNGPLTNLAQII-GLQNSSSVIQDVYIVGGNKGQDNEKGNVFTVPSSKYAEFNMFLDPLAAKAVFESKLEIKLIPL 642 (795)
Q Consensus 564 VtIla~GPLTNLA~al-~~P~i~~~I~~vviMGG~~~~~~~~GNv~~~~~~~~aEfN~~~DP~AA~iV~~s~~~itlipl 642 (795)
|||+++|||||||.|+ ++|++.++||+|+||||++ ..+||++ +.||||+|.|||||++||+|+++++|+||
T Consensus 119 vtlva~GPLTNiAlAl~~~P~i~~~ik~iviMGGa~---~~~GNvt-----p~AEfNi~~DPeAA~iVf~sg~~i~mv~L 190 (311)
T COG1957 119 VTLVATGPLTNIALALRKDPEIAKRIKEIVIMGGAF---FVPGNVT-----PAAEFNIWVDPEAAKIVFTSGWPITMVPL 190 (311)
T ss_pred EEEEecCChHHHHHHHHhCcchhhhhcEEEEecCcc---CCCCCcC-----cchhhhhccCHHHHHHHHhCCCceEEech
Confidence 9999999999999999 9999999999999999999 5789998 58999999999999999999999999999
Q ss_pred ccchhccccHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhcccccccCccccceeeeeeeccCCccceeeEEEEEEEee
Q 003794 643 HMQRRVASFFKILHKLRDRKKTPESVFSQRLLQGLMTLQQSHHSYHHVDTFLGEVLGAVILGGNPHLNQTYKIKSLEIIS 722 (795)
Q Consensus 643 dvt~~~~~~~~~l~~l~~~~~tp~a~fl~~ll~~~~~~~~~~~~~~~~~~~l~D~Laaa~l~~p~~l~~~~~~~~v~Ve~ 722 (795)
|+|+|+..+++.++++++.+ ++.++|+.+++++|.++.++.. .-.+.++||++|++|+++| +++ +.+..+|+|++
T Consensus 191 dvT~q~~~t~~~~~~~~~~~-~~~~~~~~d~l~~~~~~~~~~~--g~~g~~~hD~~a~a~l~~p-~l~-~~~~~~V~Ve~ 265 (311)
T COG1957 191 DVTHQVLLTPDVLARLRAAG-GPAAELVADLLDFYLAYYKSRQ--GLDGAPLHDPLAVAYLLDP-ELF-TTREANVDVET 265 (311)
T ss_pred hhhhhhcCCHHHHHHHHHhC-CccHHHHHHHHHHHHHHHhhcc--CCCCCCcccHHHHHHHhCh-hhh-cceEEEEEEEe
Confidence 99999999999999999877 6888999999999998887543 2346799999999999999 576 67889999999
Q ss_pred cCCcccceeEEEecC----CCcceEEEeecCHHHHHHHHHHHHhcc
Q 003794 723 DGDISKVGQIIVNQE----QGKLVKVLESLNVAVYYDHFAEVLGDH 764 (795)
Q Consensus 723 ~g~~~t~G~tv~d~~----~~~~v~v~~~vD~~~f~~~l~~~L~~~ 764 (795)
++. +++|+|++|+. ..+|++|+.++|.++|++++.++|.+.
T Consensus 266 ~~~-lt~G~Tv~d~~~~~~~~~n~~v~~~vD~~~f~~~i~~~l~~~ 310 (311)
T COG1957 266 AGG-LTRGMTVVDWRGVLGKPPNAQVAVDVDVEGFLDLILEALARL 310 (311)
T ss_pred CCC-CcCcceEEEecccCCCCCCeEEeeccCHHHHHHHHHHHHhcc
Confidence 986 89999999986 357999999999999999999999764
No 2
>PRK09955 rihB ribonucleoside hydrolase 2; Provisional
Probab=100.00 E-value=7.7e-60 Score=511.78 Aligned_cols=301 Identities=18% Similarity=0.228 Sum_probs=260.1
Q ss_pred CCcEEEEcCCCchHHHHHHHHHhCCCCceeEEEEE-EeCCCCchhHhHHHHHHHHHHhCCCCCcEeecccccccCCCCCC
Q 003794 406 GKPVVFDIDMSAGDFLALIYLLKLPVELINLKGIL-VSSTGWATSATVDVVYDLLHMMGRDDIPVGLGDVFAVGEVNPKF 484 (795)
Q Consensus 406 ~kkVIiDtD~g~DDalAL~~lL~~p~~~idl~gIt-v~Gn~~~~~a~~~~a~~iL~~~Gr~dIPV~~Ga~~pl~~~~~~~ 484 (795)
++|||||||+|+||++||+|||.+| ++||+||| |+||++..++ .+|+.++|+.+|+ +|||+.|+..||..+.
T Consensus 3 ~~kvIiDtD~G~DDa~Al~~al~~p--~~ev~gIttv~GN~~~~~~-~~Nal~~l~~~g~-~IPV~~Ga~~PL~~~~--- 75 (313)
T PRK09955 3 KRKIILDCDPGHDDAIAMMMAAKHP--AIDLLGITIVAGNQTLDKT-LINGLNVCQKLEI-NVPVYAGMPQPIMRQQ--- 75 (313)
T ss_pred CceEEEECCCChHHHHHHHHHhcCC--CcEEEEEEecCCCcCHHHH-HHHHHHHHHHhCC-CCCEEeCCCCCCCCCC---
Confidence 4699999999999999999999999 89999999 7899998874 5799999999998 7999999999996642
Q ss_pred CCCCCCCcccccccCCCCCCCccccccccCCCCCCccccccccccccCCCCCCCCCccCchhHHHHHHHHHHhcCCCCcE
Q 003794 485 PPIGGCKYAKAIPLGSGGFLDSDTLYGLARDLPRSPRRYTAENSVRFGASQDNDDPELRQPLAVDVWKSIVESIEPGSKI 564 (795)
Q Consensus 485 p~~~~~~~~~~~~hG~dGlgd~~~~~g~~~~lP~~~~~~~~~~~~~~~~p~~~d~~~~~~~~A~~~~~~i~~~~~~~~~V 564 (795)
.+ ....||.+|||+. .+|++.. .....+|+++|.+++++ ++++|
T Consensus 76 ------~~-~~~~HG~~Glg~~--------~~~~~~~-------------------~~~~~~A~~~i~~~~~~--~p~ei 119 (313)
T PRK09955 76 ------IV-ADNIHGETGLDGP--------VFEPLTR-------------------QAESTHAVKYIIDTLMA--SDGDI 119 (313)
T ss_pred ------CC-ccccCCCCCCCCC--------CCCCccc-------------------ccCCCcHHHHHHHHHHh--CCCCE
Confidence 12 2347999999886 3554311 12345799999999986 44689
Q ss_pred EEEEecchhHHHHHH-hCCCcccccCeEEEecCCCCCCCCCCCccccCCCCcccCCCCCCHHHHHHHHhcCCceEEeccc
Q 003794 565 TILTNGPLTNLAQII-GLQNSSSVIQDVYIVGGNKGQDNEKGNVFTVPSSKYAEFNMFLDPLAAKAVFESKLEIKLIPLH 643 (795)
Q Consensus 565 tIla~GPLTNLA~al-~~P~i~~~I~~vviMGG~~~~~~~~GNv~~~~~~~~aEfN~~~DP~AA~iV~~s~~~itlipld 643 (795)
|||++|||||||.|+ ++|++.++|++||+|||++. .||++ +.||||+|.|||||++||+|++|++++|||
T Consensus 120 tiva~GPLTNlA~al~~~P~~~~~i~~iviMGG~~~----~GN~t-----p~aEfN~~~DPeAA~iV~~s~~~i~~v~lD 190 (313)
T PRK09955 120 TLVPVGPLSNIAVAMRMQPAILPKIREIVLMGGAYG----TGNFT-----PSAEFNIFADPEAARVVFTSGVPLVMMGLD 190 (313)
T ss_pred EEEEcCcHHHHHHHHHHChHHHHhCCEEEEeCCCCC----CCCCC-----CCeeeccccCHHHHHHHHhCCCCEEEeccc
Confidence 999999999999999 99999999999999999982 59987 589999999999999999999999999999
Q ss_pred cchhccccHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhcccccccCccccceeeeeeeccCCccceeeEEEEEEEeec
Q 003794 644 MQRRVASFFKILHKLRDRKKTPESVFSQRLLQGLMTLQQSHHSYHHVDTFLGEVLGAVILGGNPHLNQTYKIKSLEIISD 723 (795)
Q Consensus 644 vt~~~~~~~~~l~~l~~~~~tp~a~fl~~ll~~~~~~~~~~~~~~~~~~~l~D~Laaa~l~~p~~l~~~~~~~~v~Ve~~ 723 (795)
+|+++.++++++++|+..+ ++.++|+.+++++|.+++... +...++.+||++|++++++| +++ +++..+++|+++
T Consensus 191 vT~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~--~g~~g~~lhD~la~a~~~~P-~l~-~~~~~~v~Ve~~ 265 (313)
T PRK09955 191 LTNQTVCTPDVIARMERAG-GPAGELFSDIMNFTLKTQFEN--YGLAGGPVHDATCIGYLINP-DGI-KTQEMYVEVDVN 265 (313)
T ss_pred cccceecCHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHHhh--cCCCCCccChHHHHHHHcCh-hhE-EEEEeeEEEEeC
Confidence 9999999999999998765 789999999999887765432 22346789999999999999 576 577889999998
Q ss_pred CCcccceeEEEecCC----CcceEEEeecCHHHHHHHHHHHHhcc
Q 003794 724 GDISKVGQIIVNQEQ----GKLVKVLESLNVAVYYDHFAEVLGDH 764 (795)
Q Consensus 724 g~~~t~G~tv~d~~~----~~~v~v~~~vD~~~f~~~l~~~L~~~ 764 (795)
+. .++|+|++|+.. .+|++|+.++|.++|+++|+++|..+
T Consensus 266 g~-~t~G~tv~d~~~~~~~~~n~~v~~~vD~~~f~~~~~~~l~~~ 309 (313)
T PRK09955 266 SG-PCYGRTVCDELGVLGKPANTKVGITIDTDWFWGLVEECVRGY 309 (313)
T ss_pred CC-CCCceEEecccccCCCCCCCEEeeecCHHHHHHHHHHHHHHH
Confidence 75 799999999643 46899999999999999999999765
No 3
>PLN02717 uridine nucleosidase
Probab=100.00 E-value=4.4e-59 Score=507.27 Aligned_cols=301 Identities=24% Similarity=0.278 Sum_probs=259.1
Q ss_pred CcEEEEcCCCchHHHHHHHHHhCCCCceeEEEEE-EeCCCCchhHhHHHHHHHHHHhCCCCCcEeecccccccCCCCCCC
Q 003794 407 KPVVFDIDMSAGDFLALIYLLKLPVELINLKGIL-VSSTGWATSATVDVVYDLLHMMGRDDIPVGLGDVFAVGEVNPKFP 485 (795)
Q Consensus 407 kkVIiDtD~g~DDalAL~~lL~~p~~~idl~gIt-v~Gn~~~~~a~~~~a~~iL~~~Gr~dIPV~~Ga~~pl~~~~~~~p 485 (795)
||||||||+|+||++||+|||.+| +++|+||| |+||++.+++ .+|++++|+++|+.||||++|+..||..+..
T Consensus 1 ~~vIiDtD~GiDDa~Al~~al~~~--~~~l~gIt~v~GN~~~~~~-~~na~~ll~~~g~~diPV~~Ga~~pl~~~~~--- 74 (316)
T PLN02717 1 KKLIIDTDPGIDDAMAILMALRSP--EVEVIGLTTIFGNVTTKLA-TRNALHLLEMAGRPDVPVAEGSHEPLKGGTK--- 74 (316)
T ss_pred CcEEEECCCChHHHHHHHHHhcCC--CceEEEEEEccCCcCHHHH-HHHHHHHHHHcCCCCCCEEeCCCCCCCCCCC---
Confidence 589999999999999999999999 89999999 7899988774 6799999999999999999999999976411
Q ss_pred CCCCCCcccccccCCCCCCCccccccccCCCCCCccccccccccccCCCCCCCCCccCchhHHHHHHHHHHhcCCCCcEE
Q 003794 486 PIGGCKYAKAIPLGSGGFLDSDTLYGLARDLPRSPRRYTAENSVRFGASQDNDDPELRQPLAVDVWKSIVESIEPGSKIT 565 (795)
Q Consensus 486 ~~~~~~~~~~~~hG~dGlgd~~~~~g~~~~lP~~~~~~~~~~~~~~~~p~~~d~~~~~~~~A~~~~~~i~~~~~~~~~Vt 565 (795)
. .+ ...+||.+|||+. .+|++.. .....+|+++|++++++ ++ ++||
T Consensus 75 -~---~~-~~~~hG~dGlg~~--------~~p~~~~-------------------~~~~~~A~~~i~~~~~~-~~-~~it 120 (316)
T PLN02717 75 -P---RI-ADFVHGSDGLGNT--------NLPPPKG-------------------KKIEKSAAEFLVEKVSE-YP-GEVT 120 (316)
T ss_pred -C---cC-CccCCCCCCCCCC--------CCCCCCC-------------------CcCCCCHHHHHHHHHHh-CC-CCEE
Confidence 0 12 2357999999986 3554311 12346799999999886 44 6899
Q ss_pred EEEecchhHHHHHH-hCCCcccccCeEEEecCCCCCCCCCCCccccCCCCcccCCCCCCHHHHHHHHhcCCceEEecccc
Q 003794 566 ILTNGPLTNLAQII-GLQNSSSVIQDVYIVGGNKGQDNEKGNVFTVPSSKYAEFNMFLDPLAAKAVFESKLEIKLIPLHM 644 (795)
Q Consensus 566 Ila~GPLTNLA~al-~~P~i~~~I~~vviMGG~~~~~~~~GNv~~~~~~~~aEfN~~~DP~AA~iV~~s~~~itlipldv 644 (795)
||++|||||||+|+ ++|++.++|++||+|||++ ..+||++ +.||||||+||+||++||+|+++++|+|||+
T Consensus 121 iva~GPLTNlA~al~~~P~~~~~ik~iviMGG~~---~~~GN~t-----p~aEfN~~~DPeAA~iVl~s~~~i~~v~ldv 192 (316)
T PLN02717 121 VVALGPLTNLALAIKLDPSFAKKVGQIVVLGGAF---FVNGNVN-----PAAEANIFGDPEAADIVFTSGADITVVGINV 192 (316)
T ss_pred EEECCcHHHHHHHHHHChHHHhhcCEEEEeCCCc---CCCCCCC-----chhhhhhhcCHHHHHHHHhCCCCeEEEcccc
Confidence 99999999999999 9999999999999999999 5679987 5899999999999999999999999999999
Q ss_pred chhccccHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhcccccccCccccceeeeeeeccCCccceeeEEEEEEEeecC
Q 003794 645 QRRVASFFKILHKLRDRKKTPESVFSQRLLQGLMTLQQSHHSYHHVDTFLGEVLGAVILGGNPHLNQTYKIKSLEIISDG 724 (795)
Q Consensus 645 t~~~~~~~~~l~~l~~~~~tp~a~fl~~ll~~~~~~~~~~~~~~~~~~~l~D~Laaa~l~~p~~l~~~~~~~~v~Ve~~g 724 (795)
|+++.++.+++++|.+.+ ++.++|+.+++++|.+++.... ...++.+||++|++++++| +++ +++..+++|+++|
T Consensus 193 t~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~la~a~~~~P-~~~-~~~~~~v~Ve~~g 267 (316)
T PLN02717 193 TTQVVLTDADLEELRDSK-GKYAQFLCDICKFYRDWHRKSY--GIDGIYLHDPTALLAAVRP-SLF-TYKEGVVRVETEG 267 (316)
T ss_pred cCceecCHHHHHHHHHcC-ChHHHHHHHHHHHHHHHHHhhc--CCCcccCCcHHHhHHhcCc-cce-EEEEecEEEEeCC
Confidence 999999999999998755 7899999999999987765422 2346789999999999999 576 5678999999985
Q ss_pred CcccceeEEEecC-----------CCcceEEEeecCHHHHHHHHHHHHh
Q 003794 725 DISKVGQIIVNQE-----------QGKLVKVLESLNVAVYYDHFAEVLG 762 (795)
Q Consensus 725 ~~~t~G~tv~d~~-----------~~~~v~v~~~vD~~~f~~~l~~~L~ 762 (795)
.+||+|++|+. +.+|++|+.++|.++|+++|.++|.
T Consensus 268 --~trG~tv~d~~~~~~~~~~~~~~~~n~~v~~~vD~~~f~~~~~~~l~ 314 (316)
T PLN02717 268 --ICRGLTLFDNGLKRWNGENAWTGRPPVKVAVTVDAPAVVELVKERLM 314 (316)
T ss_pred --CCCceEeeeccccccccccccCCCCCCEEeeecCHHHHHHHHHHHhc
Confidence 69999999952 1358999999999999999999985
No 4
>PRK10443 rihA ribonucleoside hydrolase 1; Provisional
Probab=100.00 E-value=3.1e-58 Score=499.59 Aligned_cols=302 Identities=24% Similarity=0.320 Sum_probs=259.7
Q ss_pred CCcEEEEcCCCchHHHHHHHHHhCCCCceeEEEEE-EeCCCCchhHhHHHHHHHHHHhCCCCCcEeecccccccCCCCCC
Q 003794 406 GKPVVFDIDMSAGDFLALIYLLKLPVELINLKGIL-VSSTGWATSATVDVVYDLLHMMGRDDIPVGLGDVFAVGEVNPKF 484 (795)
Q Consensus 406 ~kkVIiDtD~g~DDalAL~~lL~~p~~~idl~gIt-v~Gn~~~~~a~~~~a~~iL~~~Gr~dIPV~~Ga~~pl~~~~~~~ 484 (795)
++|||||||+|+||++||+|||++| ++||+||| |+||++.++ +++|+.++|+++||.||||++|+..|+..+.
T Consensus 2 ~~~vIiDtD~g~DDa~AL~~al~~~--~~~l~gIt~v~Gn~~~~~-~~~na~~~l~~~g~~diPV~~Ga~~pl~~~~--- 75 (311)
T PRK10443 2 ALPIILDCDPGHDDAIALVLALASP--ELDVKAVTTSAGNQTPEK-TLRNALRMLTLLNRTDIPVAGGAVKPLMREL--- 75 (311)
T ss_pred CCcEEEECCCChHHHHHHHHHhcCC--CceEEEEEEeCCCCCHHH-HHHHHHHHHHHhCCCCCcEEeCCCCCCCCCC---
Confidence 4799999999999999999999999 99999999 789998776 5689999999999999999999999996542
Q ss_pred CCCCCCCcccccccCCCCCCCccccccccCCCCCCccccccccccccCCCCCCCCCccCchhHHHHHHHHHHhcCCCCcE
Q 003794 485 PPIGGCKYAKAIPLGSGGFLDSDTLYGLARDLPRSPRRYTAENSVRFGASQDNDDPELRQPLAVDVWKSIVESIEPGSKI 564 (795)
Q Consensus 485 p~~~~~~~~~~~~hG~dGlgd~~~~~g~~~~lP~~~~~~~~~~~~~~~~p~~~d~~~~~~~~A~~~~~~i~~~~~~~~~V 564 (795)
.. ....||.+|+++. .+|++.. ..++.+|+++|.+++++ ++++|
T Consensus 76 ------~~-~~~~hG~~Gl~~~--------~~p~~~~-------------------~~~~~~a~~~i~~~~~~--~~~~i 119 (311)
T PRK10443 76 ------II-ADNVHGESGLDGP--------ALPEPTF-------------------APQNCTAVELMAKTLRE--SAEPV 119 (311)
T ss_pred ------cC-ccccCCCCCCCCC--------CCCCCcc-------------------CCCCccHHHHHHHHHHh--CCCCe
Confidence 11 1346999999875 3554311 12356799999998886 45799
Q ss_pred EEEEecchhHHHHHH-hCCCcccccCeEEEecCCCCCCCCCCCccccCCCCcccCCCCCCHHHHHHHHhcCCceEEeccc
Q 003794 565 TILTNGPLTNLAQII-GLQNSSSVIQDVYIVGGNKGQDNEKGNVFTVPSSKYAEFNMFLDPLAAKAVFESKLEIKLIPLH 643 (795)
Q Consensus 565 tIla~GPLTNLA~al-~~P~i~~~I~~vviMGG~~~~~~~~GNv~~~~~~~~aEfN~~~DP~AA~iV~~s~~~itlipld 643 (795)
|||++|||||||.|+ ++|++.++|++||+|||+++ .||++ +.+|||+|+||+||++||+|+++++++|||
T Consensus 120 tiva~GPLTNlA~al~~~P~~~~~i~~iviMGG~~~----~Gn~~-----~~aEfN~~~DPeAA~~Vl~s~~~i~~vpld 190 (311)
T PRK10443 120 TLVSTGPQTNVALLLASHPELHSKIARIVIMGGAMG----LGNWT-----PAAEFNIYVDPEAAEIVFQSGIPIVMAGLD 190 (311)
T ss_pred EEEEccchHHHHHHHHHCchhhhhhCEEEEccCCCC----CCCCC-----cchhhccCcCHHHHHHHHhCCCCEEEeccc
Confidence 999999999999999 99999999999999999993 49986 589999999999999999999999999999
Q ss_pred cchhccccHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhcccccccCccccceeeeeeeccCCccceeeEEEEEEEeec
Q 003794 644 MQRRVASFFKILHKLRDRKKTPESVFSQRLLQGLMTLQQSHHSYHHVDTFLGEVLGAVILGGNPHLNQTYKIKSLEIISD 723 (795)
Q Consensus 644 vt~~~~~~~~~l~~l~~~~~tp~a~fl~~ll~~~~~~~~~~~~~~~~~~~l~D~Laaa~l~~p~~l~~~~~~~~v~Ve~~ 723 (795)
+|+++.++.+++++|...+ +|.++|+.+++.+|.++++.. .+...++.+||++|++++++| +++ +++..+++|+++
T Consensus 191 vt~~~~~t~~~~~~l~~~~-~~~~~~l~~~~~~~~~~~~~~-~~~~~g~~lhD~lava~~~~P-~~~-~~~~~~v~Ve~~ 266 (311)
T PRK10443 191 VTHKAQIMDEDIERIRAIG-NPVATIVAELLDFFMEYHKDE-KWGFVGAPLHDPCTIAWLLKP-ELF-TTVERWVGVETQ 266 (311)
T ss_pred ccceeecCHHHHHHHHhcC-ChHHHHHHHHHHHHHHHhHhh-hCCCCCCCCCCHHHhHHhcCc-ceE-EEEEeCEEEEcC
Confidence 9999999999999998765 899999999999887766531 122246889999999999999 576 578899999998
Q ss_pred CCcccceeEEEecCC----CcceEEEeecCHHHHHHHHHHHHhc
Q 003794 724 GDISKVGQIIVNQEQ----GKLVKVLESLNVAVYYDHFAEVLGD 763 (795)
Q Consensus 724 g~~~t~G~tv~d~~~----~~~v~v~~~vD~~~f~~~l~~~L~~ 763 (795)
|. .+||+|++|... .+|++|++++|.++|+++|+++|.+
T Consensus 267 g~-~trG~tv~~~~~~~~~~~n~~v~~~vd~~~f~~~l~~~l~~ 309 (311)
T PRK10443 267 GE-YTQGMTVVDYYQLTGNKPNATVLVDVDRQGFVDLLAERLKF 309 (311)
T ss_pred CC-CCCceEEEeccccCCCCCCCEEEeecCHHHHHHHHHHHHHh
Confidence 85 799999998532 4689999999999999999999865
No 5
>PRK10768 ribonucleoside hydrolase RihC; Provisional
Probab=100.00 E-value=6e-58 Score=496.30 Aligned_cols=296 Identities=24% Similarity=0.320 Sum_probs=255.4
Q ss_pred CCcEEEEcCCCchHHHHHHHHHhCCCCceeEEEEE-EeCCCCchhHhHHHHHHHHHHhCCCCCcEeecccccccCCCCCC
Q 003794 406 GKPVVFDIDMSAGDFLALIYLLKLPVELINLKGIL-VSSTGWATSATVDVVYDLLHMMGRDDIPVGLGDVFAVGEVNPKF 484 (795)
Q Consensus 406 ~kkVIiDtD~g~DDalAL~~lL~~p~~~idl~gIt-v~Gn~~~~~a~~~~a~~iL~~~Gr~dIPV~~Ga~~pl~~~~~~~ 484 (795)
++|||||||+|+||++||+|||++| +++|+||| |+||++.+++ .+|+.++|+++| .|||||+|+..||..+.
T Consensus 2 ~~kvIiDtD~g~DDa~Al~~al~~p--~~~v~git~v~GN~~~~~~-~~na~~~l~~~g-~dIPV~~Ga~~pl~~~~--- 74 (304)
T PRK10768 2 RLPIILDTDPGIDDAVAIAAALFAP--ELDLKLITTVAGNVSVEKT-TRNALKLLHFFN-SDVPVAQGAAKPLVRPL--- 74 (304)
T ss_pred CCCEEEECCCCHHHHHHHHHHhcCC--CceEEEEEecCCcccHHHH-HHHHHHHHHHhC-CCCeEEeCCccccCCCC---
Confidence 5799999999999999999999999 89999999 7899998875 579999999999 79999999999997642
Q ss_pred CCCCCCCcccccccCCCCCCCccccccccCCCCCCccccccccccccCCCCCCCCCccCchhHHHHHHHHHHhcCCCCcE
Q 003794 485 PPIGGCKYAKAIPLGSGGFLDSDTLYGLARDLPRSPRRYTAENSVRFGASQDNDDPELRQPLAVDVWKSIVESIEPGSKI 564 (795)
Q Consensus 485 p~~~~~~~~~~~~hG~dGlgd~~~~~g~~~~lP~~~~~~~~~~~~~~~~p~~~d~~~~~~~~A~~~~~~i~~~~~~~~~V 564 (795)
.+. ..+||.+||++. .+|.+.. ....++|+++|.+.+++ .+++|
T Consensus 75 ------~~~-~~~hG~~Gl~~~--------~~p~~~~-------------------~~~~~~A~~~i~~~~~~--~~~~i 118 (304)
T PRK10768 75 ------RDA-ASVHGESGMEGY--------DFPEHTR-------------------KPLSIPAVEAMRDALMN--APEPV 118 (304)
T ss_pred ------CCc-ccccCCCCCCCC--------CCCCCCC-------------------CCCCccHHHHHHHHHHh--CCCCE
Confidence 122 346999999986 3554311 12356799999888875 44699
Q ss_pred EEEEecchhHHHHHH-hCCCcccccCeEEEecCCCCCCCCCCCccccCCCCcccCCCCCCHHHHHHHHhcCCceEEeccc
Q 003794 565 TILTNGPLTNLAQII-GLQNSSSVIQDVYIVGGNKGQDNEKGNVFTVPSSKYAEFNMFLDPLAAKAVFESKLEIKLIPLH 643 (795)
Q Consensus 565 tIla~GPLTNLA~al-~~P~i~~~I~~vviMGG~~~~~~~~GNv~~~~~~~~aEfN~~~DP~AA~iV~~s~~~itlipld 643 (795)
+||++|||||||+|+ ++|++.++|++||+|||++. +||++ +.||||+|+||+||++||+|++|++++|||
T Consensus 119 tila~GPLTNlA~al~~~P~i~~~i~~iviMGG~~~----~GN~t-----~~aEfN~~~DPeAA~iVl~s~~~i~~vpld 189 (304)
T PRK10768 119 TLVAIGPLTNIALLLSTYPEVKPYIKRIVLMGGSAG----RGNVT-----PNAEFNIAVDPEAAAIVFRSGIPIVMCGLD 189 (304)
T ss_pred EEEECCcHHHHHHHHHHChhhHhhcCEEEEecCCcC----cCCCC-----ccchhccCCCHHHHHHHHhCCCCeEEeccc
Confidence 999999999999999 99999999999999999993 59986 589999999999999999999999999999
Q ss_pred cchhccccHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhcccccccCccccceeeeeeeccCCccceeeEEEEEEEeec
Q 003794 644 MQRRVASFFKILHKLRDRKKTPESVFSQRLLQGLMTLQQSHHSYHHVDTFLGEVLGAVILGGNPHLNQTYKIKSLEIISD 723 (795)
Q Consensus 644 vt~~~~~~~~~l~~l~~~~~tp~a~fl~~ll~~~~~~~~~~~~~~~~~~~l~D~Laaa~l~~p~~l~~~~~~~~v~Ve~~ 723 (795)
+|+++.++++++++|+.. ++.++|+.+++.+|..... ..++.+||++|++++++| +++ +++..+++|+++
T Consensus 190 vt~~~~~t~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~------~~g~~~hD~la~a~~~~P-~~~-~~~~~~v~Ve~~ 259 (304)
T PRK10768 190 VTNQALLTPDYLATLPEL--NRTGKMLHALFSHYRSGSM------QTGLRMHDVCAIAYLLRP-ELF-TLKPCFVDVETQ 259 (304)
T ss_pred cceeeecCHHHHHHHHhc--ChHHHHHHHHHHHHHhhcc------cCCCCcCcHHHhhheeCc-ccE-EEEEecEEEEeC
Confidence 999999999999999865 5889999999988765432 125789999999999999 566 578899999998
Q ss_pred CCcccceeEEEecCC----CcceEEEeecCHHHHHHHHHHHHhcc
Q 003794 724 GDISKVGQIIVNQEQ----GKLVKVLESLNVAVYYDHFAEVLGDH 764 (795)
Q Consensus 724 g~~~t~G~tv~d~~~----~~~v~v~~~vD~~~f~~~l~~~L~~~ 764 (795)
|. .+||+|++|+.. .++++|+.++|.++|+++|+++|...
T Consensus 260 g~-~trG~tv~d~~~~~~~~~~~~v~~~vd~~~f~~~~~~~l~~~ 303 (304)
T PRK10768 260 GE-FTAGATVVDIDGRLGKPANAQVALDIDVDGFQKWFAEVLALA 303 (304)
T ss_pred CC-CCCceEEEeccccCCCCCCcEEEeecCHHHHHHHHHHHHHhc
Confidence 75 699999998643 46899999999999999999998653
No 6
>cd02651 nuc_hydro_IU_UC_XIUA nuc_hydro_IU_UC_XIUA: inosine-uridine preferring, xanthosine-inosine-uridine-adenosine-preferring and, uridine-cytidine preferring nucleoside hydrolases. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity. This group contains proteins similar to nucleoside hydrolases which hydrolyze both pyrimidine and purine ribonucleosides: the inosine-uridine preferring nucleoside hydrolase from Crithidia fasciculata, the inosine-uridine-xanthosine preferring nucleoside hydrolase RihC from Escherichia coli and the xanthosine-inosine-uridine-adenosine-preferring nucleoside hydrolase RihC from Salmonella enterica serovar Typhimurium. This group also contains proteins similar to the pyrimidine-specific uridine-cytidine preferring nucleoside hydrolases URH1 from Saccharomyces cerevisiae, E. coli RihA and E. coli RihB. E. coli RihA is equally efficient with uridine a
Probab=100.00 E-value=4.8e-58 Score=497.11 Aligned_cols=296 Identities=27% Similarity=0.412 Sum_probs=255.9
Q ss_pred cEEEEcCCCchHHHHHHHHHhCCCCceeEEEEE-EeCCCCchhHhHHHHHHHHHHhCCCCCcEeecccccccCCCCCCCC
Q 003794 408 PVVFDIDMSAGDFLALIYLLKLPVELINLKGIL-VSSTGWATSATVDVVYDLLHMMGRDDIPVGLGDVFAVGEVNPKFPP 486 (795)
Q Consensus 408 kVIiDtD~g~DDalAL~~lL~~p~~~idl~gIt-v~Gn~~~~~a~~~~a~~iL~~~Gr~dIPV~~Ga~~pl~~~~~~~p~ 486 (795)
|||||||+|+||++||+|||.+| ++||+||| |+||++.+++ ++|++++|+++||.||||++|+..||..+.
T Consensus 1 kvIiDtD~g~DDa~Al~~al~~~--~~~l~gIt~v~Gn~~~~~~-~~na~~ll~~~g~~diPV~~Ga~~pl~~~~----- 72 (302)
T cd02651 1 PIIIDCDPGHDDAVAILLALFHP--ELDLLGITTVAGNVPLEKT-TRNALKLLTLLGRTDVPVAAGAARPLVRPL----- 72 (302)
T ss_pred CeEEECCCCHHHHHHHHHHhcCC--CceEEEEEeccCeecHHHH-HHHHHHHHHHhCCCCCcEEcCCCcCcCCCC-----
Confidence 69999999999999999999999 89999999 7899988764 679999999999999999999999997642
Q ss_pred CCCCCcccccccCCCCCCCccccccccCCCCCCccccccccccccCCCCCCCCCccCchhHHHHHHHHHHhcCCCCcEEE
Q 003794 487 IGGCKYAKAIPLGSGGFLDSDTLYGLARDLPRSPRRYTAENSVRFGASQDNDDPELRQPLAVDVWKSIVESIEPGSKITI 566 (795)
Q Consensus 487 ~~~~~~~~~~~hG~dGlgd~~~~~g~~~~lP~~~~~~~~~~~~~~~~p~~~d~~~~~~~~A~~~~~~i~~~~~~~~~VtI 566 (795)
.+. ..+||.+||++. .+|++... ...++|+++|.+++++ ++ ++|||
T Consensus 73 ----~~~-~~~hG~~Gl~~~--------~~p~~~~~-------------------~~~~~a~~~i~~~~~~-~~-~evti 118 (302)
T cd02651 73 ----ITA-SDIHGESGLDGA--------DLPPPPRR-------------------PEDIHAVDAIIDTLRA-SP-EPITL 118 (302)
T ss_pred ----CCC-cCCCCCCCCCCC--------CCCCCCCC-------------------cCCCcHHHHHHHHHHh-CC-CCEEE
Confidence 122 346999999986 36653221 2356799999999986 44 59999
Q ss_pred EEecchhHHHHHH-hCCCcccccCeEEEecCCCCCCCCCCCccccCCCCcccCCCCCCHHHHHHHHhcCCceEEeccccc
Q 003794 567 LTNGPLTNLAQII-GLQNSSSVIQDVYIVGGNKGQDNEKGNVFTVPSSKYAEFNMFLDPLAAKAVFESKLEIKLIPLHMQ 645 (795)
Q Consensus 567 la~GPLTNLA~al-~~P~i~~~I~~vviMGG~~~~~~~~GNv~~~~~~~~aEfN~~~DP~AA~iV~~s~~~itlipldvt 645 (795)
|++|||||||.|+ ++|++.++|++||+|||++ .+||++ +.||||||+||+||++||+|+++++++|||+|
T Consensus 119 va~GPLTNlA~al~~~P~~~~~ik~iviMGG~~----~~GN~t-----p~aEfN~~~DPeAA~~Vl~s~~~i~~v~ldvt 189 (302)
T cd02651 119 VATGPLTNIALLLRKYPELAERIKEIVLMGGAL----GRGNIT-----PAAEFNIFVDPEAAKIVFNSGIPITMVPLDVT 189 (302)
T ss_pred EEcCchHHHHHHHHHChhhHhhcCEEEEecCCc----CCCCCC-----hHHHhhcccCHHHHHHHHhCCCCeEEecccee
Confidence 9999999999999 9999999999999999999 369986 58999999999999999999999999999999
Q ss_pred hhccccHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhcccccccCccccceeeeeeeccCCccceeeEEEEEEEeecCC
Q 003794 646 RRVASFFKILHKLRDRKKTPESVFSQRLLQGLMTLQQSHHSYHHVDTFLGEVLGAVILGGNPHLNQTYKIKSLEIISDGD 725 (795)
Q Consensus 646 ~~~~~~~~~l~~l~~~~~tp~a~fl~~ll~~~~~~~~~~~~~~~~~~~l~D~Laaa~l~~p~~l~~~~~~~~v~Ve~~g~ 725 (795)
+++.++.+++++|.+.+ +|.++|+.+++++|.+...... ..++.+||++|++++++| +++ +++..+++|+++|.
T Consensus 190 ~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~D~la~~~~~~p-~~~-~~~~~~v~Ve~~g~ 263 (302)
T cd02651 190 HKALATPEVIERIRALG-NPVGKMLAELLDFFAETYGSAF---TEGPPLHDPCAVAYLLDP-ELF-TTKRANVDVETEGE 263 (302)
T ss_pred eeeccCHHHHHHHHHcC-ChHHHHHHHHHHHHHHHHHhhc---cCCCCCCcHHHhHHhcCc-cce-EEEEeeEEEEcCCC
Confidence 99999999999998765 7899999999998875443211 246889999999999999 566 56789999999875
Q ss_pred cccceeEEEecCC----CcceEEEeecCHHHHHHHHHHHH
Q 003794 726 ISKVGQIIVNQEQ----GKLVKVLESLNVAVYYDHFAEVL 761 (795)
Q Consensus 726 ~~t~G~tv~d~~~----~~~v~v~~~vD~~~f~~~l~~~L 761 (795)
.+||+|++|+.+ .++++|+.++|.++|+++|.++|
T Consensus 264 -~~rG~tv~d~~~~~~~~~~~~v~~~vd~~~f~~~l~~~l 302 (302)
T cd02651 264 -LTRGRTVVDLRGVTGRPANAQVAVDVDVEKFWDLLLEAL 302 (302)
T ss_pred -CCCceEEEeccccCCCCCCcEEeeecCHHHHHHHHHHhC
Confidence 799999998643 36899999999999999998864
No 7
>cd02653 nuc_hydro_3 NH_3: A subgroup of nucleoside hydrolases. This group contains eukaryotic and bacterial proteins similar to nucleoside hydrolases. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity.
Probab=100.00 E-value=2.6e-57 Score=493.95 Aligned_cols=301 Identities=25% Similarity=0.347 Sum_probs=259.3
Q ss_pred cEEEEcCCCchHHHHHHHHHhCCCCceeEEEEE-EeCCCCchhHhHHHHHHHHHHhCCCCCcEeecccccccCCCCCCCC
Q 003794 408 PVVFDIDMSAGDFLALIYLLKLPVELINLKGIL-VSSTGWATSATVDVVYDLLHMMGRDDIPVGLGDVFAVGEVNPKFPP 486 (795)
Q Consensus 408 kVIiDtD~g~DDalAL~~lL~~p~~~idl~gIt-v~Gn~~~~~a~~~~a~~iL~~~Gr~dIPV~~Ga~~pl~~~~~~~p~ 486 (795)
|||||||+|+||++||+|||.+| ++||+||| |+||++.++ +.+|+.++|+++||.+||||.|+..||..+.
T Consensus 1 kvIiDtD~GiDDa~AL~~al~~p--~iel~gIt~v~GN~~~~~-~~~Na~~ll~~~g~~dIPV~~Ga~~pl~~~~----- 72 (320)
T cd02653 1 KVIIDCDPGIDDALALLYLLASP--DLDVVGITTTAGNVPVEQ-VAANALGVLELLGRTDIPVYLGADKPLAGPL----- 72 (320)
T ss_pred CEEEECCCChHHHHHHHHHhhCC--CCeEEEEEEcCCccCHHH-HHHHHHHHHHHcCCCCCcEEeCCCccCCCCC-----
Confidence 69999999999999999999999 89999999 789998776 4679999999999999999999999997642
Q ss_pred CCCCCcccccccCCCCCCCccccccccCCCCCCccccccccccccCCCCCCCCCccCchhHHHHHHHHHHhcCCCCcEEE
Q 003794 487 IGGCKYAKAIPLGSGGFLDSDTLYGLARDLPRSPRRYTAENSVRFGASQDNDDPELRQPLAVDVWKSIVESIEPGSKITI 566 (795)
Q Consensus 487 ~~~~~~~~~~~hG~dGlgd~~~~~g~~~~lP~~~~~~~~~~~~~~~~p~~~d~~~~~~~~A~~~~~~i~~~~~~~~~VtI 566 (795)
.+ ....||.+|||+. .+|++... ...++|+++|.+++++ .+ +|||
T Consensus 73 ----~~-~~~~hG~dGlg~~--------~~p~~~~~-------------------~~~~~A~~~i~~~~~~--~~-eiti 117 (320)
T cd02653 73 ----TT-AQDTHGPDGLGYA--------ELPASTRT-------------------LSDESAAQAWVDLARA--HP-DLIG 117 (320)
T ss_pred ----CC-cccccCCCCCCCC--------CCCCCCCC-------------------CCCCCHHHHHHHHHHh--CC-CeEE
Confidence 12 2346999999876 35543211 2356799999999886 44 8999
Q ss_pred EEecchhHHHHHH-hCCCcccccCeEEEecCCCCCCCCCCCccccCCCCcccCCCCCCHHHHHHHHhc----CCceEEec
Q 003794 567 LTNGPLTNLAQII-GLQNSSSVIQDVYIVGGNKGQDNEKGNVFTVPSSKYAEFNMFLDPLAAKAVFES----KLEIKLIP 641 (795)
Q Consensus 567 la~GPLTNLA~al-~~P~i~~~I~~vviMGG~~~~~~~~GNv~~~~~~~~aEfN~~~DP~AA~iV~~s----~~~itlip 641 (795)
|++|||||||.|+ ++|++.++|++||+|||++ ..+||++ +.||||+|+|||||++||+| +++++|+|
T Consensus 118 va~GPLTNlA~al~~~P~~~~~ik~iviMGG~~---~~~GN~t-----p~aEfN~~~DPeAA~iVl~s~~~~~~~i~~vp 189 (320)
T cd02653 118 LATGPLTNLALALREEPELPRLLRRLVIMGGAF---NSRGNTS-----PVAEWNYWVDPEAAKEVLAAFGGHPVRPTICG 189 (320)
T ss_pred EECCchHHHHHHHHHChHHHHhcCEEEEECCCc---CCCCCCC-----cHhHHhhhcCHHHHHHHHhccccCCCCeEEec
Confidence 9999999999999 9999999999999999998 4679987 58999999999999999998 69999999
Q ss_pred cccchhccccHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhcccccccCccccceeeeeeeccCCccceeeEEEEEEEe
Q 003794 642 LHMQRRVASFFKILHKLRDRKKTPESVFSQRLLQGLMTLQQSHHSYHHVDTFLGEVLGAVILGGNPHLNQTYKIKSLEII 721 (795)
Q Consensus 642 ldvt~~~~~~~~~l~~l~~~~~tp~a~fl~~ll~~~~~~~~~~~~~~~~~~~l~D~Laaa~l~~p~~l~~~~~~~~v~Ve 721 (795)
||+|+++.++.+++++|.+.+ ++.++|+.+++.+|.++.+... ...++.+||++|++++++| +++ +++..+++|+
T Consensus 190 lDvt~~~~~t~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~lhD~lAva~~~~P-~l~-~~~~~~v~Ve 264 (320)
T cd02653 190 LDVTRAVVLTPNLLERLARAK-DSVGAFIEDALRFYFEFHWAYG--HGYGAVIHDPLAAAVALNP-NLA-RGRPAYVDVE 264 (320)
T ss_pred cccceeeecCHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHHhcC--CCCCCCCChHHHHHHhcCh-hhe-EEEEeeEEEE
Confidence 999999999999999998765 7899999999998887665322 2336789999999999999 576 6788999999
Q ss_pred ecCCcccceeEEEecCC----CcceEEEeecCHHHHHHHHHHHHhcccc
Q 003794 722 SDGDISKVGQIIVNQEQ----GKLVKVLESLNVAVYYDHFAEVLGDHKQ 766 (795)
Q Consensus 722 ~~g~~~t~G~tv~d~~~----~~~v~v~~~vD~~~f~~~l~~~L~~~~~ 766 (795)
++|. . +|+|++|+.. .+|++|+.++|.++|+++|+++|.....
T Consensus 265 ~~g~-~-~G~tv~d~~~~~~~~~n~~v~~~vD~~~f~~~~~~~l~~~~~ 311 (320)
T cd02653 265 CTGV-L-TGQTVVDWAGFWGKGANAEILTKVDSQDFMALFIERVLAIAD 311 (320)
T ss_pred eCCC-C-CceEEEeccccCCCCCCcEEeeccCHHHHHHHHHHHHHHHHH
Confidence 9985 3 5999999653 5699999999999999999999976653
No 8
>cd02649 nuc_hydro_CeIAG nuc_hydro_CeIAG: Nucleoside hydrolases similar to the inosine-adenosine-guanosine-preferring nucleoside hydrolase from Caenorhabditis elegans. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity. This group contains eukaryotic, bacterial and archeal proteins similar to the purine-preferring nucleoside hydrolase (IAG-NH) from C. elegans and the salivary purine nucleosidase from Aedes aegypti. C. elegans IAG-NH exhibits a high affinity for the substrate analogue p-nitrophenylriboside (p-NPR).
Probab=100.00 E-value=8e-57 Score=487.07 Aligned_cols=297 Identities=24% Similarity=0.305 Sum_probs=252.1
Q ss_pred CcEEEEcCCCchHHHHHHHHHhCCCCceeEEEEE-EeCCCCchhHhHHHHHHHHHHhCCCCCcEeecccccccCCCCCCC
Q 003794 407 KPVVFDIDMSAGDFLALIYLLKLPVELINLKGIL-VSSTGWATSATVDVVYDLLHMMGRDDIPVGLGDVFAVGEVNPKFP 485 (795)
Q Consensus 407 kkVIiDtD~g~DDalAL~~lL~~p~~~idl~gIt-v~Gn~~~~~a~~~~a~~iL~~~Gr~dIPV~~Ga~~pl~~~~~~~p 485 (795)
+|||||||+|+||++||+|||.+| ++||+||| |+||++.+++ .+|++++|+++||.||||+.|+..||..+..
T Consensus 1 ~kviiDtD~g~DD~~Al~~al~~~--~~~l~gIt~v~GN~~~~~~-~~na~~~l~~~g~~diPV~~Ga~~pl~~~~~--- 74 (306)
T cd02649 1 RKLIIDTDCGGDDAWALLMALASP--NVEVLAITCVHGNTNVEQV-VKNALRVLEACGRRDIPVYRGASKPLLGPGP--- 74 (306)
T ss_pred CeEEEECCCChHHHHHHHHHhcCC--CceEEEEEEccCCcCHHHH-HHHHHHHHHHhCCCCCCEecCCCccCCCCCC---
Confidence 489999999999999999999999 89999999 7899998874 6899999999999999999999999976521
Q ss_pred CCCCCCcccccccCCCCCCCccccccccCCCCCCccccccccccccCCCCCCCCCccCchhHHHHHHHHHHhcCCCCcEE
Q 003794 486 PIGGCKYAKAIPLGSGGFLDSDTLYGLARDLPRSPRRYTAENSVRFGASQDNDDPELRQPLAVDVWKSIVESIEPGSKIT 565 (795)
Q Consensus 486 ~~~~~~~~~~~~hG~dGlgd~~~~~g~~~~lP~~~~~~~~~~~~~~~~p~~~d~~~~~~~~A~~~~~~i~~~~~~~~~Vt 565 (795)
. ...+||.+||++. .+|++... ..+...+|+++|.+++++ .+++||
T Consensus 75 ------~-~~~~hG~~Glg~~--------~~p~~~~~-----------------~~~~~~~a~~~i~~~~~~--~~~~vt 120 (306)
T cd02649 75 ------T-AAYFHGKDGFGDV--------GFPEPKDE-----------------LELQKEHAVDAIIRLVRE--YPGEIT 120 (306)
T ss_pred ------C-ccccCCCCCCCCC--------CCCCCccc-----------------CCcCCCCHHHHHHHHHHh--CCCCeE
Confidence 1 2346999999886 35543210 012346799999999885 457999
Q ss_pred EEEecchhHHHHHH-hCCCcccccCeEEEecCCCCCCCCCCCccccCCCCcccCCCCCCHHHHHHHHhc-CCceEEeccc
Q 003794 566 ILTNGPLTNLAQII-GLQNSSSVIQDVYIVGGNKGQDNEKGNVFTVPSSKYAEFNMFLDPLAAKAVFES-KLEIKLIPLH 643 (795)
Q Consensus 566 Ila~GPLTNLA~al-~~P~i~~~I~~vviMGG~~~~~~~~GNv~~~~~~~~aEfN~~~DP~AA~iV~~s-~~~itlipld 643 (795)
||++|||||||.|+ ++|++.++|++||+|||++ ..+||++ +.||||+|+||+||++||+| +++++|+|||
T Consensus 121 iva~GPLTNlA~al~~~p~~~~~i~~iviMGG~~---~~~GN~~-----~~aEfN~~~DPeAA~~Vl~s~~~~i~lv~ld 192 (306)
T cd02649 121 LVALGPLTNLALAYRLDPSLPQKIKRLYIMGGNR---EGVGNTT-----PAAEFNFHVDPEAAHIVLNSFGCPITIVPWE 192 (306)
T ss_pred EEecccHHHHHHHHHHChHHHHhcCeEEEeCCCc---cCCCCCC-----cccccccccCHHHHHHHHhcCCCCEEEEccc
Confidence 99999999999999 9999999999999999998 4579987 58999999999999999999 9999999999
Q ss_pred cch-hccccHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhcccccccCccccceeeeeeeccCCccceeeEEEEEEEee
Q 003794 644 MQR-RVASFFKILHKLRDRKKTPESVFSQRLLQGLMTLQQSHHSYHHVDTFLGEVLGAVILGGNPHLNQTYKIKSLEIIS 722 (795)
Q Consensus 644 vt~-~~~~~~~~l~~l~~~~~tp~a~fl~~ll~~~~~~~~~~~~~~~~~~~l~D~Laaa~l~~p~~l~~~~~~~~v~Ve~ 722 (795)
+|+ ++.++++++++|++. ++.++|+.+++..|.++.+.. +...++.+||+||++++++| +++...+..+++|++
T Consensus 193 vt~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~--~~~~g~~~hD~lava~~~~P-~l~~~~~~~~v~Ve~ 267 (306)
T cd02649 193 TTLLAFPLDWEFEDKWANR--LEKALFAESLNRREYAFASEG--LGGDGWVPCDALAVAAALDP-SIITRRLTYAVDVEL 267 (306)
T ss_pred cccceeecCHHHHHHHHhc--ChHHHHHHHHHHHHHHHHHhh--cCCCCCCCCcHHHHHHHcCH-hHEEEEEeeeEEEEE
Confidence 999 999999999999865 478999999999887765432 22347889999999999999 576332334599999
Q ss_pred cCCcccceeEEEecCC----CcceEEEeecCHHHHHHHH
Q 003794 723 DGDISKVGQIIVNQEQ----GKLVKVLESLNVAVYYDHF 757 (795)
Q Consensus 723 ~g~~~t~G~tv~d~~~----~~~v~v~~~vD~~~f~~~l 757 (795)
++. .++|+|++|+.+ .+|++|+.++|.++|+++|
T Consensus 268 ~g~-~~~G~tv~d~~~~~~~~~n~~v~~~vD~~~f~~~~ 305 (306)
T cd02649 268 HGE-LTRGQMVVDWLGTLKKKPNARVITKIDREKFKELL 305 (306)
T ss_pred CCC-CCcceEEEeccccCCCCCCCEEehhcCHHHHHHHh
Confidence 985 799999999653 4699999999999999886
No 9
>cd02650 nuc_hydro_CaPnhB NH_hydro_CaPnhB: A subgroup of nucleoside hydrolases similar to Corynebacterium ammoniagenes Purine/pyrimidine nucleoside hydrolase (pnhB). Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity.
Probab=100.00 E-value=3.4e-56 Score=483.10 Aligned_cols=295 Identities=23% Similarity=0.323 Sum_probs=249.7
Q ss_pred cEEEEcCCCchHHHHHHHHHhCCCCceeEEEEE-EeCCCCchhHhHHHHHHHHHHhCCCCCcEeecccccccCCCCCCCC
Q 003794 408 PVVFDIDMSAGDFLALIYLLKLPVELINLKGIL-VSSTGWATSATVDVVYDLLHMMGRDDIPVGLGDVFAVGEVNPKFPP 486 (795)
Q Consensus 408 kVIiDtD~g~DDalAL~~lL~~p~~~idl~gIt-v~Gn~~~~~a~~~~a~~iL~~~Gr~dIPV~~Ga~~pl~~~~~~~p~ 486 (795)
|||||||+|+||++||+|||.+| +++|+||| |+||++.+++ ++|+.++|+++||.+|||+.|+..|+..+..
T Consensus 1 kvIiDtD~g~DD~~AL~~al~~p--~~~v~gIt~~~Gn~~~~~~-~~na~~~l~~~g~~diPV~~G~~~pl~~~~~---- 73 (304)
T cd02650 1 KLILDTDPGIDDAMALAYALAHP--DVDLIGVTTVYGNVTIETA-TRNALALLELFGRPDVPVAEGAAKPLTRPPF---- 73 (304)
T ss_pred CEEEECCCCHHHHHHHHHHhcCC--CCEEEEEEEccCCcCHHHH-HHHHHHHHHHhCCCCCCEEcCCCCCCCCCCc----
Confidence 69999999999999999999999 89999999 7899998764 6799999999999999999999999976421
Q ss_pred CCCCCcccccccCCCCCCCccccccccCCCCCCccccccccccccCCCCCCCCCccCchhHHHHHHHHHHhcCCCCcEEE
Q 003794 487 IGGCKYAKAIPLGSGGFLDSDTLYGLARDLPRSPRRYTAENSVRFGASQDNDDPELRQPLAVDVWKSIVESIEPGSKITI 566 (795)
Q Consensus 487 ~~~~~~~~~~~hG~dGlgd~~~~~g~~~~lP~~~~~~~~~~~~~~~~p~~~d~~~~~~~~A~~~~~~i~~~~~~~~~VtI 566 (795)
. .....||.+||++. .+|..... +...+|+++|.+++++ .+++|||
T Consensus 74 ----~-~~~~~hg~dGlg~~--------~~p~~~~~-------------------~~~~~A~~~l~~~~~~--~~~~vti 119 (304)
T cd02650 74 ----R-IATFVHGDNGLGDV--------ELPAPPRQ-------------------PEDESAADFLIELANE--YPGELTL 119 (304)
T ss_pred ----C-CcCCCCCCCCCCCC--------CCCCCCCC-------------------cCccCHHHHHHHHHHh--CCCCeEE
Confidence 0 12457999999886 35653221 2346799999998886 3469999
Q ss_pred EEecchhHHHHHH-hCCCcccccCeEEEecCCCCCCCCCCCccccCCCCcccCCCCCCHHHHHHHHhcCCceEEeccccc
Q 003794 567 LTNGPLTNLAQII-GLQNSSSVIQDVYIVGGNKGQDNEKGNVFTVPSSKYAEFNMFLDPLAAKAVFESKLEIKLIPLHMQ 645 (795)
Q Consensus 567 la~GPLTNLA~al-~~P~i~~~I~~vviMGG~~~~~~~~GNv~~~~~~~~aEfN~~~DP~AA~iV~~s~~~itlipldvt 645 (795)
|++|||||||.|+ .+|++.++|++||+|||++ ...||++ +.+|||+|+||+||++||+|+++++++|||+|
T Consensus 120 vaiGPLTNlA~al~~~P~i~~~ik~iviMGG~~---~~~GN~~-----p~aEfN~~~DP~AA~iVl~s~~~i~~vpldvt 191 (304)
T cd02650 120 VAVGPLTNLALALARDPDFAKLVKQVVVMGGAF---TVPGNVT-----PAAEANIHGDPEAADIVFTAGADLTMVGLDVT 191 (304)
T ss_pred EECCcHHHHHHHHHHCcHHHhhcCEEEEeCccc---cCCCCCC-----chHHhhcccCHHHHHHHHhCCCCeEEeCCcee
Confidence 9999999999999 9999999999999999999 4679987 58999999999999999999999999999999
Q ss_pred hhccccHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhcccccccCccccceeeeeeeccCCccceeeEEEEEEEeecCC
Q 003794 646 RRVASFFKILHKLRDRKKTPESVFSQRLLQGLMTLQQSHHSYHHVDTFLGEVLGAVILGGNPHLNQTYKIKSLEIISDGD 725 (795)
Q Consensus 646 ~~~~~~~~~l~~l~~~~~tp~a~fl~~ll~~~~~~~~~~~~~~~~~~~l~D~Laaa~l~~p~~l~~~~~~~~v~Ve~~g~ 725 (795)
+++.++.+++++|.+.+ ++.++|+.++++.|.++.... +...++++||++|++++++| +++ .++..+++|+++|
T Consensus 192 ~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~g~~l~D~la~~~~~~P-~~~-~~~~~~v~Ve~~g- 265 (304)
T cd02650 192 TQTLLTREDLDELRDSG-GKAGQFLADMLDYYIDFYQES--PGLRGCALHDPLAVAAAVDP-SLF-TTREGVVRVETEG- 265 (304)
T ss_pred eeEecCHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHHhc--cCCCcccCCcHHHHHhhcCc-cce-EEEEeeEEEEeCC-
Confidence 99999999999998765 789999999999988766532 33457889999999999999 576 5677899999876
Q ss_pred cccceeEEEecCC------CcceEEEeecCH-HHHHHHHH
Q 003794 726 ISKVGQIIVNQEQ------GKLVKVLESLNV-AVYYDHFA 758 (795)
Q Consensus 726 ~~t~G~tv~d~~~------~~~v~v~~~vD~-~~f~~~l~ 758 (795)
.+||+|++|+.+ .+|+++...+|. ++|+++|+
T Consensus 266 -~~~G~tv~d~~~~~~~~~~~~~~~~~~~d~~~~f~~~~~ 304 (304)
T cd02650 266 -PTRGRTIGDRDGRRFWDSSPNATVAVDVDVDERFLKRLM 304 (304)
T ss_pred -CCCceEEEeccccccccCCCCceEEEEEChhHHHHHHhC
Confidence 689999999643 346445545544 99999873
No 10
>PTZ00313 inosine-adenosine-guanosine-nucleoside hydrolase; Provisional
Probab=100.00 E-value=8.9e-56 Score=483.07 Aligned_cols=317 Identities=23% Similarity=0.297 Sum_probs=251.3
Q ss_pred CCcEEEEcCCCchHHHHHHHHHhCCCCc-eeEEEEE-EeCCCCchhHhHHHHHHHHHHhCCC-CCcEeecccccccCCCC
Q 003794 406 GKPVVFDIDMSAGDFLALIYLLKLPVEL-INLKGIL-VSSTGWATSATVDVVYDLLHMMGRD-DIPVGLGDVFAVGEVNP 482 (795)
Q Consensus 406 ~kkVIiDtD~g~DDalAL~~lL~~p~~~-idl~gIt-v~Gn~~~~~a~~~~a~~iL~~~Gr~-dIPV~~Ga~~pl~~~~~ 482 (795)
+||||||||+|+||++||+|||.+| + +||+||| |+||+..+++ .+|++++|+++||. ||||+.|+..|+....+
T Consensus 2 ~~~vIiD~D~GiDDa~Al~~al~~~--~~~~v~gIT~v~GNv~~~~~-~~Na~~vl~~~g~~~dvPv~~ga~~~~~~~~~ 78 (326)
T PTZ00313 2 PKPVILDHDGNHDDLVALALLLGNP--EKVKVIGCICTDADCFVDDA-FNVTGKLMCMMHAREATPLFPIGKSSFKGVNP 78 (326)
T ss_pred CCCEEEeCCCCHHHHHHHHHHhcCC--cCcEEEEEEEecCCccHHHH-HHHHHHHHHHhCCCCCCCeeeecCCcccCCCC
Confidence 5799999999999999999999998 6 9999999 8899998875 57999999999996 89999999999865321
Q ss_pred CCCCCCCCCcccccccCCCCCCCccccccccCCCCCCccccccccccccCCCCCCCCCccCchhHHHHHHHHHHhcCCCC
Q 003794 483 KFPPIGGCKYAKAIPLGSGGFLDSDTLYGLARDLPRSPRRYTAENSVRFGASQDNDDPELRQPLAVDVWKSIVESIEPGS 562 (795)
Q Consensus 483 ~~p~~~~~~~~~~~~hG~dGlgd~~~~~g~~~~lP~~~~~~~~~~~~~~~~p~~~d~~~~~~~~A~~~~~~i~~~~~~~~ 562 (795)
++. .+. --.||.+|||+. .+|++...+ ....+.....+|+++|.+++++ +++
T Consensus 79 -~~~----~~~-~g~~G~~glg~~--------~~p~~~~~~------------~~~~~~~~~~~a~~~i~~~i~~--~p~ 130 (326)
T PTZ00313 79 -FPS----EWR-WSAKNMDDLPCL--------NIPEHVAIW------------EKLKPENEALVGEELLADLVMS--SPE 130 (326)
T ss_pred -Ccc----hhe-ecccCCCCCCCC--------CCCCccccc------------cccCCccccchHHHHHHHHHHh--CCC
Confidence 110 000 013777787764 356432100 0000111124589999999986 446
Q ss_pred cEEEEEecchhHHHHHH-hCC-CcccccCeEEEecCCCCCCCCCCCccccCCCCcccCCCCCCHHHHHHHHhcC-CceEE
Q 003794 563 KITILTNGPLTNLAQII-GLQ-NSSSVIQDVYIVGGNKGQDNEKGNVFTVPSSKYAEFNMFLDPLAAKAVFESK-LEIKL 639 (795)
Q Consensus 563 ~VtIla~GPLTNLA~al-~~P-~i~~~I~~vviMGG~~~~~~~~GNv~~~~~~~~aEfN~~~DP~AA~iV~~s~-~~itl 639 (795)
+||||++|||||||.|+ ++| ++.++|++||||||++ ..+||++....++.||||||+|||||++||+|+ ++++|
T Consensus 131 eItiva~GPLTNlAlal~~~pp~~~~~ik~iviMGG~~---~~~GN~~~~~~tp~AEfN~~~DPeAA~iV~~s~~~~i~~ 207 (326)
T PTZ00313 131 KVTICVTGPLSNVAWCIEKYGEEFTKKVEECVIMGGAV---DVGGNVFLPGTDGSAEWNIYWDPPAAKTVLMCPHIRKVL 207 (326)
T ss_pred CEEEEECCcHHHHHHHHHhCCHHHHHhcCEEEEeCCcc---cCCCCccCCCCCcccchhhhcCHHHHHHHHhCCCCCEEE
Confidence 89999999999999999 986 9999999999999999 467998421114689999999999999999996 99999
Q ss_pred eccccchhccccHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhcccccccCccccceeeeeeeccCCccceeeEEEEEE
Q 003794 640 IPLHMQRRVASFFKILHKLRDRKKTPESVFSQRLLQGLMTLQQSHHSYHHVDTFLGEVLGAVILGGNPHLNQTYKIKSLE 719 (795)
Q Consensus 640 ipldvt~~~~~~~~~l~~l~~~~~tp~a~fl~~ll~~~~~~~~~~~~~~~~~~~l~D~Laaa~l~~p~~l~~~~~~~~v~ 719 (795)
+|||+|+++.++++.+++|++.++.+.++|+.+++..+..+. ... ...++.+||++|++|+++| +++ +++..+|+
T Consensus 208 v~LdvT~~~~~t~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~g~~~hD~lA~a~~~~P-el~-~~~~~~v~ 282 (326)
T PTZ00313 208 FSLDSTNSVPVTSEVVKKFGAQNKYLLSQFVGSTWAMCTHHE-LLR--PGDGYYAWDVLTAAYVIER-NLA-ELEPVPLE 282 (326)
T ss_pred eccccccceeCCHHHHHHHHhcCcchHHHHHHHHHhhhhhhh-hhc--CCCCCcCcHHHHHHHhcCh-heE-EEEEEEEE
Confidence 999999999999999999987653468899888765432211 101 1236889999999999999 576 67889999
Q ss_pred EeecCCcccceeEEEecCCCcceEEEeecCHHHHHHHHHHHHh
Q 003794 720 IISDGDISKVGQIIVNQEQGKLVKVLESLNVAVYYDHFAEVLG 762 (795)
Q Consensus 720 Ve~~g~~~t~G~tv~d~~~~~~v~v~~~vD~~~f~~~l~~~L~ 762 (795)
|++++. .++|+|+.+....++++|+.++|.++|+++|+++|.
T Consensus 283 Ve~~~~-~t~G~tv~~~~~~~~~~V~~~vd~~~f~~~~~~~l~ 324 (326)
T PTZ00313 283 VVVEKA-KNEGRTRRAAEGAACTYVAKNTNAELFYDMVLDSAR 324 (326)
T ss_pred EEeCCC-CCCceEEeCCCCCCceEEEecCCHHHHHHHHHHHHh
Confidence 999864 799999997655567999999999999999999875
No 11
>PF01156 IU_nuc_hydro: Inosine-uridine preferring nucleoside hydrolase; InterPro: IPR001910 Inosine-uridine preferring nucleoside hydrolase (3.2.2.1 from EC) (IU-nucleoside hydrolase or IUNH) is an enzyme first identified in protozoan [] that catalyses the hydrolysis of all of the commonly occuring purine and pyrimidine nucleosides into ribose and the associated base, but has a preference for inosine and uridine as substrates. This enzyme is important for these parasitic organisms, which are deficient in de novo synthesis of purines, to salvage the host purine nucleosides. IUNH from Crithidia fasciculata has been sequenced and characterised, it is an homotetrameric enzyme of subunits of 34 Kd. An histidine has been shown to be important for the catalytic mechanism, it acts as a proton donor to activate the hypoxanthine leaving group. A highly conserved region located in the N-terminal extremity contains four conserved aspartates that have been shown [] to be located in the active site cavity. IUNH is evolutionary related to a number of uncharacterised proteins from various biological sources. This entry represents the structural domain of IUNH.; PDB: 1EZR_D 2MAS_B 1MAS_A 3MKM_C 3MKN_C 2C40_A 3T8J_A 2FF2_B 1KIE_A 2FF1_A ....
Probab=100.00 E-value=3.1e-56 Score=485.04 Aligned_cols=304 Identities=30% Similarity=0.398 Sum_probs=244.4
Q ss_pred CCcEEEEcCCCchHHHHHHHHHhCCCCceeEEEEE-EeCCCCchhHhHHHHHHHHHHhC-CCCCcEeecccccccCCCCC
Q 003794 406 GKPVVFDIDMSAGDFLALIYLLKLPVELINLKGIL-VSSTGWATSATVDVVYDLLHMMG-RDDIPVGLGDVFAVGEVNPK 483 (795)
Q Consensus 406 ~kkVIiDtD~g~DDalAL~~lL~~p~~~idl~gIt-v~Gn~~~~~a~~~~a~~iL~~~G-r~dIPV~~Ga~~pl~~~~~~ 483 (795)
++|||||||+|+||++||++||.+| ++||+||| |.||+..++ +++|+.++|+++| |.+|||+.|+..|+..+
T Consensus 1 ~~~viiDtD~g~DD~~Al~~~l~~~--~i~i~gIt~~~Gn~~~~~-~~~n~~~~l~~~g~~~~iPV~~G~~~pl~~~--- 74 (312)
T PF01156_consen 1 MKKVIIDTDPGIDDALALALALASP--EIEILGITTVFGNVSVEQ-AARNALRLLELAGGRDDIPVYKGADRPLVRP--- 74 (312)
T ss_dssp -EEEEEEE--SHHHHHHHHHHHHHT--TEEEEEEEE-SSSS-HHH-HHHHHHHHHHHTTTCSTS-EEEEESS-SSSS---
T ss_pred CcEEEEECCCChhHHHHHHHHHhCC--CcEEEEEEEecCCcchHH-HHHHHHHHHHHhcCCCccceeecchhhhhcc---
Confidence 4799999999999999999999999 89999999 679987776 4689999999996 77899999999999643
Q ss_pred CCCCCCCCcccccccCCCCCCCccccccccCCCCCCccccccccccccCCCCCCCCCccCchhHHHHHHHHHHhcCCCCc
Q 003794 484 FPPIGGCKYAKAIPLGSGGFLDSDTLYGLARDLPRSPRRYTAENSVRFGASQDNDDPELRQPLAVDVWKSIVESIEPGSK 563 (795)
Q Consensus 484 ~p~~~~~~~~~~~~hG~dGlgd~~~~~g~~~~lP~~~~~~~~~~~~~~~~p~~~d~~~~~~~~A~~~~~~i~~~~~~~~~ 563 (795)
..+ ....||.+||++. .+|+.. +.+...+++|+++|.+++++ ++++
T Consensus 75 ------~~~-~~~~~g~~gl~~~--------~~~~~~-----------------~~~~~~~~~a~~~i~~~~~~--~~~~ 120 (312)
T PF01156_consen 75 ------PEY-APEIHGEDGLGDA--------SLPEPE-----------------DEPYPSDEDAVDFIIELLKA--YPGE 120 (312)
T ss_dssp ------HHH-HHHHHTTTSSTSS---------HHSSS-----------------CHCHBHSSBHHHHHHHHHHH--SSST
T ss_pred ------ccc-hhhcccccCCCcc--------cCcccc-----------------cccccccccHHHHHHHHHHh--cCCc
Confidence 122 2457999999885 233311 11124567899999999975 5578
Q ss_pred EEEEEecchhHHHHHH-hCCCcccccCeEEEecCCCCCCCCCCCccccCCCCcccCCCCCCHHHHHHHHhcCCceEEecc
Q 003794 564 ITILTNGPLTNLAQII-GLQNSSSVIQDVYIVGGNKGQDNEKGNVFTVPSSKYAEFNMFLDPLAAKAVFESKLEIKLIPL 642 (795)
Q Consensus 564 VtIla~GPLTNLA~al-~~P~i~~~I~~vviMGG~~~~~~~~GNv~~~~~~~~aEfN~~~DP~AA~iV~~s~~~itlipl 642 (795)
||||++|||||||.|+ ++|++.++|++||+|||++ ...||+. +.+|||+|+||+||++||+|++|++++||
T Consensus 121 vtiva~GplTNlA~al~~~P~~~~~i~~iviMGG~~---~~~Gn~~-----~~aE~N~~~DP~AA~~Vl~s~~~i~~vpl 192 (312)
T PF01156_consen 121 VTIVAIGPLTNLALALRRDPEIAKKIKRIVIMGGAF---DGPGNVT-----PVAEFNFYCDPEAAQIVLESGIPITLVPL 192 (312)
T ss_dssp EEEEECS-SHHHHHHHHHHGGHHGGEEEEEEE---S---SS--SSS-----SSC-HHHHHSHHHHHHHHCSSS-EEEE-H
T ss_pred EEEEecCcchhHHHHHHhChHHHhhceEEEEECCcc---ccCCCCC-----ccCCcCcccCHHHHHHHhhcCCCeEEEec
Confidence 9999999999999999 9999999999999999999 4579975 68999999999999999999999999999
Q ss_pred ccchhccccHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhcccccccCccccceeeeeee-ccCCccceeeEEEEEEEe
Q 003794 643 HMQRRVASFFKILHKLRDRKKTPESVFSQRLLQGLMTLQQSHHSYHHVDTFLGEVLGAVIL-GGNPHLNQTYKIKSLEII 721 (795)
Q Consensus 643 dvt~~~~~~~~~l~~l~~~~~tp~a~fl~~ll~~~~~~~~~~~~~~~~~~~l~D~Laaa~l-~~p~~l~~~~~~~~v~Ve 721 (795)
|+|+++.++++.+++|....++|.++|+.+++..|..+.+.. ..++.+||++|++++ ++| +++.+++..+++|+
T Consensus 193 dvt~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~D~la~~~~~~~P-~~~~~~~~~~v~V~ 267 (312)
T PF01156_consen 193 DVTHQVLLTPEFLDRLRAQSGSPLARFLRDLLRFYFDFYRDG----SDGFPLHDPLAAAYAELDP-ELFTEFERGPVDVE 267 (312)
T ss_dssp HHHTTSEEEHHHHHHHHHTCTCHHHHHHHHHHHHHHHHHHHH----SSSEE-HHHHHHHHH-H-G-GGEEEEEEEEEEEE
T ss_pred CccccccCCHHHHHHHHhcCcchHHHHHHHHHHHHHhhhhhc----cCCcccCCHHHHHHHHhCC-ccceecceEEEEEE
Confidence 999999999999999987444899999999999888766532 346899999999999 999 57656889999999
Q ss_pred ecCCcccceeEEEe---cCCCcceEEEeecCHHHHHHHHHHHHhc
Q 003794 722 SDGDISKVGQIIVN---QEQGKLVKVLESLNVAVYYDHFAEVLGD 763 (795)
Q Consensus 722 ~~g~~~t~G~tv~d---~~~~~~v~v~~~vD~~~f~~~l~~~L~~ 763 (795)
+++. .++|+|++| ...+++++|++++|.++|+++|+++|.+
T Consensus 268 ~~~~-~~~G~t~~d~~~~~~~~~~~v~~~vd~~~f~~~~~~~l~~ 311 (312)
T PF01156_consen 268 TDGG-LTRGQTVVDREGSSGGPNVRVATDVDVDAFFDLLLERLAR 311 (312)
T ss_dssp SSSS-TTTTEEEEETTSTTSSECEEEEEEE-HHHHHHHHHHHHHH
T ss_pred ECCC-CCCceEEEeccccCCCCcEEEeeecCHHHHHHHHHHHHhc
Confidence 9875 799999998 3567899999999999999999999875
No 12
>cd02654 nuc_hydro_CjNH nuc_hydro_CjNH. Nucleoside hydrolases similar to Campylobacter jejuni nucleoside hydrolase. This group contains eukaryotic and bacterial proteins similar to C. jejuni nucleoside hydrolase. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity. C. jejuni nucleoside hydrolase is inactive against natural nucleosides or against common nucleoside analogues.
Probab=100.00 E-value=5.9e-54 Score=467.52 Aligned_cols=303 Identities=24% Similarity=0.299 Sum_probs=242.5
Q ss_pred cEEEEcCCC----chHHHHHHHHHhCCCCceeEEEEE-EeCCCCchhHhHHHHHHHHHHhCCCCCcEeecccccccCCCC
Q 003794 408 PVVFDIDMS----AGDFLALIYLLKLPVELINLKGIL-VSSTGWATSATVDVVYDLLHMMGRDDIPVGLGDVFAVGEVNP 482 (795)
Q Consensus 408 kVIiDtD~g----~DDalAL~~lL~~p~~~idl~gIt-v~Gn~~~~~a~~~~a~~iL~~~Gr~dIPV~~Ga~~pl~~~~~ 482 (795)
|||||||+| +||++||+|||.+| ++||+||| |+||++.+++ .+|++++|+++||.|||||+|+..||.++..
T Consensus 1 kvIiDtD~G~~~d~DDa~Al~lal~~p--~~el~gIt~v~GN~~~~~~-~~Na~~ll~~~g~~dIPV~~Ga~~pl~~~~~ 77 (318)
T cd02654 1 KVILDNDIAMGRDTDDGLALALLLWSP--EVELLGLSAVSGNCWLSAV-TYNVLRMLELAGADAIPVYAGANTPLGRTNR 77 (318)
T ss_pred CEEEEcCCCCCCCccHHHHHHHHhhCC--CceEEEEEEecCCCCHHHH-HHHHHHHHHHhCCCCCCEEECCCccccCCcc
Confidence 699999999 99999999999999 89999999 7899998875 5799999999999999999999999976532
Q ss_pred CCCCCCCCCcccccccCCCCCCCccccccccCCCCCCccccccccccccCCCCCCCCCccCchhHHHHHHHHHHhcCCCC
Q 003794 483 KFPPIGGCKYAKAIPLGSGGFLDSDTLYGLARDLPRSPRRYTAENSVRFGASQDNDDPELRQPLAVDVWKSIVESIEPGS 562 (795)
Q Consensus 483 ~~p~~~~~~~~~~~~hG~dGlgd~~~~~g~~~~lP~~~~~~~~~~~~~~~~p~~~d~~~~~~~~A~~~~~~i~~~~~~~~ 562 (795)
.+ ......||.+|+++. .+|+....+..++ . ......+|+++|.+++++ ++ +
T Consensus 78 ~~-------~~~~~~~G~~g~~~~--------~~p~~~~~~~~~~---------~--~~~~~~~A~~~i~~~~~~-~p-~ 129 (318)
T cd02654 78 AF-------HAWESLYGAYLWQGA--------WSPEYSDMYTNAS---------I--IRNASIPAALFMIEMVRK-HP-H 129 (318)
T ss_pred cc-------ccccccCCCcccCCC--------CCCCccccccccc---------c--CCCCCccHHHHHHHHHHh-CC-C
Confidence 10 011235888888765 3554322211000 0 012346799999998886 44 6
Q ss_pred cEEEEEecchhHHHHHH-hCCCcccccCeEEEecCCCCCCCCCC-CccccCCCCcccCCCCCCHHHHHHHHhcCCceEEe
Q 003794 563 KITILTNGPLTNLAQII-GLQNSSSVIQDVYIVGGNKGQDNEKG-NVFTVPSSKYAEFNMFLDPLAAKAVFESKLEIKLI 640 (795)
Q Consensus 563 ~VtIla~GPLTNLA~al-~~P~i~~~I~~vviMGG~~~~~~~~G-Nv~~~~~~~~aEfN~~~DP~AA~iV~~s~~~itli 640 (795)
+||||++|||||||+|+ ++|++.++|++||+|||++ ...| |+++ .+.||||||+|||||++||+|++|++++
T Consensus 130 ~itiva~GPLTNlA~al~~~P~~~~~i~~iviMGG~~---~~~g~~~~~---~~~aEfN~~~DPeAA~iVl~s~~~~~~v 203 (318)
T cd02654 130 EVSIVAAGPLTNLALALRIDPDFAPLAKELVIMGGYL---DDIGEFVNR---HYASDFNLIMDPEAASIVLTAPWKSITI 203 (318)
T ss_pred ceEEEECCcHHHHHHHHHHChhHHHhCCEEEEeCCCc---cCCCCcCCC---CCCcceeeccCHHHHHHHHhCCCCEEEe
Confidence 99999999999999999 9999999999999999998 3345 5541 1379999999999999999999999999
Q ss_pred ccccchhccccHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhcccccccCccccceeeeeeeccCCccceeeEEE-EEE
Q 003794 641 PLHMQRRVASFFKILHKLRDRKKTPESVFSQRLLQGLMTLQQSHHSYHHVDTFLGEVLGAVILGGNPHLNQTYKIK-SLE 719 (795)
Q Consensus 641 pldvt~~~~~~~~~l~~l~~~~~tp~a~fl~~ll~~~~~~~~~~~~~~~~~~~l~D~Laaa~l~~p~~l~~~~~~~-~v~ 719 (795)
|||+|+++.++.++++++ ++.++|+.++++.|..+...... ...++++||++|++++++| +++ +++.. +|+
T Consensus 204 ~ldvT~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~hD~lava~~~~P-~l~-~~~~~~~v~ 275 (318)
T cd02654 204 PGNVTNRTCLTPEQIKAD-----DPLRDFIRETLDLPIDYAKEFVG-TGDGLPMWDELASAVALDP-ELA-TSSETFYID 275 (318)
T ss_pred CcccccceeCCHHHHhcc-----CHHHHHHHHHHHHHHHHHHHhcC-CCCCCCCchHHHHHHHcCH-hHc-cceEeEEEE
Confidence 999999999999988754 46788999999888776653211 1136889999999999999 576 34555 899
Q ss_pred EeecCCcccceeEEEecCC-------CcceEEEeecCHHHHHHHH
Q 003794 720 IISDGDISKVGQIIVNQEQ-------GKLVKVLESLNVAVYYDHF 757 (795)
Q Consensus 720 Ve~~g~~~t~G~tv~d~~~-------~~~v~v~~~vD~~~f~~~l 757 (795)
|++++. ++|+|++|+.. .+|++|+.++|.++|+++|
T Consensus 276 Ve~~~~--~~G~tv~d~~~~~~~~~~~~n~~v~~~vD~~~f~~~~ 318 (318)
T cd02654 276 VQTDSD--GGGQLIWPEDLLLAKGLRPYHVKVITAVDVAAFLNLI 318 (318)
T ss_pred EEeCCC--cCCeEEeecccCCCCCCCCCCCEEeecccHHHHHhhC
Confidence 998663 89999998642 2589999999999999864
No 13
>cd02647 nuc_hydro_TvIAG nuc_hydro_ TvIAG: Nucleoside hydrolases similar to the Inosine-adenosine-guanosine-preferring nucleoside hydrolase from Trypanosoma vivax. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. Nucleoside hydrolases vary in their substrate specificity. This group contains eukaryotic and bacterial proteins similar to the purine specific inosine-adenosine-guanosine-preferring nucleoside hydrolase (IAG-NH) from T. vivax. T. vivax IAG-NH is of the order of a thousand to ten thousand fold more specific towards the naturally occurring purine nucleosides, than towards the pyrimidine nucleosides.
Probab=100.00 E-value=1.7e-53 Score=461.73 Aligned_cols=292 Identities=32% Similarity=0.443 Sum_probs=238.5
Q ss_pred CcEEEEcCCCchHHHHHHHHHhCCCCceeEEEEE-E--eCCCCchhHhHHHHHHHHHHhCC-CCCcEeecccccccCCCC
Q 003794 407 KPVVFDIDMSAGDFLALIYLLKLPVELINLKGIL-V--SSTGWATSATVDVVYDLLHMMGR-DDIPVGLGDVFAVGEVNP 482 (795)
Q Consensus 407 kkVIiDtD~g~DDalAL~~lL~~p~~~idl~gIt-v--~Gn~~~~~a~~~~a~~iL~~~Gr-~dIPV~~Ga~~pl~~~~~ 482 (795)
||||||||+|+||++||+|||.+| ++||+||| | +||+..++ +.+|++++|+++|| .||||+.|+..||..
T Consensus 1 ~~vIiDtD~g~DDa~Al~~al~~p--~i~l~gIt~v~~~GN~~~~~-~~~na~~ll~~~g~~~dIPV~~Ga~~pL~~--- 74 (312)
T cd02647 1 KNVIFDHDGNVDDLVALLLLLKNE--KVDLKGIGVSGIDADCYVEP-AVSVTRKLIDRLGQRDAIPVGKGGSRAVNP--- 74 (312)
T ss_pred CCEEEeCCCCchHHHHHHHHhhCC--CcceEEEEEecCcCCccHHH-HHHHHHHHHHHhCCCCCCCEEeCCCcCccc---
Confidence 689999999999999999999999 89999999 6 69998776 46799999999999 899999999999932
Q ss_pred CCCCCCCCCcccccccCCCCCCCccccccccCCCCCCccccccccccccCCCCCCCCCccCchhHHHHHHHHHHhcCCCC
Q 003794 483 KFPPIGGCKYAKAIPLGSGGFLDSDTLYGLARDLPRSPRRYTAENSVRFGASQDNDDPELRQPLAVDVWKSIVESIEPGS 562 (795)
Q Consensus 483 ~~p~~~~~~~~~~~~hG~dGlgd~~~~~g~~~~lP~~~~~~~~~~~~~~~~p~~~d~~~~~~~~A~~~~~~i~~~~~~~~ 562 (795)
++. ....|+.+|+++.. .+. .+|... ......+|+++|.+++++ ++ +
T Consensus 75 -~~~-------~~~~~~~~g~~~~~--~~~--~~~~~~-------------------~~~~~~~a~~~i~~~~~~-~~-~ 121 (312)
T cd02647 75 -FPR-------SWRRDAAFSVDHLP--ILN--ERYTVE-------------------TPLAEETAQLVLIEKIKA-SL-E 121 (312)
T ss_pred -Ccc-------ccccccccCcCcCC--CCc--cccCCC-------------------CCcCcchHHHHHHHHHHh-CC-C
Confidence 110 11236656654321 000 111100 012346799999988885 44 7
Q ss_pred cEEEEEecchhHHHHHH-hCCCcccccCeEEEecCCCCCCCCCCCccccCCCCcccCCCCCCHHHHHHHHhcCCceEEec
Q 003794 563 KITILTNGPLTNLAQII-GLQNSSSVIQDVYIVGGNKGQDNEKGNVFTVPSSKYAEFNMFLDPLAAKAVFESKLEIKLIP 641 (795)
Q Consensus 563 ~VtIla~GPLTNLA~al-~~P~i~~~I~~vviMGG~~~~~~~~GNv~~~~~~~~aEfN~~~DP~AA~iV~~s~~~itlip 641 (795)
+||||++|||||||.|+ ++|++.++|++||||||++ ..+||++....++.||||+|+||+||++||+|+++++|+|
T Consensus 122 ~vtiva~GPLTNlA~al~~~P~~~~~i~~iviMGG~~---~~~GN~~~~~~tp~aEfNi~~DPeAA~iV~~s~~~i~~vp 198 (312)
T cd02647 122 PVTLLVTGPLTNLARALDSDPDISSNIEEVYIMGGGV---DAPGNVFTPPSNGTAEFNIFWDPLAAKTVFDSGLKITLVP 198 (312)
T ss_pred CEEEEEcccHHHHHHHHHHChHHHhhcCEEEEeCCcc---CCCCccccCCCCCCcccccccCHHHHHHHHhCCCCEEEEc
Confidence 99999999999999999 9999999999999999999 5679985444568999999999999999999999999999
Q ss_pred cccchhccccHH----HHHHHHhcCCCchHHHHHHHHHHHHHHHHhcccccccCccccceeeeeeeccCCccceeeEEEE
Q 003794 642 LHMQRRVASFFK----ILHKLRDRKKTPESVFSQRLLQGLMTLQQSHHSYHHVDTFLGEVLGAVILGGNPHLNQTYKIKS 717 (795)
Q Consensus 642 ldvt~~~~~~~~----~l~~l~~~~~tp~a~fl~~ll~~~~~~~~~~~~~~~~~~~l~D~Laaa~l~~p~~l~~~~~~~~ 717 (795)
||+|+++.++.+ +++++...+ +|.++|+.+++++|.++. ...++.+||++|++++++| +++ +++..+
T Consensus 199 ldvt~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~------~~~g~~~hD~lava~~~~p-~~~-~~~~~~ 269 (312)
T cd02647 199 LDATNTVPLTREFLETDRQRFAAQR-LPASDLAGQGYALVKPLE------FNSTYYMWDVLTTLVLGAK-EVD-NTKESL 269 (312)
T ss_pred cccccccccCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhhhc------CCCCccccHHHHHHHHcCc-hhc-cccccc
Confidence 999999999999 556666655 799999999999887654 1236789999999999999 465 566677
Q ss_pred -EEEeecCCcccceeEEEecCCCcceEEEeecCHHH
Q 003794 718 -LEIISDGDISKVGQIIVNQEQGKLVKVLESLNVAV 752 (795)
Q Consensus 718 -v~Ve~~g~~~t~G~tv~d~~~~~~v~v~~~vD~~~ 752 (795)
++|+++| .++|||++|.. ++|++|++++|.+.
T Consensus 270 ~v~Ve~~g--~t~G~Tv~d~~-~~n~~v~~~vd~~~ 302 (312)
T cd02647 270 ILEVDTDG--LSAGQTVTSPN-GRPLTLVTSNNSYG 302 (312)
T ss_pred ceEEEECC--CCCceEEEcCC-CCCeEEEEeeCccc
Confidence 8999987 39999999964 57999999999987
No 14
>cd00455 nuc_hydro nuc_hydro: Nucleoside hydrolases. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity. This group contains eukaryotic, bacterial and archeal proteins similar to the inosine-uridine preferring nucleoside hydrolase from Crithidia fasciculata, the xanthosine-inosine-uridine-adenosine-preferring nucleoside hydrolase RihC from Salmonella enterica serovar Typhimurium, the purine-specific inosine-adenosine-guanosine-preferring nucleoside hydrolase from Trypanosoma vivax and, pyrimidine-specific uridine-cytidine preferring nucleoside hydrolases such as URH1 from Saccharomyces cerevisiae, RihA and RihB from Escherichia coli. Nucleoside hydrolases are of interest as a target for antiprotozoan drugs as, no nucleoside hydrolase activity or genes encoding these enzymes have been detected in humans and, parasitic protozoans lack de novo purine synthesis relying on nucleosid
Probab=100.00 E-value=5.9e-53 Score=455.77 Aligned_cols=290 Identities=25% Similarity=0.316 Sum_probs=245.2
Q ss_pred EEEEcCCCchHHHHHHHHHhCCCCceeEEEEE-EeCCCCchhHhHHHHHHHHHHhCCCCCcEeecccccccCCCCCCCCC
Q 003794 409 VVFDIDMSAGDFLALIYLLKLPVELINLKGIL-VSSTGWATSATVDVVYDLLHMMGRDDIPVGLGDVFAVGEVNPKFPPI 487 (795)
Q Consensus 409 VIiDtD~g~DDalAL~~lL~~p~~~idl~gIt-v~Gn~~~~~a~~~~a~~iL~~~Gr~dIPV~~Ga~~pl~~~~~~~p~~ 487 (795)
||||||+|+||++||+|||.+| +++|+||| |.||++.++ +++|++++|+++|+.+|||++|+..|+..+..
T Consensus 1 vIiDtD~g~DDa~Al~~~l~~~--~~~l~gIt~~~Gn~~~~~-~~~n~~~~l~~~g~~~iPV~~G~~~pl~~~~~----- 72 (295)
T cd00455 1 VILDTDPGIDDAFALMYALLHP--EIELVGIVATYGNVTLEQ-ATQNAAYLLELLGRLDIPVYAGATRPLTGEIP----- 72 (295)
T ss_pred CEEeCCCCHHHHHHHHHHhcCC--CceEEEEEeccCCccHHH-HHHHHHHHHHHhCCCCCCEeCCCCCCCCCCCC-----
Confidence 6999999999999999999999 89999999 789998776 46899999999999999999999999976421
Q ss_pred CCCCcccccccCCCCCCCccccccccCCCCCCccccccccccccCCCCCCCCCccCchhHHHHHHHHHHhcCCCCcEEEE
Q 003794 488 GGCKYAKAIPLGSGGFLDSDTLYGLARDLPRSPRRYTAENSVRFGASQDNDDPELRQPLAVDVWKSIVESIEPGSKITIL 567 (795)
Q Consensus 488 ~~~~~~~~~~hG~dGlgd~~~~~g~~~~lP~~~~~~~~~~~~~~~~p~~~d~~~~~~~~A~~~~~~i~~~~~~~~~VtIl 567 (795)
......||.+|.+. .+.. . ...+.++|+++|.+++++ ++ ++|+||
T Consensus 73 ----~~~~~~~g~~g~~~----------~~~~-~------------------~~~~~~~a~~~i~~~~~~-~~-~~v~il 117 (295)
T cd00455 73 ----AAYPEIHGEGGLGL----------PIPP-I------------------IEADDPEAVQLLIDLIRK-YP-DEITIV 117 (295)
T ss_pred ----CCCcccCCCCCCCC----------CCCC-C------------------CcCCCcCHHHHHHHHHHh-cC-CCeEEE
Confidence 11234588777311 1111 0 013456799999988886 34 589999
Q ss_pred EecchhHHHHHH-hCCCcccccCeEEEecCCCCCCCCCCCccccCCCCcccCCCCCCHHHHHHHHhcCCceEEeccccch
Q 003794 568 TNGPLTNLAQII-GLQNSSSVIQDVYIVGGNKGQDNEKGNVFTVPSSKYAEFNMFLDPLAAKAVFESKLEIKLIPLHMQR 646 (795)
Q Consensus 568 a~GPLTNLA~al-~~P~i~~~I~~vviMGG~~~~~~~~GNv~~~~~~~~aEfN~~~DP~AA~iV~~s~~~itlipldvt~ 646 (795)
++|||||||.|+ ++|++.++|++||+|||++ ..+||++ +.||||+|+||+||++||+|+++++++|||+|+
T Consensus 118 a~GplTNlA~al~~~p~~~~~i~~iviMGG~~---~~~Gn~~-----~~aEfN~~~DP~AA~~Vl~s~~~i~~vpldvt~ 189 (295)
T cd00455 118 ALGPLTNLAMAFILDPDIKDRVKEIVIMGGAF---LVPGNVT-----PVAEANFYGDPEAANIVFNSAKNLTIVPLDVTN 189 (295)
T ss_pred ECCchHHHHHHHHHChHHHHhCCEEEEcCCcc---CCCCCCC-----ccchhhcccCHHHHHHHHhCCCCeEEeccccee
Confidence 999999999999 9999999999999999999 4679987 589999999999999999999999999999999
Q ss_pred hccccHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhcccccccCccccceeeeeeeccCCccceeeEEEEEEEeecCCc
Q 003794 647 RVASFFKILHKLRDRKKTPESVFSQRLLQGLMTLQQSHHSYHHVDTFLGEVLGAVILGGNPHLNQTYKIKSLEIISDGDI 726 (795)
Q Consensus 647 ~~~~~~~~l~~l~~~~~tp~a~fl~~ll~~~~~~~~~~~~~~~~~~~l~D~Laaa~l~~p~~l~~~~~~~~v~Ve~~g~~ 726 (795)
++.++++++++|...+ ++.++|+.+++.+|..+.+. +...++.+||++|++++++| +++ +++..+++|+++|
T Consensus 190 ~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~D~lAv~~~~~P-~~~-~~~~~~v~V~~~g-- 261 (295)
T cd00455 190 QAVLTPPMVERIFEQG-TSIGLLIKPMIDYYYKAYQK---PGIEGSPIHDPLAVAYLLNP-SMF-DYSKVPVDVDTDG-- 261 (295)
T ss_pred eEeCCHHHHHHHHHhC-CcHHHHHHHHHHHHHHHHhc---CCCCcCCCChHHHHHHhcCc-ccE-EEEEEeEEEEeCC--
Confidence 9999999999998765 78999999999888765543 22346889999999999999 566 5677999999987
Q ss_pred ccceeEEEecCC---CcceEEEeecCHHHHHHHH
Q 003794 727 SKVGQIIVNQEQ---GKLVKVLESLNVAVYYDHF 757 (795)
Q Consensus 727 ~t~G~tv~d~~~---~~~v~v~~~vD~~~f~~~l 757 (795)
.++|+|++|+.+ .++++|+.++|.++|++.|
T Consensus 262 ~~~G~t~~d~~~~~~~~~~~v~~~~d~~~f~~~~ 295 (295)
T cd00455 262 LTRGQTIADFRENPGNGVTRVAVNLDYPDFIELI 295 (295)
T ss_pred CCCceEEEecccCCCCCCcEEEEecCHHHHHhhC
Confidence 699999999654 3689999999999999764
No 15
>cd02648 nuc_hydro_1 NH_1: A subgroup of nucleoside hydrolases. This group contains fungal proteins similar to nucleoside hydrolases. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity.
Probab=100.00 E-value=5.9e-51 Score=443.35 Aligned_cols=290 Identities=22% Similarity=0.278 Sum_probs=226.5
Q ss_pred CCcEEEEcCCCchHHHHHHHHHhCCCCc-eeEEEEE-EeCCCCchhHhHHHHHHHHHHhCCC------------------
Q 003794 406 GKPVVFDIDMSAGDFLALIYLLKLPVEL-INLKGIL-VSSTGWATSATVDVVYDLLHMMGRD------------------ 465 (795)
Q Consensus 406 ~kkVIiDtD~g~DDalAL~~lL~~p~~~-idl~gIt-v~Gn~~~~~a~~~~a~~iL~~~Gr~------------------ 465 (795)
++|||||||+|+||++||+|||.+| + ++|+||| |+||+..+++ .+|++++|+++||.
T Consensus 1 p~kiIiDtDpG~DDa~AillAl~~p--~~~ev~gITtv~GN~~~~~~-~~Nal~~l~~~gr~~~~~~~~~~~~~~~~~~~ 77 (367)
T cd02648 1 PHPIIIDTDPGVDDVLAILLALSSP--EEVDVALISLTFGNTTLDHA-LRNVLRLFHVLERERAWRATPGVRYRAFSADA 77 (367)
T ss_pred CCeEEEECCCCHHHHHHHHHHHhCC--CCcEEEEEEecCCCcCHHHH-HHHHHHHHHHhCCcccccccccccccccccCC
Confidence 3689999999999999999999999 7 9999999 8899998875 57999999999997
Q ss_pred CCc-EeecccccccCCCCCCCCCCCCCcccccccCCCCCCCccccccccCCC-CCC-ccccccccccccCCCCCCCCCcc
Q 003794 466 DIP-VGLGDVFAVGEVNPKFPPIGGCKYAKAIPLGSGGFLDSDTLYGLARDL-PRS-PRRYTAENSVRFGASQDNDDPEL 542 (795)
Q Consensus 466 dIP-V~~Ga~~pl~~~~~~~p~~~~~~~~~~~~hG~dGlgd~~~~~g~~~~l-P~~-~~~~~~~~~~~~~~p~~~d~~~~ 542 (795)
+|| |+.|+..||.++. . ....+||.+||++.. .+ |.. +.. + ..|.-...-.+
T Consensus 78 ~iP~V~~Ga~~PL~~~~---------~-~a~~~HG~dGlgg~~-------~~~p~~~p~~----~----~~~~~~~~~~~ 132 (367)
T cd02648 78 EKPIVASGSDQPLEGER---------L-TASYFHGRDGLSGVH-------WLHPDFTPVE----T----WIPEIVAPLTP 132 (367)
T ss_pred CCCEEEcCCCcccCCCC---------c-ccCccCCCCCCCCcc-------ccCCcccccc----c----cccccccccCc
Confidence 699 9999999996642 1 224579999999862 11 211 000 0 00000000012
Q ss_pred CchhHHHHHHHHHHhcCCCCcEEEEEecchhHHHHHH-hCCCcccccCeEEEecCCCCCCCCCCCccccCCCCcccCCCC
Q 003794 543 RQPLAVDVWKSIVESIEPGSKITILTNGPLTNLAQII-GLQNSSSVIQDVYIVGGNKGQDNEKGNVFTVPSSKYAEFNMF 621 (795)
Q Consensus 543 ~~~~A~~~~~~i~~~~~~~~~VtIla~GPLTNLA~al-~~P~i~~~I~~vviMGG~~~~~~~~GNv~~~~~~~~aEfN~~ 621 (795)
...+|+++|.+++++ +++++|+||++|||||||+|+ ++|++.++|++||+|||++ ..+||++ +.+|||+|
T Consensus 133 ~~~~A~~~i~~~~~~-~p~~~itivalGPLTNiA~al~~~P~~~~~Ik~IviMGG~~---~~~GN~t-----p~aEfNi~ 203 (367)
T cd02648 133 SDKPAYDVILDILRE-EPDHTVTIAALGPLTNLAAAARKDPETFAKVGEVVVMGGAI---DVPGNTS-----PVAEFNCF 203 (367)
T ss_pred CCccHHHHHHHHHHh-CCCCcEEEEEcccHHHHHHHHHHChHHHhhhcEEEEeCCcc---cCCCCCC-----ccchhhcc
Confidence 356799999988886 555679999999999999999 9999999999999999999 4579987 58999999
Q ss_pred CCHHHHHHHHhc----------CCceEEeccccchhccccHHHH-----HHHHh--cCCCchHHHHHHHH-----HHHHH
Q 003794 622 LDPLAAKAVFES----------KLEIKLIPLHMQRRVASFFKIL-----HKLRD--RKKTPESVFSQRLL-----QGLMT 679 (795)
Q Consensus 622 ~DP~AA~iV~~s----------~~~itlipldvt~~~~~~~~~l-----~~l~~--~~~tp~a~fl~~ll-----~~~~~ 679 (795)
+||+||++||++ +++++|+|||+|+++.++.+++ +.++. .+ ++.++|+.+++ .+|++
T Consensus 204 ~DPeAA~iV~~~~~~~~~~s~~~~~i~mvpLDvT~~~~l~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 282 (367)
T cd02648 204 ADPYAAAVVIDEPPSTAPEARRKLPLQVFPLDITTGHTLPYSSLFATYVTPRDAPERG-SPLARWLEHVFISTFLTHPRA 282 (367)
T ss_pred cCHHHHHHHHhccccccccccCCCCeEEEeecCCCCeeeCHHHhhhhHHHHHHhhccC-CchHHHHHHHHHHHHHHHHHH
Confidence 999999999984 5699999999999999998774 44554 33 78999655544 46766
Q ss_pred HHHhcccccccCc---cccceeeeeeeccCCc---------cceeeEEEEEEEeecCCcccceeEEEecC
Q 003794 680 LQQSHHSYHHVDT---FLGEVLGAVILGGNPH---------LNQTYKIKSLEIISDGDISKVGQIIVNQE 737 (795)
Q Consensus 680 ~~~~~~~~~~~~~---~l~D~Laaa~l~~p~~---------l~~~~~~~~v~Ve~~g~~~t~G~tv~d~~ 737 (795)
+..+. +...++ .+||++|++++++|+. ++ +++..+++||++|+ ++||+||+|+.
T Consensus 283 ~~~~~--~~~~g~~~~~lHD~lava~~i~p~~~~~~~~~~~~~-~~~~~~v~Ve~~g~-~trG~tV~D~~ 348 (367)
T cd02648 283 FTPEE--FLPDRSELFEMHDPLAVWYAIFADMPATGSIDGNGW-KHTPRDFRVETSGQ-WTRGMCVVDRR 348 (367)
T ss_pred HHHhh--cCCCCccCCCCCcHHHhHhhcCcccccccccccceE-EEEEecEEEEeCCC-CCCceEEEecC
Confidence 65432 111233 7999999999999941 44 56789999999985 89999999954
No 16
>COG1957 URH1 Inosine-uridine nucleoside N-ribohydrolase [Nucleotide transport and metabolism]
Probab=100.00 E-value=3e-48 Score=414.45 Aligned_cols=217 Identities=28% Similarity=0.419 Sum_probs=198.5
Q ss_pred CCCCCCccccCCCCCCCCCCccCCCCCCCCcccccCCcccccccccccccCCCCCCCcCCCCCCCCCCCCCCCCCCCCCC
Q 003794 2 MNRDDIPVGVGGEGGILPNGTILPDVGGYQPIIDQGMSTAGECRYRQAIPVGQRLYVNTNYGLRKAFLPQGGRKYAPLRQ 81 (795)
Q Consensus 2 ~gr~dIPV~~Ga~~pl~~~~~~~~~v~g~~~~~~~g~~t~~~c~y~~~ip~~~~~~~hG~~Glg~~~lp~~~~~~~~~~~ 81 (795)
+||.|||||.|+.+||+++..+++ ++||.+||++..+|++..+ ++.
T Consensus 56 ~g~~~iPV~~Ga~~Pl~r~~~~a~-------------------------------~iHG~~Gl~~~~lp~~~~~---~~~ 101 (311)
T COG1957 56 LGRADIPVYAGAARPLLREPITAP-------------------------------EIHGESGLGGPELPEPTRK---LES 101 (311)
T ss_pred cCCCCCCeecCCCCCcCCCCcchh-------------------------------hhcCCcCCCCCCCCccccc---ccC
Confidence 789999999999999999887554 4566999999989988664 345
Q ss_pred ccHHHHHHHHhc--cCCeEEEEecchHHHHHHHHhCCchhhccCcEEEecCCCCCCCCCCCCCCCccccCCCCCCCCCCC
Q 003794 82 PTAQQVLINAIS--AGPITVFVMGSHTNFAIFLMNNPHLKKNIEHIYVMGGAIRSDCFNSTNSSQSEQCDSIGNLYPDDS 159 (795)
Q Consensus 82 ~~Av~~li~~i~--~g~itlvaiGPLTNlA~al~~~P~l~~~ik~IviMGG~~~~~~~~~~~~~~~~~~~~~GN~~~~~~ 159 (795)
.+|+++|+|+++ +|+|||+++|||||||+|++++|+++++||+||||||++.. +|| +
T Consensus 102 ~~A~~~ii~~l~~~~g~vtlva~GPLTNiAlAl~~~P~i~~~ik~iviMGGa~~~----------------~GN-----v 160 (311)
T COG1957 102 KHAVDAIIDTLMANPGEVTLVATGPLTNIALALRKDPEIAKRIKEIVIMGGAFFV----------------PGN-----V 160 (311)
T ss_pred CcHHHHHHHHHHhCCCcEEEEecCChHHHHHHHHhCcchhhhhcEEEEecCccCC----------------CCC-----c
Confidence 899999999997 58999999999999999999999999999999999999987 499 7
Q ss_pred CCCCccCCCCCHHHHHHHHhcCCCEEEecCCCccccCCCHHHHHHHHHhcCChHHHHHHHHHHHHHHhhcCCCCCCCCCc
Q 003794 160 NPYAEFNIFSDPFAAYTVLHSGIPVTIIPLDATKTIPVSENFFVEFERRQNTYEAQYCFQSLKMIRDTWSGSPPFHEAYC 239 (795)
Q Consensus 160 tp~AEfN~~~DPeAA~iVl~sg~pitlVplDvT~~~~lt~~~~~~l~~~~~t~~a~~l~~~l~~~~~~~~~~~~~~~~~~ 239 (795)
||.||||||+|||||++||+||+|++|||||+|+|+..+++.++++++. +++.++++.+++.+|.+++.+. .+..|.+
T Consensus 161 tp~AEfNi~~DPeAA~iVf~sg~~i~mv~LdvT~q~~~t~~~~~~~~~~-~~~~~~~~~d~l~~~~~~~~~~-~g~~g~~ 238 (311)
T COG1957 161 TPAAEFNIWVDPEAAKIVFTSGWPITMVPLDVTHQVLLTPDVLARLRAA-GGPAAELVADLLDFYLAYYKSR-QGLDGAP 238 (311)
T ss_pred CcchhhhhccCHHHHHHHHhCCCceEEechhhhhhhcCCHHHHHHHHHh-CCccHHHHHHHHHHHHHHHhhc-cCCCCCC
Confidence 9999999999999999999999999999999999999999999999985 5678899999999999888765 4568999
Q ss_pred ccccchHhHHhhhccCCCCCCCCCCccceEEEEEEEEecCc-cccccC
Q 003794 240 MWDSFMAGVALSIMLNSSSHNGENACSEMEYMNLTVVTSNE-PYGISD 286 (795)
Q Consensus 240 l~D~lA~a~al~p~~~~~~~~~~p~~~~~~~~~v~V~t~g~-~~G~~~ 286 (795)
+||++|++++++ |+++++++.+|+|++.|. ++|+|.
T Consensus 239 ~hD~~a~a~l~~-----------p~l~~~~~~~V~Ve~~~~lt~G~Tv 275 (311)
T COG1957 239 LHDPLAVAYLLD-----------PELFTTREANVDVETAGGLTRGMTV 275 (311)
T ss_pred cccHHHHHHHhC-----------hhhhcceEEEEEEEeCCCCcCcceE
Confidence 999999999999 499999999999999985 999984
No 17
>PRK09955 rihB ribonucleoside hydrolase 2; Provisional
Probab=100.00 E-value=2.2e-45 Score=398.89 Aligned_cols=215 Identities=24% Similarity=0.322 Sum_probs=191.4
Q ss_pred CCCCCCccccCCCCCCCCCCccCCCCCCCCcccccCCcccccccccccccCCCCCCCcCCCCCCCCCCCCCCCCCCCCCC
Q 003794 2 MNRDDIPVGVGGEGGILPNGTILPDVGGYQPIIDQGMSTAGECRYRQAIPVGQRLYVNTNYGLRKAFLPQGGRKYAPLRQ 81 (795)
Q Consensus 2 ~gr~dIPV~~Ga~~pl~~~~~~~~~v~g~~~~~~~g~~t~~~c~y~~~ip~~~~~~~hG~~Glg~~~lp~~~~~~~~~~~ 81 (795)
+|| |||||+|++.||+++... +.++||.+|||+..+|++... .++
T Consensus 57 ~g~-~IPV~~Ga~~PL~~~~~~-------------------------------~~~~HG~~Glg~~~~~~~~~~---~~~ 101 (313)
T PRK09955 57 LEI-NVPVYAGMPQPIMRQQIV-------------------------------ADNIHGETGLDGPVFEPLTRQ---AES 101 (313)
T ss_pred hCC-CCCEEeCCCCCCCCCCCC-------------------------------ccccCCCCCCCCCCCCCcccc---cCC
Confidence 687 799999999999986432 236788999999988876543 456
Q ss_pred ccHHHHHHHHhc--cCCeEEEEecchHHHHHHHHhCCchhhccCcEEEecCCCCCCCCCCCCCCCccccCCCCCCCCCCC
Q 003794 82 PTAQQVLINAIS--AGPITVFVMGSHTNFAIFLMNNPHLKKNIEHIYVMGGAIRSDCFNSTNSSQSEQCDSIGNLYPDDS 159 (795)
Q Consensus 82 ~~Av~~li~~i~--~g~itlvaiGPLTNlA~al~~~P~l~~~ik~IviMGG~~~~~~~~~~~~~~~~~~~~~GN~~~~~~ 159 (795)
++|+++|+++++ +++||||++|||||||+|++++|+++++||+||||||++.. || .
T Consensus 102 ~~A~~~i~~~~~~~p~eitiva~GPLTNlA~al~~~P~~~~~i~~iviMGG~~~~-----------------GN-----~ 159 (313)
T PRK09955 102 THAVKYIIDTLMASDGDITLVPVGPLSNIAVAMRMQPAILPKIREIVLMGGAYGT-----------------GN-----F 159 (313)
T ss_pred CcHHHHHHHHHHhCCCCEEEEEcCcHHHHHHHHHHChHHHHhCCEEEEeCCCCCC-----------------CC-----C
Confidence 799999999997 58999999999999999999999999999999999999853 99 7
Q ss_pred CCCCccCCCCCHHHHHHHHhcCCCEEEecCCCccccCCCHHHHHHHHHhcCChHHHHHHHHHHHHHHhhcCCCCCCCCCc
Q 003794 160 NPYAEFNIFSDPFAAYTVLHSGIPVTIIPLDATKTIPVSENFFVEFERRQNTYEAQYCFQSLKMIRDTWSGSPPFHEAYC 239 (795)
Q Consensus 160 tp~AEfN~~~DPeAA~iVl~sg~pitlVplDvT~~~~lt~~~~~~l~~~~~t~~a~~l~~~l~~~~~~~~~~~~~~~~~~ 239 (795)
+|.||||||+|||||++||+|++|++|||||+|+++.++++++++|... +++.++++.+++.+|.+.+.+. .+..+++
T Consensus 160 tp~aEfN~~~DPeAA~iV~~s~~~i~~v~lDvT~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~-~g~~g~~ 237 (313)
T PRK09955 160 TPSAEFNIFADPEAARVVFTSGVPLVMMGLDLTNQTVCTPDVIARMERA-GGPAGELFSDIMNFTLKTQFEN-YGLAGGP 237 (313)
T ss_pred CCCeeeccccCHHHHHHHHhCCCCEEEeccccccceecCHHHHHHHHhc-CChHHHHHHHHHHHHHHHHHhh-cCCCCCc
Confidence 9999999999999999999999999999999999999999999999874 5789999999999888766543 4457899
Q ss_pred ccccchHhHHhhhccCCCCCCCCCCccceEEEEEEEEecCc-cccccC
Q 003794 240 MWDSFMAGVALSIMLNSSSHNGENACSEMEYMNLTVVTSNE-PYGISD 286 (795)
Q Consensus 240 l~D~lA~a~al~p~~~~~~~~~~p~~~~~~~~~v~V~t~g~-~~G~~~ 286 (795)
+||++|++++++| ++++.++++|+|++.|. +||+|.
T Consensus 238 lhD~la~a~~~~P-----------~l~~~~~~~v~Ve~~g~~t~G~tv 274 (313)
T PRK09955 238 VHDATCIGYLINP-----------DGIKTQEMYVEVDVNSGPCYGRTV 274 (313)
T ss_pred cChHHHHHHHcCh-----------hhEEEEEeeEEEEeCCCCCCceEE
Confidence 9999999999994 99999999999999865 899985
No 18
>PLN02717 uridine nucleosidase
Probab=100.00 E-value=3.4e-45 Score=398.47 Aligned_cols=220 Identities=26% Similarity=0.320 Sum_probs=194.4
Q ss_pred CCCCCCCccccCCCCCCCCCCccCCCCCCCCcccccCCcccccccccccccCCCCCCCcCCCCCCCCCCCCCCCCCCCCC
Q 003794 1 MMNRDDIPVGVGGEGGILPNGTILPDVGGYQPIIDQGMSTAGECRYRQAIPVGQRLYVNTNYGLRKAFLPQGGRKYAPLR 80 (795)
Q Consensus 1 ~~gr~dIPV~~Ga~~pl~~~~~~~~~v~g~~~~~~~g~~t~~~c~y~~~ip~~~~~~~hG~~Glg~~~lp~~~~~~~~~~ 80 (795)
++||.|||||+|+..||.++... ..+.++||.+|||+..+|.+.. +.+
T Consensus 53 ~~g~~diPV~~Ga~~pl~~~~~~-----------------------------~~~~~~hG~dGlg~~~~p~~~~---~~~ 100 (316)
T PLN02717 53 MAGRPDVPVAEGSHEPLKGGTKP-----------------------------RIADFVHGSDGLGNTNLPPPKG---KKI 100 (316)
T ss_pred HcCCCCCCEEeCCCCCCCCCCCC-----------------------------cCCccCCCCCCCCCCCCCCCCC---CcC
Confidence 47999999999999999875210 0124678899999998887654 345
Q ss_pred CccHHHHHHHHhc--cCCeEEEEecchHHHHHHHHhCCchhhccCcEEEecCCCCCCCCCCCCCCCccccCCCCCCCCCC
Q 003794 81 QPTAQQVLINAIS--AGPITVFVMGSHTNFAIFLMNNPHLKKNIEHIYVMGGAIRSDCFNSTNSSQSEQCDSIGNLYPDD 158 (795)
Q Consensus 81 ~~~Av~~li~~i~--~g~itlvaiGPLTNlA~al~~~P~l~~~ik~IviMGG~~~~~~~~~~~~~~~~~~~~~GN~~~~~ 158 (795)
.++|+++|+++++ +++||||++|||||||+|++++|+++++||+||||||++.. +||
T Consensus 101 ~~~A~~~i~~~~~~~~~~itiva~GPLTNlA~al~~~P~~~~~ik~iviMGG~~~~----------------~GN----- 159 (316)
T PLN02717 101 EKSAAEFLVEKVSEYPGEVTVVALGPLTNLALAIKLDPSFAKKVGQIVVLGGAFFV----------------NGN----- 159 (316)
T ss_pred CCCHHHHHHHHHHhCCCCEEEEECCcHHHHHHHHHHChHHHhhcCEEEEeCCCcCC----------------CCC-----
Confidence 7899999999997 58999999999999999999999999999999999999875 499
Q ss_pred CCCCCccCCCCCHHHHHHHHhcCCCEEEecCCCccccCCCHHHHHHHHHhcCChHHHHHHHHHHHHHHhhcCCCCCCCCC
Q 003794 159 SNPYAEFNIFSDPFAAYTVLHSGIPVTIIPLDATKTIPVSENFFVEFERRQNTYEAQYCFQSLKMIRDTWSGSPPFHEAY 238 (795)
Q Consensus 159 ~tp~AEfN~~~DPeAA~iVl~sg~pitlVplDvT~~~~lt~~~~~~l~~~~~t~~a~~l~~~l~~~~~~~~~~~~~~~~~ 238 (795)
.+|.||||||+|||||++||+|++|++|||||+|+++.++.+++++|.+. +++.++|+.+++++|++.+.+. .+..++
T Consensus 160 ~tp~aEfN~~~DPeAA~iVl~s~~~i~~v~ldvt~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 237 (316)
T PLN02717 160 VNPAAEANIFGDPEAADIVFTSGADITVVGINVTTQVVLTDADLEELRDS-KGKYAQFLCDICKFYRDWHRKS-YGIDGI 237 (316)
T ss_pred CCchhhhhhhcCHHHHHHHHhCCCCeEEEcccccCceecCHHHHHHHHHc-CChHHHHHHHHHHHHHHHHHhh-cCCCcc
Confidence 79999999999999999999999999999999999999999999999874 5789999999999988766543 456789
Q ss_pred cccccchHhHHhhhccCCCCCCCCCCccceEEEEEEEEecCccccccC
Q 003794 239 CMWDSFMAGVALSIMLNSSSHNGENACSEMEYMNLTVVTSNEPYGISD 286 (795)
Q Consensus 239 ~l~D~lA~a~al~p~~~~~~~~~~p~~~~~~~~~v~V~t~g~~~G~~~ 286 (795)
++||++|++++++ |++++.++.+|+|+++|.+||+|.
T Consensus 238 ~~~D~la~a~~~~-----------P~~~~~~~~~v~Ve~~g~trG~tv 274 (316)
T PLN02717 238 YLHDPTALLAAVR-----------PSLFTYKEGVVRVETEGICRGLTL 274 (316)
T ss_pred cCCcHHHhHHhcC-----------ccceEEEEecEEEEeCCCCCceEe
Confidence 9999999999999 599999999999999988999985
No 19
>PRK10443 rihA ribonucleoside hydrolase 1; Provisional
Probab=100.00 E-value=1.2e-44 Score=393.44 Aligned_cols=218 Identities=27% Similarity=0.339 Sum_probs=193.1
Q ss_pred CCCCCCCccccCCCCCCCCCCccCCCCCCCCcccccCCcccccccccccccCCCCCCCcCCCCCCCCCCCCCCCCCCCCC
Q 003794 1 MMNRDDIPVGVGGEGGILPNGTILPDVGGYQPIIDQGMSTAGECRYRQAIPVGQRLYVNTNYGLRKAFLPQGGRKYAPLR 80 (795)
Q Consensus 1 ~~gr~dIPV~~Ga~~pl~~~~~~~~~v~g~~~~~~~g~~t~~~c~y~~~ip~~~~~~~hG~~Glg~~~lp~~~~~~~~~~ 80 (795)
++||.|||||+|++.||.++... +.++||.+|+++..+|++.. +.+
T Consensus 55 ~~g~~diPV~~Ga~~pl~~~~~~-------------------------------~~~~hG~~Gl~~~~~p~~~~---~~~ 100 (311)
T PRK10443 55 LLNRTDIPVAGGAVKPLMRELII-------------------------------ADNVHGESGLDGPALPEPTF---APQ 100 (311)
T ss_pred HhCCCCCcEEeCCCCCCCCCCcC-------------------------------ccccCCCCCCCCCCCCCCcc---CCC
Confidence 47999999999999999875432 24678899999988877654 245
Q ss_pred CccHHHHHHHHhc--cCCeEEEEecchHHHHHHHHhCCchhhccCcEEEecCCCCCCCCCCCCCCCccccCCCCCCCCCC
Q 003794 81 QPTAQQVLINAIS--AGPITVFVMGSHTNFAIFLMNNPHLKKNIEHIYVMGGAIRSDCFNSTNSSQSEQCDSIGNLYPDD 158 (795)
Q Consensus 81 ~~~Av~~li~~i~--~g~itlvaiGPLTNlA~al~~~P~l~~~ik~IviMGG~~~~~~~~~~~~~~~~~~~~~GN~~~~~ 158 (795)
+++|+++|+++++ +|+||||++|||||||+|++++|++.++||+||||||++.. ||
T Consensus 101 ~~~a~~~i~~~~~~~~~~itiva~GPLTNlA~al~~~P~~~~~i~~iviMGG~~~~-----------------Gn----- 158 (311)
T PRK10443 101 NCTAVELMAKTLRESAEPVTLVSTGPQTNVALLLASHPELHSKIARIVIMGGAMGL-----------------GN----- 158 (311)
T ss_pred CccHHHHHHHHHHhCCCCeEEEEccchHHHHHHHHHCchhhhhhCEEEEccCCCCC-----------------CC-----
Confidence 6799999999997 58999999999999999999999999999999999999864 99
Q ss_pred CCCCCccCCCCCHHHHHHHHhcCCCEEEecCCCccccCCCHHHHHHHHHhcCChHHHHHHHHHHHHHHhhcCCCCCCCCC
Q 003794 159 SNPYAEFNIFSDPFAAYTVLHSGIPVTIIPLDATKTIPVSENFFVEFERRQNTYEAQYCFQSLKMIRDTWSGSPPFHEAY 238 (795)
Q Consensus 159 ~tp~AEfN~~~DPeAA~iVl~sg~pitlVplDvT~~~~lt~~~~~~l~~~~~t~~a~~l~~~l~~~~~~~~~~~~~~~~~ 238 (795)
.+|.||||||+|||||++||+|++|++|||||+|+++.++.+++++|... +++.++|+.+++.+|.+.|.....+..++
T Consensus 159 ~~~~aEfN~~~DPeAA~~Vl~s~~~i~~vpldvt~~~~~t~~~~~~l~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~g~ 237 (311)
T PRK10443 159 WTPAAEFNIYVDPEAAEIVFQSGIPIVMAGLDVTHKAQIMDEDIERIRAI-GNPVATIVAELLDFFMEYHKDEKWGFVGA 237 (311)
T ss_pred CCcchhhccCcCHHHHHHHHhCCCCEEEecccccceeecCHHHHHHHHhc-CChHHHHHHHHHHHHHHHhHhhhCCCCCC
Confidence 79999999999999999999999999999999999999999999999874 68999999999998877665322445789
Q ss_pred cccccchHhHHhhhccCCCCCCCCCCccceEEEEEEEEecCc-cccccC
Q 003794 239 CMWDSFMAGVALSIMLNSSSHNGENACSEMEYMNLTVVTSNE-PYGISD 286 (795)
Q Consensus 239 ~l~D~lA~a~al~p~~~~~~~~~~p~~~~~~~~~v~V~t~g~-~~G~~~ 286 (795)
++||++|++++++ |+++++++++|+|++.|. +||+|.
T Consensus 238 ~lhD~lava~~~~-----------P~~~~~~~~~v~Ve~~g~~trG~tv 275 (311)
T PRK10443 238 PLHDPCTIAWLLK-----------PELFTTVERWVGVETQGEYTQGMTV 275 (311)
T ss_pred CCCCHHHhHHhcC-----------cceEEEEEeCEEEEcCCCCCCceEE
Confidence 9999999999999 599999999999999987 899884
No 20
>PRK10768 ribonucleoside hydrolase RihC; Provisional
Probab=100.00 E-value=4.8e-44 Score=387.77 Aligned_cols=211 Identities=25% Similarity=0.344 Sum_probs=187.8
Q ss_pred CCCCCCCccccCCCCCCCCCCccCCCCCCCCcccccCCcccccccccccccCCCCCCCcCCCCCCCCCCCCCCCCCCCCC
Q 003794 1 MMNRDDIPVGVGGEGGILPNGTILPDVGGYQPIIDQGMSTAGECRYRQAIPVGQRLYVNTNYGLRKAFLPQGGRKYAPLR 80 (795)
Q Consensus 1 ~~gr~dIPV~~Ga~~pl~~~~~~~~~v~g~~~~~~~g~~t~~~c~y~~~ip~~~~~~~hG~~Glg~~~lp~~~~~~~~~~ 80 (795)
++| .|||||+|++.||+++... ...+||.+|||++.+|.+.. ...
T Consensus 55 ~~g-~dIPV~~Ga~~pl~~~~~~-------------------------------~~~~hG~~Gl~~~~~p~~~~---~~~ 99 (304)
T PRK10768 55 FFN-SDVPVAQGAAKPLVRPLRD-------------------------------AASVHGESGMEGYDFPEHTR---KPL 99 (304)
T ss_pred HhC-CCCeEEeCCccccCCCCCC-------------------------------cccccCCCCCCCCCCCCCCC---CCC
Confidence 368 7999999999999875431 23578899999998887654 345
Q ss_pred CccHHHHHHHHhc--cCCeEEEEecchHHHHHHHHhCCchhhccCcEEEecCCCCCCCCCCCCCCCccccCCCCCCCCCC
Q 003794 81 QPTAQQVLINAIS--AGPITVFVMGSHTNFAIFLMNNPHLKKNIEHIYVMGGAIRSDCFNSTNSSQSEQCDSIGNLYPDD 158 (795)
Q Consensus 81 ~~~Av~~li~~i~--~g~itlvaiGPLTNlA~al~~~P~l~~~ik~IviMGG~~~~~~~~~~~~~~~~~~~~~GN~~~~~ 158 (795)
+++|+++|+++++ +|+|||||+|||||||+|++++|+++++||+||||||++.. ||
T Consensus 100 ~~~A~~~i~~~~~~~~~~itila~GPLTNlA~al~~~P~i~~~i~~iviMGG~~~~-----------------GN----- 157 (304)
T PRK10768 100 SIPAVEAMRDALMNAPEPVTLVAIGPLTNIALLLSTYPEVKPYIKRIVLMGGSAGR-----------------GN----- 157 (304)
T ss_pred CccHHHHHHHHHHhCCCCEEEEECCcHHHHHHHHHHChhhHhhcCEEEEecCCcCc-----------------CC-----
Confidence 6799999999997 58999999999999999999999999999999999999853 99
Q ss_pred CCCCCccCCCCCHHHHHHHHhcCCCEEEecCCCccccCCCHHHHHHHHHhcCChHHHHHHHHHHHHHHhhcCCCCCCCCC
Q 003794 159 SNPYAEFNIFSDPFAAYTVLHSGIPVTIIPLDATKTIPVSENFFVEFERRQNTYEAQYCFQSLKMIRDTWSGSPPFHEAY 238 (795)
Q Consensus 159 ~tp~AEfN~~~DPeAA~iVl~sg~pitlVplDvT~~~~lt~~~~~~l~~~~~t~~a~~l~~~l~~~~~~~~~~~~~~~~~ 238 (795)
.+|.||||||+|||||++||+|++|++|||||+|+++.++++++++|... ++.++|+.+++.+|.+.+. ..++
T Consensus 158 ~t~~aEfN~~~DPeAA~iVl~s~~~i~~vpldvt~~~~~t~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~-----~~g~ 230 (304)
T PRK10768 158 VTPNAEFNIAVDPEAAAIVFRSGIPIVMCGLDVTNQALLTPDYLATLPEL--NRTGKMLHALFSHYRSGSM-----QTGL 230 (304)
T ss_pred CCccchhccCCCHHHHHHHHhCCCCeEEeccccceeeecCHHHHHHHHhc--ChHHHHHHHHHHHHHhhcc-----cCCC
Confidence 79999999999999999999999999999999999999999999999864 5789999999988766543 3578
Q ss_pred cccccchHhHHhhhccCCCCCCCCCCccceEEEEEEEEecCc-cccccC
Q 003794 239 CMWDSFMAGVALSIMLNSSSHNGENACSEMEYMNLTVVTSNE-PYGISD 286 (795)
Q Consensus 239 ~l~D~lA~a~al~p~~~~~~~~~~p~~~~~~~~~v~V~t~g~-~~G~~~ 286 (795)
++||++|++++++ |+++++++++|+|+++|. +||++.
T Consensus 231 ~~hD~la~a~~~~-----------P~~~~~~~~~v~Ve~~g~~trG~tv 268 (304)
T PRK10768 231 RMHDVCAIAYLLR-----------PELFTLKPCFVDVETQGEFTAGATV 268 (304)
T ss_pred CcCcHHHhhheeC-----------cccEEEEEecEEEEeCCCCCCceEE
Confidence 9999999999999 599999999999999988 899874
No 21
>cd02651 nuc_hydro_IU_UC_XIUA nuc_hydro_IU_UC_XIUA: inosine-uridine preferring, xanthosine-inosine-uridine-adenosine-preferring and, uridine-cytidine preferring nucleoside hydrolases. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity. This group contains proteins similar to nucleoside hydrolases which hydrolyze both pyrimidine and purine ribonucleosides: the inosine-uridine preferring nucleoside hydrolase from Crithidia fasciculata, the inosine-uridine-xanthosine preferring nucleoside hydrolase RihC from Escherichia coli and the xanthosine-inosine-uridine-adenosine-preferring nucleoside hydrolase RihC from Salmonella enterica serovar Typhimurium. This group also contains proteins similar to the pyrimidine-specific uridine-cytidine preferring nucleoside hydrolases URH1 from Saccharomyces cerevisiae, E. coli RihA and E. coli RihB. E. coli RihA is equally efficient with uridine a
Probab=100.00 E-value=3.4e-44 Score=388.97 Aligned_cols=216 Identities=28% Similarity=0.405 Sum_probs=192.5
Q ss_pred CCCCCCCccccCCCCCCCCCCccCCCCCCCCcccccCCcccccccccccccCCCCCCCcCCCCCCCCCCCCCCCCCCCCC
Q 003794 1 MMNRDDIPVGVGGEGGILPNGTILPDVGGYQPIIDQGMSTAGECRYRQAIPVGQRLYVNTNYGLRKAFLPQGGRKYAPLR 80 (795)
Q Consensus 1 ~~gr~dIPV~~Ga~~pl~~~~~~~~~v~g~~~~~~~g~~t~~~c~y~~~ip~~~~~~~hG~~Glg~~~lp~~~~~~~~~~ 80 (795)
++||+|||||+|++.||.++... ..++||.+|||++.+|++... .+
T Consensus 52 ~~g~~diPV~~Ga~~pl~~~~~~-------------------------------~~~~hG~~Gl~~~~~p~~~~~---~~ 97 (302)
T cd02651 52 LLGRTDVPVAAGAARPLVRPLIT-------------------------------ASDIHGESGLDGADLPPPPRR---PE 97 (302)
T ss_pred HhCCCCCcEEcCCCcCcCCCCCC-------------------------------CcCCCCCCCCCCCCCCCCCCC---cC
Confidence 47999999999999999876432 246788999999988876653 35
Q ss_pred CccHHHHHHHHhc--cCCeEEEEecchHHHHHHHHhCCchhhccCcEEEecCCCCCCCCCCCCCCCccccCCCCCCCCCC
Q 003794 81 QPTAQQVLINAIS--AGPITVFVMGSHTNFAIFLMNNPHLKKNIEHIYVMGGAIRSDCFNSTNSSQSEQCDSIGNLYPDD 158 (795)
Q Consensus 81 ~~~Av~~li~~i~--~g~itlvaiGPLTNlA~al~~~P~l~~~ik~IviMGG~~~~~~~~~~~~~~~~~~~~~GN~~~~~ 158 (795)
.++|+++|+++++ +++|||||+|||||||+|++++|+++++||+||||||++. .||
T Consensus 98 ~~~a~~~i~~~~~~~~~evtiva~GPLTNlA~al~~~P~~~~~ik~iviMGG~~~-----------------~GN----- 155 (302)
T cd02651 98 DIHAVDAIIDTLRASPEPITLVATGPLTNIALLLRKYPELAERIKEIVLMGGALG-----------------RGN----- 155 (302)
T ss_pred CCcHHHHHHHHHHhCCCCEEEEEcCchHHHHHHHHHChhhHhhcCEEEEecCCcC-----------------CCC-----
Confidence 6799999999997 5899999999999999999999999999999999999984 399
Q ss_pred CCCCCccCCCCCHHHHHHHHhcCCCEEEecCCCccccCCCHHHHHHHHHhcCChHHHHHHHHHHHHHHhhcCCCCCCCCC
Q 003794 159 SNPYAEFNIFSDPFAAYTVLHSGIPVTIIPLDATKTIPVSENFFVEFERRQNTYEAQYCFQSLKMIRDTWSGSPPFHEAY 238 (795)
Q Consensus 159 ~tp~AEfN~~~DPeAA~iVl~sg~pitlVplDvT~~~~lt~~~~~~l~~~~~t~~a~~l~~~l~~~~~~~~~~~~~~~~~ 238 (795)
.+|.||||||+|||||++||+|++|+++||||+|+++.++++++++|.+. +++.++|+.+++.+|.+.|... . ..++
T Consensus 156 ~tp~aEfN~~~DPeAA~~Vl~s~~~i~~v~ldvt~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~-~-~~~~ 232 (302)
T cd02651 156 ITPAAEFNIFVDPEAAKIVFNSGIPITMVPLDVTHKALATPEVIERIRAL-GNPVGKMLAELLDFFAETYGSA-F-TEGP 232 (302)
T ss_pred CChHHHhhcccCHHHHHHHHhCCCCeEEeccceeeeeccCHHHHHHHHHc-CChHHHHHHHHHHHHHHHHHhh-c-cCCC
Confidence 79999999999999999999999999999999999999999999999874 5789999999999887766542 2 4689
Q ss_pred cccccchHhHHhhhccCCCCCCCCCCccceEEEEEEEEecC-ccccccC
Q 003794 239 CMWDSFMAGVALSIMLNSSSHNGENACSEMEYMNLTVVTSN-EPYGISD 286 (795)
Q Consensus 239 ~l~D~lA~a~al~p~~~~~~~~~~p~~~~~~~~~v~V~t~g-~~~G~~~ 286 (795)
++||++|++++++ |+++++++++|+|+++| .+||++.
T Consensus 233 ~l~D~la~~~~~~-----------p~~~~~~~~~v~Ve~~g~~~rG~tv 270 (302)
T cd02651 233 PLHDPCAVAYLLD-----------PELFTTKRANVDVETEGELTRGRTV 270 (302)
T ss_pred CCCcHHHhHHhcC-----------ccceEEEEeeEEEEcCCCCCCceEE
Confidence 9999999999999 59999999999999998 4899974
No 22
>cd02650 nuc_hydro_CaPnhB NH_hydro_CaPnhB: A subgroup of nucleoside hydrolases similar to Corynebacterium ammoniagenes Purine/pyrimidine nucleoside hydrolase (pnhB). Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity.
Probab=100.00 E-value=1.1e-43 Score=385.31 Aligned_cols=219 Identities=26% Similarity=0.344 Sum_probs=194.9
Q ss_pred CCCCCCCccccCCCCCCCCCCccCCCCCCCCcccccCCcccccccccccccCCCCCCCcCCCCCCCCCCCCCCCCCCCCC
Q 003794 1 MMNRDDIPVGVGGEGGILPNGTILPDVGGYQPIIDQGMSTAGECRYRQAIPVGQRLYVNTNYGLRKAFLPQGGRKYAPLR 80 (795)
Q Consensus 1 ~~gr~dIPV~~Ga~~pl~~~~~~~~~v~g~~~~~~~g~~t~~~c~y~~~ip~~~~~~~hG~~Glg~~~lp~~~~~~~~~~ 80 (795)
++||.|||||+|+++||.++... .+..+||.+|||+..+|.+... .+
T Consensus 52 ~~g~~diPV~~G~~~pl~~~~~~------------------------------~~~~~hg~dGlg~~~~p~~~~~---~~ 98 (304)
T cd02650 52 LFGRPDVPVAEGAAKPLTRPPFR------------------------------IATFVHGDNGLGDVELPAPPRQ---PE 98 (304)
T ss_pred HhCCCCCCEEcCCCCCCCCCCcC------------------------------CcCCCCCCCCCCCCCCCCCCCC---cC
Confidence 47999999999999999876430 1246788999999988876653 45
Q ss_pred CccHHHHHHHHhc--cCCeEEEEecchHHHHHHHHhCCchhhccCcEEEecCCCCCCCCCCCCCCCccccCCCCCCCCCC
Q 003794 81 QPTAQQVLINAIS--AGPITVFVMGSHTNFAIFLMNNPHLKKNIEHIYVMGGAIRSDCFNSTNSSQSEQCDSIGNLYPDD 158 (795)
Q Consensus 81 ~~~Av~~li~~i~--~g~itlvaiGPLTNlA~al~~~P~l~~~ik~IviMGG~~~~~~~~~~~~~~~~~~~~~GN~~~~~ 158 (795)
+++|+++|+++++ +++||||++|||||||+|++++|+++++||+||||||++.. .||
T Consensus 99 ~~~A~~~l~~~~~~~~~~vtivaiGPLTNlA~al~~~P~i~~~ik~iviMGG~~~~----------------~GN----- 157 (304)
T cd02650 99 DESAADFLIELANEYPGELTLVAVGPLTNLALALARDPDFAKLVKQVVVMGGAFTV----------------PGN----- 157 (304)
T ss_pred ccCHHHHHHHHHHhCCCCeEEEECCcHHHHHHHHHHCcHHHhhcCEEEEeCccccC----------------CCC-----
Confidence 6799999999997 47999999999999999999999999999999999999975 499
Q ss_pred CCCCCccCCCCCHHHHHHHHhcCCCEEEecCCCccccCCCHHHHHHHHHhcCChHHHHHHHHHHHHHHhhcCCCCCCCCC
Q 003794 159 SNPYAEFNIFSDPFAAYTVLHSGIPVTIIPLDATKTIPVSENFFVEFERRQNTYEAQYCFQSLKMIRDTWSGSPPFHEAY 238 (795)
Q Consensus 159 ~tp~AEfN~~~DPeAA~iVl~sg~pitlVplDvT~~~~lt~~~~~~l~~~~~t~~a~~l~~~l~~~~~~~~~~~~~~~~~ 238 (795)
.+|.+|||||+||+||++||+|++|++|+|||+|+++.+++++++++.+. +++.++|+.+++++|.+.+.+. .+..++
T Consensus 158 ~~p~aEfN~~~DP~AA~iVl~s~~~i~~vpldvt~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~g~ 235 (304)
T cd02650 158 VTPAAEANIHGDPEAADIVFTAGADLTMVGLDVTTQTLLTREDLDELRDS-GGKAGQFLADMLDYYIDFYQES-PGLRGC 235 (304)
T ss_pred CCchHHhhcccCHHHHHHHHhCCCCeEEeCCceeeeEecCHHHHHHHHhc-CChHHHHHHHHHHHHHHHHHhc-cCCCcc
Confidence 79999999999999999999999999999999999999999999999874 5789999999999888766543 445789
Q ss_pred cccccchHhHHhhhccCCCCCCCCCCccceEEEEEEEEecCccccccC
Q 003794 239 CMWDSFMAGVALSIMLNSSSHNGENACSEMEYMNLTVVTSNEPYGISD 286 (795)
Q Consensus 239 ~l~D~lA~a~al~p~~~~~~~~~~p~~~~~~~~~v~V~t~g~~~G~~~ 286 (795)
++||++|++++++ |++++.++++++|+++|.+||++.
T Consensus 236 ~l~D~la~~~~~~-----------P~~~~~~~~~v~Ve~~g~~~G~tv 272 (304)
T cd02650 236 ALHDPLAVAAAVD-----------PSLFTTREGVVRVETEGPTRGRTI 272 (304)
T ss_pred cCCcHHHHHhhcC-----------ccceEEEEeeEEEEeCCCCCceEE
Confidence 9999999999999 599999999999999998999985
No 23
>cd02653 nuc_hydro_3 NH_3: A subgroup of nucleoside hydrolases. This group contains eukaryotic and bacterial proteins similar to nucleoside hydrolases. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity.
Probab=100.00 E-value=1.7e-43 Score=385.60 Aligned_cols=218 Identities=26% Similarity=0.323 Sum_probs=191.6
Q ss_pred CCCCCCCccccCCCCCCCCCCccCCCCCCCCcccccCCcccccccccccccCCCCCCCcCCCCCCCCCCCCCCCCCCCCC
Q 003794 1 MMNRDDIPVGVGGEGGILPNGTILPDVGGYQPIIDQGMSTAGECRYRQAIPVGQRLYVNTNYGLRKAFLPQGGRKYAPLR 80 (795)
Q Consensus 1 ~~gr~dIPV~~Ga~~pl~~~~~~~~~v~g~~~~~~~g~~t~~~c~y~~~ip~~~~~~~hG~~Glg~~~lp~~~~~~~~~~ 80 (795)
++||.|||||+|++.||.++... +.++||.+|||+..+|++... .+
T Consensus 52 ~~g~~dIPV~~Ga~~pl~~~~~~-------------------------------~~~~hG~dGlg~~~~p~~~~~---~~ 97 (320)
T cd02653 52 LLGRTDIPVYLGADKPLAGPLTT-------------------------------AQDTHGPDGLGYAELPASTRT---LS 97 (320)
T ss_pred HcCCCCCcEEeCCCccCCCCCCC-------------------------------cccccCCCCCCCCCCCCCCCC---CC
Confidence 47999999999999999876432 246788999999988876643 45
Q ss_pred CccHHHHHHHHhccC-CeEEEEecchHHHHHHHHhCCchhhccCcEEEecCCCCCCCCCCCCCCCccccCCCCCCCCCCC
Q 003794 81 QPTAQQVLINAISAG-PITVFVMGSHTNFAIFLMNNPHLKKNIEHIYVMGGAIRSDCFNSTNSSQSEQCDSIGNLYPDDS 159 (795)
Q Consensus 81 ~~~Av~~li~~i~~g-~itlvaiGPLTNlA~al~~~P~l~~~ik~IviMGG~~~~~~~~~~~~~~~~~~~~~GN~~~~~~ 159 (795)
+++|+++|++++++. +||||++|||||||+|++++|+++++||+||+|||++.. +|| .
T Consensus 98 ~~~A~~~i~~~~~~~~eitiva~GPLTNlA~al~~~P~~~~~ik~iviMGG~~~~----------------~GN-----~ 156 (320)
T cd02653 98 DESAAQAWVDLARAHPDLIGLATGPLTNLALALREEPELPRLLRRLVIMGGAFNS----------------RGN-----T 156 (320)
T ss_pred CCCHHHHHHHHHHhCCCeEEEECCchHHHHHHHHHChHHHHhcCEEEEECCCcCC----------------CCC-----C
Confidence 689999999999732 899999999999999999999999999999999999875 499 7
Q ss_pred CCCCccCCCCCHHHHHHHHhc----CCCEEEecCCCccccCCCHHHHHHHHHhcCChHHHHHHHHHHHHHHhhcCCCCCC
Q 003794 160 NPYAEFNIFSDPFAAYTVLHS----GIPVTIIPLDATKTIPVSENFFVEFERRQNTYEAQYCFQSLKMIRDTWSGSPPFH 235 (795)
Q Consensus 160 tp~AEfN~~~DPeAA~iVl~s----g~pitlVplDvT~~~~lt~~~~~~l~~~~~t~~a~~l~~~l~~~~~~~~~~~~~~ 235 (795)
+|.||||||+|||||++||+| ++|++|||||+|+++.+++++++++.+. +++.++|+.+++.+|.+.+.+. ...
T Consensus 157 tp~aEfN~~~DPeAA~iVl~s~~~~~~~i~~vplDvt~~~~~t~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~ 234 (320)
T cd02653 157 SPVAEWNYWVDPEAAKEVLAAFGGHPVRPTICGLDVTRAVVLTPNLLERLARA-KDSVGAFIEDALRFYFEFHWAY-GHG 234 (320)
T ss_pred CcHhHHhhhcCHHHHHHHHhccccCCCCeEEeccccceeeecCHHHHHHHHhc-CChHHHHHHHHHHHHHHHHHhc-CCC
Confidence 999999999999999999998 6999999999999999999999999874 5789999999999888765432 334
Q ss_pred CCCcccccchHhHHhhhccCCCCCCCCCCccceEEEEEEEEecCccccccC
Q 003794 236 EAYCMWDSFMAGVALSIMLNSSSHNGENACSEMEYMNLTVVTSNEPYGISD 286 (795)
Q Consensus 236 ~~~~l~D~lA~a~al~p~~~~~~~~~~p~~~~~~~~~v~V~t~g~~~G~~~ 286 (795)
.++++||++|++++++| +++++++++|+|+++|..+|++.
T Consensus 235 ~~~~lhD~lAva~~~~P-----------~l~~~~~~~v~Ve~~g~~~G~tv 274 (320)
T cd02653 235 YGAVIHDPLAAAVALNP-----------NLARGRPAYVDVECTGVLTGQTV 274 (320)
T ss_pred CCCCCChHHHHHHhcCh-----------hheEEEEeeEEEEeCCCCCceEE
Confidence 57899999999999994 99999999999999998679874
No 24
>cd02649 nuc_hydro_CeIAG nuc_hydro_CeIAG: Nucleoside hydrolases similar to the inosine-adenosine-guanosine-preferring nucleoside hydrolase from Caenorhabditis elegans. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity. This group contains eukaryotic, bacterial and archeal proteins similar to the purine-preferring nucleoside hydrolase (IAG-NH) from C. elegans and the salivary purine nucleosidase from Aedes aegypti. C. elegans IAG-NH exhibits a high affinity for the substrate analogue p-nitrophenylriboside (p-NPR).
Probab=100.00 E-value=2.9e-43 Score=381.30 Aligned_cols=219 Identities=27% Similarity=0.384 Sum_probs=191.1
Q ss_pred CCCCCCCccccCCCCCCCCCCccCCCCCCCCcccccCCcccccccccccccCCCCCCCcCCCCCCCCCCCCCCCCCCCCC
Q 003794 1 MMNRDDIPVGVGGEGGILPNGTILPDVGGYQPIIDQGMSTAGECRYRQAIPVGQRLYVNTNYGLRKAFLPQGGRKYAPLR 80 (795)
Q Consensus 1 ~~gr~dIPV~~Ga~~pl~~~~~~~~~v~g~~~~~~~g~~t~~~c~y~~~ip~~~~~~~hG~~Glg~~~lp~~~~~~~~~~ 80 (795)
++||.|||||+|+++||+++... ..++||.+|||+..+|++... .+.+
T Consensus 53 ~~g~~diPV~~Ga~~pl~~~~~~-------------------------------~~~~hG~~Glg~~~~p~~~~~-~~~~ 100 (306)
T cd02649 53 ACGRRDIPVYRGASKPLLGPGPT-------------------------------AAYFHGKDGFGDVGFPEPKDE-LELQ 100 (306)
T ss_pred HhCCCCCCEecCCCccCCCCCCC-------------------------------ccccCCCCCCCCCCCCCCccc-CCcC
Confidence 37999999999999999886431 246788999999988876521 1345
Q ss_pred CccHHHHHHHHhc--cCCeEEEEecchHHHHHHHHhCCchhhccCcEEEecCCCCCCCCCCCCCCCccccCCCCCCCCCC
Q 003794 81 QPTAQQVLINAIS--AGPITVFVMGSHTNFAIFLMNNPHLKKNIEHIYVMGGAIRSDCFNSTNSSQSEQCDSIGNLYPDD 158 (795)
Q Consensus 81 ~~~Av~~li~~i~--~g~itlvaiGPLTNlA~al~~~P~l~~~ik~IviMGG~~~~~~~~~~~~~~~~~~~~~GN~~~~~ 158 (795)
+.+|+++|+++++ +++||||++|||||||+|++++|+++++||+||||||++.. .||
T Consensus 101 ~~~a~~~i~~~~~~~~~~vtiva~GPLTNlA~al~~~p~~~~~i~~iviMGG~~~~----------------~GN----- 159 (306)
T cd02649 101 KEHAVDAIIRLVREYPGEITLVALGPLTNLALAYRLDPSLPQKIKRLYIMGGNREG----------------VGN----- 159 (306)
T ss_pred CCCHHHHHHHHHHhCCCCeEEEecccHHHHHHHHHHChHHHHhcCeEEEeCCCccC----------------CCC-----
Confidence 6799999999997 58999999999999999999999999999999999999875 499
Q ss_pred CCCCCccCCCCCHHHHHHHHhc-CCCEEEecCCCcc-ccCCCHHHHHHHHHhcCChHHHHHHHHHHHHHHhhcCCCCCCC
Q 003794 159 SNPYAEFNIFSDPFAAYTVLHS-GIPVTIIPLDATK-TIPVSENFFVEFERRQNTYEAQYCFQSLKMIRDTWSGSPPFHE 236 (795)
Q Consensus 159 ~tp~AEfN~~~DPeAA~iVl~s-g~pitlVplDvT~-~~~lt~~~~~~l~~~~~t~~a~~l~~~l~~~~~~~~~~~~~~~ 236 (795)
.+|.||||||+|||||++||+| ++|++|||||+|+ ++.+++++++++... ++.++|+.+++.+|.+.+... .+..
T Consensus 160 ~~~~aEfN~~~DPeAA~~Vl~s~~~~i~lv~ldvt~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~ 236 (306)
T cd02649 160 TTPAAEFNFHVDPEAAHIVLNSFGCPITIVPWETTLLAFPLDWEFEDKWANR--LEKALFAESLNRREYAFASEG-LGGD 236 (306)
T ss_pred CCcccccccccCHHHHHHHHhcCCCCEEEEccccccceeecCHHHHHHHHhc--ChHHHHHHHHHHHHHHHHHhh-cCCC
Confidence 7999999999999999999999 9999999999999 999999999999864 478999999998887665433 3457
Q ss_pred CCcccccchHhHHhhhccCCCCCCCCCCccceEE-EEEEEEecCc-cccccC
Q 003794 237 AYCMWDSFMAGVALSIMLNSSSHNGENACSEMEY-MNLTVVTSNE-PYGISD 286 (795)
Q Consensus 237 ~~~l~D~lA~a~al~p~~~~~~~~~~p~~~~~~~-~~v~V~t~g~-~~G~~~ 286 (795)
++++||++|++++++| ++++.+. .+|+|+++|. +||+|.
T Consensus 237 g~~~hD~lava~~~~P-----------~l~~~~~~~~v~Ve~~g~~~~G~tv 277 (306)
T cd02649 237 GWVPCDALAVAAALDP-----------SIITRRLTYAVDVELHGELTRGQMV 277 (306)
T ss_pred CCCCCcHHHHHHHcCH-----------hHEEEEEeeeEEEEECCCCCcceEE
Confidence 8999999999999995 9999766 4599999987 899984
No 25
>PTZ00313 inosine-adenosine-guanosine-nucleoside hydrolase; Provisional
Probab=100.00 E-value=1.7e-42 Score=378.73 Aligned_cols=229 Identities=22% Similarity=0.279 Sum_probs=183.3
Q ss_pred CCCCC-CCccccCCCCCCCCCCc-cCCCCCCCCcccccCCcccccccccccccCCCCCCCcCCCCCCCCCCCCCCCC---
Q 003794 1 MMNRD-DIPVGVGGEGGILPNGT-ILPDVGGYQPIIDQGMSTAGECRYRQAIPVGQRLYVNTNYGLRKAFLPQGGRK--- 75 (795)
Q Consensus 1 ~~gr~-dIPV~~Ga~~pl~~~~~-~~~~v~g~~~~~~~g~~t~~~c~y~~~ip~~~~~~~hG~~Glg~~~lp~~~~~--- 75 (795)
++||. ||||++|+.+|+.+... ...+.| ..||.+|||+..+|++...
T Consensus 56 ~~g~~~dvPv~~ga~~~~~~~~~~~~~~~~----------------------------g~~G~~glg~~~~p~~~~~~~~ 107 (326)
T PTZ00313 56 MMHAREATPLFPIGKSSFKGVNPFPSEWRW----------------------------SAKNMDDLPCLNIPEHVAIWEK 107 (326)
T ss_pred HhCCCCCCCeeeecCCcccCCCCCcchhee----------------------------cccCCCCCCCCCCCCccccccc
Confidence 47996 89999999999866311 122222 2589999999888866520
Q ss_pred CCCC-CCccHHHHHHHHhc--cCCeEEEEecchHHHHHHHHhCC-chhhccCcEEEecCCCCCCCCCCCCCCCccccCCC
Q 003794 76 YAPL-RQPTAQQVLINAIS--AGPITVFVMGSHTNFAIFLMNNP-HLKKNIEHIYVMGGAIRSDCFNSTNSSQSEQCDSI 151 (795)
Q Consensus 76 ~~~~-~~~~Av~~li~~i~--~g~itlvaiGPLTNlA~al~~~P-~l~~~ik~IviMGG~~~~~~~~~~~~~~~~~~~~~ 151 (795)
..+. +..+|+++|+++++ +|+||||++|||||||+|++++| +++++||+||||||++.. +
T Consensus 108 ~~~~~~~~~a~~~i~~~i~~~p~eItiva~GPLTNlAlal~~~pp~~~~~ik~iviMGG~~~~----------------~ 171 (326)
T PTZ00313 108 LKPENEALVGEELLADLVMSSPEKVTICVTGPLSNVAWCIEKYGEEFTKKVEECVIMGGAVDV----------------G 171 (326)
T ss_pred cCCccccchHHHHHHHHHHhCCCCEEEEECCcHHHHHHHHHhCCHHHHHhcCEEEEeCCcccC----------------C
Confidence 0111 12459999999996 58999999999999999999996 999999999999999975 4
Q ss_pred CCCCCCCCCCCCccCCCCCHHHHHHHHhcC-CCEEEecCCCccccCCCHHHHHHHHHhcCChHHHHHHHHHHHHHHhhcC
Q 003794 152 GNLYPDDSNPYAEFNIFSDPFAAYTVLHSG-IPVTIIPLDATKTIPVSENFFVEFERRQNTYEAQYCFQSLKMIRDTWSG 230 (795)
Q Consensus 152 GN~~~~~~tp~AEfN~~~DPeAA~iVl~sg-~pitlVplDvT~~~~lt~~~~~~l~~~~~t~~a~~l~~~l~~~~~~~~~ 230 (795)
||++.+..+|.||||||+|||||++||+|+ +|++|||||+|+++.++++++++|.+....+.++|+.+++.++......
T Consensus 172 GN~~~~~~tp~AEfN~~~DPeAA~iV~~s~~~~i~~v~LdvT~~~~~t~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (326)
T PTZ00313 172 GNVFLPGTDGSAEWNIYWDPPAAKTVLMCPHIRKVLFSLDSTNSVPVTSEVVKKFGAQNKYLLSQFVGSTWAMCTHHELL 251 (326)
T ss_pred CCccCCCCCcccchhhhcCHHHHHHHHhCCCCCEEEeccccccceeCCHHHHHHHHhcCcchHHHHHHHHHhhhhhhhhh
Confidence 995433448999999999999999999996 9999999999999999999999998753335788888865543211110
Q ss_pred CCCCCCCCcccccchHhHHhhhccCCCCCCCCCCccceEEEEEEEEecCc-cccccC
Q 003794 231 SPPFHEAYCMWDSFMAGVALSIMLNSSSHNGENACSEMEYMNLTVVTSNE-PYGISD 286 (795)
Q Consensus 231 ~~~~~~~~~l~D~lA~a~al~p~~~~~~~~~~p~~~~~~~~~v~V~t~g~-~~G~~~ 286 (795)
....++++||++|++++++ |++++.++++|+|+++|. +||+|.
T Consensus 252 --~~~~g~~~hD~lA~a~~~~-----------Pel~~~~~~~v~Ve~~~~~t~G~tv 295 (326)
T PTZ00313 252 --RPGDGYYAWDVLTAAYVIE-----------RNLAELEPVPLEVVVEKAKNEGRTR 295 (326)
T ss_pred --cCCCCCcCcHHHHHHHhcC-----------hheEEEEEEEEEEEeCCCCCCceEE
Confidence 1236899999999999999 499999999999999875 899984
No 26
>cd02654 nuc_hydro_CjNH nuc_hydro_CjNH. Nucleoside hydrolases similar to Campylobacter jejuni nucleoside hydrolase. This group contains eukaryotic and bacterial proteins similar to C. jejuni nucleoside hydrolase. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity. C. jejuni nucleoside hydrolase is inactive against natural nucleosides or against common nucleoside analogues.
Probab=100.00 E-value=2.8e-42 Score=375.95 Aligned_cols=221 Identities=20% Similarity=0.225 Sum_probs=184.7
Q ss_pred CCCCCCCccccCCCCCCCCCCccCCCCCCCCcccccCCcccccccccccccCCCCCCCcCCCCCCCCCCCCCCCCC----
Q 003794 1 MMNRDDIPVGVGGEGGILPNGTILPDVGGYQPIIDQGMSTAGECRYRQAIPVGQRLYVNTNYGLRKAFLPQGGRKY---- 76 (795)
Q Consensus 1 ~~gr~dIPV~~Ga~~pl~~~~~~~~~v~g~~~~~~~g~~t~~~c~y~~~ip~~~~~~~hG~~Glg~~~lp~~~~~~---- 76 (795)
++||.|||||+|+++||+++... .| +..+.||.+|+++..+|++...+
T Consensus 56 ~~g~~dIPV~~Ga~~pl~~~~~~---~~-------------------------~~~~~~G~~g~~~~~~p~~~~~~~~~~ 107 (318)
T cd02654 56 LAGADAIPVYAGANTPLGRTNRA---FH-------------------------AWESLYGAYLWQGAWSPEYSDMYTNAS 107 (318)
T ss_pred HhCCCCCCEEECCCccccCCccc---cc-------------------------cccccCCCcccCCCCCCCccccccccc
Confidence 37999999999999999986431 11 23578999999998887654210
Q ss_pred -CCCCCccHHHHHHHHhc--cCCeEEEEecchHHHHHHHHhCCchhhccCcEEEecCCCCCCCCCCCCCCCccccCCCC-
Q 003794 77 -APLRQPTAQQVLINAIS--AGPITVFVMGSHTNFAIFLMNNPHLKKNIEHIYVMGGAIRSDCFNSTNSSQSEQCDSIG- 152 (795)
Q Consensus 77 -~~~~~~~Av~~li~~i~--~g~itlvaiGPLTNlA~al~~~P~l~~~ik~IviMGG~~~~~~~~~~~~~~~~~~~~~G- 152 (795)
.+..+++|+++|+++++ +++||||++|||||||+|++++|+++++||+||||||++.. .|
T Consensus 108 ~~~~~~~~A~~~i~~~~~~~p~~itiva~GPLTNlA~al~~~P~~~~~i~~iviMGG~~~~----------------~g~ 171 (318)
T cd02654 108 IIRNASIPAALFMIEMVRKHPHEVSIVAAGPLTNLALALRIDPDFAPLAKELVIMGGYLDD----------------IGE 171 (318)
T ss_pred cCCCCCccHHHHHHHHHHhCCCceEEEECCcHHHHHHHHHHChhHHHhCCEEEEeCCCccC----------------CCC
Confidence 13446799999999997 58999999999999999999999999999999999999864 24
Q ss_pred CCCCCCCC--CCCccCCCCCHHHHHHHHhcCCCEEEecCCCccccCCCHHHHHHHHHhcCChHHHHHHHHHHHHHHhhcC
Q 003794 153 NLYPDDSN--PYAEFNIFSDPFAAYTVLHSGIPVTIIPLDATKTIPVSENFFVEFERRQNTYEAQYCFQSLKMIRDTWSG 230 (795)
Q Consensus 153 N~~~~~~t--p~AEfN~~~DPeAA~iVl~sg~pitlVplDvT~~~~lt~~~~~~l~~~~~t~~a~~l~~~l~~~~~~~~~ 230 (795)
| .+ +.||||||+|||||++||+|++|++|||||+|+++.+++++++++ ++.++++.+++.+|.+.+.+
T Consensus 172 ~-----~~~~~~aEfN~~~DPeAA~iVl~s~~~~~~v~ldvT~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~ 241 (318)
T cd02654 172 F-----VNRHYASDFNLIMDPEAASIVLTAPWKSITIPGNVTNRTCLTPEQIKAD-----DPLRDFIRETLDLPIDYAKE 241 (318)
T ss_pred c-----CCCCCCcceeeccCHHHHHHHHhCCCCEEEeCcccccceeCCHHHHhcc-----CHHHHHHHHHHHHHHHHHHH
Confidence 4 34 399999999999999999999999999999999999999988754 46789999998888776654
Q ss_pred CCCCCCCCcccccchHhHHhhhccCCCCCCCCCCccceEEE-EEEEEecCccccccC
Q 003794 231 SPPFHEAYCMWDSFMAGVALSIMLNSSSHNGENACSEMEYM-NLTVVTSNEPYGISD 286 (795)
Q Consensus 231 ~~~~~~~~~l~D~lA~a~al~p~~~~~~~~~~p~~~~~~~~-~v~V~t~g~~~G~~~ 286 (795)
......++++||++|++++++| ++++.+.+ +|+|++.+.++|+|.
T Consensus 242 ~~~~~~g~~~hD~lava~~~~P-----------~l~~~~~~~~v~Ve~~~~~~G~tv 287 (318)
T cd02654 242 FVGTGDGLPMWDELASAVALDP-----------ELATSSETFYIDVQTDSDGGGQLI 287 (318)
T ss_pred hcCCCCCCCCchHHHHHHHcCH-----------hHccceEeEEEEEEeCCCcCCeEE
Confidence 2112268999999999999995 99998777 999999888999875
No 27
>cd02647 nuc_hydro_TvIAG nuc_hydro_ TvIAG: Nucleoside hydrolases similar to the Inosine-adenosine-guanosine-preferring nucleoside hydrolase from Trypanosoma vivax. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. Nucleoside hydrolases vary in their substrate specificity. This group contains eukaryotic and bacterial proteins similar to the purine specific inosine-adenosine-guanosine-preferring nucleoside hydrolase (IAG-NH) from T. vivax. T. vivax IAG-NH is of the order of a thousand to ten thousand fold more specific towards the naturally occurring purine nucleosides, than towards the pyrimidine nucleosides.
Probab=100.00 E-value=5.6e-41 Score=364.05 Aligned_cols=218 Identities=33% Similarity=0.484 Sum_probs=179.1
Q ss_pred CCCC-CCCccccCCCCCCCCCCccCCCCCCCCcccccCCcccccccccccccCCCCCCCcCCCCCCCC----CCCCCCCC
Q 003794 1 MMNR-DDIPVGVGGEGGILPNGTILPDVGGYQPIIDQGMSTAGECRYRQAIPVGQRLYVNTNYGLRKA----FLPQGGRK 75 (795)
Q Consensus 1 ~~gr-~dIPV~~Ga~~pl~~~~~~~~~v~g~~~~~~~g~~t~~~c~y~~~ip~~~~~~~hG~~Glg~~----~lp~~~~~ 75 (795)
++|| .|||||+|+..||..... .. ..|+.+|+++. .+|....
T Consensus 55 ~~g~~~dIPV~~Ga~~pL~~~~~-~~-------------------------------~~~~~~g~~~~~~~~~~~~~~~- 101 (312)
T cd02647 55 RLGQRDAIPVGKGGSRAVNPFPR-SW-------------------------------RRDAAFSVDHLPILNERYTVET- 101 (312)
T ss_pred HhCCCCCCCEEeCCCcCcccCcc-cc-------------------------------ccccccCcCcCCCCccccCCCC-
Confidence 3788 899999999999943111 11 12333444321 1221111
Q ss_pred CCCCCCccHHHHHHHHhc--cCCeEEEEecchHHHHHHHHhCCchhhccCcEEEecCCCCCCCCCCCCCCCccccCCCCC
Q 003794 76 YAPLRQPTAQQVLINAIS--AGPITVFVMGSHTNFAIFLMNNPHLKKNIEHIYVMGGAIRSDCFNSTNSSQSEQCDSIGN 153 (795)
Q Consensus 76 ~~~~~~~~Av~~li~~i~--~g~itlvaiGPLTNlA~al~~~P~l~~~ik~IviMGG~~~~~~~~~~~~~~~~~~~~~GN 153 (795)
+.++.+|+++|+++++ +++||||++|||||||+|++++|+++++||+||||||++.. +||
T Consensus 102 --~~~~~~a~~~i~~~~~~~~~~vtiva~GPLTNlA~al~~~P~~~~~i~~iviMGG~~~~----------------~GN 163 (312)
T cd02647 102 --PLAEETAQLVLIEKIKASLEPVTLLVTGPLTNLARALDSDPDISSNIEEVYIMGGGVDA----------------PGN 163 (312)
T ss_pred --CcCcchHHHHHHHHHHhCCCCEEEEEcccHHHHHHHHHHChHHHhhcCEEEEeCCccCC----------------CCc
Confidence 2346789999999997 58999999999999999999999999999999999999976 499
Q ss_pred CCCCCCCCCCccCCCCCHHHHHHHHhcCCCEEEecCCCccccCCCHH----HHHHHHHhcCChHHHHHHHHHHHHHHhhc
Q 003794 154 LYPDDSNPYAEFNIFSDPFAAYTVLHSGIPVTIIPLDATKTIPVSEN----FFVEFERRQNTYEAQYCFQSLKMIRDTWS 229 (795)
Q Consensus 154 ~~~~~~tp~AEfN~~~DPeAA~iVl~sg~pitlVplDvT~~~~lt~~----~~~~l~~~~~t~~a~~l~~~l~~~~~~~~ 229 (795)
+|+...+|+||||||+|||||++||+|++|++|||||+|+++.++++ +++++... +++.++|+.+++.+|++.+
T Consensus 164 ~~~~~~tp~aEfNi~~DPeAA~iV~~s~~~i~~vpldvt~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~- 241 (312)
T cd02647 164 VFTPPSNGTAEFNIFWDPLAAKTVFDSGLKITLVPLDATNTVPLTREFLETDRQRFAAQ-RLPASDLAGQGYALVKPLE- 241 (312)
T ss_pred cccCCCCCCcccccccCHHHHHHHHhCCCCEEEEccccccccccCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHhhhc-
Confidence 77666799999999999999999999999999999999999999999 55566653 5789999999998887654
Q ss_pred CCCCCCCCCcccccchHhHHhhhccCCCCCCCCCCccceEEEE-EEEEecCccccccC
Q 003794 230 GSPPFHEAYCMWDSFMAGVALSIMLNSSSHNGENACSEMEYMN-LTVVTSNEPYGISD 286 (795)
Q Consensus 230 ~~~~~~~~~~l~D~lA~a~al~p~~~~~~~~~~p~~~~~~~~~-v~V~t~g~~~G~~~ 286 (795)
+..++++||++|++++++ |++++.+++. ++|+++|.+||+|.
T Consensus 242 ----~~~g~~~hD~lava~~~~-----------p~~~~~~~~~~v~Ve~~g~t~G~Tv 284 (312)
T cd02647 242 ----FNSTYYMWDVLTTLVLGA-----------KEVDNTKESLILEVDTDGLSAGQTV 284 (312)
T ss_pred ----CCCCccccHHHHHHHHcC-----------chhcccccccceEEEECCCCCceEE
Confidence 346899999999999999 4999998898 99999998999985
No 28
>KOG2938 consensus Predicted inosine-uridine preferring nucleoside hydrolase [Nucleotide transport and metabolism]
Probab=100.00 E-value=7.2e-41 Score=361.96 Aligned_cols=305 Identities=23% Similarity=0.250 Sum_probs=230.2
Q ss_pred CCcEEEEcCCCchHHHHHHHHHhCCCCceeEEEEE-EeCCCCchhHhHHHHHHHHHHhCCCCCcEeecccccccCCCCCC
Q 003794 406 GKPVVFDIDMSAGDFLALIYLLKLPVELINLKGIL-VSSTGWATSATVDVVYDLLHMMGRDDIPVGLGDVFAVGEVNPKF 484 (795)
Q Consensus 406 ~kkVIiDtD~g~DDalAL~~lL~~p~~~idl~gIt-v~Gn~~~~~a~~~~a~~iL~~~Gr~dIPV~~Ga~~pl~~~~~~~ 484 (795)
..++|||||+|.||++||+++|.+| +++++||| |.||...+.+ ..||.++|+++||.||||++|+..||..+.
T Consensus 21 ~~~iiid~D~~~Dd~~al~la~~~~--~~~ilglTtv~Gn~~~~~t-~~NA~~~L~l~~r~dIPV~~Ga~kpl~~~~--- 94 (350)
T KOG2938|consen 21 KRKIIIDCDPGSDDAFALLLALLGP--ELEILGLTTVHGNVTVEDT-DRNALDLLSLLGRLDIPVYEGAAKPLIRSP--- 94 (350)
T ss_pred ceeEEEeCCCCcccHHHHHHHhcCc--cceeEeeeEeeCCccHhhh-hhhHHHHHHhcCCcCCCchhcccccccCCc---
Confidence 4689999999999999999999998 99999999 8899887775 468999999999999999999999997652
Q ss_pred CCCCCCCcccccccCCCCCCCccccccccCCCCCCccccccccccccCCCCCCCCCccCchhHHHHHHHHHHhcCCCCcE
Q 003794 485 PPIGGCKYAKAIPLGSGGFLDSDTLYGLARDLPRSPRRYTAENSVRFGASQDNDDPELRQPLAVDVWKSIVESIEPGSKI 564 (795)
Q Consensus 485 p~~~~~~~~~~~~hG~dGlgd~~~~~g~~~~lP~~~~~~~~~~~~~~~~p~~~d~~~~~~~~A~~~~~~i~~~~~~~~~V 564 (795)
..+....||.||++|. .+|.. +. ..+...+.+++.+.... .+++|
T Consensus 95 ------~~~a~~~hG~dGl~d~--------~~~~~-~~------------------~~~~~~~~~~~i~~~~~--~p~~I 139 (350)
T KOG2938|consen 95 ------NDWANAFHGIDGLGDI--------LLPPP-RD------------------DINVGHGAEFAIEQDIA--YPGEI 139 (350)
T ss_pred ------cchhhhhccccccCCc--------ccCCc-cc------------------cccccccHHHHHHHhhc--CCCCc
Confidence 1133457999999884 34432 11 12345566665555543 44699
Q ss_pred EEEEecchhHHHHHH-hCCCcccccCeEEEecCCCCCCCCCCCccccCCCCcccCCCCCCHHHHHHHHhcC-CceEEecc
Q 003794 565 TILTNGPLTNLAQII-GLQNSSSVIQDVYIVGGNKGQDNEKGNVFTVPSSKYAEFNMFLDPLAAKAVFESK-LEIKLIPL 642 (795)
Q Consensus 565 tIla~GPLTNLA~al-~~P~i~~~I~~vviMGG~~~~~~~~GNv~~~~~~~~aEfN~~~DP~AA~iV~~s~-~~itlipl 642 (795)
|||++|||||||+++ .+|++.++|++++||||++ +..||+. +.||||++.|||||++||++. .+++++||
T Consensus 140 t~va~GPLTNlAla~~~~pd~~~~v~~ivimGG~~---~~~gnv~-----~~AefN~~~DPeAA~~vl~~~k~~~~v~pi 211 (350)
T KOG2938|consen 140 TIVAYGPLTNLALALALDPDFLKNVKRIVIMGGNY---YGNGNVT-----HGAEFNFYRDPEAAHTVLTRTKDPITVGPI 211 (350)
T ss_pred eEEEeccchHHHHHhhcChhHhhccccEEEecccc---ccccCcC-----ccccccccCChHHHHHHHhcCCCceeEeee
Confidence 999999999999999 9999999999999999999 4468886 689999999999999999996 67889999
Q ss_pred ccchhccccHHHHHHHHhc--CCCchHHHHHHHHHHHHHHHHhcccccccCccccceeeeeeeccCCccceeeEEEEEEE
Q 003794 643 HMQRRVASFFKILHKLRDR--KKTPESVFSQRLLQGLMTLQQSHHSYHHVDTFLGEVLGAVILGGNPHLNQTYKIKSLEI 720 (795)
Q Consensus 643 dvt~~~~~~~~~l~~l~~~--~~tp~a~fl~~ll~~~~~~~~~~~~~~~~~~~l~D~Laaa~l~~p~~l~~~~~~~~v~V 720 (795)
++|++...+...+-.+... .+++...|+......++.. .+.|....+..+|..++++++.+.-+..+.....+.+
T Consensus 212 ~i~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~G~~~~~~~d~~~~a~~i~~d~~~~~~~~~~~~~ 288 (350)
T KOG2938|consen 212 NITHQGSLTNLALIRLSNRKNKHPILESYLSLGTARQQVY---NGAYGNIFTPYPDNIYVAFAIFPDPLAAKTVYVSVDV 288 (350)
T ss_pred eeeeccccchhhhhhhhhhccCCchhHHhhhhhHHhhhcc---cccCCccCCCCCcHHHHHHHhhhhhhhhhhhhheeee
Confidence 9999998887766555432 2345444444333333222 1223233344778777777776632321223344555
Q ss_pred eecCCcccceeEEEecCC-----CcceEEEeecCHHHHHHHHHHHHhcc
Q 003794 721 ISDGDISKVGQIIVNQEQ-----GKLVKVLESLNVAVYYDHFAEVLGDH 764 (795)
Q Consensus 721 e~~g~~~t~G~tv~d~~~-----~~~v~v~~~vD~~~f~~~l~~~L~~~ 764 (795)
.... +++|+.++++.. ..+++....++.+.|+..+...+...
T Consensus 289 ~~~~--~~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~f~~~~~~~l~~~ 335 (350)
T KOG2938|consen 289 LLDS--PTRGQMVVDHLPAKLDYPANVTKITTVDVVKFLTLRIQVLGRK 335 (350)
T ss_pred eecC--cceeeeEEecchhhhcccccceeecccccchheehhhhhhhhh
Confidence 5544 689999998422 57999999999999999998888755
No 29
>cd00455 nuc_hydro nuc_hydro: Nucleoside hydrolases. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity. This group contains eukaryotic, bacterial and archeal proteins similar to the inosine-uridine preferring nucleoside hydrolase from Crithidia fasciculata, the xanthosine-inosine-uridine-adenosine-preferring nucleoside hydrolase RihC from Salmonella enterica serovar Typhimurium, the purine-specific inosine-adenosine-guanosine-preferring nucleoside hydrolase from Trypanosoma vivax and, pyrimidine-specific uridine-cytidine preferring nucleoside hydrolases such as URH1 from Saccharomyces cerevisiae, RihA and RihB from Escherichia coli. Nucleoside hydrolases are of interest as a target for antiprotozoan drugs as, no nucleoside hydrolase activity or genes encoding these enzymes have been detected in humans and, parasitic protozoans lack de novo purine synthesis relying on nucleosid
Probab=100.00 E-value=1.8e-40 Score=358.54 Aligned_cols=216 Identities=25% Similarity=0.296 Sum_probs=184.5
Q ss_pred CCCCCCCccccCCCCCCCCCCccCCCCCCCCcccccCCcccccccccccccCCCCCCCcCCCCCCCCCCCCCCCCCCCCC
Q 003794 1 MMNRDDIPVGVGGEGGILPNGTILPDVGGYQPIIDQGMSTAGECRYRQAIPVGQRLYVNTNYGLRKAFLPQGGRKYAPLR 80 (795)
Q Consensus 1 ~~gr~dIPV~~Ga~~pl~~~~~~~~~v~g~~~~~~~g~~t~~~c~y~~~ip~~~~~~~hG~~Glg~~~lp~~~~~~~~~~ 80 (795)
++||.|||||+|++.||.++.... ....||.+|.+ .. +.... +.+
T Consensus 51 ~~g~~~iPV~~G~~~pl~~~~~~~------------------------------~~~~~g~~g~~-~~-~~~~~---~~~ 95 (295)
T cd00455 51 LLGRLDIPVYAGATRPLTGEIPAA------------------------------YPEIHGEGGLG-LP-IPPII---EAD 95 (295)
T ss_pred HhCCCCCCEeCCCCCCCCCCCCCC------------------------------CcccCCCCCCC-CC-CCCCC---cCC
Confidence 479999999999999998764321 12356777733 22 22221 345
Q ss_pred CccHHHHHHHHhc--cCCeEEEEecchHHHHHHHHhCCchhhccCcEEEecCCCCCCCCCCCCCCCccccCCCCCCCCCC
Q 003794 81 QPTAQQVLINAIS--AGPITVFVMGSHTNFAIFLMNNPHLKKNIEHIYVMGGAIRSDCFNSTNSSQSEQCDSIGNLYPDD 158 (795)
Q Consensus 81 ~~~Av~~li~~i~--~g~itlvaiGPLTNlA~al~~~P~l~~~ik~IviMGG~~~~~~~~~~~~~~~~~~~~~GN~~~~~ 158 (795)
+++|+++|+++++ +++||||++|||||||+|++++|+++++||+||||||++.. +||
T Consensus 96 ~~~a~~~i~~~~~~~~~~v~ila~GplTNlA~al~~~p~~~~~i~~iviMGG~~~~----------------~Gn----- 154 (295)
T cd00455 96 DPEAVQLLIDLIRKYPDEITIVALGPLTNLAMAFILDPDIKDRVKEIVIMGGAFLV----------------PGN----- 154 (295)
T ss_pred CcCHHHHHHHHHHhcCCCeEEEECCchHHHHHHHHHChHHHHhCCEEEEcCCccCC----------------CCC-----
Confidence 6799999999997 47899999999999999999999999999999999999854 499
Q ss_pred CCCCCccCCCCCHHHHHHHHhcCCCEEEecCCCccccCCCHHHHHHHHHhcCChHHHHHHHHHHHHHHhhcCCCCCCCCC
Q 003794 159 SNPYAEFNIFSDPFAAYTVLHSGIPVTIIPLDATKTIPVSENFFVEFERRQNTYEAQYCFQSLKMIRDTWSGSPPFHEAY 238 (795)
Q Consensus 159 ~tp~AEfN~~~DPeAA~iVl~sg~pitlVplDvT~~~~lt~~~~~~l~~~~~t~~a~~l~~~l~~~~~~~~~~~~~~~~~ 238 (795)
.+|.||||||+||+||++||+|+++++|+|||+|+++.+++++++++... +++.++|+.+++.+|.+.+.. .+..++
T Consensus 155 ~~~~aEfN~~~DP~AA~~Vl~s~~~i~~vpldvt~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 231 (295)
T cd00455 155 VTPVAEANFYGDPEAANIVFNSAKNLTIVPLDVTNQAVLTPPMVERIFEQ-GTSIGLLIKPMIDYYYKAYQK--PGIEGS 231 (295)
T ss_pred CCccchhhcccCHHHHHHHHhCCCCeEEecccceeeEeCCHHHHHHHHHh-CCcHHHHHHHHHHHHHHHHhc--CCCCcC
Confidence 68999999999999999999999999999999999999999999999874 578999999999888766543 345689
Q ss_pred cccccchHhHHhhhccCCCCCCCCCCccceEEEEEEEEecCccccccC
Q 003794 239 CMWDSFMAGVALSIMLNSSSHNGENACSEMEYMNLTVVTSNEPYGISD 286 (795)
Q Consensus 239 ~l~D~lA~a~al~p~~~~~~~~~~p~~~~~~~~~v~V~t~g~~~G~~~ 286 (795)
++||++|++++++ |++++.++.+|+|+++|.++|++.
T Consensus 232 ~~~D~lAv~~~~~-----------P~~~~~~~~~v~V~~~g~~~G~t~ 268 (295)
T cd00455 232 PIHDPLAVAYLLN-----------PSMFDYSKVPVDVDTDGLTRGQTI 268 (295)
T ss_pred CCChHHHHHHhcC-----------cccEEEEEEeEEEEeCCCCCceEE
Confidence 9999999999999 599999999999999998899875
No 30
>PF01156 IU_nuc_hydro: Inosine-uridine preferring nucleoside hydrolase; InterPro: IPR001910 Inosine-uridine preferring nucleoside hydrolase (3.2.2.1 from EC) (IU-nucleoside hydrolase or IUNH) is an enzyme first identified in protozoan [] that catalyses the hydrolysis of all of the commonly occuring purine and pyrimidine nucleosides into ribose and the associated base, but has a preference for inosine and uridine as substrates. This enzyme is important for these parasitic organisms, which are deficient in de novo synthesis of purines, to salvage the host purine nucleosides. IUNH from Crithidia fasciculata has been sequenced and characterised, it is an homotetrameric enzyme of subunits of 34 Kd. An histidine has been shown to be important for the catalytic mechanism, it acts as a proton donor to activate the hypoxanthine leaving group. A highly conserved region located in the N-terminal extremity contains four conserved aspartates that have been shown [] to be located in the active site cavity. IUNH is evolutionary related to a number of uncharacterised proteins from various biological sources. This entry represents the structural domain of IUNH.; PDB: 1EZR_D 2MAS_B 1MAS_A 3MKM_C 3MKN_C 2C40_A 3T8J_A 2FF2_B 1KIE_A 2FF1_A ....
Probab=100.00 E-value=3.5e-41 Score=366.87 Aligned_cols=218 Identities=29% Similarity=0.447 Sum_probs=176.5
Q ss_pred CC-CCCCccccCCCCCCCCCCccCCCCCCCCcccccCCcccccccccccccCCCCCCCcCCCCCCCCCCCCCCCCCCCCC
Q 003794 2 MN-RDDIPVGVGGEGGILPNGTILPDVGGYQPIIDQGMSTAGECRYRQAIPVGQRLYVNTNYGLRKAFLPQGGRKYAPLR 80 (795)
Q Consensus 2 ~g-r~dIPV~~Ga~~pl~~~~~~~~~v~g~~~~~~~g~~t~~~c~y~~~ip~~~~~~~hG~~Glg~~~lp~~~~~~~~~~ 80 (795)
+| |.|||||.|+..||.++... +..+||.+||++..+|.+... ...+
T Consensus 55 ~g~~~~iPV~~G~~~pl~~~~~~-------------------------------~~~~~g~~gl~~~~~~~~~~~-~~~~ 102 (312)
T PF01156_consen 55 AGGRDDIPVYKGADRPLVRPPEY-------------------------------APEIHGEDGLGDASLPEPEDE-PYPS 102 (312)
T ss_dssp TTTCSTS-EEEEESS-SSSSHHH-------------------------------HHHHHTTTSSTSS-HHSSSCH-CHBH
T ss_pred hcCCCccceeecchhhhhccccc-------------------------------hhhcccccCCCcccCcccccc-cccc
Confidence 65 88999999999999864331 246788999999767664332 1245
Q ss_pred CccHHHHHHHHhc--cCCeEEEEecchHHHHHHHHhCCchhhccCcEEEecCCCCCCCCCCCCCCCccccCCCCCCCCCC
Q 003794 81 QPTAQQVLINAIS--AGPITVFVMGSHTNFAIFLMNNPHLKKNIEHIYVMGGAIRSDCFNSTNSSQSEQCDSIGNLYPDD 158 (795)
Q Consensus 81 ~~~Av~~li~~i~--~g~itlvaiGPLTNlA~al~~~P~l~~~ik~IviMGG~~~~~~~~~~~~~~~~~~~~~GN~~~~~ 158 (795)
+.+|+++|+++++ +++|||||+|||||||+|++++|+++++|++||||||++.. .||
T Consensus 103 ~~~a~~~i~~~~~~~~~~vtiva~GplTNlA~al~~~P~~~~~i~~iviMGG~~~~----------------~Gn----- 161 (312)
T PF01156_consen 103 DEDAVDFIIELLKAYPGEVTIVAIGPLTNLALALRRDPEIAKKIKRIVIMGGAFDG----------------PGN----- 161 (312)
T ss_dssp SSBHHHHHHHHHHHSSSTEEEEECS-SHHHHHHHHHHGGHHGGEEEEEEE---SSS------------------S-----
T ss_pred cccHHHHHHHHHHhcCCcEEEEecCcchhHHHHHHhChHHHhhceEEEEECCcccc----------------CCC-----
Confidence 7899999999997 58899999999999999999999999999999999999996 499
Q ss_pred CCCCCccCCCCCHHHHHHHHhcCCCEEEecCCCccccCCCHHHHHHHHHhcCChHHHHHHHHHHHHHHhhcCCCCCCCCC
Q 003794 159 SNPYAEFNIFSDPFAAYTVLHSGIPVTIIPLDATKTIPVSENFFVEFERRQNTYEAQYCFQSLKMIRDTWSGSPPFHEAY 238 (795)
Q Consensus 159 ~tp~AEfN~~~DPeAA~iVl~sg~pitlVplDvT~~~~lt~~~~~~l~~~~~t~~a~~l~~~l~~~~~~~~~~~~~~~~~ 238 (795)
.+|.+|||||+||+||++||++++|++++|||+|+++.+++++++++....++++++|+.+++.++.+.+.+ . ..++
T Consensus 162 ~~~~aE~N~~~DP~AA~~Vl~s~~~i~~vpldvt~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~ 238 (312)
T PF01156_consen 162 VTPVAEFNFYCDPEAAQIVLESGIPITLVPLDVTHQVLLTPEFLDRLRAQSGSPLARFLRDLLRFYFDFYRD--G-SDGF 238 (312)
T ss_dssp SSSSC-HHHHHSHHHHHHHHCSSS-EEEE-HHHHTTSEEEHHHHHHHHHTCTCHHHHHHHHHHHHHHHHHHH--H-SSSE
T ss_pred CCccCCcCcccCHHHHHHHhhcCCCeEEEecCccccccCCHHHHHHHHhcCcchHHHHHHHHHHHHHhhhhh--c-cCCc
Confidence 799999999999999999999999999999999999999999999999844579999999999988776542 1 4689
Q ss_pred cccccchHhHH-hhhccCCCCCCCCCCccc-eEEEEEEEEecCc-cccccC
Q 003794 239 CMWDSFMAGVA-LSIMLNSSSHNGENACSE-MEYMNLTVVTSNE-PYGISD 286 (795)
Q Consensus 239 ~l~D~lA~a~a-l~p~~~~~~~~~~p~~~~-~~~~~v~V~t~g~-~~G~~~ 286 (795)
++||++|++++ ++| +++. +++++++|+++|. ++|++.
T Consensus 239 ~~~D~la~~~~~~~P-----------~~~~~~~~~~v~V~~~~~~~~G~t~ 278 (312)
T PF01156_consen 239 PLHDPLAAAYAELDP-----------ELFTEFERGPVDVETDGGLTRGQTV 278 (312)
T ss_dssp E-HHHHHHHHH-H-G-----------GGEEEEEEEEEEEESSSSTTTTEEE
T ss_pred ccCCHHHHHHHHhCC-----------ccceecceEEEEEEECCCCCCceEE
Confidence 99999999999 985 8866 9999999999974 888863
No 31
>cd02648 nuc_hydro_1 NH_1: A subgroup of nucleoside hydrolases. This group contains fungal proteins similar to nucleoside hydrolases. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity.
Probab=100.00 E-value=2.1e-39 Score=353.02 Aligned_cols=226 Identities=21% Similarity=0.277 Sum_probs=174.1
Q ss_pred CCc-cccCCCCCCCCCCccCCCCCCCCcccccCCcccccccccccccCCCCCCCcCCCCCCCCCC-CCCC---C------
Q 003794 6 DIP-VGVGGEGGILPNGTILPDVGGYQPIIDQGMSTAGECRYRQAIPVGQRLYVNTNYGLRKAFL-PQGG---R------ 74 (795)
Q Consensus 6 dIP-V~~Ga~~pl~~~~~~~~~v~g~~~~~~~g~~t~~~c~y~~~ip~~~~~~~hG~~Glg~~~l-p~~~---~------ 74 (795)
||| |+.|++.||+++...+ .++||.+|||+..+ ++.. .
T Consensus 78 ~iP~V~~Ga~~PL~~~~~~a-------------------------------~~~HG~dGlgg~~~~~p~~~p~~~~~~~~ 126 (367)
T cd02648 78 EKPIVASGSDQPLEGERLTA-------------------------------SYFHGRDGLSGVHWLHPDFTPVETWIPEI 126 (367)
T ss_pred CCCEEEcCCCcccCCCCccc-------------------------------CccCCCCCCCCccccCCcccccccccccc
Confidence 699 9999999998865422 35788999999853 2211 0
Q ss_pred --CCCCCCCccHHHHHHHHhc--c-CCeEEEEecchHHHHHHHHhCCchhhccCcEEEecCCCCCCCCCCCCCCCccccC
Q 003794 75 --KYAPLRQPTAQQVLINAIS--A-GPITVFVMGSHTNFAIFLMNNPHLKKNIEHIYVMGGAIRSDCFNSTNSSQSEQCD 149 (795)
Q Consensus 75 --~~~~~~~~~Av~~li~~i~--~-g~itlvaiGPLTNlA~al~~~P~l~~~ik~IviMGG~~~~~~~~~~~~~~~~~~~ 149 (795)
.. ..++++|+++|+++++ + ++|+||++|||||||+|++++|++.++||+||||||++..
T Consensus 127 ~~~~-~~~~~~A~~~i~~~~~~~p~~~itivalGPLTNiA~al~~~P~~~~~Ik~IviMGG~~~~--------------- 190 (367)
T cd02648 127 VAPL-TPSDKPAYDVILDILREEPDHTVTIAALGPLTNLAAAARKDPETFAKVGEVVVMGGAIDV--------------- 190 (367)
T ss_pred cccc-CcCCccHHHHHHHHHHhCCCCcEEEEEcccHHHHHHHHHHChHHHhhhcEEEEeCCcccC---------------
Confidence 01 2346789999999996 3 4699999999999999999999999999999999999875
Q ss_pred CCCCCCCCCCCCCCccCCCCCHHHHHHHHhc----------CCCEEEecCCCccccCCCHHHH-----HHHHH-hcCChH
Q 003794 150 SIGNLYPDDSNPYAEFNIFSDPFAAYTVLHS----------GIPVTIIPLDATKTIPVSENFF-----VEFER-RQNTYE 213 (795)
Q Consensus 150 ~~GN~~~~~~tp~AEfN~~~DPeAA~iVl~s----------g~pitlVplDvT~~~~lt~~~~-----~~l~~-~~~t~~ 213 (795)
+|| .+|.||||||+||+||++||++ ++|++|||||+|+++.++.+++ +++.. +.+++.
T Consensus 191 -~GN-----~tp~aEfNi~~DPeAA~iV~~~~~~~~~~s~~~~~i~mvpLDvT~~~~l~~~~~~~~~~~~l~~~~~~~~~ 264 (367)
T cd02648 191 -PGN-----TSPVAEFNCFADPYAAAVVIDEPPSTAPEARRKLPLQVFPLDITTGHTLPYSSLFATYVTPRDAPERGSPL 264 (367)
T ss_pred -CCC-----CCccchhhcccCHHHHHHHHhccccccccccCCCCeEEEeecCCCCeeeCHHHhhhhHHHHHHhhccCCch
Confidence 499 7999999999999999999984 4599999999999999999875 33343 135788
Q ss_pred HHHHHHHHH-----HHHHhhcCCCCCCC---CCcccccchHhHHhhhccCCCCCCCCCCccceEEEEEEEEecCc-cccc
Q 003794 214 AQYCFQSLK-----MIRDTWSGSPPFHE---AYCMWDSFMAGVALSIMLNSSSHNGENACSEMEYMNLTVVTSNE-PYGI 284 (795)
Q Consensus 214 a~~l~~~l~-----~~~~~~~~~~~~~~---~~~l~D~lA~a~al~p~~~~~~~~~~p~~~~~~~~~v~V~t~g~-~~G~ 284 (795)
++|+.+++. +|++.+.+. .+.. ++++||++|++++++|= -....+-|+.+++.++++|+|++.|+ +||+
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~lHD~lava~~i~p~-~~~~~~~~~~~~~~~~~~v~Ve~~g~~trG~ 342 (367)
T cd02648 265 ARWLEHVFISTFLTHPRAFTPEE-FLPDRSELFEMHDPLAVWYAIFAD-MPATGSIDGNGWKHTPRDFRVETSGQWTRGM 342 (367)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh-cCCCCccCCCCCcHHHhHhhcCcc-cccccccccceEEEEEecEEEEeCCCCCCce
Confidence 996555444 666655432 2222 44899999999999950 00001111228899999999999987 9999
Q ss_pred cC
Q 003794 285 SD 286 (795)
Q Consensus 285 ~~ 286 (795)
|.
T Consensus 343 tV 344 (367)
T cd02648 343 CV 344 (367)
T ss_pred EE
Confidence 75
No 32
>cd02652 nuc_hydro_2 NH_2: A subgroup of nucleoside hydrolases. This group contains eukaryotic and bacterial proteins similar to nucleoside hydrolases. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity.
Probab=100.00 E-value=1.3e-34 Score=310.26 Aligned_cols=226 Identities=20% Similarity=0.234 Sum_probs=163.7
Q ss_pred EEEEcCCC--chHHHHHHHHHhCCCCceeEEEEE-EeCCCCchhHhHHHHHHHHHHhCCCCCcEeecccccccCCCCCCC
Q 003794 409 VVFDIDMS--AGDFLALIYLLKLPVELINLKGIL-VSSTGWATSATVDVVYDLLHMMGRDDIPVGLGDVFAVGEVNPKFP 485 (795)
Q Consensus 409 VIiDtD~g--~DDalAL~~lL~~p~~~idl~gIt-v~Gn~~~~~a~~~~a~~iL~~~Gr~dIPV~~Ga~~pl~~~~~~~p 485 (795)
||||||+| +||++||+|++.+| +++|+||| +.||.+.. .++..++.++||.||||+.| .|+.....
T Consensus 1 vIlDTD~G~DiDDa~Al~lal~~p--~~~llgIT~~~GN~~~~----~~~~~~n~~~gr~dIPVg~~--~~~~~~~~--- 69 (293)
T cd02652 1 LILDTDIGGDPDDALALALAHALQ--KCDLLAVTITLADASAR----RAIDAVNRFYGRGDIPIGAD--YHGWPEDA--- 69 (293)
T ss_pred CEEeCCCCCChHHHHHHHHHhhCC--CCceEEEEecCCcccHh----HHHHHHHHhcCCCCCcEeeC--CCCCCCcc---
Confidence 69999999 69999999999999 89999999 67998754 24567788899999999765 44432210
Q ss_pred CCCCCCcccccccCCCCCCCccccccccCCCCCCccccccccccccCCCCCCCCCccCchhHHHHHHHHHHhcCCCCcEE
Q 003794 486 PIGGCKYAKAIPLGSGGFLDSDTLYGLARDLPRSPRRYTAENSVRFGASQDNDDPELRQPLAVDVWKSIVESIEPGSKIT 565 (795)
Q Consensus 486 ~~~~~~~~~~~~hG~dGlgd~~~~~g~~~~lP~~~~~~~~~~~~~~~~p~~~d~~~~~~~~A~~~~~~i~~~~~~~~~Vt 565 (795)
..|+..+.++. .+|+.... ....++|+++|++++++ .++++||
T Consensus 70 ----------~~~~~~~~~~~--------~~~~~~~~------------------~~~~~~A~~~i~~~l~~-~~~~~vt 112 (293)
T cd02652 70 ----------KDHAKFLLEGD--------RLHHDLES------------------AEDALDAVKALRRLLAS-AEDASVT 112 (293)
T ss_pred ----------ccccceeCCCC--------CCCCcccc------------------cccCccHHHHHHHHHHh-cCCCCEE
Confidence 01222222111 12211000 01235799999988886 4467999
Q ss_pred EEEecchhHHHHHH-h------CCCc-ccccCeEEEecCCCCCCCCCCCccccCCCCcccCCCCCCHHHHHHHHhc----
Q 003794 566 ILTNGPLTNLAQII-G------LQNS-SSVIQDVYIVGGNKGQDNEKGNVFTVPSSKYAEFNMFLDPLAAKAVFES---- 633 (795)
Q Consensus 566 Ila~GPLTNLA~al-~------~P~i-~~~I~~vviMGG~~~~~~~~GNv~~~~~~~~aEfN~~~DP~AA~iV~~s---- 633 (795)
||++|||||||.++ + +|++ .++|++|+||||++. ...||++ .+|||+++||+||++||++
T Consensus 113 ivaiGplTNlA~ll~~~~d~l~~pel~~~kvk~lviMGG~~~--~~~Gn~~------~aE~N~~~Dp~AA~~V~~~~~~~ 184 (293)
T cd02652 113 IVSIGPLTNLAALLDADADPLTGPELVRQKVKRLVVMGGAFY--DPDGNVQ------HREYNFVTDPKAAQRVAGRAQHL 184 (293)
T ss_pred EEEcccHHHHHHHHHhccccccCcHHHHhhCCEEEEeCCCcc--CCCCCcc------hhhhhcccCHHHHHHHHhccccc
Confidence 99999999999999 9 9999 589999999999983 2468874 6999999999999999999
Q ss_pred CCceEE--eccccchhccccHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHhcccccccCccccceeeeeeeccCC
Q 003794 634 KLEIKL--IPLHMQRRVASFFKILHKLRDRKKTPESVFSQRLLQGLMTLQQSHHSYHHVDTFLGEVLGAVILGGNP 707 (795)
Q Consensus 634 ~~~itl--ipldvt~~~~~~~~~l~~l~~~~~tp~a~fl~~ll~~~~~~~~~~~~~~~~~~~l~D~Laaa~l~~p~ 707 (795)
++|++| +++|+++++..... +....... + .+.+.|..+ .. ...+||+++++|++++.
T Consensus 185 g~p~~~V~~~~ev~~~~~~~~~-~~~~~~~~-~-------p~~~~y~~~-------~~-~~~~wD~~t~l~av~~~ 243 (293)
T cd02652 185 GIPVRIVWSGYELGEAVSYPHV-LVIAHPFN-T-------PVFAAYWPR-------SH-RRPLWDPLTLLAAVRGG 243 (293)
T ss_pred CCCEEEEecCHHHhccccCchh-hhhccccc-c-------hHHHHHHhc-------cC-CccchHHHHHHHeeCCc
Confidence 899998 69999999876553 11111111 2 222333221 11 26799999999999994
No 33
>KOG2938 consensus Predicted inosine-uridine preferring nucleoside hydrolase [Nucleotide transport and metabolism]
Probab=99.96 E-value=3.1e-29 Score=271.70 Aligned_cols=216 Identities=23% Similarity=0.269 Sum_probs=170.5
Q ss_pred CCCCCCCccccCCCCCCCCCCccCCCCCCCCcccccCCcccccccccccccCCCCCCCcCCCCCCCCCCCCCCCCCCCCC
Q 003794 1 MMNRDDIPVGVGGEGGILPNGTILPDVGGYQPIIDQGMSTAGECRYRQAIPVGQRLYVNTNYGLRKAFLPQGGRKYAPLR 80 (795)
Q Consensus 1 ~~gr~dIPV~~Ga~~pl~~~~~~~~~v~g~~~~~~~g~~t~~~c~y~~~ip~~~~~~~hG~~Glg~~~lp~~~~~~~~~~ 80 (795)
.+||.|||||+|+.+||.++.. ..+.++||.||++|..+|.+... .+
T Consensus 74 l~~r~dIPV~~Ga~kpl~~~~~------------------------------~~a~~~hG~dGl~d~~~~~~~~~---~~ 120 (350)
T KOG2938|consen 74 LLGRLDIPVYEGAAKPLIRSPN------------------------------DWANAFHGIDGLGDILLPPPRDD---IN 120 (350)
T ss_pred hcCCcCCCchhcccccccCCcc------------------------------chhhhhccccccCCcccCCcccc---cc
Confidence 3799999999999999998764 12357788999999988885543 45
Q ss_pred CccHHHHHHHHhc--cCCeEEEEecchHHHHHHHHhCCchhhccCcEEEecCCCCCCCCCCCCCCCccccCCCCCCCCCC
Q 003794 81 QPTAQQVLINAIS--AGPITVFVMGSHTNFAIFLMNNPHLKKNIEHIYVMGGAIRSDCFNSTNSSQSEQCDSIGNLYPDD 158 (795)
Q Consensus 81 ~~~Av~~li~~i~--~g~itlvaiGPLTNlA~al~~~P~l~~~ik~IviMGG~~~~~~~~~~~~~~~~~~~~~GN~~~~~ 158 (795)
.++++.++++... +++||+|++|||||||++++++|++.+++|+|+||||++.+ .||
T Consensus 121 ~~~~~~~~i~~~~~~p~~It~va~GPLTNlAla~~~~pd~~~~v~~ivimGG~~~~----------------~gn----- 179 (350)
T KOG2938|consen 121 VGHGAEFAIEQDIAYPGEITIVAYGPLTNLALALALDPDFLKNVKRIVIMGGNYYG----------------NGN----- 179 (350)
T ss_pred ccccHHHHHHHhhcCCCCceEEEeccchHHHHHhhcChhHhhccccEEEecccccc----------------ccC-----
Confidence 6788888887765 69999999999999999999999999999999999999985 388
Q ss_pred CCCCCccCCCCCHHHHHHHHhcC-CCEEEecCCCccccCCCHHHHHHHHHh--cCChHHHHHHHHHHHHHHhhcCC--CC
Q 003794 159 SNPYAEFNIFSDPFAAYTVLHSG-IPVTIIPLDATKTIPVSENFFVEFERR--QNTYEAQYCFQSLKMIRDTWSGS--PP 233 (795)
Q Consensus 159 ~tp~AEfN~~~DPeAA~iVl~sg-~pitlVplDvT~~~~lt~~~~~~l~~~--~~t~~a~~l~~~l~~~~~~~~~~--~~ 233 (795)
.++.|||||+.|||||++||++. ++++++||++|++..+|....-++... .++++.-|+..... .|... ..
T Consensus 180 v~~~AefN~~~DPeAA~~vl~~~k~~~~v~pi~i~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 255 (350)
T KOG2938|consen 180 VTHGAEFNFYRDPEAAHTVLTRTKDPITVGPINITHQGSLTNLALIRLSNRKNKHPILESYLSLGTA----RQQVYNGAY 255 (350)
T ss_pred cCccccccccCChHHHHHHHhcCCCceeEeeeeeeeccccchhhhhhhhhhccCCchhHHhhhhhHH----hhhcccccC
Confidence 79999999999999999999997 588999999999999998777665443 23444445443322 22221 13
Q ss_pred CCCCCcccccchHhHHhhhccCCCCCCCCCCccc--eEEEEEEEEecCcccccc
Q 003794 234 FHEAYCMWDSFMAGVALSIMLNSSSHNGENACSE--MEYMNLTVVTSNEPYGIS 285 (795)
Q Consensus 234 ~~~~~~l~D~lA~a~al~p~~~~~~~~~~p~~~~--~~~~~v~V~t~g~~~G~~ 285 (795)
+..+...||..+++.++.| +.+- ...+.+.+.+...++|+.
T Consensus 256 G~~~~~~~d~~~~a~~i~~-----------d~~~~~~~~~~~~~~~~~~~~~~~ 298 (350)
T KOG2938|consen 256 GNIFTPYPDNIYVAFAIFP-----------DPLAAKTVYVSVDVLLDSPTRGQM 298 (350)
T ss_pred CccCCCCCcHHHHHHHhhh-----------hhhhhhhhhheeeeeecCcceeee
Confidence 4445668899898888885 5544 447777888888888875
No 34
>cd02652 nuc_hydro_2 NH_2: A subgroup of nucleoside hydrolases. This group contains eukaryotic and bacterial proteins similar to nucleoside hydrolases. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity.
Probab=99.94 E-value=2.2e-26 Score=246.90 Aligned_cols=154 Identities=24% Similarity=0.333 Sum_probs=116.0
Q ss_pred CCccHHHHHHHHhc---cCCeEEEEecchHHHHHHHHh------CCch-hhccCcEEEecCCCCCCCCCCCCCCCccccC
Q 003794 80 RQPTAQQVLINAIS---AGPITVFVMGSHTNFAIFLMN------NPHL-KKNIEHIYVMGGAIRSDCFNSTNSSQSEQCD 149 (795)
Q Consensus 80 ~~~~Av~~li~~i~---~g~itlvaiGPLTNlA~al~~------~P~l-~~~ik~IviMGG~~~~~~~~~~~~~~~~~~~ 149 (795)
+..+|+++|+++++ +++||||++|||||||+++++ +|++ +++||+||||||++...
T Consensus 91 ~~~~A~~~i~~~l~~~~~~~vtivaiGplTNlA~ll~~~~d~l~~pel~~~kvk~lviMGG~~~~~-------------- 156 (293)
T cd02652 91 DALDAVKALRRLLASAEDASVTIVSIGPLTNLAALLDADADPLTGPELVRQKVKRLVVMGGAFYDP-------------- 156 (293)
T ss_pred cCccHHHHHHHHHHhcCCCCEEEEEcccHHHHHHHHHhccccccCcHHHHhhCCEEEEeCCCccCC--------------
Confidence 35689999999996 478999999999999999999 9999 58999999999998421
Q ss_pred CCCCCCCCCCCCCCccCCCCCHHHHHHHHhc----CCCEEE--ecCCCccccCCCHHHHHHHHHhcCChHHHHHHHHHHH
Q 003794 150 SIGNLYPDDSNPYAEFNIFSDPFAAYTVLHS----GIPVTI--IPLDATKTIPVSENFFVEFERRQNTYEAQYCFQSLKM 223 (795)
Q Consensus 150 ~~GN~~~~~~tp~AEfN~~~DPeAA~iVl~s----g~pitl--VplDvT~~~~lt~~~~~~l~~~~~t~~a~~l~~~l~~ 223 (795)
.|| .+ .+||||++||+||++||++ ++|++| +++|+|+++.......... ..++|. .+ .
T Consensus 157 -~Gn-----~~-~aE~N~~~Dp~AA~~V~~~~~~~g~p~~~V~~~~ev~~~~~~~~~~~~~~--~~~~p~----~~---~ 220 (293)
T cd02652 157 -DGN-----VQ-HREYNFVTDPKAAQRVAGRAQHLGIPVRIVWSGYELGEAVSYPHVLVIAH--PFNTPV----FA---A 220 (293)
T ss_pred -CCC-----cc-hhhhhcccCHHHHHHHHhcccccCCCEEEEecCHHHhccccCchhhhhcc--cccchH----HH---H
Confidence 488 45 9999999999999999999 899998 6999999987777522111 111221 11 1
Q ss_pred HHHhhcCCCCCCCCCcccccchHhHHhhhccCCCCCCCCCCccceEE-----EEEEEEecC
Q 003794 224 IRDTWSGSPPFHEAYCMWDSFMAGVALSIMLNSSSHNGENACSEMEY-----MNLTVVTSN 279 (795)
Q Consensus 224 ~~~~~~~~~~~~~~~~l~D~lA~a~al~p~~~~~~~~~~p~~~~~~~-----~~v~V~t~g 279 (795)
|.. | ....++||++|+++++.| ...+|+... ..|+|..+|
T Consensus 221 y~~-~------~~~~~~wD~~t~l~av~~---------~~~~F~~~~~~~g~g~v~~~~~G 265 (293)
T cd02652 221 YWP-R------SHRRPLWDPLTLLAAVRG---------GGMLFDLREVQLGPGRVEVDSSG 265 (293)
T ss_pred HHh-c------cCCccchHHHHHHHeeCC---------cCCccccccccCCCceEEEcCCC
Confidence 111 1 123799999999999986 123666433 556665544
No 35
>PF07632 DUF1593: Protein of unknown function (DUF1593); InterPro: IPR011483 This is a family of proteins found in Rhodopirellula baltica that are predicted to be secreted. Also, a member has been identified in Caulobacter crescentus (Caulobacter vibrioides) (Q9AAT9 from SWISSPROT). These proteins may be related to IPR001910 from INTERPRO.; PDB: 2YHG_A.
Probab=95.63 E-value=0.016 Score=61.63 Aligned_cols=144 Identities=19% Similarity=0.337 Sum_probs=76.4
Q ss_pred cEEEEcCC--CchHHHHHHHHHhCCCCceeEEEEEEeCCCCchh-HhHHHHHHHHHHhCCCCCcEeecccccccCCCCCC
Q 003794 408 PVVFDIDM--SAGDFLALIYLLKLPVELINLKGILVSSTGWATS-ATVDVVYDLLHMMGRDDIPVGLGDVFAVGEVNPKF 484 (795)
Q Consensus 408 kVIiDtD~--g~DDalAL~~lL~~p~~~idl~gItv~Gn~~~~~-a~~~~a~~iL~~~Gr~dIPV~~Ga~~pl~~~~~~~ 484 (795)
+|||=||+ -+||...|+-+|..-. +|||.||+.+...|... ...+...++++.++. ..| -|....+-|
T Consensus 1 RviV~TDi~~EpDD~~SlvR~LlYsN-e~dieGivattS~~~~~~~~~~~i~~iIdaY~k-v~p-------NL~~H~~~y 71 (260)
T PF07632_consen 1 RVIVLTDIGNEPDDAQSLVRLLLYSN-EFDIEGIVATTSTWHWSGVHPEWIHRIIDAYEK-VYP-------NLNKHAPGY 71 (260)
T ss_dssp EEEEEE-TTS-THHHHHHHHHHHTGG-GSEEEEEEE--BTTB------HHHHHHHHHHHH-HHH-------HHTTTSTT-
T ss_pred CEEEeCCCCCCCchHHHHHHHHHhcc-ccceeEEEEecccccCCCCCHHHHHHHHHHHHH-HHH-------HHHhcCCCC
Confidence 68999999 4999999997775542 89999999432233222 122345566666653 111 122222222
Q ss_pred CCCCCCCcccc-cccCCCCCCCccccccccCCCCCCccccccccccccCCCCCCCCCccCchhHHHHHHHHHHhcCCCCc
Q 003794 485 PPIGGCKYAKA-IPLGSGGFLDSDTLYGLARDLPRSPRRYTAENSVRFGASQDNDDPELRQPLAVDVWKSIVESIEPGSK 563 (795)
Q Consensus 485 p~~~~~~~~~~-~~hG~dGlgd~~~~~g~~~~lP~~~~~~~~~~~~~~~~p~~~d~~~~~~~~A~~~~~~i~~~~~~~~~ 563 (795)
|.- .+-.+ +..|.-. ||+ +-.. +-....+.++|++.+.. ..+.+
T Consensus 72 Ps~---e~L~s~vk~G~~~-------yg~---------------------~~~G---~~~~s~GS~lIi~~~~~-~d~rP 116 (260)
T PF07632_consen 72 PSP---EYLRSIVKQGNPV-------YGM---------------------PAVG---EGKDSEGSELIIEALDK-DDPRP 116 (260)
T ss_dssp --H---HHHHHTEEE--SS--------GG---------------------GG-S---TT---HHHHHHHHHHHS-S-SS-
T ss_pred CCH---HHHHHHHccCCcc-------cCc---------------------ccCC---CCCCChHHHHHHHHHcC-CCCCC
Confidence 211 11111 1122211 111 0000 11125677888888775 45689
Q ss_pred EEEEEecchhHHHHHH-h---------CCCcccccCeEEEecC
Q 003794 564 ITILTNGPLTNLAQII-G---------LQNSSSVIQDVYIVGG 596 (795)
Q Consensus 564 VtIla~GPLTNLA~al-~---------~P~i~~~I~~vviMGG 596 (795)
|-|++=|-...||.|| . .+.+.+|| +||..++
T Consensus 117 Lwi~~WGG~ntlAqAL~~i~~~~~~~~~~~~~~Kl-rvy~I~d 158 (260)
T PF07632_consen 117 LWILVWGGTNTLAQALWDIKETRSPEEAARFVSKL-RVYSISD 158 (260)
T ss_dssp EEEEESS-SHHHHHHHHHHHHHS-HHHHHHHHHTE-EEEEES-
T ss_pred EEEEecCCHHHHHHHHHHHHHhcCHHHHHHHHhhE-EEEeccC
Confidence 9999999999999999 6 57788898 5887755
No 36
>PF10609 ParA: ParA/MinD ATPase like; InterPro: IPR019591 This entry represents ATPases involved in plasmid partitioning []. It also contains cytosolic Fe-S cluster assembling factors, NBP35 and CFD1 which are required for biogenesis and export of both ribosomal subunits probably through assembling the ISCs in RLI1, a protein which performs rRNA processing and ribosome export [, , ].; PDB: 2PH1_A 3KB1_B.
Probab=53.75 E-value=21 Score=31.65 Aligned_cols=59 Identities=22% Similarity=0.358 Sum_probs=32.1
Q ss_pred cEEEEcCCCchHH-HHHHHHHhCCCCceeEEEEEE-eCCCCchhHhHHHHHHHHHHhCCCCCcEeecccccc
Q 003794 408 PVVFDIDMSAGDF-LALIYLLKLPVELINLKGILV-SSTGWATSATVDVVYDLLHMMGRDDIPVGLGDVFAV 477 (795)
Q Consensus 408 kVIiDtD~g~DDa-lAL~~lL~~p~~~idl~gItv-~Gn~~~~~a~~~~a~~iL~~~Gr~dIPV~~Ga~~pl 477 (795)
-+|||+-+|.+|. ++|+-.+... . +|.| ++..- +...+++.++++.+..+||. |-...|
T Consensus 3 ~LiiD~PPGTgD~~l~~~~~~~~~----g--~ivVTTPq~l----a~~dv~r~~~~~~~~~vpil-GvVENM 63 (81)
T PF10609_consen 3 YLIIDLPPGTGDEHLTLMQYLPID----G--AIVVTTPQEL----ALADVRRAIDMFRKLNVPIL-GVVENM 63 (81)
T ss_dssp EEEEE--SCSSSHHHHHHHHH--S----E--EEEEE-CCC------HHHHHHHHHHHHCTT-EEE-EEEECT
T ss_pred EEEEeCCCCCCcHHHHHHHhCCCC----e--EEEEeCCHHH----HHHHHHHHHHHHHhcCCCcE-EEEECC
Confidence 3799999996655 5655555422 1 2333 33322 33457889999988899985 444444
No 37
>PRK09802 DNA-binding transcriptional regulator AgaR; Provisional
Probab=48.62 E-value=56 Score=35.30 Aligned_cols=60 Identities=15% Similarity=0.341 Sum_probs=45.6
Q ss_pred CcEEEEEecchhHHHHHH-hCCCcccccCeEEEecCCCCCCCCCCCccccCCCCcccCCCCCCHHHHHHHHhcCCceEEe
Q 003794 562 SKITILTNGPLTNLAQII-GLQNSSSVIQDVYIVGGNKGQDNEKGNVFTVPSSKYAEFNMFLDPLAAKAVFESKLEIKLI 640 (795)
Q Consensus 562 ~~VtIla~GPLTNLA~al-~~P~i~~~I~~vviMGG~~~~~~~~GNv~~~~~~~~aEfN~~~DP~AA~iV~~s~~~itli 640 (795)
.++||+++.. ++|..+ ..|++ +|++.||.+. .+.+.+..|.|.+.+=+-..++.++
T Consensus 129 ~~ltVvTnsl--~ia~~l~~~~~~-----~v~llGG~~~----------------~~~~~~~G~~a~~~l~~~~~d~afi 185 (269)
T PRK09802 129 TDVIAMTNGM--NVANALLEAEGV-----ELLMTGGHLR----------------RQSQSFYGDQAEQSLQNYHFDMLFL 185 (269)
T ss_pred CCeEEEeCCH--HHHHHHHhCCCC-----EEEEECCEEe----------------cCCCceECHHHHHHHHhccCCEEEE
Confidence 3599999874 677777 77775 6999999993 3345568899999888877888887
Q ss_pred cccc
Q 003794 641 PLHM 644 (795)
Q Consensus 641 pldv 644 (795)
+-+-
T Consensus 186 g~~g 189 (269)
T PRK09802 186 GVDA 189 (269)
T ss_pred cCce
Confidence 7553
No 38
>PF00455 DeoRC: DeoR C terminal sensor domain; InterPro: IPR014036 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after Escherichia coli deoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerization domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].
Probab=42.01 E-value=68 Score=31.82 Aligned_cols=60 Identities=22% Similarity=0.347 Sum_probs=45.6
Q ss_pred CcEEEEEecchhHHHHHH-hCCCcccccCeEEEecCCCCCCCCCCCccccCCCCcccCCCCCCHHHHHHHHhcCCceEEe
Q 003794 562 SKITILTNGPLTNLAQII-GLQNSSSVIQDVYIVGGNKGQDNEKGNVFTVPSSKYAEFNMFLDPLAAKAVFESKLEIKLI 640 (795)
Q Consensus 562 ~~VtIla~GPLTNLA~al-~~P~i~~~I~~vviMGG~~~~~~~~GNv~~~~~~~~aEfN~~~DP~AA~iV~~s~~~itli 640 (795)
.++||++... ++|..+ ..|++ +|+++||.+. .+...+..|.|.+.+-+-..++.++
T Consensus 42 ~~ltVvTnsl--~ia~~l~~~~~~-----~vi~~GG~~~----------------~~~~~~~G~~a~~~l~~~~~d~afi 98 (161)
T PF00455_consen 42 KNLTVVTNSL--PIANELSENPNI-----EVILLGGEVN----------------PKSLSFVGPIALEALRQFRFDKAFI 98 (161)
T ss_pred CceEEEECCH--HHHHHHHhcCce-----EEEEeCCEEE----------------cCCCcEECchHHHHHHhhccceEEe
Confidence 3799999874 567777 77755 7999999993 3334457889988888878888887
Q ss_pred cccc
Q 003794 641 PLHM 644 (795)
Q Consensus 641 pldv 644 (795)
+-+-
T Consensus 99 ~~~g 102 (161)
T PF00455_consen 99 GADG 102 (161)
T ss_pred cccE
Confidence 7554
No 39
>PRK13509 transcriptional repressor UlaR; Provisional
Probab=33.40 E-value=1.3e+02 Score=32.13 Aligned_cols=58 Identities=19% Similarity=0.158 Sum_probs=41.0
Q ss_pred cEEEEEecchhHHHHHH-hCCCcccccCeEEEecCCCCCCCCCCCccccCCCCcccCCCCCCHHHHHHHHhcCCceEEec
Q 003794 563 KITILTNGPLTNLAQII-GLQNSSSVIQDVYIVGGNKGQDNEKGNVFTVPSSKYAEFNMFLDPLAAKAVFESKLEIKLIP 641 (795)
Q Consensus 563 ~VtIla~GPLTNLA~al-~~P~i~~~I~~vviMGG~~~~~~~~GNv~~~~~~~~aEfN~~~DP~AA~iV~~s~~~itlip 641 (795)
++||++++. ++|.++ ..|++ ++++.||.++ .+.+.+..|. ++.+-+-..++.+++
T Consensus 116 ~ltVvTnsl--~ia~~l~~~~~~-----~v~l~GG~~~----------------~~~~~~~G~~-~~~l~~~~~d~aFig 171 (251)
T PRK13509 116 PVQIITNYL--PLANYLIDQEHD-----SVIIMGGQYN----------------KSQSITLSPQ-GSENSLYAGHWMFTS 171 (251)
T ss_pred CeEEEeCCH--HHHHHHHhCCCC-----EEEEECCeEc----------------CCcceeECHH-HHHHHhCcCCEEEEC
Confidence 599999887 788888 77775 6999999993 2334557886 455544466777776
Q ss_pred ccc
Q 003794 642 LHM 644 (795)
Q Consensus 642 ldv 644 (795)
-+-
T Consensus 172 ~~g 174 (251)
T PRK13509 172 GKG 174 (251)
T ss_pred CCc
Confidence 553
No 40
>PF07632 DUF1593: Protein of unknown function (DUF1593); InterPro: IPR011483 This is a family of proteins found in Rhodopirellula baltica that are predicted to be secreted. Also, a member has been identified in Caulobacter crescentus (Caulobacter vibrioides) (Q9AAT9 from SWISSPROT). These proteins may be related to IPR001910 from INTERPRO.; PDB: 2YHG_A.
Probab=33.29 E-value=46 Score=35.89 Aligned_cols=48 Identities=17% Similarity=0.437 Sum_probs=38.8
Q ss_pred ccHHHHHHHHhc---cCCeEEEEecchHHHHHHHHh---------CCchhhccCcEEEecC
Q 003794 82 PTAQQVLINAIS---AGPITVFVMGSHTNFAIFLMN---------NPHLKKNIEHIYVMGG 130 (795)
Q Consensus 82 ~~Av~~li~~i~---~g~itlvaiGPLTNlA~al~~---------~P~l~~~ik~IviMGG 130 (795)
.++.+.|++.+. +.||.|.+=|=...||.||.. .+.|.+|+ +||..++
T Consensus 99 s~GS~lIi~~~~~~d~rPLwi~~WGG~ntlAqAL~~i~~~~~~~~~~~~~~Kl-rvy~I~d 158 (260)
T PF07632_consen 99 SEGSELIIEALDKDDPRPLWILVWGGTNTLAQALWDIKETRSPEEAARFVSKL-RVYSISD 158 (260)
T ss_dssp -HHHHHHHHHHHSS-SS-EEEEESS-SHHHHHHHHHHHHHS-HHHHHHHHHTE-EEEEES-
T ss_pred ChHHHHHHHHHcCCCCCCEEEEecCCHHHHHHHHHHHHHhcCHHHHHHHHhhE-EEEeccC
Confidence 578899999986 478999999999999999998 78899999 6777664
No 41
>PRK13509 transcriptional repressor UlaR; Provisional
Probab=30.40 E-value=1.9e+02 Score=30.86 Aligned_cols=46 Identities=17% Similarity=0.343 Sum_probs=30.5
Q ss_pred ccHHHHHHHHhccCCeEEEEecchHHHHHHHHhCCchhhccCcEEEecCCCCC
Q 003794 82 PTAQQVLINAISAGPITVFVMGSHTNFAIFLMNNPHLKKNIEHIYVMGGAIRS 134 (795)
Q Consensus 82 ~~Av~~li~~i~~g~itlvaiGPLTNlA~al~~~P~l~~~ik~IviMGG~~~~ 134 (795)
.+-+..|++.+...++|||+.+. ++|.+|..+|.+ ++++.||.+..
T Consensus 102 GsT~~~la~~L~~~~ltVvTnsl--~ia~~l~~~~~~-----~v~l~GG~~~~ 147 (251)
T PRK13509 102 GSTAFLLGRELCGKPVQIITNYL--PLANYLIDQEHD-----SVIIMGGQYNK 147 (251)
T ss_pred cHHHHHHHHHhCCCCeEEEeCCH--HHHHHHHhCCCC-----EEEEECCeEcC
Confidence 34444566666433577777665 677777766653 68999999875
No 42
>PRK10681 DNA-binding transcriptional repressor DeoR; Provisional
Probab=28.71 E-value=2e+02 Score=30.71 Aligned_cols=59 Identities=12% Similarity=0.028 Sum_probs=43.1
Q ss_pred CcEEEEEecchhHHHHHH-hCCCcccccCeEEEecCCCCCCCCCCCccccCCCCcccCCCCCCHHHHHHHHhcCCceEEe
Q 003794 562 SKITILTNGPLTNLAQII-GLQNSSSVIQDVYIVGGNKGQDNEKGNVFTVPSSKYAEFNMFLDPLAAKAVFESKLEIKLI 640 (795)
Q Consensus 562 ~~VtIla~GPLTNLA~al-~~P~i~~~I~~vviMGG~~~~~~~~GNv~~~~~~~~aEfN~~~DP~AA~iV~~s~~~itli 640 (795)
.++||+++.. ++|..+ ..|++ +|++.||.++ .+.+.+..+.|.+.+-+...++.++
T Consensus 115 ~~ltvvTnsl--~i~~~l~~~~~~-----~villGG~~~----------------~~~~~~~G~~~~~~l~~~~~D~afi 171 (252)
T PRK10681 115 LPFTAVCYSL--NTFLALQEKPHC-----RAILCGGEFH----------------ASNAIFKPLDFQQTLDNICPDIAFY 171 (252)
T ss_pred CCeEEEECCH--HHHHHHhhCCCC-----EEEEECcEEe----------------cCcceeeCHHHHHHHHhhCCCEEEE
Confidence 3599999854 456677 67776 6999999993 2234457888888887777888887
Q ss_pred ccc
Q 003794 641 PLH 643 (795)
Q Consensus 641 pld 643 (795)
+-+
T Consensus 172 g~~ 174 (252)
T PRK10681 172 SAA 174 (252)
T ss_pred eCc
Confidence 754
No 43
>PRK09802 DNA-binding transcriptional regulator AgaR; Provisional
Probab=27.78 E-value=2.1e+02 Score=30.84 Aligned_cols=73 Identities=15% Similarity=0.217 Sum_probs=47.9
Q ss_pred ccHHHHHHHHhcc-CCeEEEEecchHHHHHHHHhCCchhhccCcEEEecCCCCCCCCCCCCCCCccccCCCCCCCCCCCC
Q 003794 82 PTAQQVLINAISA-GPITVFVMGSHTNFAIFLMNNPHLKKNIEHIYVMGGAIRSDCFNSTNSSQSEQCDSIGNLYPDDSN 160 (795)
Q Consensus 82 ~~Av~~li~~i~~-g~itlvaiGPLTNlA~al~~~P~l~~~ik~IviMGG~~~~~~~~~~~~~~~~~~~~~GN~~~~~~t 160 (795)
.+-...|++.+.. .++|||+... ++|..+...|.+ +|++.||.+..
T Consensus 115 GtT~~~la~~L~~~~~ltVvTnsl--~ia~~l~~~~~~-----~v~llGG~~~~-------------------------- 161 (269)
T PRK09802 115 GTTTFEIARLMRKHTDVIAMTNGM--NVANALLEAEGV-----ELLMTGGHLRR-------------------------- 161 (269)
T ss_pred chHHHHHHHhcCcCCCeEEEeCCH--HHHHHHHhCCCC-----EEEEECCEEec--------------------------
Confidence 3444556666543 3577777653 566666666653 69999999985
Q ss_pred CCCccCCCCCHHHHHHHHhcCCCEEEecCC
Q 003794 161 PYAEFNIFSDPFAAYTVLHSGIPVTIIPLD 190 (795)
Q Consensus 161 p~AEfN~~~DPeAA~iVl~sg~pitlVplD 190 (795)
+.+.+..|.|.+.+=+-...+.+++.+
T Consensus 162 ---~~~~~~G~~a~~~l~~~~~d~afig~~ 188 (269)
T PRK09802 162 ---QSQSFYGDQAEQSLQNYHFDMLFLGVD 188 (269)
T ss_pred ---CCCceECHHHHHHHHhccCCEEEEcCc
Confidence 234557788887776656677777665
No 44
>PF03054 tRNA_Me_trans: tRNA methyl transferase; InterPro: IPR004506 tRNA-specific 2-thiouridylase catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.; GO: 0016740 transferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 2DET_A 2DER_A 2DEU_A 2HMA_A.
Probab=25.37 E-value=2.2e+02 Score=32.26 Aligned_cols=59 Identities=14% Similarity=0.126 Sum_probs=36.6
Q ss_pred CcEEEEcCCCchHHHHHHHHHhCCCCceeEEEEE-EeCCCCch-------hHhHHHHHHHHHHhCCCCCcEee
Q 003794 407 KPVVFDIDMSAGDFLALIYLLKLPVELINLKGIL-VSSTGWAT-------SATVDVVYDLLHMMGRDDIPVGL 471 (795)
Q Consensus 407 kkVIiDtD~g~DDalAL~~lL~~p~~~idl~gIt-v~Gn~~~~-------~a~~~~a~~iL~~~Gr~dIPV~~ 471 (795)
|+|++=|-.|+|-++|.++|... ..||+||+ ........ ...++.|+++.+.+| ||.+.
T Consensus 1 ~kV~vamSGGVDSsvaA~LLk~~---G~~V~Gv~m~~~~~~~~~~~~c~~~~d~~~a~~va~~Lg---Ip~~v 67 (356)
T PF03054_consen 1 KKVLVAMSGGVDSSVAAALLKEQ---GYDVIGVTMRNWDEEDESGKSCCSEEDIEDARRVAEKLG---IPHYV 67 (356)
T ss_dssp -EEEEE--SSHHHHHHHHHHHHC---T-EEEEEEEE-SS-SSSHH-HHHHHHHHHHHHHHHHHHT-----EEE
T ss_pred CeEEEEccCCHHHHHHHHHHHhh---cccceEEEEEEeccccccCCCCCchhhHHHHHHHHHhcC---CCEEE
Confidence 57999999999999998887775 69999999 44332111 112456778888776 67654
No 45
>PF14097 SpoVAE: Stage V sporulation protein AE1
Probab=24.02 E-value=99 Score=31.29 Aligned_cols=54 Identities=26% Similarity=0.152 Sum_probs=38.3
Q ss_pred cchhhhcccccCCCCCCCcEEEEcCC----CchHHHHHHHHHhCCCCceeEEEEE-EeCCCC
Q 003794 390 YYEEILRKPDFGKKLMGKPVVFDIDM----SAGDFLALIYLLKLPVELINLKGIL-VSSTGW 446 (795)
Q Consensus 390 ~~~~~~~~~~~~~~~~~kkVIiDtD~----g~DDalAL~~lL~~p~~~idl~gIt-v~Gn~~ 446 (795)
...|.|-+-..+.+..+.-|.||--. |.+ =-||.|.+.+| +|||+|+. |..|+.
T Consensus 38 lsG~elV~lIk~a~~DPV~VMfDD~G~~g~G~G-E~Al~~v~~h~--~IeVLG~iAVASnT~ 96 (180)
T PF14097_consen 38 LSGEELVELIKQAPHDPVLVMFDDKGFIGEGPG-EQALEYVANHP--DIEVLGAIAVASNTH 96 (180)
T ss_pred CCHHHHHHHHHhCCCCCEEEEEeCCCCCCCCcc-HHHHHHHHcCC--CceEEEEEEEEecCC
Confidence 55666666666666666667777332 344 36999999999 99999999 766643
No 46
>PRK10411 DNA-binding transcriptional activator FucR; Provisional
Probab=23.73 E-value=2.8e+02 Score=29.45 Aligned_cols=59 Identities=12% Similarity=0.271 Sum_probs=42.4
Q ss_pred cEEEEEecchhHHHHHH-hCCCcccccCeEEEecCCCCCCCCCCCccccCCCCcccCCCCCCHHHHHHHHhcCCceEEec
Q 003794 563 KITILTNGPLTNLAQII-GLQNSSSVIQDVYIVGGNKGQDNEKGNVFTVPSSKYAEFNMFLDPLAAKAVFESKLEIKLIP 641 (795)
Q Consensus 563 ~VtIla~GPLTNLA~al-~~P~i~~~I~~vviMGG~~~~~~~~GNv~~~~~~~~aEfN~~~DP~AA~iV~~s~~~itlip 641 (795)
++||+++.+ ++|..+ ..|++ ++++.||.+. .+.+.+..|.|.+.+=+-..+..+++
T Consensus 116 ~ltVvTNs~--~ia~~l~~~~~~-----~vil~GG~~~----------------~~~~~~~G~~a~~~l~~~~~d~afis 172 (240)
T PRK10411 116 NIQVFTNSH--PICQELGKRERI-----QLISSGGTLE----------------RKYGCYVNPSLISQLKSLEIDLFIFS 172 (240)
T ss_pred CeEEEeCCH--HHHHHHhcCCCC-----EEEEECCEEe----------------CCCCceECHHHHHHHHhcCCCEEEEe
Confidence 588888875 456666 66775 5899999993 33455578888888777777777776
Q ss_pred ccc
Q 003794 642 LHM 644 (795)
Q Consensus 642 ldv 644 (795)
-+-
T Consensus 173 ~~g 175 (240)
T PRK10411 173 CEG 175 (240)
T ss_pred cee
Confidence 553
No 47
>PRK10906 DNA-binding transcriptional repressor GlpR; Provisional
Probab=23.19 E-value=2.9e+02 Score=29.57 Aligned_cols=59 Identities=15% Similarity=0.290 Sum_probs=42.9
Q ss_pred CcEEEEEecchhHHHHHH-hCCCcccccCeEEEecCCCCCCCCCCCccccCCCCcccCCCCCCHHHHHHHHhcCCceEEe
Q 003794 562 SKITILTNGPLTNLAQII-GLQNSSSVIQDVYIVGGNKGQDNEKGNVFTVPSSKYAEFNMFLDPLAAKAVFESKLEIKLI 640 (795)
Q Consensus 562 ~~VtIla~GPLTNLA~al-~~P~i~~~I~~vviMGG~~~~~~~~GNv~~~~~~~~aEfN~~~DP~AA~iV~~s~~~itli 640 (795)
..+||+++.. ++|..+ ..|++ +|++.||.+. .+...+..|.|.+.+=+...++.++
T Consensus 114 ~~ltVvTNsl--~ia~~l~~~~~~-----~villGG~~~----------------~~~~~~~G~~a~~~l~~~~~d~afi 170 (252)
T PRK10906 114 SNLRIVTNNL--NVANTLMAKEDF-----RIILAGGELR----------------SRDGGIIGEATLDFISQFRLDFGIL 170 (252)
T ss_pred CCcEEEECcH--HHHHHHhhCCCC-----EEEEECCEEe----------------cCCCccCCHHHHHHHHhccCCEEEE
Confidence 3599998764 467777 67775 5899999993 2234457899988887777888777
Q ss_pred ccc
Q 003794 641 PLH 643 (795)
Q Consensus 641 pld 643 (795)
+-+
T Consensus 171 ~~~ 173 (252)
T PRK10906 171 GIS 173 (252)
T ss_pred cCC
Confidence 654
No 48
>KOG3953 consensus SOCS box protein SSB-1, contains SPRY domain [General function prediction only]
Probab=22.38 E-value=1.5e+02 Score=31.51 Aligned_cols=63 Identities=19% Similarity=0.240 Sum_probs=42.9
Q ss_pred EEEEEeccCCCcccCChhHHHHHHHHHHHccCCCcCCCceeee--------ccCcchhhhcccccCCCCCCCcEEEEcCC
Q 003794 344 RVLVATKAKPSQDLGSLLEKEFYLSFLNALNFPQQAGRFNIST--------QFPYYEEILRKPDFGKKLMGKPVVFDIDM 415 (795)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~kkVIiDtD~ 415 (795)
.|-|||+.-| =-.+++..-|+.-+|+=-+|+.+ ..+-|--....|-+.-. .+..||+|||.
T Consensus 87 vVGIaTk~Ap----------lha~gy~aLlGs~~qswGw~l~~~~l~H~g~~~~~yp~~~~~p~~~vp-~ri~viLDm~e 155 (242)
T KOG3953|consen 87 VVGIATKVAP----------LHAVGYTALLGSNSQSWGWDLGRNVLYHDGQVAGLYPALNRQPKYNVP-DRILVILDMIE 155 (242)
T ss_pred eEEEEcccCc----------hhhhHHHHHhCCCCCccceecccceeeecCccccccccccCCchhcCC-ceEEEEEeecc
Confidence 4899999988 56778899999999998888887 11112111222223222 35689999999
Q ss_pred Cc
Q 003794 416 SA 417 (795)
Q Consensus 416 g~ 417 (795)
|.
T Consensus 156 gt 157 (242)
T KOG3953|consen 156 GT 157 (242)
T ss_pred ce
Confidence 83
No 49
>PF00455 DeoRC: DeoR C terminal sensor domain; InterPro: IPR014036 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after Escherichia coli deoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerization domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].
Probab=20.01 E-value=3.3e+02 Score=26.90 Aligned_cols=73 Identities=22% Similarity=0.263 Sum_probs=51.1
Q ss_pred ccHHHHHHHHhcc-CCeEEEEecchHHHHHHHHhCCchhhccCcEEEecCCCCCCCCCCCCCCCccccCCCCCCCCCCCC
Q 003794 82 PTAQQVLINAISA-GPITVFVMGSHTNFAIFLMNNPHLKKNIEHIYVMGGAIRSDCFNSTNSSQSEQCDSIGNLYPDDSN 160 (795)
Q Consensus 82 ~~Av~~li~~i~~-g~itlvaiGPLTNlA~al~~~P~l~~~ik~IviMGG~~~~~~~~~~~~~~~~~~~~~GN~~~~~~t 160 (795)
.+-...|++.+.. .++|||+-. .++|..|...|+ + +|+++||.+..
T Consensus 28 GtT~~~la~~L~~~~~ltVvTns--l~ia~~l~~~~~----~-~vi~~GG~~~~-------------------------- 74 (161)
T PF00455_consen 28 GTTTLELAKYLPDKKNLTVVTNS--LPIANELSENPN----I-EVILLGGEVNP-------------------------- 74 (161)
T ss_pred chHHHHHHHHhhcCCceEEEECC--HHHHHHHHhcCc----e-EEEEeCCEEEc--------------------------
Confidence 3445667777764 489998765 357788888874 3 89999999985
Q ss_pred CCCccCCCCCHHHHHHHHhcCCCEEEecCC
Q 003794 161 PYAEFNIFSDPFAAYTVLHSGIPVTIIPLD 190 (795)
Q Consensus 161 p~AEfN~~~DPeAA~iVl~sg~pitlVplD 190 (795)
+...+..|.|.+.+-+-...+.+++.+
T Consensus 75 ---~~~~~~G~~a~~~l~~~~~d~afi~~~ 101 (161)
T PF00455_consen 75 ---KSLSFVGPIALEALRQFRFDKAFIGAD 101 (161)
T ss_pred ---CCCcEECchHHHHHHhhccceEEeccc
Confidence 233446777777776666677777665
No 50
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=20.00 E-value=82 Score=34.17 Aligned_cols=104 Identities=14% Similarity=0.144 Sum_probs=65.1
Q ss_pred cCchhHHHHHHHHHHhcCCCCcEEEEEecchhHHHHHH-h-----CCCcccccCeEEEecCCCCCCCCCCCccccCCCCc
Q 003794 542 LRQPLAVDVWKSIVESIEPGSKITILTNGPLTNLAQII-G-----LQNSSSVIQDVYIVGGNKGQDNEKGNVFTVPSSKY 615 (795)
Q Consensus 542 ~~~~~A~~~~~~i~~~~~~~~~VtIla~GPLTNLA~al-~-----~P~i~~~I~~vviMGG~~~~~~~~GNv~~~~~~~~ 615 (795)
+..+.|++-++++++. + -|..+.+||. +|+..+ . +|++...|++|.=-.=.. |-..
T Consensus 152 iEt~~a~~n~~~I~~~--~--gvd~i~~G~~-Dls~slg~~~~~~~pev~~ai~~v~~a~~~~------Gk~~------- 213 (267)
T PRK10128 152 VESKTALDNLDEILDV--E--GIDGVFIGPA-DLSASLGYPDNAGHPEVQRIIETSIRRIRAA------GKAA------- 213 (267)
T ss_pred ECCHHHHHhHHHHhCC--C--CCCEEEECHH-HHHHHcCCCCCCCCHHHHHHHHHHHHHHHHc------CCeE-------
Confidence 4678899988888863 3 5999999998 888887 3 466655555433221111 1100
Q ss_pred ccCCCCCCHHHHHHHHhcCCceEEeccccchhccccHHHHHHHHhcCCCc
Q 003794 616 AEFNMFLDPLAAKAVFESKLEIKLIPLHMQRRVASFFKILHKLRDRKKTP 665 (795)
Q Consensus 616 aEfN~~~DP~AA~iV~~s~~~itlipldvt~~~~~~~~~l~~l~~~~~tp 665 (795)
. =+..+|+.++..++.|.+...++-|+..-..-....++.++...+.|
T Consensus 214 G--~~~~~~~~a~~~~~~G~~~v~~g~D~~~l~~~~~~~~~~~~~~~~~~ 261 (267)
T PRK10128 214 G--FLAVDPDMAQKCLAWGANFVAVGVDTMLYTDALDQRLAMFKSGKNGP 261 (267)
T ss_pred E--EcCCCHHHHHHHHHcCCcEEEEChHHHHHHHHHHHHHHHHhccccCc
Confidence 0 02257888888899999998888887654333344555554433334
Done!