Query 003795
Match_columns 795
No_of_seqs 684 out of 5357
Neff 6.6
Searched_HMMs 46136
Date Thu Mar 28 12:10:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003795.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003795hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0734 AAA+-type ATPase conta 100.0 1.7E-78 3.7E-83 660.5 24.8 375 409-791 295-671 (752)
2 KOG0731 AAA+-type ATPase conta 100.0 9.5E-71 2.1E-75 635.0 29.3 373 410-790 303-679 (774)
3 COG0465 HflB ATP-dependent Zn 100.0 1.8E-69 3.8E-74 616.2 29.3 373 412-790 144-518 (596)
4 CHL00176 ftsH cell division pr 100.0 6.3E-63 1.4E-67 577.5 33.2 371 412-788 177-548 (638)
5 PRK10733 hflB ATP-dependent me 100.0 1.4E-60 3E-65 563.1 35.5 372 413-789 147-520 (644)
6 TIGR01241 FtsH_fam ATP-depende 100.0 3.2E-59 6.9E-64 538.6 34.8 373 410-789 47-421 (495)
7 CHL00206 ycf2 Ycf2; Provisiona 100.0 2.9E-48 6.3E-53 472.9 24.9 309 442-780 1621-1984(2281)
8 COG1222 RPT1 ATP-dependent 26S 100.0 2.9E-48 6.3E-53 411.0 21.4 250 410-659 143-393 (406)
9 KOG0730 AAA+-type ATPase [Post 100.0 1E-41 2.2E-46 383.8 22.9 249 411-662 427-678 (693)
10 KOG0733 Nuclear AAA ATPase (VC 100.0 3.3E-40 7.2E-45 366.1 19.5 246 412-660 505-771 (802)
11 KOG0728 26S proteasome regulat 100.0 1.6E-37 3.6E-42 313.9 23.8 249 410-658 139-388 (404)
12 KOG0733 Nuclear AAA ATPase (VC 100.0 1.5E-37 3.2E-42 345.1 17.9 226 413-641 185-414 (802)
13 KOG0727 26S proteasome regulat 100.0 4.8E-37 1E-41 310.8 19.4 247 411-657 148-395 (408)
14 KOG0729 26S proteasome regulat 100.0 6E-37 1.3E-41 312.0 14.9 250 411-660 170-420 (435)
15 KOG0652 26S proteasome regulat 100.0 2.3E-36 5E-41 307.0 15.6 245 412-656 165-410 (424)
16 KOG0726 26S proteasome regulat 100.0 2E-36 4.2E-41 311.7 12.3 249 410-658 177-426 (440)
17 KOG0736 Peroxisome assembly fa 100.0 1.3E-35 2.7E-40 336.9 19.9 244 412-657 666-931 (953)
18 PTZ00454 26S protease regulato 100.0 6.3E-35 1.4E-39 326.2 22.9 250 411-660 138-388 (398)
19 KOG0738 AAA+-type ATPase [Post 100.0 1.8E-34 3.8E-39 307.6 20.2 245 409-658 203-469 (491)
20 PRK03992 proteasome-activating 100.0 1.2E-33 2.6E-38 316.6 22.7 250 411-660 124-374 (389)
21 PTZ00361 26 proteosome regulat 100.0 1.4E-33 3E-38 317.4 22.9 248 411-658 176-424 (438)
22 COG0466 Lon ATP-dependent Lon 100.0 2.3E-33 4.9E-38 319.0 24.7 456 124-656 63-582 (782)
23 COG1223 Predicted ATPase (AAA+ 100.0 4.6E-34 1E-38 290.6 17.0 240 413-659 116-356 (368)
24 CHL00195 ycf46 Ycf46; Provisio 100.0 3.3E-32 7.1E-37 310.5 21.7 239 413-658 223-463 (489)
25 KOG0735 AAA+-type ATPase [Post 100.0 1.9E-32 4E-37 308.5 18.1 227 412-641 661-888 (952)
26 TIGR01243 CDC48 AAA family ATP 100.0 5.1E-32 1.1E-36 326.2 22.9 245 413-659 448-711 (733)
27 TIGR01242 26Sp45 26S proteasom 100.0 9.3E-32 2E-36 299.3 22.7 247 411-657 115-362 (364)
28 COG0464 SpoVK ATPases of the A 100.0 6.2E-32 1.3E-36 312.2 21.3 244 411-657 235-482 (494)
29 KOG0739 AAA+-type ATPase [Post 100.0 4.4E-31 9.6E-36 273.0 17.6 227 409-641 124-353 (439)
30 KOG0651 26S proteasome regulat 100.0 6.9E-32 1.5E-36 281.0 11.0 248 410-657 124-372 (388)
31 KOG0737 AAA+-type ATPase [Post 100.0 3E-30 6.5E-35 275.8 17.5 228 409-641 83-314 (386)
32 TIGR03689 pup_AAA proteasome A 100.0 2.9E-29 6.4E-34 286.1 23.0 265 410-676 174-497 (512)
33 COG0542 clpA ATP-binding subun 100.0 4E-29 8.7E-34 292.2 12.5 295 205-603 357-707 (786)
34 PF01434 Peptidase_M41: Peptid 100.0 2.5E-28 5.4E-33 252.1 12.9 140 647-791 1-142 (213)
35 PLN00020 ribulose bisphosphate 99.9 8.3E-27 1.8E-31 251.9 21.0 232 445-688 142-394 (413)
36 TIGR00763 lon ATP-dependent pr 99.9 3E-26 6.5E-31 277.2 28.1 460 127-656 56-584 (775)
37 PRK10865 protein disaggregatio 99.9 1.2E-26 2.6E-31 282.2 23.0 353 208-603 368-781 (857)
38 KOG0730 AAA+-type ATPase [Post 99.9 1.1E-26 2.4E-31 262.7 20.1 232 414-656 181-414 (693)
39 KOG0741 AAA+-type ATPase [Post 99.9 2.5E-27 5.3E-32 260.2 12.7 243 413-656 214-488 (744)
40 TIGR01243 CDC48 AAA family ATP 99.9 3.7E-26 7.9E-31 275.5 21.6 243 413-658 173-435 (733)
41 PRK10787 DNA-binding ATP-depen 99.9 4E-25 8.6E-30 265.5 27.5 457 127-656 66-580 (784)
42 TIGR03346 chaperone_ClpB ATP-d 99.9 2.6E-25 5.6E-30 271.3 25.3 396 207-636 362-823 (852)
43 KOG0732 AAA+-type ATPase conta 99.9 6.2E-26 1.3E-30 269.5 15.3 229 411-642 258-493 (1080)
44 TIGR03345 VI_ClpV1 type VI sec 99.9 6E-25 1.3E-29 266.6 23.3 384 204-635 373-827 (852)
45 KOG0740 AAA+-type ATPase [Post 99.9 5.9E-25 1.3E-29 242.9 14.1 241 410-657 145-403 (428)
46 KOG2004 Mitochondrial ATP-depe 99.9 2.6E-20 5.6E-25 211.5 28.3 326 224-602 244-597 (906)
47 CHL00095 clpC Clp protease ATP 99.9 3.8E-21 8.3E-26 234.2 21.1 304 205-603 365-734 (821)
48 KOG0742 AAA+-type ATPase [Post 99.9 2.5E-18 5.5E-23 184.8 35.4 197 452-655 385-609 (630)
49 PF00004 AAA: ATPase family as 99.8 1E-18 2.2E-23 164.7 9.0 130 454-587 1-132 (132)
50 KOG0743 AAA+-type ATPase [Post 99.8 2E-18 4.3E-23 190.0 12.4 212 429-656 213-432 (457)
51 KOG1051 Chaperone HSP104 and r 99.8 4.1E-19 8.9E-24 211.0 6.5 310 208-566 377-711 (898)
52 TIGR02881 spore_V_K stage V sp 99.8 1.8E-17 3.8E-22 176.6 18.1 210 417-639 5-239 (261)
53 CHL00181 cbbX CbbX; Provisiona 99.7 1.4E-17 3.1E-22 179.5 16.1 225 416-652 21-272 (287)
54 KOG0744 AAA+-type ATPase [Post 99.7 1.2E-17 2.5E-22 175.9 13.8 201 452-656 178-412 (423)
55 TIGR02880 cbbX_cfxQ probable R 99.7 7.2E-17 1.6E-21 174.0 17.1 209 419-639 23-254 (284)
56 PRK11034 clpA ATP-dependent Cl 99.7 7.6E-18 1.6E-22 201.6 8.4 188 390-602 423-667 (758)
57 TIGR02639 ClpA ATP-dependent C 99.7 2E-17 4.2E-22 199.7 11.5 230 389-636 418-709 (731)
58 COG0488 Uup ATPase components 99.7 2.4E-16 5.2E-21 181.9 14.6 240 308-568 215-472 (530)
59 KOG0735 AAA+-type ATPase [Post 99.7 1.1E-15 2.4E-20 174.0 18.6 235 452-689 432-683 (952)
60 KOG0736 Peroxisome assembly fa 99.7 1.2E-15 2.6E-20 175.1 16.3 219 432-658 412-653 (953)
61 TIGR00635 ruvB Holliday juncti 99.6 4.4E-14 9.5E-19 153.5 19.1 210 416-657 2-228 (305)
62 COG2256 MGS1 ATPase related to 99.6 2.9E-14 6.2E-19 155.1 17.2 212 452-696 49-283 (436)
63 COG0464 SpoVK ATPases of the A 99.6 4.3E-14 9.4E-19 163.9 19.7 215 439-658 6-226 (494)
64 PRK00080 ruvB Holliday junctio 99.6 4.8E-14 1E-18 155.2 19.0 213 413-657 20-249 (328)
65 PF05496 RuvB_N: Holliday junc 99.5 5.3E-14 1.1E-18 144.3 13.9 190 413-634 19-225 (233)
66 TIGR02639 ClpA ATP-dependent C 99.5 1.5E-13 3.2E-18 166.2 16.0 221 414-658 178-429 (731)
67 PRK14956 DNA polymerase III su 99.5 3.7E-13 8E-18 152.7 17.5 206 410-656 10-244 (484)
68 COG2255 RuvB Holliday junction 99.5 6.2E-13 1.3E-17 138.9 17.0 212 413-656 21-249 (332)
69 PRK14961 DNA polymerase III su 99.5 8.5E-13 1.8E-17 147.3 18.2 205 411-656 9-242 (363)
70 PRK12323 DNA polymerase III su 99.5 2.9E-13 6.3E-18 157.0 14.4 204 411-655 9-246 (700)
71 PRK07003 DNA polymerase III su 99.5 6.8E-13 1.5E-17 155.6 16.5 211 411-656 9-242 (830)
72 TIGR00362 DnaA chromosomal rep 99.5 7.7E-13 1.7E-17 149.8 16.5 210 452-689 137-358 (405)
73 PRK14962 DNA polymerase III su 99.5 1.3E-12 2.7E-17 150.0 18.4 205 411-656 7-240 (472)
74 PRK00149 dnaA chromosomal repl 99.5 6.2E-13 1.3E-17 152.5 15.9 270 452-761 149-434 (450)
75 PRK11034 clpA ATP-dependent Cl 99.5 5.3E-13 1.1E-17 160.3 15.2 218 417-658 185-433 (758)
76 TIGR02902 spore_lonB ATP-depen 99.5 8.7E-13 1.9E-17 153.8 16.5 216 410-656 57-330 (531)
77 PRK14960 DNA polymerase III su 99.4 1.1E-12 2.4E-17 152.5 16.4 205 411-656 8-241 (702)
78 KOG2028 ATPase related to the 99.4 2.2E-12 4.8E-17 138.0 17.0 235 408-681 128-389 (554)
79 PRK06645 DNA polymerase III su 99.4 2E-12 4.3E-17 149.1 17.6 215 410-656 13-254 (507)
80 PRK14958 DNA polymerase III su 99.4 1.3E-12 2.8E-17 151.3 15.1 205 411-656 9-242 (509)
81 PRK07994 DNA polymerase III su 99.4 2.6E-12 5.5E-17 151.2 17.3 204 412-656 10-242 (647)
82 PRK13342 recombination factor 99.4 6.9E-12 1.5E-16 142.4 20.3 199 413-657 7-218 (413)
83 PRK14964 DNA polymerase III su 99.4 4.1E-12 8.9E-17 145.5 17.2 204 411-655 6-238 (491)
84 PRK14951 DNA polymerase III su 99.4 5.1E-12 1.1E-16 148.4 17.2 205 411-656 9-247 (618)
85 PRK04195 replication factor C 99.4 5E-12 1.1E-16 146.2 16.9 210 409-655 5-222 (482)
86 TIGR02928 orc1/cdc6 family rep 99.4 1.5E-11 3.2E-16 136.9 19.9 218 419-658 16-274 (365)
87 PRK14949 DNA polymerase III su 99.4 6.4E-12 1.4E-16 150.1 17.3 210 411-655 9-241 (944)
88 PRK14088 dnaA chromosomal repl 99.4 4.4E-12 9.6E-17 144.8 15.5 266 453-756 132-413 (440)
89 PRK12422 chromosomal replicati 99.4 7.3E-12 1.6E-16 142.9 16.4 268 452-757 142-424 (445)
90 PRK08691 DNA polymerase III su 99.4 5.5E-12 1.2E-16 148.0 15.6 211 411-656 9-242 (709)
91 PRK05563 DNA polymerase III su 99.4 9.3E-12 2E-16 145.9 17.3 204 412-656 10-242 (559)
92 PRK14086 dnaA chromosomal repl 99.4 7.5E-12 1.6E-16 145.6 16.3 186 454-656 317-513 (617)
93 PRK06893 DNA replication initi 99.4 1.1E-11 2.4E-16 129.8 15.7 179 453-655 41-227 (229)
94 PRK05342 clpX ATP-dependent pr 99.4 1.8E-11 3.8E-16 138.3 17.8 218 420-639 73-379 (412)
95 PRK14969 DNA polymerase III su 99.3 1.2E-11 2.7E-16 143.9 16.4 210 412-656 10-242 (527)
96 TIGR02903 spore_lon_C ATP-depe 99.3 1.2E-10 2.6E-15 138.0 24.9 216 413-659 149-431 (615)
97 TIGR03345 VI_ClpV1 type VI sec 99.3 1.2E-11 2.5E-16 151.3 16.6 218 413-655 182-428 (852)
98 KOG0927 Predicted transporter 99.3 7.5E-12 1.6E-16 140.3 13.5 241 308-568 284-542 (614)
99 PLN03025 replication factor C 99.3 2.4E-11 5.1E-16 133.4 17.3 203 409-654 4-219 (319)
100 TIGR02397 dnaX_nterm DNA polym 99.3 2E-11 4.3E-16 135.3 16.8 206 410-656 6-240 (355)
101 PRK14963 DNA polymerase III su 99.3 2.1E-11 4.6E-16 141.0 17.4 204 411-656 7-238 (504)
102 PRK07940 DNA polymerase III su 99.3 1.1E-11 2.3E-16 139.3 14.5 185 416-630 3-214 (394)
103 PRK14087 dnaA chromosomal repl 99.3 1.7E-11 3.6E-16 140.3 15.9 271 452-761 142-433 (450)
104 PRK14957 DNA polymerase III su 99.3 1.9E-11 4.1E-16 141.9 16.2 204 411-655 9-241 (546)
105 PRK07764 DNA polymerase III su 99.3 2.1E-11 4.5E-16 147.7 16.8 212 411-656 8-244 (824)
106 PRK00411 cdc6 cell division co 99.3 3.2E-11 6.8E-16 135.8 17.2 195 451-658 55-282 (394)
107 PRK14953 DNA polymerase III su 99.3 3.5E-11 7.6E-16 138.7 17.0 212 410-656 8-242 (486)
108 TIGR03420 DnaA_homol_Hda DnaA 99.3 2.1E-11 4.5E-16 126.4 13.8 179 451-655 38-225 (226)
109 PRK12402 replication factor C 99.3 5.4E-11 1.2E-15 130.7 17.7 211 409-656 6-247 (337)
110 PRK14959 DNA polymerase III su 99.3 3.3E-11 7.2E-16 140.8 16.7 206 410-656 8-242 (624)
111 PRK07133 DNA polymerase III su 99.3 3.7E-11 8.1E-16 142.3 17.3 212 410-656 10-241 (725)
112 COG2812 DnaX DNA polymerase II 99.3 2.1E-11 4.5E-16 139.5 14.6 210 412-656 10-242 (515)
113 PRK14952 DNA polymerase III su 99.3 2.2E-11 4.8E-16 142.5 14.8 206 411-656 6-242 (584)
114 PRK14965 DNA polymerase III su 99.3 4.1E-11 8.8E-16 141.1 16.9 202 412-654 10-240 (576)
115 TIGR00382 clpX endopeptidase C 99.3 1.9E-11 4.2E-16 137.4 13.5 219 420-640 79-386 (413)
116 PHA02544 44 clamp loader, smal 99.3 2.4E-11 5.2E-16 132.8 13.1 207 408-653 11-226 (316)
117 PRK05896 DNA polymerase III su 99.3 3.6E-11 7.9E-16 139.9 15.0 205 410-655 8-241 (605)
118 PRK09111 DNA polymerase III su 99.3 8.3E-11 1.8E-15 138.3 17.8 212 410-656 16-255 (598)
119 PRK14970 DNA polymerase III su 99.3 7.4E-11 1.6E-15 131.9 16.5 211 411-656 10-231 (367)
120 PRK10865 protein disaggregatio 99.3 3.1E-11 6.6E-16 148.0 13.6 165 414-603 174-356 (857)
121 PRK08903 DnaA regulatory inact 99.2 1.7E-10 3.6E-15 120.3 16.8 174 451-656 42-224 (227)
122 PRK13341 recombination factor 99.2 9.7E-11 2.1E-15 140.4 16.9 206 413-656 23-245 (725)
123 KOG0989 Replication factor C, 99.2 1.6E-10 3.4E-15 122.3 16.1 186 408-627 26-228 (346)
124 TIGR03346 chaperone_ClpB ATP-d 99.2 7.4E-11 1.6E-15 145.0 15.9 201 414-639 169-397 (852)
125 COG0593 DnaA ATPase involved i 99.2 1.2E-10 2.7E-15 129.8 15.7 185 454-656 116-311 (408)
126 PRK08084 DNA replication initi 99.2 1.1E-10 2.4E-15 122.7 14.6 177 453-655 47-233 (235)
127 CHL00095 clpC Clp protease ATP 99.2 6.5E-11 1.4E-15 145.1 14.3 199 415-638 176-401 (821)
128 PTZ00112 origin recognition co 99.2 2.1E-10 4.6E-15 135.3 17.2 186 454-658 784-1006(1164)
129 PRK08451 DNA polymerase III su 99.2 1.2E-10 2.7E-15 134.6 15.0 203 411-654 7-238 (535)
130 PRK14955 DNA polymerase III su 99.2 1.7E-10 3.6E-15 130.4 15.8 214 411-655 9-254 (397)
131 PRK06647 DNA polymerase III su 99.2 1.5E-10 3.3E-15 135.4 15.8 209 412-656 10-242 (563)
132 PRK05642 DNA replication initi 99.2 2.1E-10 4.6E-15 120.5 15.2 178 452-655 46-232 (234)
133 TIGR02640 gas_vesic_GvpN gas v 99.2 1.1E-10 2.4E-15 124.7 13.2 179 453-656 23-255 (262)
134 PRK08727 hypothetical protein; 99.2 1.3E-10 2.8E-15 122.0 13.4 179 453-657 43-230 (233)
135 PRK13407 bchI magnesium chelat 99.2 1.3E-10 2.9E-15 127.6 13.6 214 414-656 4-304 (334)
136 KOG0066 eIF2-interacting prote 99.2 6.9E-11 1.5E-15 128.9 10.7 240 308-567 474-736 (807)
137 PRK06305 DNA polymerase III su 99.2 4.2E-10 9.1E-15 129.0 17.6 204 412-656 11-244 (451)
138 PRK00440 rfc replication facto 99.2 3.9E-10 8.5E-15 122.8 16.3 206 408-656 7-224 (319)
139 TIGR02030 BchI-ChlI magnesium 99.2 4.4E-10 9.6E-15 123.8 16.1 132 511-658 132-309 (337)
140 PRK14950 DNA polymerase III su 99.2 5.6E-10 1.2E-14 132.0 18.1 211 411-656 9-243 (585)
141 PRK14954 DNA polymerase III su 99.2 4.7E-10 1E-14 132.3 17.1 213 412-655 10-254 (620)
142 TIGR00390 hslU ATP-dependent p 99.2 7.6E-11 1.6E-15 131.3 9.0 84 511-598 248-343 (441)
143 PRK14948 DNA polymerase III su 99.1 4.7E-10 1E-14 132.8 15.7 209 410-654 8-241 (620)
144 TIGR01650 PD_CobS cobaltochela 99.1 1.4E-10 3.1E-15 126.1 9.7 138 451-602 64-234 (327)
145 PRK05201 hslU ATP-dependent pr 99.1 1.8E-10 3.9E-15 128.4 10.6 175 420-598 17-345 (443)
146 PF00308 Bac_DnaA: Bacterial d 99.1 1.5E-10 3.4E-15 120.4 9.1 168 454-638 37-216 (219)
147 PRK10636 putative ABC transpor 99.1 3.5E-10 7.6E-15 135.2 12.1 235 309-568 212-463 (638)
148 PRK06620 hypothetical protein; 99.1 6.4E-10 1.4E-14 115.4 12.5 164 452-655 45-213 (214)
149 CHL00081 chlI Mg-protoporyphyr 99.1 1.5E-09 3.2E-14 119.9 15.3 218 413-658 12-322 (350)
150 COG1474 CDC6 Cdc6-related prot 99.1 1.8E-09 3.9E-14 120.3 15.9 192 449-656 40-263 (366)
151 PRK14971 DNA polymerase III su 99.1 1.8E-09 3.8E-14 127.9 16.5 203 412-655 11-243 (614)
152 cd00009 AAA The AAA+ (ATPases 99.1 4.6E-10 9.9E-15 105.9 9.0 119 452-586 20-150 (151)
153 PF05673 DUF815: Protein of un 99.0 4.6E-09 9.9E-14 109.5 15.4 191 412-632 21-243 (249)
154 PRK11147 ABC transporter ATPas 99.0 1E-09 2.2E-14 131.2 11.6 235 310-568 220-473 (635)
155 PF07724 AAA_2: AAA domain (Cd 99.0 3.3E-10 7.2E-15 113.4 5.9 110 453-567 5-131 (171)
156 PRK09087 hypothetical protein; 99.0 1.6E-09 3.5E-14 113.2 10.8 168 454-656 47-220 (226)
157 TIGR00678 holB DNA polymerase 99.0 3.1E-09 6.7E-14 107.6 12.1 145 449-622 12-184 (188)
158 COG1224 TIP49 DNA helicase TIP 99.0 8.3E-09 1.8E-13 111.1 15.7 126 511-656 292-430 (450)
159 TIGR03015 pepcterm_ATPase puta 99.0 1.1E-08 2.3E-13 109.0 15.8 187 454-656 46-264 (269)
160 COG0714 MoxR-like ATPases [Gen 99.0 3.1E-09 6.7E-14 117.3 11.6 128 452-599 44-201 (329)
161 TIGR02031 BchD-ChlD magnesium 99.0 6.3E-09 1.4E-13 123.0 14.8 186 452-656 17-256 (589)
162 smart00350 MCM minichromosome 98.9 1E-08 2.2E-13 119.6 15.7 188 453-658 238-504 (509)
163 TIGR02442 Cob-chelat-sub cobal 98.9 7.4E-09 1.6E-13 123.6 14.9 187 452-656 26-302 (633)
164 PRK07471 DNA polymerase III su 98.9 1.3E-08 2.9E-13 113.5 14.6 181 413-626 14-235 (365)
165 smart00382 AAA ATPases associa 98.9 2.9E-09 6.3E-14 99.2 7.8 122 452-588 3-147 (148)
166 PRK05707 DNA polymerase III su 98.9 7.7E-09 1.7E-13 113.9 12.2 153 448-625 19-199 (328)
167 PF07728 AAA_5: AAA domain (dy 98.9 8.6E-10 1.9E-14 105.8 3.7 109 453-579 1-139 (139)
168 PRK05564 DNA polymerase III su 98.9 1.6E-08 3.5E-13 110.8 13.8 172 416-624 2-185 (313)
169 PRK09112 DNA polymerase III su 98.9 1.8E-08 3.9E-13 112.0 14.1 183 413-626 18-237 (351)
170 PHA02244 ATPase-like protein 98.9 8.4E-08 1.8E-12 105.9 19.0 123 453-597 121-269 (383)
171 PRK13531 regulatory ATPase Rav 98.8 2.4E-08 5.3E-13 113.6 13.1 186 452-653 40-279 (498)
172 PRK04132 replication factor C 98.8 2.6E-08 5.7E-13 120.5 14.1 178 447-655 559-751 (846)
173 COG0470 HolB ATPase involved i 98.8 1.3E-08 2.8E-13 111.0 10.5 129 449-598 22-178 (325)
174 TIGR00368 Mg chelatase-related 98.8 2.4E-08 5.1E-13 115.6 13.1 185 453-656 213-497 (499)
175 COG1219 ClpX ATP-dependent pro 98.8 1.7E-08 3.7E-13 107.3 10.5 100 448-550 93-202 (408)
176 KOG1969 DNA replication checkp 98.8 5.2E-08 1.1E-12 112.9 12.5 166 454-641 329-518 (877)
177 KOG0991 Replication factor C, 98.7 1.5E-08 3.2E-13 103.6 7.0 251 408-704 17-280 (333)
178 PRK09862 putative ATP-dependen 98.7 7.1E-08 1.5E-12 111.3 13.4 184 454-656 213-490 (506)
179 PRK11331 5-methylcytosine-spec 98.7 2.5E-08 5.4E-13 112.6 9.2 121 451-587 194-357 (459)
180 COG0542 clpA ATP-binding subun 98.7 1.3E-07 2.8E-12 112.6 14.8 176 453-640 193-395 (786)
181 PLN03073 ABC transporter F fam 98.7 6E-08 1.3E-12 117.2 11.9 232 310-567 408-659 (718)
182 PRK06871 DNA polymerase III su 98.7 9.7E-08 2.1E-12 104.8 12.4 149 449-624 22-198 (325)
183 KOG0062 ATPase component of AB 98.7 5.4E-08 1.2E-12 109.3 10.2 231 311-568 263-515 (582)
184 PRK07993 DNA polymerase III su 98.7 9.7E-08 2.1E-12 105.5 11.9 154 448-627 21-202 (334)
185 PRK07399 DNA polymerase III su 98.7 8.9E-08 1.9E-12 105.0 11.4 179 416-627 2-219 (314)
186 COG1220 HslU ATP-dependent pro 98.7 8.6E-08 1.9E-12 102.7 10.8 84 511-598 251-346 (444)
187 PRK06964 DNA polymerase III su 98.7 4.6E-08 1E-12 108.0 8.4 133 449-600 19-203 (342)
188 KOG0741 AAA+-type ATPase [Post 98.7 1.1E-07 2.4E-12 106.7 11.2 140 453-598 540-683 (744)
189 PRK15064 ABC transporter ATP-b 98.6 1.3E-07 2.9E-12 110.9 12.1 135 426-567 318-470 (530)
190 TIGR00764 lon_rel lon-related 98.6 4.2E-07 9.2E-12 107.9 16.1 101 556-658 268-391 (608)
191 COG1239 ChlI Mg-chelatase subu 98.6 2.9E-07 6.3E-12 102.1 13.2 187 452-656 39-320 (423)
192 PRK08058 DNA polymerase III su 98.6 1.1E-07 2.5E-12 104.9 10.1 127 449-599 26-180 (329)
193 PRK08769 DNA polymerase III su 98.6 2.2E-07 4.7E-12 101.9 11.6 156 448-627 23-206 (319)
194 COG2607 Predicted ATPase (AAA+ 98.6 1E-06 2.2E-11 90.9 15.3 168 411-608 53-246 (287)
195 KOG1942 DNA helicase, TBP-inte 98.6 3.5E-07 7.6E-12 96.3 12.2 129 509-657 295-437 (456)
196 PF07726 AAA_3: ATPase family 98.6 9.4E-09 2E-13 97.2 0.1 103 454-579 2-129 (131)
197 PF05621 TniB: Bacterial TniB 98.6 1.1E-06 2.3E-11 94.6 15.6 213 421-654 37-285 (302)
198 KOG0745 Putative ATP-dependent 98.6 1.3E-07 2.8E-12 104.2 8.5 95 453-550 228-331 (564)
199 TIGR00602 rad24 checkpoint pro 98.6 4.2E-07 9.1E-12 107.6 13.3 203 408-636 74-326 (637)
200 PTZ00111 DNA replication licen 98.6 1E-06 2.2E-11 106.6 16.2 126 453-597 494-653 (915)
201 PRK06090 DNA polymerase III su 98.5 2.7E-07 5.9E-12 101.0 9.6 130 448-599 22-178 (319)
202 PF01078 Mg_chelatase: Magnesi 98.5 7.7E-08 1.7E-12 98.4 4.4 142 417-591 2-205 (206)
203 PRK15424 propionate catabolism 98.5 7.5E-07 1.6E-11 104.0 12.7 207 415-651 216-478 (538)
204 TIGR02974 phageshock_pspF psp 98.5 8.7E-07 1.9E-11 97.9 12.5 167 452-638 23-233 (329)
205 COG1221 PspF Transcriptional r 98.5 4.6E-07 9.9E-12 101.2 10.1 197 413-639 73-310 (403)
206 COG3829 RocR Transcriptional r 98.5 8.2E-07 1.8E-11 101.1 11.9 212 412-655 239-495 (560)
207 TIGR02329 propionate_PrpR prop 98.5 7E-07 1.5E-11 104.2 11.5 210 415-653 209-465 (526)
208 PF13177 DNA_pol3_delta2: DNA 98.5 2.9E-07 6.3E-12 91.4 7.0 117 449-587 17-160 (162)
209 TIGR01817 nifA Nif-specific re 98.5 6.7E-07 1.5E-11 105.1 11.3 207 414-652 192-439 (534)
210 COG1116 TauB ABC-type nitrate/ 98.5 1E-07 2.2E-12 99.4 3.8 52 433-484 9-62 (248)
211 PRK08699 DNA polymerase III su 98.4 3.2E-07 6.8E-12 101.1 7.6 131 449-599 19-183 (325)
212 PRK13406 bchD magnesium chelat 98.4 2E-06 4.3E-11 101.4 14.1 186 452-656 26-248 (584)
213 PRK05022 anaerobic nitric oxid 98.4 1.9E-06 4.2E-11 100.7 13.8 193 417-639 186-421 (509)
214 PRK11819 putative ABC transpor 98.4 7.3E-07 1.6E-11 105.3 10.1 135 427-567 324-477 (556)
215 smart00763 AAA_PrkA PrkA AAA d 98.4 1.9E-06 4.2E-11 95.1 12.7 70 417-493 49-131 (361)
216 PRK11608 pspF phage shock prot 98.4 1.4E-06 3.1E-11 96.1 11.7 191 417-637 5-239 (326)
217 PF06068 TIP49: TIP49 C-termin 98.4 7.7E-07 1.7E-11 97.6 9.3 77 511-607 279-367 (398)
218 TIGR03719 ABC_ABC_ChvD ATP-bin 98.4 8.4E-07 1.8E-11 104.7 9.9 58 427-484 322-381 (552)
219 PRK11388 DNA-binding transcrip 98.3 5.2E-06 1.1E-10 99.8 14.1 207 415-654 322-567 (638)
220 PRK15429 formate hydrogenlyase 98.3 4.7E-06 1E-10 100.9 13.6 195 415-637 373-608 (686)
221 PRK10820 DNA-binding transcrip 98.3 5.5E-06 1.2E-10 97.1 13.4 206 413-651 199-447 (520)
222 KOG1514 Origin recognition com 98.3 7.1E-06 1.5E-10 95.5 13.6 189 454-656 425-653 (767)
223 COG2204 AtoC Response regulato 98.3 3.4E-06 7.3E-11 96.0 10.8 204 416-652 139-385 (464)
224 COG0606 Predicted ATPase with 98.3 1.8E-06 3.8E-11 97.2 8.4 211 415-656 176-483 (490)
225 COG3604 FhlA Transcriptional r 98.3 2.7E-05 5.9E-10 87.9 17.1 194 414-638 219-456 (550)
226 COG1120 FepC ABC-type cobalami 98.2 1.3E-06 2.8E-11 92.5 5.5 52 432-483 7-60 (258)
227 KOG2035 Replication factor C, 98.2 4E-05 8.6E-10 80.8 16.2 156 453-627 36-226 (351)
228 PRK08116 hypothetical protein; 98.2 9.9E-07 2.2E-11 94.7 4.3 122 452-590 115-251 (268)
229 COG1121 ZnuC ABC-type Mn/Zn tr 98.2 7.1E-07 1.5E-11 94.1 3.0 54 431-484 8-63 (254)
230 COG1126 GlnQ ABC-type polar am 98.2 8.4E-07 1.8E-11 90.6 3.3 55 430-484 5-61 (240)
231 COG3842 PotA ABC-type spermidi 98.2 4.3E-07 9.3E-12 100.1 1.4 57 430-486 8-66 (352)
232 PF00158 Sigma54_activat: Sigm 98.2 4.2E-06 9.2E-11 83.7 7.3 97 452-565 23-143 (168)
233 COG3839 MalK ABC-type sugar tr 98.2 6.2E-07 1.3E-11 98.4 1.4 56 431-486 7-64 (338)
234 COG0488 Uup ATPase components 98.2 2.1E-06 4.6E-11 100.0 5.8 56 431-486 7-64 (530)
235 KOG0480 DNA replication licens 98.1 3.1E-05 6.7E-10 89.2 14.8 226 415-660 342-645 (764)
236 PRK05917 DNA polymerase III su 98.1 7E-06 1.5E-10 88.6 9.2 119 448-588 16-154 (290)
237 PF13173 AAA_14: AAA domain 98.1 6E-06 1.3E-10 78.5 7.7 67 454-522 5-73 (128)
238 KOG2227 Pre-initiation complex 98.1 5.5E-05 1.2E-09 84.9 15.8 182 447-641 171-382 (529)
239 cd03222 ABC_RNaseL_inhibitor T 98.1 1.6E-06 3.5E-11 87.4 3.6 74 448-521 20-100 (177)
240 PRK09183 transposase/IS protei 98.1 6E-06 1.3E-10 88.3 8.1 69 453-522 104-176 (259)
241 KOG2680 DNA helicase TIP49, TB 98.1 3.3E-05 7.1E-10 82.0 13.2 89 566-657 339-428 (454)
242 PF00493 MCM: MCM2/3/5 family 98.1 2.6E-06 5.6E-11 94.3 5.3 189 453-658 59-326 (331)
243 KOG0990 Replication factor C, 98.1 1.2E-05 2.6E-10 86.3 9.6 158 453-633 64-232 (360)
244 PRK06526 transposase; Provisio 98.1 2E-06 4.2E-11 91.7 3.8 70 451-522 98-171 (254)
245 COG1241 MCM2 Predicted ATPase 98.1 1.7E-05 3.7E-10 94.1 11.6 220 417-657 285-591 (682)
246 COG1134 TagH ABC-type polysacc 98.1 5.9E-06 1.3E-10 86.0 6.7 48 439-486 39-88 (249)
247 PF13401 AAA_22: AAA domain; P 98.1 9E-06 1.9E-10 76.6 7.2 96 453-563 6-125 (131)
248 KOG0478 DNA replication licens 98.1 6.7E-05 1.4E-09 87.2 15.4 153 419-591 430-616 (804)
249 COG4559 ABC-type hemin transpo 98.1 4.7E-06 1E-10 84.9 5.4 54 432-485 6-61 (259)
250 COG1118 CysA ABC-type sulfate/ 98.1 3.6E-06 7.9E-11 89.9 4.6 88 431-519 6-98 (345)
251 PRK08181 transposase; Validate 98.0 3.6E-06 7.9E-11 90.3 4.6 69 452-522 107-179 (269)
252 cd03216 ABC_Carb_Monos_I This 98.0 6.8E-06 1.5E-10 81.5 6.3 116 439-568 12-144 (163)
253 cd03259 ABC_Carb_Solutes_like 98.0 1.8E-06 3.9E-11 89.0 2.1 49 436-484 9-59 (213)
254 PF03215 Rad17: Rad17 cell cyc 98.0 6.7E-05 1.5E-09 87.5 14.6 68 408-482 9-76 (519)
255 TIGR02915 PEP_resp_reg putativ 98.0 2.7E-05 5.8E-10 89.4 11.2 176 453-651 164-382 (445)
256 cd00267 ABC_ATPase ABC (ATP-bi 98.0 5.5E-06 1.2E-10 81.3 4.0 114 441-569 13-143 (157)
257 PRK12377 putative replication 98.0 5E-05 1.1E-09 80.7 11.2 69 452-522 102-175 (248)
258 cd03221 ABCF_EF-3 ABCF_EF-3 E 98.0 1.1E-05 2.5E-10 78.4 5.9 81 441-521 14-99 (144)
259 COG4133 CcmA ABC-type transpor 98.0 2E-05 4.4E-10 79.0 7.7 49 437-485 12-62 (209)
260 cd03226 ABC_cobalt_CbiO_domain 97.9 3.4E-06 7.3E-11 86.6 2.1 45 440-484 13-59 (205)
261 PRK10923 glnG nitrogen regulat 97.9 5E-05 1.1E-09 87.8 11.9 179 453-654 163-384 (469)
262 cd03301 ABC_MalK_N The N-termi 97.9 3.8E-06 8.3E-11 86.5 2.5 48 437-484 10-59 (213)
263 COG1127 Ttg2A ABC-type transpo 97.9 5.5E-06 1.2E-10 85.9 3.5 57 426-482 7-65 (263)
264 PRK07952 DNA replication prote 97.9 3.8E-05 8.2E-10 81.3 9.9 69 452-522 100-174 (244)
265 PRK11361 acetoacetate metaboli 97.9 4.3E-05 9.4E-10 87.8 11.3 178 453-653 168-388 (457)
266 cd03255 ABC_MJ0796_Lo1CDE_FtsE 97.9 3.4E-06 7.3E-11 87.3 1.9 45 440-484 17-63 (218)
267 PRK13765 ATP-dependent proteas 97.9 3.9E-05 8.5E-10 91.3 11.0 99 556-656 277-398 (637)
268 COG1131 CcmA ABC-type multidru 97.9 1.5E-05 3.3E-10 86.7 7.0 55 431-485 8-65 (293)
269 cd03228 ABCC_MRP_Like The MRP 97.9 1E-05 2.3E-10 80.7 5.1 43 441-483 16-60 (171)
270 COG4619 ABC-type uncharacteriz 97.9 3.2E-05 7E-10 76.2 8.2 55 429-483 5-61 (223)
271 TIGR01818 ntrC nitrogen regula 97.9 3.4E-05 7.5E-10 88.9 9.9 184 453-655 159-381 (463)
272 cd03225 ABC_cobalt_CbiO_domain 97.9 4.9E-06 1.1E-10 85.6 2.4 45 440-484 14-60 (211)
273 COG1122 CbiO ABC-type cobalt t 97.9 5.1E-06 1.1E-10 87.4 2.5 43 441-483 18-62 (235)
274 COG2884 FtsE Predicted ATPase 97.9 1.6E-05 3.5E-10 79.8 5.6 57 430-486 4-63 (223)
275 cd03261 ABC_Org_Solvent_Resist 97.9 3.9E-06 8.5E-11 88.0 1.4 48 437-484 10-59 (235)
276 PF01695 IstB_IS21: IstB-like 97.9 7E-06 1.5E-10 82.9 3.1 68 451-520 47-118 (178)
277 PRK13539 cytochrome c biogenes 97.9 1.4E-05 3.1E-10 82.2 5.3 47 437-483 12-60 (207)
278 cd03230 ABC_DR_subfamily_A Thi 97.9 2E-05 4.3E-10 78.9 6.1 42 441-482 14-57 (173)
279 cd03247 ABCC_cytochrome_bd The 97.9 1.2E-05 2.7E-10 80.6 4.7 43 441-483 16-60 (178)
280 COG0410 LivF ABC-type branched 97.9 1.7E-05 3.7E-10 82.0 5.6 125 430-560 6-160 (237)
281 PRK11432 fbpC ferric transport 97.9 3.8E-06 8.3E-11 93.6 1.0 50 436-485 15-66 (351)
282 cd03214 ABC_Iron-Siderophores_ 97.9 8.3E-06 1.8E-10 82.1 3.4 46 439-484 11-58 (180)
283 COG1119 ModF ABC-type molybden 97.9 1.3E-05 2.9E-10 83.4 4.8 52 426-477 30-83 (257)
284 cd03223 ABCD_peroxisomal_ALDP 97.9 2E-05 4.4E-10 78.4 6.0 43 441-483 15-59 (166)
285 cd03294 ABC_Pro_Gly_Bertaine T 97.9 1.7E-05 3.6E-10 85.2 5.6 54 430-483 27-82 (269)
286 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 97.8 4.4E-05 9.5E-10 79.7 8.3 57 428-484 23-81 (224)
287 PRK13537 nodulation ABC transp 97.8 5.9E-06 1.3E-10 90.4 1.8 54 431-484 11-66 (306)
288 PF01637 Arch_ATPase: Archaeal 97.8 1.5E-05 3.2E-10 82.0 4.6 159 453-623 22-228 (234)
289 cd03269 ABC_putative_ATPase Th 97.8 1.8E-05 3.8E-10 81.5 5.1 48 437-484 10-59 (210)
290 PRK15115 response regulator Gl 97.8 7.1E-05 1.5E-09 85.8 10.5 178 453-653 159-379 (444)
291 PRK11650 ugpC glycerol-3-phosp 97.8 5E-06 1.1E-10 92.9 1.0 46 440-485 17-64 (356)
292 TIGR01188 drrA daunorubicin re 97.8 1.6E-05 3.5E-10 86.8 4.9 47 438-484 4-52 (302)
293 COG1124 DppF ABC-type dipeptid 97.8 1.3E-05 2.8E-10 83.4 3.8 44 442-485 22-67 (252)
294 cd03218 ABC_YhbG The ABC trans 97.8 6.2E-06 1.3E-10 86.2 1.4 47 437-483 10-58 (232)
295 cd01120 RecA-like_NTPases RecA 97.8 0.00011 2.4E-09 71.0 10.0 72 454-525 2-100 (165)
296 TIGR01288 nodI ATP-binding ABC 97.8 6.7E-06 1.4E-10 89.8 1.5 52 433-484 10-63 (303)
297 PRK11247 ssuB aliphatic sulfon 97.8 4.5E-05 9.7E-10 81.5 7.7 49 436-484 21-71 (257)
298 TIGR00960 3a0501s02 Type II (G 97.8 2.3E-05 5.1E-10 81.0 5.4 44 441-484 17-62 (216)
299 COG1484 DnaC DNA replication p 97.8 2.1E-05 4.6E-10 83.8 5.1 69 451-521 105-178 (254)
300 PF05729 NACHT: NACHT domain 97.8 0.00011 2.5E-09 71.4 9.9 140 454-603 3-165 (166)
301 cd03246 ABCC_Protease_Secretio 97.8 3.9E-05 8.5E-10 76.7 6.7 42 442-483 17-60 (173)
302 TIGR02673 FtsE cell division A 97.8 1E-05 2.2E-10 83.5 2.6 45 440-484 15-61 (214)
303 cd03296 ABC_CysA_sulfate_impor 97.8 7.5E-06 1.6E-10 86.1 1.4 49 436-484 11-61 (239)
304 PRK06835 DNA replication prote 97.8 1.6E-05 3.5E-10 87.7 4.0 69 452-522 184-258 (329)
305 COG4555 NatA ABC-type Na+ tran 97.8 2.5E-05 5.4E-10 79.1 4.8 54 432-485 6-62 (245)
306 cd03267 ABC_NatA_like Similar 97.8 2.3E-05 5.1E-10 82.4 4.9 50 435-484 29-80 (236)
307 PRK08939 primosomal protein Dn 97.8 2.5E-05 5.4E-10 85.5 5.2 69 451-521 156-228 (306)
308 cd03268 ABC_BcrA_bacitracin_re 97.8 2.4E-05 5.1E-10 80.5 4.7 48 437-484 10-59 (208)
309 PRK05818 DNA polymerase III su 97.8 7.9E-05 1.7E-09 79.1 8.6 121 449-588 5-147 (261)
310 PRK10636 putative ABC transpor 97.8 2.7E-05 5.8E-10 93.6 5.8 52 433-484 7-60 (638)
311 PRK11000 maltose/maltodextrin 97.8 1.8E-05 3.9E-10 88.9 4.0 49 436-484 12-62 (369)
312 PRK07276 DNA polymerase III su 97.8 0.00018 3.9E-09 78.0 11.5 128 449-598 22-172 (290)
313 PRK13543 cytochrome c biogenes 97.8 1.7E-05 3.7E-10 82.1 3.5 55 431-485 15-71 (214)
314 COG2274 SunT ABC-type bacterio 97.7 5.3E-05 1.1E-09 91.3 8.0 134 428-568 472-642 (709)
315 PRK11147 ABC transporter ATPas 97.7 2.8E-05 6E-10 93.5 5.6 53 432-484 8-62 (635)
316 cd03265 ABC_DrrA DrrA is the A 97.7 3.2E-05 6.8E-10 80.3 5.3 48 437-484 10-59 (220)
317 PRK10365 transcriptional regul 97.7 6.3E-05 1.4E-09 86.0 8.0 179 453-654 164-385 (441)
318 cd03213 ABCG_EPDR ABCG transpo 97.7 1.7E-05 3.6E-10 81.0 2.9 44 441-484 23-70 (194)
319 cd03266 ABC_NatA_sodium_export 97.7 2.9E-05 6.2E-10 80.4 4.7 43 441-483 19-63 (218)
320 COG1125 OpuBA ABC-type proline 97.7 3.4E-05 7.3E-10 80.7 5.0 56 429-484 3-60 (309)
321 TIGR03265 PhnT2 putative 2-ami 97.7 2.5E-05 5.5E-10 87.2 4.5 49 436-484 13-63 (353)
322 PRK13638 cbiO cobalt transport 97.7 3.3E-05 7.1E-10 82.9 5.2 48 437-484 11-60 (271)
323 cd03215 ABC_Carb_Monos_II This 97.7 3.2E-05 6.9E-10 78.0 4.8 43 442-484 15-59 (182)
324 cd03229 ABC_Class3 This class 97.7 1.9E-05 4.1E-10 79.4 3.1 44 440-483 13-58 (178)
325 cd03238 ABC_UvrA The excision 97.7 5.9E-05 1.3E-09 76.1 6.5 33 441-473 9-43 (176)
326 PRK06921 hypothetical protein; 97.7 3E-05 6.4E-10 83.3 4.6 66 452-520 118-187 (266)
327 PRK09544 znuC high-affinity zi 97.7 3.8E-05 8.2E-10 81.7 5.4 49 436-484 13-63 (251)
328 PRK13536 nodulation factor exp 97.7 1.1E-05 2.4E-10 89.6 1.1 57 428-484 42-100 (340)
329 PRK11607 potG putrescine trans 97.7 1E-05 2.3E-10 91.0 0.8 53 432-484 24-78 (377)
330 KOG1970 Checkpoint RAD17-RFC c 97.7 0.00044 9.5E-09 79.0 13.5 30 454-483 113-142 (634)
331 KOG0482 DNA replication licens 97.7 0.00074 1.6E-08 76.3 15.0 221 418-656 342-636 (721)
332 PRK13538 cytochrome c biogenes 97.7 4.2E-05 9.1E-10 78.5 5.0 48 437-484 11-60 (204)
333 TIGR03522 GldA_ABC_ATP gliding 97.7 4.2E-05 9E-10 83.6 5.0 49 436-484 11-61 (301)
334 TIGR01189 ccmA heme ABC export 97.7 4.7E-05 1E-09 77.8 5.0 47 437-483 10-58 (198)
335 PRK09452 potA putrescine/sperm 97.7 3.4E-05 7.5E-10 86.7 4.4 47 439-485 26-74 (375)
336 TIGR02211 LolD_lipo_ex lipopro 97.7 4.5E-05 9.7E-10 79.1 4.9 44 441-484 19-64 (221)
337 TIGR03258 PhnT 2-aminoethylpho 97.6 3.6E-05 7.7E-10 86.2 4.2 49 436-484 14-66 (362)
338 COG4586 ABC-type uncharacteriz 97.6 6.1E-05 1.3E-09 79.5 5.5 44 443-486 40-85 (325)
339 PRK11153 metN DL-methionine tr 97.6 1.7E-05 3.7E-10 88.2 1.2 45 440-484 18-64 (343)
340 PRK13541 cytochrome c biogenes 97.6 4.2E-05 9.2E-10 77.9 4.0 41 442-483 16-58 (195)
341 COG3267 ExeA Type II secretory 97.6 0.0015 3.3E-08 68.7 15.4 183 454-652 54-267 (269)
342 cd03300 ABC_PotA_N PotA is an 97.6 2.5E-05 5.4E-10 81.8 2.4 47 438-484 11-59 (232)
343 cd03231 ABC_CcmA_heme_exporter 97.6 0.00016 3.5E-09 74.1 8.2 46 438-483 11-58 (201)
344 COG1136 SalX ABC-type antimicr 97.6 0.00016 3.5E-09 75.3 8.0 42 441-482 19-62 (226)
345 PRK10070 glycine betaine trans 97.6 4.5E-05 9.8E-10 86.4 4.2 57 428-484 29-87 (400)
346 cd03283 ABC_MutS-like MutS-lik 97.6 0.00017 3.6E-09 74.2 7.9 31 445-475 19-49 (199)
347 PRK11819 putative ABC transpor 97.6 3.5E-05 7.6E-10 91.2 3.0 53 431-483 10-65 (556)
348 PF14532 Sigma54_activ_2: Sigm 97.6 7.2E-05 1.6E-09 72.0 4.6 83 453-564 23-108 (138)
349 PRK13546 teichoic acids export 97.6 0.00011 2.3E-09 78.9 6.4 44 439-482 36-81 (264)
350 cd03233 ABC_PDR_domain1 The pl 97.6 6.6E-05 1.4E-09 77.1 4.5 44 441-484 21-69 (202)
351 COG4525 TauB ABC-type taurine 97.6 0.00012 2.5E-09 74.0 5.9 44 442-485 20-65 (259)
352 PRK11176 lipid transporter ATP 97.6 0.00013 2.8E-09 86.8 7.3 46 440-485 356-403 (582)
353 PRK13640 cbiO cobalt transport 97.5 5.5E-05 1.2E-09 81.8 3.8 38 441-478 21-60 (282)
354 cd03254 ABCC_Glucan_exporter_l 97.5 0.00029 6.2E-09 73.5 9.0 43 441-483 17-61 (229)
355 cd03217 ABC_FeS_Assembly ABC-t 97.5 0.00011 2.4E-09 75.3 5.6 45 439-483 12-60 (200)
356 COG5271 MDN1 AAA ATPase contai 97.5 0.00019 4.2E-09 89.1 8.3 133 452-602 1544-1704(4600)
357 TIGR03797 NHPM_micro_ABC2 NHPM 97.5 0.00013 2.9E-09 88.4 7.2 56 429-484 453-512 (686)
358 TIGR02868 CydC thiol reductant 97.5 0.00015 3.3E-09 85.2 7.3 56 430-485 337-395 (529)
359 cd03232 ABC_PDR_domain2 The pl 97.5 5.3E-05 1.1E-09 77.1 2.9 35 441-475 21-57 (192)
360 PRK11174 cysteine/glutathione 97.5 0.00013 2.8E-09 86.9 6.6 46 439-485 362-409 (588)
361 PRK10851 sulfate/thiosulfate t 97.5 8.4E-05 1.8E-09 83.0 4.7 48 437-484 12-61 (353)
362 COG3840 ThiQ ABC-type thiamine 97.5 0.00011 2.4E-09 73.5 4.9 41 445-485 17-59 (231)
363 KOG0057 Mitochondrial Fe/S clu 97.5 0.00014 3.1E-09 83.1 6.4 127 432-567 356-519 (591)
364 COG1117 PstB ABC-type phosphat 97.5 0.00019 4.2E-09 73.4 6.6 49 427-475 7-57 (253)
365 PRK13636 cbiO cobalt transport 97.5 2E-05 4.2E-10 85.3 -0.6 45 440-484 19-65 (283)
366 COG4178 ABC-type uncharacteriz 97.5 0.00015 3.3E-09 84.9 6.6 117 441-567 407-547 (604)
367 PRK07132 DNA polymerase III su 97.5 0.00047 1E-08 75.2 10.0 127 449-599 16-160 (299)
368 PF03969 AFG1_ATPase: AFG1-lik 97.5 0.00012 2.5E-09 82.0 5.4 143 447-616 58-208 (362)
369 cd03235 ABC_Metallic_Cations A 97.5 4.1E-05 8.8E-10 79.0 1.6 52 433-484 5-58 (213)
370 PRK13635 cbiO cobalt transport 97.5 7.8E-05 1.7E-09 80.5 3.8 44 441-484 21-66 (279)
371 TIGR03796 NHPM_micro_ABC1 NHPM 97.5 0.00021 4.6E-09 87.0 7.9 56 429-484 479-538 (710)
372 TIGR02237 recomb_radB DNA repa 97.5 0.0003 6.5E-09 72.2 7.9 108 454-564 15-148 (209)
373 TIGR03608 L_ocin_972_ABC putat 97.5 4.1E-05 8.9E-10 78.4 1.5 50 436-485 7-58 (206)
374 PRK13650 cbiO cobalt transport 97.5 9.6E-05 2.1E-09 79.8 4.3 43 442-484 22-66 (279)
375 TIGR02314 ABC_MetN D-methionin 97.5 0.00011 2.5E-09 81.6 5.0 43 441-483 19-63 (343)
376 TIGR01186 proV glycine betaine 97.5 8E-05 1.7E-09 83.4 3.8 47 437-483 3-51 (363)
377 TIGR03269 met_CoM_red_A2 methy 97.5 3.3E-05 7.1E-10 90.7 0.7 48 436-483 9-60 (520)
378 PRK13652 cbiO cobalt transport 97.5 0.00011 2.3E-09 79.3 4.6 44 441-484 18-63 (277)
379 PRK13647 cbiO cobalt transport 97.5 0.0001 2.2E-09 79.4 4.4 44 441-484 19-64 (274)
380 PRK13643 cbiO cobalt transport 97.4 9.3E-05 2E-09 80.3 3.9 44 442-485 21-66 (288)
381 PRK13632 cbiO cobalt transport 97.4 0.00011 2.4E-09 78.9 4.4 43 441-483 23-67 (271)
382 COG4987 CydC ABC-type transpor 97.4 0.00018 3.8E-09 82.2 6.0 60 427-486 336-399 (573)
383 PRK13648 cbiO cobalt transport 97.4 0.00011 2.5E-09 78.7 4.4 43 442-484 24-68 (269)
384 PRK13644 cbiO cobalt transport 97.4 8.9E-05 1.9E-09 79.9 3.5 43 441-483 16-60 (274)
385 PF00931 NB-ARC: NB-ARC domain 97.4 0.00024 5.2E-09 76.2 6.8 154 454-630 22-202 (287)
386 COG4604 CeuD ABC-type enteroch 97.4 0.0003 6.4E-09 71.3 6.8 57 429-485 3-61 (252)
387 cd03298 ABC_ThiQ_thiamine_tran 97.4 0.00012 2.6E-09 75.4 4.1 40 445-484 16-57 (211)
388 PF12774 AAA_6: Hydrolytic ATP 97.4 0.00038 8.2E-09 73.3 7.8 125 452-597 33-176 (231)
389 TIGR03719 ABC_ABC_ChvD ATP-bin 97.4 7.7E-05 1.7E-09 88.2 3.0 52 432-483 9-63 (552)
390 TIGR00968 3a0106s01 sulfate AB 97.4 0.00016 3.5E-09 76.0 5.1 47 437-483 10-58 (237)
391 TIGR02203 MsbA_lipidA lipid A 97.4 0.00025 5.4E-09 84.0 7.3 45 441-485 346-392 (571)
392 PRK13651 cobalt transporter AT 97.4 9.9E-05 2.1E-09 80.8 3.5 44 441-484 21-66 (305)
393 cd03258 ABC_MetN_methionine_tr 97.4 5.7E-05 1.2E-09 79.0 1.5 45 441-485 19-65 (233)
394 TIGR02315 ABC_phnC phosphonate 97.4 6.3E-05 1.4E-09 79.1 1.8 46 439-484 14-61 (243)
395 PRK10247 putative ABC transpor 97.4 5.7E-05 1.2E-09 78.8 1.4 54 432-485 12-67 (225)
396 TIGR01277 thiQ thiamine ABC tr 97.4 0.00019 4.1E-09 74.1 5.1 40 444-483 15-56 (213)
397 cd03219 ABC_Mj1267_LivG_branch 97.4 6.4E-05 1.4E-09 78.7 1.5 49 436-484 9-59 (236)
398 cd03293 ABC_NrtD_SsuB_transpor 97.4 4.1E-05 9E-10 79.4 0.0 45 440-484 17-63 (220)
399 TIGR01166 cbiO cobalt transpor 97.4 0.00014 3E-09 73.7 3.8 45 440-484 5-51 (190)
400 cd03237 ABC_RNaseL_inhibitor_d 97.4 0.00038 8.2E-09 73.9 7.3 32 454-485 28-59 (246)
401 PRK13646 cbiO cobalt transport 97.4 0.00014 3.1E-09 78.7 4.2 44 441-484 21-66 (286)
402 cd03224 ABC_TM1139_LivF_branch 97.4 4.3E-05 9.4E-10 79.2 0.1 48 437-484 10-59 (222)
403 TIGR03375 type_I_sec_LssB type 97.4 0.00037 8E-09 84.7 8.1 56 430-485 466-525 (694)
404 PRK13409 putative ATPase RIL; 97.4 0.00033 7.1E-09 83.4 7.4 129 431-567 344-485 (590)
405 PRK13637 cbiO cobalt transport 97.4 0.00016 3.6E-09 78.4 4.5 43 441-483 21-65 (287)
406 COG0396 sufC Cysteine desulfur 97.3 0.0013 2.8E-08 68.2 10.5 36 441-476 18-55 (251)
407 PRK10895 lipopolysaccharide AB 97.3 7E-05 1.5E-09 78.8 1.3 51 435-485 11-63 (241)
408 PF13207 AAA_17: AAA domain; P 97.3 0.00014 3E-09 67.7 3.1 30 454-483 2-31 (121)
409 PF00910 RNA_helicase: RNA hel 97.3 0.00019 4.2E-09 66.2 4.0 25 454-478 1-25 (107)
410 COG4608 AppF ABC-type oligopep 97.3 0.00024 5.2E-09 75.4 5.2 83 442-524 28-141 (268)
411 COG3638 ABC-type phosphate/pho 97.3 0.00023 5E-09 73.9 4.9 55 431-485 7-64 (258)
412 cd03257 ABC_NikE_OppD_transpor 97.3 6.9E-05 1.5E-09 77.9 1.1 45 441-485 19-65 (228)
413 TIGR02858 spore_III_AA stage I 97.3 0.00035 7.5E-09 75.2 6.5 94 452-566 112-229 (270)
414 cd03263 ABC_subfamily_A The AB 97.3 6.8E-05 1.5E-09 77.7 1.0 45 440-484 15-61 (220)
415 TIGR01193 bacteriocin_ABC ABC- 97.3 0.0004 8.7E-09 84.6 7.8 56 430-485 476-534 (708)
416 PF00005 ABC_tran: ABC transpo 97.3 0.00014 2.9E-09 69.4 3.0 42 444-485 2-45 (137)
417 TIGR00958 3a01208 Conjugate Tr 97.3 0.00037 7.9E-09 85.0 7.3 56 429-484 480-540 (711)
418 cd03256 ABC_PhnC_transporter A 97.3 7.4E-05 1.6E-09 78.4 1.0 45 440-484 14-60 (241)
419 TIGR03864 PQQ_ABC_ATP ABC tran 97.3 7.9E-05 1.7E-09 78.2 1.1 48 437-484 11-60 (236)
420 cd03260 ABC_PstB_phosphate_tra 97.3 5.6E-05 1.2E-09 78.8 -0.0 48 437-484 10-64 (227)
421 cd03299 ABC_ModC_like Archeal 97.3 0.00024 5.1E-09 74.7 4.7 42 442-483 14-57 (235)
422 PRK11264 putative amino-acid A 97.3 8.6E-05 1.9E-09 78.5 1.4 52 433-484 9-62 (250)
423 TIGR01618 phage_P_loop phage n 97.3 0.0011 2.3E-08 69.3 9.4 72 451-524 12-95 (220)
424 PLN03210 Resistant to P. syrin 97.3 0.0013 2.8E-08 84.4 12.1 175 415-623 181-389 (1153)
425 PRK11160 cysteine/glutathione 97.3 0.00067 1.5E-08 80.7 8.8 56 430-485 341-400 (574)
426 cd03262 ABC_HisP_GlnQ_permease 97.3 0.00019 4.1E-09 73.9 3.7 49 437-485 10-60 (213)
427 KOG0058 Peptide exporter, ABC 97.3 0.00065 1.4E-08 80.2 8.3 134 427-568 465-637 (716)
428 TIGR02323 CP_lyasePhnK phospho 97.3 8.2E-05 1.8E-09 78.9 0.8 49 437-485 13-63 (253)
429 PRK13657 cyclic beta-1,2-gluca 97.3 0.00045 9.7E-09 82.3 7.1 53 431-483 338-393 (588)
430 TIGR03410 urea_trans_UrtE urea 97.3 0.00019 4.2E-09 74.9 3.5 49 437-485 10-60 (230)
431 PRK11831 putative ABC transpor 97.2 8.8E-05 1.9E-09 79.6 0.8 50 435-484 15-66 (269)
432 PRK11300 livG leucine/isoleuci 97.2 4.9E-05 1.1E-09 80.6 -1.1 54 432-485 10-65 (255)
433 TIGR01978 sufC FeS assembly AT 97.2 7.8E-05 1.7E-09 78.4 0.4 49 436-484 9-61 (243)
434 COG1137 YhbG ABC-type (unclass 97.2 0.00021 4.5E-09 72.5 3.3 57 429-485 6-64 (243)
435 cd01124 KaiC KaiC is a circadi 97.2 0.0013 2.9E-08 65.8 9.3 32 454-485 2-36 (187)
436 KOG0062 ATPase component of AB 97.2 0.00059 1.3E-08 77.6 7.2 129 432-568 85-231 (582)
437 PRK11248 tauB taurine transpor 97.2 0.00021 4.6E-09 76.1 3.6 48 437-484 11-60 (255)
438 PRK10619 histidine/lysine/argi 97.2 6.4E-05 1.4E-09 80.0 -0.4 55 431-485 9-65 (257)
439 cd01121 Sms Sms (bacterial rad 97.2 0.0012 2.6E-08 74.3 9.6 71 454-524 85-172 (372)
440 PRK10908 cell division protein 97.2 0.0001 2.2E-09 76.6 1.0 46 440-485 15-62 (222)
441 PRK08118 topology modulation p 97.2 0.00043 9.3E-09 69.2 5.4 32 453-484 3-34 (167)
442 TIGR03005 ectoine_ehuA ectoine 97.2 9.7E-05 2.1E-09 78.3 0.8 49 437-485 10-60 (252)
443 PRK13642 cbiO cobalt transport 97.2 0.00021 4.6E-09 77.0 3.4 42 442-483 22-65 (277)
444 cd03243 ABC_MutS_homologs The 97.2 0.0009 1.9E-08 68.7 7.9 20 454-473 32-51 (202)
445 cd01131 PilT Pilus retraction 97.2 0.00037 8E-09 71.5 5.0 66 454-519 4-83 (198)
446 PRK11124 artP arginine transpo 97.2 0.00027 5.8E-09 74.5 4.0 49 437-485 12-62 (242)
447 PRK11144 modC molybdate transp 97.2 0.00034 7.4E-09 78.1 5.0 40 445-484 16-57 (352)
448 PF12775 AAA_7: P-loop contain 97.2 0.00032 6.9E-09 75.6 4.6 135 453-602 35-194 (272)
449 TIGR03411 urea_trans_UrtD urea 97.2 0.0001 2.2E-09 77.5 0.8 50 436-485 11-62 (242)
450 TIGR02857 CydD thiol reductant 97.2 0.00061 1.3E-08 80.1 7.3 44 441-484 336-381 (529)
451 PRK13540 cytochrome c biogenes 97.2 0.00029 6.2E-09 72.1 3.8 48 437-484 11-60 (200)
452 PRK11701 phnK phosphonate C-P 97.2 0.00011 2.3E-09 78.3 0.7 50 435-484 14-65 (258)
453 cd03264 ABC_drug_resistance_li 97.2 0.00029 6.2E-09 72.6 3.8 45 440-484 13-58 (211)
454 COG4152 ABC-type uncharacteriz 97.2 0.00038 8.3E-09 72.6 4.5 93 430-525 5-99 (300)
455 COG4988 CydD ABC-type transpor 97.2 0.00064 1.4E-08 78.6 6.8 57 430-486 323-382 (559)
456 PRK14250 phosphate ABC transpo 97.2 0.00028 6.2E-09 74.4 3.7 47 439-485 15-63 (241)
457 COG1101 PhnK ABC-type uncharac 97.2 0.0012 2.5E-08 68.0 7.8 85 442-527 21-110 (263)
458 PRK07261 topology modulation p 97.2 0.00059 1.3E-08 68.4 5.7 31 454-484 3-33 (171)
459 PRK15079 oligopeptide ABC tran 97.2 0.0004 8.8E-09 76.9 5.0 43 441-483 35-79 (331)
460 PRK13547 hmuV hemin importer A 97.2 9.4E-05 2E-09 79.7 -0.0 43 436-478 10-54 (272)
461 PRK10790 putative multidrug tr 97.2 0.00064 1.4E-08 81.0 7.1 44 441-484 355-400 (592)
462 cd03292 ABC_FtsE_transporter F 97.2 0.0003 6.5E-09 72.5 3.7 44 441-484 15-60 (214)
463 PRK12726 flagellar biosynthesi 97.2 0.037 8E-07 62.2 20.2 35 453-487 208-245 (407)
464 PRK10522 multidrug transporter 97.2 0.0011 2.3E-08 78.5 8.8 45 441-485 337-383 (547)
465 cd03280 ABC_MutS2 MutS2 homolo 97.2 0.00078 1.7E-08 69.1 6.7 28 445-472 19-49 (200)
466 PRK09493 glnQ glutamine ABC tr 97.2 0.00032 7E-09 73.7 3.9 49 437-485 11-61 (240)
467 TIGR02204 MsbA_rel ABC transpo 97.2 0.00069 1.5E-08 80.4 7.1 44 441-484 354-399 (576)
468 cd01130 VirB11-like_ATPase Typ 97.1 0.00046 1E-08 70.0 4.8 68 453-520 27-110 (186)
469 TIGR01846 type_I_sec_HlyB type 97.1 0.00079 1.7E-08 81.9 7.6 57 429-485 457-517 (694)
470 PRK13545 tagH teichoic acids e 97.1 0.00093 2E-08 77.7 7.7 44 441-484 38-83 (549)
471 TIGR03873 F420-0_ABC_ATP propo 97.1 0.0001 2.2E-09 78.4 -0.2 49 436-484 10-60 (256)
472 PRK11629 lolD lipoprotein tran 97.1 0.00033 7.3E-09 73.3 3.7 45 441-485 23-69 (233)
473 PRK10789 putative multidrug tr 97.1 0.00082 1.8E-08 79.9 7.4 44 441-484 329-374 (569)
474 PRK11231 fecE iron-dicitrate t 97.1 0.00013 2.9E-09 77.5 0.6 49 436-484 11-61 (255)
475 PRK10575 iron-hydroxamate tran 97.1 0.00014 3E-09 77.9 0.7 54 431-484 15-70 (265)
476 PRK11614 livF leucine/isoleuci 97.1 0.00014 3E-09 76.4 0.7 49 436-484 14-64 (237)
477 cd03295 ABC_OpuCA_Osmoprotecti 97.1 0.00035 7.5E-09 73.7 3.6 45 440-484 14-60 (242)
478 TIGR03740 galliderm_ABC gallid 97.1 0.00015 3.3E-09 75.3 0.9 48 437-484 10-59 (223)
479 PRK10584 putative ABC transpor 97.1 0.00037 7.9E-09 72.7 3.7 43 442-484 25-69 (228)
480 PRK13548 hmuV hemin importer A 97.1 0.00035 7.5E-09 74.5 3.5 48 437-484 12-61 (258)
481 smart00534 MUTSac ATPase domai 97.1 0.00097 2.1E-08 67.6 6.6 19 454-472 2-20 (185)
482 TIGR02012 tigrfam_recA protein 97.1 0.0016 3.4E-08 71.7 8.4 111 454-564 58-190 (321)
483 PRK14267 phosphate ABC transpo 97.1 0.00017 3.6E-09 76.5 0.8 49 436-484 13-68 (253)
484 PRK10261 glutathione transport 97.1 0.00046 1E-08 82.9 4.7 44 441-484 338-383 (623)
485 TIGR01842 type_I_sec_PrtD type 97.1 0.00092 2E-08 79.0 7.0 44 441-484 332-377 (544)
486 PRK14242 phosphate transporter 97.1 0.00019 4.1E-09 76.1 1.1 41 436-476 15-57 (253)
487 PRK10253 iron-enterobactin tra 97.1 0.00043 9.2E-09 74.1 3.8 49 436-484 16-66 (265)
488 TIGR01192 chvA glucan exporter 97.1 0.001 2.2E-08 79.3 7.3 44 441-484 349-394 (585)
489 COG1485 Predicted ATPase [Gene 97.1 0.00086 1.9E-08 73.5 6.0 125 423-566 30-171 (367)
490 PRK14247 phosphate ABC transpo 97.1 0.00021 4.4E-09 75.7 1.3 49 436-484 12-67 (250)
491 KOG1968 Replication factor C, 97.0 0.00041 8.8E-09 84.9 3.8 162 454-637 360-535 (871)
492 COG1618 Predicted nucleotide k 97.0 0.0038 8.3E-08 61.5 9.7 23 453-475 7-29 (179)
493 TIGR00972 3a0107s01c2 phosphat 97.0 0.0005 1.1E-08 72.7 4.0 45 440-484 14-65 (247)
494 PRK11823 DNA repair protein Ra 97.0 0.0021 4.5E-08 74.2 9.3 71 454-524 83-170 (446)
495 PRK14262 phosphate ABC transpo 97.0 0.00021 4.6E-09 75.6 1.0 41 436-476 12-54 (250)
496 PRK13409 putative ATPase RIL; 97.0 0.0007 1.5E-08 80.7 5.5 50 433-483 79-131 (590)
497 PRK14274 phosphate ABC transpo 97.0 0.00012 2.6E-09 78.0 -0.9 46 431-476 16-63 (259)
498 cd03287 ABC_MSH3_euk MutS3 hom 97.0 0.00056 1.2E-08 71.5 4.1 30 444-473 22-53 (222)
499 PRK15177 Vi polysaccharide exp 97.0 0.00037 8E-09 72.3 2.7 40 443-482 3-44 (213)
500 TIGR01194 cyc_pep_trnsptr cycl 97.0 0.0016 3.5E-08 77.2 8.4 44 442-485 357-402 (555)
No 1
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-78 Score=660.49 Aligned_cols=375 Identities=41% Similarity=0.595 Sum_probs=351.9
Q ss_pred cccCccccccCccCchHHHHHHHHHHHhccccccccccCcccCCceEEECCCCCchhHHHHHhhhhccccEEEeecccee
Q 003795 409 LERGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFV 488 (795)
Q Consensus 409 ~~~~~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~se~~ 488 (795)
++...++.|.++.|+++.+.++++++.++++|..|.++|-++|+||||+||||||||.|||++||+.++||++.++++|-
T Consensus 295 p~~~~nv~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFd 374 (752)
T KOG0734|consen 295 PEQMKNVTFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFD 374 (752)
T ss_pred hhhhcccccccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchh
Confidence 33445788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccchhhHHhHHHHHHhcCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcccCCCcEEEEeccCCCCC
Q 003795 489 EIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDI 568 (795)
Q Consensus 489 ~~~~g~~~~~l~~lf~~ar~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVIatTN~~d~ 568 (795)
++|+|++..+++.+|..|+..+||||||||||+++++|.. +...+.++++|+||.+||+|..+.+|+||++||.|+.
T Consensus 375 Em~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~---~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~ 451 (752)
T KOG0734|consen 375 EMFVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNP---SDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEA 451 (752)
T ss_pred hhhhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCc---cHHHHHHHHHHHHHHHhcCcCcCCceEEEeccCChhh
Confidence 9999999999999999999999999999999999988743 4445899999999999999999999999999999999
Q ss_pred CCccccCCCcccceecCCCCCHHHHHHHHHHHHccCCCCChhhHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCccCH
Q 003795 569 LDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITT 648 (795)
Q Consensus 569 LdpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~~~~~d~dl~~LA~~t~G~sgadL~~lv~~A~~~A~~~~~~~It~ 648 (795)
||++|.||||||++|.+|.||...|.+||..|+.++.+..++|+..||+-|.||+|+||.|++|+|++.|+..+...|++
T Consensus 452 LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~dga~~VtM 531 (752)
T KOG0734|consen 452 LDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLANLVNQAALKAAVDGAEMVTM 531 (752)
T ss_pred hhHHhcCCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHHHHHHHHHHHHHhcCcccccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccccc-ccccchhhhHHHHHHHHHHHHHHhcCCCCccceEEEecCCCccccceeecccchhhhhcccc
Q 003795 649 DDLLQAAQIEERGMLDR-KERSSETWRQVAINEAAMAVVAVNFPDLKNIEFVTIAPRAGRELGYVRMKMDHMKFKEGMLS 727 (795)
Q Consensus 649 edl~~Al~~~~~~~~~~-~~~~~~~~~~va~hEaGhalva~~l~~~~~i~~vtI~pr~g~~lG~~~~~~~e~~~~~~~~t 727 (795)
.|++.|-+....|.-.+ .-.+++.++++||||.|||+|+.++.+..|++++||.|| |.++|+|.+.|+.+ ++.+|
T Consensus 532 ~~LE~akDrIlMG~ERks~~i~~eak~~TAyHE~GHAivA~yTk~A~PlhKaTImPR-G~sLG~t~~LPe~D---~~~~T 607 (752)
T KOG0734|consen 532 KHLEFAKDRILMGPERKSMVIDEEAKKITAYHEGGHAIVALYTKGAMPLHKATIMPR-GPSLGHTSQLPEKD---RYSIT 607 (752)
T ss_pred HHHhhhhhheeecccccccccChhhhhhhhhhccCceEEEeecCCCccccceeeccC-CccccceeecCccc---hhhHH
Confidence 99999988554433221 123477889999999999999999999999999999999 99999999999876 78999
Q ss_pred HHHHHHHHHHHhChHHHHHHHhCCCCcccchhhhHHHHHHHHHHHH-HhcCCCCCCCcccccccc
Q 003795 728 RQSLLDHITVQLAPRAADELWCGEGQLSTIWAETADNARSAARTFV-LGGLSDKHFGLSNFWVAD 791 (795)
Q Consensus 728 r~~ll~~I~vlLaGRaAEel~~G~~~vstGa~~Dl~~At~iA~~mV-~~Gm~~~~~g~~~~~~~~ 791 (795)
|.++++++.||||||+|||++||.|++||||++||++||.+|+.|| .|||||+. |++++..++
T Consensus 608 k~q~LA~lDV~MGGRvAEELIfG~D~iTsGAssDl~qAT~lA~~MVt~fGMSd~v-G~v~~~~~~ 671 (752)
T KOG0734|consen 608 KAQLLARLDVCMGGRVAEELIFGTDKITSGASSDLDQATKLARRMVTKFGMSDKV-GPVTLSAED 671 (752)
T ss_pred HHHHHHHHHHhhcchHHHHHhccCCcccccccchHHHHHHHHHHHHHHcCccccc-cceeeeccC
Confidence 9999999999999999999999999999999999999999999999 99999986 999886544
No 2
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.5e-71 Score=635.00 Aligned_cols=373 Identities=49% Similarity=0.723 Sum_probs=351.7
Q ss_pred ccCccccccCccCchHHHHHHHHHHHhccccccccccCcccCCceEEECCCCCchhHHHHHhhhhccccEEEeeccceeh
Q 003795 410 ERGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVE 489 (795)
Q Consensus 410 ~~~~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~se~~~ 489 (795)
+....+.|.|+.|+++++.++.+++.+++++..|.++|.++|+|+||+||||||||.||||+|++.++||+.+++++|++
T Consensus 303 ~~~t~V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE 382 (774)
T KOG0731|consen 303 EGNTGVKFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVE 382 (774)
T ss_pred CCCCCCccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHH
Confidence 34566999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccchhhHHhHHHHHHhcCCceeEhHHHHHHhhhcc-CCCCCCcchHHHHHHHHHHhhhcccCCCcEEEEeccCCCCC
Q 003795 490 IYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERG-LIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDI 568 (795)
Q Consensus 490 ~~~g~~~~~l~~lf~~ar~~~p~Il~IDEID~l~~~r~-~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVIatTN~~d~ 568 (795)
+++|.+..+++.+|..++..+|||+||||||.++..|+ .+.++++.+...++|+||.+||++....+|+|+++||++|.
T Consensus 383 ~~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ 462 (774)
T KOG0731|consen 383 MFVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDI 462 (774)
T ss_pred HhcccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccc
Confidence 99999999999999999999999999999999999884 34557788889999999999999999999999999999999
Q ss_pred CCccccCCCcccceecCCCCCHHHHHHHHHHHHccCCCC-ChhhHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCccC
Q 003795 569 LDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEIT 647 (795)
Q Consensus 569 LdpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~~~~-~d~dl~~LA~~t~G~sgadL~~lv~~A~~~A~~~~~~~It 647 (795)
||++|+||||||+.|+++.|+..+|.+|++.|+++..+. +++|+..+|..|+||+|+||.++|++|++.|++.+...|+
T Consensus 463 ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~~~~~i~ 542 (774)
T KOG0731|consen 463 LDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALLAARKGLREIG 542 (774)
T ss_pred cCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHHhccCccc
Confidence 999999999999999999999999999999999999885 7889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccc-cccccchhhhHHHHHHHHHHHHHHhcCCCCccceEEEecCCCccccceeecccchhhhhccc
Q 003795 648 TDDLLQAAQIEERGMLD-RKERSSETWRQVAINEAAMAVVAVNFPDLKNIEFVTIAPRAGRELGYVRMKMDHMKFKEGML 726 (795)
Q Consensus 648 ~edl~~Al~~~~~~~~~-~~~~~~~~~~~va~hEaGhalva~~l~~~~~i~~vtI~pr~g~~lG~~~~~~~e~~~~~~~~ 726 (795)
..|+..|+++...++.. ....+.++++.+|+||||||+++|++++.+++.+|+|+| |.++||++|.|+++ +++
T Consensus 543 ~~~~~~a~~Rvi~G~~~~~~~~~~~~~~~~a~~eagha~~g~~l~~~dpl~kvsIiP--GqalG~a~~~P~~~----~l~ 616 (774)
T KOG0731|consen 543 TKDLEYAIERVIAGMEKKSRVLSLEEKKTVAYHEAGHAVVGWLLEHADPLLKVSIIP--GQALGYAQYLPTDD----YLL 616 (774)
T ss_pred hhhHHHHHHHHhccccccchhcCHhhhhhhhhhhccchhhhccccccCcceeEEecc--CCccceEEECCccc----ccc
Confidence 99999999977776533 455678899999999999999999999999999999999 44999999999975 899
Q ss_pred cHHHHHHHHHHHhChHHHHHHHhCCCCcccchhhhHHHHHHHHHHHH-HhcCCCCCCCccccccc
Q 003795 727 SRQSLLDHITVQLAPRAADELWCGEGQLSTIWAETADNARSAARTFV-LGGLSDKHFGLSNFWVA 790 (795)
Q Consensus 727 tr~~ll~~I~vlLaGRaAEel~~G~~~vstGa~~Dl~~At~iA~~mV-~~Gm~~~~~g~~~~~~~ 790 (795)
|+++|+++|||+|||||||+++|| +++||||++||++||++||.|| +|||+++. |.++|...
T Consensus 617 sk~ql~~rm~m~LGGRaAEev~fg-~~iTtga~ddl~kvT~~A~~~V~~~Gms~ki-g~~~~~~~ 679 (774)
T KOG0731|consen 617 SKEQLFDRMVMALGGRAAEEVVFG-SEITTGAQDDLEKVTKIARAMVASFGMSEKI-GPISFQML 679 (774)
T ss_pred cHHHHHHHHHHHhCcchhhheecC-CccCchhhccHHHHHHHHHHHHHHcCccccc-CceeccCc
Confidence 999999999999999999999999 7899999999999999999999 99999986 99998543
No 3
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-69 Score=616.17 Aligned_cols=373 Identities=49% Similarity=0.748 Sum_probs=358.0
Q ss_pred CccccccCccCchHHHHHHHHHHHhccccccccccCcccCCceEEECCCCCchhHHHHHhhhhccccEEEeeccceehhh
Q 003795 412 GVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIY 491 (795)
Q Consensus 412 ~~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~se~~~~~ 491 (795)
...+.|.++.|.++.+.++.+++.++.++..|..+|.++|+|++|+||||||||.|||++|++.+.||+++++++|+++|
T Consensus 144 ~~~v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemf 223 (596)
T COG0465 144 QVKVTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMF 223 (596)
T ss_pred ccCcChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhh
Confidence 56799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccchhhHHhHHHHHHhcCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcccCCCcEEEEeccCCCCCCCc
Q 003795 492 VGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDP 571 (795)
Q Consensus 492 ~g~~~~~l~~lf~~ar~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVIatTN~~d~Ldp 571 (795)
+|.+..+++.+|.+++..+|||+||||||+++..|+...++|..++.+++|+||.+||++..+.+|+||++||+||.+||
T Consensus 224 VGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRpdVlD~ 303 (596)
T COG0465 224 VGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPDVLDP 303 (596)
T ss_pred cCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEecCCCcccchH
Confidence 99999999999999999999999999999999999887888899999999999999999999999999999999999999
Q ss_pred cccCCCcccceecCCCCCHHHHHHHHHHHHccCCCCChhhHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCccCHHHH
Q 003795 572 ALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDL 651 (795)
Q Consensus 572 aLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~~~~~d~dl~~LA~~t~G~sgadL~~lv~~A~~~A~~~~~~~It~edl 651 (795)
+|+||||||++|.++.||...|.+|++.|+++.++.+++|+..+|+.|+||+|+|+.+++|+|++.|.++++..|++.||
T Consensus 304 ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~n~~~i~~~~i 383 (596)
T COG0465 304 ALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLANLLNEAALLAARRNKKEITMRDI 383 (596)
T ss_pred hhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHhcCeeEeccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccccccc-ccchhhhHHHHHHHHHHHHHHhcCCCCccceEEEecCCCccccceeecccchhhhhccccHHH
Q 003795 652 LQAAQIEERGMLDRKE-RSSETWRQVAINEAAMAVVAVNFPDLKNIEFVTIAPRAGRELGYVRMKMDHMKFKEGMLSRQS 730 (795)
Q Consensus 652 ~~Al~~~~~~~~~~~~-~~~~~~~~va~hEaGhalva~~l~~~~~i~~vtI~pr~g~~lG~~~~~~~e~~~~~~~~tr~~ 730 (795)
.+|++....+...+.. .++.+++.+||||+|||++++++++.++++++||+|| |.++||+.+.|.++ .+++|+.+
T Consensus 384 ~ea~drv~~G~erks~vise~ek~~~AYhEaghalv~~~l~~~d~v~KvtIiPr-G~alG~t~~~Pe~d---~~l~sk~~ 459 (596)
T COG0465 384 EEAIDRVIAGPERKSRVISEAEKKITAYHEAGHALVGLLLPDADPVHKVTIIPR-GRALGYTLFLPEED---KYLMSKEE 459 (596)
T ss_pred HHHHHHHhcCcCcCCcccChhhhcchHHHHHHHHHHHHhCCCCcccceeeeccC-chhhcchhcCCccc---cccccHHH
Confidence 9999988776554443 6789999999999999999999999999999999999 79999999999885 78999999
Q ss_pred HHHHHHHHhChHHHHHHHhCCCCcccchhhhHHHHHHHHHHHH-HhcCCCCCCCccccccc
Q 003795 731 LLDHITVQLAPRAADELWCGEGQLSTIWAETADNARSAARTFV-LGGLSDKHFGLSNFWVA 790 (795)
Q Consensus 731 ll~~I~vlLaGRaAEel~~G~~~vstGa~~Dl~~At~iA~~mV-~~Gm~~~~~g~~~~~~~ 790 (795)
++++|+++|||||||+++||. ++||||++|+++||.+|+.|| +|||+++. |.+.|...
T Consensus 460 l~~~i~~~lgGRaAEel~~g~-e~ttGa~~D~~~at~~ar~mVt~~Gms~~l-G~v~~~~~ 518 (596)
T COG0465 460 LLDRIDVLLGGRAAEELIFGY-EITTGASNDLEKATDLARAMVTEYGMSAKL-GPVAYEQV 518 (596)
T ss_pred HHHHHHHHhCCcHhhhhhhcc-cccccchhhHHHHHHHHHHhhhhcCcchhh-Cceehhhc
Confidence 999999999999999999996 699999999999999999999 99999985 99998754
No 4
>CHL00176 ftsH cell division protein; Validated
Probab=100.00 E-value=6.3e-63 Score=577.54 Aligned_cols=371 Identities=43% Similarity=0.679 Sum_probs=343.7
Q ss_pred CccccccCccCchHHHHHHHHHHHhccccccccccCcccCCceEEECCCCCchhHHHHHhhhhccccEEEeeccceehhh
Q 003795 412 GVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIY 491 (795)
Q Consensus 412 ~~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~se~~~~~ 491 (795)
...+.|+++.|+++.+.++.+++..+.++..|..+|...|+|+||+||||||||+||+++|++++.+++.++++++...+
T Consensus 177 ~~~~~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~ 256 (638)
T CHL00176 177 DTGITFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMF 256 (638)
T ss_pred CCCCCHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHh
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccchhhHHhHHHHHHhcCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcccCCCcEEEEeccCCCCCCCc
Q 003795 492 VGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDP 571 (795)
Q Consensus 492 ~g~~~~~l~~lf~~ar~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVIatTN~~d~Ldp 571 (795)
.|.....++.+|..++...|||+||||||.++..++...++++.....+++.||.++|++..+.+++||++||+++.+|+
T Consensus 257 ~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ 336 (638)
T CHL00176 257 VGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDA 336 (638)
T ss_pred hhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhh
Confidence 98888889999999999999999999999998877654455666777899999999999988889999999999999999
Q ss_pred cccCCCcccceecCCCCCHHHHHHHHHHHHccCCCCChhhHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCccCHHHH
Q 003795 572 ALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDL 651 (795)
Q Consensus 572 aLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~~~~~d~dl~~LA~~t~G~sgadL~~lv~~A~~~A~~~~~~~It~edl 651 (795)
+++||||||+.|.|++|+.++|.+||+.+++.....++.++..+|..|.||+++||.+++++|++.+.+++...|+.+||
T Consensus 337 ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~~~~~It~~dl 416 (638)
T CHL00176 337 ALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSLELIARRTPGFSGADLANLLNEAAILTARRKKATITMKEI 416 (638)
T ss_pred hhhccccCceEEEECCCCHHHHHHHHHHHHhhcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHH
Confidence 99999999999999999999999999999999888888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccccccccchhhhHHHHHHHHHHHHHHhcCCCCccceEEEecCCCccccceeecccchhhhhccccHHHH
Q 003795 652 LQAAQIEERGMLDRKERSSETWRQVAINEAAMAVVAVNFPDLKNIEFVTIAPRAGRELGYVRMKMDHMKFKEGMLSRQSL 731 (795)
Q Consensus 652 ~~Al~~~~~~~~~~~~~~~~~~~~va~hEaGhalva~~l~~~~~i~~vtI~pr~g~~lG~~~~~~~e~~~~~~~~tr~~l 731 (795)
..|++....+.......++.+++++||||+||||+++++++.++|++|||.|| |.++||+++.|.++ .+++||.++
T Consensus 417 ~~Ai~rv~~g~~~~~~~~~~~~~~vA~hEaGhA~v~~~l~~~~~v~kvtI~pr-g~~~G~~~~~p~~~---~~~~t~~~l 492 (638)
T CHL00176 417 DTAIDRVIAGLEGTPLEDSKNKRLIAYHEVGHAIVGTLLPNHDPVQKVTLIPR-GQAKGLTWFTPEED---QSLVSRSQI 492 (638)
T ss_pred HHHHHHHHhhhccCccccHHHHHHHHHHhhhhHHHHhhccCCCceEEEEEeec-CCCCCceEecCCcc---cccccHHHH
Confidence 99998765554433344577899999999999999999999999999999999 88999999999765 688999999
Q ss_pred HHHHHHHhChHHHHHHHhCCCCcccchhhhHHHHHHHHHHHH-HhcCCCCCCCccccc
Q 003795 732 LDHITVQLAPRAADELWCGEGQLSTIWAETADNARSAARTFV-LGGLSDKHFGLSNFW 788 (795)
Q Consensus 732 l~~I~vlLaGRaAEel~~G~~~vstGa~~Dl~~At~iA~~mV-~~Gm~~~~~g~~~~~ 788 (795)
+++|+++|||||||+++||++++||||++||++||++|+.|| +|||++ +|+++|.
T Consensus 493 ~~~i~~~LgGraAE~~~fg~~~~~~Ga~~Dl~~AT~iA~~mv~~~Gm~~--~g~~~~~ 548 (638)
T CHL00176 493 LARIVGALGGRAAEEVVFGSTEVTTGASNDLQQVTNLARQMVTRFGMSS--IGPISLE 548 (638)
T ss_pred HHHHHHHhhhHHHHHHhcCCCCcCCCchhHHHHHHHHHHHHHHHhCCCc--CCceeec
Confidence 999999999999999999987899999999999999999999 999994 6988874
No 5
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=100.00 E-value=1.4e-60 Score=563.07 Aligned_cols=372 Identities=42% Similarity=0.655 Sum_probs=341.3
Q ss_pred ccccccCccCchHHHHHHHHHHHhccccccccccCcccCCceEEECCCCCchhHHHHHhhhhccccEEEeeccceehhhh
Q 003795 413 VDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYV 492 (795)
Q Consensus 413 ~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~se~~~~~~ 492 (795)
....|.++.|+...+.++.+++..+..+..+..++..+|+|++|+||||||||+++++++++++.+++.++++++...+.
T Consensus 147 ~~~~~~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~ 226 (644)
T PRK10733 147 IKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFV 226 (644)
T ss_pred hhCcHHHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhh
Confidence 45668889999999999999999988888888889999999999999999999999999999999999999999999999
Q ss_pred ccchhhHHhHHHHHHhcCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcccCCCcEEEEeccCCCCCCCcc
Q 003795 493 GVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPA 572 (795)
Q Consensus 493 g~~~~~l~~lf~~ar~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVIatTN~~d~Ldpa 572 (795)
|.+...++.+|..++...|||+||||+|.++..++...+++......+++.||.+||++..+.+++||+|||+++.|||+
T Consensus 227 g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~A 306 (644)
T PRK10733 227 GVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPA 306 (644)
T ss_pred cccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHH
Confidence 99999999999999999999999999999988776544455567778999999999999988999999999999999999
Q ss_pred ccCCCcccceecCCCCCHHHHHHHHHHHHccCCCCChhhHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHH
Q 003795 573 LVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLL 652 (795)
Q Consensus 573 LlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~~~~~d~dl~~LA~~t~G~sgadL~~lv~~A~~~A~~~~~~~It~edl~ 652 (795)
++||||||+.|.|+.|+.++|.+|++.|+++.++..++++..+|..|.||||+||.++|++|+..|.+.++..|+..|+.
T Consensus 307 l~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~sgadl~~l~~eAa~~a~r~~~~~i~~~d~~ 386 (644)
T PRK10733 307 LLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVEFE 386 (644)
T ss_pred HhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHcCCCcccHHHHH
Confidence 99999999999999999999999999999999988899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccccc-ccccchhhhHHHHHHHHHHHHHHhcCCCCccceEEEecCCCccccceeecccchhhhhccccHHHH
Q 003795 653 QAAQIEERGMLDR-KERSSETWRQVAINEAAMAVVAVNFPDLKNIEFVTIAPRAGRELGYVRMKMDHMKFKEGMLSRQSL 731 (795)
Q Consensus 653 ~Al~~~~~~~~~~-~~~~~~~~~~va~hEaGhalva~~l~~~~~i~~vtI~pr~g~~lG~~~~~~~e~~~~~~~~tr~~l 731 (795)
.|++....+...+ .....++++.+||||+||||++++++..+++++|||+|| |.++||+.+.|.++ ..+.||.+|
T Consensus 387 ~a~~~v~~g~~~~~~~~~~~~~~~~a~he~gha~~~~~~~~~~~~~~v~i~pr-g~~~g~~~~~~~~~---~~~~~~~~l 462 (644)
T PRK10733 387 KAKDKIMMGAERRSMVMTEAQKESTAYHEAGHAIIGRLVPEHDPVHKVTIIPR-GRALGVTFFLPEGD---AISASRQKL 462 (644)
T ss_pred HHHHHHhcccccccccccHHHHHHHHHHHHHHHHHHHHccCCCceeEEEEecc-CCCcceeEECCCcc---cccccHHHH
Confidence 9998665443322 234567899999999999999999999999999999999 88999999999875 567899999
Q ss_pred HHHHHHHhChHHHHHHHhCCCCcccchhhhHHHHHHHHHHHH-HhcCCCCCCCcccccc
Q 003795 732 LDHITVQLAPRAADELWCGEGQLSTIWAETADNARSAARTFV-LGGLSDKHFGLSNFWV 789 (795)
Q Consensus 732 l~~I~vlLaGRaAEel~~G~~~vstGa~~Dl~~At~iA~~mV-~~Gm~~~~~g~~~~~~ 789 (795)
+++|+|+|||||||+++||.+++||||++||++||.||+.|| +||||++. |++.|..
T Consensus 463 ~~~i~~~lgGraAE~~~~g~~~~ttGa~~Dl~~AT~lA~~mv~~~Gms~~l-g~~~~~~ 520 (644)
T PRK10733 463 ESQISTLYGGRLAEEIIYGPEHVSTGASNDIKVATNLARNMVTQWGFSEKL-GPLLYAE 520 (644)
T ss_pred HHHHHHHHhhHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhCCCccc-cchhhcc
Confidence 999999999999999999988899999999999999999999 99999975 9887753
No 6
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=100.00 E-value=3.2e-59 Score=538.61 Aligned_cols=373 Identities=49% Similarity=0.730 Sum_probs=340.8
Q ss_pred ccCccccccCccCchHHHHHHHHHHHhccccccccccCcccCCceEEECCCCCchhHHHHHhhhhccccEEEeeccceeh
Q 003795 410 ERGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVE 489 (795)
Q Consensus 410 ~~~~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~se~~~ 489 (795)
...+.++|+++.|++..+..+.+++..+.++..+...|...|+|+||+||||||||+|+++||++++.+++.++++++.+
T Consensus 47 ~~~~~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~ 126 (495)
T TIGR01241 47 EEKPKVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVE 126 (495)
T ss_pred CCCCCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHH
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccchhhHHhHHHHHHhcCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcccCCCcEEEEeccCCCCCC
Q 003795 490 IYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDIL 569 (795)
Q Consensus 490 ~~~g~~~~~l~~lf~~ar~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVIatTN~~d~L 569 (795)
.+.|.....++.+|+.++...|||+||||||.+...+.....++......+++.|+.+||++....+++||+|||+++.+
T Consensus 127 ~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~l 206 (495)
T TIGR01241 127 MFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVL 206 (495)
T ss_pred HHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhc
Confidence 99999999999999999999999999999999988765433344566678999999999999888899999999999999
Q ss_pred CccccCCCcccceecCCCCCHHHHHHHHHHHHccCCCCChhhHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCccCHH
Q 003795 570 DPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTD 649 (795)
Q Consensus 570 dpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~~~~~d~dl~~LA~~t~G~sgadL~~lv~~A~~~A~~~~~~~It~e 649 (795)
||+++||||||+.|+|+.|+.++|.+|++.+++......+.++..+|..+.|||++||.++|++|+..|.++++..|+.+
T Consensus 207 d~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~~~~~~i~~~ 286 (495)
T TIGR01241 207 DPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADLANLLNEAALLAARKNKTEITMN 286 (495)
T ss_pred CHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHH
Confidence 99999999999999999999999999999999988877888999999999999999999999999999999898899999
Q ss_pred HHHHHHHHHHhcccc-cccccchhhhHHHHHHHHHHHHHHhcCCCCccceEEEecCCCccccceeecccchhhhhccccH
Q 003795 650 DLLQAAQIEERGMLD-RKERSSETWRQVAINEAAMAVVAVNFPDLKNIEFVTIAPRAGRELGYVRMKMDHMKFKEGMLSR 728 (795)
Q Consensus 650 dl~~Al~~~~~~~~~-~~~~~~~~~~~va~hEaGhalva~~l~~~~~i~~vtI~pr~g~~lG~~~~~~~e~~~~~~~~tr 728 (795)
|+..|++....+... ....++.+++++|+||+||||++++++...++.+|||.|| |.++||+.+.+.++ ....|+
T Consensus 287 ~l~~a~~~~~~~~~~~~~~~~~~~~~~~A~hEaGhAlv~~~l~~~~~v~~vsi~pr-g~~~G~~~~~~~~~---~~~~t~ 362 (495)
T TIGR01241 287 DIEEAIDRVIAGPEKKSRVISEKEKKLVAYHEAGHALVGLLLKDADPVHKVTIIPR-GQALGYTQFLPEED---KYLYTK 362 (495)
T ss_pred HHHHHHHHHhcccccccccccHHHHHHHHHHHHhHHHHHHhcCCCCceEEEEEeec-CCccceEEecCccc---cccCCH
Confidence 999999976554322 2334578899999999999999999988899999999999 78999999888764 578999
Q ss_pred HHHHHHHHHHhChHHHHHHHhCCCCcccchhhhHHHHHHHHHHHH-HhcCCCCCCCcccccc
Q 003795 729 QSLLDHITVQLAPRAADELWCGEGQLSTIWAETADNARSAARTFV-LGGLSDKHFGLSNFWV 789 (795)
Q Consensus 729 ~~ll~~I~vlLaGRaAEel~~G~~~vstGa~~Dl~~At~iA~~mV-~~Gm~~~~~g~~~~~~ 789 (795)
.+++++|+|+|||||||+++||+ +|+|+++||++||++|+.|| +|||++.. |+++|..
T Consensus 363 ~~l~~~i~v~LaGraAE~~~~G~--~s~Ga~~Dl~~At~lA~~mv~~~Gm~~~~-g~~~~~~ 421 (495)
T TIGR01241 363 SQLLAQIAVLLGGRAAEEIIFGE--VTTGASNDIKQATNIARAMVTEWGMSDKL-GPVAYGS 421 (495)
T ss_pred HHHHHHHHHHhhHHHHHHHHhcC--CCCCchHHHHHHHHHHHHHHHHhCCCccc-Cceeecc
Confidence 99999999999999999999996 99999999999999999999 99999975 9888754
No 7
>CHL00206 ycf2 Ycf2; Provisional
Probab=100.00 E-value=2.9e-48 Score=472.88 Aligned_cols=309 Identities=19% Similarity=0.227 Sum_probs=259.2
Q ss_pred cccccCcccCCceEEECCCCCchhHHHHHhhhhccccEEEeeccceehhh------------------------------
Q 003795 442 MYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIY------------------------------ 491 (795)
Q Consensus 442 ~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~se~~~~~------------------------------ 491 (795)
...++|+.+|+||||+||||||||.|||+||+++++|++.++++++++.+
T Consensus 1621 ~slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e 1700 (2281)
T CHL00206 1621 FSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTE 1700 (2281)
T ss_pred HHHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccchh
Confidence 34578899999999999999999999999999999999999999988643
Q ss_pred -----------hccc--hhhHHhHHHHHHhcCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhccc---CCC
Q 003795 492 -----------VGVG--ASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE---GRG 555 (795)
Q Consensus 492 -----------~g~~--~~~l~~lf~~ar~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~---~~~ 555 (795)
++.+ ...++.+|+.|+..+||||+|||||+++... ....+++.|+.+|++.. ...
T Consensus 1701 ~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~d---------s~~ltL~qLLneLDg~~~~~s~~ 1771 (2281)
T CHL00206 1701 LLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNE---------SNYLSLGLLVNSLSRDCERCSTR 1771 (2281)
T ss_pred hhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCc---------cceehHHHHHHHhccccccCCCC
Confidence 1112 2237889999999999999999999997541 12346899999999763 356
Q ss_pred cEEEEeccCCCCCCCccccCCCcccceecCCCCCHHHHHHHHHHH--HccCCCCCh-hhHHHHHhhCCCCcHHHHHHHHH
Q 003795 556 NVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVH--ARKKPMADD-VDYLAVASMTDGMVGAELANIVE 632 (795)
Q Consensus 556 ~VlVIatTN~~d~LdpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~--l~~~~~~~d-~dl~~LA~~t~G~sgadL~~lv~ 632 (795)
+|+||||||+|+.|||||+||||||+.|+|+.|+..+|.+++... .++..+..+ +|+..+|+.|.|||||||.++|+
T Consensus 1772 ~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanLvN 1851 (2281)
T CHL00206 1772 NILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALTN 1851 (2281)
T ss_pred CEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHHHH
Confidence 899999999999999999999999999999999999999988754 344444433 57999999999999999999999
Q ss_pred HHHHHHHHcCCCccCHHHHHHHHHHHHhcccccccccchhhhHHHHHHHHHHHHHHhcCCCCccceEEEec-----CCCc
Q 003795 633 VAAINMMRDGRTEITTDDLLQAAQIEERGMLDRKERSSETWRQVAINEAAMAVVAVNFPDLKNIEFVTIAP-----RAGR 707 (795)
Q Consensus 633 ~A~~~A~~~~~~~It~edl~~Al~~~~~~~~~~~~~~~~~~~~va~hEaGhalva~~l~~~~~i~~vtI~p-----r~g~ 707 (795)
+|+..|+++++..|+.+++..|+++...+..... .+..+ +.+++||+||||++.++...++|++|||.+ ++|.
T Consensus 1852 EAaliAirq~ks~Id~~~I~~Al~Rq~~g~~~~~-~~~~~-~~ia~yEiGhAvvq~~L~~~~pv~kISIy~~~~~~r~~~ 1929 (2281)
T CHL00206 1852 EALSISITQKKSIIDTNTIRSALHRQTWDLRSQV-RSVQD-HGILFYQIGRAVAQNVLLSNCPIDPISIYMKKKSCKEGD 1929 (2281)
T ss_pred HHHHHHHHcCCCccCHHHHHHHHHHHHhhhhhcc-cCcch-hhhhhhHHhHHHHHHhccCCCCcceEEEecCCccccCcc
Confidence 9999999999999999999999998876654322 22333 357999999999999999999999999953 2356
Q ss_pred cccceeecccchhhhhccccHHHHHHHHHHHhChHHHHHHHhCCCCcccchhhhHHHHHHHHHHHH-HhcCCCC
Q 003795 708 ELGYVRMKMDHMKFKEGMLSRQSLLDHITVQLAPRAADELWCGEGQLSTIWAETADNARSAARTFV-LGGLSDK 780 (795)
Q Consensus 708 ~lG~~~~~~~e~~~~~~~~tr~~ll~~I~vlLaGRaAEel~~G~~~vstGa~~Dl~~At~iA~~mV-~~Gm~~~ 780 (795)
++||+++.|.+ ..+++.+++.+|++||||||||++||+.+. .|+.|| .+||.+.
T Consensus 1930 ~yl~~wyle~~-----~~mkk~tiL~~Il~cLAGraAedlwf~~~~--------------~~~n~It~yg~vEn 1984 (2281)
T CHL00206 1930 SYLYKWYFELG-----TSMKKLTILLYLLSCSAGSVAQDLWSLPGP--------------DEKNGITSYGLVEN 1984 (2281)
T ss_pred cceeEeecCCc-----ccCCHHHHHHHHHHHhhhhhhhhhccCcch--------------hhhcCcccccchhh
Confidence 67899988764 689999999999999999999999998732 467777 7777776
No 8
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.9e-48 Score=410.97 Aligned_cols=250 Identities=47% Similarity=0.764 Sum_probs=241.8
Q ss_pred ccCccccccCccCchHHHHHHHHHHHh-ccccccccccCcccCCceEEECCCCCchhHHHHHhhhhccccEEEeecccee
Q 003795 410 ERGVDVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFV 488 (795)
Q Consensus 410 ~~~~~~~f~~~~gl~~~~~~l~~lv~~-~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~se~~ 488 (795)
...+++++.+++|+++++.++++++.. +.++++|..+|+.+|+|||||||||||||.||||+|+..+..|+++.+|+++
T Consensus 143 ~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElV 222 (406)
T COG1222 143 EEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELV 222 (406)
T ss_pred ccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHH
Confidence 345789999999999999999999985 6799999999999999999999999999999999999999999999999999
Q ss_pred hhhhccchhhHHhHHHHHHhcCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcccCCCcEEEEeccCCCCC
Q 003795 489 EIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDI 568 (795)
Q Consensus 489 ~~~~g~~~~~l~~lf~~ar~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVIatTN~~d~ 568 (795)
.+|+|.+...++.+|+.|+.++|||+||||||+++..|...+.||+.+...++-+||.+||||...+||-||+|||++|.
T Consensus 223 qKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~ 302 (406)
T COG1222 223 QKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDI 302 (406)
T ss_pred HHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCccc
Confidence 99999999999999999999999999999999999999988889999999999999999999999999999999999999
Q ss_pred CCccccCCCcccceecCCCCCHHHHHHHHHHHHccCCCCChhhHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCccCH
Q 003795 569 LDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITT 648 (795)
Q Consensus 569 LdpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~~~~~d~dl~~LA~~t~G~sgadL~~lv~~A~~~A~~~~~~~It~ 648 (795)
|||||+||||||+.|+||+|+.+.|.+||+.|.++..+.+++|+..||..|+|+|||||.++|.+|...|.|..+..||+
T Consensus 303 LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlkaictEAGm~AiR~~R~~Vt~ 382 (406)
T COG1222 303 LDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKAICTEAGMFAIRERRDEVTM 382 (406)
T ss_pred cChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHHHHHHHHhHHHHHhccCeecH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 003795 649 DDLLQAAQIEE 659 (795)
Q Consensus 649 edl~~Al~~~~ 659 (795)
+||..|++...
T Consensus 383 ~DF~~Av~KV~ 393 (406)
T COG1222 383 EDFLKAVEKVV 393 (406)
T ss_pred HHHHHHHHHHH
Confidence 99999988543
No 9
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-41 Score=383.83 Aligned_cols=249 Identities=42% Similarity=0.730 Sum_probs=233.5
Q ss_pred cCccccccCccCchHHHHHHHHHHHh-ccccccccccCcccCCceEEECCCCCchhHHHHHhhhhccccEEEeeccceeh
Q 003795 411 RGVDVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVE 489 (795)
Q Consensus 411 ~~~~~~f~~~~gl~~~~~~l~~lv~~-~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~se~~~ 489 (795)
.-+++.|++++|+++.+.++++.+.+ +.+++.|.++|+.+|+|||||||||||||++||+||.+.+.+|+.+.+.++.+
T Consensus 427 e~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~s 506 (693)
T KOG0730|consen 427 EMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFS 506 (693)
T ss_pred cCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHH
Confidence 34789999999999999999998886 56889999999999999999999999999999999999999999999999999
Q ss_pred hhhccchhhHHhHHHHHHhcCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcccCCCcEEEEeccCCCCCC
Q 003795 490 IYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDIL 569 (795)
Q Consensus 490 ~~~g~~~~~l~~lf~~ar~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVIatTN~~d~L 569 (795)
+|+|+++..++.+|+.|+..+|||+|+||||++...|++ +++.-.+.++++||.+|||+....+|+||++||+|+.|
T Consensus 507 k~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g---~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~I 583 (693)
T KOG0730|consen 507 KYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGG---SSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMI 583 (693)
T ss_pred HhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCC---CccchHHHHHHHHHHHcccccccCcEEEEeccCChhhc
Confidence 999999999999999999999999999999999999863 33477788999999999999999999999999999999
Q ss_pred CccccCCCcccceecCCCCCHHHHHHHHHHHHccCCCCChhhHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcC--CCccC
Q 003795 570 DPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDG--RTEIT 647 (795)
Q Consensus 570 dpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~~~~~d~dl~~LA~~t~G~sgadL~~lv~~A~~~A~~~~--~~~It 647 (795)
|+||+||||||+.|+||+||.+.|.+||+.++++.++.+++|+..||..|+||||+||.++|++|+..|.++. ...|+
T Consensus 584 D~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel~~lCq~A~~~a~~e~i~a~~i~ 663 (693)
T KOG0730|consen 584 DPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQATEGYSGAEIVAVCQEAALLALRESIEATEIT 663 (693)
T ss_pred CHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHHHhccCChHHHHHHHHHHHHHHHHHhccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999875 35799
Q ss_pred HHHHHHHHHHHHhcc
Q 003795 648 TDDLLQAAQIEERGM 662 (795)
Q Consensus 648 ~edl~~Al~~~~~~~ 662 (795)
..||.+|+...+..+
T Consensus 664 ~~hf~~al~~~r~s~ 678 (693)
T KOG0730|consen 664 WQHFEEALKAVRPSL 678 (693)
T ss_pred HHHHHHHHHhhcccC
Confidence 999999988655443
No 10
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.3e-40 Score=366.10 Aligned_cols=246 Identities=41% Similarity=0.685 Sum_probs=225.7
Q ss_pred CccccccCccCchHHHHHHHHHHHh-ccccccccccCcccCCceEEECCCCCchhHHHHHhhhhccccEEEeeccceehh
Q 003795 412 GVDVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEI 490 (795)
Q Consensus 412 ~~~~~f~~~~gl~~~~~~l~~lv~~-~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~se~~~~ 490 (795)
-+++.|++++++.++..++..++.+ ++.++.|+.+|+..|.||||+||||||||.|||++|++.+..|+.|.+.++.++
T Consensus 505 VPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNk 584 (802)
T KOG0733|consen 505 VPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNK 584 (802)
T ss_pred cCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHH
Confidence 3688999999999999999988775 578899999999999999999999999999999999999999999999999999
Q ss_pred hhccchhhHHhHHHHHHhcCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcccCCCcEEEEeccCCCCCCC
Q 003795 491 YVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILD 570 (795)
Q Consensus 491 ~~g~~~~~l~~lf~~ar~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVIatTN~~d~Ld 570 (795)
|+|+.+..++++|+.|+..+|||||+||+|++.+.|+.. +......++|+||.+|||+..+.+|.||++||+||.||
T Consensus 585 YVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~---~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiID 661 (802)
T KOG0733|consen 585 YVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDE---GSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIID 661 (802)
T ss_pred HhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCC---CchhHHHHHHHHHHHhcccccccceEEEeecCCCcccc
Confidence 999999999999999999999999999999999988653 34445569999999999999999999999999999999
Q ss_pred ccccCCCcccceecCCCCCHHHHHHHHHHHHc--cCCCCChhhHHHHHhhCC--CCcHHHHHHHHHHHHHHHHHcC----
Q 003795 571 PALVRPGRFDRKIFIPKPGLIGRMEILKVHAR--KKPMADDVDYLAVASMTD--GMVGAELANIVEVAAINMMRDG---- 642 (795)
Q Consensus 571 paLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~--~~~~~~d~dl~~LA~~t~--G~sgadL~~lv~~A~~~A~~~~---- 642 (795)
|+++||||||..+++++|+.++|.+||+.+.+ +.++.+++|++.||+.+. ||||+||..||++|...|.++.
T Consensus 662 pAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLvreAsi~AL~~~~~~~ 741 (802)
T KOG0733|consen 662 PAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALVREASILALRESLFEI 741 (802)
T ss_pred hhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999 778999999999999877 9999999999999999887751
Q ss_pred ------------CCccCHHHHHHHHHHHHh
Q 003795 643 ------------RTEITTDDLLQAAQIEER 660 (795)
Q Consensus 643 ------------~~~It~edl~~Al~~~~~ 660 (795)
...+++.||.+|+...+.
T Consensus 742 ~~~~~~~~~~~~~~~~t~~hF~eA~~~i~p 771 (802)
T KOG0733|consen 742 DSSEDDVTVRSSTIIVTYKHFEEAFQRIRP 771 (802)
T ss_pred cccCcccceeeeeeeecHHHHHHHHHhcCC
Confidence 013678899999875543
No 11
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-37 Score=313.86 Aligned_cols=249 Identities=39% Similarity=0.666 Sum_probs=237.1
Q ss_pred ccCccccccCccCchHHHHHHHHHHHh-ccccccccccCcccCCceEEECCCCCchhHHHHHhhhhccccEEEeecccee
Q 003795 410 ERGVDVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFV 488 (795)
Q Consensus 410 ~~~~~~~f~~~~gl~~~~~~l~~lv~~-~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~se~~ 488 (795)
++-++-.+.++.|+++++.++++++.. .+++++|..+|+.-|+|++|+||||+|||.|++++|+...+.|+++++++++
T Consensus 139 eKvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselv 218 (404)
T KOG0728|consen 139 EKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELV 218 (404)
T ss_pred hhCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHH
Confidence 445677788999999999999999985 5789999999999999999999999999999999999999999999999999
Q ss_pred hhhhccchhhHHhHHHHHHhcCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcccCCCcEEEEeccCCCCC
Q 003795 489 EIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDI 568 (795)
Q Consensus 489 ~~~~g~~~~~l~~lf~~ar~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVIatTN~~d~ 568 (795)
..|+|.+...++.+|-.++.++|+|+|+||||+++..|...+++|+++...++-.||.++|+|....|+-||++||+.|.
T Consensus 219 qk~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridi 298 (404)
T KOG0728|consen 219 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDI 298 (404)
T ss_pred HHHhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEecccccc
Confidence 99999999999999999999999999999999999998877777788888899999999999999999999999999999
Q ss_pred CCccccCCCcccceecCCCCCHHHHHHHHHHHHccCCCCChhhHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCccCH
Q 003795 569 LDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITT 648 (795)
Q Consensus 569 LdpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~~~~~d~dl~~LA~~t~G~sgadL~~lv~~A~~~A~~~~~~~It~ 648 (795)
+||+|+||||+|+.|+||+|+.+.|.+|++.|.++.++...+++..+|....|.||+++..+|.+|...|.+..+..+|.
T Consensus 299 ld~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vcteagm~alrerrvhvtq 378 (404)
T KOG0728|consen 299 LDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTEAGMYALRERRVHVTQ 378 (404)
T ss_pred ccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhhhhhhHHHHHHhhccccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 003795 649 DDLLQAAQIE 658 (795)
Q Consensus 649 edl~~Al~~~ 658 (795)
+||+-|+...
T Consensus 379 edfemav~kv 388 (404)
T KOG0728|consen 379 EDFEMAVAKV 388 (404)
T ss_pred HHHHHHHHHH
Confidence 9999998744
No 12
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-37 Score=345.12 Aligned_cols=226 Identities=42% Similarity=0.686 Sum_probs=213.6
Q ss_pred ccccccCccCchHHHHHHHHHHHhccccccccccCcccCCceEEECCCCCchhHHHHHhhhhccccEEEeeccceehhhh
Q 003795 413 VDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYV 492 (795)
Q Consensus 413 ~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~se~~~~~~ 492 (795)
.++.|.+++|+++...++.+++..+.+++.|..+|+.+|+||||+||||||||.||++||++++.||+.|+..++++.+.
T Consensus 185 snv~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvS 264 (802)
T KOG0733|consen 185 SNVSFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVS 264 (802)
T ss_pred CCcchhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcccC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhHHhHHHHHHhcCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcccCC----CcEEEEeccCCCCC
Q 003795 493 GVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGR----GNVITIASTNRPDI 568 (795)
Q Consensus 493 g~~~~~l~~lf~~ar~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~----~~VlVIatTN~~d~ 568 (795)
|..++.++.+|+.|...+|||+||||||++.++|.. .+-+--+.++.+||.+||++... ..|+||+|||+||.
T Consensus 265 GESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~---aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDs 341 (802)
T KOG0733|consen 265 GESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREE---AQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDS 341 (802)
T ss_pred cccHHHHHHHHHHHhccCCeEEEeecccccccchhh---HHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCcc
Confidence 999999999999999999999999999999988743 34455577999999999997644 67999999999999
Q ss_pred CCccccCCCcccceecCCCCCHHHHHHHHHHHHccCCCCChhhHHHHHhhCCCCcHHHHHHHHHHHHHHHHHc
Q 003795 569 LDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRD 641 (795)
Q Consensus 569 LdpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~~~~~d~dl~~LA~~t~G~sgadL~~lv~~A~~~A~~~ 641 (795)
|||+|+|+||||+.|.+..|+..+|.+||+..+++..+..++|+..||..|+||.|+||..||.+|+..|.++
T Consensus 342 lDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~AL~~~Aa~vAikR 414 (802)
T KOG0733|consen 342 LDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLMALCREAAFVAIKR 414 (802)
T ss_pred cCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccchhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998875
No 13
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.8e-37 Score=310.80 Aligned_cols=247 Identities=38% Similarity=0.637 Sum_probs=234.7
Q ss_pred cCccccccCccCchHHHHHHHHHHHh-ccccccccccCcccCCceEEECCCCCchhHHHHHhhhhccccEEEeeccceeh
Q 003795 411 RGVDVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVE 489 (795)
Q Consensus 411 ~~~~~~f~~~~gl~~~~~~l~~lv~~-~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~se~~~ 489 (795)
..+++.+.+++|++-.+.++++++.. +.+..+|+..|+.+|+|+|++||||||||+|+|++|+.....|+++.+++|+.
T Consensus 148 ekpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvq 227 (408)
T KOG0727|consen 148 EKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQ 227 (408)
T ss_pred CCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHH
Confidence 35789999999999999999999985 55778999999999999999999999999999999999999999999999999
Q ss_pred hhhccchhhHHhHHHHHHhcCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcccCCCcEEEEeccCCCCCC
Q 003795 490 IYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDIL 569 (795)
Q Consensus 490 ~~~g~~~~~l~~lf~~ar~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVIatTN~~d~L 569 (795)
+|.|.+...++.+|.-++.++|+|+||||||++..+|.....+.+.+...++-.||.+||+|....||-||++||+.+.+
T Consensus 228 kylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvimatnradtl 307 (408)
T KOG0727|consen 228 KYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMATNRADTL 307 (408)
T ss_pred HHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEEEecCccccc
Confidence 99999999999999999999999999999999999888766677778888999999999999999999999999999999
Q ss_pred CccccCCCcccceecCCCCCHHHHHHHHHHHHccCCCCChhhHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCccCHH
Q 003795 570 DPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTD 649 (795)
Q Consensus 570 dpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~~~~~d~dl~~LA~~t~G~sgadL~~lv~~A~~~A~~~~~~~It~e 649 (795)
||+|+||||+|+.|+||.||..+++-+|.....+..+.+++|+..+..+-+..|++||..+|++|...|.+.++-.|...
T Consensus 308 dpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~~v~rpdkis~adi~aicqeagm~avr~nryvvl~k 387 (408)
T KOG0727|consen 308 DPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVARPDKISGADINAICQEAGMLAVRENRYVVLQK 387 (408)
T ss_pred CHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCHHHHhcCccccchhhHHHHHHHHhHHHHHhcceeeeHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 003795 650 DLLQAAQI 657 (795)
Q Consensus 650 dl~~Al~~ 657 (795)
||++|...
T Consensus 388 d~e~ay~~ 395 (408)
T KOG0727|consen 388 DFEKAYKT 395 (408)
T ss_pred HHHHHHHh
Confidence 99998653
No 14
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6e-37 Score=312.04 Aligned_cols=250 Identities=38% Similarity=0.625 Sum_probs=236.8
Q ss_pred cCccccccCccCchHHHHHHHHHHHh-ccccccccccCcccCCceEEECCCCCchhHHHHHhhhhccccEEEeeccceeh
Q 003795 411 RGVDVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVE 489 (795)
Q Consensus 411 ~~~~~~f~~~~gl~~~~~~l~~lv~~-~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~se~~~ 489 (795)
..+++.+.++.|+.+.+..+++++.. +-+++.|-++|+.+|+|+|++||||||||.+|+++|+..+..|+++-+|+++.
T Consensus 170 ekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigselvq 249 (435)
T KOG0729|consen 170 EKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQ 249 (435)
T ss_pred cCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHH
Confidence 45788899999999999999999985 56889999999999999999999999999999999999999999999999999
Q ss_pred hhhccchhhHHhHHHHHHhcCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcccCCCcEEEEeccCCCCCC
Q 003795 490 IYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDIL 569 (795)
Q Consensus 490 ~~~g~~~~~l~~lf~~ar~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVIatTN~~d~L 569 (795)
.|+|.+...++.+|+.++....||+|+||||++++.|...+..|+.+...++-.|+.++|+|..++|+-|+++||+|+.|
T Consensus 250 kyvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdprgnikvlmatnrpdtl 329 (435)
T KOG0729|consen 250 KYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTL 329 (435)
T ss_pred HHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEeecCCCCCc
Confidence 99999999999999999999999999999999999988777777778888889999999999999999999999999999
Q ss_pred CccccCCCcccceecCCCCCHHHHHHHHHHHHccCCCCChhhHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCccCHH
Q 003795 570 DPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTD 649 (795)
Q Consensus 570 dpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~~~~~d~dl~~LA~~t~G~sgadL~~lv~~A~~~A~~~~~~~It~e 649 (795)
||+|+||||+|+.++|.+|+.+.|..||+.|.+......++-+..+|+.++..+|++|+.+|.+|...|.+..+...|..
T Consensus 330 dpallrpgrldrkvef~lpdlegrt~i~kihaksmsverdir~ellarlcpnstgaeirsvcteagmfairarrk~atek 409 (435)
T KOG0729|consen 330 DPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKVATEK 409 (435)
T ss_pred CHhhcCCcccccceeccCCcccccceeEEEeccccccccchhHHHHHhhCCCCcchHHHHHHHHhhHHHHHHHhhhhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888999999
Q ss_pred HHHHHHHHHHh
Q 003795 650 DLLQAAQIEER 660 (795)
Q Consensus 650 dl~~Al~~~~~ 660 (795)
||..|+....+
T Consensus 410 dfl~av~kvvk 420 (435)
T KOG0729|consen 410 DFLDAVNKVVK 420 (435)
T ss_pred HHHHHHHHHHH
Confidence 99999885443
No 15
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-36 Score=307.03 Aligned_cols=245 Identities=41% Similarity=0.673 Sum_probs=233.4
Q ss_pred CccccccCccCchHHHHHHHHHHH-hccccccccccCcccCCceEEECCCCCchhHHHHHhhhhccccEEEeeccceehh
Q 003795 412 GVDVKFSDVAGLGKIRLELEEIVK-FFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEI 490 (795)
Q Consensus 412 ~~~~~f~~~~gl~~~~~~l~~lv~-~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~se~~~~ 490 (795)
.+.-.+.++.|+++.+.++-+++. .+.+++.|.++|+++|+|+|+|||||||||.+|++.|...+..|..+.+..++.+
T Consensus 165 kPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQM 244 (424)
T KOG0652|consen 165 KPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQM 244 (424)
T ss_pred CCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHhh
Confidence 345668899999999988887665 4678899999999999999999999999999999999999999999999999999
Q ss_pred hhccchhhHHhHHHHHHhcCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcccCCCcEEEEeccCCCCCCC
Q 003795 491 YVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILD 570 (795)
Q Consensus 491 ~~g~~~~~l~~lf~~ar~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVIatTN~~d~Ld 570 (795)
|+|.+.+.++..|.-++..+|+|+||||+|+++.+|..+..+|+.+...++-.||.++|+|.....|-||++||+.+.+|
T Consensus 245 fIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAATNRvDiLD 324 (424)
T KOG0652|consen 245 FIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVDILD 324 (424)
T ss_pred hhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceEEEeecccccccC
Confidence 99999999999999999999999999999999999988888999999999999999999999999999999999999999
Q ss_pred ccccCCCcccceecCCCCCHHHHHHHHHHHHccCCCCChhhHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCccCHHH
Q 003795 571 PALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDD 650 (795)
Q Consensus 571 paLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~~~~~d~dl~~LA~~t~G~sgadL~~lv~~A~~~A~~~~~~~It~ed 650 (795)
|+|+|+||+|+.|+||.|+.+.|..|++.|.++....+++++..||+.|++|+|+++..+|-+|...|.+++...|+.+|
T Consensus 325 PALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcKAVcVEAGMiALRr~atev~heD 404 (424)
T KOG0652|consen 325 PALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCKAVCVEAGMIALRRGATEVTHED 404 (424)
T ss_pred HHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhheeeehhhhHHHHhcccccccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q 003795 651 LLQAAQ 656 (795)
Q Consensus 651 l~~Al~ 656 (795)
|.+++.
T Consensus 405 fmegI~ 410 (424)
T KOG0652|consen 405 FMEGIL 410 (424)
T ss_pred HHHHHH
Confidence 999875
No 16
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-36 Score=311.66 Aligned_cols=249 Identities=38% Similarity=0.665 Sum_probs=232.5
Q ss_pred ccCccccccCccCchHHHHHHHHHHHh-ccccccccccCcccCCceEEECCCCCchhHHHHHhhhhccccEEEeecccee
Q 003795 410 ERGVDVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFV 488 (795)
Q Consensus 410 ~~~~~~~f~~~~gl~~~~~~l~~lv~~-~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~se~~ 488 (795)
++.+.-.+.++.|++.++.++.+.+.. +.+++.|...|+++|+|++|||+||||||.||+++|+.....|.++-++++.
T Consensus 177 eKaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLi 256 (440)
T KOG0726|consen 177 EKAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELI 256 (440)
T ss_pred ccCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHH
Confidence 345667899999999999999998885 6789999999999999999999999999999999999999999999999999
Q ss_pred hhhhccchhhHHhHHHHHHhcCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcccCCCcEEEEeccCCCCC
Q 003795 489 EIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDI 568 (795)
Q Consensus 489 ~~~~g~~~~~l~~lf~~ar~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVIatTN~~d~ 568 (795)
..|.|.+...++++|+-|..++|+|+||||||+++..|....+.|..+...++-.||+++|+|..++.|-||++||..+.
T Consensus 257 QkylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsrgDvKvimATnrie~ 336 (440)
T KOG0726|consen 257 QKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIET 336 (440)
T ss_pred HHHhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccccCCeEEEEecccccc
Confidence 99999999999999999999999999999999999988765444444566778899999999999999999999999999
Q ss_pred CCccccCCCcccceecCCCCCHHHHHHHHHHHHccCCCCChhhHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCccCH
Q 003795 569 LDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITT 648 (795)
Q Consensus 569 LdpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~~~~~d~dl~~LA~~t~G~sgadL~~lv~~A~~~A~~~~~~~It~ 648 (795)
|||+|+||||+|+.|.|+.||...+..||..|.....+..++++..+...-+.+||+||..+|.+|.+.|.|..+-.+++
T Consensus 337 LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnle~li~~kddlSGAdIkAictEaGllAlRerRm~vt~ 416 (440)
T KOG0726|consen 337 LDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGADIKAICTEAGLLALRERRMKVTM 416 (440)
T ss_pred cCHhhcCCCccccccccCCCchhhhceeEEEeecccchhccccHHHHhhcccccccccHHHHHHHHhHHHHHHHHhhccH
Confidence 99999999999999999999999999999999999999999999999998999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 003795 649 DDLLQAAQIE 658 (795)
Q Consensus 649 edl~~Al~~~ 658 (795)
+||..|.+..
T Consensus 417 ~DF~ka~e~V 426 (440)
T KOG0726|consen 417 EDFKKAKEKV 426 (440)
T ss_pred HHHHHHHHHH
Confidence 9999998744
No 17
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-35 Score=336.88 Aligned_cols=244 Identities=38% Similarity=0.694 Sum_probs=218.8
Q ss_pred CccccccCccCchHHHHHHHHHHHh-ccccccccccCcccCCceEEECCCCCchhHHHHHhhhhccccEEEeeccceehh
Q 003795 412 GVDVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEI 490 (795)
Q Consensus 412 ~~~~~f~~~~gl~~~~~~l~~lv~~-~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~se~~~~ 490 (795)
-+++.|+|++|+++++.++.+-+.. +.+++++ ..|++...|||||||||||||.+|||+|.++...|+++.+.++.++
T Consensus 666 IPnV~WdDVGGLeevK~eIldTIqlPL~hpeLf-ssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLNM 744 (953)
T KOG0736|consen 666 IPNVSWDDVGGLEEVKTEILDTIQLPLKHPELF-SSGLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLNM 744 (953)
T ss_pred CCccchhcccCHHHHHHHHHHHhcCcccChhhh-hccccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHHH
Confidence 4679999999999999988887775 4455554 4588888899999999999999999999999999999999999999
Q ss_pred hhccchhhHHhHHHHHHhcCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhccc--CCCcEEEEeccCCCCC
Q 003795 491 YVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE--GRGNVITIASTNRPDI 568 (795)
Q Consensus 491 ~~g~~~~~l~~lf~~ar~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~--~~~~VlVIatTN~~d~ 568 (795)
|+|+.+.++|.+|++||..+|||||+||+|++++.||..++||| ..+.++.+||.+||++. ....|+||+|||+||.
T Consensus 745 YVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGG-VMDRVVSQLLAELDgls~~~s~~VFViGATNRPDL 823 (953)
T KOG0736|consen 745 YVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGG-VMDRVVSQLLAELDGLSDSSSQDVFVIGATNRPDL 823 (953)
T ss_pred HhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccc-cHHHHHHHHHHHhhcccCCCCCceEEEecCCCccc
Confidence 99999999999999999999999999999999999998777766 45678899999999988 4567999999999999
Q ss_pred CCccccCCCcccceecCCCCC-HHHHHHHHHHHHccCCCCChhhHHHHHhhCC-CCcHHHHHHHHHHHHHHHHHcC----
Q 003795 569 LDPALVRPGRFDRKIFIPKPG-LIGRMEILKVHARKKPMADDVDYLAVASMTD-GMVGAELANIVEVAAINMMRDG---- 642 (795)
Q Consensus 569 LdpaLlrpgRFd~~I~~~~Pd-~~eR~~Il~~~l~~~~~~~d~dl~~LA~~t~-G~sgadL~~lv~~A~~~A~~~~---- 642 (795)
|||+|+||||||..+++.+++ .+.+..+++...++..+++++|+..+|..++ .|||||+..+|-.|.+.|+++.
T Consensus 824 LDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiAk~cp~~~TGADlYsLCSdA~l~AikR~i~~i 903 (953)
T KOG0736|consen 824 LDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIAKKCPPNMTGADLYSLCSDAMLAAIKRTIHDI 903 (953)
T ss_pred cChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCHHHHHhhCCcCCchhHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999998875 4568899999999999999999999999876 6999999999999999998751
Q ss_pred -------------CCccCHHHHHHHHHH
Q 003795 643 -------------RTEITTDDLLQAAQI 657 (795)
Q Consensus 643 -------------~~~It~edl~~Al~~ 657 (795)
...|+++||..+++.
T Consensus 904 e~g~~~~~e~~~~~v~V~~eDflks~~~ 931 (953)
T KOG0736|consen 904 ESGTISEEEQESSSVRVTMEDFLKSAKR 931 (953)
T ss_pred hhccccccccCCceEEEEHHHHHHHHHh
Confidence 124899999999763
No 18
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=6.3e-35 Score=326.17 Aligned_cols=250 Identities=37% Similarity=0.597 Sum_probs=229.6
Q ss_pred cCccccccCccCchHHHHHHHHHHH-hccccccccccCcccCCceEEECCCCCchhHHHHHhhhhccccEEEeeccceeh
Q 003795 411 RGVDVKFSDVAGLGKIRLELEEIVK-FFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVE 489 (795)
Q Consensus 411 ~~~~~~f~~~~gl~~~~~~l~~lv~-~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~se~~~ 489 (795)
..+++.|.+++|++..+.++++.+. .+.++..|..+|+..|+|++|+||||||||++++++|++++.+++.+.++++..
T Consensus 138 ~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~ 217 (398)
T PTZ00454 138 EKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQ 217 (398)
T ss_pred CCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHH
Confidence 4578999999999999999999887 467888999999999999999999999999999999999999999999999999
Q ss_pred hhhccchhhHHhHHHHHHhcCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcccCCCcEEEEeccCCCCCC
Q 003795 490 IYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDIL 569 (795)
Q Consensus 490 ~~~g~~~~~l~~lf~~ar~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVIatTN~~d~L 569 (795)
.|+|.+...++.+|..++...|+|+||||+|.++..+.....+.+......+..|+..++++....+++||++||+++.+
T Consensus 218 k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~L 297 (398)
T PTZ00454 218 KYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTL 297 (398)
T ss_pred HhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhC
Confidence 99999988999999999999999999999999987764333333445667889999999998888899999999999999
Q ss_pred CccccCCCcccceecCCCCCHHHHHHHHHHHHccCCCCChhhHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCccCHH
Q 003795 570 DPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTD 649 (795)
Q Consensus 570 dpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~~~~~d~dl~~LA~~t~G~sgadL~~lv~~A~~~A~~~~~~~It~e 649 (795)
||+++||||||+.|+|+.|+.++|..||+.++.+..+..++++..++..|.||||+||.++|++|...|.++++..|+.+
T Consensus 298 DpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r~~~~~i~~~ 377 (398)
T PTZ00454 298 DPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAAICQEAGMQAVRKNRYVILPK 377 (398)
T ss_pred CHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCCCccCHH
Confidence 99999999999999999999999999999999999888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 003795 650 DLLQAAQIEER 660 (795)
Q Consensus 650 dl~~Al~~~~~ 660 (795)
||..|+.....
T Consensus 378 df~~A~~~v~~ 388 (398)
T PTZ00454 378 DFEKGYKTVVR 388 (398)
T ss_pred HHHHHHHHHHh
Confidence 99999886543
No 19
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-34 Score=307.58 Aligned_cols=245 Identities=36% Similarity=0.550 Sum_probs=215.3
Q ss_pred cccCccccccCccCchHHHHHHHHHHHhc-cccccccccCcccCCceEEECCCCCchhHHHHHhhhhccccEEEeeccce
Q 003795 409 LERGVDVKFSDVAGLGKIRLELEEIVKFF-THGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQF 487 (795)
Q Consensus 409 ~~~~~~~~f~~~~gl~~~~~~l~~lv~~~-~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~se~ 487 (795)
....+.+.|+++.|+++++.-+++++... -.|+.|+ -..++-+|+|++||||||||.|||++|.+++..|+.|+.+.+
T Consensus 203 l~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~-GirrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstl 281 (491)
T KOG0738|consen 203 LQRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFK-GIRRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTL 281 (491)
T ss_pred hccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHh-hcccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhh
Confidence 34567899999999999999999988743 3344443 233445899999999999999999999999999999999999
Q ss_pred ehhhhccchhhHHhHHHHHHhcCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcccCC-Cc---EEEEecc
Q 003795 488 VEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGR-GN---VITIAST 563 (795)
Q Consensus 488 ~~~~~g~~~~~l~~lf~~ar~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~-~~---VlVIatT 563 (795)
.++|-|..++.++-+|+.|+..+|++|||||||+++..|+.. +..+-.+.+-+.||.+|||.... .+ |+|+++|
T Consensus 282 tSKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s--~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAAT 359 (491)
T KOG0738|consen 282 TSKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGS--SEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAAT 359 (491)
T ss_pred hhhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCc--cchhHHHHHHHHHHHHhhccccccccceeEEEEecc
Confidence 999999999999999999999999999999999999988743 56677788999999999997643 23 7888999
Q ss_pred CCCCCCCccccCCCcccceecCCCCCHHHHHHHHHHHHccCCCCChhhHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcCC
Q 003795 564 NRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGR 643 (795)
Q Consensus 564 N~~d~LdpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~~~~~d~dl~~LA~~t~G~sgadL~~lv~~A~~~A~~~~~ 643 (795)
|.|+.||.+|+| ||...|+||+|+.+.|..+++..++.....+++++..|+..++||||+||.++|++|..++.|+--
T Consensus 360 N~PWdiDEAlrR--RlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaDI~nvCreAsm~~mRR~i 437 (491)
T KOG0738|consen 360 NFPWDIDEALRR--RLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYSGADITNVCREASMMAMRRKI 437 (491)
T ss_pred CCCcchHHHHHH--HHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHH
Confidence 999999999999 999999999999999999999999999999999999999999999999999999999999988521
Q ss_pred -----------------CccCHHHHHHHHHHH
Q 003795 644 -----------------TEITTDDLLQAAQIE 658 (795)
Q Consensus 644 -----------------~~It~edl~~Al~~~ 658 (795)
..|+..||..|+...
T Consensus 438 ~g~~~~ei~~lakE~~~~pv~~~Dfe~Al~~v 469 (491)
T KOG0738|consen 438 AGLTPREIRQLAKEEPKMPVTNEDFEEALRKV 469 (491)
T ss_pred hcCCcHHhhhhhhhccccccchhhHHHHHHHc
Confidence 237777888877644
No 20
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=100.00 E-value=1.2e-33 Score=316.57 Aligned_cols=250 Identities=46% Similarity=0.742 Sum_probs=229.3
Q ss_pred cCccccccCccCchHHHHHHHHHHHh-ccccccccccCcccCCceEEECCCCCchhHHHHHhhhhccccEEEeeccceeh
Q 003795 411 RGVDVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVE 489 (795)
Q Consensus 411 ~~~~~~f~~~~gl~~~~~~l~~lv~~-~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~se~~~ 489 (795)
..+.+.|+++.|+++.+.++.+++.. +.++..+..+|+..|+|+||+||||||||++|+++|++++.+++.++++++..
T Consensus 124 ~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~ 203 (389)
T PRK03992 124 ESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQ 203 (389)
T ss_pred CCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhH
Confidence 34678899999999999999998865 66778899999999999999999999999999999999999999999999999
Q ss_pred hhhccchhhHHhHHHHHHhcCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcccCCCcEEEEeccCCCCCC
Q 003795 490 IYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDIL 569 (795)
Q Consensus 490 ~~~g~~~~~l~~lf~~ar~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVIatTN~~d~L 569 (795)
.|+|.....++.+|+.++...|+|+||||+|.++..+.....++.......+..++..++++....++.||+|||+++.+
T Consensus 204 ~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~l 283 (389)
T PRK03992 204 KFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDIL 283 (389)
T ss_pred hhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhhC
Confidence 99999988899999999999999999999999988776554455556667888899999988888899999999999999
Q ss_pred CccccCCCcccceecCCCCCHHHHHHHHHHHHccCCCCChhhHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCccCHH
Q 003795 570 DPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTD 649 (795)
Q Consensus 570 dpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~~~~~d~dl~~LA~~t~G~sgadL~~lv~~A~~~A~~~~~~~It~e 649 (795)
|++++||||||+.|+|++|+.++|.+||+.++++..+..++++..+|..|.||+|+||..+|++|...|.+++...|+.+
T Consensus 284 d~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~~~~~~i~~~ 363 (389)
T PRK03992 284 DPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAICTEAGMFAIRDDRTEVTME 363 (389)
T ss_pred CHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCCCCcCHH
Confidence 99999999999999999999999999999999998888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 003795 650 DLLQAAQIEER 660 (795)
Q Consensus 650 dl~~Al~~~~~ 660 (795)
||.+|+.....
T Consensus 364 d~~~A~~~~~~ 374 (389)
T PRK03992 364 DFLKAIEKVMG 374 (389)
T ss_pred HHHHHHHHHhc
Confidence 99999986543
No 21
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=100.00 E-value=1.4e-33 Score=317.44 Aligned_cols=248 Identities=40% Similarity=0.675 Sum_probs=227.6
Q ss_pred cCccccccCccCchHHHHHHHHHHHh-ccccccccccCcccCCceEEECCCCCchhHHHHHhhhhccccEEEeeccceeh
Q 003795 411 RGVDVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVE 489 (795)
Q Consensus 411 ~~~~~~f~~~~gl~~~~~~l~~lv~~-~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~se~~~ 489 (795)
..+...|.++.|++..+..+.+++.. +.++..|..+|+..|.|++|+||||||||++++++|++++.+++.+..+++..
T Consensus 176 ~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~ 255 (438)
T PTZ00361 176 KAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQ 255 (438)
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhh
Confidence 44668899999999999999999874 67788999999999999999999999999999999999999999999999999
Q ss_pred hhhccchhhHHhHHHHHHhcCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcccCCCcEEEEeccCCCCCC
Q 003795 490 IYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDIL 569 (795)
Q Consensus 490 ~~~g~~~~~l~~lf~~ar~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVIatTN~~d~L 569 (795)
.|.|.+...++.+|..++...|+|+||||||.++..+.....++......++..++..++++....++.||++||+++.+
T Consensus 256 k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~L 335 (438)
T PTZ00361 256 KYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESL 335 (438)
T ss_pred hhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHh
Confidence 99999988899999999999999999999999987765433344445566788899999998888899999999999999
Q ss_pred CccccCCCcccceecCCCCCHHHHHHHHHHHHccCCCCChhhHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCccCHH
Q 003795 570 DPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTD 649 (795)
Q Consensus 570 dpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~~~~~d~dl~~LA~~t~G~sgadL~~lv~~A~~~A~~~~~~~It~e 649 (795)
|++++||||||+.|+|++|+.++|.+||+.++.+..+..++++..++..+.|+||+||.++|++|+..|.++++..|+.+
T Consensus 336 DpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI~~i~~eA~~~Alr~~r~~Vt~~ 415 (438)
T PTZ00361 336 DPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKAICTEAGLLALRERRMKVTQA 415 (438)
T ss_pred hHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcCCccCHH
Confidence 99999999999999999999999999999999998888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 003795 650 DLLQAAQIE 658 (795)
Q Consensus 650 dl~~Al~~~ 658 (795)
||..|+...
T Consensus 416 D~~~A~~~v 424 (438)
T PTZ00361 416 DFRKAKEKV 424 (438)
T ss_pred HHHHHHHHH
Confidence 999998854
No 22
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-33 Score=318.98 Aligned_cols=456 Identities=21% Similarity=0.285 Sum_probs=327.4
Q ss_pred ccchhhhcccccccceeecccCCccccccccceEEeecCcceeeeccCCcccc-hhhhhcccccccccccccccCCCCC-
Q 003795 124 IAYTEIFSLKDEGKLKHVIKSPSGSLRQKAEPVLVVLEDSRVLRTVLPSLDSN-RKFWESWDELKIDSLCVNAYTPPLK- 201 (795)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~- 201 (795)
...+|||+++++++|+|++|+|+|++|.++|++ .|..+-++..+ ..|.+..+.+.- ++.+
T Consensus 63 p~~~dly~vGt~a~I~q~~~lpdg~~kvlveg~---------~R~~I~~~~~~~~~~~a~~~~i~~---------~~~~~ 124 (782)
T COG0466 63 PTEDDLYEVGTLAKILQILKLPDGTVKVLVEGL---------QRVRISKLSDEEEFFEAEIELLPD---------EPIDE 124 (782)
T ss_pred CChhhhhhcchheeeeeeeeCCCCcEEEEEEee---------eeEEEEeeccCCCceEEEEEecCC---------Ccccc
Confidence 344599999999999999999999999999999 99999999987 466666555543 2333
Q ss_pred CCCCCC----------cccccccccCcccccccCCCchhhHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHHHHHHH
Q 003795 202 KPEVPN----------PYLGFLWRVPASMLSTFRPKKESKRAAEIRRAREELKRQRKEELEKMREESEMMEKAMDMQKKE 271 (795)
Q Consensus 202 ~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~k~eld~~~~~~~~le~e~~~l~~e 271 (795)
..++.. .|+...+++|.+.+..+..++.|.+|+|++|+++.++.+.+|++.+......+|+..+..+..|
T Consensus 125 ~~~~~al~~~i~~~~~~~~~l~~~~~~e~l~~~~~i~~~~klad~iaa~l~~~~~~kQ~iLe~~~v~~Rlek~l~~l~~e 204 (782)
T COG0466 125 EREIEALVRSILSEFEEYAKLNKKIPPEELQSLNSIDDPGKLADTIAAHLPLKLEEKQEILETLDVKERLEKLLDLLEKE 204 (782)
T ss_pred hhHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHhcccchHHHHHHHHHhCCCCHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 334443 7888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccceeeeechhhHHHHHHHHHHHHHHHHHHHHHHH
Q 003795 272 EERRRKKEIRLQKYEESLQDARDNYRYMANVWENLAKDSTVATGLGIVFFVIFYRTVVLNYRRQKKDYEDRLKIEKAERE 351 (795)
Q Consensus 272 ~~~~~~~~~rl~~l~~el~~l~~~~~~l~~~w~~ek~~~~~i~~l~~~~~l~~Ykgny~~y~~~~e~~e~~~~~ek~~e~ 351 (795)
.+.+..+++...++++++++.|++| -|++|-..-++.+..-.+- +.+.+.|.+.++. ...
T Consensus 205 i~~~~~ek~I~~kVk~~meK~QREy-yL~EQlKaIqkELG~~~d~---------~~e~~~~~~kie~----------~~~ 264 (782)
T COG0466 205 IDLLQLEKRIRKKVKEQMEKSQREY-YLREQLKAIQKELGEDDDD---------KDEVEELREKIEK----------LKL 264 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCCccc---------hhHHHHHHHHHhh----------cCC
Confidence 9999999889999999999999999 6777766555443332222 2223333332220 001
Q ss_pred HHHHHHHHHHHHhhhhccchhhhhhhhhcCchHHHhhchhh-----hHHHHHHHhcCCCCcccccC------ccccccCc
Q 003795 352 ERKKLRQLERELEGLEGADDEIEQGEAEQNPHLKMAMQFMK-----SGARVRRAYGKGLPQYLERG------VDVKFSDV 420 (795)
Q Consensus 352 ~~~ei~~Lekele~~~~~~~~~~~~~~~~~~~~k~~v~~~~-----~~~~vsr~tgipv~~~~~~~------~~~~f~~~ 420 (795)
-.+..+..++|+.+++. +.++. +..-+.+.+..||....... ..+.-.++
T Consensus 265 p~evk~k~~~El~kL~~-------------------m~~~SaE~~ViRnYlDwll~lPW~~~sk~~~Dl~~a~~iLd~dH 325 (782)
T COG0466 265 PKEAKEKAEKELKKLET-------------------MSPMSAEATVIRNYLDWLLDLPWGKRSKDKLDLKKAEKILDKDH 325 (782)
T ss_pred CHHHHHHHHHHHHHHhc-------------------CCCCCchHHHHHHHHHHHHhCCCccccchhhhHHHHHHHhcccc
Confidence 11122233444444331 11112 22344556678887665543 23445779
Q ss_pred cCchHHHHHHHHHHHhccccccccccCcccCCceEEECCCCCchhHHHHHhhhhccccEEEeeccceehh---------h
Q 003795 421 AGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEI---------Y 491 (795)
Q Consensus 421 ~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~se~~~~---------~ 491 (795)
.|+++++.++-+..... .+.......+ +||+||||+|||+|+++||..++..|++++.+...+. |
T Consensus 326 YGLekVKeRIlEyLAV~---~l~~~~kGpI---LcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHRRTY 399 (782)
T COG0466 326 YGLEKVKERILEYLAVQ---KLTKKLKGPI---LCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHRRTY 399 (782)
T ss_pred cCchhHHHHHHHHHHHH---HHhccCCCcE---EEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccccccc
Confidence 99999997766655432 2222222222 8999999999999999999999999999999887654 9
Q ss_pred hccchhhHHhHHHHHHhcCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcc-------------cCCCcEE
Q 003795 492 VGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGF-------------EGRGNVI 558 (795)
Q Consensus 492 ~g~~~~~l~~lf~~ar~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~-------------~~~~~Vl 558 (795)
+|..++++-+-...+...+| +++|||||+++.+..+. -...||..+|-- .+-++|+
T Consensus 400 IGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss~rGD----------PaSALLEVLDPEQN~~F~DhYLev~yDLS~Vm 468 (782)
T COG0466 400 IGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGSSFRGD----------PASALLEVLDPEQNNTFSDHYLEVPYDLSKVM 468 (782)
T ss_pred cccCChHHHHHHHHhCCcCC-eEEeechhhccCCCCCC----------hHHHHHhhcCHhhcCchhhccccCccchhheE
Confidence 99999999888888988999 89999999998764433 234455555421 2347899
Q ss_pred EEeccCCCCCCCccccCCCcccceecCCCCCHHHHHHHHHHHHcc-----CCCC------ChhhHHHHHh-hCC--CC--
Q 003795 559 TIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARK-----KPMA------DDVDYLAVAS-MTD--GM-- 622 (795)
Q Consensus 559 VIatTN~~d~LdpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~-----~~~~------~d~dl~~LA~-~t~--G~-- 622 (795)
||+|+|..+.||.+|+. |+. +|.+.-++..+..+|.+.|+=. ..+. .+..+..+.+ +|. |.
T Consensus 469 FiaTANsl~tIP~PLlD--RME-iI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~~el~i~d~ai~~iI~~YTREAGVR~ 545 (782)
T COG0466 469 FIATANSLDTIPAPLLD--RME-VIRLSGYTEDEKLEIAKRHLIPKQLKEHGLKKGELTITDEAIKDIIRYYTREAGVRN 545 (782)
T ss_pred EEeecCccccCChHHhc--cee-eeeecCCChHHHHHHHHHhcchHHHHHcCCCccceeecHHHHHHHHHHHhHhhhhhH
Confidence 99999999999999999 987 9999999999999999988732 2222 1112233332 222 21
Q ss_pred cHHHHHHHHHHHHHHHHHcCCC---ccCHHHHHHHHH
Q 003795 623 VGAELANIVEVAAINMMRDGRT---EITTDDLLQAAQ 656 (795)
Q Consensus 623 sgadL~~lv~~A~~~A~~~~~~---~It~edl~~Al~ 656 (795)
--+.|..+|+.++..-...... .|+..++..-+.
T Consensus 546 LeR~i~ki~RK~~~~i~~~~~k~~~~i~~~~l~~yLG 582 (782)
T COG0466 546 LEREIAKICRKAAKKILLKKEKSIVKIDEKNLKKYLG 582 (782)
T ss_pred HHHHHHHHHHHHHHHHHhcCcccceeeCHHHHHHHhC
Confidence 1256777777776655443322 366666666554
No 23
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=4.6e-34 Score=290.63 Aligned_cols=240 Identities=35% Similarity=0.591 Sum_probs=219.5
Q ss_pred ccccccCccCchHHHHHHHHHHHhccccccccccCcccCCceEEECCCCCchhHHHHHhhhhccccEEEeeccceehhhh
Q 003795 413 VDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYV 492 (795)
Q Consensus 413 ~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~se~~~~~~ 492 (795)
.++.|+++.|.++.+..++-+..++.+++.|.. -.|++|||+||||||||++||+||++...|++.+...++...|+
T Consensus 116 ~~it~ddViGqEeAK~kcrli~~yLenPe~Fg~---WAPknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehV 192 (368)
T COG1223 116 SDITLDDVIGQEEAKRKCRLIMEYLENPERFGD---WAPKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHV 192 (368)
T ss_pred ccccHhhhhchHHHHHHHHHHHHHhhChHHhcc---cCcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHHh
Confidence 578899999999999999999999999977654 45788999999999999999999999999999999999999999
Q ss_pred ccchhhHHhHHHHHHhcCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcccCCCcEEEEeccCCCCCCCcc
Q 003795 493 GVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPA 572 (795)
Q Consensus 493 g~~~~~l~~lf~~ar~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVIatTN~~d~Ldpa 572 (795)
|.+...++.+|+.|+..+|||+||||+|+++-+|....-.| ....++|.||.+||++..+.+|+.|++||.++.|||+
T Consensus 193 Gdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRG--DVsEiVNALLTelDgi~eneGVvtIaaTN~p~~LD~a 270 (368)
T COG1223 193 GDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRG--DVSEIVNALLTELDGIKENEGVVTIAATNRPELLDPA 270 (368)
T ss_pred hhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcc--cHHHHHHHHHHhccCcccCCceEEEeecCChhhcCHH
Confidence 99999999999999999999999999999987764322111 2335899999999999999999999999999999999
Q ss_pred ccCCCcccceecCCCCCHHHHHHHHHHHHccCCCCChhhHHHHHhhCCCCcHHHHH-HHHHHHHHHHHHcCCCccCHHHH
Q 003795 573 LVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELA-NIVEVAAINMMRDGRTEITTDDL 651 (795)
Q Consensus 573 LlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~~~~~d~dl~~LA~~t~G~sgadL~-~lv~~A~~~A~~~~~~~It~edl 651 (795)
+++ ||...|+|.+|+.++|..|++.++++.++.-+.++..++..|.||||+||. .++..|...|...++..|+.+|+
T Consensus 271 iRs--RFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdikekvlK~aLh~Ai~ed~e~v~~edi 348 (368)
T COG1223 271 IRS--RFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIKEKVLKTALHRAIAEDREKVEREDI 348 (368)
T ss_pred HHh--hhhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhHHHHHHHHHHHHHHHhchhhhhHHHH
Confidence 999 999999999999999999999999999999999999999999999999996 67888999999999999999999
Q ss_pred HHHHHHHH
Q 003795 652 LQAAQIEE 659 (795)
Q Consensus 652 ~~Al~~~~ 659 (795)
..|+...+
T Consensus 349 e~al~k~r 356 (368)
T COG1223 349 EKALKKER 356 (368)
T ss_pred HHHHHhhc
Confidence 99998543
No 24
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=3.3e-32 Score=310.52 Aligned_cols=239 Identities=28% Similarity=0.421 Sum_probs=208.0
Q ss_pred ccccccCccCchHHHHHHHHHHHhccccccccccCcccCCceEEECCCCCchhHHHHHhhhhccccEEEeeccceehhhh
Q 003795 413 VDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYV 492 (795)
Q Consensus 413 ~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~se~~~~~~ 492 (795)
....|.+++|++..+..+......+. ....+.|+..|+|+||+||||||||++|++||++++.+++.++++.+...|+
T Consensus 223 ~~~~~~dvgGl~~lK~~l~~~~~~~~--~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~v 300 (489)
T CHL00195 223 VNEKISDIGGLDNLKDWLKKRSTSFS--KQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGIV 300 (489)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHhh--HHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhccccc
Confidence 45679999999999988887665543 2345678999999999999999999999999999999999999999999999
Q ss_pred ccchhhHHhHHHHHHhcCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcccCCCcEEEEeccCCCCCCCcc
Q 003795 493 GVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPA 572 (795)
Q Consensus 493 g~~~~~l~~lf~~ar~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVIatTN~~d~Ldpa 572 (795)
|.+...++.+|+.++...|||+||||||.+...+... +.+.....+++.|+..|+. ...+|+||+|||+++.|||+
T Consensus 301 Gese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~--~d~~~~~rvl~~lL~~l~~--~~~~V~vIaTTN~~~~Ld~a 376 (489)
T CHL00195 301 GESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESK--GDSGTTNRVLATFITWLSE--KKSPVFVVATANNIDLLPLE 376 (489)
T ss_pred ChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCC--CCchHHHHHHHHHHHHHhc--CCCceEEEEecCChhhCCHH
Confidence 9999999999999999999999999999987653322 2233456688888888883 45689999999999999999
Q ss_pred ccCCCcccceecCCCCCHHHHHHHHHHHHccCCC--CChhhHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCccCHHH
Q 003795 573 LVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPM--ADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDD 650 (795)
Q Consensus 573 LlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~~~--~~d~dl~~LA~~t~G~sgadL~~lv~~A~~~A~~~~~~~It~ed 650 (795)
++|+||||+.++|+.|+.++|.+||+.|+.+... ..+.++..+|..|.||||+||.++|++|...|...++ .++.+|
T Consensus 377 llR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~~A~~~~~-~lt~~d 455 (489)
T CHL00195 377 ILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYIAFYEKR-EFTTDD 455 (489)
T ss_pred HhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcCC-CcCHHH
Confidence 9999999999999999999999999999988643 2478899999999999999999999999998887664 599999
Q ss_pred HHHHHHHH
Q 003795 651 LLQAAQIE 658 (795)
Q Consensus 651 l~~Al~~~ 658 (795)
+..|+...
T Consensus 456 l~~a~~~~ 463 (489)
T CHL00195 456 ILLALKQF 463 (489)
T ss_pred HHHHHHhc
Confidence 99998744
No 25
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-32 Score=308.48 Aligned_cols=227 Identities=36% Similarity=0.655 Sum_probs=211.1
Q ss_pred CccccccCccCchHHHHHHHHHHHhcc-ccccccccCcccCCceEEECCCCCchhHHHHHhhhhccccEEEeeccceehh
Q 003795 412 GVDVKFSDVAGLGKIRLELEEIVKFFT-HGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEI 490 (795)
Q Consensus 412 ~~~~~f~~~~gl~~~~~~l~~lv~~~~-~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~se~~~~ 490 (795)
...+.+.+++|+.+++.-+++++.+.. -+.+|....++.+.||||+||||||||.||.++|...+..|+.+.+.++.++
T Consensus 661 ~tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~K 740 (952)
T KOG0735|consen 661 STGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSK 740 (952)
T ss_pred cCCCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHH
Confidence 345899999999999999999998753 5778999999999999999999999999999999999999999999999999
Q ss_pred hhccchhhHHhHHHHHHhcCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcccCCCcEEEEeccCCCCCCC
Q 003795 491 YVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILD 570 (795)
Q Consensus 491 ~~g~~~~~l~~lf~~ar~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVIatTN~~d~Ld 570 (795)
|+|..+.+++.+|..|+...|||+|+||+|+++++||-.+ . ...+.++|+||.+|||...-.+|.|+++|.+||.||
T Consensus 741 yIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDs--T-GVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliD 817 (952)
T KOG0735|consen 741 YIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDS--T-GVTDRVVNQLLTELDGAEGLDGVYILAATSRPDLID 817 (952)
T ss_pred HhcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCC--C-CchHHHHHHHHHhhccccccceEEEEEecCCccccC
Confidence 9999999999999999999999999999999999987532 2 234568999999999999999999999999999999
Q ss_pred ccccCCCcccceecCCCCCHHHHHHHHHHHHccCCCCChhhHHHHHhhCCCCcHHHHHHHHHHHHHHHHHc
Q 003795 571 PALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRD 641 (795)
Q Consensus 571 paLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~~~~~d~dl~~LA~~t~G~sgadL~~lv~~A~~~A~~~ 641 (795)
|||+||||+|+.++.+.|+..+|.+|++..........++|+.-+|..|+||||+||..++..|.+.|.++
T Consensus 818 pALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g~tgADlq~ll~~A~l~avh~ 888 (952)
T KOG0735|consen 818 PALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLAQKTDGFTGADLQSLLYNAQLAAVHE 888 (952)
T ss_pred HhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHhhhcCCCchhhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999899999999999999999999999999999998877653
No 26
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=5.1e-32 Score=326.19 Aligned_cols=245 Identities=42% Similarity=0.763 Sum_probs=222.7
Q ss_pred ccccccCccCchHHHHHHHHHHHh-ccccccccccCcccCCceEEECCCCCchhHHHHHhhhhccccEEEeeccceehhh
Q 003795 413 VDVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIY 491 (795)
Q Consensus 413 ~~~~f~~~~gl~~~~~~l~~lv~~-~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~se~~~~~ 491 (795)
+.+.|.++.|++..+..+.+.+.+ +..+..+..+|+..|+|+||+||||||||++|+++|++++.+|+.++++++...|
T Consensus 448 ~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~ 527 (733)
T TIGR01243 448 PNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKW 527 (733)
T ss_pred cccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhcc
Confidence 467899999999999999998874 6677888999999999999999999999999999999999999999999999999
Q ss_pred hccchhhHHhHHHHHHhcCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcccCCCcEEEEeccCCCCCCCc
Q 003795 492 VGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDP 571 (795)
Q Consensus 492 ~g~~~~~l~~lf~~ar~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVIatTN~~d~Ldp 571 (795)
+|+.+..++.+|+.++...|||+||||+|.+++.++.. .++...+.++++|+..||++....+++||+|||+++.|||
T Consensus 528 vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~--~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~ 605 (733)
T TIGR01243 528 VGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGAR--FDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDP 605 (733)
T ss_pred cCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCC--CCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCH
Confidence 99999999999999999999999999999998876532 2233456789999999999888889999999999999999
Q ss_pred cccCCCcccceecCCCCCHHHHHHHHHHHHccCCCCChhhHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcC---------
Q 003795 572 ALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDG--------- 642 (795)
Q Consensus 572 aLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~~~~~d~dl~~LA~~t~G~sgadL~~lv~~A~~~A~~~~--------- 642 (795)
+++||||||+.|+|++|+.++|.+||+.++++.++.+++++..+|..|.||||+||.++|++|+..|.++.
T Consensus 606 allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~~~~~A~~~a~~~~~~~~~~~~~ 685 (733)
T TIGR01243 606 ALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAEMTEGYTGADIEAVCREAAMAALRESIGSPAKEKL 685 (733)
T ss_pred hhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhccchhh
Confidence 99999999999999999999999999999999998899999999999999999999999999999887742
Q ss_pred ---------CCccCHHHHHHHHHHHH
Q 003795 643 ---------RTEITTDDLLQAAQIEE 659 (795)
Q Consensus 643 ---------~~~It~edl~~Al~~~~ 659 (795)
...|+.+||..|+....
T Consensus 686 ~~~~~~~~~~~~i~~~~f~~al~~~~ 711 (733)
T TIGR01243 686 EVGEEEFLKDLKVEMRHFLEALKKVK 711 (733)
T ss_pred hcccccccccCcccHHHHHHHHHHcC
Confidence 12689999999987543
No 27
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=100.00 E-value=9.3e-32 Score=299.29 Aligned_cols=247 Identities=48% Similarity=0.780 Sum_probs=225.1
Q ss_pred cCccccccCccCchHHHHHHHHHHHh-ccccccccccCcccCCceEEECCCCCchhHHHHHhhhhccccEEEeeccceeh
Q 003795 411 RGVDVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVE 489 (795)
Q Consensus 411 ~~~~~~f~~~~gl~~~~~~l~~lv~~-~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~se~~~ 489 (795)
..+.+.++++.|+++.+..+.+.+.. +.++..+..+|+..|+|++|+||||||||++++++|+.++.+++.+.++++..
T Consensus 115 ~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~ 194 (364)
T TIGR01242 115 ERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVR 194 (364)
T ss_pred cCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHH
Confidence 45678899999999999999998864 56778889999999999999999999999999999999999999999988888
Q ss_pred hhhccchhhHHhHHHHHHhcCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcccCCCcEEEEeccCCCCCC
Q 003795 490 IYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDIL 569 (795)
Q Consensus 490 ~~~g~~~~~l~~lf~~ar~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVIatTN~~d~L 569 (795)
.|+|.....++.+|+.++...|+|+||||+|.++..+.....+++......+..++..++++....++.||+|||.++.+
T Consensus 195 ~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~l 274 (364)
T TIGR01242 195 KYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDIL 274 (364)
T ss_pred HhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhC
Confidence 89998888889999999999999999999999987765544455566677888999999988777899999999999999
Q ss_pred CccccCCCcccceecCCCCCHHHHHHHHHHHHccCCCCChhhHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCccCHH
Q 003795 570 DPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTD 649 (795)
Q Consensus 570 dpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~~~~~d~dl~~LA~~t~G~sgadL~~lv~~A~~~A~~~~~~~It~e 649 (795)
|+++++|||||+.|+|+.|+.++|.+|++.++....+..++++..++..+.||+|+||.++|++|...|.++++..|+.+
T Consensus 275 d~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~sg~dl~~l~~~A~~~a~~~~~~~i~~~ 354 (364)
T TIGR01242 275 DPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADLKAICTEAGMFAIREERDYVTMD 354 (364)
T ss_pred ChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCccCHH
Confidence 99999999999999999999999999999999888888888999999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 003795 650 DLLQAAQI 657 (795)
Q Consensus 650 dl~~Al~~ 657 (795)
||..|+..
T Consensus 355 d~~~a~~~ 362 (364)
T TIGR01242 355 DFIKAVEK 362 (364)
T ss_pred HHHHHHHH
Confidence 99999864
No 28
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=6.2e-32 Score=312.24 Aligned_cols=244 Identities=44% Similarity=0.747 Sum_probs=223.0
Q ss_pred cCccccccCccCchHHHHHHHHHHHhc-cccccccccCcccCCceEEECCCCCchhHHHHHhhhhccccEEEeeccceeh
Q 003795 411 RGVDVKFSDVAGLGKIRLELEEIVKFF-THGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVE 489 (795)
Q Consensus 411 ~~~~~~f~~~~gl~~~~~~l~~lv~~~-~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~se~~~ 489 (795)
......|.++.|++..+..+.+++... ..+..+...++..++|+||+||||||||+||+++|.+++.+|+.++++++.+
T Consensus 235 ~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~s 314 (494)
T COG0464 235 EDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLS 314 (494)
T ss_pred CCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhc
Confidence 356788999999999999999998864 4566777789999999999999999999999999999999999999999999
Q ss_pred hhhccchhhHHhHHHHHHhcCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcccCCCcEEEEeccCCCCCC
Q 003795 490 IYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDIL 569 (795)
Q Consensus 490 ~~~g~~~~~l~~lf~~ar~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVIatTN~~d~L 569 (795)
+|+|+.+++++.+|..|+...|||+||||+|++.+.|+... +.....++++|+.++++.....+|+||++||+++.+
T Consensus 315 k~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~---~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~l 391 (494)
T COG0464 315 KWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSE---DGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDL 391 (494)
T ss_pred cccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCC---chHHHHHHHHHHHHhcCCCccCceEEEecCCCcccc
Confidence 99999999999999999999999999999999998875432 222257999999999999999999999999999999
Q ss_pred CccccCCCcccceecCCCCCHHHHHHHHHHHHccCC--CCChhhHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcC-CCcc
Q 003795 570 DPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKP--MADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDG-RTEI 646 (795)
Q Consensus 570 dpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~~--~~~d~dl~~LA~~t~G~sgadL~~lv~~A~~~A~~~~-~~~I 646 (795)
|++++||||||..|+|++||..+|.+||+.+++... +..++++..++..|.||+|+||..+|++|...+.++. ...+
T Consensus 392 d~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~~~~~~~~~~~ 471 (494)
T COG0464 392 DPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAALEALREARRREV 471 (494)
T ss_pred CHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhccCCc
Confidence 999999999999999999999999999999999554 3578999999999999999999999999999999988 7789
Q ss_pred CHHHHHHHHHH
Q 003795 647 TTDDLLQAAQI 657 (795)
Q Consensus 647 t~edl~~Al~~ 657 (795)
+.+||..|+..
T Consensus 472 ~~~~~~~a~~~ 482 (494)
T COG0464 472 TLDDFLDALKK 482 (494)
T ss_pred cHHHHHHHHHh
Confidence 99999999875
No 29
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=4.4e-31 Score=273.01 Aligned_cols=227 Identities=34% Similarity=0.584 Sum_probs=198.4
Q ss_pred cccCccccccCccCchHHHHHHHHHHHhc-cccccccccCcccCCceEEECCCCCchhHHHHHhhhhccccEEEeeccce
Q 003795 409 LERGVDVKFSDVAGLGKIRLELEEIVKFF-THGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQF 487 (795)
Q Consensus 409 ~~~~~~~~f~~~~gl~~~~~~l~~lv~~~-~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~se~ 487 (795)
....+++.|+++.|++..+..+.+++... ..+.+|. -+..+-+||||+||||||||.||+++|.+.+..|++++.+++
T Consensus 124 v~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFt-GkR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDL 202 (439)
T KOG0739|consen 124 VREKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFT-GKRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDL 202 (439)
T ss_pred hccCCCCchhhhccchhHHHHHHhheeecccchhhhc-CCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHH
Confidence 34568999999999999999999987643 3344443 233344789999999999999999999999999999999999
Q ss_pred ehhhhccchhhHHhHHHHHHhcCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhccc-CCCcEEEEeccCCC
Q 003795 488 VEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE-GRGNVITIASTNRP 566 (795)
Q Consensus 488 ~~~~~g~~~~~l~~lf~~ar~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~-~~~~VlVIatTN~~ 566 (795)
++.++|..++.++.+|+.+|.+.|+||||||||.+++.|.. ..++-.|.+-..||.+|.++. ++.+|+|+++||.|
T Consensus 203 vSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~e---nEseasRRIKTEfLVQMqGVG~d~~gvLVLgATNiP 279 (439)
T KOG0739|consen 203 VSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSE---NESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIP 279 (439)
T ss_pred HHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCC---CchHHHHHHHHHHHHhhhccccCCCceEEEecCCCc
Confidence 99999999999999999999999999999999999877643 445666778899999999874 45789999999999
Q ss_pred CCCCccccCCCcccceecCCCCCHHHHHHHHHHHHccCCCC-ChhhHHHHHhhCCCCcHHHHHHHHHHHHHHHHHc
Q 003795 567 DILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMRD 641 (795)
Q Consensus 567 d~LdpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~~~~-~d~dl~~LA~~t~G~sgadL~~lv~~A~~~A~~~ 641 (795)
+.||.+++| ||+..||||+|+...|..+|+.|+...+.. .+.|+..|+..|+||||+||.-+++.|.....|.
T Consensus 280 w~LDsAIRR--RFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivVrDalmePvRk 353 (439)
T KOG0739|consen 280 WVLDSAIRR--RFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVVRDALMEPVRK 353 (439)
T ss_pred hhHHHHHHH--HhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEEehhhhhhhHHH
Confidence 999999999 999999999999999999999999987643 5678999999999999999999999988777654
No 30
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=6.9e-32 Score=281.03 Aligned_cols=248 Identities=39% Similarity=0.668 Sum_probs=231.5
Q ss_pred ccCccccccCccCchHHHHHHHHHHHh-ccccccccccCcccCCceEEECCCCCchhHHHHHhhhhccccEEEeecccee
Q 003795 410 ERGVDVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFV 488 (795)
Q Consensus 410 ~~~~~~~f~~~~gl~~~~~~l~~lv~~-~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~se~~ 488 (795)
+...++.|+.+.|+....-++.+.+.. +.++.++.++|+++|.|++||||||+|||.+++++|..++..++.+..+++.
T Consensus 124 e~~~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv 203 (388)
T KOG0651|consen 124 EDPRNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALV 203 (388)
T ss_pred cCccccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhh
Confidence 345678999999999999888887764 6788999999999999999999999999999999999999999999999999
Q ss_pred hhhhccchhhHHhHHHHHHhcCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcccCCCcEEEEeccCCCCC
Q 003795 489 EIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDI 568 (795)
Q Consensus 489 ~~~~g~~~~~l~~lf~~ar~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVIatTN~~d~ 568 (795)
+.|.|+....+++.|..|+...||++|+||||++++.+..-..+.+.....++..|+.+|+++.....|-+|+|||+|+.
T Consensus 204 ~kyiGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpdt 283 (388)
T KOG0651|consen 204 DKYIGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPDT 283 (388)
T ss_pred hhhcccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEEecCCccc
Confidence 99999999999999999999999999999999999988655567888888999999999999999999999999999999
Q ss_pred CCccccCCCcccceecCCCCCHHHHHHHHHHHHccCCCCChhhHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCccCH
Q 003795 569 LDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITT 648 (795)
Q Consensus 569 LdpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~~~~~d~dl~~LA~~t~G~sgadL~~lv~~A~~~A~~~~~~~It~ 648 (795)
|||+|+||||+|+.+++|.|+...|..|++.|.........+|...+...++||.|+|+.+.|.+|...|.+..+..+-.
T Consensus 284 LdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d~f~gad~rn~~tEag~Fa~~~~~~~vl~ 363 (388)
T KOG0651|consen 284 LDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVDGFNGADLRNVCTEAGMFAIPEERDEVLH 363 (388)
T ss_pred cchhhcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHHHHHhccChHHHhhhcccccccccchhhHHHhH
Confidence 99999999999999999999999999999999998888889999999999999999999999999999998888888999
Q ss_pred HHHHHHHHH
Q 003795 649 DDLLQAAQI 657 (795)
Q Consensus 649 edl~~Al~~ 657 (795)
+|+..++..
T Consensus 364 Ed~~k~vrk 372 (388)
T KOG0651|consen 364 EDFMKLVRK 372 (388)
T ss_pred HHHHHHHHH
Confidence 999888763
No 31
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=3e-30 Score=275.76 Aligned_cols=228 Identities=35% Similarity=0.614 Sum_probs=206.8
Q ss_pred cccCccccccCccCchHHHHHHHHHHHh-ccccccccccC-cccCCceEEECCCCCchhHHHHHhhhhccccEEEeeccc
Q 003795 409 LERGVDVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRG-VRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQ 486 (795)
Q Consensus 409 ~~~~~~~~f~~~~gl~~~~~~l~~lv~~-~~~~~~~~~~g-l~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~se 486 (795)
...+..+.|.++.|++.++..+.+.+.. +..+.+|...+ +.+++||||+||||||||.+|+++|.+.+..|+.++++.
T Consensus 83 ~p~~I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~ 162 (386)
T KOG0737|consen 83 PPSEIGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSN 162 (386)
T ss_pred chhhceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccc
Confidence 4556889999999999999999998774 45666775444 356789999999999999999999999999999999999
Q ss_pred eehhhhccchhhHHhHHHHHHhcCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcccCCCc--EEEEeccC
Q 003795 487 FVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGN--VITIASTN 564 (795)
Q Consensus 487 ~~~~~~g~~~~~l~~lf~~ar~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~--VlVIatTN 564 (795)
+.+.++|...+.++.+|..+....|||+||||+|.+++.|. .+..+-...+-++|+...||+..+.+ |+|++|||
T Consensus 163 lt~KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~---s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATN 239 (386)
T KOG0737|consen 163 LTSKWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRR---STDHEATAMMKNEFMALWDGLSSKDSERVLVLGATN 239 (386)
T ss_pred cchhhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcc---cchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCC
Confidence 99999999999999999999999999999999999998873 35666677788999999999987765 99999999
Q ss_pred CCCCCCccccCCCcccceecCCCCCHHHHHHHHHHHHccCCCCChhhHHHHHhhCCCCcHHHHHHHHHHHHHHHHHc
Q 003795 565 RPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRD 641 (795)
Q Consensus 565 ~~d~LdpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~~~~~d~dl~~LA~~t~G~sgadL~~lv~~A~~~A~~~ 641 (795)
+|..+|.+++| |+.+.++|+.|+..+|..|++..++...+.+++|+..+|..|.||||.||.++|+.|++..++.
T Consensus 240 RP~DlDeAiiR--R~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~ire 314 (386)
T KOG0737|consen 240 RPFDLDEAIIR--RLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLKELCRLAALRPIRE 314 (386)
T ss_pred CCccHHHHHHH--hCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHHHHHHHHhHhHHHH
Confidence 99999999999 9999999999999999999999999999999999999999999999999999999999877653
No 32
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.97 E-value=2.9e-29 Score=286.07 Aligned_cols=265 Identities=34% Similarity=0.581 Sum_probs=209.8
Q ss_pred ccCccccccCccCchHHHHHHHHHHHh-ccccccccccCcccCCceEEECCCCCchhHHHHHhhhhcccc----------
Q 003795 410 ERGVDVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVN---------- 478 (795)
Q Consensus 410 ~~~~~~~f~~~~gl~~~~~~l~~lv~~-~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el~~~---------- 478 (795)
+..+++.|+++.|++..+..+.+.+.. +.++..|...|+..|+|+||+||||||||++++++|++++.+
T Consensus 174 ~~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~ 253 (512)
T TIGR03689 174 EEVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSY 253 (512)
T ss_pred ecCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCcee
Confidence 345678999999999999999998764 667889999999999999999999999999999999987543
Q ss_pred EEEeeccceehhhhccchhhHHhHHHHHHhc----CCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcccCC
Q 003795 479 FFSISASQFVEIYVGVGASRVRSLYQEAKDN----APSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGR 554 (795)
Q Consensus 479 ~~~is~se~~~~~~g~~~~~l~~lf~~ar~~----~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~ 554 (795)
|+.++.+++...|+|.....++.+|+.++.. .|+|+||||+|.++..++... .++..+.+++.|+..||++...
T Consensus 254 fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~--s~d~e~~il~~LL~~LDgl~~~ 331 (512)
T TIGR03689 254 FLNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGV--SSDVETTVVPQLLSELDGVESL 331 (512)
T ss_pred EEeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCc--cchHHHHHHHHHHHHhcccccC
Confidence 5567777888889999999999999988764 699999999999987764321 2233456789999999999888
Q ss_pred CcEEEEeccCCCCCCCccccCCCcccceecCCCCCHHHHHHHHHHHHccC-CCCC---------hhhHHHHH--------
Q 003795 555 GNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKK-PMAD---------DVDYLAVA-------- 616 (795)
Q Consensus 555 ~~VlVIatTN~~d~LdpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~-~~~~---------d~dl~~LA-------- 616 (795)
.+++||+|||+++.|||+++||||||..|+|++|+.++|.+||+.++... ++.. ..+...++
T Consensus 332 ~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~l~~~l~~~~g~~~a~~~al~~~av~~~~ 411 (512)
T TIGR03689 332 DNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLPLDADLAEFDGDREATAAALIQRAVDHLY 411 (512)
T ss_pred CceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCCchHHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence 89999999999999999999999999999999999999999999998753 3211 11122221
Q ss_pred ---------------------hhCCCCcHHHHHHHHHHHHHHHHHc----CCCccCHHHHHHHHHHHHhcc-cccccccc
Q 003795 617 ---------------------SMTDGMVGAELANIVEVAAINMMRD----GRTEITTDDLLQAAQIEERGM-LDRKERSS 670 (795)
Q Consensus 617 ---------------------~~t~G~sgadL~~lv~~A~~~A~~~----~~~~It~edl~~Al~~~~~~~-~~~~~~~~ 670 (795)
..++.+||++|.++|.+|...|..+ +...++.+|+..|+..+.... --.....+
T Consensus 412 a~~~~~~~l~~~~~~g~~~~l~~~d~~sGa~i~~iv~~a~~~ai~~~~~~~~~~~~~~~l~~a~~~e~~~~~~~~~~~~~ 491 (512)
T TIGR03689 412 ATSEENRYVEVTYANGSTEVLYFKDFVSGAMIANIVDRAKKRAIKDHITGGQVGLRIEHLLAAVLDEFRESEDLPNTTNP 491 (512)
T ss_pred hhhcccceeEEEecCCceeeEeecccccHHHHHHHHHHHHHHHHHHHHhcCCcCcCHHHHHHHHHHhhcccccCCCCCCH
Confidence 1255688999999999998877754 345789999999988665421 11223345
Q ss_pred hhhhHH
Q 003795 671 ETWRQV 676 (795)
Q Consensus 671 ~~~~~v 676 (795)
++|.++
T Consensus 492 ~~w~~~ 497 (512)
T TIGR03689 492 DDWARI 497 (512)
T ss_pred HHHhhh
Confidence 666544
No 33
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=4e-29 Score=292.19 Aligned_cols=295 Identities=23% Similarity=0.272 Sum_probs=242.1
Q ss_pred CCCcccccccccCcccccccCCCchhhHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003795 205 VPNPYLGFLWRVPASMLSTFRPKKESKRAAEIRRAREELKRQRKEELEKMREESEMMEKAMDMQKKEEERRRKKEIRLQK 284 (795)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~k~eld~~~~~~~~le~e~~~l~~e~~~~~~~~~rl~~ 284 (795)
+++..|....++|++|++.+++||+|.+|+|++||+..++...-++++++.+++.+++.|..++++|.+
T Consensus 357 i~D~Al~aAv~LS~RYI~dR~LPDKAIDLiDeA~a~~~l~~~~p~~l~~~~~~~~~l~~e~~~~~~e~~----------- 425 (786)
T COG0542 357 ITDEALVAAVTLSDRYIPDRFLPDKAIDLLDEAGARVRLEIDKPEELDELERELAQLEIEKEALEREQD----------- 425 (786)
T ss_pred ecHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHhcccCCcchhHHHHHHHHHHHHHHHHhhhhh-----------
Confidence 344788899999999999999999999999999999999876556788888888888888888887776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccceeeeechhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003795 285 YEESLQDARDNYRYMANVWENLAKDSTVATGLGIVFFVIFYRTVVLNYRRQKKDYEDRLKIEKAEREERKKLRQLERELE 364 (795)
Q Consensus 285 l~~el~~l~~~~~~l~~~w~~ek~~~~~i~~l~~~~~l~~Ykgny~~y~~~~e~~e~~~~~ek~~e~~~~ei~~Lekele 364 (795)
++++..++.+.++ +...++.++++++
T Consensus 426 -------------------~~~k~~~~~~~~~-----------------------------------~~~~~~~~~~~~~ 451 (786)
T COG0542 426 -------------------EKEKKLIDEIIKL-----------------------------------KEGRIPELEKELE 451 (786)
T ss_pred -------------------HHHHHHHHHHHHH-----------------------------------hhhhhhhHHHHHh
Confidence 1122222222222 0023333334332
Q ss_pred hhhccchhhhhhhhhcCchHHHhhchhhhHHHHHHHhcCCCCcccccCccccccCccCchHHHHHHHHHHHhcccccccc
Q 003795 365 GLEGADDEIEQGEAEQNPHLKMAMQFMKSGARVRRAYGKGLPQYLERGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYR 444 (795)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~k~~v~~~~~~~~vsr~tgipv~~~~~~~~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~ 444 (795)
. + ++...+++++++|||||+.++.+.+.....+....+++.+.++++++..+.+.....
T Consensus 452 ~-~--------------------v~~~~Ia~vv~~~TgIPv~~l~~~e~~kll~le~~L~~rViGQd~AV~avs~aIrra 510 (786)
T COG0542 452 A-E--------------------VDEDDIAEVVARWTGIPVAKLLEDEKEKLLNLERRLKKRVIGQDEAVEAVSDAIRRA 510 (786)
T ss_pred h-c--------------------cCHHHHHHHHHHHHCCChhhhchhhHHHHHHHHHHHhcceeChHHHHHHHHHHHHHH
Confidence 1 1 778889999999999999999999999988888889999999999999999999999
Q ss_pred ccCcccCC----ceEEECCCCCchhHHHHHhhhhcc---ccEEEeeccceehh------------hhccchhhHHhHHHH
Q 003795 445 RRGVRIPG----GILLCGPPGVGKTLLAKAVAGEAG---VNFFSISASQFVEI------------YVGVGASRVRSLYQE 505 (795)
Q Consensus 445 ~~gl~i~~----giLL~GPpGtGKTtLakaLA~el~---~~~~~is~se~~~~------------~~g~~~~~l~~lf~~ 505 (795)
+.|+..|. +++|.||+|+|||.||++||..+. ..+++++||+|++. |+|+..+.. +.+.
T Consensus 511 RaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrLIGaPPGYVGyeeGG~--LTEa 588 (786)
T COG0542 511 RAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVSRLIGAPPGYVGYEEGGQ--LTEA 588 (786)
T ss_pred hcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHHHHhCCCCCCceeccccc--hhHh
Confidence 99998773 399999999999999999999885 78999999999986 888877644 8999
Q ss_pred HHhcCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcc---------cCCCcEEEEeccCCCC---------
Q 003795 506 AKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGF---------EGRGNVITIASTNRPD--------- 567 (795)
Q Consensus 506 ar~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~---------~~~~~VlVIatTN~~d--------- 567 (795)
+++.++||+++|||++.+++ +++.||+.||.- .+..|++||+|||--.
T Consensus 589 VRr~PySViLlDEIEKAHpd--------------V~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~Gs~~i~~~~~~ 654 (786)
T COG0542 589 VRRKPYSVILLDEIEKAHPD--------------VFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNAGSEEILRDADG 654 (786)
T ss_pred hhcCCCeEEEechhhhcCHH--------------HHHHHHHHhcCCeeecCCCCEEecceeEEEEecccchHHHHhhccc
Confidence 99999999999999999988 999999999862 2457899999998531
Q ss_pred -------------------CCCccccCCCcccceecCCCCCHHHHHHHHHHHHcc
Q 003795 568 -------------------ILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARK 603 (795)
Q Consensus 568 -------------------~LdpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~ 603 (795)
.+.|+|++ |+|.+|.|.+.+.+...+|+...+..
T Consensus 655 ~~~~~~~~~~~~v~~~l~~~F~PEFLN--Rid~II~F~~L~~~~l~~Iv~~~L~~ 707 (786)
T COG0542 655 DDFADKEALKEAVMEELKKHFRPEFLN--RIDEIIPFNPLSKEVLERIVDLQLNR 707 (786)
T ss_pred cccchhhhHHHHHHHHHHhhCCHHHHh--hcccEEeccCCCHHHHHHHHHHHHHH
Confidence 24678888 99999999999999999999877753
No 34
>PF01434 Peptidase_M41: Peptidase family M41 This is family M41 in the peptidase classification. ; InterPro: IPR000642 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M41 (FtsH endopeptidase family, clan MA(E)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. The peptidase M41 family belong to a larger family of zinc metalloproteases. This family includes the cell division protein FtsH, and the yeast mitochondrial respiratory chain complexes assembly protein, which is a putative ATP-dependent protease required for assembly of the mitochondrial respiratory chain and ATPase complexes. FtsH is an integral membrane protein, which seems to act as an ATP-dependent zinc metallopeptidase that binds one zinc ion.; GO: 0004222 metalloendopeptidase activity, 0005524 ATP binding, 0006508 proteolysis; PDB: 4EIW_C 2DHR_E 1IY1_A 1IY2_A 1IY0_A 1IXZ_A 2CE7_F 2CEA_F 3KDS_E 2QZ4_A ....
Probab=99.95 E-value=2.5e-28 Score=252.09 Aligned_cols=140 Identities=34% Similarity=0.424 Sum_probs=117.6
Q ss_pred CHHHHHHHHHHHHhccccc-ccccchhhhHHHHHHHHHHHHHHhcCCCCccceEEEecCCCccccceeecccchhhhhcc
Q 003795 647 TTDDLLQAAQIEERGMLDR-KERSSETWRQVAINEAAMAVVAVNFPDLKNIEFVTIAPRAGRELGYVRMKMDHMKFKEGM 725 (795)
Q Consensus 647 t~edl~~Al~~~~~~~~~~-~~~~~~~~~~va~hEaGhalva~~l~~~~~i~~vtI~pr~g~~lG~~~~~~~e~~~~~~~ 725 (795)
|++||.+|++....|...+ ...++++++++|+|||||||+++++++..+|.+|||+|| |.++||+.+.|.++ ...
T Consensus 1 ~~~d~~~a~drv~~G~~~~~~~~~~~~~~~~A~HEAGhAvva~~l~~~~~v~~vsi~pr-g~~~G~~~~~~~~~---~~~ 76 (213)
T PF01434_consen 1 TMEDIEEAIDRVLMGPEKKSRKLSEEEKRRIAYHEAGHAVVAYLLPPADPVSKVSIVPR-GSALGFTQFTPDED---RYI 76 (213)
T ss_dssp -HHHHHHHHHHHHCCSCCTTS---HHHHHHHHHHHHHHHHHHHHSSS---EEEEESSTT-CCCCHCCEECHHTT----SS
T ss_pred CHHHHHHHHHHHhcCcCcCCCCCCHHHHHHHHHHHHHHHHHHHHhcccccEEEEEEecC-CCcceeEEeccchh---ccc
Confidence 6789999999888777653 556789999999999999999999998899999999999 77999999998765 567
Q ss_pred ccHHHHHHHHHHHhChHHHHHHHhCCCCcccchhhhHHHHHHHHHHHH-HhcCCCCCCCcccccccc
Q 003795 726 LSRQSLLDHITVQLAPRAADELWCGEGQLSTIWAETADNARSAARTFV-LGGLSDKHFGLSNFWVAD 791 (795)
Q Consensus 726 ~tr~~ll~~I~vlLaGRaAEel~~G~~~vstGa~~Dl~~At~iA~~mV-~~Gm~~~~~g~~~~~~~~ 791 (795)
.||.+++++|+|+|||||||+++||.+++|+|+++||.+||.||+.|| +||||+.. |+++|+..+
T Consensus 77 ~t~~~l~~~i~v~LaGraAEe~~~g~~~~stGa~~DL~~At~iA~~mv~~~Gm~~~~-g~~~~~~~~ 142 (213)
T PF01434_consen 77 RTRSYLEDRICVLLAGRAAEELFFGEDNVSTGASSDLQQATEIARKMVASYGMGDSL-GLLSYSPND 142 (213)
T ss_dssp -BHHHHHHHHHHHHHHHHHHHHHHSCCS-BGGGHHHHHHHHHHHHHHHHTST-TTTT-TSS-SEEEE
T ss_pred ccHHHHHhhHHHHHHHHHHHHhhcCcceecccchhHHHHHHHHHHHHHHHhCCCCCC-ceeeeeccc
Confidence 999999999999999999999999988899999999999999999999 99999975 999987644
No 35
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.95 E-value=8.3e-27 Score=251.86 Aligned_cols=232 Identities=19% Similarity=0.215 Sum_probs=177.4
Q ss_pred ccCcccCCceEEECCCCCchhHHHHHhhhhccccEEEeeccceehhhhccchhhHHhHHHHHHh-----cCCceeEhHHH
Q 003795 445 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKD-----NAPSVVFIDEL 519 (795)
Q Consensus 445 ~~gl~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~se~~~~~~g~~~~~l~~lf~~ar~-----~~p~Il~IDEI 519 (795)
..|+++|.+++|+||||||||+++++||++++.+++.++++++.+.|+|+.++.++.+|..|+. ..|||||||||
T Consensus 142 ~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEI 221 (413)
T PLN00020 142 LPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCLFINDL 221 (413)
T ss_pred ccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehh
Confidence 3788999999999999999999999999999999999999999999999999999999999975 46999999999
Q ss_pred HHHhhhccCCCCCCcchHHHHHHHHHHhhhcc------------cCCCcEEEEeccCCCCCCCccccCCCcccceecCCC
Q 003795 520 DAVGRERGLIKGSGGQERDATLNQLLVCLDGF------------EGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPK 587 (795)
Q Consensus 520 D~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~------------~~~~~VlVIatTN~~d~LdpaLlrpgRFd~~I~~~~ 587 (795)
|++++.++. ..+....+.+...||..+|+. ....+|+||+|||+++.|||+|+||||||+.+ ..
T Consensus 222 DA~~g~r~~--~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i--~l 297 (413)
T PLN00020 222 DAGAGRFGT--TQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WA 297 (413)
T ss_pred hhcCCCCCC--CCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCCcee--CC
Confidence 999887752 122222344457888888752 23567999999999999999999999999975 47
Q ss_pred CCHHHHHHHHHHHHccCCCCChhhHHHHHhhCCC----CcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHHhccc
Q 003795 588 PGLIGRMEILKVHARKKPMADDVDYLAVASMTDG----MVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEERGML 663 (795)
Q Consensus 588 Pd~~eR~~Il~~~l~~~~~~~d~dl~~LA~~t~G----~sgadL~~lv~~A~~~A~~~~~~~It~edl~~Al~~~~~~~~ 663 (795)
|+.++|.+|++.++++..+. ..|+..|+..++| |+|+--..+..++...-+.+ +..+.+-..+-....+.+
T Consensus 298 Pd~e~R~eIL~~~~r~~~l~-~~dv~~Lv~~f~gq~~Df~GAlrar~yd~~v~~~i~~----~g~~~~~~~l~~~~~~~p 372 (413)
T PLN00020 298 PTREDRIGVVHGIFRDDGVS-REDVVKLVDTFPGQPLDFFGALRARVYDDEVRKWIAE----VGVENLGKKLVNSKKGPP 372 (413)
T ss_pred CCHHHHHHHHHHHhccCCCC-HHHHHHHHHcCCCCCchhhhHHHHHHHHHHHHHHHHH----hhHHHHHHHHhcCCCCCC
Confidence 99999999999999987765 5788899988887 56766667777666544322 233333332222111111
Q ss_pred ccccccchhhhHHHHHHHHHHHHHH
Q 003795 664 DRKERSSETWRQVAINEAAMAVVAV 688 (795)
Q Consensus 664 ~~~~~~~~~~~~va~hEaGhalva~ 688 (795)
...+.....-..-|+||.++..
T Consensus 373 ---~f~~~~~t~~~l~~~g~~l~~e 394 (413)
T PLN00020 373 ---TFEPPKMTLEKLLEYGNMLVRE 394 (413)
T ss_pred ---CCCCCCCCHHHHHHHHHHHHHH
Confidence 1112233455678888888764
No 36
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.95 E-value=3e-26 Score=277.18 Aligned_cols=460 Identities=22% Similarity=0.290 Sum_probs=300.0
Q ss_pred hhhhcccccccceeecccCC---ccccccccceEEeecCcceeeeccCCcccchhhh-hcccccccccccccccCCCCCC
Q 003795 127 TEIFSLKDEGKLKHVIKSPS---GSLRQKAEPVLVVLEDSRVLRTVLPSLDSNRKFW-ESWDELKIDSLCVNAYTPPLKK 202 (795)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 202 (795)
.+|++++++++|.++.+.|+ |.+++.++|+ -|..+-++....-|| +.-+.+.- . .++.+.
T Consensus 56 ~~ly~VGt~a~I~~~~~~~d~~dG~~~Ilv~G~---------~R~rI~~~~~~~p~~~A~V~~l~~--~-----~~~~~~ 119 (775)
T TIGR00763 56 DDIYSVGVVAQILEMLPLPSSGTATYKVVVEGL---------RRIRIKELSDKGGYLVVRVDNLKE--E-----PFDKDD 119 (775)
T ss_pred ccccCCceEEEEEEeccCCCCCCCeEEEEEEEE---------EEEEEEEEecCCCcEEEEEEEecC--c-----CCCCCc
Confidence 57999999999999999555 9999999999 777777765554444 22221211 0 001111
Q ss_pred CCCCC----------ccccccc--ccCcccccccCCCchhhHHHHHHHHHHHHH-HHhHHHHhhhhHHHHHHHHHHHHHH
Q 003795 203 PEVPN----------PYLGFLW--RVPASMLSTFRPKKESKRAAEIRRAREELK-RQRKEELEKMREESEMMEKAMDMQK 269 (795)
Q Consensus 203 ~~~~~----------~~~~~~~--~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~-~~~k~eld~~~~~~~~le~e~~~l~ 269 (795)
.++.. .|+.... +.+.+.+......+.|.+|+|.+|+.+.+. ..+||+|.+...-..+++.-...|.
T Consensus 120 ~e~~al~~~l~~~~~el~~l~~l~~~~~e~~~~~~~~~dp~~Lad~ia~~L~l~~~~eKQ~LLE~~d~~~RL~~l~~lL~ 199 (775)
T TIGR00763 120 EEIKALTREIKETFRELISLSKLFREQPALLSALEDIDEPGRLADFVAASLQLKEKDELQEVLETVNIEKRLKKALELLK 199 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHhCccccCCHHHHHHHhccCCHHHHHHHHHHhcCCCcHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 22222 3444444 566666677778899999999999999999 9999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccceeeeechhhHHHHHHHHHHHHHHHHHHHHH
Q 003795 270 KEEERRRKKEIRLQKYEESLQDARDNYRYMANVWENLAKDSTVATGLGIVFFVIFYRTVVLNYRRQKKDYEDRLKIEKAE 349 (795)
Q Consensus 270 ~e~~~~~~~~~rl~~l~~el~~l~~~~~~l~~~w~~ek~~~~~i~~l~~~~~l~~Ykgny~~y~~~~e~~e~~~~~ek~~ 349 (795)
+|.+..+.+++...++++++++.|++| -|++|-+.-++.+....+- ....+.|.+.++...
T Consensus 200 ~ele~l~l~~~I~~~v~~~~~~~qr~~-~Lreqlk~i~~eLg~~~~~---------~~~~~~~~~k~~~~~--------- 260 (775)
T TIGR00763 200 KELELLKLQNKITKKVEEKMEKTQREY-YLREQLKAIKKELGIEKDD---------KDELEKLKEKLEELK--------- 260 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhCCCCCc---------hhHHHHHHHHHHhcC---------
Confidence 999999988889999999999999999 6666666544433221111 222333333332111
Q ss_pred HHHHHHHHHHHHHHhhhhccchhhhhhhhhcCchHHHhhchhhhHHHHHHHhcCCCCcccccCcc------ccccCccCc
Q 003795 350 REERKKLRQLERELEGLEGADDEIEQGEAEQNPHLKMAMQFMKSGARVRRAYGKGLPQYLERGVD------VKFSDVAGL 423 (795)
Q Consensus 350 e~~~~ei~~Lekele~~~~~~~~~~~~~~~~~~~~k~~v~~~~~~~~vsr~tgipv~~~~~~~~~------~~f~~~~gl 423 (795)
.-.+-.+.+.+++.+++.-.. .. -...-...-+.+++++|+........+ ..-.++.|+
T Consensus 261 -~~~~~~~~~~~e~~~~~~~~~--------~~------~~~~~~~~yl~~~~~ip~~~~~~~~~~~~~~~~~l~~~~~G~ 325 (775)
T TIGR00763 261 -LPEEVKKVIEKELTKLSLLEP--------SS------SEFTVTRNYLDWLTDLPWGKYSKENLDLKRAKEILDEDHYGL 325 (775)
T ss_pred -CCHHHHHHHHHHHHHHHcCCC--------CC------chHHHHHHHHHHHHCCCCcccccchhhHHHHHHHhhhhcCCh
Confidence 112223344444544442110 00 011122455677889998765543211 112447788
Q ss_pred hHHHHHHHHHHHhccccccccccCcccCCceEEECCCCCchhHHHHHhhhhccccEEEeeccceeh---------hhhcc
Q 003795 424 GKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVE---------IYVGV 494 (795)
Q Consensus 424 ~~~~~~l~~lv~~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~se~~~---------~~~g~ 494 (795)
++++..+.+.+...... . +. ....++|+||||||||+++++||+.++.+++.++++.... .|+|.
T Consensus 326 ~~~k~~i~~~~~~~~~~---~--~~-~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~~~~~g~ 399 (775)
T TIGR00763 326 KKVKERILEYLAVQKLR---G--KM-KGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHRRTYVGA 399 (775)
T ss_pred HHHHHHHHHHHHHHHhh---c--CC-CCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCCCceeCC
Confidence 88887777655432110 0 11 1125999999999999999999999999999998765432 36777
Q ss_pred chhhHHhHHHHHHhcCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhc-----cc--------CCCcEEEEe
Q 003795 495 GASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDG-----FE--------GRGNVITIA 561 (795)
Q Consensus 495 ~~~~l~~lf~~ar~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~-----~~--------~~~~VlVIa 561 (795)
..+.+...|..+....| |++|||||.+.+... +. ..+.|+..+|. +. +.+++++|+
T Consensus 400 ~~g~i~~~l~~~~~~~~-villDEidk~~~~~~------~~----~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I~ 468 (775)
T TIGR00763 400 MPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSFR------GD----PASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFIA 468 (775)
T ss_pred CCchHHHHHHHhCcCCC-EEEEechhhcCCccC------CC----HHHHHHHhcCHHhcCccccccCCceeccCCEEEEE
Confidence 77777777777766666 899999999975321 11 34556665552 11 236799999
Q ss_pred ccCCCCCCCccccCCCcccceecCCCCCHHHHHHHHHHHHc-----cCCCC------ChhhHHHHHh-hCCCCcHHHHH-
Q 003795 562 STNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHAR-----KKPMA------DDVDYLAVAS-MTDGMVGAELA- 628 (795)
Q Consensus 562 tTN~~d~LdpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~-----~~~~~------~d~dl~~LA~-~t~G~sgadL~- 628 (795)
|||.++.++++|++ ||+ +|.|+.|+.+++..|++.++. ...+. ++..+..++. .+..+..++|.
T Consensus 469 TtN~~~~i~~~L~~--R~~-vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~e~g~R~l~r 545 (775)
T TIGR00763 469 TANSIDTIPRPLLD--RME-VIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKYYTREAGVRNLER 545 (775)
T ss_pred ecCCchhCCHHHhC--Cee-EEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHhcChhcCChHHHH
Confidence 99999999999999 996 889999999999999987762 11221 2223444444 33334445554
Q ss_pred ---HHHHHHHHHHHHcCC--------CccCHHHHHHHHH
Q 003795 629 ---NIVEVAAINMMRDGR--------TEITTDDLLQAAQ 656 (795)
Q Consensus 629 ---~lv~~A~~~A~~~~~--------~~It~edl~~Al~ 656 (795)
.+|+.++......+. ..|+.+++..-+.
T Consensus 546 ~i~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~lg 584 (775)
T TIGR00763 546 QIEKICRKAAVKLVEQGEKKKSEAESVVITPDNLKKYLG 584 (775)
T ss_pred HHHHHHHHHHHHHHhccCcccCCcccccCCHHHHHHhcC
Confidence 455544433332222 3577777766554
No 37
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.95 E-value=1.2e-26 Score=282.16 Aligned_cols=353 Identities=19% Similarity=0.263 Sum_probs=265.5
Q ss_pred cccccccccCcccccccCCCchhhHHHHHHHHHHHHHHHhHHH-HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003795 208 PYLGFLWRVPASMLSTFRPKKESKRAAEIRRAREELKRQRKEE-LEKMREESEMMEKAMDMQKKEEERRRKKEIRLQKYE 286 (795)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~k~e-ld~~~~~~~~le~e~~~l~~e~~~~~~~~~rl~~l~ 286 (795)
..+.....++++|++.+..||++.+|+|++++...++...+++ |+++.+.+..|+.+++.++.|.+..... |+++++
T Consensus 368 ~a~~~a~~ls~ry~~~~~~pdkAi~LiD~aaa~~rl~~~~kp~~L~rLer~l~~L~~E~e~l~~e~~~~~~~--~~~~l~ 445 (857)
T PRK10865 368 PAIVAAATLSHRYIADRQLPDKAIDLIDEAASSIRMQIDSKPEELDRLDRRIIQLKLEQQALMKESDEASKK--RLDMLN 445 (857)
T ss_pred HHHHHHHHHhhccccCCCCChHHHHHHHHHhcccccccccChHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH--HHHHHH
Confidence 4445556789999999999999999999999999998776664 7899999999999999998877655444 899999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhccccceeeeechhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 003795 287 ESLQDARDNYRYMANVWENLAKDSTVATGLGIVFFVIFYRTVVLNYRRQKKDYEDRLKIEKAEREERKKLRQLERELEGL 366 (795)
Q Consensus 287 ~el~~l~~~~~~l~~~w~~ek~~~~~i~~l~~~~~l~~Ykgny~~y~~~~e~~e~~~~~ek~~e~~~~ei~~Lekele~~ 366 (795)
++++++++++..+.++|+.+++.+..+.++ +..++.+....+++++..+.....+.++..++.+++++...
T Consensus 446 ~~l~~lq~e~~~L~eq~k~~k~el~~~~~~---------~~ele~l~~kie~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 516 (857)
T PRK10865 446 EELSDKERQYSELEEEWKAEKASLSGTQTI---------KAELEQAKIAIEQARRVGDLARMSELQYGKIPELEKQLAAA 516 (857)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHH---------HHHHHHHHHHHHHHHhhhhhhhHHHhhhhhhHHHHHHHHHH
Confidence 999999999999999999999988888877 77788888778877777777777777788888888877654
Q ss_pred hccchhhhhhhhhcCchHHHhhchhhhHHHHHHHhcCCCCcccccCccccc-------cCccCchHHHHHHHHHHHhccc
Q 003795 367 EGADDEIEQGEAEQNPHLKMAMQFMKSGARVRRAYGKGLPQYLERGVDVKF-------SDVAGLGKIRLELEEIVKFFTH 439 (795)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~k~~v~~~~~~~~vsr~tgipv~~~~~~~~~~~f-------~~~~gl~~~~~~l~~lv~~~~~ 439 (795)
+... ..........++...++.++++|||||+..+...+..... ..+.|....+..+...+..
T Consensus 517 ~~~~-------~~~~~~~~~~v~~~~i~~vv~~~tgip~~~~~~~~~~~l~~l~~~l~~~viGQ~~ai~~l~~~i~~--- 586 (857)
T PRK10865 517 TQLE-------GKTMRLLRNKVTDAEIAEVLARWTGIPVSRMLESEREKLLRMEQELHHRVIGQNEAVEAVSNAIRR--- 586 (857)
T ss_pred Hhhh-------ccccccccCccCHHHHHHHHHHHHCCCchhhhhhHHHHHHHHHHHhCCeEeCCHHHHHHHHHHHHH---
Confidence 3211 0112234456888899999999999999988776544333 2344555555554444432
Q ss_pred cccccccCcccC----CceEEECCCCCchhHHHHHhhhhc---cccEEEeeccceehh------------hhccchhhHH
Q 003795 440 GEMYRRRGVRIP----GGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEI------------YVGVGASRVR 500 (795)
Q Consensus 440 ~~~~~~~gl~i~----~giLL~GPpGtGKTtLakaLA~el---~~~~~~is~se~~~~------------~~g~~~~~l~ 500 (795)
...|+..| +.++|+||+|||||++|++|+..+ +.+++.++++++... |+|.... .
T Consensus 587 ----~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~~~~~LiG~~pgy~g~~~~--g 660 (857)
T PRK10865 587 ----SRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEG--G 660 (857)
T ss_pred ----HHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhhhHHHHhCCCCcccccchh--H
Confidence 23333322 248999999999999999999876 457899999887543 2222222 2
Q ss_pred hHHHHHHhcCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcc---------cCCCcEEEEeccCCC-----
Q 003795 501 SLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGF---------EGRGNVITIASTNRP----- 566 (795)
Q Consensus 501 ~lf~~ar~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~---------~~~~~VlVIatTN~~----- 566 (795)
.+.+..+..++++++|||++.+.+. +++.|++.++.- .+..+.+||+|||..
T Consensus 661 ~l~~~v~~~p~~vLllDEieka~~~--------------v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN~g~~~~~ 726 (857)
T PRK10865 661 YLTEAVRRRPYSVILLDEVEKAHPD--------------VFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQ 726 (857)
T ss_pred HHHHHHHhCCCCeEEEeehhhCCHH--------------HHHHHHHHHhhCceecCCceEEeecccEEEEeCCcchHHHH
Confidence 2455566667799999999988765 778888877642 123567899999973
Q ss_pred --------------------CCCCccccCCCcccceecCCCCCHHHHHHHHHHHHcc
Q 003795 567 --------------------DILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARK 603 (795)
Q Consensus 567 --------------------d~LdpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~ 603 (795)
..+.|+|++ |+|.++.|.+++.+....|++.++..
T Consensus 727 ~~~~~~~~~~~~~~~~~~~~~~f~PELln--Rld~iivF~PL~~edl~~Iv~~~L~~ 781 (857)
T PRK10865 727 ERFGELDYAHMKELVLGVVSHNFRPEFIN--RIDEVVVFHPLGEQHIASIAQIQLQR 781 (857)
T ss_pred HhccccchHHHHHHHHHHHcccccHHHHH--hCCeeEecCCCCHHHHHHHHHHHHHH
Confidence 135678887 99999999999999999998877754
No 38
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.1e-26 Score=262.75 Aligned_cols=232 Identities=39% Similarity=0.642 Sum_probs=211.4
Q ss_pred cccccCccCchHHHHHHHHHHHh-ccccccccccCcccCCceEEECCCCCchhHHHHHhhhhccccEEEeeccceehhhh
Q 003795 414 DVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYV 492 (795)
Q Consensus 414 ~~~f~~~~gl~~~~~~l~~lv~~-~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~se~~~~~~ 492 (795)
.+. .++.|+......+++++.. +.++..+...|.++|+|+|++||||+|||.+++++|++.+..++.+++.++...|.
T Consensus 181 ~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~~ 259 (693)
T KOG0730|consen 181 EVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKFP 259 (693)
T ss_pred ccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhcc
Confidence 344 5677888888777777764 56778888999999999999999999999999999999999999999999999999
Q ss_pred ccchhhHHhHHHHHHhcC-CceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcccCCCcEEEEeccCCCCCCCc
Q 003795 493 GVGASRVRSLYQEAKDNA-PSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDP 571 (795)
Q Consensus 493 g~~~~~l~~lf~~ar~~~-p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVIatTN~~d~Ldp 571 (795)
|++...++..|+.+.... |+++||||+|.+.+++.... + ..+.+..+|+..+|+....++++||++||+++.|||
T Consensus 260 gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~---~-~e~Rv~sqlltL~dg~~~~~~vivl~atnrp~sld~ 335 (693)
T KOG0730|consen 260 GETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGAD---D-VESRVVSQLLTLLDGLKPDAKVIVLAATNRPDSLDP 335 (693)
T ss_pred cchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccc---h-HHHHHHHHHHHHHhhCcCcCcEEEEEecCCccccCh
Confidence 999999999999999999 99999999999998865322 2 456688999999999988899999999999999999
Q ss_pred cccCCCcccceecCCCCCHHHHHHHHHHHHccCCCCChhhHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCccCHHHH
Q 003795 572 ALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDL 651 (795)
Q Consensus 572 aLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~~~~~d~dl~~LA~~t~G~sgadL~~lv~~A~~~A~~~~~~~It~edl 651 (795)
+++| ||||+.+.+..|+..+|.+|++.+.++.+..++.++..+|..|.||+|+||..+|++|...+.++ +++++
T Consensus 336 alRR-gRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r~-----~~~~~ 409 (693)
T KOG0730|consen 336 ALRR-GRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGADLAALCREASLQATRR-----TLEIF 409 (693)
T ss_pred hhhc-CCCcceeeecCCCchhHHHHHHHHHHhcCCcchhhHHHHHHHccchhHHHHHHHHHHHHHHHhhh-----hHHHH
Confidence 9999 99999999999999999999999999999988899999999999999999999999999999887 78888
Q ss_pred HHHHH
Q 003795 652 LQAAQ 656 (795)
Q Consensus 652 ~~Al~ 656 (795)
..|..
T Consensus 410 ~~A~~ 414 (693)
T KOG0730|consen 410 QEALM 414 (693)
T ss_pred HHHHh
Confidence 88876
No 39
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=2.5e-27 Score=260.22 Aligned_cols=243 Identities=33% Similarity=0.556 Sum_probs=201.2
Q ss_pred ccccccC--ccCchHHHHHHHHH--HHhccccccccccCcccCCceEEECCCCCchhHHHHHhhhhccc-cEEEeeccce
Q 003795 413 VDVKFSD--VAGLGKIRLELEEI--VKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGV-NFFSISASQF 487 (795)
Q Consensus 413 ~~~~f~~--~~gl~~~~~~l~~l--v~~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el~~-~~~~is~se~ 487 (795)
+++.|.+ +.|++.....+-+- ...+-.+....++|++--+|+||+||||||||.+||.|..-++. +---+++.+.
T Consensus 214 Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeI 293 (744)
T KOG0741|consen 214 PDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEI 293 (744)
T ss_pred CCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHH
Confidence 5666665 45776654333221 22233567788999999999999999999999999999987743 2234788899
Q ss_pred ehhhhccchhhHHhHHHHHHh--------cCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcccCCCcEEE
Q 003795 488 VEIYVGVGASRVRSLYQEAKD--------NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVIT 559 (795)
Q Consensus 488 ~~~~~g~~~~~l~~lf~~ar~--------~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlV 559 (795)
.++|+|+++.+++.+|..|.. ..-.|+++||||+++..|+...++ ....+.++|+||.-||+...-.|++|
T Consensus 294 L~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~-TGVhD~VVNQLLsKmDGVeqLNNILV 372 (744)
T KOG0741|consen 294 LNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGS-TGVHDTVVNQLLSKMDGVEQLNNILV 372 (744)
T ss_pred HHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCC-CCccHHHHHHHHHhcccHHhhhcEEE
Confidence 999999999999999988743 123489999999999998865543 33456799999999999999999999
Q ss_pred EeccCCCCCCCccccCCCcccceecCCCCCHHHHHHHHHHHHccC----CCCChhhHHHHHhhCCCCcHHHHHHHHHHHH
Q 003795 560 IASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKK----PMADDVDYLAVASMTDGMVGAELANIVEVAA 635 (795)
Q Consensus 560 IatTN~~d~LdpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~----~~~~d~dl~~LA~~t~G~sgadL~~lv~~A~ 635 (795)
|+-||+.|.||.||+|||||..++++.+||.+.|.+|++.|.++. .+.+++|+..||..|..|||++|..+++.|.
T Consensus 373 IGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVksA~ 452 (744)
T KOG0741|consen 373 IGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLVKSAQ 452 (744)
T ss_pred EeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998765 4678999999999999999999999999998
Q ss_pred HHHHHcC---------------CCccCHHHHHHHHH
Q 003795 636 INMMRDG---------------RTEITTDDLLQAAQ 656 (795)
Q Consensus 636 ~~A~~~~---------------~~~It~edl~~Al~ 656 (795)
..|.-+. +-.|+++||..|++
T Consensus 453 S~A~nR~vk~~~~~~~~~~~~e~lkV~r~DFl~aL~ 488 (744)
T KOG0741|consen 453 SFAMNRHVKAGGKVEVDPVAIENLKVTRGDFLNALE 488 (744)
T ss_pred HHHHHhhhccCcceecCchhhhheeecHHHHHHHHH
Confidence 8776541 13589999999998
No 40
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.94 E-value=3.7e-26 Score=275.53 Aligned_cols=243 Identities=45% Similarity=0.774 Sum_probs=216.4
Q ss_pred ccccccCccCchHHHHHHHHHHHh-ccccccccccCcccCCceEEECCCCCchhHHHHHhhhhccccEEEeeccceehhh
Q 003795 413 VDVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIY 491 (795)
Q Consensus 413 ~~~~f~~~~gl~~~~~~l~~lv~~-~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~se~~~~~ 491 (795)
..+.|+++.|+++.+..+.+++.. +.++..+..+|+..+.|++|+||||||||+|+++||++++.+++.++++++...|
T Consensus 173 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~~ 252 (733)
T TIGR01243 173 PKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSKY 252 (733)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhccc
Confidence 568899999999999999998875 5677888999999999999999999999999999999999999999999999999
Q ss_pred hccchhhHHhHHHHHHhcCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcccCCCcEEEEeccCCCCCCCc
Q 003795 492 VGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDP 571 (795)
Q Consensus 492 ~g~~~~~l~~lf~~ar~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVIatTN~~d~Ldp 571 (795)
.|.....++.+|+.+....|+++||||+|.+.+.+.. ..++..+.+++.|+..|+++....+++||++||.++.+|+
T Consensus 253 ~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~---~~~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~~~~ld~ 329 (733)
T TIGR01243 253 YGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREE---VTGEVEKRVVAQLLTLMDGLKGRGRVIVIGATNRPDALDP 329 (733)
T ss_pred ccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccC---CcchHHHHHHHHHHHHhhccccCCCEEEEeecCChhhcCH
Confidence 9988888999999999999999999999999876532 2334445688899999999888889999999999999999
Q ss_pred cccCCCcccceecCCCCCHHHHHHHHHHHHccCCCCChhhHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcC---------
Q 003795 572 ALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDG--------- 642 (795)
Q Consensus 572 aLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~~~~~d~dl~~LA~~t~G~sgadL~~lv~~A~~~A~~~~--------- 642 (795)
+++++|||++.+.++.|+.++|.+|++.+.+...+..+.++..++..+.||+++||..+++.|+..+.++.
T Consensus 330 al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~gadl~~l~~~a~~~al~r~~~~~~~~~~ 409 (733)
T TIGR01243 330 ALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLAALAKEAAMAALRRFIREGKINFE 409 (733)
T ss_pred HHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhccccccc
Confidence 99999999999999999999999999999998888888899999999999999999999999998776541
Q ss_pred ----------CCccCHHHHHHHHHHH
Q 003795 643 ----------RTEITTDDLLQAAQIE 658 (795)
Q Consensus 643 ----------~~~It~edl~~Al~~~ 658 (795)
...++.+|+..|+...
T Consensus 410 ~~~i~~~~~~~~~v~~~df~~Al~~v 435 (733)
T TIGR01243 410 AEEIPAEVLKELKVTMKDFMEALKMV 435 (733)
T ss_pred cccccchhcccccccHHHHHHHHhhc
Confidence 1247889999988743
No 41
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.94 E-value=4e-25 Score=265.52 Aligned_cols=457 Identities=18% Similarity=0.259 Sum_probs=298.2
Q ss_pred hhhhcccccccceeecccCCccccccccceEEeecCcceeeeccCCcccchhhh-hcccccccccccccccCCCCCCCCC
Q 003795 127 TEIFSLKDEGKLKHVIKSPSGSLRQKAEPVLVVLEDSRVLRTVLPSLDSNRKFW-ESWDELKIDSLCVNAYTPPLKKPEV 205 (795)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (795)
.+||+++++++|.++.++|||++++.++|+ .|..+-++....-|| +.-+.+.- ++.+..+.
T Consensus 66 ~dLy~VGtla~I~~~~~l~DG~~~Ilv~Gl---------~RfrI~~~~~~~py~~A~Ve~l~~---------~~~~~~e~ 127 (784)
T PRK10787 66 NDLFTVGTVASILQMLKLPDGTVKVLVEGL---------QRARISALSDNGEHFSAKAEYLES---------PTIDEREQ 127 (784)
T ss_pred ccccCccEEEEEEEeeECCCCeEEEEEEEE---------EEEEEEEEEcCCCCEEEEEEEecC---------CCCCchHH
Confidence 579999999999999999999999999999 777776665554443 33222211 11111111
Q ss_pred CC----------cccccccccCcccccccCCCchhhHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 003795 206 PN----------PYLGFLWRVPASMLSTFRPKKESKRAAEIRRAREELKRQRKEELEKMREESEMMEKAMDMQKKEEERR 275 (795)
Q Consensus 206 ~~----------~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~k~eld~~~~~~~~le~e~~~l~~e~~~~ 275 (795)
.. .|+.....++++++..+.+.+.|.+|+|.+|+.+.+...+||+|.+......+++.-...|++|.+..
T Consensus 128 ~al~~~ll~~~~~~~~l~~~~~~e~~~~~~~~ddp~~Lad~iA~~Lpl~~~eKQ~LLE~~d~~eRLe~Ll~lL~~Eleil 207 (784)
T PRK10787 128 EVLVRTAISQFEGYIKLNKKIPPEVLTSLNSIDDPARLADTIAAHMPLKLADKQSVLEMSDVNERLEYLMAMMESEIDLL 207 (784)
T ss_pred HHHHHHHHHHHHHHHHhcccCCHHHHhhhhccccHHHHHHHHHHHCCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 11 45555567778878888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccceeeeechhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003795 276 RKKEIRLQKYEESLQDARDNYRYMANVWENLAKDSTVATGLGIVFFVIFYRTVVLNYRRQKKDYEDRLKIEKAEREERKK 355 (795)
Q Consensus 276 ~~~~~rl~~l~~el~~l~~~~~~l~~~w~~ek~~~~~i~~l~~~~~l~~Ykgny~~y~~~~e~~e~~~~~ek~~e~~~~e 355 (795)
+.+.+...++++++++.|++| -|++|-+.-++.+..-.+- ....+.|+..++. ...-.+-
T Consensus 208 ~l~~~I~~~v~~~~~k~q~e~-~lreq~~~i~~elg~~~~~---------~~~~~~~~~~~~~----------~~~~~~~ 267 (784)
T PRK10787 208 QVEKRIRNRVKKQMEKSQREY-YLNEQMKAIQKELGEMDDA---------PDENEALKRKIDA----------AKMPKEA 267 (784)
T ss_pred HHHHHHHHHHHHHHhhhhhhh-cchhhhhhhcccccCCCcc---------hhHHHHHHHHHHh----------cCCCHHH
Confidence 988889999999999999999 5565555443332211111 1222223222220 0111222
Q ss_pred HHHHHHHHhhhhccchhhhhhhhhcCchHHHhhchhhhHHHHHHHhcCCCCcccccCcc------ccccCccCchHHHHH
Q 003795 356 LRQLERELEGLEGADDEIEQGEAEQNPHLKMAMQFMKSGARVRRAYGKGLPQYLERGVD------VKFSDVAGLGKIRLE 429 (795)
Q Consensus 356 i~~Lekele~~~~~~~~~~~~~~~~~~~~k~~v~~~~~~~~vsr~tgipv~~~~~~~~~------~~f~~~~gl~~~~~~ 429 (795)
.+...+++.+++.-.. .. ....-+..-+.+.+.+||........+ +.-.++.|+.+++..
T Consensus 268 ~~~~~~e~~~~~~~~~--------~~------~e~~~~~~yl~~~~~~pw~~~~~~~~~~~~~~~~l~~~~~g~~~vK~~ 333 (784)
T PRK10787 268 KEKAEAELQKLKMMSP--------MS------AEATVVRGYIDWMVQVPWNARSKVKKDLRQAQEILDTDHYGLERVKDR 333 (784)
T ss_pred HHHHHHHHHHHHhCCC--------CC------chHHHHHHHHHHHHhCCCCCCCcccccHHHHHHHhhhhccCHHHHHHH
Confidence 3344445554442110 00 000112233455567888776554322 223458899999987
Q ss_pred HHHHHHhccccccccccCcccCCceEEECCCCCchhHHHHHhhhhccccEEEeeccceeh---------hhhccchhhHH
Q 003795 430 LEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVE---------IYVGVGASRVR 500 (795)
Q Consensus 430 l~~lv~~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~se~~~---------~~~g~~~~~l~ 500 (795)
+.+........ .. .....++|+||||+|||++++.+|+.++.++++++++...+ .|.|...+.+.
T Consensus 334 i~~~l~~~~~~---~~---~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~~~~~g~~~G~~~ 407 (784)
T PRK10787 334 ILEYLAVQSRV---NK---IKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLI 407 (784)
T ss_pred HHHHHHHHHhc---cc---CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccchhccCCCCCcHHH
Confidence 77655533211 10 01123899999999999999999999999999998876543 26666666655
Q ss_pred hHHHHHHhcCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhc-----c--------cCCCcEEEEeccCCCC
Q 003795 501 SLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDG-----F--------EGRGNVITIASTNRPD 567 (795)
Q Consensus 501 ~lf~~ar~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~-----~--------~~~~~VlVIatTN~~d 567 (795)
..+..+....| +++|||+|.+.....+ .....|+..+|. + .+-+++++|+|+|..
T Consensus 408 ~~l~~~~~~~~-villDEidk~~~~~~g----------~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~- 475 (784)
T PRK10787 408 QKMAKVGVKNP-LFLLDEIDKMSSDMRG----------DPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSM- 475 (784)
T ss_pred HHHHhcCCCCC-EEEEEChhhcccccCC----------CHHHHHHHHhccccEEEEecccccccccCCceEEEEcCCCC-
Confidence 55555544455 8999999998754211 145667766663 1 133789999999998
Q ss_pred CCCccccCCCcccceecCCCCCHHHHHHHHHHHHccC-----CCC------ChhhHHHHHh-hCCCCcHHHHHHHHHHHH
Q 003795 568 ILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKK-----PMA------DDVDYLAVAS-MTDGMVGAELANIVEVAA 635 (795)
Q Consensus 568 ~LdpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~-----~~~------~d~dl~~LA~-~t~G~sgadL~~lv~~A~ 635 (795)
.|+|+|++ ||. .|.+..++.++..+|++.++... ... .+.-+..++. ++..+-.+.|..++...+
T Consensus 476 ~i~~aLl~--R~~-ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~~yt~e~GaR~LeR~I~~i~ 552 (784)
T PRK10787 476 NIPAPLLD--RME-VIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRSLEREISKLC 552 (784)
T ss_pred CCCHHHhc--cee-eeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHHhCCcccCCcHHHHHHHHHH
Confidence 59999999 996 89999999999999999888421 111 1112333443 333444455555544433
Q ss_pred HH----HHHcCC---CccCHHHHHHHHH
Q 003795 636 IN----MMRDGR---TEITTDDLLQAAQ 656 (795)
Q Consensus 636 ~~----A~~~~~---~~It~edl~~Al~ 656 (795)
.. ....+. ..|+.+++.+.+.
T Consensus 553 r~~l~~~~~~~~~~~v~v~~~~~~~~lg 580 (784)
T PRK10787 553 RKAVKQLLLDKSLKHIEINGDNLHDYLG 580 (784)
T ss_pred HHHHHHHHhcCCCceeeecHHHHHHHhC
Confidence 33 222222 3578888877765
No 42
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.94 E-value=2.6e-25 Score=271.29 Aligned_cols=396 Identities=21% Similarity=0.252 Sum_probs=273.2
Q ss_pred CcccccccccCcccccccCCCchhhHHHHHHHHHHHHHHHhH-HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003795 207 NPYLGFLWRVPASMLSTFRPKKESKRAAEIRRAREELKRQRK-EELEKMREESEMMEKAMDMQKKEEERRRKKEIRLQKY 285 (795)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~k-~eld~~~~~~~~le~e~~~l~~e~~~~~~~~~rl~~l 285 (795)
+..+..+-.++++|++.+..||+|.+|+|+++|+..++...+ ++++++.+++..++.++.++.++.+..... |++++
T Consensus 362 d~~i~~~~~ls~~yi~~r~lPdkAidlld~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 439 (852)
T TIGR03346 362 DPAIVAAATLSHRYITDRFLPDKAIDLIDEAAARIRMEIDSKPEELDELDRRIIQLEIEREALKKEKDEASKE--RLEDL 439 (852)
T ss_pred HHHHHHHHHhccccccccCCchHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhcchhHHHH--HHHHH
Confidence 345556678899999999999999999999999998875443 568888889999999888887765544444 88999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccceeeeechhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003795 286 EESLQDARDNYRYMANVWENLAKDSTVATGLGIVFFVIFYRTVVLNYRRQKKDYEDRLKIEKAEREERKKLRQLERELEG 365 (795)
Q Consensus 286 ~~el~~l~~~~~~l~~~w~~ek~~~~~i~~l~~~~~l~~Ykgny~~y~~~~e~~e~~~~~ek~~e~~~~ei~~Lekele~ 365 (795)
++++++++.++..+...|..++..++.+..+ ...+.......++.++..+..+..+..+..++.+++.+..
T Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (852)
T TIGR03346 440 EKELAELEEEYADLEEQWKAEKAAIQGIQQI---------KEEIEQVRLELEQAEREGDLAKAAELQYGKLPELEKRLQA 510 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHhhhhHHHHHHhhhcchHHHHHHHHH
Confidence 9999999999999999999999988887777 6665555544454455555555555556666666666654
Q ss_pred hhccchhhhhhhhhcCchHHHhhchhhhHHHHHHHhcCCCCcccccCccccccCccCchHHHHHHHHHHHhccccccccc
Q 003795 366 LEGADDEIEQGEAEQNPHLKMAMQFMKSGARVRRAYGKGLPQYLERGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRR 445 (795)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~k~~v~~~~~~~~vsr~tgipv~~~~~~~~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~ 445 (795)
.+..... . .........++...++.++++|||+|+..+...+.....+....+.+.+.++..++..+........
T Consensus 511 ~~~~~~~----~-~~~~l~~~~v~~~~i~~v~~~~tgip~~~~~~~e~~~l~~l~~~l~~~v~GQ~~av~~v~~~i~~~~ 585 (852)
T TIGR03346 511 AEAKLGE----E-TKPRLLREEVTAEEIAEVVSRWTGIPVSKMLEGEREKLLHMEEVLHERVVGQDEAVEAVSDAIRRSR 585 (852)
T ss_pred HHHHhhh----c-cccccccCCcCHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHh
Confidence 4321110 0 0122344567888999999999999998877665543332222233333344444443333322333
Q ss_pred cCccc---C-CceEEECCCCCchhHHHHHhhhhc---cccEEEeeccceehh------------hhccchhhHHhHHHHH
Q 003795 446 RGVRI---P-GGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEI------------YVGVGASRVRSLYQEA 506 (795)
Q Consensus 446 ~gl~i---~-~giLL~GPpGtGKTtLakaLA~el---~~~~~~is~se~~~~------------~~g~~~~~l~~lf~~a 506 (795)
.|+.. | ..++|+||+|||||++|++||..+ +.++++++++++.+. |+|.... ..+.+.+
T Consensus 586 ~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~~~l~g~~~g~~g~~~~--g~l~~~v 663 (852)
T TIGR03346 586 AGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSVARLIGAPPGYVGYEEG--GQLTEAV 663 (852)
T ss_pred ccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchHHHhcCCCCCccCcccc--cHHHHHH
Confidence 44432 2 348999999999999999999976 468899999887543 2332222 3466667
Q ss_pred HhcCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcc---------cCCCcEEEEeccCCCC----------
Q 003795 507 KDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGF---------EGRGNVITIASTNRPD---------- 567 (795)
Q Consensus 507 r~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~---------~~~~~VlVIatTN~~d---------- 567 (795)
+..+.+|++||||+.+.+. +++.|++.++.- .+..+.+||+|||...
T Consensus 664 ~~~p~~vlllDeieka~~~--------------v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~g~~~~~~~~~~~ 729 (852)
T TIGR03346 664 RRKPYSVVLFDEVEKAHPD--------------VFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGSQFIQELAGGD 729 (852)
T ss_pred HcCCCcEEEEeccccCCHH--------------HHHHHHHHHhcCceecCCCeEEecCCcEEEEeCCcchHhHhhhcccc
Confidence 7778889999999998765 788888888642 1246789999999732
Q ss_pred ---------------CCCccccCCCcccceecCCCCCHHHHHHHHHHHHccC-------CCC---ChhhHHHHHhhC--C
Q 003795 568 ---------------ILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKK-------PMA---DDVDYLAVASMT--D 620 (795)
Q Consensus 568 ---------------~LdpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~-------~~~---~d~dl~~LA~~t--~ 620 (795)
.+.|+|+. |+|.++.|.+++.+...+|+...+... .+. ++.....|+... .
T Consensus 730 ~~~~~~~~~~~~~~~~F~pel~~--Rid~IivF~PL~~e~l~~I~~l~L~~l~~~l~~~~~~l~i~~~a~~~L~~~~~~~ 807 (852)
T TIGR03346 730 DYEEMREAVMEVLRAHFRPEFLN--RIDEIVVFHPLGREQIARIVEIQLGRLRKRLAERKITLELSDAALDFLAEAGYDP 807 (852)
T ss_pred cHHHHHHHHHHHHHhhcCHHHhc--CcCeEEecCCcCHHHHHHHHHHHHHHHHHHHHHCCCeecCCHHHHHHHHHhCCCC
Confidence 14577877 999999999999999999998766421 111 222244455442 2
Q ss_pred CCcHHHHHHHHHHHHH
Q 003795 621 GMVGAELANIVEVAAI 636 (795)
Q Consensus 621 G~sgadL~~lv~~A~~ 636 (795)
.+..+.|.++++....
T Consensus 808 ~~gaR~L~~~i~~~i~ 823 (852)
T TIGR03346 808 VYGARPLKRAIQREIE 823 (852)
T ss_pred CCCchhHHHHHHHHHH
Confidence 4556677777665553
No 43
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=6.2e-26 Score=269.49 Aligned_cols=229 Identities=35% Similarity=0.615 Sum_probs=200.2
Q ss_pred cCccccccCccCchHHHHHHHHHHHh-ccccccccccCcccCCceEEECCCCCchhHHHHHhhhhc-----cccEEEeec
Q 003795 411 RGVDVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEA-----GVNFFSISA 484 (795)
Q Consensus 411 ~~~~~~f~~~~gl~~~~~~l~~lv~~-~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el-----~~~~~~is~ 484 (795)
....+.|++++|++.++..+++.+.. +..++.|.++++.+|+|+||+||||||||..|+++|..+ ...|+.-++
T Consensus 258 ~~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkg 337 (1080)
T KOG0732|consen 258 VDSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKG 337 (1080)
T ss_pred hhcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcC
Confidence 34678899999999999999998875 567889999999999999999999999999999999977 345555667
Q ss_pred cceehhhhccchhhHHhHHHHHHhcCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcccCCCcEEEEeccC
Q 003795 485 SQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTN 564 (795)
Q Consensus 485 se~~~~~~g~~~~~l~~lf~~ar~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVIatTN 564 (795)
.+..+.|+|..+..++.+|+.|+...|+|+|+||||.+++.|.. -..+....++..||..|||+..++.|+||+|||
T Consensus 338 aD~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSs---kqEqih~SIvSTLLaLmdGldsRgqVvvigATn 414 (1080)
T KOG0732|consen 338 ADCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSS---KQEQIHASIVSTLLALMDGLDSRGQVVVIGATN 414 (1080)
T ss_pred chhhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccc---hHHHhhhhHHHHHHHhccCCCCCCceEEEcccC
Confidence 77888899999999999999999999999999999999887632 122333457888999999999999999999999
Q ss_pred CCCCCCccccCCCcccceecCCCCCHHHHHHHHHHHHccCCC-CChhhHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcC
Q 003795 565 RPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPM-ADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDG 642 (795)
Q Consensus 565 ~~d~LdpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~~~-~~d~dl~~LA~~t~G~sgadL~~lv~~A~~~A~~~~ 642 (795)
+++.+||+++||||||+.++|+.|+.+.|..|+..|.++-.- ....-+..+|..|.||.|+||..+|.+|++.+.++.
T Consensus 415 Rpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLCTeAal~~~~r~ 493 (1080)
T KOG0732|consen 415 RPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALCTEAALIALRRS 493 (1080)
T ss_pred CccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHHHHHhhhhhccc
Confidence 999999999999999999999999999999999999876532 223347789999999999999999999999998764
No 44
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.93 E-value=6e-25 Score=266.60 Aligned_cols=384 Identities=18% Similarity=0.210 Sum_probs=261.1
Q ss_pred CCCCcccccccccCcccccccCCCchhhHHHHHHHHHHHHHHHhH-HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003795 204 EVPNPYLGFLWRVPASMLSTFRPKKESKRAAEIRRAREELKRQRK-EELEKMREESEMMEKAMDMQKKEEERRRKKEIRL 282 (795)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~k-~eld~~~~~~~~le~e~~~l~~e~~~~~~~~~rl 282 (795)
.+++..+..+-.++.+|+..++.||++.+|+|++|++..+++... .+++.+.+++..++.+...+.++.........+.
T Consensus 373 ~i~d~al~~~~~ls~ryi~~r~LPDKAIdlldea~a~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (852)
T TIGR03345 373 LILDEAVVAAVELSHRYIPGRQLPDKAVSLLDTACARVALSQNATPAALEDLRRRIAALELELDALEREAALGADHDERL 452 (852)
T ss_pred eeCHHHHHHHHHHcccccccccCccHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHhhhhccccchHHHH
Confidence 345566777889999999999999999999999999999876543 4578888888888888877765532111122366
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccceeeeechhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003795 283 QKYEESLQDARDNYRYMANVWENLAKDSTVATGLGIVFFVIFYRTVVLNYRRQKKDYEDRLKIEKAEREERKKLRQLERE 362 (795)
Q Consensus 283 ~~l~~el~~l~~~~~~l~~~w~~ek~~~~~i~~l~~~~~l~~Ykgny~~y~~~~e~~e~~~~~ek~~e~~~~ei~~Leke 362 (795)
.++++++++++++++.+...|+.|++....+..+ ...... ............+..++.++++
T Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~ 514 (852)
T TIGR03345 453 AELRAELAALEAELAALEARWQQEKELVEAILAL---------RAELEA---------DADAPADDDAALRAQLAELEAA 514 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHhhh---------cccchhhhhHHHHHHHHHHHHH
Confidence 7788999999999999999999988755443333 000000 0000011222334445555554
Q ss_pred HhhhhccchhhhhhhhhcCchHHHhhchhhhHHHHHHHhcCCCCcccccCccccccCccCchHHHHHHHHHHHhcccccc
Q 003795 363 LEGLEGADDEIEQGEAEQNPHLKMAMQFMKSGARVRRAYGKGLPQYLERGVDVKFSDVAGLGKIRLELEEIVKFFTHGEM 442 (795)
Q Consensus 363 le~~~~~~~~~~~~~~~~~~~~k~~v~~~~~~~~vsr~tgipv~~~~~~~~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~ 442 (795)
+..... ........++...+++++++|||||+..+...+.....+....+.+.+.++++++..+.....
T Consensus 515 ~~~~~~-----------~~~~~~~~v~~~~i~~vv~~~tgip~~~~~~~e~~~l~~l~~~L~~~v~GQ~~Av~~v~~~i~ 583 (852)
T TIGR03345 515 LASAQG-----------EEPLVFPEVDAQAVAEVVADWTGIPVGRMVRDEIEAVLSLPDRLAERVIGQDHALEAIAERIR 583 (852)
T ss_pred HHHHhh-----------ccccccceecHHHHHHHHHHHHCCCchhhchhHHHHHHHHHHHhcCeEcChHHHHHHHHHHHH
Confidence 443321 122334457888999999999999999887776655444444555556666666665554444
Q ss_pred ccccCccc---CCc-eEEECCCCCchhHHHHHhhhhc---cccEEEeeccceehh------------hhccchhhHHhHH
Q 003795 443 YRRRGVRI---PGG-ILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEI------------YVGVGASRVRSLY 503 (795)
Q Consensus 443 ~~~~gl~i---~~g-iLL~GPpGtGKTtLakaLA~el---~~~~~~is~se~~~~------------~~g~~~~~l~~lf 503 (795)
..+.|+.. |.| ++|+||+|||||.+|++||..+ ...++.++++++.+. |+|..... .+.
T Consensus 584 ~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~~~l~g~~~gyvg~~~~g--~L~ 661 (852)
T TIGR03345 584 TARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTVSRLKGSPPGYVGYGEGG--VLT 661 (852)
T ss_pred HHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhhccccCCCCCcccccccc--hHH
Confidence 44455543 334 8999999999999999999987 457899999987643 55554433 366
Q ss_pred HHHHhcCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhccc---------CCCcEEEEeccCCCC-------
Q 003795 504 QEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE---------GRGNVITIASTNRPD------- 567 (795)
Q Consensus 504 ~~ar~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~---------~~~~VlVIatTN~~d------- 567 (795)
+.++..+++|++||||+++++. +++.|++.++... +..+.+||+|||...
T Consensus 662 ~~v~~~p~svvllDEieka~~~--------------v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TSNlg~~~~~~~~ 727 (852)
T TIGR03345 662 EAVRRKPYSVVLLDEVEKAHPD--------------VLELFYQVFDKGVMEDGEGREIDFKNTVILLTSNAGSDLIMALC 727 (852)
T ss_pred HHHHhCCCcEEEEechhhcCHH--------------HHHHHHHHhhcceeecCCCcEEeccccEEEEeCCCchHHHHHhc
Confidence 7778888999999999988765 7888888887532 236789999998521
Q ss_pred ----------------------CCCccccCCCcccceecCCCCCHHHHHHHHHHHHccC--------CCC---ChhhHHH
Q 003795 568 ----------------------ILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKK--------PMA---DDVDYLA 614 (795)
Q Consensus 568 ----------------------~LdpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~--------~~~---~d~dl~~ 614 (795)
.+.|+|++ |++ +|.|.+.+.++...|+...+... .+. ++.-...
T Consensus 728 ~~~~~~~~~~~~~~~~~~~~~~~f~PEfln--Ri~-iI~F~pLs~e~l~~Iv~~~L~~l~~rl~~~~gi~l~i~d~a~~~ 804 (852)
T TIGR03345 728 ADPETAPDPEALLEALRPELLKVFKPAFLG--RMT-VIPYLPLDDDVLAAIVRLKLDRIARRLKENHGAELVYSEALVEH 804 (852)
T ss_pred cCcccCcchHHHHHHHHHHHHHhccHHHhc--cee-EEEeCCCCHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHH
Confidence 25678887 997 89999999999999998776442 111 2222445
Q ss_pred HHhhCCC--CcHHHHHHHHHHHH
Q 003795 615 VASMTDG--MVGAELANIVEVAA 635 (795)
Q Consensus 615 LA~~t~G--~sgadL~~lv~~A~ 635 (795)
|+....+ +-.+.|.++++.-.
T Consensus 805 La~~g~~~~~GAR~L~r~Ie~~i 827 (852)
T TIGR03345 805 IVARCTEVESGARNIDAILNQTL 827 (852)
T ss_pred HHHHcCCCCCChHHHHHHHHHHH
Confidence 5555432 44666766666543
No 45
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=5.9e-25 Score=242.89 Aligned_cols=241 Identities=34% Similarity=0.532 Sum_probs=202.4
Q ss_pred ccCccccccCccCchHHHHHHHHHHHhccc-cccccccCcc-cCCceEEECCCCCchhHHHHHhhhhccccEEEeeccce
Q 003795 410 ERGVDVKFSDVAGLGKIRLELEEIVKFFTH-GEMYRRRGVR-IPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQF 487 (795)
Q Consensus 410 ~~~~~~~f~~~~gl~~~~~~l~~lv~~~~~-~~~~~~~gl~-i~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~se~ 487 (795)
....++.|+++.|+...+..+.+++.+... +..+. |++ +++|+||.||||+|||.|+++||.+.+..|+.++.+.+
T Consensus 145 ~~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~--glr~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassL 222 (428)
T KOG0740|consen 145 DTLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFL--GLREPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSL 222 (428)
T ss_pred ccCCcccccCCcchhhHHHHhhhhhhhcccchHhhh--ccccccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHh
Confidence 445678999999999999999998887543 44443 333 34689999999999999999999999999999999999
Q ss_pred ehhhhccchhhHHhHHHHHHhcCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcccC--CCcEEEEeccCC
Q 003795 488 VEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEG--RGNVITIASTNR 565 (795)
Q Consensus 488 ~~~~~g~~~~~l~~lf~~ar~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~--~~~VlVIatTN~ 565 (795)
.+.|+|..+..++.+|.-|+...|+|+||||+|.++..| .+...+..+....+++..+++... ..+|+||+|||.
T Consensus 223 tsK~~Ge~eK~vralf~vAr~~qPsvifidEidslls~R---s~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~ 299 (428)
T KOG0740|consen 223 TSKYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKR---SDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNR 299 (428)
T ss_pred hhhccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhc---CCcccccchhhhhHHHhhhccccCCCCCeEEEEecCCC
Confidence 999999999999999999999999999999999999887 345556666777888888877543 457999999999
Q ss_pred CCCCCccccCCCcccceecCCCCCHHHHHHHHHHHHccC-CCCChhhHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcCC-
Q 003795 566 PDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKK-PMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGR- 643 (795)
Q Consensus 566 ~d~LdpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~-~~~~d~dl~~LA~~t~G~sgadL~~lv~~A~~~A~~~~~- 643 (795)
|+.+|.+++| ||..+++||+|+.+.|..+|...+.+. ....+.|+..+++.|+||++.||.++|.+|+..-.+...
T Consensus 300 P~e~Dea~~R--rf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~kea~~~p~r~~~~ 377 (428)
T KOG0740|consen 300 PWELDEAARR--RFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALCKEAAMGPLRELGG 377 (428)
T ss_pred chHHHHHHHH--HhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHHHHhhcCchhhccc
Confidence 9999999999 999999999999999999999999877 334567899999999999999999999999865443322
Q ss_pred ------------CccCHHHHHHHHHH
Q 003795 644 ------------TEITTDDLLQAAQI 657 (795)
Q Consensus 644 ------------~~It~edl~~Al~~ 657 (795)
..++..|+..++..
T Consensus 378 ~~~~~~~~~~~~r~i~~~df~~a~~~ 403 (428)
T KOG0740|consen 378 TTDLEFIDADKIRPITYPDFKNAFKN 403 (428)
T ss_pred chhhhhcchhccCCCCcchHHHHHHh
Confidence 23555666666553
No 46
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=2.6e-20 Score=211.53 Aligned_cols=326 Identities=19% Similarity=0.275 Sum_probs=229.1
Q ss_pred cCCCchhhHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003795 224 FRPKKESKRAAEIRRAREELKRQRKEELEKMREESEMMEKAMDMQKKEEERRRKKEIRLQKYEESLQDARDNYRYMANVW 303 (795)
Q Consensus 224 ~~~~~~~~~l~d~~~~~~~~~~~~k~eld~~~~~~~~le~e~~~l~~e~~~~~~~~~rl~~l~~el~~l~~~~~~l~~~w 303 (795)
....+.|.+|+|+.|+-..+...+.|++.+--..-.+|++.+..+++|.+.++.+.+.-+++|+++..-+++| -|.+|.
T Consensus 244 ~~~~~~~~~LaD~~aai~~~~~~elq~vL~~~di~~Rl~~al~llkke~e~~klq~ki~k~vE~k~~~~~r~y-lL~eQl 322 (906)
T KOG2004|consen 244 LIVEDNPIKLADFGAAISGAEFHELQEVLEETDIEKRLEKALELLKKELELAKLQQKIGKEVEEKIKQDHREY-LLREQL 322 (906)
T ss_pred HhcccChhHHHHHHHHHhccCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHH-HHHHHH
Confidence 4457899999999999999999999999998899999999999999999999888878899999999999988 566665
Q ss_pred HHhhhhhhhhhccccceeeeechhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchhhhhhhhhcCch
Q 003795 304 ENLAKDSTVATGLGIVFFVIFYRTVVLNYRRQKKDYEDRLKIEKAEREERKKLRQLERELEGLEGADDEIEQGEAEQNPH 383 (795)
Q Consensus 304 ~~ek~~~~~i~~l~~~~~l~~Ykgny~~y~~~~e~~e~~~~~ek~~e~~~~ei~~Lekele~~~~~~~~~~~~~~~~~~~ 383 (795)
..-|..+..-.+- +. ...+...++... ...-..-.+-..+|+.+++.-..
T Consensus 323 k~IKkeLg~e~Dd---------kd------~~~~~~~er~~~---~~~P~~v~kv~~eEl~kL~~le~------------ 372 (906)
T KOG2004|consen 323 KAIKKELGIEKDD---------KD------ALVEKFRERIKS---LKMPDHVLKVIDEELTKLKLLEP------------ 372 (906)
T ss_pred HHHHHhhCCCccc---------hh------hHHHHHHHHhhh---ccCcHHHHHHHHHHHHHHhccCc------------
Confidence 5544432211111 00 001100111111 11111222333334433321000
Q ss_pred HHHhhchhhhHHHHHHHhcCCCCcccccC------ccccccCccCchHHHHHHHHHHHhccccccccccCcccCCceEEE
Q 003795 384 LKMAMQFMKSGARVRRAYGKGLPQYLERG------VDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLC 457 (795)
Q Consensus 384 ~k~~v~~~~~~~~vsr~tgipv~~~~~~~------~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~~giLL~ 457 (795)
..-.+.-...-+.+.+.+||....... ..+.-+++.|+.+++.++-+.+..- .+......++ +||+
T Consensus 373 --~~sEfnvtrNYLdwlt~LPWgk~S~En~dl~~Ak~iLdeDHYgm~dVKeRILEfiAV~---kLrgs~qGkI---lCf~ 444 (906)
T KOG2004|consen 373 --SSSEFNVTRNYLDWLTSLPWGKSSTENLDLARAKEILDEDHYGMEDVKERILEFIAVG---KLRGSVQGKI---LCFV 444 (906)
T ss_pred --cccchhHHHHHHHHHHhCCCCCCChhhhhHHHHHHhhcccccchHHHHHHHHHHHHHH---hhcccCCCcE---EEEe
Confidence 001112233456677788887765543 3344577899999998777766532 1222222222 8999
Q ss_pred CCCCCchhHHHHHhhhhccccEEEeeccceehh---------hhccchhhHHhHHHHHHhcCCceeEhHHHHHHhhhccC
Q 003795 458 GPPGVGKTLLAKAVAGEAGVNFFSISASQFVEI---------YVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGL 528 (795)
Q Consensus 458 GPpGtGKTtLakaLA~el~~~~~~is~se~~~~---------~~g~~~~~l~~lf~~ar~~~p~Il~IDEID~l~~~r~~ 528 (795)
||||+|||+++|+||..++..|++++.+.+.+. |+|..++++-+.+..+...+| +++|||||+++....+
T Consensus 445 GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGHRRTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG~g~qG 523 (906)
T KOG2004|consen 445 GPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLGSGHQG 523 (906)
T ss_pred CCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcccceeeeccCChHHHHHHHhhCCCCc-eEEeehhhhhCCCCCC
Confidence 999999999999999999999999999887654 999999999999999999999 8999999999743221
Q ss_pred CCCCCcchHHHHHHHHHHhhhc-------------ccCCCcEEEEeccCCCCCCCccccCCCcccceecCCCCCHHHHHH
Q 003795 529 IKGSGGQERDATLNQLLVCLDG-------------FEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRME 595 (795)
Q Consensus 529 ~~~Sgge~~r~~l~~LL~~ld~-------------~~~~~~VlVIatTN~~d~LdpaLlrpgRFd~~I~~~~Pd~~eR~~ 595 (795)
+ --..||..+|- -.+-+.|+||||+|..+.||++|+. |+. +|.++-+..++...
T Consensus 524 ------D----PasALLElLDPEQNanFlDHYLdVp~DLSkVLFicTAN~idtIP~pLlD--RME-vIelsGYv~eEKv~ 590 (906)
T KOG2004|consen 524 ------D----PASALLELLDPEQNANFLDHYLDVPVDLSKVLFICTANVIDTIPPPLLD--RME-VIELSGYVAEEKVK 590 (906)
T ss_pred ------C----hHHHHHHhcChhhccchhhhccccccchhheEEEEeccccccCChhhhh--hhh-eeeccCccHHHHHH
Confidence 1 23445554442 1233679999999999999999999 987 89999999999999
Q ss_pred HHHHHHc
Q 003795 596 ILKVHAR 602 (795)
Q Consensus 596 Il~~~l~ 602 (795)
|.+.|+-
T Consensus 591 IA~~yLi 597 (906)
T KOG2004|consen 591 IAERYLI 597 (906)
T ss_pred HHHHhhh
Confidence 9998874
No 47
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.87 E-value=3.8e-21 Score=234.18 Aligned_cols=304 Identities=18% Similarity=0.187 Sum_probs=210.7
Q ss_pred CCCcccccccccCcccccccCCCchhhHHHHHHHHHHHHHHHhH-HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003795 205 VPNPYLGFLWRVPASMLSTFRPKKESKRAAEIRRAREELKRQRK-EELEKMREESEMMEKAMDMQKKEEERRRKKEIRLQ 283 (795)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~k-~eld~~~~~~~~le~e~~~l~~e~~~~~~~~~rl~ 283 (795)
++...+..+..++.+|+..+..||++.+|+|.++|+..+..... ++++++.+++.+++.+..++.++.+. ++..
T Consensus 365 i~deal~~i~~ls~~yi~~r~lPdkaidlld~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~ 439 (821)
T CHL00095 365 ISDKALEAAAKLSDQYIADRFLPDKAIDLLDEAGSRVRLINSRLPPAARELDKELREILKDKDEAIREQDF-----ETAK 439 (821)
T ss_pred CCHHHHHHHHHHhhccCccccCchHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhCcch-----HHHH
Confidence 45566777888899999999999999999999999998865332 34455555555555444444333211 1333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccceeeeechhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003795 284 KYEESLQDARDNYRYMANVWENLAKDSTVATGLGIVFFVIFYRTVVLNYRRQKKDYEDRLKIEKAEREERKKLRQLEREL 363 (795)
Q Consensus 284 ~l~~el~~l~~~~~~l~~~w~~ek~~~~~i~~l~~~~~l~~Ykgny~~y~~~~e~~e~~~~~ek~~e~~~~ei~~Lekel 363 (795)
+++.+..++++++..+...|..+++
T Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------------------- 464 (821)
T CHL00095 440 QLRDREMEVRAQIAAIIQSKKTEEE------------------------------------------------------- 464 (821)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhc-------------------------------------------------------
Confidence 4444444555555555555544210
Q ss_pred hhhhccchhhhhhhhhcCchHHHhhchhhhHHHHHHHhcCCCCcccccCccccccCccCchHHHHHHHHHHHhccccccc
Q 003795 364 EGLEGADDEIEQGEAEQNPHLKMAMQFMKSGARVRRAYGKGLPQYLERGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMY 443 (795)
Q Consensus 364 e~~~~~~~~~~~~~~~~~~~~k~~v~~~~~~~~vsr~tgipv~~~~~~~~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~ 443 (795)
.......++...+++++++|||||+..+...+.....+....+.+.+.++++++..+......
T Consensus 465 -----------------~~~~~~~v~~~~i~~~~~~~tgip~~~~~~~~~~~l~~l~~~L~~~v~GQ~~ai~~l~~~i~~ 527 (821)
T CHL00095 465 -----------------KRLEVPVVTEEDIAEIVSAWTGIPVNKLTKSESEKLLHMEETLHKRIIGQDEAVVAVSKAIRR 527 (821)
T ss_pred -----------------ccccCCccCHHHHHHHHHHHHCCCchhhchhHHHHHHHHHHHhcCcCcChHHHHHHHHHHHHH
Confidence 000113477788999999999999998887766655554555566666666666665554444
Q ss_pred cccCcccC---C-ceEEECCCCCchhHHHHHhhhhc---cccEEEeeccceehh------------hhccchhhHHhHHH
Q 003795 444 RRRGVRIP---G-GILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEI------------YVGVGASRVRSLYQ 504 (795)
Q Consensus 444 ~~~gl~i~---~-giLL~GPpGtGKTtLakaLA~el---~~~~~~is~se~~~~------------~~g~~~~~l~~lf~ 504 (795)
.+.|+..| . .++|+||+|||||+||++||..+ +.++++++++++.+. |+|.... ..+.+
T Consensus 528 ~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~~l~g~~~gyvg~~~~--~~l~~ 605 (821)
T CHL00095 528 ARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVSKLIGSPPGYVGYNEG--GQLTE 605 (821)
T ss_pred HhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHHHhcCCCCcccCcCcc--chHHH
Confidence 55555433 2 38999999999999999999976 467899999887542 3333332 34677
Q ss_pred HHHhcCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcc---------cCCCcEEEEeccCCCCC-------
Q 003795 505 EAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGF---------EGRGNVITIASTNRPDI------- 568 (795)
Q Consensus 505 ~ar~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~---------~~~~~VlVIatTN~~d~------- 568 (795)
.++..+++|++|||+|++.+. +++.|++.++.. .+..+++||+|||....
T Consensus 606 ~~~~~p~~VvllDeieka~~~--------------v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn~g~~~i~~~~~ 671 (821)
T CHL00095 606 AVRKKPYTVVLFDEIEKAHPD--------------IFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNLGSKVIETNSG 671 (821)
T ss_pred HHHhCCCeEEEECChhhCCHH--------------HHHHHHHHhccCceecCCCcEEecCceEEEEeCCcchHHHHhhcc
Confidence 788888899999999998766 788888888852 12468999999985321
Q ss_pred ------------------------------CCccccCCCcccceecCCCCCHHHHHHHHHHHHcc
Q 003795 569 ------------------------------LDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARK 603 (795)
Q Consensus 569 ------------------------------LdpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~ 603 (795)
+.|+|++ |+|.+|.|.+.+.++...|+...+.+
T Consensus 672 ~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~pefln--Rid~ii~F~pL~~~~l~~Iv~~~l~~ 734 (821)
T CHL00095 672 GLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLN--RLDEIIVFRQLTKNDVWEIAEIMLKN 734 (821)
T ss_pred ccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhc--cCCeEEEeCCCCHHHHHHHHHHHHHH
Confidence 3356777 99999999999999999999877753
No 48
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=2.5e-18 Score=184.83 Aligned_cols=197 Identities=25% Similarity=0.400 Sum_probs=149.2
Q ss_pred CceEEECCCCCchhHHHHHhhhhccccEEEeeccceehhhhccchhhHHhHHHHHHhcCC-ceeEhHHHHHHhhhccCCC
Q 003795 452 GGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAP-SVVFIDELDAVGRERGLIK 530 (795)
Q Consensus 452 ~giLL~GPpGtGKTtLakaLA~el~~~~~~is~se~~~~~~g~~~~~l~~lf~~ar~~~p-~Il~IDEID~l~~~r~~~~ 530 (795)
++|+||||||||||.+|+-||...|.++-.+++++..-. -.+....+..+|+.+....- -++||||.|.++..|....
T Consensus 385 RNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPl-G~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnkty 463 (630)
T KOG0742|consen 385 RNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPL-GAQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKTY 463 (630)
T ss_pred hheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCcccc-chHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhchhh
Confidence 559999999999999999999999999988888875432 22344567889999987554 4689999999998875432
Q ss_pred CCCcchHHHHHHHHHHhhhcccCCCcEEEEeccCCCCCCCccccCCCcccceecCCCCCHHHHHHHHHHHHccCCCC---
Q 003795 531 GSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA--- 607 (795)
Q Consensus 531 ~Sgge~~r~~l~~LL~~ld~~~~~~~VlVIatTN~~d~LdpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~~~~--- 607 (795)
-++-.+..+|.||-.-. .....++++.+||.|..+|.++-. |||.+|+||+|..++|..|+..|+.+....
T Consensus 464 --mSEaqRsaLNAlLfRTG--dqSrdivLvlAtNrpgdlDsAV~D--Ride~veFpLPGeEERfkll~lYlnkyi~~~~~ 537 (630)
T KOG0742|consen 464 --MSEAQRSALNALLFRTG--DQSRDIVLVLATNRPGDLDSAVND--RIDEVVEFPLPGEEERFKLLNLYLNKYILKPAT 537 (630)
T ss_pred --hcHHHHHHHHHHHHHhc--ccccceEEEeccCCccchhHHHHh--hhhheeecCCCChHHHHHHHHHHHHHHhcCcCC
Confidence 34566779999985443 445678889999999999999988 999999999999999999999988654211
Q ss_pred ------------------------ChhhHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHH
Q 003795 608 ------------------------DDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAA 655 (795)
Q Consensus 608 ------------------------~d~dl~~LA~~t~G~sgadL~~lv~~A~~~A~~~~~~~It~edl~~Al 655 (795)
.+..+...|..|.||||++|..|+-.....+.-.....++..-+.+.+
T Consensus 538 ~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfSGREiakLva~vQAavYgsedcvLd~~lf~e~v 609 (630)
T KOG0742|consen 538 SGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFSGREIAKLVASVQAAVYGSEDCVLDEALFDERV 609 (630)
T ss_pred CCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhcccchhhHHHHHHHHH
Confidence 011256778999999999999998654433332333344554444443
No 49
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.76 E-value=1e-18 Score=164.69 Aligned_cols=130 Identities=45% Similarity=0.718 Sum_probs=114.7
Q ss_pred eEEECCCCCchhHHHHHhhhhccccEEEeeccceehhhhccchhhHHhHHHHHHhcC-CceeEhHHHHHHhhhccCCCCC
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNA-PSVVFIDELDAVGRERGLIKGS 532 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el~~~~~~is~se~~~~~~g~~~~~l~~lf~~ar~~~-p~Il~IDEID~l~~~r~~~~~S 532 (795)
|+|+||||||||++++.+|..++.+++.++++++...+.+.....+..+|+.+.... |+|++|||+|.+.... ..+
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~---~~~ 77 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKS---QPS 77 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHC---STS
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccc---ccc
Confidence 689999999999999999999999999999999988888888889999999998887 9999999999998775 234
Q ss_pred CcchHHHHHHHHHHhhhcccCC-CcEEEEeccCCCCCCCccccCCCcccceecCCC
Q 003795 533 GGQERDATLNQLLVCLDGFEGR-GNVITIASTNRPDILDPALVRPGRFDRKIFIPK 587 (795)
Q Consensus 533 gge~~r~~l~~LL~~ld~~~~~-~~VlVIatTN~~d~LdpaLlrpgRFd~~I~~~~ 587 (795)
........++.|+..++..... .+++||++||.++.+++++++ +||+..|+++.
T Consensus 78 ~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~~ 132 (132)
T PF00004_consen 78 SSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLR-SRFDRRIEFPL 132 (132)
T ss_dssp SSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-S
T ss_pred cccccccccceeeecccccccccccceeEEeeCChhhCCHhHHh-CCCcEEEEcCC
Confidence 5566677889999999977654 569999999999999999998 89999999873
No 50
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=2e-18 Score=190.01 Aligned_cols=212 Identities=23% Similarity=0.364 Sum_probs=155.7
Q ss_pred HHHHHHHhccccccccccCcccCCceEEECCCCCchhHHHHHhhhhccccEEEeeccceehhhhccchhhHHhHHHHHHh
Q 003795 429 ELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKD 508 (795)
Q Consensus 429 ~l~~lv~~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~se~~~~~~g~~~~~l~~lf~~ar~ 508 (795)
-++++..+.....-|++.|....+|.||+||||||||+++-|||+.++..++.++.++... ... ++.+.-...
T Consensus 213 I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~-----n~d-Lr~LL~~t~- 285 (457)
T KOG0743|consen 213 IIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKL-----DSD-LRHLLLATP- 285 (457)
T ss_pred HHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccC-----cHH-HHHHHHhCC-
Confidence 3566777788889999999999999999999999999999999999999999888876322 222 566654443
Q ss_pred cCCceeEhHHHHHHhhhccCCCC--CCc--chHHHHHHHHHHhhhcccCCC--cEEEEeccCCCCCCCccccCCCcccce
Q 003795 509 NAPSVVFIDELDAVGRERGLIKG--SGG--QERDATLNQLLVCLDGFEGRG--NVITIASTNRPDILDPALVRPGRFDRK 582 (795)
Q Consensus 509 ~~p~Il~IDEID~l~~~r~~~~~--Sgg--e~~r~~l~~LL~~ld~~~~~~--~VlVIatTN~~d~LdpaLlrpgRFd~~ 582 (795)
+-+||+|++||.....+.-... .+. ...+.++..||..+||+.... .-|||+|||+.+.|||||+||||+|.+
T Consensus 286 -~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmh 364 (457)
T KOG0743|consen 286 -NKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMH 364 (457)
T ss_pred -CCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeE
Confidence 3479999999987543221111 122 235579999999999987765 679999999999999999999999999
Q ss_pred ecCCCCCHHHHHHHHHHHHccCCCCChhhHHHHHhhCCC--CcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Q 003795 583 IFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDG--MVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQ 656 (795)
Q Consensus 583 I~~~~Pd~~eR~~Il~~~l~~~~~~~d~dl~~LA~~t~G--~sgadL~~lv~~A~~~A~~~~~~~It~edl~~Al~ 656 (795)
|+++.-+..+-..++..++.-.. +..-+..+.+...+ .|+|++...+ ...+....+..+.+.+++.
T Consensus 365 I~mgyCtf~~fK~La~nYL~~~~--~h~L~~eie~l~~~~~~tPA~V~e~l------m~~~~dad~~lk~Lv~~l~ 432 (457)
T KOG0743|consen 365 IYMGYCTFEAFKTLASNYLGIEE--DHRLFDEIERLIEETEVTPAQVAEEL------MKNKNDADVALKGLVEALE 432 (457)
T ss_pred EEcCCCCHHHHHHHHHHhcCCCC--CcchhHHHHHHhhcCccCHHHHHHHH------hhccccHHHHHHHHHHHHH
Confidence 99999999999999999987532 12223334433333 6899986542 1111123344555555555
No 51
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=4.1e-19 Score=211.00 Aligned_cols=310 Identities=19% Similarity=0.125 Sum_probs=237.6
Q ss_pred cccccccccCcccccccCCCchhhHHHHHHHHHHHHHHHhHH-HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003795 208 PYLGFLWRVPASMLSTFRPKKESKRAAEIRRAREELKRQRKE-ELEKMREESEMMEKAMDMQKKEEERRRKKEIRLQKYE 286 (795)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~k~-eld~~~~~~~~le~e~~~l~~e~~~~~~~~~rl~~l~ 286 (795)
..+.....++++|++.+-.+|.+.++.|++++....+...++ +|+...+....++.++.+|+++.+....+ |+. .
T Consensus 377 ~a~~~a~~~s~~~~t~r~lpd~aidl~dEa~a~~~~~~~~lP~wL~~~~~~~~~~~~e~~~L~kk~d~~~h~--r~~--~ 452 (898)
T KOG1051|consen 377 ESLFSAAQLSARYITLSFLPDCAIDLEDEAAALVKSQAESLPPWLQNLERVDIKLQDEISELQKKWNQALHK--RPS--L 452 (898)
T ss_pred cccccccchhhhhcccCcCchhcccHHHHHHHHHhhhhhhCCHHHHhhhhhhhhhHHHHHHHHHhhhhhhcc--ccc--c
Confidence 556677788889999999999999999999999998665544 47777788888888888888888855555 555 7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhccccceeeeechhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 003795 287 ESLQDARDNYRYMANVWENLAKDSTVATGLGIVFFVIFYRTVVLNYRRQKKDYEDRLKIEKAEREERKKLRQLERELEGL 366 (795)
Q Consensus 287 ~el~~l~~~~~~l~~~w~~ek~~~~~i~~l~~~~~l~~Ykgny~~y~~~~e~~e~~~~~ek~~e~~~~ei~~Lekele~~ 366 (795)
+.+...+..+..+...|..++...+.+... +...+.-.- ++..++..+...+....+..++ ... .+..
T Consensus 453 ~~~~~~~~~~~~l~~~~~~~~s~~~~l~~~---------~~~~~~~~~-~~k~~r~~d~~~~~~l~~~~~p-~~~-~~~~ 520 (898)
T KOG1051|consen 453 ESLAPSKPTQQPLSASVDSERSVIEELKLK---------KNSLDRNSL-LAKAHRPNDYTRETDLRYGRIP-DEL-SEKS 520 (898)
T ss_pred ccccccccccccchhhhccchhHHhhhccc---------cCCcccchh-hhcccCCCCcchhhhccccccc-hhh-hhhc
Confidence 778888888889999999998888887665 333333332 3333444455555555555444 111 0000
Q ss_pred hccchhhhhhhhhcCchHHHhhchhhhHHHHHHHhcCCCCcccccCccccccCccCchHHHHHHHHHHHhcccccccccc
Q 003795 367 EGADDEIEQGEAEQNPHLKMAMQFMKSGARVRRAYGKGLPQYLERGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRR 446 (795)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~k~~v~~~~~~~~vsr~tgipv~~~~~~~~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~ 446 (795)
.........+..++++|+|+|+......+....+.....+++.+.++++++..+.......+.
T Consensus 521 -----------------~~~~~~~~~i~~~~s~~tgip~~~~~~~e~~~l~~L~~~L~~~V~gQ~eAv~aIa~AI~~sr~ 583 (898)
T KOG1051|consen 521 -----------------NDNQGGESDISEVVSRWTGIPVDRLAEAEAERLKKLEERLHERVIGQDEAVAAIAAAIRRSRA 583 (898)
T ss_pred -----------------ccccCCccchhhhhhhhcCCchhhhhhhHHHHHHHHHHHHHhhccchHHHHHHHHHHHHhhhc
Confidence 000116667899999999999999888877888888888999999999999999888888888
Q ss_pred CcccC--Cc-eEEECCCCCchhHHHHHhhhhc---cccEEEeeccceehh---------hhccchhhHHhHHHHHHhcCC
Q 003795 447 GVRIP--GG-ILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEI---------YVGVGASRVRSLYQEAKDNAP 511 (795)
Q Consensus 447 gl~i~--~g-iLL~GPpGtGKTtLakaLA~el---~~~~~~is~se~~~~---------~~g~~~~~l~~lf~~ar~~~p 511 (795)
|+.-| .+ ++|.||.|+|||-||++||..+ ...++++++++|.+. |+|.... ..+++.+++.++
T Consensus 584 gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evskligsp~gyvG~e~g--g~LteavrrrP~ 661 (898)
T KOG1051|consen 584 GLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSKLIGSPPGYVGKEEG--GQLTEAVKRRPY 661 (898)
T ss_pred ccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhhccCCCcccccchhH--HHHHHHHhcCCc
Confidence 88774 22 9999999999999999999976 568999999986553 5665554 468999999999
Q ss_pred ceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhccc---------CCCcEEEEeccCCC
Q 003795 512 SVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE---------GRGNVITIASTNRP 566 (795)
Q Consensus 512 ~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~---------~~~~VlVIatTN~~ 566 (795)
+||+|||||..++. +++.|++.+|... +..|+|||+|+|..
T Consensus 662 sVVLfdeIEkAh~~--------------v~n~llq~lD~GrltDs~Gr~Vd~kN~I~IMTsn~~ 711 (898)
T KOG1051|consen 662 SVVLFEEIEKAHPD--------------VLNILLQLLDRGRLTDSHGREVDFKNAIFIMTSNVG 711 (898)
T ss_pred eEEEEechhhcCHH--------------HHHHHHHHHhcCccccCCCcEeeccceEEEEecccc
Confidence 99999999999876 8888888888632 34689999999864
No 52
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.76 E-value=1.8e-17 Score=176.63 Aligned_cols=210 Identities=20% Similarity=0.316 Sum_probs=152.8
Q ss_pred ccCccCchHHHHHHHHHHHhccccccccccCcccCC---ceEEECCCCCchhHHHHHhhhhc-------cccEEEeeccc
Q 003795 417 FSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPG---GILLCGPPGVGKTLLAKAVAGEA-------GVNFFSISASQ 486 (795)
Q Consensus 417 f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~~---giLL~GPpGtGKTtLakaLA~el-------~~~~~~is~se 486 (795)
+++..|++.++..++++..++.....+...|...++ +++|+|||||||||+|+++|+.+ ...++.+++++
T Consensus 5 l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~ 84 (261)
T TIGR02881 5 LSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERAD 84 (261)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHH
Confidence 566889999999999998877554455556766554 38999999999999999999864 23677888888
Q ss_pred eehhhhccchhhHHhHHHHHHhcCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcccCCCcEEEEeccCCC
Q 003795 487 FVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRP 566 (795)
Q Consensus 487 ~~~~~~g~~~~~l~~lf~~ar~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVIatTN~~ 566 (795)
+...|+|+....+..+|+.+. ++|+||||+|.+... .........++.|+..++.. ..++++|++++..
T Consensus 85 l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~~------~~~~~~~~~i~~Ll~~~e~~--~~~~~vila~~~~ 153 (261)
T TIGR02881 85 LVGEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLARG------GEKDFGKEAIDTLVKGMEDN--RNEFVLILAGYSD 153 (261)
T ss_pred hhhhhccchHHHHHHHHHhcc---CCEEEEechhhhccC------CccchHHHHHHHHHHHHhcc--CCCEEEEecCCcc
Confidence 888899988888888887663 579999999998531 11223345788888888843 4556666665433
Q ss_pred C-----CCCccccCCCcccceecCCCCCHHHHHHHHHHHHccCCCC-ChhhHHHHHhh---------CCCCcHHHHHHHH
Q 003795 567 D-----ILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASM---------TDGMVGAELANIV 631 (795)
Q Consensus 567 d-----~LdpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~~~~-~d~dl~~LA~~---------t~G~sgadL~~lv 631 (795)
+ .++|++.+ ||+..|.|++++.+++.+|++.++...... ++..+..++.. ....+++.+.+++
T Consensus 154 ~~~~~~~~~p~L~s--Rf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n~~ 231 (261)
T TIGR02881 154 EMDYFLSLNPGLRS--RFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRNII 231 (261)
T ss_pred hhHHHHhcChHHHh--ccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHHHH
Confidence 2 47899988 999999999999999999999988765432 22123333211 1124578888888
Q ss_pred HHHHHHHH
Q 003795 632 EVAAINMM 639 (795)
Q Consensus 632 ~~A~~~A~ 639 (795)
..|.....
T Consensus 232 e~a~~~~~ 239 (261)
T TIGR02881 232 EKAIRRQA 239 (261)
T ss_pred HHHHHHHH
Confidence 88765544
No 53
>CHL00181 cbbX CbbX; Provisional
Probab=99.75 E-value=1.4e-17 Score=179.54 Aligned_cols=225 Identities=18% Similarity=0.304 Sum_probs=160.6
Q ss_pred cccCccCchHHHHHHHHHHHhccccccccccCcccCC-c--eEEECCCCCchhHHHHHhhhhcc-------ccEEEeecc
Q 003795 416 KFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPG-G--ILLCGPPGVGKTLLAKAVAGEAG-------VNFFSISAS 485 (795)
Q Consensus 416 ~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~~-g--iLL~GPpGtGKTtLakaLA~el~-------~~~~~is~s 485 (795)
.+++..|+..++..+.+++........+...|+..+. | ++|+||||||||++|+++|+.+. .+++.++.+
T Consensus 21 l~~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~ 100 (287)
T CHL00181 21 LDEELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRD 100 (287)
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHH
Confidence 3457889999999999998775555566667776653 4 89999999999999999988652 358889988
Q ss_pred ceehhhhccchhhHHhHHHHHHhcCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcccCCCcEEEEeccCC
Q 003795 486 QFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNR 565 (795)
Q Consensus 486 e~~~~~~g~~~~~l~~lf~~ar~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVIatTN~ 565 (795)
++...|+|+.......+++.+ .++|+||||++.+...+ +........+..|+..|+. ...+++||++++.
T Consensus 101 ~l~~~~~g~~~~~~~~~l~~a---~ggVLfIDE~~~l~~~~-----~~~~~~~e~~~~L~~~me~--~~~~~~vI~ag~~ 170 (287)
T CHL00181 101 DLVGQYIGHTAPKTKEVLKKA---MGGVLFIDEAYYLYKPD-----NERDYGSEAIEILLQVMEN--QRDDLVVIFAGYK 170 (287)
T ss_pred HHHHHHhccchHHHHHHHHHc---cCCEEEEEccchhccCC-----CccchHHHHHHHHHHHHhc--CCCCEEEEEeCCc
Confidence 888889988777666677665 35799999999885431 1223345678888888874 3466888888764
Q ss_pred CC-----CCCccccCCCcccceecCCCCCHHHHHHHHHHHHccCCC--CChhh---HHHHHhh--CCCCc-HHHHHHHHH
Q 003795 566 PD-----ILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPM--ADDVD---YLAVASM--TDGMV-GAELANIVE 632 (795)
Q Consensus 566 ~d-----~LdpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~~~--~~d~d---l~~LA~~--t~G~s-gadL~~lv~ 632 (795)
.. .++|+|.+ ||+..|.|++|+.+++..|+..++.+... .++.. ...+.+. .+.+. ++++.+++.
T Consensus 171 ~~~~~~~~~np~L~s--R~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~ve 248 (287)
T CHL00181 171 DRMDKFYESNPGLSS--RIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKRMEQPLFANARSVRNALD 248 (287)
T ss_pred HHHHHHHhcCHHHHH--hCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCccHHHHHHHHH
Confidence 32 34699998 99999999999999999999999876542 22211 1122222 23444 899999998
Q ss_pred HHHHHHHHc----CCCccCHHHHH
Q 003795 633 VAAINMMRD----GRTEITTDDLL 652 (795)
Q Consensus 633 ~A~~~A~~~----~~~~It~edl~ 652 (795)
.|...-..+ +...++.+|+.
T Consensus 249 ~~~~~~~~r~~~~~~~~~~~~~l~ 272 (287)
T CHL00181 249 RARMRQANRIFESGGRVLTKADLV 272 (287)
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHh
Confidence 876543322 33345555543
No 54
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=1.2e-17 Score=175.87 Aligned_cols=201 Identities=24% Similarity=0.308 Sum_probs=156.2
Q ss_pred CceEEECCCCCchhHHHHHhhhhcc---------ccEEEeeccceehhhhccchhhHHhHHHHHHhc---CCc--eeEhH
Q 003795 452 GGILLCGPPGVGKTLLAKAVAGEAG---------VNFFSISASQFVEIYVGVGASRVRSLYQEAKDN---APS--VVFID 517 (795)
Q Consensus 452 ~giLL~GPpGtGKTtLakaLA~el~---------~~~~~is~se~~~~~~g~~~~~l~~lf~~ar~~---~p~--Il~ID 517 (795)
+-+||+||||||||+|+|+||..+. ..++++++..+.++|+++..+.+..+|++.... ..+ .++||
T Consensus 178 RliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLID 257 (423)
T KOG0744|consen 178 RLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLID 257 (423)
T ss_pred eEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeH
Confidence 3399999999999999999999762 357889999999999999999999999887642 222 37899
Q ss_pred HHHHHhhhccC-CCCCCcchHHHHHHHHHHhhhcccCCCcEEEEeccCCCCCCCccccCCCcccceecCCCCCHHHHHHH
Q 003795 518 ELDAVGRERGL-IKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEI 596 (795)
Q Consensus 518 EID~l~~~r~~-~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVIatTN~~d~LdpaLlrpgRFd~~I~~~~Pd~~eR~~I 596 (795)
|+++++..|.. .+++.....-.++|.+|.+||.+....||++++|+|..+.||.||.. |-|.+.++++|+...+.+|
T Consensus 258 EVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~NvliL~TSNl~~siD~AfVD--RADi~~yVG~Pt~~ai~~I 335 (423)
T KOG0744|consen 258 EVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLILATSNLTDSIDVAFVD--RADIVFYVGPPTAEAIYEI 335 (423)
T ss_pred HHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEeccchHHHHHHHhhh--HhhheeecCCccHHHHHHH
Confidence 99999877632 23333444556899999999999999999999999999999999999 9999999999999999999
Q ss_pred HHHHHccCCC---------C----C-----hhhHHHHHhh-CCCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Q 003795 597 LKVHARKKPM---------A----D-----DVDYLAVASM-TDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQ 656 (795)
Q Consensus 597 l~~~l~~~~~---------~----~-----d~dl~~LA~~-t~G~sgadL~~lv~~A~~~A~~~~~~~It~edl~~Al~ 656 (795)
++..+.+... . . +.....++.. +.|.||+.|+.+=-.|.. ..-....|+.+++..|+-
T Consensus 336 lkscieEL~~~gIi~~~~~s~~~~~~i~~~~~~~~~~~~~~~~gLSGRtlrkLP~Laha--~y~~~~~v~~~~fl~al~ 412 (423)
T KOG0744|consen 336 LKSCIEELISSGIILFHQRSTGVKEFIKYQKALRNILIELSTVGLSGRTLRKLPLLAHA--EYFRTFTVDLSNFLLALL 412 (423)
T ss_pred HHHHHHHHHhcCeeeeeccchhhhHHhHhhHhHHHHHHHHhhcCCccchHhhhhHHHHH--hccCCCccChHHHHHHHH
Confidence 9987754310 0 0 1112223333 589999999988665543 223345799999988865
No 55
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.72 E-value=7.2e-17 Score=173.98 Aligned_cols=209 Identities=19% Similarity=0.295 Sum_probs=155.9
Q ss_pred CccCchHHHHHHHHHHHhccccccccccCccc--CC-ceEEECCCCCchhHHHHHhhhhcc-------ccEEEeecccee
Q 003795 419 DVAGLGKIRLELEEIVKFFTHGEMYRRRGVRI--PG-GILLCGPPGVGKTLLAKAVAGEAG-------VNFFSISASQFV 488 (795)
Q Consensus 419 ~~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i--~~-giLL~GPpGtGKTtLakaLA~el~-------~~~~~is~se~~ 488 (795)
...|+++++..+.+++........+...|+.. |+ +++|+||||||||++|+++|..+. .+++.++++++.
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~ 102 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLV 102 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHHh
Confidence 57899999999999988876666777778765 32 599999999999999999988652 368899988888
Q ss_pred hhhhccchhhHHhHHHHHHhcCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcccCCCcEEEEeccCCC--
Q 003795 489 EIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRP-- 566 (795)
Q Consensus 489 ~~~~g~~~~~l~~lf~~ar~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVIatTN~~-- 566 (795)
..|+|.....+..+|+.+. ++++||||++.+.+.+ .........++.|+..|+. ...+++||++++..
T Consensus 103 ~~~~g~~~~~~~~~~~~a~---~gvL~iDEi~~L~~~~-----~~~~~~~~~~~~Ll~~le~--~~~~~~vI~a~~~~~~ 172 (284)
T TIGR02880 103 GQYIGHTAPKTKEILKRAM---GGVLFIDEAYYLYRPD-----NERDYGQEAIEILLQVMEN--QRDDLVVILAGYKDRM 172 (284)
T ss_pred HhhcccchHHHHHHHHHcc---CcEEEEechhhhccCC-----CccchHHHHHHHHHHHHhc--CCCCEEEEEeCCcHHH
Confidence 8888888777777777663 4799999999885321 1122344577888888883 44678888877643
Q ss_pred C---CCCccccCCCcccceecCCCCCHHHHHHHHHHHHccCCCC-ChhhHHHHHhh-------CCCCcHHHHHHHHHHHH
Q 003795 567 D---ILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASM-------TDGMVGAELANIVEVAA 635 (795)
Q Consensus 567 d---~LdpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~~~~-~d~dl~~LA~~-------t~G~sgadL~~lv~~A~ 635 (795)
+ .++|+|.+ ||+..|.||+++.+++..|+..++.+.... +......+..+ ..--+++++.+++..+.
T Consensus 173 ~~~~~~np~L~s--R~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~~~ 250 (284)
T TIGR02880 173 DSFFESNPGFSS--RVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANARSIRNAIDRAR 250 (284)
T ss_pred HHHHhhCHHHHh--hCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHH
Confidence 3 25899999 999999999999999999999999875432 22223333332 22235899999999887
Q ss_pred HHHH
Q 003795 636 INMM 639 (795)
Q Consensus 636 ~~A~ 639 (795)
..-.
T Consensus 251 ~~~~ 254 (284)
T TIGR02880 251 LRQA 254 (284)
T ss_pred HHHH
Confidence 5543
No 56
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.71 E-value=7.6e-18 Score=201.62 Aligned_cols=188 Identities=23% Similarity=0.331 Sum_probs=134.5
Q ss_pred hhhhHHHHHHHhcCCCCcccccCccccccC-------ccCchHHHHHHHHHHHhccccccccccCccc---C-CceEEEC
Q 003795 390 FMKSGARVRRAYGKGLPQYLERGVDVKFSD-------VAGLGKIRLELEEIVKFFTHGEMYRRRGVRI---P-GGILLCG 458 (795)
Q Consensus 390 ~~~~~~~vsr~tgipv~~~~~~~~~~~f~~-------~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i---~-~giLL~G 458 (795)
..++.+++++|+|+|+..+...+....... +.|.+..+..+.+.+.. ...|+.. | +.++|+|
T Consensus 423 ~~~i~~v~~~~tgip~~~~~~~~~~~l~~l~~~L~~~ViGQ~~ai~~l~~~i~~-------~~~gl~~~~kp~~~~Lf~G 495 (758)
T PRK11034 423 VADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKM-------SRAGLGHEHKPVGSFLFAG 495 (758)
T ss_pred hhhHHHHHHHHhCCChhhhhhhHHHHHHHHHHHhcceEeCcHHHHHHHHHHHHH-------HhccccCCCCCcceEEEEC
Confidence 345677888899998887766544332222 34555555544444432 2334322 3 3499999
Q ss_pred CCCCchhHHHHHhhhhccccEEEeeccceehh------------hhccchhhHHhHHHHHHhcCCceeEhHHHHHHhhhc
Q 003795 459 PPGVGKTLLAKAVAGEAGVNFFSISASQFVEI------------YVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRER 526 (795)
Q Consensus 459 PpGtGKTtLakaLA~el~~~~~~is~se~~~~------------~~g~~~~~l~~lf~~ar~~~p~Il~IDEID~l~~~r 526 (795)
|||||||++|++||..++.+++.++++++.+. |+|.... ..+.+.++..+++|++|||||++.+.
T Consensus 496 P~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG~~~gyvg~~~~--g~L~~~v~~~p~sVlllDEieka~~~- 572 (758)
T PRK11034 496 PTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQG--GLLTDAVIKHPHAVLLLDEIEKAHPD- 572 (758)
T ss_pred CCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHcCCCCCccccccc--chHHHHHHhCCCcEEEeccHhhhhHH-
Confidence 99999999999999999999999999987542 2332222 23556667777899999999999765
Q ss_pred cCCCCCCcchHHHHHHHHHHhhhcc---------cCCCcEEEEeccCCC-------------------------CCCCcc
Q 003795 527 GLIKGSGGQERDATLNQLLVCLDGF---------EGRGNVITIASTNRP-------------------------DILDPA 572 (795)
Q Consensus 527 ~~~~~Sgge~~r~~l~~LL~~ld~~---------~~~~~VlVIatTN~~-------------------------d~Ldpa 572 (795)
+++.|++.|+.- .+..+++||+|||.. ..+.|+
T Consensus 573 -------------v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pe 639 (758)
T PRK11034 573 -------------VFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPE 639 (758)
T ss_pred -------------HHHHHHHHHhcCeeecCCCceecCCCcEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHH
Confidence 788888888742 123588999999932 135688
Q ss_pred ccCCCcccceecCCCCCHHHHHHHHHHHHc
Q 003795 573 LVRPGRFDRKIFIPKPGLIGRMEILKVHAR 602 (795)
Q Consensus 573 LlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~ 602 (795)
|++ |+|.+|.|++.+.++...|+...+.
T Consensus 640 fl~--Rid~ii~f~~L~~~~l~~I~~~~l~ 667 (758)
T PRK11034 640 FRN--RLDNIIWFDHLSTDVIHQVVDKFIV 667 (758)
T ss_pred HHc--cCCEEEEcCCCCHHHHHHHHHHHHH
Confidence 887 9999999999999999999887664
No 57
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.71 E-value=2e-17 Score=199.69 Aligned_cols=230 Identities=20% Similarity=0.229 Sum_probs=151.1
Q ss_pred chhhhHHHHHHHhcCCCCcccccCccccccCccCchHHHHHHHHHHHhccccccccccCccc---CC-ceEEECCCCCch
Q 003795 389 QFMKSGARVRRAYGKGLPQYLERGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRI---PG-GILLCGPPGVGK 464 (795)
Q Consensus 389 ~~~~~~~~vsr~tgipv~~~~~~~~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i---~~-giLL~GPpGtGK 464 (795)
+..++..++++|+|+|+......+..........+.+.+.++++++..+.......+.|+.. |. .++|+||+||||
T Consensus 418 ~~~~i~~~i~~~tgiP~~~~~~~~~~~l~~l~~~l~~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGK 497 (731)
T TIGR02639 418 SVKDIENVVAKMAHIPVKTVSVDDREKLKNLEKNLKAKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGK 497 (731)
T ss_pred CHHHHHHHHHHHhCCChhhhhhHHHHHHHHHHHHHhcceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccH
Confidence 34455667777777777655443333222222223333333334433333333333455543 33 389999999999
Q ss_pred hHHHHHhhhhccccEEEeeccceehh------------hhccchhhHHhHHHHHHhcCCceeEhHHHHHHhhhccCCCCC
Q 003795 465 TLLAKAVAGEAGVNFFSISASQFVEI------------YVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGS 532 (795)
Q Consensus 465 TtLakaLA~el~~~~~~is~se~~~~------------~~g~~~~~l~~lf~~ar~~~p~Il~IDEID~l~~~r~~~~~S 532 (795)
|+||++||..++.++++++++++.+. |+|.... ..+.+.++..+++|++|||+|.+++.
T Consensus 498 T~lA~~la~~l~~~~~~~d~se~~~~~~~~~lig~~~gyvg~~~~--~~l~~~~~~~p~~VvllDEieka~~~------- 568 (731)
T TIGR02639 498 TELAKQLAEALGVHLERFDMSEYMEKHTVSRLIGAPPGYVGFEQG--GLLTEAVRKHPHCVLLLDEIEKAHPD------- 568 (731)
T ss_pred HHHHHHHHHHhcCCeEEEeCchhhhcccHHHHhcCCCCCcccchh--hHHHHHHHhCCCeEEEEechhhcCHH-------
Confidence 99999999999999999999987653 3333322 34667777788899999999998765
Q ss_pred CcchHHHHHHHHHHhhhcc---------cCCCcEEEEeccCCCC-------------------------CCCccccCCCc
Q 003795 533 GGQERDATLNQLLVCLDGF---------EGRGNVITIASTNRPD-------------------------ILDPALVRPGR 578 (795)
Q Consensus 533 gge~~r~~l~~LL~~ld~~---------~~~~~VlVIatTN~~d-------------------------~LdpaLlrpgR 578 (795)
+++.|++.++.. .+..+++||+|||... .+.|+|+. |
T Consensus 569 -------~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~--R 639 (731)
T TIGR02639 569 -------IYNILLQVMDYATLTDNNGRKADFRNVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRN--R 639 (731)
T ss_pred -------HHHHHHHhhccCeeecCCCcccCCCCCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHh--c
Confidence 788888888752 1245789999998742 25778877 9
Q ss_pred ccceecCCCCCHHHHHHHHHHHHccC-------CCC---ChhhHHHHHhh--CCCCcHHHHHHHHHHHHH
Q 003795 579 FDRKIFIPKPGLIGRMEILKVHARKK-------PMA---DDVDYLAVASM--TDGMVGAELANIVEVAAI 636 (795)
Q Consensus 579 Fd~~I~~~~Pd~~eR~~Il~~~l~~~-------~~~---~d~dl~~LA~~--t~G~sgadL~~lv~~A~~ 636 (795)
||.+|.|.+.+.++...|++..+.+. .+. ++.....|+.. ...+..+.|..+++.-..
T Consensus 640 id~Vi~F~pLs~e~l~~Iv~~~L~~l~~~l~~~~~~l~i~~~a~~~La~~~~~~~~GaR~l~r~i~~~~~ 709 (731)
T TIGR02639 640 LDAIIHFNPLSEEVLEKIVQKFVDELSKQLNEKNIKLELTDDAKKYLAEKGYDEEFGARPLARVIQEEIK 709 (731)
T ss_pred CCeEEEcCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEeCHHHHHHHHHhCCCcccCchHHHHHHHHHhH
Confidence 99999999999999999999877532 111 22224445543 344556667666665443
No 58
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.68 E-value=2.4e-16 Score=181.91 Aligned_cols=240 Identities=24% Similarity=0.273 Sum_probs=169.0
Q ss_pred hhhhhhhccccceeeeechhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchhhhhhhhhcCchHHHh
Q 003795 308 KDSTVATGLGIVFFVIFYRTVVLNYRRQKKDYEDRLKIEKAEREERKKLRQLERELEGLEGADDEIEQGEAEQNPHLKMA 387 (795)
Q Consensus 308 ~~~~~i~~l~~~~~l~~Ykgny~~y~~~~e~~e~~~~~ek~~e~~~~ei~~Lekele~~~~~~~~~~~~~~~~~~~~k~~ 387 (795)
.-+++|.++ +++++..|.|||+.|.++++ ++.....+.++.+++++++++..+.+....... .+++
T Consensus 215 ~V~t~I~~l-d~g~l~~y~Gny~~~~~~r~--~~~~~~~~~~~~~~~~~~~~~~~i~r~~~~~~~-----------~k~a 280 (530)
T COG0488 215 NVATHILEL-DRGKLTPYKGNYSSYLEQKA--ERLRQEAAAYEKQQKELAKEQEWIRRGKAAASK-----------AKKA 280 (530)
T ss_pred HHhhheEEe-cCCceeEecCCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch-----------HHHH
Confidence 346788889 89999999999999999999 444555555555677777777777654422111 1122
Q ss_pred hchhhhHHHHHHHhcCCCCcccccCccccccCcc-CchHHHHHHHHHHHhccc-cccccccCcccCCc--eEEECCCCCc
Q 003795 388 MQFMKSGARVRRAYGKGLPQYLERGVDVKFSDVA-GLGKIRLELEEIVKFFTH-GEMYRRRGVRIPGG--ILLCGPPGVG 463 (795)
Q Consensus 388 v~~~~~~~~vsr~tgipv~~~~~~~~~~~f~~~~-gl~~~~~~l~~lv~~~~~-~~~~~~~gl~i~~g--iLL~GPpGtG 463 (795)
....+..+.+........+........+.|.... ..++.+..++++...|.. ..++.++++.+.+| |.|+||||+|
T Consensus 281 ~sr~k~l~k~~~~~~~~~~~~~~~~~~~~f~~~~~~~g~~vl~~~~~~~~y~~~~~l~~~~s~~i~~g~riaiiG~NG~G 360 (530)
T COG0488 281 KSRIKRLEKLEARLAEERPVEEGKPLAFRFPPPGKRLGKLVLEFENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAG 360 (530)
T ss_pred HHHHHHHHHHHhhhhhcccccccccceeeccCCcccCCCeeEEEeccccccCCCceeecCceEEecCCCEEEEECCCCCC
Confidence 2222222332211000011111122334666655 478899999999999965 57889999999888 9999999999
Q ss_pred hhHHHHHhhhhccccEEEeeccceehh-hhccchhhH---HhHHHHHHhcCCceeEhHHHHHHhhhccCCCC--------
Q 003795 464 KTLLAKAVAGEAGVNFFSISASQFVEI-YVGVGASRV---RSLYQEAKDNAPSVVFIDELDAVGRERGLIKG-------- 531 (795)
Q Consensus 464 KTtLakaLA~el~~~~~~is~se~~~~-~~g~~~~~l---~~lf~~ar~~~p~Il~IDEID~l~~~r~~~~~-------- 531 (795)
||||+|.|++.+++..+.+.++..+.. |+.+....+ ..+++.++...|... --++..+++.+++.+.
T Consensus 361 KSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~-e~~~r~~L~~f~F~~~~~~~~v~~ 439 (530)
T COG0488 361 KSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGD-EQEVRAYLGRFGFTGEDQEKPVGV 439 (530)
T ss_pred HHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCcccc-HHHHHHHHHHcCCChHHHhCchhh
Confidence 999999999999888888887664433 666655433 267888888777543 5677788777666544
Q ss_pred -CCcchHHHHHHHHHHhhhcccCCCcEEEE-eccCCCCC
Q 003795 532 -SGGQERDATLNQLLVCLDGFEGRGNVITI-ASTNRPDI 568 (795)
Q Consensus 532 -Sgge~~r~~l~~LL~~ld~~~~~~~VlVI-atTN~~d~ 568 (795)
|||++.|..+..++ ..++|++|+ .+|||+|.
T Consensus 440 LSGGEk~Rl~La~ll------~~~pNvLiLDEPTNhLDi 472 (530)
T COG0488 440 LSGGEKARLLLAKLL------LQPPNLLLLDEPTNHLDI 472 (530)
T ss_pred cCHhHHHHHHHHHHh------ccCCCEEEEcCCCccCCH
Confidence 99999999999999 778999999 99999873
No 59
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=1.1e-15 Score=173.97 Aligned_cols=235 Identities=24% Similarity=0.256 Sum_probs=170.6
Q ss_pred CceEEECCCCCchhHHHHHhhhhcc----ccEEEeeccceehhhhccchhhHHhHHHHHHhcCCceeEhHHHHHHhhhcc
Q 003795 452 GGILLCGPPGVGKTLLAKAVAGEAG----VNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERG 527 (795)
Q Consensus 452 ~giLL~GPpGtGKTtLakaLA~el~----~~~~~is~se~~~~~~g~~~~~l~~lf~~ar~~~p~Il~IDEID~l~~~r~ 527 (795)
++|+|.||+|+|||.|+++|+.+.. ..+..++|+.+....+....+.+..+|..+.+++|+|+++|++|.+.+...
T Consensus 432 ~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~~~~~PSiIvLDdld~l~~~s~ 511 (952)
T KOG0735|consen 432 GNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLEKIQKFLNNVFSEALWYAPSIIVLDDLDCLASASS 511 (952)
T ss_pred ccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHHHHHHHHHHHHHHHHhhCCcEEEEcchhhhhccCc
Confidence 4599999999999999999999764 456678888876665655666778899999999999999999999976221
Q ss_pred CCCCCCcchHHHHHHHHH-Hhhhcc-cCCCcEEEEeccCCCCCCCccccCCCcccceecCCCCCHHHHHHHHHHHHccCC
Q 003795 528 LIKGSGGQERDATLNQLL-VCLDGF-EGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKP 605 (795)
Q Consensus 528 ~~~~Sgge~~r~~l~~LL-~~ld~~-~~~~~VlVIatTN~~d~LdpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~~ 605 (795)
. .++........++.++ +.+..+ ..+..+.||++.+....|+|-|.+|++|+.++.++.|+..+|.+||+..+.+..
T Consensus 512 ~-e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~ 590 (952)
T KOG0735|consen 512 N-ENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAPAVTRRKEILTTIFSKNL 590 (952)
T ss_pred c-cCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCCcchhHHHHHHHHHHHhhh
Confidence 1 1122222223344444 333333 334557889999999999999999999999999999999999999999888765
Q ss_pred CC-ChhhHHHHHhhCCCCcHHHHHHHHHHHHHHHHH--c--CCCccCHHHHHHHHHH----HHhcccccccccchhh--h
Q 003795 606 MA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMR--D--GRTEITTDDLLQAAQI----EERGMLDRKERSSETW--R 674 (795)
Q Consensus 606 ~~-~d~dl~~LA~~t~G~sgadL~~lv~~A~~~A~~--~--~~~~It~edl~~Al~~----~~~~~~~~~~~~~~~~--~ 674 (795)
.. ..-|++.++..|+||...|+.-++.+|...|.. . +...+|.++|.+++.. ..+++..... ...+ .
T Consensus 591 ~~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~leris~~~klltke~f~ksL~~F~P~aLR~ik~~k~--tgi~w~d 668 (952)
T KOG0735|consen 591 SDITMDDLDFLSVKTEGYLATDLVIFVERAIHEAFLERISNGPKLLTKELFEKSLKDFVPLALRGIKLVKS--TGIRWED 668 (952)
T ss_pred hhhhhHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHhcChHHhhhcccccc--CCCCcee
Confidence 22 122455599999999999999999999988773 2 3337999999999882 2222221111 1111 2
Q ss_pred HHHHHHHHHHHHHHh
Q 003795 675 QVAINEAAMAVVAVN 689 (795)
Q Consensus 675 ~va~hEaGhalva~~ 689 (795)
+-..+|+-.++-..+
T Consensus 669 igg~~~~k~~l~~~i 683 (952)
T KOG0735|consen 669 IGGLFEAKKVLEEVI 683 (952)
T ss_pred cccHHHHHHHHHHHH
Confidence 335777777766543
No 60
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=1.2e-15 Score=175.13 Aligned_cols=219 Identities=24% Similarity=0.395 Sum_probs=174.7
Q ss_pred HHHHhccccccccccCcccCCceEEECCCCCchhHHHHHhhhhccccEEEeeccceehhhhccchhhHHhHHHHHHhcCC
Q 003795 432 EIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAP 511 (795)
Q Consensus 432 ~lv~~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~se~~~~~~g~~~~~l~~lf~~ar~~~p 511 (795)
.++..+.-+..-...+.+....+||+|+||||||+++++.|.+++.+++.++|.++.....+..+..+...|..++...|
T Consensus 412 ~l~~vl~p~~~~s~~~~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~p 491 (953)
T KOG0736|consen 412 ELVAVLSPQKQPSGALLTLNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRARRCSP 491 (953)
T ss_pred HHHHHhCcccCcchhccccceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHHhhcCc
Confidence 44444543333344455566669999999999999999999999999999999999988888888888999999999999
Q ss_pred ceeEhHHHHHHhhhccCCCCCCcchH--HHHHHHHHHhhhccc-CCCcEEEEeccCCCCCCCccccCCCcccceecCCCC
Q 003795 512 SVVFIDELDAVGRERGLIKGSGGQER--DATLNQLLVCLDGFE-GRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKP 588 (795)
Q Consensus 512 ~Il~IDEID~l~~~r~~~~~Sgge~~--r~~l~~LL~~ld~~~-~~~~VlVIatTN~~d~LdpaLlrpgRFd~~I~~~~P 588 (795)
+|+|+-++|.++.+.. |++.. ...+..++. ++.+. ....++||++|+..+.+++.+++ -|-..|.++.|
T Consensus 492 avifl~~~dvl~id~d-----gged~rl~~~i~~~ls-~e~~~~~~~~~ivv~t~~s~~~lp~~i~~--~f~~ei~~~~l 563 (953)
T KOG0736|consen 492 AVLFLRNLDVLGIDQD-----GGEDARLLKVIRHLLS-NEDFKFSCPPVIVVATTSSIEDLPADIQS--LFLHEIEVPAL 563 (953)
T ss_pred eEEEEeccceeeecCC-----CchhHHHHHHHHHHHh-cccccCCCCceEEEEeccccccCCHHHHH--hhhhhccCCCC
Confidence 9999999999875432 22222 233444443 33333 56789999999999999999988 78889999999
Q ss_pred CHHHHHHHHHHHHccCCCCChhhHHHHHhhCCCCcHHHHHHHHHHHHHHHH---HcC-----------------CCccCH
Q 003795 589 GLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMM---RDG-----------------RTEITT 648 (795)
Q Consensus 589 d~~eR~~Il~~~l~~~~~~~d~dl~~LA~~t~G~sgadL~~lv~~A~~~A~---~~~-----------------~~~It~ 648 (795)
+.++|.+||+.++....+..++....++.+|.||+.++++.++..+-..+. ... ...+++
T Consensus 564 se~qRl~iLq~y~~~~~~n~~v~~k~~a~~t~gfs~~~L~~l~~~~s~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~l~~ 643 (953)
T KOG0736|consen 564 SEEQRLEILQWYLNHLPLNQDVNLKQLARKTSGFSFGDLEALVAHSSLAAKTRIKNKGLAGGLQEEDEGELCAAGFLLTE 643 (953)
T ss_pred CHHHHHHHHHHHHhccccchHHHHHHHHHhcCCCCHHHHHHHhcCchHHHHHHHHhhcccccchhccccccccccceecH
Confidence 999999999999999999999999999999999999999999876622221 111 145899
Q ss_pred HHHHHHHHHH
Q 003795 649 DDLLQAAQIE 658 (795)
Q Consensus 649 edl~~Al~~~ 658 (795)
+||..|+...
T Consensus 644 edf~kals~~ 653 (953)
T KOG0736|consen 644 EDFDKALSRL 653 (953)
T ss_pred HHHHHHHHHH
Confidence 9999998843
No 61
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.59 E-value=4.4e-14 Score=153.52 Aligned_cols=210 Identities=21% Similarity=0.276 Sum_probs=146.3
Q ss_pred cccCccCchHHHHHHHHHHHhccccccccccCcccCCceEEECCCCCchhHHHHHhhhhccccEEEeeccceehhhhccc
Q 003795 416 KFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVG 495 (795)
Q Consensus 416 ~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~se~~~~~~g~~ 495 (795)
.|.+..|.++.+..+..++...... -..+.+++|+||||||||+|++++|.+++..+..+..+....
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~-------~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~------ 68 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMR-------QEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK------ 68 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhc-------CCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC------
Confidence 4677888888887777766533211 123456899999999999999999999987766554432111
Q ss_pred hhhHHhHHHHHHhcCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhccc----------------CCCcEEE
Q 003795 496 ASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE----------------GRGNVIT 559 (795)
Q Consensus 496 ~~~l~~lf~~ar~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~----------------~~~~VlV 559 (795)
...+...+... ..+.++||||++.+... ....|+..++... ....+++
T Consensus 69 ~~~l~~~l~~~--~~~~vl~iDEi~~l~~~--------------~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l 132 (305)
T TIGR00635 69 PGDLAAILTNL--EEGDVLFIDEIHRLSPA--------------VEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTL 132 (305)
T ss_pred chhHHHHHHhc--ccCCEEEEehHhhhCHH--------------HHHHhhHHHhhhheeeeeccCccccceeecCCCeEE
Confidence 11222233222 34679999999988543 2222333332211 1134788
Q ss_pred EeccCCCCCCCccccCCCcccceecCCCCCHHHHHHHHHHHHccCCCC-ChhhHHHHHhhCCCCcHHHHHHHHHHHHHHH
Q 003795 560 IASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINM 638 (795)
Q Consensus 560 IatTN~~d~LdpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~~~~-~d~dl~~LA~~t~G~sgadL~~lv~~A~~~A 638 (795)
|++||.+..+++++++ ||...+.+++|+.+++.++++..+...... ++..+..++..+.|.. +.+.++++.+...|
T Consensus 133 i~~t~~~~~l~~~l~s--R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~p-R~~~~ll~~~~~~a 209 (305)
T TIGR00635 133 VGATTRAGMLTSPLRD--RFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTP-RIANRLLRRVRDFA 209 (305)
T ss_pred EEecCCccccCHHHHh--hcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCc-chHHHHHHHHHHHH
Confidence 8999999999999988 998889999999999999999887654333 3344677888888755 66678888877666
Q ss_pred HHcCCCccCHHHHHHHHHH
Q 003795 639 MRDGRTEITTDDLLQAAQI 657 (795)
Q Consensus 639 ~~~~~~~It~edl~~Al~~ 657 (795)
...+...|+.+++..++..
T Consensus 210 ~~~~~~~it~~~v~~~l~~ 228 (305)
T TIGR00635 210 QVRGQKIINRDIALKALEM 228 (305)
T ss_pred HHcCCCCcCHHHHHHHHHH
Confidence 6666677999999998875
No 62
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.59 E-value=2.9e-14 Score=155.11 Aligned_cols=212 Identities=24% Similarity=0.351 Sum_probs=142.1
Q ss_pred CceEEECCCCCchhHHHHHhhhhccccEEEeeccceehhhhccchhhHHhHHHHHHhcC----CceeEhHHHHHHhhhcc
Q 003795 452 GGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNA----PSVVFIDELDAVGRERG 527 (795)
Q Consensus 452 ~giLL~GPpGtGKTtLakaLA~el~~~~~~is~se~~~~~~g~~~~~l~~lf~~ar~~~----p~Il~IDEID~l~~~r~ 527 (795)
.+++|||||||||||||++||+..+..|..++... .+.+.++.+++.++... -.|+|+|||+.+...
T Consensus 49 ~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~-------~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~-- 119 (436)
T COG2256 49 HSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT-------SGVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKA-- 119 (436)
T ss_pred ceeEEECCCCCCHHHHHHHHHHhhCCceEEecccc-------ccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChh--
Confidence 34899999999999999999999999999988743 34466788999886543 369999999998654
Q ss_pred CCCCCCcchHHHHHHHHHHhhhcccCCCcEEEEecc--CCCCCCCccccCCCcccceecCCCCCHHHHHHHHHHHHcc--
Q 003795 528 LIKGSGGQERDATLNQLLVCLDGFEGRGNVITIAST--NRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARK-- 603 (795)
Q Consensus 528 ~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVIatT--N~~d~LdpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~-- 603 (795)
....||-.++ ++.+++|++| |+.-.+.++|++++| ++.+.+.+.++...++...+..
T Consensus 120 ------------QQD~lLp~vE----~G~iilIGATTENPsF~ln~ALlSR~~---vf~lk~L~~~di~~~l~ra~~~~~ 180 (436)
T COG2256 120 ------------QQDALLPHVE----NGTIILIGATTENPSFELNPALLSRAR---VFELKPLSSEDIKKLLKRALLDEE 180 (436)
T ss_pred ------------hhhhhhhhhc----CCeEEEEeccCCCCCeeecHHHhhhhh---eeeeecCCHHHHHHHHHHHHhhhh
Confidence 5566776665 5678888665 666789999999444 7889999999999999873322
Q ss_pred CCCC------ChhhHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHHhcccccccccchhhhHHH
Q 003795 604 KPMA------DDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEERGMLDRKERSSETWRQVA 677 (795)
Q Consensus 604 ~~~~------~d~dl~~LA~~t~G~sgadL~~lv~~A~~~A~~~~~~~It~edl~~Al~~~~~~~~~~~~~~~~~~~~va 677 (795)
..+. ++.-...++..+.|-..+-| +++..+...+ +.+. .++.+++.+.++...... + .....-.--+.|
T Consensus 181 rgl~~~~~~i~~~a~~~l~~~s~GD~R~aL-N~LE~~~~~~-~~~~-~~~~~~l~~~l~~~~~~~-D-k~gD~hYdliSA 255 (436)
T COG2256 181 RGLGGQIIVLDEEALDYLVRLSNGDARRAL-NLLELAALSA-EPDE-VLILELLEEILQRRSARF-D-KDGDAHYDLISA 255 (436)
T ss_pred cCCCcccccCCHHHHHHHHHhcCchHHHHH-HHHHHHHHhc-CCCc-ccCHHHHHHHHhhhhhcc-C-CCcchHHHHHHH
Confidence 2222 33446778888887665555 5555444332 2333 455888888776432211 1 111111222345
Q ss_pred HHH---------HHHHHHHHhcCCCCcc
Q 003795 678 INE---------AAMAVVAVNFPDLKNI 696 (795)
Q Consensus 678 ~hE---------aGhalva~~l~~~~~i 696 (795)
+|. |-|.++..+-.+.+|.
T Consensus 256 ~hKSvRGSD~dAALyylARmi~~GeDp~ 283 (436)
T COG2256 256 LHKSVRGSDPDAALYYLARMIEAGEDPL 283 (436)
T ss_pred HHHhhccCCcCHHHHHHHHHHhcCCCHH
Confidence 554 5677777666555453
No 63
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=4.3e-14 Score=163.88 Aligned_cols=215 Identities=42% Similarity=0.690 Sum_probs=189.9
Q ss_pred ccccccccCcccCCceEEECCCCCchhHHHHHhhhhccccEEEeeccceehhhhccchhhHHhHHHHHHhcCCceeEhHH
Q 003795 439 HGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDE 518 (795)
Q Consensus 439 ~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~se~~~~~~g~~~~~l~~lf~~ar~~~p~Il~IDE 518 (795)
.+..+..++...+.+++++||||+|||+++++++.. +..+..++..+....++|......+.+|+.+....|+++++|+
T Consensus 6 ~~~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii~~d~ 84 (494)
T COG0464 6 EPELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSIIFIDE 84 (494)
T ss_pred CHHHHHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeEeech
Confidence 345667788999999999999999999999999999 6655778888888899999999999999999999999999999
Q ss_pred HHHHhhhccCCCCCCcchHHHHHHHHHHhhhcccCCCcEEEEeccCCCCCCCccccCCCcccceecCCCCCHHHHHHHHH
Q 003795 519 LDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILK 598 (795)
Q Consensus 519 ID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVIatTN~~d~LdpaLlrpgRFd~~I~~~~Pd~~eR~~Il~ 598 (795)
++.+.+.+.. ..+...+.+...++..++++. ...+++++.||.++.+++++++||||+..+.+..|+...+.+|+.
T Consensus 85 ~~~~~~~~~~---~~~~~~~~v~~~l~~~~d~~~-~~~v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ei~~ 160 (494)
T COG0464 85 IDALAPKRSS---DQGEVERRVVAQLLALMDGLK-RGQVIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAGRLEILQ 160 (494)
T ss_pred hhhcccCccc---cccchhhHHHHHHHHhccccc-CCceEEEeecCCccccChhHhCccccceeeecCCCCHHHHHHHHH
Confidence 9999887654 455666778999999999888 444888899999999999999999999999999999999999999
Q ss_pred HHHccCCCCChhhHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcC------CCccCHHHHHHHHHHH
Q 003795 599 VHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDG------RTEITTDDLLQAAQIE 658 (795)
Q Consensus 599 ~~l~~~~~~~d~dl~~LA~~t~G~sgadL~~lv~~A~~~A~~~~------~~~It~edl~~Al~~~ 658 (795)
.+........+.+...++..+.|++++++..++..+...+.++. ...++.+++.+++...
T Consensus 161 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~l~~~ 226 (494)
T COG0464 161 IHTRLMFLGPPGTGKTLAARTVGKSGADLGALAKEAALRELRRAIDLVGEYIGVTEDDFEEALKKV 226 (494)
T ss_pred HHHhcCCCcccccHHHHHHhcCCccHHHHHHHHHHHHHHHHHhhhccCcccccccHHHHHHHHHhc
Confidence 99988888878899999999999999999999999988887774 3458899999998854
No 64
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.58 E-value=4.8e-14 Score=155.21 Aligned_cols=213 Identities=22% Similarity=0.255 Sum_probs=152.1
Q ss_pred ccccccCccCchHHHHHHHHHHHhccccccccccCcccCCceEEECCCCCchhHHHHHhhhhccccEEEeeccceehhhh
Q 003795 413 VDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYV 492 (795)
Q Consensus 413 ~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~se~~~~~~ 492 (795)
.+..|.+..|.++.+..+..++...... -..+.+++|+||||+|||+||+++|++++..+..++...+.
T Consensus 20 rP~~~~~~vG~~~~~~~l~~~l~~~~~~-------~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~---- 88 (328)
T PRK00080 20 RPKSLDEFIGQEKVKENLKIFIEAAKKR-------GEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALE---- 88 (328)
T ss_pred CcCCHHHhcCcHHHHHHHHHHHHHHHhc-------CCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEeccccc----
Confidence 4567888999998888877766543211 12345699999999999999999999999887766554321
Q ss_pred ccchhhHHhHHHHHHhcCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhccc----------------CCCc
Q 003795 493 GVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE----------------GRGN 556 (795)
Q Consensus 493 g~~~~~l~~lf~~ar~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~----------------~~~~ 556 (795)
....+..++... ..++++|||||+.+... ....+...++... .-.+
T Consensus 89 --~~~~l~~~l~~l--~~~~vl~IDEi~~l~~~--------------~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~ 150 (328)
T PRK00080 89 --KPGDLAAILTNL--EEGDVLFIDEIHRLSPV--------------VEEILYPAMEDFRLDIMIGKGPAARSIRLDLPP 150 (328)
T ss_pred --ChHHHHHHHHhc--ccCCEEEEecHhhcchH--------------HHHHHHHHHHhcceeeeeccCccccceeecCCC
Confidence 112233344333 34679999999988532 1122223232210 1134
Q ss_pred EEEEeccCCCCCCCccccCCCcccceecCCCCCHHHHHHHHHHHHccCCCC-ChhhHHHHHhhCCCCcHHHHHHHHHHHH
Q 003795 557 VITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAELANIVEVAA 635 (795)
Q Consensus 557 VlVIatTN~~d~LdpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~~~~-~d~dl~~LA~~t~G~sgadL~~lv~~A~ 635 (795)
+.+|++||.+..++++|++ ||+..+.|++|+.+++.+|++..+...... ++..+..++..+.|. ++.+..+++.+.
T Consensus 151 ~~li~at~~~~~l~~~L~s--Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~-pR~a~~~l~~~~ 227 (328)
T PRK00080 151 FTLIGATTRAGLLTSPLRD--RFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGT-PRIANRLLRRVR 227 (328)
T ss_pred ceEEeecCCcccCCHHHHH--hcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCC-chHHHHHHHHHH
Confidence 7889999999999999988 999899999999999999999887765443 333467888888864 477778888877
Q ss_pred HHHHHcCCCccCHHHHHHHHHH
Q 003795 636 INMMRDGRTEITTDDLLQAAQI 657 (795)
Q Consensus 636 ~~A~~~~~~~It~edl~~Al~~ 657 (795)
..+...+...|+.+++..++..
T Consensus 228 ~~a~~~~~~~I~~~~v~~~l~~ 249 (328)
T PRK00080 228 DFAQVKGDGVITKEIADKALDM 249 (328)
T ss_pred HHHHHcCCCCCCHHHHHHHHHH
Confidence 7776666678999999999863
No 65
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.54 E-value=5.3e-14 Score=144.30 Aligned_cols=190 Identities=22% Similarity=0.302 Sum_probs=124.0
Q ss_pred ccccccCccCchHHHHHHHHHHHhccccccccccCcccCCceEEECCCCCchhHHHHHhhhhccccEEEeeccceehhhh
Q 003795 413 VDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYV 492 (795)
Q Consensus 413 ~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~se~~~~~~ 492 (795)
.+..|++..|.++.+..+.-++...... -....+++|+||||+||||||+.||++++.++..+++..+..
T Consensus 19 RP~~L~efiGQ~~l~~~l~i~i~aa~~r-------~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k--- 88 (233)
T PF05496_consen 19 RPKSLDEFIGQEHLKGNLKILIRAAKKR-------GEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEK--- 88 (233)
T ss_dssp S-SSCCCS-S-HHHHHHHHHHHHHHHCT-------TS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--S---
T ss_pred CCCCHHHccCcHHHHhhhHHHHHHHHhc-------CCCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhh---
Confidence 5678999999999887776655543211 112234899999999999999999999999998877653211
Q ss_pred ccchhhHHhHHHHHHhcCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhccc-----CC-----------Cc
Q 003795 493 GVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE-----GR-----------GN 556 (795)
Q Consensus 493 g~~~~~l~~lf~~ar~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~-----~~-----------~~ 556 (795)
...+..++.... ...|+|||||+.+... ....|+..|+++. +. .+
T Consensus 89 ---~~dl~~il~~l~--~~~ILFIDEIHRlnk~--------------~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~ 149 (233)
T PF05496_consen 89 ---AGDLAAILTNLK--EGDILFIDEIHRLNKA--------------QQEILLPAMEDGKIDIIIGKGPNARSIRINLPP 149 (233)
T ss_dssp ---CHHHHHHHHT----TT-EEEECTCCC--HH--------------HHHHHHHHHHCSEEEEEBSSSSS-BEEEEE---
T ss_pred ---HHHHHHHHHhcC--CCcEEEEechhhccHH--------------HHHHHHHHhccCeEEEEeccccccceeeccCCC
Confidence 223333444432 3569999999998654 6677777777532 11 35
Q ss_pred EEEEeccCCCCCCCccccCCCcccceecCCCCCHHHHHHHHHHHHccCCCCC-hhhHHHHHhhCCCCcHHHHHHHHHHH
Q 003795 557 VITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMAD-DVDYLAVASMTDGMVGAELANIVEVA 634 (795)
Q Consensus 557 VlVIatTN~~d~LdpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~~~~~-d~dl~~LA~~t~G~sgadL~~lv~~A 634 (795)
+.+|+||+....+.++|+. ||..+..+..++.++...|+........+.- +.....+|.++.| +++-..++++.+
T Consensus 150 FTligATTr~g~ls~pLrd--RFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrG-tPRiAnrll~rv 225 (233)
T PF05496_consen 150 FTLIGATTRAGLLSSPLRD--RFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRG-TPRIANRLLRRV 225 (233)
T ss_dssp -EEEEEESSGCCTSHCCCT--TSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTT-SHHHHHHHHHHH
T ss_pred ceEeeeeccccccchhHHh--hcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCC-ChHHHHHHHHHH
Confidence 8899999999999999998 9998889999999999999997776655442 2336678888886 555555666543
No 66
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.51 E-value=1.5e-13 Score=166.23 Aligned_cols=221 Identities=23% Similarity=0.325 Sum_probs=153.7
Q ss_pred cccccCccCchHHHHHHHHHHHhccccccccccCcccCCceEEECCCCCchhHHHHHhhhhc----------cccEEEee
Q 003795 414 DVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEA----------GVNFFSIS 483 (795)
Q Consensus 414 ~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el----------~~~~~~is 483 (795)
+-.++.+.|-++.+.. ++..+. .....+++|+||||||||++++.||..+ +..++.++
T Consensus 178 ~~~l~~~igr~~ei~~---~~~~L~---------~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~ 245 (731)
T TIGR02639 178 NGKIDPLIGREDELER---TIQVLC---------RRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLD 245 (731)
T ss_pred cCCCCcccCcHHHHHH---HHHHHh---------cCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEec
Confidence 3456667776655543 333221 1123458999999999999999999976 66788888
Q ss_pred cccee--hhhhccchhhHHhHHHHHHhcCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcccCCCcEEEEe
Q 003795 484 ASQFV--EIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIA 561 (795)
Q Consensus 484 ~se~~--~~~~g~~~~~l~~lf~~ar~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVIa 561 (795)
++.+. ..|.|+....++.+|+.+....++|+||||+|.+.+... .++|.. ...+.|...+. ++.+.+|+
T Consensus 246 ~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~---~~~~~~--~~~~~L~~~l~----~g~i~~Ig 316 (731)
T TIGR02639 246 MGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGA---TSGGSM--DASNLLKPALS----SGKLRCIG 316 (731)
T ss_pred HHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCC---CCCccH--HHHHHHHHHHh----CCCeEEEE
Confidence 88776 458888888999999999877889999999999976431 122221 12333443333 56799999
Q ss_pred ccCCCC-----CCCccccCCCcccceecCCCCCHHHHHHHHHHHHccC----C-CCChhhHHHHHhhCCCCc-----HHH
Q 003795 562 STNRPD-----ILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKK----P-MADDVDYLAVASMTDGMV-----GAE 626 (795)
Q Consensus 562 tTN~~d-----~LdpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~----~-~~~d~dl~~LA~~t~G~s-----gad 626 (795)
+||..+ ..|++|.| ||. .|.|+.|+.+++..|++...... . ...+..+..++..+..|- +.-
T Consensus 317 aTt~~e~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~~r~~P~k 393 (731)
T TIGR02639 317 STTYEEYKNHFEKDRALSR--RFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYINDRFLPDK 393 (731)
T ss_pred ecCHHHHHHHhhhhHHHHH--hCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcccccccCCHH
Confidence 998643 47999999 997 79999999999999999665432 1 123444666666665543 344
Q ss_pred HHHHHHHHHHHHHHc----CCCccCHHHHHHHHHHH
Q 003795 627 LANIVEVAAINMMRD----GRTEITTDDLLQAAQIE 658 (795)
Q Consensus 627 L~~lv~~A~~~A~~~----~~~~It~edl~~Al~~~ 658 (795)
...++++|+...... ....|+.+|+..++...
T Consensus 394 ai~lld~a~a~~~~~~~~~~~~~v~~~~i~~~i~~~ 429 (731)
T TIGR02639 394 AIDVIDEAGASFRLRPKAKKKANVSVKDIENVVAKM 429 (731)
T ss_pred HHHHHHHhhhhhhcCcccccccccCHHHHHHHHHHH
Confidence 457778776543322 23459999999998743
No 67
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.50 E-value=3.7e-13 Score=152.67 Aligned_cols=206 Identities=20% Similarity=0.260 Sum_probs=146.6
Q ss_pred ccCccccccCccCchHHHHHHHHHHHhccccccccccCcccCCceEEECCCCCchhHHHHHhhhhcccc-----------
Q 003795 410 ERGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVN----------- 478 (795)
Q Consensus 410 ~~~~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el~~~----------- 478 (795)
++.++..|+++.|.+..+..+..++.. -+++..++|+||+||||||+|+++|..++..
T Consensus 10 ~KyRP~~f~dvVGQe~iv~~L~~~i~~-----------~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C 78 (484)
T PRK14956 10 RKYRPQFFRDVIHQDLAIGALQNALKS-----------GKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNEC 78 (484)
T ss_pred HHhCCCCHHHHhChHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCC
Confidence 345678899999988888777766542 1244568999999999999999999987652
Q ss_pred -------------EEEeeccceehhhhccchhhHHhHHHHHH----hcCCceeEhHHHHHHhhhccCCCCCCcchHHHHH
Q 003795 479 -------------FFSISASQFVEIYVGVGASRVRSLYQEAK----DNAPSVVFIDELDAVGRERGLIKGSGGQERDATL 541 (795)
Q Consensus 479 -------------~~~is~se~~~~~~g~~~~~l~~lf~~ar----~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l 541 (795)
++.++.+ ...+...++.+.+.+. ...+.|++|||+|.+... .+
T Consensus 79 ~sC~~i~~g~~~dviEIdaa------s~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~--------------A~ 138 (484)
T PRK14956 79 TSCLEITKGISSDVLEIDAA------SNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQ--------------SF 138 (484)
T ss_pred cHHHHHHccCCccceeechh------hcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHH--------------HH
Confidence 1222211 1112234455555443 234569999999998654 78
Q ss_pred HHHHHhhhcccCCCcEEEEeccCCCCCCCccccCCCcccceecCCCCCHHHHHHHHHHHHccCCCC-ChhhHHHHHhhCC
Q 003795 542 NQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTD 620 (795)
Q Consensus 542 ~~LL~~ld~~~~~~~VlVIatTN~~d~LdpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~~~~-~d~dl~~LA~~t~ 620 (795)
+.||..|+ ....++++|.+|+.+..|.+++++ |+. .+.|.+++.++....++..+....+. ++..+..++..+.
T Consensus 139 NALLKtLE--EPp~~viFILaTte~~kI~~TI~S--RCq-~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~ 213 (484)
T PRK14956 139 NALLKTLE--EPPAHIVFILATTEFHKIPETILS--RCQ-DFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGD 213 (484)
T ss_pred HHHHHHhh--cCCCceEEEeecCChhhccHHHHh--hhh-eeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 99999998 456789999899989999999999 764 68898998888888888777655443 4455778888887
Q ss_pred CCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Q 003795 621 GMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQ 656 (795)
Q Consensus 621 G~sgadL~~lv~~A~~~A~~~~~~~It~edl~~Al~ 656 (795)
|- .++..+++..+... ....||.+++.+.+.
T Consensus 214 Gd-~RdAL~lLeq~i~~----~~~~it~~~V~~~lg 244 (484)
T PRK14956 214 GS-VRDMLSFMEQAIVF----TDSKLTGVKIRKMIG 244 (484)
T ss_pred Ch-HHHHHHHHHHHHHh----CCCCcCHHHHHHHhC
Confidence 64 55555777765532 233589888877664
No 68
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.49 E-value=6.2e-13 Score=138.93 Aligned_cols=212 Identities=22% Similarity=0.257 Sum_probs=159.2
Q ss_pred ccccccCccCchHHHHHHHHHHHhccccccccccCcccCCceEEECCCCCchhHHHHHhhhhccccEEEeeccceehhhh
Q 003795 413 VDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYV 492 (795)
Q Consensus 413 ~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~se~~~~~~ 492 (795)
.+..|++..|..+.+..++=.+.+-+.+ -.....+||+||||.||||||..||.+++..+-..++..+..
T Consensus 21 RP~~l~efiGQ~~vk~~L~ifI~AAk~r-------~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK--- 90 (332)
T COG2255 21 RPKTLDEFIGQEKVKEQLQIFIKAAKKR-------GEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEK--- 90 (332)
T ss_pred CcccHHHhcChHHHHHHHHHHHHHHHhc-------CCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccC---
Confidence 4677888899998887777665543211 122345999999999999999999999999887776654322
Q ss_pred ccchhhHHhHHHHHHhcCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhccc----------------CCCc
Q 003795 493 GVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE----------------GRGN 556 (795)
Q Consensus 493 g~~~~~l~~lf~~ar~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~----------------~~~~ 556 (795)
.+.+..++... ...+|+|||||+.+.+. +-..|+..|+++. +-..
T Consensus 91 ---~gDlaaiLt~L--e~~DVLFIDEIHrl~~~--------------vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLpp 151 (332)
T COG2255 91 ---PGDLAAILTNL--EEGDVLFIDEIHRLSPA--------------VEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPP 151 (332)
T ss_pred ---hhhHHHHHhcC--CcCCeEEEehhhhcChh--------------HHHHhhhhhhheeEEEEEccCCccceEeccCCC
Confidence 23333344332 34579999999999764 4555566666542 1246
Q ss_pred EEEEeccCCCCCCCccccCCCcccceecCCCCCHHHHHHHHHHHHccCCCCC-hhhHHHHHhhCCCCcHHHHHHHHHHHH
Q 003795 557 VITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMAD-DVDYLAVASMTDGMVGAELANIVEVAA 635 (795)
Q Consensus 557 VlVIatTN~~d~LdpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~~~~~-d~dl~~LA~~t~G~sgadL~~lv~~A~ 635 (795)
+.+|++|.+...|...|+. ||.....+..++.++...|+........+.- +.....+|+++.| +++-...|+++..
T Consensus 152 FTLIGATTr~G~lt~PLrd--RFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRG-TPRIAnRLLrRVR 228 (332)
T COG2255 152 FTLIGATTRAGMLTNPLRD--RFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRG-TPRIANRLLRRVR 228 (332)
T ss_pred eeEeeeccccccccchhHH--hcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccC-CcHHHHHHHHHHH
Confidence 8899999999999999988 9999999999999999999998776655442 3346678888886 5666668888888
Q ss_pred HHHHHcCCCccCHHHHHHHHH
Q 003795 636 INMMRDGRTEITTDDLLQAAQ 656 (795)
Q Consensus 636 ~~A~~~~~~~It~edl~~Al~ 656 (795)
-.|.-.+...|+.+-...|+.
T Consensus 229 Dfa~V~~~~~I~~~ia~~aL~ 249 (332)
T COG2255 229 DFAQVKGDGDIDRDIADKALK 249 (332)
T ss_pred HHHHHhcCCcccHHHHHHHHH
Confidence 888888888899988888876
No 69
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.48 E-value=8.5e-13 Score=147.31 Aligned_cols=205 Identities=20% Similarity=0.252 Sum_probs=143.8
Q ss_pred cCccccccCccCchHHHHHHHHHHHhccccccccccCcccCCceEEECCCCCchhHHHHHhhhhcccc------------
Q 003795 411 RGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVN------------ 478 (795)
Q Consensus 411 ~~~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el~~~------------ 478 (795)
+..+..|+++.|.+..+..+.+.+.. -+++..++|+||+|+||||+|+++|..+...
T Consensus 9 kyrP~~~~~iiGq~~~~~~l~~~~~~-----------~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~ 77 (363)
T PRK14961 9 KWRPQYFRDIIGQKHIVTAISNGLSL-----------GRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCI 77 (363)
T ss_pred HhCCCchhhccChHHHHHHHHHHHHc-----------CCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCH
Confidence 34678899999999888777665542 1345668999999999999999999987532
Q ss_pred ------------EEEeeccceehhhhccchhhHHhHHHHHHhc----CCceeEhHHHHHHhhhccCCCCCCcchHHHHHH
Q 003795 479 ------------FFSISASQFVEIYVGVGASRVRSLYQEAKDN----APSVVFIDELDAVGRERGLIKGSGGQERDATLN 542 (795)
Q Consensus 479 ------------~~~is~se~~~~~~g~~~~~l~~lf~~ar~~----~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~ 542 (795)
++.++.+. ......++.+.+.+... ...+++|||+|.+... .++
T Consensus 78 ~c~~~~~~~~~d~~~~~~~~------~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~--------------a~n 137 (363)
T PRK14961 78 ICKEIEKGLCLDLIEIDAAS------RTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRH--------------SFN 137 (363)
T ss_pred HHHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHH--------------HHH
Confidence 11111110 01223345555554322 2459999999988543 677
Q ss_pred HHHHhhhcccCCCcEEEEeccCCCCCCCccccCCCcccceecCCCCCHHHHHHHHHHHHccCCC-CChhhHHHHHhhCCC
Q 003795 543 QLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPM-ADDVDYLAVASMTDG 621 (795)
Q Consensus 543 ~LL~~ld~~~~~~~VlVIatTN~~d~LdpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~~~-~~d~dl~~LA~~t~G 621 (795)
.|+..++. ...++.+|.+|+.++.+.+++.+ |+ ..+.|++|+.++..++++..++..+. .++..+..++..+.|
T Consensus 138 aLLk~lEe--~~~~~~fIl~t~~~~~l~~tI~S--Rc-~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G 212 (363)
T PRK14961 138 ALLKTLEE--PPQHIKFILATTDVEKIPKTILS--RC-LQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHG 212 (363)
T ss_pred HHHHHHhc--CCCCeEEEEEcCChHhhhHHHHh--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 88888883 45567777777778889999988 66 47899999999999999987776543 344456778888765
Q ss_pred CcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Q 003795 622 MVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQ 656 (795)
Q Consensus 622 ~sgadL~~lv~~A~~~A~~~~~~~It~edl~~Al~ 656 (795)
+.+++.++++.+.. .+...|+.+++.+++.
T Consensus 213 -~~R~al~~l~~~~~----~~~~~It~~~v~~~l~ 242 (363)
T PRK14961 213 -SMRDALNLLEHAIN----LGKGNINIKNVTDMLG 242 (363)
T ss_pred -CHHHHHHHHHHHHH----hcCCCCCHHHHHHHHC
Confidence 56667777776542 2456799999988764
No 70
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.48 E-value=2.9e-13 Score=156.96 Aligned_cols=204 Identities=17% Similarity=0.223 Sum_probs=145.6
Q ss_pred cCccccccCccCchHHHHHHHHHHHhccccccccccCcccCCceEEECCCCCchhHHHHHhhhhcccc------------
Q 003795 411 RGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVN------------ 478 (795)
Q Consensus 411 ~~~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el~~~------------ 478 (795)
+.....|+++.|.+..+..+.+++.. -+++..+||+||+|+||||+++.||+.+.+.
T Consensus 9 KYRPqtFddVIGQe~vv~~L~~al~~-----------gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~P 77 (700)
T PRK12323 9 KWRPRDFTTLVGQEHVVRALTHALEQ-----------QRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQP 77 (700)
T ss_pred HhCCCcHHHHcCcHHHHHHHHHHHHh-----------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCC
Confidence 34678899999999998877776652 2345668999999999999999999987651
Q ss_pred -----------------EEEeeccceehhhhccchhhHHhHHHHHHh----cCCceeEhHHHHHHhhhccCCCCCCcchH
Q 003795 479 -----------------FFSISASQFVEIYVGVGASRVRSLYQEAKD----NAPSVVFIDELDAVGRERGLIKGSGGQER 537 (795)
Q Consensus 479 -----------------~~~is~se~~~~~~g~~~~~l~~lf~~ar~----~~p~Il~IDEID~l~~~r~~~~~Sgge~~ 537 (795)
++.++.+. ..+...++.+.+.+.. ....|++|||+|.+...
T Consensus 78 CG~C~sC~~I~aG~hpDviEIdAas------~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~------------ 139 (700)
T PRK12323 78 CGQCRACTEIDAGRFVDYIEMDAAS------NRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNH------------ 139 (700)
T ss_pred CcccHHHHHHHcCCCCcceEecccc------cCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHH------------
Confidence 11111110 1122345666665542 34579999999998654
Q ss_pred HHHHHHHHHhhhcccCCCcEEEEeccCCCCCCCccccCCCcccceecCCCCCHHHHHHHHHHHHccCCCC-ChhhHHHHH
Q 003795 538 DATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVA 616 (795)
Q Consensus 538 r~~l~~LL~~ld~~~~~~~VlVIatTN~~d~LdpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~~~~-~d~dl~~LA 616 (795)
.+|.||..|+ ....+++||.+||.++.|.+.+++ |+ ..+.|..++.++..+.++..+....+. ++..+..|+
T Consensus 140 --AaNALLKTLE--EPP~~v~FILaTtep~kLlpTIrS--RC-q~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA 212 (700)
T PRK12323 140 --AFNAMLKTLE--EPPEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLA 212 (700)
T ss_pred --HHHHHHHhhc--cCCCCceEEEEeCChHhhhhHHHH--HH-HhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 7899999998 556788999999999999999998 76 488999999999998888777654443 233466778
Q ss_pred hhCCCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHH
Q 003795 617 SMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAA 655 (795)
Q Consensus 617 ~~t~G~sgadL~~lv~~A~~~A~~~~~~~It~edl~~Al 655 (795)
..+.| +.++..+++.++.. .+...|+.+++...+
T Consensus 213 ~~A~G-s~RdALsLLdQaia----~~~~~It~~~V~~~L 246 (700)
T PRK12323 213 QAAQG-SMRDALSLTDQAIA----YSAGNVSEEAVRGML 246 (700)
T ss_pred HHcCC-CHHHHHHHHHHHHH----hccCCcCHHHHHHHh
Confidence 77775 55566677776553 233457777666554
No 71
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.46 E-value=6.8e-13 Score=155.62 Aligned_cols=211 Identities=18% Similarity=0.207 Sum_probs=145.9
Q ss_pred cCccccccCccCchHHHHHHHHHHHhccccccccccCcccCCceEEECCCCCchhHHHHHhhhhccccEEE--eecc---
Q 003795 411 RGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFS--ISAS--- 485 (795)
Q Consensus 411 ~~~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~--is~s--- 485 (795)
+.+..+|+++.|.+..+..+.+.+.. -+++..+||+||+||||||++++||+.+++.... ..|+
T Consensus 9 KYRPqtFdEVIGQe~Vv~~L~~aL~~-----------gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~ 77 (830)
T PRK07003 9 KWRPKDFASLVGQEHVVRALTHALDG-----------GRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCR 77 (830)
T ss_pred HhCCCcHHHHcCcHHHHHHHHHHHhc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccH
Confidence 44678899999999888777766541 2345568999999999999999999987542110 0010
Q ss_pred -----------ceehh--hhccchhhHHhHHHHHHh----cCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhh
Q 003795 486 -----------QFVEI--YVGVGASRVRSLYQEAKD----NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCL 548 (795)
Q Consensus 486 -----------e~~~~--~~g~~~~~l~~lf~~ar~----~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~l 548 (795)
++.+. ....+...++.+++.+.. ....|++|||+|.+... .+|.||..|
T Consensus 78 sCr~I~~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~--------------A~NALLKtL 143 (830)
T PRK07003 78 ACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNH--------------AFNAMLKTL 143 (830)
T ss_pred HHHHHhcCCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHH--------------HHHHHHHHH
Confidence 11110 001122345666665542 23569999999998543 688899988
Q ss_pred hcccCCCcEEEEeccCCCCCCCccccCCCcccceecCCCCCHHHHHHHHHHHHccCCCC-ChhhHHHHHhhCCCCcHHHH
Q 003795 549 DGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAEL 627 (795)
Q Consensus 549 d~~~~~~~VlVIatTN~~d~LdpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~~~~-~d~dl~~LA~~t~G~sgadL 627 (795)
+ ....++.||.+||.+..|.+.|++ |+ ..+.|..++.++....|+..+....+. ++..+..|++.+.|.. ++.
T Consensus 144 E--EPP~~v~FILaTtd~~KIp~TIrS--RC-q~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~Gsm-RdA 217 (830)
T PRK07003 144 E--EPPPHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGSM-RDA 217 (830)
T ss_pred H--hcCCCeEEEEEECChhhccchhhh--he-EEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH-HHH
Confidence 8 455688999999999999999999 66 388999999999999998877655443 4455778888888754 555
Q ss_pred HHHHHHHHHHHHHcCCCccCHHHHHHHHH
Q 003795 628 ANIVEVAAINMMRDGRTEITTDDLLQAAQ 656 (795)
Q Consensus 628 ~~lv~~A~~~A~~~~~~~It~edl~~Al~ 656 (795)
.+++.++... +...|+.+++...+.
T Consensus 218 LsLLdQAia~----~~~~It~~~V~~~LG 242 (830)
T PRK07003 218 LSLTDQAIAY----SANEVTETAVSGMLG 242 (830)
T ss_pred HHHHHHHHHh----ccCCcCHHHHHHHhC
Confidence 5776665532 334577777766543
No 72
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.46 E-value=7.7e-13 Score=149.78 Aligned_cols=210 Identities=19% Similarity=0.273 Sum_probs=142.3
Q ss_pred CceEEECCCCCchhHHHHHhhhhc-----cccEEEeeccceehhhhccchh-hHHhHHHHHHhcCCceeEhHHHHHHhhh
Q 003795 452 GGILLCGPPGVGKTLLAKAVAGEA-----GVNFFSISASQFVEIYVGVGAS-RVRSLYQEAKDNAPSVVFIDELDAVGRE 525 (795)
Q Consensus 452 ~giLL~GPpGtGKTtLakaLA~el-----~~~~~~is~se~~~~~~g~~~~-~l~~lf~~ar~~~p~Il~IDEID~l~~~ 525 (795)
.+++|+||+|+|||+|+++++.++ +..++++++.++...+...... .+..+.+..+ .+++++|||++.+.+.
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l~~~ 214 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNNKMEEFKEKYR--SVDLLLIDDIQFLAGK 214 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHHH--hCCEEEEehhhhhcCC
Confidence 348999999999999999999876 4678888887766544322111 1222222232 3579999999987543
Q ss_pred ccCCCCCCcchHHHHHHHHHHhhhcccCCCcEEEEeccCCCCC---CCccccCCCccc--ceecCCCCCHHHHHHHHHHH
Q 003795 526 RGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDI---LDPALVRPGRFD--RKIFIPKPGLIGRMEILKVH 600 (795)
Q Consensus 526 r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVIatTN~~d~---LdpaLlrpgRFd--~~I~~~~Pd~~eR~~Il~~~ 600 (795)
. . ....|+..++.....+..+||++++.|.. +++.+.+ ||. ..+.|++|+.++|..|++..
T Consensus 215 ~---------~---~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~S--Rl~~g~~v~i~~pd~~~r~~il~~~ 280 (405)
T TIGR00362 215 E---------R---TQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRS--RFEWGLVVDIEPPDLETRLAILQKK 280 (405)
T ss_pred H---------H---HHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhh--hccCCeEEEeCCCCHHHHHHHHHHH
Confidence 1 1 22334444443333444566666666654 5678887 885 47999999999999999998
Q ss_pred HccCCCC-ChhhHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHHhcccccccccchhhhHHHHH
Q 003795 601 ARKKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEERGMLDRKERSSETWRQVAIN 679 (795)
Q Consensus 601 l~~~~~~-~d~dl~~LA~~t~G~sgadL~~lv~~A~~~A~~~~~~~It~edl~~Al~~~~~~~~~~~~~~~~~~~~va~h 679 (795)
+...... ++..+..+|.... -+.++|..+++.....+...+ ..||.+.+.+++..... ...+.+..+
T Consensus 281 ~~~~~~~l~~e~l~~ia~~~~-~~~r~l~~~l~~l~~~a~~~~-~~it~~~~~~~L~~~~~----------~~~~~it~~ 348 (405)
T TIGR00362 281 AEEEGLELPDEVLEFIAKNIR-SNVRELEGALNRLLAYASLTG-KPITLELAKEALKDLLR----------AKKKEITIE 348 (405)
T ss_pred HHHcCCCCCHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHhcc----------ccCCCCCHH
Confidence 8765443 3444677887765 477889999988876665544 55999999888764311 112346678
Q ss_pred HHHHHHHHHh
Q 003795 680 EAAMAVVAVN 689 (795)
Q Consensus 680 EaGhalva~~ 689 (795)
++.++|+.++
T Consensus 349 ~I~~~Va~~~ 358 (405)
T TIGR00362 349 NIQEVVAKYY 358 (405)
T ss_pred HHHHHHHHHc
Confidence 8888888876
No 73
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.46 E-value=1.3e-12 Score=149.99 Aligned_cols=205 Identities=20% Similarity=0.255 Sum_probs=141.1
Q ss_pred cCccccccCccCchHHHHHHHHHHHhccccccccccCcccCCceEEECCCCCchhHHHHHhhhhccc-------------
Q 003795 411 RGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGV------------- 477 (795)
Q Consensus 411 ~~~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el~~------------- 477 (795)
+.++..|+++.|.+..+..+..++.. -+++.+++|+|||||||||+|+++|..++.
T Consensus 7 kyRP~~~~divGq~~i~~~L~~~i~~-----------~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~ 75 (472)
T PRK14962 7 KYRPKTFSEVVGQDHVKKLIINALKK-----------NSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECR 75 (472)
T ss_pred HHCCCCHHHccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccH
Confidence 34678899999988887666655442 135666899999999999999999998754
Q ss_pred -----------cEEEeeccceehhhhccchhhHHhHHHHHHhc----CCceeEhHHHHHHhhhccCCCCCCcchHHHHHH
Q 003795 478 -----------NFFSISASQFVEIYVGVGASRVRSLYQEAKDN----APSVVFIDELDAVGRERGLIKGSGGQERDATLN 542 (795)
Q Consensus 478 -----------~~~~is~se~~~~~~g~~~~~l~~lf~~ar~~----~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~ 542 (795)
.++.++.+. ..+...++.+.+.+... ...+++|||+|.+... .++
T Consensus 76 ~c~~i~~g~~~dv~el~aa~------~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~--------------a~~ 135 (472)
T PRK14962 76 ACRSIDEGTFMDVIELDAAS------NRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKE--------------AFN 135 (472)
T ss_pred HHHHHhcCCCCccEEEeCcc------cCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHHH--------------HHH
Confidence 233333221 11223345555554422 3469999999998543 677
Q ss_pred HHHHhhhcccCCCcEEEEeccCCCCCCCccccCCCcccceecCCCCCHHHHHHHHHHHHccCCC-CChhhHHHHHhhCCC
Q 003795 543 QLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPM-ADDVDYLAVASMTDG 621 (795)
Q Consensus 543 ~LL~~ld~~~~~~~VlVIatTN~~d~LdpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~~~-~~d~dl~~LA~~t~G 621 (795)
.|+..++ ...+++++|++|+.+..+++++.+ |+. .+.|.+|+.++...+++..+..... .++..+..|+..+.|
T Consensus 136 ~LLk~LE--~p~~~vv~Ilattn~~kl~~~L~S--R~~-vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~G 210 (472)
T PRK14962 136 ALLKTLE--EPPSHVVFVLATTNLEKVPPTIIS--RCQ-VIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASG 210 (472)
T ss_pred HHHHHHH--hCCCcEEEEEEeCChHhhhHHHhc--CcE-EEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCC
Confidence 8888888 344567887777778899999998 764 8999999999999999887765432 234457778887765
Q ss_pred CcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Q 003795 622 MVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQ 656 (795)
Q Consensus 622 ~sgadL~~lv~~A~~~A~~~~~~~It~edl~~Al~ 656 (795)
+.+.+.+.+..+... .+ ..||.+++..++.
T Consensus 211 -dlR~aln~Le~l~~~---~~-~~It~e~V~~~l~ 240 (472)
T PRK14962 211 -GLRDALTMLEQVWKF---SE-GKITLETVHEALG 240 (472)
T ss_pred -CHHHHHHHHHHHHHh---cC-CCCCHHHHHHHHc
Confidence 334444555543321 22 3499999998875
No 74
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.46 E-value=6.2e-13 Score=152.51 Aligned_cols=270 Identities=17% Similarity=0.214 Sum_probs=170.9
Q ss_pred CceEEECCCCCchhHHHHHhhhhc-----cccEEEeeccceehhhhccchh-hHHhHHHHHHhcCCceeEhHHHHHHhhh
Q 003795 452 GGILLCGPPGVGKTLLAKAVAGEA-----GVNFFSISASQFVEIYVGVGAS-RVRSLYQEAKDNAPSVVFIDELDAVGRE 525 (795)
Q Consensus 452 ~giLL~GPpGtGKTtLakaLA~el-----~~~~~~is~se~~~~~~g~~~~-~l~~lf~~ar~~~p~Il~IDEID~l~~~ 525 (795)
.+++|+||+|+|||+|+++++.++ +..++++++.++...+...... ....+.+..+ .+++++|||++.+.+.
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l~~~ 226 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYR--SVDVLLIDDIQFLAGK 226 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHcCcHHHHHHHHh--cCCEEEEehhhhhcCC
Confidence 348999999999999999999976 4557788888776554433221 1122222222 4679999999988543
Q ss_pred ccCCCCCCcchHHHHHHHHHHhhhcccCCCcEEEEeccCCCCC---CCccccCCCccc--ceecCCCCCHHHHHHHHHHH
Q 003795 526 RGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDI---LDPALVRPGRFD--RKIFIPKPGLIGRMEILKVH 600 (795)
Q Consensus 526 r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVIatTN~~d~---LdpaLlrpgRFd--~~I~~~~Pd~~eR~~Il~~~ 600 (795)
. . ....|+..++.+...+..+||+++..|.. +++.+.+ ||. .++.+.+|+.++|..|++..
T Consensus 227 ~---------~---~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~S--Rl~~gl~v~i~~pd~~~r~~il~~~ 292 (450)
T PRK00149 227 E---------R---TQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRS--RFEWGLTVDIEPPDLETRIAILKKK 292 (450)
T ss_pred H---------H---HHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHh--HhcCCeeEEecCCCHHHHHHHHHHH
Confidence 1 1 23344444444334445567777666654 6788888 885 58999999999999999998
Q ss_pred HccCCCC-ChhhHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHHhcccccccccchhhhHHHHH
Q 003795 601 ARKKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEERGMLDRKERSSETWRQVAIN 679 (795)
Q Consensus 601 l~~~~~~-~d~dl~~LA~~t~G~sgadL~~lv~~A~~~A~~~~~~~It~edl~~Al~~~~~~~~~~~~~~~~~~~~va~h 679 (795)
+...+.. ++..+..||.... -+.++|..+++.....+...+ ..||.+.+.+++..... ...+.+...
T Consensus 293 ~~~~~~~l~~e~l~~ia~~~~-~~~R~l~~~l~~l~~~~~~~~-~~it~~~~~~~l~~~~~----------~~~~~~~~~ 360 (450)
T PRK00149 293 AEEEGIDLPDEVLEFIAKNIT-SNVRELEGALNRLIAYASLTG-KPITLELAKEALKDLLA----------AQKKKITIE 360 (450)
T ss_pred HHHcCCCCCHHHHHHHHcCcC-CCHHHHHHHHHHHHHHHHhhC-CCCCHHHHHHHHHHhhc----------cCCCCCCHH
Confidence 8765432 3444777787765 477888888888776665554 45999999999874321 111234566
Q ss_pred HHHHHHHHHhcCCCCccceEEEecCCCc----cccceeecccchhhhhccccHHHHHHHHHHHhChHHHHHHHhCCCCcc
Q 003795 680 EAAMAVVAVNFPDLKNIEFVTIAPRAGR----ELGYVRMKMDHMKFKEGMLSRQSLLDHITVQLAPRAADELWCGEGQLS 755 (795)
Q Consensus 680 EaGhalva~~l~~~~~i~~vtI~pr~g~----~lG~~~~~~~e~~~~~~~~tr~~ll~~I~vlLaGRaAEel~~G~~~vs 755 (795)
++-.+|+.++--. ...+.-..| .. +-...+|.-.+. .-. -+..|.-.+|||-.-.|+.+...+.
T Consensus 361 ~i~~~v~~~~~i~---~~~l~~~~R-~~~~~~aR~iamyl~~~~----~~~----s~~~Ig~~fg~rdhstV~~a~~~i~ 428 (450)
T PRK00149 361 NIQKVVAEYYNIK---VSDLKSKSR-TRNIARPRQIAMYLAKEL----TDL----SLPEIGRAFGGRDHTTVLHAVRKIE 428 (450)
T ss_pred HHHHHHHHHcCCC---HHHHhCCCC-CcccChHHHHHHHHHHHh----cCC----CHHHHHHHcCCCCHhHHHHHHHHHH
Confidence 6667777765221 122211111 11 112223332221 112 2788999999999888888876565
Q ss_pred cchhhh
Q 003795 756 TIWAET 761 (795)
Q Consensus 756 tGa~~D 761 (795)
.--.+|
T Consensus 429 ~~~~~d 434 (450)
T PRK00149 429 KLLEED 434 (450)
T ss_pred HHHHhC
Confidence 544444
No 75
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.46 E-value=5.3e-13 Score=160.30 Aligned_cols=218 Identities=23% Similarity=0.309 Sum_probs=146.1
Q ss_pred ccCccCchHHHHHHHHHHHhccccccccccCcccCCceEEECCCCCchhHHHHHhhhhc----------cccEEEeeccc
Q 003795 417 FSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEA----------GVNFFSISASQ 486 (795)
Q Consensus 417 f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el----------~~~~~~is~se 486 (795)
++.+.|-++.+..+.++... ....+++|+||||||||++++.++... +..++.++.+.
T Consensus 185 ~~~liGR~~ei~~~i~iL~r------------~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~~ 252 (758)
T PRK11034 185 IDPLIGREKELERAIQVLCR------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGS 252 (758)
T ss_pred CCcCcCCCHHHHHHHHHHhc------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHHH
Confidence 44556666555444443322 123457999999999999999999754 34455555555
Q ss_pred ee--hhhhccchhhHHhHHHHHHhcCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcccCCCcEEEEeccC
Q 003795 487 FV--EIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTN 564 (795)
Q Consensus 487 ~~--~~~~g~~~~~l~~lf~~ar~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVIatTN 564 (795)
+. ..|.|.....++.++..+....++|+|||||+.+.+... .++++. ...+.|... ..++.+.+|++||
T Consensus 253 llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~---~~~g~~--d~~nlLkp~----L~~g~i~vIgATt 323 (758)
T PRK11034 253 LLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGA---ASGGQV--DAANLIKPL----LSSGKIRVIGSTT 323 (758)
T ss_pred HhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCC---CCCcHH--HHHHHHHHH----HhCCCeEEEecCC
Confidence 44 346777778888999988887889999999999976531 122221 122222222 2467899999998
Q ss_pred CCC-----CCCccccCCCcccceecCCCCCHHHHHHHHHHHHccCCCCChhh-----HHHHHh-----hCCCCcHHHHHH
Q 003795 565 RPD-----ILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVD-----YLAVAS-----MTDGMVGAELAN 629 (795)
Q Consensus 565 ~~d-----~LdpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~~~~~d~d-----l~~LA~-----~t~G~sgadL~~ 629 (795)
..+ ..|++|.| ||+ .|.|+.|+.+++..|++.+........++. +...+. .+..+.+.....
T Consensus 324 ~~E~~~~~~~D~AL~r--RFq-~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~lPdKaid 400 (758)
T PRK11034 324 YQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAID 400 (758)
T ss_pred hHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccChHHHHH
Confidence 865 47999999 997 899999999999999997665443332222 222222 233456678889
Q ss_pred HHHHHHHHHHH----cCCCccCHHHHHHHHHHH
Q 003795 630 IVEVAAINMMR----DGRTEITTDDLLQAAQIE 658 (795)
Q Consensus 630 lv~~A~~~A~~----~~~~~It~edl~~Al~~~ 658 (795)
++++|+..... ..+..|+.+|+.+.+...
T Consensus 401 lldea~a~~~~~~~~~~~~~v~~~~i~~v~~~~ 433 (758)
T PRK11034 401 VIDEAGARARLMPVSKRKKTVNVADIESVVARI 433 (758)
T ss_pred HHHHHHHhhccCcccccccccChhhHHHHHHHH
Confidence 99998854421 223458889998887643
No 76
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.45 E-value=8.7e-13 Score=153.85 Aligned_cols=216 Identities=27% Similarity=0.330 Sum_probs=146.9
Q ss_pred ccCccccccCccCchHHHHHHHHHHHhccccccccccCcccCCceEEECCCCCchhHHHHHhhhhc----------cccE
Q 003795 410 ERGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEA----------GVNF 479 (795)
Q Consensus 410 ~~~~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el----------~~~~ 479 (795)
++.++..|+++.|....+..+..... ...+.+++|+||||||||++|+++...+ +.+|
T Consensus 57 ~~~rp~~f~~iiGqs~~i~~l~~al~------------~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~f 124 (531)
T TIGR02902 57 EKTRPKSFDEIIGQEEGIKALKAALC------------GPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAF 124 (531)
T ss_pred HhhCcCCHHHeeCcHHHHHHHHHHHh------------CCCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCE
Confidence 34456778888898887766664321 1123468999999999999999997532 3578
Q ss_pred EEeeccce-------ehhhhccchhhH---HhH----------HHHHHhcCCceeEhHHHHHHhhhccCCCCCCcchHHH
Q 003795 480 FSISASQF-------VEIYVGVGASRV---RSL----------YQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDA 539 (795)
Q Consensus 480 ~~is~se~-------~~~~~g~~~~~l---~~l----------f~~ar~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~ 539 (795)
+.++++.. .+..++.....+ ... .........+++|||||+.+...
T Consensus 125 i~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~~~-------------- 190 (531)
T TIGR02902 125 VEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELHPV-------------- 190 (531)
T ss_pred EEEccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhCCHH--------------
Confidence 88887531 111111000000 000 00112234579999999998665
Q ss_pred HHHHHHHhhhccc--------------------------CCCcEEEE-eccCCCCCCCccccCCCcccceecCCCCCHHH
Q 003795 540 TLNQLLVCLDGFE--------------------------GRGNVITI-ASTNRPDILDPALVRPGRFDRKIFIPKPGLIG 592 (795)
Q Consensus 540 ~l~~LL~~ld~~~--------------------------~~~~VlVI-atTN~~d~LdpaLlrpgRFd~~I~~~~Pd~~e 592 (795)
.++.|+..|+... -..++.+| +|||.++.++|++++ |+. .|.|++++.++
T Consensus 191 ~q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrs--R~~-~I~f~pL~~ee 267 (531)
T TIGR02902 191 QMNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRS--RCV-EIFFRPLLDEE 267 (531)
T ss_pred HHHHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhh--hhh-eeeCCCCCHHH
Confidence 5666666554310 01234444 677889999999998 875 78899999999
Q ss_pred HHHHHHHHHccCCCC-ChhhHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Q 003795 593 RMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQ 656 (795)
Q Consensus 593 R~~Il~~~l~~~~~~-~d~dl~~LA~~t~G~sgadL~~lv~~A~~~A~~~~~~~It~edl~~Al~ 656 (795)
+..|++..+++.... ++..+..++.++ .+++++.++++.|+..|..+++..|+.+|+..++.
T Consensus 268 i~~Il~~~a~k~~i~is~~al~~I~~y~--~n~Rel~nll~~Aa~~A~~~~~~~It~~dI~~vl~ 330 (531)
T TIGR02902 268 IKEIAKNAAEKIGINLEKHALELIVKYA--SNGREAVNIVQLAAGIALGEGRKRILAEDIEWVAE 330 (531)
T ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHHhh--hhHHHHHHHHHHHHHHHhhCCCcEEcHHHHHHHhC
Confidence 999999988766533 333355666655 37899999999999888888888899999999976
No 77
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.45 E-value=1.1e-12 Score=152.51 Aligned_cols=205 Identities=20% Similarity=0.257 Sum_probs=146.8
Q ss_pred cCccccccCccCchHHHHHHHHHHHhccccccccccCcccCCceEEECCCCCchhHHHHHhhhhcccc------------
Q 003795 411 RGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVN------------ 478 (795)
Q Consensus 411 ~~~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el~~~------------ 478 (795)
+.++..|+++.|.+..+..+.+.+. +-+++.++||+||+|+||||+|+++|+.+++.
T Consensus 8 KyRPktFddVIGQe~vv~~L~~aI~-----------~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~ 76 (702)
T PRK14960 8 KYRPRNFNELVGQNHVSRALSSALE-----------RGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCA 76 (702)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCH
Confidence 3467889999999988877776664 22445678999999999999999999987542
Q ss_pred ------------EEEeeccceehhhhccchhhHHhHHHHHHh----cCCceeEhHHHHHHhhhccCCCCCCcchHHHHHH
Q 003795 479 ------------FFSISASQFVEIYVGVGASRVRSLYQEAKD----NAPSVVFIDELDAVGRERGLIKGSGGQERDATLN 542 (795)
Q Consensus 479 ------------~~~is~se~~~~~~g~~~~~l~~lf~~ar~----~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~ 542 (795)
++.++.++ ..+...++.+...+.. ..+.|++|||+|.+... .++
T Consensus 77 sC~~I~~g~hpDviEIDAAs------~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~--------------A~N 136 (702)
T PRK14960 77 TCKAVNEGRFIDLIEIDAAS------RTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTH--------------SFN 136 (702)
T ss_pred HHHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHH--------------HHH
Confidence 22222221 0122345555555432 34569999999988654 678
Q ss_pred HHHHhhhcccCCCcEEEEeccCCCCCCCccccCCCcccceecCCCCCHHHHHHHHHHHHccCCCC-ChhhHHHHHhhCCC
Q 003795 543 QLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDG 621 (795)
Q Consensus 543 ~LL~~ld~~~~~~~VlVIatTN~~d~LdpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~~~~-~d~dl~~LA~~t~G 621 (795)
.|+..++ ....++.+|.+|+.+..+++.+++ |+. .+.|.+++.++....++..+....+. ++..+..++..+.|
T Consensus 137 ALLKtLE--EPP~~v~FILaTtd~~kIp~TIlS--RCq-~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~G 211 (702)
T PRK14960 137 ALLKTLE--EPPEHVKFLFATTDPQKLPITVIS--RCL-QFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQG 211 (702)
T ss_pred HHHHHHh--cCCCCcEEEEEECChHhhhHHHHH--hhh-eeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 8888888 345667888888888889899887 664 88999999999999998887765443 34456778887765
Q ss_pred CcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Q 003795 622 MVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQ 656 (795)
Q Consensus 622 ~sgadL~~lv~~A~~~A~~~~~~~It~edl~~Al~ 656 (795)
+.+++.+++..+.. .+...|+.+++...+.
T Consensus 212 -dLRdALnLLDQaIa----yg~g~IT~edV~~lLG 241 (702)
T PRK14960 212 -SLRDALSLTDQAIA----YGQGAVHHQDVKEMLG 241 (702)
T ss_pred -CHHHHHHHHHHHHH----hcCCCcCHHHHHHHhc
Confidence 66777777776653 2456699999887654
No 78
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.44 E-value=2.2e-12 Score=137.99 Aligned_cols=235 Identities=23% Similarity=0.344 Sum_probs=149.0
Q ss_pred ccccCccccccCccCchHHHHHHHHHHHhccccccccccCcccCCceEEECCCCCchhHHHHHhhhhcccc---EEEeec
Q 003795 408 YLERGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVN---FFSISA 484 (795)
Q Consensus 408 ~~~~~~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el~~~---~~~is~ 484 (795)
..++-.+..+++..|....+-. +.++..+.... + -.+++|+|||||||||||+.|+.....+ |++++.
T Consensus 128 LaermRPktL~dyvGQ~hlv~q-~gllrs~ieq~-------~-ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSA 198 (554)
T KOG2028|consen 128 LAERMRPKTLDDYVGQSHLVGQ-DGLLRSLIEQN-------R-IPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSA 198 (554)
T ss_pred hhhhcCcchHHHhcchhhhcCc-chHHHHHHHcC-------C-CCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEec
Confidence 4444566778887776654433 55544432211 1 1248999999999999999999987655 555554
Q ss_pred cceehhhhccchhhHHhHHHHHHh-----cCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcccCCCcEEE
Q 003795 485 SQFVEIYVGVGASRVRSLYQEAKD-----NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVIT 559 (795)
Q Consensus 485 se~~~~~~g~~~~~l~~lf~~ar~-----~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlV 559 (795)
.. .....++.+|+.+.. ..-.|+|||||+.+... ....||-.+ .++.|++
T Consensus 199 t~-------a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNks--------------QQD~fLP~V----E~G~I~l 253 (554)
T KOG2028|consen 199 TN-------AKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKS--------------QQDTFLPHV----ENGDITL 253 (554)
T ss_pred cc-------cchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhhh--------------hhhccccee----ccCceEE
Confidence 32 233567888888764 23569999999998654 344555433 3677899
Q ss_pred Eecc--CCCCCCCccccCCCcccceecCCCCCHHHHHHHHHHHHccC--------CCC------ChhhHHHHHhhCCCCc
Q 003795 560 IAST--NRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKK--------PMA------DDVDYLAVASMTDGMV 623 (795)
Q Consensus 560 IatT--N~~d~LdpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~--------~~~------~d~dl~~LA~~t~G~s 623 (795)
|++| |..-.+..+|++++| ++.+..........||.+.+.-. ++. ++--++.++..+.|-.
T Consensus 254 IGATTENPSFqln~aLlSRC~---VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDa 330 (554)
T KOG2028|consen 254 IGATTENPSFQLNAALLSRCR---VFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDA 330 (554)
T ss_pred EecccCCCccchhHHHHhccc---eeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchH
Confidence 9666 555678999999555 67788888888888887643311 111 2223677899999988
Q ss_pred HHHHHHHHHHHHHHHHHcC---CCccCHHHHHHHHHHHHhcccccccccchhhhHHHHHHH
Q 003795 624 GAELANIVEVAAINMMRDG---RTEITTDDLLQAAQIEERGMLDRKERSSETWRQVAINEA 681 (795)
Q Consensus 624 gadL~~lv~~A~~~A~~~~---~~~It~edl~~Al~~~~~~~~~~~~~~~~~~~~va~hEa 681 (795)
.+.|..|--.+...+.+.| +..++.+|+.+++....- .-+.........+.|+|..
T Consensus 331 R~aLN~Lems~~m~~tr~g~~~~~~lSidDvke~lq~s~~--~YDr~Ge~HYntISA~HKS 389 (554)
T KOG2028|consen 331 RAALNALEMSLSMFCTRSGQSSRVLLSIDDVKEGLQRSHI--LYDRAGEEHYNTISALHKS 389 (554)
T ss_pred HHHHHHHHHHHHHHHhhcCCcccceecHHHHHHHHhhccc--eecccchhHHHHHHHHHHh
Confidence 8888444332223333444 347999999999874321 1111111333455677763
No 79
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.44 E-value=2e-12 Score=149.07 Aligned_cols=215 Identities=19% Similarity=0.275 Sum_probs=151.1
Q ss_pred ccCccccccCccCchHHHHHHHHHHHhccccccccccCcccCCceEEECCCCCchhHHHHHhhhhccccEEEe-------
Q 003795 410 ERGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSI------- 482 (795)
Q Consensus 410 ~~~~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~i------- 482 (795)
++..+..|.++.|.+..+..+..++.. -+++.+++|+||+||||||+|+++|..+++.....
T Consensus 13 ~kyRP~~f~dliGq~~vv~~L~~ai~~-----------~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~ 81 (507)
T PRK06645 13 RKYRPSNFAELQGQEVLVKVLSYTILN-----------DRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKT 81 (507)
T ss_pred hhhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCC
Confidence 345678899999998888777665432 24567799999999999999999999875422100
Q ss_pred -----ecc--------ceehh--hhccchhhHHhHHHHHHhc----CCceeEhHHHHHHhhhccCCCCCCcchHHHHHHH
Q 003795 483 -----SAS--------QFVEI--YVGVGASRVRSLYQEAKDN----APSVVFIDELDAVGRERGLIKGSGGQERDATLNQ 543 (795)
Q Consensus 483 -----s~s--------e~~~~--~~g~~~~~l~~lf~~ar~~----~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~ 543 (795)
+|. ++... ....+...++.+++.+... ...|++|||++.+... .++.
T Consensus 82 C~~C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~--------------a~na 147 (507)
T PRK06645 82 CEQCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKG--------------AFNA 147 (507)
T ss_pred CCCChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHH--------------HHHH
Confidence 000 00000 0011234566777766543 3468999999988543 6888
Q ss_pred HHHhhhcccCCCcEEEEeccCCCCCCCccccCCCcccceecCCCCCHHHHHHHHHHHHccCCCC-ChhhHHHHHhhCCCC
Q 003795 544 LLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGM 622 (795)
Q Consensus 544 LL~~ld~~~~~~~VlVIatTN~~d~LdpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~~~~-~d~dl~~LA~~t~G~ 622 (795)
|+..++ ....++++|.+|+.++.+++++++ |+ ..+.|.+++.++...+++..++..... ++..+..++..+.|
T Consensus 148 LLk~LE--epp~~~vfI~aTte~~kI~~tI~S--Rc-~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s~G- 221 (507)
T PRK06645 148 LLKTLE--EPPPHIIFIFATTEVQKIPATIIS--RC-QRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEG- 221 (507)
T ss_pred HHHHHh--hcCCCEEEEEEeCChHHhhHHHHh--cc-eEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 888888 455678888888888899999988 66 378899999999999999888765543 33446778888775
Q ss_pred cHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Q 003795 623 VGAELANIVEVAAINMMRDGRTEITTDDLLQAAQ 656 (795)
Q Consensus 623 sgadL~~lv~~A~~~A~~~~~~~It~edl~~Al~ 656 (795)
+.+++.++++.+...+.. ....||.+++...+.
T Consensus 222 slR~al~~Ldkai~~~~~-~~~~It~~~V~~llg 254 (507)
T PRK06645 222 SARDAVSILDQAASMSAK-SDNIISPQVINQMLG 254 (507)
T ss_pred CHHHHHHHHHHHHHhhcc-CCCCcCHHHHHHHHC
Confidence 778888888887654421 123689999888765
No 80
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.43 E-value=1.3e-12 Score=151.34 Aligned_cols=205 Identities=17% Similarity=0.222 Sum_probs=147.9
Q ss_pred cCccccccCccCchHHHHHHHHHHHhccccccccccCcccCCceEEECCCCCchhHHHHHhhhhcccc------------
Q 003795 411 RGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVN------------ 478 (795)
Q Consensus 411 ~~~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el~~~------------ 478 (795)
+.++..|+++.|.+.++..+.+.+.. -+++..+||+||+|+||||+|+++|+.+++.
T Consensus 9 kyRP~~f~divGq~~v~~~L~~~~~~-----------~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~ 77 (509)
T PRK14958 9 KWRPRCFQEVIGQAPVVRALSNALDQ-----------QYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCE 77 (509)
T ss_pred HHCCCCHHHhcCCHHHHHHHHHHHHh-----------CCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCH
Confidence 44678899999999998877776642 2345668999999999999999999987542
Q ss_pred ------------EEEeeccceehhhhccchhhHHhHHHHHHh----cCCceeEhHHHHHHhhhccCCCCCCcchHHHHHH
Q 003795 479 ------------FFSISASQFVEIYVGVGASRVRSLYQEAKD----NAPSVVFIDELDAVGRERGLIKGSGGQERDATLN 542 (795)
Q Consensus 479 ------------~~~is~se~~~~~~g~~~~~l~~lf~~ar~----~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~ 542 (795)
++.++.+. ..+...++.+.+.+.. ....|++|||+|.+... .++
T Consensus 78 ~C~~i~~g~~~d~~eidaas------~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~--------------a~n 137 (509)
T PRK14958 78 NCREIDEGRFPDLFEVDAAS------RTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGH--------------SFN 137 (509)
T ss_pred HHHHHhcCCCceEEEEcccc------cCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHH--------------HHH
Confidence 22232221 1122345566655432 33469999999998654 688
Q ss_pred HHHHhhhcccCCCcEEEEeccCCCCCCCccccCCCcccceecCCCCCHHHHHHHHHHHHccCCCC-ChhhHHHHHhhCCC
Q 003795 543 QLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDG 621 (795)
Q Consensus 543 ~LL~~ld~~~~~~~VlVIatTN~~d~LdpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~~~~-~d~dl~~LA~~t~G 621 (795)
.|+..|+ ....++.+|.+|+.+..+.+.+++ |+ ..+.|.+++..+....++..+...+.. ++..+..++..+.|
T Consensus 138 aLLk~LE--epp~~~~fIlattd~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s~G 212 (509)
T PRK14958 138 ALLKTLE--EPPSHVKFILATTDHHKLPVTVLS--RC-LQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANG 212 (509)
T ss_pred HHHHHHh--ccCCCeEEEEEECChHhchHHHHH--Hh-hhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 9999998 445678888888888899989988 65 378899999988888888777665443 33446678877764
Q ss_pred CcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Q 003795 622 MVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQ 656 (795)
Q Consensus 622 ~sgadL~~lv~~A~~~A~~~~~~~It~edl~~Al~ 656 (795)
+.+++.+++..+... +...||.+++...+.
T Consensus 213 -slR~al~lLdq~ia~----~~~~It~~~V~~~lg 242 (509)
T PRK14958 213 -SVRDALSLLDQSIAY----GNGKVLIADVKTMLG 242 (509)
T ss_pred -cHHHHHHHHHHHHhc----CCCCcCHHHHHHHHC
Confidence 677888888766422 455799998887754
No 81
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.42 E-value=2.6e-12 Score=151.17 Aligned_cols=204 Identities=21% Similarity=0.287 Sum_probs=144.4
Q ss_pred CccccccCccCchHHHHHHHHHHHhccccccccccCcccCCceEEECCCCCchhHHHHHhhhhccccE------------
Q 003795 412 GVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNF------------ 479 (795)
Q Consensus 412 ~~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el~~~~------------ 479 (795)
..+..|+++.|.+..+..+.+.+.. -+++..+||+||+|+||||+|+++|..+++..
T Consensus 10 yRP~~f~divGQe~vv~~L~~~l~~-----------~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~ 78 (647)
T PRK07994 10 WRPQTFAEVVGQEHVLTALANALDL-----------GRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDN 78 (647)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHH
Confidence 3568899999999888777766552 13455689999999999999999999876531
Q ss_pred ------------EEeeccceehhhhccchhhHHhHHHHHHh----cCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHH
Q 003795 480 ------------FSISASQFVEIYVGVGASRVRSLYQEAKD----NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQ 543 (795)
Q Consensus 480 ------------~~is~se~~~~~~g~~~~~l~~lf~~ar~----~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~ 543 (795)
+.++.+. ..+...++.+.+.+.. ....|++|||+|.+... .++.
T Consensus 79 C~~i~~g~~~D~ieidaas------~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~--------------a~NA 138 (647)
T PRK07994 79 CREIEQGRFVDLIEIDAAS------RTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRH--------------SFNA 138 (647)
T ss_pred HHHHHcCCCCCceeecccc------cCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHH--------------HHHH
Confidence 1222111 0122345555555432 34569999999998654 7899
Q ss_pred HHHhhhcccCCCcEEEEeccCCCCCCCccccCCCcccceecCCCCCHHHHHHHHHHHHccCCCC-ChhhHHHHHhhCCCC
Q 003795 544 LLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGM 622 (795)
Q Consensus 544 LL~~ld~~~~~~~VlVIatTN~~d~LdpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~~~~-~d~dl~~LA~~t~G~ 622 (795)
||..|+ ....++++|.+|+.+..|.+.+++ |+ ..+.|.+++.++....+...+....+. ++..+..++..+.|
T Consensus 139 LLKtLE--EPp~~v~FIL~Tt~~~kLl~TI~S--RC-~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~G- 212 (647)
T PRK07994 139 LLKTLE--EPPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADG- 212 (647)
T ss_pred HHHHHH--cCCCCeEEEEecCCccccchHHHh--hh-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 999999 556778888888889999999998 65 589999999999999988877654433 33446678888776
Q ss_pred cHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Q 003795 623 VGAELANIVEVAAINMMRDGRTEITTDDLLQAAQ 656 (795)
Q Consensus 623 sgadL~~lv~~A~~~A~~~~~~~It~edl~~Al~ 656 (795)
+.++..+++..+... +...|+.+++...+.
T Consensus 213 s~R~Al~lldqaia~----~~~~it~~~v~~~lg 242 (647)
T PRK07994 213 SMRDALSLTDQAIAS----GNGQVTTDDVSAMLG 242 (647)
T ss_pred CHHHHHHHHHHHHHh----cCCCcCHHHHHHHHc
Confidence 455555777765422 344578777776543
No 82
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.42 E-value=6.9e-12 Score=142.37 Aligned_cols=199 Identities=27% Similarity=0.375 Sum_probs=136.5
Q ss_pred ccccccCccCchHHHHH---HHHHHHhccccccccccCcccCCceEEECCCCCchhHHHHHhhhhccccEEEeeccceeh
Q 003795 413 VDVKFSDVAGLGKIRLE---LEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVE 489 (795)
Q Consensus 413 ~~~~f~~~~gl~~~~~~---l~~lv~~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~se~~~ 489 (795)
.+..|++..|....+.. +..++.. ..+.+++|+|||||||||||++|+...+..++.++....
T Consensus 7 RP~~l~d~vGq~~~v~~~~~L~~~i~~------------~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~-- 72 (413)
T PRK13342 7 RPKTLDEVVGQEHLLGPGKPLRRMIEA------------GRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTS-- 72 (413)
T ss_pred CCCCHHHhcCcHHHhCcchHHHHHHHc------------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccc--
Confidence 45667788887766544 4443321 112358999999999999999999999999988887532
Q ss_pred hhhccchhhHHhHHHHHH----hcCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcccCCCcEEEEecc--
Q 003795 490 IYVGVGASRVRSLYQEAK----DNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIAST-- 563 (795)
Q Consensus 490 ~~~g~~~~~l~~lf~~ar----~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVIatT-- 563 (795)
+...++.+++.+. .....++||||+|.+... ..+.|+..++ ...+++|++|
T Consensus 73 -----~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~--------------~q~~LL~~le----~~~iilI~att~ 129 (413)
T PRK13342 73 -----GVKDLREVIEEARQRRSAGRRTILFIDEIHRFNKA--------------QQDALLPHVE----DGTITLIGATTE 129 (413)
T ss_pred -----cHHHHHHHHHHHHHhhhcCCceEEEEechhhhCHH--------------HHHHHHHHhh----cCcEEEEEeCCC
Confidence 1233455555543 224579999999988543 4556666665 2456666554
Q ss_pred CCCCCCCccccCCCcccceecCCCCCHHHHHHHHHHHHccC--C--CCChhhHHHHHhhCCCCcHHHHHHHHHHHHHHHH
Q 003795 564 NRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKK--P--MADDVDYLAVASMTDGMVGAELANIVEVAAINMM 639 (795)
Q Consensus 564 N~~d~LdpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~--~--~~~d~dl~~LA~~t~G~sgadL~~lv~~A~~~A~ 639 (795)
|....+++++++ |+ ..+.|++++.++...+++..+... . ..++..+..++..+.| ..+.+.+++..+...
T Consensus 130 n~~~~l~~aL~S--R~-~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~G-d~R~aln~Le~~~~~-- 203 (413)
T PRK13342 130 NPSFEVNPALLS--RA-QVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANG-DARRALNLLELAALG-- 203 (413)
T ss_pred ChhhhccHHHhc--cc-eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHHHc--
Confidence 445578999998 77 588999999999999998876542 1 1233346677777754 555566666665532
Q ss_pred HcCCCccCHHHHHHHHHH
Q 003795 640 RDGRTEITTDDLLQAAQI 657 (795)
Q Consensus 640 ~~~~~~It~edl~~Al~~ 657 (795)
...|+.+++..++..
T Consensus 204 ---~~~It~~~v~~~~~~ 218 (413)
T PRK13342 204 ---VDSITLELLEEALQK 218 (413)
T ss_pred ---cCCCCHHHHHHHHhh
Confidence 456999999998874
No 83
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.40 E-value=4.1e-12 Score=145.51 Aligned_cols=204 Identities=22% Similarity=0.261 Sum_probs=148.3
Q ss_pred cCccccccCccCchHHHHHHHHHHHhccccccccccCcccCCceEEECCCCCchhHHHHHhhhhccc-------------
Q 003795 411 RGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGV------------- 477 (795)
Q Consensus 411 ~~~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el~~------------- 477 (795)
+..+..|+++.|.+..+..+.++... -+++.++||+||+|+||||+|+++|..+++
T Consensus 6 KyRP~~f~dliGQe~vv~~L~~a~~~-----------~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~ 74 (491)
T PRK14964 6 KYRPSSFKDLVGQDVLVRILRNAFTL-----------NKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCH 74 (491)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccH
Confidence 34678899999988888777655442 245677999999999999999999986532
Q ss_pred -----------cEEEeeccceehhhhccchhhHHhHHHHHHhc----CCceeEhHHHHHHhhhccCCCCCCcchHHHHHH
Q 003795 478 -----------NFFSISASQFVEIYVGVGASRVRSLYQEAKDN----APSVVFIDELDAVGRERGLIKGSGGQERDATLN 542 (795)
Q Consensus 478 -----------~~~~is~se~~~~~~g~~~~~l~~lf~~ar~~----~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~ 542 (795)
+++.++.++ ..+...++.+.+.+... .+.+++|||+|.+... .++
T Consensus 75 ~C~~i~~~~~~Dv~eidaas------~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~--------------A~N 134 (491)
T PRK14964 75 NCISIKNSNHPDVIEIDAAS------NTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSNS--------------AFN 134 (491)
T ss_pred HHHHHhccCCCCEEEEeccc------CCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCHH--------------HHH
Confidence 233343322 11234566677666543 3469999999988543 788
Q ss_pred HHHHhhhcccCCCcEEEEeccCCCCCCCccccCCCcccceecCCCCCHHHHHHHHHHHHccCCCC-ChhhHHHHHhhCCC
Q 003795 543 QLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDG 621 (795)
Q Consensus 543 ~LL~~ld~~~~~~~VlVIatTN~~d~LdpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~~~~-~d~dl~~LA~~t~G 621 (795)
.|+..++ ....++++|.+|+.++.+.+.+++ |+. .+.|.+++.++....+...+...+.. ++..+..++..+.|
T Consensus 135 aLLK~LE--ePp~~v~fIlatte~~Kl~~tI~S--Rc~-~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~G 209 (491)
T PRK14964 135 ALLKTLE--EPAPHVKFILATTEVKKIPVTIIS--RCQ-RFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSG 209 (491)
T ss_pred HHHHHHh--CCCCCeEEEEEeCChHHHHHHHHH--hhe-eeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 9999998 455678888888888899999998 653 78999999999999998877665443 44457778888864
Q ss_pred CcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHH
Q 003795 622 MVGAELANIVEVAAINMMRDGRTEITTDDLLQAA 655 (795)
Q Consensus 622 ~sgadL~~lv~~A~~~A~~~~~~~It~edl~~Al 655 (795)
+.+++.++++.+.... ...||.+++...+
T Consensus 210 -slR~alslLdqli~y~----~~~It~e~V~~ll 238 (491)
T PRK14964 210 -SMRNALFLLEQAAIYS----NNKISEKSVRDLL 238 (491)
T ss_pred -CHHHHHHHHHHHHHhc----CCCCCHHHHHHHH
Confidence 7777778887766432 2468988888764
No 84
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.39 E-value=5.1e-12 Score=148.36 Aligned_cols=205 Identities=18% Similarity=0.232 Sum_probs=145.9
Q ss_pred cCccccccCccCchHHHHHHHHHHHhccccccccccCcccCCceEEECCCCCchhHHHHHhhhhcccc------------
Q 003795 411 RGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVN------------ 478 (795)
Q Consensus 411 ~~~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el~~~------------ 478 (795)
+..+..|+++.|.+..+..+.+++.. -+++..+||+||+|+||||+++++|+.+++.
T Consensus 9 KyRP~~f~dviGQe~vv~~L~~~l~~-----------~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~p 77 (618)
T PRK14951 9 KYRPRSFSEMVGQEHVVQALTNALTQ-----------QRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATP 77 (618)
T ss_pred HHCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCC
Confidence 34678899999988888777776552 2345668999999999999999999887541
Q ss_pred -----------------EEEeeccceehhhhccchhhHHhHHHHHHhc----CCceeEhHHHHHHhhhccCCCCCCcchH
Q 003795 479 -----------------FFSISASQFVEIYVGVGASRVRSLYQEAKDN----APSVVFIDELDAVGRERGLIKGSGGQER 537 (795)
Q Consensus 479 -----------------~~~is~se~~~~~~g~~~~~l~~lf~~ar~~----~p~Il~IDEID~l~~~r~~~~~Sgge~~ 537 (795)
++.++.+. ..+...++.+.+.+... ...|++|||+|.+...
T Consensus 78 Cg~C~~C~~i~~g~h~D~~eldaas------~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~------------ 139 (618)
T PRK14951 78 CGVCQACRDIDSGRFVDYTELDAAS------NRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNT------------ 139 (618)
T ss_pred CCccHHHHHHHcCCCCceeecCccc------ccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHH------------
Confidence 11111110 11223456666665432 2469999999998654
Q ss_pred HHHHHHHHHhhhcccCCCcEEEEeccCCCCCCCccccCCCcccceecCCCCCHHHHHHHHHHHHccCCCC-ChhhHHHHH
Q 003795 538 DATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVA 616 (795)
Q Consensus 538 r~~l~~LL~~ld~~~~~~~VlVIatTN~~d~LdpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~~~~-~d~dl~~LA 616 (795)
.++.|+..++ ....++.+|.+|+.+..+.+.+++ |+ ..+.|..++.++....++..+...++. ++..+..|+
T Consensus 140 --a~NaLLKtLE--EPP~~~~fIL~Ttd~~kil~TIlS--Rc-~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La 212 (618)
T PRK14951 140 --AFNAMLKTLE--EPPEYLKFVLATTDPQKVPVTVLS--RC-LQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLA 212 (618)
T ss_pred --HHHHHHHhcc--cCCCCeEEEEEECCchhhhHHHHH--hc-eeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 6888998888 455677888888888889889988 65 489999999999999998877665543 334467788
Q ss_pred hhCCCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Q 003795 617 SMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQ 656 (795)
Q Consensus 617 ~~t~G~sgadL~~lv~~A~~~A~~~~~~~It~edl~~Al~ 656 (795)
..+.| +.+++.+++..+... +...||.+++...+.
T Consensus 213 ~~s~G-slR~al~lLdq~ia~----~~~~It~~~V~~~Lg 247 (618)
T PRK14951 213 RAARG-SMRDALSLTDQAIAF----GSGQLQEAAVRQMLG 247 (618)
T ss_pred HHcCC-CHHHHHHHHHHHHHh----cCCCcCHHHHHHHHc
Confidence 87775 667777777665532 445688888877654
No 85
>PRK04195 replication factor C large subunit; Provisional
Probab=99.39 E-value=5e-12 Score=146.24 Aligned_cols=210 Identities=23% Similarity=0.307 Sum_probs=142.0
Q ss_pred cccCccccccCccCchHHHHHHHHHHHhccccccccccCcccCCceEEECCCCCchhHHHHHhhhhccccEEEeecccee
Q 003795 409 LERGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFV 488 (795)
Q Consensus 409 ~~~~~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~se~~ 488 (795)
.++..+..|+++.|..+.+..+...+..+.. -.++++++|+||||+||||+|++||++++..++.++.++..
T Consensus 5 ~eKyrP~~l~dlvg~~~~~~~l~~~l~~~~~--------g~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r 76 (482)
T PRK04195 5 VEKYRPKTLSDVVGNEKAKEQLREWIESWLK--------GKPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQR 76 (482)
T ss_pred hhhcCCCCHHHhcCCHHHHHHHHHHHHHHhc--------CCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccccc
Confidence 4556778899999999999888887765431 12256799999999999999999999999999999887643
Q ss_pred hhhhccchhhHHhHHHHHHh------cCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcccCCCcEEEEec
Q 003795 489 EIYVGVGASRVRSLYQEAKD------NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIAS 562 (795)
Q Consensus 489 ~~~~g~~~~~l~~lf~~ar~------~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVIat 562 (795)
.. ..+..+...+.. ..+.+|+|||+|.+.... .+..+..|+..++ ..+..+|++
T Consensus 77 ~~------~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~----------d~~~~~aL~~~l~----~~~~~iIli 136 (482)
T PRK04195 77 TA------DVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNE----------DRGGARAILELIK----KAKQPIILT 136 (482)
T ss_pred cH------HHHHHHHHHhhccCcccCCCCeEEEEecCccccccc----------chhHHHHHHHHHH----cCCCCEEEe
Confidence 22 112222222211 246799999999885421 0113455665555 233456667
Q ss_pred cCCCCCCCc-cccCCCcccceecCCCCCHHHHHHHHHHHHccCCCC-ChhhHHHHHhhCCCCcHHHHHHHHHHHHHHHHH
Q 003795 563 TNRPDILDP-ALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMR 640 (795)
Q Consensus 563 TN~~d~Ldp-aLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~~~~-~d~dl~~LA~~t~G~sgadL~~lv~~A~~~A~~ 640 (795)
+|.+..+++ .+++ | ...|.|++|+..+...+++..+....+. ++..+..|+..+.| |++.+++.... ..
T Consensus 137 ~n~~~~~~~k~Lrs--r-~~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~G----DlR~ain~Lq~--~a 207 (482)
T PRK04195 137 ANDPYDPSLRELRN--A-CLMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGG----DLRSAINDLQA--IA 207 (482)
T ss_pred ccCccccchhhHhc--c-ceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC----CHHHHHHHHHH--Hh
Confidence 788887777 5655 3 3489999999999999999887655432 34457778887754 66666665443 23
Q ss_pred cCCCccCHHHHHHHH
Q 003795 641 DGRTEITTDDLLQAA 655 (795)
Q Consensus 641 ~~~~~It~edl~~Al 655 (795)
.+...++.+++....
T Consensus 208 ~~~~~it~~~v~~~~ 222 (482)
T PRK04195 208 EGYGKLTLEDVKTLG 222 (482)
T ss_pred cCCCCCcHHHHHHhh
Confidence 455567777765443
No 86
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.39 E-value=1.5e-11 Score=136.92 Aligned_cols=218 Identities=22% Similarity=0.260 Sum_probs=137.7
Q ss_pred CccCchHHHHHHHHHHHhccccccccccCcccCCceEEECCCCCchhHHHHHhhhhcc---------ccEEEeeccceeh
Q 003795 419 DVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAG---------VNFFSISASQFVE 489 (795)
Q Consensus 419 ~~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el~---------~~~~~is~se~~~ 489 (795)
...|-++.+..+...+..... -..+++++|+||||||||++++.++..+. ..++++++.....
T Consensus 16 ~l~gRe~e~~~l~~~l~~~~~--------~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~ 87 (365)
T TIGR02928 16 RIVHRDEQIEELAKALRPILR--------GSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDT 87 (365)
T ss_pred CCCCcHHHHHHHHHHHHHHHc--------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCC
Confidence 455655555555444432211 12345699999999999999999998653 4677888765432
Q ss_pred h----------hh--ccc--------hhhHHhHHHHHH-hcCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhh
Q 003795 490 I----------YV--GVG--------ASRVRSLYQEAK-DNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCL 548 (795)
Q Consensus 490 ~----------~~--g~~--------~~~l~~lf~~ar-~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~l 548 (795)
. .. |.. ...+..++.... ...+.|++|||+|.+.... ...+..|+...
T Consensus 88 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~-----------~~~L~~l~~~~ 156 (365)
T TIGR02928 88 LYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDD-----------DDLLYQLSRAR 156 (365)
T ss_pred HHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCC-----------cHHHHhHhccc
Confidence 1 10 110 011233444433 2346789999999996221 11445554332
Q ss_pred hc-ccCCCcEEEEeccCCCC---CCCccccCCCccc-ceecCCCCCHHHHHHHHHHHHccC----CCCChh-h-HHHHHh
Q 003795 549 DG-FEGRGNVITIASTNRPD---ILDPALVRPGRFD-RKIFIPKPGLIGRMEILKVHARKK----PMADDV-D-YLAVAS 617 (795)
Q Consensus 549 d~-~~~~~~VlVIatTN~~d---~LdpaLlrpgRFd-~~I~~~~Pd~~eR~~Il~~~l~~~----~~~~d~-d-l~~LA~ 617 (795)
+. ...+.++.+|+++|.++ .+++.+.+ ||. ..+.|++++.++..+|++.++... .+.++. + +..++.
T Consensus 157 ~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s--~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~ 234 (365)
T TIGR02928 157 SNGDLDNAKVGVIGISNDLKFRENLDPRVKS--SLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAA 234 (365)
T ss_pred cccCCCCCeEEEEEEECCcchHhhcCHHHhc--cCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHH
Confidence 11 12346788899998876 47777776 674 679999999999999999887521 122221 1 223444
Q ss_pred hCCCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHH
Q 003795 618 MTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIE 658 (795)
Q Consensus 618 ~t~G~sgadL~~lv~~A~~~A~~~~~~~It~edl~~Al~~~ 658 (795)
.+.|..+ .+.++++.|...|..++...|+.+|+..|+...
T Consensus 235 ~~~Gd~R-~al~~l~~a~~~a~~~~~~~it~~~v~~a~~~~ 274 (365)
T TIGR02928 235 QEHGDAR-KAIDLLRVAGEIAEREGAERVTEDHVEKAQEKI 274 (365)
T ss_pred HhcCCHH-HHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 5556544 445788889888888888899999999987743
No 87
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.38 E-value=6.4e-12 Score=150.06 Aligned_cols=210 Identities=18% Similarity=0.219 Sum_probs=142.5
Q ss_pred cCccccccCccCchHHHHHHHHHHHhccccccccccCcccCCceEEECCCCCchhHHHHHhhhhccccEE-E-eeccc--
Q 003795 411 RGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFF-S-ISASQ-- 486 (795)
Q Consensus 411 ~~~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el~~~~~-~-is~se-- 486 (795)
+.++..|+++.|....+..+.+++.. -+++..+||+||+||||||+|+++|+.+++... . ..|+.
T Consensus 9 KyRP~tFddIIGQe~Iv~~LknaI~~-----------~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~ 77 (944)
T PRK14949 9 KWRPATFEQMVGQSHVLHALTNALTQ-----------QRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCS 77 (944)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHh-----------CCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCch
Confidence 34678899999999888777766542 134566899999999999999999998865311 0 00000
Q ss_pred ------------eehhhh--ccchhhHHhHHHHHHh----cCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhh
Q 003795 487 ------------FVEIYV--GVGASRVRSLYQEAKD----NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCL 548 (795)
Q Consensus 487 ------------~~~~~~--g~~~~~l~~lf~~ar~----~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~l 548 (795)
+....- ..+...++.+.+.+.. ....|++|||+|.+... .++.||..|
T Consensus 78 sC~~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~e--------------AqNALLKtL 143 (944)
T PRK14949 78 SCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRS--------------SFNALLKTL 143 (944)
T ss_pred HHHHHhcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHH--------------HHHHHHHHH
Confidence 000000 0112335555555432 33469999999999654 889999999
Q ss_pred hcccCCCcEEEEeccCCCCCCCccccCCCcccceecCCCCCHHHHHHHHHHHHccCCCC-ChhhHHHHHhhCCCCcHHHH
Q 003795 549 DGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAEL 627 (795)
Q Consensus 549 d~~~~~~~VlVIatTN~~d~LdpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~~~~-~d~dl~~LA~~t~G~sgadL 627 (795)
+ ....++.+|++|+.+..|.+.|++ |+ .++.|.+++.++....++..+....+. .+..+..|+..+.| +.+++
T Consensus 144 E--EPP~~vrFILaTTe~~kLl~TIlS--RC-q~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~G-d~R~A 217 (944)
T PRK14949 144 E--EPPEHVKFLLATTDPQKLPVTVLS--RC-LQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANG-SMRDA 217 (944)
T ss_pred h--ccCCCeEEEEECCCchhchHHHHH--hh-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHH
Confidence 8 456677888778888889999998 65 478999999999999888877654332 33446778888765 45566
Q ss_pred HHHHHHHHHHHHHcCCCccCHHHHHHHH
Q 003795 628 ANIVEVAAINMMRDGRTEITTDDLLQAA 655 (795)
Q Consensus 628 ~~lv~~A~~~A~~~~~~~It~edl~~Al 655 (795)
.+++..+.. . +...++.+++...+
T Consensus 218 LnLLdQala--~--~~~~It~~~V~~ll 241 (944)
T PRK14949 218 LSLTDQAIA--F--GGGQVMLTQVQTML 241 (944)
T ss_pred HHHHHHHHH--h--cCCcccHHHHHHHh
Confidence 677776662 2 33457776665543
No 88
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.38 E-value=4.4e-12 Score=144.80 Aligned_cols=266 Identities=15% Similarity=0.142 Sum_probs=161.8
Q ss_pred ceEEECCCCCchhHHHHHhhhhc-----cccEEEeeccceehhhhccch-hhHHhHHHHHHhcCCceeEhHHHHHHhhhc
Q 003795 453 GILLCGPPGVGKTLLAKAVAGEA-----GVNFFSISASQFVEIYVGVGA-SRVRSLYQEAKDNAPSVVFIDELDAVGRER 526 (795)
Q Consensus 453 giLL~GPpGtGKTtLakaLA~el-----~~~~~~is~se~~~~~~g~~~-~~l~~lf~~ar~~~p~Il~IDEID~l~~~r 526 (795)
+++|+||+|+|||+|++++++++ +..++++++.++...+..... ..+..+.+. ....+++++|||++.+.+..
T Consensus 132 ~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~~~~~~f~~~-~~~~~dvLlIDDi~~l~~~~ 210 (440)
T PRK14088 132 PLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREK-YRKKVDVLLIDDVQFLIGKT 210 (440)
T ss_pred eEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhcccHHHHHHH-HHhcCCEEEEechhhhcCcH
Confidence 48999999999999999999975 346778888877665432211 112222222 22357899999999875431
Q ss_pred cCCCCCCcchHHHHHHHHHHhhhcccCCCcEEEEeccCCCCC---CCccccCCCcc--cceecCCCCCHHHHHHHHHHHH
Q 003795 527 GLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDI---LDPALVRPGRF--DRKIFIPKPGLIGRMEILKVHA 601 (795)
Q Consensus 527 ~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVIatTN~~d~---LdpaLlrpgRF--d~~I~~~~Pd~~eR~~Il~~~l 601 (795)
. ....|+..++.+...+..+||++++.|.. +.+.+.+ || +..+.+.+|+.+.|..|++..+
T Consensus 211 ~------------~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~S--R~~~gl~v~i~~pd~e~r~~IL~~~~ 276 (440)
T PRK14088 211 G------------VQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKKIARKML 276 (440)
T ss_pred H------------HHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhh--HHhcCceEeeCCCCHHHHHHHHHHHH
Confidence 1 22333333443334445666666666654 5567877 66 5678899999999999999887
Q ss_pred ccCCCC-ChhhHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHHhcccccccccchhhhHHHHHH
Q 003795 602 RKKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEERGMLDRKERSSETWRQVAINE 680 (795)
Q Consensus 602 ~~~~~~-~d~dl~~LA~~t~G~sgadL~~lv~~A~~~A~~~~~~~It~edl~~Al~~~~~~~~~~~~~~~~~~~~va~hE 680 (795)
....+. ++..+..||....| +.++|..+++.....+...+ ..||.+.+.+++...... ......+..++
T Consensus 277 ~~~~~~l~~ev~~~Ia~~~~~-~~R~L~g~l~~l~~~~~~~~-~~it~~~a~~~L~~~~~~--------~~~~~~i~~~~ 346 (440)
T PRK14088 277 EIEHGELPEEVLNFVAENVDD-NLRRLRGAIIKLLVYKETTG-EEVDLKEAILLLKDFIKP--------NRVKAMDPIDE 346 (440)
T ss_pred HhcCCCCCHHHHHHHHhcccc-CHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHhcc--------ccccCCCCHHH
Confidence 654332 33446777777764 77888888887766665555 459999888887633110 11112345666
Q ss_pred HHHHHHHHhcCCCCccceEEEecCCCccc----cceeecccchhhhhccccHHHHHHHHHHHhChHHHHHHHhCCCCccc
Q 003795 681 AAMAVVAVNFPDLKNIEFVTIAPRAGREL----GYVRMKMDHMKFKEGMLSRQSLLDHITVQLAPRAADELWCGEGQLST 756 (795)
Q Consensus 681 aGhalva~~l~~~~~i~~vtI~pr~g~~l----G~~~~~~~e~~~~~~~~tr~~ll~~I~vlLaGRaAEel~~G~~~vst 756 (795)
+-.+|+.++-- .+..+.-..| .... -..+|.-.+. .-. -+..|+..+| |-.-.|+.+...+..
T Consensus 347 I~~~V~~~~~i---~~~~l~s~~R-~~~i~~aR~iamyl~r~~----~~~----s~~~Ig~~fg-r~hstV~~a~~~i~~ 413 (440)
T PRK14088 347 LIEIVAKVTGV---SREEILSNSR-NVKALLARRIGMYVAKNY----LGS----SLRTIAEKFN-RSHPVVVDSVKKVKD 413 (440)
T ss_pred HHHHHHHHcCC---cHHHHhCCCC-CccccHHHHHHHHHHHHH----hCC----CHHHHHHHhC-CCHHHHHHHHHHHHH
Confidence 76777776521 1222222222 1111 1122322221 111 3677888886 877778777655554
No 89
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.37 E-value=7.3e-12 Score=142.91 Aligned_cols=268 Identities=16% Similarity=0.157 Sum_probs=154.7
Q ss_pred CceEEECCCCCchhHHHHHhhhhc---cccEEEeeccceehhhhccchhhHHhHHHHHHhcCCceeEhHHHHHHhhhccC
Q 003795 452 GGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGL 528 (795)
Q Consensus 452 ~giLL~GPpGtGKTtLakaLA~el---~~~~~~is~se~~~~~~g~~~~~l~~lf~~ar~~~p~Il~IDEID~l~~~r~~ 528 (795)
.+++|+||+|+|||+|++++++.+ +..+++++...+...+.......-...|.... ..+++++|||++.+.+..
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~-~~~dvLiIDDiq~l~~k~-- 218 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQFY-RNVDALFIEDIEVFSGKG-- 218 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHHHHHHHc-ccCCEEEEcchhhhcCCh--
Confidence 358999999999999999999875 57788888776655433221111112233322 346799999999875421
Q ss_pred CCCCCcchHHHHHHHHHHhhhcccCCCcEEEEeccCCCC---CCCccccCCCccc--ceecCCCCCHHHHHHHHHHHHcc
Q 003795 529 IKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPD---ILDPALVRPGRFD--RKIFIPKPGLIGRMEILKVHARK 603 (795)
Q Consensus 529 ~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVIatTN~~d---~LdpaLlrpgRFd--~~I~~~~Pd~~eR~~Il~~~l~~ 603 (795)
. ....|+..++.+...+..+|+.+++.|. .+++.|.+ ||. ..+.+++|+.++|..|++..+..
T Consensus 219 -------~---~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~S--R~~~Gl~~~l~~pd~e~r~~iL~~k~~~ 286 (445)
T PRK12422 219 -------A---TQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLIS--RFEWGIAIPLHPLTKEGLRSFLERKAEA 286 (445)
T ss_pred -------h---hHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHh--hhcCCeEEecCCCCHHHHHHHHHHHHHH
Confidence 1 2223333333222334456666655554 46788888 884 78999999999999999988876
Q ss_pred CCCC-ChhhHHHHHhhCCCCcHHHHHHHHHHHHHHH-HH-cCCCccCHHHHHHHHHHHHhcccccccccchhhhHHHHHH
Q 003795 604 KPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINM-MR-DGRTEITTDDLLQAAQIEERGMLDRKERSSETWRQVAINE 680 (795)
Q Consensus 604 ~~~~-~d~dl~~LA~~t~G~sgadL~~lv~~A~~~A-~~-~~~~~It~edl~~Al~~~~~~~~~~~~~~~~~~~~va~hE 680 (795)
..+. ++..+..++.... -+.++|.++++..+... .. -....||.+++.+++...... ..+..+.+..
T Consensus 287 ~~~~l~~evl~~la~~~~-~dir~L~g~l~~l~~~~a~~~~~~~~i~~~~~~~~l~~~~~~---------~~~~~~t~~~ 356 (445)
T PRK12422 287 LSIRIEETALDFLIEALS-SNVKSLLHALTLLAKRVAYKKLSHQLLYVDDIKALLHDVLEA---------AESVRLTPSK 356 (445)
T ss_pred cCCCCCHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhhc---------ccCCCCCHHH
Confidence 6543 3333555777665 35667777777664221 11 123458999988887632110 0111233445
Q ss_pred HHHHHHHHhcCCCCccceEEEecCCCccc----cceeecccchhhhhccccHHHHHHHHHHHhChHHHHHHHhCCCCccc
Q 003795 681 AAMAVVAVNFPDLKNIEFVTIAPRAGREL----GYVRMKMDHMKFKEGMLSRQSLLDHITVQLAPRAADELWCGEGQLST 756 (795)
Q Consensus 681 aGhalva~~l~~~~~i~~vtI~pr~g~~l----G~~~~~~~e~~~~~~~~tr~~ll~~I~vlLaGRaAEel~~G~~~vst 756 (795)
+-.+|+.++--. +..+.-..| .... -..+|.-.+. . ..-+..|.-.+| |-.-.|+++..++..
T Consensus 357 I~~~Va~~~~v~---~~dl~s~~R-~~~i~~~Rqiamyl~r~~----t----~~s~~~IG~~fg-rdHsTV~~a~~ki~~ 423 (445)
T PRK12422 357 IIRAVAQYYGVS---PESILGRSQ-SREYVLPRQVAMYLCRQK----L----SLSYVKIGDVFS-RDHSTVISSIRAISQ 423 (445)
T ss_pred HHHHHHHHhCCC---HHHHhcCCC-CcccccHHHHHHHHHHHh----c----CCCHHHHHHHhC-CChHHHHHHHHHHHH
Confidence 555666654221 111211112 1111 1223333221 1 112677777776 888888887755554
Q ss_pred c
Q 003795 757 I 757 (795)
Q Consensus 757 G 757 (795)
-
T Consensus 424 ~ 424 (445)
T PRK12422 424 K 424 (445)
T ss_pred H
Confidence 3
No 90
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.37 E-value=5.5e-12 Score=147.95 Aligned_cols=211 Identities=19% Similarity=0.261 Sum_probs=147.5
Q ss_pred cCccccccCccCchHHHHHHHHHHHhccccccccccCcccCCceEEECCCCCchhHHHHHhhhhccccEEE---------
Q 003795 411 RGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFS--------- 481 (795)
Q Consensus 411 ~~~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~--------- 481 (795)
+.++..|+++.|.+..+..+.+.+.. -+++.++||+||+|+||||+|+++|+.+++....
T Consensus 9 KYRP~tFddIIGQe~vv~~L~~ai~~-----------~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~ 77 (709)
T PRK08691 9 KWRPKTFADLVGQEHVVKALQNALDE-----------GRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQ 77 (709)
T ss_pred HhCCCCHHHHcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccH
Confidence 44678899999999998877776652 2456679999999999999999999987543110
Q ss_pred ----eeccceehh-----hhccchhhHHhHHHHHHh----cCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhh
Q 003795 482 ----ISASQFVEI-----YVGVGASRVRSLYQEAKD----NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCL 548 (795)
Q Consensus 482 ----is~se~~~~-----~~g~~~~~l~~lf~~ar~----~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~l 548 (795)
+..+.+.+. ....+...++.+++.+.. ....|++|||+|.+... .++.|+..|
T Consensus 78 sCr~i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~--------------A~NALLKtL 143 (709)
T PRK08691 78 SCTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKS--------------AFNAMLKTL 143 (709)
T ss_pred HHHHHhccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHH--------------HHHHHHHHH
Confidence 000111100 011122345666665432 23469999999877433 678899888
Q ss_pred hcccCCCcEEEEeccCCCCCCCccccCCCcccceecCCCCCHHHHHHHHHHHHccCCCC-ChhhHHHHHhhCCCCcHHHH
Q 003795 549 DGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAEL 627 (795)
Q Consensus 549 d~~~~~~~VlVIatTN~~d~LdpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~~~~-~d~dl~~LA~~t~G~sgadL 627 (795)
+ ....++.+|.+||.+..+.+.+++ |+ ..+.|.+++.++....+...+...++. ++..+..|++.+. .+.+++
T Consensus 144 E--EPp~~v~fILaTtd~~kL~~TIrS--RC-~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~-GslRdA 217 (709)
T PRK08691 144 E--EPPEHVKFILATTDPHKVPVTVLS--RC-LQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAA-GSMRDA 217 (709)
T ss_pred H--hCCCCcEEEEEeCCccccchHHHH--HH-hhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhC-CCHHHH
Confidence 8 345677888888889999999987 76 378888999999999998888765543 3344677887775 467777
Q ss_pred HHHHHHHHHHHHHcCCCccCHHHHHHHHH
Q 003795 628 ANIVEVAAINMMRDGRTEITTDDLLQAAQ 656 (795)
Q Consensus 628 ~~lv~~A~~~A~~~~~~~It~edl~~Al~ 656 (795)
.++++.+... +...|+.+++...+.
T Consensus 218 lnLLDqaia~----g~g~It~e~V~~lLG 242 (709)
T PRK08691 218 LSLLDQAIAL----GSGKVAENDVRQMIG 242 (709)
T ss_pred HHHHHHHHHh----cCCCcCHHHHHHHHc
Confidence 7888776642 345688888887754
No 91
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.37 E-value=9.3e-12 Score=145.95 Aligned_cols=204 Identities=25% Similarity=0.337 Sum_probs=146.8
Q ss_pred CccccccCccCchHHHHHHHHHHHhccccccccccCcccCCceEEECCCCCchhHHHHHhhhhccc--------------
Q 003795 412 GVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGV-------------- 477 (795)
Q Consensus 412 ~~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el~~-------------- 477 (795)
.++..|+++.|.+..+..+.+.+.. .+++..+||+||+|+|||++|+.+|..+.+
T Consensus 10 ~rP~~f~~viGq~~v~~~L~~~i~~-----------~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~ 78 (559)
T PRK05563 10 WRPQTFEDVVGQEHITKTLKNAIKQ-----------GKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEI 78 (559)
T ss_pred hCCCcHHhccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHH
Confidence 4678899999999888877777653 134556899999999999999999997643
Q ss_pred ----------cEEEeeccceehhhhccchhhHHhHHHHHHhc----CCceeEhHHHHHHhhhccCCCCCCcchHHHHHHH
Q 003795 478 ----------NFFSISASQFVEIYVGVGASRVRSLYQEAKDN----APSVVFIDELDAVGRERGLIKGSGGQERDATLNQ 543 (795)
Q Consensus 478 ----------~~~~is~se~~~~~~g~~~~~l~~lf~~ar~~----~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~ 543 (795)
+++.++.+. +.+...++.+.+.+... .+.|++|||+|.+... .++.
T Consensus 79 C~~i~~g~~~dv~eidaas------~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~--------------a~na 138 (559)
T PRK05563 79 CKAITNGSLMDVIEIDAAS------NNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTG--------------AFNA 138 (559)
T ss_pred HHHHhcCCCCCeEEeeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHH--------------HHHH
Confidence 222332211 12234456676665532 3469999999988543 7889
Q ss_pred HHHhhhcccCCCcEEEEeccCCCCCCCccccCCCcccceecCCCCCHHHHHHHHHHHHccCCCC-ChhhHHHHHhhCCCC
Q 003795 544 LLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGM 622 (795)
Q Consensus 544 LL~~ld~~~~~~~VlVIatTN~~d~LdpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~~~~-~d~dl~~LA~~t~G~ 622 (795)
|+..++ ....++++|.+|+.++.+++.+++ |+. .+.|.+|+..+....++..+...++. ++..+..++..+.|
T Consensus 139 LLKtLE--epp~~~ifIlatt~~~ki~~tI~S--Rc~-~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~G- 212 (559)
T PRK05563 139 LLKTLE--EPPAHVIFILATTEPHKIPATILS--RCQ-RFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEG- 212 (559)
T ss_pred HHHHhc--CCCCCeEEEEEeCChhhCcHHHHh--Hhe-EEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 998888 455677888778888999999988 665 68899999999999998888765543 33446677887765
Q ss_pred cHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Q 003795 623 VGAELANIVEVAAINMMRDGRTEITTDDLLQAAQ 656 (795)
Q Consensus 623 sgadL~~lv~~A~~~A~~~~~~~It~edl~~Al~ 656 (795)
+.+++.+++..+... +...||.+++..++.
T Consensus 213 ~~R~al~~Ldq~~~~----~~~~It~~~V~~vlg 242 (559)
T PRK05563 213 GMRDALSILDQAISF----GDGKVTYEDALEVTG 242 (559)
T ss_pred CHHHHHHHHHHHHHh----ccCCCCHHHHHHHhC
Confidence 667777777766533 244688888776644
No 92
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.37 E-value=7.5e-12 Score=145.59 Aligned_cols=186 Identities=16% Similarity=0.212 Sum_probs=124.7
Q ss_pred eEEECCCCCchhHHHHHhhhhc-----cccEEEeeccceehhhhccchhhHHhHHHHHHhcCCceeEhHHHHHHhhhccC
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEA-----GVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGL 528 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el-----~~~~~~is~se~~~~~~g~~~~~l~~lf~~ar~~~p~Il~IDEID~l~~~r~~ 528 (795)
++|+|++|+|||+|+++|++.+ +..+.++++.+|.+.+...........|... ...+++|+||||+.+....
T Consensus 317 L~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~-y~~~DLLlIDDIq~l~gke-- 393 (617)
T PRK14086 317 LFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRR-YREMDILLVDDIQFLEDKE-- 393 (617)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHH-hhcCCEEEEehhccccCCH--
Confidence 8999999999999999999976 4577889988887665433222222223322 2346899999999885431
Q ss_pred CCCCCcchHHHHHHHHHHhhhcccCCCcEEEEeccCCC---CCCCccccCCCcc--cceecCCCCCHHHHHHHHHHHHcc
Q 003795 529 IKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRP---DILDPALVRPGRF--DRKIFIPKPGLIGRMEILKVHARK 603 (795)
Q Consensus 529 ~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVIatTN~~---d~LdpaLlrpgRF--d~~I~~~~Pd~~eR~~Il~~~l~~ 603 (795)
. ....|+..++.+...+.-+||.+...+ ..+++.|.+ || ..++.+..|+.+.|..||+.++..
T Consensus 394 -------~---tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~S--Rf~~GLvv~I~~PD~EtR~aIL~kka~~ 461 (617)
T PRK14086 394 -------S---TQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRN--RFEWGLITDVQPPELETRIAILRKKAVQ 461 (617)
T ss_pred -------H---HHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHh--hhhcCceEEcCCCCHHHHHHHHHHHHHh
Confidence 1 122333333333333344555444333 357888988 66 667799999999999999988877
Q ss_pred CCCC-ChhhHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Q 003795 604 KPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQ 656 (795)
Q Consensus 604 ~~~~-~d~dl~~LA~~t~G~sgadL~~lv~~A~~~A~~~~~~~It~edl~~Al~ 656 (795)
..+. ++.-+..|+.+.. -+.++|..+++.....+...+ ..||.+.+.+++.
T Consensus 462 r~l~l~~eVi~yLa~r~~-rnvR~LegaL~rL~a~a~~~~-~~itl~la~~vL~ 513 (617)
T PRK14086 462 EQLNAPPEVLEFIASRIS-RNIRELEGALIRVTAFASLNR-QPVDLGLTEIVLR 513 (617)
T ss_pred cCCCCCHHHHHHHHHhcc-CCHHHHHHHHHHHHHHHHhhC-CCCCHHHHHHHHH
Confidence 6554 3333666777665 467888888887765555444 4588888877765
No 93
>PRK06893 DNA replication initiation factor; Validated
Probab=99.36 E-value=1.1e-11 Score=129.78 Aligned_cols=179 Identities=15% Similarity=0.161 Sum_probs=114.8
Q ss_pred ceEEECCCCCchhHHHHHhhhhc---cccEEEeeccceehhhhccchhhHHhHHHHHHhcCCceeEhHHHHHHhhhccCC
Q 003795 453 GILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLI 529 (795)
Q Consensus 453 giLL~GPpGtGKTtLakaLA~el---~~~~~~is~se~~~~~~g~~~~~l~~lf~~ar~~~p~Il~IDEID~l~~~r~~~ 529 (795)
.++|+||||||||+|++++|+++ +....+++....... ...+++... .+++++|||++.+.+..
T Consensus 41 ~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~~~--------~~~~~~~~~--~~dlLilDDi~~~~~~~--- 107 (229)
T PRK06893 41 FFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQYF--------SPAVLENLE--QQDLVCLDDLQAVIGNE--- 107 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhhhh--------hHHHHhhcc--cCCEEEEeChhhhcCCh---
Confidence 47999999999999999999875 344455554321110 112233322 45799999999875331
Q ss_pred CCCCcchHHHHHHHHHHhhhcccCCCc-EEEEeccCCCCCCC---ccccCCCcccceecCCCCCHHHHHHHHHHHHccCC
Q 003795 530 KGSGGQERDATLNQLLVCLDGFEGRGN-VITIASTNRPDILD---PALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKP 605 (795)
Q Consensus 530 ~~Sgge~~r~~l~~LL~~ld~~~~~~~-VlVIatTN~~d~Ld---paLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~~ 605 (795)
..... |+..++.....++ ++|+++++.|..++ |.|.++.+++..+.+++|+.++|..|++..+....
T Consensus 108 ------~~~~~---l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~ 178 (229)
T PRK06893 108 ------EWELA---IFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRG 178 (229)
T ss_pred ------HHHHH---HHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcC
Confidence 11222 3333333333333 45556666676554 88888666678999999999999999998776544
Q ss_pred CC-ChhhHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHH
Q 003795 606 MA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAA 655 (795)
Q Consensus 606 ~~-~d~dl~~LA~~t~G~sgadL~~lv~~A~~~A~~~~~~~It~edl~~Al 655 (795)
+. ++.-+..|+.+..| +.+.+.++++.....+...+ ..||...+.+++
T Consensus 179 l~l~~~v~~~L~~~~~~-d~r~l~~~l~~l~~~~~~~~-~~it~~~v~~~L 227 (229)
T PRK06893 179 IELSDEVANFLLKRLDR-DMHTLFDALDLLDKASLQAQ-RKLTIPFVKEIL 227 (229)
T ss_pred CCCCHHHHHHHHHhccC-CHHHHHHHHHHHHHHHHhcC-CCCCHHHHHHHh
Confidence 33 34446778887764 56666677775543333334 369998888775
No 94
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.35 E-value=1.8e-11 Score=138.26 Aligned_cols=218 Identities=24% Similarity=0.287 Sum_probs=129.0
Q ss_pred ccCchHHHHHHHHHHHh-cccccc-ccc-cCcccC-CceEEECCCCCchhHHHHHhhhhccccEEEeeccceeh-hhhcc
Q 003795 420 VAGLGKIRLELEEIVKF-FTHGEM-YRR-RGVRIP-GGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVE-IYVGV 494 (795)
Q Consensus 420 ~~gl~~~~~~l~~lv~~-~~~~~~-~~~-~gl~i~-~giLL~GPpGtGKTtLakaLA~el~~~~~~is~se~~~-~~~g~ 494 (795)
+.|.+.++..+..++.. +..... ... -+..++ .++||+||||||||++|++||..++.+|+.++++.+.. .|+|.
T Consensus 73 ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG~ 152 (412)
T PRK05342 73 VIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVGE 152 (412)
T ss_pred eeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcccc
Confidence 56777777666544321 110000 000 022233 45999999999999999999999999999999988764 47776
Q ss_pred chhhH-HhHHHH----HHhcCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhccc-----------CCCcEE
Q 003795 495 GASRV-RSLYQE----AKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE-----------GRGNVI 558 (795)
Q Consensus 495 ~~~~l-~~lf~~----ar~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~-----------~~~~Vl 558 (795)
....+ ..+++. .....++|+||||||.+.......+...+-....+++.||..|++.. ...+++
T Consensus 153 d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~~~~~~~ 232 (412)
T PRK05342 153 DVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQEFI 232 (412)
T ss_pred hHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCcCCCCeE
Confidence 55443 333332 22346789999999999765221111111111236777777777521 112345
Q ss_pred EEeccCCCC----------------------------------------------------CCCccccCCCcccceecCC
Q 003795 559 TIASTNRPD----------------------------------------------------ILDPALVRPGRFDRKIFIP 586 (795)
Q Consensus 559 VIatTN~~d----------------------------------------------------~LdpaLlrpgRFd~~I~~~ 586 (795)
+|.|+|... .+.|+|+. |+|.++.|.
T Consensus 233 ~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEflg--Rld~iv~f~ 310 (412)
T PRK05342 233 QVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFIG--RLPVVATLE 310 (412)
T ss_pred EeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHhC--CCCeeeecC
Confidence 555555410 03566655 999999999
Q ss_pred CCCHHHHHHHHHH----HHc-------cCCCC---ChhhHHHHHhh--CCCCcHHHHHHHHHHHHHHHH
Q 003795 587 KPGLIGRMEILKV----HAR-------KKPMA---DDVDYLAVASM--TDGMVGAELANIVEVAAINMM 639 (795)
Q Consensus 587 ~Pd~~eR~~Il~~----~l~-------~~~~~---~d~dl~~LA~~--t~G~sgadL~~lv~~A~~~A~ 639 (795)
+.+.++...|+.. .++ ...+. ++.-+..|++. ..++-.+.|..+++....-.+
T Consensus 311 ~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~~~~GAR~Lrriie~~l~~~~ 379 (412)
T PRK05342 311 ELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKAIERKTGARGLRSILEEILLDVM 379 (412)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhCCCCCCCCchHHHHHHHHhHHHH
Confidence 9999999999973 221 11111 22224455553 344555667666665554433
No 95
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.34 E-value=1.2e-11 Score=143.93 Aligned_cols=210 Identities=19% Similarity=0.240 Sum_probs=143.1
Q ss_pred CccccccCccCchHHHHHHHHHHHhccccccccccCcccCCceEEECCCCCchhHHHHHhhhhccccEEE--eeccc---
Q 003795 412 GVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFS--ISASQ--- 486 (795)
Q Consensus 412 ~~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~--is~se--- 486 (795)
..+..|+++.|.+..+..+.+.+.. -+++..++|+||+|+||||+|+++|..+.+.... -.|+.
T Consensus 10 ~rP~~f~divGq~~v~~~L~~~i~~-----------~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~ 78 (527)
T PRK14969 10 WRPKSFSELVGQEHVVRALTNALEQ-----------QRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSA 78 (527)
T ss_pred hCCCcHHHhcCcHHHHHHHHHHHHc-----------CCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence 3567899999999888777766652 2345568999999999999999999987542110 00100
Q ss_pred --------eehhh-h----ccchhhHHhHHHHHHhc----CCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhh
Q 003795 487 --------FVEIY-V----GVGASRVRSLYQEAKDN----APSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLD 549 (795)
Q Consensus 487 --------~~~~~-~----g~~~~~l~~lf~~ar~~----~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld 549 (795)
+.+.+ + ......++.+.+.+... ...|++|||+|.+... .++.|+..++
T Consensus 79 C~~i~~~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~--------------a~naLLK~LE 144 (527)
T PRK14969 79 CLEIDSGRFVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKS--------------AFNAMLKTLE 144 (527)
T ss_pred HHHHhcCCCCceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHH--------------HHHHHHHHHh
Confidence 00000 0 11223456666665432 2459999999887543 6888999998
Q ss_pred cccCCCcEEEEeccCCCCCCCccccCCCcccceecCCCCCHHHHHHHHHHHHccCCCC-ChhhHHHHHhhCCCCcHHHHH
Q 003795 550 GFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAELA 628 (795)
Q Consensus 550 ~~~~~~~VlVIatTN~~d~LdpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~~~~-~d~dl~~LA~~t~G~sgadL~ 628 (795)
....++++|.+|+.+..+.+.+++ |+ ..+.|.+++.++....+...+....+. ++..+..++..+.| +.+++.
T Consensus 145 --epp~~~~fIL~t~d~~kil~tI~S--Rc-~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~G-slr~al 218 (527)
T PRK14969 145 --EPPEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAG-SMRDAL 218 (527)
T ss_pred --CCCCCEEEEEEeCChhhCchhHHH--HH-HHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHH
Confidence 455677888888888888888888 65 489999999999988888777654433 33346667777654 566777
Q ss_pred HHHHHHHHHHHHcCCCccCHHHHHHHHH
Q 003795 629 NIVEVAAINMMRDGRTEITTDDLLQAAQ 656 (795)
Q Consensus 629 ~lv~~A~~~A~~~~~~~It~edl~~Al~ 656 (795)
+++..+... +...|+.+++...+.
T Consensus 219 ~lldqai~~----~~~~I~~~~v~~~~~ 242 (527)
T PRK14969 219 SLLDQAIAY----GGGTVNESEVRAMLG 242 (527)
T ss_pred HHHHHHHHh----cCCCcCHHHHHHHHC
Confidence 887776532 455688888777653
No 96
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.34 E-value=1.2e-10 Score=138.02 Aligned_cols=216 Identities=25% Similarity=0.300 Sum_probs=130.8
Q ss_pred ccccccCccCchHHHHHHHHHHHhccccccccccCcccCCceEEECCCCCchhHHHHHhhhhc----------cccEEEe
Q 003795 413 VDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEA----------GVNFFSI 482 (795)
Q Consensus 413 ~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el----------~~~~~~i 482 (795)
.+..|+++.|....+..+...+. . ..+..++|+|||||||||+|+++.+.. +.+++.+
T Consensus 149 rp~~~~~iiGqs~~~~~l~~~ia---~---------~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i 216 (615)
T TIGR02903 149 RPRAFSEIVGQERAIKALLAKVA---S---------PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEV 216 (615)
T ss_pred CcCcHHhceeCcHHHHHHHHHHh---c---------CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEE
Confidence 45678888887777665433221 1 123459999999999999999998755 3467888
Q ss_pred eccceeh-------hhhccchhhH----HhHHH----------HHHhcCCceeEhHHHHHHhhhccCCCCCCcchHHHHH
Q 003795 483 SASQFVE-------IYVGVGASRV----RSLYQ----------EAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATL 541 (795)
Q Consensus 483 s~se~~~-------~~~g~~~~~l----~~lf~----------~ar~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l 541 (795)
++..+.. ..++...... ...+. .......+++||||++.+... ..
T Consensus 217 ~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~--------------~Q 282 (615)
T TIGR02903 217 DGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPL--------------LQ 282 (615)
T ss_pred echhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHH--------------HH
Confidence 8765420 1112111000 00000 011223569999999877443 33
Q ss_pred HHHHHhhhcc--------------------------cCCCcEEEE-eccCCCCCCCccccCCCcccceecCCCCCHHHHH
Q 003795 542 NQLLVCLDGF--------------------------EGRGNVITI-ASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRM 594 (795)
Q Consensus 542 ~~LL~~ld~~--------------------------~~~~~VlVI-atTN~~d~LdpaLlrpgRFd~~I~~~~Pd~~eR~ 594 (795)
..|+..++.. ....++++| +||+.++.++++|++ ||. .+.|++++.++..
T Consensus 283 ~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrS--R~~-~i~~~pls~edi~ 359 (615)
T TIGR02903 283 NKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRS--RCA-EVFFEPLTPEDIA 359 (615)
T ss_pred HHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHh--cee-EEEeCCCCHHHHH
Confidence 4444444321 012345666 456778889999988 887 6789999999999
Q ss_pred HHHHHHHccCCCC-ChhhHHHHHhhCCCCcHHHHHHHHHHHHHHHHHc--------CCCccCHHHHHHHHHHHH
Q 003795 595 EILKVHARKKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMRD--------GRTEITTDDLLQAAQIEE 659 (795)
Q Consensus 595 ~Il~~~l~~~~~~-~d~dl~~LA~~t~G~sgadL~~lv~~A~~~A~~~--------~~~~It~edl~~Al~~~~ 659 (795)
.|++..+...... ++.-+..|+..+. .++...+++..+...+..+ +...|+.+|+.+++...+
T Consensus 360 ~Il~~~a~~~~v~ls~eal~~L~~ys~--~gRraln~L~~~~~~~~~~~~~~~~~~~~~~I~~edv~~~l~~~r 431 (615)
T TIGR02903 360 LIVLNAAEKINVHLAAGVEELIARYTI--EGRKAVNILADVYGYALYRAAEAGKENDKVTITQDDVYEVIQISR 431 (615)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHCCC--cHHHHHHHHHHHHHHHHHHHHHhccCCCCeeECHHHHHHHhCCCc
Confidence 9999988765432 2333555666553 4455445555554333211 233699999999987543
No 97
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.34 E-value=1.2e-11 Score=151.27 Aligned_cols=218 Identities=23% Similarity=0.329 Sum_probs=145.4
Q ss_pred ccccccCccCchHHHHHHHHHHHhccccccccccCcccCCceEEECCCCCchhHHHHHhhhhc----------cccEEEe
Q 003795 413 VDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEA----------GVNFFSI 482 (795)
Q Consensus 413 ~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el----------~~~~~~i 482 (795)
.+-.++.+.|-++. ++.++..+... -..+++|+||||||||++++.||..+ +..++.+
T Consensus 182 r~~~ld~~iGr~~e---i~~~i~~l~r~---------~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l 249 (852)
T TIGR03345 182 REGKIDPVLGRDDE---IRQMIDILLRR---------RQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSL 249 (852)
T ss_pred cCCCCCcccCCHHH---HHHHHHHHhcC---------CcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEe
Confidence 34556677776664 34444433211 12358999999999999999999865 2456777
Q ss_pred eccceeh--hhhccchhhHHhHHHHHHh-cCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcccCCCcEEE
Q 003795 483 SASQFVE--IYVGVGASRVRSLYQEAKD-NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVIT 559 (795)
Q Consensus 483 s~se~~~--~~~g~~~~~l~~lf~~ar~-~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlV 559 (795)
+++.+.. .|.|+....++.+++.+.. ..++|+||||++.+.+.++. +++.. .-+.|...+ .++.+.+
T Consensus 250 ~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~---~~~~d---~~n~Lkp~l----~~G~l~~ 319 (852)
T TIGR03345 250 DLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQ---AGQGD---AANLLKPAL----ARGELRT 319 (852)
T ss_pred ehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCc---ccccc---HHHHhhHHh----hCCCeEE
Confidence 7776653 4778888889999998865 45789999999999765321 11111 223333333 4678999
Q ss_pred EeccCCCC-----CCCccccCCCcccceecCCCCCHHHHHHHHHHHHccCC-----CCChhhHHHHHhhCCCCc-----H
Q 003795 560 IASTNRPD-----ILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKP-----MADDVDYLAVASMTDGMV-----G 624 (795)
Q Consensus 560 IatTN~~d-----~LdpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~~-----~~~d~dl~~LA~~t~G~s-----g 624 (795)
|+||+..+ .+||+|.| ||. .|.|+.|+.+++..||+.+..... ...+..+..++..+.+|. +
T Consensus 320 IgaTT~~e~~~~~~~d~AL~r--Rf~-~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~~r~LP 396 (852)
T TIGR03345 320 IAATTWAEYKKYFEKDPALTR--RFQ-VVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIPGRQLP 396 (852)
T ss_pred EEecCHHHHhhhhhccHHHHH--hCe-EEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccccccccCc
Confidence 99988643 48999999 996 899999999999999875554321 123445667777776653 4
Q ss_pred HHHHHHHHHHHHHHHHc-CCCccCHHHHHHHH
Q 003795 625 AELANIVEVAAINMMRD-GRTEITTDDLLQAA 655 (795)
Q Consensus 625 adL~~lv~~A~~~A~~~-~~~~It~edl~~Al 655 (795)
.....++++|+...... ....+..+++...+
T Consensus 397 DKAIdlldea~a~~~~~~~~~p~~~~~~~~~~ 428 (852)
T TIGR03345 397 DKAVSLLDTACARVALSQNATPAALEDLRRRI 428 (852)
T ss_pred cHHHHHHHHHHHHHHHhccCCchhHHHHHHHH
Confidence 55568888887655433 33344455554443
No 98
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.34 E-value=7.5e-12 Score=140.31 Aligned_cols=241 Identities=17% Similarity=0.186 Sum_probs=169.4
Q ss_pred hhhhhhhccccceeeeechhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchhhhhhhhhcCchHHHh
Q 003795 308 KDSTVATGLGIVFFVIFYRTVVLNYRRQKKDYEDRLKIEKAEREERKKLRQLERELEGLEGADDEIEQGEAEQNPHLKMA 387 (795)
Q Consensus 308 ~~~~~i~~l~~~~~l~~Ykgny~~y~~~~e~~e~~~~~ek~~e~~~~ei~~Lekele~~~~~~~~~~~~~~~~~~~~k~~ 387 (795)
.-++.|.++ ...++..|.|||+.|...+. +.+..+.++++.+++++..++..+....... ....+++
T Consensus 284 ~vCT~Ii~l-~~kkl~~y~Gnydqy~~tr~--E~~~~q~K~~~kqqk~i~~~K~~ia~~g~g~----------a~~~rka 350 (614)
T KOG0927|consen 284 GVCTNIIHL-DNKKLIYYEGNYDQYVKTRS--ELEENQMKAYEKQQKQIAHMKDLIARFGHGS----------AKLGRKA 350 (614)
T ss_pred hHhhhhhee-cccceeeecCCHHHHhhHHH--HHhHHHHHHHHHHHhHHHHhhHHHHhhcccc----------hhhhHHH
Confidence 347788888 78889999999999999888 7888888999999999999999887654221 1122333
Q ss_pred hchhhhHHHHHHHhcCCCCcccccCccccccCccCchHHHHHHHHHHHhccc-cccccccCcccCC--ceEEECCCCCch
Q 003795 388 MQFMKSGARVRRAYGKGLPQYLERGVDVKFSDVAGLGKIRLELEEIVKFFTH-GEMYRRRGVRIPG--GILLCGPPGVGK 464 (795)
Q Consensus 388 v~~~~~~~~vsr~tgipv~~~~~~~~~~~f~~~~gl~~~~~~l~~lv~~~~~-~~~~~~~gl~i~~--giLL~GPpGtGK 464 (795)
.+.++....+.. .|.-.....++...++|.++..++..++...++...|.+ +-+|.++++-+.. -+.++||||+||
T Consensus 351 ~s~~K~~~km~~-~gL~ek~~~~k~l~~~f~~vg~~p~pvi~~~nv~F~y~~~~~iy~~l~fgid~~srvAlVGPNG~GK 429 (614)
T KOG0927|consen 351 QSKEKTLDKMEA-DGLTEKVVGEKVLSFRFPEVGKIPPPVIMVQNVSFGYSDNPMIYKKLNFGIDLDSRVALVGPNGAGK 429 (614)
T ss_pred hhhhhhHHHHhh-ccccccccCCceEEEEcccccCCCCCeEEEeccccCCCCcchhhhhhhcccCcccceeEecCCCCch
Confidence 333333333321 122233344556788899988888888888888887753 3577776655544 399999999999
Q ss_pred hHHHHHhhhhccccEEEeeccceehh-hhccchhhH----HhHHHHHHhcCCceeEhHHHHHHhhhccCCCC--------
Q 003795 465 TLLAKAVAGEAGVNFFSISASQFVEI-YVGVGASRV----RSLYQEAKDNAPSVVFIDELDAVGRERGLIKG-------- 531 (795)
Q Consensus 465 TtLakaLA~el~~~~~~is~se~~~~-~~g~~~~~l----~~lf~~ar~~~p~Il~IDEID~l~~~r~~~~~-------- 531 (795)
|||+|.+.+.+.+..+.++....... ++.+..... ....+......|..-=++++..+.+..++.+.
T Consensus 430 sTLlKl~~gdl~p~~G~vs~~~H~~~~~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~ 509 (614)
T KOG0927|consen 430 STLLKLITGDLQPTIGMVSRHSHNKLPRYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPMSQ 509 (614)
T ss_pred hhhHHHHhhccccccccccccccccchhhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccchhh
Confidence 99999999999998888876653322 222221111 12333334334445567888888887776544
Q ss_pred -CCcchHHHHHHHHHHhhhcccCCCcEEEE-eccCCCCC
Q 003795 532 -SGGQERDATLNQLLVCLDGFEGRGNVITI-ASTNRPDI 568 (795)
Q Consensus 532 -Sgge~~r~~l~~LL~~ld~~~~~~~VlVI-atTN~~d~ 568 (795)
|+|++.+..|+.++ ...++++++ .+||+.|.
T Consensus 510 LS~Gqr~rVlFa~l~------~kqP~lLlLDEPtnhLDi 542 (614)
T KOG0927|consen 510 LSDGQRRRVLFARLA------VKQPHLLLLDEPTNHLDI 542 (614)
T ss_pred cccccchhHHHHHHH------hcCCcEEEecCCCcCCCc
Confidence 89999999999998 667788888 99999874
No 99
>PLN03025 replication factor C subunit; Provisional
Probab=99.34 E-value=2.4e-11 Score=133.41 Aligned_cols=203 Identities=17% Similarity=0.163 Sum_probs=131.7
Q ss_pred cccCccccccCccCchHHHHHHHHHHHhccccccccccCcccCCceEEECCCCCchhHHHHHhhhhcc-----ccEEEee
Q 003795 409 LERGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAG-----VNFFSIS 483 (795)
Q Consensus 409 ~~~~~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el~-----~~~~~is 483 (795)
.++..+..|+++.|.++.+..+..++..- .. .+++|+|||||||||+++++|+++. ..++.++
T Consensus 4 ~~kyrP~~l~~~~g~~~~~~~L~~~~~~~-----------~~-~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln 71 (319)
T PLN03025 4 VEKYRPTKLDDIVGNEDAVSRLQVIARDG-----------NM-PNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELN 71 (319)
T ss_pred hhhcCCCCHHHhcCcHHHHHHHHHHHhcC-----------CC-ceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeec
Confidence 45567788999999888877776654421 12 2489999999999999999999872 2344455
Q ss_pred ccceehhhhccchhhHHhHHHHHH-------hcCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcccCCCc
Q 003795 484 ASQFVEIYVGVGASRVRSLYQEAK-------DNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGN 556 (795)
Q Consensus 484 ~se~~~~~~g~~~~~l~~lf~~ar-------~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~ 556 (795)
.++... ...++....... ...+.+++|||+|.+... ..+.|+..++.. ..+
T Consensus 72 ~sd~~~------~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~~--------------aq~aL~~~lE~~--~~~ 129 (319)
T PLN03025 72 ASDDRG------IDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSG--------------AQQALRRTMEIY--SNT 129 (319)
T ss_pred cccccc------HHHHHHHHHHHHhccccCCCCCeEEEEEechhhcCHH--------------HHHHHHHHHhcc--cCC
Confidence 443211 112232222211 123569999999998643 456666666632 234
Q ss_pred EEEEeccCCCCCCCccccCCCcccceecCCCCCHHHHHHHHHHHHccCCCC-ChhhHHHHHhhCCCCcHHHHHHHHHHHH
Q 003795 557 VITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAELANIVEVAA 635 (795)
Q Consensus 557 VlVIatTN~~d~LdpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~~~~-~d~dl~~LA~~t~G~sgadL~~lv~~A~ 635 (795)
+.+|.+||....+.++|++ |+ ..+.|++|+.++....++..++..++. ++..+..++..+.| ..+.+.+.++.
T Consensus 130 t~~il~~n~~~~i~~~L~S--Rc-~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~g-DlR~aln~Lq~-- 203 (319)
T PLN03025 130 TRFALACNTSSKIIEPIQS--RC-AIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADG-DMRQALNNLQA-- 203 (319)
T ss_pred ceEEEEeCCccccchhHHH--hh-hcccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHH--
Confidence 5567778888888899988 65 389999999999999998877654432 34457777777764 23333344431
Q ss_pred HHHHHcCCCccCHHHHHHH
Q 003795 636 INMMRDGRTEITTDDLLQA 654 (795)
Q Consensus 636 ~~A~~~~~~~It~edl~~A 654 (795)
.+ .+...|+.+++...
T Consensus 204 -~~--~~~~~i~~~~v~~~ 219 (319)
T PLN03025 204 -TH--SGFGFVNQENVFKV 219 (319)
T ss_pred -HH--hcCCCCCHHHHHHH
Confidence 11 23456888888764
No 100
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.34 E-value=2e-11 Score=135.33 Aligned_cols=206 Identities=24% Similarity=0.321 Sum_probs=142.6
Q ss_pred ccCccccccCccCchHHHHHHHHHHHhccccccccccCcccCCceEEECCCCCchhHHHHHhhhhcccc-----------
Q 003795 410 ERGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVN----------- 478 (795)
Q Consensus 410 ~~~~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el~~~----------- 478 (795)
++..+..|+++.|.+..+..+...+.. -.++..++|+||+|+|||+++++++..+...
T Consensus 6 ~~~rp~~~~~iig~~~~~~~l~~~~~~-----------~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c 74 (355)
T TIGR02397 6 RKYRPQTFEDVIGQEHIVQTLKNAIKN-----------GRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNEC 74 (355)
T ss_pred HHhCCCcHhhccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCC
Confidence 344667888999999888777765542 1345568999999999999999999876432
Q ss_pred -------------EEEeeccceehhhhccchhhHHhHHHHHHhc----CCceeEhHHHHHHhhhccCCCCCCcchHHHHH
Q 003795 479 -------------FFSISASQFVEIYVGVGASRVRSLYQEAKDN----APSVVFIDELDAVGRERGLIKGSGGQERDATL 541 (795)
Q Consensus 479 -------------~~~is~se~~~~~~g~~~~~l~~lf~~ar~~----~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l 541 (795)
++.++.+. ......++.+++.+... ...+++|||+|.+... .+
T Consensus 75 ~~c~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~~--------------~~ 134 (355)
T TIGR02397 75 ESCKEINSGSSLDVIEIDAAS------NNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSKS--------------AF 134 (355)
T ss_pred HHHHHHhcCCCCCEEEeeccc------cCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCHH--------------HH
Confidence 22222211 11223456676665433 2358999999887543 67
Q ss_pred HHHHHhhhcccCCCcEEEEeccCCCCCCCccccCCCcccceecCCCCCHHHHHHHHHHHHccCCCC-ChhhHHHHHhhCC
Q 003795 542 NQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTD 620 (795)
Q Consensus 542 ~~LL~~ld~~~~~~~VlVIatTN~~d~LdpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~~~~-~d~dl~~LA~~t~ 620 (795)
+.|+..++. ...++++|.+||.++.+.+++.+ |+. .+.|++|+..+...++..+++..... ++..+..++..+.
T Consensus 135 ~~Ll~~le~--~~~~~~lIl~~~~~~~l~~~l~s--r~~-~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~ 209 (355)
T TIGR02397 135 NALLKTLEE--PPEHVVFILATTEPHKIPATILS--RCQ-RFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAAD 209 (355)
T ss_pred HHHHHHHhC--CccceeEEEEeCCHHHHHHHHHh--hee-EEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 788888873 44567777778888888899988 764 78999999999999999888766543 3344666777775
Q ss_pred CCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Q 003795 621 GMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQ 656 (795)
Q Consensus 621 G~sgadL~~lv~~A~~~A~~~~~~~It~edl~~Al~ 656 (795)
| +.+.+.+.++.+... +...||.+++.+++.
T Consensus 210 g-~~~~a~~~lekl~~~----~~~~it~~~v~~~~~ 240 (355)
T TIGR02397 210 G-SLRDALSLLDQLISF----GNGNITYEDVNELLG 240 (355)
T ss_pred C-ChHHHHHHHHHHHhh----cCCCCCHHHHHHHhC
Confidence 5 566666666655533 224599999887754
No 101
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.33 E-value=2.1e-11 Score=140.97 Aligned_cols=204 Identities=22% Similarity=0.291 Sum_probs=141.2
Q ss_pred cCccccccCccCchHHHHHHHHHHHhccccccccccCcccCCceEEECCCCCchhHHHHHhhhhcccc------------
Q 003795 411 RGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVN------------ 478 (795)
Q Consensus 411 ~~~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el~~~------------ 478 (795)
+..+..|+++.|.+.++..+..++.. -+++..+||+|||||||||+++++|..+...
T Consensus 7 KyRP~~~~dvvGq~~v~~~L~~~i~~-----------~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~s 75 (504)
T PRK14963 7 RARPITFDEVVGQEHVKEVLLAALRQ-----------GRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECES 75 (504)
T ss_pred hhCCCCHHHhcChHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChh
Confidence 34678899999999888777776653 1345558999999999999999999977431
Q ss_pred -----------EEEeeccceehhhhccchhhHHhHHHHHHh----cCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHH
Q 003795 479 -----------FFSISASQFVEIYVGVGASRVRSLYQEAKD----NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQ 543 (795)
Q Consensus 479 -----------~~~is~se~~~~~~g~~~~~l~~lf~~ar~----~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~ 543 (795)
+..++.+. ..+...++.+.+.+.. ..+.+++|||+|.+... .++.
T Consensus 76 c~~i~~~~h~dv~el~~~~------~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~--------------a~na 135 (504)
T PRK14963 76 CLAVRRGAHPDVLEIDAAS------NNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKS--------------AFNA 135 (504)
T ss_pred hHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHH--------------HHHH
Confidence 22222211 1122334555444433 23569999999876432 6888
Q ss_pred HHHhhhcccCCCcEEEEeccCCCCCCCccccCCCcccceecCCCCCHHHHHHHHHHHHccCCCC-ChhhHHHHHhhCCCC
Q 003795 544 LLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGM 622 (795)
Q Consensus 544 LL~~ld~~~~~~~VlVIatTN~~d~LdpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~~~~-~d~dl~~LA~~t~G~ 622 (795)
|+..++ ....++++|.+||.+..+.+.+.+ |+. .+.|.+|+.++....++..+....+. ++..+..++..+.|
T Consensus 136 LLk~LE--ep~~~t~~Il~t~~~~kl~~~I~S--Rc~-~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~G- 209 (504)
T PRK14963 136 LLKTLE--EPPEHVIFILATTEPEKMPPTILS--RTQ-HFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADG- 209 (504)
T ss_pred HHHHHH--hCCCCEEEEEEcCChhhCChHHhc--ceE-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 888888 344567888788888899999988 654 78999999999999999888765543 33446777777765
Q ss_pred cHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Q 003795 623 VGAELANIVEVAAINMMRDGRTEITTDDLLQAAQ 656 (795)
Q Consensus 623 sgadL~~lv~~A~~~A~~~~~~~It~edl~~Al~ 656 (795)
+.+++.++++.+.. . ...||.+++..++.
T Consensus 210 dlR~aln~Lekl~~----~-~~~It~~~V~~~l~ 238 (504)
T PRK14963 210 AMRDAESLLERLLA----L-GTPVTRKQVEEALG 238 (504)
T ss_pred CHHHHHHHHHHHHh----c-CCCCCHHHHHHHHC
Confidence 44555566665432 1 23588888777643
No 102
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.33 E-value=1.1e-11 Score=139.35 Aligned_cols=185 Identities=19% Similarity=0.295 Sum_probs=128.1
Q ss_pred cccCccCchHHHHHHHHHHHhccccccccccCcccCCceEEECCCCCchhHHHHHhhhhcccc-----------------
Q 003795 416 KFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVN----------------- 478 (795)
Q Consensus 416 ~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el~~~----------------- 478 (795)
.|+++.|.+.++..+.+++..-.. .+...+..++.++||+||+|+|||++|+++|..+...
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~--~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~ 80 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARA--DVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVL 80 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccc--cccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHh
Confidence 367888999999888888874322 2334556678889999999999999999999865332
Q ss_pred ------EEEeeccceehhhhccchhhHHhHHHHHHhc----CCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhh
Q 003795 479 ------FFSISASQFVEIYVGVGASRVRSLYQEAKDN----APSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCL 548 (795)
Q Consensus 479 ------~~~is~se~~~~~~g~~~~~l~~lf~~ar~~----~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~l 548 (795)
+..+.... ..-....++.+++.+... .+.|++|||+|.+... ..+.|+..|
T Consensus 81 ~~~hpD~~~i~~~~-----~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~--------------aanaLLk~L 141 (394)
T PRK07940 81 AGTHPDVRVVAPEG-----LSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTER--------------AANALLKAV 141 (394)
T ss_pred cCCCCCEEEecccc-----ccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHH--------------HHHHHHHHh
Confidence 11121111 011223467777776542 3469999999999654 568888888
Q ss_pred hcccCCCcEEEEeccCCCCCCCccccCCCcccceecCCCCCHHHHHHHHHHHHccCCCCChhhHHHHHhhCCCCcHHHHH
Q 003795 549 DGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELA 628 (795)
Q Consensus 549 d~~~~~~~VlVIatTN~~d~LdpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~~~~~d~dl~~LA~~t~G~sgadL~ 628 (795)
+. ...++++|.+|+.++.+.|++++ |+ ..+.|++|+.++...++.... .. +......++..+.|..+..+.
T Consensus 142 Ee--p~~~~~fIL~a~~~~~llpTIrS--Rc-~~i~f~~~~~~~i~~~L~~~~---~~-~~~~a~~la~~s~G~~~~A~~ 212 (394)
T PRK07940 142 EE--PPPRTVWLLCAPSPEDVLPTIRS--RC-RHVALRTPSVEAVAEVLVRRD---GV-DPETARRAARASQGHIGRARR 212 (394)
T ss_pred hc--CCCCCeEEEEECChHHChHHHHh--hC-eEEECCCCCHHHHHHHHHHhc---CC-CHHHHHHHHHHcCCCHHHHHH
Confidence 83 44556666566668999999998 66 389999999999887776332 22 234466788889988876664
Q ss_pred HH
Q 003795 629 NI 630 (795)
Q Consensus 629 ~l 630 (795)
-+
T Consensus 213 l~ 214 (394)
T PRK07940 213 LA 214 (394)
T ss_pred Hh
Confidence 43
No 103
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.33 E-value=1.7e-11 Score=140.33 Aligned_cols=271 Identities=14% Similarity=0.158 Sum_probs=169.3
Q ss_pred CceEEECCCCCchhHHHHHhhhhc-----cccEEEeeccceehhhhccchh---hHHhHHHHHHhcCCceeEhHHHHHHh
Q 003795 452 GGILLCGPPGVGKTLLAKAVAGEA-----GVNFFSISASQFVEIYVGVGAS---RVRSLYQEAKDNAPSVVFIDELDAVG 523 (795)
Q Consensus 452 ~giLL~GPpGtGKTtLakaLA~el-----~~~~~~is~se~~~~~~g~~~~---~l~~lf~~ar~~~p~Il~IDEID~l~ 523 (795)
.+++|+|++|+|||+|++++++++ +..++++++.++...+...... .+..+.+.. ..+++++|||++.+.
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~~--~~~dvLiIDDiq~l~ 219 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNEI--CQNDVLIIDDVQFLS 219 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHHh--ccCCEEEEecccccc
Confidence 348999999999999999999854 4567788888877665432211 111121222 346699999998774
Q ss_pred hhccCCCCCCcchHHHHHHHHHHhhhcccCCCcEEEEeccCCCC---CCCccccCCCcc--cceecCCCCCHHHHHHHHH
Q 003795 524 RERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPD---ILDPALVRPGRF--DRKIFIPKPGLIGRMEILK 598 (795)
Q Consensus 524 ~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVIatTN~~d---~LdpaLlrpgRF--d~~I~~~~Pd~~eR~~Il~ 598 (795)
+. +. ....|...++.....+..+||.+...|. .+++.|.+ || +.++.+.+|+.++|.+|++
T Consensus 220 ~k---------~~---~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~S--R~~~Gl~~~L~~pd~e~r~~iL~ 285 (450)
T PRK14087 220 YK---------EK---TNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLIT--RFNMGLSIAIQKLDNKTATAIIK 285 (450)
T ss_pred CC---------HH---HHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHH--HHhCCceeccCCcCHHHHHHHHH
Confidence 32 11 3334444444333444445555555554 35778888 77 4678899999999999999
Q ss_pred HHHccCCC---CChhhHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcC-CCccCHHHHHHHHHHHHhcccccccccchhhh
Q 003795 599 VHARKKPM---ADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDG-RTEITTDDLLQAAQIEERGMLDRKERSSETWR 674 (795)
Q Consensus 599 ~~l~~~~~---~~d~dl~~LA~~t~G~sgadL~~lv~~A~~~A~~~~-~~~It~edl~~Al~~~~~~~~~~~~~~~~~~~ 674 (795)
.++....+ .++..+..|+..+.| +.+.|.++++.....+.... ...||.+.+.+++.... .....
T Consensus 286 ~~~~~~gl~~~l~~evl~~Ia~~~~g-d~R~L~gaL~~l~~~a~~~~~~~~it~~~v~~~l~~~~----------~~~~~ 354 (450)
T PRK14087 286 KEIKNQNIKQEVTEEAINFISNYYSD-DVRKIKGSVSRLNFWSQQNPEEKIITIEIVSDLFRDIP----------TSKLG 354 (450)
T ss_pred HHHHhcCCCCCCCHHHHHHHHHccCC-CHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHhhcc----------ccccC
Confidence 98876442 334446777877764 78888899998875555442 25699999998876321 01112
Q ss_pred HHHHHHHHHHHHHHhcCCCCccceEEEecCCCcc----ccceeecccchhhhhccccHHHHHHHHHHHhChHHHHHHHhC
Q 003795 675 QVAINEAAMAVVAVNFPDLKNIEFVTIAPRAGRE----LGYVRMKMDHMKFKEGMLSRQSLLDHITVQLAPRAADELWCG 750 (795)
Q Consensus 675 ~va~hEaGhalva~~l~~~~~i~~vtI~pr~g~~----lG~~~~~~~e~~~~~~~~tr~~ll~~I~vlLaGRaAEel~~G 750 (795)
.+.+..+-++|+.++--. +..+.-..| ... --..+|.-.+. . ..-+..|...+|||-.-.|+++
T Consensus 355 ~~t~~~I~~~Va~~~~i~---~~dl~s~~R-~~~i~~~RqiamyL~r~~----t----~~sl~~IG~~FggrdHsTV~~a 422 (450)
T PRK14087 355 ILNVKKIKEVVSEKYGIS---VNAIDGKAR-SKSIVTARHIAMYLTKEI----L----NHTLAQIGEEFGGRDHTTVINA 422 (450)
T ss_pred CCCHHHHHHHHHHHcCCC---HHHHhCCCC-CccccHHHHHHHHHHHHH----c----CCCHHHHHHHhCCCChHHHHHH
Confidence 345666777777765321 222221122 111 02233333322 1 1237899999999999999998
Q ss_pred CCCcccchhhh
Q 003795 751 EGQLSTIWAET 761 (795)
Q Consensus 751 ~~~vstGa~~D 761 (795)
...+...-.+|
T Consensus 423 ~~ki~~~~~~d 433 (450)
T PRK14087 423 ERKIEKMLKKD 433 (450)
T ss_pred HHHHHHHHHhC
Confidence 86665554444
No 104
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.32 E-value=1.9e-11 Score=141.85 Aligned_cols=204 Identities=19% Similarity=0.244 Sum_probs=139.8
Q ss_pred cCccccccCccCchHHHHHHHHHHHhccccccccccCcccCCceEEECCCCCchhHHHHHhhhhccc-------------
Q 003795 411 RGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGV------------- 477 (795)
Q Consensus 411 ~~~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el~~------------- 477 (795)
+.++..|+++.|.+..+..+.+.+.. -+++..++|+||+|+||||+|+++|..+..
T Consensus 9 KyRP~~f~diiGq~~~v~~L~~~i~~-----------~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~ 77 (546)
T PRK14957 9 KYRPQSFAEVAGQQHALNSLVHALET-----------QKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCE 77 (546)
T ss_pred HHCcCcHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccH
Confidence 34678899999999888777666542 134556899999999999999999997653
Q ss_pred -----------cEEEeeccceehhhhccchhhHHhHHHHHHh----cCCceeEhHHHHHHhhhccCCCCCCcchHHHHHH
Q 003795 478 -----------NFFSISASQFVEIYVGVGASRVRSLYQEAKD----NAPSVVFIDELDAVGRERGLIKGSGGQERDATLN 542 (795)
Q Consensus 478 -----------~~~~is~se~~~~~~g~~~~~l~~lf~~ar~----~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~ 542 (795)
.++.++... ..+...++.+.+.+.. ....|++|||+|.+... .++
T Consensus 78 sC~~i~~~~~~dlieidaas------~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~--------------a~n 137 (546)
T PRK14957 78 NCVAINNNSFIDLIEIDAAS------RTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQ--------------SFN 137 (546)
T ss_pred HHHHHhcCCCCceEEeeccc------ccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccHH--------------HHH
Confidence 122222110 0111234455554432 23569999999988544 788
Q ss_pred HHHHhhhcccCCCcEEEEeccCCCCCCCccccCCCcccceecCCCCCHHHHHHHHHHHHccCCCC-ChhhHHHHHhhCCC
Q 003795 543 QLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDG 621 (795)
Q Consensus 543 ~LL~~ld~~~~~~~VlVIatTN~~d~LdpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~~~~-~d~dl~~LA~~t~G 621 (795)
.|+..|+ ....++++|++|+.+..+.+.+++ |. ..+.|.+++.++....+...+....+. ++..+..++..+.
T Consensus 138 aLLK~LE--epp~~v~fIL~Ttd~~kil~tI~S--Rc-~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~- 211 (546)
T PRK14957 138 ALLKTLE--EPPEYVKFILATTDYHKIPVTILS--RC-IQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAK- 211 (546)
T ss_pred HHHHHHh--cCCCCceEEEEECChhhhhhhHHH--he-eeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC-
Confidence 9998888 445667777777778888888888 65 489999999999888888777654433 3344667777775
Q ss_pred CcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHH
Q 003795 622 MVGAELANIVEVAAINMMRDGRTEITTDDLLQAA 655 (795)
Q Consensus 622 ~sgadL~~lv~~A~~~A~~~~~~~It~edl~~Al 655 (795)
.+.+++.+++..+.... + ..|+.+++.+++
T Consensus 212 GdlR~alnlLek~i~~~---~-~~It~~~V~~~l 241 (546)
T PRK14957 212 GSLRDALSLLDQAISFC---G-GELKQAQIKQML 241 (546)
T ss_pred CCHHHHHHHHHHHHHhc---c-CCCCHHHHHHHH
Confidence 46666667777665321 2 458887777654
No 105
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.32 E-value=2.1e-11 Score=147.73 Aligned_cols=212 Identities=19% Similarity=0.162 Sum_probs=142.3
Q ss_pred cCccccccCccCchHHHHHHHHHHHhccccccccccCcccCCceEEECCCCCchhHHHHHhhhhccccEE-------Ee-
Q 003795 411 RGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFF-------SI- 482 (795)
Q Consensus 411 ~~~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el~~~~~-------~i- 482 (795)
+.....|+++.|.+.++..|...+.. -+++..+||+||+||||||++++||..+.+... .+
T Consensus 8 KyRP~~f~eiiGqe~v~~~L~~~i~~-----------~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~ 76 (824)
T PRK07764 8 RYRPATFAEVIGQEHVTEPLSTALDS-----------GRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECD 76 (824)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHh-----------CCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccH
Confidence 45678899999988888776666542 234556899999999999999999998864211 10
Q ss_pred ec----------cceehhh--hccchhhHHhHHHHHH----hcCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHH
Q 003795 483 SA----------SQFVEIY--VGVGASRVRSLYQEAK----DNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLV 546 (795)
Q Consensus 483 s~----------se~~~~~--~g~~~~~l~~lf~~ar----~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~ 546 (795)
+| -++.... ...+...++.+.+.+. ...+.|+||||+|.+... .+|.||.
T Consensus 77 sC~~~~~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~--------------a~NaLLK 142 (824)
T PRK07764 77 SCVALAPGGPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQ--------------GFNALLK 142 (824)
T ss_pred HHHHHHcCCCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHH--------------HHHHHHH
Confidence 00 0011000 0011233444433332 244569999999999654 7889999
Q ss_pred hhhcccCCCcEEEEeccCCCCCCCccccCCCcccceecCCCCCHHHHHHHHHHHHccCCCC-ChhhHHHHHhhCCCCcHH
Q 003795 547 CLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGA 625 (795)
Q Consensus 547 ~ld~~~~~~~VlVIatTN~~d~LdpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~~~~-~d~dl~~LA~~t~G~sga 625 (795)
.|+ ....+++||++|+.++.|.+.|++ |+. ++.|..++.++...+|...+....+. ++..+..++..+.| +.+
T Consensus 143 ~LE--EpP~~~~fIl~tt~~~kLl~TIrS--Rc~-~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~sgG-dlR 216 (824)
T PRK07764 143 IVE--EPPEHLKFIFATTEPDKVIGTIRS--RTH-HYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGG-SVR 216 (824)
T ss_pred HHh--CCCCCeEEEEEeCChhhhhHHHHh--hee-EEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 998 445678888888888889999988 543 88999999999999998887665543 33445667777765 667
Q ss_pred HHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Q 003795 626 ELANIVEVAAINMMRDGRTEITTDDLLQAAQ 656 (795)
Q Consensus 626 dL~~lv~~A~~~A~~~~~~~It~edl~~Al~ 656 (795)
++.++++..+.. .+...||.+++...+.
T Consensus 217 ~Al~eLEKLia~---~~~~~IT~e~V~allg 244 (824)
T PRK07764 217 DSLSVLDQLLAG---AGPEGVTYERAVALLG 244 (824)
T ss_pred HHHHHHHHHHhh---cCCCCCCHHHHHHHhc
Confidence 777777765422 2345588887766543
No 106
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.32 E-value=3.2e-11 Score=135.77 Aligned_cols=195 Identities=22% Similarity=0.294 Sum_probs=128.6
Q ss_pred CCceEEECCCCCchhHHHHHhhhhc-----cccEEEeeccceehh----------hhcc-------chh-hHHhHHHHHH
Q 003795 451 PGGILLCGPPGVGKTLLAKAVAGEA-----GVNFFSISASQFVEI----------YVGV-------GAS-RVRSLYQEAK 507 (795)
Q Consensus 451 ~~giLL~GPpGtGKTtLakaLA~el-----~~~~~~is~se~~~~----------~~g~-------~~~-~l~~lf~~ar 507 (795)
+.+++|+||||+|||++++.++..+ +..++++++....+. ..+. ... .+..+.+...
T Consensus 55 ~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~ 134 (394)
T PRK00411 55 PLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLD 134 (394)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHH
Confidence 4458999999999999999999876 466788887654321 1110 001 1122223322
Q ss_pred h-cCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcccCCCcEEEEeccCCCC---CCCccccCCCcc-cce
Q 003795 508 D-NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPD---ILDPALVRPGRF-DRK 582 (795)
Q Consensus 508 ~-~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVIatTN~~d---~LdpaLlrpgRF-d~~ 582 (795)
. ..+.|++|||+|.+..... ...+..|+..++... ..++.+|+++|..+ .+++.+.+ || ...
T Consensus 135 ~~~~~~viviDE~d~l~~~~~----------~~~l~~l~~~~~~~~-~~~v~vI~i~~~~~~~~~l~~~~~s--~~~~~~ 201 (394)
T PRK00411 135 ERDRVLIVALDDINYLFEKEG----------NDVLYSLLRAHEEYP-GARIGVIGISSDLTFLYILDPRVKS--VFRPEE 201 (394)
T ss_pred hcCCEEEEEECCHhHhhccCC----------chHHHHHHHhhhccC-CCeEEEEEEECCcchhhhcCHHHHh--cCCcce
Confidence 2 3457899999999862110 125666665555432 33788888887664 46777665 55 357
Q ss_pred ecCCCCCHHHHHHHHHHHHccCC---CCChhhHHHHHhhCCCC--cHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHH
Q 003795 583 IFIPKPGLIGRMEILKVHARKKP---MADDVDYLAVASMTDGM--VGAELANIVEVAAINMMRDGRTEITTDDLLQAAQI 657 (795)
Q Consensus 583 I~~~~Pd~~eR~~Il~~~l~~~~---~~~d~dl~~LA~~t~G~--sgadL~~lv~~A~~~A~~~~~~~It~edl~~Al~~ 657 (795)
|.|++++.++..+|++.++.... ..++..+..+++.+.+. ..+.+..++..|...|..++...|+.+|+..|+..
T Consensus 202 i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~~~~I~~~~v~~a~~~ 281 (394)
T PRK00411 202 IYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREGSRKVTEEDVRKAYEK 281 (394)
T ss_pred eecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHH
Confidence 89999999999999998875421 12333355566665321 23455578888888888888889999999999874
Q ss_pred H
Q 003795 658 E 658 (795)
Q Consensus 658 ~ 658 (795)
.
T Consensus 282 ~ 282 (394)
T PRK00411 282 S 282 (394)
T ss_pred H
Confidence 3
No 107
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.31 E-value=3.5e-11 Score=138.73 Aligned_cols=212 Identities=21% Similarity=0.284 Sum_probs=142.0
Q ss_pred ccCccccccCccCchHHHHHHHHHHHhccccccccccCcccCCceEEECCCCCchhHHHHHhhhhcccc-------EEEe
Q 003795 410 ERGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVN-------FFSI 482 (795)
Q Consensus 410 ~~~~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el~~~-------~~~i 482 (795)
++..+..|.++.|.+..+..+.+.+.. -+++..++|+||+|+||||+|+++|..+++. .+..
T Consensus 8 ~kyRP~~f~diiGq~~i~~~L~~~i~~-----------~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c 76 (486)
T PRK14953 8 RKYRPKFFKEVIGQEIVVRILKNAVKL-----------QRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKC 76 (486)
T ss_pred HhhCCCcHHHccChHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCcc
Confidence 344677899999988888777766642 1244568999999999999999999987531 1110
Q ss_pred -ec-----cceehhh-----hccchhhHHhHHHHHHhc----CCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHh
Q 003795 483 -SA-----SQFVEIY-----VGVGASRVRSLYQEAKDN----APSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVC 547 (795)
Q Consensus 483 -s~-----se~~~~~-----~g~~~~~l~~lf~~ar~~----~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ 547 (795)
+| +.+.+.+ ...+...++.+.+.+... .+.|++|||+|.+... .++.|+..
T Consensus 77 ~nc~~i~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~--------------a~naLLk~ 142 (486)
T PRK14953 77 ENCVEIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKE--------------AFNALLKT 142 (486)
T ss_pred HHHHHHhcCCCCcEEEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHH--------------HHHHHHHH
Confidence 00 0001110 001122345555555432 3469999999987543 67888888
Q ss_pred hhcccCCCcEEEEeccCCCCCCCccccCCCcccceecCCCCCHHHHHHHHHHHHccCCCC-ChhhHHHHHhhCCCCcHHH
Q 003795 548 LDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAE 626 (795)
Q Consensus 548 ld~~~~~~~VlVIatTN~~d~LdpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~~~~-~d~dl~~LA~~t~G~sgad 626 (795)
++. ...++++|.+|+.++.+++++.+ |+. .+.|++|+.++....+..+++..++. ++..+..++..+.| +.++
T Consensus 143 LEe--pp~~~v~Il~tt~~~kl~~tI~S--Rc~-~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G-~lr~ 216 (486)
T PRK14953 143 LEE--PPPRTIFILCTTEYDKIPPTILS--RCQ-RFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEG-GMRD 216 (486)
T ss_pred Hhc--CCCCeEEEEEECCHHHHHHHHHH--hce-EEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHH
Confidence 883 44566777667778888889888 664 78999999999999999888766543 33346667777664 5666
Q ss_pred HHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Q 003795 627 LANIVEVAAINMMRDGRTEITTDDLLQAAQ 656 (795)
Q Consensus 627 L~~lv~~A~~~A~~~~~~~It~edl~~Al~ 656 (795)
+.++++.+... +...+|.+++..++.
T Consensus 217 al~~Ldkl~~~----~~~~It~~~V~~~lg 242 (486)
T PRK14953 217 AASLLDQASTY----GEGKVTIKVVEEFLG 242 (486)
T ss_pred HHHHHHHHHHh----cCCCcCHHHHHHHhC
Confidence 66777766532 344689988888654
No 108
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.31 E-value=2.1e-11 Score=126.42 Aligned_cols=179 Identities=16% Similarity=0.202 Sum_probs=116.7
Q ss_pred CCceEEECCCCCchhHHHHHhhhhc---cccEEEeeccceehhhhccchhhHHhHHHHHHhcCCceeEhHHHHHHhhhcc
Q 003795 451 PGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERG 527 (795)
Q Consensus 451 ~~giLL~GPpGtGKTtLakaLA~el---~~~~~~is~se~~~~~~g~~~~~l~~lf~~ar~~~p~Il~IDEID~l~~~r~ 527 (795)
+..++|+||+|||||+|+++++..+ +.+++.++++.+.... ..++.... .+.+++|||++.+....
T Consensus 38 ~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~~--------~~~~~~~~--~~~lLvIDdi~~l~~~~- 106 (226)
T TIGR03420 38 DRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQAD--------PEVLEGLE--QADLVCLDDVEAIAGQP- 106 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHhH--------HHHHhhcc--cCCEEEEeChhhhcCCh-
Confidence 4559999999999999999999876 4567788877654321 12333222 24589999999874321
Q ss_pred CCCCCCcchHHHHHHHHHHhhhcccCCCcEEEEeccCCCCCCC---ccccCCCcc--cceecCCCCCHHHHHHHHHHHHc
Q 003795 528 LIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILD---PALVRPGRF--DRKIFIPKPGLIGRMEILKVHAR 602 (795)
Q Consensus 528 ~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVIatTN~~d~Ld---paLlrpgRF--d~~I~~~~Pd~~eR~~Il~~~l~ 602 (795)
. ....|...++........+|+.++..+..++ +.+.+ || ...+.+++|+.+++..+++.++.
T Consensus 107 --------~---~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~--r~~~~~~i~l~~l~~~e~~~~l~~~~~ 173 (226)
T TIGR03420 107 --------E---WQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRT--RLAWGLVFQLPPLSDEEKIAALQSRAA 173 (226)
T ss_pred --------H---HHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHH--HHhcCeeEecCCCCHHHHHHHHHHHHH
Confidence 0 1223333333222222344444444443332 66766 55 47899999999999999998775
Q ss_pred cCCCC-ChhhHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHH
Q 003795 603 KKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAA 655 (795)
Q Consensus 603 ~~~~~-~d~dl~~LA~~t~G~sgadL~~lv~~A~~~A~~~~~~~It~edl~~Al 655 (795)
..... ++.-+..|+.. .+.+.+++.++++.+...+...+ ..|+.+.+.+.+
T Consensus 174 ~~~~~~~~~~l~~L~~~-~~gn~r~L~~~l~~~~~~~~~~~-~~i~~~~~~~~~ 225 (226)
T TIGR03420 174 RRGLQLPDEVADYLLRH-GSRDMGSLMALLDALDRASLAAK-RKITIPFVKEVL 225 (226)
T ss_pred HcCCCCCHHHHHHHHHh-ccCCHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHh
Confidence 44432 33346677775 56789999999998876555544 469998887764
No 109
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.30 E-value=5.4e-11 Score=130.69 Aligned_cols=211 Identities=20% Similarity=0.269 Sum_probs=131.3
Q ss_pred cccCccccccCccCchHHHHHHHHHHHhccccccccccCcccCCceEEECCCCCchhHHHHHhhhhcc-----ccEEEee
Q 003795 409 LERGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAG-----VNFFSIS 483 (795)
Q Consensus 409 ~~~~~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el~-----~~~~~is 483 (795)
.++..+..|+++.|....+..+..+... + . .++++|+||||||||+++++++.++. .+++.++
T Consensus 6 ~~ky~P~~~~~~~g~~~~~~~L~~~~~~----------~-~-~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~ 73 (337)
T PRK12402 6 TEKYRPALLEDILGQDEVVERLSRAVDS----------P-N-LPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFN 73 (337)
T ss_pred HHhhCCCcHHHhcCCHHHHHHHHHHHhC----------C-C-CceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEec
Confidence 3445667788888888877776665541 0 1 12489999999999999999999773 3456777
Q ss_pred ccceehhh-------------hcc-------chhhHHhHHHHHHh-----cCCceeEhHHHHHHhhhccCCCCCCcchHH
Q 003795 484 ASQFVEIY-------------VGV-------GASRVRSLYQEAKD-----NAPSVVFIDELDAVGRERGLIKGSGGQERD 538 (795)
Q Consensus 484 ~se~~~~~-------------~g~-------~~~~l~~lf~~ar~-----~~p~Il~IDEID~l~~~r~~~~~Sgge~~r 538 (795)
++++.... .+. ....++.+.+.... ..+.+++|||++.+...
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~------------- 140 (337)
T PRK12402 74 VADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALRED------------- 140 (337)
T ss_pred hhhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHH-------------
Confidence 76543210 110 01112222222222 22468999999877432
Q ss_pred HHHHHHHHhhhcccCCCcEEEEeccCCCCCCCccccCCCcccceecCCCCCHHHHHHHHHHHHccCCCC-ChhhHHHHHh
Q 003795 539 ATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVAS 617 (795)
Q Consensus 539 ~~l~~LL~~ld~~~~~~~VlVIatTN~~d~LdpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~~~~-~d~dl~~LA~ 617 (795)
..+.|...++... .+..+|.+|+.+..+.+.|.+ |+ ..+.+.+|+.++...+++..+...... ++..+..++.
T Consensus 141 -~~~~L~~~le~~~--~~~~~Il~~~~~~~~~~~L~s--r~-~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~ 214 (337)
T PRK12402 141 -AQQALRRIMEQYS--RTCRFIIATRQPSKLIPPIRS--RC-LPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAY 214 (337)
T ss_pred -HHHHHHHHHHhcc--CCCeEEEEeCChhhCchhhcC--Cc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 3445555555332 234455555556677778877 55 378999999999999999887765443 4445777887
Q ss_pred hCCCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Q 003795 618 MTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQ 656 (795)
Q Consensus 618 ~t~G~sgadL~~lv~~A~~~A~~~~~~~It~edl~~Al~ 656 (795)
.+.| + ++.+++.....+ .+...||.+++.+++.
T Consensus 215 ~~~g-d---lr~l~~~l~~~~--~~~~~It~~~v~~~~~ 247 (337)
T PRK12402 215 YAGG-D---LRKAILTLQTAA--LAAGEITMEAAYEALG 247 (337)
T ss_pred HcCC-C---HHHHHHHHHHHH--HcCCCCCHHHHHHHhC
Confidence 7743 3 444444333223 2234699999988754
No 110
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.30 E-value=3.3e-11 Score=140.80 Aligned_cols=206 Identities=20% Similarity=0.256 Sum_probs=141.1
Q ss_pred ccCccccccCccCchHHHHHHHHHHHhccccccccccCcccCCceEEECCCCCchhHHHHHhhhhcccc-----------
Q 003795 410 ERGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVN----------- 478 (795)
Q Consensus 410 ~~~~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el~~~----------- 478 (795)
++..+..|+++.|...++..+.+++.. -+++..+||+||+|+||||+|+++|..+.+.
T Consensus 8 ~KyRP~sf~dIiGQe~v~~~L~~ai~~-----------~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C 76 (624)
T PRK14959 8 ARYRPQTFAEVAGQETVKAILSRAAQE-----------NRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTC 76 (624)
T ss_pred HHhCCCCHHHhcCCHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCccc
Confidence 345678899999988887777766642 1345568999999999999999999987542
Q ss_pred -------------EEEeeccceehhhhccchhhHHhHHHHHH----hcCCceeEhHHHHHHhhhccCCCCCCcchHHHHH
Q 003795 479 -------------FFSISASQFVEIYVGVGASRVRSLYQEAK----DNAPSVVFIDELDAVGRERGLIKGSGGQERDATL 541 (795)
Q Consensus 479 -------------~~~is~se~~~~~~g~~~~~l~~lf~~ar----~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l 541 (795)
++.++... ......++.+.+.+. .....|++|||+|.+... .+
T Consensus 77 ~sC~~i~~g~hpDv~eId~a~------~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~--------------a~ 136 (624)
T PRK14959 77 EQCRKVTQGMHVDVVEIDGAS------NRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTRE--------------AF 136 (624)
T ss_pred HHHHHHhcCCCCceEEEeccc------ccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHH--------------HH
Confidence 22222211 011223344433332 233569999999998543 67
Q ss_pred HHHHHhhhcccCCCcEEEEeccCCCCCCCccccCCCcccceecCCCCCHHHHHHHHHHHHccCCC-CChhhHHHHHhhCC
Q 003795 542 NQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPM-ADDVDYLAVASMTD 620 (795)
Q Consensus 542 ~~LL~~ld~~~~~~~VlVIatTN~~d~LdpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~~~-~~d~dl~~LA~~t~ 620 (795)
+.|+..|+. ...++++|++||.+..+.+.+++ |+. .|.|++++.++...+++..+..... .++..+..++..+.
T Consensus 137 naLLk~LEE--P~~~~ifILaTt~~~kll~TI~S--Rcq-~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~s~ 211 (624)
T PRK14959 137 NALLKTLEE--PPARVTFVLATTEPHKFPVTIVS--RCQ-HFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAA 211 (624)
T ss_pred HHHHHHhhc--cCCCEEEEEecCChhhhhHHHHh--hhh-ccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 888888883 44578888888888888888888 664 7899999999999998887765543 34445677787776
Q ss_pred CCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Q 003795 621 GMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQ 656 (795)
Q Consensus 621 G~sgadL~~lv~~A~~~A~~~~~~~It~edl~~Al~ 656 (795)
|- .+++.+++..+. ..+...|+.+++..++.
T Consensus 212 Gd-lR~Al~lLeqll----~~g~~~It~d~V~~~lg 242 (624)
T PRK14959 212 GS-VRDSMSLLGQVL----ALGESRLTIDGARGVLG 242 (624)
T ss_pred CC-HHHHHHHHHHHH----HhcCCCcCHHHHHHHhC
Confidence 53 444445555442 23555799998877753
No 111
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.30 E-value=3.7e-11 Score=142.26 Aligned_cols=212 Identities=22% Similarity=0.297 Sum_probs=145.7
Q ss_pred ccCccccccCccCchHHHHHHHHHHHhccccccccccCcccCCceEEECCCCCchhHHHHHhhhhccccEEEe---eccc
Q 003795 410 ERGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSI---SASQ 486 (795)
Q Consensus 410 ~~~~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~i---s~se 486 (795)
++.++..|.++.|.+.++..+.+.+.. -+++.++||+||+|+|||++|+++|..+.+.-... .|+.
T Consensus 10 ~KyRP~~f~dIiGQe~~v~~L~~aI~~-----------~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~ 78 (725)
T PRK07133 10 RKYRPKTFDDIVGQDHIVQTLKNIIKS-----------NKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQE 78 (725)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhH
Confidence 345678899999999888777776652 13456689999999999999999999875431100 0110
Q ss_pred e-------ehhhhc-----cchhhHHhHHHHHHhc----CCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhc
Q 003795 487 F-------VEIYVG-----VGASRVRSLYQEAKDN----APSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDG 550 (795)
Q Consensus 487 ~-------~~~~~g-----~~~~~l~~lf~~ar~~----~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~ 550 (795)
. ...+.+ .+...++.+.+.+... .+.|++|||+|.+... .++.|+..|+
T Consensus 79 C~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~--------------A~NALLKtLE- 143 (725)
T PRK07133 79 CIENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKS--------------AFNALLKTLE- 143 (725)
T ss_pred HHHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHH--------------HHHHHHHHhh-
Confidence 0 000100 1233466777666543 3469999999988543 7889999998
Q ss_pred ccCCCcEEEEeccCCCCCCCccccCCCcccceecCCCCCHHHHHHHHHHHHccCCCC-ChhhHHHHHhhCCCCcHHHHHH
Q 003795 551 FEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAELAN 629 (795)
Q Consensus 551 ~~~~~~VlVIatTN~~d~LdpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~~~~-~d~dl~~LA~~t~G~sgadL~~ 629 (795)
.....+++|.+|+.++.|++.+++ |+. .+.|.+|+.++....+...+...++. ++..+..+|..+.| +.+++.+
T Consensus 144 -EPP~~tifILaTte~~KLl~TI~S--Rcq-~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~G-slR~Als 218 (725)
T PRK07133 144 -EPPKHVIFILATTEVHKIPLTILS--RVQ-RFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSG-SLRDALS 218 (725)
T ss_pred -cCCCceEEEEEcCChhhhhHHHHh--hce-eEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHH
Confidence 455678888888888999999998 765 89999999999999888777655443 23336667777764 4566666
Q ss_pred HHHHHHHHHHHcCCCccCHHHHHHHHH
Q 003795 630 IVEVAAINMMRDGRTEITTDDLLQAAQ 656 (795)
Q Consensus 630 lv~~A~~~A~~~~~~~It~edl~~Al~ 656 (795)
++..+... +...|+.+++..++.
T Consensus 219 lLekl~~y----~~~~It~e~V~ellg 241 (725)
T PRK07133 219 IAEQVSIF----GNNKITLKNVEELFG 241 (725)
T ss_pred HHHHHHHh----ccCCCCHHHHHHHHc
Confidence 66655432 233488888877643
No 112
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.30 E-value=2.1e-11 Score=139.51 Aligned_cols=210 Identities=21% Similarity=0.292 Sum_probs=153.5
Q ss_pred CccccccCccCchHHHHHHHHHHHhccccccccccCcccCCceEEECCCCCchhHHHHHhhhhccccE-------EE---
Q 003795 412 GVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNF-------FS--- 481 (795)
Q Consensus 412 ~~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el~~~~-------~~--- 481 (795)
.++..|+++.|.+.++..+.+++.. -++..+.+|+||.||||||+||.+|..+++.- +.
T Consensus 10 yRP~~F~evvGQe~v~~~L~nal~~-----------~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~ 78 (515)
T COG2812 10 YRPKTFDDVVGQEHVVKTLSNALEN-----------GRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCIS 78 (515)
T ss_pred hCcccHHHhcccHHHHHHHHHHHHh-----------CcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhh
Confidence 4678899999988888888877763 24456689999999999999999999875532 11
Q ss_pred ---eeccceehh-----hhccchhhHHhHHHHHHh----cCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhh
Q 003795 482 ---ISASQFVEI-----YVGVGASRVRSLYQEAKD----NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLD 549 (795)
Q Consensus 482 ---is~se~~~~-----~~g~~~~~l~~lf~~ar~----~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld 549 (795)
++-+.+.+. -...+...++.+.+.+.. ..+.|.+|||++.+... .+|.||..++
T Consensus 79 Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~--------------afNALLKTLE 144 (515)
T COG2812 79 CKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQ--------------AFNALLKTLE 144 (515)
T ss_pred hHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHH--------------HHHHHhcccc
Confidence 111111111 111233456777777653 33569999999998654 8999999999
Q ss_pred cccCCCcEEEEeccCCCCCCCccccCCCcccceecCCCCCHHHHHHHHHHHHccCCCCChh-hHHHHHhhCCCCcHHHHH
Q 003795 550 GFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDV-DYLAVASMTDGMVGAELA 628 (795)
Q Consensus 550 ~~~~~~~VlVIatTN~~d~LdpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~~~~~d~-dl~~LA~~t~G~sgadL~ 628 (795)
.+..+|++|.+|..+..+++.+++ |.. ++.|...+.++....+...+.+..+.-+. .+..+|+...| |.+|..
T Consensus 145 --EPP~hV~FIlATTe~~Kip~TIlS--Rcq-~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~G-s~RDal 218 (515)
T COG2812 145 --EPPSHVKFILATTEPQKIPNTILS--RCQ-RFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEG-SLRDAL 218 (515)
T ss_pred --cCccCeEEEEecCCcCcCchhhhh--ccc-cccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCC-ChhhHH
Confidence 778899999999999999999998 554 67788888999888888888776665443 46667777765 667777
Q ss_pred HHHHHHHHHHHHcCCCccCHHHHHHHHH
Q 003795 629 NIVEVAAINMMRDGRTEITTDDLLQAAQ 656 (795)
Q Consensus 629 ~lv~~A~~~A~~~~~~~It~edl~~Al~ 656 (795)
+++++|... +...|+.+++...+.
T Consensus 219 slLDq~i~~----~~~~It~~~v~~~lG 242 (515)
T COG2812 219 SLLDQAIAF----GEGEITLESVRDMLG 242 (515)
T ss_pred HHHHHHHHc----cCCcccHHHHHHHhC
Confidence 888877633 235678777776654
No 113
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.29 E-value=2.2e-11 Score=142.47 Aligned_cols=206 Identities=19% Similarity=0.218 Sum_probs=143.0
Q ss_pred cCccccccCccCchHHHHHHHHHHHhccccccccccCcccCCceEEECCCCCchhHHHHHhhhhcccc------------
Q 003795 411 RGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVN------------ 478 (795)
Q Consensus 411 ~~~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el~~~------------ 478 (795)
+.++..|+++.|.+.++..+.+.+.. -+++..+||+||+||||||+|+++|+.+.+.
T Consensus 6 kyRP~~f~eivGq~~i~~~L~~~i~~-----------~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~ 74 (584)
T PRK14952 6 KYRPATFAEVVGQEHVTEPLSSALDA-----------GRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCE 74 (584)
T ss_pred HhCCCcHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccH
Confidence 34677899999988888777766642 2355668999999999999999999977532
Q ss_pred --------------EEEeeccceehhhhccchhhHHhHHHHHHh----cCCceeEhHHHHHHhhhccCCCCCCcchHHHH
Q 003795 479 --------------FFSISASQFVEIYVGVGASRVRSLYQEAKD----NAPSVVFIDELDAVGRERGLIKGSGGQERDAT 540 (795)
Q Consensus 479 --------------~~~is~se~~~~~~g~~~~~l~~lf~~ar~----~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~ 540 (795)
++.++.+. ..+...++.+.+.+.. ....|++|||+|.+... .
T Consensus 75 ~C~~i~~~~~~~~dvieidaas------~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~--------------A 134 (584)
T PRK14952 75 SCVALAPNGPGSIDVVELDAAS------HGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTA--------------G 134 (584)
T ss_pred HHHHhhcccCCCceEEEecccc------ccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHH--------------H
Confidence 11111110 0122334444444432 23469999999888543 7
Q ss_pred HHHHHHhhhcccCCCcEEEEeccCCCCCCCccccCCCcccceecCCCCCHHHHHHHHHHHHccCCCC-ChhhHHHHHhhC
Q 003795 541 LNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMT 619 (795)
Q Consensus 541 l~~LL~~ld~~~~~~~VlVIatTN~~d~LdpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~~~~-~d~dl~~LA~~t 619 (795)
++.||..|+ ....++++|.+|+.++.+.+++++ |. ..+.|..++.++....+...+...+.. ++..+..++..+
T Consensus 135 ~NALLK~LE--Epp~~~~fIL~tte~~kll~TI~S--Rc-~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s 209 (584)
T PRK14952 135 FNALLKIVE--EPPEHLIFIFATTEPEKVLPTIRS--RT-HHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAG 209 (584)
T ss_pred HHHHHHHHh--cCCCCeEEEEEeCChHhhHHHHHH--hc-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 889999998 556688888888888999999998 64 489999999999998888887765542 333455566655
Q ss_pred CCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Q 003795 620 DGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQ 656 (795)
Q Consensus 620 ~G~sgadL~~lv~~A~~~A~~~~~~~It~edl~~Al~ 656 (795)
. .+.+++.++++..+.. .+...||.+++...+.
T Consensus 210 ~-GdlR~aln~Ldql~~~---~~~~~It~~~v~~llg 242 (584)
T PRK14952 210 G-GSPRDTLSVLDQLLAG---AADTHVTYQRALGLLG 242 (584)
T ss_pred C-CCHHHHHHHHHHHHhc---cCCCCcCHHHHHHHHC
Confidence 4 5666777777765432 2345688888877654
No 114
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.29 E-value=4.1e-11 Score=141.13 Aligned_cols=202 Identities=22% Similarity=0.311 Sum_probs=143.5
Q ss_pred CccccccCccCchHHHHHHHHHHHhccccccccccCcccCCceEEECCCCCchhHHHHHhhhhcccc-------------
Q 003795 412 GVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVN------------- 478 (795)
Q Consensus 412 ~~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el~~~------------- 478 (795)
.++..|+++.|.+.++..+.+.+.. -+++..+||+||+|+||||+++++|+.+.+.
T Consensus 10 ~RP~~f~~iiGq~~v~~~L~~~i~~-----------~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~ 78 (576)
T PRK14965 10 YRPQTFSDLTGQEHVSRTLQNAIDT-----------GRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPP 78 (576)
T ss_pred hCCCCHHHccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHH
Confidence 4678899999999888777776652 2456678999999999999999999987542
Q ss_pred -----------EEEeeccceehhhhccchhhHHhHHHHHHhc----CCceeEhHHHHHHhhhccCCCCCCcchHHHHHHH
Q 003795 479 -----------FFSISASQFVEIYVGVGASRVRSLYQEAKDN----APSVVFIDELDAVGRERGLIKGSGGQERDATLNQ 543 (795)
Q Consensus 479 -----------~~~is~se~~~~~~g~~~~~l~~lf~~ar~~----~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~ 543 (795)
++.+++.. ..+...++.+.+.+... ...|++|||+|.+... .++.
T Consensus 79 c~~i~~g~~~d~~eid~~s------~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~--------------a~na 138 (576)
T PRK14965 79 CVEITEGRSVDVFEIDGAS------NTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTN--------------AFNA 138 (576)
T ss_pred HHHHhcCCCCCeeeeeccC------ccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHH--------------HHHH
Confidence 11222111 11223456666665432 2458999999988644 7889
Q ss_pred HHHhhhcccCCCcEEEEeccCCCCCCCccccCCCcccceecCCCCCHHHHHHHHHHHHccCCCC-ChhhHHHHHhhCCCC
Q 003795 544 LLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGM 622 (795)
Q Consensus 544 LL~~ld~~~~~~~VlVIatTN~~d~LdpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~~~~-~d~dl~~LA~~t~G~ 622 (795)
|+..|+ ....++++|.+||.++.|.+.+++ |+. .+.|..++..+....+...++...+. ++..+..++..+.|
T Consensus 139 LLk~LE--epp~~~~fIl~t~~~~kl~~tI~S--Rc~-~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~G- 212 (576)
T PRK14965 139 LLKTLE--EPPPHVKFIFATTEPHKVPITILS--RCQ-RFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDG- 212 (576)
T ss_pred HHHHHH--cCCCCeEEEEEeCChhhhhHHHHH--hhh-hhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-
Confidence 999998 456688888888889999999998 654 88899999999888888777665443 34456778888776
Q ss_pred cHHHHHHHHHHHHHHHHHcCCCccCHHHHHHH
Q 003795 623 VGAELANIVEVAAINMMRDGRTEITTDDLLQA 654 (795)
Q Consensus 623 sgadL~~lv~~A~~~A~~~~~~~It~edl~~A 654 (795)
+.+++.++++.+.... + ..|+.+++...
T Consensus 213 ~lr~al~~Ldqliay~---g-~~It~edV~~l 240 (576)
T PRK14965 213 SMRDSLSTLDQVLAFC---G-DAVGDDDVAEL 240 (576)
T ss_pred CHHHHHHHHHHHHHhc---c-CCCCHHHHHHH
Confidence 5566667766554322 2 34888877665
No 115
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.29 E-value=1.9e-11 Score=137.41 Aligned_cols=219 Identities=24% Similarity=0.287 Sum_probs=131.5
Q ss_pred ccCchHHHHHHHHHHHh-ccccc----cccccCcccC-CceEEECCCCCchhHHHHHhhhhccccEEEeeccceeh-hhh
Q 003795 420 VAGLGKIRLELEEIVKF-FTHGE----MYRRRGVRIP-GGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVE-IYV 492 (795)
Q Consensus 420 ~~gl~~~~~~l~~lv~~-~~~~~----~~~~~gl~i~-~giLL~GPpGtGKTtLakaLA~el~~~~~~is~se~~~-~~~ 492 (795)
+.|.++.+..+..++.. +.... .....+..+. .++||+||||||||++|++||..++.++..++++.+.. .|+
T Consensus 79 ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gyv 158 (413)
T TIGR00382 79 VIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGYV 158 (413)
T ss_pred ecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhccccccc
Confidence 56777777666554421 11100 0000112222 35999999999999999999999999999998887653 477
Q ss_pred ccchhh-HHhHHHH----HHhcCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhccc-----------CCCc
Q 003795 493 GVGASR-VRSLYQE----AKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE-----------GRGN 556 (795)
Q Consensus 493 g~~~~~-l~~lf~~----ar~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~-----------~~~~ 556 (795)
|..... +..+++. .....++|+||||||.+.......+.+.+-....+++.||+.|++.. +..+
T Consensus 159 G~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~~~ 238 (413)
T TIGR00382 159 GEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPYQE 238 (413)
T ss_pred cccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecccCCCccccCCC
Confidence 765332 2333322 12345679999999999764321111111111136777777776532 2345
Q ss_pred EEEEeccCCCC--------------------------------------------------CCCccccCCCcccceecCC
Q 003795 557 VITIASTNRPD--------------------------------------------------ILDPALVRPGRFDRKIFIP 586 (795)
Q Consensus 557 VlVIatTN~~d--------------------------------------------------~LdpaLlrpgRFd~~I~~~ 586 (795)
.++|.|+|... .+.|+|+. |+|.++.|.
T Consensus 239 ~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEflg--Rld~Iv~f~ 316 (413)
T TIGR00382 239 FIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFIG--RLPVIATLE 316 (413)
T ss_pred eEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHhC--CCCeEeecC
Confidence 77788877610 03466665 999999999
Q ss_pred CCCHHHHHHHHHHH----Hcc-------CCCC---ChhhHHHHHhh--CCCCcHHHHHHHHHHHHHHHHH
Q 003795 587 KPGLIGRMEILKVH----ARK-------KPMA---DDVDYLAVASM--TDGMVGAELANIVEVAAINMMR 640 (795)
Q Consensus 587 ~Pd~~eR~~Il~~~----l~~-------~~~~---~d~dl~~LA~~--t~G~sgadL~~lv~~A~~~A~~ 640 (795)
+.+.++..+|+... ++. ..+. ++.-+..|+.. ...+-.+.|..+++....-.+.
T Consensus 317 pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~GAR~Lr~iie~~l~~~m~ 386 (413)
T TIGR00382 317 KLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKALERKTGARGLRSIVEGLLLDVMF 386 (413)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCCCCchHHHHHHHHhhHHHHh
Confidence 99999999998753 211 1111 12224555654 3445567777777766654443
No 116
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.28 E-value=2.4e-11 Score=132.78 Aligned_cols=207 Identities=19% Similarity=0.216 Sum_probs=129.0
Q ss_pred ccccCccccccCccCchHHHHHHHHHHHhccccccccccCcccCCceEEECCCCCchhHHHHHhhhhccccEEEeeccce
Q 003795 408 YLERGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQF 487 (795)
Q Consensus 408 ~~~~~~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~se~ 487 (795)
+.++..+..|+++.|.+..+..+...+.. -..|..++|+||+|+|||+++++++...+.+++.+++++
T Consensus 11 w~~kyrP~~~~~~~~~~~~~~~l~~~~~~-----------~~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~- 78 (316)
T PHA02544 11 WEQKYRPSTIDECILPAADKETFKSIVKK-----------GRIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD- 78 (316)
T ss_pred ceeccCCCcHHHhcCcHHHHHHHHHHHhc-----------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc-
Confidence 44566778899999988888777666541 123455777999999999999999999988888888876
Q ss_pred ehhhhccchhhHHhHHHHHH-hcCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcccCCCcEEEEeccCCC
Q 003795 488 VEIYVGVGASRVRSLYQEAK-DNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRP 566 (795)
Q Consensus 488 ~~~~~g~~~~~l~~lf~~ar-~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVIatTN~~ 566 (795)
.. +......+........ ...+.+++|||+|.+... . ....|...++. ...++.+|.+||.+
T Consensus 79 ~~--~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~~----------~---~~~~L~~~le~--~~~~~~~Ilt~n~~ 141 (316)
T PHA02544 79 CR--IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGLA----------D---AQRHLRSFMEA--YSKNCSFIITANNK 141 (316)
T ss_pred cc--HHHHHHHHHHHHHhhcccCCCeEEEEECcccccCH----------H---HHHHHHHHHHh--cCCCceEEEEcCCh
Confidence 21 1111111211111111 134679999999877322 0 22333334553 23566788899999
Q ss_pred CCCCccccCCCcccceecCCCCCHHHHHHHHHHHHcc-------CCCC-ChhhHHHHHhhCCCCcHHHHHHHHHHHHHHH
Q 003795 567 DILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARK-------KPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINM 638 (795)
Q Consensus 567 d~LdpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~-------~~~~-~d~dl~~LA~~t~G~sgadL~~lv~~A~~~A 638 (795)
+.+++++++ ||. .+.|+.|+.+++..+++..+.. .... ++..+..++....| +++.+++.....+
T Consensus 142 ~~l~~~l~s--R~~-~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~i~~~al~~l~~~~~~----d~r~~l~~l~~~~ 214 (316)
T PHA02544 142 NGIIEPLRS--RCR-VIDFGVPTKEEQIEMMKQMIVRCKGILEAEGVEVDMKVLAALVKKNFP----DFRRTINELQRYA 214 (316)
T ss_pred hhchHHHHh--hce-EEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCC----CHHHHHHHHHHHH
Confidence 999999998 875 7899999999998887644322 1111 22234566665543 3444443333222
Q ss_pred HHcCCCccCHHHHHH
Q 003795 639 MRDGRTEITTDDLLQ 653 (795)
Q Consensus 639 ~~~~~~~It~edl~~ 653 (795)
. ...++.+++..
T Consensus 215 --~-~~~i~~~~l~~ 226 (316)
T PHA02544 215 --S-TGKIDAGILSE 226 (316)
T ss_pred --c-cCCCCHHHHHH
Confidence 1 23477666554
No 117
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.28 E-value=3.6e-11 Score=139.85 Aligned_cols=205 Identities=21% Similarity=0.282 Sum_probs=141.1
Q ss_pred ccCccccccCccCchHHHHHHHHHHHhccccccccccCcccCCceEEECCCCCchhHHHHHhhhhccc------------
Q 003795 410 ERGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGV------------ 477 (795)
Q Consensus 410 ~~~~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el~~------------ 477 (795)
++.++..|+++.|.+..+..+.+.+.. -+++.++||+||+|+|||++|+++|..+.+
T Consensus 8 ~KyRP~~F~dIIGQe~iv~~L~~aI~~-----------~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C 76 (605)
T PRK05896 8 RKYRPHNFKQIIGQELIKKILVNAILN-----------NKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSC 76 (605)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCccc
Confidence 344678899999988888666655431 244567999999999999999999997642
Q ss_pred ------------cEEEeeccceehhhhccchhhHHhHHHHHHhc----CCceeEhHHHHHHhhhccCCCCCCcchHHHHH
Q 003795 478 ------------NFFSISASQFVEIYVGVGASRVRSLYQEAKDN----APSVVFIDELDAVGRERGLIKGSGGQERDATL 541 (795)
Q Consensus 478 ------------~~~~is~se~~~~~~g~~~~~l~~lf~~ar~~----~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l 541 (795)
.++.++.+. ..+...++.+.+.+... ...|++|||+|.+... ..
T Consensus 77 ~sCr~i~~~~h~DiieIdaas------~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~--------------A~ 136 (605)
T PRK05896 77 SVCESINTNQSVDIVELDAAS------NNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTS--------------AW 136 (605)
T ss_pred HHHHHHHcCCCCceEEecccc------ccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHH--------------HH
Confidence 122222111 01223356666555432 2358999999987543 67
Q ss_pred HHHHHhhhcccCCCcEEEEeccCCCCCCCccccCCCcccceecCCCCCHHHHHHHHHHHHccCCC-CChhhHHHHHhhCC
Q 003795 542 NQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPM-ADDVDYLAVASMTD 620 (795)
Q Consensus 542 ~~LL~~ld~~~~~~~VlVIatTN~~d~LdpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~~~-~~d~dl~~LA~~t~ 620 (795)
+.|+..|+ ....++++|.+|+.+..+.+++++ |+. .+.|++|+..+....++..+...+. .++..+..++..+.
T Consensus 137 NaLLKtLE--EPp~~tvfIL~Tt~~~KLl~TI~S--Rcq-~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~ 211 (605)
T PRK05896 137 NALLKTLE--EPPKHVVFIFATTEFQKIPLTIIS--RCQ-RYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLAD 211 (605)
T ss_pred HHHHHHHH--hCCCcEEEEEECCChHhhhHHHHh--hhh-hcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 88888888 455678888888888999999998 665 7999999999999988887765543 23444667777776
Q ss_pred CCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHH
Q 003795 621 GMVGAELANIVEVAAINMMRDGRTEITTDDLLQAA 655 (795)
Q Consensus 621 G~sgadL~~lv~~A~~~A~~~~~~~It~edl~~Al 655 (795)
| +.+++.++++..... .+ ..|+.+++...+
T Consensus 212 G-dlR~AlnlLekL~~y---~~-~~It~e~V~ell 241 (605)
T PRK05896 212 G-SLRDGLSILDQLSTF---KN-SEIDIEDINKTF 241 (605)
T ss_pred C-cHHHHHHHHHHHHhh---cC-CCCCHHHHHHHh
Confidence 5 566666666654322 23 238888887754
No 118
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.27 E-value=8.3e-11 Score=138.32 Aligned_cols=212 Identities=19% Similarity=0.216 Sum_probs=147.5
Q ss_pred ccCccccccCccCchHHHHHHHHHHHhccccccccccCcccCCceEEECCCCCchhHHHHHhhhhccccEEEee------
Q 003795 410 ERGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSIS------ 483 (795)
Q Consensus 410 ~~~~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~is------ 483 (795)
++..+..|+++.|.+..+..+.+++.. -+++.++||+||+|+||||+|+++|+.+.+.....+
T Consensus 16 ~KyRP~~f~dliGq~~~v~~L~~~~~~-----------gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~ 84 (598)
T PRK09111 16 RKYRPQTFDDLIGQEAMVRTLTNAFET-----------GRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTID 84 (598)
T ss_pred hhhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccc
Confidence 344677899999999888777776542 245677999999999999999999998754321111
Q ss_pred -cc--------------ceehhh--hccchhhHHhHHHHHHhc----CCceeEhHHHHHHhhhccCCCCCCcchHHHHHH
Q 003795 484 -AS--------------QFVEIY--VGVGASRVRSLYQEAKDN----APSVVFIDELDAVGRERGLIKGSGGQERDATLN 542 (795)
Q Consensus 484 -~s--------------e~~~~~--~g~~~~~l~~lf~~ar~~----~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~ 542 (795)
|+ ++.... -..+...++.+.+.+... .+.|++|||+|.+... .++
T Consensus 85 ~cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~--------------a~n 150 (598)
T PRK09111 85 LCGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTA--------------AFN 150 (598)
T ss_pred cCcccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHH--------------HHH
Confidence 00 000000 001223456677666533 2569999999988543 688
Q ss_pred HHHHhhhcccCCCcEEEEeccCCCCCCCccccCCCcccceecCCCCCHHHHHHHHHHHHccCCCC-ChhhHHHHHhhCCC
Q 003795 543 QLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDG 621 (795)
Q Consensus 543 ~LL~~ld~~~~~~~VlVIatTN~~d~LdpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~~~~-~d~dl~~LA~~t~G 621 (795)
.|+..|+ ....++++|.+|+..+.+.+.+++ |+. .+.|..|+.++....++..+.+.... ++..+..++..+.|
T Consensus 151 aLLKtLE--ePp~~~~fIl~tte~~kll~tI~S--Rcq-~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~G 225 (598)
T PRK09111 151 ALLKTLE--EPPPHVKFIFATTEIRKVPVTVLS--RCQ-RFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEG 225 (598)
T ss_pred HHHHHHH--hCCCCeEEEEEeCChhhhhHHHHh--hee-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 9998888 445567777777888888889988 653 79999999999999998877665443 33446667777765
Q ss_pred CcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Q 003795 622 MVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQ 656 (795)
Q Consensus 622 ~sgadL~~lv~~A~~~A~~~~~~~It~edl~~Al~ 656 (795)
+.+++.++++.+... +...||.+++...+.
T Consensus 226 -dlr~al~~Ldkli~~----g~g~It~e~V~~llg 255 (598)
T PRK09111 226 -SVRDGLSLLDQAIAH----GAGEVTAEAVRDMLG 255 (598)
T ss_pred -CHHHHHHHHHHHHhh----cCCCcCHHHHHHHhC
Confidence 677777877765533 345699999988764
No 119
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.27 E-value=7.4e-11 Score=131.86 Aligned_cols=211 Identities=20% Similarity=0.278 Sum_probs=137.7
Q ss_pred cCccccccCccCchHHHHHHHHHHHhccccccccccCcccCCceEEECCCCCchhHHHHHhhhhccccEEEeeccce---
Q 003795 411 RGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQF--- 487 (795)
Q Consensus 411 ~~~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~se~--- 487 (795)
+..+..|+++.|.+..+..+...+.. -.++.+++|+||+|+|||+++++++..+...........+
T Consensus 10 k~rP~~~~~iig~~~~~~~l~~~i~~-----------~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~ 78 (367)
T PRK14970 10 KYRPQTFDDVVGQSHITNTLLNAIEN-----------NHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFN 78 (367)
T ss_pred HHCCCcHHhcCCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcc
Confidence 34678899999988887666655542 1345679999999999999999999987542111100000
Q ss_pred -e--hhhhccchhhHHhHHHHHHhc----CCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcccCCCcEEEE
Q 003795 488 -V--EIYVGVGASRVRSLYQEAKDN----APSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITI 560 (795)
Q Consensus 488 -~--~~~~g~~~~~l~~lf~~ar~~----~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVI 560 (795)
. +.........++.+++.+... .+.+++|||++.+... .++.|+..++. ...+.++|
T Consensus 79 ~~~l~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~~--------------~~~~ll~~le~--~~~~~~~I 142 (367)
T PRK14970 79 IFELDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSA--------------AFNAFLKTLEE--PPAHAIFI 142 (367)
T ss_pred eEEeccccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCHH--------------HHHHHHHHHhC--CCCceEEE
Confidence 0 000111224456666665432 2469999999987543 56777777764 34456666
Q ss_pred eccCCCCCCCccccCCCcccceecCCCCCHHHHHHHHHHHHccCCC-CChhhHHHHHhhCCCCcHHHHHHHHHHHHHHHH
Q 003795 561 ASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPM-ADDVDYLAVASMTDGMVGAELANIVEVAAINMM 639 (795)
Q Consensus 561 atTN~~d~LdpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~~~-~~d~dl~~LA~~t~G~sgadL~~lv~~A~~~A~ 639 (795)
.+|+....+.+++.+ |+. .+.+++|+.++...++...+...+. .++..+..++..+.| +.+.+.+.++.....+
T Consensus 143 l~~~~~~kl~~~l~s--r~~-~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~g-dlr~~~~~lekl~~y~- 217 (367)
T PRK14970 143 LATTEKHKIIPTILS--RCQ-IFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADG-ALRDALSIFDRVVTFC- 217 (367)
T ss_pred EEeCCcccCCHHHHh--cce-eEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHHHhc-
Confidence 667777888899987 553 7899999999999888877766554 344557777777654 5556656665544322
Q ss_pred HcCCCccCHHHHHHHHH
Q 003795 640 RDGRTEITTDDLLQAAQ 656 (795)
Q Consensus 640 ~~~~~~It~edl~~Al~ 656 (795)
+.. ||.+++...+.
T Consensus 218 --~~~-it~~~v~~~~~ 231 (367)
T PRK14970 218 --GKN-ITRQAVTENLN 231 (367)
T ss_pred --CCC-CCHHHHHHHhC
Confidence 333 88888776654
No 120
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.25 E-value=3.1e-11 Score=147.98 Aligned_cols=165 Identities=24% Similarity=0.410 Sum_probs=118.8
Q ss_pred cccccCccCchHHHHHHHHHHHhccccccccccCcccCCceEEECCCCCchhHHHHHhhhhc----------cccEEEee
Q 003795 414 DVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEA----------GVNFFSIS 483 (795)
Q Consensus 414 ~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el----------~~~~~~is 483 (795)
+-.++.+.|-+.. ++.++..+... -..+++|+||||||||++++.||..+ +.+++.++
T Consensus 174 ~~~l~~vigr~~e---i~~~i~iL~r~---------~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~ 241 (857)
T PRK10865 174 QGKLDPVIGRDEE---IRRTIQVLQRR---------TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALD 241 (857)
T ss_pred cCCCCcCCCCHHH---HHHHHHHHhcC---------CcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEe
Confidence 3456667776654 44444433211 12348999999999999999999977 66788888
Q ss_pred cccee--hhhhccchhhHHhHHHHHHh-cCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcccCCCcEEEE
Q 003795 484 ASQFV--EIYVGVGASRVRSLYQEAKD-NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITI 560 (795)
Q Consensus 484 ~se~~--~~~~g~~~~~l~~lf~~ar~-~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVI 560 (795)
++.+. ..|.|.....++.+|+.+.. ..++|+||||+|.+.+... ++|+.. ..+.|... ..++.+.+|
T Consensus 242 l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~---~~~~~d---~~~~lkp~----l~~g~l~~I 311 (857)
T PRK10865 242 MGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGK---ADGAMD---AGNMLKPA----LARGELHCV 311 (857)
T ss_pred hhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCC---Cccchh---HHHHhcch----hhcCCCeEE
Confidence 88765 34778888889999988644 5678999999999975532 112211 22223222 346789999
Q ss_pred eccCCCC-----CCCccccCCCcccceecCCCCCHHHHHHHHHHHHcc
Q 003795 561 ASTNRPD-----ILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARK 603 (795)
Q Consensus 561 atTN~~d-----~LdpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~ 603 (795)
++|+..+ .+|+++.| ||+ .|.++.|+.+++..|++.....
T Consensus 312 gaTt~~e~r~~~~~d~al~r--Rf~-~i~v~eP~~~~~~~iL~~l~~~ 356 (857)
T PRK10865 312 GATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAILRGLKER 356 (857)
T ss_pred EcCCCHHHHHHhhhcHHHHh--hCC-EEEeCCCCHHHHHHHHHHHhhh
Confidence 9998876 48999999 998 6889999999999999876544
No 121
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.25 E-value=1.7e-10 Score=120.33 Aligned_cols=174 Identities=15% Similarity=0.140 Sum_probs=113.0
Q ss_pred CCceEEECCCCCchhHHHHHhhhhc---cccEEEeeccceehhhhccchhhHHhHHHHHHhcCCceeEhHHHHHHhhhcc
Q 003795 451 PGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERG 527 (795)
Q Consensus 451 ~~giLL~GPpGtGKTtLakaLA~el---~~~~~~is~se~~~~~~g~~~~~l~~lf~~ar~~~p~Il~IDEID~l~~~r~ 527 (795)
..+++|+||+|||||+|++++++.. +..+..+++..+... +.. ...+++++|||++.+...
T Consensus 42 ~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~~------------~~~--~~~~~~liiDdi~~l~~~-- 105 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLLA------------FDF--DPEAELYAVDDVERLDDA-- 105 (227)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHHH------------Hhh--cccCCEEEEeChhhcCch--
Confidence 3459999999999999999999865 557777777653221 111 224568999999876322
Q ss_pred CCCCCCcchHHHHHHHHHHhhhcccCCCcE-EEEeccCCCC--CCCccccCCCcc--cceecCCCCCHHHHHHHHHHHHc
Q 003795 528 LIKGSGGQERDATLNQLLVCLDGFEGRGNV-ITIASTNRPD--ILDPALVRPGRF--DRKIFIPKPGLIGRMEILKVHAR 602 (795)
Q Consensus 528 ~~~~Sgge~~r~~l~~LL~~ld~~~~~~~V-lVIatTN~~d--~LdpaLlrpgRF--d~~I~~~~Pd~~eR~~Il~~~l~ 602 (795)
....|+..++........ ++++++..+. .+.+.+.+ || ...+.+++|+..++..++.....
T Consensus 106 ------------~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~s--r~~~~~~i~l~pl~~~~~~~~l~~~~~ 171 (227)
T PRK08903 106 ------------QQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRT--RLGWGLVYELKPLSDADKIAALKAAAA 171 (227)
T ss_pred ------------HHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHH--HHhcCeEEEecCCCHHHHHHHHHHHHH
Confidence 223344444433334443 4444443321 24566666 66 56899999999999999887665
Q ss_pred cCCCC-ChhhHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Q 003795 603 KKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQ 656 (795)
Q Consensus 603 ~~~~~-~d~dl~~LA~~t~G~sgadL~~lv~~A~~~A~~~~~~~It~edl~~Al~ 656 (795)
...+. ++.-+..|+.. .+-+.+++.++++.-...+.. .+..||...+.+++.
T Consensus 172 ~~~v~l~~~al~~L~~~-~~gn~~~l~~~l~~l~~~~~~-~~~~i~~~~~~~~l~ 224 (227)
T PRK08903 172 ERGLQLADEVPDYLLTH-FRRDMPSLMALLDALDRYSLE-QKRPVTLPLLREMLA 224 (227)
T ss_pred HcCCCCCHHHHHHHHHh-ccCCHHHHHHHHHHHHHHHHH-hCCCCCHHHHHHHHh
Confidence 44333 33346667774 445788888888875544433 446799999888764
No 122
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.25 E-value=9.7e-11 Score=140.39 Aligned_cols=206 Identities=24% Similarity=0.302 Sum_probs=131.8
Q ss_pred ccccccCccCchHHHHHHHHHHHhccccccccccCcccCCceEEECCCCCchhHHHHHhhhhccccEEEeeccceehhhh
Q 003795 413 VDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYV 492 (795)
Q Consensus 413 ~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~se~~~~~~ 492 (795)
.+..|++..|.+..+....-+...+.. .-..+++|+|||||||||+|+++++..+..++.+++...
T Consensus 23 RP~tldd~vGQe~ii~~~~~L~~~i~~---------~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~----- 88 (725)
T PRK13341 23 RPRTLEEFVGQDHILGEGRLLRRAIKA---------DRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLA----- 88 (725)
T ss_pred CCCcHHHhcCcHHHhhhhHHHHHHHhc---------CCCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhh-----
Confidence 457788888877665432222222211 112358999999999999999999999888887776421
Q ss_pred ccchhhHHhHHHHHH-----hcCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcccCCCcEEEEecc--CC
Q 003795 493 GVGASRVRSLYQEAK-----DNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIAST--NR 565 (795)
Q Consensus 493 g~~~~~l~~lf~~ar-----~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVIatT--N~ 565 (795)
+...++..+..+. .....++||||+|.+... ..+.|+..++ .+.+++|++| |.
T Consensus 89 --~i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~--------------qQdaLL~~lE----~g~IiLI~aTTenp 148 (725)
T PRK13341 89 --GVKDLRAEVDRAKERLERHGKRTILFIDEVHRFNKA--------------QQDALLPWVE----NGTITLIGATTENP 148 (725)
T ss_pred --hhHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHH--------------HHHHHHHHhc----CceEEEEEecCCCh
Confidence 1112233333331 123569999999988543 4455665554 3457777655 44
Q ss_pred CCCCCccccCCCcccceecCCCCCHHHHHHHHHHHHcc-------CCC-CChhhHHHHHhhCCCCcHHHHHHHHHHHHHH
Q 003795 566 PDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARK-------KPM-ADDVDYLAVASMTDGMVGAELANIVEVAAIN 637 (795)
Q Consensus 566 ~d~LdpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~-------~~~-~~d~dl~~LA~~t~G~sgadL~~lv~~A~~~ 637 (795)
...+++++++ |. ..+.|++++.+++..+++..+.. ..+ .++..+..|+..+.| ..+.+.++++.++..
T Consensus 149 ~~~l~~aL~S--R~-~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~G-D~R~lln~Le~a~~~ 224 (725)
T PRK13341 149 YFEVNKALVS--RS-RLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANG-DARSLLNALELAVES 224 (725)
T ss_pred HhhhhhHhhc--cc-cceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCC-CHHHHHHHHHHHHHh
Confidence 4568899998 54 37899999999999999988762 111 233446778887754 567777777776643
Q ss_pred HHHcCC--CccCHHHHHHHHH
Q 003795 638 MMRDGR--TEITTDDLLQAAQ 656 (795)
Q Consensus 638 A~~~~~--~~It~edl~~Al~ 656 (795)
+...+. ..|+.+++.+++.
T Consensus 225 ~~~~~~~~i~It~~~~~e~l~ 245 (725)
T PRK13341 225 TPPDEDGLIDITLAIAEESIQ 245 (725)
T ss_pred cccCCCCceeccHHHHHHHHH
Confidence 322222 2378888877765
No 123
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.24 E-value=1.6e-10 Score=122.31 Aligned_cols=186 Identities=22% Similarity=0.243 Sum_probs=127.3
Q ss_pred ccccCccccccCccCchHHHHHHHHHHHhccccccccccCcccCCceEEECCCCCchhHHHHHhhhhcccc------EEE
Q 003795 408 YLERGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVN------FFS 481 (795)
Q Consensus 408 ~~~~~~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el~~~------~~~ 481 (795)
+.++..+..|+++.|.+.++..+.+.+.. . .-..+|||||||||||+.++++|.++..+ +..
T Consensus 26 wteKYrPkt~de~~gQe~vV~~L~~a~~~-~-----------~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~ 93 (346)
T KOG0989|consen 26 WTEKYRPKTFDELAGQEHVVQVLKNALLR-R-----------ILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLE 93 (346)
T ss_pred hHHHhCCCcHHhhcchHHHHHHHHHHHhh-c-----------CCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhh
Confidence 34567788999999999888888877654 1 11237999999999999999999988652 112
Q ss_pred eeccceehhhhccchhhHHhHHHHHHhc----------CCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcc
Q 003795 482 ISASQFVEIYVGVGASRVRSLYQEAKDN----------APSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGF 551 (795)
Q Consensus 482 is~se~~~~~~g~~~~~l~~lf~~ar~~----------~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~ 551 (795)
.+.++.....+ ...++ .-|...... ++.|++|||.|.+..+ .++.|...|+.+
T Consensus 94 lnaSderGisv--vr~Ki-k~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsd--------------aq~aLrr~mE~~ 156 (346)
T KOG0989|consen 94 LNASDERGISV--VREKI-KNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSD--------------AQAALRRTMEDF 156 (346)
T ss_pred hcccccccccc--hhhhh-cCHHHHhhccccccCCCCCcceEEEEechhhhhHH--------------HHHHHHHHHhcc
Confidence 23333222211 11111 122222211 1258999999999765 788999999953
Q ss_pred cCCCcEEEEeccCCCCCCCccccCCCcccceecCCCCCHHHHHHHHHHHHccCCCC-ChhhHHHHHhhCCCCcHHHH
Q 003795 552 EGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAEL 627 (795)
Q Consensus 552 ~~~~~VlVIatTN~~d~LdpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~~~~-~d~dl~~LA~~t~G~sgadL 627 (795)
..++.+|.-||.++.|++.+.+ |.. .+.|++...+.....|+....+..+. ++-.+..++..+.|--.+.+
T Consensus 157 --s~~trFiLIcnylsrii~pi~S--RC~-KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~GdLR~Ai 228 (346)
T KOG0989|consen 157 --SRTTRFILICNYLSRIIRPLVS--RCQ-KFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDGDLRRAI 228 (346)
T ss_pred --ccceEEEEEcCChhhCChHHHh--hHH-HhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHH
Confidence 4567888889999999999998 765 67788888877788888777665554 33347778888776444433
No 124
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.24 E-value=7.4e-11 Score=144.98 Aligned_cols=201 Identities=22% Similarity=0.364 Sum_probs=136.3
Q ss_pred cccccCccCchHHHHHHHHHHHhccccccccccCcccCCceEEECCCCCchhHHHHHhhhhc----------cccEEEee
Q 003795 414 DVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEA----------GVNFFSIS 483 (795)
Q Consensus 414 ~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el----------~~~~~~is 483 (795)
+-.++.+.|-++.+ +.++..+.. +...+++|+||||||||++++.||..+ +.+++.++
T Consensus 169 ~~~~~~~igr~~ei---~~~~~~l~r---------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~ 236 (852)
T TIGR03346 169 EGKLDPVIGRDEEI---RRTIQVLSR---------RTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALD 236 (852)
T ss_pred CCCCCcCCCcHHHH---HHHHHHHhc---------CCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEee
Confidence 34556666766543 444443321 122347999999999999999999875 56778888
Q ss_pred cccee--hhhhccchhhHHhHHHHHHhc-CCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcccCCCcEEEE
Q 003795 484 ASQFV--EIYVGVGASRVRSLYQEAKDN-APSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITI 560 (795)
Q Consensus 484 ~se~~--~~~~g~~~~~l~~lf~~ar~~-~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVI 560 (795)
++.+. ..|.|.....++.++..+... .++|+||||++.+.+... +.|. ....+.|... ..++.+.+|
T Consensus 237 ~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~----~~~~--~d~~~~Lk~~----l~~g~i~~I 306 (852)
T TIGR03346 237 MGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGK----AEGA--MDAGNMLKPA----LARGELHCI 306 (852)
T ss_pred HHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCC----Ccch--hHHHHHhchh----hhcCceEEE
Confidence 77764 357787778888999888653 588999999999975421 1111 1123333322 346789999
Q ss_pred eccCCCC-----CCCccccCCCcccceecCCCCCHHHHHHHHHHHHccCCCC-----ChhhHHHHHhhCCCC-----cHH
Q 003795 561 ASTNRPD-----ILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-----DDVDYLAVASMTDGM-----VGA 625 (795)
Q Consensus 561 atTN~~d-----~LdpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~~~~-----~d~dl~~LA~~t~G~-----sga 625 (795)
++||..+ .+|+++.| ||. .|.++.|+.+++..|++......... .+..+...+..+.+| -+.
T Consensus 307 gaTt~~e~r~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi~~r~lPd 383 (852)
T TIGR03346 307 GATTLDEYRKYIEKDAALER--RFQ-PVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYITDRFLPD 383 (852)
T ss_pred EeCcHHHHHHHhhcCHHHHh--cCC-EEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccccccccCCch
Confidence 9998764 47999999 997 68999999999999998765554322 233455555555544 345
Q ss_pred HHHHHHHHHHHHHH
Q 003795 626 ELANIVEVAAINMM 639 (795)
Q Consensus 626 dL~~lv~~A~~~A~ 639 (795)
-...++++|+..+.
T Consensus 384 kAidlld~a~a~~~ 397 (852)
T TIGR03346 384 KAIDLIDEAAARIR 397 (852)
T ss_pred HHHHHHHHHHHHHH
Confidence 55678888876543
No 125
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.23 E-value=1.2e-10 Score=129.75 Aligned_cols=185 Identities=21% Similarity=0.291 Sum_probs=126.5
Q ss_pred eEEECCCCCchhHHHHHhhhhc---c--ccEEEeeccceehhhhccchhhHHhHHHHHHhcCCceeEhHHHHHHhhhccC
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEA---G--VNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGL 528 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el---~--~~~~~is~se~~~~~~g~~~~~l~~lf~~ar~~~p~Il~IDEID~l~~~r~~ 528 (795)
++|+||.|+|||+|++++++.. + ..+++++...|...++.....+-..-|.... .-++++||+|+.+.++.
T Consensus 116 lfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~gk~-- 191 (408)
T COG0593 116 LFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAGKE-- 191 (408)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcCCh--
Confidence 8999999999999999999865 2 3577777777766655433332223344433 45689999999986542
Q ss_pred CCCCCcchHHHHHHHHHHhhhcccCCCcEEEEeccCCCCCC---CccccCCCccc--ceecCCCCCHHHHHHHHHHHHcc
Q 003795 529 IKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDIL---DPALVRPGRFD--RKIFIPKPGLIGRMEILKVHARK 603 (795)
Q Consensus 529 ~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVIatTN~~d~L---dpaLlrpgRFd--~~I~~~~Pd~~eR~~Il~~~l~~ 603 (795)
. +...|...+..+...++.+|+.+...|..+ .|.|.+ ||. .++.+.+|+.+.|..|++..+..
T Consensus 192 -------~---~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~S--R~~~Gl~~~I~~Pd~e~r~aiL~kka~~ 259 (408)
T COG0593 192 -------R---TQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRS--RLEWGLVVEIEPPDDETRLAILRKKAED 259 (408)
T ss_pred -------h---HHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHH--HHhceeEEeeCCCCHHHHHHHHHHHHHh
Confidence 1 233333333433455567777777777654 578888 775 57788999999999999987766
Q ss_pred CCCC-ChhhHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Q 003795 604 KPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQ 656 (795)
Q Consensus 604 ~~~~-~d~dl~~LA~~t~G~sgadL~~lv~~A~~~A~~~~~~~It~edl~~Al~ 656 (795)
.++. ++.-...+|.+.. -+.++|..+++.....+...++ .||.+.+.+++.
T Consensus 260 ~~~~i~~ev~~~la~~~~-~nvReLegaL~~l~~~a~~~~~-~iTi~~v~e~L~ 311 (408)
T COG0593 260 RGIEIPDEVLEFLAKRLD-RNVRELEGALNRLDAFALFTKR-AITIDLVKEILK 311 (408)
T ss_pred cCCCCCHHHHHHHHHHhh-ccHHHHHHHHHHHHHHHHhcCc-cCcHHHHHHHHH
Confidence 5544 3333555666554 5778888888887766665554 577777777665
No 126
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.23 E-value=1.1e-10 Score=122.71 Aligned_cols=177 Identities=15% Similarity=0.136 Sum_probs=112.2
Q ss_pred ceEEECCCCCchhHHHHHhhhhcc---ccEEEeeccceehhhhccchhhHHhHHHHHHhcCCceeEhHHHHHHhhhccCC
Q 003795 453 GILLCGPPGVGKTLLAKAVAGEAG---VNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLI 529 (795)
Q Consensus 453 giLL~GPpGtGKTtLakaLA~el~---~~~~~is~se~~~~~~g~~~~~l~~lf~~ar~~~p~Il~IDEID~l~~~r~~~ 529 (795)
.++|+||+|||||+|++++++.+. ....+++....... ...+.+.... ..+++|||++.+.++
T Consensus 47 ~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~~--------~~~~~~~~~~--~dlliiDdi~~~~~~---- 112 (235)
T PRK08084 47 YIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAWF--------VPEVLEGMEQ--LSLVCIDNIECIAGD---- 112 (235)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhhh--------hHHHHHHhhh--CCEEEEeChhhhcCC----
Confidence 589999999999999999998653 33455555432111 1122222222 358999999987432
Q ss_pred CCCCcchHHHHHHHHHHhhhcccCCCc-EEEEeccCCCCC---CCccccCCCccc--ceecCCCCCHHHHHHHHHHHHcc
Q 003795 530 KGSGGQERDATLNQLLVCLDGFEGRGN-VITIASTNRPDI---LDPALVRPGRFD--RKIFIPKPGLIGRMEILKVHARK 603 (795)
Q Consensus 530 ~~Sgge~~r~~l~~LL~~ld~~~~~~~-VlVIatTN~~d~---LdpaLlrpgRFd--~~I~~~~Pd~~eR~~Il~~~l~~ 603 (795)
......+-.++..+ ...++ .+++.+++.|.. +.|.|++ |+. .++.+.+|+.+++.++++.++..
T Consensus 113 -----~~~~~~lf~l~n~~---~e~g~~~li~ts~~~p~~l~~~~~~L~S--Rl~~g~~~~l~~~~~~~~~~~l~~~a~~ 182 (235)
T PRK08084 113 -----ELWEMAIFDLYNRI---LESGRTRLLITGDRPPRQLNLGLPDLAS--RLDWGQIYKLQPLSDEEKLQALQLRARL 182 (235)
T ss_pred -----HHHHHHHHHHHHHH---HHcCCCeEEEeCCCChHHcCcccHHHHH--HHhCCceeeecCCCHHHHHHHHHHHHHH
Confidence 11222232233222 22333 455666666655 5789988 774 78999999999999999986665
Q ss_pred CCCC-ChhhHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHH
Q 003795 604 KPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAA 655 (795)
Q Consensus 604 ~~~~-~d~dl~~LA~~t~G~sgadL~~lv~~A~~~A~~~~~~~It~edl~~Al 655 (795)
..+. ++.-+..|+.+..| +.+.+.++++.....+. ..+..||.+.+.+++
T Consensus 183 ~~~~l~~~v~~~L~~~~~~-d~r~l~~~l~~l~~~~l-~~~~~it~~~~k~~l 233 (235)
T PRK08084 183 RGFELPEDVGRFLLKRLDR-EMRTLFMTLDQLDRASI-TAQRKLTIPFVKEIL 233 (235)
T ss_pred cCCCCCHHHHHHHHHhhcC-CHHHHHHHHHHHHHHHH-hcCCCCCHHHHHHHH
Confidence 4333 33446777877764 66777777776543333 334459998888775
No 127
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.22 E-value=6.5e-11 Score=145.08 Aligned_cols=199 Identities=24% Similarity=0.365 Sum_probs=135.7
Q ss_pred ccccCccCchHHHHHHHHHHHhccccccccccCcccCCceEEECCCCCchhHHHHHhhhhc----------cccEEEeec
Q 003795 415 VKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEA----------GVNFFSISA 484 (795)
Q Consensus 415 ~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el----------~~~~~~is~ 484 (795)
-.++.+.|-++.+..+.++.. .+.+.+++|+||||||||++++.||... +..++.+++
T Consensus 176 ~~~~~~igr~~ei~~~~~~L~------------r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~ 243 (821)
T CHL00095 176 GNLDPVIGREKEIERVIQILG------------RRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDI 243 (821)
T ss_pred CCCCCCCCcHHHHHHHHHHHc------------ccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeH
Confidence 345566666665544444322 2234568999999999999999999875 367888988
Q ss_pred ccee--hhhhccchhhHHhHHHHHHhcCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcccCCCcEEEEec
Q 003795 485 SQFV--EIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIAS 562 (795)
Q Consensus 485 se~~--~~~~g~~~~~l~~lf~~ar~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVIat 562 (795)
+.+. ..|.|+.+..++.+++.+....++|+||||||.+.+.... .|+.. ..+.|...+ .++.+.+|++
T Consensus 244 ~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~---~g~~~---~a~lLkp~l----~rg~l~~Iga 313 (821)
T CHL00095 244 GLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAA---EGAID---AANILKPAL----ARGELQCIGA 313 (821)
T ss_pred HHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCC---CCccc---HHHHhHHHH----hCCCcEEEEe
Confidence 8765 3578888888999999998878899999999999764321 11111 222222222 3677899998
Q ss_pred cCCCC-----CCCccccCCCcccceecCCCCCHHHHHHHHHHHHcc----CCC-CChhhHHHHHhhCCCCc-----HHHH
Q 003795 563 TNRPD-----ILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARK----KPM-ADDVDYLAVASMTDGMV-----GAEL 627 (795)
Q Consensus 563 TN~~d-----~LdpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~----~~~-~~d~dl~~LA~~t~G~s-----gadL 627 (795)
|+..+ ..||+|.+ ||. .|.++.|+.++...|++..... ..+ .++..+..++..+.+|. ++..
T Consensus 314 Tt~~ey~~~ie~D~aL~r--Rf~-~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~~r~lPdka 390 (821)
T CHL00095 314 TTLDEYRKHIEKDPALER--RFQ-PVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIADRFLPDKA 390 (821)
T ss_pred CCHHHHHHHHhcCHHHHh--cce-EEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCccccCchHH
Confidence 88764 47899999 997 5899999999999998754321 111 23334566666666553 3445
Q ss_pred HHHHHHHHHHH
Q 003795 628 ANIVEVAAINM 638 (795)
Q Consensus 628 ~~lv~~A~~~A 638 (795)
..++++|+...
T Consensus 391 idlld~a~a~~ 401 (821)
T CHL00095 391 IDLLDEAGSRV 401 (821)
T ss_pred HHHHHHHHHHH
Confidence 57777776544
No 128
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.22 E-value=2.1e-10 Score=135.32 Aligned_cols=186 Identities=20% Similarity=0.233 Sum_probs=118.6
Q ss_pred eEEECCCCCchhHHHHHhhhhc----------cccEEEeeccceehhh---------h-cc-------chhhHHhHHHHH
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEA----------GVNFFSISASQFVEIY---------V-GV-------GASRVRSLYQEA 506 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el----------~~~~~~is~se~~~~~---------~-g~-------~~~~l~~lf~~a 506 (795)
++|+|+||||||++++.+..++ ...+++|+|..+...+ + +. ....+..+|...
T Consensus 784 LYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L 863 (1164)
T PTZ00112 784 LYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQN 863 (1164)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhh
Confidence 5699999999999999998765 2557888886544331 0 11 112234455544
Q ss_pred H--hcCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcccCCCcEEEEeccCC---CCCCCccccCCCcccc
Q 003795 507 K--DNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNR---PDILDPALVRPGRFDR 581 (795)
Q Consensus 507 r--~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVIatTN~---~d~LdpaLlrpgRFd~ 581 (795)
. .....||+|||||.+.... ..+|..|+.... .....++||+.+|. ++.++|.+.+ ||..
T Consensus 864 ~k~~r~v~IIILDEID~L~kK~-----------QDVLYnLFR~~~--~s~SKLiLIGISNdlDLperLdPRLRS--RLg~ 928 (1164)
T PTZ00112 864 KKDNRNVSILIIDEIDYLITKT-----------QKVLFTLFDWPT--KINSKLVLIAISNTMDLPERLIPRCRS--RLAF 928 (1164)
T ss_pred hcccccceEEEeehHhhhCccH-----------HHHHHHHHHHhh--ccCCeEEEEEecCchhcchhhhhhhhh--cccc
Confidence 2 2335689999999986431 224444444332 23467889999986 4457788877 5543
Q ss_pred -eecCCCCCHHHHHHHHHHHHccC-CCCChhhHHHHHhh---CCCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Q 003795 582 -KIFIPKPGLIGRMEILKVHARKK-PMADDVDYLAVASM---TDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQ 656 (795)
Q Consensus 582 -~I~~~~Pd~~eR~~Il~~~l~~~-~~~~d~dl~~LA~~---t~G~sgadL~~lv~~A~~~A~~~~~~~It~edl~~Al~ 656 (795)
.|.|++++.+++.+||+..+... ...++..+..+|+. ..|-.+.. ..+|+.|+.. .+...|+.+|+..|+.
T Consensus 929 eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKA-LDILRrAgEi---kegskVT~eHVrkAle 1004 (1164)
T PTZ00112 929 GRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKA-LQICRKAFEN---KRGQKIVPRDITEATN 1004 (1164)
T ss_pred ccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHH-HHHHHHHHhh---cCCCccCHHHHHHHHH
Confidence 58899999999999999888753 22233335556653 33333333 3566666643 2345799999999986
Q ss_pred HH
Q 003795 657 IE 658 (795)
Q Consensus 657 ~~ 658 (795)
..
T Consensus 1005 ei 1006 (1164)
T PTZ00112 1005 QL 1006 (1164)
T ss_pred HH
Confidence 33
No 129
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.21 E-value=1.2e-10 Score=134.60 Aligned_cols=203 Identities=20% Similarity=0.242 Sum_probs=141.0
Q ss_pred cCccccccCccCchHHHHHHHHHHHhccccccccccCcccCCceEEECCCCCchhHHHHHhhhhcccc------------
Q 003795 411 RGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVN------------ 478 (795)
Q Consensus 411 ~~~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el~~~------------ 478 (795)
+.++..|+++.|.+.++..+...+.. -+++..+||+||+|+|||++|+++|..+...
T Consensus 7 KyRP~~fdeiiGqe~v~~~L~~~I~~-----------grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~ 75 (535)
T PRK08451 7 KYRPKHFDELIGQESVSKTLSLALDN-----------NRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCI 75 (535)
T ss_pred HHCCCCHHHccCcHHHHHHHHHHHHc-----------CCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccH
Confidence 44678899999999888777776642 1356668999999999999999999876321
Q ss_pred ------------EEEeeccceehhhhccchhhHHhHHHHHHhc----CCceeEhHHHHHHhhhccCCCCCCcchHHHHHH
Q 003795 479 ------------FFSISASQFVEIYVGVGASRVRSLYQEAKDN----APSVVFIDELDAVGRERGLIKGSGGQERDATLN 542 (795)
Q Consensus 479 ------------~~~is~se~~~~~~g~~~~~l~~lf~~ar~~----~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~ 542 (795)
++.++.+. ..+...++.+.+..... ...|++|||+|.+... .++
T Consensus 76 ~C~~~~~~~h~dv~eldaas------~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~--------------A~N 135 (535)
T PRK08451 76 QCQSALENRHIDIIEMDAAS------NRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKE--------------AFN 135 (535)
T ss_pred HHHHHhhcCCCeEEEecccc------ccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHH--------------HHH
Confidence 11121110 01123455555543322 2358999999888544 788
Q ss_pred HHHHhhhcccCCCcEEEEeccCCCCCCCccccCCCcccceecCCCCCHHHHHHHHHHHHccCCCC-ChhhHHHHHhhCCC
Q 003795 543 QLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDG 621 (795)
Q Consensus 543 ~LL~~ld~~~~~~~VlVIatTN~~d~LdpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~~~~-~d~dl~~LA~~t~G 621 (795)
.|+..|+. ...++.+|.+|+.+..+.+++++ |. ..++|.+++.++....++..+...+.. ++..+..++..+.|
T Consensus 136 ALLK~LEE--pp~~t~FIL~ttd~~kL~~tI~S--Rc-~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~G 210 (535)
T PRK08451 136 ALLKTLEE--PPSYVKFILATTDPLKLPATILS--RT-QHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNG 210 (535)
T ss_pred HHHHHHhh--cCCceEEEEEECChhhCchHHHh--hc-eeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 99999984 45567777777888999999998 64 488999999999888888777665443 33456677777765
Q ss_pred CcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHH
Q 003795 622 MVGAELANIVEVAAINMMRDGRTEITTDDLLQA 654 (795)
Q Consensus 622 ~sgadL~~lv~~A~~~A~~~~~~~It~edl~~A 654 (795)
+.+++.+++..+...+ ...||.+++...
T Consensus 211 -dlR~alnlLdqai~~~----~~~It~~~V~~~ 238 (535)
T PRK08451 211 -SLRDTLTLLDQAIIYC----KNAITESKVADM 238 (535)
T ss_pred -cHHHHHHHHHHHHHhc----CCCCCHHHHHHH
Confidence 7777778887766433 334677766654
No 130
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.21 E-value=1.7e-10 Score=130.43 Aligned_cols=214 Identities=17% Similarity=0.211 Sum_probs=138.8
Q ss_pred cCccccccCccCchHHHHHHHHHHHhccccccccccCcccCCceEEECCCCCchhHHHHHhhhhccccEEE---------
Q 003795 411 RGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFS--------- 481 (795)
Q Consensus 411 ~~~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~--------- 481 (795)
+..+..|+++.|.+..+..+...+. +-+++.+++|+||+|+||||+|+++|..+...-..
T Consensus 9 k~RP~~~~eiiGq~~~~~~L~~~~~-----------~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~ 77 (397)
T PRK14955 9 KYRPKKFADITAQEHITRTIQNSLR-----------MGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEV 77 (397)
T ss_pred hcCCCcHhhccChHHHHHHHHHHHH-----------hCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccC
Confidence 3467789999998888776666554 12456679999999999999999999987542100
Q ss_pred -eeccce------e-----h--hhhc---cchhhHHhHHHHHHh----cCCceeEhHHHHHHhhhccCCCCCCcchHHHH
Q 003795 482 -ISASQF------V-----E--IYVG---VGASRVRSLYQEAKD----NAPSVVFIDELDAVGRERGLIKGSGGQERDAT 540 (795)
Q Consensus 482 -is~se~------~-----~--~~~g---~~~~~l~~lf~~ar~----~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~ 540 (795)
-.|+.. . + .+.+ .+...++.+.+.+.. ....+++|||++.+... .
T Consensus 78 ~~~c~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~--------------~ 143 (397)
T PRK14955 78 TEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIA--------------A 143 (397)
T ss_pred CCCCCCCHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHH--------------H
Confidence 011100 0 0 0111 112344555554432 22358999999988543 5
Q ss_pred HHHHHHhhhcccCCCcEEEEeccCCCCCCCccccCCCcccceecCCCCCHHHHHHHHHHHHccCCC-CChhhHHHHHhhC
Q 003795 541 LNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPM-ADDVDYLAVASMT 619 (795)
Q Consensus 541 l~~LL~~ld~~~~~~~VlVIatTN~~d~LdpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~~~-~~d~dl~~LA~~t 619 (795)
++.|+..++ .....+++|.+|+.+..+.+++.+ |.. .+.|.+++.++....+...++.... .++..+..++..+
T Consensus 144 ~~~LLk~LE--ep~~~t~~Il~t~~~~kl~~tl~s--R~~-~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l~~~s 218 (397)
T PRK14955 144 FNAFLKTLE--EPPPHAIFIFATTELHKIPATIAS--RCQ-RFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIGRKA 218 (397)
T ss_pred HHHHHHHHh--cCCCCeEEEEEeCChHHhHHHHHH--HHH-HhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 677888887 344456666666667788888887 654 7899999999988888877765443 3344567777777
Q ss_pred CCCcHHHHHHHHHHHHHHHHH-cCCCccCHHHHHHHH
Q 003795 620 DGMVGAELANIVEVAAINMMR-DGRTEITTDDLLQAA 655 (795)
Q Consensus 620 ~G~sgadL~~lv~~A~~~A~~-~~~~~It~edl~~Al 655 (795)
.| +.+.+.+.++.+...+.. .....|+.+++.+.+
T Consensus 219 ~g-~lr~a~~~L~kl~~~~~~~~~~~~It~~~v~~~v 254 (397)
T PRK14955 219 QG-SMRDAQSILDQVIAFSVESEGEGSIRYDKVAELL 254 (397)
T ss_pred CC-CHHHHHHHHHHHHHhccccCCCCccCHHHHHHHH
Confidence 64 566666666665544321 234578988887765
No 131
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.21 E-value=1.5e-10 Score=135.44 Aligned_cols=209 Identities=19% Similarity=0.218 Sum_probs=142.8
Q ss_pred CccccccCccCchHHHHHHHHHHHhccccccccccCcccCCceEEECCCCCchhHHHHHhhhhcccc-------EEEe-e
Q 003795 412 GVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVN-------FFSI-S 483 (795)
Q Consensus 412 ~~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el~~~-------~~~i-s 483 (795)
..+..|+++.|.+..+..+...+.. -+++..++|+||+|+|||++|+++|..+... .+.+ +
T Consensus 10 yRP~~f~diiGqe~iv~~L~~~i~~-----------~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~ 78 (563)
T PRK06647 10 RRPRDFNSLEGQDFVVETLKHSIES-----------NKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSS 78 (563)
T ss_pred hCCCCHHHccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchH
Confidence 4678899999999988877776652 1345668999999999999999999987542 1110 0
Q ss_pred c-----c---ceehhhhc---cchhhHHhHHHHHHh----cCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhh
Q 003795 484 A-----S---QFVEIYVG---VGASRVRSLYQEAKD----NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCL 548 (795)
Q Consensus 484 ~-----s---e~~~~~~g---~~~~~l~~lf~~ar~----~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~l 548 (795)
| + ++.. +-| .....++.+.+.+.. ..+.+++|||++.+... .++.|+..+
T Consensus 79 C~~i~~~~~~dv~~-idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~--------------a~naLLK~L 143 (563)
T PRK06647 79 CKSIDNDNSLDVIE-IDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNS--------------AFNALLKTI 143 (563)
T ss_pred HHHHHcCCCCCeEE-ecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHH--------------HHHHHHHhh
Confidence 0 0 0000 011 112334455444332 33569999999988543 688899888
Q ss_pred hcccCCCcEEEEeccCCCCCCCccccCCCcccceecCCCCCHHHHHHHHHHHHccCCCC-ChhhHHHHHhhCCCCcHHHH
Q 003795 549 DGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAEL 627 (795)
Q Consensus 549 d~~~~~~~VlVIatTN~~d~LdpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~~~~-~d~dl~~LA~~t~G~sgadL 627 (795)
+ ....++++|.+|+.+..+.+++++ |+. .+.|.+++.++....++..+...... ++..+..++..+.| +.+++
T Consensus 144 E--epp~~~vfI~~tte~~kL~~tI~S--Rc~-~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~G-dlR~a 217 (563)
T PRK06647 144 E--EPPPYIVFIFATTEVHKLPATIKS--RCQ-HFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTG-SVRDA 217 (563)
T ss_pred c--cCCCCEEEEEecCChHHhHHHHHH--hce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHH
Confidence 8 455678888777878889999988 665 68899999999999888777555433 34456677877765 67777
Q ss_pred HHHHHHHHHHHHHcCCCccCHHHHHHHHH
Q 003795 628 ANIVEVAAINMMRDGRTEITTDDLLQAAQ 656 (795)
Q Consensus 628 ~~lv~~A~~~A~~~~~~~It~edl~~Al~ 656 (795)
.++++.+... +...++.+++..++.
T Consensus 218 lslLdklis~----~~~~It~e~V~~llg 242 (563)
T PRK06647 218 YTLFDQVVSF----SDSDITLEQIRSKMG 242 (563)
T ss_pred HHHHHHHHhh----cCCCCCHHHHHHHhC
Confidence 7777766533 224588888887653
No 132
>PRK05642 DNA replication initiation factor; Validated
Probab=99.21 E-value=2.1e-10 Score=120.52 Aligned_cols=178 Identities=16% Similarity=0.200 Sum_probs=118.3
Q ss_pred CceEEECCCCCchhHHHHHhhhhc---cccEEEeeccceehhhhccchhhHHhHHHHHHhcCCceeEhHHHHHHhhhccC
Q 003795 452 GGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGL 528 (795)
Q Consensus 452 ~giLL~GPpGtGKTtLakaLA~el---~~~~~~is~se~~~~~~g~~~~~l~~lf~~ar~~~p~Il~IDEID~l~~~r~~ 528 (795)
..++|+||+|+|||+|++++++++ +..+++++..++.... ..+.+.... .++++||+++.+.+..
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~~--------~~~~~~~~~--~d~LiiDDi~~~~~~~-- 113 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRG--------PELLDNLEQ--YELVCLDDLDVIAGKA-- 113 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhhh--------HHHHHhhhh--CCEEEEechhhhcCCh--
Confidence 458999999999999999998754 4567777776654321 123333332 3589999998774321
Q ss_pred CCCCCcchHHHHHHHHHHhhhcccCCCcEEEEeccCCCCC---CCccccCCCcc--cceecCCCCCHHHHHHHHHHHHcc
Q 003795 529 IKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDI---LDPALVRPGRF--DRKIFIPKPGLIGRMEILKVHARK 603 (795)
Q Consensus 529 ~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVIatTN~~d~---LdpaLlrpgRF--d~~I~~~~Pd~~eR~~Il~~~l~~ 603 (795)
. ....|+..++....++..++|+++..|.. ..|.|.+ || ..++.+.+|+.+++..+++..+..
T Consensus 114 -------~---~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~S--Rl~~gl~~~l~~~~~e~~~~il~~ka~~ 181 (234)
T PRK05642 114 -------D---WEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKS--RLTLALVFQMRGLSDEDKLRALQLRASR 181 (234)
T ss_pred -------H---HHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHH--HHhcCeeeecCCCCHHHHHHHHHHHHHH
Confidence 1 22334444444445556777777766543 3688888 77 467888999999999999966655
Q ss_pred CCC-CChhhHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHH
Q 003795 604 KPM-ADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAA 655 (795)
Q Consensus 604 ~~~-~~d~dl~~LA~~t~G~sgadL~~lv~~A~~~A~~~~~~~It~edl~~Al 655 (795)
..+ .++.-+..++.+.. -+.+.+.++++.-...+.. .+..||..-+.+++
T Consensus 182 ~~~~l~~ev~~~L~~~~~-~d~r~l~~~l~~l~~~~l~-~~~~it~~~~~~~L 232 (234)
T PRK05642 182 RGLHLTDEVGHFILTRGT-RSMSALFDLLERLDQASLQ-AQRKLTIPFLKETL 232 (234)
T ss_pred cCCCCCHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHH-cCCcCCHHHHHHHh
Confidence 433 23444666777765 4677777877766543433 33558988887765
No 133
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.21 E-value=1.1e-10 Score=124.67 Aligned_cols=179 Identities=22% Similarity=0.253 Sum_probs=111.8
Q ss_pred ceEEECCCCCchhHHHHHhhhhccccEEEeeccceeh--hhhcc----chhhH---------------------HhHHHH
Q 003795 453 GILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVE--IYVGV----GASRV---------------------RSLYQE 505 (795)
Q Consensus 453 giLL~GPpGtGKTtLakaLA~el~~~~~~is~se~~~--~~~g~----~~~~l---------------------~~lf~~ 505 (795)
.++|.||||||||++|++||..++.+++.+++..-.. ..+|. ....+ ..++..
T Consensus 23 ~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~A 102 (262)
T TIGR02640 23 PVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLTLA 102 (262)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHHHH
Confidence 4899999999999999999999999999998765322 11221 11100 012222
Q ss_pred HHhcCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhccc--------------CCCcEEEEeccCCCC----
Q 003795 506 AKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE--------------GRGNVITIASTNRPD---- 567 (795)
Q Consensus 506 ar~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~--------------~~~~VlVIatTN~~d---- 567 (795)
++ .+.+++||||+.+.+. +.+.|+..++... ...++.||+|+|...
T Consensus 103 ~~--~g~~lllDEi~r~~~~--------------~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~ 166 (262)
T TIGR02640 103 VR--EGFTLVYDEFTRSKPE--------------TNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGV 166 (262)
T ss_pred HH--cCCEEEEcchhhCCHH--------------HHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccce
Confidence 22 2458999999987554 5666666665311 123678999999763
Q ss_pred -CCCccccCCCcccceecCCCCCHHHHHHHHHHHHccCCCCChh--hHHHHHhh---C---CCCcHHHHHHHHHHHHHHH
Q 003795 568 -ILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDV--DYLAVASM---T---DGMVGAELANIVEVAAINM 638 (795)
Q Consensus 568 -~LdpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~~~~~d~--dl~~LA~~---t---~G~sgadL~~lv~~A~~~A 638 (795)
.++++|++ || ..+.++.|+.++..+|+..+.. ..+.. .+..++.. . ...+ ++.++.-+...+
T Consensus 167 ~~l~~aL~~--R~-~~i~i~~P~~~~e~~Il~~~~~---~~~~~~~~iv~~~~~~R~~~~~~~~~---~r~~i~~~~~~~ 237 (262)
T TIGR02640 167 HETQDALLD--RL-ITIFMDYPDIDTETAILRAKTD---VAEDSAATIVRLVREFRASGDEITSG---LRASLMIAEVAT 237 (262)
T ss_pred ecccHHHHh--hc-EEEECCCCCHHHHHHHHHHhhC---CCHHHHHHHHHHHHHHHhhCCccCCc---HHHHHHHHHHHH
Confidence 56888998 88 4889999999999999998762 22211 01111111 1 1122 444444444444
Q ss_pred HHcCCCccCHHHHHHHHH
Q 003795 639 MRDGRTEITTDDLLQAAQ 656 (795)
Q Consensus 639 ~~~~~~~It~edl~~Al~ 656 (795)
....+..++.+||.+...
T Consensus 238 ~~~~~~~~~~~~~~~~~~ 255 (262)
T TIGR02640 238 QQDIPVDVDDEDFVDLCI 255 (262)
T ss_pred HcCCCCCCCcHHHHHHHH
Confidence 445566777777776643
No 134
>PRK08727 hypothetical protein; Validated
Probab=99.20 E-value=1.3e-10 Score=122.02 Aligned_cols=179 Identities=21% Similarity=0.267 Sum_probs=113.1
Q ss_pred ceEEECCCCCchhHHHHHhhhhc---cccEEEeeccceehhhhccchhhHHhHHHHHHhcCCceeEhHHHHHHhhhccCC
Q 003795 453 GILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLI 529 (795)
Q Consensus 453 giLL~GPpGtGKTtLakaLA~el---~~~~~~is~se~~~~~~g~~~~~l~~lf~~ar~~~p~Il~IDEID~l~~~r~~~ 529 (795)
.++|+||+|||||+|+.+++..+ +....++++.++.. .+...++.. ....+++|||++.+....
T Consensus 43 ~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~--------~~~~~~~~l--~~~dlLiIDDi~~l~~~~--- 109 (233)
T PRK08727 43 WLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAAG--------RLRDALEAL--EGRSLVALDGLESIAGQR--- 109 (233)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhh--------hHHHHHHHH--hcCCEEEEeCcccccCCh---
Confidence 38999999999999999998764 45556666554322 122334333 244699999998774321
Q ss_pred CCCCcchHHHHHHHHHHhhhcccCCCcEEEEeccCCCCCC---CccccCCCcc--cceecCCCCCHHHHHHHHHHHHccC
Q 003795 530 KGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDIL---DPALVRPGRF--DRKIFIPKPGLIGRMEILKVHARKK 604 (795)
Q Consensus 530 ~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVIatTN~~d~L---dpaLlrpgRF--d~~I~~~~Pd~~eR~~Il~~~l~~~ 604 (795)
.....+-.++... ...+.-+|+.+.+.|..+ +|.|.+ || ...+.+++|+.+++..|++.++...
T Consensus 110 ------~~~~~lf~l~n~~---~~~~~~vI~ts~~~p~~l~~~~~dL~S--Rl~~~~~~~l~~~~~e~~~~iL~~~a~~~ 178 (233)
T PRK08727 110 ------EDEVALFDFHNRA---RAAGITLLYTARQMPDGLALVLPDLRS--RLAQCIRIGLPVLDDVARAAVLRERAQRR 178 (233)
T ss_pred ------HHHHHHHHHHHHH---HHcCCeEEEECCCChhhhhhhhHHHHH--HHhcCceEEecCCCHHHHHHHHHHHHHHc
Confidence 1111222333332 223333455555566654 688988 76 5678999999999999999876544
Q ss_pred CC-CChhhHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHH
Q 003795 605 PM-ADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQI 657 (795)
Q Consensus 605 ~~-~~d~dl~~LA~~t~G~sgadL~~lv~~A~~~A~~~~~~~It~edl~~Al~~ 657 (795)
.+ .++..+..|+.++.| +.+.+.++++.....+...+ ..||...+.+.+..
T Consensus 179 ~l~l~~e~~~~La~~~~r-d~r~~l~~L~~l~~~~~~~~-~~it~~~~~~~l~~ 230 (233)
T PRK08727 179 GLALDEAAIDWLLTHGER-ELAGLVALLDRLDRESLAAK-RRVTVPFLRRVLEE 230 (233)
T ss_pred CCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHhh
Confidence 33 244457778888764 34444455665544344444 46999999888753
No 135
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.20 E-value=1.3e-10 Score=127.64 Aligned_cols=214 Identities=20% Similarity=0.266 Sum_probs=131.7
Q ss_pred cccccCccCchHHHHHHHHHHHhccccccccccCcccCCceEEECCCCCchhHHHHHhhhhccc-------c--EEEeec
Q 003795 414 DVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGV-------N--FFSISA 484 (795)
Q Consensus 414 ~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el~~-------~--~~~is~ 484 (795)
.+.|.++.|....+..+.-.... .| -+++||.|+||+||||+++++++.+.. + +..+.+
T Consensus 4 ~~~f~~i~Gq~~~~~~l~~~~~~---------~~---~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~~ 71 (334)
T PRK13407 4 PFPFSAIVGQEEMKQAMVLTAID---------PG---IGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPED 71 (334)
T ss_pred CCCHHHhCCHHHHHHHHHHHHhc---------cC---CCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcccC
Confidence 46677888877776554422110 01 135999999999999999999998732 1 111111
Q ss_pred c----------------ceehhhhccchhhH-H-hHHHHH-------------HhcCCceeEhHHHHHHhhhccCCCCCC
Q 003795 485 S----------------QFVEIYVGVGASRV-R-SLYQEA-------------KDNAPSVVFIDELDAVGRERGLIKGSG 533 (795)
Q Consensus 485 s----------------e~~~~~~g~~~~~l-~-~lf~~a-------------r~~~p~Il~IDEID~l~~~r~~~~~Sg 533 (795)
. .+.....+.+...+ . ..++.. .....+++++||++.+...
T Consensus 72 ~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~~~-------- 143 (334)
T PRK13407 72 CPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLEDH-------- 143 (334)
T ss_pred CcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCCHH--------
Confidence 0 01111111111101 0 001111 0112358999999998654
Q ss_pred cchHHHHHHHHHHhhhccc-----------CCCcEEEEeccCCCC-CCCccccCCCcccceecCCCCCH-HHHHHHHHHH
Q 003795 534 GQERDATLNQLLVCLDGFE-----------GRGNVITIASTNRPD-ILDPALVRPGRFDRKIFIPKPGL-IGRMEILKVH 600 (795)
Q Consensus 534 ge~~r~~l~~LL~~ld~~~-----------~~~~VlVIatTN~~d-~LdpaLlrpgRFd~~I~~~~Pd~-~eR~~Il~~~ 600 (795)
++..|+..|+.-. ....+++|+++|..+ .++++++. ||...+.+++|.. ++|.+|++..
T Consensus 144 ------~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLld--RF~~~v~v~~~~~~~e~~~il~~~ 215 (334)
T PRK13407 144 ------IVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLD--RFGLSVEVRSPRDVETRVEVIRRR 215 (334)
T ss_pred ------HHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHHHh
Confidence 6777777775321 235689999999755 58889998 9999999998876 8899999864
Q ss_pred HccCC----C--------------------------CChhh---HHHHHhhCC-CCcHHHHHHHHHHHHHHHHHcCCCcc
Q 003795 601 ARKKP----M--------------------------ADDVD---YLAVASMTD-GMVGAELANIVEVAAINMMRDGRTEI 646 (795)
Q Consensus 601 l~~~~----~--------------------------~~d~d---l~~LA~~t~-G~sgadL~~lv~~A~~~A~~~~~~~I 646 (795)
..... . .++.. +..++..+. .-..++|. +++.|...|...|+..|
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~-l~~aA~a~A~l~Gr~~V 294 (334)
T PRK13407 216 DAYDADHDAFMAKWGAEDMQLRGRILGARARLPQLKTPNTVLHDCAALCIALGSDGLRGELT-LLRAARALAAFEGAEAV 294 (334)
T ss_pred hcccccchhhhccccccccCCHHHHHHHHHhcCCcccCHHHHHHHHHHHHHHCCCCchHHHH-HHHHHHHHHHHcCCCee
Confidence 32110 0 01101 122333333 23567775 99999999999999999
Q ss_pred CHHHHHHHHH
Q 003795 647 TTDDLLQAAQ 656 (795)
Q Consensus 647 t~edl~~Al~ 656 (795)
+.+|+..+..
T Consensus 295 ~~~Di~~~~~ 304 (334)
T PRK13407 295 GRSHLRSVAT 304 (334)
T ss_pred CHHHHHHHHH
Confidence 9999988875
No 136
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.19 E-value=6.9e-11 Score=128.86 Aligned_cols=240 Identities=20% Similarity=0.226 Sum_probs=140.2
Q ss_pred hhhhhhhccccceeeeechhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccch---hhhhhhhhcCchH
Q 003795 308 KDSTVATGLGIVFFVIFYRTVVLNYRRQKKDYEDRLKIEKAEREERKKLRQLERELEGLEGADD---EIEQGEAEQNPHL 384 (795)
Q Consensus 308 ~~~~~i~~l~~~~~l~~Ykgny~~y~~~~e~~e~~~~~ek~~e~~~~ei~~Lekele~~~~~~~---~~~~~~~~~~~~~ 384 (795)
..++.|..+ .+.++++|+|||.-|...+. +......+.++.++.++++++.+=........ +.......... .
T Consensus 474 ~VCtdIIHL-D~qkLhyYrGNY~~FKKmY~--Qk~~e~~K~yekQeK~LkelKa~GkS~KqAEkq~Ke~ltrKq~K~~-~ 549 (807)
T KOG0066|consen 474 SVCTDIIHL-DNQKLHYYRGNYTLFKKMYA--QKMQEHEKNYEKQEKQLKELKAEGKSAKQAEKQVKEQLTRKQKKGG-K 549 (807)
T ss_pred HHHHHHhhh-hhhhhhhhcchHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhcc-c
Confidence 346778888 88899999999999999998 55667777788887777777663211110000 00000000000 0
Q ss_pred HHhhchhhh--HHHHHHHhcCCCCcccccCccccccCccCchHHHHHHHHHHHhc-ccccccccc--CcccCCceEEECC
Q 003795 385 KMAMQFMKS--GARVRRAYGKGLPQYLERGVDVKFSDVAGLGKIRLELEEIVKFF-THGEMYRRR--GVRIPGGILLCGP 459 (795)
Q Consensus 385 k~~v~~~~~--~~~vsr~tgipv~~~~~~~~~~~f~~~~gl~~~~~~l~~lv~~~-~~~~~~~~~--gl~i~~giLL~GP 459 (795)
+.....++. .+-+. +..+-...+.|++...+...++++.++...| +...+|..+ |+.+...|+|+||
T Consensus 550 Knq~dded~gapELL~--------RpKEY~VkF~FPep~~L~PPvLGlH~VtFgy~gqkpLFkkldFGiDmdSRiaIVGP 621 (807)
T KOG0066|consen 550 KNQNDDEDAGAPELLQ--------RPKEYSVKFQFPEPTKLNPPVLGLHDVTFGYPGQKPLFKKLDFGIDMDSRIAIVGP 621 (807)
T ss_pred cccCccccccCHHHHh--------CchheEEEEecCCCCCCCCCeeecccccccCCCCCchhhcccccccccceeEEECC
Confidence 111111111 11111 1112235677888888999999999999988 455677665 4455566999999
Q ss_pred CCCchhHHHHHhhhhccccEEEeeccceehh-hhccchh-hH---HhHHHHHHhcCCceeEhHHHHHHhhhccCCCC---
Q 003795 460 PGVGKTLLAKAVAGEAGVNFFSISASQFVEI-YVGVGAS-RV---RSLYQEAKDNAPSVVFIDELDAVGRERGLIKG--- 531 (795)
Q Consensus 460 pGtGKTtLakaLA~el~~~~~~is~se~~~~-~~g~~~~-~l---~~lf~~ar~~~p~Il~IDEID~l~~~r~~~~~--- 531 (795)
||+|||||++.|.|.+.+.-+.+.-...... ++.+... .+ ..-.+...+.. -+--.+....++..+..+-
T Consensus 622 NGVGKSTlLkLL~Gkl~P~~GE~RKnhrL~iG~FdQh~~E~L~~Eetp~EyLqr~F--Nlpyq~ARK~LG~fGL~sHAHT 699 (807)
T KOG0066|consen 622 NGVGKSTLLKLLIGKLDPNDGELRKNHRLRIGWFDQHANEALNGEETPVEYLQRKF--NLPYQEARKQLGTFGLASHAHT 699 (807)
T ss_pred CCccHHHHHHHHhcCCCCCcchhhccceeeeechhhhhHHhhccccCHHHHHHHhc--CCChHHHHHHhhhhhhhhccce
Confidence 9999999999999999877665543322211 1111111 00 00111111100 1222344444444333221
Q ss_pred ------CCcchHHHHHHHHHHhhhcccCCCcEEEE-eccCCCC
Q 003795 532 ------SGGQERDATLNQLLVCLDGFEGRGNVITI-ASTNRPD 567 (795)
Q Consensus 532 ------Sgge~~r~~l~~LL~~ld~~~~~~~VlVI-atTN~~d 567 (795)
|||++.+.+++.|. .....|+|+ .+||.++
T Consensus 700 ikikdLSGGQKaRValaeLa------l~~PDvlILDEPTNNLD 736 (807)
T KOG0066|consen 700 IKIKDLSGGQKARVALAELA------LGGPDVLILDEPTNNLD 736 (807)
T ss_pred EeeeecCCcchHHHHHHHHh------cCCCCEEEecCCCCCcc
Confidence 89999999999887 556677777 8898876
No 137
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.19 E-value=4.2e-10 Score=128.96 Aligned_cols=204 Identities=18% Similarity=0.253 Sum_probs=138.3
Q ss_pred CccccccCccCchHHHHHHHHHHHhccccccccccCcccCCceEEECCCCCchhHHHHHhhhhcccc-------------
Q 003795 412 GVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVN------------- 478 (795)
Q Consensus 412 ~~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el~~~------------- 478 (795)
..+..|+++.|.+..+..+.+.+.. -+++..+||+||+|+|||++|+++|..+...
T Consensus 11 yRP~~~~diiGq~~~v~~L~~~i~~-----------~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~ 79 (451)
T PRK06305 11 YRPQTFSEILGQDAVVAVLKNALRF-----------NRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCA 79 (451)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccH
Confidence 3568899999999888777766642 1345678999999999999999999876432
Q ss_pred ------------EEEeeccceehhhhccchhhHHhHHHHHH----hcCCceeEhHHHHHHhhhccCCCCCCcchHHHHHH
Q 003795 479 ------------FFSISASQFVEIYVGVGASRVRSLYQEAK----DNAPSVVFIDELDAVGRERGLIKGSGGQERDATLN 542 (795)
Q Consensus 479 ------------~~~is~se~~~~~~g~~~~~l~~lf~~ar----~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~ 542 (795)
++.+++.. ..+...++.+.+.+. ...+.|++|||+|.+... ..+
T Consensus 80 ~C~~i~~~~~~d~~~i~g~~------~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~--------------~~n 139 (451)
T PRK06305 80 SCKEISSGTSLDVLEIDGAS------HRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKE--------------AFN 139 (451)
T ss_pred HHHHHhcCCCCceEEeeccc------cCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHH--------------HHH
Confidence 11121110 001123333333332 234679999999988543 578
Q ss_pred HHHHhhhcccCCCcEEEEeccCCCCCCCccccCCCcccceecCCCCCHHHHHHHHHHHHccCCC-CChhhHHHHHhhCCC
Q 003795 543 QLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPM-ADDVDYLAVASMTDG 621 (795)
Q Consensus 543 ~LL~~ld~~~~~~~VlVIatTN~~d~LdpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~~~-~~d~dl~~LA~~t~G 621 (795)
.|+..++. ...++++|++||.+..+.+++++ |+. .+.|.+++.++....+...++..+. .++..+..++..+.|
T Consensus 140 ~LLk~lEe--p~~~~~~Il~t~~~~kl~~tI~s--Rc~-~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~g 214 (451)
T PRK06305 140 SLLKTLEE--PPQHVKFFLATTEIHKIPGTILS--RCQ-KMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQG 214 (451)
T ss_pred HHHHHhhc--CCCCceEEEEeCChHhcchHHHH--hce-EEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 88888884 44577788778888899999988 664 7899999999999888877765543 244457778887764
Q ss_pred CcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Q 003795 622 MVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQ 656 (795)
Q Consensus 622 ~sgadL~~lv~~A~~~A~~~~~~~It~edl~~Al~ 656 (795)
+.+.+.++++..... .+ ..|+.+++..++.
T Consensus 215 -dlr~a~~~Lekl~~~---~~-~~It~~~V~~l~~ 244 (451)
T PRK06305 215 -SLRDAESLYDYVVGL---FP-KSLDPDSVAKALG 244 (451)
T ss_pred -CHHHHHHHHHHHHHh---cc-CCcCHHHHHHHHC
Confidence 455555555544322 22 3488888877653
No 138
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.18 E-value=3.9e-10 Score=122.83 Aligned_cols=206 Identities=22% Similarity=0.265 Sum_probs=130.7
Q ss_pred ccccCccccccCccCchHHHHHHHHHHHhccccccccccCcccCCceEEECCCCCchhHHHHHhhhhccc-----cEEEe
Q 003795 408 YLERGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGV-----NFFSI 482 (795)
Q Consensus 408 ~~~~~~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el~~-----~~~~i 482 (795)
+.++..+..|++..|....+..+...+..- .. ++++|+||||+|||++++++++.+.. .++.+
T Consensus 7 w~~kyrP~~~~~~~g~~~~~~~l~~~i~~~-----------~~-~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~ 74 (319)
T PRK00440 7 WVEKYRPRTLDEIVGQEEIVERLKSYVKEK-----------NM-PHLLFAGPPGTGKTTAALALARELYGEDWRENFLEL 74 (319)
T ss_pred cchhhCCCcHHHhcCcHHHHHHHHHHHhCC-----------CC-CeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEe
Confidence 344556678888888888777766655421 11 23899999999999999999998632 23444
Q ss_pred eccceehhhhccchhhHHhHH-HHHHh-----cCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcccCCCc
Q 003795 483 SASQFVEIYVGVGASRVRSLY-QEAKD-----NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGN 556 (795)
Q Consensus 483 s~se~~~~~~g~~~~~l~~lf-~~ar~-----~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~ 556 (795)
+.++.. ....+...+ +.+.. ..+.+++|||++.+... ....|+..++... .+
T Consensus 75 ~~~~~~------~~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~~--------------~~~~L~~~le~~~--~~ 132 (319)
T PRK00440 75 NASDER------GIDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTSD--------------AQQALRRTMEMYS--QN 132 (319)
T ss_pred cccccc------chHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCHH--------------HHHHHHHHHhcCC--CC
Confidence 333211 111111222 22221 22458999999887433 3445565566433 33
Q ss_pred EEEEeccCCCCCCCccccCCCcccceecCCCCCHHHHHHHHHHHHccCCC-CChhhHHHHHhhCCCCcHHHHHHHHHHHH
Q 003795 557 VITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPM-ADDVDYLAVASMTDGMVGAELANIVEVAA 635 (795)
Q Consensus 557 VlVIatTN~~d~LdpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~~~-~~d~dl~~LA~~t~G~sgadL~~lv~~A~ 635 (795)
+.+|.++|.+..+.+++.+ |+. .+.|++|+.++...+++.++..... .++..+..++..+.| +.+.+.+.++.+.
T Consensus 133 ~~lIl~~~~~~~l~~~l~s--r~~-~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~g-d~r~~~~~l~~~~ 208 (319)
T PRK00440 133 TRFILSCNYSSKIIDPIQS--RCA-VFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEG-DMRKAINALQAAA 208 (319)
T ss_pred CeEEEEeCCccccchhHHH--Hhh-eeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 4556667777777778877 665 6899999999999999988876554 244457778887765 3444445554433
Q ss_pred HHHHHcCCCccCHHHHHHHHH
Q 003795 636 INMMRDGRTEITTDDLLQAAQ 656 (795)
Q Consensus 636 ~~A~~~~~~~It~edl~~Al~ 656 (795)
. . ...||.+++..++.
T Consensus 209 ~----~-~~~it~~~v~~~~~ 224 (319)
T PRK00440 209 A----T-GKEVTEEAVYKITG 224 (319)
T ss_pred H----c-CCCCCHHHHHHHhC
Confidence 2 1 35699999988764
No 139
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.17 E-value=4.4e-10 Score=123.80 Aligned_cols=132 Identities=21% Similarity=0.212 Sum_probs=92.6
Q ss_pred CceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhccc-----------CCCcEEEEeccCCCC-CCCccccCCCc
Q 003795 511 PSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE-----------GRGNVITIASTNRPD-ILDPALVRPGR 578 (795)
Q Consensus 511 p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~-----------~~~~VlVIatTN~~d-~LdpaLlrpgR 578 (795)
.+++|+||++.+... ++..|+..|+.-. ...++++|+++|..+ .++++|+. |
T Consensus 132 ~GvL~lDEi~~L~~~--------------~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~Lld--R 195 (337)
T TIGR02030 132 RGILYIDEVNLLEDH--------------LVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--R 195 (337)
T ss_pred CCEEEecChHhCCHH--------------HHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHh--h
Confidence 468999999987554 6677777665311 124688889998765 68999999 9
Q ss_pred ccceecCCCCCH-HHHHHHHHHHHccC-------------------------------CCCChh--hHHHHHhhCCCCcH
Q 003795 579 FDRKIFIPKPGL-IGRMEILKVHARKK-------------------------------PMADDV--DYLAVASMTDGMVG 624 (795)
Q Consensus 579 Fd~~I~~~~Pd~-~eR~~Il~~~l~~~-------------------------------~~~~d~--dl~~LA~~t~G~sg 624 (795)
|...+.++.|+. ++|.+|++...... .+.+.+ -+..++..+..-+.
T Consensus 196 f~l~i~l~~p~~~eer~eIL~~~~~~~~~~~~~~~~~~~e~~~~~~~I~~a~~~~~~V~v~d~~~~~i~~l~~~~~~~s~ 275 (337)
T TIGR02030 196 FGLHAEIRTVRDVELRVEIVERRTEYDADPHAFCEKWQTEQEALQAKIVNAQNLLPQVTIPYDVLVKVAELCAELDVDGL 275 (337)
T ss_pred cceEEECCCCCCHHHHHHHHHhhhhcccCchhhhhhhhhhhhcCHHHHHHHHHHhccCcCCHHHHHHHHHHHHHHCCCCC
Confidence 999999998875 88899998743210 011110 12233444443344
Q ss_pred HHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHH
Q 003795 625 AELANIVEVAAINMMRDGRTEITTDDLLQAAQIE 658 (795)
Q Consensus 625 adL~~lv~~A~~~A~~~~~~~It~edl~~Al~~~ 658 (795)
+--..+++.|...|..+|+..|+.+|+..++...
T Consensus 276 Ra~i~l~raArA~Aal~GR~~V~~dDv~~~a~~v 309 (337)
T TIGR02030 276 RGELTLNRAAKALAAFEGRTEVTVDDIRRVAVLA 309 (337)
T ss_pred cHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 4455888999999999999999999999998743
No 140
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.17 E-value=5.6e-10 Score=132.03 Aligned_cols=211 Identities=18% Similarity=0.220 Sum_probs=138.5
Q ss_pred cCccccccCccCchHHHHHHHHHHHhccccccccccCcccCCceEEECCCCCchhHHHHHhhhhccccEEE---eecc--
Q 003795 411 RGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFS---ISAS-- 485 (795)
Q Consensus 411 ~~~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~---is~s-- 485 (795)
+.....|+++.|.+..+..+...+.. -+++..+||+||+|+|||++++++|..+.+.... ..|+
T Consensus 9 kyRP~~~~eiiGq~~~~~~L~~~i~~-----------~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c 77 (585)
T PRK14950 9 KWRSQTFAELVGQEHVVQTLRNAIAE-----------GRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTC 77 (585)
T ss_pred HhCCCCHHHhcCCHHHHHHHHHHHHh-----------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccC
Confidence 34678899999999988777666542 1244558999999999999999999877532110 0000
Q ss_pred ------------ceehhh--hccchhhHHhHHHHHHh----cCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHh
Q 003795 486 ------------QFVEIY--VGVGASRVRSLYQEAKD----NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVC 547 (795)
Q Consensus 486 ------------e~~~~~--~g~~~~~l~~lf~~ar~----~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ 547 (795)
++.... .......++.+.+.+.. ....|++|||+|.+... .++.|+..
T Consensus 78 ~~c~~i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~--------------a~naLLk~ 143 (585)
T PRK14950 78 EMCRAIAEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTA--------------AFNALLKT 143 (585)
T ss_pred HHHHHHhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHH--------------HHHHHHHH
Confidence 000000 01112234444444332 23458999999988543 67888888
Q ss_pred hhcccCCCcEEEEeccCCCCCCCccccCCCcccceecCCCCCHHHHHHHHHHHHccCCCC-ChhhHHHHHhhCCCCcHHH
Q 003795 548 LDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAE 626 (795)
Q Consensus 548 ld~~~~~~~VlVIatTN~~d~LdpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~~~~-~d~dl~~LA~~t~G~sgad 626 (795)
++. ...+++||.+|+..+.+.+.+++ |+. .+.|..++..+...++...+...++. ++..+..++..+.| +.++
T Consensus 144 LEe--pp~~tv~Il~t~~~~kll~tI~S--R~~-~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~G-dlr~ 217 (585)
T PRK14950 144 LEE--PPPHAIFILATTEVHKVPATILS--RCQ-RFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATG-SMRD 217 (585)
T ss_pred Hhc--CCCCeEEEEEeCChhhhhHHHHh--ccc-eeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHH
Confidence 884 34567777777777888888887 654 68899999999998888777665432 33446677777765 6777
Q ss_pred HHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Q 003795 627 LANIVEVAAINMMRDGRTEITTDDLLQAAQ 656 (795)
Q Consensus 627 L~~lv~~A~~~A~~~~~~~It~edl~~Al~ 656 (795)
+.+.++..... +...|+.+++...+.
T Consensus 218 al~~LekL~~y----~~~~It~e~V~~ll~ 243 (585)
T PRK14950 218 AENLLQQLATT----YGGEISLSQVQSLLG 243 (585)
T ss_pred HHHHHHHHHHh----cCCCCCHHHHHHHhc
Confidence 77777654321 344689888876544
No 141
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.17 E-value=4.7e-10 Score=132.30 Aligned_cols=213 Identities=17% Similarity=0.242 Sum_probs=139.3
Q ss_pred CccccccCccCchHHHHHHHHHHHhccccccccccCcccCCceEEECCCCCchhHHHHHhhhhccccEEE----------
Q 003795 412 GVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFS---------- 481 (795)
Q Consensus 412 ~~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~---------- 481 (795)
.++..|+++.|.+..+..+.+.+.. -+++.++||+||+|+||||+|+++|+.+.+....
T Consensus 10 yRP~~f~eivGQe~i~~~L~~~i~~-----------~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~ 78 (620)
T PRK14954 10 YRPSKFADITAQEHITHTIQNSLRM-----------DRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVT 78 (620)
T ss_pred HCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccC
Confidence 4678899999988888777665431 2556679999999999999999999987652100
Q ss_pred eeccce-----------ehh--hhcc---chhhHHhHHHHHHh----cCCceeEhHHHHHHhhhccCCCCCCcchHHHHH
Q 003795 482 ISASQF-----------VEI--YVGV---GASRVRSLYQEAKD----NAPSVVFIDELDAVGRERGLIKGSGGQERDATL 541 (795)
Q Consensus 482 is~se~-----------~~~--~~g~---~~~~l~~lf~~ar~----~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l 541 (795)
-.|+.. .+. +.+. +...++.+.+.+.. ....|++|||+|.+... .+
T Consensus 79 ~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~--------------a~ 144 (620)
T PRK14954 79 EPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTA--------------AF 144 (620)
T ss_pred CCCccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHH--------------HH
Confidence 011100 000 1111 12345555555432 23458999999888543 67
Q ss_pred HHHHHhhhcccCCCcEEEEeccCCCCCCCccccCCCcccceecCCCCCHHHHHHHHHHHHccCCC-CChhhHHHHHhhCC
Q 003795 542 NQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPM-ADDVDYLAVASMTD 620 (795)
Q Consensus 542 ~~LL~~ld~~~~~~~VlVIatTN~~d~LdpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~~~-~~d~dl~~LA~~t~ 620 (795)
+.|+..|+ .....+++|.+|+.+..+.+.+.+ |. ..+.|.+++.++....+...+..... .++..+..++..+.
T Consensus 145 naLLK~LE--ePp~~tv~IL~t~~~~kLl~TI~S--Rc-~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La~~s~ 219 (620)
T PRK14954 145 NAFLKTLE--EPPPHAIFIFATTELHKIPATIAS--RC-QRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARKAQ 219 (620)
T ss_pred HHHHHHHh--CCCCCeEEEEEeCChhhhhHHHHh--hc-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhC
Confidence 88888888 444556666666777888889988 54 38999999999988888877665443 34455777888776
Q ss_pred CCcHHHHHHHHHHHHHHHH-HcCCCccCHHHHHHHH
Q 003795 621 GMVGAELANIVEVAAINMM-RDGRTEITTDDLLQAA 655 (795)
Q Consensus 621 G~sgadL~~lv~~A~~~A~-~~~~~~It~edl~~Al 655 (795)
| +.+++.+.++.....+. ......|+.+++.+.+
T Consensus 220 G-dlr~al~eLeKL~~y~~~~~~~~~It~~~V~~lv 254 (620)
T PRK14954 220 G-SMRDAQSILDQVIAFSVGSEAEKVIAYQGVAELL 254 (620)
T ss_pred C-CHHHHHHHHHHHHHhccccccCCccCHHHHHHHH
Confidence 5 55555566665443331 1224568888887765
No 142
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.15 E-value=7.6e-11 Score=131.30 Aligned_cols=84 Identities=24% Similarity=0.388 Sum_probs=60.3
Q ss_pred CceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcc--------cCCCcEEEEeccC----CCCCCCccccCCCc
Q 003795 511 PSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGF--------EGRGNVITIASTN----RPDILDPALVRPGR 578 (795)
Q Consensus 511 p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~--------~~~~~VlVIatTN----~~d~LdpaLlrpgR 578 (795)
.+|+||||||++...... .+.+-...-+...||..+++. .+..++++|++.- .|+.+=|+|. ||
T Consensus 248 ~GIVfiDEiDKIa~~~~~--~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~--GR 323 (441)
T TIGR00390 248 SGIIFIDEIDKIAKKGES--SGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQ--GR 323 (441)
T ss_pred CCEEEEEchhhhcccCCC--CCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHh--Cc
Confidence 469999999999865321 111222223778888888772 3457899997763 3555667775 59
Q ss_pred ccceecCCCCCHHHHHHHHH
Q 003795 579 FDRKIFIPKPGLIGRMEILK 598 (795)
Q Consensus 579 Fd~~I~~~~Pd~~eR~~Il~ 598 (795)
|+.++.+.+++.++...||.
T Consensus 324 ~Pi~v~L~~L~~edL~rILt 343 (441)
T TIGR00390 324 FPIRVELQALTTDDFERILT 343 (441)
T ss_pred cceEEECCCCCHHHHHHHhc
Confidence 99999999999999998884
No 143
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.14 E-value=4.7e-10 Score=132.83 Aligned_cols=209 Identities=20% Similarity=0.271 Sum_probs=137.6
Q ss_pred ccCccccccCccCchHHHHHHHHHHHhccccccccccCcccCCceEEECCCCCchhHHHHHhhhhccccEEE----eecc
Q 003795 410 ERGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFS----ISAS 485 (795)
Q Consensus 410 ~~~~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~----is~s 485 (795)
.+.....|+++.|.+..+..+..++..- +++.++||+||+|+|||++|+++|+.+.+.... -.|+
T Consensus 8 ~kyRP~~f~~liGq~~i~~~L~~~l~~~-----------rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg 76 (620)
T PRK14948 8 HKYRPQRFDELVGQEAIATTLKNALISN-----------RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCG 76 (620)
T ss_pred HHhCCCcHhhccChHHHHHHHHHHHHcC-----------CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCc
Confidence 3446688999999988887777766531 244568999999999999999999987542110 0011
Q ss_pred --------------cee--hhhhccchhhHHhHHHHHHhc----CCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHH
Q 003795 486 --------------QFV--EIYVGVGASRVRSLYQEAKDN----APSVVFIDELDAVGRERGLIKGSGGQERDATLNQLL 545 (795)
Q Consensus 486 --------------e~~--~~~~g~~~~~l~~lf~~ar~~----~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL 545 (795)
++. +...+.+...++.+.+.+... ...|++|||+|.+... .++.||
T Consensus 77 ~C~~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~--------------a~naLL 142 (620)
T PRK14948 77 KCELCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTA--------------AFNALL 142 (620)
T ss_pred ccHHHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHH--------------HHHHHH
Confidence 000 001112234566776665432 3469999999988543 788899
Q ss_pred HhhhcccCCCcEEEEeccCCCCCCCccccCCCcccceecCCCCCHHHHHHHHHHHHccCCCC-ChhhHHHHHhhCCCCcH
Q 003795 546 VCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVG 624 (795)
Q Consensus 546 ~~ld~~~~~~~VlVIatTN~~d~LdpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~~~~-~d~dl~~LA~~t~G~sg 624 (795)
..|+ ....++++|++|++++.+.+.|++ |+. .+.|..++.++....+...+.+.... +...+..++..+.|..
T Consensus 143 K~LE--ePp~~tvfIL~t~~~~~llpTIrS--Rc~-~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s~G~l- 216 (620)
T PRK14948 143 KTLE--EPPPRVVFVLATTDPQRVLPTIIS--RCQ-RFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQGGL- 216 (620)
T ss_pred HHHh--cCCcCeEEEEEeCChhhhhHHHHh--hee-EEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCH-
Confidence 9998 455677888888888889999988 654 78888888888777777666554322 3344677787777643
Q ss_pred HHHHHHHHHHHHHHHHcCCCccCHHHHHHH
Q 003795 625 AELANIVEVAAINMMRDGRTEITTDDLLQA 654 (795)
Q Consensus 625 adL~~lv~~A~~~A~~~~~~~It~edl~~A 654 (795)
+++.++++...+. . ..|+.+++.+.
T Consensus 217 r~A~~lLeklsL~---~--~~It~e~V~~l 241 (620)
T PRK14948 217 RDAESLLDQLSLL---P--GPITPEAVWDL 241 (620)
T ss_pred HHHHHHHHHHHhc---c--CCCCHHHHHHH
Confidence 5555666543321 1 24777666554
No 144
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.13 E-value=1.4e-10 Score=126.15 Aligned_cols=138 Identities=16% Similarity=0.149 Sum_probs=97.6
Q ss_pred CCceEEECCCCCchhHHHHHhhhhccccEEEeeccceehh--hhccchhh------H----HhHHHHHHhcCCceeEhHH
Q 003795 451 PGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEI--YVGVGASR------V----RSLYQEAKDNAPSVVFIDE 518 (795)
Q Consensus 451 ~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~se~~~~--~~g~~~~~------l----~~lf~~ar~~~p~Il~IDE 518 (795)
.+.|+|.||||||||++++.||..++.++++++++..... ++|...-. . ...+-.+.. .++++++||
T Consensus 64 ~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~-~g~illlDE 142 (327)
T TIGR01650 64 DRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQ-HNVALCFDE 142 (327)
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHh-CCeEEEech
Confidence 4569999999999999999999999999999998876655 44432110 0 112223332 456899999
Q ss_pred HHHHhhhccCCCCCCcchHHHHHHHHHHh-----hhc----ccCCCcEEEEeccCCCC------------CCCccccCCC
Q 003795 519 LDAVGRERGLIKGSGGQERDATLNQLLVC-----LDG----FEGRGNVITIASTNRPD------------ILDPALVRPG 577 (795)
Q Consensus 519 ID~l~~~r~~~~~Sgge~~r~~l~~LL~~-----ld~----~~~~~~VlVIatTN~~d------------~LdpaLlrpg 577 (795)
++...++ ....++.+|.. +.+ +....++.||+|+|..+ .++++++.
T Consensus 143 in~a~p~-----------~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lD-- 209 (327)
T TIGR01650 143 YDAGRPD-----------VMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMD-- 209 (327)
T ss_pred hhccCHH-----------HHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHh--
Confidence 9987554 11234444431 111 12345788999999864 36889998
Q ss_pred cccceecCCCCCHHHHHHHHHHHHc
Q 003795 578 RFDRKIFIPKPGLIGRMEILKVHAR 602 (795)
Q Consensus 578 RFd~~I~~~~Pd~~eR~~Il~~~l~ 602 (795)
||-.++.++.|+.++-.+|+.....
T Consensus 210 RF~i~~~~~Yp~~e~E~~Il~~~~~ 234 (327)
T TIGR01650 210 RWSIVTTLNYLEHDNEAAIVLAKAK 234 (327)
T ss_pred heeeEeeCCCCCHHHHHHHHHhhcc
Confidence 9988889999999999999987654
No 145
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.13 E-value=1.8e-10 Score=128.41 Aligned_cols=175 Identities=27% Similarity=0.385 Sum_probs=117.6
Q ss_pred ccCchHHHHHHHHHHHh-ccccccccccCc-ccCCceEEECCCCCchhHHHHHhhhhccccEEEeeccceeh-hhhccc-
Q 003795 420 VAGLGKIRLELEEIVKF-FTHGEMYRRRGV-RIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVE-IYVGVG- 495 (795)
Q Consensus 420 ~~gl~~~~~~l~~lv~~-~~~~~~~~~~gl-~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~se~~~-~~~g~~- 495 (795)
+.|..+++..+..++.. +........... ..|++++|+||||||||+++++||..++.+|+.++++.|.+ .|+|..
T Consensus 17 IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d~ 96 (443)
T PRK05201 17 IIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDV 96 (443)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCCH
Confidence 66777777666555432 111111111111 12467999999999999999999999999999999988876 466633
Q ss_pred hhhHHhHHHHH---------------------------------------------------------------------
Q 003795 496 ASRVRSLYQEA--------------------------------------------------------------------- 506 (795)
Q Consensus 496 ~~~l~~lf~~a--------------------------------------------------------------------- 506 (795)
...++.+|+.+
T Consensus 97 e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei~ 176 (443)
T PRK05201 97 ESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEIEIE 176 (443)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEEEEE
Confidence 22333343333
Q ss_pred -------------------------------------------------------------------H--hcCCceeEhH
Q 003795 507 -------------------------------------------------------------------K--DNAPSVVFID 517 (795)
Q Consensus 507 -------------------------------------------------------------------r--~~~p~Il~ID 517 (795)
. ....+|+|||
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~GIVfiD 256 (443)
T PRK05201 177 VAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIVFID 256 (443)
T ss_pred ecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEEE
Confidence 0 0134699999
Q ss_pred HHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcc--------cCCCcEEEEeccC----CCCCCCccccCCCcccceecC
Q 003795 518 ELDAVGRERGLIKGSGGQERDATLNQLLVCLDGF--------EGRGNVITIASTN----RPDILDPALVRPGRFDRKIFI 585 (795)
Q Consensus 518 EID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~--------~~~~~VlVIatTN----~~d~LdpaLlrpgRFd~~I~~ 585 (795)
|||++...... ++.+-...-+...||..++|- .+..+++||++.- .|+.+-|+|.- ||+.++.+
T Consensus 257 EiDKIa~~~~~--~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~G--R~Pi~v~L 332 (443)
T PRK05201 257 EIDKIAARGGS--SGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQG--RFPIRVEL 332 (443)
T ss_pred cchhhcccCCC--CCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhC--ccceEEEC
Confidence 99999865321 111222233778888888872 3457899997763 34556688865 99999999
Q ss_pred CCCCHHHHHHHHH
Q 003795 586 PKPGLIGRMEILK 598 (795)
Q Consensus 586 ~~Pd~~eR~~Il~ 598 (795)
.+++.++...||.
T Consensus 333 ~~L~~~dL~~ILt 345 (443)
T PRK05201 333 DALTEEDFVRILT 345 (443)
T ss_pred CCCCHHHHHHHhc
Confidence 9999999999884
No 146
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.12 E-value=1.5e-10 Score=120.35 Aligned_cols=168 Identities=21% Similarity=0.317 Sum_probs=109.1
Q ss_pred eEEECCCCCchhHHHHHhhhhc-----cccEEEeeccceehhhhccchh-hHHhHHHHHHhcCCceeEhHHHHHHhhhcc
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEA-----GVNFFSISASQFVEIYVGVGAS-RVRSLYQEAKDNAPSVVFIDELDAVGRERG 527 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el-----~~~~~~is~se~~~~~~g~~~~-~l~~lf~~ar~~~p~Il~IDEID~l~~~r~ 527 (795)
++|+||+|+|||+|+++++++. +..+++++..+|...+...... .+..+.+..+ ..++++||+++.+.+..
T Consensus 37 l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~~--~~DlL~iDDi~~l~~~~- 113 (219)
T PF00308_consen 37 LFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEEFKDRLR--SADLLIIDDIQFLAGKQ- 113 (219)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHHC--TSSEEEEETGGGGTTHH-
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchhhhhhhh--cCCEEEEecchhhcCch-
Confidence 8999999999999999999864 4568889888887765432222 1222223332 45699999999885431
Q ss_pred CCCCCCcchHHHHHHHHHHhhhcccCCCcEEEEeccCCCCC---CCccccCCCccc--ceecCCCCCHHHHHHHHHHHHc
Q 003795 528 LIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDI---LDPALVRPGRFD--RKIFIPKPGLIGRMEILKVHAR 602 (795)
Q Consensus 528 ~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVIatTN~~d~---LdpaLlrpgRFd--~~I~~~~Pd~~eR~~Il~~~l~ 602 (795)
.+...|+..++.+...++.+|+++...|.. +++.|.+ ||. ..+.+.+|+.+.|..|++..+.
T Consensus 114 -----------~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~S--Rl~~Gl~~~l~~pd~~~r~~il~~~a~ 180 (219)
T PF00308_consen 114 -----------RTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRS--RLSWGLVVELQPPDDEDRRRILQKKAK 180 (219)
T ss_dssp -----------HHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHH--HHHCSEEEEE----HHHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhh--hHhhcchhhcCCCCHHHHHHHHHHHHH
Confidence 144555555555555666677777666654 5677777 764 4888999999999999999887
Q ss_pred cCCCCChhh-HHHHHhhCCCCcHHHHHHHHHHHHHHH
Q 003795 603 KKPMADDVD-YLAVASMTDGMVGAELANIVEVAAINM 638 (795)
Q Consensus 603 ~~~~~~d~d-l~~LA~~t~G~sgadL~~lv~~A~~~A 638 (795)
...+.-+.+ ...|+.... -+.++|..+++.-...+
T Consensus 181 ~~~~~l~~~v~~~l~~~~~-~~~r~L~~~l~~l~~~~ 216 (219)
T PF00308_consen 181 ERGIELPEEVIEYLARRFR-RDVRELEGALNRLDAYA 216 (219)
T ss_dssp HTT--S-HHHHHHHHHHTT-SSHHHHHHHHHHHHHHH
T ss_pred HhCCCCcHHHHHHHHHhhc-CCHHHHHHHHHHHHHHh
Confidence 776553333 555666654 47888888888665443
No 147
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.10 E-value=3.5e-10 Score=135.21 Aligned_cols=235 Identities=17% Similarity=0.172 Sum_probs=133.7
Q ss_pred hhhhhhccccceeeeechhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchhhhhhhhhcCchHHHhh
Q 003795 309 DSTVATGLGIVFFVIFYRTVVLNYRRQKKDYEDRLKIEKAEREERKKLRQLERELEGLEGADDEIEQGEAEQNPHLKMAM 388 (795)
Q Consensus 309 ~~~~i~~l~~~~~l~~Ykgny~~y~~~~e~~e~~~~~ek~~e~~~~ei~~Lekele~~~~~~~~~~~~~~~~~~~~k~~v 388 (795)
.++++..+ ..|++..|.|+|+.|..+++ ++.....+.++.++.++++++..+.+..... ...+.+.
T Consensus 212 ~~d~i~~L-~~G~i~~~~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~r~~~~a-----------~~~~~a~ 277 (638)
T PRK10636 212 IVDKIIHI-EQQSLFEYTGNYSSFEVQRA--TRLAQQQAMYESQQERVAHLQSYIDRFRAKA-----------TKAKQAQ 277 (638)
T ss_pred hcCEEEEE-eCCEEEEecCCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-----------hhHHHHH
Confidence 35667777 67899999999999997766 3444455556666666776666665322100 0001111
Q ss_pred chhhhHHHHHHHhcCCCCcccccCccccccCccCchHHHHHHHHHHHhccccccccccCcccCCc--eEEECCCCCchhH
Q 003795 389 QFMKSGARVRRAYGKGLPQYLERGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTL 466 (795)
Q Consensus 389 ~~~~~~~~vsr~tgipv~~~~~~~~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~~g--iLL~GPpGtGKTt 466 (795)
...+..+.+.. +. +........+.|......++.++.++++...|++..++.++++.+..| +.|+||||+||||
T Consensus 278 ~r~~~l~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~il~~isl~i~~Ge~~~l~G~NGsGKST 353 (638)
T PRK10636 278 SRIKMLERMEL---IA-PAHVDNPFHFSFRAPESLPNPLLKMEKVSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGKST 353 (638)
T ss_pred HHHHHHHHhhc---cc-ccccCCceeEecCCCccCCCceEEEEeeEEEeCCeeeeccceEEECCCCEEEEECCCCCCHHH
Confidence 11111111111 00 000012233444433333455667777777777767889999999988 9999999999999
Q ss_pred HHHHhhhhccccEEEeeccc-eehhhhccch-hhH---HhHHHHHHhcCCceeEhHHHHHHhhhccCC---------CCC
Q 003795 467 LAKAVAGEAGVNFFSISASQ-FVEIYVGVGA-SRV---RSLYQEAKDNAPSVVFIDELDAVGRERGLI---------KGS 532 (795)
Q Consensus 467 LakaLA~el~~~~~~is~se-~~~~~~g~~~-~~l---~~lf~~ar~~~p~Il~IDEID~l~~~r~~~---------~~S 532 (795)
|+++|+|...+..+.+.... ..-.|+.+.. ..+ ..+++......+. ..-..+..++...++. .=|
T Consensus 354 Llk~l~G~~~p~~G~i~~~~~~~igy~~Q~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~L~~~~l~~~~~~~~~~~LS 432 (638)
T PRK10636 354 LIKLLAGELAPVSGEIGLAKGIKLGYFAQHQLEFLRADESPLQHLARLAPQ-ELEQKLRDYLGGFGFQGDKVTEETRRFS 432 (638)
T ss_pred HHHHHhCCCCCCCCeEEECCCEEEEEecCcchhhCCccchHHHHHHHhCch-hhHHHHHHHHHHcCCChhHhcCchhhCC
Confidence 99999998877666665432 1111332221 000 1122222211221 1122333333332221 129
Q ss_pred CcchHHHHHHHHHHhhhcccCCCcEEEE-eccCCCCC
Q 003795 533 GGQERDATLNQLLVCLDGFEGRGNVITI-ASTNRPDI 568 (795)
Q Consensus 533 gge~~r~~l~~LL~~ld~~~~~~~VlVI-atTN~~d~ 568 (795)
||++.+..+..++ ...++++++ .+||+.|.
T Consensus 433 gGekqRl~La~~l------~~~p~lLlLDEPt~~LD~ 463 (638)
T PRK10636 433 GGEKARLVLALIV------WQRPNLLLLDEPTNHLDL 463 (638)
T ss_pred HHHHHHHHHHHHH------hcCCCEEEEcCCCCCCCH
Confidence 9999999998888 456788888 88887763
No 148
>PRK06620 hypothetical protein; Validated
Probab=99.10 E-value=6.4e-10 Score=115.36 Aligned_cols=164 Identities=13% Similarity=0.139 Sum_probs=106.1
Q ss_pred CceEEECCCCCchhHHHHHhhhhccccEEEeeccceehhhhccchhhHHhHHHHHHhcCCceeEhHHHHHHhhhccCCCC
Q 003795 452 GGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKG 531 (795)
Q Consensus 452 ~giLL~GPpGtGKTtLakaLA~el~~~~~~is~se~~~~~~g~~~~~l~~lf~~ar~~~p~Il~IDEID~l~~~r~~~~~ 531 (795)
..++|+||+|+|||+|+++++...+..+.. ... . ....+ ...++++||||+.+..
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~--~~~-----~------~~~~~-----~~~d~lliDdi~~~~~------- 99 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAYIIK--DIF-----F------NEEIL-----EKYNAFIIEDIENWQE------- 99 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCEEcc--hhh-----h------chhHH-----hcCCEEEEeccccchH-------
Confidence 458999999999999999999876642211 110 0 00111 1236899999984411
Q ss_pred CCcchHHHHHHHHHHhhhcccCCCcEEEEeccCCCCC--CCccccCCCccc--ceecCCCCCHHHHHHHHHHHHccCCC-
Q 003795 532 SGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDI--LDPALVRPGRFD--RKIFIPKPGLIGRMEILKVHARKKPM- 606 (795)
Q Consensus 532 Sgge~~r~~l~~LL~~ld~~~~~~~VlVIatTN~~d~--LdpaLlrpgRFd--~~I~~~~Pd~~eR~~Il~~~l~~~~~- 606 (795)
..+-.++..+ ...+..++|+++..|.. + |+|++ |+. .++.+.+|+.+.+..+++.++....+
T Consensus 100 -------~~lf~l~N~~---~e~g~~ilits~~~p~~l~l-~~L~S--Rl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~ 166 (214)
T PRK06620 100 -------PALLHIFNII---NEKQKYLLLTSSDKSRNFTL-PDLSS--RIKSVLSILLNSPDDELIKILIFKHFSISSVT 166 (214)
T ss_pred -------HHHHHHHHHH---HhcCCEEEEEcCCCccccch-HHHHH--HHhCCceEeeCCCCHHHHHHHHHHHHHHcCCC
Confidence 1222333322 34556778877765554 5 78887 764 46899999999999999988775443
Q ss_pred CChhhHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHH
Q 003795 607 ADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAA 655 (795)
Q Consensus 607 ~~d~dl~~LA~~t~G~sgadL~~lv~~A~~~A~~~~~~~It~edl~~Al 655 (795)
.++..+..|+.+.. -+.+.+.++++.....+... +..||...+.+++
T Consensus 167 l~~ev~~~L~~~~~-~d~r~l~~~l~~l~~~~~~~-~~~it~~~~~~~l 213 (214)
T PRK06620 167 ISRQIIDFLLVNLP-REYSKIIEILENINYFALIS-KRKITISLVKEVL 213 (214)
T ss_pred CCHHHHHHHHHHcc-CCHHHHHHHHHHHHHHHHHc-CCCCCHHHHHHHh
Confidence 23444677777775 46677777777654333333 3568988888764
No 149
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.08 E-value=1.5e-09 Score=119.87 Aligned_cols=218 Identities=21% Similarity=0.237 Sum_probs=134.6
Q ss_pred ccccccCccCchHHHHHHHHHHHhccccccccccCcccCCceEEECCCCCchhHHHHHhhhhccc-------cEEE----
Q 003795 413 VDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGV-------NFFS---- 481 (795)
Q Consensus 413 ~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el~~-------~~~~---- 481 (795)
.-+.|.++.|.++.+..+.-... ++ -.+|++|.|++||||||++++++..+.. +|..
T Consensus 12 ~~~pf~~ivGq~~~k~al~~~~~---~p---------~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~~ 79 (350)
T CHL00081 12 PVFPFTAIVGQEEMKLALILNVI---DP---------KIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPSD 79 (350)
T ss_pred CCCCHHHHhChHHHHHHHHHhcc---CC---------CCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCCC
Confidence 35678888898887755543322 11 1256999999999999999999876531 1210
Q ss_pred -----------eec----------cceehhhhccchhhH------HhHHHHH---------HhcCCceeEhHHHHHHhhh
Q 003795 482 -----------ISA----------SQFVEIYVGVGASRV------RSLYQEA---------KDNAPSVVFIDELDAVGRE 525 (795)
Q Consensus 482 -----------is~----------se~~~~~~g~~~~~l------~~lf~~a---------r~~~p~Il~IDEID~l~~~ 525 (795)
... ..+++.-.|.+...+ ...+... .....+++++||++.+.+.
T Consensus 80 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~~~ 159 (350)
T CHL00081 80 PELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDH 159 (350)
T ss_pred hhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCCHH
Confidence 000 000000111111111 1111111 0122468999999988655
Q ss_pred ccCCCCCCcchHHHHHHHHHHhhhcc-----------cCCCcEEEEeccCCCC-CCCccccCCCcccceecCCCCC-HHH
Q 003795 526 RGLIKGSGGQERDATLNQLLVCLDGF-----------EGRGNVITIASTNRPD-ILDPALVRPGRFDRKIFIPKPG-LIG 592 (795)
Q Consensus 526 r~~~~~Sgge~~r~~l~~LL~~ld~~-----------~~~~~VlVIatTN~~d-~LdpaLlrpgRFd~~I~~~~Pd-~~e 592 (795)
+...|+..|+.- .....+++|+|.|..+ .++++++. ||...+.+..|+ .+.
T Consensus 160 --------------~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~Lld--Rf~l~i~l~~~~~~~~ 223 (350)
T CHL00081 160 --------------LVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGMHAEIRTVKDPEL 223 (350)
T ss_pred --------------HHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHH--HhCceeecCCCCChHH
Confidence 666677766531 1234688889888765 68999999 999999999987 588
Q ss_pred HHHHHHHHHccC--CC----------------------------CChhh---HHHHHhhCCCCcHHHHHHHHHHHHHHHH
Q 003795 593 RMEILKVHARKK--PM----------------------------ADDVD---YLAVASMTDGMVGAELANIVEVAAINMM 639 (795)
Q Consensus 593 R~~Il~~~l~~~--~~----------------------------~~d~d---l~~LA~~t~G~sgadL~~lv~~A~~~A~ 639 (795)
+.+|++...... +. .++.. +..++..+.--+.+--..+++.|...|+
T Consensus 224 e~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~ar~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~raArA~Aa 303 (350)
T CHL00081 224 RVKIVEQRTSFDKNPQEFREKYEESQEELRSKIVAAQNLLPKVEIDYDLRVKISQICSELDVDGLRGDIVTNRAAKALAA 303 (350)
T ss_pred HHHHHHhhhccccChhhhhhhhccccccCHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHCCCCChHHHHHHHHHHHHHH
Confidence 999998653211 00 01111 2233334433344444488888999999
Q ss_pred HcCCCccCHHHHHHHHHHH
Q 003795 640 RDGRTEITTDDLLQAAQIE 658 (795)
Q Consensus 640 ~~~~~~It~edl~~Al~~~ 658 (795)
..|+..|+.+|+..++...
T Consensus 304 l~GR~~V~pdDv~~~a~~v 322 (350)
T CHL00081 304 FEGRTEVTPKDIFKVITLC 322 (350)
T ss_pred HcCCCCCCHHHHHHHHHHH
Confidence 9999999999999998743
No 150
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=1.8e-09 Score=120.34 Aligned_cols=192 Identities=24% Similarity=0.362 Sum_probs=132.5
Q ss_pred ccCCceEEECCCCCchhHHHHHhhhhcccc-----EEEeeccceehhh---------h------ccch-hhHHhHHHHHH
Q 003795 449 RIPGGILLCGPPGVGKTLLAKAVAGEAGVN-----FFSISASQFVEIY---------V------GVGA-SRVRSLYQEAK 507 (795)
Q Consensus 449 ~i~~giLL~GPpGtGKTtLakaLA~el~~~-----~~~is~se~~~~~---------~------g~~~-~~l~~lf~~ar 507 (795)
..|.+++++||||||||..++.++.++... +++++|-...+.| + |... .....+++...
T Consensus 40 ~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~ 119 (366)
T COG1474 40 ERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLGKVPLTGDSSLEILKRLYDNLS 119 (366)
T ss_pred CCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHH
Confidence 344569999999999999999999987443 7899988766542 1 1111 11233333333
Q ss_pred h-cCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcccCCCcEEEEeccCCCC---CCCccccCCCcc-cce
Q 003795 508 D-NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPD---ILDPALVRPGRF-DRK 582 (795)
Q Consensus 508 ~-~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVIatTN~~d---~LdpaLlrpgRF-d~~ 582 (795)
. ...-|+++||+|.+....+ .++-.|+...... ..+|.+|+.+|..+ .+||.+.+ +| ...
T Consensus 120 ~~~~~~IvvLDEid~L~~~~~-----------~~LY~L~r~~~~~--~~~v~vi~i~n~~~~~~~ld~rv~s--~l~~~~ 184 (366)
T COG1474 120 KKGKTVIVILDEVDALVDKDG-----------EVLYSLLRAPGEN--KVKVSIIAVSNDDKFLDYLDPRVKS--SLGPSE 184 (366)
T ss_pred hcCCeEEEEEcchhhhccccc-----------hHHHHHHhhcccc--ceeEEEEEEeccHHHHHHhhhhhhh--ccCcce
Confidence 3 3455899999999976521 3566666555433 56788999998864 68888877 44 335
Q ss_pred ecCCCCCHHHHHHHHHHHHccC----CCCChh-h-HHHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Q 003795 583 IFIPKPGLIGRMEILKVHARKK----PMADDV-D-YLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQ 656 (795)
Q Consensus 583 I~~~~Pd~~eR~~Il~~~l~~~----~~~~d~-d-l~~LA~~t~G~sgadL~~lv~~A~~~A~~~~~~~It~edl~~Al~ 656 (795)
|.|++++.++...|+....... .+.+++ + ...++....| ..+-...+++.|+..|.+++...++.+++..|..
T Consensus 185 I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~G-DAR~aidilr~A~eiAe~~~~~~v~~~~v~~a~~ 263 (366)
T COG1474 185 IVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESG-DARKAIDILRRAGEIAEREGSRKVSEDHVREAQE 263 (366)
T ss_pred eeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCc-cHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHH
Confidence 8999999999999999877643 222221 1 2233444555 4444458899999999999999999999999944
No 151
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.08 E-value=1.8e-09 Score=127.93 Aligned_cols=203 Identities=19% Similarity=0.285 Sum_probs=138.0
Q ss_pred CccccccCccCchHHHHHHHHHHHhccccccccccCcccCCceEEECCCCCchhHHHHHhhhhcccc-------------
Q 003795 412 GVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVN------------- 478 (795)
Q Consensus 412 ~~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el~~~------------- 478 (795)
..+..|+++.|.+..+..+...+.. -+++..+||+||+|+|||++++++|..+.+.
T Consensus 11 yRP~~f~~viGq~~~~~~L~~~i~~-----------~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~ 79 (614)
T PRK14971 11 YRPSTFESVVGQEALTTTLKNAIAT-----------NKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECE 79 (614)
T ss_pred HCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcch
Confidence 4568899999988888777666542 2356678999999999999999999976431
Q ss_pred ------------EEEeeccceehhhhccchhhHHhHHHHHHhcC----CceeEhHHHHHHhhhccCCCCCCcchHHHHHH
Q 003795 479 ------------FFSISASQFVEIYVGVGASRVRSLYQEAKDNA----PSVVFIDELDAVGRERGLIKGSGGQERDATLN 542 (795)
Q Consensus 479 ------------~~~is~se~~~~~~g~~~~~l~~lf~~ar~~~----p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~ 542 (795)
+..+++++ ......++.+.+.+...+ ..|++|||++.+... .++
T Consensus 80 sC~~~~~~~~~n~~~ld~~~------~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~--------------a~n 139 (614)
T PRK14971 80 SCVAFNEQRSYNIHELDAAS------NNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQA--------------AFN 139 (614)
T ss_pred HHHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHH--------------HHH
Confidence 11121110 011234566665554332 358999999888543 688
Q ss_pred HHHHhhhcccCCCcEEEEeccCCCCCCCccccCCCcccceecCCCCCHHHHHHHHHHHHccCCCC-ChhhHHHHHhhCCC
Q 003795 543 QLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDG 621 (795)
Q Consensus 543 ~LL~~ld~~~~~~~VlVIatTN~~d~LdpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~~~~-~d~dl~~LA~~t~G 621 (795)
.|+..|+. ...++++|.+|+....|-++|++ |.. .+.|.+++.++....+...+...++. +...+..|+..+.|
T Consensus 140 aLLK~LEe--pp~~tifIL~tt~~~kIl~tI~S--Rc~-iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~g 214 (614)
T PRK14971 140 AFLKTLEE--PPSYAIFILATTEKHKILPTILS--RCQ-IFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADG 214 (614)
T ss_pred HHHHHHhC--CCCCeEEEEEeCCchhchHHHHh--hhh-eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 89988884 44567777777777889999998 654 79999999999998888877666554 23346777777754
Q ss_pred CcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHH
Q 003795 622 MVGAELANIVEVAAINMMRDGRTEITTDDLLQAA 655 (795)
Q Consensus 622 ~sgadL~~lv~~A~~~A~~~~~~~It~edl~~Al 655 (795)
+.+++.++++.....+ +.. |+.+++.+.+
T Consensus 215 -dlr~al~~Lekl~~y~---~~~-It~~~V~~~l 243 (614)
T PRK14971 215 -GMRDALSIFDQVVSFT---GGN-ITYKSVIENL 243 (614)
T ss_pred -CHHHHHHHHHHHHHhc---cCC-ccHHHHHHHh
Confidence 5566666665544322 322 7777766554
No 152
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.07 E-value=4.6e-10 Score=105.86 Aligned_cols=119 Identities=45% Similarity=0.659 Sum_probs=79.3
Q ss_pred CceEEECCCCCchhHHHHHhhhhc---cccEEEeeccceehhhhccchhh---HHhHHHHHHhcCCceeEhHHHHHHhhh
Q 003795 452 GGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEIYVGVGASR---VRSLYQEAKDNAPSVVFIDELDAVGRE 525 (795)
Q Consensus 452 ~giLL~GPpGtGKTtLakaLA~el---~~~~~~is~se~~~~~~g~~~~~---l~~lf~~ar~~~p~Il~IDEID~l~~~ 525 (795)
.+++++||||+|||++++.++..+ +.+++.+++.+............ ....+.......++++++||++.+...
T Consensus 20 ~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~~~ 99 (151)
T cd00009 20 KNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLSRG 99 (151)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhhhHH
Confidence 458999999999999999999988 78888888876554322111111 111222333456789999999987322
Q ss_pred ccCCCCCCcchHHHHHHHHHHhhhcccC----CCcEEEEeccCCCC--CCCccccCCCcccceecCC
Q 003795 526 RGLIKGSGGQERDATLNQLLVCLDGFEG----RGNVITIASTNRPD--ILDPALVRPGRFDRKIFIP 586 (795)
Q Consensus 526 r~~~~~Sgge~~r~~l~~LL~~ld~~~~----~~~VlVIatTN~~d--~LdpaLlrpgRFd~~I~~~ 586 (795)
....++..+..... ..++.+|+++|... .+++.+.+ ||+..+.++
T Consensus 100 --------------~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~--r~~~~i~~~ 150 (151)
T cd00009 100 --------------AQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYD--RLDIRIVIP 150 (151)
T ss_pred --------------HHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHh--hhccEeecC
Confidence 23344444443322 46788888888776 67777777 898777775
No 153
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.03 E-value=4.6e-09 Score=109.52 Aligned_cols=191 Identities=22% Similarity=0.325 Sum_probs=127.1
Q ss_pred CccccccCccCchHHHHHHHHHHHhccccccccccCcccCCceEEECCCCCchhHHHHHhhhhc---cccEEEeecccee
Q 003795 412 GVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFV 488 (795)
Q Consensus 412 ~~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el---~~~~~~is~se~~ 488 (795)
...+.+++..|++..+..+.+-...|.. -.+..++||+|+.|||||+++|++..+. |..++.+...++.
T Consensus 21 ~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~--------G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L~ 92 (249)
T PF05673_consen 21 PDPIRLDDLIGIERQKEALIENTEQFLQ--------GLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDLG 92 (249)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHHc--------CCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHhc
Confidence 3567788999999999888776665532 1234559999999999999999999865 5567777655533
Q ss_pred hhhhccchhhHHhHHHHHHhc-CCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcc--cCCCcEEEEeccCC
Q 003795 489 EIYVGVGASRVRSLYQEAKDN-APSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGF--EGRGNVITIASTNR 565 (795)
Q Consensus 489 ~~~~g~~~~~l~~lf~~ar~~-~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~--~~~~~VlVIatTN~ 565 (795)
. +..+++..+.. ..-|||+|++- +- .+ ......|-..|+|- ....||+|.+|+|+
T Consensus 93 ~---------l~~l~~~l~~~~~kFIlf~DDLs-Fe---------~~---d~~yk~LKs~LeGgle~~P~NvliyATSNR 150 (249)
T PF05673_consen 93 D---------LPELLDLLRDRPYKFILFCDDLS-FE---------EG---DTEYKALKSVLEGGLEARPDNVLIYATSNR 150 (249)
T ss_pred c---------HHHHHHHHhcCCCCEEEEecCCC-CC---------CC---cHHHHHHHHHhcCccccCCCcEEEEEecch
Confidence 2 34466665543 34589999862 11 11 12445555666663 34578999999998
Q ss_pred CCCCCcccc---------------------CCCcccceecCCCCCHHHHHHHHHHHHccCCCCCh-hhH----HHHHhhC
Q 003795 566 PDILDPALV---------------------RPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADD-VDY----LAVASMT 619 (795)
Q Consensus 566 ~d~LdpaLl---------------------rpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~~~~~d-~dl----~~LA~~t 619 (795)
-..++..+. -..||+..|.|.+|+.++-.+|++.++....+.-+ .++ ...|..-
T Consensus 151 RHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~~Al~wa~~r 230 (249)
T PF05673_consen 151 RHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEELRQEALQWALRR 230 (249)
T ss_pred hhccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHc
Confidence 654432111 12399999999999999999999999976655433 111 2334445
Q ss_pred CCCcHHHHHHHHH
Q 003795 620 DGMVGAELANIVE 632 (795)
Q Consensus 620 ~G~sgadL~~lv~ 632 (795)
.|.||+-..+.++
T Consensus 231 g~RSGRtA~QF~~ 243 (249)
T PF05673_consen 231 GGRSGRTARQFID 243 (249)
T ss_pred CCCCHHHHHHHHH
Confidence 5566665555544
No 154
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.02 E-value=1e-09 Score=131.24 Aligned_cols=235 Identities=18% Similarity=0.180 Sum_probs=128.8
Q ss_pred hhhhhccccceeeeechhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchhhhhhhhhcCchHHHhhc
Q 003795 310 STVATGLGIVFFVIFYRTVVLNYRRQKKDYEDRLKIEKAEREERKKLRQLERELEGLEGADDEIEQGEAEQNPHLKMAMQ 389 (795)
Q Consensus 310 ~~~i~~l~~~~~l~~Ykgny~~y~~~~e~~e~~~~~ek~~e~~~~ei~~Lekele~~~~~~~~~~~~~~~~~~~~k~~v~ 389 (795)
++++..+ ..|++..|.|+|+.|..+++.. .......++.+++++++++..+++ . ..+. ..+. ..
T Consensus 220 ~d~i~~L-~~G~i~~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~-~~a~--~~~~---------~~ 283 (635)
T PRK11147 220 ATRIVDL-DRGKLVSYPGNYDQYLLEKEEA--LRVEELQNAEFDRKLAQEEVWIRQ-G-IKAR--RTRN---------EG 283 (635)
T ss_pred cCeEEEE-ECCEEEEecCCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHh-h-hhhh--hhhH---------HH
Confidence 5667777 6789989999999999877732 223334444445555555554443 1 0000 0000 00
Q ss_pred hhhhHHHHHHHhcCCCCcccccCccccccCccCchHHHHHHHHHHHhccccccccccCcccCCc--eEEECCCCCchhHH
Q 003795 390 FMKSGARVRRAYGKGLPQYLERGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLL 467 (795)
Q Consensus 390 ~~~~~~~vsr~tgipv~~~~~~~~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~~g--iLL~GPpGtGKTtL 467 (795)
..+..+.+... ... +........+.|+.....++.++.++++...|....++.++++.+..| +.|+||||+|||||
T Consensus 284 r~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTL 361 (635)
T PRK11147 284 RVRALKALRRE-RSE-RREVMGTAKMQVEEASRSGKIVFEMENVNYQIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTL 361 (635)
T ss_pred HHHHHHHhhhh-hcc-ccccCCceeEEeCCCCCCCCceEEEeeeEEEECCeEEEcCcEEEEcCCCEEEEECCCCCcHHHH
Confidence 00111111000 000 000012233444433334455667777777777667889999999988 89999999999999
Q ss_pred HHHhhhhccccEEEeecccee-hhhhccchhhH---HhHHHHHHhcCCcee---EhHHHHHHhhhccCC---------CC
Q 003795 468 AKAVAGEAGVNFFSISASQFV-EIYVGVGASRV---RSLYQEAKDNAPSVV---FIDELDAVGRERGLI---------KG 531 (795)
Q Consensus 468 akaLA~el~~~~~~is~se~~-~~~~g~~~~~l---~~lf~~ar~~~p~Il---~IDEID~l~~~r~~~---------~~ 531 (795)
+++|+|.+.+..+.+..+.-. -.|+.+....+ ..+++......+... .-.++..++...++. .=
T Consensus 362 lk~l~G~~~p~~G~i~~~~~~~i~y~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~L 441 (635)
T PRK11147 362 LKLMLGQLQADSGRIHCGTKLEVAYFDQHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKAL 441 (635)
T ss_pred HHHHhCCCCCCCcEEEECCCcEEEEEeCcccccCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCHHHHhChhhhC
Confidence 999999887766666553211 11333321101 123333222111100 012233333222221 12
Q ss_pred CCcchHHHHHHHHHHhhhcccCCCcEEEE-eccCCCCC
Q 003795 532 SGGQERDATLNQLLVCLDGFEGRGNVITI-ASTNRPDI 568 (795)
Q Consensus 532 Sgge~~r~~l~~LL~~ld~~~~~~~VlVI-atTN~~d~ 568 (795)
|||++.+..+..++ ...++++++ .+||+.|.
T Consensus 442 SgGekqRl~la~al------~~~p~lLlLDEPt~~LD~ 473 (635)
T PRK11147 442 SGGERNRLLLARLF------LKPSNLLILDEPTNDLDV 473 (635)
T ss_pred CHHHHHHHHHHHHH------hcCCCEEEEcCCCCCCCH
Confidence 89999999998887 556788888 89987763
No 155
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.01 E-value=3.3e-10 Score=113.40 Aligned_cols=110 Identities=33% Similarity=0.373 Sum_probs=74.2
Q ss_pred ceEEECCCCCchhHHHHHhhhhccc----cEEEeeccceehhhhccchhhHHhHHHH----HHhcCCceeEhHHHHHHhh
Q 003795 453 GILLCGPPGVGKTLLAKAVAGEAGV----NFFSISASQFVEIYVGVGASRVRSLYQE----AKDNAPSVVFIDELDAVGR 524 (795)
Q Consensus 453 giLL~GPpGtGKTtLakaLA~el~~----~~~~is~se~~~~~~g~~~~~l~~lf~~----ar~~~p~Il~IDEID~l~~ 524 (795)
.++|+||+|||||.++++||..+.. +++.++++++....- ....+..+... .......||+|||||++++
T Consensus 5 ~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~~~--~~~~~~~l~~~~~~~v~~~~~gVVllDEidKa~~ 82 (171)
T PF07724_consen 5 NFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEGDD--VESSVSKLLGSPPGYVGAEEGGVVLLDEIDKAHP 82 (171)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSHHH--CSCHCHHHHHHTTCHHHHHHHTEEEEETGGGCSH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccccch--HHhhhhhhhhcccceeeccchhhhhhHHHhhccc
Confidence 4899999999999999999999986 999999999877100 00011111111 1111223999999999987
Q ss_pred hccCCCCCCcchHHHHHHHHHHhhhcc---------cCCCcEEEEeccCCCC
Q 003795 525 ERGLIKGSGGQERDATLNQLLVCLDGF---------EGRGNVITIASTNRPD 567 (795)
Q Consensus 525 ~r~~~~~Sgge~~r~~l~~LL~~ld~~---------~~~~~VlVIatTN~~d 567 (795)
. .+.+.+.....+++.||+.+++- .+..++++|+|+|...
T Consensus 83 ~---~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~ 131 (171)
T PF07724_consen 83 S---NSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGA 131 (171)
T ss_dssp T---TTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSST
T ss_pred c---ccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEeccccc
Confidence 5 12233334446888888888752 2346899999999754
No 156
>PRK09087 hypothetical protein; Validated
Probab=99.00 E-value=1.6e-09 Score=113.23 Aligned_cols=168 Identities=18% Similarity=0.174 Sum_probs=109.5
Q ss_pred eEEECCCCCchhHHHHHhhhhccccEEEeeccceehhhhccchhhHHhHHHHHHhcCCceeEhHHHHHHhhhccCCCCCC
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSG 533 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el~~~~~~is~se~~~~~~g~~~~~l~~lf~~ar~~~p~Il~IDEID~l~~~r~~~~~Sg 533 (795)
++|+||+|+|||+|+++++...+.. +++...+... ++..... .+++||+++.+...
T Consensus 47 l~l~G~~GsGKThLl~~~~~~~~~~--~i~~~~~~~~-----------~~~~~~~---~~l~iDDi~~~~~~-------- 102 (226)
T PRK09087 47 VVLAGPVGSGKTHLASIWREKSDAL--LIHPNEIGSD-----------AANAAAE---GPVLIEDIDAGGFD-------- 102 (226)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCE--EecHHHcchH-----------HHHhhhc---CeEEEECCCCCCCC--------
Confidence 8999999999999999999875543 3333332221 1111111 47889999865211
Q ss_pred cchHHHHHHHHHHhhhcccCCCcEEEEeccCCCCC---CCccccCCCccc--ceecCCCCCHHHHHHHHHHHHccCCCC-
Q 003795 534 GQERDATLNQLLVCLDGFEGRGNVITIASTNRPDI---LDPALVRPGRFD--RKIFIPKPGLIGRMEILKVHARKKPMA- 607 (795)
Q Consensus 534 ge~~r~~l~~LL~~ld~~~~~~~VlVIatTN~~d~---LdpaLlrpgRFd--~~I~~~~Pd~~eR~~Il~~~l~~~~~~- 607 (795)
...|+..++.....+..+||+++..|.. ..|.|++ ||. .++.+.+|+.++|..|++.++....+.
T Consensus 103 -------~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~S--Rl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l 173 (226)
T PRK09087 103 -------ETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKS--RLKAATVVEIGEPDDALLSQVIFKLFADRQLYV 173 (226)
T ss_pred -------HHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHH--HHhCCceeecCCCCHHHHHHHHHHHHHHcCCCC
Confidence 1223333443344556677777665543 3678888 774 689999999999999999988766443
Q ss_pred ChhhHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Q 003795 608 DDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQ 656 (795)
Q Consensus 608 ~d~dl~~LA~~t~G~sgadL~~lv~~A~~~A~~~~~~~It~edl~~Al~ 656 (795)
++..+..|+.+.. -+.+.+..+++.....+...+ ..||...+.+++.
T Consensus 174 ~~ev~~~La~~~~-r~~~~l~~~l~~L~~~~~~~~-~~it~~~~~~~l~ 220 (226)
T PRK09087 174 DPHVVYYLVSRME-RSLFAAQTIVDRLDRLALERK-SRITRALAAEVLN 220 (226)
T ss_pred CHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHH
Confidence 3444677887776 345555565555554454444 4589998888875
No 157
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.99 E-value=3.1e-09 Score=107.64 Aligned_cols=145 Identities=23% Similarity=0.312 Sum_probs=98.9
Q ss_pred ccCCceEEECCCCCchhHHHHHhhhhcccc------------------------EEEeeccceehhhhccchhhHHhHHH
Q 003795 449 RIPGGILLCGPPGVGKTLLAKAVAGEAGVN------------------------FFSISASQFVEIYVGVGASRVRSLYQ 504 (795)
Q Consensus 449 ~i~~giLL~GPpGtGKTtLakaLA~el~~~------------------------~~~is~se~~~~~~g~~~~~l~~lf~ 504 (795)
+++..+||+||+|+|||++++.++..+... +..+....- ......++.+.+
T Consensus 12 ~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~-----~~~~~~i~~i~~ 86 (188)
T TIGR00678 12 RLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQ-----SIKVDQVRELVE 86 (188)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccC-----cCCHHHHHHHHH
Confidence 456679999999999999999999876321 111111100 011234455555
Q ss_pred HHHh----cCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcccCCCcEEEEeccCCCCCCCccccCCCccc
Q 003795 505 EAKD----NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFD 580 (795)
Q Consensus 505 ~ar~----~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVIatTN~~d~LdpaLlrpgRFd 580 (795)
.+.. ....|++|||+|.+... ..+.|+..++. ...++++|.+||.++.+.+++.+ |+.
T Consensus 87 ~~~~~~~~~~~kviiide~~~l~~~--------------~~~~Ll~~le~--~~~~~~~il~~~~~~~l~~~i~s--r~~ 148 (188)
T TIGR00678 87 FLSRTPQESGRRVVIIEDAERMNEA--------------AANALLKTLEE--PPPNTLFILITPSPEKLLPTIRS--RCQ 148 (188)
T ss_pred HHccCcccCCeEEEEEechhhhCHH--------------HHHHHHHHhcC--CCCCeEEEEEECChHhChHHHHh--hcE
Confidence 5543 23458999999998654 57788888884 34466677677777899999998 664
Q ss_pred ceecCCCCCHHHHHHHHHHHHccCCCCChhhHHHHHhhCCCC
Q 003795 581 RKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGM 622 (795)
Q Consensus 581 ~~I~~~~Pd~~eR~~Il~~~l~~~~~~~d~dl~~LA~~t~G~ 622 (795)
.+.|++|+.++..+++..+ .+ ++..+..++..+.|.
T Consensus 149 -~~~~~~~~~~~~~~~l~~~----gi-~~~~~~~i~~~~~g~ 184 (188)
T TIGR00678 149 -VLPFPPLSEEALLQWLIRQ----GI-SEEAAELLLALAGGS 184 (188)
T ss_pred -EeeCCCCCHHHHHHHHHHc----CC-CHHHHHHHHHHcCCC
Confidence 8999999999998888776 22 233466666666553
No 158
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.99 E-value=8.3e-09 Score=111.07 Aligned_cols=126 Identities=22% Similarity=0.279 Sum_probs=93.0
Q ss_pred CceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcccCCCcEEEEeccCC------------CCCCCccccCCCc
Q 003795 511 PSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNR------------PDILDPALVRPGR 578 (795)
Q Consensus 511 p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVIatTN~------------~d~LdpaLlrpgR 578 (795)
|+|+||||++.+--. .|..|-..|+. .-.. ++|.+||+ |.-||..|+. |
T Consensus 292 pGVLFIDEvHmLDIE--------------~FsFlnrAlEs--e~aP-Iii~AtNRG~~kiRGTd~~sPhGIP~DlLD--R 352 (450)
T COG1224 292 PGVLFIDEVHMLDIE--------------CFSFLNRALES--ELAP-IIILATNRGMTKIRGTDIESPHGIPLDLLD--R 352 (450)
T ss_pred cceEEEechhhhhHH--------------HHHHHHHHhhc--ccCc-EEEEEcCCceeeecccCCcCCCCCCHhhhh--h
Confidence 778999998877433 45555555552 2233 55666775 4567777777 6
Q ss_pred ccceecCCCCCHHHHHHHHHHHHccCCCC-ChhhHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Q 003795 579 FDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQ 656 (795)
Q Consensus 579 Fd~~I~~~~Pd~~eR~~Il~~~l~~~~~~-~d~dl~~LA~~t~G~sgadL~~lv~~A~~~A~~~~~~~It~edl~~Al~ 656 (795)
+- +|...+++.++..+|++..+....+. ++..++.|+.....-|-+-..+|+.-|...|.++++..|..+|+..|..
T Consensus 353 ll-II~t~py~~~EireIi~iRa~ee~i~l~~~Ale~L~~ig~etSLRYa~qLL~pa~iiA~~rg~~~V~~~dVe~a~~ 430 (450)
T COG1224 353 LL-IISTRPYSREEIREIIRIRAKEEDIELSDDALEYLTDIGEETSLRYAVQLLTPASIIAKRRGSKRVEVEDVERAKE 430 (450)
T ss_pred ee-EEecCCCCHHHHHHHHHHhhhhhccccCHHHHHHHHhhchhhhHHHHHHhccHHHHHHHHhCCCeeehhHHHHHHH
Confidence 53 67778899999999999988766543 3344677777777777777778888899999999999999999999966
No 159
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.97 E-value=1.1e-08 Score=109.05 Aligned_cols=187 Identities=13% Similarity=0.186 Sum_probs=113.3
Q ss_pred eEEECCCCCchhHHHHHhhhhcccc-EEE--eecc-----ceehh---hhccch------hhHHhHH----HHHHhcCCc
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEAGVN-FFS--ISAS-----QFVEI---YVGVGA------SRVRSLY----QEAKDNAPS 512 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el~~~-~~~--is~s-----e~~~~---~~g~~~------~~l~~lf----~~ar~~~p~ 512 (795)
++|+||+|+||||+++.+++.+... +.. +... ++... ..|... ..+..+. .......+.
T Consensus 46 ~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 125 (269)
T TIGR03015 46 ILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGKRA 125 (269)
T ss_pred EEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCCCe
Confidence 7899999999999999999987532 111 1111 11000 112110 0111222 222345567
Q ss_pred eeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcccCCCcEEEEecc--CCCCCCC----ccccCCCcccceecCC
Q 003795 513 VVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIAST--NRPDILD----PALVRPGRFDRKIFIP 586 (795)
Q Consensus 513 Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVIatT--N~~d~Ld----paLlrpgRFd~~I~~~ 586 (795)
+++|||++.+... ....+..+..... .....+.|+.+. ...+.+. ..+.+ |+...+.++
T Consensus 126 vliiDe~~~l~~~-----------~~~~l~~l~~~~~--~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~--r~~~~~~l~ 190 (269)
T TIGR03015 126 LLVVDEAQNLTPE-----------LLEELRMLSNFQT--DNAKLLQIFLVGQPEFRETLQSPQLQQLRQ--RIIASCHLG 190 (269)
T ss_pred EEEEECcccCCHH-----------HHHHHHHHhCccc--CCCCeEEEEEcCCHHHHHHHcCchhHHHHh--heeeeeeCC
Confidence 9999999887432 1112222221111 112223333332 2121221 12444 777788999
Q ss_pred CCCHHHHHHHHHHHHccCC-----CCChhhHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Q 003795 587 KPGLIGRMEILKVHARKKP-----MADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQ 656 (795)
Q Consensus 587 ~Pd~~eR~~Il~~~l~~~~-----~~~d~dl~~LA~~t~G~sgadL~~lv~~A~~~A~~~~~~~It~edl~~Al~ 656 (795)
+.+.++..+++...+.... ...+..+..+...+.|..+. |..+++.+...|...+...|+.+++..++.
T Consensus 191 ~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~-i~~l~~~~~~~a~~~~~~~i~~~~v~~~~~ 264 (269)
T TIGR03015 191 PLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRL-INILCDRLLLSAFLEEKREIGGEEVREVIA 264 (269)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccH-HHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 9999999999988876432 12345577889999988654 999999999999899999999999999875
No 160
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=98.96 E-value=3.1e-09 Score=117.25 Aligned_cols=128 Identities=33% Similarity=0.457 Sum_probs=89.8
Q ss_pred CceEEECCCCCchhHHHHHhhhhccccEEEeeccceehh--hhccchhhH------------HhHHHHHHhcCCceeEhH
Q 003795 452 GGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEI--YVGVGASRV------------RSLYQEAKDNAPSVVFID 517 (795)
Q Consensus 452 ~giLL~GPpGtGKTtLakaLA~el~~~~~~is~se~~~~--~~g~~~~~l------------~~lf~~ar~~~p~Il~ID 517 (795)
+.++|.||||||||+|++.+|..++.+++++.+...... .+|...-.. .-+|...+ +++++|
T Consensus 44 ~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~----~ill~D 119 (329)
T COG0714 44 GHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVR----VILLLD 119 (329)
T ss_pred CCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccc----eEEEEe
Confidence 348999999999999999999999999999999865543 111110000 11121111 399999
Q ss_pred HHHHHhhhccCCCCCCcchHHHHHHHHHHhhhc----------ccCCCcEEEEeccCC-----CCCCCccccCCCcccce
Q 003795 518 ELDAVGRERGLIKGSGGQERDATLNQLLVCLDG----------FEGRGNVITIASTNR-----PDILDPALVRPGRFDRK 582 (795)
Q Consensus 518 EID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~----------~~~~~~VlVIatTN~-----~d~LdpaLlrpgRFd~~ 582 (795)
||+...+. +.+.|+..|+. +.-...++||+|+|. ...+++++++ ||-..
T Consensus 120 EInra~p~--------------~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ld--Rf~~~ 183 (329)
T COG0714 120 EINRAPPE--------------VQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLD--RFLLR 183 (329)
T ss_pred ccccCCHH--------------HHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHh--hEEEE
Confidence 99887655 77777777765 223356888999994 4468999999 99889
Q ss_pred ecCCCCCHHH-HHHHHHH
Q 003795 583 IFIPKPGLIG-RMEILKV 599 (795)
Q Consensus 583 I~~~~Pd~~e-R~~Il~~ 599 (795)
++++.|+.++ ...++..
T Consensus 184 ~~v~yp~~~~e~~~i~~~ 201 (329)
T COG0714 184 IYVDYPDSEEEERIILAR 201 (329)
T ss_pred EecCCCCchHHHHHHHHh
Confidence 9999995444 4444443
No 161
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.96 E-value=6.3e-09 Score=122.98 Aligned_cols=186 Identities=21% Similarity=0.231 Sum_probs=122.5
Q ss_pred CceEEECCCCCchhHHHHHhhhhccc--cEEEeeccceehhhhccchhhHHhHHHH---------HHhcCCceeEhHHHH
Q 003795 452 GGILLCGPPGVGKTLLAKAVAGEAGV--NFFSISASQFVEIYVGVGASRVRSLYQE---------AKDNAPSVVFIDELD 520 (795)
Q Consensus 452 ~giLL~GPpGtGKTtLakaLA~el~~--~~~~is~se~~~~~~g~~~~~l~~lf~~---------ar~~~p~Il~IDEID 520 (795)
++|||.|++|||||+++++|+..++. +|+.+..+......+|.. .+...+.. ......+++|+|||+
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~i--dl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~ 94 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGI--DVEESLAGGQRVTQPGLLDEAPRGVLYVDMAN 94 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccch--hhhhhhhcCcccCCCCCeeeCCCCcEeccchh
Confidence 46999999999999999999997754 588777533223233321 00000000 001223589999999
Q ss_pred HHhhhccCCCCCCcchHHHHHHHHHHhhhccc-----------CCCcEEEEeccCCCC---CCCccccCCCcccceecCC
Q 003795 521 AVGRERGLIKGSGGQERDATLNQLLVCLDGFE-----------GRGNVITIASTNRPD---ILDPALVRPGRFDRKIFIP 586 (795)
Q Consensus 521 ~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~-----------~~~~VlVIatTN~~d---~LdpaLlrpgRFd~~I~~~ 586 (795)
.+.+. +++.|+..|+.-. ...++.||+|+|..+ .++++|+. ||+.+|.+.
T Consensus 95 rl~~~--------------~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~Lld--Rf~l~v~~~ 158 (589)
T TIGR02031 95 LLDDG--------------LSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLD--RLALHVSLE 158 (589)
T ss_pred hCCHH--------------HHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHH--hccCeeecC
Confidence 98665 7777877776321 124688999999865 68899999 999887775
Q ss_pred -CCCHHHHHHHHHHHHccC-------------------------CCCChhhHHHHHhh--CCCCc-HHHHHHHHHHHHHH
Q 003795 587 -KPGLIGRMEILKVHARKK-------------------------PMADDVDYLAVASM--TDGMV-GAELANIVEVAAIN 637 (795)
Q Consensus 587 -~Pd~~eR~~Il~~~l~~~-------------------------~~~~d~dl~~LA~~--t~G~s-gadL~~lv~~A~~~ 637 (795)
.|+..+|.+|++..+... .+ ++..+..++.. ..|.+ .+.-..+++.|...
T Consensus 159 ~~~~~~er~eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i-~~~~~~~l~~~~~~~gv~s~Ra~i~~~r~ArA~ 237 (589)
T TIGR02031 159 DVASQDLRVEIVRRERCNEVFRMNDELELLRGQIEAARELLPQVTI-SAEQVKELVLTAASLGISGHRADLFAVRAAKAH 237 (589)
T ss_pred CCCCHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccC-CHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHH
Confidence 467778899888754211 11 11112222221 22333 33334778888889
Q ss_pred HHHcCCCccCHHHHHHHHH
Q 003795 638 MMRDGRTEITTDDLLQAAQ 656 (795)
Q Consensus 638 A~~~~~~~It~edl~~Al~ 656 (795)
|..+++..|+.+|+..|+.
T Consensus 238 Aal~gr~~V~~~Dv~~a~~ 256 (589)
T TIGR02031 238 AALHGRTEVTEEDLKLAVE 256 (589)
T ss_pred HHHhCCCCCCHHHHHHHHH
Confidence 9999999999999999988
No 162
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.94 E-value=1e-08 Score=119.60 Aligned_cols=188 Identities=16% Similarity=0.146 Sum_probs=118.3
Q ss_pred ceEEECCCCCchhHHHHHhhhhccccEEEe----eccceehhhhcc-chhhHHhHHH--HHHhcCCceeEhHHHHHHhhh
Q 003795 453 GILLCGPPGVGKTLLAKAVAGEAGVNFFSI----SASQFVEIYVGV-GASRVRSLYQ--EAKDNAPSVVFIDELDAVGRE 525 (795)
Q Consensus 453 giLL~GPpGtGKTtLakaLA~el~~~~~~i----s~se~~~~~~g~-~~~~l~~lf~--~ar~~~p~Il~IDEID~l~~~ 525 (795)
.+||+|+||+|||++|++++.......+.. ++..+....... ..+.. .++ .......++++|||++.+...
T Consensus 238 ~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~--~~~~G~l~~A~~Gil~iDEi~~l~~~ 315 (509)
T smart00350 238 NILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTRDPETREF--TLEGGALVLADNGVCCIDEFDKMDDS 315 (509)
T ss_pred eEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccceEccCcceE--EecCccEEecCCCEEEEechhhCCHH
Confidence 499999999999999999998765432211 111111100000 00000 000 001123468999999998554
Q ss_pred ccCCCCCCcchHHHHHHHHHHhhhccc-----------CCCcEEEEeccCCCC-------------CCCccccCCCcccc
Q 003795 526 RGLIKGSGGQERDATLNQLLVCLDGFE-----------GRGNVITIASTNRPD-------------ILDPALVRPGRFDR 581 (795)
Q Consensus 526 r~~~~~Sgge~~r~~l~~LL~~ld~~~-----------~~~~VlVIatTN~~d-------------~LdpaLlrpgRFd~ 581 (795)
....|+..|+.-. -+.++.||+|+|... .+++++++ |||.
T Consensus 316 --------------~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLs--RFdL 379 (509)
T smart00350 316 --------------DRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIGGRYDPKLTPEENIDLPAPILS--RFDL 379 (509)
T ss_pred --------------HHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCCCcccCCCcChhhccCCChHHhC--ceee
Confidence 4555666554311 125688999999753 58999999 9998
Q ss_pred eecC-CCCCHHHHHHHHHHHHccCC-----------------------------C---CChhhHHHHH-----hh-----
Q 003795 582 KIFI-PKPGLIGRMEILKVHARKKP-----------------------------M---ADDVDYLAVA-----SM----- 618 (795)
Q Consensus 582 ~I~~-~~Pd~~eR~~Il~~~l~~~~-----------------------------~---~~d~dl~~LA-----~~----- 618 (795)
.+.+ +.|+.+...+|.++.+.... . .++.....+. .+
T Consensus 380 i~~~~d~~~~~~d~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~yi~~ar~~~~P~ls~~~~~~i~~~y~~~R~~~~~ 459 (509)
T smart00350 380 LFVVLDEVDEERDRELAKHVVDLHRYSHPEPDEADEVPISQEFLRKYIAYAREKIKPKLSEEAAEKLVKAYVDLRKEDSQ 459 (509)
T ss_pred EEEecCCCChHHHHHHHHHHHHhhcccCccccccccccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhcccccc
Confidence 6554 68999988888876432110 0 0110011111 11
Q ss_pred -----CCCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHH
Q 003795 619 -----TDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIE 658 (795)
Q Consensus 619 -----t~G~sgadL~~lv~~A~~~A~~~~~~~It~edl~~Al~~~ 658 (795)
..+.|.+.+..+++-|...|..+++..|+.+|+..|+...
T Consensus 460 ~~~~~~~~~t~R~l~sliRla~A~A~l~~r~~V~~~Dv~~ai~l~ 504 (509)
T smart00350 460 SEARSSIPITVRQLESIIRLSEAHAKMRLSDVVEEADVEEAIRLL 504 (509)
T ss_pred cccccccCcCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHH
Confidence 2356889999999999999999999999999999998754
No 163
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=98.94 E-value=7.4e-09 Score=123.60 Aligned_cols=187 Identities=21% Similarity=0.270 Sum_probs=118.0
Q ss_pred CceEEECCCCCchhHHHHHhhhhcc-----------------------------------ccEEEeeccceehhhhccch
Q 003795 452 GGILLCGPPGVGKTLLAKAVAGEAG-----------------------------------VNFFSISASQFVEIYVGVGA 496 (795)
Q Consensus 452 ~giLL~GPpGtGKTtLakaLA~el~-----------------------------------~~~~~is~se~~~~~~g~~~ 496 (795)
+|++|.|++|||||+++++|+..+. .+|+.+.++......+|...
T Consensus 26 g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d 105 (633)
T TIGR02442 26 GGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEEWCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLD 105 (633)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccccChhhhhcccccccCCCCeeeCCCCCcHHHcCCccc
Confidence 4599999999999999999998772 34444443322222222110
Q ss_pred hhHHhHHHH---------HHhcCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcc-----------cCCCc
Q 003795 497 SRVRSLYQE---------AKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGF-----------EGRGN 556 (795)
Q Consensus 497 ~~l~~lf~~---------ar~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~-----------~~~~~ 556 (795)
+...+.. ......+++|||||+.+... +++.|+..|+.- ....+
T Consensus 106 --~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~~~--------------~q~~Ll~~le~g~~~v~r~g~~~~~~~~ 169 (633)
T TIGR02442 106 --IERALREGEKAFQPGLLAEAHRGILYIDEVNLLDDH--------------LVDVLLDAAAMGVNRVEREGLSVSHPAR 169 (633)
T ss_pred --HHHHhhcCCeeecCcceeecCCCeEEeChhhhCCHH--------------HHHHHHHHHhcCCEEEEECCceeeecCC
Confidence 0000100 00113359999999998655 777888777632 11246
Q ss_pred EEEEeccCCC-CCCCccccCCCcccceecCCCCC-HHHHHHHHHHHHccC------------------------------
Q 003795 557 VITIASTNRP-DILDPALVRPGRFDRKIFIPKPG-LIGRMEILKVHARKK------------------------------ 604 (795)
Q Consensus 557 VlVIatTN~~-d~LdpaLlrpgRFd~~I~~~~Pd-~~eR~~Il~~~l~~~------------------------------ 604 (795)
+++|+|+|.. ..+.++|+. ||+..|.++.|. .+++.+|++..+...
T Consensus 170 ~~lIat~np~eg~l~~~L~d--R~~l~i~v~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~~~~ 247 (633)
T TIGR02442 170 FVLIGTMNPEEGDLRPQLLD--RFGLCVDVAAPRDPEERVEIIRRRLAFDADPEAFAARWAAEQEELRNRIARARSLLPS 247 (633)
T ss_pred eEEEEecCCCCCCCCHHHHh--hcceEEEccCCCchHHHHHHHHHHHhhccCcHHHHHHhhhhHHHHHHHHHHHHHhCCC
Confidence 8999999964 358889998 999889888764 567777776532200
Q ss_pred CCCChhhHHHHHhhC--CCC-cHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Q 003795 605 PMADDVDYLAVASMT--DGM-VGAELANIVEVAAINMMRDGRTEITTDDLLQAAQ 656 (795)
Q Consensus 605 ~~~~d~dl~~LA~~t--~G~-sgadL~~lv~~A~~~A~~~~~~~It~edl~~Al~ 656 (795)
...++..+..++..+ .|. +.+....+++.|...|...++..|+.+|+..|+.
T Consensus 248 V~is~~~~~~l~~~~~~~~i~s~Ra~i~~~r~Ara~AaL~gr~~V~~~Dv~~A~~ 302 (633)
T TIGR02442 248 VRISDSLIRFISELCIEFGVDGHRADIVMARAARALAALDGRRRVTAEDVREAAE 302 (633)
T ss_pred CCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH
Confidence 000111122222221 233 3444457888888899999999999999999988
No 164
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.91 E-value=1.3e-08 Score=113.50 Aligned_cols=181 Identities=20% Similarity=0.225 Sum_probs=118.1
Q ss_pred ccccccCccCchHHHHHHHHHHHhccccccccccCcccCCceEEECCCCCchhHHHHHhhhhccccE----E-------E
Q 003795 413 VDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNF----F-------S 481 (795)
Q Consensus 413 ~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el~~~~----~-------~ 481 (795)
.+..++++.|.+..+..+.+.+.. -++|.++||+||+|+||+++|.++|..+-..- . .
T Consensus 14 ~P~~~~~iiGq~~~~~~L~~~~~~-----------~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~ 82 (365)
T PRK07471 14 HPRETTALFGHAAAEAALLDAYRS-----------GRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTS 82 (365)
T ss_pred CCCchhhccChHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCcccccccc
Confidence 456778888888888777665542 25677799999999999999999998652110 0 0
Q ss_pred ee-cc--------------ceehhhh---cc--------chhhHHhHHHHHH----hcCCceeEhHHHHHHhhhccCCCC
Q 003795 482 IS-AS--------------QFVEIYV---GV--------GASRVRSLYQEAK----DNAPSVVFIDELDAVGRERGLIKG 531 (795)
Q Consensus 482 is-~s--------------e~~~~~~---g~--------~~~~l~~lf~~ar----~~~p~Il~IDEID~l~~~r~~~~~ 531 (795)
+. ++ ++..... +. ....++.+.+.+. ...+.|++|||+|.+...
T Consensus 83 l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~------ 156 (365)
T PRK07471 83 LAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNAN------ 156 (365)
T ss_pred ccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHH------
Confidence 00 00 0000000 00 1122344444332 245679999999988654
Q ss_pred CCcchHHHHHHHHHHhhhcccCCCcEEEEeccCCCCCCCccccCCCcccceecCCCCCHHHHHHHHHHHHccCCCCChhh
Q 003795 532 SGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVD 611 (795)
Q Consensus 532 Sgge~~r~~l~~LL~~ld~~~~~~~VlVIatTN~~d~LdpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~~~~~d~d 611 (795)
..+.|+..++ ....++++|.+|+.++.+.|.+++ |+. .+.|++|+.++-.+++...... ..+..
T Consensus 157 --------aanaLLK~LE--epp~~~~~IL~t~~~~~llpti~S--Rc~-~i~l~~l~~~~i~~~L~~~~~~---~~~~~ 220 (365)
T PRK07471 157 --------AANALLKVLE--EPPARSLFLLVSHAPARLLPTIRS--RCR-KLRLRPLAPEDVIDALAAAGPD---LPDDP 220 (365)
T ss_pred --------HHHHHHHHHh--cCCCCeEEEEEECCchhchHHhhc--cce-EEECCCCCHHHHHHHHHHhccc---CCHHH
Confidence 7889998888 455677888888889899999988 654 8999999999999888875421 12222
Q ss_pred HHHHHhhCCCCcHHH
Q 003795 612 YLAVASMTDGMVGAE 626 (795)
Q Consensus 612 l~~LA~~t~G~sgad 626 (795)
+..++..+.|..+.-
T Consensus 221 ~~~l~~~s~Gsp~~A 235 (365)
T PRK07471 221 RAALAALAEGSVGRA 235 (365)
T ss_pred HHHHHHHcCCCHHHH
Confidence 345666676654433
No 165
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.91 E-value=2.9e-09 Score=99.16 Aligned_cols=122 Identities=34% Similarity=0.451 Sum_probs=78.3
Q ss_pred CceEEECCCCCchhHHHHHhhhhcccc---EEEeeccceehhh--------------hccchhhHHhHHHHHHhcCCcee
Q 003795 452 GGILLCGPPGVGKTLLAKAVAGEAGVN---FFSISASQFVEIY--------------VGVGASRVRSLYQEAKDNAPSVV 514 (795)
Q Consensus 452 ~giLL~GPpGtGKTtLakaLA~el~~~---~~~is~se~~~~~--------------~g~~~~~l~~lf~~ar~~~p~Il 514 (795)
..++|+||||||||++++.||..+... ++.++++...... ..........+++.+....++++
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi 82 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVL 82 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 348999999999999999999988765 7777776543321 11223345667778887778999
Q ss_pred EhHHHHHHhhhccCCCCCCcchHHHHHHHHHH-----hhhcccCCCcEEEEeccCC-CCCCCccccCCCcccceecCCCC
Q 003795 515 FIDELDAVGRERGLIKGSGGQERDATLNQLLV-----CLDGFEGRGNVITIASTNR-PDILDPALVRPGRFDRKIFIPKP 588 (795)
Q Consensus 515 ~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~-----~ld~~~~~~~VlVIatTN~-~d~LdpaLlrpgRFd~~I~~~~P 588 (795)
++||++.+..... ...... .........+..+|+++|. ....+..+.+ |++..+.+..+
T Consensus 83 iiDei~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 147 (148)
T smart00382 83 ILDEITSLLDAEQ-------------EALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLRR--RFDRRIVLLLI 147 (148)
T ss_pred EEECCcccCCHHH-------------HHHHHhhhhhHHHHHHHhcCCCEEEEEeCCCccCchhhhhh--ccceEEEecCC
Confidence 9999988754421 111100 0111123456788888886 3333444444 78888777654
No 166
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.91 E-value=7.7e-09 Score=113.89 Aligned_cols=153 Identities=24% Similarity=0.352 Sum_probs=105.6
Q ss_pred cccCCceEEECCCCCchhHHHHHhhhhccc------------------------cEEEeeccceehhhhccchhhHHhHH
Q 003795 448 VRIPGGILLCGPPGVGKTLLAKAVAGEAGV------------------------NFFSISASQFVEIYVGVGASRVRSLY 503 (795)
Q Consensus 448 l~i~~giLL~GPpGtGKTtLakaLA~el~~------------------------~~~~is~se~~~~~~g~~~~~l~~lf 503 (795)
-+++.++||+||+|+|||++|+.+|..+.. ++..+...+-. . .-....++.+.
T Consensus 19 ~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~-~--~i~id~iR~l~ 95 (328)
T PRK05707 19 GRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEAD-K--TIKVDQVRELV 95 (328)
T ss_pred CCcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCC-C--CCCHHHHHHHH
Confidence 456777999999999999999999986632 22222221100 0 01223456665
Q ss_pred HHHHh----cCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcccCCCcEEEEeccCCCCCCCccccCCCcc
Q 003795 504 QEAKD----NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRF 579 (795)
Q Consensus 504 ~~ar~----~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVIatTN~~d~LdpaLlrpgRF 579 (795)
+.+.. ....|++||++|.+... ..|.||..++ .+..++++|.+|+.++.+.|.+++ |.
T Consensus 96 ~~~~~~~~~~~~kv~iI~~a~~m~~~--------------aaNaLLK~LE--EPp~~~~fiL~t~~~~~ll~TI~S--Rc 157 (328)
T PRK05707 96 SFVVQTAQLGGRKVVLIEPAEAMNRN--------------AANALLKSLE--EPSGDTVLLLISHQPSRLLPTIKS--RC 157 (328)
T ss_pred HHHhhccccCCCeEEEECChhhCCHH--------------HHHHHHHHHh--CCCCCeEEEEEECChhhCcHHHHh--hc
Confidence 55543 33568999999998655 7899999999 556788999999999999999999 66
Q ss_pred cceecCCCCCHHHHHHHHHHHHccCCCCChhhHHHHHhhCCCCcHH
Q 003795 580 DRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGA 625 (795)
Q Consensus 580 d~~I~~~~Pd~~eR~~Il~~~l~~~~~~~d~dl~~LA~~t~G~sga 625 (795)
. .+.|++|+.++-...+..... ...+.+...++..+.|-.+.
T Consensus 158 ~-~~~~~~~~~~~~~~~L~~~~~---~~~~~~~~~~l~la~Gsp~~ 199 (328)
T PRK05707 158 Q-QQACPLPSNEESLQWLQQALP---ESDERERIELLTLAGGSPLR 199 (328)
T ss_pred e-eeeCCCcCHHHHHHHHHHhcc---cCChHHHHHHHHHcCCCHHH
Confidence 5 699999999988888775532 12233344556666664443
No 167
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.89 E-value=8.6e-10 Score=105.85 Aligned_cols=109 Identities=32% Similarity=0.467 Sum_probs=71.4
Q ss_pred ceEEECCCCCchhHHHHHhhhhccccEEEeeccceehh--hhccch---hhH----HhHHHHHHhcCCceeEhHHHHHHh
Q 003795 453 GILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEI--YVGVGA---SRV----RSLYQEAKDNAPSVVFIDELDAVG 523 (795)
Q Consensus 453 giLL~GPpGtGKTtLakaLA~el~~~~~~is~se~~~~--~~g~~~---~~l----~~lf~~ar~~~p~Il~IDEID~l~ 523 (795)
+|+|+||||||||+|++.+|..++.++..+.++...+. ..|.-. ... ..+.+.++ .+++++|||++...
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~--~~~il~lDEin~a~ 78 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMR--KGGILVLDEINRAP 78 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHH--EEEEEEESSCGG--
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeeccccccccccccccccc--ceeEEEECCcccCC
Confidence 37999999999999999999999999999988775443 111110 000 01111111 46799999998875
Q ss_pred hhccCCCCCCcchHHHHHHHHHHhhhccc-----------CCC------cEEEEeccCCCC----CCCccccCCCcc
Q 003795 524 RERGLIKGSGGQERDATLNQLLVCLDGFE-----------GRG------NVITIASTNRPD----ILDPALVRPGRF 579 (795)
Q Consensus 524 ~~r~~~~~Sgge~~r~~l~~LL~~ld~~~-----------~~~------~VlVIatTN~~d----~LdpaLlrpgRF 579 (795)
+. ++..|+..++.-. ... ++.+|+|+|..+ .++++|++ ||
T Consensus 79 ~~--------------v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~--Rf 139 (139)
T PF07728_consen 79 PE--------------VLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLD--RF 139 (139)
T ss_dssp HH--------------HHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHT--T-
T ss_pred HH--------------HHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHh--hC
Confidence 43 6666666555411 111 489999999998 89999998 87
No 168
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.89 E-value=1.6e-08 Score=110.80 Aligned_cols=172 Identities=16% Similarity=0.255 Sum_probs=114.9
Q ss_pred cccCccCchHHHHHHHHHHHhccccccccccCcccCCceEEECCCCCchhHHHHHhhhhccc--------cEEEeeccce
Q 003795 416 KFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGV--------NFFSISASQF 487 (795)
Q Consensus 416 ~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el~~--------~~~~is~se~ 487 (795)
.|+++.|.+..+..+...+.. -+++..++|+||+|+|||++|+.+|..+-+ ++..+...+-
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~-----------~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~ 70 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIK-----------NRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINK 70 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHc-----------CCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccC
Confidence 477888888877666665531 245566899999999999999999986522 2222322110
Q ss_pred ehhhhccchhhHHhHHHHHHh----cCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcccCCCcEEEEecc
Q 003795 488 VEIYVGVGASRVRSLYQEAKD----NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIAST 563 (795)
Q Consensus 488 ~~~~~g~~~~~l~~lf~~ar~----~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVIatT 563 (795)
.. -....++.+.+.+.. ....|++||++|.+... ..|.|+..++ ....++++|.+|
T Consensus 71 ~~----i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~~~--------------a~naLLK~LE--epp~~t~~il~~ 130 (313)
T PRK05564 71 KS----IGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMTEQ--------------AQNAFLKTIE--EPPKGVFIILLC 130 (313)
T ss_pred CC----CCHHHHHHHHHHHhcCcccCCceEEEEechhhcCHH--------------HHHHHHHHhc--CCCCCeEEEEEe
Confidence 00 112235555554432 23459999999888554 7889999999 455677777777
Q ss_pred CCCCCCCccccCCCcccceecCCCCCHHHHHHHHHHHHccCCCCChhhHHHHHhhCCCCcH
Q 003795 564 NRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVG 624 (795)
Q Consensus 564 N~~d~LdpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~~~~~d~dl~~LA~~t~G~sg 624 (795)
+.++.+.|.+++ |.. .+.|++|+.++....+...+.. .+......++..+.|..+
T Consensus 131 ~~~~~ll~TI~S--Rc~-~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~l~~~~~g~~~ 185 (313)
T PRK05564 131 ENLEQILDTIKS--RCQ-IYKLNRLSKEEIEKFISYKYND---IKEEEKKSAIAFSDGIPG 185 (313)
T ss_pred CChHhCcHHHHh--hce-eeeCCCcCHHHHHHHHHHHhcC---CCHHHHHHHHHHcCCCHH
Confidence 888999999998 553 8999999999988877765531 223335556666665433
No 169
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.88 E-value=1.8e-08 Score=111.97 Aligned_cols=183 Identities=17% Similarity=0.156 Sum_probs=116.1
Q ss_pred ccccccCccCchHHHHHHHHHHHhccccccccccCcccCCceEEECCCCCchhHHHHHhhhhccc-------cEEEe-ec
Q 003795 413 VDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGV-------NFFSI-SA 484 (795)
Q Consensus 413 ~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el~~-------~~~~i-s~ 484 (795)
.+..+..+.|.+.++..+..++.. -++|..++|+||+|+||||+++.+|..+.. +.... .+
T Consensus 18 ~P~~~~~l~Gh~~a~~~L~~a~~~-----------grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~ 86 (351)
T PRK09112 18 SPSENTRLFGHEEAEAFLAQAYRE-----------GKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPD 86 (351)
T ss_pred CCCchhhccCcHHHHHHHHHHHHc-----------CCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCC
Confidence 345677788888887766665542 245667999999999999999999987643 11100 01
Q ss_pred cc---eehh---------hhc----c---------chhhHHhHHHHHH----hcCCceeEhHHHHHHhhhccCCCCCCcc
Q 003795 485 SQ---FVEI---------YVG----V---------GASRVRSLYQEAK----DNAPSVVFIDELDAVGRERGLIKGSGGQ 535 (795)
Q Consensus 485 se---~~~~---------~~g----~---------~~~~l~~lf~~ar----~~~p~Il~IDEID~l~~~r~~~~~Sgge 535 (795)
+. .... ++. . ....++.+.+... .....|++|||+|.+...
T Consensus 87 ~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~---------- 156 (351)
T PRK09112 87 PASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRN---------- 156 (351)
T ss_pred CCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHH----------
Confidence 00 0000 000 0 0122333333322 234569999999998654
Q ss_pred hHHHHHHHHHHhhhcccCCCcEEEEeccCCCCCCCccccCCCcccceecCCCCCHHHHHHHHHHHHccCCCCChhhHHHH
Q 003795 536 ERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAV 615 (795)
Q Consensus 536 ~~r~~l~~LL~~ld~~~~~~~VlVIatTN~~d~LdpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~~~~~d~dl~~L 615 (795)
..+.||..++. ...++++|..|+.++.+.|.+++ |+ ..+.|++|+.++...++........ .++.....+
T Consensus 157 ----aanaLLk~LEE--pp~~~~fiLit~~~~~llptIrS--Rc-~~i~l~pl~~~~~~~~L~~~~~~~~-~~~~~~~~i 226 (351)
T PRK09112 157 ----AANAILKTLEE--PPARALFILISHSSGRLLPTIRS--RC-QPISLKPLDDDELKKALSHLGSSQG-SDGEITEAL 226 (351)
T ss_pred ----HHHHHHHHHhc--CCCCceEEEEECChhhccHHHHh--hc-cEEEecCCCHHHHHHHHHHhhcccC-CCHHHHHHH
Confidence 67889988884 44566666667778888899988 76 4999999999999999987432222 123335566
Q ss_pred HhhCCCCcHHH
Q 003795 616 ASMTDGMVGAE 626 (795)
Q Consensus 616 A~~t~G~sgad 626 (795)
+..+.|..+.-
T Consensus 227 ~~~s~G~pr~A 237 (351)
T PRK09112 227 LQRSKGSVRKA 237 (351)
T ss_pred HHHcCCCHHHH
Confidence 66666544433
No 170
>PHA02244 ATPase-like protein
Probab=98.88 E-value=8.4e-08 Score=105.89 Aligned_cols=123 Identities=22% Similarity=0.312 Sum_probs=81.4
Q ss_pred ceEEECCCCCchhHHHHHhhhhccccEEEeeccceehh--hhcc--chhhH--HhHHHHHHhcCCceeEhHHHHHHhhhc
Q 003795 453 GILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEI--YVGV--GASRV--RSLYQEAKDNAPSVVFIDELDAVGRER 526 (795)
Q Consensus 453 giLL~GPpGtGKTtLakaLA~el~~~~~~is~se~~~~--~~g~--~~~~l--~~lf~~ar~~~p~Il~IDEID~l~~~r 526 (795)
.++|+||||||||+||++||..++.+++.++.. ... ..|. ....+ ..++..+ ..+++++|||++.+.+.
T Consensus 121 PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l--~d~~~L~G~i~~~g~~~dgpLl~A~--~~GgvLiLDEId~a~p~- 195 (383)
T PHA02244 121 PVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAI--MDEFELKGFIDANGKFHETPFYEAF--KKGGLFFIDEIDASIPE- 195 (383)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCCEEEEecC--hHHHhhcccccccccccchHHHHHh--hcCCEEEEeCcCcCCHH-
Confidence 489999999999999999999999999988742 111 1110 00111 1233332 24579999999887554
Q ss_pred cCCCCCCcchHHHHHHHHHHhhhc---------ccCCCcEEEEeccCCC-----------CCCCccccCCCcccceecCC
Q 003795 527 GLIKGSGGQERDATLNQLLVCLDG---------FEGRGNVITIASTNRP-----------DILDPALVRPGRFDRKIFIP 586 (795)
Q Consensus 527 ~~~~~Sgge~~r~~l~~LL~~ld~---------~~~~~~VlVIatTN~~-----------d~LdpaLlrpgRFd~~I~~~ 586 (795)
++..|...++. .....++.+|+|+|.+ ..+++++++ ||- .|+++
T Consensus 196 -------------vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllD--RFv-~I~~d 259 (383)
T PHA02244 196 -------------ALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLD--RFA-PIEFD 259 (383)
T ss_pred -------------HHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHh--hcE-EeeCC
Confidence 34444444431 1234678999999973 467899998 996 78999
Q ss_pred CCCHHHHHHHH
Q 003795 587 KPGLIGRMEIL 597 (795)
Q Consensus 587 ~Pd~~eR~~Il 597 (795)
.|+ +....|+
T Consensus 260 yp~-~~E~~i~ 269 (383)
T PHA02244 260 YDE-KIEHLIS 269 (383)
T ss_pred CCc-HHHHHHh
Confidence 987 3333444
No 171
>PRK13531 regulatory ATPase RavA; Provisional
Probab=98.83 E-value=2.4e-08 Score=113.56 Aligned_cols=186 Identities=19% Similarity=0.255 Sum_probs=110.1
Q ss_pred CceEEECCCCCchhHHHHHhhhhccc--cEEEeecc-ceehhhhccc-hhhH--HhHHHHHHhc---CCceeEhHHHHHH
Q 003795 452 GGILLCGPPGVGKTLLAKAVAGEAGV--NFFSISAS-QFVEIYVGVG-ASRV--RSLYQEAKDN---APSVVFIDELDAV 522 (795)
Q Consensus 452 ~giLL~GPpGtGKTtLakaLA~el~~--~~~~is~s-e~~~~~~g~~-~~~l--~~lf~~ar~~---~p~Il~IDEID~l 522 (795)
+.++|.||||||||++|++|+...+. +|..+.+. ......+|.. .... ..-|...... ...++|+|||..+
T Consensus 40 ~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~ra 119 (498)
T PRK13531 40 ESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKDEGRYQRLTSGYLPEAEIVFLDEIWKA 119 (498)
T ss_pred CCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcHHHhhhhhcCchhhhcCCccccccEEeecccccC
Confidence 34899999999999999999986643 33332221 0111222211 0000 1112211111 2348999999876
Q ss_pred hhhccCCCCCCcchHHHHHHHHHHhhhccc--------CCCcEEEEeccCCCCC---CCccccCCCcccceecCCCCC-H
Q 003795 523 GRERGLIKGSGGQERDATLNQLLVCLDGFE--------GRGNVITIASTNRPDI---LDPALVRPGRFDRKIFIPKPG-L 590 (795)
Q Consensus 523 ~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~--------~~~~VlVIatTN~~d~---LdpaLlrpgRFd~~I~~~~Pd-~ 590 (795)
.+. +++.||..|..-. .-..-++++|||.+.. ..+++.. ||-..+.+++|+ .
T Consensus 120 sp~--------------~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~LPE~g~~leAL~D--RFliri~vp~l~~~ 183 (498)
T PRK13531 120 GPA--------------ILNTLLTAINERRFRNGAHEEKIPMRLLVTASNELPEADSSLEALYD--RMLIRLWLDKVQDK 183 (498)
T ss_pred CHH--------------HHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCCCcccCCchHHhHh--hEEEEEECCCCCch
Confidence 554 7888888884311 1112344555574322 3347888 998889999997 4
Q ss_pred HHHHHHHHHHHcc--CCC-----CChhh--------------------HHHHHhh---C---CCCcHHHHHHHHHHHHHH
Q 003795 591 IGRMEILKVHARK--KPM-----ADDVD--------------------YLAVASM---T---DGMVGAELANIVEVAAIN 637 (795)
Q Consensus 591 ~eR~~Il~~~l~~--~~~-----~~d~d--------------------l~~LA~~---t---~G~sgadL~~lv~~A~~~ 637 (795)
++..+|+...... ... ....+ +..|... + ...|++--..+++.|...
T Consensus 184 ~~e~~lL~~~~~~~~~~~~~~~vis~eel~~lq~~v~~V~v~d~v~eyI~~L~~~lr~~r~~~~~SpR~~~~l~~~akA~ 263 (498)
T PRK13531 184 ANFRSMLTSQQDENDNPVPASLQITDEEYQQWQKEIGKITLPDHVFELIFQLRQQLDALPNAPYVSDRRWKKAIRLLQAS 263 (498)
T ss_pred HHHHHHHHcccccccCCCcccCCCCHHHHHHHHHHhcceeCCHHHHHHHHHHHHHHhcCCCCCCcCcHHHHHHHHHHHHH
Confidence 5667788653221 101 00011 1122221 2 236888888899999999
Q ss_pred HHHcCCCccCHHHHHH
Q 003795 638 MMRDGRTEITTDDLLQ 653 (795)
Q Consensus 638 A~~~~~~~It~edl~~ 653 (795)
|...|+..|+.+|+.-
T Consensus 264 A~l~GR~~V~p~Dv~l 279 (498)
T PRK13531 264 AFFSGRDAIAPIDLIL 279 (498)
T ss_pred HHHCCCCCCCHHHHHH
Confidence 9999999999999993
No 172
>PRK04132 replication factor C small subunit; Provisional
Probab=98.83 E-value=2.6e-08 Score=120.49 Aligned_cols=178 Identities=21% Similarity=0.241 Sum_probs=127.8
Q ss_pred CcccCCc-eEEEC--CCCCchhHHHHHhhhhc-----cccEEEeeccceehhhhccchhhHHhHHHHHHhc------CCc
Q 003795 447 GVRIPGG-ILLCG--PPGVGKTLLAKAVAGEA-----GVNFFSISASQFVEIYVGVGASRVRSLYQEAKDN------APS 512 (795)
Q Consensus 447 gl~i~~g-iLL~G--PpGtGKTtLakaLA~el-----~~~~~~is~se~~~~~~g~~~~~l~~lf~~ar~~------~p~ 512 (795)
++.+|+- -+..| |++.||||+|++||+++ +.+++.+++++... ...++.+...+... .+.
T Consensus 559 ~~~~~~~~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rg------id~IR~iIk~~a~~~~~~~~~~K 632 (846)
T PRK04132 559 DLHVPGYHNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERG------INVIREKVKEFARTKPIGGASFK 632 (846)
T ss_pred EeccCchhhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCccc------HHHHHHHHHHHHhcCCcCCCCCE
Confidence 3445543 56678 99999999999999987 45789999887422 22455555443322 235
Q ss_pred eeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcccCCCcEEEEeccCCCCCCCccccCCCcccceecCCCCCHHH
Q 003795 513 VVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIG 592 (795)
Q Consensus 513 Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVIatTN~~d~LdpaLlrpgRFd~~I~~~~Pd~~e 592 (795)
|++|||+|.+... ..+.|+..|+ ....++.+|++||++..+.+++++ |+. .+.|++|+.++
T Consensus 633 VvIIDEaD~Lt~~--------------AQnALLk~lE--ep~~~~~FILi~N~~~kIi~tIrS--RC~-~i~F~~ls~~~ 693 (846)
T PRK04132 633 IIFLDEADALTQD--------------AQQALRRTME--MFSSNVRFILSCNYSSKIIEPIQS--RCA-IFRFRPLRDED 693 (846)
T ss_pred EEEEECcccCCHH--------------HHHHHHHHhh--CCCCCeEEEEEeCChhhCchHHhh--hce-EEeCCCCCHHH
Confidence 9999999998654 7888888888 445678999999999999999998 653 88999999999
Q ss_pred HHHHHHHHHccCCCC-ChhhHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHH
Q 003795 593 RMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAA 655 (795)
Q Consensus 593 R~~Il~~~l~~~~~~-~d~dl~~LA~~t~G~sgadL~~lv~~A~~~A~~~~~~~It~edl~~Al 655 (795)
....+...+....+. ++..+..++..+.|-.+.-| ++++.++. ....|+.+++..+.
T Consensus 694 i~~~L~~I~~~Egi~i~~e~L~~Ia~~s~GDlR~AI-n~Lq~~~~-----~~~~It~~~V~~~~ 751 (846)
T PRK04132 694 IAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAI-NILQAAAA-----LDDKITDENVFLVA 751 (846)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHH-HHHHHHHH-----hcCCCCHHHHHHHh
Confidence 888888776654332 45568888988887655555 44444331 12358888877654
No 173
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.83 E-value=1.3e-08 Score=111.01 Aligned_cols=129 Identities=33% Similarity=0.462 Sum_probs=92.1
Q ss_pred ccCCceEEECCCCCchhHHHHHhhhhcc------------------------ccEEEeeccceehhhhccchhhHHhHHH
Q 003795 449 RIPGGILLCGPPGVGKTLLAKAVAGEAG------------------------VNFFSISASQFVEIYVGVGASRVRSLYQ 504 (795)
Q Consensus 449 ~i~~giLL~GPpGtGKTtLakaLA~el~------------------------~~~~~is~se~~~~~~g~~~~~l~~lf~ 504 (795)
+.|..+||+||||+|||++|.++|+.+. +.+..++.++....- .....++.+-+
T Consensus 22 ~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~--i~~~~vr~~~~ 99 (325)
T COG0470 22 RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKID--IIVEQVRELAE 99 (325)
T ss_pred CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCCc--chHHHHHHHHH
Confidence 4455699999999999999999999876 566677766533221 11223344443
Q ss_pred HHHh----cCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcccCCCcEEEEeccCCCCCCCccccCCCccc
Q 003795 505 EAKD----NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFD 580 (795)
Q Consensus 505 ~ar~----~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVIatTN~~d~LdpaLlrpgRFd 580 (795)
.... ...-|++|||+|.+..+ ..+.++..++ ....+..+|.+||.+..+-|.+.+ |..
T Consensus 100 ~~~~~~~~~~~kviiidead~mt~~--------------A~nallk~lE--ep~~~~~~il~~n~~~~il~tI~S--Rc~ 161 (325)
T COG0470 100 FLSESPLEGGYKVVIIDEADKLTED--------------AANALLKTLE--EPPKNTRFILITNDPSKILPTIRS--RCQ 161 (325)
T ss_pred HhccCCCCCCceEEEeCcHHHHhHH--------------HHHHHHHHhc--cCCCCeEEEEEcCChhhccchhhh--cce
Confidence 3322 23569999999999765 7888888888 667788999999999999999998 543
Q ss_pred ceecCCCCCHHHHHHHHH
Q 003795 581 RKIFIPKPGLIGRMEILK 598 (795)
Q Consensus 581 ~~I~~~~Pd~~eR~~Il~ 598 (795)
.+.|++|+.........
T Consensus 162 -~i~f~~~~~~~~i~~~e 178 (325)
T COG0470 162 -RIRFKPPSRLEAIAWLE 178 (325)
T ss_pred -eeecCCchHHHHHHHhh
Confidence 77887765554444443
No 174
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.83 E-value=2.4e-08 Score=115.58 Aligned_cols=185 Identities=23% Similarity=0.257 Sum_probs=112.1
Q ss_pred ceEEECCCCCchhHHHHHhhhhccccEE--Eeeccc------------------eehh--------hhccchhhHHhHHH
Q 003795 453 GILLCGPPGVGKTLLAKAVAGEAGVNFF--SISASQ------------------FVEI--------YVGVGASRVRSLYQ 504 (795)
Q Consensus 453 giLL~GPpGtGKTtLakaLA~el~~~~~--~is~se------------------~~~~--------~~g~~~~~l~~lf~ 504 (795)
.++|+||||+|||+|++.+++.+.+..+ .+.... |... .+|.+...-...+.
T Consensus 213 ~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~g~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~ 292 (499)
T TIGR00368 213 NLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLVGKLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEIS 292 (499)
T ss_pred EEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccchhhhccccccccCCccccccccchhhhhCCccccchhhhh
Confidence 3899999999999999999985532111 011110 1100 11111000000111
Q ss_pred HHHhcCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhccc-----------CCCcEEEEeccCCC------C
Q 003795 505 EAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE-----------GRGNVITIASTNRP------D 567 (795)
Q Consensus 505 ~ar~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~-----------~~~~VlVIatTN~~------d 567 (795)
....+++||||++.+... ++..|++.|+... -..++.+|+++|.- +
T Consensus 293 ---lA~~GvLfLDEi~e~~~~--------------~~~~L~~~LE~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~ 355 (499)
T TIGR00368 293 ---LAHNGVLFLDELPEFKRS--------------VLDALREPIEDGSISISRASAKIFYPARFQLVAAMNPCPCGHYGG 355 (499)
T ss_pred ---ccCCCeEecCChhhCCHH--------------HHHHHHHHHHcCcEEEEecCcceeccCCeEEEEecCCcccCcCCC
Confidence 223469999999987544 6677777665321 12578999999862 1
Q ss_pred -----------------CCCccccCCCcccceecCCCCCHHH-------------HHHHHHH------HHccC---CCCC
Q 003795 568 -----------------ILDPALVRPGRFDRKIFIPKPGLIG-------------RMEILKV------HARKK---PMAD 608 (795)
Q Consensus 568 -----------------~LdpaLlrpgRFd~~I~~~~Pd~~e-------------R~~Il~~------~l~~~---~~~~ 608 (795)
.+...|++ |||.++.++.++..+ |..+.+. .+... ....
T Consensus 356 ~~~~c~c~~~~~~~y~~~is~pllD--R~dl~~~~~~~~~~~l~~~~~~e~s~~ir~rV~~Ar~~q~~R~~~~~~~~~N~ 433 (499)
T TIGR00368 356 KNTHCRCSPQQISRYWNKLSGPFLD--RIDLSVEVPLLPPEKLLSTGSGESSAEVKQRVIKAREIQNIRYEKFANINKNA 433 (499)
T ss_pred CcccccCCHHHHHHHhhhccHhHHh--hCCEEEEEcCCCHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccc
Confidence 47778888 999999998765432 2223221 11111 1111
Q ss_pred h----------------hhHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Q 003795 609 D----------------VDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQ 656 (795)
Q Consensus 609 d----------------~dl~~LA~~t~G~sgadL~~lv~~A~~~A~~~~~~~It~edl~~Al~ 656 (795)
. .++..-+....++|.+....+++-|...|-..+...|+.+|+.+|+.
T Consensus 434 ~l~~~~l~~~~~l~~~~~~~l~~a~~~~~lS~R~~~rilrvArTiAdL~g~~~i~~~hv~eA~~ 497 (499)
T TIGR00368 434 DLNSDEIEQFCKLSAIDANDLEGALNKLGLSSRATHRILKVARTIADLKEEKNISREHLAEAIE 497 (499)
T ss_pred cCCHHHHHhhcCCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHh
Confidence 1 11111122344689999999999999999999999999999999974
No 175
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=1.7e-08 Score=107.30 Aligned_cols=100 Identities=33% Similarity=0.537 Sum_probs=71.4
Q ss_pred cccCCc-eEEECCCCCchhHHHHHhhhhccccEEEeeccceehh-hhccchhhH-HhHHHHHH----hcCCceeEhHHHH
Q 003795 448 VRIPGG-ILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEI-YVGVGASRV-RSLYQEAK----DNAPSVVFIDELD 520 (795)
Q Consensus 448 l~i~~g-iLL~GPpGtGKTtLakaLA~el~~~~~~is~se~~~~-~~g~~~~~l-~~lf~~ar----~~~p~Il~IDEID 520 (795)
..+.++ |||+||+|+|||.||+.||..+++||.-.+...+.+. |+|....++ ..+.+.+. +..-+|++|||||
T Consensus 93 vEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVGEDVENillkLlqaadydV~rAerGIIyIDEID 172 (408)
T COG1219 93 VELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVERAERGIIYIDEID 172 (408)
T ss_pred eeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechh
Confidence 344444 9999999999999999999999999999998887765 899887765 34444431 2234599999999
Q ss_pred HHhhhccCC---CCCCcchHHHHHHHHHHhhhc
Q 003795 521 AVGRERGLI---KGSGGQERDATLNQLLVCLDG 550 (795)
Q Consensus 521 ~l~~~r~~~---~~Sgge~~r~~l~~LL~~ld~ 550 (795)
++....... .+-.|+. +...||..+++
T Consensus 173 KIarkSeN~SITRDVSGEG---VQQALLKiiEG 202 (408)
T COG1219 173 KIARKSENPSITRDVSGEG---VQQALLKIIEG 202 (408)
T ss_pred hhhccCCCCCcccccCchH---HHHHHHHHHcC
Confidence 997652211 1112332 56677777776
No 176
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.75 E-value=5.2e-08 Score=112.93 Aligned_cols=166 Identities=24% Similarity=0.318 Sum_probs=105.2
Q ss_pred eEEECCCCCchhHHHHHhhhhccccEEEeeccceehhhhccchhhHHhHHHHHH----hcCCceeEhHHHHHHhhhccCC
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAK----DNAPSVVFIDELDAVGRERGLI 529 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el~~~~~~is~se~~~~~~g~~~~~l~~lf~~ar----~~~p~Il~IDEID~l~~~r~~~ 529 (795)
+||+||||.||||||+.||+.+|..++.|+.++-..... -...+..+.+.-. ...|..++|||||.....
T Consensus 329 lLL~GppGlGKTTLAHViAkqaGYsVvEINASDeRt~~~--v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~~~---- 402 (877)
T KOG1969|consen 329 LLLCGPPGLGKTTLAHVIAKQAGYSVVEINASDERTAPM--VKEKIENAVQNHSVLDADSRPVCLVIDEIDGAPRA---- 402 (877)
T ss_pred EEeecCCCCChhHHHHHHHHhcCceEEEecccccccHHH--HHHHHHHHHhhccccccCCCcceEEEecccCCcHH----
Confidence 889999999999999999999999999999987433211 1111222222211 145767999999865322
Q ss_pred CCCCcchHHHHHHHHHHhhhcc------cCC-------------CcEEEEeccCCCCCCCccccCCCcccceecCCCCCH
Q 003795 530 KGSGGQERDATLNQLLVCLDGF------EGR-------------GNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGL 590 (795)
Q Consensus 530 ~~Sgge~~r~~l~~LL~~ld~~------~~~-------------~~VlVIatTN~~d~LdpaLlrpgRFd~~I~~~~Pd~ 590 (795)
.++.++..+..- ... -.--|||.+|... -|+|+.---|-.+|+|.+|..
T Consensus 403 ----------~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLY--aPaLR~Lr~~A~ii~f~~p~~ 470 (877)
T KOG1969|consen 403 ----------AVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLY--APALRPLRPFAEIIAFVPPSQ 470 (877)
T ss_pred ----------HHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCcc--chhhhhcccceEEEEecCCCh
Confidence 444444444310 000 0124677778643 466652224778999999988
Q ss_pred HHHHHHHHHHHccCCCCC-hhhHHHHHhhCCCCcHHHHHHHHHHHHHHHHHc
Q 003795 591 IGRMEILKVHARKKPMAD-DVDYLAVASMTDGMVGAELANIVEVAAINMMRD 641 (795)
Q Consensus 591 ~eR~~Il~~~l~~~~~~~-d~dl~~LA~~t~G~sgadL~~lv~~A~~~A~~~ 641 (795)
....+=|+..+....+.. ...+..|+..| -.||++.+|.-.+.+...
T Consensus 471 s~Lv~RL~~IC~rE~mr~d~~aL~~L~el~----~~DIRsCINtLQfLa~~~ 518 (877)
T KOG1969|consen 471 SRLVERLNEICHRENMRADSKALNALCELT----QNDIRSCINTLQFLASNV 518 (877)
T ss_pred hHHHHHHHHHHhhhcCCCCHHHHHHHHHHh----cchHHHHHHHHHHHHHhc
Confidence 877777776665554432 23355555555 469999999887776543
No 177
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=98.75 E-value=1.5e-08 Score=103.62 Aligned_cols=251 Identities=17% Similarity=0.206 Sum_probs=140.8
Q ss_pred ccccCccccccCccCchHHHHHHHHHHHhccccccccccCcccCCceEEECCCCCchhHHHHHhhhhc-cc----cEEEe
Q 003795 408 YLERGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEA-GV----NFFSI 482 (795)
Q Consensus 408 ~~~~~~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el-~~----~~~~i 482 (795)
+.++..+..+.++.|.++.+..+.-+...-.. .+++|.||||+||||-+.+||+++ |. .+.++
T Consensus 17 wVeKYrP~~l~dIVGNe~tv~rl~via~~gnm------------P~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLEL 84 (333)
T KOG0991|consen 17 WVEKYRPSVLQDIVGNEDTVERLSVIAKEGNM------------PNLIISGPPGTGKTTSILCLARELLGDSYKEAVLEL 84 (333)
T ss_pred HHHhhCchHHHHhhCCHHHHHHHHHHHHcCCC------------CceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhc
Confidence 45566788899999999998887765543211 238999999999999999999976 32 23445
Q ss_pred eccceehhhhccchhhHHhHHHHHHhcCC---ceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcccCCCcEEE
Q 003795 483 SASQFVEIYVGVGASRVRSLYQEAKDNAP---SVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVIT 559 (795)
Q Consensus 483 s~se~~~~~~g~~~~~l~~lf~~ar~~~p---~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlV 559 (795)
+.++-.. +..-...++.+-+.--..+| .|+++||.|++... ....|-..|+-.. ...-+
T Consensus 85 NASdeRG--IDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~g--------------AQQAlRRtMEiyS--~ttRF 146 (333)
T KOG0991|consen 85 NASDERG--IDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTAG--------------AQQALRRTMEIYS--NTTRF 146 (333)
T ss_pred cCccccc--cHHHHHHHHHHHHhhccCCCCceeEEEeeccchhhhH--------------HHHHHHHHHHHHc--ccchh
Confidence 5554211 11111222222222223333 48999999998543 3334444444222 23456
Q ss_pred EeccCCCCCCCccccCCCcccceecCCCCCHHHHH-HHHHHHHc-cCCCCChhhHHHHHhhCCCCcHHHHHHHHHHHHHH
Q 003795 560 IASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRM-EILKVHAR-KKPMADDVDYLAVASMTDGMVGAELANIVEVAAIN 637 (795)
Q Consensus 560 IatTN~~d~LdpaLlrpgRFd~~I~~~~Pd~~eR~-~Il~~~l~-~~~~~~d~dl~~LA~~t~G~sgadL~~lv~~A~~~ 637 (795)
..++|..+.|-+.+.+ |.. .+.+...+..+.. .++...-. +.+. .+.-+..+.--..|-....|.+| +
T Consensus 147 alaCN~s~KIiEPIQS--RCA-iLRysklsd~qiL~Rl~~v~k~Ekv~y-t~dgLeaiifta~GDMRQalNnL------Q 216 (333)
T KOG0991|consen 147 ALACNQSEKIIEPIQS--RCA-ILRYSKLSDQQILKRLLEVAKAEKVNY-TDDGLEAIIFTAQGDMRQALNNL------Q 216 (333)
T ss_pred hhhhcchhhhhhhHHh--hhH-hhhhcccCHHHHHHHHHHHHHHhCCCC-CcchHHHhhhhccchHHHHHHHH------H
Confidence 6677877777777766 443 4445455554433 33333222 2232 23335666655665444444333 4
Q ss_pred HHHcCCCccCHHHHHHHHHHHHhcccccccccchhhh---HHHHHHHHHHHHHHhcCCCCccceEEEecC
Q 003795 638 MMRDGRTEITTDDLLQAAQIEERGMLDRKERSSETWR---QVAINEAAMAVVAVNFPDLKNIEFVTIAPR 704 (795)
Q Consensus 638 A~~~~~~~It~edl~~Al~~~~~~~~~~~~~~~~~~~---~va~hEaGhalva~~l~~~~~i~~vtI~pr 704 (795)
+...+-..|+.+.+....+.-....+ ..... .--++||-..+...+-.+..|.+.|+-..|
T Consensus 217 st~~g~g~Vn~enVfKv~d~PhP~~v------~~ml~~~~~~~~~~A~~il~~lw~lgysp~Dii~~~FR 280 (333)
T KOG0991|consen 217 STVNGFGLVNQENVFKVCDEPHPLLV------KKMLQACLKRNIDEALKILAELWKLGYSPEDIITTLFR 280 (333)
T ss_pred HHhccccccchhhhhhccCCCChHHH------HHHHHHHHhccHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 55667778888888776541100000 00000 013677777777766566777777766655
No 178
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.74 E-value=7.1e-08 Score=111.33 Aligned_cols=184 Identities=24% Similarity=0.264 Sum_probs=112.8
Q ss_pred eEEECCCCCchhHHHHHhhhhccccEEE--eeccc------------------eehh--------hhccchhhHHhHHHH
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEAGVNFFS--ISASQ------------------FVEI--------YVGVGASRVRSLYQE 505 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el~~~~~~--is~se------------------~~~~--------~~g~~~~~l~~lf~~ 505 (795)
++|+||||+|||+|++.|++.+.+..+. +..+. |... .+|.+...-...+.
T Consensus 213 llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l~- 291 (506)
T PRK09862 213 LLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEIS- 291 (506)
T ss_pred EEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhccccccCCcCCCCccCCCccchHHHHhCCCceehhhHhh-
Confidence 9999999999999999999876433211 11111 1111 11211100011222
Q ss_pred HHhcCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhccc-----------CCCcEEEEeccCCCC-------
Q 003795 506 AKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE-----------GRGNVITIASTNRPD------- 567 (795)
Q Consensus 506 ar~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~-----------~~~~VlVIatTN~~d------- 567 (795)
....+++|+||++.+... ++..|++.|+.-. -..++.+|+|+|...
T Consensus 292 --~A~gGvLfLDEi~e~~~~--------------~~~~L~~~LE~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~ 355 (506)
T PRK09862 292 --LAHNGVLFLDELPEFERR--------------TLDALREPIESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGN 355 (506)
T ss_pred --hccCCEEecCCchhCCHH--------------HHHHHHHHHHcCcEEEecCCcceeccCCEEEEEeecCccceecCCC
Confidence 223459999999876543 6777777664311 135689999999752
Q ss_pred --------------CCCccccCCCcccceecCCCCCHHH----------HHHHH----H---HH-Hc----cCCCCC---
Q 003795 568 --------------ILDPALVRPGRFDRKIFIPKPGLIG----------RMEIL----K---VH-AR----KKPMAD--- 608 (795)
Q Consensus 568 --------------~LdpaLlrpgRFd~~I~~~~Pd~~e----------R~~Il----~---~~-l~----~~~~~~--- 608 (795)
.++.++++ |||.++.++.|+.++ ...|- . .. .+ +..+..
T Consensus 356 ~c~c~~~~~~~Y~~~ls~plLD--RfdL~v~v~~~~~~~l~~~~~~~ess~~i~~rV~~ar~~q~~r~~~~n~~l~~~~l 433 (506)
T PRK09862 356 HNRCTPEQTLRYLNRLSGPFLD--RFDLSLEIPLPPPGILSKTVVPGESSATVKQRVMAARERQFKRQNKLNAWLDSPEI 433 (506)
T ss_pred CCCcCHHHHHHHHhhCCHhHHh--hccEEEEeCCCCHHHHhcccCCCCChHHHHHHHhhHHHHHHHHHHHHhcccCHHHH
Confidence 36678888 999999999874321 11121 1 00 00 000000
Q ss_pred -------h--hhHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Q 003795 609 -------D--VDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQ 656 (795)
Q Consensus 609 -------d--~dl~~LA~~t~G~sgadL~~lv~~A~~~A~~~~~~~It~edl~~Al~ 656 (795)
. ..+..-+....|.|.+....+++-|...|...++..|+.+|+.+|+.
T Consensus 434 ~~~~~l~~~~~~~l~~~~~~~~lS~Ra~~rlLrvARTiADL~g~~~V~~~hv~eAl~ 490 (506)
T PRK09862 434 RQFCKLESEDARWLEETLIHLGLSIRAWQRLLKVARTIADIDQSDIITRQHLQEAVS 490 (506)
T ss_pred HHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 0 00111123455789999999999999999999999999999999986
No 179
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.74 E-value=2.5e-08 Score=112.59 Aligned_cols=121 Identities=31% Similarity=0.439 Sum_probs=74.7
Q ss_pred CCceEEECCCCCchhHHHHHhhhhccc--cEEEeecc---------ceehhh----hccc--hhhHHhHHHHHHhc--CC
Q 003795 451 PGGILLCGPPGVGKTLLAKAVAGEAGV--NFFSISAS---------QFVEIY----VGVG--ASRVRSLYQEAKDN--AP 511 (795)
Q Consensus 451 ~~giLL~GPpGtGKTtLakaLA~el~~--~~~~is~s---------e~~~~~----~g~~--~~~l~~lf~~ar~~--~p 511 (795)
.++++|+||||||||++|+.+|..+.. .+..+.+- +++..+ +|.. .+.+..+...|... .|
T Consensus 194 ~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~ 273 (459)
T PRK11331 194 KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKK 273 (459)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCCCCCeEecCchHHHHHHHHHhcccCC
Confidence 345899999999999999999987632 11122211 122111 1111 11223344555543 47
Q ss_pred ceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhh--------------------cccCCCcEEEEeccCCCC----
Q 003795 512 SVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLD--------------------GFEGRGNVITIASTNRPD---- 567 (795)
Q Consensus 512 ~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld--------------------~~~~~~~VlVIatTN~~d---- 567 (795)
++++||||+.....+ ++..++..|+ .+.-..|+.||+|+|..|
T Consensus 274 ~vliIDEINRani~k-------------iFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~ 340 (459)
T PRK11331 274 YVFIIDEINRANLSK-------------VFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVPENVYIIGLMNTADRSLA 340 (459)
T ss_pred cEEEEehhhccCHHH-------------hhhhhhhhccccccccccceeeeccccccccccCCCCeEEEEecCccccchh
Confidence 899999998765442 2222222222 244567899999999988
Q ss_pred CCCccccCCCcccceecCCC
Q 003795 568 ILDPALVRPGRFDRKIFIPK 587 (795)
Q Consensus 568 ~LdpaLlrpgRFd~~I~~~~ 587 (795)
.+|.||+| ||. .|.+.+
T Consensus 341 ~lD~AlrR--RF~-fi~i~p 357 (459)
T PRK11331 341 VVDYALRR--RFS-FIDIEP 357 (459)
T ss_pred hccHHHHh--hhh-eEEecC
Confidence 79999999 986 566654
No 180
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=1.3e-07 Score=112.56 Aligned_cols=176 Identities=24% Similarity=0.406 Sum_probs=122.8
Q ss_pred ceEEECCCCCchhHHHHHhhhhc----------cccEEEeeccceeh--hhhccchhhHHhHHHHHHhcCCceeEhHHHH
Q 003795 453 GILLCGPPGVGKTLLAKAVAGEA----------GVNFFSISASQFVE--IYVGVGASRVRSLYQEAKDNAPSVVFIDELD 520 (795)
Q Consensus 453 giLL~GPpGtGKTtLakaLA~el----------~~~~~~is~se~~~--~~~g~~~~~l~~lf~~ar~~~p~Il~IDEID 520 (795)
+-+|+|+||+|||.++.-||... +..++.++++.++. .|-|+-+.+++.+.+.+....+.|+|||||+
T Consensus 193 NPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiH 272 (786)
T COG0542 193 NPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIH 272 (786)
T ss_pred CCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechh
Confidence 35899999999999999988754 45678888888764 4899999999999999998888899999999
Q ss_pred HHhhhccCCCCCCcchHHHHHHHHHHhhhcccCCCcEEEEeccCCCC-----CCCccccCCCcccceecCCCCCHHHHHH
Q 003795 521 AVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPD-----ILDPALVRPGRFDRKIFIPKPGLIGRME 595 (795)
Q Consensus 521 ~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVIatTN~~d-----~LdpaLlrpgRFd~~I~~~~Pd~~eR~~ 595 (795)
.+.+... .+|+ .-..-|.|--.+ .++.+-+|++|+.-+ .-|+||-| ||. .|.+..|+.++-..
T Consensus 273 tiVGAG~---~~G~--a~DAaNiLKPaL----ARGeL~~IGATT~~EYRk~iEKD~AL~R--RFQ-~V~V~EPs~e~ti~ 340 (786)
T COG0542 273 TIVGAGA---TEGG--AMDAANLLKPAL----ARGELRCIGATTLDEYRKYIEKDAALER--RFQ-KVLVDEPSVEDTIA 340 (786)
T ss_pred hhcCCCc---cccc--ccchhhhhHHHH----hcCCeEEEEeccHHHHHHHhhhchHHHh--cCc-eeeCCCCCHHHHHH
Confidence 9966421 1121 112333333223 356788898875433 35899999 998 89999999999999
Q ss_pred HHHHHHccCCCC-----ChhhHHHHHhh-----CCCCcHHHHHHHHHHHHHHHHH
Q 003795 596 ILKVHARKKPMA-----DDVDYLAVASM-----TDGMVGAELANIVEVAAINMMR 640 (795)
Q Consensus 596 Il~~~l~~~~~~-----~d~dl~~LA~~-----t~G~sgadL~~lv~~A~~~A~~ 640 (795)
|++..-.....+ .|.-+...+.. +..+-+.--..++++|+.....
T Consensus 341 ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~RYI~dR~LPDKAIDLiDeA~a~~~l 395 (786)
T COG0542 341 ILRGLKERYEAHHGVRITDEALVAAVTLSDRYIPDRFLPDKAIDLLDEAGARVRL 395 (786)
T ss_pred HHHHHHHHHHHccCceecHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHh
Confidence 998554333211 22223333322 3345555566888888765544
No 181
>PLN03073 ABC transporter F family; Provisional
Probab=98.71 E-value=6e-08 Score=117.16 Aligned_cols=232 Identities=15% Similarity=0.165 Sum_probs=121.8
Q ss_pred hhhhhccccceeeeechhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchhhhhhhhhcCchHHHhhc
Q 003795 310 STVATGLGIVFFVIFYRTVVLNYRRQKKDYEDRLKIEKAEREERKKLRQLERELEGLEGADDEIEQGEAEQNPHLKMAMQ 389 (795)
Q Consensus 310 ~~~i~~l~~~~~l~~Ykgny~~y~~~~e~~e~~~~~ek~~e~~~~ei~~Lekele~~~~~~~~~~~~~~~~~~~~k~~v~ 389 (795)
++++..+ ..|++..|.|+|+.|....+ ++....++.++.++++++.+++.+.+.+...... . ....
T Consensus 408 ~d~i~~l-~~g~i~~~~g~~~~~~~~~~--~~~~~~~~~~e~~~k~~~~l~~~i~~~~~~a~~~--~---------~~~s 473 (718)
T PLN03073 408 VTDILHL-HGQKLVTYKGDYDTFERTRE--EQLKNQQKAFESNERSRSHMQAFIDKFRYNAKRA--S---------LVQS 473 (718)
T ss_pred CCEEEEE-ECCEEEEeCCCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh--H---------HHhh
Confidence 5667777 67889999999999987766 4444555566666677777777665433111000 0 0000
Q ss_pred hhhhHHHHHHHhcCCCCcccccCccccccCcc-CchHHHHHHHHHHHhcc-ccccccccCcccCCc--eEEECCCCCchh
Q 003795 390 FMKSGARVRRAYGKGLPQYLERGVDVKFSDVA-GLGKIRLELEEIVKFFT-HGEMYRRRGVRIPGG--ILLCGPPGVGKT 465 (795)
Q Consensus 390 ~~~~~~~vsr~tgipv~~~~~~~~~~~f~~~~-gl~~~~~~l~~lv~~~~-~~~~~~~~gl~i~~g--iLL~GPpGtGKT 465 (795)
..+..+.+.... +.. ......+.|.... ..+...+.++++...|. ...++.++++.+..| ++|+||||+|||
T Consensus 474 ~~k~l~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~L~~~~ls~~y~~~~~il~~vsl~i~~Ge~i~LvG~NGsGKS 549 (718)
T PLN03073 474 RIKALDRLGHVD--AVV--NDPDYKFEFPTPDDRPGPPIISFSDASFGYPGGPLLFKNLNFGIDLDSRIAMVGPNGIGKS 549 (718)
T ss_pred cchHHHHHhhhh--ccc--cCCCceeecCCCccCCCCceEEEEeeEEEeCCCCeeEeccEEEEcCCCEEEEECCCCCcHH
Confidence 000001110000 000 0001111222110 11223445556665664 334788899999888 899999999999
Q ss_pred HHHHHhhhhccccEEEeeccceeh-hhhccch-hh--H--HhHHHHHHhcCCceeEhHHHHHHhhhccC---------CC
Q 003795 466 LLAKAVAGEAGVNFFSISASQFVE-IYVGVGA-SR--V--RSLYQEAKDNAPSVVFIDELDAVGRERGL---------IK 530 (795)
Q Consensus 466 tLakaLA~el~~~~~~is~se~~~-~~~g~~~-~~--l--~~lf~~ar~~~p~Il~IDEID~l~~~r~~---------~~ 530 (795)
||+++|+|.+.+..+.+....... .|+.+.. .. + ..++..... .+. .--.++..++...+. ..
T Consensus 550 TLLk~L~Gll~p~~G~I~~~~~~~igyv~Q~~~~~l~~~~~~~~~~~~~-~~~-~~~~~i~~~L~~~gl~~~~~~~~~~~ 627 (718)
T PLN03073 550 TILKLISGELQPSSGTVFRSAKVRMAVFSQHHVDGLDLSSNPLLYMMRC-FPG-VPEQKLRAHLGSFGVTGNLALQPMYT 627 (718)
T ss_pred HHHHHHhCCCCCCCceEEECCceeEEEEeccccccCCcchhHHHHHHHh-cCC-CCHHHHHHHHHHCCCChHHhcCCccc
Confidence 999999998876666654332111 1222111 00 0 001111111 111 111233333322221 12
Q ss_pred CCCcchHHHHHHHHHHhhhcccCCCcEEEE-eccCCCC
Q 003795 531 GSGGQERDATLNQLLVCLDGFEGRGNVITI-ASTNRPD 567 (795)
Q Consensus 531 ~Sgge~~r~~l~~LL~~ld~~~~~~~VlVI-atTN~~d 567 (795)
-|||++.+..+...+ ....+++++ .+||+.|
T Consensus 628 LSgGqkqRvaLAraL------~~~p~lLLLDEPT~~LD 659 (718)
T PLN03073 628 LSGGQKSRVAFAKIT------FKKPHILLLDEPSNHLD 659 (718)
T ss_pred cCHHHHHHHHHHHHH------hcCCCEEEEcCCCCCCC
Confidence 289999999988877 456778888 8888765
No 182
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.71 E-value=9.7e-08 Score=104.81 Aligned_cols=149 Identities=19% Similarity=0.267 Sum_probs=101.7
Q ss_pred ccCCceEEECCCCCchhHHHHHhhhhccc------------------------cEEEeeccceehhhhccchhhHHhHHH
Q 003795 449 RIPGGILLCGPPGVGKTLLAKAVAGEAGV------------------------NFFSISASQFVEIYVGVGASRVRSLYQ 504 (795)
Q Consensus 449 ~i~~giLL~GPpGtGKTtLakaLA~el~~------------------------~~~~is~se~~~~~~g~~~~~l~~lf~ 504 (795)
+++.+++|+||.|+||+++|+.+|..+-+ ++..+...+-. .-+...++.+.+
T Consensus 22 rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~----~I~id~iR~l~~ 97 (325)
T PRK06871 22 LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNK----DIGVDQVREINE 97 (325)
T ss_pred CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCC----CCCHHHHHHHHH
Confidence 46677999999999999999999986522 12222111000 012234555555
Q ss_pred HHHh----cCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcccCCCcEEEEeccCCCCCCCccccCCCccc
Q 003795 505 EAKD----NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFD 580 (795)
Q Consensus 505 ~ar~----~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVIatTN~~d~LdpaLlrpgRFd 580 (795)
.+.. ....|++||++|.+... ..|.||..++ .+..++++|.+|+.++.+.|.+++ |..
T Consensus 98 ~~~~~~~~g~~KV~iI~~a~~m~~~--------------AaNaLLKtLE--EPp~~~~fiL~t~~~~~llpTI~S--RC~ 159 (325)
T PRK06871 98 KVSQHAQQGGNKVVYIQGAERLTEA--------------AANALLKTLE--EPRPNTYFLLQADLSAALLPTIYS--RCQ 159 (325)
T ss_pred HHhhccccCCceEEEEechhhhCHH--------------HHHHHHHHhc--CCCCCeEEEEEECChHhCchHHHh--hce
Confidence 4432 33468999999998654 7899999999 677889999999999999999998 554
Q ss_pred ceecCCCCCHHHHHHHHHHHHccCCCCChhhHHHHHhhCCCCcH
Q 003795 581 RKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVG 624 (795)
Q Consensus 581 ~~I~~~~Pd~~eR~~Il~~~l~~~~~~~d~dl~~LA~~t~G~sg 624 (795)
.+.|++|+.++..+.+..... .+......++..+.|..+
T Consensus 160 -~~~~~~~~~~~~~~~L~~~~~----~~~~~~~~~~~l~~g~p~ 198 (325)
T PRK06871 160 -TWLIHPPEEQQALDWLQAQSS----AEISEILTALRINYGRPL 198 (325)
T ss_pred -EEeCCCCCHHHHHHHHHHHhc----cChHHHHHHHHHcCCCHH
Confidence 789999999888777765432 122233444555555443
No 183
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=98.70 E-value=5.4e-08 Score=109.28 Aligned_cols=231 Identities=15% Similarity=0.102 Sum_probs=141.0
Q ss_pred hhhhccccceeeeechhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchhhhhhhhhcCchHHHhhch
Q 003795 311 TVATGLGIVFFVIFYRTVVLNYRRQKKDYEDRLKIEKAEREERKKLRQLERELEGLEGADDEIEQGEAEQNPHLKMAMQF 390 (795)
Q Consensus 311 ~~i~~l~~~~~l~~Ykgny~~y~~~~e~~e~~~~~ek~~e~~~~ei~~Lekele~~~~~~~~~~~~~~~~~~~~k~~v~~ 390 (795)
+.|..+ ...++..|+|||+.|.+.+. ++..+++++++.+......++..+.+++-.+++. + ...+.
T Consensus 263 tdIIH~-~~~kL~~YkGN~~~Fvk~k~--E~~~n~qrefe~q~~~R~h~q~fid~FrYna~ra--------~---svqSR 328 (582)
T KOG0062|consen 263 TDIIHL-ENLKLDYYKGNYSQFVKTKP--EAKKNQQREFEVQMKYRAHLQVFIDKFRYNAARA--------S---SVQSR 328 (582)
T ss_pred HHHHHH-hhhhhhhhcCcHHHHHHhhH--HhhhhhhhhcchHHHHHHHHHHHHHHhccCcccc--------h---hHHHH
Confidence 344444 55678899999999999999 5557778888888888888888888776432210 0 11110
Q ss_pred hhhHHHHHHHhcCCCC--cccccCccccccC-ccCchHHHHHHHHHHHhcccc--ccccccCcccCC--ceEEECCCCCc
Q 003795 391 MKSGARVRRAYGKGLP--QYLERGVDVKFSD-VAGLGKIRLELEEIVKFFTHG--EMYRRRGVRIPG--GILLCGPPGVG 463 (795)
Q Consensus 391 ~~~~~~vsr~tgipv~--~~~~~~~~~~f~~-~~gl~~~~~~l~~lv~~~~~~--~~~~~~gl~i~~--giLL~GPpGtG 463 (795)
.+.+ ...|.. ...+......|+. ..-+.....++.++...+... ..+..+|..... -+..+|++|.|
T Consensus 329 ---Ik~L---~kl~~lk~~~~~~~~~~~fP~~~e~~~~p~l~i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~g 402 (582)
T KOG0062|consen 329 ---IKML---GKLPALKSTLIEVLIGFLFPTEGEVLSPPNLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDG 402 (582)
T ss_pred ---HHHh---ccCCCCCccceecccceecCCCCCcCCCCeeEEEeeeccCCCcchhhhhccCCccchhhhhheeccCchh
Confidence 1111 111111 1222233444544 223344445555555544322 355556665543 39999999999
Q ss_pred hhHHHHHhhhhccccEEEeeccceehh-hhcc-ch---hhHHhHHHHHHhcCCceeEhHHHHHHhhhccCCCC-------
Q 003795 464 KTLLAKAVAGEAGVNFFSISASQFVEI-YVGV-GA---SRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKG------- 531 (795)
Q Consensus 464 KTtLakaLA~el~~~~~~is~se~~~~-~~g~-~~---~~l~~lf~~ar~~~p~Il~IDEID~l~~~r~~~~~------- 531 (795)
|||+.+.+.+++.+.-+.+....-... |..+ .. ......++......|+. .=.|++.-++..+..+.
T Consensus 403 kst~lKi~~~~l~~~rgi~~~~~r~ri~~f~Qhhvd~l~~~v~~vd~~~~~~pG~-~~ee~r~hl~~~Gl~g~la~~si~ 481 (582)
T KOG0062|consen 403 KSTLLKILKGDLTPTRGIVGRHPRLRIKYFAQHHVDFLDKNVNAVDFMEKSFPGK-TEEEIRRHLGSFGLSGELALQSIA 481 (582)
T ss_pred HHHHHHHHhccCCcccceeeecccceecchhHhhhhHHHHHhHHHHHHHHhCCCC-CHHHHHHHHHhcCCCchhhhcccc
Confidence 999999999988765544433322211 1111 11 11233455555666664 55677776666554433
Q ss_pred --CCcchHHHHHHHHHHhhhcccCCCcEEEE-eccCCCCC
Q 003795 532 --SGGQERDATLNQLLVCLDGFEGRGNVITI-ASTNRPDI 568 (795)
Q Consensus 532 --Sgge~~r~~l~~LL~~ld~~~~~~~VlVI-atTN~~d~ 568 (795)
|||++.+.+++.+. ..+++++|+ .+||++|.
T Consensus 482 ~LSGGQKsrvafA~~~------~~~PhlLVLDEPTNhLD~ 515 (582)
T KOG0062|consen 482 SLSGGQKSRVAFAACT------WNNPHLLVLDEPTNHLDR 515 (582)
T ss_pred ccCCcchhHHHHHHHh------cCCCcEEEecCCCccccH
Confidence 99999999999988 788999999 99999873
No 184
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.69 E-value=9.7e-08 Score=105.51 Aligned_cols=154 Identities=20% Similarity=0.251 Sum_probs=104.6
Q ss_pred cccCCceEEECCCCCchhHHHHHhhhhcc------------------------ccEEEeeccceehhhhccchhhHHhHH
Q 003795 448 VRIPGGILLCGPPGVGKTLLAKAVAGEAG------------------------VNFFSISASQFVEIYVGVGASRVRSLY 503 (795)
Q Consensus 448 l~i~~giLL~GPpGtGKTtLakaLA~el~------------------------~~~~~is~se~~~~~~g~~~~~l~~lf 503 (795)
-+++.++||+||.|+||+++|.++|..+- +++..+....-. . .-....++.+.
T Consensus 21 ~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~-~--~I~idqiR~l~ 97 (334)
T PRK07993 21 GRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGK-S--SLGVDAVREVT 97 (334)
T ss_pred CCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEeccccc-c--cCCHHHHHHHH
Confidence 35677799999999999999999988652 122222221100 0 01123345555
Q ss_pred HHHH----hcCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcccCCCcEEEEeccCCCCCCCccccCCCcc
Q 003795 504 QEAK----DNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRF 579 (795)
Q Consensus 504 ~~ar----~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVIatTN~~d~LdpaLlrpgRF 579 (795)
+.+. .....|++||++|.+... ..|.||..++ .+..++++|..|+.++.|.|.+++ |.
T Consensus 98 ~~~~~~~~~g~~kV~iI~~ae~m~~~--------------AaNaLLKtLE--EPp~~t~fiL~t~~~~~lLpTIrS--RC 159 (334)
T PRK07993 98 EKLYEHARLGGAKVVWLPDAALLTDA--------------AANALLKTLE--EPPENTWFFLACREPARLLATLRS--RC 159 (334)
T ss_pred HHHhhccccCCceEEEEcchHhhCHH--------------HHHHHHHHhc--CCCCCeEEEEEECChhhChHHHHh--cc
Confidence 4443 334569999999998655 7899999999 677889999999999999999999 66
Q ss_pred cceecCCCCCHHHHHHHHHHHHccCCCCChhhHHHHHhhCCCCcHHHH
Q 003795 580 DRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAEL 627 (795)
Q Consensus 580 d~~I~~~~Pd~~eR~~Il~~~l~~~~~~~d~dl~~LA~~t~G~sgadL 627 (795)
. .+.|++|+.++....+.... .. +..+...+++.+.|-.+..+
T Consensus 160 q-~~~~~~~~~~~~~~~L~~~~---~~-~~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 160 R-LHYLAPPPEQYALTWLSREV---TM-SQDALLAALRLSAGAPGAAL 202 (334)
T ss_pred c-cccCCCCCHHHHHHHHHHcc---CC-CHHHHHHHHHHcCCCHHHHH
Confidence 5 68999999888777665321 22 22234456666666544433
No 185
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.69 E-value=8.9e-08 Score=104.95 Aligned_cols=179 Identities=20% Similarity=0.253 Sum_probs=116.4
Q ss_pred cccCccCchHHHHHHHHHHHhccccccccccCcccCCceEEECCCCCchhHHHHHhhhhccc------------------
Q 003795 416 KFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGV------------------ 477 (795)
Q Consensus 416 ~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el~~------------------ 477 (795)
.|+++.|.+.++..+...+.. -+++.++||+||.|+||+++|.++|..+-.
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~-----------~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hP 70 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQ-----------NRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHP 70 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHh-----------CCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCC
Confidence 467788888888777766642 245667999999999999999999886522
Q ss_pred cEEEeeccceehh------h---hc--------cchhhHHhHHHHHHh----cCCceeEhHHHHHHhhhccCCCCCCcch
Q 003795 478 NFFSISASQFVEI------Y---VG--------VGASRVRSLYQEAKD----NAPSVVFIDELDAVGRERGLIKGSGGQE 536 (795)
Q Consensus 478 ~~~~is~se~~~~------~---~g--------~~~~~l~~lf~~ar~----~~p~Il~IDEID~l~~~r~~~~~Sgge~ 536 (795)
++..+.+...... + .| -....++.+.+.+.. ....|++||++|.+...
T Consensus 71 Dl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~----------- 139 (314)
T PRK07399 71 DLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEA----------- 139 (314)
T ss_pred CEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHH-----------
Confidence 1222222100000 0 00 001134455444432 33568999999888554
Q ss_pred HHHHHHHHHHhhhcccCCCcEEEEeccCCCCCCCccccCCCcccceecCCCCCHHHHHHHHHHHHccCCCCChhhHHHHH
Q 003795 537 RDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVA 616 (795)
Q Consensus 537 ~r~~l~~LL~~ld~~~~~~~VlVIatTN~~d~LdpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~~~~~d~dl~~LA 616 (795)
..|.||..|+.. . +.++|..|+.++.|.|++++ |.. .+.|++|+.++..+++........ .+.+...++
T Consensus 140 ---aaNaLLK~LEEP--p-~~~fILi~~~~~~Ll~TI~S--Rcq-~i~f~~l~~~~~~~~L~~~~~~~~--~~~~~~~l~ 208 (314)
T PRK07399 140 ---AANALLKTLEEP--G-NGTLILIAPSPESLLPTIVS--RCQ-IIPFYRLSDEQLEQVLKRLGDEEI--LNINFPELL 208 (314)
T ss_pred ---HHHHHHHHHhCC--C-CCeEEEEECChHhCcHHHHh--hce-EEecCCCCHHHHHHHHHHhhcccc--chhHHHHHH
Confidence 788999999843 3 45677777788999999999 653 899999999999998886643211 122345677
Q ss_pred hhCCCCcHHHH
Q 003795 617 SMTDGMVGAEL 627 (795)
Q Consensus 617 ~~t~G~sgadL 627 (795)
....|-.+.-+
T Consensus 209 ~~a~Gs~~~al 219 (314)
T PRK07399 209 ALAQGSPGAAI 219 (314)
T ss_pred HHcCCCHHHHH
Confidence 77766555444
No 186
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=8.6e-08 Score=102.70 Aligned_cols=84 Identities=29% Similarity=0.437 Sum_probs=62.3
Q ss_pred CceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcc--------cCCCcEEEEecc----CCCCCCCccccCCCc
Q 003795 511 PSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGF--------EGRGNVITIAST----NRPDILDPALVRPGR 578 (795)
Q Consensus 511 p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~--------~~~~~VlVIatT----N~~d~LdpaLlrpgR 578 (795)
.+|+||||||+++...+ .++++-.+.-+...||-.++|. ....++++|++. ..|+.|-|.|. ||
T Consensus 251 ~GIvFIDEIDKIa~~~~--~g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQ--GR 326 (444)
T COG1220 251 NGIVFIDEIDKIAKRGG--SGGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQ--GR 326 (444)
T ss_pred cCeEEEehhhHHHhcCC--CCCCCcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhc--CC
Confidence 35999999999986533 1222444455777888777763 245679999877 44677778884 69
Q ss_pred ccceecCCCCCHHHHHHHHH
Q 003795 579 FDRKIFIPKPGLIGRMEILK 598 (795)
Q Consensus 579 Fd~~I~~~~Pd~~eR~~Il~ 598 (795)
|+..+++...+.++...||.
T Consensus 327 fPIRVEL~~Lt~~Df~rILt 346 (444)
T COG1220 327 FPIRVELDALTKEDFERILT 346 (444)
T ss_pred CceEEEcccCCHHHHHHHHc
Confidence 99999999999999888875
No 187
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.66 E-value=4.6e-08 Score=108.04 Aligned_cols=133 Identities=23% Similarity=0.310 Sum_probs=91.8
Q ss_pred ccCCceEEECCCCCchhHHHHHhhhhcccc-------------------------EEEeeccceeh--------hh----
Q 003795 449 RIPGGILLCGPPGVGKTLLAKAVAGEAGVN-------------------------FFSISASQFVE--------IY---- 491 (795)
Q Consensus 449 ~i~~giLL~GPpGtGKTtLakaLA~el~~~-------------------------~~~is~se~~~--------~~---- 491 (795)
++|.++||+||+|+||+++|+.+|..+.+. +..+....... .+
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~ 98 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADA 98 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchh
Confidence 778889999999999999999999866332 11111110000 00
Q ss_pred --hc---------cchhhHHhHHHHHHh----cCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcccCCCc
Q 003795 492 --VG---------VGASRVRSLYQEAKD----NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGN 556 (795)
Q Consensus 492 --~g---------~~~~~l~~lf~~ar~----~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~ 556 (795)
-| -....++.+.+.+.. ....|++||++|.+... ..|.||..++ ....+
T Consensus 99 ~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~--------------AaNaLLKtLE--EPp~~ 162 (342)
T PRK06964 99 DEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALNVA--------------AANALLKTLE--EPPPG 162 (342)
T ss_pred hcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcCHH--------------HHHHHHHHhc--CCCcC
Confidence 00 011233444443322 22347778888777554 7899999999 67788
Q ss_pred EEEEeccCCCCCCCccccCCCcccceecCCCCCHHHHHHHHHHH
Q 003795 557 VITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVH 600 (795)
Q Consensus 557 VlVIatTN~~d~LdpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~ 600 (795)
+++|.+|+.++.|.|.+++ |. ..+.|++|+.++..+.+...
T Consensus 163 t~fiL~t~~~~~LLpTI~S--Rc-q~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 163 TVFLLVSARIDRLLPTILS--RC-RQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred cEEEEEECChhhCcHHHHh--cC-EEEEecCCCHHHHHHHHHHc
Confidence 9999999999999999999 66 48999999999888888654
No 188
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=1.1e-07 Score=106.69 Aligned_cols=140 Identities=23% Similarity=0.427 Sum_probs=100.4
Q ss_pred ceEEECCCCCchhHHHHHhhhhccccEEEee-ccceehhhhccchhhHHhHHHHHHhcCCceeEhHHHHHHhhhccCCCC
Q 003795 453 GILLCGPPGVGKTLLAKAVAGEAGVNFFSIS-ASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKG 531 (795)
Q Consensus 453 giLL~GPpGtGKTtLakaLA~el~~~~~~is-~se~~~~~~g~~~~~l~~lf~~ar~~~p~Il~IDEID~l~~~r~~~~~ 531 (795)
++||.||||+|||+||-.+|...+.||+.+- +.+.+...-......+..+|+.|.+.+-+++++|+|+.+..- ..
T Consensus 540 SvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErLiD~----vp 615 (744)
T KOG0741|consen 540 SVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIERLLDY----VP 615 (744)
T ss_pred EEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCcceEEEEcchhhhhcc----cc
Confidence 4899999999999999999999999999764 333333222223345788999999999899999999998532 22
Q ss_pred CCcchHHHHHHHHHHhhhcccCCCc-EEEEeccCCCCCCC-ccccCCCcccceecCCCCCH-HHHHHHHH
Q 003795 532 SGGQERDATLNQLLVCLDGFEGRGN-VITIASTNRPDILD-PALVRPGRFDRKIFIPKPGL-IGRMEILK 598 (795)
Q Consensus 532 Sgge~~r~~l~~LL~~ld~~~~~~~-VlVIatTN~~d~Ld-paLlrpgRFd~~I~~~~Pd~-~eR~~Il~ 598 (795)
-|-...+.++..|+..+....+.++ .+|++||...+.+. -.++. .|+..|.+|..+. ++..+++.
T Consensus 616 IGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~--~F~~~i~Vpnl~~~~~~~~vl~ 683 (744)
T KOG0741|consen 616 IGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILD--CFSSTIHVPNLTTGEQLLEVLE 683 (744)
T ss_pred cCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHH--hhhheeecCccCchHHHHHHHH
Confidence 3445566788888888876655544 56667776654432 24445 7999999987665 55555554
No 189
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=98.65 E-value=1.3e-07 Score=110.90 Aligned_cols=135 Identities=21% Similarity=0.281 Sum_probs=78.6
Q ss_pred HHHHHHHHHHhccccccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeeccceeh-hhhccchh-hH--
Q 003795 426 IRLELEEIVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVE-IYVGVGAS-RV-- 499 (795)
Q Consensus 426 ~~~~l~~lv~~~~~~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~se~~~-~~~g~~~~-~l-- 499 (795)
..+.++++...|.+...+.++++.+..| +.|+||||+|||||+++|+|...+..+.+....-.. .|+.+... .+
T Consensus 318 ~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~~~q~~~~~~~~ 397 (530)
T PRK15064 318 NALEVENLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYAQDHAYDFEN 397 (530)
T ss_pred ceEEEEeeEEeeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEcccccccCCC
Confidence 3455666666666656788899999988 889999999999999999998877667665432111 12222110 00
Q ss_pred -HhHHHHHHhc-CCceeEhHHHHHHhhhc---------cCCCCCCcchHHHHHHHHHHhhhcccCCCcEEEE-eccCCCC
Q 003795 500 -RSLYQEAKDN-APSVVFIDELDAVGRER---------GLIKGSGGQERDATLNQLLVCLDGFEGRGNVITI-ASTNRPD 567 (795)
Q Consensus 500 -~~lf~~ar~~-~p~Il~IDEID~l~~~r---------~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVI-atTN~~d 567 (795)
..+.+..... .+. -.-+.++.+.... ....-|||++.+..+...+ ....+++++ .+|+..|
T Consensus 398 ~~t~~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al------~~~p~lllLDEPt~~LD 470 (530)
T PRK15064 398 DLTLFDWMSQWRQEG-DDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLM------MQKPNVLVMDEPTNHMD 470 (530)
T ss_pred CCcHHHHHHHhccCC-ccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHH------hcCCCEEEEcCCCCCCC
Confidence 0111211110 000 0011222222111 1122289999999888877 456677777 7777654
No 190
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=98.64 E-value=4.2e-07 Score=107.88 Aligned_cols=101 Identities=19% Similarity=0.275 Sum_probs=66.4
Q ss_pred cEEEEeccCCC--CCCCccccCCCccc---ceecCCC--C-CHHHHHHHHHHH---HccCCCCChhhH---HHHH---hh
Q 003795 556 NVITIASTNRP--DILDPALVRPGRFD---RKIFIPK--P-GLIGRMEILKVH---ARKKPMADDVDY---LAVA---SM 618 (795)
Q Consensus 556 ~VlVIatTN~~--d~LdpaLlrpgRFd---~~I~~~~--P-d~~eR~~Il~~~---l~~~~~~~d~dl---~~LA---~~ 618 (795)
++.+|+++|.. ..++|+|+. ||+ ..+.|+. | +.+.+..+++.. ++.....+.++- ..+. .+
T Consensus 268 dvrvIa~~~~~~l~~l~~~l~~--rf~~y~v~v~~~~~~~~~~e~~~~~~~~i~~~~~r~G~l~~~s~~Av~~Li~~~~R 345 (608)
T TIGR00764 268 DFILVASGNLDDLEGMHPALRS--RIRGYGYEVYMKDTMPDTPENRDKLVQFVAQEVKKDGRIPHFTRDAVEEIVREAQR 345 (608)
T ss_pred ceEEEEECCHHHHhhcCHHHHH--HhcCCeEEEEeeccCCCCHHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHHHH
Confidence 67888888864 578999998 998 6666543 3 455565555432 222211222222 2222 11
Q ss_pred CC------CCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHH
Q 003795 619 TD------GMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIE 658 (795)
Q Consensus 619 t~------G~sgadL~~lv~~A~~~A~~~~~~~It~edl~~Al~~~ 658 (795)
.. ..+.++|.++++.|...|..++...|+.+|+.+|++..
T Consensus 346 ~ag~r~~lsl~~R~L~~llR~A~~iA~~~~~~~I~~ehV~~Ai~~~ 391 (608)
T TIGR00764 346 RAGRKDHLTLRLRELGGLVRAAGDIAKSSGKVYVTAEHVLKAKKLA 391 (608)
T ss_pred HHhcccccCCCHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHH
Confidence 11 24579999999999888888888899999999998843
No 191
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.63 E-value=2.9e-07 Score=102.09 Aligned_cols=187 Identities=22% Similarity=0.330 Sum_probs=114.0
Q ss_pred CceEEECCCCCchhHHHHHhhhhccccEEEeec----c----------------------------ceehhhhccchhhH
Q 003795 452 GGILLCGPPGVGKTLLAKAVAGEAGVNFFSISA----S----------------------------QFVEIYVGVGASRV 499 (795)
Q Consensus 452 ~giLL~GPpGtGKTtLakaLA~el~~~~~~is~----s----------------------------e~~~~~~g~~~~~l 499 (795)
+|+||-|+.|+||||++|+|+..+..-.+.+.| . .++..-.|.++.++
T Consensus 39 ggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrv 118 (423)
T COG1239 39 GGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDPEEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRL 118 (423)
T ss_pred ceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCChhhhhHHHHhhccccccccccceecceecCCCccchhhh
Confidence 469999999999999999999987443322211 0 11111222222211
Q ss_pred ------HhHHH-H--------HHhcCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhc-----------ccC
Q 003795 500 ------RSLYQ-E--------AKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDG-----------FEG 553 (795)
Q Consensus 500 ------~~lf~-~--------ar~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~-----------~~~ 553 (795)
....+ . ..+.+-+|+++||+..+... +++.||..+.. +..
T Consensus 119 vGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL~d~--------------lvd~LLd~aaeG~n~vereGisi~h 184 (423)
T COG1239 119 VGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLLDDH--------------LVDALLDVAAEGVNDVEREGISIRH 184 (423)
T ss_pred ccccCHHHHHhcCccccCCcchhhccCCEEEEeccccccHH--------------HHHHHHHHHHhCCceeeeCceeecc
Confidence 11111 0 01122359999999776543 67777766553 223
Q ss_pred CCcEEEEeccCCCC-CCCccccCCCcccceecCCCC-CHHHHHHHHHHHHccCCCCChhh--------------------
Q 003795 554 RGNVITIASTNRPD-ILDPALVRPGRFDRKIFIPKP-GLIGRMEILKVHARKKPMADDVD-------------------- 611 (795)
Q Consensus 554 ~~~VlVIatTN~~d-~LdpaLlrpgRFd~~I~~~~P-d~~eR~~Il~~~l~~~~~~~d~d-------------------- 611 (795)
..++++|+|+|... .|-|.|+. ||+..|.+..| +.++|.+|++..+.-. ..++.-
T Consensus 185 pa~fvligTmNPEeGeLrpqLlD--Rfg~~v~~~~~~~~~~rv~Ii~r~~~f~-~~Pe~f~~~~~~~~~~lR~~ii~ar~ 261 (423)
T COG1239 185 PARFLLIGTMNPEEGELRPQLLD--RFGLEVDTHYPLDLEERVEIIRRRLAFE-AVPEAFLEKYADAQRALRARIIAARS 261 (423)
T ss_pred CccEEEEeecCccccccchhhHh--hhcceeeccCCCCHHHHHHHHHHHHHhh-cCcHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46799999999864 68889988 99999988755 6778999988655421 111100
Q ss_pred -----------HHHHHhh----CCCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Q 003795 612 -----------YLAVASM----TDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQ 656 (795)
Q Consensus 612 -----------l~~LA~~----t~G~sgadL~~lv~~A~~~A~~~~~~~It~edl~~Al~ 656 (795)
...++.. .-.-..+++ .+++.|...|+..|+..++.+|+.+|+.
T Consensus 262 ~l~~V~l~~~~~~~ia~~~~~~~v~g~radi-~~~r~a~a~aa~~Gr~~v~~~Di~~a~~ 320 (423)
T COG1239 262 LLSEVELDDDAETKIAELCARLAVDGHRADI-VVVRAAKALAALRGRTEVEEEDIREAAE 320 (423)
T ss_pred ccccccCcHHHHHHHHHHHHHhccCCCchhh-HHHHHHHHHHHhcCceeeehhhHHHHHh
Confidence 1111111 111133444 5556666677788888999999998876
No 192
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.63 E-value=1.1e-07 Score=104.89 Aligned_cols=127 Identities=20% Similarity=0.222 Sum_probs=89.7
Q ss_pred ccCCceEEECCCCCchhHHHHHhhhhcccc------------------------EEEeeccceehhhhccchhhHHhHHH
Q 003795 449 RIPGGILLCGPPGVGKTLLAKAVAGEAGVN------------------------FFSISASQFVEIYVGVGASRVRSLYQ 504 (795)
Q Consensus 449 ~i~~giLL~GPpGtGKTtLakaLA~el~~~------------------------~~~is~se~~~~~~g~~~~~l~~lf~ 504 (795)
++|..+||+||+|+|||++|+++|..+-.. +..+.... . .-....++.+.+
T Consensus 26 ~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i~~~~---~--~i~id~ir~l~~ 100 (329)
T PRK08058 26 RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLVAPDG---Q--SIKKDQIRYLKE 100 (329)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEecccc---c--cCCHHHHHHHHH
Confidence 466778999999999999999999875321 22221110 0 001123455554
Q ss_pred HHHh----cCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcccCCCcEEEEeccCCCCCCCccccCCCccc
Q 003795 505 EAKD----NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFD 580 (795)
Q Consensus 505 ~ar~----~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVIatTN~~d~LdpaLlrpgRFd 580 (795)
.+.. ....|++||++|.+... ..|.||..++ ....++++|.+|+.+..+.|++++ |..
T Consensus 101 ~~~~~~~~~~~kvviI~~a~~~~~~--------------a~NaLLK~LE--EPp~~~~~Il~t~~~~~ll~TIrS--Rc~ 162 (329)
T PRK08058 101 EFSKSGVESNKKVYIIEHADKMTAS--------------AANSLLKFLE--EPSGGTTAILLTENKHQILPTILS--RCQ 162 (329)
T ss_pred HHhhCCcccCceEEEeehHhhhCHH--------------HHHHHHHHhc--CCCCCceEEEEeCChHhCcHHHHh--hce
Confidence 4432 23459999999988654 7899999999 566778888888888899999998 543
Q ss_pred ceecCCCCCHHHHHHHHHH
Q 003795 581 RKIFIPKPGLIGRMEILKV 599 (795)
Q Consensus 581 ~~I~~~~Pd~~eR~~Il~~ 599 (795)
.++|.+|+.++...++..
T Consensus 163 -~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 163 -VVEFRPLPPESLIQRLQE 180 (329)
T ss_pred -eeeCCCCCHHHHHHHHHH
Confidence 899999999888777753
No 193
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.61 E-value=2.2e-07 Score=101.89 Aligned_cols=156 Identities=22% Similarity=0.289 Sum_probs=102.3
Q ss_pred cccCCceEEECCCCCchhHHHHHhhhhccc---------------------cEEEee--ccceehh-hhccchhhHHhHH
Q 003795 448 VRIPGGILLCGPPGVGKTLLAKAVAGEAGV---------------------NFFSIS--ASQFVEI-YVGVGASRVRSLY 503 (795)
Q Consensus 448 l~i~~giLL~GPpGtGKTtLakaLA~el~~---------------------~~~~is--~se~~~~-~~g~~~~~l~~lf 503 (795)
-++|.++||+||.|+||+++|.++|..+-+ ++..+. +++-... ...-....++.+.
T Consensus 23 ~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~ 102 (319)
T PRK08769 23 GRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREIS 102 (319)
T ss_pred CCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHHH
Confidence 356778999999999999999999975522 122221 1100000 0001123345555
Q ss_pred HHHHhc----CCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcccCCCcEEEEeccCCCCCCCccccCCCcc
Q 003795 504 QEAKDN----APSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRF 579 (795)
Q Consensus 504 ~~ar~~----~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVIatTN~~d~LdpaLlrpgRF 579 (795)
+.+... ...|++||++|.+... ..|.||..++ ....++++|..|+.++.|.|.+++ |.
T Consensus 103 ~~~~~~p~~g~~kV~iI~~ae~m~~~--------------AaNaLLKtLE--EPp~~~~fiL~~~~~~~lLpTIrS--RC 164 (319)
T PRK08769 103 QKLALTPQYGIAQVVIVDPADAINRA--------------ACNALLKTLE--EPSPGRYLWLISAQPARLPATIRS--RC 164 (319)
T ss_pred HHHhhCcccCCcEEEEeccHhhhCHH--------------HHHHHHHHhh--CCCCCCeEEEEECChhhCchHHHh--hh
Confidence 544332 2359999999999654 7899999999 566788888889999999999999 65
Q ss_pred cceecCCCCCHHHHHHHHHHHHccCCCCChhhHHHHHhhCCCCcHHHH
Q 003795 580 DRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAEL 627 (795)
Q Consensus 580 d~~I~~~~Pd~~eR~~Il~~~l~~~~~~~d~dl~~LA~~t~G~sgadL 627 (795)
. .+.|++|+.++-...+... .. +..+...++..+.|..+..+
T Consensus 165 q-~i~~~~~~~~~~~~~L~~~----~~-~~~~a~~~~~l~~G~p~~A~ 206 (319)
T PRK08769 165 Q-RLEFKLPPAHEALAWLLAQ----GV-SERAAQEALDAARGHPGLAA 206 (319)
T ss_pred e-EeeCCCcCHHHHHHHHHHc----CC-ChHHHHHHHHHcCCCHHHHH
Confidence 4 7889999998777766532 22 22234455666666555444
No 194
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.60 E-value=1e-06 Score=90.93 Aligned_cols=168 Identities=21% Similarity=0.302 Sum_probs=115.7
Q ss_pred cCccccccCccCchHHHHHHHHHHHhccccccccccCcccCCceEEECCCCCchhHHHHHhhhhc---cccEEEeeccce
Q 003795 411 RGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQF 487 (795)
Q Consensus 411 ~~~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el---~~~~~~is~se~ 487 (795)
....+.+.++.|.+.++..+-+-...|... .+..++||+|..|||||+|+|++.++. +..+++|+-.++
T Consensus 53 ~~~~i~L~~l~Gvd~qk~~L~~NT~~F~~G--------~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl 124 (287)
T COG2607 53 DPDPIDLADLVGVDRQKEALVRNTEQFAEG--------LPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDL 124 (287)
T ss_pred CCCCcCHHHHhCchHHHHHHHHHHHHHHcC--------CcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHH
Confidence 345688889999999887776655554321 122459999999999999999998866 566777776654
Q ss_pred ehhhhccchhhHHhHHHHHHhcC-CceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhccc--CCCcEEEEeccC
Q 003795 488 VEIYVGVGASRVRSLYQEAKDNA-PSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE--GRGNVITIASTN 564 (795)
Q Consensus 488 ~~~~~g~~~~~l~~lf~~ar~~~-p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~--~~~~VlVIatTN 564 (795)
.. +-.+++..+..+ .-|+|.|++-.= .+ ......|-..++|-. ...||+|.+|+|
T Consensus 125 ~~---------Lp~l~~~Lr~~~~kFIlFcDDLSFe---------~g----d~~yK~LKs~LeG~ve~rP~NVl~YATSN 182 (287)
T COG2607 125 AT---------LPDLVELLRARPEKFILFCDDLSFE---------EG----DDAYKALKSALEGGVEGRPANVLFYATSN 182 (287)
T ss_pred hh---------HHHHHHHHhcCCceEEEEecCCCCC---------CC----chHHHHHHHHhcCCcccCCCeEEEEEecC
Confidence 33 334666665443 347888876211 11 114445555566532 357899999999
Q ss_pred CCCCCCcc--------------------ccCCCcccceecCCCCCHHHHHHHHHHHHccCCCCC
Q 003795 565 RPDILDPA--------------------LVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMAD 608 (795)
Q Consensus 565 ~~d~Ldpa--------------------LlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~~~~~ 608 (795)
+-..++.. +--+.||+..+.|.+++.++-..|+..+++...+.-
T Consensus 183 RRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~ 246 (287)
T COG2607 183 RRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDI 246 (287)
T ss_pred CcccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCC
Confidence 87655421 112359999999999999999999999998776553
No 195
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=98.60 E-value=3.5e-07 Score=96.27 Aligned_cols=129 Identities=22% Similarity=0.283 Sum_probs=90.9
Q ss_pred cCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcccCCCcEEEEeccCC-------------CCCCCccccC
Q 003795 509 NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNR-------------PDILDPALVR 575 (795)
Q Consensus 509 ~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVIatTN~-------------~d~LdpaLlr 575 (795)
.-|+++||||++.+--. .|..|-..++.-. .-+||.+||+ |.-+++.|+.
T Consensus 295 lvPGVLFIDEVhMLDiE--------------cFTyL~kalES~i---aPivifAsNrG~~~irGt~d~~sPhGip~dllD 357 (456)
T KOG1942|consen 295 LVPGVLFIDEVHMLDIE--------------CFTYLHKALESPI---APIVIFASNRGMCTIRGTEDILSPHGIPPDLLD 357 (456)
T ss_pred hcCcceEeeehhhhhhH--------------HHHHHHHHhcCCC---CceEEEecCCcceeecCCcCCCCCCCCCHHHhh
Confidence 44889999999887433 5666666666322 2256666665 3456777776
Q ss_pred CCcccceecCCCCCHHHHHHHHHHHHccCCCC-ChhhHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHH
Q 003795 576 PGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQA 654 (795)
Q Consensus 576 pgRFd~~I~~~~Pd~~eR~~Il~~~l~~~~~~-~d~dl~~LA~~t~G~sgadL~~lv~~A~~~A~~~~~~~It~edl~~A 654 (795)
|+- +|..-+++.++.++|++.......+. ++.-+..++.....-|-+-..+|+.-|.+.|...|+..|+.+|+.++
T Consensus 358 --Rl~-Iirt~~y~~~e~r~Ii~~Ra~~E~l~~~e~a~~~l~~~gt~tsLRy~vqLl~p~~~~ak~~g~~~i~v~dvee~ 434 (456)
T KOG1942|consen 358 --RLL-IIRTLPYDEEEIRQIIKIRAQVEGLQVEEEALDLLAEIGTSTSLRYAVQLLTPASILAKTNGRKEISVEDVEEV 434 (456)
T ss_pred --hee-EEeeccCCHHHHHHHHHHHHhhhcceecHHHHHHHHhhccchhHHHHHHhcCHHHHHHHHcCCceeecccHHHH
Confidence 553 55666788899999999887665544 33346667776666666777788887888888889999999999988
Q ss_pred HHH
Q 003795 655 AQI 657 (795)
Q Consensus 655 l~~ 657 (795)
-..
T Consensus 435 ~~L 437 (456)
T KOG1942|consen 435 TEL 437 (456)
T ss_pred HHH
Confidence 653
No 196
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.58 E-value=9.4e-09 Score=97.19 Aligned_cols=103 Identities=29% Similarity=0.441 Sum_probs=59.0
Q ss_pred eEEECCCCCchhHHHHHhhhhccccEEEeeccc-eehh-hhc-----cchhhH----HhHHHHHHhcCCceeEhHHHHHH
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQ-FVEI-YVG-----VGASRV----RSLYQEAKDNAPSVVFIDELDAV 522 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el~~~~~~is~se-~~~~-~~g-----~~~~~l----~~lf~~ar~~~p~Il~IDEID~l 522 (795)
+||.|+||+|||++++++|+.++..|.+|.+.. +.-. ..| .....+ .-+| ..|+++|||...
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif-------~~ill~DEiNra 74 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIF-------TNILLADEINRA 74 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT--------SSEEEEETGGGS
T ss_pred EeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhh-------hceeeecccccC
Confidence 799999999999999999999999999987752 2211 111 111100 1111 248999999887
Q ss_pred hhhccCCCCCCcchHHHHHHHHHHhhhcc---------cCCCcEEEEeccCCCC-----CCCccccCCCcc
Q 003795 523 GRERGLIKGSGGQERDATLNQLLVCLDGF---------EGRGNVITIASTNRPD-----ILDPALVRPGRF 579 (795)
Q Consensus 523 ~~~r~~~~~Sgge~~r~~l~~LL~~ld~~---------~~~~~VlVIatTN~~d-----~LdpaLlrpgRF 579 (795)
.++ +...||+.|... .-...++||+|-|..+ .++.+++. ||
T Consensus 75 ppk--------------tQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~D--RF 129 (131)
T PF07726_consen 75 PPK--------------TQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLD--RF 129 (131)
T ss_dssp -HH--------------HHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHT--TS
T ss_pred CHH--------------HHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhc--cc
Confidence 665 777888777642 1234589999999876 47777777 66
No 197
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.58 E-value=1.1e-06 Score=94.65 Aligned_cols=213 Identities=17% Similarity=0.265 Sum_probs=123.1
Q ss_pred cCchHHHHHHHHHHHhccccccccccCcccCCceEEECCCCCchhHHHHHhhhhc---------cccEEEeeccceehh-
Q 003795 421 AGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEA---------GVNFFSISASQFVEI- 490 (795)
Q Consensus 421 ~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el---------~~~~~~is~se~~~~- 490 (795)
.|+......++.+...+..+... -..+++|+|++|.|||++++..+..- ..|++.+.+..--+.
T Consensus 37 IgY~~A~~~L~~L~~Ll~~P~~~------Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~ 110 (302)
T PF05621_consen 37 IGYPRAKEALDRLEELLEYPKRH------RMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDER 110 (302)
T ss_pred ecCHHHHHHHHHHHHHHhCCccc------CCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChH
Confidence 35566665566555555444221 13459999999999999999998643 235555554332211
Q ss_pred --h------hc------cchhh-HHhHHHHHHhcCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcccCCC
Q 003795 491 --Y------VG------VGASR-VRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRG 555 (795)
Q Consensus 491 --~------~g------~~~~~-l~~lf~~ar~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~ 555 (795)
| .| ..... -..+..-.+...+.+++|||++.++.. ...+.+..++.| ..+ .+.-
T Consensus 111 ~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaG-------s~~~qr~~Ln~L-K~L---~NeL 179 (302)
T PF05621_consen 111 RFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAG-------SYRKQREFLNAL-KFL---GNEL 179 (302)
T ss_pred HHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcc-------cHHHHHHHHHHH-HHH---hhcc
Confidence 1 00 01111 122345556778889999999997542 122233333332 222 2233
Q ss_pred c--EEEEeccCCCC--CCCccccCCCcccceecCCCCCH-HHHHHHHHHHHccCCCC-----ChhhH-HHHHhhCCCCcH
Q 003795 556 N--VITIASTNRPD--ILDPALVRPGRFDRKIFIPKPGL-IGRMEILKVHARKKPMA-----DDVDY-LAVASMTDGMVG 624 (795)
Q Consensus 556 ~--VlVIatTN~~d--~LdpaLlrpgRFd~~I~~~~Pd~-~eR~~Il~~~l~~~~~~-----~d~dl-~~LA~~t~G~sg 624 (795)
+ ++.++|-.-.. .-|+.+-+ ||+ .+.+|.-.. ++...++..+-...++. .+.++ ..|-..|.|. .
T Consensus 180 ~ipiV~vGt~~A~~al~~D~QLa~--RF~-~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~-i 255 (302)
T PF05621_consen 180 QIPIVGVGTREAYRALRTDPQLAS--RFE-PFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGL-I 255 (302)
T ss_pred CCCeEEeccHHHHHHhccCHHHHh--ccC-CccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCc-h
Confidence 3 44444432211 34677777 997 566665332 23455665554444332 11222 3445566664 4
Q ss_pred HHHHHHHHHHHHHHHHcCCCccCHHHHHHH
Q 003795 625 AELANIVEVAAINMMRDGRTEITTDDLLQA 654 (795)
Q Consensus 625 adL~~lv~~A~~~A~~~~~~~It~edl~~A 654 (795)
+++..+++.|+..|.+.|...||.+.+..+
T Consensus 256 G~l~~ll~~aA~~AI~sG~E~It~~~l~~~ 285 (302)
T PF05621_consen 256 GELSRLLNAAAIAAIRSGEERITREILDKI 285 (302)
T ss_pred HHHHHHHHHHHHHHHhcCCceecHHHHhhC
Confidence 588899999999999999999999998875
No 198
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=1.3e-07 Score=104.17 Aligned_cols=95 Identities=35% Similarity=0.554 Sum_probs=67.1
Q ss_pred ceEEECCCCCchhHHHHHhhhhccccEEEeeccceeh-hhhccchhhH-HhHHHHHH----hcCCceeEhHHHHHHhhhc
Q 003795 453 GILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVE-IYVGVGASRV-RSLYQEAK----DNAPSVVFIDELDAVGRER 526 (795)
Q Consensus 453 giLL~GPpGtGKTtLakaLA~el~~~~~~is~se~~~-~~~g~~~~~l-~~lf~~ar----~~~p~Il~IDEID~l~~~r 526 (795)
+|||.||+|+|||.|++.||.-+++||.-.+|..+.. .|+|.....+ ..+++.|. ...-+|+||||+|++....
T Consensus 228 NvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~~ 307 (564)
T KOG0745|consen 228 NVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKKA 307 (564)
T ss_pred cEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhcccC
Confidence 3999999999999999999999999999999998765 4888776543 44444432 2234599999999997432
Q ss_pred cCCC---CCCcchHHHHHHHHHHhhhc
Q 003795 527 GLIK---GSGGQERDATLNQLLVCLDG 550 (795)
Q Consensus 527 ~~~~---~Sgge~~r~~l~~LL~~ld~ 550 (795)
.... +-+|+. +...||..+++
T Consensus 308 ~~i~~~RDVsGEG---VQQaLLKllEG 331 (564)
T KOG0745|consen 308 ESIHTSRDVSGEG---VQQALLKLLEG 331 (564)
T ss_pred ccccccccccchh---HHHHHHHHhcc
Confidence 2111 123333 55566666665
No 199
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.57 E-value=4.2e-07 Score=107.58 Aligned_cols=203 Identities=12% Similarity=0.105 Sum_probs=110.6
Q ss_pred ccccCccccccCccCchHHHHHHHHHHHhccccccccccCcccCCceEEECCCCCchhHHHHHhhhhccccEEEe-ecc-
Q 003795 408 YLERGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSI-SAS- 485 (795)
Q Consensus 408 ~~~~~~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~i-s~s- 485 (795)
+.++..+..++++.+..+.+..+..++.... ++......++|+||||+||||+++++|+.++..+... +..
T Consensus 74 W~eKyrP~~ldel~~~~~ki~~l~~~l~~~~-------~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~ 146 (637)
T TIGR00602 74 WVEKYKPETQHELAVHKKKIEEVETWLKAQV-------LENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTL 146 (637)
T ss_pred hHHHhCCCCHHHhcCcHHHHHHHHHHHHhcc-------cccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhh
Confidence 4456677888999988888776666554321 1111122389999999999999999999887654331 110
Q ss_pred --ceehhh------------hccchhhHHhHHHHHHh----------cCCceeEhHHHHHHhhhccCCCCCCcchHHHHH
Q 003795 486 --QFVEIY------------VGVGASRVRSLYQEAKD----------NAPSVVFIDELDAVGRERGLIKGSGGQERDATL 541 (795)
Q Consensus 486 --e~~~~~------------~g~~~~~l~~lf~~ar~----------~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l 541 (795)
.....| +......+..++..+.. ....||+|||++.+.... ...+
T Consensus 147 ~~~~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r~-----------~~~l 215 (637)
T TIGR00602 147 PDFQKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYRD-----------TRAL 215 (637)
T ss_pred hcccccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchhh-----------HHHH
Confidence 000000 01111223344444431 234699999998764320 1134
Q ss_pred HHHHH-hhhcccCCCcEEEEeccC-CCC--------------CCCccccCCCcccceecCCCCCHHHHHHHHHHHHccCC
Q 003795 542 NQLLV-CLDGFEGRGNVITIASTN-RPD--------------ILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKP 605 (795)
Q Consensus 542 ~~LL~-~ld~~~~~~~VlVIatTN-~~d--------------~LdpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~~ 605 (795)
..+|. ... ..+.+.+|++++ .+. .+.+++++..|.. +|.|++.+.......|...+....
T Consensus 216 q~lLr~~~~---e~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv~-~I~FnPia~t~l~K~L~rIl~~E~ 291 (637)
T TIGR00602 216 HEILRWKYV---SIGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRVS-NISFNPIAPTIMKKFLNRIVTIEA 291 (637)
T ss_pred HHHHHHHhh---cCCCceEEEEecCCccccccccccccchhcccCHhHhccccee-EEEeCCCCHHHHHHHHHHHHHhhh
Confidence 44444 221 123333333222 111 1336777533443 789999999997776666554321
Q ss_pred --------CCChhhHHHHHhhCCCCcHHHHHHHHHHHHH
Q 003795 606 --------MADDVDYLAVASMTDGMVGAELANIVEVAAI 636 (795)
Q Consensus 606 --------~~~d~dl~~LA~~t~G~sgadL~~lv~~A~~ 636 (795)
+.....+..|+.... +|++.+++.-..
T Consensus 292 ~~~~~~~~~p~~~~l~~I~~~s~----GDiRsAIn~LQf 326 (637)
T TIGR00602 292 KKNGEKIKVPKKTSVELLCQGCS----GDIRSAINSLQF 326 (637)
T ss_pred hccccccccCCHHHHHHHHHhCC----ChHHHHHHHHHH
Confidence 112234666776555 466555554433
No 200
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.56 E-value=1e-06 Score=106.59 Aligned_cols=126 Identities=22% Similarity=0.254 Sum_probs=73.8
Q ss_pred ceEEECCCCCchhHHHHHhhhhccc-------cEEEeeccceehhhhccchhhHHhHHH--HHHhcCCceeEhHHHHHHh
Q 003795 453 GILLCGPPGVGKTLLAKAVAGEAGV-------NFFSISASQFVEIYVGVGASRVRSLYQ--EAKDNAPSVVFIDELDAVG 523 (795)
Q Consensus 453 giLL~GPpGtGKTtLakaLA~el~~-------~~~~is~se~~~~~~g~~~~~l~~lf~--~ar~~~p~Il~IDEID~l~ 523 (795)
.|||+|.||||||++|++++..... ++..+.+..... +.+...+.. .++ .......++++|||++.+.
T Consensus 494 hVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~vgLTa~~~-~~d~~tG~~--~le~GaLvlAdgGtL~IDEidkms 570 (915)
T PTZ00111 494 NVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSVGLTASIK-FNESDNGRA--MIQPGAVVLANGGVCCIDELDKCH 570 (915)
T ss_pred eEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccccccchhh-hcccccCcc--cccCCcEEEcCCCeEEecchhhCC
Confidence 4999999999999999999875432 222222221110 000000000 000 0011224689999999985
Q ss_pred hhccCCCCCCcchHHHHHHHHHHhhhccc-----------CCCcEEEEeccCCCC-------------CCCccccCCCcc
Q 003795 524 RERGLIKGSGGQERDATLNQLLVCLDGFE-----------GRGNVITIASTNRPD-------------ILDPALVRPGRF 579 (795)
Q Consensus 524 ~~r~~~~~Sgge~~r~~l~~LL~~ld~~~-----------~~~~VlVIatTN~~d-------------~LdpaLlrpgRF 579 (795)
.. ....|+..|+.-. -+.++.||+|+|+.. .|+++|++ ||
T Consensus 571 ~~--------------~Q~aLlEaMEqqtIsI~KaGi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLS--RF 634 (915)
T PTZ00111 571 NE--------------SRLSLYEVMEQQTVTIAKAGIVATLKAETAILASCNPINSRYNKNKAVIENINISPSLFT--RF 634 (915)
T ss_pred HH--------------HHHHHHHHHhCCEEEEecCCcceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhh--hh
Confidence 44 4555665554311 135789999999852 47899999 99
Q ss_pred cceec-CCCCCHHHHHHHH
Q 003795 580 DRKIF-IPKPGLIGRMEIL 597 (795)
Q Consensus 580 d~~I~-~~~Pd~~eR~~Il 597 (795)
|.++. ++.|+.+.-..|.
T Consensus 635 DLIf~l~D~~d~~~D~~lA 653 (915)
T PTZ00111 635 DLIYLVLDHIDQDTDQLIS 653 (915)
T ss_pred cEEEEecCCCChHHHHHHH
Confidence 97654 4567765544443
No 201
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.53 E-value=2.7e-07 Score=101.05 Aligned_cols=130 Identities=24% Similarity=0.317 Sum_probs=93.1
Q ss_pred cccCCceEEECCCCCchhHHHHHhhhhcc-----------------------ccEEEeeccceehhhhccchhhHHhHHH
Q 003795 448 VRIPGGILLCGPPGVGKTLLAKAVAGEAG-----------------------VNFFSISASQFVEIYVGVGASRVRSLYQ 504 (795)
Q Consensus 448 l~i~~giLL~GPpGtGKTtLakaLA~el~-----------------------~~~~~is~se~~~~~~g~~~~~l~~lf~ 504 (795)
-++|.+++|+||.|+||+++|+.+|..+- +++..+....- ... -....++.+.+
T Consensus 22 ~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~-~~~--I~vdqiR~l~~ 98 (319)
T PRK06090 22 GRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKE-GKS--ITVEQIRQCNR 98 (319)
T ss_pred CCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcC-CCc--CCHHHHHHHHH
Confidence 35677899999999999999999988552 12323322110 000 01123455444
Q ss_pred HHHh----cCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcccCCCcEEEEeccCCCCCCCccccCCCccc
Q 003795 505 EAKD----NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFD 580 (795)
Q Consensus 505 ~ar~----~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVIatTN~~d~LdpaLlrpgRFd 580 (795)
.+.. ....|++||++|.+... ..|.||..++ .+..++++|..|+.++.+.|.+++ |..
T Consensus 99 ~~~~~~~~~~~kV~iI~~ae~m~~~--------------AaNaLLKtLE--EPp~~t~fiL~t~~~~~lLpTI~S--RCq 160 (319)
T PRK06090 99 LAQESSQLNGYRLFVIEPADAMNES--------------ASNALLKTLE--EPAPNCLFLLVTHNQKRLLPTIVS--RCQ 160 (319)
T ss_pred HHhhCcccCCceEEEecchhhhCHH--------------HHHHHHHHhc--CCCCCeEEEEEECChhhChHHHHh--cce
Confidence 4432 33569999999998654 7899999999 677889999999999999999999 654
Q ss_pred ceecCCCCCHHHHHHHHHH
Q 003795 581 RKIFIPKPGLIGRMEILKV 599 (795)
Q Consensus 581 ~~I~~~~Pd~~eR~~Il~~ 599 (795)
.+.|++|+.++..+.+..
T Consensus 161 -~~~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 161 -QWVVTPPSTAQAMQWLKG 178 (319)
T ss_pred -eEeCCCCCHHHHHHHHHH
Confidence 889999999888777653
No 202
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=98.51 E-value=7.7e-08 Score=98.42 Aligned_cols=142 Identities=26% Similarity=0.327 Sum_probs=63.7
Q ss_pred ccCccCchHHHHHHHHHHHhccccccccccCcccCCceEEECCCCCchhHHHHHhhhhccccEEE----------eec--
Q 003795 417 FSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFS----------ISA-- 484 (795)
Q Consensus 417 f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~----------is~-- 484 (795)
|.++.|.+..+..+.-+... ..+++|+||||||||++|+.+...+..-... +..
T Consensus 2 f~dI~GQe~aKrAL~iAAaG--------------~h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~~~ 67 (206)
T PF01078_consen 2 FSDIVGQEEAKRALEIAAAG--------------GHHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAGLG 67 (206)
T ss_dssp TCCSSSTHHHHHHHHHHHHC--------------C--EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT---S
T ss_pred hhhhcCcHHHHHHHHHHHcC--------------CCCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhccccccccCC
Confidence 77888988887666544431 2369999999999999999999866321110 000
Q ss_pred --------cceehhhhccchhhHHhHHH--------HHHhcCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhh
Q 003795 485 --------SQFVEIYVGVGASRVRSLYQ--------EAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCL 548 (795)
Q Consensus 485 --------se~~~~~~g~~~~~l~~lf~--------~ar~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~l 548 (795)
-.|.......+. ..++. .+.....+|+|+||+-.+-. .++..|.+-+
T Consensus 68 ~~~~~~~~~Pfr~phhs~s~---~~liGgg~~~~PGeislAh~GVLflDE~~ef~~--------------~vld~Lr~pl 130 (206)
T PF01078_consen 68 PDEGLIRQRPFRAPHHSASE---AALIGGGRPPRPGEISLAHRGVLFLDELNEFDR--------------SVLDALRQPL 130 (206)
T ss_dssp ---EEEE---EEEE-TT--H---HHHHEEGGGEEE-CGGGGTTSEEEECETTTS-H--------------HHHHHHHHHH
T ss_pred CCCceecCCCcccCCCCcCH---HHHhCCCcCCCcCHHHHhcCCEEEechhhhcCH--------------HHHHHHHHHH
Confidence 000000000000 00110 01122345999999966543 3888888888
Q ss_pred hccc-----------CCCcEEEEeccCCC-----------------------CCCCccccCCCcccceecCCCCCHH
Q 003795 549 DGFE-----------GRGNVITIASTNRP-----------------------DILDPALVRPGRFDRKIFIPKPGLI 591 (795)
Q Consensus 549 d~~~-----------~~~~VlVIatTN~~-----------------------d~LdpaLlrpgRFd~~I~~~~Pd~~ 591 (795)
+.-. -..++++|+|+|.= ..+...|+. |||..+.++..+.+
T Consensus 131 e~g~v~i~R~~~~~~~Pa~f~lv~a~NPcpCG~~~~~~~~C~Cs~~~~~~Y~~rlsgpllD--RiDi~v~~~~~~~~ 205 (206)
T PF01078_consen 131 EDGEVTISRAGGSVTYPARFLLVAAMNPCPCGYYGDPDNRCRCSPRQIRRYQSRLSGPLLD--RIDIHVEVPRVSYE 205 (206)
T ss_dssp HHSBEEEEETTEEEEEB--EEEEEEE-S-------------------------------------------------
T ss_pred HCCeEEEEECCceEEEecccEEEEEeccccccccccccccccccccccccccccccccccc--cccccccccccccC
Confidence 6421 23578999999852 135556766 88887777766544
No 203
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=98.50 E-value=7.5e-07 Score=103.96 Aligned_cols=207 Identities=21% Similarity=0.299 Sum_probs=121.9
Q ss_pred ccccCccCchHHHHHHHHHHHhccccccccccCcccCCceEEECCCCCchhHHHHHhhhh-----------ccccEEEee
Q 003795 415 VKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGE-----------AGVNFFSIS 483 (795)
Q Consensus 415 ~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~e-----------l~~~~~~is 483 (795)
..|+++.|....+..+.+.+..+... ...|+|+|++||||+++|++|-.. .+.||+.++
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~A~s----------~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~in 285 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLYARS----------SAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVN 285 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHHhCC----------CCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEee
Confidence 45777888888887777777655321 234899999999999999999765 467999999
Q ss_pred ccceehh-----hhccchhh--------HHhHHHHHHhcCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhc
Q 003795 484 ASQFVEI-----YVGVGASR--------VRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDG 550 (795)
Q Consensus 484 ~se~~~~-----~~g~~~~~--------l~~lf~~ar~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~ 550 (795)
|+.+.+. .+|...+. -..+|+.+ ..+.+|||||+.+... ....|+..++.
T Consensus 286 Caal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A---~gGTLfLdeI~~Lp~~--------------~Q~kLl~~L~e 348 (538)
T PRK15424 286 CGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIA---HGGTLFLDEIGEMPLP--------------LQTRLLRVLEE 348 (538)
T ss_pred cccCChhhHHHHhcCCccccccCccccccCCchhcc---CCCEEEEcChHhCCHH--------------HHHHHHhhhhc
Confidence 9876433 22321111 01234433 3458999999998654 56667666653
Q ss_pred cc---------CCCcEEEEeccCCCCCCCccccCCCcccc-------eecCCCCCHHHHHH----HHHHHHcc----C--
Q 003795 551 FE---------GRGNVITIASTNRPDILDPALVRPGRFDR-------KIFIPKPGLIGRME----ILKVHARK----K-- 604 (795)
Q Consensus 551 ~~---------~~~~VlVIatTN~~d~LdpaLlrpgRFd~-------~I~~~~Pd~~eR~~----Il~~~l~~----~-- 604 (795)
.. -..++-+|++||.. +. .+...|+|.. .+.+..|...+|.+ ++++++.. .
T Consensus 349 ~~~~r~G~~~~~~~dvRiIaat~~~--L~-~~v~~g~Fr~dL~yrL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~ 425 (538)
T PRK15424 349 KEVTRVGGHQPVPVDVRVISATHCD--LE-EDVRQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKQSLAALSA 425 (538)
T ss_pred CeEEecCCCceeccceEEEEecCCC--HH-HHHhcccchHHHHHHhcCCeecCCChhhchhHHHHHHHHHHHHHHHHcCC
Confidence 11 12356788888753 11 1222233331 35566676666653 44555543 1
Q ss_pred CCCChhh------HHHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCccCHHHH
Q 003795 605 PMADDVD------YLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDL 651 (795)
Q Consensus 605 ~~~~d~d------l~~LA~~t~G~sgadL~~lv~~A~~~A~~~~~~~It~edl 651 (795)
.+.++.- +..|..+.--.+.++|.+++.+++..+.......++.+++
T Consensus 426 ~~~~~a~~~~~~a~~~L~~y~WPGNvREL~nvier~~i~~~~~~~~~i~~~~l 478 (538)
T PRK15424 426 PFSAALRQGLQQCETLLLHYDWPGNVRELRNLMERLALFLSVEPTPDLTPQFL 478 (538)
T ss_pred CCCHHHHHhhHHHHHHHHhCCCCchHHHHHHHHHHHHHhcCCCCcCccCHHHh
Confidence 1221110 1234444444567899999998876442222234555554
No 204
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=98.49 E-value=8.7e-07 Score=97.90 Aligned_cols=167 Identities=21% Similarity=0.210 Sum_probs=98.5
Q ss_pred CceEEECCCCCchhHHHHHhhhhc---cccEEEeeccceehh-----hhccchhh-------HHhHHHHHHhcCCceeEh
Q 003795 452 GGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEI-----YVGVGASR-------VRSLYQEAKDNAPSVVFI 516 (795)
Q Consensus 452 ~giLL~GPpGtGKTtLakaLA~el---~~~~~~is~se~~~~-----~~g~~~~~-------l~~lf~~ar~~~p~Il~I 516 (795)
..|+|+|++||||+++|++|-... +.+|+.++|+.+... .+|...+. -..+|+.+ ..+.+||
T Consensus 23 ~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~lfG~~~g~~~ga~~~~~G~~~~a---~gGtL~L 99 (329)
T TIGR02974 23 RPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSELFGHEAGAFTGAQKRHQGRFERA---DGGTLFL 99 (329)
T ss_pred CCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHHhccccccccCcccccCCchhhC---CCCEEEe
Confidence 348999999999999999996543 569999999865332 12211110 01123332 3568999
Q ss_pred HHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhccc---------CCCcEEEEeccCCC-------CCCCccccCCCccc
Q 003795 517 DELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE---------GRGNVITIASTNRP-------DILDPALVRPGRFD 580 (795)
Q Consensus 517 DEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~---------~~~~VlVIatTN~~-------d~LdpaLlrpgRFd 580 (795)
|||+.+... ....|+..++... ...++.+|++||.. ..+.+.|.. ||.
T Consensus 100 dei~~L~~~--------------~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l~~~~~~g~fr~dL~~--rl~ 163 (329)
T TIGR02974 100 DELATASLL--------------VQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAAEGRFRADLLD--RLA 163 (329)
T ss_pred CChHhCCHH--------------HHHHHHHHHHcCcEEecCCCceeccceEEEEechhhHHHHhhcCchHHHHHH--Hhc
Confidence 999998654 5666666665321 12457888888753 123344444 553
Q ss_pred ceecCCCCCHHHHHH----HHHHHHccC------CC---CChhhHHHHHhhCCCCcHHHHHHHHHHHHHHH
Q 003795 581 RKIFIPKPGLIGRME----ILKVHARKK------PM---ADDVDYLAVASMTDGMVGAELANIVEVAAINM 638 (795)
Q Consensus 581 ~~I~~~~Pd~~eR~~----Il~~~l~~~------~~---~~d~dl~~LA~~t~G~sgadL~~lv~~A~~~A 638 (795)
.+.|..|...+|.+ ++++++... .. .....+..|..+.---+.++|.+++..++..+
T Consensus 164 -~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvrEL~n~i~~~~~~~ 233 (329)
T TIGR02974 164 -FDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLLEYHWPGNVRELKNVVERSVYRH 233 (329)
T ss_pred -chhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHhCCCCchHHHHHHHHHHHHHhC
Confidence 34455555555543 444444321 11 12223455555554556788888888777543
No 205
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.49 E-value=4.6e-07 Score=101.24 Aligned_cols=197 Identities=23% Similarity=0.259 Sum_probs=117.0
Q ss_pred ccccccCccCchHHHHHHHHHHHhccccccccccCcccCCceEEECCCCCchhHHHHHhhh---h-ccccEEEeecccee
Q 003795 413 VDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAG---E-AGVNFFSISASQFV 488 (795)
Q Consensus 413 ~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~---e-l~~~~~~is~se~~ 488 (795)
....+.+..|-......+.+-++.+. ..| ..||++|++||||+.+|+.|.. . .+.||+.++|+.+.
T Consensus 73 ~~~~~~~LIG~~~~~~~~~eqik~~a------p~~----~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~ 142 (403)
T COG1221 73 KSEALDDLIGESPSLQELREQIKAYA------PSG----LPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYS 142 (403)
T ss_pred cchhhhhhhccCHHHHHHHHHHHhhC------CCC----CcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhC
Confidence 34556667777777766666666532 111 2389999999999999999864 2 36799999999877
Q ss_pred hhh-----hccchh-------hHHhHHHHHHhcCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcc-----
Q 003795 489 EIY-----VGVGAS-------RVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGF----- 551 (795)
Q Consensus 489 ~~~-----~g~~~~-------~l~~lf~~ar~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~----- 551 (795)
+.. +|...+ .-..+|+.| ..+.+|+|||..+-.. ....|+..|+..
T Consensus 143 en~~~~eLFG~~kGaftGa~~~k~Glfe~A---~GGtLfLDEI~~LP~~--------------~Q~kLl~~le~g~~~rv 205 (403)
T COG1221 143 ENLQEAELFGHEKGAFTGAQGGKAGLFEQA---NGGTLFLDEIHRLPPE--------------GQEKLLRVLEEGEYRRV 205 (403)
T ss_pred cCHHHHHHhccccceeecccCCcCchheec---CCCEEehhhhhhCCHh--------------HHHHHHHHHHcCceEec
Confidence 652 221111 112345544 3458999999988654 566677766651
Q ss_pred ----cCCCcEEEEeccCCC--CCCCc--cccCCCcccceecCCCCCHHHHH----HHHHHHH----ccCCCCC--hh--h
Q 003795 552 ----EGRGNVITIASTNRP--DILDP--ALVRPGRFDRKIFIPKPGLIGRM----EILKVHA----RKKPMAD--DV--D 611 (795)
Q Consensus 552 ----~~~~~VlVIatTN~~--d~Ldp--aLlrpgRFd~~I~~~~Pd~~eR~----~Il~~~l----~~~~~~~--d~--d 611 (795)
....+|.+|+|||.. +.+-. .|.+. |+...|.+ |+..+|. .++.+++ ++..... .. -
T Consensus 206 G~~~~~~~dVRli~AT~~~l~~~~~~g~dl~~r-l~~~~I~L--PpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a 282 (403)
T COG1221 206 GGSQPRPVDVRLICATTEDLEEAVLAGADLTRR-LNILTITL--PPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEA 282 (403)
T ss_pred CCCCCcCCCceeeeccccCHHHHHHhhcchhhh-hcCceecC--CChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHH
Confidence 123578999888642 22222 34331 34434444 5555543 3444443 3332221 11 2
Q ss_pred HHHHHhhCCCCcHHHHHHHHHHHHHHHH
Q 003795 612 YLAVASMTDGMVGAELANIVEVAAINMM 639 (795)
Q Consensus 612 l~~LA~~t~G~sgadL~~lv~~A~~~A~ 639 (795)
...+-.+.---+.++|.+++..++..+.
T Consensus 283 ~~~L~~y~~pGNirELkN~Ve~~~~~~~ 310 (403)
T COG1221 283 LRALLAYDWPGNIRELKNLVERAVAQAS 310 (403)
T ss_pred HHHHHhCCCCCcHHHHHHHHHHHHHHhc
Confidence 3334444434467899999999887663
No 206
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=98.48 E-value=8.2e-07 Score=101.06 Aligned_cols=212 Identities=24% Similarity=0.262 Sum_probs=131.5
Q ss_pred CccccccCccCchHHHHHHHHHHHhccccccccccCcccCCceEEECCCCCchhHHHHHhhhhc---cccEEEeecccee
Q 003795 412 GVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFV 488 (795)
Q Consensus 412 ~~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el---~~~~~~is~se~~ 488 (795)
.....|+++.|-......+.+..+.+.. -+..|||.|.+||||..+|++|-... +.||+.++|+.+-
T Consensus 239 ~a~y~f~~Iig~S~~m~~~~~~akr~A~----------tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiP 308 (560)
T COG3829 239 KAKYTFDDIIGESPAMLRVLELAKRIAK----------TDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIP 308 (560)
T ss_pred ccccchhhhccCCHHHHHHHHHHHhhcC----------CCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCC
Confidence 3456788888888888877777775532 23348999999999999999997644 6799999999865
Q ss_pred hh-----hhccchhh--------HHhHHHHHHhcCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcc----
Q 003795 489 EI-----YVGVGASR--------VRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGF---- 551 (795)
Q Consensus 489 ~~-----~~g~~~~~--------l~~lf~~ar~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~---- 551 (795)
+. .+|...+. -..+|+.|. .+-+|+|||-.+... ....||..+..-
T Consensus 309 e~LlESELFGye~GAFTGA~~~GK~GlfE~A~---gGTLFLDEIgempl~--------------LQaKLLRVLQEkei~r 371 (560)
T COG3829 309 ETLLESELFGYEKGAFTGASKGGKPGLFELAN---GGTLFLDEIGEMPLP--------------LQAKLLRVLQEKEIER 371 (560)
T ss_pred HHHHHHHHhCcCCccccccccCCCCcceeecc---CCeEEehhhccCCHH--------------HHHHHHHHHhhceEEe
Confidence 54 33433331 122444432 346999999776433 677777776641
Q ss_pred -----cCCCcEEEEeccCCC--CC-----CCccccCCCcccceecCCCCCHHHHHH----HHHHHHcc----CCC----C
Q 003795 552 -----EGRGNVITIASTNRP--DI-----LDPALVRPGRFDRKIFIPKPGLIGRME----ILKVHARK----KPM----A 607 (795)
Q Consensus 552 -----~~~~~VlVIatTN~~--d~-----LdpaLlrpgRFd~~I~~~~Pd~~eR~~----Il~~~l~~----~~~----~ 607 (795)
....+|-||+|||.. +. +-..|.- |+. ++.+..|...+|.+ +..+++.+ .+. .
T Consensus 372 vG~t~~~~vDVRIIAATN~nL~~~i~~G~FReDLYY--RLN-V~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~l 448 (560)
T COG3829 372 VGGTKPIPVDVRIIAATNRNLEKMIAEGTFREDLYY--RLN-VIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGL 448 (560)
T ss_pred cCCCCceeeEEEEEeccCcCHHHHHhcCcchhhhee--eec-eeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcccC
Confidence 123468999999973 11 1222222 232 55666677666654 33333332 111 1
Q ss_pred ChhhHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHH-HHH
Q 003795 608 DDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLL-QAA 655 (795)
Q Consensus 608 ~d~dl~~LA~~t~G~sgadL~~lv~~A~~~A~~~~~~~It~edl~-~Al 655 (795)
.+.-+..|.++----+.++|+|++.++...+ .+...|+.+|+- .++
T Consensus 449 s~~a~~~L~~y~WPGNVRELeNviER~v~~~--~~~~~I~~~~lp~~~l 495 (560)
T COG3829 449 SPDALALLLRYDWPGNVRELENVIERAVNLV--ESDGLIDADDLPAFAL 495 (560)
T ss_pred CHHHHHHHHhCCCCchHHHHHHHHHHHHhcc--CCcceeehhhcchhhh
Confidence 2223444555554457789999999888633 344457777776 443
No 207
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=98.47 E-value=7e-07 Score=104.17 Aligned_cols=210 Identities=20% Similarity=0.249 Sum_probs=123.0
Q ss_pred ccccCccCchHHHHHHHHHHHhccccccccccCcccCCceEEECCCCCchhHHHHHhhhh---ccccEEEeeccceehh-
Q 003795 415 VKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGE---AGVNFFSISASQFVEI- 490 (795)
Q Consensus 415 ~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~e---l~~~~~~is~se~~~~- 490 (795)
..|++..|....+..+.+.+..+... ...|+|+|++||||+++|++|-.. .+.||+.++|+.+.+.
T Consensus 209 ~~f~~iiG~S~~m~~~~~~i~~~A~~----------~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~l 278 (526)
T TIGR02329 209 YRLDDLLGASAPMEQVRALVRLYARS----------DATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAESL 278 (526)
T ss_pred cchhheeeCCHHHHHHHHHHHHHhCC----------CCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChhH
Confidence 55777788888887777777655321 234899999999999999999764 3679999999876432
Q ss_pred ----hhccchhh--------HHhHHHHHHhcCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhccc------
Q 003795 491 ----YVGVGASR--------VRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE------ 552 (795)
Q Consensus 491 ----~~g~~~~~--------l~~lf~~ar~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~------ 552 (795)
.+|...+. -..+|+.+ ..+.+|||||+.+... ....|+..++...
T Consensus 279 leseLFG~~~gaftga~~~~~~Gl~e~A---~gGTLfLdeI~~Lp~~--------------~Q~~Ll~~L~~~~~~r~g~ 341 (526)
T TIGR02329 279 LEAELFGYEEGAFTGARRGGRTGLIEAA---HRGTLFLDEIGEMPLP--------------LQTRLLRVLEEREVVRVGG 341 (526)
T ss_pred HHHHhcCCcccccccccccccccchhhc---CCceEEecChHhCCHH--------------HHHHHHHHHhcCcEEecCC
Confidence 22221110 11234333 3458999999998654 5666666665311
Q ss_pred ---CCCcEEEEeccCCCC--CCCccccCCC---cccceecCCCCCHHHHHH----HHHHHHccC------CCCChhhHHH
Q 003795 553 ---GRGNVITIASTNRPD--ILDPALVRPG---RFDRKIFIPKPGLIGRME----ILKVHARKK------PMADDVDYLA 614 (795)
Q Consensus 553 ---~~~~VlVIatTN~~d--~LdpaLlrpg---RFd~~I~~~~Pd~~eR~~----Il~~~l~~~------~~~~d~dl~~ 614 (795)
...++-+|++||..- .+....+++. |+. .+.+..|...+|.+ ++.+++... .+.++ .+..
T Consensus 342 ~~~~~~dvRiIaat~~~l~~~v~~g~fr~dL~~rL~-~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~-a~~~ 419 (526)
T TIGR02329 342 TEPVPVDVRVVAATHCALTTAVQQGRFRRDLFYRLS-ILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEA-AAQV 419 (526)
T ss_pred CceeeecceEEeccCCCHHHHhhhcchhHHHHHhcC-CcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHH-HHHH
Confidence 112457888886531 1222111110 222 34455566665543 445555432 11111 1222
Q ss_pred -------HHhhCCCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHH
Q 003795 615 -------VASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQ 653 (795)
Q Consensus 615 -------LA~~t~G~sgadL~~lv~~A~~~A~~~~~~~It~edl~~ 653 (795)
|..+.---+.++|.+++.+++..+.......|+.+++..
T Consensus 420 ~~~~~~~L~~y~WPGNvrEL~nvier~~i~~~~~~~~~I~~~~l~~ 465 (526)
T TIGR02329 420 LAGVADPLQRYPWPGNVRELRNLVERLALELSAMPAGALTPDVLRA 465 (526)
T ss_pred hHHHHHHHHhCCCCchHHHHHHHHHHHHHhcccCCCCccCHHHhhh
Confidence 455555556789999999887654322234678777653
No 208
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.46 E-value=2.9e-07 Score=91.42 Aligned_cols=117 Identities=29% Similarity=0.384 Sum_probs=77.3
Q ss_pred ccCCceEEECCCCCchhHHHHHhhhhcc-----------------------ccEEEeeccceehhhhccchhhHHhHHHH
Q 003795 449 RIPGGILLCGPPGVGKTLLAKAVAGEAG-----------------------VNFFSISASQFVEIYVGVGASRVRSLYQE 505 (795)
Q Consensus 449 ~i~~giLL~GPpGtGKTtLakaLA~el~-----------------------~~~~~is~se~~~~~~g~~~~~l~~lf~~ 505 (795)
++|..++|+||+|+||+++|+.+|..+- +++..++...... .-....++.+.+.
T Consensus 17 ~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~---~i~i~~ir~i~~~ 93 (162)
T PF13177_consen 17 RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKK---SIKIDQIREIIEF 93 (162)
T ss_dssp C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSS---SBSHHHHHHHHHH
T ss_pred CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccc---hhhHHHHHHHHHH
Confidence 5677799999999999999999998652 2233332222100 0112344555554
Q ss_pred HHh----cCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcccCCCcEEEEeccCCCCCCCccccCCCcccc
Q 003795 506 AKD----NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDR 581 (795)
Q Consensus 506 ar~----~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVIatTN~~d~LdpaLlrpgRFd~ 581 (795)
+.. ....|++||++|.+... ..+.||..|+ ....++++|.+|+.++.+.|.+++ |.-
T Consensus 94 ~~~~~~~~~~KviiI~~ad~l~~~--------------a~NaLLK~LE--epp~~~~fiL~t~~~~~il~TI~S--Rc~- 154 (162)
T PF13177_consen 94 LSLSPSEGKYKVIIIDEADKLTEE--------------AQNALLKTLE--EPPENTYFILITNNPSKILPTIRS--RCQ- 154 (162)
T ss_dssp CTSS-TTSSSEEEEEETGGGS-HH--------------HHHHHHHHHH--STTTTEEEEEEES-GGGS-HHHHT--TSE-
T ss_pred HHHHHhcCCceEEEeehHhhhhHH--------------HHHHHHHHhc--CCCCCEEEEEEECChHHChHHHHh--hce-
Confidence 432 23569999999998665 8999999999 667789999999999999999999 543
Q ss_pred eecCCC
Q 003795 582 KIFIPK 587 (795)
Q Consensus 582 ~I~~~~ 587 (795)
.+.|++
T Consensus 155 ~i~~~~ 160 (162)
T PF13177_consen 155 VIRFRP 160 (162)
T ss_dssp EEEE--
T ss_pred EEecCC
Confidence 555554
No 209
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=98.46 E-value=6.7e-07 Score=105.14 Aligned_cols=207 Identities=20% Similarity=0.188 Sum_probs=121.8
Q ss_pred cccccCccCchHHHHHHHHHHHhccccccccccCcccCCceEEECCCCCchhHHHHHhhhhc---cccEEEeeccceehh
Q 003795 414 DVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEI 490 (795)
Q Consensus 414 ~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el---~~~~~~is~se~~~~ 490 (795)
...|+.+.|.......+.+.+..+.. ....|+|+|++|||||++|++|.... +.+|+.++|+.+...
T Consensus 192 ~~~~~~liG~s~~~~~~~~~~~~~a~----------~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~~ 261 (534)
T TIGR01817 192 SGKEDGIIGKSPAMRQVVDQARVVAR----------SNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSET 261 (534)
T ss_pred cCccCceEECCHHHHHHHHHHHHHhC----------cCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCHH
Confidence 35667777877777777766665431 12348999999999999999998764 569999999876432
Q ss_pred h-----hccchhhH-------HhHHHHHHhcCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhccc------
Q 003795 491 Y-----VGVGASRV-------RSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE------ 552 (795)
Q Consensus 491 ~-----~g~~~~~l-------~~lf~~ar~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~------ 552 (795)
. +|...+.+ ...++. ...+.+|||||+.+... ....|+..++.-.
T Consensus 262 ~~~~~lfg~~~~~~~~~~~~~~g~~~~---a~~GtL~ldei~~L~~~--------------~Q~~Ll~~l~~~~~~~~~~ 324 (534)
T TIGR01817 262 LLESELFGHEKGAFTGAIAQRKGRFEL---ADGGTLFLDEIGEISPA--------------FQAKLLRVLQEGEFERVGG 324 (534)
T ss_pred HHHHHHcCCCCCccCCCCcCCCCcccc---cCCCeEEEechhhCCHH--------------HHHHHHHHHhcCcEEECCC
Confidence 1 12111100 011222 23568999999998654 5666666665321
Q ss_pred ---CCCcEEEEeccCCCC-------CCCccccCCCccc-ceecCCCCC--HHHHHHHHHHHHccC----CC---CChhhH
Q 003795 553 ---GRGNVITIASTNRPD-------ILDPALVRPGRFD-RKIFIPKPG--LIGRMEILKVHARKK----PM---ADDVDY 612 (795)
Q Consensus 553 ---~~~~VlVIatTN~~d-------~LdpaLlrpgRFd-~~I~~~~Pd--~~eR~~Il~~~l~~~----~~---~~d~dl 612 (795)
...++.+|++|+..- .+.+.|.. |+. ..|.+|+.. .++...|+++++... .. .++.-+
T Consensus 325 ~~~~~~~~riI~~s~~~l~~~~~~~~f~~~L~~--rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~~a~ 402 (534)
T TIGR01817 325 NRTLKVDVRLVAATNRDLEEAVAKGEFRADLYY--RINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSAI 402 (534)
T ss_pred CceEeecEEEEEeCCCCHHHHHHcCCCCHHHHH--HhcCCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 012477888876531 22233332 332 234444332 233344555555422 11 122235
Q ss_pred HHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHH
Q 003795 613 LAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLL 652 (795)
Q Consensus 613 ~~LA~~t~G~sgadL~~lv~~A~~~A~~~~~~~It~edl~ 652 (795)
..|..+.-.-+.++|.++++.|+..+ ....|+.+|+.
T Consensus 403 ~~L~~~~WPGNvrEL~~v~~~a~~~~---~~~~I~~~~l~ 439 (534)
T TIGR01817 403 RVLMSCKWPGNVRELENCLERTATLS---RSGTITRSDFS 439 (534)
T ss_pred HHHHhCCCCChHHHHHHHHHHHHHhC---CCCcccHHHCc
Confidence 55666655567789999998887543 34568888764
No 210
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.46 E-value=1e-07 Score=99.38 Aligned_cols=52 Identities=23% Similarity=0.349 Sum_probs=42.6
Q ss_pred HHHhccccccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeec
Q 003795 433 IVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (795)
Q Consensus 433 lv~~~~~~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (795)
+...|.....+.++++.+..| +.|+||+|||||||++.|||...+..+.+..
T Consensus 9 v~~~f~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~ 62 (248)
T COG1116 9 VSKSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLL 62 (248)
T ss_pred eEEEeCceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEE
Confidence 344555567888999999999 9999999999999999999988776665443
No 211
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.45 E-value=3.2e-07 Score=101.09 Aligned_cols=131 Identities=22% Similarity=0.336 Sum_probs=90.3
Q ss_pred ccCCceEEECCCCCchhHHHHHhhhhcc-------------------------ccEEEeeccceehhhhc-----cchhh
Q 003795 449 RIPGGILLCGPPGVGKTLLAKAVAGEAG-------------------------VNFFSISASQFVEIYVG-----VGASR 498 (795)
Q Consensus 449 ~i~~giLL~GPpGtGKTtLakaLA~el~-------------------------~~~~~is~se~~~~~~g-----~~~~~ 498 (795)
++|.+++|+||+|+|||++|+.+|+.+. ++++.++...-.+ .-| -....
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~-~~g~~~~~I~id~ 97 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEP-ENGRKLLQIKIDA 97 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccc-cccccCCCcCHHH
Confidence 6778899999999999999999998652 2333343311000 000 12334
Q ss_pred HHhHHHHHHh----cCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcccCCCcEEEEeccCCCCCCCcccc
Q 003795 499 VRSLYQEAKD----NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALV 574 (795)
Q Consensus 499 l~~lf~~ar~----~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVIatTN~~d~LdpaLl 574 (795)
++.+.+.+.. ....|++||+++.+... ..+.|+..++... .++.+|.+|+.++.+.+.+.
T Consensus 98 iR~l~~~~~~~p~~~~~kV~iiEp~~~Ld~~--------------a~naLLk~LEep~--~~~~~Ilvth~~~~ll~ti~ 161 (325)
T PRK08699 98 VREIIDNVYLTSVRGGLRVILIHPAESMNLQ--------------AANSLLKVLEEPP--PQVVFLLVSHAADKVLPTIK 161 (325)
T ss_pred HHHHHHHHhhCcccCCceEEEEechhhCCHH--------------HHHHHHHHHHhCc--CCCEEEEEeCChHhChHHHH
Confidence 5666666543 23458899999888554 6778888887543 45667778888889999998
Q ss_pred CCCcccceecCCCCCHHHHHHHHHH
Q 003795 575 RPGRFDRKIFIPKPGLIGRMEILKV 599 (795)
Q Consensus 575 rpgRFd~~I~~~~Pd~~eR~~Il~~ 599 (795)
+ |.. .+.|++|+.++....+..
T Consensus 162 S--Rc~-~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 162 S--RCR-KMVLPAPSHEEALAYLRE 183 (325)
T ss_pred H--Hhh-hhcCCCCCHHHHHHHHHh
Confidence 8 543 788999999887777654
No 212
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.43 E-value=2e-06 Score=101.39 Aligned_cols=186 Identities=15% Similarity=0.092 Sum_probs=123.5
Q ss_pred CceEEECCCCCchhHHHHHhhhhccc--cEEEeeccceehhhhccchhhHHhHHHH---------HHhcCCceeEhHHHH
Q 003795 452 GGILLCGPPGVGKTLLAKAVAGEAGV--NFFSISASQFVEIYVGVGASRVRSLYQE---------AKDNAPSVVFIDELD 520 (795)
Q Consensus 452 ~giLL~GPpGtGKTtLakaLA~el~~--~~~~is~se~~~~~~g~~~~~l~~lf~~---------ar~~~p~Il~IDEID 520 (795)
+|++|.|+.|+|||+++++++..+.. +|+.+..+--....+|... +...+.. ......+|+|+||+.
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~D--l~~~l~~g~~~~~pGlla~Ah~GvL~lDe~n 103 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLD--LAATLRAGRPVAQRGLLAEADGGVLVLAMAE 103 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCch--HHhHhhcCCcCCCCCceeeccCCEEEecCcc
Confidence 57999999999999999999998754 7766655443344444320 1000000 011223699999998
Q ss_pred HHhhhccCCCCCCcchHHHHHHHHHHhhhcc-----------cCCCcEEEEeccCCC---CCCCccccCCCcccceecCC
Q 003795 521 AVGRERGLIKGSGGQERDATLNQLLVCLDGF-----------EGRGNVITIASTNRP---DILDPALVRPGRFDRKIFIP 586 (795)
Q Consensus 521 ~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~-----------~~~~~VlVIatTN~~---d~LdpaLlrpgRFd~~I~~~ 586 (795)
.+.+. ++..|++.|+.- .-..++++|++.|.. ..|+++++. ||+..|.++
T Consensus 104 ~~~~~--------------~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLD--Rf~l~v~v~ 167 (584)
T PRK13406 104 RLEPG--------------TAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALAD--RLAFHLDLD 167 (584)
T ss_pred cCCHH--------------HHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHh--heEEEEEcC
Confidence 77554 889999888742 123568888875432 358899999 999999999
Q ss_pred CCCHHHHH-------HHHH--HHHccCCCCChhhHHHHHhh--CCCC-cHHHHHHHHHHHHHHHHHcCCCccCHHHHHHH
Q 003795 587 KPGLIGRM-------EILK--VHARKKPMADDVDYLAVASM--TDGM-VGAELANIVEVAAINMMRDGRTEITTDDLLQA 654 (795)
Q Consensus 587 ~Pd~~eR~-------~Il~--~~l~~~~~~~d~dl~~LA~~--t~G~-sgadL~~lv~~A~~~A~~~~~~~It~edl~~A 654 (795)
.|+..+.. +|.. ..+.+..+. +..+..++.. ..|. |.+--..+++-|...|...|+..|+.+|+.+|
T Consensus 168 ~~~~~~~~~~~~~~~~I~~AR~rl~~v~v~-~~~l~~i~~~~~~~gv~S~Ra~i~llraARa~AaL~Gr~~V~~~dv~~A 246 (584)
T PRK13406 168 GLALRDAREIPIDADDIAAARARLPAVGPP-PEAIAALCAAAAALGIASLRAPLLALRAARAAAALAGRTAVEEEDLALA 246 (584)
T ss_pred CCChHHhcccCCCHHHHHHHHHHHccCCCC-HHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHHHcCCCCCCHHHHHHH
Confidence 87755421 2332 233333332 2223333221 2354 65666688999999999999999999999999
Q ss_pred HH
Q 003795 655 AQ 656 (795)
Q Consensus 655 l~ 656 (795)
+.
T Consensus 247 a~ 248 (584)
T PRK13406 247 AR 248 (584)
T ss_pred HH
Confidence 88
No 213
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.43 E-value=1.9e-06 Score=100.66 Aligned_cols=193 Identities=20% Similarity=0.202 Sum_probs=114.0
Q ss_pred ccCccCchHHHHHHHHHHHhccccccccccCcccCCceEEECCCCCchhHHHHHhhhhc---cccEEEeeccceehh---
Q 003795 417 FSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEI--- 490 (795)
Q Consensus 417 f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el---~~~~~~is~se~~~~--- 490 (795)
+..+.|....+..+.+.+..+.. .+..|+|+|++||||+++|++|.... +.+|+.++|+.+.+.
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~a~----------~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~e 255 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVVAA----------SDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLAE 255 (509)
T ss_pred CCceeecCHHHHHHHHHHHHHhC----------CCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHHH
Confidence 34455666666666666554431 12348999999999999999998754 579999999876432
Q ss_pred --hhccchhhH-------HhHHHHHHhcCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhccc---------
Q 003795 491 --YVGVGASRV-------RSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE--------- 552 (795)
Q Consensus 491 --~~g~~~~~l-------~~lf~~ar~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~--------- 552 (795)
.+|...+.. ...|+.+ ..+.+|||||+.+... ....|+..++...
T Consensus 256 ~~lfG~~~g~~~ga~~~~~g~~~~a---~gGtL~ldeI~~L~~~--------------~Q~~Ll~~l~~~~~~~~g~~~~ 318 (509)
T PRK05022 256 SELFGHVKGAFTGAISNRSGKFELA---DGGTLFLDEIGELPLA--------------LQAKLLRVLQYGEIQRVGSDRS 318 (509)
T ss_pred HHhcCccccccCCCcccCCcchhhc---CCCEEEecChhhCCHH--------------HHHHHHHHHhcCCEeeCCCCcc
Confidence 222211100 1123332 3568999999998654 5666666665321
Q ss_pred CCCcEEEEeccCCCC-------CCCccccCCCcccceecCCCCCHHHHHH----HHHHHHccC----C----CCChhhHH
Q 003795 553 GRGNVITIASTNRPD-------ILDPALVRPGRFDRKIFIPKPGLIGRME----ILKVHARKK----P----MADDVDYL 613 (795)
Q Consensus 553 ~~~~VlVIatTN~~d-------~LdpaLlrpgRFd~~I~~~~Pd~~eR~~----Il~~~l~~~----~----~~~d~dl~ 613 (795)
...++-+|++||..- .+.+.|.. |+. .+.|..|...+|.+ ++++++... . .....-+.
T Consensus 319 ~~~~~RiI~~t~~~l~~~~~~~~f~~dL~~--rl~-~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~ 395 (509)
T PRK05022 319 LRVDVRVIAATNRDLREEVRAGRFRADLYH--RLS-VFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQA 395 (509)
T ss_pred eecceEEEEecCCCHHHHHHcCCccHHHHh--ccc-ccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHH
Confidence 123678888887631 12333332 332 34455666666543 334443321 1 11222355
Q ss_pred HHHhhCCCCcHHHHHHHHHHHHHHHH
Q 003795 614 AVASMTDGMVGAELANIVEVAAINMM 639 (795)
Q Consensus 614 ~LA~~t~G~sgadL~~lv~~A~~~A~ 639 (795)
.|..+.---+.++|.++++.|+..+.
T Consensus 396 ~L~~y~WPGNvrEL~~~i~ra~~~~~ 421 (509)
T PRK05022 396 ALLAYDWPGNVRELEHVISRAALLAR 421 (509)
T ss_pred HHHhCCCCCcHHHHHHHHHHHHHhcC
Confidence 56666655678899999999887653
No 214
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=98.42 E-value=7.3e-07 Score=105.34 Aligned_cols=135 Identities=24% Similarity=0.296 Sum_probs=78.5
Q ss_pred HHHHHHHHHhccccccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeecccee-hhhhccchhhH---H
Q 003795 427 RLELEEIVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFV-EIYVGVGASRV---R 500 (795)
Q Consensus 427 ~~~l~~lv~~~~~~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~se~~-~~~~g~~~~~l---~ 500 (795)
.+.++++...|.+...+.++++.+..| +.|+||||+|||||+++|+|...+..+.+..+.-. -.|+.+....+ .
T Consensus 324 ~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~q~~~~~~~~~ 403 (556)
T PRK11819 324 VIEAENLSKSFGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKLAYVDQSRDALDPNK 403 (556)
T ss_pred EEEEEeEEEEECCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEeCchhhcCCCC
Confidence 455566666666666888999999988 89999999999999999999887777766553211 11222221000 1
Q ss_pred hHHHHHHhcCC--ce-eEhHHHHHHhhhccC---------CCCCCcchHHHHHHHHHHhhhcccCCCcEEEE-eccCCCC
Q 003795 501 SLYQEAKDNAP--SV-VFIDELDAVGRERGL---------IKGSGGQERDATLNQLLVCLDGFEGRGNVITI-ASTNRPD 567 (795)
Q Consensus 501 ~lf~~ar~~~p--~I-l~IDEID~l~~~r~~---------~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVI-atTN~~d 567 (795)
.+++....... .. ---.++..+....+. ..-|||++.+..+...+ ....+++++ .+||..|
T Consensus 404 tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al------~~~p~lllLDEPt~~LD 477 (556)
T PRK11819 404 TVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTL------KQGGNVLLLDEPTNDLD 477 (556)
T ss_pred CHHHHHHhhcccccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHH------hcCCCEEEEcCCCCCCC
Confidence 12222211000 00 000111122211111 12289999988888777 456677777 7887654
No 215
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.42 E-value=1.9e-06 Score=95.15 Aligned_cols=70 Identities=20% Similarity=0.290 Sum_probs=48.5
Q ss_pred cc-CccCchHHHHHHHHHHHhccccccccccCcccC-CceEEECCCCCchhHHHHHhhhhccc-------cEEEeec---
Q 003795 417 FS-DVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIP-GGILLCGPPGVGKTLLAKAVAGEAGV-------NFFSISA--- 484 (795)
Q Consensus 417 f~-~~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~-~giLL~GPpGtGKTtLakaLA~el~~-------~~~~is~--- 484 (795)
|+ ++.|+++.+..+-+ ++.... .|...+ +.++|+||||+|||||+++|++.++. +++.+.+
T Consensus 49 F~~~~~G~~~~i~~lv~---~l~~~a----~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~~~ 121 (361)
T smart00763 49 FDHDFFGMEEAIERFVN---YFKSAA----QGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWNGE 121 (361)
T ss_pred cchhccCcHHHHHHHHH---HHHHHH----hcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEecCC
Confidence 55 68898888655444 333221 122222 44899999999999999999999876 8888888
Q ss_pred -cceehhhhc
Q 003795 485 -SQFVEIYVG 493 (795)
Q Consensus 485 -se~~~~~~g 493 (795)
+.+.+..++
T Consensus 122 ~sp~~e~Pl~ 131 (361)
T smart00763 122 ESPMHEDPLH 131 (361)
T ss_pred CCCCccCCcc
Confidence 665555333
No 216
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=98.42 E-value=1.4e-06 Score=96.14 Aligned_cols=191 Identities=20% Similarity=0.185 Sum_probs=109.9
Q ss_pred ccCccCchHHHHHHHHHHHhccccccccccCcccCCceEEECCCCCchhHHHHHhhhhc---cccEEEeeccceehh---
Q 003795 417 FSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEI--- 490 (795)
Q Consensus 417 f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el---~~~~~~is~se~~~~--- 490 (795)
+++..|.......+.+.+..+. ..+..|+|+|++||||+++|++|-... +.+|+.++|+.+...
T Consensus 5 ~~~liG~S~~~~~~~~~i~~~a----------~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~~ 74 (326)
T PRK11608 5 KDNLLGEANSFLEVLEQVSRLA----------PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLD 74 (326)
T ss_pred cCccEECCHHHHHHHHHHHHHh----------CCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHHH
Confidence 3345566666666665555442 112348999999999999999997543 468999999876422
Q ss_pred --hhccchhh-------HHhHHHHHHhcCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhccc---------
Q 003795 491 --YVGVGASR-------VRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE--------- 552 (795)
Q Consensus 491 --~~g~~~~~-------l~~lf~~ar~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~--------- 552 (795)
.+|..... ....++. ...+.+|||||+.+... ....|+..++.-.
T Consensus 75 ~~lfg~~~~~~~g~~~~~~g~l~~---a~gGtL~l~~i~~L~~~--------------~Q~~L~~~l~~~~~~~~g~~~~ 137 (326)
T PRK11608 75 SELFGHEAGAFTGAQKRHPGRFER---ADGGTLFLDELATAPML--------------VQEKLLRVIEYGELERVGGSQP 137 (326)
T ss_pred HHHccccccccCCcccccCCchhc---cCCCeEEeCChhhCCHH--------------HHHHHHHHHhcCcEEeCCCCce
Confidence 22221110 0112322 23468999999998654 5666666665311
Q ss_pred CCCcEEEEeccCCC-------CCCCccccCCCcccceecCCCCCHHHHH----HHHHHHHcc----CCC-----CChhhH
Q 003795 553 GRGNVITIASTNRP-------DILDPALVRPGRFDRKIFIPKPGLIGRM----EILKVHARK----KPM-----ADDVDY 612 (795)
Q Consensus 553 ~~~~VlVIatTN~~-------d~LdpaLlrpgRFd~~I~~~~Pd~~eR~----~Il~~~l~~----~~~-----~~d~dl 612 (795)
...++.||++|+.. ..+.+.|.. ||. .+.+..|...+|. .++.+++.. ... .+..-+
T Consensus 138 ~~~~~RiI~~s~~~l~~l~~~g~f~~dL~~--~l~-~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~al 214 (326)
T PRK11608 138 LQVNVRLVCATNADLPAMVAEGKFRADLLD--RLA-FDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERAR 214 (326)
T ss_pred eeccEEEEEeCchhHHHHHHcCCchHHHHH--hcC-CCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHHH
Confidence 01357888887653 234455555 553 2344445555553 344444422 111 122234
Q ss_pred HHHHhhCCCCcHHHHHHHHHHHHHH
Q 003795 613 LAVASMTDGMVGAELANIVEVAAIN 637 (795)
Q Consensus 613 ~~LA~~t~G~sgadL~~lv~~A~~~ 637 (795)
..|..+.---+.++|.++++.|+..
T Consensus 215 ~~L~~y~WPGNvrEL~~vl~~a~~~ 239 (326)
T PRK11608 215 ETLLNYRWPGNIRELKNVVERSVYR 239 (326)
T ss_pred HHHHhCCCCcHHHHHHHHHHHHHHh
Confidence 5555555555678888888887754
No 217
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=98.41 E-value=7.7e-07 Score=97.61 Aligned_cols=77 Identities=29% Similarity=0.342 Sum_probs=45.6
Q ss_pred CceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcccCCCcEEEEeccCC------------CCCCCccccCCCc
Q 003795 511 PSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNR------------PDILDPALVRPGR 578 (795)
Q Consensus 511 p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVIatTN~------------~d~LdpaLlrpgR 578 (795)
|+|+||||++.+--. .+..|-..++. ..+. +||.+||+ |.-+|..|+. |
T Consensus 279 pGVLFIDEvHmLDiE--------------cFsfLnralEs--~~sP-iiIlATNRg~~~irGt~~~sphGiP~DlLD--R 339 (398)
T PF06068_consen 279 PGVLFIDEVHMLDIE--------------CFSFLNRALES--ELSP-IIILATNRGITKIRGTDIISPHGIPLDLLD--R 339 (398)
T ss_dssp E-EEEEESGGGSBHH--------------HHHHHHHHHTS--TT---EEEEEES-SEEE-BTTS-EEETT--HHHHT--T
T ss_pred cceEEecchhhccHH--------------HHHHHHHHhcC--CCCc-EEEEecCceeeeccCccCcCCCCCCcchHh--h
Confidence 778999998877443 44444445552 2233 56667774 4457778887 6
Q ss_pred ccceecCCCCCHHHHHHHHHHHHccCCCC
Q 003795 579 FDRKIFIPKPGLIGRMEILKVHARKKPMA 607 (795)
Q Consensus 579 Fd~~I~~~~Pd~~eR~~Il~~~l~~~~~~ 607 (795)
+- +|...+++.++..+|++.++....+.
T Consensus 340 ll-II~t~py~~~ei~~Il~iR~~~E~v~ 367 (398)
T PF06068_consen 340 LL-IIRTKPYSEEEIKQILKIRAKEEDVE 367 (398)
T ss_dssp EE-EEEE----HHHHHHHHHHHHHHCT--
T ss_pred cE-EEECCCCCHHHHHHHHHhhhhhhcCc
Confidence 54 77888999999999999999876544
No 218
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=98.40 E-value=8.4e-07 Score=104.74 Aligned_cols=58 Identities=24% Similarity=0.398 Sum_probs=47.1
Q ss_pred HHHHHHHHHhccccccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeec
Q 003795 427 RLELEEIVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (795)
Q Consensus 427 ~~~l~~lv~~~~~~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (795)
.+.++++...|.+..++.++++.+..| +.|+||||+|||||+++|+|...+..+.+..
T Consensus 322 ~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~ 381 (552)
T TIGR03719 322 VIEAENLSKGFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKI 381 (552)
T ss_pred EEEEeeEEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEE
Confidence 455566666666666888899999988 8899999999999999999988776666654
No 219
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.31 E-value=5.2e-06 Score=99.77 Aligned_cols=207 Identities=22% Similarity=0.262 Sum_probs=121.3
Q ss_pred ccccCccCchHHHHHHHHHHHhccccccccccCcccCCceEEECCCCCchhHHHHHhhhhc---cccEEEeeccceehh-
Q 003795 415 VKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEI- 490 (795)
Q Consensus 415 ~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el---~~~~~~is~se~~~~- 490 (795)
..|++..|.......+.+.+..+.. -...|+|+|++||||+++|++|.... +.+|+.++|+.+...
T Consensus 322 ~~~~~l~g~s~~~~~~~~~~~~~a~----------~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~~ 391 (638)
T PRK11388 322 HTFDHMPQDSPQMRRLIHFGRQAAK----------SSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDEA 391 (638)
T ss_pred ccccceEECCHHHHHHHHHHHHHhC----------cCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChHH
Confidence 4577777777666666555554321 12338999999999999999998754 469999999876432
Q ss_pred ----hhccch----hhHHhHHHHHHhcCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhccc----C-----
Q 003795 491 ----YVGVGA----SRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE----G----- 553 (795)
Q Consensus 491 ----~~g~~~----~~l~~lf~~ar~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~----~----- 553 (795)
.+|... ......|+. ...+.+|||||+.+... ....|+..++.-. +
T Consensus 392 ~~~elfg~~~~~~~~~~~g~~~~---a~~GtL~ldei~~l~~~--------------~Q~~Ll~~l~~~~~~~~~~~~~~ 454 (638)
T PRK11388 392 LAEEFLGSDRTDSENGRLSKFEL---AHGGTLFLEKVEYLSPE--------------LQSALLQVLKTGVITRLDSRRLI 454 (638)
T ss_pred HHHHhcCCCCcCccCCCCCceeE---CCCCEEEEcChhhCCHH--------------HHHHHHHHHhcCcEEeCCCCceE
Confidence 233210 000112322 23568999999998654 5666666665321 0
Q ss_pred CCcEEEEeccCCCCCCCccccCCCcccc-------eecCCCCCHHHHH----HHHHHHHccC----C---CCChhhHHHH
Q 003795 554 RGNVITIASTNRPDILDPALVRPGRFDR-------KIFIPKPGLIGRM----EILKVHARKK----P---MADDVDYLAV 615 (795)
Q Consensus 554 ~~~VlVIatTN~~d~LdpaLlrpgRFd~-------~I~~~~Pd~~eR~----~Il~~~l~~~----~---~~~d~dl~~L 615 (795)
..++-+|+|||..- ..+...|+|.. .+.+..|...+|. .+++.++... . ...+..+..|
T Consensus 455 ~~~~riI~~t~~~l---~~~~~~~~f~~dL~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~~L 531 (638)
T PRK11388 455 PVDVRVIATTTADL---AMLVEQNRFSRQLYYALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALARL 531 (638)
T ss_pred EeeEEEEEeccCCH---HHHHhcCCChHHHhhhhceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHHHH
Confidence 12577888887531 11222233311 4455566666664 2444444321 1 1122335556
Q ss_pred HhhCCCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHH
Q 003795 616 ASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQA 654 (795)
Q Consensus 616 A~~t~G~sgadL~~lv~~A~~~A~~~~~~~It~edl~~A 654 (795)
..+.-.-+.++|.++++.|+..+ ....|+.+|+-..
T Consensus 532 ~~y~WPGNvreL~~~l~~~~~~~---~~~~i~~~~lp~~ 567 (638)
T PRK11388 532 VSYRWPGNDFELRSVIENLALSS---DNGRIRLSDLPEH 567 (638)
T ss_pred HcCCCCChHHHHHHHHHHHHHhC---CCCeecHHHCchh
Confidence 66665567789999998877543 3346777776544
No 220
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.31 E-value=4.7e-06 Score=100.92 Aligned_cols=195 Identities=22% Similarity=0.259 Sum_probs=114.0
Q ss_pred ccccCccCchHHHHHHHHHHHhccccccccccCcccCCceEEECCCCCchhHHHHHhhhhc---cccEEEeeccceehh-
Q 003795 415 VKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEI- 490 (795)
Q Consensus 415 ~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el---~~~~~~is~se~~~~- 490 (795)
..|.+..|....+..+.+-+..+.. -...|+|+|++|||||++|++|.... +.+++.++|..+...
T Consensus 373 ~~~~~liG~S~~~~~~~~~~~~~a~----------~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~~ 442 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQVEMVAQ----------SDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGL 442 (686)
T ss_pred ccccceeecCHHHHHHHHHHHHHhC----------CCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChhH
Confidence 4566777777777666666554421 12348999999999999999997643 569999999875432
Q ss_pred ----hhccchh-------hHHhHHHHHHhcCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhccc-------
Q 003795 491 ----YVGVGAS-------RVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE------- 552 (795)
Q Consensus 491 ----~~g~~~~-------~l~~lf~~ar~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~------- 552 (795)
.+|.... .....++. ...+.+|||||+.+... ....|+..++...
T Consensus 443 ~~~~lfg~~~~~~~g~~~~~~g~le~---a~~GtL~Ldei~~L~~~--------------~Q~~L~~~l~~~~~~~~g~~ 505 (686)
T PRK15429 443 LESDLFGHERGAFTGASAQRIGRFEL---ADKSSLFLDEVGDMPLE--------------LQPKLLRVLQEQEFERLGSN 505 (686)
T ss_pred hhhhhcCcccccccccccchhhHHHh---cCCCeEEEechhhCCHH--------------HHHHHHHHHHhCCEEeCCCC
Confidence 2221110 01112332 23568999999998654 5666666664311
Q ss_pred --CCCcEEEEeccCCCC--CCCccccCCC---cccceecCCCCCHHHHHH----HHHHHHccC----C--C--CChhhHH
Q 003795 553 --GRGNVITIASTNRPD--ILDPALVRPG---RFDRKIFIPKPGLIGRME----ILKVHARKK----P--M--ADDVDYL 613 (795)
Q Consensus 553 --~~~~VlVIatTN~~d--~LdpaLlrpg---RFd~~I~~~~Pd~~eR~~----Il~~~l~~~----~--~--~~d~dl~ 613 (795)
...++-+|++|+..- .+....+++. |+. .+.+..|...+|.+ ++++++.+. . . .+..-+.
T Consensus 506 ~~~~~~~RiI~~t~~~l~~~~~~~~f~~~L~~~l~-~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~al~ 584 (686)
T PRK15429 506 KIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLN-VFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETLR 584 (686)
T ss_pred CcccceEEEEEeCCCCHHHHHHcCcccHHHHhccC-eeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHH
Confidence 124678888887631 1111111110 222 34556666666654 444444321 1 1 1223355
Q ss_pred HHHhhCCCCcHHHHHHHHHHHHHH
Q 003795 614 AVASMTDGMVGAELANIVEVAAIN 637 (795)
Q Consensus 614 ~LA~~t~G~sgadL~~lv~~A~~~ 637 (795)
.|..+.--.+.++|.++++.|+..
T Consensus 585 ~L~~y~WPGNvrEL~~~i~~a~~~ 608 (686)
T PRK15429 585 TLSNMEWPGNVRELENVIERAVLL 608 (686)
T ss_pred HHHhCCCCCcHHHHHHHHHHHHHh
Confidence 566665556778999999888754
No 221
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.29 E-value=5.5e-06 Score=97.06 Aligned_cols=206 Identities=17% Similarity=0.212 Sum_probs=116.2
Q ss_pred ccccccCccCchHHHHHHHHHHHhccccccccccCcccCCceEEECCCCCchhHHHHHhhhhc---cccEEEeeccceeh
Q 003795 413 VDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVE 489 (795)
Q Consensus 413 ~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el---~~~~~~is~se~~~ 489 (795)
....|++..|.......+.+.+..+.. ....|+|+|++||||+++|+++-... ..+|+.++|+.+..
T Consensus 199 ~~~~f~~~ig~s~~~~~~~~~~~~~A~----------~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~ 268 (520)
T PRK10820 199 DDSAFSQIVAVSPKMRQVVEQARKLAM----------LDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPD 268 (520)
T ss_pred ccccccceeECCHHHHHHHHHHHHHhC----------CCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCH
Confidence 345677777777666555554443321 12338999999999999999985433 46899999987643
Q ss_pred h-----hhccchh-------hHHhHHHHHHhcCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhccc-----
Q 003795 490 I-----YVGVGAS-------RVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE----- 552 (795)
Q Consensus 490 ~-----~~g~~~~-------~l~~lf~~ar~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~----- 552 (795)
. .+|...+ .-..+|+.+ ..+.+|||||+.+... ....|+..+..-.
T Consensus 269 ~~~e~elFG~~~~~~~~~~~~~~g~~e~a---~~GtL~LdeI~~L~~~--------------~Q~~Ll~~l~~~~~~~~g 331 (520)
T PRK10820 269 DVVESELFGHAPGAYPNALEGKKGFFEQA---NGGSVLLDEIGEMSPR--------------MQAKLLRFLNDGTFRRVG 331 (520)
T ss_pred HHHHHHhcCCCCCCcCCcccCCCChhhhc---CCCEEEEeChhhCCHH--------------HHHHHHHHHhcCCcccCC
Confidence 2 1222211 011234433 3458999999998654 4556665554311
Q ss_pred ----CCCcEEEEeccCCCC-------CCCccccCCCcccceecCCCCCHHHHHH----HHHHHHc----cCCC----CCh
Q 003795 553 ----GRGNVITIASTNRPD-------ILDPALVRPGRFDRKIFIPKPGLIGRME----ILKVHAR----KKPM----ADD 609 (795)
Q Consensus 553 ----~~~~VlVIatTN~~d-------~LdpaLlrpgRFd~~I~~~~Pd~~eR~~----Il~~~l~----~~~~----~~d 609 (795)
...++-||++|+..- .+.+.|.. |+. .+.+..|...+|.+ ++.+++. +... .+.
T Consensus 332 ~~~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~--rL~-~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~ 408 (520)
T PRK10820 332 EDHEVHVDVRVICATQKNLVELVQKGEFREDLYY--RLN-VLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAA 408 (520)
T ss_pred CCcceeeeeEEEEecCCCHHHHHHcCCccHHHHh--hcC-eeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCH
Confidence 123577888776531 23334443 443 35555566655542 3333332 2211 122
Q ss_pred hhHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCccCHHHH
Q 003795 610 VDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDL 651 (795)
Q Consensus 610 ~dl~~LA~~t~G~sgadL~~lv~~A~~~A~~~~~~~It~edl 651 (795)
.-+..|..+.-.-+.++|.+++..|+..+ ....|+.+|+
T Consensus 409 ~a~~~L~~y~WPGNvreL~nvl~~a~~~~---~~~~i~~~~~ 447 (520)
T PRK10820 409 DLNTVLTRYGWPGNVRQLKNAIYRALTQL---EGYELRPQDI 447 (520)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHHhC---CCCcccHHHc
Confidence 22444444444446678888888776543 3345777765
No 222
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.28 E-value=7.1e-06 Score=95.50 Aligned_cols=189 Identities=19% Similarity=0.226 Sum_probs=115.5
Q ss_pred eEEECCCCCchhHHHHHhhhhc----------cccEEEeeccceehh---h-------hccchh------hHHhHHHH-H
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEA----------GVNFFSISASQFVEI---Y-------VGVGAS------RVRSLYQE-A 506 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el----------~~~~~~is~se~~~~---~-------~g~~~~------~l~~lf~~-a 506 (795)
+.+.|-||||||.+++.+..++ ..+++.|++-.+... | .|.... .+..-|.. .
T Consensus 425 mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k 504 (767)
T KOG1514|consen 425 MYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTVPK 504 (767)
T ss_pred EEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccCC
Confidence 8899999999999999988755 345677776655543 2 111111 01111110 0
Q ss_pred HhcCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcccCCCcEEEEeccCCCCCCCccccC---CCccc-ce
Q 003795 507 KDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVR---PGRFD-RK 582 (795)
Q Consensus 507 r~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVIatTN~~d~LdpaLlr---pgRFd-~~ 582 (795)
-...++|++|||+|.+.... ..++..++...- ..++.++||+-+|..+. +..++. ..|++ ..
T Consensus 505 ~~~~~~VvLiDElD~Lvtr~-----------QdVlYn~fdWpt--~~~sKLvvi~IaNTmdl-PEr~l~nrvsSRlg~tR 570 (767)
T KOG1514|consen 505 PKRSTTVVLIDELDILVTRS-----------QDVLYNIFDWPT--LKNSKLVVIAIANTMDL-PERLLMNRVSSRLGLTR 570 (767)
T ss_pred CCCCCEEEEeccHHHHhccc-----------HHHHHHHhcCCc--CCCCceEEEEecccccC-HHHHhccchhhhcccee
Confidence 13457899999999997642 113443432222 35677888888888764 333221 12443 47
Q ss_pred ecCCCCCHHHHHHHHHHHHccCCCCChhhHHHHHhhCCCCcH--HHHHHHHHHHHHHHHHcCC-------CccCHHHHHH
Q 003795 583 IFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVG--AELANIVEVAAINMMRDGR-------TEITTDDLLQ 653 (795)
Q Consensus 583 I~~~~Pd~~eR~~Il~~~l~~~~~~~d~dl~~LA~~t~G~sg--adL~~lv~~A~~~A~~~~~-------~~It~edl~~ 653 (795)
|.|.+++..+..+|+...+.....-..--...+|+.-...|| +....+|++|...|..+.. ..|+.-|+.+
T Consensus 571 i~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~RA~Eia~~~~~~~k~~~~q~v~~~~v~~ 650 (767)
T KOG1514|consen 571 ICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICRRAAEIAEERNVKGKLAVSQLVGILHVME 650 (767)
T ss_pred eecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHHHHHHHhhhhcccccccccceeehHHHHH
Confidence 899999999999999998876632222122233333222222 2333778888887766544 5688888888
Q ss_pred HHH
Q 003795 654 AAQ 656 (795)
Q Consensus 654 Al~ 656 (795)
|+.
T Consensus 651 Ai~ 653 (767)
T KOG1514|consen 651 AIN 653 (767)
T ss_pred HHH
Confidence 876
No 223
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=98.28 E-value=3.4e-06 Score=95.98 Aligned_cols=204 Identities=23% Similarity=0.249 Sum_probs=123.7
Q ss_pred cccCccCchHHHHHHHHHHHhccccccccccCcccCCceEEECCCCCchhHHHHHhhhhc---cccEEEeeccceehh--
Q 003795 416 KFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEI-- 490 (795)
Q Consensus 416 ~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el---~~~~~~is~se~~~~-- 490 (795)
.+....|-......+.+.+..+... ...|+|+|++||||-.+|++|-... +.||+.++|+.+-..
T Consensus 139 ~~~~liG~S~am~~l~~~i~kvA~s----------~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l~ 208 (464)
T COG2204 139 LGGELVGESPAMQQLRRLIAKVAPS----------DASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENLL 208 (464)
T ss_pred ccCCceecCHHHHHHHHHHHHHhCC----------CCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHHH
Confidence 3445667778888888888766432 2238999999999999999997754 569999999986544
Q ss_pred ---hhccchhhH-------HhHHHHHHhcCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcc-----c---
Q 003795 491 ---YVGVGASRV-------RSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGF-----E--- 552 (795)
Q Consensus 491 ---~~g~~~~~l-------~~lf~~ar~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~-----~--- 552 (795)
.+|...+.+ ...|+.| ..+.+|||||..+... +...||..+..- .
T Consensus 209 ESELFGhekGAFTGA~~~r~G~fE~A---~GGTLfLDEI~~mpl~--------------~Q~kLLRvLqe~~~~rvG~~~ 271 (464)
T COG2204 209 ESELFGHEKGAFTGAITRRIGRFEQA---NGGTLFLDEIGEMPLE--------------LQVKLLRVLQEREFERVGGNK 271 (464)
T ss_pred HHHhhcccccCcCCcccccCcceeEc---CCceEEeeccccCCHH--------------HHHHHHHHHHcCeeEecCCCc
Confidence 344333211 1233333 3458999999877543 677777766531 1
Q ss_pred -CCCcEEEEeccCCCC-------CCCccccCCCcccceecCCCCCHHHHHH----HHHHHHcc----CC-CCChhhHHHH
Q 003795 553 -GRGNVITIASTNRPD-------ILDPALVRPGRFDRKIFIPKPGLIGRME----ILKVHARK----KP-MADDVDYLAV 615 (795)
Q Consensus 553 -~~~~VlVIatTN~~d-------~LdpaLlrpgRFd~~I~~~~Pd~~eR~~----Il~~~l~~----~~-~~~d~dl~~L 615 (795)
-+-+|-||++||..= .+-+.|.- |+. ++.+..|...+|.+ ++++++++ .. -...++-..+
T Consensus 272 ~i~vdvRiIaaT~~dL~~~v~~G~FReDLyy--RLn-V~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a~ 348 (464)
T COG2204 272 PIKVDVRIIAATNRDLEEEVAAGRFREDLYY--RLN-VVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEAL 348 (464)
T ss_pred ccceeeEEEeecCcCHHHHHHcCCcHHHHHh--hhc-cceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHHHH
Confidence 124688999998631 12222322 333 66777788777765 44444432 21 1223333334
Q ss_pred H---hhCCCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHH
Q 003795 616 A---SMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLL 652 (795)
Q Consensus 616 A---~~t~G~sgadL~~lv~~A~~~A~~~~~~~It~edl~ 652 (795)
+ .+.---+.++|.|++.+++..+ ....|+.+++-
T Consensus 349 ~~L~~y~WPGNVREL~N~ver~~il~---~~~~i~~~~l~ 385 (464)
T COG2204 349 AALLAYDWPGNVRELENVVERAVILS---EGPEIEVEDLP 385 (464)
T ss_pred HHHHhCCCChHHHHHHHHHHHHHhcC---Cccccchhhcc
Confidence 3 3333335577777777776543 34446665554
No 224
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=1.8e-06 Score=97.22 Aligned_cols=211 Identities=26% Similarity=0.287 Sum_probs=120.7
Q ss_pred ccccCccCchHHHHHHHHHHHhccccccccccCcccCCceEEECCCCCchhHHHHHhhhhccccE----EEee-----cc
Q 003795 415 VKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNF----FSIS-----AS 485 (795)
Q Consensus 415 ~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el~~~~----~~is-----~s 485 (795)
..|.|+.|....+..+.-+.... .+++++||||||||+|++-+.+.+.+-. ++++ .+
T Consensus 176 ~D~~DV~GQ~~AKrAleiAAAGg--------------HnLl~~GpPGtGKTmla~Rl~~lLPpls~~E~lE~s~I~s~~g 241 (490)
T COG0606 176 PDFKDVKGQEQAKRALEIAAAGG--------------HNLLLVGPPGTGKTMLASRLPGLLPPLSIPEALEVSAIHSLAG 241 (490)
T ss_pred cchhhhcCcHHHHHHHHHHHhcC--------------CcEEEecCCCCchHHhhhhhcccCCCCChHHHHHHHHHhhhcc
Confidence 46888899888886666544322 2489999999999999999998764311 1111 00
Q ss_pred ceehh--------h--hccchhhHHhHHH--------HHHhcCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHh
Q 003795 486 QFVEI--------Y--VGVGASRVRSLYQ--------EAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVC 547 (795)
Q Consensus 486 e~~~~--------~--~g~~~~~l~~lf~--------~ar~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ 547 (795)
.+.+. | .+.+.. ...+.- .+.....+|+|+||+-.+- +.+++.|.+=
T Consensus 242 ~~~~~~~~~~~rPFr~PHHsaS-~~aLvGGG~~p~PGeIsLAH~GVLFLDElpef~--------------~~iLe~LR~P 306 (490)
T COG0606 242 DLHEGCPLKIHRPFRAPHHSAS-LAALVGGGGVPRPGEISLAHNGVLFLDELPEFK--------------RSILEALREP 306 (490)
T ss_pred cccccCccceeCCccCCCccch-HHHHhCCCCCCCCCceeeecCCEEEeeccchhh--------------HHHHHHHhCc
Confidence 00000 0 000000 000000 0111223599999985443 3488888877
Q ss_pred hhccc-----------CCCcEEEEeccCCCC-----------------------CCCccccCCCcccceecCCCCCHHHH
Q 003795 548 LDGFE-----------GRGNVITIASTNRPD-----------------------ILDPALVRPGRFDRKIFIPKPGLIGR 593 (795)
Q Consensus 548 ld~~~-----------~~~~VlVIatTN~~d-----------------------~LdpaLlrpgRFd~~I~~~~Pd~~eR 593 (795)
|++-. -..++.+|+++|.-- .|...|++ |||..+.++.++..++
T Consensus 307 LE~g~i~IsRa~~~v~ypa~Fqlv~AmNpcpcG~~~~~~~~C~c~~~~~~~Y~~klSgp~lD--RiDl~vev~~~~~~e~ 384 (490)
T COG0606 307 LENGKIIISRAGSKVTYPARFQLVAAMNPCPCGNLGAPLRRCPCSPRQIKRYLNKLSGPFLD--RIDLMVEVPRLSAGEL 384 (490)
T ss_pred cccCcEEEEEcCCeeEEeeeeEEhhhcCCCCccCCCCCCCCcCCCHHHHHHHHHHhhHHHHh--hhhheecccCCCHHHh
Confidence 76421 124577888888631 24456777 9999999888763332
Q ss_pred H--------------HHHHH----HHccCCC--C----------------ChhhHHHHHhhCCCCcHHHHHHHHHHHHHH
Q 003795 594 M--------------EILKV----HARKKPM--A----------------DDVDYLAVASMTDGMVGAELANIVEVAAIN 637 (795)
Q Consensus 594 ~--------------~Il~~----~l~~~~~--~----------------~d~dl~~LA~~t~G~sgadL~~lv~~A~~~ 637 (795)
. .+.+. ..+.... . .+.++...+-..-++|.+....+++-|...
T Consensus 385 ~~~~~~~ess~~v~~rVa~AR~~Q~~R~~~~~~Na~l~~~~l~k~~~L~~~~~~~L~~al~~~~lS~R~~~rILKvarTi 464 (490)
T COG0606 385 IRQVPTGESSAGVRERVAKAREAQIARAGRIGINAELSEEALRKFCALQREDADLLKAALERLGLSARAYHRILKVARTI 464 (490)
T ss_pred hcCCCCCCCcHHHHHHHHHHHHHHHHHhhccCcchhcCHHHHHHhcccCHhHHHHHHHHHHhcchhHHHHHHHHHHHhhh
Confidence 1 12211 0111111 1 112233334445567777777788777777
Q ss_pred HHHcCCCccCHHHHHHHHH
Q 003795 638 MMRDGRTEITTDDLLQAAQ 656 (795)
Q Consensus 638 A~~~~~~~It~edl~~Al~ 656 (795)
|-..+...|...|+.+|+.
T Consensus 465 ADL~g~~~i~~~hl~eAi~ 483 (490)
T COG0606 465 ADLEGSEQIERSHLAEAIS 483 (490)
T ss_pred hcccCcchhhHHHHHHHHh
Confidence 7777777888888888865
No 225
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=98.26 E-value=2.7e-05 Score=87.95 Aligned_cols=194 Identities=23% Similarity=0.283 Sum_probs=119.0
Q ss_pred cccccCccCchHHHHHHHHHHHhccccccccccCcccCCceEEECCCCCchhHHHHHhhhhc---cccEEEeeccceehh
Q 003795 414 DVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEI 490 (795)
Q Consensus 414 ~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el---~~~~~~is~se~~~~ 490 (795)
...+..+.|.......+.+.+..+... ...|||.|.+||||..+||+|-... ..||+.++|+.+-+.
T Consensus 219 ~~~~~~iIG~S~am~~ll~~i~~VA~S----------d~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPes 288 (550)
T COG3604 219 VLEVGGIIGRSPAMRQLLKEIEVVAKS----------DSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPES 288 (550)
T ss_pred hcccccceecCHHHHHHHHHHHHHhcC----------CCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccchH
Confidence 445556778888887777777765432 1238999999999999999997644 679999999987654
Q ss_pred -----hhccchhhHHhHHHHHHh--------cCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhc-----cc
Q 003795 491 -----YVGVGASRVRSLYQEAKD--------NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDG-----FE 552 (795)
Q Consensus 491 -----~~g~~~~~l~~lf~~ar~--------~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~-----~~ 552 (795)
.+|...+ .|.-|.. ...+-+|+|||-.+... ....||..+.. +.
T Consensus 289 LlESELFGHeKG----AFTGA~~~r~GrFElAdGGTLFLDEIGelPL~--------------lQaKLLRvLQegEieRvG 350 (550)
T COG3604 289 LLESELFGHEKG----AFTGAINTRRGRFELADGGTLFLDEIGELPLA--------------LQAKLLRVLQEGEIERVG 350 (550)
T ss_pred HHHHHHhccccc----ccccchhccCcceeecCCCeEechhhccCCHH--------------HHHHHHHHHhhcceeecC
Confidence 3443333 2322221 12457999999776433 56677766553 11
Q ss_pred C----CCcEEEEeccCCCCCCCccccCCCcccc-------eecCCCCCHHHHHH---HH-HHHHcc----CCC-C---Ch
Q 003795 553 G----RGNVITIASTNRPDILDPALVRPGRFDR-------KIFIPKPGLIGRME---IL-KVHARK----KPM-A---DD 609 (795)
Q Consensus 553 ~----~~~VlVIatTN~~d~LdpaLlrpgRFd~-------~I~~~~Pd~~eR~~---Il-~~~l~~----~~~-~---~d 609 (795)
+ .-.|-||++||.- |..+. +.|+|-. ++.+..|...+|.+ ++ .+++.+ ... . +.
T Consensus 351 ~~r~ikVDVRiIAATNRD--L~~~V-~~G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~ 427 (550)
T COG3604 351 GDRTIKVDVRVIAATNRD--LEEMV-RDGEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSA 427 (550)
T ss_pred CCceeEEEEEEEeccchh--HHHHH-HcCcchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCH
Confidence 1 2358899999972 32222 2244321 44455566666543 22 233322 222 1 12
Q ss_pred hhHHHHHhhCCCCcHHHHHHHHHHHHHHH
Q 003795 610 VDYLAVASMTDGMVGAELANIVEVAAINM 638 (795)
Q Consensus 610 ~dl~~LA~~t~G~sgadL~~lv~~A~~~A 638 (795)
.-+..|..+.---+.++|++++++|++.|
T Consensus 428 ~Al~~L~~y~wPGNVRELen~veRavlla 456 (550)
T COG3604 428 EALELLSSYEWPGNVRELENVVERAVLLA 456 (550)
T ss_pred HHHHHHHcCCCCCcHHHHHHHHHHHHHHh
Confidence 23455555554457799999999999877
No 226
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=98.22 E-value=1.3e-06 Score=92.50 Aligned_cols=52 Identities=23% Similarity=0.270 Sum_probs=43.1
Q ss_pred HHHHhccccccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEee
Q 003795 432 EIVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 483 (795)
Q Consensus 432 ~lv~~~~~~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is 483 (795)
++...|....+++++++.++.| +.|.||||||||||+|+|++.+.+.-+.+.
T Consensus 7 ~ls~~y~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~ 60 (258)
T COG1120 7 NLSFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVL 60 (258)
T ss_pred EEEEEECCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEE
Confidence 3444567778889999999998 889999999999999999998877655443
No 227
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.22 E-value=4e-05 Score=80.82 Aligned_cols=156 Identities=21% Similarity=0.249 Sum_probs=103.5
Q ss_pred ceEEECCCCCchhHHHHHhhhhc-c--ccEEEeeccceehh---------------------hhccch-hhHHhHHHHHH
Q 003795 453 GILLCGPPGVGKTLLAKAVAGEA-G--VNFFSISASQFVEI---------------------YVGVGA-SRVRSLYQEAK 507 (795)
Q Consensus 453 giLL~GPpGtGKTtLakaLA~el-~--~~~~~is~se~~~~---------------------~~g~~~-~~l~~lf~~ar 507 (795)
.+++|||+|+||-|.+-+|.+++ | ..-..+....|... -+|... --++.+...+.
T Consensus 36 Hll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlEitPSDaG~~DRvViQellKevA 115 (351)
T KOG2035|consen 36 HLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEVA 115 (351)
T ss_pred eEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEEeChhhcCcccHHHHHHHHHHHH
Confidence 38999999999999999998876 2 11111111111110 012111 12344444443
Q ss_pred hc---------CCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcccCCCcEEEEeccCCCCCCCccccCCCc
Q 003795 508 DN---------APSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGR 578 (795)
Q Consensus 508 ~~---------~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVIatTN~~d~LdpaLlrpgR 578 (795)
+. ...+++|.|.|.+..+ ....|-..|+... +++-+|..+|....+-+++++ |
T Consensus 116 Qt~qie~~~qr~fKvvvi~ead~LT~d--------------AQ~aLRRTMEkYs--~~~RlIl~cns~SriIepIrS--R 177 (351)
T KOG2035|consen 116 QTQQIETQGQRPFKVVVINEADELTRD--------------AQHALRRTMEKYS--SNCRLILVCNSTSRIIEPIRS--R 177 (351)
T ss_pred hhcchhhccccceEEEEEechHhhhHH--------------HHHHHHHHHHHHh--cCceEEEEecCcccchhHHhh--h
Confidence 32 3458999999998655 6677777777443 456777778888888899988 4
Q ss_pred ccceecCCCCCHHHHHHHHHHHHccCCCC-ChhhHHHHHhhCCCCcHHHH
Q 003795 579 FDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAEL 627 (795)
Q Consensus 579 Fd~~I~~~~Pd~~eR~~Il~~~l~~~~~~-~d~dl~~LA~~t~G~sgadL 627 (795)
.- .|.+|.|+.++...++...+.+..+. +..-+..+|..+.|--.+.|
T Consensus 178 Cl-~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~rIa~kS~~nLRrAl 226 (351)
T KOG2035|consen 178 CL-FIRVPAPSDEEITSVLSKVLKKEGLQLPKELLKRIAEKSNRNLRRAL 226 (351)
T ss_pred ee-EEeCCCCCHHHHHHHHHHHHHHhcccCcHHHHHHHHHHhcccHHHHH
Confidence 32 68999999999999999888776654 33446678888877666555
No 228
>PRK08116 hypothetical protein; Validated
Probab=98.21 E-value=9.9e-07 Score=94.70 Aligned_cols=122 Identities=20% Similarity=0.264 Sum_probs=70.4
Q ss_pred CceEEECCCCCchhHHHHHhhhhc---cccEEEeeccceehhhhc----cchhhHHhHHHHHHhcCCceeEhHHHHHHhh
Q 003795 452 GGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEIYVG----VGASRVRSLYQEAKDNAPSVVFIDELDAVGR 524 (795)
Q Consensus 452 ~giLL~GPpGtGKTtLakaLA~el---~~~~~~is~se~~~~~~g----~~~~~l~~lf~~ar~~~p~Il~IDEID~l~~ 524 (795)
.|++|+|++|+|||+|+.+|++.+ +.+++.++.+++...+.. ........+++... ..++|+|||+....
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~--~~dlLviDDlg~e~- 191 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLV--NADLLILDDLGAER- 191 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhc--CCCEEEEecccCCC-
Confidence 469999999999999999999975 677888888776554321 11111222333332 34599999984321
Q ss_pred hccCCCCCCcchHHHHHHHHHHhhhcccCCCcEEEEeccCCC-CC----CCccccCCCcc---cceecCCCCCH
Q 003795 525 ERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRP-DI----LDPALVRPGRF---DRKIFIPKPGL 590 (795)
Q Consensus 525 ~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVIatTN~~-d~----LdpaLlrpgRF---d~~I~~~~Pd~ 590 (795)
..+. ....|+..++..... +..+|.|||.+ +. ++..+.+ |+ ...|.+.-|+.
T Consensus 192 --------~t~~---~~~~l~~iin~r~~~-~~~~IiTsN~~~~eL~~~~~~ri~s--Rl~e~~~~v~~~g~d~ 251 (268)
T PRK08116 192 --------DTEW---AREKVYNIIDSRYRK-GLPTIVTTNLSLEELKNQYGKRIYD--RILEMCTPVENEGKSY 251 (268)
T ss_pred --------CCHH---HHHHHHHHHHHHHHC-CCCEEEECCCCHHHHHHHHhHHHHH--HHHHcCEEEEeeCcCh
Confidence 1122 344455555543333 33466677654 22 3555555 53 22355555553
No 229
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.20 E-value=7.1e-07 Score=94.10 Aligned_cols=54 Identities=24% Similarity=0.331 Sum_probs=43.2
Q ss_pred HHHHHhccccccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeec
Q 003795 431 EEIVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (795)
Q Consensus 431 ~~lv~~~~~~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (795)
+++...|.+...+.++++.++.| +.|+||||+|||||+|+|.|.+.+..+++..
T Consensus 8 ~nl~v~y~~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~ 63 (254)
T COG1121 8 ENLTVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKI 63 (254)
T ss_pred eeeEEEECCEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEE
Confidence 34445566435788899999988 8899999999999999999988777666653
No 230
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.20 E-value=8.4e-07 Score=90.57 Aligned_cols=55 Identities=24% Similarity=0.452 Sum_probs=46.5
Q ss_pred HHHHHHhccccccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeec
Q 003795 430 LEEIVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (795)
Q Consensus 430 l~~lv~~~~~~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (795)
++++.++|+....+++.++.+.+| ++|+||+|+|||||+|+|.+...+..+.|..
T Consensus 5 i~~l~K~fg~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i 61 (240)
T COG1126 5 IKNLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITV 61 (240)
T ss_pred EEeeeEEeCCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEE
Confidence 456777888899999999999999 9999999999999999999976666555544
No 231
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=98.20 E-value=4.3e-07 Score=100.12 Aligned_cols=57 Identities=26% Similarity=0.315 Sum_probs=47.6
Q ss_pred HHHHHHhccccccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeeccc
Q 003795 430 LEEIVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQ 486 (795)
Q Consensus 430 l~~lv~~~~~~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~se 486 (795)
++++.+.|+......++++.+..| +.|.||+||||||++|+|||...+..+.|....
T Consensus 8 i~~v~k~yg~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G 66 (352)
T COG3842 8 IRNVSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDG 66 (352)
T ss_pred EEeeeeecCCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC
Confidence 345666777777888999999998 779999999999999999999888877765543
No 232
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.15 E-value=4.2e-06 Score=83.68 Aligned_cols=97 Identities=28% Similarity=0.405 Sum_probs=64.7
Q ss_pred CceEEECCCCCchhHHHHHhhhhc---cccEEEeeccceehh-----hhccchh-------hHHhHHHHHHhcCCceeEh
Q 003795 452 GGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEI-----YVGVGAS-------RVRSLYQEAKDNAPSVVFI 516 (795)
Q Consensus 452 ~giLL~GPpGtGKTtLakaLA~el---~~~~~~is~se~~~~-----~~g~~~~-------~l~~lf~~ar~~~p~Il~I 516 (795)
..|+|+|++||||+.+|++|-... +.||+.++|+.+... .+|.... .-..+++.+. .+.+||
T Consensus 23 ~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~LFG~~~~~~~~~~~~~~G~l~~A~---~GtL~L 99 (168)
T PF00158_consen 23 LPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESELFGHEKGAFTGARSDKKGLLEQAN---GGTLFL 99 (168)
T ss_dssp S-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHHHEBCSSSSTTTSSEBEHHHHHTT---TSEEEE
T ss_pred CCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhhhccccccccccccccCCceeecc---ceEEee
Confidence 458999999999999999998754 569999999986543 3333211 1124555553 458999
Q ss_pred HHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhccc---------CCCcEEEEeccCC
Q 003795 517 DELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE---------GRGNVITIASTNR 565 (795)
Q Consensus 517 DEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~---------~~~~VlVIatTN~ 565 (795)
|||+.+... +...|+..|+.-. ...++-||++||.
T Consensus 100 d~I~~L~~~--------------~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~ 143 (168)
T PF00158_consen 100 DEIEDLPPE--------------LQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSK 143 (168)
T ss_dssp ETGGGS-HH--------------HHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS
T ss_pred cchhhhHHH--------------HHHHHHHHHhhchhccccccccccccceEEeecCc
Confidence 999998765 6677777766311 1247899999885
No 233
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=98.15 E-value=6.2e-07 Score=98.40 Aligned_cols=56 Identities=27% Similarity=0.389 Sum_probs=44.3
Q ss_pred HHHHHhccccccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeeccc
Q 003795 431 EEIVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQ 486 (795)
Q Consensus 431 ~~lv~~~~~~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~se 486 (795)
+++.+.|++.....++++.+..| +.|+||+|||||||+|+|||...+..++|..++
T Consensus 7 ~~v~K~yg~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g 64 (338)
T COG3839 7 KNVRKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDG 64 (338)
T ss_pred eeeEEEcCCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC
Confidence 34455565443567788888888 889999999999999999999888887776554
No 234
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=98.15 E-value=2.1e-06 Score=100.03 Aligned_cols=56 Identities=23% Similarity=0.337 Sum_probs=47.9
Q ss_pred HHHHHhccccccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeeccc
Q 003795 431 EEIVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQ 486 (795)
Q Consensus 431 ~~lv~~~~~~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~se 486 (795)
.++...|+...++.+.++.+..| +.|+|+||+|||||+|+|+|...+..+.|....
T Consensus 7 ~~ls~~~g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~ 64 (530)
T COG0488 7 ENLSLAYGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPK 64 (530)
T ss_pred eeeEEeeCCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecC
Confidence 44556677888999999999888 999999999999999999999988877776654
No 235
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=98.15 E-value=3.1e-05 Score=89.23 Aligned_cols=226 Identities=15% Similarity=0.183 Sum_probs=132.3
Q ss_pred ccccCccCchHHHHHHHHHHHhccccccccccCcccCC--ceEEECCCCCchhHHHHHhhhhccccEEEeeccceeh---
Q 003795 415 VKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPG--GILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVE--- 489 (795)
Q Consensus 415 ~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~~--giLL~GPpGtGKTtLakaLA~el~~~~~~is~se~~~--- 489 (795)
-.|+.+.|.+.++.++. ...|+.......-|.++.+ +||++|.||+|||-++++.++.+...++ +++..-..
T Consensus 342 Sl~PsIyGhe~VK~Gil--L~LfGGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~vY-tsGkaSSaAGL 418 (764)
T KOG0480|consen 342 SLFPSIYGHELVKAGIL--LSLFGGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRSVY-TSGKASSAAGL 418 (764)
T ss_pred hhCccccchHHHHhhHH--HHHhCCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccCCcceE-ecCcccccccc
Confidence 45777888888876663 2334443333333444433 3999999999999999999998765433 32221111
Q ss_pred --hhhccchhhHHhHHHH-H-HhcCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhccc-----------CC
Q 003795 490 --IYVGVGASRVRSLYQE-A-KDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE-----------GR 554 (795)
Q Consensus 490 --~~~g~~~~~l~~lf~~-a-r~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~-----------~~ 554 (795)
..+...... ...++. | .-...+|-.|||+|++..+ -...+...|+... -+
T Consensus 419 TaaVvkD~esg-df~iEAGALmLADnGICCIDEFDKMd~~--------------dqvAihEAMEQQtISIaKAGv~aTLn 483 (764)
T KOG0480|consen 419 TAAVVKDEESG-DFTIEAGALMLADNGICCIDEFDKMDVK--------------DQVAIHEAMEQQTISIAKAGVVATLN 483 (764)
T ss_pred eEEEEecCCCC-ceeeecCcEEEccCceEEechhcccChH--------------hHHHHHHHHHhheehheecceEEeec
Confidence 001000000 001111 0 1123458899999998542 2334444444311 12
Q ss_pred CcEEEEeccCCCC-------------CCCccccCCCccccee-cCCCCCHHHHHHHHHHHHccCCC--------------
Q 003795 555 GNVITIASTNRPD-------------ILDPALVRPGRFDRKI-FIPKPGLIGRMEILKVHARKKPM-------------- 606 (795)
Q Consensus 555 ~~VlVIatTN~~d-------------~LdpaLlrpgRFd~~I-~~~~Pd~~eR~~Il~~~l~~~~~-------------- 606 (795)
.+.-||+|+|+.. .+.+++++ |||..+ -++.|+...-..|-++.+.....
T Consensus 484 ARtSIlAAANPv~GhYdR~ktl~eNi~msApimS--RFDL~FiLlD~~nE~~D~~ia~hIld~h~~i~~~~~~~~~~~~e 561 (764)
T KOG0480|consen 484 ARTSILAAANPVGGHYDRKKTLRENINMSAPIMS--RFDLFFILLDDCNEVVDYAIARHILDLHRGIDDATERVCVYTLE 561 (764)
T ss_pred chhhhhhhcCCcCCccccccchhhhcCCCchhhh--hhcEEEEEecCCchHHHHHHHHHHHHHhccccccccccccccHH
Confidence 3456789998754 46789999 999754 45778777666555544432210
Q ss_pred ---------------CChhhHHHHH---------------hhCCCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Q 003795 607 ---------------ADDVDYLAVA---------------SMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQ 656 (795)
Q Consensus 607 ---------------~~d~dl~~LA---------------~~t~G~sgadL~~lv~~A~~~A~~~~~~~It~edl~~Al~ 656 (795)
.....-..+. +.+.+.|.++|+.+++-+-.+|...-+..+|.+|+.+|++
T Consensus 562 ~vrkYi~yAR~~~P~ls~ea~~~lve~Y~~lR~~~~~~~~~~s~~ITvRqLESlIRLsEA~Ar~~~~devt~~~v~ea~e 641 (764)
T KOG0480|consen 562 QVRKYIRYARNFKPKLSKEASEMLVEKYKGLRQRDAQGNNRSSYRITVRQLESLIRLSEARARVECRDEVTKEDVEEAVE 641 (764)
T ss_pred HHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHhhccccCcccccccHHHHHHHHHHHHHHHhhhhhhhccHHHHHHHHH
Confidence 0000000010 1133678899999999888888888888999999999988
Q ss_pred HHHh
Q 003795 657 IEER 660 (795)
Q Consensus 657 ~~~~ 660 (795)
.-++
T Consensus 642 Llk~ 645 (764)
T KOG0480|consen 642 LLKK 645 (764)
T ss_pred HHHh
Confidence 5544
No 236
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.15 E-value=7e-06 Score=88.64 Aligned_cols=119 Identities=18% Similarity=0.210 Sum_probs=82.3
Q ss_pred cccCCceEEECCCCCchhHHHHHhhhhccc----------------cEEEeeccceehhhhccchhhHHhHHHHHHh---
Q 003795 448 VRIPGGILLCGPPGVGKTLLAKAVAGEAGV----------------NFFSISASQFVEIYVGVGASRVRSLYQEAKD--- 508 (795)
Q Consensus 448 l~i~~giLL~GPpGtGKTtLakaLA~el~~----------------~~~~is~se~~~~~~g~~~~~l~~lf~~ar~--- 508 (795)
-+++.+++|+||.|+||+++|..+|..+-+ ++..+....-. .. -....++.+.+.+..
T Consensus 16 ~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~-~~--I~idqiR~l~~~~~~~p~ 92 (290)
T PRK05917 16 QKVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKG-RL--HSIETPRAIKKQIWIHPY 92 (290)
T ss_pred CCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCC-Cc--CcHHHHHHHHHHHhhCcc
Confidence 356777999999999999999999886522 22222211100 00 012234555544433
Q ss_pred -cCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcccCCCcEEEEeccCCCCCCCccccCCCcccceecCCC
Q 003795 509 -NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPK 587 (795)
Q Consensus 509 -~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVIatTN~~d~LdpaLlrpgRFd~~I~~~~ 587 (795)
....|++||++|.+... ..|.||..++ .+..++++|..|+.++.+.|.+++ |.. .+.|++
T Consensus 93 e~~~kv~ii~~ad~mt~~--------------AaNaLLK~LE--EPp~~~~fiL~~~~~~~ll~TI~S--Rcq-~~~~~~ 153 (290)
T PRK05917 93 ESPYKIYIIHEADRMTLD--------------AISAFLKVLE--DPPQHGVIILTSAKPQRLPPTIRS--RSL-SIHIPM 153 (290)
T ss_pred CCCceEEEEechhhcCHH--------------HHHHHHHHhh--cCCCCeEEEEEeCChhhCcHHHHh--cce-EEEccc
Confidence 33468999999999765 7899999999 677889999889899999999998 654 566665
Q ss_pred C
Q 003795 588 P 588 (795)
Q Consensus 588 P 588 (795)
+
T Consensus 154 ~ 154 (290)
T PRK05917 154 E 154 (290)
T ss_pred h
Confidence 4
No 237
>PF13173 AAA_14: AAA domain
Probab=98.14 E-value=6e-06 Score=78.46 Aligned_cols=67 Identities=28% Similarity=0.381 Sum_probs=44.0
Q ss_pred eEEECCCCCchhHHHHHhhhhcc--ccEEEeeccceehhhhccchhhHHhHHHHHHhcCCceeEhHHHHHH
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEAG--VNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAV 522 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el~--~~~~~is~se~~~~~~g~~~~~l~~lf~~ar~~~p~Il~IDEID~l 522 (795)
++|+||.||||||+++.++..+. ...+++++.+......... . +...+.........++||||++.+
T Consensus 5 ~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~i~iDEiq~~ 73 (128)
T PF13173_consen 5 IILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADP-D-LLEYFLELIKPGKKYIFIDEIQYL 73 (128)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhh-h-hHHHHHHhhccCCcEEEEehhhhh
Confidence 79999999999999999998775 6777787765433211100 0 112222221124578999999887
No 238
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.12 E-value=5.5e-05 Score=84.86 Aligned_cols=182 Identities=18% Similarity=0.170 Sum_probs=112.1
Q ss_pred CcccCCceEEECCCCCchhHHHHHhhhhc-----cccEEEeeccceehh----------h----hccchh-hHHhHHHHH
Q 003795 447 GVRIPGGILLCGPPGVGKTLLAKAVAGEA-----GVNFFSISASQFVEI----------Y----VGVGAS-RVRSLYQEA 506 (795)
Q Consensus 447 gl~i~~giLL~GPpGtGKTtLakaLA~el-----~~~~~~is~se~~~~----------~----~g~~~~-~l~~lf~~a 506 (795)
...-++++.+.|-||+|||.++.-+...+ .+..+++++.++... + .+.+.+ .....|+..
T Consensus 171 e~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h 250 (529)
T KOG2227|consen 171 ELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIFSSLLQDLVSPGTGMQHLEKFEKH 250 (529)
T ss_pred hcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 34455669999999999999988665533 234477777654332 1 111111 122333332
Q ss_pred -Hhc-CCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcccCCCcEEEEeccCCCCCCCcccc---C-CCccc
Q 003795 507 -KDN-APSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALV---R-PGRFD 580 (795)
Q Consensus 507 -r~~-~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVIatTN~~d~LdpaLl---r-pgRFd 580 (795)
... .+-++++||+|.+..... .++..+. ++.. ..+..+++|+-+|..|.-|..|. . .+--+
T Consensus 251 ~~q~k~~~llVlDEmD~L~tr~~-----------~vLy~lF-ewp~-lp~sr~iLiGiANslDlTdR~LprL~~~~~~~P 317 (529)
T KOG2227|consen 251 TKQSKFMLLLVLDEMDHLITRSQ-----------TVLYTLF-EWPK-LPNSRIILIGIANSLDLTDRFLPRLNLDLTIKP 317 (529)
T ss_pred HhcccceEEEEechhhHHhhccc-----------ceeeeeh-hccc-CCcceeeeeeehhhhhHHHHHhhhhhhccCCCC
Confidence 222 356899999999974421 1333332 2222 34567889999998876544332 1 23345
Q ss_pred ceecCCCCCHHHHHHHHHHHHccCCCCChh--hHHHHHhhCCCCcHH--HHHHHHHHHHHHHHHc
Q 003795 581 RKIFIPKPGLIGRMEILKVHARKKPMADDV--DYLAVASMTDGMVGA--ELANIVEVAAINMMRD 641 (795)
Q Consensus 581 ~~I~~~~Pd~~eR~~Il~~~l~~~~~~~d~--dl~~LA~~t~G~sga--dL~~lv~~A~~~A~~~ 641 (795)
..+.|++++.++..+|+...+......... .+...|+...|.||. .+-.+|+.|...+...
T Consensus 318 ~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~aiEI~E~e 382 (529)
T KOG2227|consen 318 KLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCRRAIEIAEIE 382 (529)
T ss_pred ceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHH
Confidence 688999999999999999999877655433 355677777777762 3335566666555543
No 239
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.12 E-value=1.6e-06 Score=87.39 Aligned_cols=74 Identities=24% Similarity=0.186 Sum_probs=48.4
Q ss_pred cccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeeccceehhhhccc---hh--hHHhHHHHHHhcCCceeEhHHHH
Q 003795 448 VRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVG---AS--RVRSLYQEAKDNAPSVVFIDELD 520 (795)
Q Consensus 448 l~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~se~~~~~~g~~---~~--~l~~lf~~ar~~~p~Il~IDEID 520 (795)
+.++.| +.|+||||+|||||+++|++...+..+.+......-.|..+. .. .-+-.+..+....|.++++||.-
T Consensus 20 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lllLDEPt 99 (177)
T cd03222 20 GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYLFDEPS 99 (177)
T ss_pred cEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEEEECCc
Confidence 566666 889999999999999999998877767666543111111111 11 11223444555678899999974
Q ss_pred H
Q 003795 521 A 521 (795)
Q Consensus 521 ~ 521 (795)
.
T Consensus 100 s 100 (177)
T cd03222 100 A 100 (177)
T ss_pred c
Confidence 3
No 240
>PRK09183 transposase/IS protein; Provisional
Probab=98.12 E-value=6e-06 Score=88.25 Aligned_cols=69 Identities=33% Similarity=0.453 Sum_probs=45.2
Q ss_pred ceEEECCCCCchhHHHHHhhhhc---cccEEEeeccceehhhhc-cchhhHHhHHHHHHhcCCceeEhHHHHHH
Q 003795 453 GILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEIYVG-VGASRVRSLYQEAKDNAPSVVFIDELDAV 522 (795)
Q Consensus 453 giLL~GPpGtGKTtLakaLA~el---~~~~~~is~se~~~~~~g-~~~~~l~~lf~~ar~~~p~Il~IDEID~l 522 (795)
+++|+||||||||+|+.+|+..+ |..+..+++.++...+.. .....+...++.. ...+++++|||+...
T Consensus 104 ~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-~~~~dlLiiDdlg~~ 176 (259)
T PRK09183 104 NIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDEIGYL 176 (259)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-hcCCCEEEEcccccC
Confidence 48999999999999999997754 556666666665533221 1112233445443 245679999999654
No 241
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.12 E-value=3.3e-05 Score=82.00 Aligned_cols=89 Identities=10% Similarity=0.104 Sum_probs=65.1
Q ss_pred CCCCCccccCCCcccceecCCCCCHHHHHHHHHHHHccCCCCC-hhhHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCC
Q 003795 566 PDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMAD-DVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRT 644 (795)
Q Consensus 566 ~d~LdpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~~~~~-d~dl~~LA~~t~G~sgadL~~lv~~A~~~A~~~~~~ 644 (795)
|.-||-.|+. |.- +|.-.+++.++...||+..+.+..+.- +..++.|......-|-+--.+|+..|...+.++...
T Consensus 339 phGiP~D~lD--R~l-II~t~py~~~d~~~IL~iRc~EEdv~m~~~A~d~Lt~i~~~tsLRYai~Lit~a~~~~~krk~~ 415 (454)
T KOG2680|consen 339 PHGIPIDLLD--RML-IISTQPYTEEDIKKILRIRCQEEDVEMNPDALDLLTKIGEATSLRYAIHLITAASLVCLKRKGK 415 (454)
T ss_pred CCCCcHHHhh--hhh-eeecccCcHHHHHHHHHhhhhhhccccCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhcCc
Confidence 4456767776 543 667778999999999998887654332 222445555555556666678999999999999888
Q ss_pred ccCHHHHHHHHHH
Q 003795 645 EITTDDLLQAAQI 657 (795)
Q Consensus 645 ~It~edl~~Al~~ 657 (795)
.+..+|+..+...
T Consensus 416 ~v~~~di~r~y~L 428 (454)
T KOG2680|consen 416 VVEVDDIERVYRL 428 (454)
T ss_pred eeehhHHHHHHHH
Confidence 9999999998763
No 242
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=98.12 E-value=2.6e-06 Score=94.27 Aligned_cols=189 Identities=21% Similarity=0.221 Sum_probs=103.9
Q ss_pred ceEEECCCCCchhHHHHHhhhhccccEEEeeccceehh----hhccchhhHHhHHH--HHHhcCCceeEhHHHHHHhhhc
Q 003795 453 GILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEI----YVGVGASRVRSLYQ--EAKDNAPSVVFIDELDAVGRER 526 (795)
Q Consensus 453 giLL~GPpGtGKTtLakaLA~el~~~~~~is~se~~~~----~~g~~~~~l~~lf~--~ar~~~p~Il~IDEID~l~~~r 526 (795)
++||+|.||+|||.|++.++...... +++++...... .+......-...++ ..-....+|++|||+|.+...
T Consensus 59 hiLlvGdpg~gKS~ll~~~~~~~pr~-v~~~g~~~s~~gLta~~~~d~~~~~~~leaGalvlad~GiccIDe~dk~~~~- 136 (331)
T PF00493_consen 59 HILLVGDPGTGKSQLLKYVAKLAPRS-VYTSGKGSSAAGLTASVSRDPVTGEWVLEAGALVLADGGICCIDEFDKMKED- 136 (331)
T ss_dssp -EEEECSCHHCHHHHHHCCCCT-SSE-EEEECCGSTCCCCCEEECCCGGTSSECEEE-HHHHCTTSEEEECTTTT--CH-
T ss_pred ceeeccchhhhHHHHHHHHHhhCCce-EEECCCCcccCCccceeccccccceeEEeCCchhcccCceeeecccccccch-
Confidence 39999999999999999987665433 33433321110 01000000000000 011224569999999998543
Q ss_pred cCCCCCCcchHHHHHHHHHHhhhccc-----------CCCcEEEEeccCCCC-------------CCCccccCCCcccce
Q 003795 527 GLIKGSGGQERDATLNQLLVCLDGFE-----------GRGNVITIASTNRPD-------------ILDPALVRPGRFDRK 582 (795)
Q Consensus 527 ~~~~~Sgge~~r~~l~~LL~~ld~~~-----------~~~~VlVIatTN~~d-------------~LdpaLlrpgRFd~~ 582 (795)
....|+..|+... -+.+.-|++++|+.. .+++.|++ |||.+
T Consensus 137 -------------~~~~l~eaMEqq~isi~kagi~~~l~ar~svlaa~NP~~g~~~~~~~~~~ni~l~~~LLS--RFDLi 201 (331)
T PF00493_consen 137 -------------DRDALHEAMEQQTISIAKAGIVTTLNARCSVLAAANPKFGRYDPNKSLSENINLPPPLLS--RFDLI 201 (331)
T ss_dssp -------------HHHHHHHHHHCSCEEECTSSSEEEEE---EEEEEE--TT--S-TTS-CGCCT-S-CCCHC--C-SEE
T ss_pred -------------HHHHHHHHHHcCeeccchhhhcccccchhhhHHHHhhhhhhcchhhhhHHhcccchhhHh--hcCEE
Confidence 4556666666411 124577889998765 47889999 99988
Q ss_pred ecC-CCCCHHHHHHHHHHHHccCCCCC------------hhh------HHHHHh--------------------------
Q 003795 583 IFI-PKPGLIGRMEILKVHARKKPMAD------------DVD------YLAVAS-------------------------- 617 (795)
Q Consensus 583 I~~-~~Pd~~eR~~Il~~~l~~~~~~~------------d~d------l~~LA~-------------------------- 617 (795)
+.+ ..|+.+.-..|.++.+....... .++ +-.+|+
T Consensus 202 f~l~D~~d~~~D~~la~~il~~~~~~~~~~~~~~~~~~~~~~~~~lr~yI~yar~~~~P~ls~ea~~~I~~~Yv~lR~~~ 281 (331)
T PF00493_consen 202 FLLRDKPDEEEDERLAEHILDSHRNGKKSKEKKIKKNDKPISEDLLRKYIAYARQNIHPVLSEEAKELIINYYVELRKES 281 (331)
T ss_dssp ECC--TTT-HHHHHHHHHHHTTT---S--------SSS-TT-HCCCHHHHHHHHHHC--EE-HHCHHHHHHHHCCCCHCH
T ss_pred EEeccccccccccccceEEEeccccccccccccccccCCccCHHHHHHHHHHHHhhcccccCHHHHHHHHHHHHHhcccc
Confidence 765 56776555555554433221000 000 111221
Q ss_pred ----hCCCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHH
Q 003795 618 ----MTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIE 658 (795)
Q Consensus 618 ----~t~G~sgadL~~lv~~A~~~A~~~~~~~It~edl~~Al~~~ 658 (795)
.....|.+.|..+++-|...|..+-+..|+.+|+..|+...
T Consensus 282 ~~~~~~~~iT~R~LeSLIRLseA~AKl~lr~~V~~~Dv~~Ai~L~ 326 (331)
T PF00493_consen 282 KSNNKSIPITIRQLESLIRLSEAHAKLRLRDEVTEEDVEEAIRLF 326 (331)
T ss_dssp HCHSS-B-SSCCCCCHHHHHHHHHHHCTTSSECSHHHHHHHHHHH
T ss_pred cccccccccchhhHHHHHHHHHHHHHHhccCceeHHHHHHHHHHH
Confidence 01235667889999999999998999999999999998743
No 243
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.10 E-value=1.2e-05 Score=86.31 Aligned_cols=158 Identities=20% Similarity=0.247 Sum_probs=94.9
Q ss_pred ceEEECCCCCchhHHHHHhhhhccccEEEeeccceehhhhccchhhH---HhHHHHHHh-------cCCceeEhHHHHHH
Q 003795 453 GILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRV---RSLYQEAKD-------NAPSVVFIDELDAV 522 (795)
Q Consensus 453 giLL~GPpGtGKTtLakaLA~el~~~~~~is~se~~~~~~g~~~~~l---~~lf~~ar~-------~~p~Il~IDEID~l 522 (795)
+.|++||||+|||+...+.|..+..+...-++--..+..-..+..-+ -..|...+. ..+..+++||.|.+
T Consensus 64 h~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelnaSd~rgid~vr~qi~~fast~~~~~fst~~~fKlvILDEADaM 143 (360)
T KOG0990|consen 64 HLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNASDDRGIDPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAM 143 (360)
T ss_pred cccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhccCccCCcchHHHHHHHHhhccceeccccCceeEEEecchhHh
Confidence 58999999999999999999887553211111000000000111111 123444432 25678999999998
Q ss_pred hhhccCCCCCCcchHHHHHHHHHHhhhcccCCCcEEEEeccCCCCCCCccccCCCcccceecCCCCCHHHHHHHHHHHHc
Q 003795 523 GRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHAR 602 (795)
Q Consensus 523 ~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVIatTN~~d~LdpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~ 602 (795)
..+ ..++|-..+..+.. ++-|..-+|++..+.|++++ ||. .+.|.+.+...-...+.+++.
T Consensus 144 T~~--------------AQnALRRviek~t~--n~rF~ii~n~~~ki~pa~qs--Rct-rfrf~pl~~~~~~~r~shi~e 204 (360)
T KOG0990|consen 144 TRD--------------AQNALRRVIEKYTA--NTRFATISNPPQKIHPAQQS--RCT-RFRFAPLTMAQQTERQSHIRE 204 (360)
T ss_pred hHH--------------HHHHHHHHHHHhcc--ceEEEEeccChhhcCchhhc--ccc-cCCCCCCChhhhhhHHHHHHh
Confidence 655 67777777775544 45555667999999999998 776 566667777777777777665
Q ss_pred cCCCCCh-hhHHHHHhhCCCCcHHHHHHHHHH
Q 003795 603 KKPMADD-VDYLAVASMTDGMVGAELANIVEV 633 (795)
Q Consensus 603 ~~~~~~d-~dl~~LA~~t~G~sgadL~~lv~~ 633 (795)
.....-. .-...+++.+. +|+...++.
T Consensus 205 ~e~~~~~~~~~~a~~r~s~----gDmr~a~n~ 232 (360)
T KOG0990|consen 205 SEQKETNPEGYSALGRLSV----GDMRVALNY 232 (360)
T ss_pred cchhhcCHHHHHHHHHHhH----HHHHHHHHH
Confidence 4433222 22334555444 444444443
No 244
>PRK06526 transposase; Provisional
Probab=98.10 E-value=2e-06 Score=91.70 Aligned_cols=70 Identities=26% Similarity=0.416 Sum_probs=44.8
Q ss_pred CCceEEECCCCCchhHHHHHhhhhc---cccEEEeeccceehhhhcc-chhhHHhHHHHHHhcCCceeEhHHHHHH
Q 003795 451 PGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEIYVGV-GASRVRSLYQEAKDNAPSVVFIDELDAV 522 (795)
Q Consensus 451 ~~giLL~GPpGtGKTtLakaLA~el---~~~~~~is~se~~~~~~g~-~~~~l~~lf~~ar~~~p~Il~IDEID~l 522 (795)
+.+++|+||||||||+|+.+|+.++ |..+..+++.+++...... ..+.+...+... ..+++++|||++..
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l--~~~dlLIIDD~g~~ 171 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKL--GRYPLLIVDEVGYI 171 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHh--ccCCEEEEcccccC
Confidence 3469999999999999999998865 5555556666555442211 111122222222 34679999999765
No 245
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=98.09 E-value=1.7e-05 Score=94.07 Aligned_cols=220 Identities=23% Similarity=0.269 Sum_probs=118.5
Q ss_pred ccCccCchHHHHHHHHHHHhccccccccccCcccCC--ceEEECCCCCchhHHHHHhhhhccccEEEeeccceehhhhcc
Q 003795 417 FSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPG--GILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGV 494 (795)
Q Consensus 417 f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~~--giLL~GPpGtGKTtLakaLA~el~~~~~~is~se~~~~~~g~ 494 (795)
.+.+.|.+.++..+- ...|+.......-|.++.+ +|||+|.||+|||.|++.+++.+...++. ++.. +..+|-
T Consensus 285 aPsIyG~e~VKkAil--LqLfgGv~k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr~vyt-sgkg--ss~~GL 359 (682)
T COG1241 285 APSIYGHEDVKKAIL--LQLFGGVKKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPRGVYT-SGKG--SSAAGL 359 (682)
T ss_pred cccccCcHHHHHHHH--HHhcCCCcccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCCceEEE-cccc--ccccCc
Confidence 445667777665442 2233333322222333333 39999999999999999999876544332 1111 001111
Q ss_pred chhhHHhHH--H---HH---HhcCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcc----c-------CCC
Q 003795 495 GASRVRSLY--Q---EA---KDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGF----E-------GRG 555 (795)
Q Consensus 495 ~~~~l~~lf--~---~a---r~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~----~-------~~~ 555 (795)
+...++.-+ + .+ --..++|.+|||+|++-.. ....+...|+.. . -+.
T Consensus 360 TAav~rd~~tge~~LeaGALVlAD~Gv~cIDEfdKm~~~--------------dr~aihEaMEQQtIsIaKAGI~atLnA 425 (682)
T COG1241 360 TAAVVRDKVTGEWVLEAGALVLADGGVCCIDEFDKMNEE--------------DRVAIHEAMEQQTISIAKAGITATLNA 425 (682)
T ss_pred eeEEEEccCCCeEEEeCCEEEEecCCEEEEEeccCCChH--------------HHHHHHHHHHhcEeeecccceeeecch
Confidence 111111111 0 00 1134679999999987432 334444444431 1 123
Q ss_pred cEEEEeccCCCC-------------CCCccccCCCcccceecCC-CCCHHHHHH----HHHHHHccC-------------
Q 003795 556 NVITIASTNRPD-------------ILDPALVRPGRFDRKIFIP-KPGLIGRME----ILKVHARKK------------- 604 (795)
Q Consensus 556 ~VlVIatTN~~d-------------~LdpaLlrpgRFd~~I~~~-~Pd~~eR~~----Il~~~l~~~------------- 604 (795)
..-|++|+|+.. .++++|++ |||..+.+. .|+.+.-.. |+..|....
T Consensus 426 RcsvLAAaNP~~Gryd~~~~~~enI~l~~~lLS--RFDLifvl~D~~d~~~D~~ia~hil~~h~~~~~~~~~~~~~~~~~ 503 (682)
T COG1241 426 RCSVLAAANPKFGRYDPKKTVAENINLPAPLLS--RFDLIFVLKDDPDEEKDEEIAEHILDKHRGEEPEETISLDGVDEV 503 (682)
T ss_pred hhhhhhhhCCCCCcCCCCCCHHHhcCCChhHHh--hCCeeEEecCCCCccchHHHHHHHHHHHhcccccccccccccccc
Confidence 456788888764 47889999 999776553 566553333 444442111
Q ss_pred --------------------CCCChhhHHHHH-----hh----------CCCCcHHHHHHHHHHHHHHHHHcCCCccCHH
Q 003795 605 --------------------PMADDVDYLAVA-----SM----------TDGMVGAELANIVEVAAINMMRDGRTEITTD 649 (795)
Q Consensus 605 --------------------~~~~d~dl~~LA-----~~----------t~G~sgadL~~lv~~A~~~A~~~~~~~It~e 649 (795)
+...+.....|. .+ +-..|.++|..+++-|-..|..+-+..|+.+
T Consensus 504 ~~~~~~~lrkYI~YAR~~v~P~lt~ea~e~l~~~Yv~~Rk~~~~~~~~~~~piT~RqLEsiiRLaeA~Ak~rLS~~V~~e 583 (682)
T COG1241 504 EERDFELLRKYISYARKNVTPVLTEEAREELEDYYVEMRKKSALVEEKRTIPITARQLESIIRLAEAHAKMRLSDVVEEE 583 (682)
T ss_pred ccCcHHHHHHHHHHHhccCCcccCHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHHHHHHHHHHhhhccCCCCHH
Confidence 111111111110 11 1225677888888877777777777778888
Q ss_pred HHHHHHHH
Q 003795 650 DLLQAAQI 657 (795)
Q Consensus 650 dl~~Al~~ 657 (795)
|+.+|+..
T Consensus 584 D~~eAi~l 591 (682)
T COG1241 584 DVDEAIRL 591 (682)
T ss_pred HHHHHHHH
Confidence 88887663
No 246
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=98.08 E-value=5.9e-06 Score=86.02 Aligned_cols=48 Identities=21% Similarity=0.174 Sum_probs=41.0
Q ss_pred ccccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeeccc
Q 003795 439 HGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQ 486 (795)
Q Consensus 439 ~~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~se 486 (795)
....+++.++.+..| +.|+|+||+|||||+|.|||...+..+.+.+..
T Consensus 39 ~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G 88 (249)
T COG1134 39 EFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTG 88 (249)
T ss_pred eEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcc
Confidence 345678889999988 999999999999999999999988887776554
No 247
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.07 E-value=9e-06 Score=76.61 Aligned_cols=96 Identities=23% Similarity=0.309 Sum_probs=57.6
Q ss_pred ceEEECCCCCchhHHHHHhhhhc--------cccEEEeeccceehh---------hhc------cchhhH-HhHHHHHHh
Q 003795 453 GILLCGPPGVGKTLLAKAVAGEA--------GVNFFSISASQFVEI---------YVG------VGASRV-RSLYQEAKD 508 (795)
Q Consensus 453 giLL~GPpGtGKTtLakaLA~el--------~~~~~~is~se~~~~---------~~g------~~~~~l-~~lf~~ar~ 508 (795)
.++++||+|+|||++++.++... ..+++.+++...... .++ .....+ ..+.+....
T Consensus 6 ~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l~~ 85 (131)
T PF13401_consen 6 ILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDALDR 85 (131)
T ss_dssp -EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHHHH
T ss_pred ccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHHHh
Confidence 38999999999999999999977 677777776654421 011 111222 333444444
Q ss_pred cCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcccCCCcEEEEecc
Q 003795 509 NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIAST 563 (795)
Q Consensus 509 ~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVIatT 563 (795)
....+++|||+|.+. . ...++.|...++ ..+-.++++++.
T Consensus 86 ~~~~~lviDe~~~l~-~------------~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 86 RRVVLLVIDEADHLF-S------------DEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp CTEEEEEEETTHHHH-T------------HHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred cCCeEEEEeChHhcC-C------------HHHHHHHHHHHh--CCCCeEEEEECh
Confidence 444589999999973 1 226666655555 333345555554
No 248
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=98.06 E-value=6.7e-05 Score=87.15 Aligned_cols=153 Identities=23% Similarity=0.272 Sum_probs=82.2
Q ss_pred CccCchHHHHHHHHHHHhccc-cccccccC-cccCCceEEECCCCCchhHHHHHhhhhccccEEEeeccce----ehhhh
Q 003795 419 DVAGLGKIRLELEEIVKFFTH-GEMYRRRG-VRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQF----VEIYV 492 (795)
Q Consensus 419 ~~~gl~~~~~~l~~lv~~~~~-~~~~~~~g-l~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~se~----~~~~~ 492 (795)
.+.++++++.++.=. .|+. ...+...| ++-.-+|||+|.||||||.+++.+.+.+..-.++ ++-.- ...|+
T Consensus 430 sIye~edvKkglLLq--LfGGt~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg~yT-SGkGsSavGLTayV 506 (804)
T KOG0478|consen 430 SIYELEDVKKGLLLQ--LFGGTRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPRGVYT-SGKGSSAVGLTAYV 506 (804)
T ss_pred hhhcccchhhhHHHH--HhcCCcccccccccccccceEEEecCCCcCHHHHHHHHHHhCCcceee-cCCccchhcceeeE
Confidence 455677777665322 2221 11222222 2222249999999999999999999876543322 21110 01121
Q ss_pred ccchhhHHhHHHHH---HhcCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcc-----------cCCCcEE
Q 003795 493 GVGASRVRSLYQEA---KDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGF-----------EGRGNVI 558 (795)
Q Consensus 493 g~~~~~l~~lf~~a---r~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~-----------~~~~~Vl 558 (795)
-.... -+++..+. --...++-.|||+|++... +-+-|.+.|+.. .-+...-
T Consensus 507 trd~d-tkqlVLesGALVLSD~GiCCIDEFDKM~dS--------------trSvLhEvMEQQTvSIAKAGII~sLNAR~S 571 (804)
T KOG0478|consen 507 TKDPD-TRQLVLESGALVLSDNGICCIDEFDKMSDS--------------TRSVLHEVMEQQTLSIAKAGIIASLNARCS 571 (804)
T ss_pred EecCc-cceeeeecCcEEEcCCceEEchhhhhhhHH--------------HHHHHHHHHHHhhhhHhhcceeeeccccce
Confidence 11111 01111111 1123468899999998543 223333333321 1134567
Q ss_pred EEeccCCCC-------------CCCccccCCCcccceec-CCCCCHH
Q 003795 559 TIASTNRPD-------------ILDPALVRPGRFDRKIF-IPKPGLI 591 (795)
Q Consensus 559 VIatTN~~d-------------~LdpaLlrpgRFd~~I~-~~~Pd~~ 591 (795)
||++.|+.. .|+|.|++ |||.++- +..||..
T Consensus 572 VLAaANP~~skynp~k~i~eNI~LpptLLS--RFDLIylllD~~DE~ 616 (804)
T KOG0478|consen 572 VLAAANPIRSKYNPNKSIIENINLPPTLLS--RFDLIFLLLDKPDER 616 (804)
T ss_pred eeeeeccccccCCCCCchhhccCCChhhhh--hhcEEEEEecCcchh
Confidence 889998543 48999999 9997664 4667765
No 249
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.06 E-value=4.7e-06 Score=84.87 Aligned_cols=54 Identities=20% Similarity=0.354 Sum_probs=42.8
Q ss_pred HHHHhccccccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeecc
Q 003795 432 EIVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 485 (795)
Q Consensus 432 ~lv~~~~~~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~s 485 (795)
+++..+..+.++..+++....| +.|+||||+|||||+|+|.|++.+..+.+...
T Consensus 6 nls~~~~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~ 61 (259)
T COG4559 6 NLSYSLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLN 61 (259)
T ss_pred eeEEEeecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeC
Confidence 3333445566777888888888 78999999999999999999998877766544
No 250
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.05 E-value=3.6e-06 Score=89.89 Aligned_cols=88 Identities=22% Similarity=0.262 Sum_probs=58.3
Q ss_pred HHHHHhccccccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeeccce---ehhhhccchhhHHhHHHH
Q 003795 431 EEIVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQF---VEIYVGVGASRVRSLYQE 505 (795)
Q Consensus 431 ~~lv~~~~~~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~se~---~~~~~g~~~~~l~~lf~~ 505 (795)
+++.+.+.....+.++++.++.| +.|+||+|+|||||+|+|||...+..++|....- -.........++.-+|+.
T Consensus 6 ~~~~~~~~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~ 85 (345)
T COG1118 6 NNVKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQH 85 (345)
T ss_pred hhhhhhcccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcceeEEEec
Confidence 44555666666667888888888 8999999999999999999999888877765542 111122222334445555
Q ss_pred HHhcCCceeEhHHH
Q 003795 506 AKDNAPSVVFIDEL 519 (795)
Q Consensus 506 ar~~~p~Il~IDEI 519 (795)
.. ..|...+.|+|
T Consensus 86 YA-LF~HmtVa~NI 98 (345)
T COG1118 86 YA-LFPHMTVADNI 98 (345)
T ss_pred hh-hcccchHHhhh
Confidence 43 33445556666
No 251
>PRK08181 transposase; Validated
Probab=98.05 E-value=3.6e-06 Score=90.28 Aligned_cols=69 Identities=25% Similarity=0.372 Sum_probs=47.4
Q ss_pred CceEEECCCCCchhHHHHHhhhhc---cccEEEeeccceehhhhcc-chhhHHhHHHHHHhcCCceeEhHHHHHH
Q 003795 452 GGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEIYVGV-GASRVRSLYQEAKDNAPSVVFIDELDAV 522 (795)
Q Consensus 452 ~giLL~GPpGtGKTtLakaLA~el---~~~~~~is~se~~~~~~g~-~~~~l~~lf~~ar~~~p~Il~IDEID~l 522 (795)
.+++|+||+|||||+|+.+|+.++ +..++.++..++...+... ........+... ..+++++|||+...
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l--~~~dLLIIDDlg~~ 179 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKL--DKFDLLILDDLAYV 179 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHH--hcCCEEEEeccccc
Confidence 458999999999999999999754 6677788877766653211 111222334333 34679999999665
No 252
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.05 E-value=6.8e-06 Score=81.52 Aligned_cols=116 Identities=19% Similarity=0.101 Sum_probs=69.4
Q ss_pred ccccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeeccce--eh--------h---hhccchh--hHHh
Q 003795 439 HGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQF--VE--------I---YVGVGAS--RVRS 501 (795)
Q Consensus 439 ~~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~se~--~~--------~---~~g~~~~--~l~~ 501 (795)
+...+.++++.++.| +.|.||||+|||||+++|+|...+..+.+..... .. . |+.+-.. ..+-
T Consensus 12 ~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl 91 (163)
T cd03216 12 GVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMV 91 (163)
T ss_pred CeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHH
Confidence 334677888888888 8899999999999999999988766555443221 10 0 1111111 1123
Q ss_pred HHHHHHhcCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcccCCCcEEEEeccCCCCC
Q 003795 502 LYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDI 568 (795)
Q Consensus 502 lf~~ar~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVIatTN~~d~ 568 (795)
.+..+....|.++++||...-+ +...+..+..++..+. .. +..+|.+|++++.
T Consensus 92 ~laral~~~p~illlDEP~~~L----------D~~~~~~l~~~l~~~~---~~-~~tiii~sh~~~~ 144 (163)
T cd03216 92 EIARALARNARLLILDEPTAAL----------TPAEVERLFKVIRRLR---AQ-GVAVIFISHRLDE 144 (163)
T ss_pred HHHHHHhcCCCEEEEECCCcCC----------CHHHHHHHHHHHHHHH---HC-CCEEEEEeCCHHH
Confidence 4455566788999999974332 2233345555554443 22 3455556665543
No 253
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.04 E-value=1.8e-06 Score=89.05 Aligned_cols=49 Identities=24% Similarity=0.324 Sum_probs=39.4
Q ss_pred hccccccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeec
Q 003795 436 FFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (795)
Q Consensus 436 ~~~~~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (795)
.|.....+.++++.+..| +.|+||||+|||||+++|+|...+..+++..
T Consensus 9 ~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~ 59 (213)
T cd03259 9 TYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILI 59 (213)
T ss_pred EeCCeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE
Confidence 344445678888998887 8899999999999999999988766666543
No 254
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.02 E-value=6.7e-05 Score=87.49 Aligned_cols=68 Identities=25% Similarity=0.287 Sum_probs=44.1
Q ss_pred ccccCccccccCccCchHHHHHHHHHHHhccccccccccCcccCCceEEECCCCCchhHHHHHhhhhccccEEEe
Q 003795 408 YLERGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSI 482 (795)
Q Consensus 408 ~~~~~~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~i 482 (795)
+.++..+...+++.-..+.+.+++....... .+-...+-++|+||+||||||+++.||.+++..+.+.
T Consensus 9 W~~ky~P~~~~eLavhkkKv~eV~~wl~~~~-------~~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew 76 (519)
T PF03215_consen 9 WVEKYAPKTLDELAVHKKKVEEVRSWLEEMF-------SGSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEW 76 (519)
T ss_pred cchhcCCCCHHHhhccHHHHHHHHHHHHHHh-------ccCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEe
Confidence 3444556666666655555555555544211 1111112378899999999999999999998877764
No 255
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.01 E-value=2.7e-05 Score=89.36 Aligned_cols=176 Identities=23% Similarity=0.229 Sum_probs=103.4
Q ss_pred ceEEECCCCCchhHHHHHhhhhc---cccEEEeeccceehhh-----hccchhh-------HHhHHHHHHhcCCceeEhH
Q 003795 453 GILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEIY-----VGVGASR-------VRSLYQEAKDNAPSVVFID 517 (795)
Q Consensus 453 giLL~GPpGtGKTtLakaLA~el---~~~~~~is~se~~~~~-----~g~~~~~-------l~~lf~~ar~~~p~Il~ID 517 (795)
.++|+|++||||+++|+++.... +.+|+.++|+.+.... +|...+. ....++ ....+.+|||
T Consensus 164 ~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~---~a~~gtl~l~ 240 (445)
T TIGR02915 164 TVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLLESELFGYEKGAFTGAVKQTLGKIE---YAHGGTLFLD 240 (445)
T ss_pred CEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHHHHHhcCCCCCCcCCCccCCCCcee---ECCCCEEEEe
Confidence 48999999999999999997654 4689999998764321 1211100 001111 2235689999
Q ss_pred HHHHHhhhccCCCCCCcchHHHHHHHHHHhhhccc---------CCCcEEEEeccCCC-------CCCCccccCCCcccc
Q 003795 518 ELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE---------GRGNVITIASTNRP-------DILDPALVRPGRFDR 581 (795)
Q Consensus 518 EID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~---------~~~~VlVIatTN~~-------d~LdpaLlrpgRFd~ 581 (795)
||+.+... ....|+..++... ...++.+|++|+.. ..+.+.|.. |+.
T Consensus 241 ~i~~l~~~--------------~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~- 303 (445)
T TIGR02915 241 EIGDLPLN--------------LQAKLLRFLQERVIERLGGREEIPVDVRIVCATNQDLKRMIAEGTFREDLFY--RIA- 303 (445)
T ss_pred chhhCCHH--------------HHHHHHHHHhhCeEEeCCCCceeeeceEEEEecCCCHHHHHHcCCccHHHHH--Hhc-
Confidence 99998654 5666666665311 11357888888754 123333333 332
Q ss_pred eecCCCCCHHHHHH----HHHHHHccC----C----CCChhhHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCccCHH
Q 003795 582 KIFIPKPGLIGRME----ILKVHARKK----P----MADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTD 649 (795)
Q Consensus 582 ~I~~~~Pd~~eR~~----Il~~~l~~~----~----~~~d~dl~~LA~~t~G~sgadL~~lv~~A~~~A~~~~~~~It~e 649 (795)
.+.+..|...+|.+ ++++++... . .....-+..|..+.--.+.++|.+++..|+..+ ....|+.+
T Consensus 304 ~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNvreL~~~i~~a~~~~---~~~~i~~~ 380 (445)
T TIGR02915 304 EISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRALEAHAWPGNVRELENKVKRAVIMA---EGNQITAE 380 (445)
T ss_pred cceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC---CCCcccHH
Confidence 34555666666654 444444321 1 112233555666665567789999999887543 23456766
Q ss_pred HH
Q 003795 650 DL 651 (795)
Q Consensus 650 dl 651 (795)
++
T Consensus 381 ~l 382 (445)
T TIGR02915 381 DL 382 (445)
T ss_pred Hc
Confidence 65
No 256
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.97 E-value=5.5e-06 Score=81.34 Aligned_cols=114 Identities=24% Similarity=0.274 Sum_probs=67.6
Q ss_pred ccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeeccce--eh-------h---hh---ccchhhHHhHH
Q 003795 441 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQF--VE-------I---YV---GVGASRVRSLY 503 (795)
Q Consensus 441 ~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~se~--~~-------~---~~---g~~~~~l~~lf 503 (795)
..+...++.++.| ++|+||||+|||||+++|++.+.+..+++..... .. . |+ ..+.. .+-.+
T Consensus 13 ~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~~-~r~~l 91 (157)
T cd00267 13 TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQR-QRVAL 91 (157)
T ss_pred eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEeeCCHHHH-HHHHH
Confidence 4567778888876 8899999999999999999988776665554331 10 0 11 11111 12234
Q ss_pred HHHHhcCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcccCCCcEEEEeccCCCCCC
Q 003795 504 QEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDIL 569 (795)
Q Consensus 504 ~~ar~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVIatTN~~d~L 569 (795)
..+....|.++++||...-+. ...+..+..++..+. .. +..+|.+|+.++.+
T Consensus 92 ~~~l~~~~~i~ilDEp~~~lD----------~~~~~~l~~~l~~~~---~~-~~tii~~sh~~~~~ 143 (157)
T cd00267 92 ARALLLNPDLLLLDEPTSGLD----------PASRERLLELLRELA---EE-GRTVIIVTHDPELA 143 (157)
T ss_pred HHHHhcCCCEEEEeCCCcCCC----------HHHHHHHHHHHHHHH---HC-CCEEEEEeCCHHHH
Confidence 444455688999999754322 222334444444443 22 34556666665543
No 257
>PRK12377 putative replication protein; Provisional
Probab=97.96 E-value=5e-05 Score=80.65 Aligned_cols=69 Identities=19% Similarity=0.313 Sum_probs=45.8
Q ss_pred CceEEECCCCCchhHHHHHhhhhc---cccEEEeeccceehhhhccc--hhhHHhHHHHHHhcCCceeEhHHHHHH
Q 003795 452 GGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEIYVGVG--ASRVRSLYQEAKDNAPSVVFIDELDAV 522 (795)
Q Consensus 452 ~giLL~GPpGtGKTtLakaLA~el---~~~~~~is~se~~~~~~g~~--~~~l~~lf~~ar~~~p~Il~IDEID~l 522 (795)
.+++|+||||||||+|+.+|+..+ +..++.++..++.......- ......+++.. ...++|+|||+...
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l--~~~dLLiIDDlg~~ 175 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQEL--CKVDLLVLDEIGIQ 175 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCC
Confidence 469999999999999999999976 56677777777655421110 00112233333 34569999998543
No 258
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.96 E-value=1.1e-05 Score=78.35 Aligned_cols=81 Identities=25% Similarity=0.301 Sum_probs=53.9
Q ss_pred ccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeeccceehh-hhccchhh--HHhHHHHHHhcCCceeE
Q 003795 441 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEI-YVGVGASR--VRSLYQEAKDNAPSVVF 515 (795)
Q Consensus 441 ~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~se~~~~-~~g~~~~~--l~~lf~~ar~~~p~Il~ 515 (795)
..+..+++.+..| ++|.||||+|||||+++|++...+..+.+........ |+.+-... -+-.+..+....|.+++
T Consensus 14 ~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~lS~G~~~rv~laral~~~p~ill 93 (144)
T cd03221 14 LLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQLSGGEKMRLALAKLLLENPNLLL 93 (144)
T ss_pred eEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 4567778888877 8899999999999999999988777666654331111 21111111 12234445566788999
Q ss_pred hHHHHH
Q 003795 516 IDELDA 521 (795)
Q Consensus 516 IDEID~ 521 (795)
+||-..
T Consensus 94 lDEP~~ 99 (144)
T cd03221 94 LDEPTN 99 (144)
T ss_pred EeCCcc
Confidence 999744
No 259
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=97.96 E-value=2e-05 Score=79.00 Aligned_cols=49 Identities=20% Similarity=0.310 Sum_probs=42.0
Q ss_pred ccccccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeecc
Q 003795 437 FTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 485 (795)
Q Consensus 437 ~~~~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~s 485 (795)
-....+|.++++.+..| +.+.||||+|||||+|.|||.+.+..++|.+.
T Consensus 12 R~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~ 62 (209)
T COG4133 12 RGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQ 62 (209)
T ss_pred cCcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEec
Confidence 34556888899998888 88999999999999999999998888877655
No 260
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.95 E-value=3.4e-06 Score=86.60 Aligned_cols=45 Identities=36% Similarity=0.363 Sum_probs=37.6
Q ss_pred cccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeec
Q 003795 440 GEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (795)
Q Consensus 440 ~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (795)
...+.++++.+..| +.|.||||+|||||+++|+|...+..+.+..
T Consensus 13 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 59 (205)
T cd03226 13 TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILL 59 (205)
T ss_pred CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE
Confidence 44677888888887 8999999999999999999988776666543
No 261
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=97.95 E-value=5e-05 Score=87.77 Aligned_cols=179 Identities=18% Similarity=0.237 Sum_probs=106.3
Q ss_pred ceEEECCCCCchhHHHHHhhhhc---cccEEEeeccceehh-----hhccchhhH-------HhHHHHHHhcCCceeEhH
Q 003795 453 GILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEI-----YVGVGASRV-------RSLYQEAKDNAPSVVFID 517 (795)
Q Consensus 453 giLL~GPpGtGKTtLakaLA~el---~~~~~~is~se~~~~-----~~g~~~~~l-------~~lf~~ar~~~p~Il~ID 517 (795)
.++|.|++|||||++|++|.... +.+|+.++|+.+... .+|...+.. ...|+. ..++.+|||
T Consensus 163 ~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~~~~~lfg~~~g~~~~~~~~~~g~~~~---a~~Gtl~l~ 239 (469)
T PRK10923 163 SVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQ---ADGGTLFLD 239 (469)
T ss_pred eEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHHHHHHhcCCCCCCCCCCCcCCCCCeeE---CCCCEEEEe
Confidence 38999999999999999998765 468999999876432 122111100 011221 234579999
Q ss_pred HHHHHhhhccCCCCCCcchHHHHHHHHHHhhhccc---------CCCcEEEEeccCCC-------CCCCccccCCCcccc
Q 003795 518 ELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE---------GRGNVITIASTNRP-------DILDPALVRPGRFDR 581 (795)
Q Consensus 518 EID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~---------~~~~VlVIatTN~~-------d~LdpaLlrpgRFd~ 581 (795)
||+.+... ....|+..++... ...++-+|++|+.. ..+.+.|.. ||.
T Consensus 240 ~i~~l~~~--------------~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~- 302 (469)
T PRK10923 240 EIGDMPLD--------------VQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH--RLN- 302 (469)
T ss_pred ccccCCHH--------------HHHHHHHHHhcCcEEeCCCCCeEEeeEEEEEeCCCCHHHHHHcCCchHHHHH--Hhc-
Confidence 99988654 5556666555311 12356788888653 134444544 553
Q ss_pred eecCCCCCHHHHH----HHHHHHHccC----C----CCChhhHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCccCHH
Q 003795 582 KIFIPKPGLIGRM----EILKVHARKK----P----MADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTD 649 (795)
Q Consensus 582 ~I~~~~Pd~~eR~----~Il~~~l~~~----~----~~~d~dl~~LA~~t~G~sgadL~~lv~~A~~~A~~~~~~~It~e 649 (795)
.+.+..|...+|. .++++++... . ......+..|..+.---+.++|.++++.++..+ ....|+.+
T Consensus 303 ~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~i~~~~~~~---~~~~i~~~ 379 (469)
T PRK10923 303 VIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTCRWLTVMA---AGQEVLIQ 379 (469)
T ss_pred ceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC---CCCcccHH
Confidence 2444445444443 3555554321 1 112233566666666667789999999887544 34468888
Q ss_pred HHHHH
Q 003795 650 DLLQA 654 (795)
Q Consensus 650 dl~~A 654 (795)
|+-..
T Consensus 380 ~l~~~ 384 (469)
T PRK10923 380 DLPGE 384 (469)
T ss_pred HCcHh
Confidence 77533
No 262
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=97.95 E-value=3.8e-06 Score=86.55 Aligned_cols=48 Identities=27% Similarity=0.366 Sum_probs=38.3
Q ss_pred ccccccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeec
Q 003795 437 FTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (795)
Q Consensus 437 ~~~~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (795)
|.....+.++++.+..| ++|.||||+|||||+++|+|.+.+..+++..
T Consensus 10 ~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~ 59 (213)
T cd03301 10 FGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYI 59 (213)
T ss_pred ECCeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 33445678888888887 8899999999999999999988666665543
No 263
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.95 E-value=5.5e-06 Score=85.90 Aligned_cols=57 Identities=21% Similarity=0.322 Sum_probs=49.2
Q ss_pred HHHHHHHHHHhccccccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEe
Q 003795 426 IRLELEEIVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSI 482 (795)
Q Consensus 426 ~~~~l~~lv~~~~~~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~i 482 (795)
.+++++++.+.|++..++.++++++++| +.+.||+|+|||||+|.|.+.+.+.-+.+
T Consensus 7 ~~I~vr~v~~~fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI 65 (263)
T COG1127 7 PLIEVRGVTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEI 65 (263)
T ss_pred ceEEEeeeeeecCCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeE
Confidence 4556678888899999999999999999 78999999999999999999886655544
No 264
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.94 E-value=3.8e-05 Score=81.34 Aligned_cols=69 Identities=22% Similarity=0.420 Sum_probs=48.4
Q ss_pred CceEEECCCCCchhHHHHHhhhhc---cccEEEeeccceehhhhcc---chhhHHhHHHHHHhcCCceeEhHHHHHH
Q 003795 452 GGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEIYVGV---GASRVRSLYQEAKDNAPSVVFIDELDAV 522 (795)
Q Consensus 452 ~giLL~GPpGtGKTtLakaLA~el---~~~~~~is~se~~~~~~g~---~~~~l~~lf~~ar~~~p~Il~IDEID~l 522 (795)
.+++|+|++|||||+|+.+|+..+ +..+..++.+++.....+. .......+++... .+++|+|||+...
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~--~~dlLvIDDig~~ 174 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDLS--NVDLLVIDEIGVQ 174 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHhc--cCCEEEEeCCCCC
Confidence 369999999999999999999977 6677888887776543221 1111223444433 4679999999654
No 265
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=97.94 E-value=4.3e-05 Score=87.83 Aligned_cols=178 Identities=23% Similarity=0.279 Sum_probs=103.6
Q ss_pred ceEEECCCCCchhHHHHHhhhh---ccccEEEeeccceehh-----hhccchhhH-------HhHHHHHHhcCCceeEhH
Q 003795 453 GILLCGPPGVGKTLLAKAVAGE---AGVNFFSISASQFVEI-----YVGVGASRV-------RSLYQEAKDNAPSVVFID 517 (795)
Q Consensus 453 giLL~GPpGtGKTtLakaLA~e---l~~~~~~is~se~~~~-----~~g~~~~~l-------~~lf~~ar~~~p~Il~ID 517 (795)
.+++.|++||||+++++++... .+.+++.++|..+... .+|...... ...+. ....+++|||
T Consensus 168 ~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~---~a~~gtl~ld 244 (457)
T PRK11361 168 SVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLESELFGHEKGAFTGAQTLRQGLFE---RANEGTLLLD 244 (457)
T ss_pred EEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHHHHHhcCCCCCCCCCCCCCCCCceE---ECCCCEEEEe
Confidence 4899999999999999999664 3568999999876432 122111100 01122 1234689999
Q ss_pred HHHHHhhhccCCCCCCcchHHHHHHHHHHhhhccc---------CCCcEEEEeccCCCC-------CCCccccCCCcccc
Q 003795 518 ELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE---------GRGNVITIASTNRPD-------ILDPALVRPGRFDR 581 (795)
Q Consensus 518 EID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~---------~~~~VlVIatTN~~d-------~LdpaLlrpgRFd~ 581 (795)
||+.+... ....|+..++... ...++.+|++||..- .+.+.+.. |+.
T Consensus 245 ~i~~l~~~--------------~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~l~~~~~~g~~~~~l~~--~l~- 307 (457)
T PRK11361 245 EIGEMPLV--------------LQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVKEGTFREDLFY--RLN- 307 (457)
T ss_pred chhhCCHH--------------HHHHHHHHHhcCcEEeCCCCceeeeceEEEEeCCCCHHHHHHcCCchHHHHH--Hhc-
Confidence 99998654 5566666655311 113578888887531 22222322 222
Q ss_pred eecCCCCCHHHHHH----HHHHHHccC----C----CCChhhHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCccCHH
Q 003795 582 KIFIPKPGLIGRME----ILKVHARKK----P----MADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTD 649 (795)
Q Consensus 582 ~I~~~~Pd~~eR~~----Il~~~l~~~----~----~~~d~dl~~LA~~t~G~sgadL~~lv~~A~~~A~~~~~~~It~e 649 (795)
.+.+..|...+|.+ ++..++... . ......+..|..+.-..+.++|.+++..|+..+ ....|+.+
T Consensus 308 ~~~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~~~~~~~~~---~~~~i~~~ 384 (457)
T PRK11361 308 VIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSWPGNIRELSNVIERAVVMN---SGPIIFSE 384 (457)
T ss_pred cceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHcCCCCCcHHHHHHHHHHHHHhC---CCCcccHH
Confidence 34566666666543 333333221 1 112233455666655567789999998877543 34457777
Q ss_pred HHHH
Q 003795 650 DLLQ 653 (795)
Q Consensus 650 dl~~ 653 (795)
|+..
T Consensus 385 ~l~~ 388 (457)
T PRK11361 385 DLPP 388 (457)
T ss_pred HChH
Confidence 7653
No 266
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=97.94 E-value=3.4e-06 Score=87.28 Aligned_cols=45 Identities=20% Similarity=0.333 Sum_probs=38.2
Q ss_pred cccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeec
Q 003795 440 GEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (795)
Q Consensus 440 ~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (795)
...+.++++.++.| ++|+||||+|||||+++|+|.+.+..+.+..
T Consensus 17 ~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~ 63 (218)
T cd03255 17 VQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRV 63 (218)
T ss_pred eeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEE
Confidence 35678888999888 8899999999999999999998776666543
No 267
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=97.94 E-value=3.9e-05 Score=91.33 Aligned_cols=99 Identities=19% Similarity=0.277 Sum_probs=62.7
Q ss_pred cEEEEeccCCC--CCCCccccCCCccc---ceecCCC--C-CHHHHHHHHHHHHccCC---CCChhhHH---HHHh---h
Q 003795 556 NVITIASTNRP--DILDPALVRPGRFD---RKIFIPK--P-GLIGRMEILKVHARKKP---MADDVDYL---AVAS---M 618 (795)
Q Consensus 556 ~VlVIatTN~~--d~LdpaLlrpgRFd---~~I~~~~--P-d~~eR~~Il~~~l~~~~---~~~d~dl~---~LA~---~ 618 (795)
++.||+++|.. ..++|+|.. ||. ..+.|.. + +.+.+..+++...+... ....++-. .+.+ +
T Consensus 277 dvrvI~a~~~~ll~~~dpdL~~--rfk~~~v~v~f~~~~~d~~e~~~~~~~~iaqe~~~~G~l~~f~~eAVa~LI~~~~R 354 (637)
T PRK13765 277 DFIMVAAGNLDALENMHPALRS--RIKGYGYEVYMRDTMEDTPENRRKLVRFVAQEVKRDGKIPHFDRDAVEEIIREAKR 354 (637)
T ss_pred eeEEEEecCcCHHHhhhHHHHH--HhccCeEEEEcccccCCCHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHH
Confidence 56788888764 467899987 775 4555542 2 34455566654332211 11222322 2221 1
Q ss_pred CCC------CcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Q 003795 619 TDG------MVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQ 656 (795)
Q Consensus 619 t~G------~sgadL~~lv~~A~~~A~~~~~~~It~edl~~Al~ 656 (795)
..| ...++|..++++|...|...+...++.+|+..|+.
T Consensus 355 ~ag~r~~lsl~~~~l~~l~r~a~~~a~~~~~~~i~~~~v~~a~~ 398 (637)
T PRK13765 355 RAGRKGHLTLKLRDLGGLVRVAGDIARSEGAELTTAEHVLEAKK 398 (637)
T ss_pred HhCCccccccCHHHHHHHHHHHHHHHHhhccceecHHHHHHHHH
Confidence 122 34689999999999999999999999999998875
No 268
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=97.94 E-value=1.5e-05 Score=86.71 Aligned_cols=55 Identities=25% Similarity=0.265 Sum_probs=46.3
Q ss_pred HHHHHhcc-ccccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeecc
Q 003795 431 EEIVKFFT-HGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 485 (795)
Q Consensus 431 ~~lv~~~~-~~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~s 485 (795)
.++.+.|+ ....+.++++.++.| +.|.||||+|||||+++|++...+..+++...
T Consensus 8 ~~l~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~ 65 (293)
T COG1131 8 RNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVL 65 (293)
T ss_pred cceEEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEc
Confidence 45556677 577889999999988 88999999999999999999998877776544
No 269
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.93 E-value=1e-05 Score=80.71 Aligned_cols=43 Identities=23% Similarity=0.305 Sum_probs=35.1
Q ss_pred ccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEee
Q 003795 441 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 483 (795)
Q Consensus 441 ~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is 483 (795)
..+.++++.++.| ++|.||||+|||||+++|+|...+..+++.
T Consensus 16 ~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~ 60 (171)
T cd03228 16 PVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEIL 60 (171)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEE
Confidence 3567778888877 999999999999999999998766555443
No 270
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.92 E-value=3.2e-05 Score=76.21 Aligned_cols=55 Identities=24% Similarity=0.355 Sum_probs=44.5
Q ss_pred HHHHHHHhccccccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEee
Q 003795 429 ELEEIVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 483 (795)
Q Consensus 429 ~l~~lv~~~~~~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is 483 (795)
++.++...-.+..++.+.++.+.+| ++|+||+|||||||.|++|....+..+.+.
T Consensus 5 e~kq~~y~a~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~ 61 (223)
T COG4619 5 ELKQVGYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLL 61 (223)
T ss_pred HHHHHHhhcCCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEE
Confidence 4455555566777888889999888 999999999999999999998776665543
No 271
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=97.92 E-value=3.4e-05 Score=88.85 Aligned_cols=184 Identities=16% Similarity=0.191 Sum_probs=103.8
Q ss_pred ceEEECCCCCchhHHHHHhhhhc---cccEEEeeccceehh-----hhccchhhHHhHH----HHHHhcCCceeEhHHHH
Q 003795 453 GILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEI-----YVGVGASRVRSLY----QEAKDNAPSVVFIDELD 520 (795)
Q Consensus 453 giLL~GPpGtGKTtLakaLA~el---~~~~~~is~se~~~~-----~~g~~~~~l~~lf----~~ar~~~p~Il~IDEID 520 (795)
.+++.|.+||||+++++++.... +.+|+.++|+.+... .+|.....+.... .......++.+|||||+
T Consensus 159 ~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~ei~ 238 (463)
T TIGR01818 159 TVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIESELFGHEKGAFTGANTRRQGRFEQADGGTLFLDEIG 238 (463)
T ss_pred eEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHhcCCCCCCCCCcccCCCCcEEECCCCeEEEEchh
Confidence 48999999999999999997653 568999998876432 1221111000000 00112235689999999
Q ss_pred HHhhhccCCCCCCcchHHHHHHHHHHhhhccc---------CCCcEEEEeccCCCC-------CCCccccCCCccc-cee
Q 003795 521 AVGRERGLIKGSGGQERDATLNQLLVCLDGFE---------GRGNVITIASTNRPD-------ILDPALVRPGRFD-RKI 583 (795)
Q Consensus 521 ~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~---------~~~~VlVIatTN~~d-------~LdpaLlrpgRFd-~~I 583 (795)
.+... ....|+..++... ...++-+|++|+..- .+.+.|.. |+. ..|
T Consensus 239 ~l~~~--------------~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~f~~~L~~--rl~~~~i 302 (463)
T TIGR01818 239 DMPLD--------------AQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQNLEALVRQGKFREDLFH--RLNVIRI 302 (463)
T ss_pred hCCHH--------------HHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCCCCHHHHHHcCCcHHHHHH--HhCccee
Confidence 98654 4555555554311 113567887776531 22333333 333 245
Q ss_pred cCCCCC--HHHHHHHHHHHHccC----C----CCChhhHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHH
Q 003795 584 FIPKPG--LIGRMEILKVHARKK----P----MADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQ 653 (795)
Q Consensus 584 ~~~~Pd--~~eR~~Il~~~l~~~----~----~~~d~dl~~LA~~t~G~sgadL~~lv~~A~~~A~~~~~~~It~edl~~ 653 (795)
.+|+.. .++...++.+++... . ..+...+..|..+.---+.++|.+++..|+..+ ....|+.+|+..
T Consensus 303 ~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNvreL~~~~~~~~~~~---~~~~i~~~~l~~ 379 (463)
T TIGR01818 303 HLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALERLKQLRWPGNVRQLENLCRWLTVMA---SGDEVLVSDLPA 379 (463)
T ss_pred cCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC---CCCcccHHhchH
Confidence 555443 334445555554322 1 112233455555544445689999999887544 234688888765
Q ss_pred HH
Q 003795 654 AA 655 (795)
Q Consensus 654 Al 655 (795)
.+
T Consensus 380 ~~ 381 (463)
T TIGR01818 380 EL 381 (463)
T ss_pred HH
Confidence 44
No 272
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.90 E-value=4.9e-06 Score=85.62 Aligned_cols=45 Identities=24% Similarity=0.383 Sum_probs=37.1
Q ss_pred cccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeec
Q 003795 440 GEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (795)
Q Consensus 440 ~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (795)
...+.++++.++.| +.|.||||+|||||+++|+|...+.-+.+..
T Consensus 14 ~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 60 (211)
T cd03225 14 RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLV 60 (211)
T ss_pred eeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEE
Confidence 34677888888887 8899999999999999999988766665543
No 273
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.90 E-value=5.1e-06 Score=87.40 Aligned_cols=43 Identities=28% Similarity=0.388 Sum_probs=36.4
Q ss_pred ccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEee
Q 003795 441 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 483 (795)
Q Consensus 441 ~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is 483 (795)
..+.+.++.++.| ++|+||||+|||||++.++|.+.+..+.+.
T Consensus 18 ~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~ 62 (235)
T COG1122 18 AALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVL 62 (235)
T ss_pred eeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEE
Confidence 4566778888877 999999999999999999999887766653
No 274
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=97.89 E-value=1.6e-05 Score=79.82 Aligned_cols=57 Identities=33% Similarity=0.530 Sum_probs=45.8
Q ss_pred HHHHHHhcccc-ccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeeccc
Q 003795 430 LEEIVKFFTHG-EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQ 486 (795)
Q Consensus 430 l~~lv~~~~~~-~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~se 486 (795)
++++.+.|.+. ..+.++++.+++| ++++||+|+|||||+|.|.++..+.-+.+....
T Consensus 4 f~~V~k~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~ 63 (223)
T COG2884 4 FENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNG 63 (223)
T ss_pred ehhhhhhcCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECC
Confidence 45667777654 4788899999998 889999999999999999998877766655443
No 275
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.89 E-value=3.9e-06 Score=87.96 Aligned_cols=48 Identities=19% Similarity=0.345 Sum_probs=39.4
Q ss_pred ccccccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeec
Q 003795 437 FTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (795)
Q Consensus 437 ~~~~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (795)
|.....+.++++.+..| +.|+||||+|||||+++|+|...+..+.+..
T Consensus 10 ~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~ 59 (235)
T cd03261 10 FGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLI 59 (235)
T ss_pred ECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 33445678888998888 8999999999999999999988776666544
No 276
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.89 E-value=7e-06 Score=82.88 Aligned_cols=68 Identities=32% Similarity=0.522 Sum_probs=45.6
Q ss_pred CCceEEECCCCCchhHHHHHhhhhc---cccEEEeeccceehhhhcc-chhhHHhHHHHHHhcCCceeEhHHHH
Q 003795 451 PGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEIYVGV-GASRVRSLYQEAKDNAPSVVFIDELD 520 (795)
Q Consensus 451 ~~giLL~GPpGtGKTtLakaLA~el---~~~~~~is~se~~~~~~g~-~~~~l~~lf~~ar~~~p~Il~IDEID 520 (795)
..|++|+||+|+|||+||.+|+.++ +..+..++..++....-.. ........++... .+.+++|||+.
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~--~~dlLilDDlG 118 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLK--RVDLLILDDLG 118 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHH--TSSCEEEETCT
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCccc--cccEecccccc
Confidence 3569999999999999999999865 7778888888877653221 1122334454444 34689999983
No 277
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.88 E-value=1.4e-05 Score=82.22 Aligned_cols=47 Identities=26% Similarity=0.364 Sum_probs=37.6
Q ss_pred ccccccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEee
Q 003795 437 FTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 483 (795)
Q Consensus 437 ~~~~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is 483 (795)
|.+...+.++++.++.| ++|+||||+|||||+++|+|...+..+.+.
T Consensus 12 ~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~ 60 (207)
T PRK13539 12 RGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIK 60 (207)
T ss_pred ECCeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE
Confidence 33445678888888888 889999999999999999998766555543
No 278
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.88 E-value=2e-05 Score=78.87 Aligned_cols=42 Identities=29% Similarity=0.321 Sum_probs=35.0
Q ss_pred ccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEe
Q 003795 441 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSI 482 (795)
Q Consensus 441 ~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~i 482 (795)
..+..+++.+..| +.|+||||+|||||+++|++...+..+.+
T Consensus 14 ~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i 57 (173)
T cd03230 14 TALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEI 57 (173)
T ss_pred eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEE
Confidence 4677788888887 88999999999999999999876555544
No 279
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=97.88 E-value=1.2e-05 Score=80.63 Aligned_cols=43 Identities=23% Similarity=0.395 Sum_probs=35.5
Q ss_pred ccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEee
Q 003795 441 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 483 (795)
Q Consensus 441 ~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is 483 (795)
..+.++++.++.| ++|.||||+|||||+++|+|...+..+++.
T Consensus 16 ~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~ 60 (178)
T cd03247 16 QVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEIT 60 (178)
T ss_pred cceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEE
Confidence 3577788888887 889999999999999999998766555443
No 280
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=97.88 E-value=1.7e-05 Score=81.99 Aligned_cols=125 Identities=18% Similarity=0.216 Sum_probs=77.3
Q ss_pred HHHHHHhccccccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeecc--ceehh-----------hhcc
Q 003795 430 LEEIVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS--QFVEI-----------YVGV 494 (795)
Q Consensus 430 l~~lv~~~~~~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~s--e~~~~-----------~~g~ 494 (795)
++++..+|+....+..+++.++.| ++|+|+||+|||||+++|+|...+..++|... ++... |+.+
T Consensus 6 v~~l~~~YG~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~~VPe 85 (237)
T COG0410 6 VENLSAGYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIAYVPE 85 (237)
T ss_pred EEeEeecccceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeEeCcc
Confidence 445566788888889999999988 99999999999999999999988777766543 22211 3333
Q ss_pred chhhHH--hHHHHHH------hc-CCceeEhHHHHHHhhh------ccCCCCCCcchHHHHHHHHHHhhhcccCCCcEEE
Q 003795 495 GASRVR--SLYQEAK------DN-APSVVFIDELDAVGRE------RGLIKGSGGQERDATLNQLLVCLDGFEGRGNVIT 559 (795)
Q Consensus 495 ~~~~l~--~lf~~ar------~~-~p~Il~IDEID~l~~~------r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlV 559 (795)
+..-+. ++-++.. .. ...--.+|++..+++. +....-|||++.-..+...| ..++++++
T Consensus 86 gR~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRAL------m~~PklLL 159 (237)
T COG0410 86 GRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARAL------MSRPKLLL 159 (237)
T ss_pred cccchhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHH------hcCCCEEE
Confidence 332111 1111111 00 1111227777776553 11223388888766666655 45666666
Q ss_pred E
Q 003795 560 I 560 (795)
Q Consensus 560 I 560 (795)
+
T Consensus 160 L 160 (237)
T COG0410 160 L 160 (237)
T ss_pred e
Confidence 5
No 281
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=97.87 E-value=3.8e-06 Score=93.63 Aligned_cols=50 Identities=28% Similarity=0.337 Sum_probs=40.0
Q ss_pred hccccccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeecc
Q 003795 436 FFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 485 (795)
Q Consensus 436 ~~~~~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~s 485 (795)
.|.....+.++++.+..| ++|+||||+|||||+++|||...+..+.+...
T Consensus 15 ~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~ 66 (351)
T PRK11432 15 RFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFID 66 (351)
T ss_pred EECCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEEC
Confidence 344444677788888877 89999999999999999999988777766443
No 282
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=97.87 E-value=8.3e-06 Score=82.12 Aligned_cols=46 Identities=26% Similarity=0.315 Sum_probs=37.3
Q ss_pred ccccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeec
Q 003795 439 HGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (795)
Q Consensus 439 ~~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (795)
....+.++++.+..| ++|.||||+|||||+++|++...+.-+.+..
T Consensus 11 ~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~ 58 (180)
T cd03214 11 GRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILL 58 (180)
T ss_pred CeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE
Confidence 334677888888877 8899999999999999999988766555543
No 283
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=97.87 E-value=1.3e-05 Score=83.43 Aligned_cols=52 Identities=23% Similarity=0.305 Sum_probs=43.6
Q ss_pred HHHHHHHHHHhccccccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccc
Q 003795 426 IRLELEEIVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGV 477 (795)
Q Consensus 426 ~~~~l~~lv~~~~~~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~ 477 (795)
..+.++++...+....++.+++..+..| ..|+||||+|||||++.++++..+
T Consensus 30 ~li~l~~v~v~r~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~p 83 (257)
T COG1119 30 PLIELKNVSVRRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPP 83 (257)
T ss_pred ceEEecceEEEECCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCC
Confidence 3455666777777888899999999887 999999999999999999997643
No 284
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=97.87 E-value=2e-05 Score=78.39 Aligned_cols=43 Identities=30% Similarity=0.416 Sum_probs=35.3
Q ss_pred ccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEee
Q 003795 441 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 483 (795)
Q Consensus 441 ~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is 483 (795)
..+.++++.+..| ++|.||||+|||||+++|++...+..+++.
T Consensus 15 ~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~ 59 (166)
T cd03223 15 VLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIG 59 (166)
T ss_pred eeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEE
Confidence 3567788888877 899999999999999999998766555443
No 285
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.86 E-value=1.7e-05 Score=85.20 Aligned_cols=54 Identities=19% Similarity=0.182 Sum_probs=45.6
Q ss_pred HHHHHHhccccccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEee
Q 003795 430 LEEIVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 483 (795)
Q Consensus 430 l~~lv~~~~~~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is 483 (795)
..++...|+....+.++++.+..| ++|+||||+|||||+++|+|...+..+.+.
T Consensus 27 ~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~ 82 (269)
T cd03294 27 KEEILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVL 82 (269)
T ss_pred hhhhhhhcCCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEE
Confidence 456777788777889999999988 889999999999999999998876666544
No 286
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=97.85 E-value=4.4e-05 Score=79.70 Aligned_cols=57 Identities=21% Similarity=0.185 Sum_probs=48.7
Q ss_pred HHHHHHHHhccccccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeec
Q 003795 428 LELEEIVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (795)
Q Consensus 428 ~~l~~lv~~~~~~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (795)
+.++.+...|.....+.++++.+..| +.|.||||+|||||+++|+|...+..+.+..
T Consensus 23 l~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~ 81 (224)
T cd03220 23 LGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTV 81 (224)
T ss_pred hhhhhhhhhcCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 56677777888888999999999988 8899999999999999999988776666654
No 287
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=97.84 E-value=5.9e-06 Score=90.42 Aligned_cols=54 Identities=24% Similarity=0.266 Sum_probs=43.5
Q ss_pred HHHHHhccccccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeec
Q 003795 431 EEIVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (795)
Q Consensus 431 ~~lv~~~~~~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (795)
+++.+.|++...++++++.++.| +.|+||||+|||||+++|+|.+.+.-+.+..
T Consensus 11 ~~l~k~~~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i 66 (306)
T PRK13537 11 RNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISL 66 (306)
T ss_pred EeEEEEECCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE
Confidence 44445555556788899999888 8999999999999999999998777666544
No 288
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=97.84 E-value=1.5e-05 Score=82.01 Aligned_cols=159 Identities=25% Similarity=0.279 Sum_probs=82.6
Q ss_pred ceEEECCCCCchhHHHHHhhhhccc---cEEEeec-cceeh----hh-------------hc-----------------c
Q 003795 453 GILLCGPPGVGKTLLAKAVAGEAGV---NFFSISA-SQFVE----IY-------------VG-----------------V 494 (795)
Q Consensus 453 giLL~GPpGtGKTtLakaLA~el~~---~~~~is~-se~~~----~~-------------~g-----------------~ 494 (795)
.++|+||.|+|||+|++.+...+.. ..+.+.. ..... .. .+ .
T Consensus 22 ~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 101 (234)
T PF01637_consen 22 HILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFIEETSLADELSEALGISIPSITLEKISKDLSED 101 (234)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHHHHHHHHCHCHHHHHHHCCTSTTEEEECTS-GG
T ss_pred EEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHHHHHHHHHHHHHHHhhhcccccchhhhhcchhh
Confidence 4899999999999999999987732 1111111 11000 00 00 0
Q ss_pred chhhHHhHHHHHHhcC-CceeEhHHHHHHh-hhccCCCCCCcchHHHHHHHHHHhhhcccCCCcEEEEeccCCCC-----
Q 003795 495 GASRVRSLYQEAKDNA-PSVVFIDELDAVG-RERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPD----- 567 (795)
Q Consensus 495 ~~~~l~~lf~~ar~~~-p~Il~IDEID~l~-~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVIatTN~~d----- 567 (795)
....+..+++.+.... ..+++|||++.+. ... .....+..|...++......++.+|.++....
T Consensus 102 ~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~---------~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~~~~~~~~ 172 (234)
T PF01637_consen 102 SFSALERLLEKLKKKGKKVIIVIDEFQYLAIASE---------EDKDFLKSLRSLLDSLLSQQNVSIVITGSSDSLMEEF 172 (234)
T ss_dssp -G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTT---------TTHHHHHHHHHHHHH----TTEEEEEEESSHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCCcEEEEEecHHHHhhccc---------chHHHHHHHHHHHhhccccCCceEEEECCchHHHHHh
Confidence 1122344555554432 3689999999987 211 11235556666666544455555543332211
Q ss_pred -CCCccccCCCcccceecCCCCCHHHHHHHHHHHHccCC-C-CChhhHHHHHhhCCCCc
Q 003795 568 -ILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKP-M-ADDVDYLAVASMTDGMV 623 (795)
Q Consensus 568 -~LdpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~~-~-~~d~dl~~LA~~t~G~s 623 (795)
.-...+.. |+.. +.+++.+.++..+++...+.... + .++.++..+...+.|..
T Consensus 173 ~~~~~~~~~--~~~~-~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gG~P 228 (234)
T PF01637_consen 173 LDDKSPLFG--RFSH-IELKPLSKEEAREFLKELFKELIKLPFSDEDIEEIYSLTGGNP 228 (234)
T ss_dssp T-TTSTTTT-----E-EEE----HHHHHHHHHHHHHCC------HHHHHHHHHHHTT-H
T ss_pred hcccCcccc--ccce-EEEeeCCHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCH
Confidence 12233433 7776 99999999999999998876651 1 25667777777777643
No 289
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.84 E-value=1.8e-05 Score=81.52 Aligned_cols=48 Identities=21% Similarity=0.208 Sum_probs=38.7
Q ss_pred ccccccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeec
Q 003795 437 FTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (795)
Q Consensus 437 ~~~~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (795)
|.....+.++++.+..| ++|+||||+|||||+++|+|...+..+++..
T Consensus 10 ~~~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 59 (210)
T cd03269 10 FGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLF 59 (210)
T ss_pred ECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 33345677888888887 8899999999999999999988776666654
No 290
>PRK15115 response regulator GlrR; Provisional
Probab=97.83 E-value=7.1e-05 Score=85.83 Aligned_cols=178 Identities=21% Similarity=0.269 Sum_probs=105.0
Q ss_pred ceEEECCCCCchhHHHHHhhhhc---cccEEEeeccceehhh-----hccchhhH-------HhHHHHHHhcCCceeEhH
Q 003795 453 GILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEIY-----VGVGASRV-------RSLYQEAKDNAPSVVFID 517 (795)
Q Consensus 453 giLL~GPpGtGKTtLakaLA~el---~~~~~~is~se~~~~~-----~g~~~~~l-------~~lf~~ar~~~p~Il~ID 517 (795)
.++|+|++|+|||++|+++.... +.+|+.++|+.+.... +|...+.. ..+++ ....+.+|||
T Consensus 159 ~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~---~a~~gtl~l~ 235 (444)
T PRK15115 159 SVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQ---AAEGGTLFLD 235 (444)
T ss_pred eEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHHHHHhcCCCcCCCCCCccCCCCcEE---ECCCCEEEEE
Confidence 38999999999999999997754 5789999998754321 11111000 01121 2234689999
Q ss_pred HHHHHhhhccCCCCCCcchHHHHHHHHHHhhhccc---------CCCcEEEEeccCCCCCCCccccCCCcccc-------
Q 003795 518 ELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE---------GRGNVITIASTNRPDILDPALVRPGRFDR------- 581 (795)
Q Consensus 518 EID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~---------~~~~VlVIatTN~~d~LdpaLlrpgRFd~------- 581 (795)
||+.+... ....|+..++... ...++.+|++|+.. ++ .+...|+|..
T Consensus 236 ~i~~l~~~--------------~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~--l~-~~~~~~~f~~~l~~~l~ 298 (444)
T PRK15115 236 EIGDMPAP--------------LQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRD--LP-KAMARGEFREDLYYRLN 298 (444)
T ss_pred ccccCCHH--------------HHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCC--HH-HHHHcCCccHHHHHhhc
Confidence 99998654 5556666555311 11267888888752 22 2223344421
Q ss_pred eecCCCCCHHHHHH----HHHHHHccC----C--C--CChhhHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCccCHH
Q 003795 582 KIFIPKPGLIGRME----ILKVHARKK----P--M--ADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTD 649 (795)
Q Consensus 582 ~I~~~~Pd~~eR~~----Il~~~l~~~----~--~--~~d~dl~~LA~~t~G~sgadL~~lv~~A~~~A~~~~~~~It~e 649 (795)
.+.+..|...+|.+ ++++++... . . .++.-+..|..+.-.-+.++|.++++.|+..+ ....|+.+
T Consensus 299 ~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~WpgNvreL~~~i~~~~~~~---~~~~i~~~ 375 (444)
T PRK15115 299 VVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCVALT---SSPVISDA 375 (444)
T ss_pred eeeecCCChHhccccHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC---CCCccChh
Confidence 34555666777643 334444321 1 1 22334566666665667889999998877532 34457777
Q ss_pred HHHH
Q 003795 650 DLLQ 653 (795)
Q Consensus 650 dl~~ 653 (795)
++..
T Consensus 376 ~l~~ 379 (444)
T PRK15115 376 LVEQ 379 (444)
T ss_pred hhhh
Confidence 7654
No 291
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=97.83 E-value=5e-06 Score=92.87 Aligned_cols=46 Identities=28% Similarity=0.457 Sum_probs=38.1
Q ss_pred cccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeecc
Q 003795 440 GEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 485 (795)
Q Consensus 440 ~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~s 485 (795)
...+.++++.++.| +.|+||||+|||||+++|||...+..+.+...
T Consensus 17 ~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~ 64 (356)
T PRK11650 17 TQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIG 64 (356)
T ss_pred CEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEEC
Confidence 34667788888877 88999999999999999999887777766543
No 292
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=97.83 E-value=1.6e-05 Score=86.76 Aligned_cols=47 Identities=15% Similarity=0.123 Sum_probs=38.8
Q ss_pred cccccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeec
Q 003795 438 THGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (795)
Q Consensus 438 ~~~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (795)
+....+.++++.++.| +.|+||||+|||||+++|+|.+.+..+.+..
T Consensus 4 ~~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~ 52 (302)
T TIGR01188 4 GDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARV 52 (302)
T ss_pred CCeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 3445677888898888 8899999999999999999988777666554
No 293
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=97.82 E-value=1.3e-05 Score=83.39 Aligned_cols=44 Identities=27% Similarity=0.321 Sum_probs=37.5
Q ss_pred cccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeecc
Q 003795 442 MYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 485 (795)
Q Consensus 442 ~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~s 485 (795)
.++++++.+..| +.|+|++|||||||+++|+|...+..+.|...
T Consensus 22 ~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~ 67 (252)
T COG1124 22 ALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLD 67 (252)
T ss_pred hhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEEC
Confidence 667788888888 88999999999999999999887777666544
No 294
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=97.82 E-value=6.2e-06 Score=86.16 Aligned_cols=47 Identities=21% Similarity=0.277 Sum_probs=37.7
Q ss_pred ccccccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEee
Q 003795 437 FTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 483 (795)
Q Consensus 437 ~~~~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is 483 (795)
|.....+.++++.+..| +.|+||||+|||||+++|+|...+.-+.+.
T Consensus 10 ~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~ 58 (232)
T cd03218 10 YGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKIL 58 (232)
T ss_pred eCCEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE
Confidence 33445677888888877 889999999999999999998766655543
No 295
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.81 E-value=0.00011 Score=70.95 Aligned_cols=72 Identities=26% Similarity=0.354 Sum_probs=45.2
Q ss_pred eEEECCCCCchhHHHHHhhhhc---cccEEEeeccceehhh----------------------hccc-hhhH-HhHHHHH
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEIY----------------------VGVG-ASRV-RSLYQEA 506 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el---~~~~~~is~se~~~~~----------------------~g~~-~~~l-~~lf~~a 506 (795)
++|+||||+|||+++..+++.. +.+.+.++........ .... .... ......+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 5899999999999999999876 4556666554332210 0000 0000 1123444
Q ss_pred HhcCCceeEhHHHHHHhhh
Q 003795 507 KDNAPSVVFIDELDAVGRE 525 (795)
Q Consensus 507 r~~~p~Il~IDEID~l~~~ 525 (795)
....|.+++|||+..+...
T Consensus 82 ~~~~~~~lviDe~~~~~~~ 100 (165)
T cd01120 82 ERGGDDLIILDELTRLVRA 100 (165)
T ss_pred hCCCCEEEEEEcHHHHHHH
Confidence 5567889999999988643
No 296
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=97.81 E-value=6.7e-06 Score=89.83 Aligned_cols=52 Identities=23% Similarity=0.330 Sum_probs=41.4
Q ss_pred HHHhccccccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeec
Q 003795 433 IVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (795)
Q Consensus 433 lv~~~~~~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (795)
+...|.+...+.++++.++.| +.|+||||+|||||+++|+|...+..+.+..
T Consensus 10 l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~ 63 (303)
T TIGR01288 10 VSKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITV 63 (303)
T ss_pred EEEEeCCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 333444555778889999888 8999999999999999999988776666543
No 297
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=97.81 E-value=4.5e-05 Score=81.47 Aligned_cols=49 Identities=22% Similarity=0.375 Sum_probs=39.3
Q ss_pred hccccccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeec
Q 003795 436 FFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (795)
Q Consensus 436 ~~~~~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (795)
.|.....+.++++.+..| ++|+||||+|||||+++|+|...+..+.+..
T Consensus 21 ~~~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~ 71 (257)
T PRK11247 21 RYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLA 71 (257)
T ss_pred EECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEE
Confidence 343445678888888887 8999999999999999999988776666543
No 298
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=97.80 E-value=2.3e-05 Score=80.96 Aligned_cols=44 Identities=23% Similarity=0.292 Sum_probs=37.2
Q ss_pred ccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeec
Q 003795 441 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (795)
Q Consensus 441 ~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (795)
..+.++++.++.| +.|+||||+|||||+++|+|...+..+.+..
T Consensus 17 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~ 62 (216)
T TIGR00960 17 PALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRF 62 (216)
T ss_pred eEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 3677888888887 8899999999999999999988776666544
No 299
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.80 E-value=2.1e-05 Score=83.84 Aligned_cols=69 Identities=30% Similarity=0.512 Sum_probs=46.4
Q ss_pred CCceEEECCCCCchhHHHHHhhhhc---cccEEEeeccceehhhhccch-hhHH-hHHHHHHhcCCceeEhHHHHH
Q 003795 451 PGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEIYVGVGA-SRVR-SLYQEAKDNAPSVVFIDELDA 521 (795)
Q Consensus 451 ~~giLL~GPpGtGKTtLakaLA~el---~~~~~~is~se~~~~~~g~~~-~~l~-~lf~~ar~~~p~Il~IDEID~ 521 (795)
..+++|+||||||||+|+-+|+.++ |..+..++..+++...-.... +... .+.... ...++++|||+-.
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~l--~~~dlLIiDDlG~ 178 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLREL--KKVDLLIIDDIGY 178 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHHh--hcCCEEEEecccC
Confidence 4569999999999999999999976 677888888887665221111 1111 112112 3456999999844
No 300
>PF05729 NACHT: NACHT domain
Probab=97.80 E-value=0.00011 Score=71.40 Aligned_cols=140 Identities=16% Similarity=0.157 Sum_probs=71.0
Q ss_pred eEEECCCCCchhHHHHHhhhhcc---------ccEEEeeccceehh------------hhccchhhHHhHH-HHHHhcCC
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEAG---------VNFFSISASQFVEI------------YVGVGASRVRSLY-QEAKDNAP 511 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el~---------~~~~~is~se~~~~------------~~g~~~~~l~~lf-~~ar~~~p 511 (795)
++|+|++|+|||++++.++..+. ...+.+.+.+.... ........+...+ ........
T Consensus 3 l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 82 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNKR 82 (166)
T ss_pred EEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCCc
Confidence 78999999999999999987541 11223333332211 0001111111111 22234456
Q ss_pred ceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhc-ccCCCcEEEEeccCCCCCCCccccCCCcccceecCCCCCH
Q 003795 512 SVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDG-FEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGL 590 (795)
Q Consensus 512 ~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~-~~~~~~VlVIatTN~~d~LdpaLlrpgRFd~~I~~~~Pd~ 590 (795)
.+++||.+|.+...... ++.......+..++ .. ...+..++|.+.+.....+...+.. ...+.+++.+.
T Consensus 83 ~llilDglDE~~~~~~~---~~~~~~~~~l~~l~---~~~~~~~~~liit~r~~~~~~~~~~~~~----~~~~~l~~~~~ 152 (166)
T PF05729_consen 83 VLLILDGLDELEEQDQS---QERQRLLDLLSQLL---PQALPPGVKLIITSRPRAFPDLRRRLKQ----AQILELEPFSE 152 (166)
T ss_pred eEEEEechHhcccchhh---hHHHHHHHHHHHHh---hhccCCCCeEEEEEcCChHHHHHHhcCC----CcEEEECCCCH
Confidence 68999999998653210 00111112233333 32 1222333333333222223222222 14688899999
Q ss_pred HHHHHHHHHHHcc
Q 003795 591 IGRMEILKVHARK 603 (795)
Q Consensus 591 ~eR~~Il~~~l~~ 603 (795)
++..++++.+++.
T Consensus 153 ~~~~~~~~~~f~~ 165 (166)
T PF05729_consen 153 EDIKQYLRKYFSN 165 (166)
T ss_pred HHHHHHHHHHhhc
Confidence 9999999988753
No 301
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=97.80 E-value=3.9e-05 Score=76.73 Aligned_cols=42 Identities=26% Similarity=0.411 Sum_probs=34.9
Q ss_pred cccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEee
Q 003795 442 MYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 483 (795)
Q Consensus 442 ~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is 483 (795)
.+...++.++.| +.|.||||+|||||+++|++...+..+.+.
T Consensus 17 ~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~ 60 (173)
T cd03246 17 VLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVR 60 (173)
T ss_pred ceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEE
Confidence 567778888877 889999999999999999998766555443
No 302
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=97.80 E-value=1e-05 Score=83.47 Aligned_cols=45 Identities=27% Similarity=0.357 Sum_probs=37.3
Q ss_pred cccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeec
Q 003795 440 GEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (795)
Q Consensus 440 ~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (795)
...+.++++.+..| +.|+||||+|||||+++|+|...+..+++..
T Consensus 15 ~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~ 61 (214)
T TIGR02673 15 VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRI 61 (214)
T ss_pred ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEE
Confidence 34677888888888 8899999999999999999988766666543
No 303
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.79 E-value=7.5e-06 Score=86.11 Aligned_cols=49 Identities=31% Similarity=0.375 Sum_probs=39.4
Q ss_pred hccccccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeec
Q 003795 436 FFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (795)
Q Consensus 436 ~~~~~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (795)
.|.+...+.++++.+..| ++|.||||+|||||+++|+|...+..+.+..
T Consensus 11 ~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~ 61 (239)
T cd03296 11 RFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILF 61 (239)
T ss_pred EECCEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 344445678888888887 8899999999999999999988766665543
No 304
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.78 E-value=1.6e-05 Score=87.69 Aligned_cols=69 Identities=25% Similarity=0.449 Sum_probs=46.5
Q ss_pred CceEEECCCCCchhHHHHHhhhhc---cccEEEeeccceehhhhcc---chhhHHhHHHHHHhcCCceeEhHHHHHH
Q 003795 452 GGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEIYVGV---GASRVRSLYQEAKDNAPSVVFIDELDAV 522 (795)
Q Consensus 452 ~giLL~GPpGtGKTtLakaLA~el---~~~~~~is~se~~~~~~g~---~~~~l~~lf~~ar~~~p~Il~IDEID~l 522 (795)
.+++|+||+|||||+|+.+||.++ +..++.++..++....... ........++... ..++|+||++...
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~--~~DLLIIDDlG~e 258 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLLI--NCDLLIIDDLGTE 258 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHhc--cCCEEEEeccCCC
Confidence 569999999999999999999976 6678888887766543211 0011111133322 3469999998544
No 305
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=97.78 E-value=2.5e-05 Score=79.09 Aligned_cols=54 Identities=20% Similarity=0.191 Sum_probs=38.9
Q ss_pred HHHHhccccc-cccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeecc
Q 003795 432 EIVKFFTHGE-MYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 485 (795)
Q Consensus 432 ~lv~~~~~~~-~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~s 485 (795)
++.+.|+... ..+++++....| +.|.||||+||||++|.||..+.+..+.+...
T Consensus 6 ~l~K~y~~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~id 62 (245)
T COG4555 6 DLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTID 62 (245)
T ss_pred ehhhhccCHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEe
Confidence 3444444433 345566667766 78999999999999999999998776665443
No 306
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=97.77 E-value=2.3e-05 Score=82.35 Aligned_cols=50 Identities=22% Similarity=0.280 Sum_probs=40.9
Q ss_pred HhccccccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeec
Q 003795 435 KFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (795)
Q Consensus 435 ~~~~~~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (795)
..+.....+.++++.++.| ++|.||||+|||||+++|+|...+..+.+..
T Consensus 29 ~~~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~ 80 (236)
T cd03267 29 RKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRV 80 (236)
T ss_pred cccCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEE
Confidence 4455566888899999888 8899999999999999999988766665543
No 307
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.77 E-value=2.5e-05 Score=85.47 Aligned_cols=69 Identities=28% Similarity=0.432 Sum_probs=47.2
Q ss_pred CCceEEECCCCCchhHHHHHhhhhc---cccEEEeeccceehhhhcc-chhhHHhHHHHHHhcCCceeEhHHHHH
Q 003795 451 PGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEIYVGV-GASRVRSLYQEAKDNAPSVVFIDELDA 521 (795)
Q Consensus 451 ~~giLL~GPpGtGKTtLakaLA~el---~~~~~~is~se~~~~~~g~-~~~~l~~lf~~ar~~~p~Il~IDEID~ 521 (795)
..|++|+||+|||||+|+.+||.++ +..+..+.+.++....... ....+...++... ...+|+|||+..
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l~--~~dlLiIDDiG~ 228 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAVK--EAPVLMLDDIGA 228 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHhc--CCCEEEEecCCC
Confidence 4679999999999999999999987 6677777777765542211 1112233444433 356999999843
No 308
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=97.77 E-value=2.4e-05 Score=80.46 Aligned_cols=48 Identities=21% Similarity=0.277 Sum_probs=38.7
Q ss_pred ccccccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeec
Q 003795 437 FTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (795)
Q Consensus 437 ~~~~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (795)
|.+...+.++++.+..| ++|.||||+|||||+++|+|...+..+.+..
T Consensus 10 ~~~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~ 59 (208)
T cd03268 10 YGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITF 59 (208)
T ss_pred ECCeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEE
Confidence 33445677888888877 8899999999999999999988766665544
No 309
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=97.76 E-value=7.9e-05 Score=79.12 Aligned_cols=121 Identities=12% Similarity=0.114 Sum_probs=79.5
Q ss_pred ccCCceEEECCCCCchhHHHHHhhhhccccEEEeeccc------e-----ehhhh------ccchhhHHhHHHHHHh---
Q 003795 449 RIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQ------F-----VEIYV------GVGASRVRSLYQEAKD--- 508 (795)
Q Consensus 449 ~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~se------~-----~~~~~------g~~~~~l~~lf~~ar~--- 508 (795)
.+|.++||+||.|+||..+|.++|..+-+.-..-.|+. + -+.++ .-....++.+.+....
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~ 84 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSV 84 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCch
Confidence 34667999999999999999999875522100000110 0 00000 0111233444443321
Q ss_pred --cCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcccCCCcEEEEeccCCCCCCCccccCCCcccceecCC
Q 003795 509 --NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIP 586 (795)
Q Consensus 509 --~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVIatTN~~d~LdpaLlrpgRFd~~I~~~ 586 (795)
....|++|+++|.+... ..|.||..++ .+..++++|..|+.++.+.|.+++ |.. .+.|+
T Consensus 85 e~~~~KV~II~~ae~m~~~--------------AaNaLLK~LE--EPp~~t~fiLit~~~~~lLpTI~S--RCq-~~~~~ 145 (261)
T PRK05818 85 ESNGKKIYIIYGIEKLNKQ--------------SANSLLKLIE--EPPKNTYGIFTTRNENNILNTILS--RCV-QYVVL 145 (261)
T ss_pred hcCCCEEEEeccHhhhCHH--------------HHHHHHHhhc--CCCCCeEEEEEECChHhCchHhhh--hee-eeecC
Confidence 23568999999998655 7899999999 677889999999999999999999 654 45566
Q ss_pred CC
Q 003795 587 KP 588 (795)
Q Consensus 587 ~P 588 (795)
.+
T Consensus 146 ~~ 147 (261)
T PRK05818 146 SK 147 (261)
T ss_pred Ch
Confidence 55
No 310
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=97.76 E-value=2.7e-05 Score=93.63 Aligned_cols=52 Identities=19% Similarity=0.124 Sum_probs=43.0
Q ss_pred HHHhccccccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeec
Q 003795 433 IVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (795)
Q Consensus 433 lv~~~~~~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (795)
+...|+...++.++++.+..| +.|+||||+|||||+++|+|...+..+.|..
T Consensus 7 ls~~~g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~ 60 (638)
T PRK10636 7 LQIRRGVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTF 60 (638)
T ss_pred EEEEeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEe
Confidence 344566667888999999988 9999999999999999999988776666654
No 311
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=97.76 E-value=1.8e-05 Score=88.90 Aligned_cols=49 Identities=20% Similarity=0.380 Sum_probs=39.2
Q ss_pred hccccccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeec
Q 003795 436 FFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (795)
Q Consensus 436 ~~~~~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (795)
.|.+...+.++++.++.| +.|+||||+|||||+++|+|...+..+.+..
T Consensus 12 ~~~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~ 62 (369)
T PRK11000 12 AYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFI 62 (369)
T ss_pred EeCCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEE
Confidence 344445677888888877 8999999999999999999988776666543
No 312
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=97.76 E-value=0.00018 Score=77.97 Aligned_cols=128 Identities=18% Similarity=0.261 Sum_probs=83.1
Q ss_pred ccCCceEEECCCCCchhHHHHHhhhhcccc-------EEEe------eccceehh-hh---cc--chhhHHhHHHHHHh-
Q 003795 449 RIPGGILLCGPPGVGKTLLAKAVAGEAGVN-------FFSI------SASQFVEI-YV---GV--GASRVRSLYQEAKD- 508 (795)
Q Consensus 449 ~i~~giLL~GPpGtGKTtLakaLA~el~~~-------~~~i------s~se~~~~-~~---g~--~~~~l~~lf~~ar~- 508 (795)
+++.++||+|| +||+++|+.+|..+-.. .+.. ..+..-+. ++ |. ....++.+.+.+..
T Consensus 22 rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~I~idqIR~l~~~~~~~ 99 (290)
T PRK07276 22 RLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQVIKTDTIRELVKNFSQS 99 (290)
T ss_pred CcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCcCCHHHHHHHHHHHhhC
Confidence 56777999996 68999999998754221 1110 00000000 01 11 12345555555433
Q ss_pred ---cCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcccCCCcEEEEeccCCCCCCCccccCCCcccceecC
Q 003795 509 ---NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFI 585 (795)
Q Consensus 509 ---~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVIatTN~~d~LdpaLlrpgRFd~~I~~ 585 (795)
....|++||++|.+... ..|.||..++ .+..++++|..|+.++.+.|.+++ |.. .|.|
T Consensus 100 p~~~~~kV~II~~ad~m~~~--------------AaNaLLKtLE--EPp~~t~~iL~t~~~~~lLpTI~S--Rcq-~i~f 160 (290)
T PRK07276 100 GYEGKQQVFIIKDADKMHVN--------------AANSLLKVIE--EPQSEIYIFLLTNDENKVLPTIKS--RTQ-IFHF 160 (290)
T ss_pred cccCCcEEEEeehhhhcCHH--------------HHHHHHHHhc--CCCCCeEEEEEECChhhCchHHHH--cce-eeeC
Confidence 23468999999998655 7899999999 667778999999889999999999 553 7778
Q ss_pred CCCCHHHHHHHHH
Q 003795 586 PKPGLIGRMEILK 598 (795)
Q Consensus 586 ~~Pd~~eR~~Il~ 598 (795)
+. +.+...+++.
T Consensus 161 ~~-~~~~~~~~L~ 172 (290)
T PRK07276 161 PK-NEAYLIQLLE 172 (290)
T ss_pred CC-cHHHHHHHHH
Confidence 65 5555555554
No 313
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.75 E-value=1.7e-05 Score=82.08 Aligned_cols=55 Identities=22% Similarity=0.285 Sum_probs=42.2
Q ss_pred HHHHHhccccccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeecc
Q 003795 431 EEIVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 485 (795)
Q Consensus 431 ~~lv~~~~~~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~s 485 (795)
+++...+.+...+.++++.+..| +.|.||||+|||||+++|+|...+..+.+...
T Consensus 15 ~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~ 71 (214)
T PRK13543 15 HALAFSRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQID 71 (214)
T ss_pred eeEEEecCCceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEEC
Confidence 33434444445778888999887 88999999999999999999887666655443
No 314
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=97.75 E-value=5.3e-05 Score=91.33 Aligned_cols=134 Identities=20% Similarity=0.221 Sum_probs=86.2
Q ss_pred HHHHHHHHhccc--cccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeeccceehh------------h
Q 003795 428 LELEEIVKFFTH--GEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEI------------Y 491 (795)
Q Consensus 428 ~~l~~lv~~~~~--~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~se~~~~------------~ 491 (795)
..++++...|.. +..+.++++.++.| +.++|++|||||||+|.|.|...+..+.+..+..--. |
T Consensus 472 I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~ 551 (709)
T COG2274 472 IEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGY 551 (709)
T ss_pred EEEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeE
Confidence 344555555543 35788899999999 9999999999999999999998887777655443211 2
Q ss_pred hccchhhH-HhHHHHHHhcCCceeEhHHHHHHhhh-------------------ccCCCCCCcchHHHHHHHHHHhhhcc
Q 003795 492 VGVGASRV-RSLYQEAKDNAPSVVFIDELDAVGRE-------------------RGLIKGSGGQERDATLNQLLVCLDGF 551 (795)
Q Consensus 492 ~g~~~~~l-~~lf~~ar~~~p~Il~IDEID~l~~~-------------------r~~~~~Sgge~~r~~l~~LL~~ld~~ 551 (795)
+.+..--. ..+.+...-..|..- .+|+-..+.. .++..=|||++.+..+...+
T Consensus 552 V~Q~~~Lf~gSI~eNi~l~~p~~~-~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaL------ 624 (709)
T COG2274 552 VLQDPFLFSGSIRENIALGNPEAT-DEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARAL------ 624 (709)
T ss_pred EcccchhhcCcHHHHHhcCCCCCC-HHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHh------
Confidence 21211111 344555555555422 3444332211 01111299999999998888
Q ss_pred cCCCcEEEE-eccCCCCC
Q 003795 552 EGRGNVITI-ASTNRPDI 568 (795)
Q Consensus 552 ~~~~~VlVI-atTN~~d~ 568 (795)
..+++++++ .+|+..|.
T Consensus 625 l~~P~ILlLDEaTSaLD~ 642 (709)
T COG2274 625 LSKPKILLLDEATSALDP 642 (709)
T ss_pred ccCCCEEEEeCcccccCH
Confidence 778888888 78876664
No 315
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=97.75 E-value=2.8e-05 Score=93.46 Aligned_cols=53 Identities=23% Similarity=0.265 Sum_probs=43.2
Q ss_pred HHHHhccccccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeec
Q 003795 432 EIVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (795)
Q Consensus 432 ~lv~~~~~~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (795)
++...|+...++.++++.++.| +.|+||||+|||||+++|+|...+..+.|..
T Consensus 8 ~ls~~~~~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~ 62 (635)
T PRK11147 8 GAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIY 62 (635)
T ss_pred eEEEEeCCceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEe
Confidence 3444555566788999999988 8999999999999999999988777666654
No 316
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.75 E-value=3.2e-05 Score=80.29 Aligned_cols=48 Identities=25% Similarity=0.236 Sum_probs=38.7
Q ss_pred ccccccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeec
Q 003795 437 FTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (795)
Q Consensus 437 ~~~~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (795)
|.....+.++++.+..| +.|+||||+|||||+++|+|.+.+..+.+..
T Consensus 10 ~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~ 59 (220)
T cd03265 10 YGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATV 59 (220)
T ss_pred ECCEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 34445677888888877 8899999999999999999988776666544
No 317
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=97.74 E-value=6.3e-05 Score=86.04 Aligned_cols=179 Identities=22% Similarity=0.228 Sum_probs=103.3
Q ss_pred ceEEECCCCCchhHHHHHhhhh---ccccEEEeeccceehhh-----hccchhhH-------HhHHHHHHhcCCceeEhH
Q 003795 453 GILLCGPPGVGKTLLAKAVAGE---AGVNFFSISASQFVEIY-----VGVGASRV-------RSLYQEAKDNAPSVVFID 517 (795)
Q Consensus 453 giLL~GPpGtGKTtLakaLA~e---l~~~~~~is~se~~~~~-----~g~~~~~l-------~~lf~~ar~~~p~Il~ID 517 (795)
.++++|.+|+||+++++++-.. .+.+|+.++|+...... +|...+.. ...+ ....++.+|||
T Consensus 164 ~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~---~~a~~gtl~ld 240 (441)
T PRK10365 164 TVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRF---VEADGGTLFLD 240 (441)
T ss_pred eEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHHHHHhcCCCCCCcCCCCcCCCCce---eECCCCEEEEe
Confidence 3899999999999999999654 35789999998754331 12111100 0011 12346789999
Q ss_pred HHHHHhhhccCCCCCCcchHHHHHHHHHHhhhccc---------CCCcEEEEeccCCCCCCCccccCCCcccc-------
Q 003795 518 ELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE---------GRGNVITIASTNRPDILDPALVRPGRFDR------- 581 (795)
Q Consensus 518 EID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~---------~~~~VlVIatTN~~d~LdpaLlrpgRFd~------- 581 (795)
||+.+... ....|+..++.-. ...++.+|++|+..- ..+..+|+|..
T Consensus 241 ei~~l~~~--------------~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~~---~~~~~~~~~~~~l~~~l~ 303 (441)
T PRK10365 241 EIGDISPM--------------MQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDL---AAEVNAGRFRQDLYYRLN 303 (441)
T ss_pred ccccCCHH--------------HHHHHHHHHccCcEEeCCCCceeeeceEEEEeCCCCH---HHHHHcCCchHHHHHHhc
Confidence 99998654 5566666555321 012466787776531 12223444432
Q ss_pred eecCCCCCHHHHHH----HHHHHHccC----C----CCChhhHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCccCHH
Q 003795 582 KIFIPKPGLIGRME----ILKVHARKK----P----MADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTD 649 (795)
Q Consensus 582 ~I~~~~Pd~~eR~~----Il~~~l~~~----~----~~~d~dl~~LA~~t~G~sgadL~~lv~~A~~~A~~~~~~~It~e 649 (795)
.+.+..|...+|.+ +++.++... . ......+..|..+.-.-+.++|.++++.|+.. .....|+.+
T Consensus 304 ~~~i~~ppLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgN~reL~~~~~~~~~~---~~~~~i~~~ 380 (441)
T PRK10365 304 VVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVERAVVL---LTGEYISER 380 (441)
T ss_pred cceecCCChhhcchhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCCHHHHHHHHHHHHHHh---CCCCccchH
Confidence 34555566665543 444444321 1 11233355566555445678888888887754 234457777
Q ss_pred HHHHH
Q 003795 650 DLLQA 654 (795)
Q Consensus 650 dl~~A 654 (795)
++...
T Consensus 381 ~l~~~ 385 (441)
T PRK10365 381 ELPLA 385 (441)
T ss_pred hCchh
Confidence 76543
No 318
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=97.73 E-value=1.7e-05 Score=80.96 Aligned_cols=44 Identities=23% Similarity=0.300 Sum_probs=36.7
Q ss_pred ccccccCcccCCc--eEEECCCCCchhHHHHHhhhhc--cccEEEeec
Q 003795 441 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEA--GVNFFSISA 484 (795)
Q Consensus 441 ~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el--~~~~~~is~ 484 (795)
..+.++++.+..| ++|.||||+|||||+++|++.. .+.-+.+..
T Consensus 23 ~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~ 70 (194)
T cd03213 23 QLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLI 70 (194)
T ss_pred cceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEE
Confidence 4677888888877 8899999999999999999988 666665543
No 319
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=97.73 E-value=2.9e-05 Score=80.35 Aligned_cols=43 Identities=23% Similarity=0.228 Sum_probs=36.1
Q ss_pred ccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEee
Q 003795 441 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 483 (795)
Q Consensus 441 ~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is 483 (795)
..+.++++.++.| ++|.||||+|||||+++|+|...+.-+++.
T Consensus 19 ~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~ 63 (218)
T cd03266 19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFAT 63 (218)
T ss_pred eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEE
Confidence 4678888888887 889999999999999999998766555544
No 320
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.73 E-value=3.4e-05 Score=80.71 Aligned_cols=56 Identities=25% Similarity=0.314 Sum_probs=48.1
Q ss_pred HHHHHHHhccccccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeec
Q 003795 429 ELEEIVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (795)
Q Consensus 429 ~l~~lv~~~~~~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (795)
+++++++.|.+.....++++.++.| ++|+||+||||||++|.|-+...+..+.|-.
T Consensus 3 ~~~nvsk~y~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i 60 (309)
T COG1125 3 EFENVSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILI 60 (309)
T ss_pred eeeeeehhcCCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEE
Confidence 3456778888888999999999998 8899999999999999999988887766543
No 321
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=97.73 E-value=2.5e-05 Score=87.16 Aligned_cols=49 Identities=27% Similarity=0.342 Sum_probs=39.3
Q ss_pred hccccccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeec
Q 003795 436 FFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (795)
Q Consensus 436 ~~~~~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (795)
.|.+...+.++++.++.| +.|+||||+|||||+++|||...+..+.+..
T Consensus 13 ~~~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i 63 (353)
T TIGR03265 13 RFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQ 63 (353)
T ss_pred EeCCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEE
Confidence 344444567788888777 8999999999999999999988777776654
No 322
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.73 E-value=3.3e-05 Score=82.95 Aligned_cols=48 Identities=15% Similarity=0.138 Sum_probs=38.5
Q ss_pred ccccccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeec
Q 003795 437 FTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (795)
Q Consensus 437 ~~~~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (795)
|.....+.++++.+..| ++|+||||+|||||+++|+|.+.+.-+++..
T Consensus 11 ~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 60 (271)
T PRK13638 11 YQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLW 60 (271)
T ss_pred cCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEE
Confidence 33345677888888887 8899999999999999999988766665543
No 323
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.72 E-value=3.2e-05 Score=78.01 Aligned_cols=43 Identities=26% Similarity=0.257 Sum_probs=35.5
Q ss_pred cccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeec
Q 003795 442 MYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (795)
Q Consensus 442 ~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (795)
.+.++++.++.| ++|+||||+|||||+++|++...+..+++..
T Consensus 15 ~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 59 (182)
T cd03215 15 AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITL 59 (182)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEE
Confidence 566777888877 8999999999999999999988766665543
No 324
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.72 E-value=1.9e-05 Score=79.37 Aligned_cols=44 Identities=30% Similarity=0.434 Sum_probs=36.5
Q ss_pred cccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEee
Q 003795 440 GEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 483 (795)
Q Consensus 440 ~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is 483 (795)
...+.++++.++.| +.|.||||+|||||+++|+|...+..+++.
T Consensus 13 ~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~ 58 (178)
T cd03229 13 KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSIL 58 (178)
T ss_pred eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEE
Confidence 44677888888887 889999999999999999998766655554
No 325
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.72 E-value=5.9e-05 Score=76.08 Aligned_cols=33 Identities=24% Similarity=0.326 Sum_probs=28.9
Q ss_pred ccccccCcccCCc--eEEECCCCCchhHHHHHhhh
Q 003795 441 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAG 473 (795)
Q Consensus 441 ~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~ 473 (795)
..++++++.++.| +.|.||||+|||||+++++.
T Consensus 9 ~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 9 HNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred eeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh
Confidence 4567888889888 88999999999999999974
No 326
>PRK06921 hypothetical protein; Provisional
Probab=97.71 E-value=3e-05 Score=83.28 Aligned_cols=66 Identities=29% Similarity=0.310 Sum_probs=42.2
Q ss_pred CceEEECCCCCchhHHHHHhhhhc----cccEEEeeccceehhhhccchhhHHhHHHHHHhcCCceeEhHHHH
Q 003795 452 GGILLCGPPGVGKTLLAKAVAGEA----GVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELD 520 (795)
Q Consensus 452 ~giLL~GPpGtGKTtLakaLA~el----~~~~~~is~se~~~~~~g~~~~~l~~lf~~ar~~~p~Il~IDEID 520 (795)
.+++|+||+|+|||+|+.+||+++ +..+++++..++....... .......++.. ...++|+|||++
T Consensus 118 ~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~-~~~~~~~~~~~--~~~dlLiIDDl~ 187 (266)
T PRK06921 118 NSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDD-FDLLEAKLNRM--KKVEVLFIDDLF 187 (266)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHH-HHHHHHHHHHh--cCCCEEEEeccc
Confidence 459999999999999999999975 4566677765543322110 01111122222 345699999993
No 327
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=97.71 E-value=3.8e-05 Score=81.70 Aligned_cols=49 Identities=24% Similarity=0.368 Sum_probs=39.5
Q ss_pred hccccccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeec
Q 003795 436 FFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (795)
Q Consensus 436 ~~~~~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (795)
.|.+...+.++++.++.| +.|+||||+|||||+++|+|.+.+.-+.+..
T Consensus 13 ~~~~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~ 63 (251)
T PRK09544 13 SFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKR 63 (251)
T ss_pred EECCceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 344445677888888887 9999999999999999999988776666654
No 328
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=97.70 E-value=1.1e-05 Score=89.63 Aligned_cols=57 Identities=21% Similarity=0.383 Sum_probs=46.6
Q ss_pred HHHHHHHHhccccccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeec
Q 003795 428 LELEEIVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (795)
Q Consensus 428 ~~l~~lv~~~~~~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (795)
+.++++.+.|+....+.++++.++.| +.|+||||+|||||+++|+|.+.+..+.+..
T Consensus 42 i~i~nl~k~y~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i 100 (340)
T PRK13536 42 IDLAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITV 100 (340)
T ss_pred EEEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEE
Confidence 44556666666666888999999988 8899999999999999999988777666553
No 329
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=97.69 E-value=1e-05 Score=90.98 Aligned_cols=53 Identities=25% Similarity=0.271 Sum_probs=40.3
Q ss_pred HHHHhccccccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeec
Q 003795 432 EIVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (795)
Q Consensus 432 ~lv~~~~~~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (795)
++...|.....+.++++.+..| +.|.||||+|||||+++|||...+.-+++..
T Consensus 24 ~v~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i 78 (377)
T PRK11607 24 NLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIML 78 (377)
T ss_pred eEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEE
Confidence 3333444444567788888777 8899999999999999999988776666544
No 330
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.69 E-value=0.00044 Score=79.05 Aligned_cols=30 Identities=37% Similarity=0.640 Sum_probs=27.6
Q ss_pred eEEECCCCCchhHHHHHhhhhccccEEEee
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 483 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el~~~~~~is 483 (795)
+||+||+||||||.++.|+.++|..+...+
T Consensus 113 LLltGPsGcGKSTtvkvLskelg~~~~Ew~ 142 (634)
T KOG1970|consen 113 LLLTGPSGCGKSTTVKVLSKELGYQLIEWS 142 (634)
T ss_pred EEEeCCCCCCchhHHHHHHHhhCceeeeec
Confidence 889999999999999999999998887755
No 331
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=97.68 E-value=0.00074 Score=76.30 Aligned_cols=221 Identities=19% Similarity=0.242 Sum_probs=127.3
Q ss_pred cCccCchHHHHHHHHHHHhccccccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeeccceehhhhccc
Q 003795 418 SDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVG 495 (795)
Q Consensus 418 ~~~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~se~~~~~~g~~ 495 (795)
+.+.|..+++..+.=+. ++.......-|+++.+. |||.|.||+.||-|++.|.+-.....++.--+ +..+|-+
T Consensus 342 PEIyGheDVKKaLLLlL--VGgvd~~~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapRgvYTTGrG---SSGVGLT 416 (721)
T KOG0482|consen 342 PEIYGHEDVKKALLLLL--VGGVDKSPGDGMKIRGDINICLMGDPGVAKSQLLKYISRLAPRGVYTTGRG---SSGVGLT 416 (721)
T ss_pred hhhccchHHHHHHHHHh--hCCCCCCCCCCceeecceeEEecCCCchhHHHHHHHHHhcCcccceecCCC---CCccccc
Confidence 34567777776654333 33344444467888765 99999999999999999988654433332111 1122322
Q ss_pred hhhHHhH-HHH------H-HhcCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHh----hh--cc--cCCCcEEE
Q 003795 496 ASRVRSL-YQE------A-KDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVC----LD--GF--EGRGNVIT 559 (795)
Q Consensus 496 ~~~l~~l-f~~------a-r~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~----ld--~~--~~~~~VlV 559 (795)
..-++.- ..+ | --...+|-.|||+|++... .|..+...+.+ +. |+ .-+..+-|
T Consensus 417 AAVmkDpvTgEM~LEGGALVLAD~GICCIDEfDKM~e~-----------DRtAIHEVMEQQTISIaKAGI~TtLNAR~sI 485 (721)
T KOG0482|consen 417 AAVMKDPVTGEMVLEGGALVLADGGICCIDEFDKMDES-----------DRTAIHEVMEQQTISIAKAGINTTLNARTSI 485 (721)
T ss_pred hhhhcCCCCCeeEeccceEEEccCceEeehhhhhhhhh-----------hhHHHHHHHHhhhhhhhhhccccchhhhHHh
Confidence 2221110 000 0 0112458899999998543 12234443321 11 11 12345678
Q ss_pred EeccCCCC-------------CCCccccCCCcccceecC-CCCCHHHHHHHHHH----HHccCCCCC---hhhHH-----
Q 003795 560 IASTNRPD-------------ILDPALVRPGRFDRKIFI-PKPGLIGRMEILKV----HARKKPMAD---DVDYL----- 613 (795)
Q Consensus 560 IatTN~~d-------------~LdpaLlrpgRFd~~I~~-~~Pd~~eR~~Il~~----~l~~~~~~~---d~dl~----- 613 (795)
+++.|+.. .||.+|++ |||..+-+ ..|+.+.-..+.++ |.....-.. .++..
T Consensus 486 LaAANPayGRYnprrs~e~NI~LPaALLS--RFDll~Li~D~pdrd~D~~LA~HiTyVH~H~~qp~~~fepl~~~~mR~y 563 (721)
T KOG0482|consen 486 LAAANPAYGRYNPRRSPEQNINLPAALLS--RFDLLWLIQDRPDRDNDLRLAQHITYVHQHEEQPPLDFEPLDPNLMRRY 563 (721)
T ss_pred hhhcCccccccCcccChhHhcCCcHHHHH--hhhhhhhhccCCcccchHHHHHHhHhhhccCCCCCccCCCCCHHHHHHH
Confidence 88888753 47899999 99976654 46777665555443 222211110 01111
Q ss_pred -HHHh----------------------------hCC-CCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Q 003795 614 -AVAS----------------------------MTD-GMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQ 656 (795)
Q Consensus 614 -~LA~----------------------------~t~-G~sgadL~~lv~~A~~~A~~~~~~~It~edl~~Al~ 656 (795)
.+|+ ... --|++.|-.+++.+...|..+-...|..+|+.+|+.
T Consensus 564 I~~ak~~~P~vp~~l~dyi~~AYv~~Rrea~~~~~~t~ttpRtLL~IlRls~AlarLRls~~V~~~DV~EALR 636 (721)
T KOG0482|consen 564 ISLAKRKNPVVPEALADYITGAYVELRREARSSKDFTYTTPRTLLGILRLSTALARLRLSDSVEEDDVNEALR 636 (721)
T ss_pred HHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhccCCCcccCHHHHHHHHHHHHHHHHhhhccccchhhHHHHHH
Confidence 0010 011 246788889999888888888888899999999998
No 332
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.68 E-value=4.2e-05 Score=78.53 Aligned_cols=48 Identities=23% Similarity=0.303 Sum_probs=38.8
Q ss_pred ccccccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeec
Q 003795 437 FTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (795)
Q Consensus 437 ~~~~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (795)
|.....+.++++.++.| +.|.||||+|||||+++|+|...+..+.+..
T Consensus 11 ~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~ 60 (204)
T PRK13538 11 RDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLW 60 (204)
T ss_pred ECCEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE
Confidence 33445678888888888 8999999999999999999988776665543
No 333
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=97.67 E-value=4.2e-05 Score=83.55 Aligned_cols=49 Identities=18% Similarity=0.279 Sum_probs=40.4
Q ss_pred hccccccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeec
Q 003795 436 FFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (795)
Q Consensus 436 ~~~~~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (795)
.|++...+.++++.++.| +.|.||||+|||||+++|+|...+..+++..
T Consensus 11 ~~~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i 61 (301)
T TIGR03522 11 LYGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQV 61 (301)
T ss_pred EECCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 344555778888999888 8999999999999999999988777776643
No 334
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=97.67 E-value=4.7e-05 Score=77.76 Aligned_cols=47 Identities=21% Similarity=0.356 Sum_probs=37.9
Q ss_pred ccccccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEee
Q 003795 437 FTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 483 (795)
Q Consensus 437 ~~~~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is 483 (795)
|.....+.++++.+..| +.|+||||+|||||+++|+|...+.-+.+.
T Consensus 10 ~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~ 58 (198)
T TIGR01189 10 RGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVR 58 (198)
T ss_pred ECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEE
Confidence 33445677888888887 899999999999999999998766655554
No 335
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=97.67 E-value=3.4e-05 Score=86.75 Aligned_cols=47 Identities=28% Similarity=0.364 Sum_probs=37.8
Q ss_pred ccccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeecc
Q 003795 439 HGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 485 (795)
Q Consensus 439 ~~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~s 485 (795)
....+.++++.+..| ++|+||+|+|||||+++|||...+.-+.|...
T Consensus 26 ~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~ 74 (375)
T PRK09452 26 GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLD 74 (375)
T ss_pred CeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEC
Confidence 334567778888877 89999999999999999999887776665443
No 336
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=97.66 E-value=4.5e-05 Score=79.08 Aligned_cols=44 Identities=18% Similarity=0.284 Sum_probs=36.8
Q ss_pred ccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeec
Q 003795 441 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (795)
Q Consensus 441 ~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (795)
..+.++++.+..| +.|+||||+|||||+++|+|...+..+.+..
T Consensus 19 ~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~ 64 (221)
T TIGR02211 19 RVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLF 64 (221)
T ss_pred EeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE
Confidence 4677888888877 8899999999999999999988766665543
No 337
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=97.65 E-value=3.6e-05 Score=86.24 Aligned_cols=49 Identities=27% Similarity=0.344 Sum_probs=39.2
Q ss_pred hccccccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccE--EEeec
Q 003795 436 FFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNF--FSISA 484 (795)
Q Consensus 436 ~~~~~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~--~~is~ 484 (795)
.|.....+.++++.++.| +.|+||||+|||||+++|||...+.. +.+..
T Consensus 14 ~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~ 66 (362)
T TIGR03258 14 AYGANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAI 66 (362)
T ss_pred EECCeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEE
Confidence 344444677888888877 88999999999999999999887766 76644
No 338
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.64 E-value=6.1e-05 Score=79.49 Aligned_cols=44 Identities=20% Similarity=0.243 Sum_probs=37.6
Q ss_pred ccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeeccc
Q 003795 443 YRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQ 486 (795)
Q Consensus 443 ~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~se 486 (795)
.+++++.+|.| ++|+||||.||||++|.|.|.+-+..+.+....
T Consensus 40 Vqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G 85 (325)
T COG4586 40 VQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNG 85 (325)
T ss_pred hheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecC
Confidence 46788999998 899999999999999999999877777666544
No 339
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=97.63 E-value=1.7e-05 Score=88.24 Aligned_cols=45 Identities=18% Similarity=0.218 Sum_probs=38.0
Q ss_pred cccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeec
Q 003795 440 GEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (795)
Q Consensus 440 ~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (795)
...+.++++.++.| +.|+||||+|||||+++|+|...+.-+.+..
T Consensus 18 ~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~ 64 (343)
T PRK11153 18 IHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLV 64 (343)
T ss_pred eEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEE
Confidence 34678889999888 8899999999999999999988776666544
No 340
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.63 E-value=4.2e-05 Score=77.94 Aligned_cols=41 Identities=20% Similarity=0.278 Sum_probs=33.4
Q ss_pred cccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEee
Q 003795 442 MYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 483 (795)
Q Consensus 442 ~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is 483 (795)
++. +++.++.| ++|.||||+|||||+++|+|...+..+.+.
T Consensus 16 l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~ 58 (195)
T PRK13541 16 LFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIY 58 (195)
T ss_pred EEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEE
Confidence 444 77888777 899999999999999999998766655544
No 341
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.62 E-value=0.0015 Score=68.68 Aligned_cols=183 Identities=19% Similarity=0.223 Sum_probs=109.2
Q ss_pred eEEECCCCCchhHHHHHhhhhccc---cEEEeeccceeh-----hhh--ccc--hhhH--------HhHHHHHH-hcCCc
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEAGV---NFFSISASQFVE-----IYV--GVG--ASRV--------RSLYQEAK-DNAPS 512 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el~~---~~~~is~se~~~-----~~~--g~~--~~~l--------~~lf~~ar-~~~p~ 512 (795)
+.++|+-|+|||++.|++...++- ..+.++-..+.. ..+ ... ...+ +.+.+... ...|-
T Consensus 54 ~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g~r~v 133 (269)
T COG3267 54 LAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKGKRPV 133 (269)
T ss_pred EEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhCCCCe
Confidence 789999999999999977765532 222333222211 111 111 0111 22222233 34457
Q ss_pred eeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcccCCCcEEEEeccCCCCCCCccccC------CCcccceecCC
Q 003795 513 VVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVR------PGRFDRKIFIP 586 (795)
Q Consensus 513 Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVIatTN~~d~LdpaLlr------pgRFd~~I~~~ 586 (795)
++++||.+.+..+- -..+..|.+.-.+....-.++.++=. .|.+.++. .-|++..|.++
T Consensus 134 ~l~vdEah~L~~~~-----------le~Lrll~nl~~~~~~~l~ivL~Gqp----~L~~~lr~~~l~e~~~R~~ir~~l~ 198 (269)
T COG3267 134 VLMVDEAHDLNDSA-----------LEALRLLTNLEEDSSKLLSIVLIGQP----KLRPRLRLPVLRELEQRIDIRIELP 198 (269)
T ss_pred EEeehhHhhhChhH-----------HHHHHHHHhhcccccCceeeeecCCc----ccchhhchHHHHhhhheEEEEEecC
Confidence 89999999886541 11222222222222222335555432 22232221 12787778899
Q ss_pred CCCHHHHHHHHHHHHccCCCC----ChhhHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHH
Q 003795 587 KPGLIGRMEILKVHARKKPMA----DDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLL 652 (795)
Q Consensus 587 ~Pd~~eR~~Il~~~l~~~~~~----~d~dl~~LA~~t~G~sgadL~~lv~~A~~~A~~~~~~~It~edl~ 652 (795)
+.+.++-...++.+++.-... .+-.+..+...+.| .+.-|.+++..|...|...+...|+...+.
T Consensus 199 P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg-~P~lin~~~~~Al~~a~~a~~~~v~~a~~~ 267 (269)
T COG3267 199 PLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQG-IPRLINNLATLALDAAYSAGEDGVSEAEIK 267 (269)
T ss_pred CcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhcc-chHHHHHHHHHHHHHHHHcCCCccchhhcc
Confidence 999998888888888765332 33346667777777 788999999999999999898888877654
No 342
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.62 E-value=2.5e-05 Score=81.82 Aligned_cols=47 Identities=28% Similarity=0.249 Sum_probs=38.3
Q ss_pred cccccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeec
Q 003795 438 THGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (795)
Q Consensus 438 ~~~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (795)
.....+.++++.+..| ++|+||||+|||||+++|+|...+.-+.+..
T Consensus 11 ~~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~ 59 (232)
T cd03300 11 GGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILL 59 (232)
T ss_pred CCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE
Confidence 3345778888888887 9999999999999999999988766665543
No 343
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=97.62 E-value=0.00016 Score=74.08 Aligned_cols=46 Identities=22% Similarity=0.333 Sum_probs=37.3
Q ss_pred cccccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEee
Q 003795 438 THGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 483 (795)
Q Consensus 438 ~~~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is 483 (795)
.....+.++++.++.| +.|.|+||+|||||+++|+|...+..+.+.
T Consensus 11 ~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~ 58 (201)
T cd03231 11 DGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVL 58 (201)
T ss_pred CCceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE
Confidence 3344677888888887 999999999999999999998766655554
No 344
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.61 E-value=0.00016 Score=75.32 Aligned_cols=42 Identities=24% Similarity=0.418 Sum_probs=35.9
Q ss_pred ccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEe
Q 003795 441 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSI 482 (795)
Q Consensus 441 ~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~i 482 (795)
..+...++.++.| +.|.||+|+|||||+..|++...+..+.+
T Consensus 19 ~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v 62 (226)
T COG1136 19 EALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEV 62 (226)
T ss_pred EecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceE
Confidence 4567788899988 89999999999999999999877766554
No 345
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=97.60 E-value=4.5e-05 Score=86.43 Aligned_cols=57 Identities=16% Similarity=0.165 Sum_probs=45.6
Q ss_pred HHHHHHHHhccccccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeec
Q 003795 428 LELEEIVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (795)
Q Consensus 428 ~~l~~lv~~~~~~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (795)
....++.+.++....+.++++.++.| ++|+||||+|||||+++|++...+..+.+..
T Consensus 29 ~~~~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i 87 (400)
T PRK10070 29 LSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLI 87 (400)
T ss_pred ccHHHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEE
Confidence 34455667776666788899999988 8999999999999999999988776665543
No 346
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.59 E-value=0.00017 Score=74.19 Aligned_cols=31 Identities=19% Similarity=0.335 Sum_probs=23.5
Q ss_pred ccCcccCCceEEECCCCCchhHHHHHhhhhc
Q 003795 445 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEA 475 (795)
Q Consensus 445 ~~gl~i~~giLL~GPpGtGKTtLakaLA~el 475 (795)
++.+....-++|+||||+|||||+|+|++..
T Consensus 19 ~i~l~~g~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 19 DIDMEKKNGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred eEEEcCCcEEEEECCCCCChHHHHHHHHHHH
Confidence 3333333348999999999999999999743
No 347
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=97.58 E-value=3.5e-05 Score=91.18 Aligned_cols=53 Identities=19% Similarity=0.202 Sum_probs=42.4
Q ss_pred HHHHHhcc-ccccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEee
Q 003795 431 EEIVKFFT-HGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 483 (795)
Q Consensus 431 ~~lv~~~~-~~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is 483 (795)
+++...|. ....+.++++.++.| +.|+||||+|||||+++|+|.+.+..+.+.
T Consensus 10 ~~l~~~y~~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~ 65 (556)
T PRK11819 10 NRVSKVVPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEAR 65 (556)
T ss_pred eeEEEEeCCCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE
Confidence 34444554 456788999999988 889999999999999999998876666554
No 348
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=97.57 E-value=7.2e-05 Score=72.01 Aligned_cols=83 Identities=33% Similarity=0.522 Sum_probs=53.1
Q ss_pred ceEEECCCCCchhHHHHHhhhhccc---cEEEeeccceehhhhccchhhHHhHHHHHHhcCCceeEhHHHHHHhhhccCC
Q 003795 453 GILLCGPPGVGKTLLAKAVAGEAGV---NFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLI 529 (795)
Q Consensus 453 giLL~GPpGtGKTtLakaLA~el~~---~~~~is~se~~~~~~g~~~~~l~~lf~~ar~~~p~Il~IDEID~l~~~r~~~ 529 (795)
.|+|+|++||||+++|++|....+. +++.+++.... ..+++.+ .++.++|+|+|.+...
T Consensus 23 pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~-----------~~~l~~a---~~gtL~l~~i~~L~~~---- 84 (138)
T PF14532_consen 23 PVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP-----------AELLEQA---KGGTLYLKNIDRLSPE---- 84 (138)
T ss_dssp -EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC-----------HHHHHHC---TTSEEEEECGCCS-HH----
T ss_pred cEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc-----------HHHHHHc---CCCEEEECChHHCCHH----
Confidence 3899999999999999999886543 44444444311 2344443 5668999999988654
Q ss_pred CCCCcchHHHHHHHHHHhhhcccCCCcEEEEeccC
Q 003795 530 KGSGGQERDATLNQLLVCLDGFEGRGNVITIASTN 564 (795)
Q Consensus 530 ~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVIatTN 564 (795)
....|+..+.... ..++-+|+++.
T Consensus 85 ----------~Q~~L~~~l~~~~-~~~~RlI~ss~ 108 (138)
T PF14532_consen 85 ----------AQRRLLDLLKRQE-RSNVRLIASSS 108 (138)
T ss_dssp ----------HHHHHHHHHHHCT-TTTSEEEEEEC
T ss_pred ----------HHHHHHHHHHhcC-CCCeEEEEEeC
Confidence 5555665565432 34455665554
No 349
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=97.57 E-value=0.00011 Score=78.88 Aligned_cols=44 Identities=20% Similarity=0.210 Sum_probs=36.3
Q ss_pred ccccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEe
Q 003795 439 HGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSI 482 (795)
Q Consensus 439 ~~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~i 482 (795)
....+.++++.++.| ++|+||||+|||||+++|+|...+.-+.+
T Consensus 36 ~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I 81 (264)
T PRK13546 36 TFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKV 81 (264)
T ss_pred ceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEE
Confidence 345677888898888 88999999999999999999876655544
No 350
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.57 E-value=6.6e-05 Score=77.11 Aligned_cols=44 Identities=25% Similarity=0.283 Sum_probs=36.2
Q ss_pred ccccccCcccCCc--eEEECCCCCchhHHHHHhhhhcc---ccEEEeec
Q 003795 441 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAG---VNFFSISA 484 (795)
Q Consensus 441 ~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~---~~~~~is~ 484 (795)
..+.++++.++.| ++|+||||+|||||+++|+|... +..+.+..
T Consensus 21 ~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i 69 (202)
T cd03233 21 PILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHY 69 (202)
T ss_pred eeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEE
Confidence 4567788888887 88999999999999999999876 55565543
No 351
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.56 E-value=0.00012 Score=73.97 Aligned_cols=44 Identities=30% Similarity=0.414 Sum_probs=35.9
Q ss_pred cccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeecc
Q 003795 442 MYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 485 (795)
Q Consensus 442 ~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~s 485 (795)
.+.++++.+..| +.+.||+|||||||++.+||...+.-+++...
T Consensus 20 ~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~ 65 (259)
T COG4525 20 ALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLN 65 (259)
T ss_pred hhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEEC
Confidence 566778888877 88999999999999999999887766655433
No 352
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=97.55 E-value=0.00013 Score=86.79 Aligned_cols=46 Identities=24% Similarity=0.330 Sum_probs=39.4
Q ss_pred cccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeecc
Q 003795 440 GEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 485 (795)
Q Consensus 440 ~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~s 485 (795)
...++++++.+++| ++|+||+|+|||||+++|+|...+..+.+..+
T Consensus 356 ~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~ 403 (582)
T PRK11176 356 VPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLD 403 (582)
T ss_pred CccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEEC
Confidence 44788899999988 99999999999999999999988777666543
No 353
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.55 E-value=5.5e-05 Score=81.83 Aligned_cols=38 Identities=26% Similarity=0.374 Sum_probs=33.3
Q ss_pred ccccccCcccCCc--eEEECCCCCchhHHHHHhhhhcccc
Q 003795 441 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVN 478 (795)
Q Consensus 441 ~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~ 478 (795)
..+.++++.++.| +.|+||||+|||||+++|+|.+.+.
T Consensus 21 ~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~ 60 (282)
T PRK13640 21 PALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPD 60 (282)
T ss_pred cceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCC
Confidence 3677888898888 8999999999999999999987654
No 354
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.54 E-value=0.00029 Score=73.47 Aligned_cols=43 Identities=23% Similarity=0.280 Sum_probs=36.0
Q ss_pred ccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEee
Q 003795 441 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 483 (795)
Q Consensus 441 ~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is 483 (795)
..+.++++.++.| ++|.||||+|||||+++|+|...+.-+.+.
T Consensus 17 ~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~ 61 (229)
T cd03254 17 PVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQIL 61 (229)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEE
Confidence 3667888888888 889999999999999999998866555554
No 355
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=97.54 E-value=0.00011 Score=75.33 Aligned_cols=45 Identities=33% Similarity=0.437 Sum_probs=35.7
Q ss_pred ccccccccCcccCCc--eEEECCCCCchhHHHHHhhhhc--cccEEEee
Q 003795 439 HGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEA--GVNFFSIS 483 (795)
Q Consensus 439 ~~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el--~~~~~~is 483 (795)
....+.++++.+..| ++|+||||+|||||+++|++.. .+..+.+.
T Consensus 12 ~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~ 60 (200)
T cd03217 12 GKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEIL 60 (200)
T ss_pred CEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEE
Confidence 334678888888877 8999999999999999999984 44445443
No 356
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.53 E-value=0.00019 Score=89.06 Aligned_cols=133 Identities=26% Similarity=0.365 Sum_probs=91.6
Q ss_pred CceEEECCCCCchhHHHHHhhhhccccEEEeeccceehh--hhccc----h-hhH---HhHHHHHHhcCCceeEhHHHHH
Q 003795 452 GGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEI--YVGVG----A-SRV---RSLYQEAKDNAPSVVFIDELDA 521 (795)
Q Consensus 452 ~giLL~GPpGtGKTtLakaLA~el~~~~~~is~se~~~~--~~g~~----~-~~l---~~lf~~ar~~~p~Il~IDEID~ 521 (795)
++++|-|.||+|||+|+.+||+..|...++|+.++-.+. .+|.. . +.+ ..-|-.+.+. +..+++||+.-
T Consensus 1544 kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr~-G~WVlLDEiNL 1622 (4600)
T COG5271 1544 KPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRD-GGWVLLDEINL 1622 (4600)
T ss_pred CceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhhc-CCEEEeehhhh
Confidence 569999999999999999999999999999999875443 12211 1 111 1223333333 34788999965
Q ss_pred HhhhccCCCCCCcchHHHHHHHHHHhhhc------------ccCCCcEEEEeccCCCC------CCCccccCCCccccee
Q 003795 522 VGRERGLIKGSGGQERDATLNQLLVCLDG------------FEGRGNVITIASTNRPD------ILDPALVRPGRFDRKI 583 (795)
Q Consensus 522 l~~~r~~~~~Sgge~~r~~l~~LL~~ld~------------~~~~~~VlVIatTN~~d------~LdpaLlrpgRFd~~I 583 (795)
.... ++..|-.++|. +.-..++.|.+|-|+-+ .+|..++. ||. +|
T Consensus 1623 aSQS--------------VlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~n--RFs-vV 1685 (4600)
T COG5271 1623 ASQS--------------VLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLN--RFS-VV 1685 (4600)
T ss_pred hHHH--------------HHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhh--hhh-eE
Confidence 4322 55555555553 22346788888888653 58999998 997 78
Q ss_pred cCCCCCHHHHHHHHHHHHc
Q 003795 584 FIPKPGLIGRMEILKVHAR 602 (795)
Q Consensus 584 ~~~~Pd~~eR~~Il~~~l~ 602 (795)
++...+.++...|......
T Consensus 1686 ~~d~lt~dDi~~Ia~~~yp 1704 (4600)
T COG5271 1686 KMDGLTTDDITHIANKMYP 1704 (4600)
T ss_pred EecccccchHHHHHHhhCC
Confidence 8888888887777765543
No 357
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=97.53 E-value=0.00013 Score=88.43 Aligned_cols=56 Identities=20% Similarity=0.294 Sum_probs=43.6
Q ss_pred HHHHHHHhcc--ccccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeec
Q 003795 429 ELEEIVKFFT--HGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (795)
Q Consensus 429 ~l~~lv~~~~--~~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (795)
.++++...|. .+..++++++.+++| +.|+||+|+|||||++.|+|...+..+.+..
T Consensus 453 ~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~i 512 (686)
T TIGR03797 453 EVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFY 512 (686)
T ss_pred EEEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEE
Confidence 3444444553 245788899999988 9999999999999999999988777666543
No 358
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=97.52 E-value=0.00015 Score=85.19 Aligned_cols=56 Identities=18% Similarity=0.287 Sum_probs=43.4
Q ss_pred HHHHHHhccc-cccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeecc
Q 003795 430 LEEIVKFFTH-GEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 485 (795)
Q Consensus 430 l~~lv~~~~~-~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~s 485 (795)
++++...|.+ ...++++++.+++| +.|+||+|+|||||++.|++...+.-+.+...
T Consensus 337 ~~~vsf~Y~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~ 395 (529)
T TIGR02868 337 LRDLSFGYPGSPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLD 395 (529)
T ss_pred EEEEEEecCCCCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEC
Confidence 3444444432 34688899999988 99999999999999999999988776665443
No 359
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.52 E-value=5.3e-05 Score=77.14 Aligned_cols=35 Identities=29% Similarity=0.432 Sum_probs=30.4
Q ss_pred ccccccCcccCCc--eEEECCCCCchhHHHHHhhhhc
Q 003795 441 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEA 475 (795)
Q Consensus 441 ~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el 475 (795)
..+.++++.+..| ++|+||||+|||||+++|++..
T Consensus 21 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 57 (192)
T cd03232 21 QLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRK 57 (192)
T ss_pred EeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4677788888877 8899999999999999999954
No 360
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=97.51 E-value=0.00013 Score=86.87 Aligned_cols=46 Identities=30% Similarity=0.380 Sum_probs=38.5
Q ss_pred ccccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeecc
Q 003795 439 HGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 485 (795)
Q Consensus 439 ~~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~s 485 (795)
+...++++++.+++| ++|+||+|+|||||++.|++.. +.-+.+..+
T Consensus 362 ~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~ 409 (588)
T PRK11174 362 GKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKIN 409 (588)
T ss_pred CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEEC
Confidence 345678899999988 9999999999999999999988 666665443
No 361
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=97.51 E-value=8.4e-05 Score=83.03 Aligned_cols=48 Identities=31% Similarity=0.468 Sum_probs=38.7
Q ss_pred ccccccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeec
Q 003795 437 FTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (795)
Q Consensus 437 ~~~~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (795)
|.....+.++++.+..| +.|+||||+|||||+++|+|...+..+.+..
T Consensus 12 ~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i 61 (353)
T PRK10851 12 FGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRF 61 (353)
T ss_pred eCCeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE
Confidence 33344677888888877 8999999999999999999988776666543
No 362
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=97.51 E-value=0.00011 Score=73.47 Aligned_cols=41 Identities=29% Similarity=0.465 Sum_probs=33.7
Q ss_pred ccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeecc
Q 003795 445 RRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 485 (795)
Q Consensus 445 ~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~s 485 (795)
.+++.++.| +.+.||+|+|||||+..|||...+..+.+...
T Consensus 17 ~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~ 59 (231)
T COG3840 17 RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILIN 59 (231)
T ss_pred EEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEc
Confidence 456677777 99999999999999999999887777665443
No 363
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.51 E-value=0.00014 Score=83.09 Aligned_cols=127 Identities=18% Similarity=0.277 Sum_probs=76.7
Q ss_pred HHHHhcccc-ccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccE--EEeeccceehh----------hhccch
Q 003795 432 EIVKFFTHG-EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNF--FSISASQFVEI----------YVGVGA 496 (795)
Q Consensus 432 ~lv~~~~~~-~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~--~~is~se~~~~----------~~g~~~ 496 (795)
++...|.+. .+++..++.+|+| +.|+|+||+||||++|+|.+... .. +.+++-++.+. |+.|..
T Consensus 356 dV~f~y~~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~ 434 (591)
T KOG0057|consen 356 DVHFSYGPKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQDS 434 (591)
T ss_pred eeEEEeCCCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeCCcc
Confidence 333444443 3888999999999 99999999999999999998765 33 33444443322 232322
Q ss_pred hhH-HhHHHHHHhcCCceeEhHHHHHHhhh--------------------ccCCCCCCcchHHHHHHHHHHhhhcccCCC
Q 003795 497 SRV-RSLYQEAKDNAPSVVFIDELDAVGRE--------------------RGLIKGSGGQERDATLNQLLVCLDGFEGRG 555 (795)
Q Consensus 497 ~~l-~~lf~~ar~~~p~Il~IDEID~l~~~--------------------r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~ 555 (795)
.-+ ..++.......|++ =.+|+-..+.. |+. .-|||++++..+...+ ..++
T Consensus 435 ~LFndTIl~NI~YGn~sa-s~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~-~LSGGekQrvslaRa~------lKda 506 (591)
T KOG0057|consen 435 VLFNDTILYNIKYGNPSA-SDEEVVEACKRAGLHDVISRLPDGYQTLVGERGL-MLSGGEKQRVSLARAF------LKDA 506 (591)
T ss_pred cccchhHHHHhhcCCCCc-CHHHHHHHHHHcCcHHHHHhccccchhhHhhccc-ccccchHHHHHHHHHH------hcCC
Confidence 211 34455555555542 23444333222 111 1189999988877666 4566
Q ss_pred cEEEE-eccCCCC
Q 003795 556 NVITI-ASTNRPD 567 (795)
Q Consensus 556 ~VlVI-atTN~~d 567 (795)
.++++ .+|...|
T Consensus 507 ~Il~~DEaTS~LD 519 (591)
T KOG0057|consen 507 PILLLDEATSALD 519 (591)
T ss_pred CeEEecCcccccc
Confidence 67777 6666554
No 364
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.50 E-value=0.00019 Score=73.44 Aligned_cols=49 Identities=20% Similarity=0.454 Sum_probs=41.1
Q ss_pred HHHHHHHHHhccccccccccCcccCCc--eEEECCCCCchhHHHHHhhhhc
Q 003795 427 RLELEEIVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEA 475 (795)
Q Consensus 427 ~~~l~~lv~~~~~~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el 475 (795)
+...+++..+|+....+.+.++.+|.+ ..|.||+|||||||+|++-.-.
T Consensus 7 ~~~~~~l~~yYg~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmn 57 (253)
T COG1117 7 AIEVRDLNLYYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMN 57 (253)
T ss_pred eeEecceeEEECchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhc
Confidence 344566777888888899999999987 8899999999999999997643
No 365
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.49 E-value=2e-05 Score=85.33 Aligned_cols=45 Identities=20% Similarity=0.205 Sum_probs=37.7
Q ss_pred cccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeec
Q 003795 440 GEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (795)
Q Consensus 440 ~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (795)
...++++++.+..| +.|+||||+|||||+++|+|...+.-+.+..
T Consensus 19 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i 65 (283)
T PRK13636 19 THALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILF 65 (283)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEE
Confidence 34678888998888 9999999999999999999988766665544
No 366
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=97.49 E-value=0.00015 Score=84.86 Aligned_cols=117 Identities=24% Similarity=0.232 Sum_probs=67.9
Q ss_pred ccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeecccee-------hhhhccchhhHHhHHHHHHhcCC
Q 003795 441 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFV-------EIYVGVGASRVRSLYQEAKDNAP 511 (795)
Q Consensus 441 ~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~se~~-------~~~~g~~~~~l~~lf~~ar~~~p 511 (795)
.+.+.+++.++.| +++.||+|||||+|.|+|||--..-.+.+.+..-. ..|+..+ .+++..-......
T Consensus 407 ~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY~p~G--tLre~l~YP~~~~- 483 (604)
T COG4178 407 TLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYLPQG--TLREALCYPNAAP- 483 (604)
T ss_pred eeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCCCCCCc--cHHHHHhCCCCCC-
Confidence 4667778888877 99999999999999999999765555555544211 1133322 2222221111110
Q ss_pred ceeEhHHHHHHhhh--------ccCC-C-----CCCcchHHHHHHHHHHhhhcccCCCcEEEE-eccCCCC
Q 003795 512 SVVFIDELDAVGRE--------RGLI-K-----GSGGQERDATLNQLLVCLDGFEGRGNVITI-ASTNRPD 567 (795)
Q Consensus 512 ~Il~IDEID~l~~~--------r~~~-~-----~Sgge~~r~~l~~LL~~ld~~~~~~~VlVI-atTN~~d 567 (795)
. +==+|+-..+.. +... . =|+||+.+..++.++ ...+.++|+ .||+..|
T Consensus 484 ~-~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARil------L~kP~~v~LDEATsALD 547 (604)
T COG4178 484 D-FSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLL------LHKPKWVFLDEATSALD 547 (604)
T ss_pred C-CChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHH------HcCCCEEEEecchhccC
Confidence 0 111111111111 0000 1 189999999999998 667788888 7776543
No 367
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=97.49 E-value=0.00047 Score=75.20 Aligned_cols=127 Identities=14% Similarity=0.132 Sum_probs=86.1
Q ss_pred ccCCceEEECCCCCchhHHHHHhhhhccc-------------cEEEeeccceehhhhccchhhHHhHHHHHHh-----cC
Q 003795 449 RIPGGILLCGPPGVGKTLLAKAVAGEAGV-------------NFFSISASQFVEIYVGVGASRVRSLYQEAKD-----NA 510 (795)
Q Consensus 449 ~i~~giLL~GPpGtGKTtLakaLA~el~~-------------~~~~is~se~~~~~~g~~~~~l~~lf~~ar~-----~~ 510 (795)
+++...||+|+.|.||+++++.++..+-+ .+..++..+ .. -....++.+.+.+.. ..
T Consensus 16 ~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g-~~----i~vd~Ir~l~~~~~~~~~~~~~ 90 (299)
T PRK07132 16 KISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFD-KD----LSKSEFLSAINKLYFSSFVQSQ 90 (299)
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCC-Cc----CCHHHHHHHHHHhccCCcccCC
Confidence 34456899999999999999999887621 111221000 00 011234445444422 24
Q ss_pred CceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcccCCCcEEEEeccCCCCCCCccccCCCcccceecCCCCCH
Q 003795 511 PSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGL 590 (795)
Q Consensus 511 p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVIatTN~~d~LdpaLlrpgRFd~~I~~~~Pd~ 590 (795)
..|++||+++.+... ..+.|+..++ .+..++++|..|+.++.+-|.+++ |.. ++.|.+|+.
T Consensus 91 ~KvvII~~~e~m~~~--------------a~NaLLK~LE--EPp~~t~~il~~~~~~kll~TI~S--Rc~-~~~f~~l~~ 151 (299)
T PRK07132 91 KKILIIKNIEKTSNS--------------LLNALLKTIE--EPPKDTYFLLTTKNINKVLPTIVS--RCQ-VFNVKEPDQ 151 (299)
T ss_pred ceEEEEecccccCHH--------------HHHHHHHHhh--CCCCCeEEEEEeCChHhChHHHHh--CeE-EEECCCCCH
Confidence 568999998877543 7889999999 566777888777778899999988 443 789999998
Q ss_pred HHHHHHHHH
Q 003795 591 IGRMEILKV 599 (795)
Q Consensus 591 ~eR~~Il~~ 599 (795)
++....+..
T Consensus 152 ~~l~~~l~~ 160 (299)
T PRK07132 152 QKILAKLLS 160 (299)
T ss_pred HHHHHHHHH
Confidence 887766653
No 368
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=97.48 E-value=0.00012 Score=82.00 Aligned_cols=143 Identities=21% Similarity=0.297 Sum_probs=78.9
Q ss_pred CcccCCceEEECCCCCchhHHHHHhhhhccc-cEEEeeccceehhhh------ccchhhHHhHHHHHHhcCCceeEhHHH
Q 003795 447 GVRIPGGILLCGPPGVGKTLLAKAVAGEAGV-NFFSISASQFVEIYV------GVGASRVRSLYQEAKDNAPSVVFIDEL 519 (795)
Q Consensus 447 gl~i~~giLL~GPpGtGKTtLakaLA~el~~-~~~~is~se~~~~~~------g~~~~~l~~lf~~ar~~~p~Il~IDEI 519 (795)
....|+|+.|+||+|+|||+|+-+....+.. .-.++...+|+.... ......+..+-+..... ..+|+|||+
T Consensus 58 ~~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~~~~l~~va~~l~~~-~~lLcfDEF 136 (362)
T PF03969_consen 58 PPPPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQDDPLPQVADELAKE-SRLLCFDEF 136 (362)
T ss_pred cCCCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCCCccHHHHHHHHHhc-CCEEEEeee
Confidence 3456899999999999999999999887754 222333334433210 01111222333333332 348999998
Q ss_pred HHHhhhccCCCCCCcchHHHHHHHHHHhhhcccCCCcEEEEeccCCC-CCCCccccCCCcccceecCCCCCHHHHHHHHH
Q 003795 520 DAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRP-DILDPALVRPGRFDRKIFIPKPGLIGRMEILK 598 (795)
Q Consensus 520 D~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVIatTN~~-d~LdpaLlrpgRFd~~I~~~~Pd~~eR~~Il~ 598 (795)
.---.. .-..+..|+..+= ..++++|+|+|.+ +.|-+ +.+.+...+ --.++++
T Consensus 137 ~V~Dia-----------DAmil~rLf~~l~----~~gvvlVaTSN~~P~~Ly~-----~gl~r~~Fl------p~I~~l~ 190 (362)
T PF03969_consen 137 QVTDIA-----------DAMILKRLFEALF----KRGVVLVATSNRPPEDLYK-----NGLQRERFL------PFIDLLK 190 (362)
T ss_pred eccchh-----------HHHHHHHHHHHHH----HCCCEEEecCCCChHHHcC-----CcccHHHHH------HHHHHHH
Confidence 542110 0124555554442 3578999999974 22222 223222111 1245666
Q ss_pred HHHccCCCCChhhHHHHH
Q 003795 599 VHARKKPMADDVDYLAVA 616 (795)
Q Consensus 599 ~~l~~~~~~~d~dl~~LA 616 (795)
.++.-..+....|+....
T Consensus 191 ~~~~vv~ld~~~DyR~~~ 208 (362)
T PF03969_consen 191 RRCDVVELDGGVDYRRRG 208 (362)
T ss_pred hceEEEEecCCCchhhhc
Confidence 676666666666765543
No 369
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=97.48 E-value=4.1e-05 Score=78.99 Aligned_cols=52 Identities=23% Similarity=0.323 Sum_probs=41.1
Q ss_pred HHHhccccccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeec
Q 003795 433 IVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (795)
Q Consensus 433 lv~~~~~~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (795)
+...|.....+.++++.++.| +.|+||||+|||||+++|+|...+..+.+..
T Consensus 5 l~~~~~~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~ 58 (213)
T cd03235 5 LTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRV 58 (213)
T ss_pred ceeEECCEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEE
Confidence 334444445778888998887 8999999999999999999988776666554
No 370
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.48 E-value=7.8e-05 Score=80.53 Aligned_cols=44 Identities=23% Similarity=0.265 Sum_probs=37.1
Q ss_pred ccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeec
Q 003795 441 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (795)
Q Consensus 441 ~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (795)
..+.++++.+..| +.|+||||+|||||+++|+|.+.+..+.+..
T Consensus 21 ~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~ 66 (279)
T PRK13635 21 YALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITV 66 (279)
T ss_pred cceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEE
Confidence 3677888888888 8899999999999999999998777666543
No 371
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=97.48 E-value=0.00021 Score=87.04 Aligned_cols=56 Identities=27% Similarity=0.263 Sum_probs=43.9
Q ss_pred HHHHHHHhccc--cccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeec
Q 003795 429 ELEEIVKFFTH--GEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (795)
Q Consensus 429 ~l~~lv~~~~~--~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (795)
.++++...|.. ...++++++.+++| +.++||+|+|||||+++|+|...+.-+.+..
T Consensus 479 ~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~i 538 (710)
T TIGR03796 479 ELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILF 538 (710)
T ss_pred EEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEE
Confidence 34445545542 45788899999988 9999999999999999999998777666544
No 372
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.47 E-value=0.0003 Score=72.25 Aligned_cols=108 Identities=19% Similarity=0.260 Sum_probs=59.0
Q ss_pred eEEECCCCCchhHHHHHhhhhc---cccEEEeeccceehhhhcc-------------------c----hhhHHhHHHHHH
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEIYVGV-------------------G----ASRVRSLYQEAK 507 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el---~~~~~~is~se~~~~~~g~-------------------~----~~~l~~lf~~ar 507 (795)
++|+||||+|||+|+..++... +...++++..++....+-+ . ...+..+...+.
T Consensus 15 ~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~ 94 (209)
T TIGR02237 15 TQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGVAIQKTSKFID 94 (209)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHHHHHHHHHHHh
Confidence 8999999999999998887533 5567777775421110000 0 001222333344
Q ss_pred hcCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcccCCCcEEEEeccC
Q 003795 508 DNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTN 564 (795)
Q Consensus 508 ~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVIatTN 564 (795)
...+++++||-+..+..... . +........+..++..+..+....++.+|.+..
T Consensus 95 ~~~~~lvVIDSis~l~~~~~--~-~~~~~~~~~l~~~~~~L~~~~~~~~v~vl~t~~ 148 (209)
T TIGR02237 95 RDSASLVVVDSFTALYRLEL--S-DDRISRNRELARQLTLLLSLARKKNLAVVITNQ 148 (209)
T ss_pred hcCccEEEEeCcHHHhHHHh--C-CccHHHHHHHHHHHHHHHHHHHHcCCEEEEEcc
Confidence 55788999999988753211 1 111112223333444444443455666666543
No 373
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=97.47 E-value=4.1e-05 Score=78.40 Aligned_cols=50 Identities=16% Similarity=0.171 Sum_probs=40.2
Q ss_pred hccccccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeecc
Q 003795 436 FFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 485 (795)
Q Consensus 436 ~~~~~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~s 485 (795)
.|.....+.++++.++.| +.|+||||+|||||+++|+|...+..+.+...
T Consensus 7 ~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~ 58 (206)
T TIGR03608 7 KFGDKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLN 58 (206)
T ss_pred EECCEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEEC
Confidence 344445678888888887 89999999999999999999887776766543
No 374
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.47 E-value=9.6e-05 Score=79.81 Aligned_cols=43 Identities=16% Similarity=0.224 Sum_probs=36.3
Q ss_pred cccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeec
Q 003795 442 MYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (795)
Q Consensus 442 ~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (795)
.+.++++.+..| +.|+||||+|||||+++|+|...+.-+.+..
T Consensus 22 ~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 66 (279)
T PRK13650 22 TLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIII 66 (279)
T ss_pred eeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEE
Confidence 677888888887 8999999999999999999988766665543
No 375
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=97.47 E-value=0.00011 Score=81.62 Aligned_cols=43 Identities=21% Similarity=0.275 Sum_probs=36.8
Q ss_pred ccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEee
Q 003795 441 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 483 (795)
Q Consensus 441 ~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is 483 (795)
..+.++++.++.| +.|+||||+|||||+++|++...+..+++.
T Consensus 19 ~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~ 63 (343)
T TIGR02314 19 QALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVI 63 (343)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEE
Confidence 4678888998888 889999999999999999998877666554
No 376
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=97.47 E-value=8e-05 Score=83.41 Aligned_cols=47 Identities=15% Similarity=0.114 Sum_probs=39.3
Q ss_pred ccccccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEee
Q 003795 437 FTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 483 (795)
Q Consensus 437 ~~~~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is 483 (795)
|+....+.++++.++.| ++|+||||+|||||+++|++...+..+.+.
T Consensus 3 ~~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~ 51 (363)
T TIGR01186 3 TGGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIF 51 (363)
T ss_pred cCCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEE
Confidence 34455678889999988 899999999999999999999877766554
No 377
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=97.46 E-value=3.3e-05 Score=90.65 Aligned_cols=48 Identities=23% Similarity=0.304 Sum_probs=38.2
Q ss_pred hccccccccccCcccCCc--eEEECCCCCchhHHHHHhhhhc--cccEEEee
Q 003795 436 FFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEA--GVNFFSIS 483 (795)
Q Consensus 436 ~~~~~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el--~~~~~~is 483 (795)
.|.....+.++++.+..| +.|+||||+|||||+++|+|.. .+.-+.+.
T Consensus 9 ~~~~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~ 60 (520)
T TIGR03269 9 KFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRII 60 (520)
T ss_pred EECCeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEE
Confidence 344445778888999888 8999999999999999999985 45555543
No 378
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.46 E-value=0.00011 Score=79.34 Aligned_cols=44 Identities=25% Similarity=0.282 Sum_probs=37.6
Q ss_pred ccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeec
Q 003795 441 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (795)
Q Consensus 441 ~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (795)
..+.++++.+..| +.|+||||+|||||+++|+|...+..+.+..
T Consensus 18 ~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~ 63 (277)
T PRK13652 18 EALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLI 63 (277)
T ss_pred ceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE
Confidence 3678888998888 8899999999999999999988777776654
No 379
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.46 E-value=0.0001 Score=79.37 Aligned_cols=44 Identities=25% Similarity=0.323 Sum_probs=37.3
Q ss_pred ccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeec
Q 003795 441 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (795)
Q Consensus 441 ~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (795)
..+.++++.+..| +.|+||||+|||||+++|+|...+..+.+..
T Consensus 19 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 64 (274)
T PRK13647 19 KALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKV 64 (274)
T ss_pred eeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEE
Confidence 4677888888888 9999999999999999999988776666543
No 380
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.44 E-value=9.3e-05 Score=80.31 Aligned_cols=44 Identities=18% Similarity=0.209 Sum_probs=37.4
Q ss_pred cccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeecc
Q 003795 442 MYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 485 (795)
Q Consensus 442 ~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~s 485 (795)
.++++++.++.| +.|+||||+|||||+++|+|...+..+.+...
T Consensus 21 ~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~ 66 (288)
T PRK13643 21 ALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVG 66 (288)
T ss_pred ceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEEC
Confidence 567888899888 99999999999999999999887776665443
No 381
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.44 E-value=0.00011 Score=78.91 Aligned_cols=43 Identities=21% Similarity=0.310 Sum_probs=35.9
Q ss_pred ccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEee
Q 003795 441 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 483 (795)
Q Consensus 441 ~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is 483 (795)
..+.++++.+..| +.|.||||+|||||+++|+|...+.-+.+.
T Consensus 23 ~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~ 67 (271)
T PRK13632 23 NALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIK 67 (271)
T ss_pred cceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEE
Confidence 4577888888877 889999999999999999998876655543
No 382
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=97.43 E-value=0.00018 Score=82.23 Aligned_cols=60 Identities=22% Similarity=0.313 Sum_probs=51.6
Q ss_pred HHHHHHHHHhccccc--cccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeeccc
Q 003795 427 RLELEEIVKFFTHGE--MYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQ 486 (795)
Q Consensus 427 ~~~l~~lv~~~~~~~--~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~se 486 (795)
..+++++...|.+.. .++++++.+..| +.|+|++||||||+++.|++...+.-+++..+.
T Consensus 336 ~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g 399 (573)
T COG4987 336 ALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNG 399 (573)
T ss_pred eeeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECC
Confidence 677888888887655 889999999988 999999999999999999998888877776554
No 383
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.43 E-value=0.00011 Score=78.70 Aligned_cols=43 Identities=28% Similarity=0.344 Sum_probs=36.1
Q ss_pred cccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeec
Q 003795 442 MYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (795)
Q Consensus 442 ~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (795)
.+.++++.+..| ++|.||||+|||||+++|+|...+.-+.+..
T Consensus 24 ~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~ 68 (269)
T PRK13648 24 TLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFY 68 (269)
T ss_pred ceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE
Confidence 567788888877 8899999999999999999988766665544
No 384
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.43 E-value=8.9e-05 Score=79.86 Aligned_cols=43 Identities=23% Similarity=0.206 Sum_probs=36.3
Q ss_pred ccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEee
Q 003795 441 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 483 (795)
Q Consensus 441 ~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is 483 (795)
..+.++++.+..| +.|.||||+|||||+++|+|...+.-+.+.
T Consensus 16 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~ 60 (274)
T PRK13644 16 PALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVL 60 (274)
T ss_pred ceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEE
Confidence 3678888888888 899999999999999999998766655553
No 385
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=97.43 E-value=0.00024 Score=76.21 Aligned_cols=154 Identities=19% Similarity=0.221 Sum_probs=78.5
Q ss_pred eEEECCCCCchhHHHHHhhhh--ccccE---EEeeccceehh---------hhccc---------hhhHHhHHHHHHhcC
Q 003795 454 ILLCGPPGVGKTLLAKAVAGE--AGVNF---FSISASQFVEI---------YVGVG---------ASRVRSLYQEAKDNA 510 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~e--l~~~~---~~is~se~~~~---------~~g~~---------~~~l~~lf~~ar~~~ 510 (795)
++|+|++|+|||+||+.++.. ....| +.++.+..... .++.. .......+.......
T Consensus 22 v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~ 101 (287)
T PF00931_consen 22 VAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSISDPKDIEELQDQLRELLKDK 101 (287)
T ss_dssp EEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STSSCCSSHHHHHHHHHHHHCCT
T ss_pred EEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhccc
Confidence 899999999999999999987 32222 22333221110 11111 111222233333445
Q ss_pred CceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcccCCCcEEEEeccCCCCCCCccccCCCcccceecCCCCCH
Q 003795 511 PSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGL 590 (795)
Q Consensus 511 p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVIatTN~~d~LdpaLlrpgRFd~~I~~~~Pd~ 590 (795)
++++++|+++... .+..+...+... ..+.-||.||....... .+- .-...+.++..+.
T Consensus 102 ~~LlVlDdv~~~~----------------~~~~l~~~~~~~--~~~~kilvTTR~~~v~~-~~~---~~~~~~~l~~L~~ 159 (287)
T PF00931_consen 102 RCLLVLDDVWDEE----------------DLEELREPLPSF--SSGSKILVTTRDRSVAG-SLG---GTDKVIELEPLSE 159 (287)
T ss_dssp SEEEEEEEE-SHH----------------HH-------HCH--HSS-EEEEEESCGGGGT-THH---SCEEEEECSS--H
T ss_pred cceeeeeeecccc----------------cccccccccccc--ccccccccccccccccc-ccc---ccccccccccccc
Confidence 8899999876542 232333222211 22455666776543221 111 1145889999999
Q ss_pred HHHHHHHHHHHccCC----CCChhhHHHHHhhCCCCcHHHHHHH
Q 003795 591 IGRMEILKVHARKKP----MADDVDYLAVASMTDGMVGAELANI 630 (795)
Q Consensus 591 ~eR~~Il~~~l~~~~----~~~d~dl~~LA~~t~G~sgadL~~l 630 (795)
++-.++|..+..... .........++..+.| .+-.|..+
T Consensus 160 ~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~g-lPLal~~~ 202 (287)
T PF00931_consen 160 EEALELFKKRAGRKESESPEDLEDLAKEIVEKCGG-LPLALKLI 202 (287)
T ss_dssp HHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT--HHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccc-cccccccc
Confidence 999999998875443 1112235678888765 44444333
No 386
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.42 E-value=0.0003 Score=71.26 Aligned_cols=57 Identities=21% Similarity=0.318 Sum_probs=49.1
Q ss_pred HHHHHHHhccccccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeecc
Q 003795 429 ELEEIVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 485 (795)
Q Consensus 429 ~l~~lv~~~~~~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~s 485 (795)
.++++.+.|.........++.+|.| -.|.||||.|||||+..+++.+....+.+...
T Consensus 3 ~i~nv~K~y~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~ 61 (252)
T COG4604 3 TIENVSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITID 61 (252)
T ss_pred eehhhhHhhCCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEe
Confidence 4577888999999999999999987 77999999999999999999888777666544
No 387
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.42 E-value=0.00012 Score=75.45 Aligned_cols=40 Identities=23% Similarity=0.315 Sum_probs=32.6
Q ss_pred ccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeec
Q 003795 445 RRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (795)
Q Consensus 445 ~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (795)
++++.+..| +.|.||||+|||||+++|++...+.-+.+..
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~ 57 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLI 57 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEE
Confidence 566777777 8999999999999999999988766665543
No 388
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=97.41 E-value=0.00038 Score=73.25 Aligned_cols=125 Identities=21% Similarity=0.214 Sum_probs=70.3
Q ss_pred CceEEECCCCCchhHHHHHhhhhccccEEEeeccceehhhhccchhhHHhHHHHHHhcCCceeEhHHHHHHhhhccCCCC
Q 003795 452 GGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKG 531 (795)
Q Consensus 452 ~giLL~GPpGtGKTtLakaLA~el~~~~~~is~se~~~~~~g~~~~~l~~lf~~ar~~~p~Il~IDEID~l~~~r~~~~~ 531 (795)
.|-.+.||.|||||.++|.+|..+|..++.+++++..+. ..+..++.-+... .+.+++||++.+-..-
T Consensus 33 ~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~~------~~l~ril~G~~~~-GaW~cfdefnrl~~~v----- 100 (231)
T PF12774_consen 33 LGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMDY------QSLSRILKGLAQS-GAWLCFDEFNRLSEEV----- 100 (231)
T ss_dssp TEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-H------HHHHHHHHHHHHH-T-EEEEETCCCSSHHH-----
T ss_pred CCCCCcCCCCCCchhHHHHHHHHhCCeEEEecccccccH------HHHHHHHHHHhhc-CchhhhhhhhhhhHHH-----
Confidence 346789999999999999999999999999999975443 3456667666554 4579999998774331
Q ss_pred CCcchHHHHHHHHHHhh----hccc-----------CCCcEEEEeccCC----CCCCCccccCCCcccceecCCCCCHHH
Q 003795 532 SGGQERDATLNQLLVCL----DGFE-----------GRGNVITIASTNR----PDILDPALVRPGRFDRKIFIPKPGLIG 592 (795)
Q Consensus 532 Sgge~~r~~l~~LL~~l----d~~~-----------~~~~VlVIatTN~----~d~LdpaLlrpgRFd~~I~~~~Pd~~e 592 (795)
-.++.+.+..+ ..-. -+.++-+..|.|. ...||+.|+. +=|.+.+..||...
T Consensus 101 ------LS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~---lFRpvam~~PD~~~ 171 (231)
T PF12774_consen 101 ------LSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKA---LFRPVAMMVPDLSL 171 (231)
T ss_dssp ------HHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCT---TEEEEE--S--HHH
T ss_pred ------HHHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHH---HhheeEEeCCCHHH
Confidence 11222222222 1100 0122333344442 2467887765 33588888998776
Q ss_pred HHHHH
Q 003795 593 RMEIL 597 (795)
Q Consensus 593 R~~Il 597 (795)
..+++
T Consensus 172 I~ei~ 176 (231)
T PF12774_consen 172 IAEIL 176 (231)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55554
No 389
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=97.41 E-value=7.7e-05 Score=88.20 Aligned_cols=52 Identities=21% Similarity=0.218 Sum_probs=40.9
Q ss_pred HHHHhcc-ccccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEee
Q 003795 432 EIVKFFT-HGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 483 (795)
Q Consensus 432 ~lv~~~~-~~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is 483 (795)
++...|. ...++.++++.+..| ++|+||||+|||||+++|+|...+..+.+.
T Consensus 9 nls~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~ 63 (552)
T TIGR03719 9 RVSKVVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEAR 63 (552)
T ss_pred eEEEecCCCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE
Confidence 3344454 445788899999988 889999999999999999998866555544
No 390
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=97.41 E-value=0.00016 Score=76.03 Aligned_cols=47 Identities=28% Similarity=0.436 Sum_probs=37.6
Q ss_pred ccccccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEee
Q 003795 437 FTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 483 (795)
Q Consensus 437 ~~~~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is 483 (795)
|.....+.++++.+..| +.|.||||+|||||+++|+|...+.-+++.
T Consensus 10 ~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~ 58 (237)
T TIGR00968 10 FGSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIR 58 (237)
T ss_pred ECCeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEE
Confidence 33445778888888887 889999999999999999998766555543
No 391
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=97.41 E-value=0.00025 Score=84.04 Aligned_cols=45 Identities=20% Similarity=0.189 Sum_probs=38.0
Q ss_pred ccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeecc
Q 003795 441 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 485 (795)
Q Consensus 441 ~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~s 485 (795)
..++++++.+++| ++++|++|+|||||+++|+|...+.-+.+...
T Consensus 346 ~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~ 392 (571)
T TIGR02203 346 PALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLD 392 (571)
T ss_pred ccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEEC
Confidence 4678888998887 99999999999999999999987776665444
No 392
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=97.40 E-value=9.9e-05 Score=80.85 Aligned_cols=44 Identities=23% Similarity=0.224 Sum_probs=37.0
Q ss_pred ccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeec
Q 003795 441 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (795)
Q Consensus 441 ~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (795)
..+.++++.+..| ++|+||||+|||||+++|+|.+.+..+.+..
T Consensus 21 ~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~ 66 (305)
T PRK13651 21 KALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEW 66 (305)
T ss_pred cceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE
Confidence 3677888888888 9999999999999999999988766666544
No 393
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.40 E-value=5.7e-05 Score=79.02 Aligned_cols=45 Identities=20% Similarity=0.338 Sum_probs=38.1
Q ss_pred ccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeecc
Q 003795 441 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 485 (795)
Q Consensus 441 ~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~s 485 (795)
..+.++++.++.| ++|+||||+|||||+++|+|.+.+.-+.+...
T Consensus 19 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~ 65 (233)
T cd03258 19 TALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVD 65 (233)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEC
Confidence 5678888988887 89999999999999999999987766666543
No 394
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=97.39 E-value=6.3e-05 Score=79.12 Aligned_cols=46 Identities=22% Similarity=0.312 Sum_probs=38.2
Q ss_pred ccccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeec
Q 003795 439 HGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (795)
Q Consensus 439 ~~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (795)
+...+.++++.++.| ++|+||||+|||||+++|+|...+..+.+..
T Consensus 14 ~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~ 61 (243)
T TIGR02315 14 GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILL 61 (243)
T ss_pred CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEE
Confidence 345678888998888 8899999999999999999988766666543
No 395
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=97.39 E-value=5.7e-05 Score=78.83 Aligned_cols=54 Identities=20% Similarity=0.271 Sum_probs=42.1
Q ss_pred HHHHhccccccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeecc
Q 003795 432 EIVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 485 (795)
Q Consensus 432 ~lv~~~~~~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~s 485 (795)
++...|.....+.++++.++.| +.|+||||+|||||+++|+|...+..+.+...
T Consensus 12 ~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~ 67 (225)
T PRK10247 12 NVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFE 67 (225)
T ss_pred ccEEeeCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEEC
Confidence 3333444445778889999888 89999999999999999999877766666543
No 396
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=97.38 E-value=0.00019 Score=74.13 Aligned_cols=40 Identities=28% Similarity=0.402 Sum_probs=32.7
Q ss_pred cccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEee
Q 003795 444 RRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 483 (795)
Q Consensus 444 ~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is 483 (795)
.++++.+..| +.|.||||+|||||+++|+|...+..+++.
T Consensus 15 ~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~ 56 (213)
T TIGR01277 15 MEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIK 56 (213)
T ss_pred eeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEE
Confidence 4566777766 999999999999999999998866655554
No 397
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=97.37 E-value=6.4e-05 Score=78.71 Aligned_cols=49 Identities=24% Similarity=0.166 Sum_probs=39.6
Q ss_pred hccccccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeec
Q 003795 436 FFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (795)
Q Consensus 436 ~~~~~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (795)
.|.....+.++++.+..| ++|+||||+|||||+++|+|...+..+.+..
T Consensus 9 ~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~ 59 (236)
T cd03219 9 RFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLF 59 (236)
T ss_pred EECCEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEE
Confidence 344445678888888887 8899999999999999999988776666654
No 398
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.37 E-value=4.1e-05 Score=79.41 Aligned_cols=45 Identities=22% Similarity=0.343 Sum_probs=38.0
Q ss_pred cccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeec
Q 003795 440 GEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (795)
Q Consensus 440 ~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (795)
...+.++++.++.| +.|+||||+|||||+++|+|...+.-+.+..
T Consensus 17 ~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~ 63 (220)
T cd03293 17 VTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLV 63 (220)
T ss_pred eEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 34678888888887 8899999999999999999988776666654
No 399
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=97.37 E-value=0.00014 Score=73.75 Aligned_cols=45 Identities=20% Similarity=0.219 Sum_probs=37.6
Q ss_pred cccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeec
Q 003795 440 GEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (795)
Q Consensus 440 ~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (795)
...+.++++.+..| +.|.||||+|||||+++|+|...+..+.+..
T Consensus 5 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~ 51 (190)
T TIGR01166 5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLI 51 (190)
T ss_pred cceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEE
Confidence 34677888888887 8999999999999999999988776666644
No 400
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.37 E-value=0.00038 Score=73.92 Aligned_cols=32 Identities=34% Similarity=0.424 Sum_probs=27.4
Q ss_pred eEEECCCCCchhHHHHHhhhhccccEEEeecc
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 485 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el~~~~~~is~s 485 (795)
+.|+||||+|||||+++|++...+..+.+...
T Consensus 28 ~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~ 59 (246)
T cd03237 28 IGILGPNGIGKTTFIKMLAGVLKPDEGDIEIE 59 (246)
T ss_pred EEEECCCCCCHHHHHHHHhCCCcCCCCeEEEC
Confidence 88999999999999999999887766666543
No 401
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.37 E-value=0.00014 Score=78.72 Aligned_cols=44 Identities=14% Similarity=0.218 Sum_probs=37.2
Q ss_pred ccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeec
Q 003795 441 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (795)
Q Consensus 441 ~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (795)
..+.++++.+..| +.|.||||+|||||+++|+|...+.-+.+..
T Consensus 21 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~ 66 (286)
T PRK13646 21 QAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTV 66 (286)
T ss_pred CceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEE
Confidence 4678888998888 8999999999999999999988776665543
No 402
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=97.36 E-value=4.3e-05 Score=79.19 Aligned_cols=48 Identities=27% Similarity=0.367 Sum_probs=38.9
Q ss_pred ccccccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeec
Q 003795 437 FTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (795)
Q Consensus 437 ~~~~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (795)
|.....+.++++.+..| ++|+||||+|||||+++|+|...+.-+.+..
T Consensus 10 ~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~ 59 (222)
T cd03224 10 YGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRF 59 (222)
T ss_pred cCCeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEE
Confidence 33445678888888887 8999999999999999999988776666554
No 403
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=97.36 E-value=0.00037 Score=84.72 Aligned_cols=56 Identities=18% Similarity=0.179 Sum_probs=43.0
Q ss_pred HHHHHHhccc--cccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeecc
Q 003795 430 LEEIVKFFTH--GEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 485 (795)
Q Consensus 430 l~~lv~~~~~--~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~s 485 (795)
++++...|.. ...++++++.+++| +.|+||+|+|||||++.|+|...+.-+.+...
T Consensus 466 ~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~id 525 (694)
T TIGR03375 466 FRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLD 525 (694)
T ss_pred EEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEC
Confidence 3444444532 34678899999988 99999999999999999999887776655443
No 404
>PRK13409 putative ATPase RIL; Provisional
Probab=97.36 E-value=0.00033 Score=83.44 Aligned_cols=129 Identities=20% Similarity=0.266 Sum_probs=68.9
Q ss_pred HHHHHhccccccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeeccceehhhhccch-----hhHHhHH
Q 003795 431 EEIVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGA-----SRVRSLY 503 (795)
Q Consensus 431 ~~lv~~~~~~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~se~~~~~~g~~~-----~~l~~lf 503 (795)
+++...|.+. .+...++.+..| +.|+||||+|||||+++|+|.+.+..+.+... ..-.|+.+.. ..+...+
T Consensus 344 ~~ls~~~~~~-~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-~~i~y~~Q~~~~~~~~tv~e~l 421 (590)
T PRK13409 344 PDLTKKLGDF-SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-LKISYKPQYIKPDYDGTVEDLL 421 (590)
T ss_pred cceEEEECCE-EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe-eeEEEecccccCCCCCcHHHHH
Confidence 3333344332 256667777777 88999999999999999999887766665432 1111111111 1111111
Q ss_pred HHHHhcCCceeEhHHH-HHHh----hhccCCCCCCcchHHHHHHHHHHhhhcccCCCcEEEE-eccCCCC
Q 003795 504 QEAKDNAPSVVFIDEL-DAVG----RERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITI-ASTNRPD 567 (795)
Q Consensus 504 ~~ar~~~p~Il~IDEI-D~l~----~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVI-atTN~~d 567 (795)
.........-...+++ +.++ ..+....=|||++.+..+...+ ....+++++ .+|+..|
T Consensus 422 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL------~~~p~llLLDEPt~~LD 485 (590)
T PRK13409 422 RSITDDLGSSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACL------SRDADLYLLDEPSAHLD 485 (590)
T ss_pred HHHhhhcChHHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHH------hcCCCEEEEeCCccCCC
Confidence 1111100000011111 1110 0111122399999999988877 456677777 7777543
No 405
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.36 E-value=0.00016 Score=78.36 Aligned_cols=43 Identities=23% Similarity=0.275 Sum_probs=36.6
Q ss_pred ccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEee
Q 003795 441 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 483 (795)
Q Consensus 441 ~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is 483 (795)
..++++++.+..| +.|+||||+|||||+++|+|.+.+.-+.+.
T Consensus 21 ~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~ 65 (287)
T PRK13637 21 KALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKII 65 (287)
T ss_pred ceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEE
Confidence 4677888888888 999999999999999999998877666553
No 406
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=0.0013 Score=68.18 Aligned_cols=36 Identities=28% Similarity=0.529 Sum_probs=32.0
Q ss_pred ccccccCcccCCc--eEEECCCCCchhHHHHHhhhhcc
Q 003795 441 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAG 476 (795)
Q Consensus 441 ~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~ 476 (795)
++++.+++.+..| -.|.||||+|||||+++|+|.-+
T Consensus 18 eILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~ 55 (251)
T COG0396 18 EILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPK 55 (251)
T ss_pred hhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 6778889999988 78999999999999999999753
No 407
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=97.33 E-value=7e-05 Score=78.80 Aligned_cols=51 Identities=24% Similarity=0.270 Sum_probs=40.7
Q ss_pred HhccccccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeecc
Q 003795 435 KFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 485 (795)
Q Consensus 435 ~~~~~~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~s 485 (795)
..|.....+.++++.++.| ++|+||||+|||||+++|+|...+..+++...
T Consensus 11 ~~~~~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~ 63 (241)
T PRK10895 11 KAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIID 63 (241)
T ss_pred EEeCCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEC
Confidence 3344445778888998887 89999999999999999999887766666543
No 408
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.33 E-value=0.00014 Score=67.71 Aligned_cols=30 Identities=43% Similarity=0.793 Sum_probs=26.1
Q ss_pred eEEECCCCCchhHHHHHhhhhccccEEEee
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 483 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el~~~~~~is 483 (795)
|+|.||||+||||+++.||..++.+++.++
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d 31 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMD 31 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEec
Confidence 689999999999999999999887765443
No 409
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.33 E-value=0.00019 Score=66.15 Aligned_cols=25 Identities=44% Similarity=0.752 Sum_probs=21.6
Q ss_pred eEEECCCCCchhHHHHHhhhhcccc
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEAGVN 478 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el~~~ 478 (795)
|.|+||||+|||+|++.|+..+...
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~ 25 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKH 25 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHH
Confidence 5799999999999999999876543
No 410
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.33 E-value=0.00024 Score=75.38 Aligned_cols=83 Identities=19% Similarity=0.121 Sum_probs=56.5
Q ss_pred cccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeeccce--eh--------h-----------------hh
Q 003795 442 MYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQF--VE--------I-----------------YV 492 (795)
Q Consensus 442 ~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~se~--~~--------~-----------------~~ 492 (795)
...++++.+..| +.|+|.+||||||++|+|.+...+..+.|....- .. . |.
T Consensus 28 avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryP 107 (268)
T COG4608 28 AVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYP 107 (268)
T ss_pred EecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCC
Confidence 345677888887 8899999999999999999999888777654421 00 0 11
Q ss_pred ccchhh--HHhHHHHHHhcCCceeEhHHHHHHhh
Q 003795 493 GVGASR--VRSLYQEAKDNAPSVVFIDELDAVGR 524 (795)
Q Consensus 493 g~~~~~--l~~lf~~ar~~~p~Il~IDEID~l~~ 524 (795)
.+-.+. -+-.+..|....|.+++.||.-+.+.
T Consensus 108 helSGGQrQRi~IARALal~P~liV~DEpvSaLD 141 (268)
T COG4608 108 HELSGGQRQRIGIARALALNPKLIVADEPVSALD 141 (268)
T ss_pred cccCchhhhhHHHHHHHhhCCcEEEecCchhhcc
Confidence 111111 12244556667899999999877653
No 411
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.33 E-value=0.00023 Score=73.91 Aligned_cols=55 Identities=20% Similarity=0.348 Sum_probs=44.3
Q ss_pred HHHHHhc-cccccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeecc
Q 003795 431 EEIVKFF-THGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 485 (795)
Q Consensus 431 ~~lv~~~-~~~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~s 485 (795)
+++.+.| .....+.+.++.++.| +.|+||+|+|||||+|+|++..++..+++-..
T Consensus 7 ~nl~k~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~ 64 (258)
T COG3638 7 KNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFN 64 (258)
T ss_pred eeeeeecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEec
Confidence 4455556 5666778899999998 99999999999999999999877776665443
No 412
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=97.33 E-value=6.9e-05 Score=77.95 Aligned_cols=45 Identities=29% Similarity=0.296 Sum_probs=38.1
Q ss_pred ccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeecc
Q 003795 441 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 485 (795)
Q Consensus 441 ~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~s 485 (795)
..+.++++.++.| +.|+||||+|||||+++|+|...+..+++...
T Consensus 19 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~ 65 (228)
T cd03257 19 KALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFD 65 (228)
T ss_pred eeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEC
Confidence 4678888998888 99999999999999999999887776666543
No 413
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.33 E-value=0.00035 Score=75.19 Aligned_cols=94 Identities=21% Similarity=0.338 Sum_probs=56.1
Q ss_pred CceEEECCCCCchhHHHHHhhhhccccEEEeecc-----------ceehh--hhcc-----------chhhHHhHHHHHH
Q 003795 452 GGILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS-----------QFVEI--YVGV-----------GASRVRSLYQEAK 507 (795)
Q Consensus 452 ~giLL~GPpGtGKTtLakaLA~el~~~~~~is~s-----------e~~~~--~~g~-----------~~~~l~~lf~~ar 507 (795)
.+++|.||||+|||||+++|++.+.+..+.+... ++... ++.+ .......++..++
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~~~~~i~ 191 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKAEGMMMLIR 191 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccchHHHHHHHHHH
Confidence 4589999999999999999999886543332211 11100 1101 0111234566677
Q ss_pred hcCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcccCCCcEEEEeccCCC
Q 003795 508 DNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRP 566 (795)
Q Consensus 508 ~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVIatTN~~ 566 (795)
...|.++++||+.. ...+..++..+. .+..+|++|+..
T Consensus 192 ~~~P~villDE~~~----------------~e~~~~l~~~~~-----~G~~vI~ttH~~ 229 (270)
T TIGR02858 192 SMSPDVIVVDEIGR----------------EEDVEALLEALH-----AGVSIIATAHGR 229 (270)
T ss_pred hCCCCEEEEeCCCc----------------HHHHHHHHHHHh-----CCCEEEEEechh
Confidence 78999999999521 113444444442 245678887754
No 414
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=97.33 E-value=6.8e-05 Score=77.68 Aligned_cols=45 Identities=22% Similarity=0.167 Sum_probs=38.0
Q ss_pred cccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeec
Q 003795 440 GEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (795)
Q Consensus 440 ~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (795)
...+.++++.+..| ++|+||||+|||||+++|+|...+..+.+..
T Consensus 15 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~ 61 (220)
T cd03263 15 KPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYI 61 (220)
T ss_pred ceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE
Confidence 34678888888887 8899999999999999999988776666654
No 415
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=97.32 E-value=0.0004 Score=84.58 Aligned_cols=56 Identities=18% Similarity=0.207 Sum_probs=43.4
Q ss_pred HHHHHHhcc-ccccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeecc
Q 003795 430 LEEIVKFFT-HGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 485 (795)
Q Consensus 430 l~~lv~~~~-~~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~s 485 (795)
++++...|. ....++++++.+++| +.|+||+|+|||||++.|+|...+.-+.+...
T Consensus 476 ~~~vsf~y~~~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~id 534 (708)
T TIGR01193 476 INDVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLN 534 (708)
T ss_pred EEEEEEEcCCCCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEC
Confidence 344444453 345788899999988 99999999999999999999887776665443
No 416
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.32 E-value=0.00014 Score=69.36 Aligned_cols=42 Identities=33% Similarity=0.444 Sum_probs=34.3
Q ss_pred cccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeecc
Q 003795 444 RRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 485 (795)
Q Consensus 444 ~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~s 485 (795)
+++++.++.| ++|+||||+|||||+++|++...+..+.+...
T Consensus 2 ~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~ 45 (137)
T PF00005_consen 2 KNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILIN 45 (137)
T ss_dssp EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEET
T ss_pred CceEEEEcCCCEEEEEccCCCccccceeeecccccccccccccc
Confidence 3456677766 89999999999999999999988777776443
No 417
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=97.31 E-value=0.00037 Score=85.00 Aligned_cols=56 Identities=16% Similarity=0.229 Sum_probs=43.1
Q ss_pred HHHHHHHhccc---cccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeec
Q 003795 429 ELEEIVKFFTH---GEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (795)
Q Consensus 429 ~l~~lv~~~~~---~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (795)
+++++...|.+ ...++++++.+++| +.|+||+|+|||||++.|++...+.-+.|..
T Consensus 480 ~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i 540 (711)
T TIGR00958 480 EFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLL 540 (711)
T ss_pred EEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEE
Confidence 34444444532 34678899999988 9999999999999999999998776665543
No 418
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.30 E-value=7.4e-05 Score=78.44 Aligned_cols=45 Identities=24% Similarity=0.369 Sum_probs=37.5
Q ss_pred cccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeec
Q 003795 440 GEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (795)
Q Consensus 440 ~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (795)
...+.++++.+..| ++|+||||+|||||+++|+|...+..+.+..
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~ 60 (241)
T cd03256 14 KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLI 60 (241)
T ss_pred cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEE
Confidence 45678888888888 8999999999999999999988766665543
No 419
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=97.30 E-value=7.9e-05 Score=78.24 Aligned_cols=48 Identities=21% Similarity=0.232 Sum_probs=39.5
Q ss_pred ccccccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeec
Q 003795 437 FTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (795)
Q Consensus 437 ~~~~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (795)
|.+...+.++++.+..| ++|+||||+|||||+++|+|...+..+.+..
T Consensus 11 ~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~ 60 (236)
T TIGR03864 11 YGARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISV 60 (236)
T ss_pred ECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEE
Confidence 44445678888888887 8899999999999999999988777676654
No 420
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=97.30 E-value=5.6e-05 Score=78.77 Aligned_cols=48 Identities=21% Similarity=0.333 Sum_probs=38.6
Q ss_pred ccccccccccCcccCCc--eEEECCCCCchhHHHHHhhhhc-----cccEEEeec
Q 003795 437 FTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEA-----GVNFFSISA 484 (795)
Q Consensus 437 ~~~~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el-----~~~~~~is~ 484 (795)
|.....+.++++.+..| +.|+||||+|||||+++|+|.. .+.-+.+..
T Consensus 10 ~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~ 64 (227)
T cd03260 10 YGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLL 64 (227)
T ss_pred cCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEE
Confidence 33345678888888888 8899999999999999999998 666666554
No 421
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.29 E-value=0.00024 Score=74.67 Aligned_cols=42 Identities=24% Similarity=0.420 Sum_probs=34.8
Q ss_pred cccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEee
Q 003795 442 MYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 483 (795)
Q Consensus 442 ~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is 483 (795)
.+.++++.+..| ++|+||||+|||||+++|++...+.-+.+.
T Consensus 14 ~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~ 57 (235)
T cd03299 14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKIL 57 (235)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEE
Confidence 467778888877 899999999999999999998776655543
No 422
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=97.29 E-value=8.6e-05 Score=78.50 Aligned_cols=52 Identities=23% Similarity=0.330 Sum_probs=40.9
Q ss_pred HHHhccccccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeec
Q 003795 433 IVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (795)
Q Consensus 433 lv~~~~~~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (795)
+...|.+...+.++++.+..| ++|+||||+|||||+++|+|...+.-+.+..
T Consensus 9 l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 62 (250)
T PRK11264 9 LVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRV 62 (250)
T ss_pred eEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEE
Confidence 333444445778888888887 8899999999999999999988766666654
No 423
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.29 E-value=0.0011 Score=69.26 Aligned_cols=72 Identities=25% Similarity=0.304 Sum_probs=40.0
Q ss_pred CCceEEECCCCCchhHHHHHhhhhccccEEEeeccce-------ehh---hhccchhhHHhHHHHHH--hcCCceeEhHH
Q 003795 451 PGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQF-------VEI---YVGVGASRVRSLYQEAK--DNAPSVVFIDE 518 (795)
Q Consensus 451 ~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~se~-------~~~---~~g~~~~~l~~lf~~ar--~~~p~Il~IDE 518 (795)
|.-++|||+||+||||+|+.+++. .-++..+.+.. ... -.......+...+..+. ...+..|+||.
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~~~--~~~~~~d~~~~~l~g~~~~~v~~~d~~~~~~~~~d~l~~~~~~~~~ydtVVIDs 89 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLPGK--TLVLSFDMSSKVLIGDENVDIADHDDMPPIQAMVEFYVMQNIQAVKYDNIVIDN 89 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcCCC--CEEEeccccchhccCCCCCceeecCCCCCHHHHHHHHHHHHhccccCCEEEEec
Confidence 344999999999999999999853 22222222210 000 00001112223333322 24478999999
Q ss_pred HHHHhh
Q 003795 519 LDAVGR 524 (795)
Q Consensus 519 ID~l~~ 524 (795)
|+.+..
T Consensus 90 I~~l~~ 95 (220)
T TIGR01618 90 ISALQN 95 (220)
T ss_pred HHHHHH
Confidence 988754
No 424
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.28 E-value=0.0013 Score=84.40 Aligned_cols=175 Identities=21% Similarity=0.260 Sum_probs=91.7
Q ss_pred ccccCccCchHHHHHHHHHHHhccccccccccCcccCCceEEECCCCCchhHHHHHhhhhccccE---EEeecc---cee
Q 003795 415 VKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNF---FSISAS---QFV 488 (795)
Q Consensus 415 ~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el~~~~---~~is~s---e~~ 488 (795)
..+++..|.+..+.++..++.. +..-.+-+.|+|++|+||||||+++++.+...| +.++.. ...
T Consensus 181 ~~~~~~vG~~~~l~~l~~lL~l----------~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~~~ 250 (1153)
T PLN03210 181 NDFEDFVGIEDHIAKMSSLLHL----------ESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISKSM 250 (1153)
T ss_pred cccccccchHHHHHHHHHHHcc----------ccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccccccch
Confidence 3466778888777666655431 111122389999999999999999988764332 111110 000
Q ss_pred hhhhcc-------c----hhhHH-------------hHHHHHHhcCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHH
Q 003795 489 EIYVGV-------G----ASRVR-------------SLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQL 544 (795)
Q Consensus 489 ~~~~g~-------~----~~~l~-------------~lf~~ar~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~L 544 (795)
..+... . ...+. ..........+.++++|+++... .+..+
T Consensus 251 ~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~~~----------------~l~~L 314 (1153)
T PLN03210 251 EIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQD----------------VLDAL 314 (1153)
T ss_pred hhcccccccccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCCHH----------------HHHHH
Confidence 000000 0 00000 01111223345578888875421 33444
Q ss_pred HHhhhcccCCCcEEEEeccCCCCCCCccccCCCcccceecCCCCCHHHHHHHHHHHHccCCCCChhhH----HHHHhhCC
Q 003795 545 LVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDY----LAVASMTD 620 (795)
Q Consensus 545 L~~ld~~~~~~~VlVIatTN~~d~LdpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~~~~~d~dl----~~LA~~t~ 620 (795)
....+.+ . .+..||.||.+...+ +....++++.++.|+.++-.++|..++-.....+ .++ ..++..+.
T Consensus 315 ~~~~~~~-~-~GsrIIiTTrd~~vl-----~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~-~~~~~l~~~iv~~c~ 386 (1153)
T PLN03210 315 AGQTQWF-G-SGSRIIVITKDKHFL-----RAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPP-DGFMELASEVALRAG 386 (1153)
T ss_pred HhhCccC-C-CCcEEEEEeCcHHHH-----HhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHHhC
Confidence 3323322 2 233455566654332 2224677899999999999999998775433222 122 23556666
Q ss_pred CCc
Q 003795 621 GMV 623 (795)
Q Consensus 621 G~s 623 (795)
|..
T Consensus 387 GLP 389 (1153)
T PLN03210 387 NLP 389 (1153)
T ss_pred CCc
Confidence 654
No 425
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=97.28 E-value=0.00067 Score=80.69 Aligned_cols=56 Identities=18% Similarity=0.255 Sum_probs=43.3
Q ss_pred HHHHHHhccc--cccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeecc
Q 003795 430 LEEIVKFFTH--GEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 485 (795)
Q Consensus 430 l~~lv~~~~~--~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~s 485 (795)
++++...|.+ ...++++++.++.| +.|+||+|+|||||++.|++...+.-+.+...
T Consensus 341 ~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~ 400 (574)
T PRK11160 341 LNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLN 400 (574)
T ss_pred EEEEEEECCCCCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEC
Confidence 4444444532 24678889999988 99999999999999999999987776665544
No 426
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=97.28 E-value=0.00019 Score=73.93 Aligned_cols=49 Identities=18% Similarity=0.311 Sum_probs=38.9
Q ss_pred ccccccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeecc
Q 003795 437 FTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 485 (795)
Q Consensus 437 ~~~~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~s 485 (795)
|.....+.++++.+..| ++|.||||+|||||+++|+|...+..+.+...
T Consensus 10 ~~~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~ 60 (213)
T cd03262 10 FGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIID 60 (213)
T ss_pred ECCeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEC
Confidence 33344677788888877 89999999999999999999887766666543
No 427
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.26 E-value=0.00065 Score=80.19 Aligned_cols=134 Identities=21% Similarity=0.282 Sum_probs=81.6
Q ss_pred HHHHHHHHHhcccc---ccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeeccc--eehh---------
Q 003795 427 RLELEEIVKFFTHG---EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQ--FVEI--------- 490 (795)
Q Consensus 427 ~~~l~~lv~~~~~~---~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~se--~~~~--------- 490 (795)
.++.+++...|..+ .+++++++.++.| +.|+||+|.||||++..|-+..++..++|.... +.+.
T Consensus 465 ~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~I 544 (716)
T KOG0058|consen 465 VIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKI 544 (716)
T ss_pred eEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHe
Confidence 34445555666533 4789999999988 999999999999999999998888777664432 2211
Q ss_pred -hhccchhhH-HhHHHHHHhcCCceeEhHHHHHHhh--------------------hccCCCCCCcchHHHHHHHHHHhh
Q 003795 491 -YVGVGASRV-RSLYQEAKDNAPSVVFIDELDAVGR--------------------ERGLIKGSGGQERDATLNQLLVCL 548 (795)
Q Consensus 491 -~~g~~~~~l-~~lf~~ar~~~p~Il~IDEID~l~~--------------------~r~~~~~Sgge~~r~~l~~LL~~l 548 (795)
++||.+--. ..+-++.....+ -.-.|||...+. .++ ..-|||++.|..++..|
T Consensus 545 g~V~QEPvLFs~sI~eNI~YG~~-~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG-~qLSGGQKQRIAIARAL--- 619 (716)
T KOG0058|consen 545 GLVGQEPVLFSGSIRENIAYGLD-NATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKG-SQLSGGQKQRIAIARAL--- 619 (716)
T ss_pred eeeeccceeecccHHHHHhcCCC-CCCHHHHHHHHHHhChHHHHHhCccccccccCCcc-ccccchHHHHHHHHHHH---
Confidence 233322111 122222222222 112233332211 111 11299999999988877
Q ss_pred hcccCCCcEEEE-eccCCCCC
Q 003795 549 DGFEGRGNVITI-ASTNRPDI 568 (795)
Q Consensus 549 d~~~~~~~VlVI-atTN~~d~ 568 (795)
..++.|+++ .||.-.|.
T Consensus 620 ---lr~P~VLILDEATSALDa 637 (716)
T KOG0058|consen 620 ---LRNPRVLILDEATSALDA 637 (716)
T ss_pred ---hcCCCEEEEechhhhcch
Confidence 677888888 77766654
No 428
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=97.26 E-value=8.2e-05 Score=78.89 Aligned_cols=49 Identities=20% Similarity=0.294 Sum_probs=39.5
Q ss_pred ccccccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeecc
Q 003795 437 FTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 485 (795)
Q Consensus 437 ~~~~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~s 485 (795)
|.....+.++++.++.| ++|.||||+|||||+++|+|...+..+.+...
T Consensus 13 ~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~ 63 (253)
T TIGR02323 13 YGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYI 63 (253)
T ss_pred eCCceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEe
Confidence 43334577888888887 89999999999999999999987776666543
No 429
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=97.26 E-value=0.00045 Score=82.34 Aligned_cols=53 Identities=15% Similarity=0.216 Sum_probs=40.8
Q ss_pred HHHHHhccc-cccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEee
Q 003795 431 EEIVKFFTH-GEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 483 (795)
Q Consensus 431 ~~lv~~~~~-~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is 483 (795)
+++...|.. ...++++++.+++| ++|+|++|+|||||++.|+|...+.-+.+.
T Consensus 338 ~~vsf~y~~~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~ 393 (588)
T PRK13657 338 DDVSFSYDNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRIL 393 (588)
T ss_pred EEEEEEeCCCCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEE
Confidence 344444432 34688889999888 999999999999999999998877655543
No 430
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=97.26 E-value=0.00019 Score=74.89 Aligned_cols=49 Identities=31% Similarity=0.431 Sum_probs=39.9
Q ss_pred ccccccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeecc
Q 003795 437 FTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 485 (795)
Q Consensus 437 ~~~~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~s 485 (795)
|.....+.++++.+..| ++|+||||+|||||+++|+|...+..+++...
T Consensus 10 ~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~ 60 (230)
T TIGR03410 10 YGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLD 60 (230)
T ss_pred eCCeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEEC
Confidence 33345677888888887 99999999999999999999987776666544
No 431
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=97.24 E-value=8.8e-05 Score=79.61 Aligned_cols=50 Identities=22% Similarity=0.382 Sum_probs=40.5
Q ss_pred HhccccccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeec
Q 003795 435 KFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (795)
Q Consensus 435 ~~~~~~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (795)
..|.....+.++++.++.| ++|+||||+|||||+++|+|...+..+.+..
T Consensus 15 ~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 66 (269)
T PRK11831 15 FTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILF 66 (269)
T ss_pred EEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEE
Confidence 3344445678889999888 8999999999999999999998776666654
No 432
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=97.24 E-value=4.9e-05 Score=80.60 Aligned_cols=54 Identities=19% Similarity=0.150 Sum_probs=42.3
Q ss_pred HHHHhccccccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeecc
Q 003795 432 EIVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 485 (795)
Q Consensus 432 ~lv~~~~~~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~s 485 (795)
++...|.....+.++++.+..| ++|+||||+|||||+++|+|...+..+++...
T Consensus 10 ~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~ 65 (255)
T PRK11300 10 GLMMRFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLR 65 (255)
T ss_pred eEEEEECCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEEC
Confidence 3333444445778888888877 88999999999999999999987777766554
No 433
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=97.24 E-value=7.8e-05 Score=78.37 Aligned_cols=49 Identities=27% Similarity=0.393 Sum_probs=38.5
Q ss_pred hccccccccccCcccCCc--eEEECCCCCchhHHHHHhhhhc--cccEEEeec
Q 003795 436 FFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEA--GVNFFSISA 484 (795)
Q Consensus 436 ~~~~~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el--~~~~~~is~ 484 (795)
.|.....+.++++.++.| ++|+||||+|||||+++|+|.. .+..+.+..
T Consensus 9 ~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~ 61 (243)
T TIGR01978 9 SVEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILF 61 (243)
T ss_pred EECCEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEE
Confidence 344445678889999888 8899999999999999999984 455555543
No 434
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=97.24 E-value=0.00021 Score=72.55 Aligned_cols=57 Identities=21% Similarity=0.274 Sum_probs=48.7
Q ss_pred HHHHHHHhccccccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeecc
Q 003795 429 ELEEIVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 485 (795)
Q Consensus 429 ~l~~lv~~~~~~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~s 485 (795)
.++++.+.|+.+....+.++.+..| +.|.||||.||||....+.|...+..+.+-..
T Consensus 6 ~a~~l~K~y~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld 64 (243)
T COG1137 6 VAENLAKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLD 64 (243)
T ss_pred EehhhhHhhCCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEEC
Confidence 3467888999999999999999988 88999999999999999999887776665443
No 435
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.24 E-value=0.0013 Score=65.85 Aligned_cols=32 Identities=31% Similarity=0.392 Sum_probs=24.3
Q ss_pred eEEECCCCCchhHHHHHhhhhc---cccEEEeecc
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEA---GVNFFSISAS 485 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el---~~~~~~is~s 485 (795)
+++.||||+|||+|+..++... +.+.+.++..
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e 36 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLE 36 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECC
Confidence 6899999999999998776533 5566666553
No 436
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=97.24 E-value=0.00059 Score=77.57 Aligned_cols=129 Identities=20% Similarity=0.265 Sum_probs=70.6
Q ss_pred HHHHhccccccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEee--c-cceehhhhccchh--hHHhHHH
Q 003795 432 EIVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSIS--A-SQFVEIYVGVGAS--RVRSLYQ 504 (795)
Q Consensus 432 ~lv~~~~~~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is--~-se~~~~~~g~~~~--~l~~lf~ 504 (795)
++.-+|+...++....+.+.+| ..|+|+||+|||||+|+||.. +...+.+. + +.++......... ...++..
T Consensus 85 ~fdLa~G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~~-~v~~f~veqE~~g~~t~~~~~~l~~D~~~~dfl~ 163 (582)
T KOG0062|consen 85 NFDLAYGGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIANG-QVSGFHVEQEVRGDDTEALQSVLESDTERLDFLA 163 (582)
T ss_pred eeeeeecchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHhc-CcCccCchhheeccchHHHhhhhhccHHHHHHHH
Confidence 4444667777778888888877 999999999999999999981 11111110 0 0111100000000 0011111
Q ss_pred HHHhcCCceeEhHHHHH-HhhhccCCCC---------CCcchHHHHHHHHHHhhhcccCCCcEEEE-eccCCCCC
Q 003795 505 EAKDNAPSVVFIDELDA-VGRERGLIKG---------SGGQERDATLNQLLVCLDGFEGRGNVITI-ASTNRPDI 568 (795)
Q Consensus 505 ~ar~~~p~Il~IDEID~-l~~~r~~~~~---------Sgge~~r~~l~~LL~~ld~~~~~~~VlVI-atTN~~d~ 568 (795)
.-..... -+-++||-. ++...+|... |||=+.+..++..+ ...+.++++ .+||++|.
T Consensus 164 ~e~~l~~-~~~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAl------f~~pDlLLLDEPTNhLDv 231 (582)
T KOG0062|consen 164 EEKELLA-GLTLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARAL------FAKPDLLLLDEPTNHLDV 231 (582)
T ss_pred hhhhhhc-cchHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHH------hcCCCEEeecCCcccchh
Confidence 1000000 113455544 4333332221 88888888888776 556677777 99999874
No 437
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=97.23 E-value=0.00021 Score=76.11 Aligned_cols=48 Identities=25% Similarity=0.392 Sum_probs=38.9
Q ss_pred ccccccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeec
Q 003795 437 FTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (795)
Q Consensus 437 ~~~~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (795)
|.+...+.++++.++.| ++|+||||+|||||+++|+|...+..+++..
T Consensus 11 ~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 60 (255)
T PRK11248 11 YGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITL 60 (255)
T ss_pred eCCeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE
Confidence 33344678888888888 8899999999999999999988776666544
No 438
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=97.23 E-value=6.4e-05 Score=79.97 Aligned_cols=55 Identities=18% Similarity=0.234 Sum_probs=42.9
Q ss_pred HHHHHhccccccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeecc
Q 003795 431 EEIVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 485 (795)
Q Consensus 431 ~~lv~~~~~~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~s 485 (795)
+++...|.+...+.++++.+..| +.|+||||+|||||+++|+|...+..+++...
T Consensus 9 ~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~ 65 (257)
T PRK10619 9 IDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVN 65 (257)
T ss_pred eeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEC
Confidence 34444454455778888998888 88999999999999999999987766666543
No 439
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.23 E-value=0.0012 Score=74.32 Aligned_cols=71 Identities=27% Similarity=0.475 Sum_probs=48.7
Q ss_pred eEEECCCCCchhHHHHHhhhhc---cccEEEeeccceehh------hhcc--------chhhHHhHHHHHHhcCCceeEh
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEI------YVGV--------GASRVRSLYQEAKDNAPSVVFI 516 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el---~~~~~~is~se~~~~------~~g~--------~~~~l~~lf~~ar~~~p~Il~I 516 (795)
++|.|+||+|||||+..+|... +...++++..+-... .+|. ....+..+.+.+....|.+++|
T Consensus 85 vLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~~~~~lVVI 164 (372)
T cd01121 85 ILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIEELKPDLVII 164 (372)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHHhcCCcEEEE
Confidence 8999999999999999998754 345666665442221 0111 1123455666677778999999
Q ss_pred HHHHHHhh
Q 003795 517 DELDAVGR 524 (795)
Q Consensus 517 DEID~l~~ 524 (795)
|+|..+..
T Consensus 165 DSIq~l~~ 172 (372)
T cd01121 165 DSIQTVYS 172 (372)
T ss_pred cchHHhhc
Confidence 99988753
No 440
>PRK10908 cell division protein FtsE; Provisional
Probab=97.22 E-value=0.0001 Score=76.58 Aligned_cols=46 Identities=24% Similarity=0.260 Sum_probs=38.2
Q ss_pred cccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeecc
Q 003795 440 GEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 485 (795)
Q Consensus 440 ~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~s 485 (795)
...+.++++.+..| ++|+||||+|||||+++|++...+..+++...
T Consensus 15 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~ 62 (222)
T PRK10908 15 RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFS 62 (222)
T ss_pred CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEC
Confidence 34677888888877 88999999999999999999987777766543
No 441
>PRK08118 topology modulation protein; Reviewed
Probab=97.22 E-value=0.00043 Score=69.15 Aligned_cols=32 Identities=28% Similarity=0.502 Sum_probs=28.7
Q ss_pred ceEEECCCCCchhHHHHHhhhhccccEEEeec
Q 003795 453 GILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (795)
Q Consensus 453 giLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (795)
.|+++||||+|||||++.|+..++.+++.++.
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~ 34 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDA 34 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecch
Confidence 38999999999999999999999998877763
No 442
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=97.22 E-value=9.7e-05 Score=78.32 Aligned_cols=49 Identities=18% Similarity=0.295 Sum_probs=39.7
Q ss_pred ccccccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeecc
Q 003795 437 FTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 485 (795)
Q Consensus 437 ~~~~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~s 485 (795)
|.....+.++++.+..| ++|+||||+|||||+++|+|...+..+.+...
T Consensus 10 ~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~ 60 (252)
T TIGR03005 10 FGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVE 60 (252)
T ss_pred eCCeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEC
Confidence 33445677888888887 89999999999999999999887776766543
No 443
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.22 E-value=0.00021 Score=77.05 Aligned_cols=42 Identities=19% Similarity=0.203 Sum_probs=35.8
Q ss_pred cccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEee
Q 003795 442 MYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 483 (795)
Q Consensus 442 ~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is 483 (795)
.+.++++.+..| +.|+||||+|||||+++|+|...+..+.+.
T Consensus 22 ~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~ 65 (277)
T PRK13642 22 QLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVK 65 (277)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEE
Confidence 577888888888 999999999999999999998876655553
No 444
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=97.22 E-value=0.0009 Score=68.68 Aligned_cols=20 Identities=25% Similarity=0.458 Sum_probs=19.1
Q ss_pred eEEECCCCCchhHHHHHhhh
Q 003795 454 ILLCGPPGVGKTLLAKAVAG 473 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~ 473 (795)
++|+||||+|||||+++|++
T Consensus 32 ~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 32 LLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred EEEECCCCCccHHHHHHHHH
Confidence 89999999999999999994
No 445
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.21 E-value=0.00037 Score=71.50 Aligned_cols=66 Identities=26% Similarity=0.455 Sum_probs=41.0
Q ss_pred eEEECCCCCchhHHHHHhhhhcccc----EEEeec-cceehh---------hhccchhhHHhHHHHHHhcCCceeEhHHH
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEAGVN----FFSISA-SQFVEI---------YVGVGASRVRSLYQEAKDNAPSVVFIDEL 519 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el~~~----~~~is~-se~~~~---------~~g~~~~~l~~lf~~ar~~~p~Il~IDEI 519 (795)
++|+||+|+||||+++++++.+..+ .+.+.- .++... -+|.....+...+..+....|+++++||+
T Consensus 4 ilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~~pd~ii~gEi 83 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALRQDPDVILVGEM 83 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHhcCCcCEEEEcCC
Confidence 8999999999999999998877432 122211 111100 11222223444555666678999999998
No 446
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=97.21 E-value=0.00027 Score=74.47 Aligned_cols=49 Identities=18% Similarity=0.270 Sum_probs=39.8
Q ss_pred ccccccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeecc
Q 003795 437 FTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 485 (795)
Q Consensus 437 ~~~~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~s 485 (795)
|.....+.++++.+..| +.|.||||+|||||+++|+|...+..+.+...
T Consensus 12 ~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~ 62 (242)
T PRK11124 12 YGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIA 62 (242)
T ss_pred ECCeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEC
Confidence 33345678888888887 89999999999999999999887776766543
No 447
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=97.21 E-value=0.00034 Score=78.14 Aligned_cols=40 Identities=25% Similarity=0.326 Sum_probs=33.0
Q ss_pred ccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeec
Q 003795 445 RRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (795)
Q Consensus 445 ~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (795)
++++.+..| +.|+||||+|||||+++|+|...+..+.+..
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~ 57 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVL 57 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 567777766 8999999999999999999988776665543
No 448
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.21 E-value=0.00032 Score=75.65 Aligned_cols=135 Identities=24% Similarity=0.389 Sum_probs=70.3
Q ss_pred ceEEECCCCCchhHHHHHhhhhcccc---EEEeeccceehhhhccchhhHHhHHHHH----H-------hcCCceeEhHH
Q 003795 453 GILLCGPPGVGKTLLAKAVAGEAGVN---FFSISASQFVEIYVGVGASRVRSLYQEA----K-------DNAPSVVFIDE 518 (795)
Q Consensus 453 giLL~GPpGtGKTtLakaLA~el~~~---~~~is~se~~~~~~g~~~~~l~~lf~~a----r-------~~~p~Il~IDE 518 (795)
.++|+||+|||||++++.....+... ...+.++..... ..+..+.+.. + .....|+|||+
T Consensus 35 pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~Tts------~~~q~~ie~~l~k~~~~~~gP~~~k~lv~fiDD 108 (272)
T PF12775_consen 35 PVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQTTS------NQLQKIIESKLEKRRGRVYGPPGGKKLVLFIDD 108 (272)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTHHH------HHHHHCCCTTECECTTEEEEEESSSEEEEEEET
T ss_pred cEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCCCH------HHHHHHHhhcEEcCCCCCCCCCCCcEEEEEecc
Confidence 48999999999999998877665432 223444332111 1111111100 0 11235899999
Q ss_pred HHHHhhhccCCCCCCcchHHHHHHHHHHhhhcccCC--------CcEEEEeccCCCC---CCCccccCCCcccceecCCC
Q 003795 519 LDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGR--------GNVITIASTNRPD---ILDPALVRPGRFDRKIFIPK 587 (795)
Q Consensus 519 ID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~--------~~VlVIatTN~~d---~LdpaLlrpgRFd~~I~~~~ 587 (795)
+..-..+. -|....-..+.+++.. .++.+. .++.+|+++|... .+++.|+| .|- ++.++.
T Consensus 109 lN~p~~d~-----ygtq~~iElLRQ~i~~-~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r--~f~-i~~~~~ 179 (272)
T PF12775_consen 109 LNMPQPDK-----YGTQPPIELLRQLIDY-GGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLR--HFN-ILNIPY 179 (272)
T ss_dssp TT-S---T-----TS--HHHHHHHHHHHC-SEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHT--TEE-EEE---
T ss_pred cCCCCCCC-----CCCcCHHHHHHHHHHh-cCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhh--heE-EEEecC
Confidence 86544332 1222222233333321 122221 3578888887643 36777777 554 889999
Q ss_pred CCHHHHHHHHHHHHc
Q 003795 588 PGLIGRMEILKVHAR 602 (795)
Q Consensus 588 Pd~~eR~~Il~~~l~ 602 (795)
|+.+....|+...+.
T Consensus 180 p~~~sl~~If~~il~ 194 (272)
T PF12775_consen 180 PSDESLNTIFSSILQ 194 (272)
T ss_dssp -TCCHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHh
Confidence 999999888876654
No 449
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=97.20 E-value=0.0001 Score=77.54 Aligned_cols=50 Identities=20% Similarity=0.283 Sum_probs=39.9
Q ss_pred hccccccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeecc
Q 003795 436 FFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 485 (795)
Q Consensus 436 ~~~~~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~s 485 (795)
.|.....+.++++.+..| +.|.||||+|||||+++|+|...+..+.+...
T Consensus 11 ~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~ 62 (242)
T TIGR03411 11 SFDGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFG 62 (242)
T ss_pred EcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEC
Confidence 344445678888888887 88999999999999999999887766665543
No 450
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=97.20 E-value=0.00061 Score=80.09 Aligned_cols=44 Identities=30% Similarity=0.431 Sum_probs=37.8
Q ss_pred ccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeec
Q 003795 441 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (795)
Q Consensus 441 ~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (795)
..++++++.+++| +.|+||+|+|||||++.|+|...+.-+.+..
T Consensus 336 ~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~ 381 (529)
T TIGR02857 336 PALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAV 381 (529)
T ss_pred ccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEE
Confidence 4678899999988 9999999999999999999988776665543
No 451
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.19 E-value=0.00029 Score=72.14 Aligned_cols=48 Identities=27% Similarity=0.385 Sum_probs=39.5
Q ss_pred ccccccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeec
Q 003795 437 FTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (795)
Q Consensus 437 ~~~~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (795)
|.+...+.++++.+..| ++|.||||+|||||+++|+|...+..+.+..
T Consensus 11 ~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~ 60 (200)
T PRK13540 11 YHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILF 60 (200)
T ss_pred eCCeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEE
Confidence 33445778888998887 9999999999999999999988776666554
No 452
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=97.18 E-value=0.00011 Score=78.30 Aligned_cols=50 Identities=20% Similarity=0.260 Sum_probs=39.7
Q ss_pred HhccccccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeec
Q 003795 435 KFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (795)
Q Consensus 435 ~~~~~~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (795)
..|.+...+.++++.+..| ++|.||||+|||||+++|+|...+..+.+..
T Consensus 14 ~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 65 (258)
T PRK11701 14 KLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHY 65 (258)
T ss_pred EEcCCceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEE
Confidence 3343445677888888887 9999999999999999999988776666544
No 453
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.18 E-value=0.00029 Score=72.57 Aligned_cols=45 Identities=24% Similarity=0.239 Sum_probs=36.5
Q ss_pred cccccccCcccCCc-eEEECCCCCchhHHHHHhhhhccccEEEeec
Q 003795 440 GEMYRRRGVRIPGG-ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (795)
Q Consensus 440 ~~~~~~~gl~i~~g-iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (795)
...+.++++.+..| +.|.||||+|||||+++|+|...+.-+++..
T Consensus 13 ~~~l~~vs~~i~~g~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~ 58 (211)
T cd03264 13 KRALDGVSLTLGPGMYGLLGPNGAGKTTLMRILATLTPPSSGTIRI 58 (211)
T ss_pred EEEEcceeEEEcCCcEEEECCCCCCHHHHHHHHhCCCCCCccEEEE
Confidence 34667777777767 7799999999999999999988776666654
No 454
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.17 E-value=0.00038 Score=72.57 Aligned_cols=93 Identities=22% Similarity=0.204 Sum_probs=66.0
Q ss_pred HHHHHHhccccccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeeccceehhhhccchhhHHhHHHHHH
Q 003795 430 LEEIVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAK 507 (795)
Q Consensus 430 l~~lv~~~~~~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~se~~~~~~g~~~~~l~~lf~~ar 507 (795)
++++.+.|++.....++++.+|.| +.|.||||.||||+.|.|.+.+.+..++|++..---.+ ....++..+-+. |
T Consensus 5 ie~vtK~Fg~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~--~~~~rIGyLPEE-R 81 (300)
T COG4152 5 IEGVTKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQ--EIKNRIGYLPEE-R 81 (300)
T ss_pred EecchhccCceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhh--hhhhhcccChhh-h
Confidence 456778899888999999999998 78999999999999999999999988888765411100 011122222222 3
Q ss_pred hcCCceeEhHHHHHHhhh
Q 003795 508 DNAPSVVFIDELDAVGRE 525 (795)
Q Consensus 508 ~~~p~Il~IDEID~l~~~ 525 (795)
...|.+.++|.+-.++.-
T Consensus 82 GLy~k~tv~dql~yla~L 99 (300)
T COG4152 82 GLYPKMTVEDQLKYLAEL 99 (300)
T ss_pred ccCccCcHHHHHHHHHHh
Confidence 445667778887766543
No 455
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=97.17 E-value=0.00064 Score=78.63 Aligned_cols=57 Identities=23% Similarity=0.298 Sum_probs=46.3
Q ss_pred HHHHHHhcccc-ccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeeccc
Q 003795 430 LEEIVKFFTHG-EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQ 486 (795)
Q Consensus 430 l~~lv~~~~~~-~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~se 486 (795)
++++...+.+. ....++++.+++| +.|+|++|+|||||+.+|+|.+.+.-+++...+
T Consensus 323 ~~~l~~~y~~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng 382 (559)
T COG4988 323 LENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNG 382 (559)
T ss_pred ecceEEecCCCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECC
Confidence 45666666554 6778889999988 999999999999999999999987777766553
No 456
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.17 E-value=0.00028 Score=74.36 Aligned_cols=47 Identities=28% Similarity=0.376 Sum_probs=38.5
Q ss_pred ccccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeecc
Q 003795 439 HGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 485 (795)
Q Consensus 439 ~~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~s 485 (795)
....+.++++.+..| +.|+||||+|||||+++|+|...+.-+.+...
T Consensus 15 ~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~ 63 (241)
T PRK14250 15 GKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILID 63 (241)
T ss_pred CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEC
Confidence 344677888888887 88999999999999999999887766666543
No 457
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.16 E-value=0.0012 Score=67.97 Aligned_cols=85 Identities=25% Similarity=0.337 Sum_probs=56.5
Q ss_pred cccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeec--cceehhhhccchhhHHhHHHHHHhc-CCceeEh
Q 003795 442 MYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA--SQFVEIYVGVGASRVRSLYQEAKDN-APSVVFI 516 (795)
Q Consensus 442 ~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~--se~~~~~~g~~~~~l~~lf~~ar~~-~p~Il~I 516 (795)
.+..+++.++.| +.+.|.||+|||||+++|||.+.+..+.|.. .+............+..+|+..... .|. +-|
T Consensus 21 ~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~-lTi 99 (263)
T COG1101 21 ALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPE-LTI 99 (263)
T ss_pred HHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCccc-ccH
Confidence 345567788877 7899999999999999999999887666544 3433444444455567788776543 354 444
Q ss_pred HHHHHHhhhcc
Q 003795 517 DELDAVGRERG 527 (795)
Q Consensus 517 DEID~l~~~r~ 527 (795)
.|=-.+...|+
T Consensus 100 eENl~la~~Rg 110 (263)
T COG1101 100 EENLALAESRG 110 (263)
T ss_pred HHHHHHHHhcC
Confidence 44334444443
No 458
>PRK07261 topology modulation protein; Provisional
Probab=97.16 E-value=0.00059 Score=68.39 Aligned_cols=31 Identities=23% Similarity=0.411 Sum_probs=27.5
Q ss_pred eEEECCCCCchhHHHHHhhhhccccEEEeec
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (795)
|+++|+||+|||||++.|+..++.+.+..+.
T Consensus 3 i~i~G~~GsGKSTla~~l~~~~~~~~i~~D~ 33 (171)
T PRK07261 3 IAIIGYSGSGKSTLARKLSQHYNCPVLHLDT 33 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCeEecCC
Confidence 7899999999999999999998888776654
No 459
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=97.16 E-value=0.0004 Score=76.94 Aligned_cols=43 Identities=21% Similarity=0.313 Sum_probs=36.2
Q ss_pred ccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEee
Q 003795 441 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 483 (795)
Q Consensus 441 ~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is 483 (795)
..+.++++.+..| +.|+|+||+|||||+++|++.+.+..+.+.
T Consensus 35 ~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~ 79 (331)
T PRK15079 35 KAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVA 79 (331)
T ss_pred EEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEE
Confidence 3667888999888 889999999999999999998866555553
No 460
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=97.16 E-value=9.4e-05 Score=79.69 Aligned_cols=43 Identities=35% Similarity=0.453 Sum_probs=35.9
Q ss_pred hccccccccccCcccCCc--eEEECCCCCchhHHHHHhhhhcccc
Q 003795 436 FFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVN 478 (795)
Q Consensus 436 ~~~~~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~ 478 (795)
.|.+...+.++++.+..| +.|+||||+|||||+++|+|.+.+.
T Consensus 10 ~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~ 54 (272)
T PRK13547 10 ARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGG 54 (272)
T ss_pred EECCEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCc
Confidence 344455778888888887 8899999999999999999987654
No 461
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=97.16 E-value=0.00064 Score=81.04 Aligned_cols=44 Identities=23% Similarity=0.304 Sum_probs=37.8
Q ss_pred ccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeec
Q 003795 441 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (795)
Q Consensus 441 ~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (795)
..++++++.+++| ++|+|++|+|||||++.|+|...+.-+.+..
T Consensus 355 ~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i 400 (592)
T PRK10790 355 LVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRL 400 (592)
T ss_pred ceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEE
Confidence 4678889999988 9999999999999999999988776665543
No 462
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=97.16 E-value=0.0003 Score=72.45 Aligned_cols=44 Identities=27% Similarity=0.385 Sum_probs=37.2
Q ss_pred ccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeec
Q 003795 441 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (795)
Q Consensus 441 ~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (795)
..+.++++.+..| ++|+||||+|||||+++|+|...+..+.+..
T Consensus 15 ~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 60 (214)
T cd03292 15 AALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRV 60 (214)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE
Confidence 4677788888877 8899999999999999999988777666654
No 463
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.16 E-value=0.037 Score=62.17 Aligned_cols=35 Identities=29% Similarity=0.255 Sum_probs=26.8
Q ss_pred ceEEECCCCCchhHHHHHhhhhc---cccEEEeeccce
Q 003795 453 GILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQF 487 (795)
Q Consensus 453 giLL~GPpGtGKTtLakaLA~el---~~~~~~is~se~ 487 (795)
-++|+||+|+||||++..||..+ +..+..+++..+
T Consensus 208 ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDty 245 (407)
T PRK12726 208 IISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTF 245 (407)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCcc
Confidence 38999999999999999998755 445555665543
No 464
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=97.16 E-value=0.0011 Score=78.46 Aligned_cols=45 Identities=24% Similarity=0.200 Sum_probs=38.5
Q ss_pred ccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeecc
Q 003795 441 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 485 (795)
Q Consensus 441 ~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~s 485 (795)
..++++++.+++| +.|+||+|+|||||++.|+|...+.-+.+...
T Consensus 337 ~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~ 383 (547)
T PRK10522 337 FSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLD 383 (547)
T ss_pred eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEC
Confidence 3678889999988 99999999999999999999887777665443
No 465
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=97.16 E-value=0.00078 Score=69.07 Aligned_cols=28 Identities=21% Similarity=0.447 Sum_probs=22.7
Q ss_pred ccCcccCCc---eEEECCCCCchhHHHHHhh
Q 003795 445 RRGVRIPGG---ILLCGPPGVGKTLLAKAVA 472 (795)
Q Consensus 445 ~~gl~i~~g---iLL~GPpGtGKTtLakaLA 472 (795)
..++.+..+ ++|+||||+|||||++.|+
T Consensus 19 ~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 19 PLDIQLGENKRVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred cceEEECCCceEEEEECCCCCChHHHHHHHH
Confidence 344555543 8999999999999999998
No 466
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=97.16 E-value=0.00032 Score=73.74 Aligned_cols=49 Identities=18% Similarity=0.377 Sum_probs=39.6
Q ss_pred ccccccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeecc
Q 003795 437 FTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 485 (795)
Q Consensus 437 ~~~~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~s 485 (795)
|.+...+.++++.+..| +.|+||||+|||||+++|+|...+.-+++...
T Consensus 11 ~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~ 61 (240)
T PRK09493 11 FGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVD 61 (240)
T ss_pred ECCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEC
Confidence 33445678888888877 88999999999999999999887766666543
No 467
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=97.15 E-value=0.00069 Score=80.45 Aligned_cols=44 Identities=20% Similarity=0.219 Sum_probs=37.1
Q ss_pred ccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeec
Q 003795 441 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (795)
Q Consensus 441 ~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (795)
..++++++.+++| ++++||+|+|||||++.|+|...+.-+.+..
T Consensus 354 ~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i 399 (576)
T TIGR02204 354 PALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILL 399 (576)
T ss_pred ccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEE
Confidence 3677888999888 9999999999999999999988776665543
No 468
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.14 E-value=0.00046 Score=69.97 Aligned_cols=68 Identities=26% Similarity=0.378 Sum_probs=43.8
Q ss_pred ceEEECCCCCchhHHHHHhhhhccccEEEeeccceehh------hh----------ccchhhHHhHHHHHHhcCCceeEh
Q 003795 453 GILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEI------YV----------GVGASRVRSLYQEAKDNAPSVVFI 516 (795)
Q Consensus 453 giLL~GPpGtGKTtLakaLA~el~~~~~~is~se~~~~------~~----------g~~~~~l~~lf~~ar~~~p~Il~I 516 (795)
.++|+||+|+|||||+++|++........+...+..+. .+ +........++..+.+..|+++++
T Consensus 27 ~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lR~~pd~i~i 106 (186)
T cd01130 27 NILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRSALRMRPDRIIV 106 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHHHhccCCCEEEE
Confidence 38999999999999999999977543332222221111 00 001123455666677788999999
Q ss_pred HHHH
Q 003795 517 DELD 520 (795)
Q Consensus 517 DEID 520 (795)
.|+.
T Consensus 107 gEir 110 (186)
T cd01130 107 GEVR 110 (186)
T ss_pred EccC
Confidence 9984
No 469
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=97.14 E-value=0.00079 Score=81.88 Aligned_cols=57 Identities=23% Similarity=0.284 Sum_probs=43.5
Q ss_pred HHHHHHHhcc--ccccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeecc
Q 003795 429 ELEEIVKFFT--HGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 485 (795)
Q Consensus 429 ~l~~lv~~~~--~~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~s 485 (795)
.++++...|. ....+.++++.+++| +.|+|++|+|||||++.|+|...+.-+.+...
T Consensus 457 ~~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~id 517 (694)
T TIGR01846 457 TFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVD 517 (694)
T ss_pred EEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEC
Confidence 3444544553 234688899999888 99999999999999999999887766655443
No 470
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=97.14 E-value=0.00093 Score=77.70 Aligned_cols=44 Identities=23% Similarity=0.315 Sum_probs=37.3
Q ss_pred ccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeec
Q 003795 441 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (795)
Q Consensus 441 ~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (795)
..+.++++.++.| ++|+||||+|||||+++|+|...+..+.+..
T Consensus 38 ~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I 83 (549)
T PRK13545 38 YALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDI 83 (549)
T ss_pred eEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 3567888888888 8899999999999999999988776666654
No 471
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=97.13 E-value=0.0001 Score=78.44 Aligned_cols=49 Identities=24% Similarity=0.259 Sum_probs=39.6
Q ss_pred hccccccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeec
Q 003795 436 FFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (795)
Q Consensus 436 ~~~~~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (795)
.|.....+.++++.+..| ++|+||||+|||||+++|+|.+.+..+++..
T Consensus 10 ~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~ 60 (256)
T TIGR03873 10 SAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDL 60 (256)
T ss_pred EECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEE
Confidence 344445778888888877 8899999999999999999988776665544
No 472
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=97.13 E-value=0.00033 Score=73.34 Aligned_cols=45 Identities=18% Similarity=0.274 Sum_probs=38.2
Q ss_pred ccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeecc
Q 003795 441 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 485 (795)
Q Consensus 441 ~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~s 485 (795)
..+.++++.++.| ++|+||||+|||||+++|+|.+.+..+++...
T Consensus 23 ~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~ 69 (233)
T PRK11629 23 DVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFN 69 (233)
T ss_pred eeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEC
Confidence 4678888888887 88999999999999999999887777766543
No 473
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=97.13 E-value=0.00082 Score=79.85 Aligned_cols=44 Identities=23% Similarity=0.354 Sum_probs=37.4
Q ss_pred ccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeec
Q 003795 441 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (795)
Q Consensus 441 ~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (795)
..++++++.+++| +.|+||+|+|||||++.|+|...+..+.+..
T Consensus 329 ~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~ 374 (569)
T PRK10789 329 PALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRF 374 (569)
T ss_pred ccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEE
Confidence 4678888999888 9999999999999999999988776665543
No 474
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=97.12 E-value=0.00013 Score=77.50 Aligned_cols=49 Identities=22% Similarity=0.283 Sum_probs=39.6
Q ss_pred hccccccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeec
Q 003795 436 FFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (795)
Q Consensus 436 ~~~~~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (795)
.|.+...+.++++.+..| ++|+||||+|||||+++|+|...+..+.+..
T Consensus 11 ~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~ 61 (255)
T PRK11231 11 GYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFL 61 (255)
T ss_pred EECCEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEE
Confidence 344455778888888887 8899999999999999999987766665543
No 475
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=97.12 E-value=0.00014 Score=77.91 Aligned_cols=54 Identities=19% Similarity=0.167 Sum_probs=41.6
Q ss_pred HHHHHhccccccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeec
Q 003795 431 EEIVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (795)
Q Consensus 431 ~~lv~~~~~~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (795)
+++...|.+...+.++++.+..| +.|+||||+|||||+++|+|...+..+.+..
T Consensus 15 ~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~ 70 (265)
T PRK10575 15 RNVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILL 70 (265)
T ss_pred eeEEEEECCEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEE
Confidence 34444444445778888998887 8899999999999999999987666555543
No 476
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=97.11 E-value=0.00014 Score=76.35 Aligned_cols=49 Identities=22% Similarity=0.316 Sum_probs=39.2
Q ss_pred hccccccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeec
Q 003795 436 FFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (795)
Q Consensus 436 ~~~~~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (795)
.|.....+.++++.+..| ++|+||||+|||||+++|+|...+.-+.+..
T Consensus 14 ~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~ 64 (237)
T PRK11614 14 HYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVF 64 (237)
T ss_pred eeCCceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEE
Confidence 343445677888888887 8899999999999999999988776666544
No 477
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.11 E-value=0.00035 Score=73.65 Aligned_cols=45 Identities=24% Similarity=0.276 Sum_probs=37.3
Q ss_pred cccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeec
Q 003795 440 GEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (795)
Q Consensus 440 ~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (795)
...+.++++.+..| +.|+||||+|||||+++|+|...+.-+.+..
T Consensus 14 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 60 (242)
T cd03295 14 KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFI 60 (242)
T ss_pred ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEE
Confidence 34677888888887 8899999999999999999988776666544
No 478
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=97.10 E-value=0.00015 Score=75.34 Aligned_cols=48 Identities=25% Similarity=0.298 Sum_probs=38.3
Q ss_pred ccccccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeec
Q 003795 437 FTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (795)
Q Consensus 437 ~~~~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (795)
+.....+.++++.+..| ++|.||||+|||||+++|+|.+.+.-+.+..
T Consensus 10 ~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 59 (223)
T TIGR03740 10 FGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIF 59 (223)
T ss_pred ECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 33344677788888777 8899999999999999999988776666544
No 479
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=97.10 E-value=0.00037 Score=72.69 Aligned_cols=43 Identities=26% Similarity=0.292 Sum_probs=37.0
Q ss_pred cccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeec
Q 003795 442 MYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (795)
Q Consensus 442 ~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (795)
.+.++++.+..| +.|.||||+|||||+++|+|...+..+.+..
T Consensus 25 ~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~ 69 (228)
T PRK10584 25 ILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSL 69 (228)
T ss_pred EEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEE
Confidence 677888888887 9999999999999999999988777666654
No 480
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=97.10 E-value=0.00035 Score=74.54 Aligned_cols=48 Identities=21% Similarity=0.385 Sum_probs=39.0
Q ss_pred ccccccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeec
Q 003795 437 FTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (795)
Q Consensus 437 ~~~~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (795)
|.....+.++++.+..| ++|+||||+|||||+++|+|...+..+.+..
T Consensus 12 ~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~ 61 (258)
T PRK13548 12 LGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRL 61 (258)
T ss_pred eCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEE
Confidence 33445678888888887 8899999999999999999988766666554
No 481
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=97.09 E-value=0.00097 Score=67.60 Aligned_cols=19 Identities=26% Similarity=0.525 Sum_probs=18.1
Q ss_pred eEEECCCCCchhHHHHHhh
Q 003795 454 ILLCGPPGVGKTLLAKAVA 472 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA 472 (795)
++|+||||+||||++|.++
T Consensus 2 ~~ltG~N~~GKst~l~~i~ 20 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVG 20 (185)
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 6899999999999999998
No 482
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.08 E-value=0.0016 Score=71.72 Aligned_cols=111 Identities=23% Similarity=0.252 Sum_probs=59.8
Q ss_pred eEEECCCCCchhHHHHHhhhhc---cccEEEeeccceehh-------------hh---ccchhhHHhHHHHHHhcCCcee
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEI-------------YV---GVGASRVRSLYQEAKDNAPSVV 514 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el---~~~~~~is~se~~~~-------------~~---g~~~~~l~~lf~~ar~~~p~Il 514 (795)
+.|+||||+|||+|+-.++... +...+.++..+..+. ++ ......+..+...++...++++
T Consensus 58 teI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~~~~~~lI 137 (321)
T TIGR02012 58 IEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVRSGAVDII 137 (321)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhccCCcEE
Confidence 8899999999999987665533 455666665442221 00 0111112222233455678899
Q ss_pred EhHHHHHHhhhccCCCCCCcc---hHHHHHHHHHHhhhcccCCCcEEEEeccC
Q 003795 515 FIDELDAVGRERGLIKGSGGQ---ERDATLNQLLVCLDGFEGRGNVITIASTN 564 (795)
Q Consensus 515 ~IDEID~l~~~r~~~~~Sgge---~~r~~l~~LL~~ld~~~~~~~VlVIatTN 564 (795)
+||-+..+.+........++. .....+..++..|.......++.+|.+..
T Consensus 138 VIDSv~al~~~~E~e~~~g~~~~~~~aR~m~~~lr~L~~~l~~~~~tvi~tNQ 190 (321)
T TIGR02012 138 VVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGALSKSNTTAIFINQ 190 (321)
T ss_pred EEcchhhhccchhhcccccccchhHHHHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 999998876532111111111 11123344555455444556677776643
No 483
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.08 E-value=0.00017 Score=76.54 Aligned_cols=49 Identities=20% Similarity=0.399 Sum_probs=38.3
Q ss_pred hccccccccccCcccCCc--eEEECCCCCchhHHHHHhhhhcccc-----EEEeec
Q 003795 436 FFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVN-----FFSISA 484 (795)
Q Consensus 436 ~~~~~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~-----~~~is~ 484 (795)
.|.....+.++++.+..| +.|.||||+|||||+++|+|...+. .+.+..
T Consensus 13 ~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~ 68 (253)
T PRK14267 13 YYGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRL 68 (253)
T ss_pred EeCCeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEE
Confidence 344445678888998888 8899999999999999999987642 555543
No 484
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=97.08 E-value=0.00046 Score=82.88 Aligned_cols=44 Identities=18% Similarity=0.148 Sum_probs=37.3
Q ss_pred ccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeec
Q 003795 441 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (795)
Q Consensus 441 ~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (795)
..+.++++.+..| +.|+||||+|||||+++|+|.+.+..+.|..
T Consensus 338 ~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~ 383 (623)
T PRK10261 338 HAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIF 383 (623)
T ss_pred EEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEE
Confidence 4678889999988 8899999999999999999988766665544
No 485
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=97.07 E-value=0.00092 Score=78.96 Aligned_cols=44 Identities=27% Similarity=0.403 Sum_probs=37.4
Q ss_pred ccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeec
Q 003795 441 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (795)
Q Consensus 441 ~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (795)
..+.++++.+++| +.|+||+|+|||||++.|+|...+..+.+..
T Consensus 332 ~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~ 377 (544)
T TIGR01842 332 PTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRL 377 (544)
T ss_pred cccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEE
Confidence 4678888999988 9999999999999999999988776665543
No 486
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=97.06 E-value=0.00019 Score=76.09 Aligned_cols=41 Identities=17% Similarity=0.344 Sum_probs=33.7
Q ss_pred hccccccccccCcccCCc--eEEECCCCCchhHHHHHhhhhcc
Q 003795 436 FFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAG 476 (795)
Q Consensus 436 ~~~~~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~ 476 (795)
.|.+...+.++++.+..| ++|+||||+|||||+++|+|..+
T Consensus 15 ~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 57 (253)
T PRK14242 15 FYGDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMND 57 (253)
T ss_pred EECCeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 343344678888888887 89999999999999999999754
No 487
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=97.06 E-value=0.00043 Score=74.14 Aligned_cols=49 Identities=20% Similarity=0.263 Sum_probs=40.0
Q ss_pred hccccccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeec
Q 003795 436 FFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (795)
Q Consensus 436 ~~~~~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (795)
.|.+...+.++++.+..| +.|+||||+|||||+++|+|...+..+++..
T Consensus 16 ~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~ 66 (265)
T PRK10253 16 GYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWL 66 (265)
T ss_pred EECCEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEE
Confidence 344445778888998888 8999999999999999999988776666654
No 488
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=97.06 E-value=0.001 Score=79.34 Aligned_cols=44 Identities=20% Similarity=0.223 Sum_probs=37.0
Q ss_pred ccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeec
Q 003795 441 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (795)
Q Consensus 441 ~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (795)
..+.++++.+++| +.|+||+|+|||||++.|+|...+.-+.+..
T Consensus 349 ~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~ 394 (585)
T TIGR01192 349 QGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILI 394 (585)
T ss_pred ccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEE
Confidence 3578888998888 9999999999999999999988776665543
No 489
>COG1485 Predicted ATPase [General function prediction only]
Probab=97.06 E-value=0.00086 Score=73.45 Aligned_cols=125 Identities=18% Similarity=0.213 Sum_probs=68.5
Q ss_pred chHHHHHHHHHHHhccccccccc----c---CcccCCceEEECCCCCchhHHHHHhhhhccccE-EEeeccceehh----
Q 003795 423 LGKIRLELEEIVKFFTHGEMYRR----R---GVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNF-FSISASQFVEI---- 490 (795)
Q Consensus 423 l~~~~~~l~~lv~~~~~~~~~~~----~---gl~i~~giLL~GPpGtGKTtLakaLA~el~~~~-~~is~se~~~~---- 490 (795)
....+..++.+...+..+..... + .-.+++|+.|+|+-|.|||.|....-..+...- .++....|+..
T Consensus 30 Q~~a~~~Ldrl~~~~~~~~~~~~~l~~lf~r~~~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~~~k~R~HFh~FM~~vH~~ 109 (367)
T COG1485 30 QPAAAAALDRLYDELVAPRSARKALGWLFGRDHGPVRGLYLWGGVGRGKTMLMDLFYESLPGERKRRLHFHRFMARVHQR 109 (367)
T ss_pred HHHHHHHHHHHHHHhhcccccccccccccccCCCCCceEEEECCCCccHHHHHHHHHhhCCccccccccHHHHHHHHHHH
Confidence 34556666666554332221111 1 234678999999999999999999988775543 33333333322
Q ss_pred ---hhccchhhHHhHHHHHHhcCCceeEhHHHHH--HhhhccCCCCCCcchHHHHHHHHHHhhhcccCCCcEEEEeccCC
Q 003795 491 ---YVGVGASRVRSLYQEAKDNAPSVVFIDELDA--VGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNR 565 (795)
Q Consensus 491 ---~~g~~~~~l~~lf~~ar~~~p~Il~IDEID~--l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVIatTN~ 565 (795)
..|+. .-+..+-... .....+++|||+.- ++.. .++..|+..+= ..+|++++|+|.
T Consensus 110 l~~l~g~~-dpl~~iA~~~-~~~~~vLCfDEF~VtDI~DA-------------MiL~rL~~~Lf----~~GV~lvaTSN~ 170 (367)
T COG1485 110 LHTLQGQT-DPLPPIADEL-AAETRVLCFDEFEVTDIADA-------------MILGRLLEALF----ARGVVLVATSNT 170 (367)
T ss_pred HHHHcCCC-CccHHHHHHH-HhcCCEEEeeeeeecChHHH-------------HHHHHHHHHHH----HCCcEEEEeCCC
Confidence 12222 1111111111 12345899999843 2211 25555555443 347899999986
Q ss_pred C
Q 003795 566 P 566 (795)
Q Consensus 566 ~ 566 (795)
+
T Consensus 171 ~ 171 (367)
T COG1485 171 A 171 (367)
T ss_pred C
Confidence 3
No 490
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.05 E-value=0.00021 Score=75.70 Aligned_cols=49 Identities=22% Similarity=0.280 Sum_probs=38.1
Q ss_pred hccccccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccc-----cEEEeec
Q 003795 436 FFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGV-----NFFSISA 484 (795)
Q Consensus 436 ~~~~~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~-----~~~~is~ 484 (795)
.|.+...+.++++.++.| ++|+||||+|||||+++|+|...+ ..+.+..
T Consensus 12 ~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~ 67 (250)
T PRK14247 12 SFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYL 67 (250)
T ss_pred EECCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEE
Confidence 344445678888888887 889999999999999999998753 3555543
No 491
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=97.04 E-value=0.00041 Score=84.93 Aligned_cols=162 Identities=17% Similarity=0.223 Sum_probs=99.6
Q ss_pred eEEECCCCCchhHHHHHhhhhccccEEEeeccceehhhhc-----c--chhhHHhHH---HHH--HhcCCceeEhHHHHH
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVG-----V--GASRVRSLY---QEA--KDNAPSVVFIDELDA 521 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el~~~~~~is~se~~~~~~g-----~--~~~~l~~lf---~~a--r~~~p~Il~IDEID~ 521 (795)
++++||||+|||+.+.+.|++++..++..+.++....+.. . ....+...+ ... .....-||++||+|.
T Consensus 360 ~l~~G~pGigKT~~~h~~~k~~g~~v~E~Nas~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~ 439 (871)
T KOG1968|consen 360 LLLSGPPGIGKTTAAHKAAKELGFKVVEKNASDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDG 439 (871)
T ss_pred HHhcCCCCCCchhhHhhhhhhcccceeecCccccccccHHHhhhhccccccchhhhhcccccccccccceeEEEEecccc
Confidence 5899999999999999999999999999998876654221 1 111122222 000 011123899999998
Q ss_pred Hhh-hccCCCCCCcchHHHHHHHHHHhhhcccCCCcEEEEeccCCCCCCCccccCCCcccceecCCCCCHHHHHHHHHHH
Q 003795 522 VGR-ERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVH 600 (795)
Q Consensus 522 l~~-~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVIatTN~~d~LdpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~ 600 (795)
+.. +|+ .+..+...+. ....-+|+++|..+.....-+. |-...++|+.|+...+..-+...
T Consensus 440 ~~~~dRg------------~v~~l~~l~~----ks~~Piv~~cndr~~p~sr~~~--~~~~~l~f~kP~~~~i~~ri~si 501 (871)
T KOG1968|consen 440 MFGEDRG------------GVSKLSSLCK----KSSRPLVCTCNDRNLPKSRALS--RACSDLRFSKPSSELIRSRIMSI 501 (871)
T ss_pred ccchhhh------------hHHHHHHHHH----hccCCeEEEecCCCCccccchh--hhcceeeecCCcHHHHHhhhhhh
Confidence 754 222 3344433333 3445677777776655443333 44467999999998876655544
Q ss_pred H-ccCCCCChhhHHHHHhhCCCCcHHHHHHHHHHHHHH
Q 003795 601 A-RKKPMADDVDYLAVASMTDGMVGAELANIVEVAAIN 637 (795)
Q Consensus 601 l-~~~~~~~d~dl~~LA~~t~G~sgadL~~lv~~A~~~ 637 (795)
+ .+.....+-.+..+...+ ++||++.+..-..+
T Consensus 502 ~~se~~ki~~~~l~~~s~~~----~~DiR~~i~~lq~~ 535 (871)
T KOG1968|consen 502 CKSEGIKISDDVLEEISKLS----GGDIRQIIMQLQFW 535 (871)
T ss_pred hcccceecCcHHHHHHHHhc----ccCHHHHHHHHhhh
Confidence 4 333333444566677666 67777776655444
No 492
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.04 E-value=0.0038 Score=61.48 Aligned_cols=23 Identities=43% Similarity=0.693 Sum_probs=21.0
Q ss_pred ceEEECCCCCchhHHHHHhhhhc
Q 003795 453 GILLCGPPGVGKTLLAKAVAGEA 475 (795)
Q Consensus 453 giLL~GPpGtGKTtLakaLA~el 475 (795)
.++++|+||+||||++.-|+..+
T Consensus 7 ki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 7 KIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred EEEEeCCCCccHHHHHHHHHHHH
Confidence 48999999999999999999766
No 493
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=97.04 E-value=0.0005 Score=72.68 Aligned_cols=45 Identities=22% Similarity=0.310 Sum_probs=37.0
Q ss_pred cccccccCcccCCc--eEEECCCCCchhHHHHHhhhhcccc-----EEEeec
Q 003795 440 GEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVN-----FFSISA 484 (795)
Q Consensus 440 ~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~-----~~~is~ 484 (795)
...+.++++.++.| +.|+||||+|||||+++|+|...+. .+.+..
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~ 65 (247)
T TIGR00972 14 KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLF 65 (247)
T ss_pred eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEE
Confidence 34677888888888 8899999999999999999988664 565544
No 494
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.03 E-value=0.0021 Score=74.17 Aligned_cols=71 Identities=23% Similarity=0.470 Sum_probs=50.1
Q ss_pred eEEECCCCCchhHHHHHhhhhc---cccEEEeeccceehhh------hcc--------chhhHHhHHHHHHhcCCceeEh
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEIY------VGV--------GASRVRSLYQEAKDNAPSVVFI 516 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el---~~~~~~is~se~~~~~------~g~--------~~~~l~~lf~~ar~~~p~Il~I 516 (795)
++|+|+||+|||||+..++... +...++++..+..... +|. ....+..+++.+....|.+++|
T Consensus 83 ~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~~~~~lVVI 162 (446)
T PRK11823 83 VLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATIEEEKPDLVVI 162 (446)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHHhhCCCEEEE
Confidence 8999999999999999998754 4567777765533221 111 1123455666677778999999
Q ss_pred HHHHHHhh
Q 003795 517 DELDAVGR 524 (795)
Q Consensus 517 DEID~l~~ 524 (795)
|.+..+..
T Consensus 163 DSIq~l~~ 170 (446)
T PRK11823 163 DSIQTMYS 170 (446)
T ss_pred echhhhcc
Confidence 99988754
No 495
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.02 E-value=0.00021 Score=75.56 Aligned_cols=41 Identities=20% Similarity=0.406 Sum_probs=34.1
Q ss_pred hccccccccccCcccCCc--eEEECCCCCchhHHHHHhhhhcc
Q 003795 436 FFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAG 476 (795)
Q Consensus 436 ~~~~~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~ 476 (795)
.|.....+.++++.+..| +.|+||||+|||||+++|+|...
T Consensus 12 ~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~ 54 (250)
T PRK14262 12 YYGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMND 54 (250)
T ss_pred EeCCceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 344445678888888887 88999999999999999999765
No 496
>PRK13409 putative ATPase RIL; Provisional
Probab=97.02 E-value=0.0007 Score=80.68 Aligned_cols=50 Identities=26% Similarity=0.221 Sum_probs=38.2
Q ss_pred HHHhccc-cccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEee
Q 003795 433 IVKFFTH-GEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 483 (795)
Q Consensus 433 lv~~~~~-~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is 483 (795)
+...|+. ...+.++. .+..| +.|+||||+|||||+++|+|.+.+..+.+.
T Consensus 79 ~~~~yg~~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~ 131 (590)
T PRK13409 79 PVHRYGVNGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYE 131 (590)
T ss_pred ceEEecCCceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCcccc
Confidence 5555653 23556666 55566 789999999999999999999888777765
No 497
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.01 E-value=0.00012 Score=77.97 Aligned_cols=46 Identities=17% Similarity=0.354 Sum_probs=36.5
Q ss_pred HHHHHhccccccccccCcccCCc--eEEECCCCCchhHHHHHhhhhcc
Q 003795 431 EEIVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAG 476 (795)
Q Consensus 431 ~~lv~~~~~~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~ 476 (795)
+++...|.....+.++++.++.| +.|.||||+|||||+++|+|...
T Consensus 16 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 63 (259)
T PRK14274 16 NGMNLWYGQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQ 63 (259)
T ss_pred eeEEEEECCeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 33333444445678888998888 89999999999999999999865
No 498
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.01 E-value=0.00056 Score=71.53 Aligned_cols=30 Identities=27% Similarity=0.354 Sum_probs=23.8
Q ss_pred cccCcccCCc--eEEECCCCCchhHHHHHhhh
Q 003795 444 RRRGVRIPGG--ILLCGPPGVGKTLLAKAVAG 473 (795)
Q Consensus 444 ~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~ 473 (795)
.++.+.+..| ++|+||||+||||+++.+++
T Consensus 22 n~i~~~~~~g~~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 22 NDIHLSAEGGYCQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred EeEEEEecCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3444554443 89999999999999999998
No 499
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=97.01 E-value=0.00037 Score=72.28 Aligned_cols=40 Identities=20% Similarity=0.227 Sum_probs=33.7
Q ss_pred ccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEe
Q 003795 443 YRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSI 482 (795)
Q Consensus 443 ~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~i 482 (795)
++++++.++.| +.|+||||+|||||+++|+|...+..+.+
T Consensus 3 l~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i 44 (213)
T PRK15177 3 LDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDF 44 (213)
T ss_pred eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCE
Confidence 56778888887 88999999999999999999876655554
No 500
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=97.01 E-value=0.0016 Score=77.16 Aligned_cols=44 Identities=27% Similarity=0.293 Sum_probs=38.3
Q ss_pred cccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeecc
Q 003795 442 MYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 485 (795)
Q Consensus 442 ~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~s 485 (795)
.+.++++.++.| +.|+||+|+|||||++.|++...+..+.+...
T Consensus 357 ~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~ 402 (555)
T TIGR01194 357 ALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLD 402 (555)
T ss_pred eeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEC
Confidence 678888999888 99999999999999999999888877766543
Done!