Query 003795
Match_columns 795
No_of_seqs 684 out of 5357
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 04:17:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003795.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003795hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ce7_A Cell division protein F 100.0 1.4E-61 4.7E-66 551.8 34.4 371 412-789 10-383 (476)
2 2dhr_A FTSH; AAA+ protein, hex 100.0 1.7E-58 5.7E-63 529.2 31.0 368 413-789 26-396 (499)
3 4b4t_J 26S protease regulatory 100.0 5.9E-44 2E-48 396.0 21.3 250 410-659 140-390 (405)
4 4b4t_I 26S protease regulatory 100.0 8.8E-43 3E-47 387.7 23.1 251 410-660 174-425 (437)
5 4b4t_H 26S protease regulatory 100.0 2E-42 6.9E-47 388.1 21.3 250 411-660 202-452 (467)
6 4b4t_M 26S protease regulatory 100.0 3.8E-42 1.3E-46 386.5 22.3 248 410-657 173-421 (434)
7 4b4t_L 26S protease subunit RP 100.0 3.6E-42 1.2E-46 387.0 21.9 249 411-659 174-423 (437)
8 4b4t_K 26S protease regulatory 100.0 2E-41 6.7E-46 380.4 23.0 250 410-659 164-415 (428)
9 3cf2_A TER ATPase, transitiona 100.0 6.5E-37 2.2E-41 366.1 6.5 230 412-641 471-701 (806)
10 3cf2_A TER ATPase, transitiona 100.0 1.1E-34 3.6E-39 347.0 18.3 243 412-657 198-458 (806)
11 1lv7_A FTSH; alpha/beta domain 100.0 7E-32 2.4E-36 283.1 26.7 250 410-659 4-253 (257)
12 2x8a_A Nuclear valosin-contain 100.0 4.2E-32 1.4E-36 289.2 17.3 242 413-657 5-263 (274)
13 1ixz_A ATP-dependent metallopr 100.0 3E-31 1E-35 277.8 22.4 247 409-655 7-253 (254)
14 3cf0_A Transitional endoplasmi 100.0 1.6E-31 5.4E-36 288.0 20.2 246 411-656 8-279 (301)
15 3h4m_A Proteasome-activating n 100.0 4.9E-30 1.7E-34 272.3 22.5 248 411-658 10-258 (285)
16 1iy2_A ATP-dependent metallopr 100.0 1E-29 3.4E-34 270.3 22.6 244 412-655 34-277 (278)
17 2qz4_A Paraplegin; AAA+, SPG7, 100.0 6E-30 2E-34 267.6 17.0 247 414-660 2-251 (262)
18 2di4_A Zinc protease, cell div 100.0 1.1E-30 3.7E-35 270.5 8.8 117 668-789 11-128 (238)
19 1xwi_A SKD1 protein; VPS4B, AA 100.0 6.1E-29 2.1E-33 270.6 23.1 224 412-641 6-233 (322)
20 3eie_A Vacuolar protein sortin 100.0 2.5E-29 8.6E-34 273.2 18.5 230 406-641 6-238 (322)
21 3hu3_A Transitional endoplasmi 100.0 4.7E-28 1.6E-32 277.5 21.7 241 413-656 199-457 (489)
22 2qp9_X Vacuolar protein sortin 100.0 5.7E-28 1.9E-32 266.4 20.9 224 412-641 45-271 (355)
23 2r62_A Cell division protease 100.0 4.4E-30 1.5E-34 270.5 3.4 245 412-656 5-251 (268)
24 2zan_A Vacuolar protein sortin 100.0 1.6E-27 5.3E-32 270.5 20.4 226 410-641 126-355 (444)
25 1ypw_A Transitional endoplasmi 99.9 5E-28 1.7E-32 292.8 4.3 232 411-642 470-702 (806)
26 3d8b_A Fidgetin-like protein 1 99.9 5E-25 1.7E-29 243.0 24.6 244 411-660 77-336 (357)
27 3b9p_A CG5977-PA, isoform A; A 99.9 1.8E-25 6.1E-30 238.8 18.8 241 410-656 13-270 (297)
28 3vfd_A Spastin; ATPase, microt 99.9 1.5E-24 5E-29 241.7 20.9 243 409-657 106-364 (389)
29 1qvr_A CLPB protein; coiled co 99.9 5.8E-26 2E-30 277.0 8.7 387 208-638 359-819 (854)
30 3t15_A Ribulose bisphosphate c 99.9 6.3E-26 2.2E-30 243.6 3.5 178 445-629 30-222 (293)
31 1ypw_A Transitional endoplasmi 99.9 3.6E-23 1.2E-27 250.4 20.4 242 412-656 198-457 (806)
32 3pxi_A Negative regulator of g 99.8 2.7E-21 9.1E-26 233.1 10.4 326 205-636 349-722 (758)
33 2c9o_A RUVB-like 1; hexameric 99.8 3E-21 1E-25 219.6 -5.5 204 413-633 32-262 (456)
34 3syl_A Protein CBBX; photosynt 99.8 1E-18 3.4E-23 187.2 12.1 222 419-652 32-280 (309)
35 3m6a_A ATP-dependent protease 99.7 1.1E-18 3.6E-23 202.8 8.1 243 394-657 51-340 (543)
36 3uk6_A RUVB-like 2; hexameric 99.7 2.3E-17 7.7E-22 181.0 16.9 218 414-657 40-329 (368)
37 3pfi_A Holliday junction ATP-d 99.7 2.3E-16 7.9E-21 171.2 19.7 214 412-657 23-253 (338)
38 1ofh_A ATP-dependent HSL prote 99.7 3.7E-16 1.3E-20 166.5 13.0 233 419-656 16-297 (310)
39 1hqc_A RUVB; extended AAA-ATPa 99.6 1.5E-15 5.3E-20 163.3 17.1 212 413-657 7-237 (324)
40 1d2n_A N-ethylmaleimide-sensit 99.6 1.1E-15 3.6E-20 161.4 13.9 196 447-656 60-262 (272)
41 3hws_A ATP-dependent CLP prote 99.6 1.3E-15 4.4E-20 167.7 14.2 220 420-641 17-325 (363)
42 1g41_A Heat shock protein HSLU 99.6 2.2E-16 7.4E-21 177.9 7.9 170 418-599 15-190 (444)
43 1r6b_X CLPA protein; AAA+, N-t 99.6 1.5E-16 5.1E-21 191.6 6.5 225 387-636 420-713 (758)
44 1l8q_A Chromosomal replication 99.6 8.9E-15 3E-19 158.2 15.1 191 451-659 37-241 (324)
45 2z4s_A Chromosomal replication 99.6 5E-15 1.7E-19 167.6 12.5 190 451-656 130-330 (440)
46 2v1u_A Cell division control p 99.6 3.4E-14 1.2E-18 155.5 17.9 221 417-658 18-276 (387)
47 2chg_A Replication factor C sm 99.6 4E-14 1.4E-18 141.7 16.7 201 413-656 12-224 (226)
48 2r44_A Uncharacterized protein 99.6 2.4E-14 8.2E-19 155.2 15.6 212 416-659 25-298 (331)
49 1g8p_A Magnesium-chelatase 38 99.5 2E-14 6.8E-19 156.1 13.6 215 413-658 19-322 (350)
50 1njg_A DNA polymerase III subu 99.5 6.6E-14 2.3E-18 141.6 16.4 202 413-655 18-248 (250)
51 3pvs_A Replication-associated 99.5 8.2E-15 2.8E-19 166.2 10.3 204 412-656 20-242 (447)
52 4fcw_A Chaperone protein CLPB; 99.5 1.8E-14 6.3E-19 153.9 12.3 200 419-638 18-278 (311)
53 3u61_B DNA polymerase accessor 99.5 2.4E-14 8.3E-19 154.5 11.7 203 410-656 18-235 (324)
54 3bos_A Putative DNA replicatio 99.5 4.3E-14 1.5E-18 144.2 12.6 180 451-656 52-241 (242)
55 1um8_A ATP-dependent CLP prote 99.5 8.1E-14 2.8E-18 154.0 12.9 202 451-654 72-361 (376)
56 2qby_B CDC6 homolog 3, cell di 99.5 3E-13 1E-17 148.5 16.9 211 418-658 20-270 (384)
57 1in4_A RUVB, holliday junction 99.5 1E-12 3.4E-17 143.3 20.8 212 415-658 22-250 (334)
58 2qby_A CDC6 homolog 1, cell di 99.5 5.9E-13 2E-17 145.4 18.4 221 416-658 18-272 (386)
59 1sxj_D Activator 1 41 kDa subu 99.5 2.7E-13 9.3E-18 147.1 15.3 208 411-656 30-261 (353)
60 1r6b_X CLPA protein; AAA+, N-t 99.5 4.1E-13 1.4E-17 161.7 16.2 221 414-658 182-433 (758)
61 1fnn_A CDC6P, cell division co 99.5 1.2E-12 4.1E-17 143.6 18.4 218 417-658 16-274 (389)
62 1sxj_A Activator 1 95 kDa subu 99.5 2.4E-13 8.3E-18 156.8 13.2 224 410-656 31-272 (516)
63 2chq_A Replication factor C sm 99.4 6E-13 2.1E-17 142.0 14.6 205 409-656 8-224 (319)
64 1jbk_A CLPB protein; beta barr 99.4 5.8E-14 2E-18 137.3 4.6 159 414-597 18-194 (195)
65 3pxg_A Negative regulator of g 99.4 4.1E-13 1.4E-17 153.1 11.3 190 413-642 175-389 (468)
66 3te6_A Regulatory protein SIR3 99.4 2.9E-13 1E-17 146.5 9.1 138 450-604 44-214 (318)
67 3f9v_A Minichromosome maintena 99.4 3.9E-13 1.3E-17 157.5 10.6 185 453-658 329-587 (595)
68 1sxj_B Activator 1 37 kDa subu 99.4 2.4E-12 8E-17 137.6 15.7 203 411-656 14-229 (323)
69 1jr3_A DNA polymerase III subu 99.4 3E-12 1E-16 140.0 16.3 203 412-655 10-241 (373)
70 3pxi_A Negative regulator of g 99.4 1.5E-12 5.1E-17 156.9 11.6 189 413-641 175-388 (758)
71 1qvr_A CLPB protein; coiled co 99.4 1.9E-12 6.5E-17 158.0 12.6 203 414-641 166-395 (854)
72 3nbx_X ATPase RAVA; AAA+ ATPas 99.3 4.2E-13 1.4E-17 153.9 6.3 184 452-652 42-280 (500)
73 1iqp_A RFCS; clamp loader, ext 99.3 6E-12 2.1E-16 134.7 15.0 203 410-655 17-231 (327)
74 1sxj_C Activator 1 40 kDa subu 99.3 7.5E-12 2.6E-16 136.3 13.1 209 410-656 17-237 (340)
75 2p65_A Hypothetical protein PF 99.3 1.3E-12 4.4E-17 127.6 5.2 152 414-589 18-187 (187)
76 2bjv_A PSP operon transcriptio 99.3 6.9E-12 2.3E-16 131.5 10.9 205 415-651 3-250 (265)
77 1sxj_E Activator 1 40 kDa subu 99.2 2.5E-11 8.4E-16 132.1 12.4 192 409-636 5-242 (354)
78 1ojl_A Transcriptional regulat 99.2 2.6E-11 8.8E-16 130.6 8.8 201 420-652 4-246 (304)
79 1a5t_A Delta prime, HOLB; zinc 99.2 9.7E-11 3.3E-15 127.6 12.1 159 449-634 22-208 (334)
80 3k1j_A LON protease, ATP-depen 99.1 1.2E-10 3.9E-15 137.0 10.3 131 510-656 201-373 (604)
81 3kw6_A 26S protease regulatory 99.1 3E-10 1E-14 97.5 9.2 74 586-659 1-74 (78)
82 1w5s_A Origin recognition comp 99.1 1.8E-09 6.3E-14 119.2 17.9 223 418-657 22-292 (412)
83 2krk_A 26S protease regulatory 99.0 4.3E-10 1.5E-14 98.6 8.3 76 584-659 7-82 (86)
84 3ljc_A ATP-dependent protease 99.0 2.6E-10 9E-15 119.6 7.2 152 127-296 73-235 (252)
85 2gno_A DNA polymerase III, gam 99.0 1.3E-09 4.4E-14 117.5 10.9 124 452-601 19-152 (305)
86 3n70_A Transport activator; si 99.0 3.8E-10 1.3E-14 107.8 6.1 110 421-566 4-116 (145)
87 3vlf_B 26S protease regulatory 98.9 2.7E-09 9.2E-14 93.9 8.4 73 589-661 2-74 (88)
88 3co5_A Putative two-component 98.9 1.1E-09 3.8E-14 104.4 4.6 110 421-566 7-116 (143)
89 3cmw_A Protein RECA, recombina 98.8 5E-09 1.7E-13 133.8 9.6 155 411-566 1013-1218(1706)
90 3aji_B S6C, proteasome (prosom 98.8 1.2E-08 4E-13 88.5 7.4 71 589-659 2-72 (83)
91 4akg_A Glutathione S-transfera 98.7 1.1E-08 3.9E-13 135.7 9.3 138 451-603 1267-1433(2695)
92 2dzn_B 26S protease regulatory 98.6 1.6E-08 5.4E-13 87.7 3.4 68 591-658 1-68 (82)
93 3ec2_A DNA replication protein 98.6 3.5E-08 1.2E-12 97.1 5.4 102 451-567 38-144 (180)
94 2kjq_A DNAA-related protein; s 98.5 2.5E-08 8.4E-13 96.1 3.1 55 453-522 38-95 (149)
95 3f8t_A Predicted ATPase involv 98.5 3.5E-07 1.2E-11 103.0 12.2 185 453-658 241-483 (506)
96 1ny5_A Transcriptional regulat 98.5 5.3E-07 1.8E-11 100.1 11.5 179 453-654 162-383 (387)
97 2vhj_A Ntpase P4, P4; non- hyd 98.4 1.1E-07 3.7E-12 102.7 2.9 115 454-573 126-242 (331)
98 3m65_A ATP-dependent protease 98.3 6.3E-08 2.2E-12 98.5 0.5 134 126-277 63-207 (209)
99 1svm_A Large T antigen; AAA+ f 98.3 2E-07 6.8E-12 103.2 2.4 122 444-587 160-284 (377)
100 2w58_A DNAI, primosome compone 98.2 1.9E-07 6.5E-12 93.2 0.0 69 452-522 55-127 (202)
101 3dzd_A Transcriptional regulat 98.2 3.4E-06 1.2E-10 93.0 9.7 189 420-637 131-360 (368)
102 2fna_A Conserved hypothetical 98.2 6.7E-06 2.3E-10 88.2 11.1 163 453-632 32-251 (357)
103 3fvq_A Fe(3+) IONS import ATP- 98.1 8.3E-07 2.8E-11 97.5 3.3 51 435-485 12-64 (359)
104 2qen_A Walker-type ATPase; unk 98.1 1.6E-05 5.6E-10 85.0 13.1 166 452-632 32-247 (350)
105 3rlf_A Maltose/maltodextrin im 98.1 8.1E-07 2.8E-11 98.2 2.8 51 435-485 11-63 (381)
106 3gfo_A Cobalt import ATP-bindi 98.1 1.5E-06 5.1E-11 92.2 3.7 44 442-485 23-68 (275)
107 4akg_A Glutathione S-transfera 98.1 1.9E-05 6.4E-10 105.4 14.7 164 452-637 646-839 (2695)
108 1z47_A CYSA, putative ABC-tran 98.0 2.1E-06 7.3E-11 94.1 4.5 48 438-485 26-75 (355)
109 2r2a_A Uncharacterized protein 98.0 2.2E-06 7.4E-11 86.6 4.1 128 453-592 7-157 (199)
110 1v43_A Sugar-binding transport 98.0 2.7E-06 9.4E-11 93.9 5.2 51 435-485 19-71 (372)
111 2it1_A 362AA long hypothetical 98.0 2.3E-06 7.8E-11 94.2 3.8 50 436-485 12-63 (362)
112 2yyz_A Sugar ABC transporter, 98.0 2.2E-06 7.5E-11 94.2 3.2 50 436-485 12-63 (359)
113 1ye8_A Protein THEP1, hypothet 98.0 1.1E-05 3.8E-10 79.8 7.8 26 454-479 3-28 (178)
114 2pcj_A ABC transporter, lipopr 97.9 2.4E-06 8.1E-11 87.8 2.2 50 436-485 13-64 (224)
115 1zbo_A Hypothetical protein BP 97.9 3.2E-06 1.1E-10 85.8 2.9 128 126-275 59-203 (210)
116 1g29_1 MALK, maltose transport 97.9 3.3E-06 1.1E-10 93.3 2.8 49 436-484 12-62 (372)
117 1jr3_D DNA polymerase III, del 97.9 1.7E-05 5.9E-10 85.9 8.5 176 450-657 17-208 (343)
118 3tif_A Uncharacterized ABC tra 97.9 7.2E-06 2.5E-10 84.8 5.1 45 441-485 19-65 (235)
119 1oxx_K GLCV, glucose, ABC tran 97.9 2.7E-06 9.3E-11 93.3 1.9 43 442-484 20-64 (353)
120 2c9o_A RUVB-like 1; hexameric 97.9 1.5E-05 5.2E-10 90.2 8.2 127 511-657 296-436 (456)
121 3d31_A Sulfate/molybdate ABC t 97.9 4E-06 1.4E-10 91.8 2.9 48 437-485 11-60 (348)
122 4g1u_C Hemin import ATP-bindin 97.9 4.6E-06 1.6E-10 88.0 3.1 48 436-483 20-69 (266)
123 3cmu_A Protein RECA, recombina 97.9 1.3E-05 4.6E-10 103.7 7.8 116 448-563 1424-1561(2050)
124 2qgz_A Helicase loader, putati 97.9 1.2E-06 4.2E-11 94.2 -1.7 69 451-521 152-225 (308)
125 1sgw_A Putative ABC transporte 97.9 4.4E-05 1.5E-09 77.9 9.9 49 436-485 19-69 (214)
126 2pjz_A Hypothetical protein ST 97.8 3.7E-05 1.3E-09 80.9 9.4 44 440-485 18-63 (263)
127 1vpl_A ABC transporter, ATP-bi 97.8 3.9E-05 1.3E-09 80.4 8.8 50 436-485 24-75 (256)
128 2nq2_C Hypothetical ABC transp 97.8 2.3E-05 7.8E-10 82.0 6.5 45 439-483 17-63 (253)
129 2ff7_A Alpha-hemolysin translo 97.8 3.9E-05 1.3E-09 79.9 8.2 46 440-485 22-69 (247)
130 3tui_C Methionine import ATP-b 97.8 8E-06 2.7E-10 89.8 2.7 45 441-485 42-88 (366)
131 2cbz_A Multidrug resistance-as 97.7 3.5E-05 1.2E-09 79.7 7.0 46 440-485 18-65 (237)
132 2ehv_A Hypothetical protein PH 97.7 0.00011 3.8E-09 75.0 9.7 19 454-472 33-51 (251)
133 2bbs_A Cystic fibrosis transme 97.6 7E-05 2.4E-09 79.9 7.9 56 428-485 41-98 (290)
134 3nh6_A ATP-binding cassette SU 97.6 4.9E-05 1.7E-09 81.7 5.9 46 440-485 67-114 (306)
135 3vkg_A Dynein heavy chain, cyt 97.6 8.3E-05 2.8E-09 100.1 9.3 136 452-602 1305-1470(3245)
136 4a74_A DNA repair and recombin 97.5 4.7E-05 1.6E-09 76.7 4.4 22 454-475 28-49 (231)
137 1tue_A Replication protein E1; 97.5 3.3E-05 1.1E-09 78.2 3.1 26 452-477 59-84 (212)
138 1g6h_A High-affinity branched- 97.5 5.7E-05 1.9E-09 79.0 4.3 50 436-485 16-67 (257)
139 1b0u_A Histidine permease; ABC 97.5 5.8E-05 2E-09 79.3 4.2 50 436-485 15-66 (262)
140 2onk_A Molybdate/tungstate ABC 97.5 2.5E-05 8.6E-10 81.0 1.1 43 443-485 15-58 (240)
141 2w0m_A SSO2452; RECA, SSPF, un 97.4 0.00012 4.2E-09 73.5 6.2 22 454-475 26-47 (235)
142 1ji0_A ABC transporter; ATP bi 97.4 6E-05 2E-09 78.1 3.9 49 437-485 16-66 (240)
143 4gp7_A Metallophosphoesterase; 97.4 1.7E-05 5.8E-10 77.5 -0.3 27 446-472 2-30 (171)
144 2olj_A Amino acid ABC transpor 97.4 7E-05 2.4E-09 78.8 4.2 51 435-485 32-84 (263)
145 1htw_A HI0065; nucleotide-bind 97.4 3.2E-05 1.1E-09 75.1 1.4 41 442-483 22-64 (158)
146 2eyu_A Twitching motility prot 97.4 6.6E-05 2.2E-09 78.8 3.6 67 454-520 28-108 (261)
147 2ihy_A ABC transporter, ATP-bi 97.4 7.4E-05 2.5E-09 79.2 3.9 51 435-485 29-81 (279)
148 3jvv_A Twitching mobility prot 97.4 0.00012 4.3E-09 80.2 5.8 67 454-520 126-206 (356)
149 2pze_A Cystic fibrosis transme 97.3 0.00011 3.7E-09 75.6 4.0 46 440-485 21-68 (229)
150 2ixe_A Antigen peptide transpo 97.3 0.00013 4.3E-09 77.1 4.3 46 440-485 32-79 (271)
151 3ozx_A RNAse L inhibitor; ATP 97.3 0.00015 5E-09 83.9 5.1 115 447-567 288-417 (538)
152 1n0w_A DNA repair protein RAD5 97.3 0.00017 5.8E-09 73.3 4.8 33 454-486 27-68 (243)
153 3vkg_A Dynein heavy chain, cyt 97.3 0.0004 1.4E-08 93.6 9.5 126 452-598 605-750 (3245)
154 2qi9_C Vitamin B12 import ATP- 97.3 0.00012 4.1E-09 76.3 3.6 44 442-486 15-60 (249)
155 3qf4_B Uncharacterized ABC tra 97.3 0.00042 1.4E-08 81.1 8.6 46 440-485 368-415 (598)
156 2d2e_A SUFC protein; ABC-ATPas 97.2 0.00013 4.4E-09 76.0 3.6 49 437-485 13-65 (250)
157 1mv5_A LMRA, multidrug resista 97.2 0.0001 3.4E-09 76.5 2.6 45 440-484 15-61 (243)
158 3b5x_A Lipid A export ATP-bind 97.2 0.00046 1.6E-08 80.5 8.4 56 429-484 343-402 (582)
159 2yl4_A ATP-binding cassette SU 97.2 0.00033 1.1E-08 81.9 7.0 45 441-485 358-404 (595)
160 2yz2_A Putative ABC transporte 97.2 0.00016 5.6E-09 75.9 4.0 45 441-485 21-67 (266)
161 3vaa_A Shikimate kinase, SK; s 97.2 0.00013 4.5E-09 72.7 3.1 39 444-482 16-56 (199)
162 4a82_A Cystic fibrosis transme 97.2 0.00041 1.4E-08 80.8 7.8 46 440-485 354-401 (578)
163 2pt7_A CAG-ALFA; ATPase, prote 97.2 8.2E-05 2.8E-09 80.8 1.6 77 444-520 162-250 (330)
164 2zu0_C Probable ATP-dependent 97.2 0.00018 6.1E-09 75.7 3.9 50 436-485 29-82 (267)
165 3hr8_A Protein RECA; alpha and 97.2 0.00036 1.2E-08 76.5 6.4 108 454-562 64-194 (356)
166 2cvh_A DNA repair and recombin 97.2 0.00026 8.7E-09 70.8 4.8 33 454-486 23-55 (220)
167 1yqt_A RNAse L inhibitor; ATP- 97.2 0.00016 5.5E-09 83.6 3.5 115 443-567 302-433 (538)
168 3b60_A Lipid A export ATP-bind 97.2 0.00042 1.5E-08 80.8 7.0 54 432-485 346-403 (582)
169 1zp6_A Hypothetical protein AT 97.1 0.00023 7.8E-09 69.8 3.7 33 454-486 12-44 (191)
170 3qf4_A ABC transporter, ATP-bi 97.1 0.00057 2E-08 79.8 7.4 46 440-485 356-403 (587)
171 2zr9_A Protein RECA, recombina 97.1 0.00029 1E-08 77.0 4.5 70 454-523 64-152 (349)
172 1pzn_A RAD51, DNA repair and r 97.1 0.00035 1.2E-08 76.3 4.9 29 447-475 125-155 (349)
173 3bk7_A ABC transporter ATP-bin 97.1 0.00023 7.8E-09 83.5 3.7 40 443-482 372-413 (607)
174 2ghi_A Transport protein; mult 97.0 0.00034 1.2E-08 73.3 4.1 44 441-485 34-79 (260)
175 3nwj_A ATSK2; P loop, shikimat 97.0 0.00018 6E-09 75.1 1.8 43 440-482 32-79 (250)
176 1qhx_A CPT, protein (chloramph 97.0 0.00037 1.3E-08 67.5 3.8 35 453-487 5-39 (178)
177 4f4c_A Multidrug resistance pr 96.9 0.00075 2.6E-08 85.9 7.1 47 440-486 431-479 (1321)
178 1kag_A SKI, shikimate kinase I 96.9 0.00053 1.8E-08 66.1 4.1 28 453-480 6-33 (173)
179 2ewv_A Twitching motility prot 96.9 0.00031 1.1E-08 77.4 2.5 67 454-520 139-219 (372)
180 3thx_B DNA mismatch repair pro 96.9 0.00084 2.9E-08 82.0 6.4 34 440-473 660-695 (918)
181 1z6g_A Guanylate kinase; struc 96.9 0.00041 1.4E-08 70.4 3.0 34 442-475 12-47 (218)
182 2iw3_A Elongation factor 3A; a 96.8 0.0006 2.1E-08 83.5 4.8 39 435-473 443-483 (986)
183 3gd7_A Fusion complex of cysti 96.8 0.00049 1.7E-08 76.4 3.6 46 439-485 33-80 (390)
184 1xp8_A RECA protein, recombina 96.8 0.0014 4.9E-08 72.0 6.9 111 453-563 76-208 (366)
185 3j16_B RLI1P; ribosome recycli 96.8 0.0013 4.4E-08 77.1 6.7 29 454-482 106-134 (608)
186 3trf_A Shikimate kinase, SK; a 96.8 0.00056 1.9E-08 66.7 3.1 31 452-482 6-36 (185)
187 2jeo_A Uridine-cytidine kinase 96.8 0.00053 1.8E-08 70.7 3.0 38 441-478 13-52 (245)
188 3ozx_A RNAse L inhibitor; ATP 96.8 0.0016 5.6E-08 75.2 7.4 40 443-482 14-56 (538)
189 3kb2_A SPBC2 prophage-derived 96.8 0.00067 2.3E-08 64.9 3.5 30 454-483 4-33 (173)
190 2v9p_A Replication protein E1; 96.8 0.00025 8.5E-09 76.1 0.4 47 428-475 102-150 (305)
191 3g5u_A MCG1178, multidrug resi 96.7 0.0012 4E-08 83.9 6.5 45 441-485 404-450 (1284)
192 3j16_B RLI1P; ribosome recycli 96.7 0.0014 4.9E-08 76.7 6.7 39 442-480 362-407 (608)
193 3lda_A DNA repair protein RAD5 96.7 0.00088 3E-08 74.6 4.6 110 454-565 181-327 (400)
194 1u94_A RECA protein, recombina 96.7 0.0014 4.6E-08 71.9 5.8 77 448-524 60-155 (356)
195 1y63_A LMAJ004144AAA protein; 96.7 0.00073 2.5E-08 66.4 3.3 29 454-482 13-42 (184)
196 2rhm_A Putative kinase; P-loop 96.7 0.00067 2.3E-08 66.4 2.8 30 452-481 6-35 (193)
197 1v5w_A DMC1, meiotic recombina 96.7 0.0015 5.1E-08 71.1 5.7 108 454-563 125-271 (343)
198 1nlf_A Regulatory protein REPA 96.7 0.0011 3.9E-08 69.5 4.6 22 454-475 33-54 (279)
199 1via_A Shikimate kinase; struc 96.6 0.00076 2.6E-08 65.4 2.9 29 453-481 6-34 (175)
200 4eun_A Thermoresistant glucoki 96.6 0.001 3.5E-08 66.2 3.8 26 454-479 32-57 (200)
201 2z43_A DNA repair and recombin 96.6 0.0017 5.8E-08 69.9 5.7 107 454-562 110-254 (324)
202 2p5t_B PEZT; postsegregational 96.6 0.0012 4E-08 68.5 4.2 37 451-487 32-68 (253)
203 3thx_A DNA mismatch repair pro 96.6 0.0019 6.6E-08 79.0 6.5 31 442-472 651-683 (934)
204 3tr0_A Guanylate kinase, GMP k 96.6 0.00093 3.2E-08 66.1 3.1 23 454-476 10-32 (205)
205 1g41_A Heat shock protein HSLU 96.6 0.0041 1.4E-07 70.0 8.6 139 512-656 252-431 (444)
206 3g5u_A MCG1178, multidrug resi 96.5 0.0016 5.6E-08 82.6 5.8 45 441-485 1047-1093(1284)
207 2ze6_A Isopentenyl transferase 96.5 0.0012 4E-08 68.7 3.6 31 454-484 4-34 (253)
208 2oap_1 GSPE-2, type II secreti 96.5 0.0005 1.7E-08 78.9 0.8 67 453-519 262-342 (511)
209 1knq_A Gluconate kinase; ALFA/ 96.5 0.0011 3.9E-08 64.0 3.2 27 454-480 11-37 (175)
210 3lw7_A Adenylate kinase relate 96.5 0.0011 3.9E-08 63.0 3.0 27 454-481 4-30 (179)
211 2iyv_A Shikimate kinase, SK; t 96.5 0.0012 4E-08 64.4 3.2 29 453-481 4-32 (184)
212 3t61_A Gluconokinase; PSI-biol 96.5 0.0012 4.1E-08 65.6 3.2 30 452-481 19-48 (202)
213 1wb9_A DNA mismatch repair pro 96.5 0.012 4.2E-07 70.9 12.6 34 440-474 595-630 (800)
214 3uie_A Adenylyl-sulfate kinase 96.5 0.00097 3.3E-08 66.4 2.5 23 454-476 28-50 (200)
215 2b8t_A Thymidine kinase; deoxy 96.5 0.0039 1.3E-07 63.8 7.1 69 454-522 15-101 (223)
216 1znw_A Guanylate kinase, GMP k 96.5 0.0011 3.9E-08 66.3 3.0 28 449-476 16-45 (207)
217 3iij_A Coilin-interacting nucl 96.5 0.0015 5E-08 63.6 3.6 30 452-481 12-41 (180)
218 3io5_A Recombination and repai 96.4 0.002 6.8E-08 69.4 4.8 71 454-524 31-125 (333)
219 4f4c_A Multidrug resistance pr 96.4 0.0012 4.2E-08 84.0 3.8 43 441-483 1093-1137(1321)
220 2r8r_A Sensor protein; KDPD, P 96.4 0.013 4.4E-07 60.1 10.6 31 454-484 9-42 (228)
221 3b9q_A Chloroplast SRP recepto 96.4 0.0013 4.5E-08 70.4 3.3 34 445-478 92-127 (302)
222 3c8u_A Fructokinase; YP_612366 96.4 0.0018 6.1E-08 64.9 3.9 33 454-486 25-60 (208)
223 3cmu_A Protein RECA, recombina 96.4 0.0027 9.3E-08 82.7 6.5 118 448-565 729-868 (2050)
224 1gvn_B Zeta; postsegregational 96.4 0.002 6.8E-08 68.4 4.4 35 452-486 34-68 (287)
225 3a00_A Guanylate kinase, GMP k 96.4 0.0019 6.4E-08 63.6 3.9 26 454-479 4-29 (186)
226 3asz_A Uridine kinase; cytidin 96.4 0.002 6.8E-08 64.2 4.1 33 454-486 9-41 (211)
227 1zuh_A Shikimate kinase; alpha 96.4 0.0015 5E-08 62.8 3.0 29 454-482 10-38 (168)
228 2if2_A Dephospho-COA kinase; a 96.4 0.0013 4.5E-08 65.2 2.7 28 454-482 4-31 (204)
229 3sfz_A APAF-1, apoptotic pepti 96.3 0.024 8.3E-07 70.7 14.6 168 418-624 124-322 (1249)
230 2orw_A Thymidine kinase; TMTK, 96.3 0.00089 3E-08 66.3 1.2 21 454-474 6-26 (184)
231 1e6c_A Shikimate kinase; phosp 96.3 0.0016 5.4E-08 62.6 3.0 29 453-481 4-32 (173)
232 3umf_A Adenylate kinase; rossm 96.3 0.0054 1.9E-07 62.5 7.0 38 451-490 29-66 (217)
233 2dr3_A UPF0273 protein PH0284; 96.3 0.0092 3.1E-07 60.3 8.8 31 454-484 26-59 (247)
234 1ly1_A Polynucleotide kinase; 96.3 0.0019 6.4E-08 62.2 3.4 26 453-478 4-30 (181)
235 2j41_A Guanylate kinase; GMP, 96.3 0.002 7E-08 63.6 3.7 24 454-477 9-32 (207)
236 3cm0_A Adenylate kinase; ATP-b 96.3 0.0019 6.4E-08 62.9 3.4 27 454-480 7-33 (186)
237 3pxg_A Negative regulator of g 96.3 0.0026 8.9E-08 72.1 5.0 95 205-305 349-445 (468)
238 1kht_A Adenylate kinase; phosp 96.3 0.0015 5.3E-08 63.5 2.7 23 454-476 6-28 (192)
239 1cke_A CK, MSSA, protein (cyti 96.3 0.002 7E-08 64.7 3.6 28 453-480 7-34 (227)
240 1tev_A UMP-CMP kinase; ploop, 96.3 0.0017 5.9E-08 63.3 2.9 28 453-480 5-32 (196)
241 3lnc_A Guanylate kinase, GMP k 96.3 0.0013 4.3E-08 67.0 1.9 33 444-476 18-53 (231)
242 1s96_A Guanylate kinase, GMP k 96.3 0.0019 6.5E-08 65.8 3.3 24 454-477 19-42 (219)
243 2cdn_A Adenylate kinase; phosp 96.2 0.0018 6.2E-08 64.2 3.0 30 453-482 22-51 (201)
244 1u0j_A DNA replication protein 96.2 0.0023 7.9E-08 67.2 3.9 32 452-484 105-136 (267)
245 3dl0_A Adenylate kinase; phosp 96.2 0.0019 6.4E-08 64.7 3.1 29 454-482 3-31 (216)
246 1z6t_A APAF-1, apoptotic prote 96.2 0.011 3.7E-07 68.4 9.8 168 419-624 125-322 (591)
247 2c95_A Adenylate kinase 1; tra 96.2 0.0018 6E-08 63.5 2.6 29 453-481 11-39 (196)
248 3fb4_A Adenylate kinase; psych 96.2 0.0019 6.6E-08 64.6 2.9 29 454-482 3-31 (216)
249 1jjv_A Dephospho-COA kinase; P 96.2 0.0025 8.7E-08 63.3 3.7 27 454-481 5-31 (206)
250 2gza_A Type IV secretion syste 96.2 0.0012 4.1E-08 72.4 1.4 41 444-484 166-208 (361)
251 2pt5_A Shikimate kinase, SK; a 96.2 0.0022 7.5E-08 61.3 3.0 28 454-481 3-30 (168)
252 1p9r_A General secretion pathw 96.2 0.00071 2.4E-08 75.8 -0.7 28 451-478 166-194 (418)
253 1qf9_A UMP/CMP kinase, protein 96.1 0.0022 7.4E-08 62.4 2.9 30 452-481 7-36 (194)
254 2bwj_A Adenylate kinase 5; pho 96.1 0.002 6.8E-08 63.3 2.6 29 453-481 14-42 (199)
255 3e1s_A Exodeoxyribonuclease V, 96.1 0.0029 1E-07 73.6 4.3 31 453-483 206-239 (574)
256 1vma_A Cell division protein F 96.1 0.0082 2.8E-07 64.3 7.5 23 453-475 106-128 (306)
257 3upu_A ATP-dependent DNA helic 96.1 0.0068 2.3E-07 68.4 7.1 23 453-475 47-69 (459)
258 2vli_A Antibiotic resistance p 96.1 0.0023 8E-08 62.0 2.8 28 453-480 7-34 (183)
259 1aky_A Adenylate kinase; ATP:A 96.1 0.0024 8.2E-08 64.3 2.9 29 453-481 6-34 (220)
260 3kta_A Chromosome segregation 96.1 0.0029 9.9E-08 61.5 3.3 33 445-477 19-52 (182)
261 1zd8_A GTP:AMP phosphotransfer 96.0 0.0025 8.7E-08 64.5 2.9 29 453-481 9-37 (227)
262 2pez_A Bifunctional 3'-phospho 96.0 0.0038 1.3E-07 60.7 4.0 31 454-484 8-41 (179)
263 2og2_A Putative signal recogni 96.0 0.0027 9.3E-08 69.6 3.3 33 445-477 149-183 (359)
264 1ukz_A Uridylate kinase; trans 96.0 0.0028 9.5E-08 62.8 3.0 28 454-481 18-45 (203)
265 3tau_A Guanylate kinase, GMP k 96.0 0.0033 1.1E-07 63.0 3.6 24 454-477 11-34 (208)
266 1g5t_A COB(I)alamin adenosyltr 96.0 0.013 4.5E-07 58.7 7.8 113 454-584 31-176 (196)
267 2bbw_A Adenylate kinase 4, AK4 96.0 0.0032 1.1E-07 64.7 3.4 27 452-478 28-54 (246)
268 2jaq_A Deoxyguanosine kinase; 96.0 0.0033 1.1E-07 61.7 3.4 27 454-480 3-29 (205)
269 1sq5_A Pantothenate kinase; P- 96.0 0.0019 6.5E-08 69.1 1.7 23 454-476 83-105 (308)
270 1lvg_A Guanylate kinase, GMP k 96.0 0.0029 9.8E-08 63.1 2.9 23 454-476 7-29 (198)
271 2zts_A Putative uncharacterize 95.9 0.013 4.3E-07 59.4 7.6 32 454-485 33-68 (251)
272 2o8b_B DNA mismatch repair pro 95.9 0.008 2.7E-07 74.4 7.1 33 441-474 770-811 (1022)
273 2npi_A Protein CLP1; CLP1-PCF1 95.9 0.0031 1.1E-07 71.4 3.3 46 426-477 117-164 (460)
274 2pbr_A DTMP kinase, thymidylat 95.9 0.0045 1.5E-07 60.3 4.0 30 454-483 3-35 (195)
275 3sr0_A Adenylate kinase; phosp 95.9 0.004 1.4E-07 62.9 3.6 34 454-489 3-36 (206)
276 2bdt_A BH3686; alpha-beta prot 95.9 0.0033 1.1E-07 61.6 2.8 23 454-476 5-27 (189)
277 1kgd_A CASK, peripheral plasma 95.9 0.0034 1.2E-07 61.3 2.9 23 454-476 8-30 (180)
278 3be4_A Adenylate kinase; malar 95.9 0.003 1E-07 63.6 2.6 29 454-482 8-36 (217)
279 1ak2_A Adenylate kinase isoenz 95.9 0.0034 1.2E-07 64.0 2.9 29 453-481 18-46 (233)
280 1nks_A Adenylate kinase; therm 95.9 0.0032 1.1E-07 61.2 2.6 23 454-476 4-26 (194)
281 2qm8_A GTPase/ATPase; G protei 95.8 0.0014 4.8E-08 71.2 -0.2 32 444-475 46-79 (337)
282 2obl_A ESCN; ATPase, hydrolase 95.8 0.0036 1.2E-07 68.3 3.0 40 443-483 62-103 (347)
283 2i1q_A DNA repair and recombin 95.8 0.0059 2E-07 65.4 4.7 107 454-562 101-255 (322)
284 1zak_A Adenylate kinase; ATP:A 95.8 0.0025 8.6E-08 64.2 1.7 32 453-486 7-38 (222)
285 3b85_A Phosphate starvation-in 95.8 0.0035 1.2E-07 63.4 2.7 24 454-478 25-48 (208)
286 1e4v_A Adenylate kinase; trans 95.8 0.0033 1.1E-07 63.0 2.5 29 454-482 3-31 (214)
287 2v54_A DTMP kinase, thymidylat 95.8 0.006 2E-07 60.1 4.3 30 454-483 7-37 (204)
288 4e22_A Cytidylate kinase; P-lo 95.8 0.005 1.7E-07 63.8 3.8 27 454-480 30-56 (252)
289 2px0_A Flagellar biosynthesis 95.8 0.016 5.5E-07 61.7 7.8 33 453-485 107-143 (296)
290 1tf7_A KAIC; homohexamer, hexa 95.7 0.022 7.7E-07 65.3 9.5 108 449-566 277-417 (525)
291 3tlx_A Adenylate kinase 2; str 95.7 0.0041 1.4E-07 64.1 2.9 30 452-481 30-59 (243)
292 3sop_A Neuronal-specific septi 95.7 0.0034 1.2E-07 66.0 2.4 30 454-483 5-34 (270)
293 3crm_A TRNA delta(2)-isopenten 95.7 0.0053 1.8E-07 66.3 3.9 32 453-484 7-38 (323)
294 2iw3_A Elongation factor 3A; a 95.7 0.0033 1.1E-07 77.0 2.6 45 441-485 687-733 (986)
295 2qt1_A Nicotinamide riboside k 95.7 0.0052 1.8E-07 61.1 3.6 27 454-480 24-51 (207)
296 1pui_A ENGB, probable GTP-bind 95.7 0.0031 1.1E-07 62.3 1.9 45 428-475 4-50 (210)
297 2z0h_A DTMP kinase, thymidylat 95.7 0.006 2E-07 59.7 4.0 29 454-482 3-34 (197)
298 2dpy_A FLII, flagellum-specifi 95.7 0.0048 1.6E-07 69.5 3.6 40 444-484 149-190 (438)
299 3a4m_A L-seryl-tRNA(SEC) kinas 95.7 0.0049 1.7E-07 64.1 3.4 33 454-486 7-42 (260)
300 2yhs_A FTSY, cell division pro 95.7 0.006 2E-07 69.5 4.2 34 444-477 284-319 (503)
301 2xb4_A Adenylate kinase; ATP-b 95.7 0.0057 1.9E-07 62.0 3.6 27 454-480 3-29 (223)
302 2iut_A DNA translocase FTSK; n 95.6 0.019 6.5E-07 66.4 8.2 74 512-598 345-420 (574)
303 1yqt_A RNAse L inhibitor; ATP- 95.6 0.0059 2E-07 70.5 3.9 37 443-480 38-76 (538)
304 3ake_A Cytidylate kinase; CMP 95.6 0.0064 2.2E-07 60.0 3.6 29 453-481 4-32 (208)
305 2i3b_A HCR-ntpase, human cance 95.6 0.005 1.7E-07 61.2 2.8 22 454-475 4-25 (189)
306 3dm5_A SRP54, signal recogniti 95.5 0.02 6.8E-07 64.4 7.5 69 451-519 100-191 (443)
307 2ius_A DNA translocase FTSK; n 95.5 0.026 9.1E-07 64.5 8.6 73 513-598 300-374 (512)
308 3kl4_A SRP54, signal recogniti 95.4 0.014 4.8E-07 65.5 6.1 32 453-484 99-133 (433)
309 3aez_A Pantothenate kinase; tr 95.4 0.0063 2.2E-07 65.4 3.0 24 454-477 93-116 (312)
310 3r20_A Cytidylate kinase; stru 95.4 0.0079 2.7E-07 61.9 3.6 28 453-480 11-38 (233)
311 2plr_A DTMP kinase, probable t 95.4 0.0067 2.3E-07 59.9 2.8 24 454-477 7-30 (213)
312 1uf9_A TT1252 protein; P-loop, 95.3 0.0068 2.3E-07 59.5 2.7 27 454-481 11-37 (203)
313 2grj_A Dephospho-COA kinase; T 95.3 0.0072 2.5E-07 60.3 2.9 28 454-481 15-42 (192)
314 1vht_A Dephospho-COA kinase; s 95.3 0.0077 2.6E-07 60.4 3.1 28 453-481 6-33 (218)
315 1uj2_A Uridine-cytidine kinase 95.3 0.012 4E-07 60.7 4.5 35 454-488 25-67 (252)
316 1ls1_A Signal recognition part 95.3 0.034 1.2E-06 59.0 8.2 45 429-475 78-122 (295)
317 1cr0_A DNA primase/helicase; R 95.3 0.0054 1.9E-07 64.7 2.0 23 454-476 38-60 (296)
318 3bk7_A ABC transporter ATP-bin 95.3 0.0088 3E-07 70.0 3.9 48 432-480 96-146 (607)
319 3ney_A 55 kDa erythrocyte memb 95.3 0.011 3.7E-07 59.4 3.9 23 454-476 22-44 (197)
320 2qor_A Guanylate kinase; phosp 95.3 0.0077 2.6E-07 59.9 2.9 23 454-476 15-37 (204)
321 2a5y_B CED-4; apoptosis; HET: 95.2 0.031 1.1E-06 64.4 8.3 143 453-623 154-330 (549)
322 2r6a_A DNAB helicase, replicat 95.2 0.013 4.6E-07 65.9 5.1 31 454-484 206-240 (454)
323 2wwf_A Thymidilate kinase, put 95.2 0.0046 1.6E-07 61.4 1.0 26 453-478 12-37 (212)
324 3a8t_A Adenylate isopentenyltr 95.1 0.01 3.4E-07 64.4 3.6 32 453-484 42-73 (339)
325 1lw7_A Transcriptional regulat 95.1 0.0088 3E-07 65.3 3.1 26 454-479 173-198 (365)
326 1rz3_A Hypothetical protein rb 95.1 0.013 4.3E-07 58.3 3.9 22 454-475 25-46 (201)
327 1j8m_F SRP54, signal recogniti 95.1 0.054 1.8E-06 57.6 9.0 54 429-484 76-134 (297)
328 1q3t_A Cytidylate kinase; nucl 95.1 0.011 3.9E-07 60.2 3.6 28 454-481 19-46 (236)
329 2qag_B Septin-6, protein NEDD5 95.0 0.0071 2.4E-07 67.7 1.9 29 446-474 33-65 (427)
330 1nn5_A Similar to deoxythymidy 95.0 0.0062 2.1E-07 60.4 1.2 26 453-478 11-36 (215)
331 3euj_A Chromosome partition pr 94.9 0.0058 2E-07 69.5 1.1 41 442-482 19-60 (483)
332 1m7g_A Adenylylsulfate kinase; 94.9 0.015 5.1E-07 58.1 3.9 31 454-484 28-62 (211)
333 1rj9_A FTSY, signal recognitio 94.9 0.0076 2.6E-07 64.5 1.8 25 454-478 105-129 (304)
334 1f2t_A RAD50 ABC-ATPase; DNA d 94.9 0.013 4.5E-07 55.7 3.2 27 449-475 20-47 (149)
335 2yvu_A Probable adenylyl-sulfa 94.9 0.01 3.6E-07 57.8 2.6 23 454-476 16-38 (186)
336 3gmt_A Adenylate kinase; ssgci 94.8 0.035 1.2E-06 57.0 6.5 34 454-489 11-44 (230)
337 3d3q_A TRNA delta(2)-isopenten 94.8 0.014 4.8E-07 63.4 3.5 31 453-483 9-39 (340)
338 3cmw_A Protein RECA, recombina 94.8 0.014 4.7E-07 75.3 3.9 114 449-563 1427-1565(1706)
339 2fz4_A DNA repair protein RAD2 94.8 0.03 1E-06 57.3 5.8 32 454-485 111-142 (237)
340 3foz_A TRNA delta(2)-isopenten 94.8 0.015 5.3E-07 62.3 3.6 33 452-484 11-43 (316)
341 2h92_A Cytidylate kinase; ross 94.7 0.015 5.2E-07 58.0 3.4 29 453-481 5-33 (219)
342 2f1r_A Molybdopterin-guanine d 94.7 0.0086 3E-07 58.6 1.4 33 453-485 4-39 (171)
343 3qf7_A RAD50; ABC-ATPase, ATPa 94.7 0.013 4.4E-07 64.3 2.8 31 444-474 15-46 (365)
344 1ex7_A Guanylate kinase; subst 94.6 0.019 6.5E-07 57.0 3.7 24 454-477 4-27 (186)
345 2ga8_A Hypothetical 39.9 kDa p 94.6 0.0056 1.9E-07 66.8 -0.1 29 453-481 26-54 (359)
346 3tqc_A Pantothenate kinase; bi 94.6 0.021 7.1E-07 61.6 4.3 24 453-476 94-117 (321)
347 3bh0_A DNAB-like replicative h 94.6 0.032 1.1E-06 59.8 5.6 31 454-484 71-104 (315)
348 1ltq_A Polynucleotide kinase; 94.6 0.013 4.3E-07 61.8 2.4 26 453-478 4-30 (301)
349 1u0l_A Probable GTPase ENGC; p 94.6 0.015 5.1E-07 61.9 3.0 31 454-484 172-202 (301)
350 4aby_A DNA repair protein RECN 94.5 0.0058 2E-07 67.5 -0.3 36 441-476 49-85 (415)
351 3e70_C DPA, signal recognition 94.5 0.0097 3.3E-07 64.4 1.4 24 454-477 132-155 (328)
352 3exa_A TRNA delta(2)-isopenten 94.5 0.019 6.6E-07 61.6 3.6 30 454-483 6-35 (322)
353 2f6r_A COA synthase, bifunctio 94.5 0.014 4.9E-07 61.4 2.5 27 454-481 78-104 (281)
354 1gtv_A TMK, thymidylate kinase 94.4 0.0091 3.1E-07 59.2 0.9 24 454-477 3-26 (214)
355 2f9l_A RAB11B, member RAS onco 94.4 0.018 6E-07 56.6 2.8 22 454-475 8-29 (199)
356 2qnr_A Septin-2, protein NEDD5 94.3 0.012 4.2E-07 62.6 1.7 36 435-474 6-41 (301)
357 2vp4_A Deoxynucleoside kinase; 94.3 0.02 6.9E-07 58.2 3.1 21 454-474 23-43 (230)
358 2q6t_A DNAB replication FORK h 94.3 0.029 1E-06 63.0 4.7 31 454-484 203-237 (444)
359 2rcn_A Probable GTPase ENGC; Y 94.3 0.016 5.4E-07 63.5 2.4 30 454-483 218-248 (358)
360 2o5v_A DNA replication and rep 94.3 0.02 6.9E-07 62.7 3.2 34 442-475 16-50 (359)
361 2ffh_A Protein (FFH); SRP54, s 94.3 0.1 3.5E-06 58.4 9.0 43 431-475 80-122 (425)
362 1tf7_A KAIC; homohexamer, hexa 94.3 0.013 4.3E-07 67.4 1.6 41 445-485 30-77 (525)
363 1oix_A RAS-related protein RAB 94.2 0.018 6E-07 56.4 2.5 22 454-475 32-53 (191)
364 2p67_A LAO/AO transport system 94.2 0.031 1E-06 60.6 4.6 22 454-475 59-80 (341)
365 4eaq_A DTMP kinase, thymidylat 94.2 0.022 7.4E-07 58.2 3.2 24 454-477 29-52 (229)
366 3zvl_A Bifunctional polynucleo 94.2 0.017 5.8E-07 64.4 2.5 26 454-479 261-286 (416)
367 2qmh_A HPR kinase/phosphorylas 94.1 0.026 8.9E-07 56.7 3.3 30 452-482 35-64 (205)
368 2qag_C Septin-7; cell cycle, c 94.0 0.01 3.4E-07 66.4 0.1 30 442-475 26-55 (418)
369 1t9h_A YLOQ, probable GTPase E 94.0 0.01 3.5E-07 63.6 0.1 30 454-483 176-205 (307)
370 3llm_A ATP-dependent RNA helic 93.9 0.069 2.4E-06 54.2 6.3 19 454-472 79-97 (235)
371 1tq4_A IIGP1, interferon-induc 93.9 0.014 4.7E-07 65.2 0.9 24 454-477 72-95 (413)
372 1odf_A YGR205W, hypothetical 3 93.8 0.029 9.9E-07 59.5 3.2 24 454-477 34-57 (290)
373 3qks_A DNA double-strand break 93.8 0.031 1.1E-06 55.9 3.2 28 449-476 20-48 (203)
374 3ux8_A Excinuclease ABC, A sub 93.7 0.021 7.3E-07 67.5 2.2 28 441-468 32-61 (670)
375 1a7j_A Phosphoribulokinase; tr 93.7 0.029 9.8E-07 59.5 2.9 35 454-488 8-45 (290)
376 1w4r_A Thymidine kinase; type 93.6 0.065 2.2E-06 53.6 5.3 67 454-522 23-103 (195)
377 3szr_A Interferon-induced GTP- 93.6 0.037 1.3E-06 64.7 4.0 34 448-482 43-77 (608)
378 1qhl_A Protein (cell division 93.5 0.0046 1.6E-07 63.4 -3.4 25 454-478 30-54 (227)
379 2wji_A Ferrous iron transport 93.5 0.032 1.1E-06 52.9 2.7 21 454-474 6-26 (165)
380 3fdi_A Uncharacterized protein 93.4 0.037 1.3E-06 55.3 3.2 28 454-481 9-36 (201)
381 2yv5_A YJEQ protein; hydrolase 93.4 0.024 8.1E-07 60.5 1.8 29 454-483 168-196 (302)
382 3qkt_A DNA double-strand break 93.4 0.032 1.1E-06 60.2 2.8 28 448-475 19-47 (339)
383 2j37_W Signal recognition part 93.4 0.12 4.3E-06 58.9 7.7 34 451-484 101-137 (504)
384 2zej_A Dardarin, leucine-rich 93.3 0.035 1.2E-06 53.7 2.8 21 454-474 5-25 (184)
385 2xau_A PRE-mRNA-splicing facto 93.3 0.06 2.1E-06 64.8 5.3 21 454-474 112-132 (773)
386 2xxa_A Signal recognition part 93.3 0.14 4.8E-06 57.4 8.0 36 451-486 100-139 (433)
387 1np6_A Molybdopterin-guanine d 93.3 0.04 1.4E-06 54.0 3.0 24 452-475 7-30 (174)
388 1ewq_A DNA mismatch repair pro 93.3 0.31 1E-05 58.5 11.2 34 441-475 567-600 (765)
389 3ux8_A Excinuclease ABC, A sub 93.1 0.028 9.4E-07 66.5 1.9 31 442-472 337-369 (670)
390 1e69_A Chromosome segregation 93.0 0.043 1.5E-06 58.8 3.0 29 447-475 19-48 (322)
391 3eph_A TRNA isopentenyltransfe 93.0 0.042 1.4E-06 61.0 3.0 29 454-482 5-33 (409)
392 2wjg_A FEOB, ferrous iron tran 93.0 0.044 1.5E-06 52.7 2.8 21 454-474 10-30 (188)
393 1nij_A Hypothetical protein YJ 92.9 0.026 9E-07 60.5 1.2 22 454-475 7-28 (318)
394 1c9k_A COBU, adenosylcobinamid 92.8 0.067 2.3E-06 52.8 3.8 32 454-486 2-33 (180)
395 1zu4_A FTSY; GTPase, signal re 92.7 0.068 2.3E-06 57.5 4.1 31 445-475 97-129 (320)
396 3cr8_A Sulfate adenylyltranfer 92.6 0.034 1.2E-06 64.3 1.7 24 454-477 372-395 (552)
397 1p5z_B DCK, deoxycytidine kina 92.6 0.054 1.8E-06 56.0 3.0 23 454-476 27-49 (263)
398 2dyk_A GTP-binding protein; GT 92.4 0.06 2.1E-06 50.0 2.9 21 454-474 4-24 (161)
399 1f6b_A SAR1; gtpases, N-termin 92.3 0.041 1.4E-06 54.1 1.6 20 454-473 28-47 (198)
400 3p32_A Probable GTPase RV1496/ 92.3 0.13 4.4E-06 55.9 5.8 22 454-475 82-103 (355)
401 1m2o_B GTP-binding protein SAR 92.3 0.054 1.8E-06 52.8 2.5 20 454-473 26-45 (190)
402 1z2a_A RAS-related protein RAB 92.3 0.062 2.1E-06 50.2 2.8 21 454-474 8-28 (168)
403 2nzj_A GTP-binding protein REM 92.3 0.062 2.1E-06 50.7 2.8 21 454-474 7-27 (175)
404 2gj8_A MNME, tRNA modification 92.3 0.055 1.9E-06 51.9 2.4 21 454-474 7-27 (172)
405 1kao_A RAP2A; GTP-binding prot 92.2 0.067 2.3E-06 49.7 2.9 21 454-474 6-26 (167)
406 1xx6_A Thymidine kinase; NESG, 92.1 0.15 5.1E-06 50.7 5.4 68 454-522 11-93 (191)
407 1x6v_B Bifunctional 3'-phospho 92.1 0.074 2.5E-06 62.3 3.7 32 454-485 55-89 (630)
408 2ged_A SR-beta, signal recogni 92.0 0.069 2.4E-06 51.6 2.9 23 453-475 50-72 (193)
409 2erx_A GTP-binding protein DI- 92.0 0.073 2.5E-06 49.8 2.9 21 454-474 6-26 (172)
410 1xjc_A MOBB protein homolog; s 92.0 0.069 2.4E-06 52.2 2.8 31 453-483 6-39 (169)
411 3q72_A GTP-binding protein RAD 92.0 0.059 2E-06 50.4 2.2 21 454-474 5-25 (166)
412 1u8z_A RAS-related protein RAL 91.9 0.073 2.5E-06 49.5 2.8 21 454-474 7-27 (168)
413 1z0j_A RAB-22, RAS-related pro 91.9 0.075 2.6E-06 49.7 2.9 22 454-475 9-30 (170)
414 2ce2_X GTPase HRAS; signaling 91.9 0.066 2.3E-06 49.6 2.4 21 454-474 6-26 (166)
415 2axn_A 6-phosphofructo-2-kinas 91.9 0.076 2.6E-06 60.9 3.4 33 454-486 38-73 (520)
416 1ek0_A Protein (GTP-binding pr 91.9 0.075 2.6E-06 49.6 2.8 21 454-474 6-26 (170)
417 3q85_A GTP-binding protein REM 91.9 0.073 2.5E-06 49.9 2.7 21 454-474 5-25 (169)
418 2lkc_A Translation initiation 91.8 0.094 3.2E-06 49.6 3.4 21 454-474 11-31 (178)
419 2lw1_A ABC transporter ATP-bin 91.8 0.33 1.1E-05 42.2 6.6 62 244-305 17-81 (89)
420 3auy_A DNA double-strand break 91.8 0.063 2.2E-06 58.7 2.5 30 444-473 17-47 (371)
421 1wms_A RAB-9, RAB9, RAS-relate 91.7 0.079 2.7E-06 50.1 2.9 21 454-474 10-30 (177)
422 1z08_A RAS-related protein RAB 91.7 0.081 2.8E-06 49.6 2.8 21 454-474 9-29 (170)
423 3tw8_B RAS-related protein RAB 91.7 0.074 2.5E-06 50.3 2.6 21 454-474 12-32 (181)
424 1q57_A DNA primase/helicase; d 91.7 0.093 3.2E-06 59.7 3.9 32 454-485 245-280 (503)
425 1w1w_A Structural maintenance 91.6 0.082 2.8E-06 58.9 3.2 25 454-478 29-53 (430)
426 1ky3_A GTP-binding protein YPT 91.6 0.084 2.9E-06 50.0 2.9 21 454-474 11-31 (182)
427 1g16_A RAS-related protein SEC 91.6 0.074 2.5E-06 49.7 2.4 21 454-474 6-26 (170)
428 1nrj_B SR-beta, signal recogni 91.6 0.081 2.8E-06 52.3 2.8 23 453-475 14-36 (218)
429 1c1y_A RAS-related protein RAP 91.6 0.085 2.9E-06 49.2 2.8 21 454-474 6-26 (167)
430 1ni3_A YCHF GTPase, YCHF GTP-b 91.6 0.12 3.9E-06 57.3 4.2 20 454-473 23-42 (392)
431 1r2q_A RAS-related protein RAB 91.5 0.087 3E-06 49.2 2.8 20 454-473 9-28 (170)
432 3hdt_A Putative kinase; struct 91.4 0.09 3.1E-06 53.6 3.0 28 454-481 17-44 (223)
433 2hxs_A RAB-26, RAS-related pro 91.4 0.097 3.3E-06 49.5 3.1 21 454-474 9-29 (178)
434 3bc1_A RAS-related protein RAB 91.3 0.092 3.1E-06 50.2 2.8 22 453-474 13-34 (195)
435 1udx_A The GTP-binding protein 91.3 0.09 3.1E-06 58.7 3.1 30 445-474 149-180 (416)
436 1r8s_A ADP-ribosylation factor 91.2 0.096 3.3E-06 48.8 2.8 21 454-474 3-23 (164)
437 4dsu_A GTPase KRAS, isoform 2B 91.2 0.096 3.3E-06 50.0 2.9 21 454-474 7-27 (189)
438 3clv_A RAB5 protein, putative; 91.2 0.096 3.3E-06 50.3 2.9 21 454-474 10-30 (208)
439 3lxx_A GTPase IMAP family memb 91.2 0.093 3.2E-06 53.2 2.9 22 454-475 32-53 (239)
440 3k53_A Ferrous iron transport 91.2 0.081 2.8E-06 55.0 2.4 23 453-475 5-27 (271)
441 3b6e_A Interferon-induced heli 91.1 0.16 5.4E-06 49.9 4.4 22 453-474 50-71 (216)
442 2www_A Methylmalonic aciduria 91.1 0.091 3.1E-06 57.1 2.9 22 454-475 77-98 (349)
443 2oil_A CATX-8, RAS-related pro 91.1 0.1 3.4E-06 50.5 2.8 21 454-474 28-48 (193)
444 2fn4_A P23, RAS-related protei 91.1 0.091 3.1E-06 49.7 2.5 21 454-474 12-32 (181)
445 1z0f_A RAB14, member RAS oncog 91.0 0.1 3.5E-06 49.2 2.8 21 454-474 18-38 (179)
446 1upt_A ARL1, ADP-ribosylation 91.0 0.1 3.5E-06 48.9 2.8 22 453-474 9-30 (171)
447 3con_A GTPase NRAS; structural 90.9 0.1 3.6E-06 50.1 2.8 21 454-474 24-44 (190)
448 2y8e_A RAB-protein 6, GH09086P 90.9 0.095 3.3E-06 49.5 2.4 21 454-474 17-37 (179)
449 3t1o_A Gliding protein MGLA; G 90.9 0.11 3.7E-06 49.9 2.9 22 454-475 17-38 (198)
450 1svi_A GTP-binding protein YSX 90.9 0.089 3.1E-06 50.8 2.2 22 453-474 25-46 (195)
451 3vkw_A Replicase large subunit 90.8 0.23 7.9E-06 55.7 5.8 21 454-474 164-184 (446)
452 1fzq_A ADP-ribosylation factor 90.8 0.09 3.1E-06 50.7 2.2 21 454-474 19-39 (181)
453 1sky_E F1-ATPase, F1-ATP synth 90.8 0.094 3.2E-06 59.3 2.6 22 454-475 154-175 (473)
454 2efe_B Small GTP-binding prote 90.8 0.11 3.9E-06 49.2 2.8 21 454-474 15-35 (181)
455 2a9k_A RAS-related protein RAL 90.8 0.11 3.8E-06 49.4 2.8 21 454-474 21-41 (187)
456 2cxx_A Probable GTP-binding pr 90.8 0.09 3.1E-06 50.3 2.2 21 454-474 4-24 (190)
457 3ice_A Transcription terminati 90.8 0.14 4.6E-06 56.6 3.7 28 448-475 169-198 (422)
458 3tqf_A HPR(Ser) kinase; transf 90.7 0.093 3.2E-06 51.6 2.2 23 452-474 17-39 (181)
459 4i1u_A Dephospho-COA kinase; s 90.7 0.12 4.1E-06 52.3 3.1 29 454-483 12-40 (210)
460 2v3c_C SRP54, signal recogniti 90.7 0.14 4.7E-06 57.4 3.8 34 452-485 100-136 (432)
461 2g6b_A RAS-related protein RAB 90.6 0.12 4.1E-06 49.0 2.8 21 454-474 13-33 (180)
462 1m7b_A RND3/RHOE small GTP-bin 90.6 0.11 3.6E-06 50.1 2.4 21 454-474 10-30 (184)
463 2gxq_A Heat resistant RNA depe 90.5 0.68 2.3E-05 45.1 8.4 15 453-467 40-54 (207)
464 2bme_A RAB4A, RAS-related prot 90.5 0.11 3.7E-06 49.7 2.4 21 454-474 13-33 (186)
465 1moz_A ARL1, ADP-ribosylation 90.5 0.085 2.9E-06 50.3 1.7 21 453-473 20-40 (183)
466 3pqc_A Probable GTP-binding pr 90.4 0.1 3.5E-06 50.1 2.2 21 454-474 26-46 (195)
467 4b3f_X DNA-binding protein smu 90.4 0.3 1E-05 57.4 6.6 31 454-484 208-241 (646)
468 2ocp_A DGK, deoxyguanosine kin 90.4 0.11 3.8E-06 52.8 2.5 23 454-476 5-27 (241)
469 3cbq_A GTP-binding protein REM 90.4 0.11 3.9E-06 50.8 2.5 20 454-473 26-45 (195)
470 3kkq_A RAS-related protein M-R 90.3 0.13 4.4E-06 49.1 2.8 21 454-474 21-41 (183)
471 1mh1_A RAC1; GTP-binding, GTPa 90.3 0.13 4.4E-06 49.0 2.8 21 454-474 8-28 (186)
472 2gf9_A RAS-related protein RAB 90.3 0.13 4.4E-06 49.6 2.8 21 454-474 25-45 (189)
473 1ksh_A ARF-like protein 2; sma 90.3 0.13 4.4E-06 49.3 2.8 22 453-474 20-41 (186)
474 2bov_A RAla, RAS-related prote 90.3 0.13 4.4E-06 50.0 2.8 21 454-474 17-37 (206)
475 1vg8_A RAS-related protein RAB 90.2 0.13 4.6E-06 50.0 2.9 21 454-474 11-31 (207)
476 3tkl_A RAS-related protein RAB 90.2 0.13 4.5E-06 49.5 2.8 21 454-474 19-39 (196)
477 1m8p_A Sulfate adenylyltransfe 90.1 0.15 5.2E-06 59.2 3.7 32 454-485 399-434 (573)
478 1zbd_A Rabphilin-3A; G protein 90.1 0.13 4.6E-06 50.0 2.8 22 453-474 10-31 (203)
479 3ihw_A Centg3; RAS, centaurin, 90.1 0.14 4.7E-06 49.6 2.8 21 454-474 23-43 (184)
480 1ega_A Protein (GTP-binding pr 90.1 0.13 4.3E-06 54.6 2.8 21 454-474 11-31 (301)
481 4edh_A DTMP kinase, thymidylat 90.0 0.13 4.5E-06 51.9 2.7 23 454-476 9-31 (213)
482 2iwr_A Centaurin gamma 1; ANK 90.0 0.11 3.8E-06 49.3 2.0 21 454-474 10-30 (178)
483 3bwd_D RAC-like GTP-binding pr 89.9 0.14 5E-06 48.5 2.8 21 454-474 11-31 (182)
484 1bif_A 6-phosphofructo-2-kinas 89.9 0.092 3.2E-06 59.3 1.6 25 453-477 41-65 (469)
485 2vf7_A UVRA2, excinuclease ABC 89.9 0.067 2.3E-06 64.7 0.5 34 442-475 512-548 (842)
486 1x3s_A RAS-related protein RAB 89.9 0.15 5E-06 49.0 2.8 21 454-474 18-38 (195)
487 2atv_A RERG, RAS-like estrogen 89.8 0.15 5.1E-06 49.5 2.9 22 453-474 30-51 (196)
488 3c5c_A RAS-like protein 12; GD 89.8 0.15 5.2E-06 49.3 2.9 21 454-474 24-44 (187)
489 3t34_A Dynamin-related protein 89.8 0.11 3.6E-06 56.5 1.9 30 444-474 28-57 (360)
490 1zd9_A ADP-ribosylation factor 89.8 0.15 5.1E-06 49.2 2.8 21 454-474 25-45 (188)
491 2wsm_A Hydrogenase expression/ 89.8 0.13 4.6E-06 50.9 2.5 23 453-475 32-54 (221)
492 2fg5_A RAB-22B, RAS-related pr 89.8 0.14 4.6E-06 49.7 2.5 21 454-474 26-46 (192)
493 2j9r_A Thymidine kinase; TK1, 89.7 0.17 6E-06 51.2 3.3 29 454-482 31-62 (214)
494 2cjw_A GTP-binding protein GEM 89.7 0.15 5.1E-06 49.8 2.8 20 454-473 9-28 (192)
495 3dz8_A RAS-related protein RAB 89.7 0.13 4.6E-06 49.6 2.4 22 454-475 26-47 (191)
496 3reg_A RHO-like small GTPase; 89.7 0.15 5.2E-06 49.3 2.8 21 454-474 26-46 (194)
497 1z06_A RAS-related protein RAB 89.7 0.16 5.3E-06 49.0 2.9 21 454-474 23-43 (189)
498 3v9p_A DTMP kinase, thymidylat 89.7 0.13 4.3E-06 52.7 2.2 23 454-476 28-50 (227)
499 2a5j_A RAS-related protein RAB 89.7 0.16 5.3E-06 49.2 2.8 21 454-474 24-44 (191)
500 2p5s_A RAS and EF-hand domain 89.6 0.16 5.3E-06 49.6 2.8 22 453-474 30-51 (199)
No 1
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=100.00 E-value=1.4e-61 Score=551.79 Aligned_cols=371 Identities=46% Similarity=0.723 Sum_probs=319.3
Q ss_pred CccccccCccCchHHHHHHHHHHHhccccccccccCcccCCceEEECCCCCchhHHHHHhhhhccccEEEeeccceehhh
Q 003795 412 GVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIY 491 (795)
Q Consensus 412 ~~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~se~~~~~ 491 (795)
...+.|+++.|+++.+..+.+++..+.++..+.++|+.+|+|++|+||||||||+|+++||++++.+++.++++++...+
T Consensus 10 ~~~~~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~~ 89 (476)
T 2ce7_A 10 NKRVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELF 89 (476)
T ss_dssp SCCCCGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTCC
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccchhhHHhHHHHHHhcCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcccCCCcEEEEeccCCCCCCCc
Q 003795 492 VGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDP 571 (795)
Q Consensus 492 ~g~~~~~l~~lf~~ar~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVIatTN~~d~Ldp 571 (795)
+|.+...++.+|..++...|||+||||+|.+...++...+++......+++.|+..|+++....+++||++||.++.+||
T Consensus 90 ~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld~ 169 (476)
T 2ce7_A 90 VGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDP 169 (476)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSCG
T ss_pred hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhch
Confidence 99888889999999999999999999999998776543334556677889999999998877789999999999999999
Q ss_pred cccCCCcccceecCCCCCHHHHHHHHHHHHccCCCCChhhHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCccCHHHH
Q 003795 572 ALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDL 651 (795)
Q Consensus 572 aLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~~~~~d~dl~~LA~~t~G~sgadL~~lv~~A~~~A~~~~~~~It~edl 651 (795)
+++|||||++.|.|++|+.++|.+|++.+++..++.+++++..++..++|++|+||.++|++|+..|.+++...|+.+|+
T Consensus 170 allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l~~la~~t~G~sgadL~~lv~~Aal~A~~~~~~~I~~~dl 249 (476)
T 2ce7_A 170 ALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREGRDKITMKDF 249 (476)
T ss_dssp GGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHH
T ss_pred hhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhhHHHHHHhcCCCcHHHHHHHHHHHHHHHHHcCCCeecHHHH
Confidence 99999999999999999999999999999998888888899999999999999999999999999999988889999999
Q ss_pred HHHHHHHHhccccc-ccccchhhhHHHHHHHHHHHHHHhcCCCCccceEEEecCCC-ccccceeecccchhhhhccccHH
Q 003795 652 LQAAQIEERGMLDR-KERSSETWRQVAINEAAMAVVAVNFPDLKNIEFVTIAPRAG-RELGYVRMKMDHMKFKEGMLSRQ 729 (795)
Q Consensus 652 ~~Al~~~~~~~~~~-~~~~~~~~~~va~hEaGhalva~~l~~~~~i~~vtI~pr~g-~~lG~~~~~~~e~~~~~~~~tr~ 729 (795)
..|+.....+...+ ...++.+++.++|||+|||++++++++.+++.+|+|.|| | .++||+++.|.++ .+++||.
T Consensus 250 ~~al~~v~~~~~~~~~~~~~~e~~~~a~~e~G~a~~~~~l~~~~~~~~~~i~pr-g~~alg~~~~~p~~~---~~~~~~~ 325 (476)
T 2ce7_A 250 EEAIDRVIAGPARKSLLISPAEKRIIAYHEAGHAVVSTVVPNGEPVHRISIIPR-GYKALGYTLHLPEED---KYLVSRN 325 (476)
T ss_dssp HHHHHHHC--------CCCHHHHHHHHHHHHHHHHHHHHSTTCCCCCEEECC---------------------CCSCBHH
T ss_pred HHHHHHHhcCccccchhhhcchhhhhHHHHhhhHHHhhccCCccccceeeeecC-cccccceEEEcCccc---ccccCHH
Confidence 99998654432221 234577899999999999999999999999999999999 6 8999999999876 6889999
Q ss_pred HHHHHHHHHhChHHHHHHHhCCCCcccchhhhHHHHHHHHHHHH-HhcCCCCCCCcccccc
Q 003795 730 SLLDHITVQLAPRAADELWCGEGQLSTIWAETADNARSAARTFV-LGGLSDKHFGLSNFWV 789 (795)
Q Consensus 730 ~ll~~I~vlLaGRaAEel~~G~~~vstGa~~Dl~~At~iA~~mV-~~Gm~~~~~g~~~~~~ 789 (795)
+|+++|+|+|||||||+++||+ +||||++||++||+||+.|| +||||++. |+++|..
T Consensus 326 ~l~~~i~~~l~Gr~ae~~~~g~--~~~ga~~Dl~~at~~a~~mv~~~gm~~~~-g~~~~~~ 383 (476)
T 2ce7_A 326 ELLDKLTALLGGRAAEEVVFGD--VTSGAANDIERATEIARNMVCQLGMSEEL-GPLAWGK 383 (476)
T ss_dssp HHHHHHHHHTHHHHHHHHHHSS--CCGGGHHHHHHHHHHHHHHHHTSCCCTTT-CSCCCCC
T ss_pred HHHHHHHHHHhHHHHHhhhcCC--CCcccHHHHHHHHHHHHHHHHHhCCCCcC-CceeecC
Confidence 9999999999999999999997 99999999999999999999 99999985 9998854
No 2
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=100.00 E-value=1.7e-58 Score=529.18 Aligned_cols=368 Identities=47% Similarity=0.693 Sum_probs=332.9
Q ss_pred ccccccCccCchHHHHHHHHHHHhccccccccccCcccCCceEEECCCCCchhHHHHHhhhhccccEEEeeccceehhhh
Q 003795 413 VDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYV 492 (795)
Q Consensus 413 ~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~se~~~~~~ 492 (795)
..+.|+++.|+++.+..+.+++..+.++..+.++++.+|+|++|+||||||||+|+++||+.++.+++.++++++.+.++
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~~ 105 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFV 105 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSCT
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhhh
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred ccchhhHHhHHHHHHhcCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcccCCCcEEEEeccCCCCCCCcc
Q 003795 493 GVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPA 572 (795)
Q Consensus 493 g~~~~~l~~lf~~ar~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVIatTN~~d~Ldpa 572 (795)
|.....++.+|+.+....|+++||||||.+...+....+.+.+.....++.++..|+++.....+++|++||.++.+|++
T Consensus 106 g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p~~LD~a 185 (499)
T 2dhr_A 106 GVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPA 185 (499)
T ss_dssp THHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGGGSCTT
T ss_pred hhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEecCChhhcCcc
Confidence 88888888999998878899999999999876654322233456677899999999998888889999999999999999
Q ss_pred ccCCCcccceecCCCCCHHHHHHHHHHHHccCCCCChhhHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHH
Q 003795 573 LVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLL 652 (795)
Q Consensus 573 LlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~~~~~d~dl~~LA~~t~G~sgadL~~lv~~A~~~A~~~~~~~It~edl~ 652 (795)
++||||||+.|.|++|+.++|.+|++.+++...+.+++++..+|..++|++|+||.++|++|+..|.+++...|+.+|+.
T Consensus 186 Llr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~l~~lA~~t~G~~gadL~~lv~~Aa~~A~~~~~~~It~~dl~ 265 (499)
T 2dhr_A 186 LLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLE 265 (499)
T ss_dssp TSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSSTTHHHHTTSCSCCHHHHHHHHHHHHHHHTTTCCSSCCSHHHH
T ss_pred cccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHH
Confidence 99999999999999999999999999999888888888999999999999999999999999999988888889999999
Q ss_pred HHHHHHHhcccc-cccccchhhhHHHHHHHHHHHHHHhcCCCCccceEEEecCCCccccceeeccc-chhhhhccccHHH
Q 003795 653 QAAQIEERGMLD-RKERSSETWRQVAINEAAMAVVAVNFPDLKNIEFVTIAPRAGRELGYVRMKMD-HMKFKEGMLSRQS 730 (795)
Q Consensus 653 ~Al~~~~~~~~~-~~~~~~~~~~~va~hEaGhalva~~l~~~~~i~~vtI~pr~g~~lG~~~~~~~-e~~~~~~~~tr~~ 730 (795)
.|++....+... ....++.+++.++|||+||+|+++++++.++|+++||.|| |+++||++ |. + +.+++||.+
T Consensus 266 ~al~~v~~~~~~~~~~~~~~e~~~~a~~e~g~av~~~~l~~~~~v~~~~i~pr-~~~~g~~~--p~q~---~~~~~t~~~ 339 (499)
T 2dhr_A 266 EAADRVMMLPAKKSLVLSPRDRRITAYHEAGHALAAHFLEHADGVHKVTIVPR-GRALGFMM--PRRE---DMLHWSRKR 339 (499)
T ss_dssp HHHHHHTTCSSSSCCCCCTTHHHHHHHHHHHHHHHHCCSSSCCCCCCEESCCS-SCTTCSSH--HHHT---TCCCCCHHH
T ss_pred HHHHHHhcccccccchhhHHHHhhhHHHHHHHHHHHhhcCCCCeeeEEEeecC-CCcCcccc--cchh---hhhccCHHH
Confidence 999876544321 1244577899999999999999999999999999999999 78999998 54 3 368899999
Q ss_pred HHHHHHHHhChHHHHHHHhCCCCcccchhhhHHHHHHHHHHHH-HhcCCCCCCCcccccc
Q 003795 731 LLDHITVQLAPRAADELWCGEGQLSTIWAETADNARSAARTFV-LGGLSDKHFGLSNFWV 789 (795)
Q Consensus 731 ll~~I~vlLaGRaAEel~~G~~~vstGa~~Dl~~At~iA~~mV-~~Gm~~~~~g~~~~~~ 789 (795)
|+++|+++|||||||+++||+ +||||++||++||+||+.|| +||||++. |+++|..
T Consensus 340 l~~~i~~~lgGr~ae~~~~g~--~~~ga~~Dl~~at~~a~~mv~~~gm~~~~-g~~~~~~ 396 (499)
T 2dhr_A 340 LLDQIAVALAGRAAEEIVFDD--VTTGAENDFRQATELARRMITEWGMHPEF-GPVAYAV 396 (499)
T ss_dssp HHHHHHHHHHHHHHHHHHSCS--CCBCCCHHHHHHHHHHHHHHTTSCCCSSS-CSCCCCC
T ss_pred HHHHHHHHhhhHhHHHhhhcc--cCcccHHHHHHHHHHHHHHHHHhCCCCCC-CceeecC
Confidence 999999999999999999996 99999999999999999999 99999985 9998864
No 3
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.9e-44 Score=396.02 Aligned_cols=250 Identities=39% Similarity=0.666 Sum_probs=236.9
Q ss_pred ccCccccccCccCchHHHHHHHHHHHh-ccccccccccCcccCCceEEECCCCCchhHHHHHhhhhccccEEEeecccee
Q 003795 410 ERGVDVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFV 488 (795)
Q Consensus 410 ~~~~~~~f~~~~gl~~~~~~l~~lv~~-~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~se~~ 488 (795)
...+++.|++++|+++++.++++++.. +.++..|.++|+.+|+|+||+||||||||+||+++|++++.+|+.++++++.
T Consensus 140 ~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~ 219 (405)
T 4b4t_J 140 EKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELV 219 (405)
T ss_dssp ECSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGS
T ss_pred cCCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhh
Confidence 345789999999999999999999987 7899999999999999999999999999999999999999999999999999
Q ss_pred hhhhccchhhHHhHHHHHHhcCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcccCCCcEEEEeccCCCCC
Q 003795 489 EIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDI 568 (795)
Q Consensus 489 ~~~~g~~~~~l~~lf~~ar~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVIatTN~~d~ 568 (795)
..|+|.++..++.+|..|+..+|||+||||||.+++.|....++++...+.+++.||..||++....+|+||+|||+|+.
T Consensus 220 sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~ 299 (405)
T 4b4t_J 220 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDI 299 (405)
T ss_dssp CSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSS
T ss_pred ccccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhh
Confidence 99999999999999999999999999999999999887765556666778899999999999999999999999999999
Q ss_pred CCccccCCCcccceecCCCCCHHHHHHHHHHHHccCCCCChhhHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCccCH
Q 003795 569 LDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITT 648 (795)
Q Consensus 569 LdpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~~~~~d~dl~~LA~~t~G~sgadL~~lv~~A~~~A~~~~~~~It~ 648 (795)
|||+|+||||||+.|+|++|+.++|.+||+.|+++.++..++|+..+|..|+||||+||.++|++|+..|.++++..|+.
T Consensus 300 LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~SGADi~~l~~eA~~~Air~~~~~vt~ 379 (405)
T 4b4t_J 300 LDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRERRIHVTQ 379 (405)
T ss_dssp SCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCSBCCH
T ss_pred CCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCCcCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 003795 649 DDLLQAAQIEE 659 (795)
Q Consensus 649 edl~~Al~~~~ 659 (795)
+||..|+....
T Consensus 380 ~Df~~Al~~v~ 390 (405)
T 4b4t_J 380 EDFELAVGKVM 390 (405)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999998543
No 4
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.8e-43 Score=387.71 Aligned_cols=251 Identities=38% Similarity=0.671 Sum_probs=237.7
Q ss_pred ccCccccccCccCchHHHHHHHHHHHh-ccccccccccCcccCCceEEECCCCCchhHHHHHhhhhccccEEEeecccee
Q 003795 410 ERGVDVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFV 488 (795)
Q Consensus 410 ~~~~~~~f~~~~gl~~~~~~l~~lv~~-~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~se~~ 488 (795)
...+++.|++++|+++++.++.+.+.. +.++..|..+|+.+|+|+||+||||||||+||++||++++.+|+.++++++.
T Consensus 174 ~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~ 253 (437)
T 4b4t_I 174 DKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELI 253 (437)
T ss_dssp ESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGC
T ss_pred ccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhh
Confidence 456789999999999999999999987 7789999999999999999999999999999999999999999999999999
Q ss_pred hhhhccchhhHHhHHHHHHhcCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcccCCCcEEEEeccCCCCC
Q 003795 489 EIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDI 568 (795)
Q Consensus 489 ~~~~g~~~~~l~~lf~~ar~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVIatTN~~d~ 568 (795)
+.|+|.++..++.+|..++..+|||+||||+|.+++.|.....++......+++.||..+|++....+|+||+|||+++.
T Consensus 254 sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~ 333 (437)
T 4b4t_I 254 QKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIET 333 (437)
T ss_dssp CSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTT
T ss_pred hccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhh
Confidence 99999999999999999999999999999999999988766656666778899999999999999999999999999999
Q ss_pred CCccccCCCcccceecCCCCCHHHHHHHHHHHHccCCCCChhhHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCccCH
Q 003795 569 LDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITT 648 (795)
Q Consensus 569 LdpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~~~~~d~dl~~LA~~t~G~sgadL~~lv~~A~~~A~~~~~~~It~ 648 (795)
|||||+||||||+.|+|++|+.++|.+||+.|+++..+..++|+..||..|+||||+||.++|++|+..|.++++..|+.
T Consensus 334 LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eA~~~Air~~~~~It~ 413 (437)
T 4b4t_I 334 LDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRERRMQVTA 413 (437)
T ss_dssp CCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCSCBCH
T ss_pred cCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCccCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh
Q 003795 649 DDLLQAAQIEER 660 (795)
Q Consensus 649 edl~~Al~~~~~ 660 (795)
+||..|++....
T Consensus 414 eDf~~Al~rv~~ 425 (437)
T 4b4t_I 414 EDFKQAKERVMK 425 (437)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC
Confidence 999999985543
No 5
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-42 Score=388.15 Aligned_cols=250 Identities=37% Similarity=0.609 Sum_probs=236.3
Q ss_pred cCccccccCccCchHHHHHHHHHHHh-ccccccccccCcccCCceEEECCCCCchhHHHHHhhhhccccEEEeeccceeh
Q 003795 411 RGVDVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVE 489 (795)
Q Consensus 411 ~~~~~~f~~~~gl~~~~~~l~~lv~~-~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~se~~~ 489 (795)
..++++|++++|+++++..+.+++.. +.++..|.++|+.+|+|+||+||||||||+||++||++++.+|+.++++++.+
T Consensus 202 e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~s 281 (467)
T 4b4t_H 202 EKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQ 281 (467)
T ss_dssp SSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCC
T ss_pred CCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhc
Confidence 45789999999999999999998876 78899999999999999999999999999999999999999999999999999
Q ss_pred hhhccchhhHHhHHHHHHhcCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcccCCCcEEEEeccCCCCCC
Q 003795 490 IYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDIL 569 (795)
Q Consensus 490 ~~~g~~~~~l~~lf~~ar~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVIatTN~~d~L 569 (795)
.|+|.+...++.+|..++..+|||+||||+|.++..|.....++......+++.+|..||++....+|+||+|||+++.|
T Consensus 282 k~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~L 361 (467)
T 4b4t_H 282 KYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTL 361 (467)
T ss_dssp CSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTSB
T ss_pred ccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcccC
Confidence 99999999999999999999999999999999998887655555667778999999999999999999999999999999
Q ss_pred CccccCCCcccceecCCCCCHHHHHHHHHHHHccCCCCChhhHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCccCHH
Q 003795 570 DPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTD 649 (795)
Q Consensus 570 dpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~~~~~d~dl~~LA~~t~G~sgadL~~lv~~A~~~A~~~~~~~It~e 649 (795)
||+|+||||||+.|+|++|+.++|.+||+.|+++..+..++|+..||..|.||||+||.++|++|+..|.++++..|+.+
T Consensus 362 DpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eAa~~Air~~~~~it~~ 441 (467)
T 4b4t_H 362 DPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEK 441 (467)
T ss_dssp CHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHTCSSBCHH
T ss_pred ChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCccCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 003795 650 DLLQAAQIEER 660 (795)
Q Consensus 650 dl~~Al~~~~~ 660 (795)
||..|++....
T Consensus 442 Df~~Al~kV~~ 452 (467)
T 4b4t_H 442 DFLKAVDKVIS 452 (467)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 99999986544
No 6
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.8e-42 Score=386.46 Aligned_cols=248 Identities=39% Similarity=0.665 Sum_probs=234.5
Q ss_pred ccCccccccCccCchHHHHHHHHHHHh-ccccccccccCcccCCceEEECCCCCchhHHHHHhhhhccccEEEeecccee
Q 003795 410 ERGVDVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFV 488 (795)
Q Consensus 410 ~~~~~~~f~~~~gl~~~~~~l~~lv~~-~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~se~~ 488 (795)
...+.++|++++|+++++..+.+.+.. +.++..|.+.|+.+|+|+|||||||||||+||++||++++.+|+.++++++.
T Consensus 173 ~~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~ 252 (434)
T 4b4t_M 173 DEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLV 252 (434)
T ss_dssp ESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGC
T ss_pred CCCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhh
Confidence 346788999999999999999987665 6789999999999999999999999999999999999999999999999999
Q ss_pred hhhhccchhhHHhHHHHHHhcCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcccCCCcEEEEeccCCCCC
Q 003795 489 EIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDI 568 (795)
Q Consensus 489 ~~~~g~~~~~l~~lf~~ar~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVIatTN~~d~ 568 (795)
..|+|.+...++.+|..++...|||+||||+|.+++.|.....++......+++.||..||++....+|+||+|||+++.
T Consensus 253 ~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~ 332 (434)
T 4b4t_M 253 QMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDV 332 (434)
T ss_dssp SSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCC
T ss_pred hcccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchh
Confidence 99999999999999999999999999999999999888765556666777899999999999999999999999999999
Q ss_pred CCccccCCCcccceecCCCCCHHHHHHHHHHHHccCCCCChhhHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCccCH
Q 003795 569 LDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITT 648 (795)
Q Consensus 569 LdpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~~~~~d~dl~~LA~~t~G~sgadL~~lv~~A~~~A~~~~~~~It~ 648 (795)
|||+|+||||||+.|+|++|+.++|.+||+.|+++.++..++|+..||..|.||||+||.++|++|+..|.++++..|+.
T Consensus 333 LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~sGADi~~l~~eA~~~a~r~~~~~i~~ 412 (434)
T 4b4t_M 333 LDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALRNGQSSVKH 412 (434)
T ss_dssp CCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTCSSBCH
T ss_pred cCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCcCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 003795 649 DDLLQAAQI 657 (795)
Q Consensus 649 edl~~Al~~ 657 (795)
+||..|+..
T Consensus 413 ~Df~~Al~~ 421 (434)
T 4b4t_M 413 EDFVEGISE 421 (434)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHHHH
Confidence 999999874
No 7
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.6e-42 Score=386.97 Aligned_cols=249 Identities=41% Similarity=0.697 Sum_probs=236.1
Q ss_pred cCccccccCccCchHHHHHHHHHHHh-ccccccccccCcccCCceEEECCCCCchhHHHHHhhhhccccEEEeeccceeh
Q 003795 411 RGVDVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVE 489 (795)
Q Consensus 411 ~~~~~~f~~~~gl~~~~~~l~~lv~~-~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~se~~~ 489 (795)
..+++.|++++|+++++..+.+++.. +.++..|.++|+.+|+|+||+||||||||+||++||++++.+|+.++++++.+
T Consensus 174 ~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~s 253 (437)
T 4b4t_L 174 EQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVD 253 (437)
T ss_dssp ESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCC
T ss_pred cCCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhcc
Confidence 45789999999999999999999987 78899999999999999999999999999999999999999999999999999
Q ss_pred hhhccchhhHHhHHHHHHhcCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcccCCCcEEEEeccCCCCCC
Q 003795 490 IYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDIL 569 (795)
Q Consensus 490 ~~~g~~~~~l~~lf~~ar~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVIatTN~~d~L 569 (795)
.|+|.+...++.+|..++...|||+||||+|.+++.|...+.+++.....+++.||..||++....+|+||+|||+|+.|
T Consensus 254 k~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~L 333 (437)
T 4b4t_L 254 KYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTL 333 (437)
T ss_dssp SSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSS
T ss_pred ccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchhh
Confidence 99999999999999999999999999999999998887655566667788999999999999999999999999999999
Q ss_pred CccccCCCcccceecCCCCCHHHHHHHHHHHHccCCCCChhhHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCccCHH
Q 003795 570 DPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTD 649 (795)
Q Consensus 570 dpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~~~~~d~dl~~LA~~t~G~sgadL~~lv~~A~~~A~~~~~~~It~e 649 (795)
||+|+||||||+.|+|++|+.++|.+||+.|+++.+...++|+..+|..|.||||+||.++|++|+..|.++++..|+.+
T Consensus 334 DpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA~~t~G~sGADi~~l~~eA~~~air~~~~~i~~~ 413 (437)
T 4b4t_L 334 DPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRDDRDHINPD 413 (437)
T ss_dssp CTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHHHTCCSCCHHHHHHHHHHHHHHHHHTTCSSBCHH
T ss_pred CHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHH
Confidence 99999999999999999999999999999999999988999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 003795 650 DLLQAAQIEE 659 (795)
Q Consensus 650 dl~~Al~~~~ 659 (795)
||..|+....
T Consensus 414 d~~~Al~~v~ 423 (437)
T 4b4t_L 414 DLMKAVRKVA 423 (437)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998543
No 8
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-41 Score=380.39 Aligned_cols=250 Identities=37% Similarity=0.602 Sum_probs=235.8
Q ss_pred ccCccccccCccCchHHHHHHHHHHHh-ccccccccccCcccCCceEEECCCCCchhHHHHHhhhhccccEEEeecccee
Q 003795 410 ERGVDVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFV 488 (795)
Q Consensus 410 ~~~~~~~f~~~~gl~~~~~~l~~lv~~-~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~se~~ 488 (795)
...+++.|++++|+++++..+.+.+.. +.++..|..+|+.+|+|+||+||||||||+||++||++++.+++.++++++.
T Consensus 164 ~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~ 243 (428)
T 4b4t_K 164 NEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFV 243 (428)
T ss_dssp ESSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTC
T ss_pred CCCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhh
Confidence 345789999999999999999998875 6789999999999999999999999999999999999999999999999999
Q ss_pred hhhhccchhhHHhHHHHHHhcCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcccCCCcEEEEeccCCCCC
Q 003795 489 EIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDI 568 (795)
Q Consensus 489 ~~~~g~~~~~l~~lf~~ar~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVIatTN~~d~ 568 (795)
+.|+|.+...++.+|..++..+|||+||||+|.+++.|.....+++.....+++.||.+||++....+|+||+|||+++.
T Consensus 244 ~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~~ 323 (428)
T 4b4t_K 244 HKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADT 323 (428)
T ss_dssp CSSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSSS
T ss_pred ccccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhh
Confidence 99999999999999999999999999999999999988766666667778899999999999999999999999999999
Q ss_pred CCccccCCCcccceecCC-CCCHHHHHHHHHHHHccCCCCChhhHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCccC
Q 003795 569 LDPALVRPGRFDRKIFIP-KPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEIT 647 (795)
Q Consensus 569 LdpaLlrpgRFd~~I~~~-~Pd~~eR~~Il~~~l~~~~~~~d~dl~~LA~~t~G~sgadL~~lv~~A~~~A~~~~~~~It 647 (795)
|||+|+||||||+.|+|| +|+.++|..||+.|+++.++.+++|+..+|..|.||||+||.++|++|+..|.++++..|+
T Consensus 324 LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t~G~sgadi~~l~~eA~~~a~r~~~~~i~ 403 (428)
T 4b4t_K 324 LDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVIL 403 (428)
T ss_dssp CCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTCSSBC
T ss_pred cChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCC
Confidence 999999999999999996 8999999999999999999989999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 003795 648 TDDLLQAAQIEE 659 (795)
Q Consensus 648 ~edl~~Al~~~~ 659 (795)
.+||..|+....
T Consensus 404 ~~d~~~A~~~~~ 415 (428)
T 4b4t_K 404 QSDLEEAYATQV 415 (428)
T ss_dssp HHHHHHHHHHHS
T ss_pred HHHHHHHHHHhh
Confidence 999999987543
No 9
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=6.5e-37 Score=366.06 Aligned_cols=230 Identities=41% Similarity=0.748 Sum_probs=183.1
Q ss_pred CccccccCccCchHHHHHHHHHHHh-ccccccccccCcccCCceEEECCCCCchhHHHHHhhhhccccEEEeeccceehh
Q 003795 412 GVDVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEI 490 (795)
Q Consensus 412 ~~~~~f~~~~gl~~~~~~l~~lv~~-~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~se~~~~ 490 (795)
.+.+.|+++.|+++++..+.+++.+ +.++..|.+.|...|+|+||+||||||||++|++||++++.+|+.++++++.+.
T Consensus 471 ~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~ 550 (806)
T 3cf2_A 471 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTM 550 (806)
T ss_dssp CCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTT
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhcc
Confidence 4678899999999999999998876 467889999999999999999999999999999999999999999999999999
Q ss_pred hhccchhhHHhHHHHHHhcCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcccCCCcEEEEeccCCCCCCC
Q 003795 491 YVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILD 570 (795)
Q Consensus 491 ~~g~~~~~l~~lf~~ar~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVIatTN~~d~Ld 570 (795)
|+|.++..++.+|+.|+...||||||||||.+++.|+...++++...+.++++||.+||++....+|+||+|||+|+.||
T Consensus 551 ~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~~lD 630 (806)
T 3cf2_A 551 WFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIID 630 (806)
T ss_dssp TCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEECC-CCSSSSC
T ss_pred ccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCchhCC
Confidence 99999999999999999999999999999999988865544555566779999999999999999999999999999999
Q ss_pred ccccCCCcccceecCCCCCHHHHHHHHHHHHccCCCCChhhHHHHHhhCCCCcHHHHHHHHHHHHHHHHHc
Q 003795 571 PALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRD 641 (795)
Q Consensus 571 paLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~~~~~d~dl~~LA~~t~G~sgadL~~lv~~A~~~A~~~ 641 (795)
|+++||||||+.|+|++|+.++|.+||+.++++.++..++|+..||..|+||||+||.++|++|+..|.++
T Consensus 631 ~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~dl~~la~~t~g~SGadi~~l~~~A~~~a~r~ 701 (806)
T 3cf2_A 631 PAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRE 701 (806)
T ss_dssp HHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC----------------CHHHHHHHHHHHHHHH
T ss_pred HhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999875
No 10
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=1.1e-34 Score=347.00 Aligned_cols=243 Identities=41% Similarity=0.684 Sum_probs=225.4
Q ss_pred CccccccCccCchHHHHHHHHHHHh-ccccccccccCcccCCceEEECCCCCchhHHHHHhhhhccccEEEeeccceehh
Q 003795 412 GVDVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEI 490 (795)
Q Consensus 412 ~~~~~f~~~~gl~~~~~~l~~lv~~-~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~se~~~~ 490 (795)
.+.+.|+++.|+++.+..+++++.. +.++..|..+|..+|+||||+||||||||+||++||++++.+++.++++++.+.
T Consensus 198 ~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk 277 (806)
T 3cf2_A 198 LNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 277 (806)
T ss_dssp SSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSS
T ss_pred CCCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhcc
Confidence 4678999999999999999999886 789999999999999999999999999999999999999999999999999999
Q ss_pred hhccchhhHHhHHHHHHhcCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcccCCCcEEEEeccCCCCCCC
Q 003795 491 YVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILD 570 (795)
Q Consensus 491 ~~g~~~~~l~~lf~~ar~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVIatTN~~d~Ld 570 (795)
|+|.++..++.+|+.|+...||||||||||.+++.+.. ++++..+.++++|+..|+++..+.+|+||++||+++.||
T Consensus 278 ~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~---~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD 354 (806)
T 3cf2_A 278 LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREK---THGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSID 354 (806)
T ss_dssp CTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTT---CCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTSC
T ss_pred cchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCC---CCChHHHHHHHHHHHHHhcccccCCEEEEEecCChhhcC
Confidence 99999999999999999999999999999999887643 445666789999999999998889999999999999999
Q ss_pred ccccCCCcccceecCCCCCHHHHHHHHHHHHccCCCCChhhHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcC--------
Q 003795 571 PALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDG-------- 642 (795)
Q Consensus 571 paLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~~~~~d~dl~~LA~~t~G~sgadL~~lv~~A~~~A~~~~-------- 642 (795)
|+|+||||||+.|+|+.|+.++|.+||+.|+++..+..++|+..+|..|.||+|+||.++|++|+..|.++.
T Consensus 355 ~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~~A~~r~~~~i~~~~ 434 (806)
T 3cf2_A 355 PALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLED 434 (806)
T ss_dssp TTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHHGGGTC
T ss_pred HHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccccccccc
Confidence 999999999999999999999999999999999988899999999999999999999999999999887652
Q ss_pred ---------CCccCHHHHHHHHHH
Q 003795 643 ---------RTEITTDDLLQAAQI 657 (795)
Q Consensus 643 ---------~~~It~edl~~Al~~ 657 (795)
...|+.+||..|+..
T Consensus 435 ~~~~~e~~~~~~v~~~Df~~Al~~ 458 (806)
T 3cf2_A 435 ETIDAEVMNSLAVTMDDFRWALSQ 458 (806)
T ss_dssp CCCSHHHHHHCEECTTHHHHHHSS
T ss_pred cccchhhhccceeeHHHHHHHHHh
Confidence 134788899998863
No 11
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=100.00 E-value=7e-32 Score=283.08 Aligned_cols=250 Identities=50% Similarity=0.841 Sum_probs=221.2
Q ss_pred ccCccccccCccCchHHHHHHHHHHHhccccccccccCcccCCceEEECCCCCchhHHHHHhhhhccccEEEeeccceeh
Q 003795 410 ERGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVE 489 (795)
Q Consensus 410 ~~~~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~se~~~ 489 (795)
...+...|+++.|++..+..+.+++..+..+..+...+...+.|++|+||||||||+++++|++.++.+++.++++++..
T Consensus 4 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~ 83 (257)
T 1lv7_A 4 EDQIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVE 83 (257)
T ss_dssp ECSSCCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTT
T ss_pred ccCCCCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHH
Confidence 34567889999999999999999998888888889999999999999999999999999999999999999999999988
Q ss_pred hhhccchhhHHhHHHHHHhcCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcccCCCcEEEEeccCCCCCC
Q 003795 490 IYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDIL 569 (795)
Q Consensus 490 ~~~g~~~~~l~~lf~~ar~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVIatTN~~d~L 569 (795)
.+.|.....++.+|+.+....|+++||||+|.+...+......+.+.....++.++..++++....+++||++||.++.+
T Consensus 84 ~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~l 163 (257)
T 1lv7_A 84 MFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVL 163 (257)
T ss_dssp SCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTTS
T ss_pred HhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCchhC
Confidence 88888888889999999988899999999999987654332334445567889999999988888889999999999999
Q ss_pred CccccCCCcccceecCCCCCHHHHHHHHHHHHccCCCCChhhHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCccCHH
Q 003795 570 DPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTD 649 (795)
Q Consensus 570 dpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~~~~~d~dl~~LA~~t~G~sgadL~~lv~~A~~~A~~~~~~~It~e 649 (795)
+++++|+|||++.+.++.|+.++|.+|++.+++..++.++.++..++..+.||+++||.++|++|+..|.+++...|+.+
T Consensus 164 ~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~~~i~~~ 243 (257)
T 1lv7_A 164 DPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMV 243 (257)
T ss_dssp CGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHH
T ss_pred CHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCcccHH
Confidence 99999999999999999999999999999999888888888899999999999999999999999999999988999999
Q ss_pred HHHHHHHHHH
Q 003795 650 DLLQAAQIEE 659 (795)
Q Consensus 650 dl~~Al~~~~ 659 (795)
|+..|+....
T Consensus 244 ~~~~a~~~~~ 253 (257)
T 1lv7_A 244 EFEKAKDKIM 253 (257)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 9999987543
No 12
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.98 E-value=4.2e-32 Score=289.20 Aligned_cols=242 Identities=38% Similarity=0.663 Sum_probs=201.2
Q ss_pred ccccccCccCchHHHHHHHHHH-HhccccccccccCcccCCceEEECCCCCchhHHHHHhhhhccccEEEeeccceehhh
Q 003795 413 VDVKFSDVAGLGKIRLELEEIV-KFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIY 491 (795)
Q Consensus 413 ~~~~f~~~~gl~~~~~~l~~lv-~~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~se~~~~~ 491 (795)
+.+.|+++.|+++.+..+.+.+ ..+.++..+.++++.+++|++|+||||||||||+++||+.++..++.+++.++...+
T Consensus 5 ~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~~ 84 (274)
T 2x8a_A 5 PNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMY 84 (274)
T ss_dssp -------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSST
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhhh
Confidence 5688999999999999998754 567788899999999999999999999999999999999999999999999988888
Q ss_pred hccchhhHHhHHHHHHhcCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcccCCCcEEEEeccCCCCCCCc
Q 003795 492 VGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDP 571 (795)
Q Consensus 492 ~g~~~~~l~~lf~~ar~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVIatTN~~d~Ldp 571 (795)
.+.....++.+|+.++...|+++++||+|.+...+... ........++.++..|++......++++++||+|+.||+
T Consensus 85 ~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~---~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~ 161 (274)
T 2x8a_A 85 VGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDR---ETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDP 161 (274)
T ss_dssp THHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC------------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCH
T ss_pred hhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCC---cchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCH
Confidence 88888889999999988899999999999876544221 111122467889999999888888999999999999999
Q ss_pred cccCCCcccceecCCCCCHHHHHHHHHHHHcc---CCCCChhhHHHHHhhC--CCCcHHHHHHHHHHHHHHHHHc-----
Q 003795 572 ALVRPGRFDRKIFIPKPGLIGRMEILKVHARK---KPMADDVDYLAVASMT--DGMVGAELANIVEVAAINMMRD----- 641 (795)
Q Consensus 572 aLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~---~~~~~d~dl~~LA~~t--~G~sgadL~~lv~~A~~~A~~~----- 641 (795)
+++||||||+.|+++.|+.++|.+||+.+++. .....++++..+|..+ .||||+||.++|++|+..|.++
T Consensus 162 al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~~a~~~a~~~~~~~~ 241 (274)
T 2x8a_A 162 AILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEMARQ 241 (274)
T ss_dssp HHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHHHHHHHHHHHHC---
T ss_pred hhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999854 3455788999999875 4999999999999999988764
Q ss_pred ------CCCccCHHHHHHHHHH
Q 003795 642 ------GRTEITTDDLLQAAQI 657 (795)
Q Consensus 642 ------~~~~It~edl~~Al~~ 657 (795)
+...|+.+||..|+..
T Consensus 242 ~~~~~~~~~~i~~~df~~al~~ 263 (274)
T 2x8a_A 242 KSGNEKGELKVSHKHFEEAFKK 263 (274)
T ss_dssp --------CCBCHHHHHHHHTT
T ss_pred cccccccCCeecHHHHHHHHHH
Confidence 2346999999999764
No 13
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.97 E-value=3e-31 Score=277.77 Aligned_cols=247 Identities=55% Similarity=0.895 Sum_probs=215.2
Q ss_pred cccCccccccCccCchHHHHHHHHHHHhccccccccccCcccCCceEEECCCCCchhHHHHHhhhhccccEEEeecccee
Q 003795 409 LERGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFV 488 (795)
Q Consensus 409 ~~~~~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~se~~ 488 (795)
....+...|+++.|++..+..+++++..+..+..+..+++.++.|++|+||||||||||+++|++.++.+++.+++.++.
T Consensus 7 ~~~~~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~ 86 (254)
T 1ixz_A 7 LTEAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFV 86 (254)
T ss_dssp -CCCCSCCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred ccCCCCCCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHH
Confidence 34556789999999999999999999999888889999999999999999999999999999999999999999988877
Q ss_pred hhhhccchhhHHhHHHHHHhcCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcccCCCcEEEEeccCCCCC
Q 003795 489 EIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDI 568 (795)
Q Consensus 489 ~~~~g~~~~~l~~lf~~ar~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVIatTN~~d~ 568 (795)
..+.+.....+..+|+.+....|+++++||+|.+...+....+.........++.++..+++......++++++||.|+.
T Consensus 87 ~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~ 166 (254)
T 1ixz_A 87 EMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDI 166 (254)
T ss_dssp HSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGG
T ss_pred HHHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchh
Confidence 77777666778889999887789999999999987654321112334556778999999998877777899999999999
Q ss_pred CCccccCCCcccceecCCCCCHHHHHHHHHHHHccCCCCChhhHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCccCH
Q 003795 569 LDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITT 648 (795)
Q Consensus 569 LdpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~~~~~d~dl~~LA~~t~G~sgadL~~lv~~A~~~A~~~~~~~It~ 648 (795)
+|++++|+|||++.++++.|+.++|.+|++.+++...+..+.++..++..+.|++++||.+++++|+..|.+++...|+.
T Consensus 167 ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~~~~~a~~~a~~~~~~~I~~ 246 (254)
T 1ixz_A 167 LDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITM 246 (254)
T ss_dssp SCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCH
T ss_pred CCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCcCH
Confidence 99999999999999999999999999999999988877788889999999999999999999999999999888888999
Q ss_pred HHHHHHH
Q 003795 649 DDLLQAA 655 (795)
Q Consensus 649 edl~~Al 655 (795)
+|+.+|+
T Consensus 247 ~dl~~a~ 253 (254)
T 1ixz_A 247 KDLEEAA 253 (254)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 9999875
No 14
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.97 E-value=1.6e-31 Score=287.98 Aligned_cols=246 Identities=40% Similarity=0.720 Sum_probs=216.8
Q ss_pred cCccccccCccCchHHHHHHHHHHHh-ccccccccccCcccCCceEEECCCCCchhHHHHHhhhhccccEEEeeccceeh
Q 003795 411 RGVDVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVE 489 (795)
Q Consensus 411 ~~~~~~f~~~~gl~~~~~~l~~lv~~-~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~se~~~ 489 (795)
..+.+.|+++.|++..+..+.+++.. +..+..+..+++..+.+++|+||||||||+||++||+.++.+++.++++++..
T Consensus 8 ~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~ 87 (301)
T 3cf0_A 8 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT 87 (301)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHH
T ss_pred cCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHh
Confidence 34678899999999999999998875 56677888888999999999999999999999999999999999999999988
Q ss_pred hhhccchhhHHhHHHHHHhcCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcccCCCcEEEEeccCCCCCC
Q 003795 490 IYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDIL 569 (795)
Q Consensus 490 ~~~g~~~~~l~~lf~~ar~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVIatTN~~d~L 569 (795)
.++|.....++.+|+.+....|+++||||+|.+...++.....++.....+++.|+..++++....+++||++||.++.+
T Consensus 88 ~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~l 167 (301)
T 3cf0_A 88 MWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDII 167 (301)
T ss_dssp HHHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGGS
T ss_pred hhcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCcccc
Confidence 99999888899999999999999999999999987765433333344456788999999988778899999999999999
Q ss_pred CccccCCCcccceecCCCCCHHHHHHHHHHHHccCCCCChhhHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcC-------
Q 003795 570 DPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDG------- 642 (795)
Q Consensus 570 dpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~~~~~d~dl~~LA~~t~G~sgadL~~lv~~A~~~A~~~~------- 642 (795)
|++++|+|||+..|+|++|+.++|.+|++.+++......++++..++..+.||+|+||.++|++|+..|.++.
T Consensus 168 d~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~sg~dl~~l~~~a~~~a~~~~~~~~~~~ 247 (301)
T 3cf0_A 168 DPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRR 247 (301)
T ss_dssp CGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred ChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 9999999999999999999999999999999998887778899999999999999999999999998876532
Q ss_pred ------------------CCccCHHHHHHHHH
Q 003795 643 ------------------RTEITTDDLLQAAQ 656 (795)
Q Consensus 643 ------------------~~~It~edl~~Al~ 656 (795)
...|+.+||..|+.
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~ 279 (301)
T 3cf0_A 248 ERERQTNPSAMEVEEDDPVPEIRRDHFEEAMR 279 (301)
T ss_dssp ------------------CCCBCHHHHHHHHT
T ss_pred hhhcccccccccccccccCCccCHHHHHHHHH
Confidence 13578888888876
No 15
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.97 E-value=4.9e-30 Score=272.34 Aligned_cols=248 Identities=46% Similarity=0.775 Sum_probs=223.8
Q ss_pred cCccccccCccCchHHHHHHHHHHHh-ccccccccccCcccCCceEEECCCCCchhHHHHHhhhhccccEEEeeccceeh
Q 003795 411 RGVDVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVE 489 (795)
Q Consensus 411 ~~~~~~f~~~~gl~~~~~~l~~lv~~-~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~se~~~ 489 (795)
..+...|+++.|++..+..+.+.+.. +..+..+..+|...+.+++|+||||||||+|++++|+.++.+++.++++++..
T Consensus 10 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~ 89 (285)
T 3h4m_A 10 ERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVK 89 (285)
T ss_dssp SSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCC
T ss_pred CCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHH
Confidence 34578899999999999999887765 56677888889899999999999999999999999999999999999999998
Q ss_pred hhhccchhhHHhHHHHHHhcCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcccCCCcEEEEeccCCCCCC
Q 003795 490 IYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDIL 569 (795)
Q Consensus 490 ~~~g~~~~~l~~lf~~ar~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVIatTN~~d~L 569 (795)
.+.|.....+..+|..+....|+++||||+|.+...+.....++.......+..++..++++....+++||+|||.++.+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l 169 (285)
T 3h4m_A 90 KFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDIL 169 (285)
T ss_dssp CSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGGB
T ss_pred hccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchhc
Confidence 89988888889999999999999999999999987665443344556667888899999888778899999999999999
Q ss_pred CccccCCCcccceecCCCCCHHHHHHHHHHHHccCCCCChhhHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCccCHH
Q 003795 570 DPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTD 649 (795)
Q Consensus 570 dpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~~~~~d~dl~~LA~~t~G~sgadL~~lv~~A~~~A~~~~~~~It~e 649 (795)
++++++++||+..+.++.|+.++|.+|++.+++......+.++..++..+.|+++++|..+++.|...|..++...|+.+
T Consensus 170 ~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~a~~~~~~~I~~~ 249 (285)
T 3h4m_A 170 DPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIRELRDYVTMD 249 (285)
T ss_dssp CHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHHCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHH
T ss_pred CHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCcCCHH
Confidence 99999999999999999999999999999999888887888899999999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 003795 650 DLLQAAQIE 658 (795)
Q Consensus 650 dl~~Al~~~ 658 (795)
|+..|+...
T Consensus 250 d~~~al~~~ 258 (285)
T 3h4m_A 250 DFRKAVEKI 258 (285)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998844
No 16
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.97 E-value=1e-29 Score=270.28 Aligned_cols=244 Identities=56% Similarity=0.900 Sum_probs=213.9
Q ss_pred CccccccCccCchHHHHHHHHHHHhccccccccccCcccCCceEEECCCCCchhHHHHHhhhhccccEEEeeccceehhh
Q 003795 412 GVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIY 491 (795)
Q Consensus 412 ~~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~se~~~~~ 491 (795)
.+...|+++.|.+..+..+++++..+..+..+..+++.++.|++|+||||||||||+++|++.++..++.+++.++...+
T Consensus 34 ~~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~~~ 113 (278)
T 1iy2_A 34 APKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMF 113 (278)
T ss_dssp CCCCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHST
T ss_pred CCCCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHHHH
Confidence 46788999999999999999999999888889999999999999999999999999999999999999999988877777
Q ss_pred hccchhhHHhHHHHHHhcCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcccCCCcEEEEeccCCCCCCCc
Q 003795 492 VGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDP 571 (795)
Q Consensus 492 ~g~~~~~l~~lf~~ar~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVIatTN~~d~Ldp 571 (795)
.+.....+..+|+.+....|+++++||++.+...+..............++.++..+++......++++++||.|+.+|+
T Consensus 114 ~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~~ld~ 193 (278)
T 1iy2_A 114 VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDP 193 (278)
T ss_dssp TTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESCTTSSCH
T ss_pred hhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecCCchhCCH
Confidence 76666778889999987889999999999987654321112234456678899999998777777899999999999999
Q ss_pred cccCCCcccceecCCCCCHHHHHHHHHHHHccCCCCChhhHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCccCHHHH
Q 003795 572 ALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDL 651 (795)
Q Consensus 572 aLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~~~~~d~dl~~LA~~t~G~sgadL~~lv~~A~~~A~~~~~~~It~edl 651 (795)
+++|++||++.|+|+.|+.++|.+|++.+++...+.++.++..++..+.|++++||.+++++|+..|.+.+...|+.+|+
T Consensus 194 ~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~~~I~~~dl 273 (278)
T 1iy2_A 194 ALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDL 273 (278)
T ss_dssp HHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCCSBCHHHH
T ss_pred hHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHH
Confidence 99999999999999999999999999999988877788889999999999999999999999999998888888999999
Q ss_pred HHHH
Q 003795 652 LQAA 655 (795)
Q Consensus 652 ~~Al 655 (795)
.+|+
T Consensus 274 ~~a~ 277 (278)
T 1iy2_A 274 EEAA 277 (278)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 9875
No 17
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.97 E-value=6e-30 Score=267.58 Aligned_cols=247 Identities=45% Similarity=0.712 Sum_probs=195.4
Q ss_pred cccccCccCchHHHHHHHHHHHhccccccccccCcccCCceEEECCCCCchhHHHHHhhhhccccEEEeeccceehhhhc
Q 003795 414 DVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVG 493 (795)
Q Consensus 414 ~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~se~~~~~~g 493 (795)
.+.|+++.|++..+..+.+++..+..+..+...|...+++++|+||||||||++++++|++++.+++.++++++...+.+
T Consensus 2 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~ 81 (262)
T 2qz4_A 2 GVSFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIGG 81 (262)
T ss_dssp CCCTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSSTT
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhccC
Confidence 46799999999999999999998888888888999999999999999999999999999999999999999998888888
Q ss_pred cchhhHHhHHHHHHhcCCceeEhHHHHHHhhhccCCCC-CCcchHHHHHHHHHHhhhcccCCCcEEEEeccCCCCCCCcc
Q 003795 494 VGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKG-SGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPA 572 (795)
Q Consensus 494 ~~~~~l~~lf~~ar~~~p~Il~IDEID~l~~~r~~~~~-Sgge~~r~~l~~LL~~ld~~~~~~~VlVIatTN~~d~Ldpa 572 (795)
.....+..+|..+....|++++|||+|.+...+..... .........++.++..+++.....+++||++||.++.+|++
T Consensus 82 ~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~~ 161 (262)
T 2qz4_A 82 LGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGA 161 (262)
T ss_dssp HHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGSG
T ss_pred hhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCHH
Confidence 77778889999999888999999999999765432111 11233345788899889887777889999999999999999
Q ss_pred ccCCCcccceecCCCCCHHHHHHHHHHHHccCCCCChhh--HHHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCccCHHH
Q 003795 573 LVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVD--YLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDD 650 (795)
Q Consensus 573 LlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~~~~~d~d--l~~LA~~t~G~sgadL~~lv~~A~~~A~~~~~~~It~ed 650 (795)
++++|||+..++|++|+.++|.+|++.++.......+.+ ...++..+.|+++++|.++++.|+..|.+++...|+.+|
T Consensus 162 l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~~a~~~a~~~~~~~i~~~d 241 (262)
T 2qz4_A 162 LMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAREGHTSVHTLN 241 (262)
T ss_dssp GGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHHHHHTC--------CCBCC
T ss_pred HhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHH
Confidence 999999999999999999999999999998876655443 478999999999999999999999999888888999999
Q ss_pred HHHHHHHHHh
Q 003795 651 LLQAAQIEER 660 (795)
Q Consensus 651 l~~Al~~~~~ 660 (795)
+..|+.....
T Consensus 242 ~~~a~~~~~~ 251 (262)
T 2qz4_A 242 FEYAVERVLA 251 (262)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhcc
Confidence 9999885543
No 18
>2di4_A Zinc protease, cell division protein FTSH homolog; metalloproteinase, hexamer-ring, hydrolase; 2.79A {Aquifex aeolicus} SCOP: a.269.1.1
Probab=99.96 E-value=1.1e-30 Score=270.47 Aligned_cols=117 Identities=26% Similarity=0.331 Sum_probs=95.1
Q ss_pred ccchhhhHHHHHHHHHHHHHHhcCCCCccceEEEecCCCccccceeecccchhhhhccccHHHHHHHHHHHhChHHHHHH
Q 003795 668 RSSETWRQVAINEAAMAVVAVNFPDLKNIEFVTIAPRAGRELGYVRMKMDHMKFKEGMLSRQSLLDHITVQLAPRAADEL 747 (795)
Q Consensus 668 ~~~~~~~~va~hEaGhalva~~l~~~~~i~~vtI~pr~g~~lG~~~~~~~e~~~~~~~~tr~~ll~~I~vlLaGRaAEel 747 (795)
.++.+++++|||||||||+++++++.+||++|||+|| |.++|||++.|.++ .+++||.+|+++|+|+|||||||++
T Consensus 11 ~s~~ek~~vAyHEAGHAlva~~l~~~~pV~KVTIiPR-G~alG~t~~~P~ed---~~~~tk~~l~~~i~v~LgGRaAEel 86 (238)
T 2di4_A 11 ISPKEKEKIAIHEAGHALMGLVSDDDDKVHKISIIPR-GMALGVTQQLPIED---KHIYDKKDLYNKILVLLGGRAAEEV 86 (238)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCSSCCCCCCEECC--------------------CCCCBHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCCceeEEEEeec-CCcceEEEeCCccc---ccccCHHHHHHHHHHHHhHHHHHHH
Confidence 4589999999999999999999999999999999999 78999999999876 6899999999999999999999999
Q ss_pred HhCCCCcccchhhhHHHHHHHHHHHH-HhcCCCCCCCcccccc
Q 003795 748 WCGEGQLSTIWAETADNARSAARTFV-LGGLSDKHFGLSNFWV 789 (795)
Q Consensus 748 ~~G~~~vstGa~~Dl~~At~iA~~mV-~~Gm~~~~~g~~~~~~ 789 (795)
+||.+++||||++||++||.||+.|| .||||++. |+++|..
T Consensus 87 ifG~g~vttGA~~Dl~~AT~iAr~MV~~~GMs~~l-G~v~~~~ 128 (238)
T 2di4_A 87 FFGKDGITTGAENDLQRATDLAYRMVSMWGMSDKV-GPIAIRR 128 (238)
T ss_dssp HHHHHHCCGGGHHHHHHHHHHHHHHHHTSCCCTTT-CSCCCCC
T ss_pred HhCCCCcccChHhHHHHHHHHHHHHHHHhCCCCCC-CceeecC
Confidence 99655699999999999999999999 99999985 9999863
No 19
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.96 E-value=6.1e-29 Score=270.59 Aligned_cols=224 Identities=35% Similarity=0.580 Sum_probs=195.8
Q ss_pred CccccccCccCchHHHHHHHHHHHh-ccccccccccCcccCCceEEECCCCCchhHHHHHhhhhc-cccEEEeeccceeh
Q 003795 412 GVDVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEA-GVNFFSISASQFVE 489 (795)
Q Consensus 412 ~~~~~f~~~~gl~~~~~~l~~lv~~-~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el-~~~~~~is~se~~~ 489 (795)
.+.+.|+++.|++.++..+.+++.. +..+..+.. +...++|+||+||||||||+||+++|+++ +.+++.++++++..
T Consensus 6 ~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~ 84 (322)
T 1xwi_A 6 RPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVS 84 (322)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCT-TCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCC
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhC-CCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHh
Confidence 4678999999999999999988764 344555543 35566889999999999999999999999 88999999999999
Q ss_pred hhhccchhhHHhHHHHHHhcCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhccc-CCCcEEEEeccCCCCC
Q 003795 490 IYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE-GRGNVITIASTNRPDI 568 (795)
Q Consensus 490 ~~~g~~~~~l~~lf~~ar~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~-~~~~VlVIatTN~~d~ 568 (795)
.|+|.....++.+|..++...|+|+||||+|.+.+.+.. ...+..+.+++.|+..++++. ...+++||++||.++.
T Consensus 85 ~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~---~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ 161 (322)
T 1xwi_A 85 KWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSE---NESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWV 161 (322)
T ss_dssp SSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSS---CCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTT
T ss_pred hhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhcccccc---ccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCccc
Confidence 999999999999999999999999999999999876542 233455678899999999875 4678999999999999
Q ss_pred CCccccCCCcccceecCCCCCHHHHHHHHHHHHccCCCC-ChhhHHHHHhhCCCCcHHHHHHHHHHHHHHHHHc
Q 003795 569 LDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMRD 641 (795)
Q Consensus 569 LdpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~~~~-~d~dl~~LA~~t~G~sgadL~~lv~~A~~~A~~~ 641 (795)
+|++++| ||+..+++++|+.++|.+|++.+++..... .+.++..++..|.||+|+||.++|++|+..|.++
T Consensus 162 ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~A~~~a~r~ 233 (322)
T 1xwi_A 162 LDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRK 233 (322)
T ss_dssp SCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHHHHHTHHHHH
T ss_pred CCHHHHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999 999999999999999999999999877653 6788999999999999999999999999888764
No 20
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.96 E-value=2.5e-29 Score=273.19 Aligned_cols=230 Identities=35% Similarity=0.608 Sum_probs=196.0
Q ss_pred CcccccCccccccCccCchHHHHHHHHHHHhc-cccccccccCcccCCceEEECCCCCchhHHHHHhhhhccccEEEeec
Q 003795 406 PQYLERGVDVKFSDVAGLGKIRLELEEIVKFF-THGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (795)
Q Consensus 406 ~~~~~~~~~~~f~~~~gl~~~~~~l~~lv~~~-~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (795)
.......+.+.|+++.|++..+..+.+++... ..+..+.. +...+.|+||+||||||||+||+++|++++.+++.+++
T Consensus 6 ~~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~ 84 (322)
T 3eie_A 6 TAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSS 84 (322)
T ss_dssp CCSEEECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEH
T ss_pred cceeecCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEch
Confidence 34455667889999999999999999887643 33444443 55667889999999999999999999999999999999
Q ss_pred cceehhhhccchhhHHhHHHHHHhcCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhccc-CCCcEEEEecc
Q 003795 485 SQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE-GRGNVITIAST 563 (795)
Q Consensus 485 se~~~~~~g~~~~~l~~lf~~ar~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~-~~~~VlVIatT 563 (795)
+++...|+|.....++.+|..++...|+|+||||||.+...+.. +..+..+.+.+.++..++++. ...+++||++|
T Consensus 85 ~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~---~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~at 161 (322)
T 3eie_A 85 SDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGE---GESEASRRIKTELLVQMNGVGNDSQGVLVLGAT 161 (322)
T ss_dssp HHHHTTTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC---------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEE
T ss_pred HHHhhcccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCC---CcchHHHHHHHHHHHHhccccccCCceEEEEec
Confidence 99999999999999999999999999999999999999776532 223344567888999998874 56789999999
Q ss_pred CCCCCCCccccCCCcccceecCCCCCHHHHHHHHHHHHccCCCC-ChhhHHHHHhhCCCCcHHHHHHHHHHHHHHHHHc
Q 003795 564 NRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMRD 641 (795)
Q Consensus 564 N~~d~LdpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~~~~-~d~dl~~LA~~t~G~sgadL~~lv~~A~~~A~~~ 641 (795)
|.++.+|++++| ||+..+++++|+.++|.+|++.+++..... .+.++..++..+.||+++||.++|++|...+.++
T Consensus 162 n~~~~ld~al~~--Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l~~~a~~~a~r~ 238 (322)
T 3eie_A 162 NIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRK 238 (322)
T ss_dssp SCGGGSCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHHHHHHTTHHHHH
T ss_pred CChhhCCHHHHc--ccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999 999999999999999999999999887644 6778999999999999999999999998888765
No 21
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.96 E-value=4.7e-28 Score=277.48 Aligned_cols=241 Identities=41% Similarity=0.700 Sum_probs=217.8
Q ss_pred ccccccCccCchHHHHHHHHHHHh-ccccccccccCcccCCceEEECCCCCchhHHHHHhhhhccccEEEeeccceehhh
Q 003795 413 VDVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIY 491 (795)
Q Consensus 413 ~~~~f~~~~gl~~~~~~l~~lv~~-~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~se~~~~~ 491 (795)
....|+++.|+...+..+.+.+.. +..+..+..+|...+.++||+||||||||++|++|+..++.+++.++++++...+
T Consensus 199 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~ 278 (489)
T 3hu3_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 278 (489)
T ss_dssp TCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSC
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhh
Confidence 346788899999999999988875 5677888889999999999999999999999999999999999999999999999
Q ss_pred hccchhhHHhHHHHHHhcCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcccCCCcEEEEeccCCCCCCCc
Q 003795 492 VGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDP 571 (795)
Q Consensus 492 ~g~~~~~l~~lf~~ar~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVIatTN~~d~Ldp 571 (795)
+|.....++.+|+.+....|+++||||||.+.+.+. ...++....+++.|+..|++.....+++||+|||.++.+++
T Consensus 279 ~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~---~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld~ 355 (489)
T 3hu3_A 279 AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKRE---KTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDP 355 (489)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTT---SCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGBCG
T ss_pred cchhHHHHHHHHHHHHhcCCcEEEecchhhhccccc---cccchHHHHHHHHHHHHhhccccCCceEEEEecCCccccCH
Confidence 998888899999999999999999999999987653 23456667789999999998888889999999999999999
Q ss_pred cccCCCcccceecCCCCCHHHHHHHHHHHHccCCCCChhhHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCC-------
Q 003795 572 ALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRT------- 644 (795)
Q Consensus 572 aLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~~~~~d~dl~~LA~~t~G~sgadL~~lv~~A~~~A~~~~~~------- 644 (795)
+++++|||+..|+|+.|+.++|.+||+.+++...+..+.++..++..+.||+++||.++|++|...+.++...
T Consensus 356 al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l~~la~~t~g~s~~dL~~L~~~A~~~a~r~~~~~i~~~~~ 435 (489)
T 3hu3_A 356 ALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDE 435 (489)
T ss_dssp GGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTTTTCCTTCS
T ss_pred HHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhHHHHHHHccCCcHHHHHHHHHHHHHHHHHhcccccccccc
Confidence 9999999999999999999999999999999888888889999999999999999999999999999887543
Q ss_pred ----------ccCHHHHHHHHH
Q 003795 645 ----------EITTDDLLQAAQ 656 (795)
Q Consensus 645 ----------~It~edl~~Al~ 656 (795)
.|+++||..|+.
T Consensus 436 ~~~~~~~~~~~vt~edf~~Al~ 457 (489)
T 3hu3_A 436 TIDAEVMNSLAVTMDDFRWALS 457 (489)
T ss_dssp SCCHHHHHHCCBCHHHHHHHHT
T ss_pred ccchhhcccCcCCHHHHHHHHH
Confidence 378888888876
No 22
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.95 E-value=5.7e-28 Score=266.42 Aligned_cols=224 Identities=36% Similarity=0.616 Sum_probs=187.8
Q ss_pred CccccccCccCchHHHHHHHHHHHhc-cccccccccCcccCCceEEECCCCCchhHHHHHhhhhccccEEEeeccceehh
Q 003795 412 GVDVKFSDVAGLGKIRLELEEIVKFF-THGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEI 490 (795)
Q Consensus 412 ~~~~~f~~~~gl~~~~~~l~~lv~~~-~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~se~~~~ 490 (795)
.+...|+++.|++..+..+.+.+... ..+..+.. +...++|+||+||||||||+||++||.+++.+++.++++++...
T Consensus 45 ~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~~ 123 (355)
T 2qp9_X 45 KPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSK 123 (355)
T ss_dssp --CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCS-SCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHSC
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhc-CCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhhh
Confidence 45788999999999999998877643 44555554 55677889999999999999999999999999999999999888
Q ss_pred hhccchhhHHhHHHHHHhcCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcccC-CCcEEEEeccCCCCCC
Q 003795 491 YVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEG-RGNVITIASTNRPDIL 569 (795)
Q Consensus 491 ~~g~~~~~l~~lf~~ar~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~-~~~VlVIatTN~~d~L 569 (795)
|+|.....++.+|..++...|+||||||+|.+.+.+.. ......+.+.+.|+..|+++.. ..+++||++||.++.+
T Consensus 124 ~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~---~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~l 200 (355)
T 2qp9_X 124 WMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGE---GESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQL 200 (355)
T ss_dssp C---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC---------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGGGS
T ss_pred hcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCC---CcchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcccC
Confidence 99988888999999999999999999999999776532 2334456678899999988753 5689999999999999
Q ss_pred CccccCCCcccceecCCCCCHHHHHHHHHHHHccCCC-CChhhHHHHHhhCCCCcHHHHHHHHHHHHHHHHHc
Q 003795 570 DPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPM-ADDVDYLAVASMTDGMVGAELANIVEVAAINMMRD 641 (795)
Q Consensus 570 dpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~~~-~~d~dl~~LA~~t~G~sgadL~~lv~~A~~~A~~~ 641 (795)
|++++| ||+..+++++|+.++|..||+.++...+. ..+.++..|+..+.||+|+||.++|++|+..|.++
T Consensus 201 d~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~l~~~A~~~a~~~ 271 (355)
T 2qp9_X 201 DSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRK 271 (355)
T ss_dssp CHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999 99999999999999999999999987764 36788999999999999999999999999988875
No 23
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.95 E-value=4.4e-30 Score=270.54 Aligned_cols=245 Identities=51% Similarity=0.850 Sum_probs=209.6
Q ss_pred CccccccCccCchHHHHHHHHHHHhccccccccccCcccCCceEEECCCCCchhHHHHHhhhhccccEEEeeccceehhh
Q 003795 412 GVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIY 491 (795)
Q Consensus 412 ~~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~se~~~~~ 491 (795)
.+...|+++.|.+..+..+.+++..+..+..+..++...+.|++|+||||||||+||++||+.++.+++.++++.+...+
T Consensus 5 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~ 84 (268)
T 2r62_A 5 KPNVRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMF 84 (268)
T ss_dssp CCCCCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTSC
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHhh
Confidence 45678999999999999999999888888888889999999999999999999999999999999999999999988888
Q ss_pred hccchhhHHhHHHHHHhcCCceeEhHHHHHHhhhccCCC-CCCcchHHHHHHHHHHhhhcccC-CCcEEEEeccCCCCCC
Q 003795 492 VGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIK-GSGGQERDATLNQLLVCLDGFEG-RGNVITIASTNRPDIL 569 (795)
Q Consensus 492 ~g~~~~~l~~lf~~ar~~~p~Il~IDEID~l~~~r~~~~-~Sgge~~r~~l~~LL~~ld~~~~-~~~VlVIatTN~~d~L 569 (795)
.|.....++.+|+.+....|+++||||+|.+...+.... .++.......++.|+..+++... ..+++||+|||.++.+
T Consensus 85 ~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~l 164 (268)
T 2r62_A 85 VGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEIL 164 (268)
T ss_dssp SSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCCTTS
T ss_pred cchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCchhc
Confidence 888777778899999988999999999999976542111 11222223356778888886543 3458999999999999
Q ss_pred CccccCCCcccceecCCCCCHHHHHHHHHHHHccCCCCChhhHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCccCHH
Q 003795 570 DPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTD 649 (795)
Q Consensus 570 dpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~~~~~d~dl~~LA~~t~G~sgadL~~lv~~A~~~A~~~~~~~It~e 649 (795)
|++++++|||+..++|++|+.++|.+|++.+++...+..+.++..++..+.|++|+||.++++.|...|...+...|+.+
T Consensus 165 d~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~g~dl~~l~~~a~~~a~~~~~~~i~~~ 244 (268)
T 2r62_A 165 DPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAGRNNQKEVRQQ 244 (268)
T ss_dssp CGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSCCTTTTTSSSCSSCHHHHHHHHHHHHHTTSSSCCCSCCHH
T ss_pred CHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHH
Confidence 99999999999999999999999999999999888777778888899999999999999999999998887777889999
Q ss_pred HHHHHHH
Q 003795 650 DLLQAAQ 656 (795)
Q Consensus 650 dl~~Al~ 656 (795)
|+..|+.
T Consensus 245 ~~~~a~~ 251 (268)
T 2r62_A 245 HLKEAVE 251 (268)
T ss_dssp HHHTSCT
T ss_pred HHHHHHH
Confidence 9998865
No 24
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.95 E-value=1.6e-27 Score=270.50 Aligned_cols=226 Identities=35% Similarity=0.570 Sum_probs=185.9
Q ss_pred ccCccccccCccCchHHHHHHHHHHHh-ccccccccccCcccCCceEEECCCCCchhHHHHHhhhhc-cccEEEeeccce
Q 003795 410 ERGVDVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEA-GVNFFSISASQF 487 (795)
Q Consensus 410 ~~~~~~~f~~~~gl~~~~~~l~~lv~~-~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el-~~~~~~is~se~ 487 (795)
...+.+.|+++.|++..+..+.+++.. +..+..+.. +...++|+||+||||||||+||++||.++ +.+++.++++++
T Consensus 126 ~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l 204 (444)
T 2zan_A 126 IERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDL 204 (444)
T ss_dssp CCCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSG-GGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC--
T ss_pred ccCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhc-cCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHH
Confidence 345678899999999999999887754 333444432 34566889999999999999999999999 889999999999
Q ss_pred ehhhhccchhhHHhHHHHHHhcCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhccc-CCCcEEEEeccCCC
Q 003795 488 VEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE-GRGNVITIASTNRP 566 (795)
Q Consensus 488 ~~~~~g~~~~~l~~lf~~ar~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~-~~~~VlVIatTN~~ 566 (795)
...|+|.....++.+|..++...|+||||||||.+.+.+.. ......+.+++.|+..++++. ...+++||++||.+
T Consensus 205 ~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~---~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~ 281 (444)
T 2zan_A 205 VSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSE---NESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIP 281 (444)
T ss_dssp -------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSC---CCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCG
T ss_pred HhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCC---ccccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCc
Confidence 99999998888999999999999999999999999766532 233445678899999999875 36789999999999
Q ss_pred CCCCccccCCCcccceecCCCCCHHHHHHHHHHHHccCCC-CChhhHHHHHhhCCCCcHHHHHHHHHHHHHHHHHc
Q 003795 567 DILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPM-ADDVDYLAVASMTDGMVGAELANIVEVAAINMMRD 641 (795)
Q Consensus 567 d~LdpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~~~-~~d~dl~~LA~~t~G~sgadL~~lv~~A~~~A~~~ 641 (795)
+.+|++++| ||+..+++++|+.++|..|++.++...+. ..+.++..|+..+.||+|+||.++|++|+..|.++
T Consensus 282 ~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~a~~~a~r~ 355 (444)
T 2zan_A 282 WVLDSAIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQPVRK 355 (444)
T ss_dssp GGSCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHH
T ss_pred cccCHHHHh--hcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999 99999999999999999999999987654 36788999999999999999999999999888764
No 25
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.94 E-value=5e-28 Score=292.83 Aligned_cols=232 Identities=41% Similarity=0.743 Sum_probs=198.9
Q ss_pred cCccccccCccCchHHHHHHHHHHHh-ccccccccccCcccCCceEEECCCCCchhHHHHHhhhhccccEEEeeccceeh
Q 003795 411 RGVDVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVE 489 (795)
Q Consensus 411 ~~~~~~f~~~~gl~~~~~~l~~lv~~-~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~se~~~ 489 (795)
....+.|+++.|+...+..+.+++.+ ...+..+..+++..+.+++|+||||||||+|+++||+.++.+++.++++++..
T Consensus 470 ~~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~ 549 (806)
T 1ypw_A 470 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT 549 (806)
T ss_dssp CCCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTT
T ss_pred cCccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhhh
Confidence 34678899999999999888887764 34456667778888888999999999999999999999999999999999999
Q ss_pred hhhccchhhHHhHHHHHHhcCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcccCCCcEEEEeccCCCCCC
Q 003795 490 IYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDIL 569 (795)
Q Consensus 490 ~~~g~~~~~l~~lf~~ar~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVIatTN~~d~L 569 (795)
.|+|.....++.+|+.++...|||+||||||.+...++...+..+.....+++.|+..|+++....+++||+|||+++.|
T Consensus 550 ~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~vI~tTN~~~~l 629 (806)
T 1ypw_A 550 MWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDII 629 (806)
T ss_dssp CCTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC------CCBCCCCCBSCGGG
T ss_pred hhcCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcccccCCeEEEEecCCcccC
Confidence 99999999999999999999999999999999987765432223345677899999999998888899999999999999
Q ss_pred CccccCCCcccceecCCCCCHHHHHHHHHHHHccCCCCChhhHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcC
Q 003795 570 DPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDG 642 (795)
Q Consensus 570 dpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~~~~~d~dl~~LA~~t~G~sgadL~~lv~~A~~~A~~~~ 642 (795)
|++++|||||+..|+|+.|+.++|..||+.++++.++..++++..++..+.|||++||.++|++|...|.++.
T Consensus 630 d~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~l~~la~~t~g~sgadi~~l~~~a~~~a~~~~ 702 (806)
T 1ypw_A 630 DPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRES 702 (806)
T ss_dssp SCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC----CCCCSCSCGGGSSSCCHHHHHHHHHHHHHHHSCC
T ss_pred CHHHhCccccCceeecCCCCHHHHHHHHHHHhccCCCCcccCHHHHHHhccccCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998888888899999999999999999999999999998764
No 26
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.93 E-value=5e-25 Score=242.98 Aligned_cols=244 Identities=30% Similarity=0.519 Sum_probs=201.5
Q ss_pred cCccccccCccCchHHHHHHHHHHHh-ccccccccccCcccCCceEEECCCCCchhHHHHHhhhhccccEEEeeccceeh
Q 003795 411 RGVDVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVE 489 (795)
Q Consensus 411 ~~~~~~f~~~~gl~~~~~~l~~lv~~-~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~se~~~ 489 (795)
......|+++.|++..+..+.+++.. +..+..+...+ ..+.++||+||||||||+||++||..++.+++.++++++..
T Consensus 77 ~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~ 155 (357)
T 3d8b_A 77 HGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTS 155 (357)
T ss_dssp CSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCC
T ss_pred CCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhcc-CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhc
Confidence 34578899999999999999888764 33444444443 56778999999999999999999999999999999999998
Q ss_pred hhhccchhhHHhHHHHHHhcCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhccc--CCCcEEEEeccCCCC
Q 003795 490 IYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE--GRGNVITIASTNRPD 567 (795)
Q Consensus 490 ~~~g~~~~~l~~lf~~ar~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~--~~~~VlVIatTN~~d 567 (795)
.+.|.....++.+|..+....|++|||||||.+...+.. +........++.++..+++.. ...+++||++||.++
T Consensus 156 ~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~---~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~ 232 (357)
T 3d8b_A 156 KWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGD---GEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQ 232 (357)
T ss_dssp SSTTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC---------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGG
T ss_pred cccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCC---CcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChh
Confidence 888888888899999999889999999999999765431 234455667888999998764 346799999999999
Q ss_pred CCCccccCCCcccceecCCCCCHHHHHHHHHHHHccCCC-CChhhHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcC----
Q 003795 568 ILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPM-ADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDG---- 642 (795)
Q Consensus 568 ~LdpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~~~-~~d~dl~~LA~~t~G~sgadL~~lv~~A~~~A~~~~---- 642 (795)
.+++++++ ||+..++++.|+.++|.+|++.++..... ..+.++..++..+.||+++||..+|+.|...+.++-
T Consensus 233 ~l~~~l~~--Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~~a~~~~ir~l~~~~ 310 (357)
T 3d8b_A 233 EIDEAARR--RLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQTAD 310 (357)
T ss_dssp GBCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHCCC--
T ss_pred hCCHHHHh--hCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhhhhh
Confidence 99999999 99999999999999999999998876543 245678999999999999999999999988887742
Q ss_pred --------CCccCHHHHHHHHHHHHh
Q 003795 643 --------RTEITTDDLLQAAQIEER 660 (795)
Q Consensus 643 --------~~~It~edl~~Al~~~~~ 660 (795)
...|+.+||..|+.....
T Consensus 311 ~~~~~~~~~~~i~~~d~~~al~~~~p 336 (357)
T 3d8b_A 311 IATITPDQVRPIAYIDFENAFRTVRP 336 (357)
T ss_dssp --------CCCBCHHHHHHHHHHHGG
T ss_pred hccccccccCCcCHHHHHHHHHhcCC
Confidence 356999999999876543
No 27
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.93 E-value=1.8e-25 Score=238.84 Aligned_cols=241 Identities=34% Similarity=0.551 Sum_probs=196.8
Q ss_pred ccCccccccCccCchHHHHHHHHHHHh-ccccccccccCcccCCceEEECCCCCchhHHHHHhhhhccccEEEeecccee
Q 003795 410 ERGVDVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFV 488 (795)
Q Consensus 410 ~~~~~~~f~~~~gl~~~~~~l~~lv~~-~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~se~~ 488 (795)
...+...|+++.|.+..+..+.+.+.. ...+..+..++ ..+.+++|+||||||||++|+++|+.++.+++.++++++.
T Consensus 13 ~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~ 91 (297)
T 3b9p_A 13 EGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLT 91 (297)
T ss_dssp CCSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGG-CCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTS
T ss_pred cCCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHh
Confidence 345678899999999999988887654 23444444433 3457899999999999999999999999999999999988
Q ss_pred hhhhccchhhHHhHHHHHHhcCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcccCC---CcEEEEeccCC
Q 003795 489 EIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGR---GNVITIASTNR 565 (795)
Q Consensus 489 ~~~~g~~~~~l~~lf~~ar~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~---~~VlVIatTN~ 565 (795)
..+.|.....++.+|..+....|+++||||+|.+...+.. ...+......+.|+..+++.... .+++||++||.
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~---~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~ 168 (297)
T 3b9p_A 92 SKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSS---SEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNR 168 (297)
T ss_dssp SSSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC--------CCSHHHHHHHHHHHHHCC------CEEEEEEESC
T ss_pred hcccchHHHHHHHHHHHHHHcCCcEEEeccHHHhcccccc---CcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCC
Confidence 8888888888889999999999999999999999765432 11223345677888888876543 57999999999
Q ss_pred CCCCCccccCCCcccceecCCCCCHHHHHHHHHHHHccCCC-CChhhHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcC--
Q 003795 566 PDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPM-ADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDG-- 642 (795)
Q Consensus 566 ~d~LdpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~~~-~~d~dl~~LA~~t~G~sgadL~~lv~~A~~~A~~~~-- 642 (795)
++.+++++++ ||+..+++++|+.++|..|++.++..... .++.++..++..+.|+++++|.++++.|...+.++.
T Consensus 169 ~~~l~~~l~~--R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~l~~~a~~~a~r~~~~ 246 (297)
T 3b9p_A 169 PQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIRELNV 246 (297)
T ss_dssp GGGBCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTCC-
T ss_pred hhhCCHHHHh--hCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999 99999999999999999999998876543 345678899999999999999999999998888764
Q ss_pred ----------CCccCHHHHHHHHH
Q 003795 643 ----------RTEITTDDLLQAAQ 656 (795)
Q Consensus 643 ----------~~~It~edl~~Al~ 656 (795)
...|+.+||..|+.
T Consensus 247 ~~~~~~~~~~~~~i~~~d~~~a~~ 270 (297)
T 3b9p_A 247 EQVKCLDISAMRAITEQDFHSSLK 270 (297)
T ss_dssp -------CCCCCCCCHHHHHHHTT
T ss_pred hhcccccccccCCcCHHHHHHHHH
Confidence 24699999999865
No 28
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.92 E-value=1.5e-24 Score=241.69 Aligned_cols=243 Identities=33% Similarity=0.547 Sum_probs=192.0
Q ss_pred cccCccccccCccCchHHHHHHHHHHHhc-cccccccccCcccCCceEEECCCCCchhHHHHHhhhhccccEEEeeccce
Q 003795 409 LERGVDVKFSDVAGLGKIRLELEEIVKFF-THGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQF 487 (795)
Q Consensus 409 ~~~~~~~~f~~~~gl~~~~~~l~~lv~~~-~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~se~ 487 (795)
........|+++.|...++..+.+++... ..+..+...+ ..+.++||+||||||||+||++||..++.+++.++++++
T Consensus 106 ~~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l 184 (389)
T 3vfd_A 106 VDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLR-APARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASL 184 (389)
T ss_dssp BCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-CCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC
T ss_pred hccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccC-CCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHh
Confidence 34456788999999999998888877543 2344444444 345789999999999999999999999999999999999
Q ss_pred ehhhhccchhhHHhHHHHHHhcCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcccC--CCcEEEEeccCC
Q 003795 488 VEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEG--RGNVITIASTNR 565 (795)
Q Consensus 488 ~~~~~g~~~~~l~~lf~~ar~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~--~~~VlVIatTN~ 565 (795)
...|.|.....+..+|..++...|+||||||||.+...+.. .........++.|+..+++... ..+++||++||.
T Consensus 185 ~~~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~---~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~ 261 (389)
T 3vfd_A 185 TSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERRE---GEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNR 261 (389)
T ss_dssp -------CHHHHHHHHHHHHHSSSEEEEEETGGGGC-----------CTHHHHHHHHHHHHHHHC-----CEEEEEEESC
T ss_pred hccccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCC---ccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCC
Confidence 99999998888999999999999999999999999765432 2233455678888888887654 467999999999
Q ss_pred CCCCCccccCCCcccceecCCCCCHHHHHHHHHHHHccCCC-CChhhHHHHHhhCCCCcHHHHHHHHHHHHHHHHHc---
Q 003795 566 PDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPM-ADDVDYLAVASMTDGMVGAELANIVEVAAINMMRD--- 641 (795)
Q Consensus 566 ~d~LdpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~~~-~~d~dl~~LA~~t~G~sgadL~~lv~~A~~~A~~~--- 641 (795)
++.+++++++ ||+..++|+.|+.++|..|++.++..... ..+.++..++..+.|+++++|..+++.|...+.++
T Consensus 262 ~~~l~~~l~~--R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~~~a~~~~~rel~~ 339 (389)
T 3vfd_A 262 PQELDEAVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRELKP 339 (389)
T ss_dssp GGGCCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTSCC
T ss_pred chhcCHHHHc--CcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhh
Confidence 9999999999 99999999999999999999998876543 34567889999999999999999999999888876
Q ss_pred ---------CCCccCHHHHHHHHHH
Q 003795 642 ---------GRTEITTDDLLQAAQI 657 (795)
Q Consensus 642 ---------~~~~It~edl~~Al~~ 657 (795)
....|+.+||..++..
T Consensus 340 ~~~~~~~~~~~~~i~~~d~~~al~~ 364 (389)
T 3vfd_A 340 EQVKNMSASEMRNIRLSDFTESLKK 364 (389)
T ss_dssp C---CCSSSCCCCCCHHHHHHHHHH
T ss_pred hhhhccchhhcCCcCHHHHHHHHHH
Confidence 3356999999999864
No 29
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.92 E-value=5.8e-26 Score=277.00 Aligned_cols=387 Identities=18% Similarity=0.226 Sum_probs=282.6
Q ss_pred cccccccccCcccccccCCCchhhHHHHHHHHHHHHHHHhH-HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003795 208 PYLGFLWRVPASMLSTFRPKKESKRAAEIRRAREELKRQRK-EELEKMREESEMMEKAMDMQKKEEERRRKKEIRLQKYE 286 (795)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~k-~eld~~~~~~~~le~e~~~l~~e~~~~~~~~~rl~~l~ 286 (795)
..+..+..++.+|+..+..++++.+++|.++++..+....+ .+++++.+++.+++.+..++.+|.+....+ |+.+++
T Consensus 359 ~al~~~~~ls~r~i~~~~lp~kai~lldea~a~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 436 (854)
T 1qvr_A 359 SAIIAAATLSHRYITERRLPDKAIDLIDEAAARLRMALESAPEEIDALERKKLQLEIEREALKKEKDPDSQE--RLKAIE 436 (854)
T ss_dssp HHHHHHHHHHHHHCCSSCTHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHSSCSSHHHHS--CTHHHH
T ss_pred HHHHHHHHHHhhhcccccChHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhccccccHH--HHHHHH
Confidence 44556667778889999999999999999999999876544 458888888888888888888777665555 999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhccccceeeeechhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 003795 287 ESLQDARDNYRYMANVWENLAKDSTVATGLGIVFFVIFYRTVVLNYRRQKKDYEDRLKIEKAEREERKKLRQLERELEGL 366 (795)
Q Consensus 287 ~el~~l~~~~~~l~~~w~~ek~~~~~i~~l~~~~~l~~Ykgny~~y~~~~e~~e~~~~~ek~~e~~~~ei~~Lekele~~ 366 (795)
++++.+++++..+..+|+.|+..+..+..+ +...+......+.+++..+.+++.+..+..++.+++++...
T Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (854)
T 1qvr_A 437 AEIAKLTEEIAKLRAEWEREREILRKLREA---------QHRLDEVRREIELAERQYDLNRAAELRYGELPKLEAEVEAL 507 (854)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHTTTTCHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHhhhHHHHHhcccHHHHHHHhhhhhHHHHHHHHHH
Confidence 999999999999999999999999999988 78777777777766666667777777778888888887755
Q ss_pred hccchhhhhhhhhcCchHHHhhchhhhHHHHHHHhcCCCCcccccCcc-------ccccCccCchHHHHHHHHHHHhccc
Q 003795 367 EGADDEIEQGEAEQNPHLKMAMQFMKSGARVRRAYGKGLPQYLERGVD-------VKFSDVAGLGKIRLELEEIVKFFTH 439 (795)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~k~~v~~~~~~~~vsr~tgipv~~~~~~~~~-------~~f~~~~gl~~~~~~l~~lv~~~~~ 439 (795)
+.. ........+.++.......+++|+++|+......+.. ..+..+.|....+..+...+....
T Consensus 508 ~~~--------~~~~~~~~~~v~~~~l~~~v~~~~~ip~~~~~~~~~~~l~~l~~~l~~~viG~~~a~~~l~~~i~~~~- 578 (854)
T 1qvr_A 508 SEK--------LRGARFVRLEVTEEDIAEIVSRWTGIPVSKLLEGEREKLLRLEEELHKRVVGQDEAIRAVADAIRRAR- 578 (854)
T ss_dssp HHH--------SSSCSSCCSEECHHHHHHHHHTTSSCHHHHTTCCHHHHHHSHHHHHHHHSCSCHHHHHHHHHHHHHHG-
T ss_pred Hhh--------hcccccccCCcCHHHHHHHHHHHhCCChHhhcHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHh-
Confidence 421 0111123344677788899999999887655433222 123456777777777766665432
Q ss_pred cccccccCccc---C-CceEEECCCCCchhHHHHHhhhhc---cccEEEeeccceehh------------hhccchhhHH
Q 003795 440 GEMYRRRGVRI---P-GGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEI------------YVGVGASRVR 500 (795)
Q Consensus 440 ~~~~~~~gl~i---~-~giLL~GPpGtGKTtLakaLA~el---~~~~~~is~se~~~~------------~~g~~~~~l~ 500 (795)
.|+.. | .+++|+||||||||++|++|+..+ +.+++.++++++... |+|... ..
T Consensus 579 ------~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~s~l~g~~~~~~G~~~--~g 650 (854)
T 1qvr_A 579 ------AGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEE--GG 650 (854)
T ss_dssp ------GGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGGGGC----------------
T ss_pred ------cccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHHHHHcCCCCCCcCccc--cc
Confidence 22222 2 359999999999999999999988 789999999987654 223222 13
Q ss_pred hHHHHHHhcCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhccc---------CCCcEEEEeccCCC-----
Q 003795 501 SLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE---------GRGNVITIASTNRP----- 566 (795)
Q Consensus 501 ~lf~~ar~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~---------~~~~VlVIatTN~~----- 566 (795)
.+...++..+++++|||||+.+... +++.|++.++... +..+++||+|||..
T Consensus 651 ~l~~~~~~~~~~vl~lDEi~~l~~~--------------~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~tsn~~~~~~~ 716 (854)
T 1qvr_A 651 QLTEAVRRRPYSVILFDEIEKAHPD--------------VFNILLQILDDGRLTDSHGRTVDFRNTVIILTSNLGSPLIL 716 (854)
T ss_dssp CHHHHHHHCSSEEEEESSGGGSCHH--------------HHHHHHHHHTTTEECCSSSCCEECTTEEEEEECCTTHHHHH
T ss_pred hHHHHHHhCCCeEEEEecccccCHH--------------HHHHHHHHhccCceECCCCCEeccCCeEEEEecCcChHHHh
Confidence 4566666777899999999987654 8888988888431 23578999999972
Q ss_pred ---------------------CCCCccccCCCcccceecCCCCCHHHHHHHHHHHHccC-------CC---CChhhHHHH
Q 003795 567 ---------------------DILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKK-------PM---ADDVDYLAV 615 (795)
Q Consensus 567 ---------------------d~LdpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~-------~~---~~d~dl~~L 615 (795)
..+.|+|++ ||+.++.|.+|+.+++..|++.++... .. .++..+..|
T Consensus 717 ~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~--Rl~~~i~~~pl~~edi~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~L 794 (854)
T 1qvr_A 717 EGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAEKRISLELTEAAKDFL 794 (854)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHTTSCHHHHH--TCSBCCBCCCCCHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHH
T ss_pred hhcccccchHHHHHHHHHHHHhhCCHHHHH--hcCeEEeCCCCCHHHHHHHHHHHHHHHHHHHHhCCceEEECHHHHHHH
Confidence 346788887 999999999999999999998877531 11 122335556
Q ss_pred HhhCC--CCcHHHHHHHHHHHHHHH
Q 003795 616 ASMTD--GMVGAELANIVEVAAINM 638 (795)
Q Consensus 616 A~~t~--G~sgadL~~lv~~A~~~A 638 (795)
+.... .+..++|.++++.+...+
T Consensus 795 ~~~~~~~~gn~R~L~~~i~~~~~~~ 819 (854)
T 1qvr_A 795 AERGYDPVFGARPLRRVIQRELETP 819 (854)
T ss_dssp HHHHCBTTTBTSTHHHHHHHHTHHH
T ss_pred HHcCCCCCCChHHHHHHHHHHHHHH
Confidence 66544 567788888888766543
No 30
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.91 E-value=6.3e-26 Score=243.61 Aligned_cols=178 Identities=22% Similarity=0.271 Sum_probs=137.7
Q ss_pred ccCcccCCceEEECCCCCchhHHHHHhhhhccccEEEeeccceehhhhccchhhHHhHHHHH----HhcCCceeEhHHHH
Q 003795 445 RRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEA----KDNAPSVVFIDELD 520 (795)
Q Consensus 445 ~~gl~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~se~~~~~~g~~~~~l~~lf~~a----r~~~p~Il~IDEID 520 (795)
..+.+.|.|+||+||||||||+||++||+.++.+++.++++++...|+|.....++.+|..+ +...|+|+||||||
T Consensus 30 ~~~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD 109 (293)
T 3t15_A 30 LPNIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLD 109 (293)
T ss_dssp CTTCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC
T ss_pred cCCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechh
Confidence 34677889999999999999999999999999999999999999999999888888999888 56789999999999
Q ss_pred HHhhhccCCCCCCcchHHHHHHHHHHhhhccc-----------CCCcEEEEeccCCCCCCCccccCCCcccceecCCCCC
Q 003795 521 AVGRERGLIKGSGGQERDATLNQLLVCLDGFE-----------GRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPG 589 (795)
Q Consensus 521 ~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~-----------~~~~VlVIatTN~~d~LdpaLlrpgRFd~~I~~~~Pd 589 (795)
.+++.+... ..+....+.+++.|+..+|+.. ...+++||+|||.++.+|++++|+|||+..|++ |+
T Consensus 110 ~~~~~~~~~-~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~~--P~ 186 (293)
T 3t15_A 110 AGAGRMGGT-TQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PT 186 (293)
T ss_dssp ---------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEEC--CC
T ss_pred hhcCCCCCC-ccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEeC--cC
Confidence 998754321 1222234456788888887432 556899999999999999999999999998874 69
Q ss_pred HHHHHHHHHHHHccCCCCChhhHHHHHhhCCCCcHHHHHH
Q 003795 590 LIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELAN 629 (795)
Q Consensus 590 ~~eR~~Il~~~l~~~~~~~d~dl~~LA~~t~G~sgadL~~ 629 (795)
.++|.+|++.++... +++...++..+.||++++|..
T Consensus 187 ~~~r~~Il~~~~~~~----~~~~~~l~~~~~~~~~~~l~~ 222 (293)
T 3t15_A 187 REDRIGVCTGIFRTD----NVPAEDVVKIVDNFPGQSIDF 222 (293)
T ss_dssp HHHHHHHHHHHHGGG----CCCHHHHHHHHHHSCSCCHHH
T ss_pred HHHHHHHHHHhccCC----CCCHHHHHHHhCCCCcccHHH
Confidence 999999999888643 456788999999999998854
No 31
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.90 E-value=3.6e-23 Score=250.39 Aligned_cols=242 Identities=42% Similarity=0.690 Sum_probs=215.3
Q ss_pred CccccccCccCchHHHHHHHHHHHh-ccccccccccCcccCCceEEECCCCCchhHHHHHhhhhccccEEEeeccceehh
Q 003795 412 GVDVKFSDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEI 490 (795)
Q Consensus 412 ~~~~~f~~~~gl~~~~~~l~~lv~~-~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~se~~~~ 490 (795)
...+.|+++.|++..+..+.+.+.. +.++..+..+++..+.+++|+||||||||||+++||+.++.+++.+++.++...
T Consensus 198 ~~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~~ 277 (806)
T 1ypw_A 198 LNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 277 (806)
T ss_dssp SSSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSSS
T ss_pred cCCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhhh
Confidence 3568899999999999999998876 678889999999999999999999999999999999999999999999999888
Q ss_pred hhccchhhHHhHHHHHHhcCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcccCCCcEEEEeccCCCCCCC
Q 003795 491 YVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILD 570 (795)
Q Consensus 491 ~~g~~~~~l~~lf~~ar~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVIatTN~~d~Ld 570 (795)
+.+.....++.+|+.+....|+++||||++.+...+.. ..++..+.++..|+..+++.....++++|++||+++.+|
T Consensus 278 ~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~---~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~ld 354 (806)
T 1ypw_A 278 LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREK---THGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSID 354 (806)
T ss_dssp STTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSC---CCSHHHHHHHHHHHHHHHSSCTTSCCEEEEECSCTTTSC
T ss_pred hhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhcccc---ccchHHHHHHHHHHHHhhhhcccccEEEecccCCchhcC
Confidence 88888888999999999999999999999999876532 345556678889999999988888999999999999999
Q ss_pred ccccCCCcccceecCCCCCHHHHHHHHHHHHccCCCCChhhHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCC------
Q 003795 571 PALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRT------ 644 (795)
Q Consensus 571 paLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~~~~~d~dl~~LA~~t~G~sgadL~~lv~~A~~~A~~~~~~------ 644 (795)
+++.++|||++.+.++.|+.++|.+|++.++....+..+.++..++..+.|++++++..++++|...+.++...
T Consensus 355 ~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~g~dl~~l~~ea~~~a~r~~~~~i~~~~ 434 (806)
T 1ypw_A 355 PALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLED 434 (806)
T ss_dssp TTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTCCTHHHHHSCSSCCHHHHHHHHHHHHHHHHHHTTTTTSCHH
T ss_pred HHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCcccchhHHHHHhhcCcchHHHHHHHHHHHHHHHhhhccccchhh
Confidence 99999999999999999999999999999999888888889999999999999999999999999887765432
Q ss_pred -----------ccCHHHHHHHHH
Q 003795 645 -----------EITTDDLLQAAQ 656 (795)
Q Consensus 645 -----------~It~edl~~Al~ 656 (795)
.++.+|+..++.
T Consensus 435 ~~~~~~~~~~~~v~~~d~~~al~ 457 (806)
T 1ypw_A 435 ETIDAEVMNSLAVTMDDFRWALS 457 (806)
T ss_dssp HHCCHHHHTTCCCCTTHHHHHHH
T ss_pred hccchhhhhhhhhhhhhhhcccc
Confidence 355666766665
No 32
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.84 E-value=2.7e-21 Score=233.10 Aligned_cols=326 Identities=17% Similarity=0.207 Sum_probs=207.4
Q ss_pred CCCcccccccccCcccccccCCCchhhHHHHHHHHHHHHHHHhHH-HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003795 205 VPNPYLGFLWRVPASMLSTFRPKKESKRAAEIRRAREELKRQRKE-ELEKMREESEMMEKAMDMQKKEEERRRKKEIRLQ 283 (795)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~k~-eld~~~~~~~~le~e~~~l~~e~~~~~~~~~rl~ 283 (795)
++...+..+..++.+|++....++++.+++|.++++..+.....+ +++.+.+++.+++.+...+..+. ..++..
T Consensus 349 i~~~al~~~~~~s~~~i~~~~~p~~ai~ll~~a~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~-----~~~~~~ 423 (758)
T 3pxi_A 349 ITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGSKVRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQ-----EFEKAA 423 (758)
T ss_dssp CCHHHHHHHHHHHHHSSCCSCTTHHHHHHHHHHHHHHHHHTTC--CCTHHHHHHHHHHHHHHHHHHHHC-----CSHHHH
T ss_pred CCHHHHHHHHHHhhcccccCcCCcHHHHHHHHHHHHHHhhccCCCcchhhHHHHHHHHHHHHHHHHhCc-----CHHHHH
Confidence 444556677778888999999999999999999999987765432 24444444444444433222211 112555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccceeeeechhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003795 284 KYEESLQDARDNYRYMANVWENLAKDSTVATGLGIVFFVIFYRTVVLNYRRQKKDYEDRLKIEKAEREERKKLRQLEREL 363 (795)
Q Consensus 284 ~l~~el~~l~~~~~~l~~~w~~ek~~~~~i~~l~~~~~l~~Ykgny~~y~~~~e~~e~~~~~ek~~e~~~~ei~~Lekel 363 (795)
+++.++.++++++..+...|..++.
T Consensus 424 ~l~~~~~~~~~~l~~~~~~~~~~~~------------------------------------------------------- 448 (758)
T 3pxi_A 424 SLRDTEQRLREQVEDTKKSWKEKQG------------------------------------------------------- 448 (758)
T ss_dssp HHHHHHHHHHHHHHHHHSGGGHHHH-------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc-------------------------------------------------------
Confidence 5555555555555555444443221
Q ss_pred hhhhccchhhhhhhhhcCchHHHhhchhhhHHHHHHHhcCCCCcccccCcc-------ccccCccCchHHHHHHHHHHHh
Q 003795 364 EGLEGADDEIEQGEAEQNPHLKMAMQFMKSGARVRRAYGKGLPQYLERGVD-------VKFSDVAGLGKIRLELEEIVKF 436 (795)
Q Consensus 364 e~~~~~~~~~~~~~~~~~~~~k~~v~~~~~~~~vsr~tgipv~~~~~~~~~-------~~f~~~~gl~~~~~~l~~lv~~ 436 (795)
.....++...+...+++|+++|+......+.. .....+.|....+..+...+..
T Consensus 449 -------------------~~~~~v~~~~i~~~v~~~~~ip~~~~~~~~~~~l~~l~~~l~~~viGq~~a~~~l~~~i~~ 509 (758)
T 3pxi_A 449 -------------------QENSEVTVDDIAMVVSSWTGVPVSKIAQTETDKLLNMENILHSRVIGQDEAVVAVAKAVRR 509 (758)
T ss_dssp -------------------CC---CCTHHHHHHHHTTC-------CHHHHSCC-CHHHHHHTTSCSCHHHHHHHHHHHHH
T ss_pred -------------------ccCcccCHHHHHHHHHHHhCCChHHhhHHHHHHHHHHHHHHhCcCcChHHHHHHHHHHHHH
Confidence 01122445566777778888776654433221 1224567778777777766654
Q ss_pred ccccccccccCcc---cCC-ceEEECCCCCchhHHHHHhhhhc---cccEEEeeccceehhhhccchhhHHhHHHHHHhc
Q 003795 437 FTHGEMYRRRGVR---IPG-GILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEIYVGVGASRVRSLYQEAKDN 509 (795)
Q Consensus 437 ~~~~~~~~~~gl~---i~~-giLL~GPpGtGKTtLakaLA~el---~~~~~~is~se~~~~~~g~~~~~l~~lf~~ar~~ 509 (795)
.. .+.. .|. +++|+||||||||++|++||..+ +.++++++++++.+.+... ...++..++..
T Consensus 510 ~~-------~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~~----~~~l~~~~~~~ 578 (758)
T 3pxi_A 510 AR-------AGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTS----GGQLTEKVRRK 578 (758)
T ss_dssp HT-------TTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCCC-------CHHHHHHC
T ss_pred HH-------cccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccccccc----cchhhHHHHhC
Confidence 32 2222 222 49999999999999999999987 6789999999988776544 12345566677
Q ss_pred CCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhccc---------CCCcEEEEeccCCCCC------------
Q 003795 510 APSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE---------GRGNVITIASTNRPDI------------ 568 (795)
Q Consensus 510 ~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~---------~~~~VlVIatTN~~d~------------ 568 (795)
+++++|||||+.+... +++.|+..|+... ...+++||+|||.+..
T Consensus 579 ~~~vl~lDEi~~~~~~--------------~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~ 644 (758)
T 3pxi_A 579 PYSVVLLDAIEKAHPD--------------VFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDKVMGELKRA 644 (758)
T ss_dssp SSSEEEEECGGGSCHH--------------HHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTCCHHHHHHHHHH
T ss_pred CCeEEEEeCccccCHH--------------HHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhhHHHHHHHHHhh
Confidence 7899999999988654 7888888887522 3457899999997543
Q ss_pred CCccccCCCcccceecCCCCCHHHHHHHHHHHHccC-------CC---CChhhHHHHHh--hCCCCcHHHHHHHHHHHHH
Q 003795 569 LDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKK-------PM---ADDVDYLAVAS--MTDGMVGAELANIVEVAAI 636 (795)
Q Consensus 569 LdpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~-------~~---~~d~dl~~LA~--~t~G~sgadL~~lv~~A~~ 636 (795)
++|+|++ ||+.+|.|++|+.+++..|++.++... .. .++..+..|+. ....+..++|.++++.+..
T Consensus 645 f~p~l~~--Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~i~~~v~ 722 (758)
T 3pxi_A 645 FRPEFIN--RIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGVDLEYGARPLRRAIQKHVE 722 (758)
T ss_dssp SCHHHHT--TSSEEEECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHGGGCCTTTTTTTHHHHHHHHTH
T ss_pred CCHHHHh--hCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEECHHHHHHHHHhCCCCCCCChHHHHHHHHHHH
Confidence 7889988 999999999999999999998876542 11 12223455554 3344566778877776543
No 33
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.78 E-value=3e-21 Score=219.58 Aligned_cols=204 Identities=19% Similarity=0.216 Sum_probs=140.8
Q ss_pred ccccccCccCchHHHHHHHHHHHhccccccccccCcccCCceEEECCCCCchhHHHHHhhhhcc--ccEEEeeccceehh
Q 003795 413 VDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAG--VNFFSISASQFVEI 490 (795)
Q Consensus 413 ~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el~--~~~~~is~se~~~~ 490 (795)
+...|+++.|.++.+..+..++..+. .+...++++||+||||||||++|+++|+.++ .+++.++++++...
T Consensus 32 ~~~~~~~iiG~~~~~~~l~~~~~~~~-------~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~~ 104 (456)
T 2c9o_A 32 AKQAASGLVGQENAREACGVIVELIK-------SKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYST 104 (456)
T ss_dssp BCSEETTEESCHHHHHHHHHHHHHHH-------TTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCCS
T ss_pred hhhchhhccCHHHHHHHHHHHHHHHH-------hCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHHH
Confidence 45668999999999988888776553 2444567899999999999999999999998 89999999999999
Q ss_pred hhccchhhHHhHHHHH---HhcCCceeEhHHHHHHhhhccCCCCCCcc-hH---------------HHHHHHHHHhhh--
Q 003795 491 YVGVGASRVRSLYQEA---KDNAPSVVFIDELDAVGRERGLIKGSGGQ-ER---------------DATLNQLLVCLD-- 549 (795)
Q Consensus 491 ~~g~~~~~l~~lf~~a---r~~~p~Il~IDEID~l~~~r~~~~~Sgge-~~---------------r~~l~~LL~~ld-- 549 (795)
++|.... +..+|..+ +...|+++||||+|.+++.+.....++.. .. ....+.++..++
T Consensus 105 ~~~~~~~-~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~ 183 (456)
T 2c9o_A 105 EIKKTEV-LMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQKE 183 (456)
T ss_dssp SSCHHHH-HHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--------------CEEEEEEETTEEEEEEECHHHHHHHHHT
T ss_pred hhhhhHH-HHHHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHHhhc
Confidence 9988776 88999998 77889999999999998776432211110 00 012233555554
Q ss_pred cccCCCcEEEEeccCCCCCCCccccCCCcccc--eecCCCCC--HHHHHHHHHHHHccCCCCChhhHHHHHhhCCCCcHH
Q 003795 550 GFEGRGNVITIASTNRPDILDPALVRPGRFDR--KIFIPKPG--LIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGA 625 (795)
Q Consensus 550 ~~~~~~~VlVIatTN~~d~LdpaLlrpgRFd~--~I~~~~Pd--~~eR~~Il~~~l~~~~~~~d~dl~~LA~~t~G~sga 625 (795)
+......++|++|||.++.+|++++|+||||+ .++++.|+ .++|.+|++.+.. .|+..++..+.| |+
T Consensus 184 ~~~~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~~~~-------~dl~~~a~~t~g--ga 254 (456)
T 2c9o_A 184 RVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTL-------HDLDVANARPQG--GQ 254 (456)
T ss_dssp TCCTTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCSCSEEEEEEEEEEEH-------HHHHHTC---------
T ss_pred cCCCCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCchhHHHHHHHHHHHHH-------HHHHHHHHhCCC--hh
Confidence 22333345555999999999999999999999 56677774 4778888775542 378889999999 99
Q ss_pred HHHHHHHH
Q 003795 626 ELANIVEV 633 (795)
Q Consensus 626 dL~~lv~~ 633 (795)
||.++|+.
T Consensus 255 dl~~l~~~ 262 (456)
T 2c9o_A 255 DILSMMGQ 262 (456)
T ss_dssp --------
T ss_pred HHHHHHhh
Confidence 99999864
No 34
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.77 E-value=1e-18 Score=187.18 Aligned_cols=222 Identities=18% Similarity=0.242 Sum_probs=164.9
Q ss_pred CccCchHHHHHHHHHHHhccccccccccCcccCC---ceEEECCCCCchhHHHHHhhhhcc-------ccEEEeecccee
Q 003795 419 DVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPG---GILLCGPPGVGKTLLAKAVAGEAG-------VNFFSISASQFV 488 (795)
Q Consensus 419 ~~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~~---giLL~GPpGtGKTtLakaLA~el~-------~~~~~is~se~~ 488 (795)
++.|++..+..+.+++..+..+..+.+.|+..+. +++|+||||||||++|+++|..++ .+++.++++++.
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~ 111 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLV 111 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTC
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhh
Confidence 5789999999999888866555555555655443 499999999999999999999873 389999999998
Q ss_pred hhhhccchhhHHhHHHHHHhcCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcccCCCcEEEEeccCCCC-
Q 003795 489 EIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPD- 567 (795)
Q Consensus 489 ~~~~g~~~~~l~~lf~~ar~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVIatTN~~d- 567 (795)
..++|.....+..+|..+ .++++||||+|.+...+. ++......++.|+..++. ...+++||++||...
T Consensus 112 ~~~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~-----~~~~~~~~~~~Ll~~l~~--~~~~~~~i~~~~~~~~ 181 (309)
T 3syl_A 112 GQYIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDN-----ERDYGQEAIEILLQVMEN--NRDDLVVILAGYADRM 181 (309)
T ss_dssp CSSTTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC--------CCTHHHHHHHHHHHHH--CTTTCEEEEEECHHHH
T ss_pred hhcccccHHHHHHHHHhc---CCCEEEEEChhhhccCCC-----cccccHHHHHHHHHHHhc--CCCCEEEEEeCChHHH
Confidence 888888877777777766 467999999999864321 122234578888888884 456788999988654
Q ss_pred ----CCCccccCCCcccceecCCCCCHHHHHHHHHHHHccCCCC-ChhhHHHHHhh-------CCCCcHHHHHHHHHHHH
Q 003795 568 ----ILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASM-------TDGMVGAELANIVEVAA 635 (795)
Q Consensus 568 ----~LdpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~~~~-~d~dl~~LA~~-------t~G~sgadL~~lv~~A~ 635 (795)
.++|+|++ ||+..|.|++|+.+++..|++.++...... ++..+..++.. ....+++++.++++.|.
T Consensus 182 ~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~l~~a~ 259 (309)
T 3syl_A 182 ENFFQSNPGFRS--RIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLRRNQPHFANARSIRNALDRAR 259 (309)
T ss_dssp HHHHHHSTTHHH--HEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHH
T ss_pred HHHHhhCHHHHH--hCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHH
Confidence 35799998 999999999999999999999998866543 22234445544 33346899999999988
Q ss_pred HHHHHc----CCCccCHHHHH
Q 003795 636 INMMRD----GRTEITTDDLL 652 (795)
Q Consensus 636 ~~A~~~----~~~~It~edl~ 652 (795)
..+..+ ....++.+++.
T Consensus 260 ~~~~~r~~~~~~~~~~~~~l~ 280 (309)
T 3syl_A 260 LRQANRLFTASSGPLDARALS 280 (309)
T ss_dssp HHHHHHHHHC---CEEHHHHH
T ss_pred HHHHHHHHhccCCCCCHHHHh
Confidence 755443 33456666654
No 35
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.74 E-value=1.1e-18 Score=202.78 Aligned_cols=243 Identities=23% Similarity=0.280 Sum_probs=154.3
Q ss_pred HHHHHHHhcCCCCcccccC------ccccccCccCchHHHHHHHHHHHhccccccccccCcccCC-ceEEECCCCCchhH
Q 003795 394 GARVRRAYGKGLPQYLERG------VDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPG-GILLCGPPGVGKTL 466 (795)
Q Consensus 394 ~~~vsr~tgipv~~~~~~~------~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~~-giLL~GPpGtGKTt 466 (795)
...+.+++.+|+....... ......++.|+.+.+..+.+.+. +..++...++ .++|+|||||||||
T Consensus 51 ~~~l~~~~~lp~~~~~~~~~~~~~~~~~l~~di~G~~~vk~~i~~~~~-------l~~~~~~~~g~~vll~Gp~GtGKTt 123 (543)
T 3m6a_A 51 RNYIDWLVALPWTDETDDKLDLKEAGRLLDEEHHGLEKVKERILEYLA-------VQKLTKSLKGPILCLAGPPGVGKTS 123 (543)
T ss_dssp HHHHHHHHHSCSSCCCCCCCCTTTGGGTHHHHCSSCHHHHHHHHHHHH-------HHHHSSSCCSCEEEEESSSSSSHHH
T ss_pred HHHHHHHhcCCCCccccccccHHHHHHHHHHHhccHHHHHHHHHHHHH-------HHHhcccCCCCEEEEECCCCCCHHH
Confidence 4456666777776544322 22234556777777766654433 2223333333 49999999999999
Q ss_pred HHHHhhhhccccEEEeeccceeh---------hhhccchhhHHhHHHHHHhcCCceeEhHHHHHHhhhccCCCCCCcchH
Q 003795 467 LAKAVAGEAGVNFFSISASQFVE---------IYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQER 537 (795)
Q Consensus 467 LakaLA~el~~~~~~is~se~~~---------~~~g~~~~~l~~lf~~ar~~~p~Il~IDEID~l~~~r~~~~~Sgge~~ 537 (795)
|+++||+.++.+++.++++.... .|+|...+.+...|..+....| ++||||||.+...+.
T Consensus 124 lar~ia~~l~~~~~~i~~~~~~~~~~~~g~~~~~ig~~~~~~~~~~~~a~~~~~-vl~lDEid~l~~~~~---------- 192 (543)
T 3m6a_A 124 LAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAMPGRIIQGMKKAGKLNP-VFLLDEIDKMSSDFR---------- 192 (543)
T ss_dssp HHHHHHHHHTCEEEEECCCC--------------------CHHHHHHTTCSSSE-EEEEEESSSCC--------------
T ss_pred HHHHHHHhcCCCeEEEEecccchhhhhhhHHHHHhccCchHHHHHHHHhhccCC-EEEEhhhhhhhhhhc----------
Confidence 99999999999999999877543 3666666666677777666666 999999999865432
Q ss_pred HHHHHHHHHhhhcccC-------------CCcEEEEeccCCCCCCCccccCCCcccceecCCCCCHHHHHHHHHHHHcc-
Q 003795 538 DATLNQLLVCLDGFEG-------------RGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARK- 603 (795)
Q Consensus 538 r~~l~~LL~~ld~~~~-------------~~~VlVIatTN~~d~LdpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~- 603 (795)
....+.|+..|+.... ..+++||+|||.++.++|+|++ ||+ +|.|+.|+.+++..|++.++..
T Consensus 193 ~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~~~~l~~aL~~--R~~-vi~~~~~~~~e~~~Il~~~l~~~ 269 (543)
T 3m6a_A 193 GDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANNLATIPGPLRD--RME-IINIAGYTEIEKLEIVKDHLLPK 269 (543)
T ss_dssp -----CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSSTTTSCHHHHH--HEE-EEECCCCCHHHHHHHHHHTHHHH
T ss_pred cCHHHHHHHHHhhhhcceeecccCCeeecccceEEEeccCccccCCHHHHh--hcc-eeeeCCCCHHHHHHHHHHHHHHH
Confidence 1145667777764221 1678999999999999999999 996 7999999999999999987622
Q ss_pred ----CCCC------ChhhHHHHHh-hCCCCcHHHHHHHH----HHHHHHHHHc--CCCccCHHHHHHHHHH
Q 003795 604 ----KPMA------DDVDYLAVAS-MTDGMVGAELANIV----EVAAINMMRD--GRTEITTDDLLQAAQI 657 (795)
Q Consensus 604 ----~~~~------~d~dl~~LA~-~t~G~sgadL~~lv----~~A~~~A~~~--~~~~It~edl~~Al~~ 657 (795)
..+. ++..+..++. .+.....++|.+.+ +.|...+... +...|+.+++..++..
T Consensus 270 ~~~~~~~~~~~i~i~~~~l~~l~~~~~~~~~vR~L~~~i~~~~~~aa~~~~~~~~~~~~It~~~l~~~Lg~ 340 (543)
T 3m6a_A 270 QIKEHGLKKSNLQLRDQAILDIIRYYTREAGVRSLERQLAAICRKAAKAIVAEERKRITVTEKNLQDFIGK 340 (543)
T ss_dssp HHHHTTCCGGGCEECHHHHHHHHHHHCCCSSSHHHHHHHHHHHHHHHHHHHTTCCSCCEECTTTTHHHHCS
T ss_pred HHHHcCCCcccccCCHHHHHHHHHhCChhhchhHHHHHHHHHHHHHHHHHHhcCCcceecCHHHHHHHhCC
Confidence 2221 2223445554 33334455555544 4444443333 3446999999998763
No 36
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.73 E-value=2.3e-17 Score=181.00 Aligned_cols=218 Identities=19% Similarity=0.272 Sum_probs=159.7
Q ss_pred cccccCccCchHHHHHHHHHHHhccccccccccCcccCCceEEECCCCCchhHHHHHhhhhccc--cEEEeeccceehhh
Q 003795 414 DVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGV--NFFSISASQFVEIY 491 (795)
Q Consensus 414 ~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el~~--~~~~is~se~~~~~ 491 (795)
...|++..|.+..+..+..+...+.. +...+++++|+||||||||++|++++..++. +++.+++..+...+
T Consensus 40 ~~~~~~ivG~~~~~~~l~~l~~~~~~-------~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~ 112 (368)
T 3uk6_A 40 RQASQGMVGQLAARRAAGVVLEMIRE-------GKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLE 112 (368)
T ss_dssp CSEETTEESCHHHHHHHHHHHHHHHT-------TCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSCSS
T ss_pred CcchhhccChHHHHHHHHHHHHHHHc-------CCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhhcc
Confidence 44588999999888777766665532 2223467999999999999999999998864 77777766533222
Q ss_pred h-------------------------------------------------ccchhhHHhHHHHHHh---------cCCce
Q 003795 492 V-------------------------------------------------GVGASRVRSLYQEAKD---------NAPSV 513 (795)
Q Consensus 492 ~-------------------------------------------------g~~~~~l~~lf~~ar~---------~~p~I 513 (795)
+ |.....++..+..+.. ..|++
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~v 192 (368)
T 3uk6_A 113 MSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGV 192 (368)
T ss_dssp SCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCE
T ss_pred cchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCce
Confidence 1 1112334444444332 12679
Q ss_pred eEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcccCCCcEEEEecc-----------CCCCCCCccccCCCcccce
Q 003795 514 VFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIAST-----------NRPDILDPALVRPGRFDRK 582 (795)
Q Consensus 514 l~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVIatT-----------N~~d~LdpaLlrpgRFd~~ 582 (795)
+||||++.+... .++.|+..++. ....+++++++ |.+..++++|++ ||..
T Consensus 193 l~IDEi~~l~~~--------------~~~~L~~~le~--~~~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~s--R~~~- 253 (368)
T 3uk6_A 193 LFIDEVHMLDIE--------------SFSFLNRALES--DMAPVLIMATNRGITRIRGTSYQSPHGIPIDLLD--RLLI- 253 (368)
T ss_dssp EEEESGGGSBHH--------------HHHHHHHHTTC--TTCCEEEEEESCSEEECBTSSCEEETTCCHHHHT--TEEE-
T ss_pred EEEhhccccChH--------------HHHHHHHHhhC--cCCCeeeeecccceeeeeccCCCCcccCCHHHHh--hccE-
Confidence 999999988543 67777777764 23345554443 457789999999 9975
Q ss_pred ecCCCCCHHHHHHHHHHHHccCCCC-ChhhHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHH
Q 003795 583 IFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQI 657 (795)
Q Consensus 583 I~~~~Pd~~eR~~Il~~~l~~~~~~-~d~dl~~LA~~t~G~sgadL~~lv~~A~~~A~~~~~~~It~edl~~Al~~ 657 (795)
+.|++|+.+++..|++.++...... ++..+..++..+.+.+++++.++++.|...|...+...|+.+|+..++..
T Consensus 254 i~~~~~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~~ 329 (368)
T 3uk6_A 254 VSTTPYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSL 329 (368)
T ss_dssp EEECCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred EEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 8999999999999999888764432 34457778888876789999999999999998889999999999999874
No 37
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.71 E-value=2.3e-16 Score=171.24 Aligned_cols=214 Identities=18% Similarity=0.183 Sum_probs=162.5
Q ss_pred CccccccCccCchHHHHHHHHHHHhccccccccccCcccCCceEEECCCCCchhHHHHHhhhhccccEEEeeccceehhh
Q 003795 412 GVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIY 491 (795)
Q Consensus 412 ~~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~se~~~~~ 491 (795)
..+..|+++.|.+..+..+...+...... ...+.+++|+||||||||++|++++..++.+++.++++.+..
T Consensus 23 ~~p~~~~~iiG~~~~~~~l~~~l~~~~~~-------~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~~-- 93 (338)
T 3pfi_A 23 LRPSNFDGYIGQESIKKNLNVFIAAAKKR-------NECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIEK-- 93 (338)
T ss_dssp CCCCSGGGCCSCHHHHHHHHHHHHHHHHT-------TSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCCS--
T ss_pred cCCCCHHHhCChHHHHHHHHHHHHHHHhc-------CCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhccc--
Confidence 34557889999999988888777654211 123456999999999999999999999999999999876421
Q ss_pred hccchhhHHhHHHHHHhcCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhccc----------------CCC
Q 003795 492 VGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE----------------GRG 555 (795)
Q Consensus 492 ~g~~~~~l~~lf~~ar~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~----------------~~~ 555 (795)
...+...+.. ...++++|||||+.+... .++.|+..++... ...
T Consensus 94 ----~~~~~~~~~~--~~~~~vl~lDEi~~l~~~--------------~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~ 153 (338)
T 3pfi_A 94 ----SGDLAAILTN--LSEGDILFIDEIHRLSPA--------------IEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLP 153 (338)
T ss_dssp ----HHHHHHHHHT--CCTTCEEEEETGGGCCHH--------------HHHHHHHHHHTSCC---------CCCCCCCCC
T ss_pred ----hhHHHHHHHh--ccCCCEEEEechhhcCHH--------------HHHHHHHHHHhccchhhcccCccccceecCCC
Confidence 1222223322 245789999999988543 5666666665432 112
Q ss_pred cEEEEeccCCCCCCCccccCCCcccceecCCCCCHHHHHHHHHHHHccCCCC-ChhhHHHHHhhCCCCcHHHHHHHHHHH
Q 003795 556 NVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAELANIVEVA 634 (795)
Q Consensus 556 ~VlVIatTN~~d~LdpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~~~~-~d~dl~~LA~~t~G~sgadL~~lv~~A 634 (795)
++++|++||....++++|++ ||+..+.|++|+.+++..+++.++...... ++..+..++..+. .+.+++.++++.+
T Consensus 154 ~~~~i~atn~~~~l~~~L~~--R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~-G~~r~l~~~l~~~ 230 (338)
T 3pfi_A 154 KFTLIGATTRAGMLSNPLRD--RFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSR-STPRIALRLLKRV 230 (338)
T ss_dssp CCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTT-TCHHHHHHHHHHH
T ss_pred CeEEEEeCCCccccCHHHHh--hcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHC-cCHHHHHHHHHHH
Confidence 48999999999999999999 999999999999999999999888765543 3344667777555 4678888999999
Q ss_pred HHHHHHcCCCccCHHHHHHHHHH
Q 003795 635 AINMMRDGRTEITTDDLLQAAQI 657 (795)
Q Consensus 635 ~~~A~~~~~~~It~edl~~Al~~ 657 (795)
...+...+...|+.+++..++..
T Consensus 231 ~~~a~~~~~~~i~~~~~~~~~~~ 253 (338)
T 3pfi_A 231 RDFADVNDEEIITEKRANEALNS 253 (338)
T ss_dssp HHHHHHTTCSEECHHHHHHHHHH
T ss_pred HHHHHhhcCCccCHHHHHHHHHH
Confidence 88887778888999999988764
No 38
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.65 E-value=3.7e-16 Score=166.47 Aligned_cols=233 Identities=24% Similarity=0.319 Sum_probs=154.4
Q ss_pred CccCchHHHHHHHHHHHhc-ccccccccc-CcccCCceEEECCCCCchhHHHHHhhhhccccEEEeeccceeh-hhhccc
Q 003795 419 DVAGLGKIRLELEEIVKFF-THGEMYRRR-GVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVE-IYVGVG 495 (795)
Q Consensus 419 ~~~gl~~~~~~l~~lv~~~-~~~~~~~~~-gl~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~se~~~-~~~g~~ 495 (795)
.+.|.+..+..+...+... ......... +...+.+++|+||||||||+++++++..++.+++.++++.+.. .|+|..
T Consensus 16 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~~ 95 (310)
T 1ofh_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKE 95 (310)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGGS
T ss_pred hcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCcc
Confidence 4678888887777666531 111111000 1124567999999999999999999999999999999998766 455543
Q ss_pred h-hhHHhHHHHH-----HhcCCceeEhHHHHHHhhhccCCCCCCcch-HHHHHHHHHHhhhccc--------CCCcEEEE
Q 003795 496 A-SRVRSLYQEA-----KDNAPSVVFIDELDAVGRERGLIKGSGGQE-RDATLNQLLVCLDGFE--------GRGNVITI 560 (795)
Q Consensus 496 ~-~~l~~lf~~a-----r~~~p~Il~IDEID~l~~~r~~~~~Sgge~-~r~~l~~LL~~ld~~~--------~~~~VlVI 560 (795)
. ..+..++..+ ....+++++|||+|.+...... .+.+. ...+.+.|+..+++.. ...++++|
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~---~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i 172 (310)
T 1ofh_A 96 VDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEY---SGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFI 172 (310)
T ss_dssp TTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSC---CSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEE
T ss_pred HHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccc---cccchhHHHHHHHHHHHhcCCeEecccccccCCcEEEE
Confidence 3 2344444422 1123679999999998765321 12222 2234677777777531 23578888
Q ss_pred ec----cCCCCCCCccccCCCcccceecCCCCCHHHHHHHHHHH-----------HccCCC---CChhhHHHHHhhC---
Q 003795 561 AS----TNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVH-----------ARKKPM---ADDVDYLAVASMT--- 619 (795)
Q Consensus 561 at----TN~~d~LdpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~-----------l~~~~~---~~d~dl~~LA~~t--- 619 (795)
++ ++.+..++|+|++ ||+..|.|++|+.+++..|++.+ +..... .++..+..++..+
T Consensus 173 ~~~~~~~~~~~~l~~~l~~--R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~ 250 (310)
T 1ofh_A 173 ASGAFQVARPSDLIPELQG--RLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRV 250 (310)
T ss_dssp EEECCSSSCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHHHHHHHHHHH
T ss_pred EcCCcccCCcccCCHHHHh--hCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHHHHHHHHhhhh
Confidence 87 5677889999998 99988999999999999999831 111221 2333455666655
Q ss_pred ----CCCcHHHHHHHHHHHHHHHHHc-----CCC-ccCHHHHHHHHH
Q 003795 620 ----DGMVGAELANIVEVAAINMMRD-----GRT-EITTDDLLQAAQ 656 (795)
Q Consensus 620 ----~G~sgadL~~lv~~A~~~A~~~-----~~~-~It~edl~~Al~ 656 (795)
.+.+.+.+.++++.+...+... +.. .|+.+++..++.
T Consensus 251 ~~~~~~g~~R~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~ 297 (310)
T 1ofh_A 251 NEKTENIGARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADALG 297 (310)
T ss_dssp HHHSCCCTTHHHHHHHHHHSHHHHHHGGGCTTCEEEECHHHHHHHTC
T ss_pred cccccccCcHHHHHHHHHHHHhhhcCCccccCCEEEEeeHHHHHHHH
Confidence 2567889999998876543321 211 499999998865
No 39
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.65 E-value=1.5e-15 Score=163.28 Aligned_cols=212 Identities=20% Similarity=0.250 Sum_probs=156.6
Q ss_pred ccccccCccCchHHHHHHHHHHHhccccccccccCcccCCceEEECCCCCchhHHHHHhhhhccccEEEeeccceehhhh
Q 003795 413 VDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYV 492 (795)
Q Consensus 413 ~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~se~~~~~~ 492 (795)
.+..|++..|....+..+..++...... ...+.+++|+||+|||||++|++++..++.+++.++++.+..
T Consensus 7 ~p~~~~~~ig~~~~~~~l~~~l~~~~~~-------~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~--- 76 (324)
T 1hqc_A 7 RPKTLDEYIGQERLKQKLRVYLEAAKAR-------KEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK--- 76 (324)
T ss_dssp CCCSTTTCCSCHHHHHHHHHHHHHHHHH-------CSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCS---
T ss_pred CcccHHHhhCHHHHHHHHHHHHHHHHcc-------CCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCC---
Confidence 3457888899888888887776654211 123456999999999999999999999999999888876432
Q ss_pred ccchhhHHhHHHHHHh--cCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhccc----------------CC
Q 003795 493 GVGASRVRSLYQEAKD--NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE----------------GR 554 (795)
Q Consensus 493 g~~~~~l~~lf~~ar~--~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~----------------~~ 554 (795)
. ..++..... ..++++||||++.+... ....|+..++... ..
T Consensus 77 ---~---~~l~~~l~~~~~~~~~l~lDEi~~l~~~--------------~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~ 136 (324)
T 1hqc_A 77 ---P---GDLAAILANSLEEGDILFIDEIHRLSRQ--------------AEEHLYPAMEDFVMDIVIGQGPAARTIRLEL 136 (324)
T ss_dssp ---H---HHHHHHHTTTCCTTCEEEETTTTSCCHH--------------HHHHHHHHHHHSEEEECCSSSSSCCCEEEEC
T ss_pred ---h---HHHHHHHHHhccCCCEEEEECCcccccc--------------hHHHHHHHHHhhhhHHhccccccccccccCC
Confidence 1 223333332 45789999999887543 3445555554321 11
Q ss_pred CcEEEEeccCCCCCCCccccCCCcccceecCCCCCHHHHHHHHHHHHccCCCC-ChhhHHHHHhhCCCCcHHHHHHHHHH
Q 003795 555 GNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAELANIVEV 633 (795)
Q Consensus 555 ~~VlVIatTN~~d~LdpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~~~~-~d~dl~~LA~~t~G~sgadL~~lv~~ 633 (795)
.++++|++||.++.++++|.+ ||+.++.+++|+.+++..++..++...... ++..+..++..+.| +++.+.++++.
T Consensus 137 ~~~~~i~~t~~~~~~~~~l~~--R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~l~~~l~~ 213 (324)
T 1hqc_A 137 PRFTLIGATTRPGLITAPLLS--RFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRG-TMRVAKRLFRR 213 (324)
T ss_dssp CCCEEEEEESCCSSCSCSTTT--TCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCS-CHHHHHHHHHH
T ss_pred CCEEEEEeCCCcccCCHHHHh--cccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccC-CHHHHHHHHHH
Confidence 358899999999999999998 998899999999999999999888755432 33456778888865 56888899988
Q ss_pred HHHHHHHcCCCccCHHHHHHHHHH
Q 003795 634 AAINMMRDGRTEITTDDLLQAAQI 657 (795)
Q Consensus 634 A~~~A~~~~~~~It~edl~~Al~~ 657 (795)
+...+...+...|+.+++..++..
T Consensus 214 ~~~~a~~~~~~~i~~~~~~~~~~~ 237 (324)
T 1hqc_A 214 VRDFAQVAGEEVITRERALEALAA 237 (324)
T ss_dssp HTTTSTTTSCSCCCHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHH
Confidence 876666566678999999888764
No 40
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.64 E-value=1.1e-15 Score=161.40 Aligned_cols=196 Identities=20% Similarity=0.272 Sum_probs=132.6
Q ss_pred CcccCCceEEECCCCCchhHHHHHhhhhccccEEEeeccceehh-hhccchhhHHhHHHHHHhcCCceeEhHHHHHHhhh
Q 003795 447 GVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEI-YVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRE 525 (795)
Q Consensus 447 gl~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~se~~~~-~~g~~~~~l~~lf~~ar~~~p~Il~IDEID~l~~~ 525 (795)
+...+.+++|+||||||||++|+++|..++.+++.+++++.... ..+.....++.+|..+....+++++|||+|.+.+.
T Consensus 60 ~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~ 139 (272)
T 1d2n_A 60 DRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDY 139 (272)
T ss_dssp SSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTC
T ss_pred CCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhcc
Confidence 34556679999999999999999999999999999987652211 11112245677888887777899999999999654
Q ss_pred ccCCCCCCcchHHHHHHHHHHhhhccc-CCCcEEEEeccCCCCCCCc-cccCCCcccceecCCCCCHHHHHHHHHHHHcc
Q 003795 526 RGLIKGSGGQERDATLNQLLVCLDGFE-GRGNVITIASTNRPDILDP-ALVRPGRFDRKIFIPKPGLIGRMEILKVHARK 603 (795)
Q Consensus 526 r~~~~~Sgge~~r~~l~~LL~~ld~~~-~~~~VlVIatTN~~d~Ldp-aLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~ 603 (795)
+. .+.......++.|...+++.. ...+++||+|||.++.+++ .+.+ ||+..|.+|+++. |.+|.......
T Consensus 140 ~~----~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~--rf~~~i~~p~l~~--r~~i~~i~~~~ 211 (272)
T 1d2n_A 140 VP----IGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLN--AFSTTIHVPNIAT--GEQLLEALELL 211 (272)
T ss_dssp BT----TTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTT--TSSEEEECCCEEE--HHHHHHHHHHH
T ss_pred CC----CChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhhc--ccceEEcCCCccH--HHHHHHHHHhc
Confidence 32 122233446666666666543 3456889999999988887 5555 9998988876654 33344333333
Q ss_pred CCCCChhhHHHHHhhCCCC----cHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Q 003795 604 KPMADDVDYLAVASMTDGM----VGAELANIVEVAAINMMRDGRTEITTDDLLQAAQ 656 (795)
Q Consensus 604 ~~~~~d~dl~~LA~~t~G~----sgadL~~lv~~A~~~A~~~~~~~It~edl~~Al~ 656 (795)
..+ ++.++..++..+.|+ +.+++.++++.|.. .......+++..++.
T Consensus 212 ~~~-~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~~-----~~~~~~~~~~~~~l~ 262 (272)
T 1d2n_A 212 GNF-KDKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQ-----MDPEYRVRKFLALLR 262 (272)
T ss_dssp TCS-CHHHHHHHHHHHTTSEEEECHHHHHHHHHHHTT-----SCGGGHHHHHHHHHH
T ss_pred CCC-CHHHHHHHHHHhcCCCccccHHHHHHHHHHHhh-----hchHHHHHHHHHHHH
Confidence 333 456688899998887 56677777765542 223345556665554
No 41
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.63 E-value=1.3e-15 Score=167.74 Aligned_cols=220 Identities=25% Similarity=0.300 Sum_probs=144.9
Q ss_pred ccCchHHHHHHHHHHHhccccccc--cccCc-ccCCceEEECCCCCchhHHHHHhhhhccccEEEeeccceehh-hhccc
Q 003795 420 VAGLGKIRLELEEIVKFFTHGEMY--RRRGV-RIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEI-YVGVG 495 (795)
Q Consensus 420 ~~gl~~~~~~l~~lv~~~~~~~~~--~~~gl-~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~se~~~~-~~g~~ 495 (795)
+.|.+..+..+...+......... ...+. ..+.+++|+||||||||++|++||..++.+++.++++.+... |+|..
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~~ 96 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGED 96 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhccccccccc
Confidence 578888887777766422111100 00111 234569999999999999999999999999999999987754 77765
Q ss_pred -hhhHHhHHHHH----HhcCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhccc------------------
Q 003795 496 -ASRVRSLYQEA----KDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE------------------ 552 (795)
Q Consensus 496 -~~~l~~lf~~a----r~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~------------------ 552 (795)
...+..+|..+ ....++++||||+|.+...+.....+.+.....+++.|+..|++..
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~~~ 176 (363)
T 3hws_A 97 VENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQ 176 (363)
T ss_dssp HTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC----------------CCC
T ss_pred HHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccCccccccCCCceEE
Confidence 34455666554 3345789999999999876543332333334458889998888421
Q ss_pred -CCCcEEEEeccCCC----------CC-----------------------------------CCccccCCCcccceecCC
Q 003795 553 -GRGNVITIASTNRP----------DI-----------------------------------LDPALVRPGRFDRKIFIP 586 (795)
Q Consensus 553 -~~~~VlVIatTN~~----------d~-----------------------------------LdpaLlrpgRFd~~I~~~ 586 (795)
...|+++|+++|.. .. +.|+|++ ||+.++.|+
T Consensus 177 i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~--R~~~~~~~~ 254 (363)
T 3hws_A 177 VDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIG--RLPVVATLN 254 (363)
T ss_dssp CCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHT--TCCEEEECC
T ss_pred EECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhc--ccCeeeecC
Confidence 22445555555432 11 6788887 999999999
Q ss_pred CCCHHHHHHHHHH----HH-------ccCCCC---ChhhHHHHHh--hCCCCcHHHHHHHHHHHHHHHHHc
Q 003795 587 KPGLIGRMEILKV----HA-------RKKPMA---DDVDYLAVAS--MTDGMVGAELANIVEVAAINMMRD 641 (795)
Q Consensus 587 ~Pd~~eR~~Il~~----~l-------~~~~~~---~d~dl~~LA~--~t~G~sgadL~~lv~~A~~~A~~~ 641 (795)
+|+.+++.+|+.. .+ ...... ++..+..|+. ....+..++|.++++.++..+..+
T Consensus 255 pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~~~ie~~~~~~l~~ 325 (363)
T 3hws_A 255 ELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYD 325 (363)
T ss_dssp CCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCccCchHHHHHHHHHHHHHHHh
Confidence 9999999999885 21 111111 2223455554 334556788999998888776654
No 42
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.63 E-value=2.2e-16 Score=177.86 Aligned_cols=170 Identities=22% Similarity=0.252 Sum_probs=76.3
Q ss_pred cCccCchHHHHHHHHHHHh-ccccccccccCcc-cCCceEEECCCCCchhHHHHHhhhhccccEEEeeccceeh-hhhcc
Q 003795 418 SDVAGLGKIRLELEEIVKF-FTHGEMYRRRGVR-IPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVE-IYVGV 494 (795)
Q Consensus 418 ~~~~gl~~~~~~l~~lv~~-~~~~~~~~~~gl~-i~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~se~~~-~~~g~ 494 (795)
.++.|+++.+..+..++.. +.....+..++.. .+++++|+||||||||+++++||+.++.+++.++++.+.+ .|+|.
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~ 94 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCC
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeec
Confidence 3578999999888776643 2333333333333 3567999999999999999999999999999999999888 48886
Q ss_pred -chhhHHhHHHHHHhcCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcccCCCcEEEEec-cCCCCCCCcc
Q 003795 495 -GASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIAS-TNRPDILDPA 572 (795)
Q Consensus 495 -~~~~l~~lf~~ar~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVIat-TN~~d~Ldpa 572 (795)
....++.+|+.+... +++||++.+... ..+...+.+++.|+..||++....++ +++ ||+++.||++
T Consensus 95 d~e~~lr~lf~~a~~~----~~~De~d~~~~~------~~~~~e~rvl~~LL~~~dg~~~~~~v--~a~~TN~~~~ld~a 162 (444)
T 1g41_A 95 EVDSIIRDLTDSAMKL----VRQQEIAKNRAR------AEDVAEERILDALLPPAKNQWGEVEN--HDSHSSTRQAFRKK 162 (444)
T ss_dssp CTHHHHHHHHHHHHHH----HHHHHHHSCC--------------------------------------------------
T ss_pred cHHHHHHHHHHHHHhc----chhhhhhhhhcc------chhhHHHHHHHHHHHHhhcccccccc--ccccccCHHHHHHH
Confidence 567778899888764 458998776432 12233456899999999998766554 444 9999999999
Q ss_pred ccCCCcccceecCCCCCHH-HHHHHHHH
Q 003795 573 LVRPGRFDRKIFIPKPGLI-GRMEILKV 599 (795)
Q Consensus 573 LlrpgRFd~~I~~~~Pd~~-eR~~Il~~ 599 (795)
|+||||||+.|+|+.|+.. .|.+|+..
T Consensus 163 L~rggr~D~~i~i~lP~~~~~~~ei~~~ 190 (444)
T 1g41_A 163 LREGQLDDKEIEIDVSAGVSMGVEIMAP 190 (444)
T ss_dssp ----------------------------
T ss_pred HHcCCCcceEEEEcCCCCccchhhhhcC
Confidence 9999999999999999988 78888753
No 43
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.62 E-value=1.5e-16 Score=191.60 Aligned_cols=225 Identities=21% Similarity=0.260 Sum_probs=157.6
Q ss_pred hhchhhhHHHHHHHhcCCCCcccccCcc-------ccccCccCchHHHHHHHHHHHhccccccccccCccc---C-CceE
Q 003795 387 AMQFMKSGARVRRAYGKGLPQYLERGVD-------VKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRI---P-GGIL 455 (795)
Q Consensus 387 ~v~~~~~~~~vsr~tgipv~~~~~~~~~-------~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i---~-~giL 455 (795)
.++...+...+++|+++|+......+.. .....+.|....+..+...+... ..|+.. | ++++
T Consensus 420 ~v~~~di~~~~~~~~~ip~~~~~~~~~~~l~~l~~~l~~~v~g~~~~~~~l~~~i~~~-------~~g~~~~~~p~~~~l 492 (758)
T 1r6b_X 420 TVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMA-------RAGLGHEHKPVGSFL 492 (758)
T ss_dssp SCCHHHHHHHHHHHSCCCCCCSSSSHHHHHHHHHHHHTTTSCSCHHHHHHHHHHHHHH-------HTTCSCTTSCSEEEE
T ss_pred ccCHHHHHHHHHHhcCCCccccchhHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHH-------hcccCCCCCCceEEE
Confidence 3566678888999999998766443321 11234667777776666555432 233322 2 3499
Q ss_pred EECCCCCchhHHHHHhhhhccccEEEeeccceehh------------hhccchhhHHhHHHHHHhcCCceeEhHHHHHHh
Q 003795 456 LCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEI------------YVGVGASRVRSLYQEAKDNAPSVVFIDELDAVG 523 (795)
Q Consensus 456 L~GPpGtGKTtLakaLA~el~~~~~~is~se~~~~------------~~g~~~~~l~~lf~~ar~~~p~Il~IDEID~l~ 523 (795)
|+||||||||++|++|+..++.+++.++++++.+. |+|.... ..+...++..+++|+|||||+.+.
T Consensus 493 l~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~~~l~g~~~g~~g~~~~--~~l~~~~~~~~~~vl~lDEi~~~~ 570 (758)
T 1r6b_X 493 FAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQG--GLLTDAVIKHPHAVLLLDEIEKAH 570 (758)
T ss_dssp EECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCCSSSCCCCSCSHHHHHT--THHHHHHHHCSSEEEEEETGGGSC
T ss_pred EECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhHhhhcCCCCCCcCcccc--chHHHHHHhCCCcEEEEeCccccC
Confidence 99999999999999999999999999999998664 3433222 235666677778999999999886
Q ss_pred hhccCCCCCCcchHHHHHHHHHHhhhccc---------CCCcEEEEeccCCCC-------------------------CC
Q 003795 524 RERGLIKGSGGQERDATLNQLLVCLDGFE---------GRGNVITIASTNRPD-------------------------IL 569 (795)
Q Consensus 524 ~~r~~~~~Sgge~~r~~l~~LL~~ld~~~---------~~~~VlVIatTN~~d-------------------------~L 569 (795)
+. +++.|++.|+... +..+++||+|||... .+
T Consensus 571 ~~--------------~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 636 (758)
T 1r6b_X 571 PD--------------VFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIF 636 (758)
T ss_dssp HH--------------HHHHHHHHHHHSEEEETTTEEEECTTEEEEEEECSSCC-----------------CHHHHHHHS
T ss_pred HH--------------HHHHHHHHhcCcEEEcCCCCEEecCCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhc
Confidence 54 7888888887421 125789999999854 67
Q ss_pred CccccCCCcccceecCCCCCHHHHHHHHHHHHccC-------C---CCChhhHHHHHhhC--CCCcHHHHHHHHHHHHH
Q 003795 570 DPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKK-------P---MADDVDYLAVASMT--DGMVGAELANIVEVAAI 636 (795)
Q Consensus 570 dpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~-------~---~~~d~dl~~LA~~t--~G~sgadL~~lv~~A~~ 636 (795)
+|+|++ ||+.+|.|++|+.+++..|++.++... . ..++..+..++... ..+..++|.++++.++.
T Consensus 637 ~~~l~~--R~~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~l~~~i~~~~~ 713 (758)
T 1r6b_X 637 TPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLK 713 (758)
T ss_dssp CHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHTTEEEEECHHHHHHHHHHHCBTTTBTTTHHHHHHHHHT
T ss_pred CHHHHh--hCCcceeeCCCCHHHHHHHHHHHHHHHHHHHHHCCcEEEeCHHHHHHHHHhCCCcCCCchHHHHHHHHHHH
Confidence 889988 999999999999999999999887532 1 01222244454432 33456677777766554
No 44
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.59 E-value=8.9e-15 Score=158.20 Aligned_cols=191 Identities=17% Similarity=0.187 Sum_probs=131.3
Q ss_pred CCceEEECCCCCchhHHHHHhhhhc---cccEEEeeccceehhhhccchhhHHhHHHHHHhcCCceeEhHHHHHHhhhcc
Q 003795 451 PGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERG 527 (795)
Q Consensus 451 ~~giLL~GPpGtGKTtLakaLA~el---~~~~~~is~se~~~~~~g~~~~~l~~lf~~ar~~~p~Il~IDEID~l~~~r~ 527 (795)
+.+++|+||||||||||++++++.+ +.+++++++.++...+.+.........|.... ..+++++|||++.+....
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~vL~iDEi~~l~~~~- 114 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHLKKGTINEFRNMY-KSVDLLLLDDVQFLSGKE- 114 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHHHHHHTCHHHHHHHH-HTCSEEEEECGGGGTTCH-
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHcCcHHHHHHHh-cCCCEEEEcCcccccCCh-
Confidence 4569999999999999999999988 78899999888765544332222112232222 247899999999885421
Q ss_pred CCCCCCcchHHHHHHHHHHhhhcccCCCcEEEEeccCCCC---CCCccccCCCccc--ceecCCCCCHHHHHHHHHHHHc
Q 003795 528 LIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPD---ILDPALVRPGRFD--RKIFIPKPGLIGRMEILKVHAR 602 (795)
Q Consensus 528 ~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVIatTN~~d---~LdpaLlrpgRFd--~~I~~~~Pd~~eR~~Il~~~l~ 602 (795)
. ....++..++.....+..+|+++++.+. .++++|++ ||+ ..+.+++ +.+++..|++.++.
T Consensus 115 --------~---~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~s--R~~~~~~i~l~~-~~~e~~~il~~~~~ 180 (324)
T 1l8q_A 115 --------R---TQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVS--RFEGGILVEIEL-DNKTRFKIIKEKLK 180 (324)
T ss_dssp --------H---HHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHH--HHHTSEEEECCC-CHHHHHHHHHHHHH
T ss_pred --------H---HHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhh--cccCceEEEeCC-CHHHHHHHHHHHHH
Confidence 1 3334444444333344567777777776 68899988 886 6789999 99999999999887
Q ss_pred cCCCC-ChhhHHHHHhhCCCCcHHHHHHHHHHHHHH---HHH-cCCCcc-CHHHHHHHHHHHH
Q 003795 603 KKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAIN---MMR-DGRTEI-TTDDLLQAAQIEE 659 (795)
Q Consensus 603 ~~~~~-~d~dl~~LA~~t~G~sgadL~~lv~~A~~~---A~~-~~~~~I-t~edl~~Al~~~~ 659 (795)
..... ++..+..++..+ .+.+++.++++.+... +.. .+...| +.+++.+++....
T Consensus 181 ~~~~~l~~~~l~~l~~~~--g~~r~l~~~l~~~~~~~~~~l~~~~~~~i~t~~~i~~~~~~~~ 241 (324)
T 1l8q_A 181 EFNLELRKEVIDYLLENT--KNVREIEGKIKLIKLKGFEGLERKERKERDKLMQIVEFVANYY 241 (324)
T ss_dssp HTTCCCCHHHHHHHHHHC--SSHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCCCHHHHHHHHHhC--CCHHHHHHHHHHHHHcCHHHhccccccCCCCHHHHHHHHHHHh
Confidence 54432 334477888888 4678888888877654 000 222357 8888888877544
No 45
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.58 E-value=5e-15 Score=167.63 Aligned_cols=190 Identities=16% Similarity=0.211 Sum_probs=136.2
Q ss_pred CCceEEECCCCCchhHHHHHhhhhc-----cccEEEeeccceehhhhccchhhHHhHHHHHHhcCCceeEhHHHHHHhhh
Q 003795 451 PGGILLCGPPGVGKTLLAKAVAGEA-----GVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRE 525 (795)
Q Consensus 451 ~~giLL~GPpGtGKTtLakaLA~el-----~~~~~~is~se~~~~~~g~~~~~l~~lf~~ar~~~p~Il~IDEID~l~~~ 525 (795)
+.+++|+||||+|||||+++|++.+ +.+++++++..+...+.+.........|.......+++++|||++.+.+.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~ 209 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGK 209 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSC
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCC
Confidence 4569999999999999999999987 77888999887655443322221112233333336789999999988542
Q ss_pred ccCCCCCCcchHHHHHHHHHHhhhcccCCCcEEEEeccCCCCC---CCccccCCCccc--ceecCCCCCHHHHHHHHHHH
Q 003795 526 RGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDI---LDPALVRPGRFD--RKIFIPKPGLIGRMEILKVH 600 (795)
Q Consensus 526 r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVIatTN~~d~---LdpaLlrpgRFd--~~I~~~~Pd~~eR~~Il~~~ 600 (795)
. .....|+..++.....+..+||++.+.+.. ++++|++ ||. ..+.+++|+.++|..|++..
T Consensus 210 ~------------~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~s--R~~~g~~i~l~~p~~e~r~~iL~~~ 275 (440)
T 2z4s_A 210 T------------GVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKSIARKM 275 (440)
T ss_dssp H------------HHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHH--HHHSSBCCBCCCCCHHHHHHHHHHH
T ss_pred h------------HHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHh--hccCCeEEEeCCCCHHHHHHHHHHH
Confidence 1 134445555444444455666666666654 7899988 885 78999999999999999988
Q ss_pred HccCCC-CChhhHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Q 003795 601 ARKKPM-ADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQ 656 (795)
Q Consensus 601 l~~~~~-~~d~dl~~LA~~t~G~sgadL~~lv~~A~~~A~~~~~~~It~edl~~Al~ 656 (795)
+....+ .++..+..++..+.| +.+++.++++.+...|...+. .|+.+++.+++.
T Consensus 276 ~~~~~~~i~~e~l~~la~~~~g-n~R~l~~~L~~~~~~a~~~~~-~It~~~~~~~l~ 330 (440)
T 2z4s_A 276 LEIEHGELPEEVLNFVAENVDD-NLRRLRGAIIKLLVYKETTGK-EVDLKEAILLLK 330 (440)
T ss_dssp HHHHTCCCCTTHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHSSS-CCCHHHHHHHTS
T ss_pred HHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHH
Confidence 764332 223336778888864 889999999999888776664 699999999875
No 46
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.57 E-value=3.4e-14 Score=155.45 Aligned_cols=221 Identities=17% Similarity=0.156 Sum_probs=149.3
Q ss_pred ccCccCchHHHHHHHHHHHhccccccccccCcccCCceEEECCCCCchhHHHHHhhhhc---------cccEEEeeccce
Q 003795 417 FSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEA---------GVNFFSISASQF 487 (795)
Q Consensus 417 f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el---------~~~~~~is~se~ 487 (795)
.+...|.++.+..+...+... .....+.+++|+||||||||++++.++..+ +.+++.+++...
T Consensus 18 p~~~~gr~~~~~~l~~~l~~~--------~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 89 (387)
T 2v1u_A 18 PDVLPHREAELRRLAEVLAPA--------LRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHR 89 (387)
T ss_dssp CSCCTTCHHHHHHHHHTTGGG--------TSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTS
T ss_pred CCCCCCHHHHHHHHHHHHHHH--------HcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcC
Confidence 355667776665555443321 111334569999999999999999999987 778888987754
Q ss_pred ehhh----------------hccchhh-HHhHHHHHHhc-CCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhh
Q 003795 488 VEIY----------------VGVGASR-VRSLYQEAKDN-APSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLD 549 (795)
Q Consensus 488 ~~~~----------------~g~~~~~-l~~lf~~ar~~-~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld 549 (795)
.+.+ .|..... +..+++..... .|++++|||++.+...+ .....+..++..++
T Consensus 90 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~---------~~~~~l~~l~~~~~ 160 (387)
T 2v1u_A 90 ETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRP---------GGQDLLYRITRINQ 160 (387)
T ss_dssp CSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHST---------THHHHHHHHHHGGG
T ss_pred CCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccC---------CCChHHHhHhhchh
Confidence 3321 0111122 23344444333 37799999999986431 01235666666655
Q ss_pred cccCCCcEEEEeccCCC---CCCCccccCCCcccc-eecCCCCCHHHHHHHHHHHHcc----CCCCChhhHHHHHhhCC-
Q 003795 550 GFEGRGNVITIASTNRP---DILDPALVRPGRFDR-KIFIPKPGLIGRMEILKVHARK----KPMADDVDYLAVASMTD- 620 (795)
Q Consensus 550 ~~~~~~~VlVIatTN~~---d~LdpaLlrpgRFd~-~I~~~~Pd~~eR~~Il~~~l~~----~~~~~d~dl~~LA~~t~- 620 (795)
......++.+|++||.+ +.+++.+.+ ||.. .+.|++|+.+++..|+..++.. ..+. +..+..++..+.
T Consensus 161 ~~~~~~~~~~I~~t~~~~~~~~l~~~l~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~-~~~~~~l~~~~~~ 237 (387)
T 2v1u_A 161 ELGDRVWVSLVGITNSLGFVENLEPRVKS--SLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLD-PDVVPLCAALAAR 237 (387)
T ss_dssp CC-----CEEEEECSCSTTSSSSCHHHHT--TTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBC-SSHHHHHHHHHHS
T ss_pred hcCCCceEEEEEEECCCchHhhhCHHHHh--cCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCC-HHHHHHHHHHHHH
Confidence 33215678899999887 678889988 8875 8999999999999999988764 2222 233556666665
Q ss_pred --CCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHH
Q 003795 621 --GMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIE 658 (795)
Q Consensus 621 --G~sgadL~~lv~~A~~~A~~~~~~~It~edl~~Al~~~ 658 (795)
| .++.+.++++.|...|...+...|+.+++..|+...
T Consensus 238 ~~G-~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~ 276 (387)
T 2v1u_A 238 EHG-DARRALDLLRVAGEIAERRREERVRREHVYSARAEI 276 (387)
T ss_dssp SSC-CHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHH
T ss_pred hcc-CHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 5 566777999999888887788889999999998743
No 47
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.57 E-value=4e-14 Score=141.73 Aligned_cols=201 Identities=20% Similarity=0.165 Sum_probs=139.5
Q ss_pred ccccccCccCchHHHHHHHHHHHhccccccccccCcccCCceEEECCCCCchhHHHHHhhhhc-----cccEEEeeccce
Q 003795 413 VDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEA-----GVNFFSISASQF 487 (795)
Q Consensus 413 ~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el-----~~~~~~is~se~ 487 (795)
.+..|.+..|....+..+.+.+..- .+.+++|+||+|+|||++++.++..+ ...++.++++..
T Consensus 12 ~p~~~~~~~g~~~~~~~l~~~l~~~------------~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~ 79 (226)
T 2chg_A 12 RPRTLDEVVGQDEVIQRLKGYVERK------------NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDE 79 (226)
T ss_dssp SCSSGGGCCSCHHHHHHHHHHHHTT------------CCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCT
T ss_pred CCCCHHHHcCcHHHHHHHHHHHhCC------------CCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccc
Confidence 4566777888888777766655421 12248999999999999999999875 345677766542
Q ss_pred ehhhhccchhhHHhHHHHHH------hcCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcccCCCcEEEEe
Q 003795 488 VEIYVGVGASRVRSLYQEAK------DNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIA 561 (795)
Q Consensus 488 ~~~~~g~~~~~l~~lf~~ar------~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVIa 561 (795)
.. ...+...+.... ...+.+++|||++.+... ..+.|+..++. ...++.+|+
T Consensus 80 ~~------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~--------------~~~~l~~~l~~--~~~~~~~i~ 137 (226)
T 2chg_A 80 RG------IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTAD--------------AQAALRRTMEM--YSKSCRFIL 137 (226)
T ss_dssp TC------HHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCHH--------------HHHHHHHHHHH--TTTTEEEEE
T ss_pred cC------hHHHHHHHHHHhcccCCCccCceEEEEeChhhcCHH--------------HHHHHHHHHHh--cCCCCeEEE
Confidence 21 111222222222 245789999999987543 45556666663 345678888
Q ss_pred ccCCCCCCCccccCCCcccceecCCCCCHHHHHHHHHHHHccCCCC-ChhhHHHHHhhCCCCcHHHHHHHHHHHHHHHHH
Q 003795 562 STNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMR 640 (795)
Q Consensus 562 tTN~~d~LdpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~~~~-~d~dl~~LA~~t~G~sgadL~~lv~~A~~~A~~ 640 (795)
+||.+..+++++.+ ||. .+.+++|+.++...++..++...... ++..+..++..+.| +.+.+.++++.++..+
T Consensus 138 ~~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~~~~-- 211 (226)
T 2chg_A 138 SCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG-DFRKAINALQGAAAIG-- 211 (226)
T ss_dssp EESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT-CHHHHHHHHHHHHHTC--
T ss_pred EeCChhhcCHHHHH--hCc-eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHhcC--
Confidence 99999999999998 887 89999999999999999887643332 33446677777755 5566666666655332
Q ss_pred cCCCccCHHHHHHHHH
Q 003795 641 DGRTEITTDDLLQAAQ 656 (795)
Q Consensus 641 ~~~~~It~edl~~Al~ 656 (795)
..|+.+|+..++.
T Consensus 212 ---~~I~~~~v~~~~~ 224 (226)
T 2chg_A 212 ---EVVDADTIYQITA 224 (226)
T ss_dssp ---SCBCHHHHHHHHH
T ss_pred ---ceecHHHHHHHhc
Confidence 5799999999874
No 48
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.56 E-value=2.4e-14 Score=155.16 Aligned_cols=212 Identities=18% Similarity=0.176 Sum_probs=143.1
Q ss_pred cccCccCchHHHHHHHHHHHhccccccccccCcccCCceEEECCCCCchhHHHHHhhhhccccEEEeecccee--hhhhc
Q 003795 416 KFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFV--EIYVG 493 (795)
Q Consensus 416 ~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~se~~--~~~~g 493 (795)
.+..+.|....+..+...... .++++|+||||||||+|++++|+.++.++..++++... ....|
T Consensus 25 ~~~~i~g~~~~~~~l~~~l~~--------------~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l~g 90 (331)
T 2r44_A 25 VGKVVVGQKYMINRLLIGICT--------------GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLIG 90 (331)
T ss_dssp HTTTCCSCHHHHHHHHHHHHH--------------TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHHE
T ss_pred hccceeCcHHHHHHHHHHHHc--------------CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhcCC
Confidence 345667777766554443321 24699999999999999999999999999888874211 11111
Q ss_pred cchhhH-HhHHHHHHhcC---CceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcc---------cCCCcEEEE
Q 003795 494 VGASRV-RSLYQEAKDNA---PSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGF---------EGRGNVITI 560 (795)
Q Consensus 494 ~~~~~l-~~lf~~ar~~~---p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~---------~~~~~VlVI 560 (795)
...... ...|. .... .+++||||++.+... .++.|+..++.. ....+++||
T Consensus 91 ~~~~~~~~~~~~--~~~g~l~~~vl~iDEi~~~~~~--------------~~~~Ll~~l~~~~~~~~g~~~~~~~~~~vi 154 (331)
T 2r44_A 91 TMIYNQHKGNFE--VKKGPVFSNFILADEVNRSPAK--------------VQSALLECMQEKQVTIGDTTYPLDNPFLVL 154 (331)
T ss_dssp EEEEETTTTEEE--EEECTTCSSEEEEETGGGSCHH--------------HHHHHHHHHHHSEEEETTEEEECCSSCEEE
T ss_pred ceeecCCCCceE--eccCcccccEEEEEccccCCHH--------------HHHHHHHHHhcCceeeCCEEEECCCCEEEE
Confidence 110000 00000 0111 379999999987543 556666666532 123467888
Q ss_pred eccCCCC-----CCCccccCCCcccceecCCCCCHHHHHHHHHHHHccCCC-----------------------CChhhH
Q 003795 561 ASTNRPD-----ILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPM-----------------------ADDVDY 612 (795)
Q Consensus 561 atTN~~d-----~LdpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~~~-----------------------~~d~dl 612 (795)
+|+|..+ .+++++++ ||+..+.++.|+.+++.+|++.++..... .++..+
T Consensus 155 at~np~~~~~~~~l~~~l~~--Rf~~~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~ 232 (331)
T 2r44_A 155 ATQNPVEQEGTYPLPEAQVD--RFMMKIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRNEINKVTISESLE 232 (331)
T ss_dssp EEECTTCCSCCCCCCHHHHT--TSSEEEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHHHHHTCBCCHHHH
T ss_pred EecCCCcccCcccCCHHHHh--heeEEEEcCCCCHHHHHHHHHhccccCcchhccccCCHHHHHHHHHHhccCCCCHHHH
Confidence 8888654 38999999 99988999999999999999988764311 111112
Q ss_pred HHHHhh-------------------CCCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHH
Q 003795 613 LAVASM-------------------TDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEE 659 (795)
Q Consensus 613 ~~LA~~-------------------t~G~sgadL~~lv~~A~~~A~~~~~~~It~edl~~Al~~~~ 659 (795)
..++.. ..|.|.+.+..+++.|...|...++..|+.+|+.+++....
T Consensus 233 ~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~g~~~v~~~dv~~~~~~vl 298 (331)
T 2r44_A 233 KYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFNNRDYVLPEDIKEVAYDIL 298 (331)
T ss_dssp HHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh
Confidence 333221 12568999999999999899889999999999999987543
No 49
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.55 E-value=2e-14 Score=156.10 Aligned_cols=215 Identities=19% Similarity=0.233 Sum_probs=135.4
Q ss_pred ccccccCccCchHHHHHHHHHHHhccccccccccCcccCCceEEECCCCCchhHHHHHhhhhccc-------c-------
Q 003795 413 VDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGV-------N------- 478 (795)
Q Consensus 413 ~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el~~-------~------- 478 (795)
....|+++.|.+..+..+.... +. ..+++++|+||||||||++|++++..++. +
T Consensus 19 ~~~~f~~i~G~~~~~~~l~~~~--~~----------~~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~ 86 (350)
T 1g8p_A 19 PVFPFSAIVGQEDMKLALLLTA--VD----------PGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVE 86 (350)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHH--HC----------GGGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSGG
T ss_pred CCCCchhccChHHHHHHHHHHh--hC----------CCCceEEEECCCCccHHHHHHHHHHhCccccccccccccccccc
Confidence 4567888888877543322111 11 11235999999999999999999998753 1
Q ss_pred -------------------EEEeeccceehhhhccchhhHHhHHHHH---------HhcCCceeEhHHHHHHhhhccCCC
Q 003795 479 -------------------FFSISASQFVEIYVGVGASRVRSLYQEA---------KDNAPSVVFIDELDAVGRERGLIK 530 (795)
Q Consensus 479 -------------------~~~is~se~~~~~~g~~~~~l~~lf~~a---------r~~~p~Il~IDEID~l~~~r~~~~ 530 (795)
++.+..+.......|.. .+...+... ....++++||||++.+...
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~--~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~~----- 159 (350)
T 1g8p_A 87 MIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGAL--DIERAISKGEKAFEPGLLARANRGYLYIDECNLLEDH----- 159 (350)
T ss_dssp GSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEE--CHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCHH-----
T ss_pred cccchhhhhccccccCCCcccccCCCcchhhheeec--hhhhhhcCCceeecCceeeecCCCEEEEeChhhCCHH-----
Confidence 11111110000111110 001111111 1123679999999988554
Q ss_pred CCCcchHHHHHHHHHHhhhcc----c-------CCCcEEEEeccCCCC-CCCccccCCCcccceecCCCC-CHHHHHHHH
Q 003795 531 GSGGQERDATLNQLLVCLDGF----E-------GRGNVITIASTNRPD-ILDPALVRPGRFDRKIFIPKP-GLIGRMEIL 597 (795)
Q Consensus 531 ~Sgge~~r~~l~~LL~~ld~~----~-------~~~~VlVIatTN~~d-~LdpaLlrpgRFd~~I~~~~P-d~~eR~~Il 597 (795)
.++.|+..++.. . ...++++|++||..+ .++++|++ ||+..+.+++| +.+++.+|+
T Consensus 160 ---------~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~--R~~~~~~l~~~~~~~~~~~il 228 (350)
T 1g8p_A 160 ---------IVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLD--RFGLSVEVLSPRDVETRVEVI 228 (350)
T ss_dssp ---------HHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHT--TCSEEEECCCCCSHHHHHHHH
T ss_pred ---------HHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHh--hcceEEEcCCCCcHHHHHHHH
Confidence 556666655531 1 123789999999755 89999999 99988999998 677787888
Q ss_pred HHHHc-------------------------------cCCCCChhhHHHHHhhCC---CCcHHHHHHHHHHHHHHHHHcCC
Q 003795 598 KVHAR-------------------------------KKPMADDVDYLAVASMTD---GMVGAELANIVEVAAINMMRDGR 643 (795)
Q Consensus 598 ~~~l~-------------------------------~~~~~~d~dl~~LA~~t~---G~sgadL~~lv~~A~~~A~~~~~ 643 (795)
+.++. ...+ ++..+..++.... +.+.+.+.++++.|...|...++
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-s~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~~ 307 (350)
T 1g8p_A 229 RRRDTYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEA-PNTALYDCAALCIALGSDGLRGELTLLRSARALAALEGA 307 (350)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBC-CHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHhcccCchhhccccccchHHHHHHHHHHHHhCCCCCC-CHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCC
Confidence 66321 1122 2223444444333 23679999999999988988888
Q ss_pred CccCHHHHHHHHHHH
Q 003795 644 TEITTDDLLQAAQIE 658 (795)
Q Consensus 644 ~~It~edl~~Al~~~ 658 (795)
..|+.+|+..|+...
T Consensus 308 ~~v~~~~v~~a~~~~ 322 (350)
T 1g8p_A 308 TAVGRDHLKRVATMA 322 (350)
T ss_dssp SBCCHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHH
Confidence 889999999998844
No 50
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.55 E-value=6.6e-14 Score=141.63 Aligned_cols=202 Identities=20% Similarity=0.268 Sum_probs=139.9
Q ss_pred ccccccCccCchHHHHHHHHHHHhccccccccccCcccCCceEEECCCCCchhHHHHHhhhhccccE-------------
Q 003795 413 VDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNF------------- 479 (795)
Q Consensus 413 ~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el~~~~------------- 479 (795)
.+..|.+..|....+..+...+..- ..+..++|+||+|+|||++++.++..+....
T Consensus 18 ~p~~~~~~~g~~~~~~~l~~~l~~~-----------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (250)
T 1njg_A 18 RPQTFADVVGQEHVLTALANGLSLG-----------RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNC 86 (250)
T ss_dssp CCCSGGGCCSCHHHHHHHHHHHHHT-----------CCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHH
T ss_pred CCccHHHHhCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHH
Confidence 4456777888887777666655421 1234589999999999999999998764321
Q ss_pred -----------EEeeccceehhhhccchhhHHhHHHHHH----hcCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHH
Q 003795 480 -----------FSISASQFVEIYVGVGASRVRSLYQEAK----DNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQL 544 (795)
Q Consensus 480 -----------~~is~se~~~~~~g~~~~~l~~lf~~ar----~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~L 544 (795)
+.++... ......+..+++.+. ...+.+++|||++.+... .++.|
T Consensus 87 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~--------------~~~~l 146 (250)
T 1njg_A 87 REIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRH--------------SFNAL 146 (250)
T ss_dssp HHHHTTCCSSEEEEETTC------GGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHH--------------HHHHH
T ss_pred HHHhccCCcceEEecCcc------cccHHHHHHHHHHhhhchhcCCceEEEEECcccccHH--------------HHHHH
Confidence 1111110 011122334444332 224679999999887433 56677
Q ss_pred HHhhhcccCCCcEEEEeccCCCCCCCccccCCCcccceecCCCCCHHHHHHHHHHHHccCCCC-ChhhHHHHHhhCCCCc
Q 003795 545 LVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMV 623 (795)
Q Consensus 545 L~~ld~~~~~~~VlVIatTN~~d~LdpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~~~~-~d~dl~~LA~~t~G~s 623 (795)
+..++. ...++.+|++||.+..+++++.+ |+ ..+.+++|+.++..+++..++...... ++..+..++..+.| +
T Consensus 147 ~~~l~~--~~~~~~~i~~t~~~~~~~~~l~~--r~-~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~ 220 (250)
T 1njg_A 147 LKTLEE--PPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG-S 220 (250)
T ss_dssp HHHHHS--CCTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTT-C
T ss_pred HHHHhc--CCCceEEEEEeCChHhCCHHHHH--Hh-hhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCC-C
Confidence 777763 34578889999998899999988 65 589999999999999999888654432 33456778888876 7
Q ss_pred HHHHHHHHHHHHHHHHHcCCCccCHHHHHHHH
Q 003795 624 GAELANIVEVAAINMMRDGRTEITTDDLLQAA 655 (795)
Q Consensus 624 gadL~~lv~~A~~~A~~~~~~~It~edl~~Al 655 (795)
++.+.++++.|.. .+...|+.+++.+++
T Consensus 221 ~~~~~~~~~~~~~----~~~~~i~~~~v~~~~ 248 (250)
T 1njg_A 221 LRDALSLTDQAIA----SGDGQVSTQAVSAML 248 (250)
T ss_dssp HHHHHHHHHHHHT----TTTSSBCHHHHHHHS
T ss_pred HHHHHHHHHHHHh----ccCceecHHHHHHHh
Confidence 8888888887753 334579999998874
No 51
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.54 E-value=8.2e-15 Score=166.15 Aligned_cols=204 Identities=22% Similarity=0.297 Sum_probs=143.8
Q ss_pred CccccccCccCchHHH---HHHHHHHHhccccccccccCcccCCceEEECCCCCchhHHHHHhhhhccccEEEeecccee
Q 003795 412 GVDVKFSDVAGLGKIR---LELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFV 488 (795)
Q Consensus 412 ~~~~~f~~~~gl~~~~---~~l~~lv~~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~se~~ 488 (795)
-.+..|+++.|....+ ..+...+..- . ..+++|+||||||||+++++|++.++.+++.+++...
T Consensus 20 ~rP~~l~~ivGq~~~~~~~~~L~~~i~~~-----------~-~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~~- 86 (447)
T 3pvs_A 20 MRPENLAQYIGQQHLLAAGKPLPRAIEAG-----------H-LHSMILWGPPGTGKTTLAEVIARYANADVERISAVTS- 86 (447)
T ss_dssp TCCCSTTTCCSCHHHHSTTSHHHHHHHHT-----------C-CCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTTC-
T ss_pred hCCCCHHHhCCcHHHHhchHHHHHHHHcC-----------C-CcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEeccC-
Confidence 3456788888988777 4444444321 0 1458999999999999999999999999999886532
Q ss_pred hhhhccchhhHHhHHHHHHh----cCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcccCCCcEEEEecc-
Q 003795 489 EIYVGVGASRVRSLYQEAKD----NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIAST- 563 (795)
Q Consensus 489 ~~~~g~~~~~l~~lf~~ar~----~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVIatT- 563 (795)
+...++.++..+.. ..++++|||||+.+... .++.|+..++. +.+++|++|
T Consensus 87 ------~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~--------------~q~~LL~~le~----~~v~lI~att 142 (447)
T 3pvs_A 87 ------GVKEIREAIERARQNRNAGRRTILFVDEVHRFNKS--------------QQDAFLPHIED----GTITFIGATT 142 (447)
T ss_dssp ------CHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC--------------------CCHHHHHT----TSCEEEEEES
T ss_pred ------CHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHH--------------HHHHHHHHHhc----CceEEEecCC
Confidence 22344555555442 45789999999987543 45566666663 456777655
Q ss_pred -CCCCCCCccccCCCcccceecCCCCCHHHHHHHHHHHHccCC-------C-CChhhHHHHHhhCCCCcHHHHHHHHHHH
Q 003795 564 -NRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKP-------M-ADDVDYLAVASMTDGMVGAELANIVEVA 634 (795)
Q Consensus 564 -N~~d~LdpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~~-------~-~~d~dl~~LA~~t~G~sgadL~~lv~~A 634 (795)
|....++++|++ |+. ++.|++|+.+++..+++..+.... . .++..+..++..+.| +.+.+.++++.+
T Consensus 143 ~n~~~~l~~aL~s--R~~-v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~G-d~R~lln~Le~a 218 (447)
T 3pvs_A 143 ENPSFELNSALLS--RAR-VYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNG-DARRALNTLEMM 218 (447)
T ss_dssp SCGGGSSCHHHHT--TEE-EEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCS-CHHHHHHHHHHH
T ss_pred CCcccccCHHHhC--cee-EEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCC-CHHHHHHHHHHH
Confidence 555689999999 876 778999999999999999887521 1 233446778888654 667777888888
Q ss_pred HHHHHHc--CCCccCHHHHHHHHH
Q 003795 635 AINMMRD--GRTEITTDDLLQAAQ 656 (795)
Q Consensus 635 ~~~A~~~--~~~~It~edl~~Al~ 656 (795)
...+... +...||.+++.+++.
T Consensus 219 ~~~a~~~~~~~~~It~e~v~~~l~ 242 (447)
T 3pvs_A 219 ADMAEVDDSGKRVLKPELLTEIAG 242 (447)
T ss_dssp HHHSCBCTTSCEECCHHHHHHHHT
T ss_pred HHhcccccCCCCccCHHHHHHHHh
Confidence 7665323 446799999999876
No 52
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.54 E-value=1.8e-14 Score=153.95 Aligned_cols=200 Identities=19% Similarity=0.263 Sum_probs=136.4
Q ss_pred CccCchHHHHHHHHHHHhccccccccccCcccC-CceEEECCCCCchhHHHHHhhhhc---cccEEEeeccceehh----
Q 003795 419 DVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIP-GGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEI---- 490 (795)
Q Consensus 419 ~~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~-~giLL~GPpGtGKTtLakaLA~el---~~~~~~is~se~~~~---- 490 (795)
.+.|....+..+...+....... . ....| ..++|+||||||||++|++|++.+ +.+++.++++.+...
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~--~--~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGL--K--DPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVS 93 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTC--S--CTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHHH
T ss_pred hcCCHHHHHHHHHHHHHHHhcCC--C--CCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccHH
Confidence 35577777777766665432100 0 01112 349999999999999999999987 567899998876542
Q ss_pred -hhccchh-----hHHhHHHHHHhcCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhccc---------CCC
Q 003795 491 -YVGVGAS-----RVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE---------GRG 555 (795)
Q Consensus 491 -~~g~~~~-----~l~~lf~~ar~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~---------~~~ 555 (795)
.+|.... ....+.......+++++||||++.+... +++.|+..++... ...
T Consensus 94 ~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~~~--------------~~~~Ll~~le~~~~~~~~~~~~~~~ 159 (311)
T 4fcw_A 94 RLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAHPD--------------VFNILLQMLDDGRLTDSHGRTVDFR 159 (311)
T ss_dssp HHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGSCHH--------------HHHHHHHHHHHSEEECTTSCEEECT
T ss_pred HhcCCCCccccccccchHHHHHHhCCCeEEEEeChhhcCHH--------------HHHHHHHHHhcCEEEcCCCCEEECC
Confidence 2221110 0123444555566689999999988554 6777777776422 124
Q ss_pred cEEEEeccCC--------------------------CCCCCccccCCCcccceecCCCCCHHHHHHHHHHHHccC-----
Q 003795 556 NVITIASTNR--------------------------PDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKK----- 604 (795)
Q Consensus 556 ~VlVIatTN~--------------------------~d~LdpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~----- 604 (795)
++++|+|||. ...++|+|++ ||+..+.+++|+.+++..|++.++...
T Consensus 160 ~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~--R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~ 237 (311)
T 4fcw_A 160 NTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQMSYLRARLA 237 (311)
T ss_dssp TEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHTHHHHHHHH
T ss_pred CcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHh--cCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 7889999998 4468889988 999999999999999999999877542
Q ss_pred --CC---CChhhHHHHHhhCC--CCcHHHHHHHHHHHHHHH
Q 003795 605 --PM---ADDVDYLAVASMTD--GMVGAELANIVEVAAINM 638 (795)
Q Consensus 605 --~~---~~d~dl~~LA~~t~--G~sgadL~~lv~~A~~~A 638 (795)
.. .++..+..++.... ..+.++|.++++.++..+
T Consensus 238 ~~~~~~~~~~~~~~~l~~~~~~~~gn~R~L~~~i~~~~~~~ 278 (311)
T 4fcw_A 238 EKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETP 278 (311)
T ss_dssp TTTCEEEECHHHHHHHHHHSCBTTTBTTTHHHHHHHHTHHH
T ss_pred hCCcEEEeCHHHHHHHHHhCCCccCCchhHHHHHHHHHHHH
Confidence 11 12334566666655 567888999888777544
No 53
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.52 E-value=2.4e-14 Score=154.52 Aligned_cols=203 Identities=18% Similarity=0.194 Sum_probs=136.1
Q ss_pred ccCccccccCccCchHHHHHHHHHHHhccccccccccCcccCCceEEECCCCCchhHHHHHhhhhccccEEEeeccceeh
Q 003795 410 ERGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVE 489 (795)
Q Consensus 410 ~~~~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~se~~~ 489 (795)
++..+..|+++.|.+..+..+.+.+.. ...|..++++||||||||++++++++.++.+++.++++...
T Consensus 18 ~k~rP~~~~~ivg~~~~~~~l~~~l~~-----------~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~~- 85 (324)
T 3u61_B 18 QKYRPSTIDECILPAFDKETFKSITSK-----------GKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCK- 85 (324)
T ss_dssp HHSCCCSTTTSCCCHHHHHHHHHHHHT-----------TCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTCC-
T ss_pred HhhCCCCHHHHhCcHHHHHHHHHHHHc-----------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccccC-
Confidence 444567889999999888777766651 23445588889999999999999999999999999987632
Q ss_pred hhhccchhhHHhHHHHHHhc-----CCceeEhHHHHHHh-hhccCCCCCCcchHHHHHHHHHHhhhcccCCCcEEEEecc
Q 003795 490 IYVGVGASRVRSLYQEAKDN-----APSVVFIDELDAVG-RERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIAST 563 (795)
Q Consensus 490 ~~~g~~~~~l~~lf~~ar~~-----~p~Il~IDEID~l~-~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVIatT 563 (795)
...++..+...... .+++++|||+|.+. .. ..+.|+..++.. ..++.+|++|
T Consensus 86 ------~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~~~--------------~~~~L~~~le~~--~~~~~iI~~~ 143 (324)
T 3u61_B 86 ------IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGLAE--------------SQRHLRSFMEAY--SSNCSIIITA 143 (324)
T ss_dssp ------HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGGHH--------------HHHHHHHHHHHH--GGGCEEEEEE
T ss_pred ------HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCcHH--------------HHHHHHHHHHhC--CCCcEEEEEe
Confidence 22334444433322 46799999999885 32 456666666632 3567888999
Q ss_pred CCCCCCCccccCCCcccceecCCCCCHHHHHHHHHHHH-------ccCCC-CCh-hhHHHHHhhCCCCcHHHHHHHHHHH
Q 003795 564 NRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHA-------RKKPM-ADD-VDYLAVASMTDGMVGAELANIVEVA 634 (795)
Q Consensus 564 N~~d~LdpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l-------~~~~~-~~d-~dl~~LA~~t~G~sgadL~~lv~~A 634 (795)
|.+..+++++++ ||. .+.|++|+.++|.+|++..+ ..... .++ ..+..++..+.|..+. +.+.+..+
T Consensus 144 n~~~~l~~~l~s--R~~-~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gd~R~-a~~~L~~~ 219 (324)
T 3u61_B 144 NNIDGIIKPLQS--RCR-VITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPDFRK-TIGELDSY 219 (324)
T ss_dssp SSGGGSCTTHHH--HSE-EEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCSCTTH-HHHHHHHH
T ss_pred CCccccCHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCCCHHH-HHHHHHHH
Confidence 999999999999 885 79999999999877655432 22122 223 4577788887765444 33444433
Q ss_pred HHHHHHcCCCccCHHHHHHHHH
Q 003795 635 AINMMRDGRTEITTDDLLQAAQ 656 (795)
Q Consensus 635 ~~~A~~~~~~~It~edl~~Al~ 656 (795)
+ ....|+.+++..++.
T Consensus 220 ~------~~~~i~~~~v~~~~~ 235 (324)
T 3u61_B 220 S------SKGVLDAGILSLVTN 235 (324)
T ss_dssp G------GGTCBCC--------
T ss_pred h------ccCCCCHHHHHHHhC
Confidence 3 233588888887654
No 54
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.52 E-value=4.3e-14 Score=144.21 Aligned_cols=180 Identities=16% Similarity=0.130 Sum_probs=124.3
Q ss_pred CCceEEECCCCCchhHHHHHhhhhcc---ccEEEeeccceehhhhccchhhHHhHHHHHHhcCCceeEhHHHHHHhhhcc
Q 003795 451 PGGILLCGPPGVGKTLLAKAVAGEAG---VNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERG 527 (795)
Q Consensus 451 ~~giLL~GPpGtGKTtLakaLA~el~---~~~~~is~se~~~~~~g~~~~~l~~lf~~ar~~~p~Il~IDEID~l~~~r~ 527 (795)
+.+++|+||||||||+|+++++..+. .++..++++++...+. . .+.. ...+++++|||++.+....
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~~~~----~----~~~~--~~~~~vliiDe~~~~~~~~- 120 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHASIST----A----LLEG--LEQFDLICIDDVDAVAGHP- 120 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGGGSCG----G----GGTT--GGGSSEEEEETGGGGTTCH-
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHH----H----HHHh--ccCCCEEEEeccccccCCH-
Confidence 35699999999999999999998774 5677888776544321 1 1111 1346799999998875321
Q ss_pred CCCCCCcchHHHHHHHHHHhhhcccCCCcE-EEEeccCCCC---CCCccccCCCccc--ceecCCCCCHHHHHHHHHHHH
Q 003795 528 LIKGSGGQERDATLNQLLVCLDGFEGRGNV-ITIASTNRPD---ILDPALVRPGRFD--RKIFIPKPGLIGRMEILKVHA 601 (795)
Q Consensus 528 ~~~~Sgge~~r~~l~~LL~~ld~~~~~~~V-lVIatTN~~d---~LdpaLlrpgRFd--~~I~~~~Pd~~eR~~Il~~~l 601 (795)
. ....|+..++.......+ +|+++++.++ .+++.+.+ ||. ..+.+++|+.+++.+++..++
T Consensus 121 --------~---~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~--r~~~~~~i~l~~~~~~~~~~~l~~~~ 187 (242)
T 3bos_A 121 --------L---WEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDLVS--RMHWGLTYQLQPMMDDEKLAALQRRA 187 (242)
T ss_dssp --------H---HHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHHHH--HHHHSEEEECCCCCGGGHHHHHHHHH
T ss_pred --------H---HHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhhhh--HhhcCceEEeCCCCHHHHHHHHHHHH
Confidence 0 133344444433333344 5555554443 45578887 775 899999999999999999888
Q ss_pred ccCCCC-ChhhHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Q 003795 602 RKKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQ 656 (795)
Q Consensus 602 ~~~~~~-~d~dl~~LA~~t~G~sgadL~~lv~~A~~~A~~~~~~~It~edl~~Al~ 656 (795)
...... ++..+..++..+.| +.+++.++++.+...+...+ ..||.+++..++.
T Consensus 188 ~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~~~a~~~~-~~It~~~v~~~l~ 241 (242)
T 3bos_A 188 AMRGLQLPEDVGRFLLNRMAR-DLRTLFDVLDRLDKASMVHQ-RKLTIPFVKEMLR 241 (242)
T ss_dssp HHTTCCCCHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHHHHT-CCCCHHHHHHHHT
T ss_pred HHcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHHhC-CCCcHHHHHHHhh
Confidence 754432 33446778888765 78899999999988775555 4599999998863
No 55
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.49 E-value=8.1e-14 Score=153.98 Aligned_cols=202 Identities=23% Similarity=0.286 Sum_probs=124.8
Q ss_pred CCceEEECCCCCchhHHHHHhhhhccccEEEeecccee-hhhhccch-hhHHhHHHHH----HhcCCceeEhHHHHHHhh
Q 003795 451 PGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFV-EIYVGVGA-SRVRSLYQEA----KDNAPSVVFIDELDAVGR 524 (795)
Q Consensus 451 ~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~se~~-~~~~g~~~-~~l~~lf~~a----r~~~p~Il~IDEID~l~~ 524 (795)
+.+++|+||||||||++|++||..++.+++.++++.+. ..|+|... ..+..++... ....++++||||++.+..
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~ 151 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISR 151 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhCCCEEEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhh
Confidence 45699999999999999999999999999999998865 34555542 2334444432 234678999999999876
Q ss_pred hccCCCCCCcchHHHHHHHHHHhhhcc-------------------cCCCcEEEEeccCCC-------------------
Q 003795 525 ERGLIKGSGGQERDATLNQLLVCLDGF-------------------EGRGNVITIASTNRP------------------- 566 (795)
Q Consensus 525 ~r~~~~~Sgge~~r~~l~~LL~~ld~~-------------------~~~~~VlVIatTN~~------------------- 566 (795)
.+.......+.....+++.|+..|++. ....++++|++||..
T Consensus 152 ~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~ 231 (376)
T 1um8_A 152 LSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQ 231 (376)
T ss_dssp ------------CHHHHHHHHHHHHCCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCC
T ss_pred hcCCCceecccchHHHHHHHHHHhhccceecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCc
Confidence 532211111112223677788777743 123567888877621
Q ss_pred ----------------------CCCCccccCCCcccceecCCCCCHHHHHHHHHH----H-------HccCCC---CChh
Q 003795 567 ----------------------DILDPALVRPGRFDRKIFIPKPGLIGRMEILKV----H-------ARKKPM---ADDV 610 (795)
Q Consensus 567 ----------------------d~LdpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~----~-------l~~~~~---~~d~ 610 (795)
..+.|+|++ ||+.++.|++++.++...|+.. . +..... .++.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~l~~~~~~p~l~~--R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (376)
T 1um8_A 232 EKMSKKEQEAILHLVQTHDLVTYGLIPELIG--RLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEE 309 (376)
T ss_dssp SSCCTTTTTTSGGGCCHHHHHHTTCCHHHHT--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHH
T ss_pred hhhhccchhHHHhhcCHHHHhhcCCChHHhc--CCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHH
Confidence 124567777 8988999999999999998862 1 111111 1223
Q ss_pred hHHHHHhhCC--CCcHHHHHHHHHHHHHHHHHcCC------CccCHHHHHHH
Q 003795 611 DYLAVASMTD--GMVGAELANIVEVAAINMMRDGR------TEITTDDLLQA 654 (795)
Q Consensus 611 dl~~LA~~t~--G~sgadL~~lv~~A~~~A~~~~~------~~It~edl~~A 654 (795)
.+..|+.... ....+.|.+++..++..+..+.. ..|+.+++..+
T Consensus 310 a~~~l~~~~~~~~~~~R~L~~~le~~~~~~~~~~~~~~~~~~~i~~~~v~~~ 361 (376)
T 1um8_A 310 AIKEIAQLALERKTGARGLRAIIEDFCLDIMFDLPKLKGSEVRITKDCVLKQ 361 (376)
T ss_dssp HHHHHHHHHHHTTCTGGGHHHHHHHHHHHHHHTGGGGTTSEEEECHHHHTTS
T ss_pred HHHHHHHHhcccccCcHHHHHHHHHHHHHHHhhccCCCCCEEEEeHHHhcCC
Confidence 3555665532 35678999999888876655321 25888888764
No 56
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.49 E-value=3e-13 Score=148.53 Aligned_cols=211 Identities=18% Similarity=0.203 Sum_probs=144.5
Q ss_pred cCccCchHHHHHHHHHHHhccccccccccCcccCCceEEECCCCCchhHHHHHhhhhc-----------cccEEEeeccc
Q 003795 418 SDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEA-----------GVNFFSISASQ 486 (795)
Q Consensus 418 ~~~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el-----------~~~~~~is~se 486 (795)
++..|.++.+..+...+..... ...+++++|+||+|||||+++++++..+ +.+++.+++..
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~--------~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~ 91 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVK--------NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCRE 91 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHT--------TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHc--------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECcc
Confidence 5677777777777766654321 1234569999999999999999999987 78889998765
Q ss_pred ee-hh----------h-------hccchhh-HHhHHHHHHhcCCceeEhHHHHHHhhhccCCCCCCcchHHHH-HHHHHH
Q 003795 487 FV-EI----------Y-------VGVGASR-VRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDAT-LNQLLV 546 (795)
Q Consensus 487 ~~-~~----------~-------~g~~~~~-l~~lf~~ar~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~-l~~LL~ 546 (795)
.. .. . .+..... +..++..+....+ +++|||+|.+..... ... +..|+.
T Consensus 92 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~-vlilDEi~~l~~~~~----------~~~~l~~l~~ 160 (384)
T 2qby_B 92 VGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRA-IIYLDEVDTLVKRRG----------GDIVLYQLLR 160 (384)
T ss_dssp HCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCE-EEEEETTHHHHHSTT----------SHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCC-EEEEECHHHhccCCC----------CceeHHHHhc
Confidence 43 11 0 0111112 2334444433434 999999999865310 013 444443
Q ss_pred hhhcccCCCcEEEEeccCCC---CCCCccccCCCcccceecCCCCCHHHHHHHHHHHHcc----CCCCChhhHHHHHhhC
Q 003795 547 CLDGFEGRGNVITIASTNRP---DILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARK----KPMADDVDYLAVASMT 619 (795)
Q Consensus 547 ~ld~~~~~~~VlVIatTN~~---d~LdpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~----~~~~~d~dl~~LA~~t 619 (795)
.. .++.||++||.+ +.+++.+.+ ||...+.|++|+.++..+|+..++.. ..+. +..+..++..+
T Consensus 161 ~~------~~~~iI~~t~~~~~~~~l~~~l~s--r~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~-~~~~~~i~~~~ 231 (384)
T 2qby_B 161 SD------ANISVIMISNDINVRDYMEPRVLS--SLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYD-DEILSYIAAIS 231 (384)
T ss_dssp SS------SCEEEEEECSSTTTTTTSCHHHHH--TCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCC-SHHHHHHHHHH
T ss_pred CC------cceEEEEEECCCchHhhhCHHHHh--cCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcC-HHHHHHHHHHH
Confidence 22 678999999887 678899888 88779999999999999999988763 2232 33456677666
Q ss_pred CC--CcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHH
Q 003795 620 DG--MVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIE 658 (795)
Q Consensus 620 ~G--~sgadL~~lv~~A~~~A~~~~~~~It~edl~~Al~~~ 658 (795)
.+ -..+.+.++++.|...|. +...|+.+++..++...
T Consensus 232 ~~~~G~~r~a~~~l~~a~~~a~--~~~~i~~~~v~~~~~~~ 270 (384)
T 2qby_B 232 AKEHGDARKAVNLLFRAAQLAS--GGGIIRKEHVDKAIVDY 270 (384)
T ss_dssp HTTCCCHHHHHHHHHHHHHHTT--SSSCCCHHHHHHHHHHH
T ss_pred HhccCCHHHHHHHHHHHHHHhc--CCCccCHHHHHHHHHHH
Confidence 51 245566688888876665 56789999999998743
No 57
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.49 E-value=1e-12 Score=143.29 Aligned_cols=212 Identities=20% Similarity=0.267 Sum_probs=145.3
Q ss_pred ccccCccCchHHHHHHHHHHHhccccccccccCcccCCceEEECCCCCchhHHHHHhhhhccccEEEeeccceehhhhcc
Q 003795 415 VKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGV 494 (795)
Q Consensus 415 ~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~se~~~~~~g~ 494 (795)
..|+...|....+..+...+..-..+ -..+..++|+||||+|||||+++||+.++.++...++..+..
T Consensus 22 ~~l~~~~g~~~~~~~l~~~i~~~~~~-------~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~----- 89 (334)
T 1in4_A 22 KSLDEFIGQENVKKKLSLALEAAKMR-------GEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK----- 89 (334)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHHHHHH-------TCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCS-----
T ss_pred ccHHHccCcHHHHHHHHHHHHHHHhc-------CCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcC-----
Confidence 35666667666665555444321100 123355999999999999999999999988776665443221
Q ss_pred chhhHHhHHHHHHhcCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhccc----------------CCCcEE
Q 003795 495 GASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE----------------GRGNVI 558 (795)
Q Consensus 495 ~~~~l~~lf~~ar~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~----------------~~~~Vl 558 (795)
...+..++.. ...++|++|||++.+... ..+.|+..++... .-..+.
T Consensus 90 -~~~l~~~~~~--~~~~~v~~iDE~~~l~~~--------------~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~ 152 (334)
T 1in4_A 90 -QGDMAAILTS--LERGDVLFIDEIHRLNKA--------------VEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFT 152 (334)
T ss_dssp -HHHHHHHHHH--CCTTCEEEEETGGGCCHH--------------HHHHHHHHHHTSCCCC---------------CCCE
T ss_pred -HHHHHHHHHH--ccCCCEEEEcchhhcCHH--------------HHHHHHHHHHhcccceeeccCcccccccccCCCeE
Confidence 1222223222 234679999999877432 2233333332211 012467
Q ss_pred EEeccCCCCCCCccccCCCcccceecCCCCCHHHHHHHHHHHHccCCCC-ChhhHHHHHhhCCCCcHHHHHHHHHHHHHH
Q 003795 559 TIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAIN 637 (795)
Q Consensus 559 VIatTN~~d~LdpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~~~~-~d~dl~~LA~~t~G~sgadL~~lv~~A~~~ 637 (795)
++++||.+..+++.+++ ||...+.+++|+.+++.+|++......... ++.....++.++.| +++.+.++++.+...
T Consensus 153 li~at~~~~~Ls~~l~s--R~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G-~~R~a~~ll~~~~~~ 229 (334)
T 1in4_A 153 LVGATTRSGLLSSPLRS--RFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRG-TPRIAIRLTKRVRDM 229 (334)
T ss_dssp EEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTT-CHHHHHHHHHHHHHH
T ss_pred EEEecCCcccCCHHHHH--hcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCC-ChHHHHHHHHHHHHH
Confidence 77899999999999999 998889999999999999999877654433 33447788888876 457888999998888
Q ss_pred HHHcCCCccCHHHHHHHHHHH
Q 003795 638 MMRDGRTEITTDDLLQAAQIE 658 (795)
Q Consensus 638 A~~~~~~~It~edl~~Al~~~ 658 (795)
|...+...||.+++.+++...
T Consensus 230 a~~~~~~~It~~~v~~al~~~ 250 (334)
T 1in4_A 230 LTVVKADRINTDIVLKTMEVL 250 (334)
T ss_dssp HHHHTCSSBCHHHHHHHHHHH
T ss_pred HHHcCCCCcCHHHHHHHHHHh
Confidence 877788889999999998753
No 58
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.48 E-value=5.9e-13 Score=145.39 Aligned_cols=221 Identities=20% Similarity=0.242 Sum_probs=146.0
Q ss_pred cccCccCchHHHHHHHHHHHhccccccccccCcccCCceEEECCCCCchhHHHHHhhhhc------cccEEEeeccceeh
Q 003795 416 KFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEA------GVNFFSISASQFVE 489 (795)
Q Consensus 416 ~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el------~~~~~~is~se~~~ 489 (795)
..++..|.++.+..+.+.+.... ....+..++|+||+|+|||+|++.+++.+ +..++.+++.....
T Consensus 18 ~p~~~~gr~~e~~~l~~~l~~~~--------~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~ 89 (386)
T 2qby_A 18 IPDELPHREDQIRKIASILAPLY--------REEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDT 89 (386)
T ss_dssp CCSCCTTCHHHHHHHHHSSGGGG--------GTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCS
T ss_pred CCCCCCChHHHHHHHHHHHHHHH--------cCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCC
Confidence 34556676666655544332210 01234469999999999999999999987 77888888764322
Q ss_pred hh----------------hccchhh-HHhHHHHHHhcC-CceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcc
Q 003795 490 IY----------------VGVGASR-VRSLYQEAKDNA-PSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGF 551 (795)
Q Consensus 490 ~~----------------~g~~~~~-l~~lf~~ar~~~-p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~ 551 (795)
.+ .+..... ...+++...... |.+++|||++.+..... ...+..++..++..
T Consensus 90 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~----------~~~l~~l~~~~~~~ 159 (386)
T 2qby_A 90 PYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYN----------DDILYKLSRINSEV 159 (386)
T ss_dssp HHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSC----------STHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCc----------CHHHHHHhhchhhc
Confidence 10 0111112 233444444433 88999999999864321 01566676666543
Q ss_pred cCCCcEEEEeccCCC---CCCCccccCCCccc-ceecCCCCCHHHHHHHHHHHHccC---CCCChhhHHHHHhhCC---C
Q 003795 552 EGRGNVITIASTNRP---DILDPALVRPGRFD-RKIFIPKPGLIGRMEILKVHARKK---PMADDVDYLAVASMTD---G 621 (795)
Q Consensus 552 ~~~~~VlVIatTN~~---d~LdpaLlrpgRFd-~~I~~~~Pd~~eR~~Il~~~l~~~---~~~~d~dl~~LA~~t~---G 621 (795)
...++.+|++||.+ ..+++.+.+ ||. +.+.+++++.++..+++..++... ....+..+..++..+. |
T Consensus 160 -~~~~~~~I~~~~~~~~~~~~~~~~~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G 236 (386)
T 2qby_A 160 -NKSKISFIGITNDVKFVDLLDPRVKS--SLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHG 236 (386)
T ss_dssp -CC--EEEEEEESCGGGGGGCTTHHHH--TTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTC
T ss_pred -CCCeEEEEEEECCCChHhhhCHHHhc--cCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcC
Confidence 45678888888877 467788877 665 489999999999999999876531 1222333555666655 4
Q ss_pred CcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHH
Q 003795 622 MVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIE 658 (795)
Q Consensus 622 ~sgadL~~lv~~A~~~A~~~~~~~It~edl~~Al~~~ 658 (795)
+++.+.++++.|...+...+...|+.+++..|+...
T Consensus 237 -~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~ 272 (386)
T 2qby_A 237 -DARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEI 272 (386)
T ss_dssp -CHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHH
Confidence 456666899999888887788889999999998743
No 59
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.48 E-value=2.7e-13 Score=147.13 Aligned_cols=208 Identities=17% Similarity=0.170 Sum_probs=142.4
Q ss_pred cCccccccCccCchHHHHHHHHHHHhccccccccccCcccCCceEEECCCCCchhHHHHHhhhhccc------cEEEeec
Q 003795 411 RGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGV------NFFSISA 484 (795)
Q Consensus 411 ~~~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el~~------~~~~is~ 484 (795)
+..+..|.++.|.++.+..+...+.. . . +.+++|+||||+|||++++++++.++. .++.+++
T Consensus 30 k~~p~~~~~i~g~~~~~~~l~~~l~~---~--------~-~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~ 97 (353)
T 1sxj_D 30 KYRPKNLDEVTAQDHAVTVLKKTLKS---A--------N-LPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNA 97 (353)
T ss_dssp HTCCSSTTTCCSCCTTHHHHHHHTTC---T--------T-CCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECS
T ss_pred hcCCCCHHHhhCCHHHHHHHHHHHhc---C--------C-CCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEcc
Confidence 34566788888888877665554321 1 1 123899999999999999999998643 4667776
Q ss_pred cceehhhhccchhhHHhHHHHHH----------------hcCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhh
Q 003795 485 SQFVEIYVGVGASRVRSLYQEAK----------------DNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCL 548 (795)
Q Consensus 485 se~~~~~~g~~~~~l~~lf~~ar----------------~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~l 548 (795)
++.... ..++..+.... ...+.+++|||++.+... ..+.|+..+
T Consensus 98 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~--------------~~~~Ll~~l 157 (353)
T 1sxj_D 98 SDERGI------SIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTAD--------------AQSALRRTM 157 (353)
T ss_dssp SSCCCH------HHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHH--------------HHHHHHHHH
T ss_pred ccccch------HHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCHH--------------HHHHHHHHH
Confidence 653211 11222221111 123469999999988543 456677667
Q ss_pred hcccCCCcEEEEeccCCCCCCCccccCCCcccceecCCCCCHHHHHHHHHHHHccCCC-CChhhHHHHHhhCCCCcHHHH
Q 003795 549 DGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPM-ADDVDYLAVASMTDGMVGAEL 627 (795)
Q Consensus 549 d~~~~~~~VlVIatTN~~d~LdpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~~~-~~d~dl~~LA~~t~G~sgadL 627 (795)
+.. ..++.+|.+||.++.+++++++ |+. .+.|++|+.++...++...+..... .++..+..++..+.|. .+.+
T Consensus 158 e~~--~~~~~~il~~~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~-~r~~ 231 (353)
T 1sxj_D 158 ETY--SGVTRFCLICNYVTRIIDPLAS--QCS-KFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGD-LRRG 231 (353)
T ss_dssp HHT--TTTEEEEEEESCGGGSCHHHHH--HSE-EEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSSC-HHHH
T ss_pred Hhc--CCCceEEEEeCchhhCcchhhc--cCc-eEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCC-HHHH
Confidence 643 3456677788999999999998 886 8899999999999999988765433 2344577888888764 5555
Q ss_pred HHHHHHHHHHHHHcCCC-ccCHHHHHHHHH
Q 003795 628 ANIVEVAAINMMRDGRT-EITTDDLLQAAQ 656 (795)
Q Consensus 628 ~~lv~~A~~~A~~~~~~-~It~edl~~Al~ 656 (795)
.++++.+...+.+.+.. .|+.+++..++.
T Consensus 232 ~~~l~~~~~~~~~~~~~~~It~~~v~~~~~ 261 (353)
T 1sxj_D 232 ITLLQSASKGAQYLGDGKNITSTQVEELAG 261 (353)
T ss_dssp HHHHHHTHHHHHHHCSCCCCCHHHHHHHHT
T ss_pred HHHHHHHHHhcCCCccCccccHHHHHHHhC
Confidence 57777666555444333 699999988764
No 60
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.46 E-value=4.1e-13 Score=161.69 Aligned_cols=221 Identities=21% Similarity=0.285 Sum_probs=152.0
Q ss_pred cccccCccCchHHHHHHHHHHHhccccccccccCcccCCceEEECCCCCchhHHHHHhhhhc----------cccEEEee
Q 003795 414 DVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEA----------GVNFFSIS 483 (795)
Q Consensus 414 ~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el----------~~~~~~is 483 (795)
.-.|+.+.|.+..+..+.++.. . ..+.+++|+||||||||+++++++..+ +..++.++
T Consensus 182 ~~~~d~~iGr~~~i~~l~~~l~---~---------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~ 249 (758)
T 1r6b_X 182 VGGIDPLIGREKELERAIQVLC---R---------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLD 249 (758)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHT---S---------SSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECC
T ss_pred cCCCCCccCCHHHHHHHHHHHh---c---------cCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEc
Confidence 3457777887776655444332 1 124568999999999999999999876 55677777
Q ss_pred cccee--hhhhccchhhHHhHHHHHHhcCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcccCCCcEEEEe
Q 003795 484 ASQFV--EIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIA 561 (795)
Q Consensus 484 ~se~~--~~~~g~~~~~l~~lf~~ar~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVIa 561 (795)
++.+. ..+.|.....++.+++.+....++++||||++.+.+.... +++ .....+.|. .+....++.+|+
T Consensus 250 ~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~---~~~--~~~~~~~L~----~~l~~~~~~~I~ 320 (758)
T 1r6b_X 250 IGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAA---SGG--QVDAANLIK----PLLSSGKIRVIG 320 (758)
T ss_dssp CC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCS---SSC--HHHHHHHHS----SCSSSCCCEEEE
T ss_pred HHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCC---Ccc--hHHHHHHHH----HHHhCCCeEEEE
Confidence 77665 3466777777888998888777899999999998654211 111 122333333 233456788999
Q ss_pred ccCCCC-----CCCccccCCCcccceecCCCCCHHHHHHHHHHHHcc----CC-CCChhhHHHHHhhC-----CCCcHHH
Q 003795 562 STNRPD-----ILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARK----KP-MADDVDYLAVASMT-----DGMVGAE 626 (795)
Q Consensus 562 tTN~~d-----~LdpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~----~~-~~~d~dl~~LA~~t-----~G~sgad 626 (795)
+||.++ .+|++|.+ ||+ .+.|+.|+.+++.+|++.++.. .. ...+..+..++..+ ..+.+..
T Consensus 321 at~~~~~~~~~~~d~aL~~--Rf~-~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~~i~~~~lp~~ 397 (758)
T 1r6b_X 321 STTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDK 397 (758)
T ss_dssp EECHHHHHCCCCCTTSSGG--GEE-EEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHCTTSCTTHH
T ss_pred EeCchHHhhhhhcCHHHHh--Cce-EEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhcccccCchH
Confidence 998653 47899999 998 7999999999999999876643 11 12233344555443 3456778
Q ss_pred HHHHHHHHHHHHHH----cCCCccCHHHHHHHHHHH
Q 003795 627 LANIVEVAAINMMR----DGRTEITTDDLLQAAQIE 658 (795)
Q Consensus 627 L~~lv~~A~~~A~~----~~~~~It~edl~~Al~~~ 658 (795)
+..++++|+..+.. .+...|+.+|+..++...
T Consensus 398 ~i~lld~a~~~~~~~~~~~~~~~v~~~di~~~~~~~ 433 (758)
T 1r6b_X 398 AIDVIDEAGARARLMPVSKRKKTVNVADIESVVARI 433 (758)
T ss_dssp HHHHHHHHHHHHHHSSSCCCCCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccccccCCccCHHHHHHHHHHh
Confidence 88999988866554 245679999999998743
No 61
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.45 E-value=1.2e-12 Score=143.64 Aligned_cols=218 Identities=13% Similarity=0.121 Sum_probs=149.5
Q ss_pred ccCccCchHHHHHHHHHHHhccccccccccCcccCC--ceEEECCCCCchhHHHHHhhhhc----cccEEEeeccceehh
Q 003795 417 FSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPG--GILLCGPPGVGKTLLAKAVAGEA----GVNFFSISASQFVEI 490 (795)
Q Consensus 417 f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~~--giLL~GPpGtGKTtLakaLA~el----~~~~~~is~se~~~~ 490 (795)
.+...|.++.+..+...+...... ..+. .++|+||||+|||+|++++++.+ +..++.+++......
T Consensus 16 p~~l~gr~~~~~~l~~~l~~~~~~--------~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~ 87 (389)
T 1fnn_A 16 PKRLPHREQQLQQLDILLGNWLRN--------PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNF 87 (389)
T ss_dssp CSCCTTCHHHHHHHHHHHHHHHHS--------TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcC--------CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCH
Confidence 356777777776666655532110 1223 58999999999999999999987 567888887654321
Q ss_pred ---------hh-------ccchhhH-HhHHHHHH-hcCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhccc
Q 003795 491 ---------YV-------GVGASRV-RSLYQEAK-DNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE 552 (795)
Q Consensus 491 ---------~~-------g~~~~~l-~~lf~~ar-~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~ 552 (795)
.+ +.....+ ..+..... ...|.+++|||++.+... .+..|+..++...
T Consensus 88 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~--------------~~~~L~~~~~~~~ 153 (389)
T 1fnn_A 88 TAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPD--------------ILSTFIRLGQEAD 153 (389)
T ss_dssp HHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHH--------------HHHHHHHHTTCHH
T ss_pred HHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchH--------------HHHHHHHHHHhCC
Confidence 01 1111111 12222222 244789999999887322 6667766665432
Q ss_pred C--CCcEEEEeccCCC---CCCCccccCCCcccc-eecCCCCCHHHHHHHHHHHHcc---CCCCChhhHHHHHhhCC---
Q 003795 553 G--RGNVITIASTNRP---DILDPALVRPGRFDR-KIFIPKPGLIGRMEILKVHARK---KPMADDVDYLAVASMTD--- 620 (795)
Q Consensus 553 ~--~~~VlVIatTN~~---d~LdpaLlrpgRFd~-~I~~~~Pd~~eR~~Il~~~l~~---~~~~~d~dl~~LA~~t~--- 620 (795)
. ..++.+|++||.+ +.+++.+.+ ||.. .+.|++++.++..+++...+.. ....++..+..++..+.
T Consensus 154 ~~~~~~~~iI~~~~~~~~~~~l~~~~~~--r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 231 (389)
T 1fnn_A 154 KLGAFRIALVIVGHNDAVLNNLDPSTRG--IMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQT 231 (389)
T ss_dssp HHSSCCEEEEEEESSTHHHHTSCHHHHH--HHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSS
T ss_pred CCCcCCEEEEEEECCchHHHHhCHHhhh--cCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcc
Confidence 2 2578888888887 567888877 8875 8999999999999999988764 12234445677777773
Q ss_pred -----CCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHH
Q 003795 621 -----GMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIE 658 (795)
Q Consensus 621 -----G~sgadL~~lv~~A~~~A~~~~~~~It~edl~~Al~~~ 658 (795)
+-..+.+.++++.|...|...+...|+.+++..++...
T Consensus 232 ~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~~~ 274 (389)
T 1fnn_A 232 PLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKEV 274 (389)
T ss_dssp TTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHH
T ss_pred cCCCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Confidence 23567788999999988888888889999999987743
No 62
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.45 E-value=2.4e-13 Score=156.81 Aligned_cols=224 Identities=17% Similarity=0.218 Sum_probs=141.9
Q ss_pred ccCccccccCccCchHHHHHHHHHHHhccc--cccccccCc---ccCCceEEECCCCCchhHHHHHhhhhccccEEEeec
Q 003795 410 ERGVDVKFSDVAGLGKIRLELEEIVKFFTH--GEMYRRRGV---RIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (795)
Q Consensus 410 ~~~~~~~f~~~~gl~~~~~~l~~lv~~~~~--~~~~~~~gl---~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (795)
++..+..|+++.|.+..+..+.+.+..... +..+...|. ..+++++|+||||||||++|+++|.+++.+++.+++
T Consensus 31 ekyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~ 110 (516)
T 1sxj_A 31 VKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNA 110 (516)
T ss_dssp HHTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECT
T ss_pred cccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeC
Confidence 445667899999999998888887764321 112223333 245679999999999999999999999999999999
Q ss_pred cceehhhhccch-------hhHHhHHHHH-----HhcCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhccc
Q 003795 485 SQFVEIYVGVGA-------SRVRSLYQEA-----KDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE 552 (795)
Q Consensus 485 se~~~~~~g~~~-------~~l~~lf~~a-----r~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~ 552 (795)
++.......... ..+..+|..+ ....+++++|||+|.+..... ..++.|+..++.
T Consensus 111 s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~-----------~~l~~L~~~l~~-- 177 (516)
T 1sxj_A 111 SDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDR-----------GGVGQLAQFCRK-- 177 (516)
T ss_dssp TSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTST-----------THHHHHHHHHHH--
T ss_pred CCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhH-----------HHHHHHHHHHHh--
Confidence 876554321110 0122333333 224578999999998854311 134555555552
Q ss_pred CCCcEEEEeccCCCCCCCccccCCCcccceecCCCCCHHHHHHHHHHHHccCCC-CChhhHHHHHhhCCCCcHHHHHHHH
Q 003795 553 GRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPM-ADDVDYLAVASMTDGMVGAELANIV 631 (795)
Q Consensus 553 ~~~~VlVIatTN~~d~LdpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~~~-~~d~dl~~LA~~t~G~sgadL~~lv 631 (795)
....+++|+++.....++ .+. |+...+.|++|+.+++.+++...+..... .++..+..++..+.|-. +.+.+++
T Consensus 178 ~~~~iIli~~~~~~~~l~-~l~---~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~~l~~la~~s~Gdi-R~~i~~L 252 (516)
T 1sxj_A 178 TSTPLILICNERNLPKMR-PFD---RVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRGDI-RQVINLL 252 (516)
T ss_dssp CSSCEEEEESCTTSSTTG-GGT---TTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHTTTCH-HHHHHHH
T ss_pred cCCCEEEEEcCCCCccch-hhH---hceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcH-HHHHHHH
Confidence 334466666555444454 344 44558999999999999999876654322 23334778888876532 3333333
Q ss_pred HHHHHHHHHcCCCccCHHHHHHHHH
Q 003795 632 EVAAINMMRDGRTEITTDDLLQAAQ 656 (795)
Q Consensus 632 ~~A~~~A~~~~~~~It~edl~~Al~ 656 (795)
..+ +. +...|+.+++..++.
T Consensus 253 ~~~---~~--~~~~It~~~v~~~~~ 272 (516)
T 1sxj_A 253 STI---ST--TTKTINHENINEISK 272 (516)
T ss_dssp THH---HH--HSSCCCTTHHHHHHH
T ss_pred HHH---Hh--cCCCCchHHHHHHHH
Confidence 322 22 345688888877765
No 63
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.44 E-value=6e-13 Score=141.99 Aligned_cols=205 Identities=21% Similarity=0.203 Sum_probs=140.2
Q ss_pred cccCccccccCccCchHHHHHHHHHHHhccccccccccCcccCCceEEECCCCCchhHHHHHhhhhc-----cccEEEee
Q 003795 409 LERGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEA-----GVNFFSIS 483 (795)
Q Consensus 409 ~~~~~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el-----~~~~~~is 483 (795)
.++..+..|+++.|.+..+..+...+.. -..+ +++|+||+|+|||+++++++..+ +.+++.++
T Consensus 8 ~~k~~p~~~~~~~g~~~~~~~l~~~l~~-----------~~~~-~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~ 75 (319)
T 2chq_A 8 VEKYRPRTLDEVVGQDEVIQRLKGYVER-----------KNIP-HLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMN 75 (319)
T ss_dssp TTTTSCSSGGGSCSCHHHHHHHHTTTTT-----------TCCC-CEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEE
T ss_pred HHhcCCCCHHHHhCCHHHHHHHHHHHhC-----------CCCC-eEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEe
Confidence 3445667788888888777655543321 1222 39999999999999999999976 44577777
Q ss_pred ccceehhhhccchhhHHhHHHHHH------hcCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcccCCCcE
Q 003795 484 ASQFVEIYVGVGASRVRSLYQEAK------DNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNV 557 (795)
Q Consensus 484 ~se~~~~~~g~~~~~l~~lf~~ar------~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~V 557 (795)
+++... ...++..+.... ...+.+++|||+|.+... ..+.|+..++. ...++
T Consensus 76 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~--------------~~~~L~~~le~--~~~~~ 133 (319)
T 2chq_A 76 ASDERG------IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTAD--------------AQAALRRTMEM--YSKSC 133 (319)
T ss_dssp TTSTTC------TTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHH--------------HHHTTGGGTSS--SSSSE
T ss_pred CccccC------hHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHH--------------HHHHHHHHHHh--cCCCC
Confidence 765321 111222222222 134679999999987543 56667777763 34678
Q ss_pred EEEeccCCCCCCCccccCCCcccceecCCCCCHHHHHHHHHHHHccCCCC-ChhhHHHHHhhCCCCcHHHHHHHHHHHHH
Q 003795 558 ITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAI 636 (795)
Q Consensus 558 lVIatTN~~d~LdpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~~~~-~d~dl~~LA~~t~G~sgadL~~lv~~A~~ 636 (795)
++|++||.+..+++++.+ |+. .+.|++|+.+++..++..++...... ++..+..++..+.| +.+.+.++++.+..
T Consensus 134 ~~i~~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G-~~r~~~~~l~~~~~ 209 (319)
T 2chq_A 134 RFILSCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG-DFRKAINALQGAAA 209 (319)
T ss_dssp EEEEEESCGGGSCHHHHT--TCE-EEECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTT-CHHHHHHHHHHHHH
T ss_pred eEEEEeCChhhcchHHHh--hCe-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHH
Confidence 888999999999999998 776 89999999999999999888765443 33446677777655 44455555554432
Q ss_pred HHHHcCCCccCHHHHHHHHH
Q 003795 637 NMMRDGRTEITTDDLLQAAQ 656 (795)
Q Consensus 637 ~A~~~~~~~It~edl~~Al~ 656 (795)
....|+.+++..++.
T Consensus 210 -----~~~~i~~~~v~~~~~ 224 (319)
T 2chq_A 210 -----IGEVVDADTIYQITA 224 (319)
T ss_dssp -----SSSCBCHHHHHHHTT
T ss_pred -----cCCCCCHHHHHHHHC
Confidence 134699999887743
No 64
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.42 E-value=5.8e-14 Score=137.29 Aligned_cols=159 Identities=26% Similarity=0.425 Sum_probs=106.0
Q ss_pred cccccCccCchHHHHHHHHHHHhccccccccccCcccCCceEEECCCCCchhHHHHHhhhhc----------cccEEEee
Q 003795 414 DVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEA----------GVNFFSIS 483 (795)
Q Consensus 414 ~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el----------~~~~~~is 483 (795)
...|++..|.++.+..+.+... . ..+.+++|+||+|||||+++++++..+ +.+++.++
T Consensus 18 ~~~~~~~~g~~~~~~~l~~~l~---~---------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (195)
T 1jbk_A 18 QGKLDPVIGRDEEIRRTIQVLQ---R---------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALD 85 (195)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHT---S---------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEEC
T ss_pred hccccccccchHHHHHHHHHHh---c---------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEee
Confidence 3456777777776655544332 1 224569999999999999999999976 57778888
Q ss_pred ccceeh--hhhccchhhHHhHHHHHHh-cCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcccCCCcEEEE
Q 003795 484 ASQFVE--IYVGVGASRVRSLYQEAKD-NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITI 560 (795)
Q Consensus 484 ~se~~~--~~~g~~~~~l~~lf~~ar~-~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVI 560 (795)
++.+.. .+.+.....+..++..+.. ..+++++|||++.+...... .+... ..+.+...++ ..++.+|
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~---~~~~~---~~~~l~~~~~----~~~~~~i 155 (195)
T 1jbk_A 86 MGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKA---DGAMD---AGNMLKPALA----RGELHCV 155 (195)
T ss_dssp HHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT---------CCC---CHHHHHHHHH----TTSCCEE
T ss_pred HHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcc---cchHH---HHHHHHHhhc----cCCeEEE
Confidence 776542 2334344455666665543 45779999999998644211 11111 2222222222 3567888
Q ss_pred eccCCCC-----CCCccccCCCcccceecCCCCCHHHHHHHH
Q 003795 561 ASTNRPD-----ILDPALVRPGRFDRKIFIPKPGLIGRMEIL 597 (795)
Q Consensus 561 atTN~~d-----~LdpaLlrpgRFd~~I~~~~Pd~~eR~~Il 597 (795)
++||.++ .+++++++ ||+ .+.+++|+.+++.+|+
T Consensus 156 ~~~~~~~~~~~~~~~~~l~~--r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 156 GATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp EEECHHHHHHHTTTCHHHHT--TEE-EEECCCCCHHHHHTTC
T ss_pred EeCCHHHHHHHHhcCHHHHH--Hhc-eeecCCCCHHHHHHHh
Confidence 8888776 68999999 998 6999999999998875
No 65
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.41 E-value=4.1e-13 Score=153.09 Aligned_cols=190 Identities=23% Similarity=0.326 Sum_probs=128.0
Q ss_pred ccccccCccCchHHHHHHHHHHHhccccccccccCcccCCceEEECCCCCchhHHHHHhhhhc----------cccEEEe
Q 003795 413 VDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEA----------GVNFFSI 482 (795)
Q Consensus 413 ~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el----------~~~~~~i 482 (795)
.+-.|+.+.|.+..+..+..++.. ....+++|+||||||||+++++||..+ +.+++.+
T Consensus 175 r~~~ld~iiGr~~~i~~l~~~l~r------------~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l 242 (468)
T 3pxg_A 175 KEDSLDPVIGRSKEIQRVIEVLSR------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTL 242 (468)
T ss_dssp TSSCSCCCCCCHHHHHHHHHHHHC------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC
T ss_pred hcCCCCCccCcHHHHHHHHHHHhc------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEe
Confidence 345677888888777665555432 123458999999999999999999986 6778888
Q ss_pred eccceehhhhccchhhHHhHHHHHHhcCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcccCCCcEEEEec
Q 003795 483 SASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIAS 562 (795)
Q Consensus 483 s~se~~~~~~g~~~~~l~~lf~~ar~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVIat 562 (795)
+++ ..|.|.....++.+|..+....++|+||| +.. ...+.|+..++ .+.+.+|++
T Consensus 243 ~~~---~~~~g~~e~~~~~~~~~~~~~~~~iLfiD-----~~~-------------~a~~~L~~~L~----~g~v~vI~a 297 (468)
T 3pxg_A 243 DMG---TKYRGEFEDRLKKVMDEIRQAGNIILFID-----AAI-------------DASNILKPSLA----RGELQCIGA 297 (468)
T ss_dssp -------------CTTHHHHHHHHHTCCCCEEEEC-----C---------------------CCCTT----SSSCEEEEE
T ss_pred eCC---ccccchHHHHHHHHHHHHHhcCCeEEEEe-----Cch-------------hHHHHHHHhhc----CCCEEEEec
Confidence 877 55677777788899999988889999999 110 13444544443 567899999
Q ss_pred cCCCC-----CCCccccCCCcccceecCCCCCHHHHHHHHHHHHccC----CC-CChhhHHHHHhhCC-----CCcHHHH
Q 003795 563 TNRPD-----ILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKK----PM-ADDVDYLAVASMTD-----GMVGAEL 627 (795)
Q Consensus 563 TN~~d-----~LdpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~----~~-~~d~dl~~LA~~t~-----G~sgadL 627 (795)
||..+ .++++|++ ||. .|.|+.|+.+++..|++.++... .. .++..+..++..+. .+.+...
T Consensus 298 t~~~e~~~~~~~~~al~~--Rf~-~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~~~lp~~a 374 (468)
T 3pxg_A 298 TTLDEYRKYIEKDAALER--RFQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKA 374 (468)
T ss_dssp CCTTTTHHHHTTCSHHHH--SEE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHH
T ss_pred CCHHHHHHHhhcCHHHHH--hCc-cceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccCcCCcHH
Confidence 99887 68999999 998 59999999999999999877552 11 23333555554433 3445577
Q ss_pred HHHHHHHHHHHHHcC
Q 003795 628 ANIVEVAAINMMRDG 642 (795)
Q Consensus 628 ~~lv~~A~~~A~~~~ 642 (795)
..+++.|+..+....
T Consensus 375 i~ll~~a~~~~~~~~ 389 (468)
T 3pxg_A 375 IDLIDEAGSKVRLRS 389 (468)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcc
Confidence 788888876555443
No 66
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.40 E-value=2.9e-13 Score=146.52 Aligned_cols=138 Identities=8% Similarity=0.069 Sum_probs=99.7
Q ss_pred cCCceEEECCCCCchhHHHHHhhhhc----------cccEEEeeccceehh----------hhc------cchhhHHhHH
Q 003795 450 IPGGILLCGPPGVGKTLLAKAVAGEA----------GVNFFSISASQFVEI----------YVG------VGASRVRSLY 503 (795)
Q Consensus 450 i~~giLL~GPpGtGKTtLakaLA~el----------~~~~~~is~se~~~~----------~~g------~~~~~l~~lf 503 (795)
.+++++|+||||||||++++.++.++ ...+++++|..+.+. ..| .....+..+|
T Consensus 44 ~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f 123 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKENLCGDISLEALNFYI 123 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC--CCCCHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHH
Confidence 45679999999999999999999987 346788887665432 111 2233456667
Q ss_pred HHH--HhcCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcccCCCcEEEEeccCCCCC----CCccccCCC
Q 003795 504 QEA--KDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDI----LDPALVRPG 577 (795)
Q Consensus 504 ~~a--r~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVIatTN~~d~----LdpaLlrpg 577 (795)
... ....+.|++|||+|.+.. ..++..|+.... ...++++||+.+|..+. +++++.+
T Consensus 124 ~~~~~~~~~~~ii~lDE~d~l~~-------------q~~L~~l~~~~~--~~~s~~~vI~i~n~~d~~~~~L~~~v~S-- 186 (318)
T 3te6_A 124 TNVPKAKKRKTLILIQNPENLLS-------------EKILQYFEKWIS--SKNSKLSIICVGGHNVTIREQINIMPSL-- 186 (318)
T ss_dssp HHSCGGGSCEEEEEEECCSSSCC-------------THHHHHHHHHHH--CSSCCEEEEEECCSSCCCHHHHHTCHHH--
T ss_pred HHhhhccCCceEEEEecHHHhhc-------------chHHHHHHhccc--ccCCcEEEEEEecCcccchhhcchhhhc--
Confidence 654 345578999999998861 125555655433 35678999999998864 4555566
Q ss_pred ccc-ceecCCCCCHHHHHHHHHHHHccC
Q 003795 578 RFD-RKIFIPKPGLIGRMEILKVHARKK 604 (795)
Q Consensus 578 RFd-~~I~~~~Pd~~eR~~Il~~~l~~~ 604 (795)
||. ..|.|++++.++..+|++..+...
T Consensus 187 R~~~~~i~F~pYt~~el~~Il~~Rl~~~ 214 (318)
T 3te6_A 187 KAHFTEIKLNKVDKNELQQMIITRLKSL 214 (318)
T ss_dssp HTTEEEEECCCCCHHHHHHHHHHHHHHH
T ss_pred cCCceEEEeCCCCHHHHHHHHHHHHHhh
Confidence 886 689999999999999999888653
No 67
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.40 E-value=3.9e-13 Score=157.53 Aligned_cols=185 Identities=18% Similarity=0.201 Sum_probs=124.8
Q ss_pred ceEEECCCCCchhHHHHHhhhhccccEEEe----eccceehhhh-----ccchhhHHhHHHHHHhcCCceeEhHHHHHHh
Q 003795 453 GILLCGPPGVGKTLLAKAVAGEAGVNFFSI----SASQFVEIYV-----GVGASRVRSLYQEAKDNAPSVVFIDELDAVG 523 (795)
Q Consensus 453 giLL~GPpGtGKTtLakaLA~el~~~~~~i----s~se~~~~~~-----g~~~~~l~~lf~~ar~~~p~Il~IDEID~l~ 523 (795)
++||+||||||||+||+++|..++...+.. +++++..... |.... ....+..+ ..+++|||||+.+.
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~~~-~~G~l~~A---~~gil~IDEid~l~ 404 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVREKGTGEYYL-EAGALVLA---DGGIAVIDEIDKMR 404 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECSSGGGTSSCSE-EECHHHHH---SSSEECCTTTTCCC
T ss_pred ceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceeeeccccccccc-cCCeeEec---CCCcEEeehhhhCC
Confidence 599999999999999999999887654432 1122211111 10000 01122222 35799999999875
Q ss_pred hhccCCCCCCcchHHHHHHHHHHhhhccc-----------CCCcEEEEeccCCCC-------------CCCccccCCCcc
Q 003795 524 RERGLIKGSGGQERDATLNQLLVCLDGFE-----------GRGNVITIASTNRPD-------------ILDPALVRPGRF 579 (795)
Q Consensus 524 ~~r~~~~~Sgge~~r~~l~~LL~~ld~~~-----------~~~~VlVIatTN~~d-------------~LdpaLlrpgRF 579 (795)
.. ..+.|+..|+... .+.++.||+|||... .++++|++ ||
T Consensus 405 ~~--------------~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~--RF 468 (595)
T 3f9v_A 405 DE--------------DRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPKFGRYISERPVSDNINLPPTILS--RF 468 (595)
T ss_dssp SH--------------HHHHHHHHHHSSSEEEESSSSEEEECCCCEEEEEECCTTCCSCTTSCSCTTTCSCSSSGG--GC
T ss_pred Hh--------------HhhhhHHHHhCCEEEEecCCcEEEecCceEEEEEcCCcCCccCcccCchhccCCCHHHHh--hC
Confidence 44 5666777766421 134688999999986 89999999 99
Q ss_pred cc-eecCCCCCHHHHHHHHHHHHccCC--------------------------CCChhhHHHHHhh--------------
Q 003795 580 DR-KIFIPKPGLIGRMEILKVHARKKP--------------------------MADDVDYLAVASM-------------- 618 (795)
Q Consensus 580 d~-~I~~~~Pd~~eR~~Il~~~l~~~~--------------------------~~~d~dl~~LA~~-------------- 618 (795)
|. .+..+.|+.+ ...|.++.+.... ..++.....+...
T Consensus 469 Dl~~~~~~~~~~e-~~~i~~~il~~~~~~~~~~~l~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lR~~~~~~~~~ 547 (595)
T 3f9v_A 469 DLIFILKDQPGEQ-DRELANYILDVHSGKSTKNIIDIDTLRKYIAYARKYVTPKITSEAKNLITDFFVEMRKKSSETPDS 547 (595)
T ss_dssp SCCEEECCTTHHH-HHHHHHHHHTTTCCCSSSSTTCCTTTHHHHHHHHHHHCCCCCCCTHHHHHHHHTTSSCSCCBCSSS
T ss_pred eEEEEeCCCCCHH-HHHHHHHHHHHhhccccccCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhccCCCc
Confidence 85 4455667777 7777776665321 1111112223322
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHH
Q 003795 619 TDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIE 658 (795)
Q Consensus 619 t~G~sgadL~~lv~~A~~~A~~~~~~~It~edl~~Al~~~ 658 (795)
+.+.|.+.+.++++.|...|..+++..|+.+|+.+|+...
T Consensus 548 ~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~Ai~l~ 587 (595)
T 3f9v_A 548 PILITPRQLEALIRISEAYAKMALKAEVTREDAERAINIM 587 (595)
T ss_dssp CBCSSTTTTTHHHHHHHHHHHTTSSCCSSHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHH
Confidence 3578999999999999999999999999999999998744
No 68
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.40 E-value=2.4e-12 Score=137.63 Aligned_cols=203 Identities=16% Similarity=0.170 Sum_probs=140.7
Q ss_pred cCccccccCccCchHHHHHHHHHHHhccccccccccCcccCCceEEECCCCCchhHHHHHhhhhc-----cccEEEeecc
Q 003795 411 RGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEA-----GVNFFSISAS 485 (795)
Q Consensus 411 ~~~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el-----~~~~~~is~s 485 (795)
+..+..|.+..|.+..+..+...+.. ...+. ++|+||+|+|||+++++++..+ +..++.++++
T Consensus 14 ~~~p~~~~~~~g~~~~~~~l~~~l~~-----------~~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~ 81 (323)
T 1sxj_B 14 KYRPQVLSDIVGNKETIDRLQQIAKD-----------GNMPH-MIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNAS 81 (323)
T ss_dssp HTCCSSGGGCCSCTHHHHHHHHHHHS-----------CCCCC-EEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTT
T ss_pred hcCCCCHHHHHCCHHHHHHHHHHHHc-----------CCCCe-EEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCc
Confidence 34556678888888888777666542 12233 8999999999999999999875 3456777765
Q ss_pred ceehhhhccchhhHHhHHHHHH-------hcCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcccCCCcEE
Q 003795 486 QFVEIYVGVGASRVRSLYQEAK-------DNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVI 558 (795)
Q Consensus 486 e~~~~~~g~~~~~l~~lf~~ar-------~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~Vl 558 (795)
+.. +...++.+++... ...+.+++|||++.+... ..+.|+..++. ...++.
T Consensus 82 ~~~------~~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~--------------~~~~L~~~le~--~~~~~~ 139 (323)
T 1sxj_B 82 DDR------GIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAG--------------AQQALRRTMEL--YSNSTR 139 (323)
T ss_dssp SCC------SHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCHH--------------HHHTTHHHHHH--TTTTEE
T ss_pred ccc------ChHHHHHHHHHHHhccccCCCCCceEEEEECcccCCHH--------------HHHHHHHHHhc--cCCCce
Confidence 421 1233445555444 223679999999987543 45566666663 345678
Q ss_pred EEeccCCCCCCCccccCCCcccceecCCCCCHHHHHHHHHHHHccCCCC-ChhhHHHHHhhCCCCcHHHHHHHHHHHHHH
Q 003795 559 TIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAIN 637 (795)
Q Consensus 559 VIatTN~~d~LdpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~~~~-~d~dl~~LA~~t~G~sgadL~~lv~~A~~~ 637 (795)
+|.+||.+..+++++.+ |+. .+.|++|+.++...++..++...... ++..+..++..+.|. .+.+.++++.+...
T Consensus 140 ~il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~-~r~a~~~l~~~~~~ 215 (323)
T 1sxj_B 140 FAFACNQSNKIIEPLQS--QCA-ILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGD-MRQAINNLQSTVAG 215 (323)
T ss_dssp EEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTC-HHHHHHHHHHHHHH
T ss_pred EEEEeCChhhchhHHHh--hce-EEeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC-HHHHHHHHHHHHhc
Confidence 88888999999999998 665 89999999999999999877644322 334467788887664 44444555544421
Q ss_pred HHHcCCCccCHHHHHHHHH
Q 003795 638 MMRDGRTEITTDDLLQAAQ 656 (795)
Q Consensus 638 A~~~~~~~It~edl~~Al~ 656 (795)
...|+.+++..++.
T Consensus 216 -----~~~i~~~~v~~~~~ 229 (323)
T 1sxj_B 216 -----HGLVNADNVFKIVD 229 (323)
T ss_dssp -----HSSBCHHHHHHHHT
T ss_pred -----CCCcCHHHHHHHHC
Confidence 13599999988764
No 69
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.39 E-value=3e-12 Score=139.99 Aligned_cols=203 Identities=20% Similarity=0.266 Sum_probs=142.2
Q ss_pred CccccccCccCchHHHHHHHHHHHhccccccccccCcccCCceEEECCCCCchhHHHHHhhhhcccc-------------
Q 003795 412 GVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVN------------- 478 (795)
Q Consensus 412 ~~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el~~~------------- 478 (795)
..+..|++..|.+..+..+...+.. ...+..++|+||+|+|||++++++++.++..
T Consensus 10 ~rp~~~~~~vg~~~~~~~L~~~l~~-----------~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~ 78 (373)
T 1jr3_A 10 WRPQTFADVVGQEHVLTALANGLSL-----------GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDN 78 (373)
T ss_dssp TCCCSTTTSCSCHHHHHHHHHHHHH-----------TCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHH
T ss_pred hCCCchhhccCcHHHHHHHHHHHHh-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHH
Confidence 3456788888888888777766542 1234568999999999999999999876432
Q ss_pred -----------EEEeeccceehhhhccchhhHHhHHHHHHh----cCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHH
Q 003795 479 -----------FFSISASQFVEIYVGVGASRVRSLYQEAKD----NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQ 543 (795)
Q Consensus 479 -----------~~~is~se~~~~~~g~~~~~l~~lf~~ar~----~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~ 543 (795)
++.++.+. ......++.+++.+.. ..+.+++|||+|.+... .++.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~--------------~~~~ 138 (373)
T 1jr3_A 79 CREIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRH--------------SFNA 138 (373)
T ss_dssp HHHHHTSCCSSCEEEETTC------SCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHH--------------HHHH
T ss_pred HHHHhccCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHH--------------HHHH
Confidence 12222111 0112234556665543 23679999999887543 5677
Q ss_pred HHHhhhcccCCCcEEEEeccCCCCCCCccccCCCcccceecCCCCCHHHHHHHHHHHHccCCCC-ChhhHHHHHhhCCCC
Q 003795 544 LLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGM 622 (795)
Q Consensus 544 LL~~ld~~~~~~~VlVIatTN~~d~LdpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~~~~-~d~dl~~LA~~t~G~ 622 (795)
|+..++. ...++++|++||.+..+.+.+++ |+ ..+.|++|+.++...+++.++...+.. ++..+..++..+.|
T Consensus 139 Ll~~le~--~~~~~~~Il~~~~~~~l~~~l~s--r~-~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G- 212 (373)
T 1jr3_A 139 LLKTLEE--PPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG- 212 (373)
T ss_dssp HHHHHHS--CCSSEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSS-
T ss_pred HHHHHhc--CCCceEEEEEeCChHhCcHHHHh--he-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCCC-
Confidence 7777773 45678888888888899999988 66 589999999999999999887654433 33346678888866
Q ss_pred cHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHH
Q 003795 623 VGAELANIVEVAAINMMRDGRTEITTDDLLQAA 655 (795)
Q Consensus 623 sgadL~~lv~~A~~~A~~~~~~~It~edl~~Al 655 (795)
+.+.+.++++.+... +...|+.+++..++
T Consensus 213 ~~r~~~~~l~~~~~~----~~~~i~~~~v~~~~ 241 (373)
T 1jr3_A 213 SLRDALSLTDQAIAS----GDGQVSTQAVSAML 241 (373)
T ss_dssp CHHHHHHHHHHHHHH----TTTCBCHHHHHHHT
T ss_pred CHHHHHHHHHHHHHh----cCCcccHHHHHHHh
Confidence 677777888776532 23568988887764
No 70
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.35 E-value=1.5e-12 Score=156.91 Aligned_cols=189 Identities=23% Similarity=0.321 Sum_probs=129.6
Q ss_pred ccccccCccCchHHHHHHHHHHHhccccccccccCcccCCceEEECCCCCchhHHHHHhhhhc----------cccEEEe
Q 003795 413 VDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEA----------GVNFFSI 482 (795)
Q Consensus 413 ~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el----------~~~~~~i 482 (795)
..-.++.+.|.++.+..+..++.. ..+.+++|+||||||||++|++||..+ +..++.+
T Consensus 175 ~~~~ld~iiG~~~~i~~l~~~l~~------------~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~ 242 (758)
T 3pxi_A 175 KEDSLDPVIGRSKEIQRVIEVLSR------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTL 242 (758)
T ss_dssp TSSCSCCCCCCHHHHHHHHHHHHC------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC
T ss_pred hhCCCCCccCchHHHHHHHHHHhC------------CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEe
Confidence 345677888888877666555431 223458999999999999999999986 6777777
Q ss_pred eccceehhhhccchhhHHhHHHHHHhcCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcccCCCcEEEEec
Q 003795 483 SASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIAS 562 (795)
Q Consensus 483 s~se~~~~~~g~~~~~l~~lf~~ar~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVIat 562 (795)
++ ...|.|.....++.+|..+....++|+||| +.. ...+.|+..++ .+.+.+|++
T Consensus 243 ~~---g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD-----~~~-------------~~~~~L~~~l~----~~~v~~I~a 297 (758)
T 3pxi_A 243 DM---GTKYRGEFEDRLKKVMDEIRQAGNIILFID-----AAI-------------DASNILKPSLA----RGELQCIGA 297 (758)
T ss_dssp -------------CTTHHHHHHHHHTCCCCEEEEC-----C---------------------CCCTT----SSSCEEEEE
T ss_pred cc---cccccchHHHHHHHHHHHHHhcCCEEEEEc-----Cch-------------hHHHHHHHHHh----cCCEEEEeC
Confidence 77 445677778888999999998889999999 110 13444444443 567899999
Q ss_pred cCCCC-----CCCccccCCCcccceecCCCCCHHHHHHHHHHHHccCC----C-CChhhHHHHHhh-----CCCCcHHHH
Q 003795 563 TNRPD-----ILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKP----M-ADDVDYLAVASM-----TDGMVGAEL 627 (795)
Q Consensus 563 TN~~d-----~LdpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~~----~-~~d~dl~~LA~~-----t~G~sgadL 627 (795)
||..+ .+|++++| ||. .|.|+.|+.+++..|++.++.... . ..+..+..++.. +.++.++..
T Consensus 298 t~~~~~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i~~~~~p~~a 374 (758)
T 3pxi_A 298 TTLDEYRKYIEKDAALER--RFQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKA 374 (758)
T ss_dssp CCTTTTHHHHTTCSHHHH--SEE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHH
T ss_pred CChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcccccCcCCcHH
Confidence 99888 69999999 995 699999999999999997765521 1 122334444432 446777888
Q ss_pred HHHHHHHHHHHHHc
Q 003795 628 ANIVEVAAINMMRD 641 (795)
Q Consensus 628 ~~lv~~A~~~A~~~ 641 (795)
..+++.|+..+...
T Consensus 375 i~ll~~a~~~~~~~ 388 (758)
T 3pxi_A 375 IDLIDEAGSKVRLR 388 (758)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh
Confidence 88898887666544
No 71
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.35 E-value=1.9e-12 Score=157.96 Aligned_cols=203 Identities=26% Similarity=0.370 Sum_probs=128.8
Q ss_pred cccccCccCchHHHHHHHHHHHhccccccccccCcccCCceEEECCCCCchhHHHHHhhhhc----------cccEEEee
Q 003795 414 DVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEA----------GVNFFSIS 483 (795)
Q Consensus 414 ~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el----------~~~~~~is 483 (795)
+..|+.+.|.++.+..+.++... ..+.+++|+||||||||++++++|+.+ +.+++.++
T Consensus 166 ~~~ld~viGr~~~i~~l~~~l~~------------~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~ 233 (854)
T 1qvr_A 166 EGKLDPVIGRDEEIRRVIQILLR------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQ 233 (854)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHHC------------SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEEC
T ss_pred cCCCcccCCcHHHHHHHHHHHhc------------CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEee
Confidence 45677777877666555443321 123458999999999999999999987 77899999
Q ss_pred cccee--hhhhccchhhHHhHHHHHHhc-CCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcccCCCcEEEE
Q 003795 484 ASQFV--EIYVGVGASRVRSLYQEAKDN-APSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITI 560 (795)
Q Consensus 484 ~se~~--~~~~g~~~~~l~~lf~~ar~~-~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVI 560 (795)
++.+. ..|.|.....+..++..+... .|+|+||||++.+.+.... .++ ....+.|...++ ..++.+|
T Consensus 234 ~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~---~g~---~~~~~~L~~~l~----~~~i~~I 303 (854)
T 1qvr_A 234 MGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKA---EGA---VDAGNMLKPALA----RGELRLI 303 (854)
T ss_dssp C-----------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------------HHHHH----TTCCCEE
T ss_pred hHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCc---cch---HHHHHHHHHHHh----CCCeEEE
Confidence 88876 446777777788899888765 6789999999998654211 111 123333443343 3567889
Q ss_pred eccCCCC----CCCccccCCCcccceecCCCCCHHHHHHHHHHHHccC----CC-CChhhHHHHHhh-----CCCCcHHH
Q 003795 561 ASTNRPD----ILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKK----PM-ADDVDYLAVASM-----TDGMVGAE 626 (795)
Q Consensus 561 atTN~~d----~LdpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~----~~-~~d~dl~~LA~~-----t~G~sgad 626 (795)
++||.++ .++++|.+ ||+. |.|+.|+.+++..|++.++... .. ..+..+..++.. +.++.+..
T Consensus 304 ~at~~~~~~~~~~d~aL~r--Rf~~-i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r~i~~~~lp~k 380 (854)
T 1qvr_A 304 GATTLDEYREIEKDPALER--RFQP-VYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERRLPDK 380 (854)
T ss_dssp EEECHHHHHHHTTCTTTCS--CCCC-EEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHCCSSCTHHH
T ss_pred EecCchHHhhhccCHHHHh--CCce-EEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhhhcccccChHH
Confidence 8888765 47999999 9985 9999999999999998766432 11 122234444443 45677888
Q ss_pred HHHHHHHHHHHHHHc
Q 003795 627 LANIVEVAAINMMRD 641 (795)
Q Consensus 627 L~~lv~~A~~~A~~~ 641 (795)
...++++|+..+...
T Consensus 381 ai~lldea~a~~~~~ 395 (854)
T 1qvr_A 381 AIDLIDEAAARLRMA 395 (854)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhh
Confidence 889999888766543
No 72
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.35 E-value=4.2e-13 Score=153.88 Aligned_cols=184 Identities=18% Similarity=0.248 Sum_probs=116.4
Q ss_pred CceEEECCCCCchhHHHHHhhhhccc--cEEEeeccc-eehhhhccch-hhH--HhHHHHHHhc---CCceeEhHHHHHH
Q 003795 452 GGILLCGPPGVGKTLLAKAVAGEAGV--NFFSISASQ-FVEIYVGVGA-SRV--RSLYQEAKDN---APSVVFIDELDAV 522 (795)
Q Consensus 452 ~giLL~GPpGtGKTtLakaLA~el~~--~~~~is~se-~~~~~~g~~~-~~l--~~lf~~ar~~---~p~Il~IDEID~l 522 (795)
++++|+||||||||+||++||..++. ++..+.+.- .....+|... ... ...|..+... .++|+|||||+.+
T Consensus 42 ~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G~~~~~~~~~~g~~~~~~~g~l~~~~IL~IDEI~r~ 121 (500)
T 3nbx_X 42 ESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKDEGRYERLTSGYLPEAEIVFLDEIWKA 121 (500)
T ss_dssp CEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHCCBC----------CBCCTTSGGGCSEEEEESGGGC
T ss_pred CeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcCcccHHHHhhchhHHhhhccCCCcceeeeHHhHhhh
Confidence 35899999999999999999998743 444444421 0111222100 000 1112111111 3679999999776
Q ss_pred hhhccCCCCCCcchHHHHHHHHHHhhhccc--------CCCcEEEEeccCCCCC---CCccccCCCcccceecCCCCCH-
Q 003795 523 GRERGLIKGSGGQERDATLNQLLVCLDGFE--------GRGNVITIASTNRPDI---LDPALVRPGRFDRKIFIPKPGL- 590 (795)
Q Consensus 523 ~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~--------~~~~VlVIatTN~~d~---LdpaLlrpgRFd~~I~~~~Pd~- 590 (795)
.+. +.+.|+..|+... .....++|+|||.+.. +.+++++ ||...+.+++|+.
T Consensus 122 ~~~--------------~q~~LL~~lee~~v~i~G~~~~~~~~~iI~ATN~lpe~~~~~~aLld--RF~~~i~v~~p~~~ 185 (500)
T 3nbx_X 122 GPA--------------ILNTLLTAINERQFRNGAHVEKIPMRLLVAASNELPEADSSLEALYD--RMLIRLWLDKVQDK 185 (500)
T ss_dssp CHH--------------HHHHHHHHHHSSEEECSSSEEECCCCEEEEEESSCCCTTCTTHHHHT--TCCEEEECCSCCCH
T ss_pred cHH--------------HHHHHHHHHHHHhccCCCCcCCcchhhhhhccccCCCccccHHHHHH--HHHHHHHHHHhhhh
Confidence 443 6777777775311 1112245777775322 3458888 9999999999987
Q ss_pred HHHHHHHHHHHcc-------------------------CCCCChhhHHHHHhh---------CCCCcHHHHHHHHHHHHH
Q 003795 591 IGRMEILKVHARK-------------------------KPMADDVDYLAVASM---------TDGMVGAELANIVEVAAI 636 (795)
Q Consensus 591 ~eR~~Il~~~l~~-------------------------~~~~~d~dl~~LA~~---------t~G~sgadL~~lv~~A~~ 636 (795)
+++..|++.+... ..+.++ -...++.. ..|.|.+.+..+++.|..
T Consensus 186 ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v~v~d~-v~e~i~~l~~~lr~~r~~~~iS~R~~~~llr~A~A 264 (500)
T 3nbx_X 186 ANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLPDH-VFELIFMLRQQLDKLPDAPYVSDRRWKKAIRLLQA 264 (500)
T ss_dssp HHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTCBCCHH-HHHHHHHHHHHHHHCSSSCCCCHHHHHHHHHHHHH
T ss_pred hhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCcccCchH-HHHHHHHHHHHhhcCCCCCccchhHHHHHHHHHHH
Confidence 6788998765431 111111 12223222 358899999999999999
Q ss_pred HHHHcCCCccCHHHHH
Q 003795 637 NMMRDGRTEITTDDLL 652 (795)
Q Consensus 637 ~A~~~~~~~It~edl~ 652 (795)
.|...++..|+.+|+.
T Consensus 265 ~A~l~gr~~Vt~eDv~ 280 (500)
T 3nbx_X 265 SAFFSGRSAVAPVDLI 280 (500)
T ss_dssp HHHHTTCSBCCGGGGG
T ss_pred HHhhcCCccccchHHH
Confidence 9999999999999988
No 73
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.35 E-value=6e-12 Score=134.69 Aligned_cols=203 Identities=25% Similarity=0.272 Sum_probs=138.3
Q ss_pred ccCccccccCccCchHHHHHHHHHHHhccccccccccCcccCCceEEECCCCCchhHHHHHhhhhcc-----ccEEEeec
Q 003795 410 ERGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAG-----VNFFSISA 484 (795)
Q Consensus 410 ~~~~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el~-----~~~~~is~ 484 (795)
++..+..|++..|.+..+..+...+..- .. .+++|+||+|+|||+++++++..+. ..++.+++
T Consensus 17 ~k~~p~~~~~~~g~~~~~~~l~~~l~~~-----------~~-~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~ 84 (327)
T 1iqp_A 17 EKYRPQRLDDIVGQEHIVKRLKHYVKTG-----------SM-PHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNA 84 (327)
T ss_dssp HHTCCCSTTTCCSCHHHHHHHHHHHHHT-----------CC-CEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEET
T ss_pred hccCCCCHHHhhCCHHHHHHHHHHHHcC-----------CC-CeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeec
Confidence 3445677888999888887777665421 12 2389999999999999999999763 34666766
Q ss_pred cceehhhhccchhhHHhHHHHH-H-----hcCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcccCCCcEE
Q 003795 485 SQFVEIYVGVGASRVRSLYQEA-K-----DNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVI 558 (795)
Q Consensus 485 se~~~~~~g~~~~~l~~lf~~a-r-----~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~Vl 558 (795)
++.... ..++..+... . ...+.+++|||++.+... ..+.|+..++. ...++.
T Consensus 85 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~--------------~~~~L~~~le~--~~~~~~ 142 (327)
T 1iqp_A 85 SDERGI------NVIREKVKEFARTKPIGGASFKIIFLDEADALTQD--------------AQQALRRTMEM--FSSNVR 142 (327)
T ss_dssp TCHHHH------HTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCHH--------------HHHHHHHHHHH--TTTTEE
T ss_pred cccCch------HHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCHH--------------HHHHHHHHHHh--cCCCCe
Confidence 542111 1112222221 1 134679999999987543 56667777763 345678
Q ss_pred EEeccCCCCCCCccccCCCcccceecCCCCCHHHHHHHHHHHHccCCCC-ChhhHHHHHhhCCCCcHHHHHHHHHHHHHH
Q 003795 559 TIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAIN 637 (795)
Q Consensus 559 VIatTN~~d~LdpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~~~~-~d~dl~~LA~~t~G~sgadL~~lv~~A~~~ 637 (795)
+|++||.++.+++++.+ |+. .+.|++|+.++...++...+...... ++..+..++..+.| +.+.+.++++.+..
T Consensus 143 ~i~~~~~~~~l~~~l~s--r~~-~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~~~~~l~~~~~- 217 (327)
T 1iqp_A 143 FILSCNYSSKIIEPIQS--RCA-IFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEG-DMRRAINILQAAAA- 217 (327)
T ss_dssp EEEEESCGGGSCHHHHH--TEE-EEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTT-CHHHHHHHHHHHHT-
T ss_pred EEEEeCCccccCHHHHh--hCc-EEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCC-CHHHHHHHHHHHHh-
Confidence 88889999999999988 776 78999999999999999887655432 33446677777765 45555566654432
Q ss_pred HHHcCCCccCHHHHHHHH
Q 003795 638 MMRDGRTEITTDDLLQAA 655 (795)
Q Consensus 638 A~~~~~~~It~edl~~Al 655 (795)
....|+.+++..++
T Consensus 218 ----~~~~i~~~~v~~~~ 231 (327)
T 1iqp_A 218 ----LDKKITDENVFMVA 231 (327)
T ss_dssp ----TCSEECHHHHHHHT
T ss_pred ----cCCCCCHHHHHHHH
Confidence 23368888887764
No 74
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.31 E-value=7.5e-12 Score=136.30 Aligned_cols=209 Identities=19% Similarity=0.218 Sum_probs=134.3
Q ss_pred ccCccccccCccCchHHHHHHHHHHHhccccccccccCcccCCceEEECCCCCchhHHHHHhhhhccc-----cEEEeec
Q 003795 410 ERGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGV-----NFFSISA 484 (795)
Q Consensus 410 ~~~~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el~~-----~~~~is~ 484 (795)
++..+..|.+..|....+..+...+.. -.+|. ++|+||||+||||+++++|+.+.. .+..++.
T Consensus 17 ~k~rp~~~~~~~g~~~~~~~L~~~i~~-----------g~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~ 84 (340)
T 1sxj_C 17 EKYRPETLDEVYGQNEVITTVRKFVDE-----------GKLPH-LLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNA 84 (340)
T ss_dssp HHTCCSSGGGCCSCHHHHHHHHHHHHT-----------TCCCC-EEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECT
T ss_pred HHhCCCcHHHhcCcHHHHHHHHHHHhc-----------CCCce-EEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcC
Confidence 344566788888877777666655442 12333 899999999999999999998633 3555555
Q ss_pred cceehhhhccchhhHHhHHHHHHh------cCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcccCCCcEE
Q 003795 485 SQFVEIYVGVGASRVRSLYQEAKD------NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVI 558 (795)
Q Consensus 485 se~~~~~~g~~~~~l~~lf~~ar~------~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~Vl 558 (795)
++.. +...++..+..... ..+.+++|||+|.+... ..+.|+..++. ...++.
T Consensus 85 ~~~~------~~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~--------------~~~~L~~~le~--~~~~~~ 142 (340)
T 1sxj_C 85 SDDR------GIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNA--------------AQNALRRVIER--YTKNTR 142 (340)
T ss_dssp TSCC------SHHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHH--------------HHHHHHHHHHH--TTTTEE
T ss_pred cccc------cHHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCHH--------------HHHHHHHHHhc--CCCCeE
Confidence 4321 11223333333221 23679999999987543 56667777773 345667
Q ss_pred EEeccCCCCCCCccccCCCcccceecCCCCCHHHHHHHHHHHHccCCC-CChhhHHHHHhhCCCCcHHHHHHHHHHHHHH
Q 003795 559 TIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPM-ADDVDYLAVASMTDGMVGAELANIVEVAAIN 637 (795)
Q Consensus 559 VIatTN~~d~LdpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~~~-~~d~dl~~LA~~t~G~sgadL~~lv~~A~~~ 637 (795)
+|.+||.+..+.+++++ |+. .+.|++++.++..+++...+....+ .++.....++..+.|. .+.+.++++.+...
T Consensus 143 ~il~~n~~~~i~~~i~s--R~~-~~~~~~l~~~~~~~~l~~~~~~~~~~i~~~~~~~i~~~s~G~-~r~~~~~l~~~~~~ 218 (340)
T 1sxj_C 143 FCVLANYAHKLTPALLS--QCT-RFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNGD-MRRVLNVLQSCKAT 218 (340)
T ss_dssp EEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHTTTCCBCHHHHHHHHHHHTTC-HHHHHHHTTTTTTT
T ss_pred EEEEecCccccchhHHh--hce-eEeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC-HHHHHHHHHHHHHh
Confidence 78888999999999998 776 7889999999999988887754332 2333456677776553 33333444433322
Q ss_pred HHHcCCCccCHHHHHHHHH
Q 003795 638 MMRDGRTEITTDDLLQAAQ 656 (795)
Q Consensus 638 A~~~~~~~It~edl~~Al~ 656 (795)
+...+...|+.+++..++.
T Consensus 219 ~~~~~~~~it~~~v~~~~~ 237 (340)
T 1sxj_C 219 LDNPDEDEISDDVIYECCG 237 (340)
T ss_dssp TCSSSCCCBCHHHHHHHTT
T ss_pred cCCcccccccHHHHHHHhC
Confidence 2111223699999887654
No 75
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.29 E-value=1.3e-12 Score=127.64 Aligned_cols=152 Identities=30% Similarity=0.431 Sum_probs=100.2
Q ss_pred cccccCccCchHHHHHHHHHHHhccccccccccCcccCCceEEECCCCCchhHHHHHhhhhc----------cccEEEee
Q 003795 414 DVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEA----------GVNFFSIS 483 (795)
Q Consensus 414 ~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el----------~~~~~~is 483 (795)
...|++..|....+..+.+... . ..+.+++|+||+|||||+++++++..+ +.+++.++
T Consensus 18 ~~~~~~~~g~~~~~~~l~~~l~---~---------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (187)
T 2p65_A 18 AGKLDPVIGRDTEIRRAIQILS---R---------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLD 85 (187)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHT---S---------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEEC
T ss_pred ccccchhhcchHHHHHHHHHHh---C---------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEe
Confidence 3456677777766554444332 1 224568999999999999999999976 67777777
Q ss_pred ccceehh--hhccchhhHHhHHHHHHhc-CCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcccCCCcEEEE
Q 003795 484 ASQFVEI--YVGVGASRVRSLYQEAKDN-APSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITI 560 (795)
Q Consensus 484 ~se~~~~--~~g~~~~~l~~lf~~ar~~-~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVI 560 (795)
+..+... +.+.....+..++..+... .+.+++|||++.+...+.. ..+... .++.|...++ ..++++|
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~--~~~~~~---~~~~l~~~~~----~~~~~ii 156 (187)
T 2p65_A 86 LSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAV--AEGALD---AGNILKPMLA----RGELRCI 156 (187)
T ss_dssp HHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSS--CTTSCC---THHHHHHHHH----TTCSCEE
T ss_pred HHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhcccccc--cccchH---HHHHHHHHHh----cCCeeEE
Confidence 7665422 3333334456666666554 5779999999998643221 011111 3333333333 3567889
Q ss_pred eccCCCC-----CCCccccCCCcccceecCCCCC
Q 003795 561 ASTNRPD-----ILDPALVRPGRFDRKIFIPKPG 589 (795)
Q Consensus 561 atTN~~d-----~LdpaLlrpgRFd~~I~~~~Pd 589 (795)
++||.++ .+++++++ ||+ .+.+++|+
T Consensus 157 ~~~~~~~~~~~~~~~~~l~~--R~~-~i~i~~p~ 187 (187)
T 2p65_A 157 GATTVSEYRQFIEKDKALER--RFQ-QILVEQPS 187 (187)
T ss_dssp EEECHHHHHHHTTTCHHHHH--HEE-EEECCSCC
T ss_pred EecCHHHHHHHHhccHHHHH--hcC-cccCCCCC
Confidence 9998765 58999999 999 49999885
No 76
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.29 E-value=6.9e-12 Score=131.48 Aligned_cols=205 Identities=19% Similarity=0.189 Sum_probs=120.0
Q ss_pred ccccCccCchHHHHHHHHHHHhccccccccccCcccCCceEEECCCCCchhHHHHHhhhhcc---ccEEEeeccceehh-
Q 003795 415 VKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAG---VNFFSISASQFVEI- 490 (795)
Q Consensus 415 ~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el~---~~~~~is~se~~~~- 490 (795)
..|+...|....+..+.+.+..+.. .+.+++|+||||||||++|++|+..+. .+++.++++.+...
T Consensus 3 ~~f~~~ig~~~~~~~~~~~~~~~~~----------~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~~ 72 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLEQVSHLAP----------LDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENL 72 (265)
T ss_dssp -------CCCHHHHHHHHHHHHHTT----------SCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHHH
T ss_pred cccccceeCCHHHHHHHHHHHHHhC----------CCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChhH
Confidence 4577777888777777665554321 234699999999999999999998774 68999999876432
Q ss_pred ----hhccchhh-------HHhHHHHHHhcCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcc--------
Q 003795 491 ----YVGVGASR-------VRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGF-------- 551 (795)
Q Consensus 491 ----~~g~~~~~-------l~~lf~~ar~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~-------- 551 (795)
.+|...+. ....+.. ..++++||||++.+... .+..|+..++..
T Consensus 73 ~~~~l~g~~~~~~~g~~~~~~~~l~~---a~~~~l~lDEi~~l~~~--------------~q~~Ll~~l~~~~~~~~g~~ 135 (265)
T 2bjv_A 73 LDSELFGHEAGAFTGAQKRHPGRFER---ADGGTLFLDELATAPMM--------------VQEKLLRVIEYGELERVGGS 135 (265)
T ss_dssp HHHHHHCCC---------CCCCHHHH---TTTSEEEEESGGGSCHH--------------HHHHHHHHHHHCEECCCCC-
T ss_pred HHHHhcCCcccccccccccccchhhh---cCCcEEEEechHhcCHH--------------HHHHHHHHHHhCCeecCCCc
Confidence 11211100 0112222 23579999999988543 455666666532
Q ss_pred -cCCCcEEEEeccCCC-------CCCCccccCCCcccc-eecCCCCCH--HHHHHHHHHHHcc----CCC-----CChhh
Q 003795 552 -EGRGNVITIASTNRP-------DILDPALVRPGRFDR-KIFIPKPGL--IGRMEILKVHARK----KPM-----ADDVD 611 (795)
Q Consensus 552 -~~~~~VlVIatTN~~-------d~LdpaLlrpgRFd~-~I~~~~Pd~--~eR~~Il~~~l~~----~~~-----~~d~d 611 (795)
....++.+|++||.. ..++++|.+ ||.. .|.+|+... ++...+++.++.. ... .++..
T Consensus 136 ~~~~~~~~iI~atn~~~~~~~~~~~~~~~L~~--Rl~~~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~a 213 (265)
T 2bjv_A 136 QPLQVNVRLVCATNADLPAMVNEGTFRADLLD--ALAFDVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTERA 213 (265)
T ss_dssp -CEECCCEEEEEESSCHHHHHHHTSSCHHHHH--HHCSEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCHHH
T ss_pred ccccCCeEEEEecCcCHHHHHHcCCccHHHHH--hhcCcEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCHHH
Confidence 112467889999874 246788887 8863 445554432 3344454444322 221 12233
Q ss_pred HHHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCccCHHHH
Q 003795 612 YLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDL 651 (795)
Q Consensus 612 l~~LA~~t~G~sgadL~~lv~~A~~~A~~~~~~~It~edl 651 (795)
+..+....-..+.++|.++++.++..+ ....|+.+|+
T Consensus 214 ~~~L~~~~~~gn~reL~~~l~~~~~~~---~~~~i~~~~l 250 (265)
T 2bjv_A 214 RETLLNYRWPGNIRELKNVVERSVYRH---GTSDYPLDDI 250 (265)
T ss_dssp HHHHHHSCCTTHHHHHHHHHHHHHHHH---CCSSSCBCCC
T ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHhC---CCCcCcHHHc
Confidence 455555554456789999999887554 2334665554
No 77
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.24 E-value=2.5e-11 Score=132.15 Aligned_cols=192 Identities=16% Similarity=0.209 Sum_probs=123.5
Q ss_pred cccCccccccCccCchHHHHHHHHHHHhccccccccccCcccCCceEEECCCCCchhHHHHHhhhhc-cccE--------
Q 003795 409 LERGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEA-GVNF-------- 479 (795)
Q Consensus 409 ~~~~~~~~f~~~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el-~~~~-------- 479 (795)
.++..+..|++..|....+..+...+. . ....+. ++|+||||+||||+++++++.+ +...
T Consensus 5 ~~kyrP~~~~~~vg~~~~~~~l~~~~~--~--------~~~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~ 73 (354)
T 1sxj_E 5 VDKYRPKSLNALSHNEELTNFLKSLSD--Q--------PRDLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVR 73 (354)
T ss_dssp TTTTCCCSGGGCCSCHHHHHHHHTTTT--C--------TTCCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------
T ss_pred hhccCCCCHHHhcCCHHHHHHHHHHHh--h--------CCCCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecce
Confidence 344566778888888777655544331 1 112344 8999999999999999999954 2221
Q ss_pred --------------------EEeeccceehhhhccch-hhHHhHHHHHH--------------hcCCceeEhHHHHHHhh
Q 003795 480 --------------------FSISASQFVEIYVGVGA-SRVRSLYQEAK--------------DNAPSVVFIDELDAVGR 524 (795)
Q Consensus 480 --------------------~~is~se~~~~~~g~~~-~~l~~lf~~ar--------------~~~p~Il~IDEID~l~~ 524 (795)
+.++.+. .+... ..++..+..+. ...|.+++|||++.+..
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~ 148 (354)
T 1sxj_E 74 QFVTASNRKLELNVVSSPYHLEITPSD-----MGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTK 148 (354)
T ss_dssp ------------CCEECSSEEEECCC---------CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCH
T ss_pred eecccccccceeeeecccceEEecHhh-----cCCcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccCH
Confidence 1111111 01000 02333443332 22567999999988533
Q ss_pred hccCCCCCCcchHHHHHHHHHHhhhcccCCCcEEEEeccCCCCCCCccccCCCcccceecCCCCCHHHHHHHHHHHHccC
Q 003795 525 ERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKK 604 (795)
Q Consensus 525 ~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVIatTN~~d~LdpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~ 604 (795)
. ..+.|+..++.. ..++.+|.+||.++.+.+++++ |+ ..+.|++|+.++...+++..+...
T Consensus 149 ~--------------~~~~L~~~le~~--~~~~~~Il~t~~~~~l~~~l~s--R~-~~~~~~~~~~~~~~~~l~~~~~~~ 209 (354)
T 1sxj_E 149 D--------------AQAALRRTMEKY--SKNIRLIMVCDSMSPIIAPIKS--QC-LLIRCPAPSDSEISTILSDVVTNE 209 (354)
T ss_dssp H--------------HHHHHHHHHHHS--TTTEEEEEEESCSCSSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHH
T ss_pred H--------------HHHHHHHHHHhh--cCCCEEEEEeCCHHHHHHHHHh--hc-eEEecCCcCHHHHHHHHHHHHHHc
Confidence 2 566677777643 3467888888999999999998 77 689999999999999999887654
Q ss_pred CCC-C-hhhHHHHHhhCCCCcHHHHHHHHHHHHH
Q 003795 605 PMA-D-DVDYLAVASMTDGMVGAELANIVEVAAI 636 (795)
Q Consensus 605 ~~~-~-d~dl~~LA~~t~G~sgadL~~lv~~A~~ 636 (795)
... + +..+..++..+.| +.+++.++++.+..
T Consensus 210 ~~~~~~~~~l~~i~~~~~G-~~r~a~~~l~~~~~ 242 (354)
T 1sxj_E 210 RIQLETKDILKRIAQASNG-NLRVSLLMLESMAL 242 (354)
T ss_dssp TCEECCSHHHHHHHHHHTT-CHHHHHHHHTHHHH
T ss_pred CCCCCcHHHHHHHHHHcCC-CHHHHHHHHHHHHH
Confidence 432 2 3456778887765 45555566665543
No 78
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.18 E-value=2.6e-11 Score=130.58 Aligned_cols=201 Identities=19% Similarity=0.172 Sum_probs=122.4
Q ss_pred ccCchHHHHHHHHHHHhccccccccccCcccCCceEEECCCCCchhHHHHHhhhhc---cccEEEeeccceehh-----h
Q 003795 420 VAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEI-----Y 491 (795)
Q Consensus 420 ~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el---~~~~~~is~se~~~~-----~ 491 (795)
+.|....+..+.+.+..+. ..+.+++|+||||||||++|++|+... +.+++.++|+.+... .
T Consensus 4 iig~s~~~~~~~~~~~~~a----------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~~l 73 (304)
T 1ojl_A 4 MIGSSPAMQHLLNEIAMVA----------PSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLESEL 73 (304)
T ss_dssp CCCCSHHHHHHHHHHHHHC----------STTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHHHH
T ss_pred cEECCHHHHHHHHHHHHHh----------CCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHHHh
Confidence 4456666666666555432 223459999999999999999999854 578999998876542 1
Q ss_pred hccchh-------hHHhHHHHHHhcCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhccc---------CCC
Q 003795 492 VGVGAS-------RVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE---------GRG 555 (795)
Q Consensus 492 ~g~~~~-------~l~~lf~~ar~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~---------~~~ 555 (795)
+|...+ .....|+.+ .++++|||||+.+... ....|+..++... ...
T Consensus 74 fg~~~g~~tg~~~~~~g~~~~a---~~g~L~LDEi~~l~~~--------------~q~~Ll~~l~~~~~~~~g~~~~~~~ 136 (304)
T 1ojl_A 74 FGHEKGAFTGADKRREGRFVEA---DGGTLFLDEIGDISPL--------------MQVRLLRAIQEREVQRVGSNQTISV 136 (304)
T ss_dssp TCCCSSCCC---CCCCCHHHHH---TTSEEEEESCTTCCHH--------------HHHHHHHHHHSSBCCBTTBCCCCBC
T ss_pred cCccccccCchhhhhcCHHHhc---CCCEEEEeccccCCHH--------------HHHHHHHHHhcCEeeecCCcccccC
Confidence 222110 112344444 3469999999988543 5566666666421 134
Q ss_pred cEEEEeccCCC-------CCCCccccCCCccc-ceecCCCCC--HHHHHHHHHHHHccC----C----CCChhhHHHHHh
Q 003795 556 NVITIASTNRP-------DILDPALVRPGRFD-RKIFIPKPG--LIGRMEILKVHARKK----P----MADDVDYLAVAS 617 (795)
Q Consensus 556 ~VlVIatTN~~-------d~LdpaLlrpgRFd-~~I~~~~Pd--~~eR~~Il~~~l~~~----~----~~~d~dl~~LA~ 617 (795)
++.||++||.. ..+++.|.. ||. ..|.+|+.. .++...++++++... . ..++..+..+..
T Consensus 137 ~~riI~atn~~l~~~v~~g~fr~~L~~--Rl~~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~L~~ 214 (304)
T 1ojl_A 137 DVRLIAATHRDLAEEVSAGRFRQDLYY--RLNVVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDLLIH 214 (304)
T ss_dssp CCEEEEEESSCHHHHHHHTSSCHHHHH--HHSSEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHH
T ss_pred CeEEEEecCccHHHHHHhCCcHHHHHh--hcCeeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHHHHHc
Confidence 68899999875 235556665 664 224454443 334445666554321 1 122333556666
Q ss_pred hCCCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHH
Q 003795 618 MTDGMVGAELANIVEVAAINMMRDGRTEITTDDLL 652 (795)
Q Consensus 618 ~t~G~sgadL~~lv~~A~~~A~~~~~~~It~edl~ 652 (795)
+.-..+.++|.+++..|+..+ ....|+.+|+.
T Consensus 215 ~~wpGnvReL~~~l~~~~~~~---~~~~i~~~~l~ 246 (304)
T 1ojl_A 215 YDWPGNIRELENAIERAVVLL---TGEYISERELP 246 (304)
T ss_dssp CCCSSHHHHHHHHHHHHHHHC---CSSSBCGGGSC
T ss_pred CCCCCCHHHHHHHHHHHHHhC---CCCcccHHhhh
Confidence 664457789999998887543 23457766653
No 79
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.16 E-value=9.7e-11 Score=127.55 Aligned_cols=159 Identities=17% Similarity=0.238 Sum_probs=110.9
Q ss_pred ccCCceEEECCCCCchhHHHHHhhhhccc------------------------cEEEeeccceehhhhccchhhHHhHHH
Q 003795 449 RIPGGILLCGPPGVGKTLLAKAVAGEAGV------------------------NFFSISASQFVEIYVGVGASRVRSLYQ 504 (795)
Q Consensus 449 ~i~~giLL~GPpGtGKTtLakaLA~el~~------------------------~~~~is~se~~~~~~g~~~~~l~~lf~ 504 (795)
+++.+++|+||+|+|||++++++|..+.. .+..++..+- .-..+...++.+++
T Consensus 22 ~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~---~~~~~i~~ir~l~~ 98 (334)
T 1a5t_A 22 RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKG---KNTLGVDAVREVTE 98 (334)
T ss_dssp CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTT---CSSBCHHHHHHHHH
T ss_pred CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEecccc---CCCCCHHHHHHHHH
Confidence 45667999999999999999999987643 2233322100 00112234566666
Q ss_pred HHHhc----CCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcccCCCcEEEEeccCCCCCCCccccCCCccc
Q 003795 505 EAKDN----APSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFD 580 (795)
Q Consensus 505 ~ar~~----~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVIatTN~~d~LdpaLlrpgRFd 580 (795)
.+... .+.|++|||+|.+... ..+.|+..++ ....++++|.+||.++.+.|++++ |+.
T Consensus 99 ~~~~~~~~~~~kvviIdead~l~~~--------------a~naLLk~lE--ep~~~~~~Il~t~~~~~l~~ti~S--Rc~ 160 (334)
T 1a5t_A 99 KLNEHARLGGAKVVWVTDAALLTDA--------------AANALLKTLE--EPPAETWFFLATREPERLLATLRS--RCR 160 (334)
T ss_dssp HTTSCCTTSSCEEEEESCGGGBCHH--------------HHHHHHHHHT--SCCTTEEEEEEESCGGGSCHHHHT--TSE
T ss_pred HHhhccccCCcEEEEECchhhcCHH--------------HHHHHHHHhc--CCCCCeEEEEEeCChHhCcHHHhh--cce
Confidence 65432 3579999999988543 6788888888 456678888889999999999999 664
Q ss_pred ceecCCCCCHHHHHHHHHHHHccCCCCChhhHHHHHhhCCCCcHHHHHHHHHHH
Q 003795 581 RKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVA 634 (795)
Q Consensus 581 ~~I~~~~Pd~~eR~~Il~~~l~~~~~~~d~dl~~LA~~t~G~sgadL~~lv~~A 634 (795)
.+.|++|+.++...++.... . .++..+..++..+.|.. +.+.++++.+
T Consensus 161 -~~~~~~~~~~~~~~~L~~~~---~-~~~~~~~~l~~~s~G~~-r~a~~~l~~~ 208 (334)
T 1a5t_A 161 -LHYLAPPPEQYAVTWLSREV---T-MSQDALLAALRLSAGSP-GAALALFQGD 208 (334)
T ss_dssp -EEECCCCCHHHHHHHHHHHC---C-CCHHHHHHHHHHTTTCH-HHHHHTTSSH
T ss_pred -eeeCCCCCHHHHHHHHHHhc---C-CCHHHHHHHHHHcCCCH-HHHHHHhccc
Confidence 79999999999999998765 2 23445667787776644 4444554443
No 80
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.11 E-value=1.2e-10 Score=136.97 Aligned_cols=131 Identities=20% Similarity=0.330 Sum_probs=88.4
Q ss_pred CCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcc-------------------cCCCcEEEEeccCCC--CC
Q 003795 510 APSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGF-------------------EGRGNVITIASTNRP--DI 568 (795)
Q Consensus 510 ~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~-------------------~~~~~VlVIatTN~~--d~ 568 (795)
.++++||||++.+.+. .++.|+..|+.. .-..++.||++||.. +.
T Consensus 201 ~~gvL~LDEi~~l~~~--------------~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~p~~~~vI~atn~~~~~~ 266 (604)
T 3k1j_A 201 HKGVLFIDEIATLSLK--------------MQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPCDFVLVAAGNLDTVDK 266 (604)
T ss_dssp TTSEEEETTGGGSCHH--------------HHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCEECCCEEEEEECHHHHHH
T ss_pred CCCEEEEechhhCCHH--------------HHHHHHHHHHcCcEEecccccccccccCCCCccceeEEEEEecCHHHHhh
Confidence 4679999999987443 566666666521 112468899999976 67
Q ss_pred CCccccCCCccc---ceecCCC--C-CHHHHHHHHHHHHcc------CCCCChhhHHHHHhh---CCCC------cHHHH
Q 003795 569 LDPALVRPGRFD---RKIFIPK--P-GLIGRMEILKVHARK------KPMADDVDYLAVASM---TDGM------VGAEL 627 (795)
Q Consensus 569 LdpaLlrpgRFd---~~I~~~~--P-d~~eR~~Il~~~l~~------~~~~~d~dl~~LA~~---t~G~------sgadL 627 (795)
++|+|++ ||+ ..+.|+. + +.+....+++..... ....++..+..+... ..|. +.+++
T Consensus 267 l~~~l~~--R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li~~~~r~~g~r~~l~~~~R~l 344 (604)
T 3k1j_A 267 MHPALRS--RIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIVREAQKRAGRKGHLTLRLRDL 344 (604)
T ss_dssp SCHHHHH--HHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHHHHHHHHTTCSTTEEECCHHHH
T ss_pred cCHHHHH--HhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHHHHHHHHHHHhhhhccccccccCHHHH
Confidence 9999999 986 4556543 2 334455555433321 111222234444432 3553 78999
Q ss_pred HHHHHHHHHHHHHcCCCccCHHHHHHHHH
Q 003795 628 ANIVEVAAINMMRDGRTEITTDDLLQAAQ 656 (795)
Q Consensus 628 ~~lv~~A~~~A~~~~~~~It~edl~~Al~ 656 (795)
.++++.|...|...++..|+.+|+.+|+.
T Consensus 345 ~~llr~A~~~A~~~~~~~I~~edv~~A~~ 373 (604)
T 3k1j_A 345 GGIVRAAGDIAVKKGKKYVEREDVIEAVK 373 (604)
T ss_dssp HHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcccccHHHHHHHHH
Confidence 99999999999888999999999999985
No 81
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=99.09 E-value=3e-10 Score=97.53 Aligned_cols=74 Identities=27% Similarity=0.478 Sum_probs=69.8
Q ss_pred CCCCHHHHHHHHHHHHccCCCCChhhHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHH
Q 003795 586 PKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEE 659 (795)
Q Consensus 586 ~~Pd~~eR~~Il~~~l~~~~~~~d~dl~~LA~~t~G~sgadL~~lv~~A~~~A~~~~~~~It~edl~~Al~~~~ 659 (795)
|+|+.++|.+||+.|+++.++..++|+..||..|.||||+||.++|++|+..|.+++...|+.+||..|+....
T Consensus 1 plPd~~~R~~Il~~~l~~~~~~~~~dl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~d~~~Al~~v~ 74 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVM 74 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEECTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998888999999999999999999999999999999999999999999999987543
No 82
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.08 E-value=1.8e-09 Score=119.25 Aligned_cols=223 Identities=16% Similarity=0.131 Sum_probs=138.1
Q ss_pred cCccCchHHHHHHHHHH-HhccccccccccCcccCCceEE--ECCCCCchhHHHHHhhhhc---------cccEEEeecc
Q 003795 418 SDVAGLGKIRLELEEIV-KFFTHGEMYRRRGVRIPGGILL--CGPPGVGKTLLAKAVAGEA---------GVNFFSISAS 485 (795)
Q Consensus 418 ~~~~gl~~~~~~l~~lv-~~~~~~~~~~~~gl~i~~giLL--~GPpGtGKTtLakaLA~el---------~~~~~~is~s 485 (795)
....|-++.+..+.... ...... . ...+..++| +||+|+|||+|++.++..+ +..++.+++.
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~-----~-~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSG-----A-GLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAF 95 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTS-----S-CBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGG
T ss_pred CCCCChHHHHHHHHHHHhHHHhcC-----C-CCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECC
Confidence 45666676666666655 322110 0 012334788 9999999999999999876 3456777764
Q ss_pred ceehh---------hhcc-------chhh-HHhHHHHHH-hcCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHh
Q 003795 486 QFVEI---------YVGV-------GASR-VRSLYQEAK-DNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVC 547 (795)
Q Consensus 486 e~~~~---------~~g~-------~~~~-l~~lf~~ar-~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ 547 (795)
..... .+|. .... ...+..... ...|.+++|||++.+..... . ....+..++..
T Consensus 96 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~-----~---~~~~l~~l~~~ 167 (412)
T 1w5s_A 96 NAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPR-----I---AAEDLYTLLRV 167 (412)
T ss_dssp GCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTT-----S---CHHHHHHHHTH
T ss_pred CCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccC-----c---chHHHHHHHHH
Confidence 32211 0111 1111 122222222 24577999999999854210 0 11245555555
Q ss_pred hhccc-CC--CcEEEEeccCCCC---CCC---ccccCCCcccceecCCCCCHHHHHHHHHHHHccC---CCCChhhHHHH
Q 003795 548 LDGFE-GR--GNVITIASTNRPD---ILD---PALVRPGRFDRKIFIPKPGLIGRMEILKVHARKK---PMADDVDYLAV 615 (795)
Q Consensus 548 ld~~~-~~--~~VlVIatTN~~d---~Ld---paLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~---~~~~d~dl~~L 615 (795)
+.... .. .++.+|++||.++ .++ +.+.+ +|...+.+++++.++..+++..++... ...++.....+
T Consensus 168 ~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~--~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i 245 (412)
T 1w5s_A 168 HEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVES--QIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELI 245 (412)
T ss_dssp HHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHH
T ss_pred HHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhh--hcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHH
Confidence 54332 13 6788888887665 234 55556 565569999999999999998766432 12233446677
Q ss_pred HhhCC------CCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHH
Q 003795 616 ASMTD------GMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQI 657 (795)
Q Consensus 616 A~~t~------G~sgadL~~lv~~A~~~A~~~~~~~It~edl~~Al~~ 657 (795)
+..+. | .++.+..++..|...+...+...++.+++..++..
T Consensus 246 ~~~~~~~~~~~G-~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~ 292 (412)
T 1w5s_A 246 SDVYGEDKGGDG-SARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSE 292 (412)
T ss_dssp HHHHCGGGTSCC-CHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHH
T ss_pred HHHHHHhccCCC-cHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 77777 5 46677788888887787778888999999888764
No 83
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=99.04 E-value=4.3e-10 Score=98.62 Aligned_cols=76 Identities=25% Similarity=0.429 Sum_probs=70.8
Q ss_pred cCCCCCHHHHHHHHHHHHccCCCCChhhHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHH
Q 003795 584 FIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEE 659 (795)
Q Consensus 584 ~~~~Pd~~eR~~Il~~~l~~~~~~~d~dl~~LA~~t~G~sgadL~~lv~~A~~~A~~~~~~~It~edl~~Al~~~~ 659 (795)
.-.+||.++|.+||+.++++.++.+++|+..||..|.||||+||.++|++|+..|.+++...|+.+||..|+....
T Consensus 7 ~~~~Pd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~T~G~SGADL~~l~~eAa~~alr~~~~~I~~~df~~Al~~v~ 82 (86)
T 2krk_A 7 HHSHPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVM 82 (86)
T ss_dssp CCCCCCHHHHHHHHHHHTTTSEECTTCCCHHHHHTCSSCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4468999999999999999998888999999999999999999999999999999999999999999999987553
No 84
>3ljc_A ATP-dependent protease LA; LON N-domain, allosteric enzyme, ATP-binding, DNA-binding, H nucleotide-binding, serine protease, stress respo; 2.60A {Escherichia coli}
Probab=99.01 E-value=2.6e-10 Score=119.56 Aligned_cols=152 Identities=18% Similarity=0.342 Sum_probs=124.4
Q ss_pred hhhhcccccccceeecccCCccccccccceEEeecCcceeeeccCCcccc-hhhhhcccccccccccccccCCCCCCCCC
Q 003795 127 TEIFSLKDEGKLKHVIKSPSGSLRQKAEPVLVVLEDSRVLRTVLPSLDSN-RKFWESWDELKIDSLCVNAYTPPLKKPEV 205 (795)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (795)
.++++++++++|.++.++|||+++..++|+ -|..|-++... ..|++.-+.+. +++....+.
T Consensus 73 ~~l~~vGt~a~I~~~~~lpdG~~~v~v~G~---------~R~rI~~~~~~~~~~~a~ve~l~---------d~~~~~~e~ 134 (252)
T 3ljc_A 73 NDLFTVGTVASILQMLKLPDGTVKVLVEGL---------QRARISALSDNGEHFSAKAEYLE---------SPTIDEREQ 134 (252)
T ss_dssp SSBCSEEEEEEECCCBCCTTSCEEEEEEEE---------EEEECSEEEEETTEEEEECCCCC---------CCCSCHHHH
T ss_pred cchhheeEEEEEEEEEECCCCeEEEEEEEE---------EEEEEEEEEcCCCcEEEEEEeec---------CCCCCChHH
Confidence 679999999999999999999999999999 88888776654 33333322221 011111122
Q ss_pred CC----------cccccccccCcccccccCCCchhhHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 003795 206 PN----------PYLGFLWRVPASMLSTFRPKKESKRAAEIRRAREELKRQRKEELEKMREESEMMEKAMDMQKKEEERR 275 (795)
Q Consensus 206 ~~----------~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~k~eld~~~~~~~~le~e~~~l~~e~~~~ 275 (795)
.. .|+....++|.+++..+.+++.|..|+|.+|+.+.++..+||+|.+...-..+++.-...|.+|.+.+
T Consensus 135 ~al~~~l~~~~~~~~~l~~~~~~e~~~~~~~~~dp~~Lad~ia~~l~l~~~eKQ~LLe~~d~~~Rl~~l~~lL~~e~e~~ 214 (252)
T 3ljc_A 135 EVLVRTAISQFEGYIKLNKKIPPEVLTSLNSIDDPARLADTIAAHMPLKLADKQSVLEMSDVNERLEYLMAMMESEIDLL 214 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHCSSCHHHHHHTTSCCCHHHHHHHHHHTSCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccCCHHHHHHHHccCCHHHHHHHHHHhCCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence 11 45566788899888888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 003795 276 RKKEIRLQKYEESLQDARDNY 296 (795)
Q Consensus 276 ~~~~~rl~~l~~el~~l~~~~ 296 (795)
+.+++...++++++++.|++|
T Consensus 215 ~l~~~I~~~v~~~~~k~Qrey 235 (252)
T 3ljc_A 215 QVEKRIRNRVKKQMEKSQREY 235 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 988888899999999999998
No 85
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=98.98 E-value=1.3e-09 Score=117.50 Aligned_cols=124 Identities=14% Similarity=0.145 Sum_probs=96.8
Q ss_pred CceEEECCCCCchhHHHHHhhhhc------cccEEEeeccceehhhhccchhhHHhHHHHHHhcC----CceeEhHHHHH
Q 003795 452 GGILLCGPPGVGKTLLAKAVAGEA------GVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNA----PSVVFIDELDA 521 (795)
Q Consensus 452 ~giLL~GPpGtGKTtLakaLA~el------~~~~~~is~se~~~~~~g~~~~~l~~lf~~ar~~~----p~Il~IDEID~ 521 (795)
..++|+||+|+|||++++++|..+ .+++..++.+.. ..+...++.+.+.+...+ ..|++|||+|.
T Consensus 19 ~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~-----~~~id~ir~li~~~~~~p~~~~~kvviIdead~ 93 (305)
T 2gno_A 19 ISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGE-----NIGIDDIRTIKDFLNYSPELYTRKYVIVHDCER 93 (305)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSS-----CBCHHHHHHHHHHHTSCCSSSSSEEEEETTGGG
T ss_pred cEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcC-----CCCHHHHHHHHHHHhhccccCCceEEEeccHHH
Confidence 358999999999999999999863 456666665420 112334677777776433 36999999998
Q ss_pred HhhhccCCCCCCcchHHHHHHHHHHhhhcccCCCcEEEEeccCCCCCCCccccCCCcccceecCCCCCHHHHHHHHHHHH
Q 003795 522 VGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHA 601 (795)
Q Consensus 522 l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVIatTN~~d~LdpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l 601 (795)
+... ..+.|+..|+ ....++++|.+||.+..+.|++++ | .+.|++|+.++....+...+
T Consensus 94 lt~~--------------a~naLLk~LE--ep~~~t~fIl~t~~~~kl~~tI~S--R---~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 94 MTQQ--------------AANAFLKALE--EPPEYAVIVLNTRRWHYLLPTIKS--R---VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp BCHH--------------HHHHTHHHHH--SCCTTEEEEEEESCGGGSCHHHHT--T---SEEEECCCCHHHHHHHHHHH
T ss_pred hCHH--------------HHHHHHHHHh--CCCCCeEEEEEECChHhChHHHHc--e---eEeCCCCCHHHHHHHHHHHh
Confidence 8544 6788999998 556678888888889999999999 7 89999999999999988776
No 86
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.98 E-value=3.8e-10 Score=107.81 Aligned_cols=110 Identities=12% Similarity=0.120 Sum_probs=74.1
Q ss_pred cCchHHHHHHHHHHHhccccccccccCcccCCceEEECCCCCchhHHHHHhhhhc---cccEEEeeccceehhhhccchh
Q 003795 421 AGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEIYVGVGAS 497 (795)
Q Consensus 421 ~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el---~~~~~~is~se~~~~~~g~~~~ 497 (795)
.|....+..+.+.+..+. ..+..++|+||||||||++|++|+... +.+++ ++++.+... .
T Consensus 4 iG~s~~~~~~~~~~~~~a----------~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~------~ 66 (145)
T 3n70_A 4 IGRSEWINQYRRRLQQLS----------ETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA------P 66 (145)
T ss_dssp CCSSHHHHHHHHHHHHHT----------TCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS------S
T ss_pred eeCCHHHHHHHHHHHHHh----------CCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc------h
Confidence 455556655555554432 122348999999999999999999876 67888 988865433 2
Q ss_pred hHHhHHHHHHhcCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcccCCCcEEEEeccCCC
Q 003795 498 RVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRP 566 (795)
Q Consensus 498 ~l~~lf~~ar~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVIatTN~~ 566 (795)
.....++.+ .++++||||||.+... ....|+..+. ....++.+|++||.+
T Consensus 67 ~~~~~~~~a---~~g~l~ldei~~l~~~--------------~q~~Ll~~l~--~~~~~~~~I~~t~~~ 116 (145)
T 3n70_A 67 QLNDFIALA---QGGTLVLSHPEHLTRE--------------QQYHLVQLQS--QEHRPFRLIGIGDTS 116 (145)
T ss_dssp CHHHHHHHH---TTSCEEEECGGGSCHH--------------HHHHHHHHHH--SSSCSSCEEEEESSC
T ss_pred hhhcHHHHc---CCcEEEEcChHHCCHH--------------HHHHHHHHHh--hcCCCEEEEEECCcC
Confidence 233345544 3468999999988544 4556666664 334567788888864
No 87
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=98.91 E-value=2.7e-09 Score=93.86 Aligned_cols=73 Identities=23% Similarity=0.404 Sum_probs=67.5
Q ss_pred CHHHHHHHHHHHHccCCCCChhhHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHHhc
Q 003795 589 GLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEERG 661 (795)
Q Consensus 589 d~~eR~~Il~~~l~~~~~~~d~dl~~LA~~t~G~sgadL~~lv~~A~~~A~~~~~~~It~edl~~Al~~~~~~ 661 (795)
|.++|.+||+.|+++.++.+++|+..||..|+||||+||.++|++|+..|.+++...|+.+||..|+.....+
T Consensus 2 d~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~SGADl~~l~~eAa~~a~r~~~~~i~~~df~~Al~~v~~~ 74 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDKVISG 74 (88)
T ss_dssp CSSHHHHHHHHHHTTSCBCSCCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHSCSSBCHHHHHHHHHHHTC-
T ss_pred CHHHHHHHHHHHHCCCCCCCccCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHhcC
Confidence 5678999999999999998999999999999999999999999999999999999999999999999865543
No 88
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=98.86 E-value=1.1e-09 Score=104.43 Aligned_cols=110 Identities=17% Similarity=0.200 Sum_probs=75.1
Q ss_pred cCchHHHHHHHHHHHhccccccccccCcccCCceEEECCCCCchhHHHHHhhhhccccEEEeeccceehhhhccchhhHH
Q 003795 421 AGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVR 500 (795)
Q Consensus 421 ~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~se~~~~~~g~~~~~l~ 500 (795)
.|....+..+.+.+..+. ..+.+++|+||||||||++|++|+.... +++.++++.+...+ ..
T Consensus 7 iG~s~~~~~l~~~~~~~~----------~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~~-------~~ 68 (143)
T 3co5_A 7 LGNSAAIQEMNREVEAAA----------KRTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLIDM-------PM 68 (143)
T ss_dssp -CCCHHHHHHHHHHHHHH----------TCSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHHC-------HH
T ss_pred eeCCHHHHHHHHHHHHHh----------CCCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChHh-------hh
Confidence 455666666666655432 1234599999999999999999999887 88889888754332 23
Q ss_pred hHHHHHHhcCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcccCCCcEEEEeccCCC
Q 003795 501 SLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRP 566 (795)
Q Consensus 501 ~lf~~ar~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVIatTN~~ 566 (795)
.+++.+ .++++||||++.+... ....|+..++... ..++.+|++||.+
T Consensus 69 ~~~~~a---~~~~l~lDei~~l~~~--------------~q~~Ll~~l~~~~-~~~~~iI~~tn~~ 116 (143)
T 3co5_A 69 ELLQKA---EGGVLYVGDIAQYSRN--------------IQTGITFIIGKAE-RCRVRVIASCSYA 116 (143)
T ss_dssp HHHHHT---TTSEEEEEECTTCCHH--------------HHHHHHHHHHHHT-TTTCEEEEEEEEC
T ss_pred hHHHhC---CCCeEEEeChHHCCHH--------------HHHHHHHHHHhCC-CCCEEEEEecCCC
Confidence 345443 3569999999988544 4455555555322 4567888888864
No 89
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=98.82 E-value=5e-09 Score=133.76 Aligned_cols=155 Identities=19% Similarity=0.188 Sum_probs=103.6
Q ss_pred cCccccccCccCchHHHHHHHHHHHhcc-----------ccccccc------cCcc----------cCCc--eEEECCCC
Q 003795 411 RGVDVKFSDVAGLGKIRLELEEIVKFFT-----------HGEMYRR------RGVR----------IPGG--ILLCGPPG 461 (795)
Q Consensus 411 ~~~~~~f~~~~gl~~~~~~l~~lv~~~~-----------~~~~~~~------~gl~----------i~~g--iLL~GPpG 461 (795)
++....|.++.|+...+..+.+.+.+.- .+..+.. .|.. +|+| ++++||||
T Consensus 1013 ~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g 1092 (1706)
T 3cmw_A 1013 SASGSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPES 1092 (1706)
T ss_dssp -----------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTT
T ss_pred ccCCceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCC
Confidence 4566889999999999988887776532 1233443 4444 6667 99999999
Q ss_pred CchhHHHHHhhhhc---cccEEEeecccee------------hhhhcc----chhhHHhHHHHHHhcCCceeEhHHHHHH
Q 003795 462 VGKTLLAKAVAGEA---GVNFFSISASQFV------------EIYVGV----GASRVRSLYQEAKDNAPSVVFIDELDAV 522 (795)
Q Consensus 462 tGKTtLakaLA~el---~~~~~~is~se~~------------~~~~g~----~~~~l~~lf~~ar~~~p~Il~IDEID~l 522 (795)
||||+||++++.+. +-+.+.|+..+.. +.+++. ++..++.+|..++...||++++|+++++
T Consensus 1093 ~GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~d~~~al 1172 (1706)
T 3cmw_A 1093 SGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAAL 1172 (1706)
T ss_dssp SSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGC
T ss_pred CChHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEEEeCchHhc
Confidence 99999999999865 4455566666544 334455 5677888998899999999999999999
Q ss_pred hhhccC---CCCCCcchHHHHHHHHHHhhhcccCCCcEEEEeccCCC
Q 003795 523 GRERGL---IKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRP 566 (795)
Q Consensus 523 ~~~r~~---~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVIatTN~~ 566 (795)
.+.+.. .++....-....++++|..+++.....+|+|| +||+.
T Consensus 1173 ~~~~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~~~~v~v~-~~n~~ 1218 (1706)
T 3cmw_A 1173 TPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLI-FINQI 1218 (1706)
T ss_dssp CCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHTTCEEE-EEECE
T ss_pred CcccccccccccccccHHHHHHHHHHHHHHhhhccCCeEEE-Eeccc
Confidence 877432 11111123344789999999988777888888 66664
No 90
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=98.76 E-value=1.2e-08 Score=88.52 Aligned_cols=71 Identities=17% Similarity=0.234 Sum_probs=66.5
Q ss_pred CHHHHHHHHHHHHccCCCCChhhHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHH
Q 003795 589 GLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIEE 659 (795)
Q Consensus 589 d~~eR~~Il~~~l~~~~~~~d~dl~~LA~~t~G~sgadL~~lv~~A~~~A~~~~~~~It~edl~~Al~~~~ 659 (795)
|.++|.+||+.|+++.++.+++|+..||..|.||||+||.++|++|+..|.+++...|+.+||..|+....
T Consensus 2 d~~~R~~Il~~~l~~~~~~~~vdl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~df~~Al~~~~ 72 (83)
T 3aji_B 2 DRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFEKAYKTVI 72 (83)
T ss_dssp CHHHHHHHHHHHHTTSCBCTTCCTHHHHTSSCCCCHHHHHHHHHHHHHGGGTSCCSSBCHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHhCCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHc
Confidence 67899999999999998888999999999999999999999999999999999988999999999988654
No 91
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.73 E-value=1.1e-08 Score=135.70 Aligned_cols=138 Identities=23% Similarity=0.365 Sum_probs=93.5
Q ss_pred CCceEEECCCCCchhHHH-HHhhhhccccEEEeeccceehhhhccchhhHHhHHHHHH---------------hcCCcee
Q 003795 451 PGGILLCGPPGVGKTLLA-KAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAK---------------DNAPSVV 514 (795)
Q Consensus 451 ~~giLL~GPpGtGKTtLa-kaLA~el~~~~~~is~se~~~~~~g~~~~~l~~lf~~ar---------------~~~p~Il 514 (795)
.+++||+||||||||++| ++++...+..+..++++...+. ..+...++... ...++|+
T Consensus 1267 ~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts~------~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~Vl 1340 (2695)
T 4akg_A 1267 KRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTTT------EHILSALHRHTNYVTTSKGLTLLPKSDIKNLVL 1340 (2695)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCCH------HHHHHHHHHHBCCEEETTTEEEEEBSSSSCEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCCH------HHHHHHHHHHhhhccccCCccccCCCCCceEEE
Confidence 456999999999999999 5555555667777777654322 22333333321 1123699
Q ss_pred EhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcccCC--------CcEEEEeccCCCC-----CCCccccCCCcccc
Q 003795 515 FIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGR--------GNVITIASTNRPD-----ILDPALVRPGRFDR 581 (795)
Q Consensus 515 ~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~--------~~VlVIatTN~~d-----~LdpaLlrpgRFd~ 581 (795)
||||++....++ .|.+.....+.+++. ..++... .++.+|+|||++. .|+|+|+| || .
T Consensus 1341 FiDEinmp~~d~-----yg~q~~lelLRq~le-~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllR--rf-~ 1411 (2695)
T 4akg_A 1341 FCDEINLPKLDK-----YGSQNVVLFLRQLME-KQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTR--HA-A 1411 (2695)
T ss_dssp EEETTTCSCCCS-----SSCCHHHHHHHHHHH-TSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHT--TE-E
T ss_pred Eecccccccccc-----cCchhHHHHHHHHHh-cCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhh--ee-e
Confidence 999997643221 233444455555552 2222211 3589999999995 79999999 88 6
Q ss_pred eecCCCCCHHHHHHHHHHHHcc
Q 003795 582 KIFIPKPGLIGRMEILKVHARK 603 (795)
Q Consensus 582 ~I~~~~Pd~~eR~~Il~~~l~~ 603 (795)
++.++.|+.+++..|+..+++.
T Consensus 1412 vi~i~~P~~~~l~~I~~~il~~ 1433 (2695)
T 4akg_A 1412 ILYLGYPSGKSLSQIYEIYYKA 1433 (2695)
T ss_dssp EEECCCCTTTHHHHHHHHHHHH
T ss_pred EEEeCCCCHHHHHHHHHHHHHH
Confidence 8999999999999999987754
No 92
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=98.61 E-value=1.6e-08 Score=87.65 Aligned_cols=68 Identities=26% Similarity=0.324 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHccCCCCChhhHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHH
Q 003795 591 IGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQIE 658 (795)
Q Consensus 591 ~eR~~Il~~~l~~~~~~~d~dl~~LA~~t~G~sgadL~~lv~~A~~~A~~~~~~~It~edl~~Al~~~ 658 (795)
++|.+||+.|+++.++.+++|+..||..|.||||+||.++|++|+..|.+++...|+.+||..|+...
T Consensus 1 ~~R~~Il~~~l~~~~~~~~vdl~~lA~~t~G~SGADi~~l~~eAa~~ai~~~~~~i~~~df~~Al~~v 68 (82)
T 2dzn_B 1 MERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDLEEAYATQ 68 (82)
T ss_dssp -------------CEECTTCCSTTTTTSSCCCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTT
T ss_pred CHHHHHHHHHHcCCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHH
Confidence 46899999999998888889999999999999999999999999999999999999999999998754
No 93
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.58 E-value=3.5e-08 Score=97.05 Aligned_cols=102 Identities=19% Similarity=0.218 Sum_probs=58.0
Q ss_pred CCceEEECCCCCchhHHHHHhhhhc----cccEEEeeccceehhhhccchh-hHHhHHHHHHhcCCceeEhHHHHHHhhh
Q 003795 451 PGGILLCGPPGVGKTLLAKAVAGEA----GVNFFSISASQFVEIYVGVGAS-RVRSLYQEAKDNAPSVVFIDELDAVGRE 525 (795)
Q Consensus 451 ~~giLL~GPpGtGKTtLakaLA~el----~~~~~~is~se~~~~~~g~~~~-~l~~lf~~ar~~~p~Il~IDEID~l~~~ 525 (795)
..+++|+||||+|||||+++|++.+ +..++.++..++...+...... ....+.... ..|.+++|||++...
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~llilDE~~~~~-- 113 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFRLKHLMDEGKDTKFLKTV--LNSPVLVLDDLGSER-- 113 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHHHHHHHHHTCCSHHHHHH--HTCSEEEEETCSSSC--
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHhcCchHHHHHHHh--cCCCEEEEeCCCCCc--
Confidence 4559999999999999999999977 4455666666654432211000 001222222 257799999986431
Q ss_pred ccCCCCCCcchHHHHHHHHHHhhhcccCCCcEEEEeccCCCC
Q 003795 526 RGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPD 567 (795)
Q Consensus 526 r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVIatTN~~d 567 (795)
........+..++.... . .+..+|.+||.+.
T Consensus 114 -------~~~~~~~~l~~ll~~~~---~-~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 114 -------LSDWQRELISYIITYRY---N-NLKSTIITTNYSL 144 (180)
T ss_dssp -------CCHHHHHHHHHHHHHHH---H-TTCEEEEECCCCS
T ss_pred -------CCHHHHHHHHHHHHHHH---H-cCCCEEEEcCCCh
Confidence 11223334444443332 1 2345666777653
No 94
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.54 E-value=2.5e-08 Score=96.10 Aligned_cols=55 Identities=24% Similarity=0.287 Sum_probs=41.4
Q ss_pred ceEEECCCCCchhHHHHHhhhhc---cccEEEeeccceehhhhccchhhHHhHHHHHHhcCCceeEhHHHHHH
Q 003795 453 GILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAV 522 (795)
Q Consensus 453 giLL~GPpGtGKTtLakaLA~el---~~~~~~is~se~~~~~~g~~~~~l~~lf~~ar~~~p~Il~IDEID~l 522 (795)
.++|+||||+|||||++++++.+ +...++++..++... .....|.+++|||++.+
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~---------------~~~~~~~lLilDE~~~~ 95 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT---------------DAAFEAEYLAVDQVEKL 95 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC---------------GGGGGCSEEEEESTTCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH---------------HHHhCCCEEEEeCcccc
Confidence 48999999999999999999977 555677776654432 01234779999998764
No 95
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.53 E-value=3.5e-07 Score=103.04 Aligned_cols=185 Identities=16% Similarity=0.141 Sum_probs=109.8
Q ss_pred ceEEECCCCCchhHHHHHh-hhhccccEEEeeccc-----eehhhhccchhhH-HhHHHHHHhcCCceeEhHHHHHHhhh
Q 003795 453 GILLCGPPGVGKTLLAKAV-AGEAGVNFFSISASQ-----FVEIYVGVGASRV-RSLYQEAKDNAPSVVFIDELDAVGRE 525 (795)
Q Consensus 453 giLL~GPpGtGKTtLakaL-A~el~~~~~~is~se-----~~~~~~g~~~~~l-~~lf~~ar~~~p~Il~IDEID~l~~~ 525 (795)
++||.|+||+ ||+|++++ ++.+....+ ..... +.....+.+...+ ...+..| ..+++|+|||+.+...
T Consensus 241 hVLL~G~PGt-KS~Lar~i~~~i~pR~~f-t~g~~ss~~gLt~s~r~~tG~~~~~G~l~LA---dgGvl~lDEIn~~~~~ 315 (506)
T 3f8t_A 241 HVLLAGYPVV-CSEILHHVLDHLAPRGVY-VDLRRTELTDLTAVLKEDRGWALRAGAAVLA---DGGILAVDHLEGAPEP 315 (506)
T ss_dssp CEEEESCHHH-HHHHHHHHHHHTCSSEEE-EEGGGCCHHHHSEEEEESSSEEEEECHHHHT---TTSEEEEECCTTCCHH
T ss_pred eEEEECCCCh-HHHHHHHHHHHhCCCeEE-ecCCCCCccCceEEEEcCCCcccCCCeeEEc---CCCeeehHhhhhCCHH
Confidence 4999999999 99999999 766544322 22110 0000000000000 0112222 2469999999887554
Q ss_pred ccCCCCCCcchHHHHHHHHHHhhhcc-------cCCCcEEEEeccCCCC-----------CCCccccCCCcccceec-CC
Q 003795 526 RGLIKGSGGQERDATLNQLLVCLDGF-------EGRGNVITIASTNRPD-----------ILDPALVRPGRFDRKIF-IP 586 (795)
Q Consensus 526 r~~~~~Sgge~~r~~l~~LL~~ld~~-------~~~~~VlVIatTN~~d-----------~LdpaLlrpgRFd~~I~-~~ 586 (795)
++..|+..|+.- .-+.++.||+|+|... .|++++++ |||..+. ++
T Consensus 316 --------------~qsaLlEaMEe~~VtI~G~~lparf~VIAA~NP~~~yd~~~s~~~~~Lp~alLD--RFDLi~i~~d 379 (506)
T 3f8t_A 316 --------------HRWALMEAMDKGTVTVDGIALNARCAVLAAINPGEQWPSDPPIARIDLDQDFLS--HFDLIAFLGV 379 (506)
T ss_dssp --------------HHHHHHHHHHHSEEEETTEEEECCCEEEEEECCCC--CCSCGGGGCCSCHHHHT--TCSEEEETTC
T ss_pred --------------HHHHHHHHHhCCcEEECCEEcCCCeEEEEEeCcccccCCCCCccccCCChHHhh--heeeEEEecC
Confidence 677777776631 1235689999999865 78889999 9987553 45
Q ss_pred CCCHHHHH---------HHHH---HHHc-c--CCCCChhhHHHHH-----------h------hCCCCcHHHHHHHHHHH
Q 003795 587 KPGLIGRM---------EILK---VHAR-K--KPMADDVDYLAVA-----------S------MTDGMVGAELANIVEVA 634 (795)
Q Consensus 587 ~Pd~~eR~---------~Il~---~~l~-~--~~~~~d~dl~~LA-----------~------~t~G~sgadL~~lv~~A 634 (795)
.|+.+... +.++ .+.+ . .+..++.....+. . ..-|.|++.+..+++.|
T Consensus 380 ~pd~e~d~e~~~~~ls~e~L~~yi~~ar~~~~~p~ls~ea~~yI~~~y~~tR~~~~~~~~~~~~~~giSpR~leaLiRlA 459 (506)
T 3f8t_A 380 DPRPGEPEEQDTEVPSYTLLRRYLLYAIREHPAPELTEEARKRLEHWYETRREEVEERLGMGLPTLPVTRRQLESVERLA 459 (506)
T ss_dssp --------------CCHHHHHHHHHHHHHHCSCCEECHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHHH
T ss_pred CCChhHhhcccCCCCCHHHHHHHHHHHHhcCCCceeCHHHHHHHHHHHHHHhcCcccccccccccccccHHHHHHHHHHH
Confidence 55543311 1122 2223 1 1111111111110 0 24588999999999999
Q ss_pred HHHHHHcCCCccCHHHHHHHHHHH
Q 003795 635 AINMMRDGRTEITTDDLLQAAQIE 658 (795)
Q Consensus 635 ~~~A~~~~~~~It~edl~~Al~~~ 658 (795)
...|..+++..|+.+|+..|+...
T Consensus 460 ~A~A~L~gR~~V~~eDV~~Ai~L~ 483 (506)
T 3f8t_A 460 KAHARMRLSDDVEPEDVDIAAELV 483 (506)
T ss_dssp HHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHHHcCcCCCCHHHHHHHHHHH
Confidence 999999999999999999998844
No 96
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=98.46 E-value=5.3e-07 Score=100.12 Aligned_cols=179 Identities=21% Similarity=0.224 Sum_probs=107.6
Q ss_pred ceEEECCCCCchhHHHHHhhhhc---cccEEEeeccceehh-----hhccchh-------hHHhHHHHHHhcCCceeEhH
Q 003795 453 GILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEI-----YVGVGAS-------RVRSLYQEAKDNAPSVVFID 517 (795)
Q Consensus 453 giLL~GPpGtGKTtLakaLA~el---~~~~~~is~se~~~~-----~~g~~~~-------~l~~lf~~ar~~~p~Il~ID 517 (795)
.++|+|++|||||+++++|.... +.+|+.++|+.+... .+|...+ .....|+.+. .+++|||
T Consensus 162 ~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~~elfg~~~g~~tga~~~~~g~~~~a~---~gtlfld 238 (387)
T 1ny5_A 162 PVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSSKEGFFELAD---GGTLFLD 238 (387)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHHHHHHCBCTTSSTTCCSCBCCHHHHTT---TSEEEEE
T ss_pred CeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHHHHhcCCCCCCCCCcccccCCceeeCC---CcEEEEc
Confidence 37999999999999999998755 468999999886543 2222111 0123455443 4689999
Q ss_pred HHHHHhhhccCCCCCCcchHHHHHHHHHHhhhccc---------CCCcEEEEeccCCCC-------CCCccccCCCcccc
Q 003795 518 ELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE---------GRGNVITIASTNRPD-------ILDPALVRPGRFDR 581 (795)
Q Consensus 518 EID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~---------~~~~VlVIatTN~~d-------~LdpaLlrpgRFd~ 581 (795)
||+.+... .+..|+..++... ...++.||++||..- .+.+.|.. |+.
T Consensus 239 ei~~l~~~--------------~q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~~~~g~fr~dl~~--rl~- 301 (387)
T 1ny5_A 239 EIGELSLE--------------AQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELVKEGKFREDLYY--RLG- 301 (387)
T ss_dssp SGGGCCHH--------------HHHHHHHHHHHSEECCBTCCSBEECCCEEEEEESSCHHHHHHTTSSCHHHHH--HHT-
T ss_pred ChhhCCHH--------------HHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCCCCHHHHHHcCCccHHHHH--hhc-
Confidence 99988654 6667776665311 123678999998631 22333322 332
Q ss_pred eecCCCCCHHHH----HHHHHHHHcc----CCCC----ChhhHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCccCHH
Q 003795 582 KIFIPKPGLIGR----MEILKVHARK----KPMA----DDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTD 649 (795)
Q Consensus 582 ~I~~~~Pd~~eR----~~Il~~~l~~----~~~~----~d~dl~~LA~~t~G~sgadL~~lv~~A~~~A~~~~~~~It~e 649 (795)
.+.+..|...+| ..++.+++.. .... +..-+..+..+.--.+.++|.+++..|+..+ ....|+.+
T Consensus 302 ~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~l~~~~wpGNvreL~~~i~~~~~~~---~~~~i~~~ 378 (387)
T 1ny5_A 302 VIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSYPWYGNVRELKNVIERAVLFS---EGKFIDRG 378 (387)
T ss_dssp TEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHHHHHSCCTTHHHHHHHHHHHHHHHC---CSSEECHH
T ss_pred CCeecCCcchhccccHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCcHHHHHHHHHHHHHHhC---CCCcCcHH
Confidence 233445555544 3344444432 2111 2223445555554445679999999888654 33578888
Q ss_pred HHHHH
Q 003795 650 DLLQA 654 (795)
Q Consensus 650 dl~~A 654 (795)
|+-..
T Consensus 379 ~l~~~ 383 (387)
T 1ny5_A 379 ELSCL 383 (387)
T ss_dssp HHHHH
T ss_pred HCcHh
Confidence 88543
No 97
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.37 E-value=1.1e-07 Score=102.66 Aligned_cols=115 Identities=23% Similarity=0.250 Sum_probs=65.1
Q ss_pred eEEECCCCCchhHHHHHhhhhcccc--EEEeeccceehhhhccchhhHHhHHHHHHhcCCceeEhHHHHHHhhhccCCCC
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEAGVN--FFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKG 531 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el~~~--~~~is~se~~~~~~g~~~~~l~~lf~~ar~~~p~Il~IDEID~l~~~r~~~~~ 531 (795)
++|+||||+|||+|+..+|...+.. ++.+...+..+.+.......+..+.+.+.... +++||+++.+.......+.
T Consensus 126 iLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~--LLVIDsI~aL~~~~~~~s~ 203 (331)
T 2vhj_A 126 VIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR--VIVIDSLKNVIGAAGGNTT 203 (331)
T ss_dssp EEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS--EEEEECCTTTC--------
T ss_pred EEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC--EEEEecccccccccccccc
Confidence 7999999999999999999865433 44442233333333222233344555555543 9999999987543221111
Q ss_pred CCcchHHHHHHHHHHhhhcccCCCcEEEEeccCCCCCCCccc
Q 003795 532 SGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPAL 573 (795)
Q Consensus 532 Sgge~~r~~l~~LL~~ld~~~~~~~VlVIatTN~~d~LdpaL 573 (795)
.|.. ...+..++..|.++....++.+|+++| +...++++
T Consensus 204 ~G~v--~~~lrqlL~~L~~~~k~~gvtVIlttn-p~s~deal 242 (331)
T 2vhj_A 204 SGGI--SRGAFDLLSDIGAMAASRGCVVIASLN-PTSNDDKI 242 (331)
T ss_dssp ---C--CHHHHHHHHHHHHHHHHHTCEEEEECC-CSSCSSSH
T ss_pred cchH--HHHHHHHHHHHHHHHhhCCCEEEEEeC-CcccchhH
Confidence 1111 124455555555544455678888888 44555544
No 98
>3m65_A ATP-dependent protease LA 1; coiled-coil, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; 2.60A {Bacillus subtilis}
Probab=98.35 E-value=6.3e-08 Score=98.46 Aligned_cols=134 Identities=19% Similarity=0.264 Sum_probs=105.2
Q ss_pred chhhhcccccccceeecccCCccccccccceEEeecCcceeeeccCCcccc-hhhhhcccccccccccccccCCCCCCCC
Q 003795 126 YTEIFSLKDEGKLKHVIKSPSGSLRQKAEPVLVVLEDSRVLRTVLPSLDSN-RKFWESWDELKIDSLCVNAYTPPLKKPE 204 (795)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (795)
-.++|+++++++|+++.++|||+++..++|+ -|..+-++... ..+++.-+.+. +++....|
T Consensus 63 ~~~l~~vGt~a~I~~~~~l~dG~~~v~v~G~---------~R~ri~~~~~~~~~~~a~v~~~~---------~~~~~~~e 124 (209)
T 3m65_A 63 EDEIFTVGTYTKIKQMLKLPNGTIRVLVEGL---------KRAHIVKYNEHEDYTSVDIQLIH---------EDDSKDTE 124 (209)
T ss_dssp GGGBCSEEEEEEEEEEEECTTSCEEEEEEEE---------EEEEEEEEEECSSSEEEEEEECC---------CC--CCSH
T ss_pred cchhhheeEEEEEEEEEECCCCeEEEEEEEE---------EEEEEEEEEcCCCcEEEEEEEec---------CCCCCCHH
Confidence 3689999999999999999999999999999 78777766554 33443322221 11112223
Q ss_pred CCC----------cccccccccCcccccccCCCchhhHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 003795 205 VPN----------PYLGFLWRVPASMLSTFRPKKESKRAAEIRRAREELKRQRKEELEKMREESEMMEKAMDMQKKEEER 274 (795)
Q Consensus 205 ~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~k~eld~~~~~~~~le~e~~~l~~e~~~ 274 (795)
... .|+....++|++++..+.+++.|.+|+|.+|+++.++.++||+|.+...-..+++.-...|++|.+.
T Consensus 125 ~~al~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~dp~~lad~ia~~l~l~~~ekQ~lLe~~d~~~Rl~~l~~~L~~E~e~ 204 (209)
T 3m65_A 125 DEALMRTLLDHFDQYIKISKKISAETYAAVTDIEEPGRMADIVASHLPLKLKDKQDILETADVKDRLNKVIDFINNEKEV 204 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHSCCCHHHHHHHHTCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHccCCHHHHHHHHHHhCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 222 4666677788888888889999999999999999999999999999999999999999999988876
Q ss_pred HHH
Q 003795 275 RRK 277 (795)
Q Consensus 275 ~~~ 277 (795)
++.
T Consensus 205 ~~l 207 (209)
T 3m65_A 205 LEI 207 (209)
T ss_dssp HHH
T ss_pred Hhh
Confidence 543
No 99
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.28 E-value=2e-07 Score=103.20 Aligned_cols=122 Identities=21% Similarity=0.244 Sum_probs=73.1
Q ss_pred cccCcccCC--ceEEECCCCCchhHHHHHhhhhccccEEEeeccceehhhhccchhhHHhHHHHHHhcCCceeEhHHHHH
Q 003795 444 RRRGVRIPG--GILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDA 521 (795)
Q Consensus 444 ~~~gl~i~~--giLL~GPpGtGKTtLakaLA~el~~~~~~is~se~~~~~~g~~~~~l~~lf~~ar~~~p~Il~IDEID~ 521 (795)
.++.+.++. .++|+||||+|||||+++|++..+..++.+.... ..+ ...+..+| ...++++|+++.
T Consensus 160 ~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~--~~~----~~~lg~~~------q~~~~l~dd~~~ 227 (377)
T 1svm_A 160 KCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPL--DRL----NFELGVAI------DQFLVVFEDVKG 227 (377)
T ss_dssp HHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCT--TTH----HHHHGGGT------TCSCEEETTCCC
T ss_pred HhcccccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccc--hhH----HHHHHHhc------chhHHHHHHHHH
Confidence 333344444 4999999999999999999998765444322211 000 00111122 234678999987
Q ss_pred Hhh-hccCCCCCCcchHHHHHHHHHHhhhcccCCCcEEEEeccCCCCCCCccccCCCcccceecCCC
Q 003795 522 VGR-ERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPK 587 (795)
Q Consensus 522 l~~-~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVIatTN~~d~LdpaLlrpgRFd~~I~~~~ 587 (795)
+.. .+.... +... .....+...+++ ++.|+.+||+++.+ +++++|||++..++...
T Consensus 228 ~~~~~r~l~~---~~~~-~~~~~l~~~ldG-----~v~v~~~tn~~~~l-~alf~pg~ld~~~~~l~ 284 (377)
T 1svm_A 228 TGGESRDLPS---GQGI-NNLDNLRDYLDG-----SVKVNLEKKHLNKR-TQIFPPGIVTMNEYSVP 284 (377)
T ss_dssp STTTTTTCCC---CSHH-HHHHTTHHHHHC-----SSCEEECCSSSCCE-EECCCCEEEEECSCCCC
T ss_pred HHHHHhhccc---cCcc-hHHHHHHHHhcC-----CCeEeeccCchhhH-HHhhcCcccChhHHhhc
Confidence 754 222111 1111 122333344443 35678889999999 89999999998887755
No 100
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.19 E-value=1.9e-07 Score=93.24 Aligned_cols=69 Identities=26% Similarity=0.327 Sum_probs=46.0
Q ss_pred CceEEECCCCCchhHHHHHhhhhc---cccEEEeeccceehhhhccc-hhhHHhHHHHHHhcCCceeEhHHHHHH
Q 003795 452 GGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEIYVGVG-ASRVRSLYQEAKDNAPSVVFIDELDAV 522 (795)
Q Consensus 452 ~giLL~GPpGtGKTtLakaLA~el---~~~~~~is~se~~~~~~g~~-~~~l~~lf~~ar~~~p~Il~IDEID~l 522 (795)
.+++|+||+|||||+|++++++.+ +.+++.+++.++........ ...+..++..... +++++|||++..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~lilDei~~~ 127 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRELKHSLQDQTMNEKLDYIKK--VPVLMLDDLGAE 127 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHC---CCCHHHHHHHHH--SSEEEEEEECCC
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHHHHHHHhccchHHHHHHHhcC--CCEEEEcCCCCC
Confidence 679999999999999999999877 56777788776554322110 1112233333332 359999999553
No 101
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=98.18 E-value=3.4e-06 Score=93.01 Aligned_cols=189 Identities=18% Similarity=0.244 Sum_probs=106.9
Q ss_pred ccCchHHHHHHHHHHHhccccccccccCcccCCceEEECCCCCchhHHHHHhhhhccc--cEEEeeccceehh-----hh
Q 003795 420 VAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEAGV--NFFSISASQFVEI-----YV 492 (795)
Q Consensus 420 ~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el~~--~~~~is~se~~~~-----~~ 492 (795)
..|.......+...+..+.. ....++++|++||||++++++|....+. .|+.++|+.+... .+
T Consensus 131 ~ig~s~~~~~~~~~~~~~a~----------~~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~lf 200 (368)
T 3dzd_A 131 FVGEHPKILEIKRLIPKIAK----------SKAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESELF 200 (368)
T ss_dssp CCCCSHHHHHHHHHHHHHHT----------SCSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHHHH
T ss_pred ccccchHHHHHHhhhhhhhc----------cchhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHHhc
Confidence 34555555555555443321 1123899999999999999999876533 2999999875433 22
Q ss_pred ccchhh-------HHhHHHHHHhcCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhccc-----C----CCc
Q 003795 493 GVGASR-------VRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE-----G----RGN 556 (795)
Q Consensus 493 g~~~~~-------l~~lf~~ar~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~-----~----~~~ 556 (795)
|...+. -...|+.+ ..+.+|||||+.+... .+..|+..++.-. . ..+
T Consensus 201 g~~~g~~tga~~~~~g~~~~a---~~gtlfldei~~l~~~--------------~Q~~Ll~~l~~~~~~~~g~~~~~~~~ 263 (368)
T 3dzd_A 201 GHEKGAFTGALTRKKGKLELA---DQGTLFLDEVGELDQR--------------VQAKLLRVLETGSFTRLGGNQKIEVD 263 (368)
T ss_dssp EECSCSSSSCCCCEECHHHHT---TTSEEEEETGGGSCHH--------------HHHHHHHHHHHSEECCBTCCCBEECC
T ss_pred CccccccCCcccccCChHhhc---CCCeEEecChhhCCHH--------------HHHHHHHHHHhCCcccCCCCcceeee
Confidence 222111 12345544 3358999999998654 6677777665311 1 125
Q ss_pred EEEEeccCCC-------CCCCccccCCCcccc-eecCCCCCH--HHHHHHHHHHHccC----CC----CChhhHHHHHhh
Q 003795 557 VITIASTNRP-------DILDPALVRPGRFDR-KIFIPKPGL--IGRMEILKVHARKK----PM----ADDVDYLAVASM 618 (795)
Q Consensus 557 VlVIatTN~~-------d~LdpaLlrpgRFd~-~I~~~~Pd~--~eR~~Il~~~l~~~----~~----~~d~dl~~LA~~ 618 (795)
+-+|++||.. ..+.+.|.. |+.. .|.+|+... ++...++.+++... .. .++..+..|..+
T Consensus 264 ~rii~at~~~l~~~v~~g~fr~dL~~--rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~ 341 (368)
T 3dzd_A 264 IRVISATNKNLEEEIKKGNFREDLYY--RLSVFQIYLPPLRERGKDVILLAEYFLKKFAKEYKKNCFELSEETKEYLMKQ 341 (368)
T ss_dssp CEEEEEESSCHHHHHHTTSSCHHHHH--HHTSEEEECCCGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHTC
T ss_pred eEEEEecCCCHHHHHHcCCccHHHHH--HhCCeEEeCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhC
Confidence 7789888853 122233333 3321 344544333 34445555554321 11 122235556655
Q ss_pred CCCCcHHHHHHHHHHHHHH
Q 003795 619 TDGMVGAELANIVEVAAIN 637 (795)
Q Consensus 619 t~G~sgadL~~lv~~A~~~ 637 (795)
.-.-+.++|.+++..|+..
T Consensus 342 ~wpGNvreL~n~i~~~~~~ 360 (368)
T 3dzd_A 342 EWKGNVRELKNLIERAVIL 360 (368)
T ss_dssp CCTTHHHHHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHHHHHh
Confidence 5445668888888887754
No 102
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.15 E-value=6.7e-06 Score=88.24 Aligned_cols=163 Identities=17% Similarity=0.186 Sum_probs=95.3
Q ss_pred ceEEECCCCCchhHHHHHhhhhccccEEEeeccce-----eh--hh-------h------------------c-------
Q 003795 453 GILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQF-----VE--IY-------V------------------G------- 493 (795)
Q Consensus 453 giLL~GPpGtGKTtLakaLA~el~~~~~~is~se~-----~~--~~-------~------------------g------- 493 (795)
.++|+||+|+|||+|++.++...+...+.+++... .. .. + +
T Consensus 32 ~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~ 111 (357)
T 2fna_A 32 ITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNE 111 (357)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCSCCCHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSS
T ss_pred cEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhccccCCCHHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceE
Confidence 58999999999999999999987666777776542 00 00 0 0
Q ss_pred c-------chhhHHhHHHHHHhc--CCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcccCCCcEEEEeccC
Q 003795 494 V-------GASRVRSLYQEAKDN--APSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTN 564 (795)
Q Consensus 494 ~-------~~~~l~~lf~~ar~~--~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVIatTN 564 (795)
. ....+..+++..... .|.+++|||++.+.... +......+..+. +. ..++.+|.+++
T Consensus 112 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~-------~~~~~~~l~~~~---~~---~~~~~~i~~g~ 178 (357)
T 2fna_A 112 IKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLR-------GVNLLPALAYAY---DN---LKRIKFIMSGS 178 (357)
T ss_dssp EEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCT-------TCCCHHHHHHHH---HH---CTTEEEEEEES
T ss_pred EEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccC-------chhHHHHHHHHH---Hc---CCCeEEEEEcC
Confidence 0 011234455555443 37899999999875410 011111233333 21 12555665554
Q ss_pred CCCC---------CCccccCCCcccceecCCCCCHHHHHHHHHHHHccCCCCChhhHHHHHhhCCCCcHHHHHHHHH
Q 003795 565 RPDI---------LDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVGAELANIVE 632 (795)
Q Consensus 565 ~~d~---------LdpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~~~~~d~dl~~LA~~t~G~sgadL~~lv~ 632 (795)
.... ....+ .||+...+.+++.+.++..+++...+.......+. ...+...+.|+.. -+..++.
T Consensus 179 ~~~~l~~~l~~~~~~~~l--~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~-~~~i~~~t~G~P~-~l~~~~~ 251 (357)
T 2fna_A 179 EMGLLYDYLRVEDPESPL--FGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKD-YEVVYEKIGGIPG-WLTYFGF 251 (357)
T ss_dssp SHHHHHHHTTTTCTTSTT--TTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCC-HHHHHHHHCSCHH-HHHHHHH
T ss_pred chHHHHHHHhccCCCCcc--ccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCc-HHHHHHHhCCCHH-HHHHHHH
Confidence 3221 11122 24666789999999999999998776533222222 2677788877654 4545444
No 103
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=98.13 E-value=8.3e-07 Score=97.49 Aligned_cols=51 Identities=27% Similarity=0.383 Sum_probs=42.6
Q ss_pred HhccccccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeecc
Q 003795 435 KFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 485 (795)
Q Consensus 435 ~~~~~~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~s 485 (795)
+.|+....++++++.++.| +.|+||||+|||||+++|+|...+..+.|...
T Consensus 12 ~~y~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~ 64 (359)
T 3fvq_A 12 KSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLS 64 (359)
T ss_dssp EEETTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEET
T ss_pred EEECCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEEC
Confidence 3455556788899999988 88999999999999999999988887777543
No 104
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.11 E-value=1.6e-05 Score=85.05 Aligned_cols=166 Identities=19% Similarity=0.198 Sum_probs=92.4
Q ss_pred CceEEECCCCCchhHHHHHhhhhccccEEEeecccee------------hh---hhcc-----------------c----
Q 003795 452 GGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFV------------EI---YVGV-----------------G---- 495 (795)
Q Consensus 452 ~giLL~GPpGtGKTtLakaLA~el~~~~~~is~se~~------------~~---~~g~-----------------~---- 495 (795)
+.++|+||+|+|||+|++.++...+ .+.+++.... .. .++. .
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 109 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRELYAERGHITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPR 109 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHHHHTTTCBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGG
T ss_pred CeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeecccccccCCCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccc
Confidence 3489999999999999999998875 5555554321 00 0000 0
Q ss_pred hhhHHhHHHHH----HhcCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcccCCCcEEEEeccCCCC----
Q 003795 496 ASRVRSLYQEA----KDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPD---- 567 (795)
Q Consensus 496 ~~~l~~lf~~a----r~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVIatTN~~d---- 567 (795)
...+..+++.. ....|.+++|||++.+.... ...+. ..+..|-..++.. .++.+|.++....
T Consensus 110 ~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~----~~~~~---~~~~~L~~~~~~~---~~~~~il~g~~~~~l~~ 179 (350)
T 2qen_A 110 KLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYG----SRGGK---ELLALFAYAYDSL---PNLKIILTGSEVGLLHD 179 (350)
T ss_dssp GCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBT----TTTTH---HHHHHHHHHHHHC---TTEEEEEEESSHHHHHH
T ss_pred cchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccC----ccchh---hHHHHHHHHHHhc---CCeEEEEECCcHHHHHH
Confidence 01222333332 22248899999999875310 00011 1222222223321 3555555543321
Q ss_pred -----CCCccccCCCcccceecCCCCCHHHHHHHHHHHHccCCCC-ChhhHHHHHhhCCCCcHHHHHHHHH
Q 003795 568 -----ILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMA-DDVDYLAVASMTDGMVGAELANIVE 632 (795)
Q Consensus 568 -----~LdpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~~~~-~d~dl~~LA~~t~G~sgadL~~lv~ 632 (795)
.....+. ||+...+.+++.+.++-.+++...+...... ++.....+...+.|+. .-+..++.
T Consensus 180 ~l~~~~~~~~l~--~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~~~~~~~i~~~tgG~P-~~l~~~~~ 247 (350)
T 2qen_A 180 FLKITDYESPLY--GRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVPENEIEEAVELLDGIP-GWLVVFGV 247 (350)
T ss_dssp HHCTTCTTSTTT--TCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHTTCH-HHHHHHHH
T ss_pred HHhhcCCCCccc--cCccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCH-HHHHHHHH
Confidence 1112232 4666789999999999999998876544322 3345667778887765 34544443
No 105
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=98.11 E-value=8.1e-07 Score=98.24 Aligned_cols=51 Identities=22% Similarity=0.365 Sum_probs=42.4
Q ss_pred HhccccccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeecc
Q 003795 435 KFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 485 (795)
Q Consensus 435 ~~~~~~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~s 485 (795)
+.|+....+.++++.++.| +.|+||||+|||||+|+|+|...+..+.|...
T Consensus 11 ~~yg~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~ 63 (381)
T 3rlf_A 11 KAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIG 63 (381)
T ss_dssp EEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEET
T ss_pred EEECCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEEC
Confidence 3455556778889999988 88999999999999999999998887777543
No 106
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=98.07 E-value=1.5e-06 Score=92.15 Aligned_cols=44 Identities=23% Similarity=0.220 Sum_probs=38.6
Q ss_pred cccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeecc
Q 003795 442 MYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 485 (795)
Q Consensus 442 ~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~s 485 (795)
.+.++++.++.| +.|+||||+|||||+++|+|...+..+.|...
T Consensus 23 ~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~ 68 (275)
T 3gfo_A 23 ALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFD 68 (275)
T ss_dssp EEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEET
T ss_pred EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEEC
Confidence 678889999988 88999999999999999999988887776543
No 107
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.06 E-value=1.9e-05 Score=105.42 Aligned_cols=164 Identities=15% Similarity=0.114 Sum_probs=105.5
Q ss_pred CceEEECCCCCchhHHHHHhhhhccccEEEeeccceehhhhccchhhHHhHHHHHHhcCCceeEhHHHHHHhhhccCCCC
Q 003795 452 GGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKG 531 (795)
Q Consensus 452 ~giLL~GPpGtGKTtLakaLA~el~~~~~~is~se~~~~~~g~~~~~l~~lf~~ar~~~p~Il~IDEID~l~~~r~~~~~ 531 (795)
.|+++.||+|||||++++.+|..+|.+++.++|++-.+ ...+..+|..+.... +.+++||++.+...
T Consensus 646 ~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld------~~~lg~~~~g~~~~G-aw~~~DE~nr~~~e------ 712 (2695)
T 4akg_A 646 YGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFD------YQVLSRLLVGITQIG-AWGCFDEFNRLDEK------ 712 (2695)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCC------HHHHHHHHHHHHHHT-CEEEEETTTSSCHH------
T ss_pred CCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCC------hhHhhHHHHHHHhcC-CEeeehhhhhcChH------
Confidence 56899999999999999999999999999999987543 234566776665543 58999999876443
Q ss_pred CCcchHHHHHHHHHHh----hhc-----------ccCCCcEEEEeccCC----CCCCCccccCCCcccceecCCCCCHHH
Q 003795 532 SGGQERDATLNQLLVC----LDG-----------FEGRGNVITIASTNR----PDILDPALVRPGRFDRKIFIPKPGLIG 592 (795)
Q Consensus 532 Sgge~~r~~l~~LL~~----ld~-----------~~~~~~VlVIatTN~----~d~LdpaLlrpgRFd~~I~~~~Pd~~e 592 (795)
.-.+++..+.. +.. +.-..++.|++|.|+ ...|+++|.+ || +.|.+..||.+.
T Consensus 713 -----vLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~--~F-r~v~m~~Pd~~~ 784 (2695)
T 4akg_A 713 -----VLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLKK--SF-REFSMKSPQSGT 784 (2695)
T ss_dssp -----HHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHHT--TE-EEEECCCCCHHH
T ss_pred -----HHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHHh--he-EEEEeeCCCHHH
Confidence 11123222221 111 112345667788884 3468999988 77 589999999998
Q ss_pred HHHHHHHHHccCCCCCh-----hhHHHHH-hhCC-----CCcHHHHHHHHHHHHHH
Q 003795 593 RMEILKVHARKKPMADD-----VDYLAVA-SMTD-----GMVGAELANIVEVAAIN 637 (795)
Q Consensus 593 R~~Il~~~l~~~~~~~d-----~dl~~LA-~~t~-----G~sgadL~~lv~~A~~~ 637 (795)
..+|+-.... ...... +.+-.++ .... .|.-+.+..+++.|...
T Consensus 785 i~ei~l~s~G-f~~a~~la~kiv~~~~l~~e~ls~q~hydfglRalksvL~~ag~l 839 (2695)
T 4akg_A 785 IAEMILQIMG-FEDSKSLASKIVHFLELLSSKCSSMNHYHFGLRTLKGVLRNCSPL 839 (2695)
T ss_dssp HHHHHHHHHH-CSSHHHHHHHHHHHHHHHHHHSCCCTTCCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcC-CCchHHHHHHHHHHHHHHHHHhCcCCcccccHHHHHHHHHHHHHh
Confidence 8888643321 111111 0111111 1222 26778888888877543
No 108
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=98.05 E-value=2.1e-06 Score=94.13 Aligned_cols=48 Identities=25% Similarity=0.296 Sum_probs=39.8
Q ss_pred cccccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeecc
Q 003795 438 THGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 485 (795)
Q Consensus 438 ~~~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~s 485 (795)
+....+.++++.++.| +.|+||||+|||||+++|+|...+..+.+...
T Consensus 26 g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~ 75 (355)
T 1z47_A 26 GGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIG 75 (355)
T ss_dssp TSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEET
T ss_pred CCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEEC
Confidence 3444677888888887 88999999999999999999988877776543
No 109
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.04 E-value=2.2e-06 Score=86.64 Aligned_cols=128 Identities=20% Similarity=0.217 Sum_probs=76.4
Q ss_pred ceEEECCCCCchhHHHHHhhhh--------cc-ccEEEeeccceehhhh----------ccchh--hHHhHHHHH--Hhc
Q 003795 453 GILLCGPPGVGKTLLAKAVAGE--------AG-VNFFSISASQFVEIYV----------GVGAS--RVRSLYQEA--KDN 509 (795)
Q Consensus 453 giLL~GPpGtGKTtLakaLA~e--------l~-~~~~~is~se~~~~~~----------g~~~~--~l~~lf~~a--r~~ 509 (795)
-.+++|+||+|||+++..++-. .| .+++..++.++..... ..... ....+++.+ ...
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKKPEN 86 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTSGGG
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhcccc
Confidence 3789999999999998776332 23 5555555554432111 00000 112333331 234
Q ss_pred CCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcccCCCcEEEEeccCCCCCCCccccCCCcccceecCCCCC
Q 003795 510 APSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPG 589 (795)
Q Consensus 510 ~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVIatTN~~d~LdpaLlrpgRFd~~I~~~~Pd 589 (795)
.+++++|||++.+.+.+.. +.+.. .++..+.. ....++-||..|++++.|+.+++. |++..+++.+|.
T Consensus 87 ~~~vliIDEAq~l~~~~~~----~~e~~-----rll~~l~~-~r~~~~~iil~tq~~~~l~~~lr~--ri~~~~~l~~~~ 154 (199)
T 2r2a_A 87 IGSIVIVDEAQDVWPARSA----GSKIP-----ENVQWLNT-HRHQGIDIFVLTQGPKLLDQNLRT--LVRKHYHIASNK 154 (199)
T ss_dssp TTCEEEETTGGGTSBCCCT----TCCCC-----HHHHGGGG-TTTTTCEEEEEESCGGGBCHHHHT--TEEEEEEEEECS
T ss_pred CceEEEEEChhhhccCccc----cchhH-----HHHHHHHh-cCcCCeEEEEECCCHHHHhHHHHH--HhheEEEEcCcc
Confidence 4679999999998654321 11211 24444442 233456677778889999999887 999999988765
Q ss_pred HHH
Q 003795 590 LIG 592 (795)
Q Consensus 590 ~~e 592 (795)
...
T Consensus 155 ~~~ 157 (199)
T 2r2a_A 155 MGM 157 (199)
T ss_dssp SCC
T ss_pred cCc
Confidence 443
No 110
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=98.04 E-value=2.7e-06 Score=93.89 Aligned_cols=51 Identities=27% Similarity=0.327 Sum_probs=41.7
Q ss_pred HhccccccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeecc
Q 003795 435 KFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 485 (795)
Q Consensus 435 ~~~~~~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~s 485 (795)
+.|.....+.++++.++.| +.|+||||+|||||+++|||...+..+.+...
T Consensus 19 ~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~ 71 (372)
T 1v43_A 19 KRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFG 71 (372)
T ss_dssp EEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEET
T ss_pred EEECCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEEC
Confidence 3444445678889999887 88999999999999999999988887777543
No 111
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=98.01 E-value=2.3e-06 Score=94.20 Aligned_cols=50 Identities=26% Similarity=0.291 Sum_probs=41.0
Q ss_pred hccccccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeecc
Q 003795 436 FFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 485 (795)
Q Consensus 436 ~~~~~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~s 485 (795)
.|+....+.++++.++.| +.|+||||+|||||+++|||...+..+.+...
T Consensus 12 ~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~ 63 (362)
T 2it1_A 12 KFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFD 63 (362)
T ss_dssp ESSSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEET
T ss_pred EECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEEC
Confidence 344445678888999887 88999999999999999999988877777543
No 112
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=97.99 E-value=2.2e-06 Score=94.20 Aligned_cols=50 Identities=24% Similarity=0.280 Sum_probs=41.1
Q ss_pred hccccccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeecc
Q 003795 436 FFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 485 (795)
Q Consensus 436 ~~~~~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~s 485 (795)
.|+....+.++++.++.| +.|+||||+|||||+++|+|...+..+.+...
T Consensus 12 ~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~ 63 (359)
T 2yyz_A 12 YFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFD 63 (359)
T ss_dssp EETTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEET
T ss_pred EECCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEEC
Confidence 344445678889999887 88999999999999999999988877777553
No 113
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.98 E-value=1.1e-05 Score=79.83 Aligned_cols=26 Identities=42% Similarity=0.708 Sum_probs=23.0
Q ss_pred eEEECCCCCchhHHHHHhhhhccccE
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEAGVNF 479 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el~~~~ 479 (795)
++|+||||+|||||++.|++.++..+
T Consensus 3 i~l~G~nGsGKTTLl~~l~g~l~i~~ 28 (178)
T 1ye8_A 3 IIITGEPGVGKTTLVKKIVERLGKRA 28 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHGGGE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcC
Confidence 68999999999999999999876543
No 114
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.94 E-value=2.4e-06 Score=87.75 Aligned_cols=50 Identities=14% Similarity=0.140 Sum_probs=40.9
Q ss_pred hccccccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeecc
Q 003795 436 FFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 485 (795)
Q Consensus 436 ~~~~~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~s 485 (795)
.|+....+.++++.++.| +.|+||||+|||||+++|+|...+..+.+...
T Consensus 13 ~y~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~ 64 (224)
T 2pcj_A 13 VIRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLE 64 (224)
T ss_dssp EETTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEET
T ss_pred EECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEC
Confidence 344445678888999888 88999999999999999999988877776543
No 115
>1zbo_A Hypothetical protein BPP1347; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.60A {Bordetella parapertussis} SCOP: b.122.1.10
Probab=97.92 E-value=3.2e-06 Score=85.84 Aligned_cols=128 Identities=10% Similarity=-0.024 Sum_probs=89.7
Q ss_pred chhhhcccccccceeecccCCccccccccceEEeecCcceeeeccCC-ccc-chhhhhcccccccccccccccCCCCCCC
Q 003795 126 YTEIFSLKDEGKLKHVIKSPSGSLRQKAEPVLVVLEDSRVLRTVLPS-LDS-NRKFWESWDELKIDSLCVNAYTPPLKKP 203 (795)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (795)
-.|+++++++++|+++.++|||++++.++|+ .|..+-. +.. +..+++.-+.+.=+. +.....
T Consensus 59 ~~dl~~vGt~a~I~~~~~lpdG~~~v~v~G~---------~R~rI~~~~~~~~~y~~a~ve~l~~~~-------~~~~~~ 122 (210)
T 1zbo_A 59 REVLARAGTMARIDHWEAPMPALLELACTGT---------GRFRLHACTQGKYGLWTGQAEPVPDDA-------PLEVPP 122 (210)
T ss_dssp CCCEEEEEEEEEEEEEECSSTTCEEEEEEEE---------EEEEEEEEEECGGGCEEEEEEEECCCC-------CCCCCG
T ss_pred cCchhceEEEEEEEEEEeCCCceEEEEEEEE---------EEEEEEEEeecCCCcEEEEEEEcCCCC-------CCCCcH
Confidence 3679999999999999999999999999999 7877733 433 355555544432100 001122
Q ss_pred CCCC----------cccccc-----cccCcccccccCCCchhhHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHHHH
Q 003795 204 EVPN----------PYLGFL-----WRVPASMLSTFRPKKESKRAAEIRRAREELKRQRKEELEKMREESEMMEKAMDMQ 268 (795)
Q Consensus 204 ~~~~----------~~~~~~-----~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~k~eld~~~~~~~~le~e~~~l 268 (795)
+... .|+... ++++. ..+.+.|.+|+|.+|+.+.++.++||+|.+. .-..+|+.....|
T Consensus 123 e~~al~~~l~~~~~~~~~~~~~~~~~~l~~-----~~~~~dp~~lad~ia~~l~l~~~ekQ~lLe~-d~~~Rl~~l~~~L 196 (210)
T 1zbo_A 123 ELARSASALGRLIARLQREGVPPHIMPMAA-----PFRLDDCGWVADRWAEMLSLPPADKARLLLL-PPLDRLREIDAVL 196 (210)
T ss_dssp GGHHHHHHHHHHHHHHHHTTCCTTTCSBCS-----CCCTTCHHHHHHHHHHHSCCCHHHHHHHHHS-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccccccccCCC-----cCCCCCHHHHHHHHHHhCCCCHHHHHHHHhC-CHHHHHHHHHHHH
Confidence 2222 222222 33333 6678899999999999999999999999999 9999999999888
Q ss_pred HHHHHHH
Q 003795 269 KKEEERR 275 (795)
Q Consensus 269 ~~e~~~~ 275 (795)
++|...+
T Consensus 197 ~~e~~~~ 203 (210)
T 1zbo_A 197 AADGHAL 203 (210)
T ss_dssp HC-----
T ss_pred HHHhhhh
Confidence 8776543
No 116
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=97.91 E-value=3.3e-06 Score=93.31 Aligned_cols=49 Identities=27% Similarity=0.386 Sum_probs=40.1
Q ss_pred hccccccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeec
Q 003795 436 FFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (795)
Q Consensus 436 ~~~~~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (795)
.|+....+.++++.++.| +.|+||||+|||||+++|||...+..+.+..
T Consensus 12 ~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i 62 (372)
T 1g29_1 12 VFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYI 62 (372)
T ss_dssp EETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEE
T ss_pred EECCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEE
Confidence 344445677888998887 8899999999999999999998877776654
No 117
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=97.91 E-value=1.7e-05 Score=85.94 Aligned_cols=176 Identities=15% Similarity=0.088 Sum_probs=111.1
Q ss_pred cCCceEEECCCCCchhHHHHHhhhhccc----cEEEeeccceehhhhccchhhHHhHHHHHHh----cCCceeEhHHHHH
Q 003795 450 IPGGILLCGPPGVGKTLLAKAVAGEAGV----NFFSISASQFVEIYVGVGASRVRSLYQEAKD----NAPSVVFIDELDA 521 (795)
Q Consensus 450 i~~giLL~GPpGtGKTtLakaLA~el~~----~~~~is~se~~~~~~g~~~~~l~~lf~~ar~----~~p~Il~IDEID~ 521 (795)
+++.++|+||.|.||++.++.|+..+.. +...+... + ...++.+.+.+.. ....+++|||++.
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-------~--~~~~~~l~~~~~~~plf~~~kvvii~~~~~ 87 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSID-------P--NTDWNAIFSLCQAMSLFASRQTLLLLLPEN 87 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECC-------T--TCCHHHHHHHHHHHHHCCSCEEEEEECCSS
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEec-------C--CCCHHHHHHHhcCcCCccCCeEEEEECCCC
Confidence 4456899999999999999999886521 11111111 1 1334555555543 3356999999876
Q ss_pred -HhhhccCCCCCCcchHHHHHHHHHHhhhcccCCCcEEEEeccCCC------CCCCccccCCCcccceecCCCCCHHHHH
Q 003795 522 -VGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRP------DILDPALVRPGRFDRKIFIPKPGLIGRM 594 (795)
Q Consensus 522 -l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVIatTN~~------d~LdpaLlrpgRFd~~I~~~~Pd~~eR~ 594 (795)
+... ..+.|+..++. ...++++|.+|+.+ ..+.+++.+ |. .++.+.+++..+..
T Consensus 88 kl~~~--------------~~~aLl~~le~--p~~~~~~il~~~~~~~~~~~~k~~~~i~s--r~-~~~~~~~l~~~~l~ 148 (343)
T 1jr3_D 88 GPNAA--------------INEQLLTLTGL--LHDDLLLIVRGNKLSKAQENAAWFTALAN--RS-VQVTCQTPEQAQLP 148 (343)
T ss_dssp CCCTT--------------HHHHHHHHHTT--CBTTEEEEEEESCCCTTTTTSHHHHHHTT--TC-EEEEECCCCTTHHH
T ss_pred CCChH--------------HHHHHHHHHhc--CCCCeEEEEEcCCCChhhHhhHHHHHHHh--Cc-eEEEeeCCCHHHHH
Confidence 5322 66778877774 33445555444332 346677777 43 37889999999999
Q ss_pred HHHHHHHccCCCC-ChhhHHHHHhhCCCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHH
Q 003795 595 EILKVHARKKPMA-DDVDYLAVASMTDGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQI 657 (795)
Q Consensus 595 ~Il~~~l~~~~~~-~d~dl~~LA~~t~G~sgadL~~lv~~A~~~A~~~~~~~It~edl~~Al~~ 657 (795)
..++..+...++. ++..+..++..+.| +.+++.+.++..... .+...||.+++...+..
T Consensus 149 ~~l~~~~~~~g~~i~~~a~~~l~~~~~g-dl~~~~~elekl~l~---~~~~~It~e~V~~~~~~ 208 (343)
T 1jr3_D 149 RWVAARAKQLNLELDDAANQVLCYCYEG-NLLALAQALERLSLL---WPDGKLTLPRVEQAVND 208 (343)
T ss_dssp HHHHHHHHHTTCEECHHHHHHHHHSSTT-CHHHHHHHHHHHHHH---CTTCEECHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHhch-HHHHHHHHHHHHHHh---cCCCCCCHHHHHHHHhh
Confidence 9898888766543 33345667776654 455555555554432 23457999999887653
No 118
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.90 E-value=7.2e-06 Score=84.77 Aligned_cols=45 Identities=16% Similarity=0.240 Sum_probs=39.3
Q ss_pred ccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeecc
Q 003795 441 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 485 (795)
Q Consensus 441 ~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~s 485 (795)
..+.++++.++.| +.|+||||+|||||+++|+|...+..+.+...
T Consensus 19 ~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~ 65 (235)
T 3tif_A 19 YALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYID 65 (235)
T ss_dssp EEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEET
T ss_pred eeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEEC
Confidence 3678889999988 88999999999999999999998888877654
No 119
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=97.90 E-value=2.7e-06 Score=93.34 Aligned_cols=43 Identities=23% Similarity=0.321 Sum_probs=37.5
Q ss_pred cccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeec
Q 003795 442 MYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (795)
Q Consensus 442 ~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (795)
.+.++++.++.| +.|+||||+|||||+++|||...+..+.+..
T Consensus 20 vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i 64 (353)
T 1oxx_K 20 ALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYF 64 (353)
T ss_dssp EEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEE
T ss_pred eEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEE
Confidence 677889999887 8899999999999999999988877776654
No 120
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.90 E-value=1.5e-05 Score=90.18 Aligned_cols=127 Identities=17% Similarity=0.222 Sum_probs=97.6
Q ss_pred CceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcccCCCcEEEEec---------cC---CCCCCCccccCCCc
Q 003795 511 PSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIAS---------TN---RPDILDPALVRPGR 578 (795)
Q Consensus 511 p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVIat---------TN---~~d~LdpaLlrpgR 578 (795)
|.|++|||++.+... .++.|+..++. ...+++|+++ |+ .+..++|.+++ |
T Consensus 296 ~~VliIDEa~~l~~~--------------a~~aLlk~lEe--~~~~~~il~tn~~~~~i~~~~~~~~~~~l~~~i~s--R 357 (456)
T 2c9o_A 296 PGVLFVDEVHMLDIE--------------CFTYLHRALES--SIAPIVIFASNRGNCVIRGTEDITSPHGIPLDLLD--R 357 (456)
T ss_dssp ECEEEEESGGGCBHH--------------HHHHHHHHTTS--TTCCEEEEEECCSEEECBTTSSCEEETTCCHHHHT--T
T ss_pred ceEEEEechhhcCHH--------------HHHHHHHHhhc--cCCCEEEEecCCccccccccccccccccCChhHHh--h
Confidence 469999999998544 88999999984 3444555455 33 26688999999 9
Q ss_pred ccceecCCCCCHHHHHHHHHHHHccCCC-CChhhHHHHHhhC-CCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Q 003795 579 FDRKIFIPKPGLIGRMEILKVHARKKPM-ADDVDYLAVASMT-DGMVGAELANIVEVAAINMMRDGRTEITTDDLLQAAQ 656 (795)
Q Consensus 579 Fd~~I~~~~Pd~~eR~~Il~~~l~~~~~-~~d~dl~~LA~~t-~G~sgadL~~lv~~A~~~A~~~~~~~It~edl~~Al~ 656 (795)
|.. +.|++|+.++..++++..+..... .++..+..++..+ .| +++...++++.|...|..+++..|+.+|+..|+.
T Consensus 358 ~~~-~~~~~~~~~e~~~iL~~~~~~~~~~~~~~~~~~i~~~a~~g-~~r~a~~ll~~a~~~A~~~~~~~v~~~~v~~~~~ 435 (456)
T 2c9o_A 358 VMI-IRTMLYTPQEMKQIIKIRAQTEGINISEEALNHLGEIGTKT-TLRYSVQLLTPANLLAKINGKDSIEKEHVEEISE 435 (456)
T ss_dssp EEE-EECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHS-CHHHHHHTHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred cce-eeCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHccCC-CHHHHHHHHHHHHHHHhhcCCCccCHHHHHHHHH
Confidence 986 699999999999999987753332 2333456677766 54 6777779999998889888999999999999986
Q ss_pred H
Q 003795 657 I 657 (795)
Q Consensus 657 ~ 657 (795)
.
T Consensus 436 ~ 436 (456)
T 2c9o_A 436 L 436 (456)
T ss_dssp H
T ss_pred H
Confidence 3
No 121
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=97.88 E-value=4e-06 Score=91.77 Aligned_cols=48 Identities=23% Similarity=0.351 Sum_probs=40.2
Q ss_pred ccccccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeecc
Q 003795 437 FTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 485 (795)
Q Consensus 437 ~~~~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~s 485 (795)
|+.. .+.++++.++.| +.|+||||+|||||+++|||...+..+.+...
T Consensus 11 y~~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~ 60 (348)
T 3d31_A 11 WKNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLD 60 (348)
T ss_dssp CSSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEET
T ss_pred ECCE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEEC
Confidence 4444 677888999887 88999999999999999999988887777554
No 122
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.88 E-value=4.6e-06 Score=87.97 Aligned_cols=48 Identities=19% Similarity=0.352 Sum_probs=39.4
Q ss_pred hccccccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEee
Q 003795 436 FFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 483 (795)
Q Consensus 436 ~~~~~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is 483 (795)
.|.....+.++++.++.| +.|+||||+|||||+++|+|...+..+.+.
T Consensus 20 ~~~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~ 69 (266)
T 4g1u_C 20 HVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECH 69 (266)
T ss_dssp EETTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEE
T ss_pred EeCCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEE
Confidence 345556788899999888 889999999999999999998866655554
No 123
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.87 E-value=1.3e-05 Score=103.71 Aligned_cols=116 Identities=22% Similarity=0.238 Sum_probs=74.7
Q ss_pred cccCCceEEECCCCCchhHHHHHhhhhc---cccEEEeeccceehh----hhc------------cchhhHHhHHHHHHh
Q 003795 448 VRIPGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEI----YVG------------VGASRVRSLYQEAKD 508 (795)
Q Consensus 448 l~i~~giLL~GPpGtGKTtLakaLA~el---~~~~~~is~se~~~~----~~g------------~~~~~l~~lf~~ar~ 508 (795)
+..+.+++|+||||||||+||.+++.+. +.....++..+.... ..| ..+..+..++..++.
T Consensus 1424 i~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr~ 1503 (2050)
T 3cmu_A 1424 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARS 1503 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHHhc
Confidence 4555569999999999999999998764 455666666543322 111 112334556667778
Q ss_pred cCCceeEhHHHHHHhhhc---cCCCCCCcchHHHHHHHHHHhhhcccCCCcEEEEecc
Q 003795 509 NAPSVVFIDELDAVGRER---GLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIAST 563 (795)
Q Consensus 509 ~~p~Il~IDEID~l~~~r---~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVIatT 563 (795)
..|++|+||+++.+.+.. +...++........+.++|..|.+.....+++||.+.
T Consensus 1504 ~~~~lVVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~~~~~~~v~VI~tN 1561 (2050)
T 3cmu_A 1504 GAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFIN 1561 (2050)
T ss_dssp TCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred CCCCEEEEcChhHhcccccccccccccccchHHHHHHHHHHHHHHHHHhCCcEEEEEc
Confidence 899999999998876532 2112222211334677777777776666676666554
No 124
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.85 E-value=1.2e-06 Score=94.23 Aligned_cols=69 Identities=25% Similarity=0.319 Sum_probs=44.8
Q ss_pred CCceEEECCCCCchhHHHHHhhhhcc----ccEEEeeccceehhhhccc-hhhHHhHHHHHHhcCCceeEhHHHHH
Q 003795 451 PGGILLCGPPGVGKTLLAKAVAGEAG----VNFFSISASQFVEIYVGVG-ASRVRSLYQEAKDNAPSVVFIDELDA 521 (795)
Q Consensus 451 ~~giLL~GPpGtGKTtLakaLA~el~----~~~~~is~se~~~~~~g~~-~~~l~~lf~~ar~~~p~Il~IDEID~ 521 (795)
..+++|+||||||||+|+++|+..+. .++..+++.++...+.... ...+...+.... .+.+|+|||++.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~~--~~~lLiiDdig~ 225 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDVKNAISNGSVKEEIDAVK--NVPVLILDDIGA 225 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHHHCCCC----CCTTHHHH--TSSEEEEETCCC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHHHHHHhccchHHHHHHHhc--CCCEEEEcCCCC
Confidence 45699999999999999999998654 6777777776654432211 111122233322 346999999954
No 125
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.85 E-value=4.4e-05 Score=77.86 Aligned_cols=49 Identities=24% Similarity=0.280 Sum_probs=40.4
Q ss_pred hccccccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeecc
Q 003795 436 FFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 485 (795)
Q Consensus 436 ~~~~~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~s 485 (795)
.|.. ..+.++++.++.| +.|+||||+|||||+++|+|...+..+.+...
T Consensus 19 ~y~~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~ 69 (214)
T 1sgw_A 19 GYDK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYN 69 (214)
T ss_dssp ESSS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEET
T ss_pred EeCC-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEEC
Confidence 3444 5677888888887 88999999999999999999988877777543
No 126
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=97.84 E-value=3.7e-05 Score=80.87 Aligned_cols=44 Identities=25% Similarity=0.351 Sum_probs=38.0
Q ss_pred cccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeecc
Q 003795 440 GEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 485 (795)
Q Consensus 440 ~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~s 485 (795)
...+.++++.++ | +.|+||||+|||||+++|+|.. +..+.+...
T Consensus 18 ~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~ 63 (263)
T 2pjz_A 18 RFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFIN 63 (263)
T ss_dssp EEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEET
T ss_pred ceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEEC
Confidence 446788889998 8 8899999999999999999999 888877654
No 127
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.81 E-value=3.9e-05 Score=80.39 Aligned_cols=50 Identities=20% Similarity=0.210 Sum_probs=41.3
Q ss_pred hccccccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeecc
Q 003795 436 FFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 485 (795)
Q Consensus 436 ~~~~~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~s 485 (795)
.|+....+.++++.++.| +.|+||||+|||||+++|+|...+..+.+...
T Consensus 24 ~y~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~ 75 (256)
T 1vpl_A 24 RIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVF 75 (256)
T ss_dssp EETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEET
T ss_pred EECCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEC
Confidence 344445678889999888 88999999999999999999988877777543
No 128
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=97.78 E-value=2.3e-05 Score=81.96 Aligned_cols=45 Identities=18% Similarity=0.253 Sum_probs=38.7
Q ss_pred ccccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEee
Q 003795 439 HGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 483 (795)
Q Consensus 439 ~~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is 483 (795)
....+.++++.++.| +.|+||||+|||||+++|+|...+..+.+.
T Consensus 17 ~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~ 63 (253)
T 2nq2_C 17 ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE 63 (253)
T ss_dssp TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEE
T ss_pred CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE
Confidence 344678888988888 889999999999999999999888777775
No 129
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.77 E-value=3.9e-05 Score=79.85 Aligned_cols=46 Identities=20% Similarity=0.156 Sum_probs=39.2
Q ss_pred cccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeecc
Q 003795 440 GEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 485 (795)
Q Consensus 440 ~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~s 485 (795)
...+.++++.++.| +.|+||||+|||||+++|+|...+..+.+...
T Consensus 22 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~ 69 (247)
T 2ff7_A 22 PVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLID 69 (247)
T ss_dssp CEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEET
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEC
Confidence 34678888999888 88999999999999999999988877776543
No 130
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=97.76 E-value=8e-06 Score=89.83 Aligned_cols=45 Identities=20% Similarity=0.257 Sum_probs=39.2
Q ss_pred ccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeecc
Q 003795 441 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 485 (795)
Q Consensus 441 ~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~s 485 (795)
..+.++++.++.| +.|+||||+|||||+++|++...+..+.+...
T Consensus 42 ~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~ 88 (366)
T 3tui_C 42 QALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVD 88 (366)
T ss_dssp EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEET
T ss_pred EEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEEC
Confidence 4678889999988 88999999999999999999988887777543
No 131
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.73 E-value=3.5e-05 Score=79.69 Aligned_cols=46 Identities=22% Similarity=0.250 Sum_probs=39.1
Q ss_pred cccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeecc
Q 003795 440 GEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 485 (795)
Q Consensus 440 ~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~s 485 (795)
...+.++++.++.| +.|+||||+|||||+++|+|...+..+.+...
T Consensus 18 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~ 65 (237)
T 2cbz_A 18 PPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIK 65 (237)
T ss_dssp CCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEEC
T ss_pred CceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEC
Confidence 34678888999888 88999999999999999999988777776554
No 132
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.68 E-value=0.00011 Score=74.95 Aligned_cols=19 Identities=42% Similarity=0.639 Sum_probs=18.5
Q ss_pred eEEECCCCCchhHHHHHhh
Q 003795 454 ILLCGPPGVGKTLLAKAVA 472 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA 472 (795)
++|+||||+|||||++.|+
T Consensus 33 ~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 33 VLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHH
Confidence 8999999999999999999
No 133
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=97.65 E-value=7e-05 Score=79.90 Aligned_cols=56 Identities=23% Similarity=0.316 Sum_probs=40.1
Q ss_pred HHHHHHHHhccccccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeecc
Q 003795 428 LELEEIVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 485 (795)
Q Consensus 428 ~~l~~lv~~~~~~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~s 485 (795)
+.++++... ....+.++++.++.| +.|+||||+|||||+++|+|...+..+.+...
T Consensus 41 l~~~~l~~~--~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~ 98 (290)
T 2bbs_A 41 LSFSNFSLL--GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHS 98 (290)
T ss_dssp -----------CCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECC
T ss_pred EEEEEEEEc--CceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEEC
Confidence 444454432 245678899999988 88999999999999999999988777777654
No 134
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=97.60 E-value=4.9e-05 Score=81.74 Aligned_cols=46 Identities=20% Similarity=0.286 Sum_probs=39.8
Q ss_pred cccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeecc
Q 003795 440 GEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 485 (795)
Q Consensus 440 ~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~s 485 (795)
...+.++++.++.| +.|+||||+|||||+++|++...+..+.|...
T Consensus 67 ~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~ 114 (306)
T 3nh6_A 67 RETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRID 114 (306)
T ss_dssp CEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEET
T ss_pred CceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEEC
Confidence 45678889999988 99999999999999999999998887776544
No 135
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.60 E-value=8.3e-05 Score=100.06 Aligned_cols=136 Identities=21% Similarity=0.313 Sum_probs=85.6
Q ss_pred CceEEECCCCCchhHHHHH-hhhhccccEEEeeccceehhhhccchhhHHhHHHHH----Hh------------cCCcee
Q 003795 452 GGILLCGPPGVGKTLLAKA-VAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEA----KD------------NAPSVV 514 (795)
Q Consensus 452 ~giLL~GPpGtGKTtLaka-LA~el~~~~~~is~se~~~~~~g~~~~~l~~lf~~a----r~------------~~p~Il 514 (795)
..+||+||+|||||.+++. ++...+.+++.++++...+. ..+...++.. +. ....|+
T Consensus 1305 ~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tta------~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~Vl 1378 (3245)
T 3vkg_A 1305 RPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATTP------ELLLKTFDHHCEYKRTPSGETVLRPTQLGKWLVV 1378 (3245)
T ss_dssp CCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCCH------HHHHHHHHHHEEEEECTTSCEEEEESSTTCEEEE
T ss_pred CcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCCH------HHHHHHHhhcceEEeccCCCcccCCCcCCceEEE
Confidence 4589999999999977755 55444666777887754332 2222233221 00 112489
Q ss_pred EhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhccc--------CCCcEEEEeccCCCC-----CCCccccCCCcccc
Q 003795 515 FIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFE--------GRGNVITIASTNRPD-----ILDPALVRPGRFDR 581 (795)
Q Consensus 515 ~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~--------~~~~VlVIatTN~~d-----~LdpaLlrpgRFd~ 581 (795)
||||++.-..+. -|.+..-..+.+++..- ++. .-.++.+|+|.|++. .++++|+| ||.
T Consensus 1379 FiDDiNmp~~D~-----yGtQ~~ielLrqlld~~-g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r--~F~- 1449 (3245)
T 3vkg_A 1379 FCDEINLPSTDK-----YGTQRVITFIRQMVEKG-GFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLR--HAP- 1449 (3245)
T ss_dssp EETTTTCCCCCT-----TSCCHHHHHHHHHHHHS-EEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHT--TCC-
T ss_pred EecccCCCCccc-----cccccHHHHHHHHHHcC-CeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHh--hce-
Confidence 999997532221 23333334444444321 111 124688999999884 58999999 887
Q ss_pred eecCCCCCHHHHHHHHHHHHc
Q 003795 582 KIFIPKPGLIGRMEILKVHAR 602 (795)
Q Consensus 582 ~I~~~~Pd~~eR~~Il~~~l~ 602 (795)
+++++.|+.++...|+..++.
T Consensus 1450 vi~i~~ps~esL~~If~til~ 1470 (3245)
T 3vkg_A 1450 ILLVDFPSTSSLTQIYGTFNR 1470 (3245)
T ss_dssp EEECCCCCHHHHHHHHHHHHH
T ss_pred EEEeCCCCHHHHHHHHHHHHH
Confidence 699999999999999875543
No 136
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.54 E-value=4.7e-05 Score=76.74 Aligned_cols=22 Identities=36% Similarity=0.347 Sum_probs=20.4
Q ss_pred eEEECCCCCchhHHHHHhhhhc
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEA 475 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el 475 (795)
++|+||||+|||||++.|++..
T Consensus 28 ~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 28 TEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp EEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 8999999999999999999844
No 137
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=97.53 E-value=3.3e-05 Score=78.20 Aligned_cols=26 Identities=19% Similarity=0.434 Sum_probs=23.3
Q ss_pred CceEEECCCCCchhHHHHHhhhhccc
Q 003795 452 GGILLCGPPGVGKTLLAKAVAGEAGV 477 (795)
Q Consensus 452 ~giLL~GPpGtGKTtLakaLA~el~~ 477 (795)
.+++|+||||||||++|.+||+.+..
T Consensus 59 n~ili~GPPGtGKTt~a~ala~~l~g 84 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIHFIQG 84 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHHHHTC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 46999999999999999999998754
No 138
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.48 E-value=5.7e-05 Score=79.03 Aligned_cols=50 Identities=20% Similarity=0.326 Sum_probs=41.9
Q ss_pred hccccccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeecc
Q 003795 436 FFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 485 (795)
Q Consensus 436 ~~~~~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~s 485 (795)
.|+....+.++++.++.| +.|+||||+|||||+++|+|...+..+.+...
T Consensus 16 ~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~ 67 (257)
T 1g6h_A 16 YFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFE 67 (257)
T ss_dssp EETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEET
T ss_pred EECCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEC
Confidence 344445778899999888 88999999999999999999998887877654
No 139
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.47 E-value=5.8e-05 Score=79.26 Aligned_cols=50 Identities=16% Similarity=0.206 Sum_probs=41.7
Q ss_pred hccccccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeecc
Q 003795 436 FFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 485 (795)
Q Consensus 436 ~~~~~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~s 485 (795)
.|+....+.++++.++.| +.|+||||+|||||+++|+|...+..+.+...
T Consensus 15 ~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~ 66 (262)
T 1b0u_A 15 RYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVN 66 (262)
T ss_dssp EETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEET
T ss_pred EECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEC
Confidence 344445678889999888 88999999999999999999988887777654
No 140
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.46 E-value=2.5e-05 Score=81.04 Aligned_cols=43 Identities=19% Similarity=0.282 Sum_probs=33.7
Q ss_pred ccccCcccCCc-eEEECCCCCchhHHHHHhhhhccccEEEeecc
Q 003795 443 YRRRGVRIPGG-ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 485 (795)
Q Consensus 443 ~~~~gl~i~~g-iLL~GPpGtGKTtLakaLA~el~~~~~~is~s 485 (795)
+.++++.++.. +.|+||||+|||||+++|+|...+..+.+...
T Consensus 15 l~~isl~i~~e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~ 58 (240)
T 2onk_A 15 RLNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLN 58 (240)
T ss_dssp EEEEEEEECSSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEET
T ss_pred EeeeEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEC
Confidence 45555554434 88999999999999999999988877777543
No 141
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.45 E-value=0.00012 Score=73.48 Aligned_cols=22 Identities=36% Similarity=0.658 Sum_probs=20.2
Q ss_pred eEEECCCCCchhHHHHHhhhhc
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEA 475 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el 475 (795)
++|+||||+|||||++.+++..
T Consensus 26 ~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 26 IALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHH
Confidence 8899999999999999999754
No 142
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.45 E-value=6e-05 Score=78.06 Aligned_cols=49 Identities=24% Similarity=0.327 Sum_probs=41.1
Q ss_pred ccccccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeecc
Q 003795 437 FTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 485 (795)
Q Consensus 437 ~~~~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~s 485 (795)
|.....+.++++.++.| +.|+||||+|||||+++|+|...+..+.+...
T Consensus 16 y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~ 66 (240)
T 1ji0_A 16 YGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFN 66 (240)
T ss_dssp ETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEET
T ss_pred ECCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEC
Confidence 44445678888999888 88999999999999999999988888877654
No 143
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.45 E-value=1.7e-05 Score=77.54 Aligned_cols=27 Identities=33% Similarity=0.481 Sum_probs=21.6
Q ss_pred cCcccCCc--eEEECCCCCchhHHHHHhh
Q 003795 446 RGVRIPGG--ILLCGPPGVGKTLLAKAVA 472 (795)
Q Consensus 446 ~gl~i~~g--iLL~GPpGtGKTtLakaLA 472 (795)
+++.++.| ++|+||||+|||||++++.
T Consensus 2 vsl~i~~gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 2 MKLTIPELSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEEESSEEEEEECCTTSCHHHHHHHHS
T ss_pred ccccCCCCEEEEEECCCCCCHHHHHHHHc
Confidence 34566666 8899999999999999543
No 144
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.43 E-value=7e-05 Score=78.78 Aligned_cols=51 Identities=24% Similarity=0.322 Sum_probs=42.2
Q ss_pred HhccccccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeecc
Q 003795 435 KFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 485 (795)
Q Consensus 435 ~~~~~~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~s 485 (795)
..|+....+.++++.++.| +.|+||||+|||||+++|+|...+..+.+...
T Consensus 32 ~~y~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~ 84 (263)
T 2olj_A 32 KSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIID 84 (263)
T ss_dssp EEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEET
T ss_pred EEECCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEEC
Confidence 3444445778889999888 88999999999999999999988887777654
No 145
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.43 E-value=3.2e-05 Score=75.13 Aligned_cols=41 Identities=17% Similarity=0.131 Sum_probs=31.9
Q ss_pred cccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEee
Q 003795 442 MYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 483 (795)
Q Consensus 442 ~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is 483 (795)
....+++.++.| ++|+||||+|||||+++|++.+ +..+.+.
T Consensus 22 ~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~ 64 (158)
T 1htw_A 22 AEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVK 64 (158)
T ss_dssp HHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCC
T ss_pred HHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEE
Confidence 445556677777 8899999999999999999988 5444443
No 146
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.40 E-value=6.6e-05 Score=78.83 Aligned_cols=67 Identities=22% Similarity=0.385 Sum_probs=42.6
Q ss_pred eEEECCCCCchhHHHHHhhhhcccc-EEEeeccc--e--e-h---hhhcc-----chhhHHhHHHHHHhcCCceeEhHHH
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEAGVN-FFSISASQ--F--V-E---IYVGV-----GASRVRSLYQEAKDNAPSVVFIDEL 519 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el~~~-~~~is~se--~--~-~---~~~g~-----~~~~l~~lf~~ar~~~p~Il~IDEI 519 (795)
++|+||||+|||||+++|++...+. .+.+...+ . . . .++.+ ....++..+..+....|.++++||.
T Consensus 28 v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~~~v~q~~~gl~~~~l~~~la~aL~~~p~illlDEp 107 (261)
T 2eyu_A 28 ILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVIFVGEM 107 (261)
T ss_dssp EEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHHHHCCSEEEESCC
T ss_pred EEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCcceeeeHHHhCCCHHHHHHHHHHHHhhCCCEEEeCCC
Confidence 8999999999999999999977554 33332111 0 0 0 01111 1123444556666678999999997
Q ss_pred H
Q 003795 520 D 520 (795)
Q Consensus 520 D 520 (795)
.
T Consensus 108 ~ 108 (261)
T 2eyu_A 108 R 108 (261)
T ss_dssp C
T ss_pred C
Confidence 3
No 147
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=97.40 E-value=7.4e-05 Score=79.23 Aligned_cols=51 Identities=18% Similarity=0.219 Sum_probs=42.4
Q ss_pred HhccccccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeecc
Q 003795 435 KFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 485 (795)
Q Consensus 435 ~~~~~~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~s 485 (795)
..|.....+.++++.++.| +.|+||||+|||||+++|+|...+..+.+...
T Consensus 29 ~~y~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~ 81 (279)
T 2ihy_A 29 RMKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLF 81 (279)
T ss_dssp EEETTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEET
T ss_pred EEECCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEEC
Confidence 3444445778889999888 88999999999999999999998888877654
No 148
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.40 E-value=0.00012 Score=80.20 Aligned_cols=67 Identities=21% Similarity=0.372 Sum_probs=42.6
Q ss_pred eEEECCCCCchhHHHHHhhhhcccc----EEEee-ccceehh----h-----hccchhhHHhHHHHHHhcCCceeEhHHH
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEAGVN----FFSIS-ASQFVEI----Y-----VGVGASRVRSLYQEAKDNAPSVVFIDEL 519 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el~~~----~~~is-~se~~~~----~-----~g~~~~~l~~lf~~ar~~~p~Il~IDEI 519 (795)
++|+||||+|||||+++|++.+.+. ++.+. ..++... + ++.....+...+..+....|.++++||+
T Consensus 126 i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~PdvillDEp 205 (356)
T 3jvv_A 126 VLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIILVGEM 205 (356)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEEEESCC
T ss_pred EEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEEecCCC
Confidence 8999999999999999999977543 22211 1111100 1 1111122344666677789999999998
Q ss_pred H
Q 003795 520 D 520 (795)
Q Consensus 520 D 520 (795)
.
T Consensus 206 ~ 206 (356)
T 3jvv_A 206 R 206 (356)
T ss_dssp C
T ss_pred C
Confidence 4
No 149
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.32 E-value=0.00011 Score=75.56 Aligned_cols=46 Identities=26% Similarity=0.343 Sum_probs=39.5
Q ss_pred cccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeecc
Q 003795 440 GEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 485 (795)
Q Consensus 440 ~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~s 485 (795)
...+.++++.++.| +.|+||||+|||||+++|+|...+..+.+...
T Consensus 21 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~ 68 (229)
T 2pze_A 21 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHS 68 (229)
T ss_dssp CCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEEC
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEEC
Confidence 34677888898888 88999999999999999999998887777654
No 150
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.30 E-value=0.00013 Score=77.07 Aligned_cols=46 Identities=17% Similarity=0.148 Sum_probs=39.7
Q ss_pred cccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeecc
Q 003795 440 GEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 485 (795)
Q Consensus 440 ~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~s 485 (795)
...+.++++.++.| ++|+||||+|||||+++|+|...+..+.|...
T Consensus 32 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~ 79 (271)
T 2ixe_A 32 VQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLD 79 (271)
T ss_dssp SCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEET
T ss_pred ceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEEC
Confidence 34678889999888 88999999999999999999988887777654
No 151
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=97.29 E-value=0.00015 Score=83.91 Aligned_cols=115 Identities=22% Similarity=0.317 Sum_probs=61.2
Q ss_pred CcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeeccceehhhhccc-----hhhHHhHHHHHHhcC--CceeEhH
Q 003795 447 GVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVG-----ASRVRSLYQEAKDNA--PSVVFID 517 (795)
Q Consensus 447 gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~se~~~~~~g~~-----~~~l~~lf~~ar~~~--p~Il~ID 517 (795)
++.++.| +.|+||||+|||||+++|+|...+..+.+......-.|+.+. ...+...+....... ..-..++
T Consensus 288 ~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~ 367 (538)
T 3ozx_A 288 NGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFE 367 (538)
T ss_dssp CEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCCCEEEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHH
T ss_pred cceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCeeeEeechhcccccCCCHHHHHHHhhhhccchhHHHHH
Confidence 4556666 889999999999999999998877666554322111111111 011112221111100 0000111
Q ss_pred HHH-HHh----hhccCCCCCCcchHHHHHHHHHHhhhcccCCCcEEEE-eccCCCC
Q 003795 518 ELD-AVG----RERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITI-ASTNRPD 567 (795)
Q Consensus 518 EID-~l~----~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVI-atTN~~d 567 (795)
++- .+. ..+....=|||++.+..+...| ...++++++ .+|+..|
T Consensus 368 ~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL------~~~p~lLlLDEPT~gLD 417 (538)
T 3ozx_A 368 EVTKRLNLHRLLESNVNDLSGGELQKLYIAATL------AKEADLYVLDQPSSYLD 417 (538)
T ss_dssp HTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHH------HSCCSEEEEESTTTTCC
T ss_pred HHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHH------HcCCCEEEEeCCccCCC
Confidence 110 000 0111122299999999998887 556777877 7777543
No 152
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.27 E-value=0.00017 Score=73.30 Aligned_cols=33 Identities=18% Similarity=0.134 Sum_probs=26.1
Q ss_pred eEEECCCCCchhHHHHHhhhh--c-------cccEEEeeccc
Q 003795 454 ILLCGPPGVGKTLLAKAVAGE--A-------GVNFFSISASQ 486 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~e--l-------~~~~~~is~se 486 (795)
++|+||||+|||||++.|++. . +...++++...
T Consensus 27 ~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 27 TEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred EEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 899999999999999999984 3 33456666544
No 153
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.27 E-value=0.0004 Score=93.57 Aligned_cols=126 Identities=16% Similarity=0.175 Sum_probs=87.5
Q ss_pred CceEEECCCCCchhHHHHHhhhhccccEEEeeccceehhhhccchhhHHhHHHHHHhcCCceeEhHHHHHHhhhccCCCC
Q 003795 452 GGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKG 531 (795)
Q Consensus 452 ~giLL~GPpGtGKTtLakaLA~el~~~~~~is~se~~~~~~g~~~~~l~~lf~~ar~~~p~Il~IDEID~l~~~r~~~~~ 531 (795)
.|..+.||+|||||++++.||..+|.+++.++|++..+. ..+..+|..+... ++..++||++.+-..
T Consensus 605 ~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d~------~~~g~i~~G~~~~-GaW~cfDEfNrl~~~------ 671 (3245)
T 3vkg_A 605 MGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFDL------QAMSRIFVGLCQC-GAWGCFDEFNRLEER------ 671 (3245)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCCH------HHHHHHHHHHHHH-TCEEEEETTTSSCHH------
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCCH------HHHHHHHhhHhhc-CcEEEehhhhcCCHH------
Confidence 456899999999999999999999999999999875432 3345566666554 457899999876432
Q ss_pred CCcchHHHHHHHHHHhh-------------h-c--ccCCCcEEEEeccCC----CCCCCccccCCCcccceecCCCCCHH
Q 003795 532 SGGQERDATLNQLLVCL-------------D-G--FEGRGNVITIASTNR----PDILDPALVRPGRFDRKIFIPKPGLI 591 (795)
Q Consensus 532 Sgge~~r~~l~~LL~~l-------------d-~--~~~~~~VlVIatTN~----~d~LdpaLlrpgRFd~~I~~~~Pd~~ 591 (795)
.-.++...+..+ . | +.-+.++-|+.|.|+ ...||+.|.. ||- .|.+..||.+
T Consensus 672 -----vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~--lFr-~v~m~~Pd~~ 743 (3245)
T 3vkg_A 672 -----ILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKK--LFR-SMAMIKPDRE 743 (3245)
T ss_dssp -----HHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHT--TEE-EEECCSCCHH
T ss_pred -----HHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHh--hcE-EEEEeCCCHH
Confidence 111222222211 1 1 112345777888885 2478999988 774 6999999998
Q ss_pred HHHHHHH
Q 003795 592 GRMEILK 598 (795)
Q Consensus 592 eR~~Il~ 598 (795)
...+|+-
T Consensus 744 ~i~ei~L 750 (3245)
T 3vkg_A 744 MIAQVML 750 (3245)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8888764
No 154
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.27 E-value=0.00012 Score=76.35 Aligned_cols=44 Identities=27% Similarity=0.333 Sum_probs=37.8
Q ss_pred cccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeeccc
Q 003795 442 MYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQ 486 (795)
Q Consensus 442 ~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~se 486 (795)
.+.++++.++.| +.|+||||+|||||+++|+|...+. +.+....
T Consensus 15 vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g 60 (249)
T 2qi9_C 15 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAG 60 (249)
T ss_dssp TEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETT
T ss_pred EEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECC
Confidence 467788888887 8899999999999999999999888 8886643
No 155
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.26 E-value=0.00042 Score=81.14 Aligned_cols=46 Identities=24% Similarity=0.301 Sum_probs=39.7
Q ss_pred cccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeecc
Q 003795 440 GEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 485 (795)
Q Consensus 440 ~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~s 485 (795)
...++++++.++.| +.|+||||+|||||+++|++...+..+.+...
T Consensus 368 ~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~ 415 (598)
T 3qf4_B 368 KPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVD 415 (598)
T ss_dssp SCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEET
T ss_pred CccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEEC
Confidence 34678888999988 99999999999999999999998888777554
No 156
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.25 E-value=0.00013 Score=75.98 Aligned_cols=49 Identities=29% Similarity=0.419 Sum_probs=39.0
Q ss_pred ccccccccccCcccCCc--eEEECCCCCchhHHHHHhhhh--ccccEEEeecc
Q 003795 437 FTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGE--AGVNFFSISAS 485 (795)
Q Consensus 437 ~~~~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~e--l~~~~~~is~s 485 (795)
|.....+.++++.++.| +.|+||||+|||||+++|+|. ..+..+.+...
T Consensus 13 y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~ 65 (250)
T 2d2e_A 13 IDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLD 65 (250)
T ss_dssp ETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEET
T ss_pred ECCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEEC
Confidence 44445678888999888 889999999999999999997 55666666543
No 157
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.23 E-value=0.0001 Score=76.49 Aligned_cols=45 Identities=18% Similarity=0.198 Sum_probs=37.1
Q ss_pred cccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeec
Q 003795 440 GEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (795)
Q Consensus 440 ~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (795)
...+.++++.++.| +.|+||||+|||||+++|+|...+..+.+..
T Consensus 15 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 61 (243)
T 1mv5_A 15 EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITI 61 (243)
T ss_dssp SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEE
T ss_pred CceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEE
Confidence 34677888999888 8899999999999999999988766555543
No 158
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=97.23 E-value=0.00046 Score=80.46 Aligned_cols=56 Identities=21% Similarity=0.312 Sum_probs=43.2
Q ss_pred HHHHHHHhccc--cccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeec
Q 003795 429 ELEEIVKFFTH--GEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (795)
Q Consensus 429 ~l~~lv~~~~~--~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (795)
+++++...|.. ...++++++.++.| +.|+||||+|||||+++|++...+..+.+..
T Consensus 343 ~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~ 402 (582)
T 3b5x_A 343 DVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICL 402 (582)
T ss_pred EEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEE
Confidence 34444455542 45678899999988 8999999999999999999988776665543
No 159
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=97.22 E-value=0.00033 Score=81.94 Aligned_cols=45 Identities=24% Similarity=0.366 Sum_probs=39.3
Q ss_pred ccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeecc
Q 003795 441 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 485 (795)
Q Consensus 441 ~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~s 485 (795)
..++++++.++.| +.|+||||+|||||+++|+|...+..+.+...
T Consensus 358 ~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~ 404 (595)
T 2yl4_A 358 PIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLD 404 (595)
T ss_dssp EEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEET
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEEC
Confidence 4678899999988 99999999999999999999988887776543
No 160
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=97.22 E-value=0.00016 Score=75.92 Aligned_cols=45 Identities=24% Similarity=0.304 Sum_probs=39.0
Q ss_pred ccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeecc
Q 003795 441 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 485 (795)
Q Consensus 441 ~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~s 485 (795)
..+.++++.++.| +.|+||||+|||||+++|+|...+..+.+...
T Consensus 21 ~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~ 67 (266)
T 2yz2_A 21 KALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYD 67 (266)
T ss_dssp EEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEET
T ss_pred ceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEC
Confidence 4678888999888 88999999999999999999988887777654
No 161
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.22 E-value=0.00013 Score=72.69 Aligned_cols=39 Identities=33% Similarity=0.382 Sum_probs=27.1
Q ss_pred cccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEe
Q 003795 444 RRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSI 482 (795)
Q Consensus 444 ~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~i 482 (795)
.++++.++.+ |+|+||||+||||+++.|++.++.+++..
T Consensus 16 ~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~ 56 (199)
T 3vaa_A 16 ENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDL 56 (199)
T ss_dssp --------CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred CceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcc
Confidence 4455555544 89999999999999999999998877543
No 162
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=97.21 E-value=0.00041 Score=80.84 Aligned_cols=46 Identities=20% Similarity=0.235 Sum_probs=40.0
Q ss_pred cccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeecc
Q 003795 440 GEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 485 (795)
Q Consensus 440 ~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~s 485 (795)
...++++++.++.| +.|+||||+|||||+++|++...+..+.+...
T Consensus 354 ~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~ 401 (578)
T 4a82_A 354 APILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILID 401 (578)
T ss_dssp CCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEET
T ss_pred CcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEEC
Confidence 34678889999988 89999999999999999999998888877554
No 163
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=97.20 E-value=8.2e-05 Score=80.75 Aligned_cols=77 Identities=21% Similarity=0.184 Sum_probs=49.5
Q ss_pred cccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeeccceeh-------h---hhccchhhHHhHHHHHHhcCC
Q 003795 444 RRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVE-------I---YVGVGASRVRSLYQEAKDNAP 511 (795)
Q Consensus 444 ~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~se~~~-------~---~~g~~~~~l~~lf~~ar~~~p 511 (795)
..+++.++.| ++|+||||+|||||+++|++...+..+.+...+..+ . ++.++....+..+..+....|
T Consensus 162 ~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p 241 (330)
T 2pt7_A 162 SAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRP 241 (330)
T ss_dssp HHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCC
T ss_pred hhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhCC
Confidence 3444444444 899999999999999999998866544443322111 0 110012234556667777889
Q ss_pred ceeEhHHHH
Q 003795 512 SVVFIDELD 520 (795)
Q Consensus 512 ~Il~IDEID 520 (795)
.++++||..
T Consensus 242 ~ilildE~~ 250 (330)
T 2pt7_A 242 DRIILGELR 250 (330)
T ss_dssp SEEEECCCC
T ss_pred CEEEEcCCC
Confidence 999999974
No 164
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=97.19 E-value=0.00018 Score=75.74 Aligned_cols=50 Identities=22% Similarity=0.325 Sum_probs=39.2
Q ss_pred hccccccccccCcccCCc--eEEECCCCCchhHHHHHhhhhc--cccEEEeecc
Q 003795 436 FFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEA--GVNFFSISAS 485 (795)
Q Consensus 436 ~~~~~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el--~~~~~~is~s 485 (795)
.|.....+.++++.++.| +.|+||||+|||||+++|+|.. .+..+.+...
T Consensus 29 ~y~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~ 82 (267)
T 2zu0_C 29 SVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFK 82 (267)
T ss_dssp EETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEET
T ss_pred EECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEEC
Confidence 344445678889999888 8899999999999999999973 4555666543
No 165
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.18 E-value=0.00036 Score=76.51 Aligned_cols=108 Identities=19% Similarity=0.228 Sum_probs=59.1
Q ss_pred eEEECCCCCchhHHHHHhhhhc---cccEEEeeccceehh----hhccc--------hhhHHhHHH----HHHhcCCcee
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEI----YVGVG--------ASRVRSLYQ----EAKDNAPSVV 514 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el---~~~~~~is~se~~~~----~~g~~--------~~~l~~lf~----~ar~~~p~Il 514 (795)
++|+||||+|||||+..++..+ +...++++..+.... .+|.. ...+..++. .++...++++
T Consensus 64 ~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~~~~~dlv 143 (356)
T 3hr8_A 64 VEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVRSGVVDLI 143 (356)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHHTSCCSEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhhhcCCCeE
Confidence 8899999999999999999865 445666766543221 01100 011122222 2334678899
Q ss_pred EhHHHHHHhhhccCCCCCCcch----HHHHHHHHHHhhhcccCCCcEEEEec
Q 003795 515 FIDELDAVGRERGLIKGSGGQE----RDATLNQLLVCLDGFEGRGNVITIAS 562 (795)
Q Consensus 515 ~IDEID~l~~~r~~~~~Sgge~----~r~~l~~LL~~ld~~~~~~~VlVIat 562 (795)
+||.+..+.+.....+ ..++. ....+..++..|..+....++.||.+
T Consensus 144 VIDSi~~l~~~~el~g-~~G~~q~~~qar~la~~L~~L~~lak~~~~tVI~i 194 (356)
T 3hr8_A 144 VVDSVAALVPRAEIEG-AMGDMQVGLQARLMSQALRKIAGSVNKSKAVVIFT 194 (356)
T ss_dssp EEECTTTCCCHHHHTT-CCCSSCSSHHHHHHHHHHHHHHHHHHTSSCEEEEE
T ss_pred EehHhhhhcChhhhcc-cchhhHHHHHHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 9999877654111111 11221 22345555555555444455555554
No 166
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.17 E-value=0.00026 Score=70.81 Aligned_cols=33 Identities=24% Similarity=0.246 Sum_probs=27.0
Q ss_pred eEEECCCCCchhHHHHHhhhhccccEEEeeccc
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQ 486 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el~~~~~~is~se 486 (795)
++|+||||+|||||++.+++..+...+.++...
T Consensus 23 ~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 23 TQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 899999999999999999985455666666544
No 167
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=97.16 E-value=0.00016 Score=83.62 Aligned_cols=115 Identities=21% Similarity=0.180 Sum_probs=62.8
Q ss_pred ccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeeccceehhhhccch-----hhHHhHHHHH-HhcCCcee
Q 003795 443 YRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGA-----SRVRSLYQEA-KDNAPSVV 514 (795)
Q Consensus 443 ~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~se~~~~~~g~~~-----~~l~~lf~~a-r~~~p~Il 514 (795)
+...++.++.| +.|+||||+|||||+++|+|...+..+.+.....+ .|+.+.. ..+...+... ......
T Consensus 302 l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~~~i-~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~-- 378 (538)
T 1yqt_A 302 LEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTV-AYKPQYIKADYEGTVYELLSKIDASKLNS-- 378 (538)
T ss_dssp EEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCCCCE-EEECSSCCCCCSSBHHHHHHHHHHHHHTC--
T ss_pred EEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECceE-EEEecCCcCCCCCcHHHHHHhhhccCCCH--
Confidence 34445556666 88999999999999999999876655544321100 0111111 0111111111 000000
Q ss_pred EhHHHHHHhhhcc--------CCCCCCcchHHHHHHHHHHhhhcccCCCcEEEE-eccCCCC
Q 003795 515 FIDELDAVGRERG--------LIKGSGGQERDATLNQLLVCLDGFEGRGNVITI-ASTNRPD 567 (795)
Q Consensus 515 ~IDEID~l~~~r~--------~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVI-atTN~~d 567 (795)
-+.++.+....+ ...=|||++.+..+...+ ....+++++ .+||..|
T Consensus 379 -~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL------~~~p~lLlLDEPt~~LD 433 (538)
T 1yqt_A 379 -NFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATL------LRDADIYLLDEPSAYLD 433 (538)
T ss_dssp -HHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHH------TSCCSEEEEECTTTTCC
T ss_pred -HHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHH------HhCCCEEEEeCCcccCC
Confidence 112222222111 112299999999999888 556778887 8888644
No 168
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=97.15 E-value=0.00042 Score=80.78 Aligned_cols=54 Identities=20% Similarity=0.311 Sum_probs=43.0
Q ss_pred HHHHhccc--cccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeecc
Q 003795 432 EIVKFFTH--GEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 485 (795)
Q Consensus 432 ~lv~~~~~--~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~s 485 (795)
++...|.. ...++++++.++.| +.|+||||+|||||+++|+|...+..+.+...
T Consensus 346 ~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~ 403 (582)
T 3b60_A 346 NVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMD 403 (582)
T ss_dssp EEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEET
T ss_pred EEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEEC
Confidence 33344542 45678899999988 99999999999999999999988887776543
No 169
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.12 E-value=0.00023 Score=69.84 Aligned_cols=33 Identities=36% Similarity=0.602 Sum_probs=27.6
Q ss_pred eEEECCCCCchhHHHHHhhhhccccEEEeeccc
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQ 486 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el~~~~~~is~se 486 (795)
++|+||||+||||+++.|++..+...+.++..+
T Consensus 12 i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~ 44 (191)
T 1zp6_A 12 LLLSGHPGSGKSTIAEALANLPGVPKVHFHSDD 44 (191)
T ss_dssp EEEEECTTSCHHHHHHHHHTCSSSCEEEECTTH
T ss_pred EEEECCCCCCHHHHHHHHHhccCCCeEEEcccc
Confidence 889999999999999999998666666666544
No 170
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.10 E-value=0.00057 Score=79.80 Aligned_cols=46 Identities=13% Similarity=0.190 Sum_probs=39.8
Q ss_pred cccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeecc
Q 003795 440 GEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 485 (795)
Q Consensus 440 ~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~s 485 (795)
...++++++.++.| +.|+||||+|||||+++|++...+..+.+...
T Consensus 356 ~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~ 403 (587)
T 3qf4_A 356 DPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVD 403 (587)
T ss_dssp CCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEES
T ss_pred CcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEEC
Confidence 35678889999988 99999999999999999999998887776543
No 171
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.08 E-value=0.00029 Score=77.01 Aligned_cols=70 Identities=24% Similarity=0.294 Sum_probs=43.5
Q ss_pred eEEECCCCCchhHHHHHhhhhc---cccEEEeeccceehh----hhccchh--------hHHhHHH----HHHhcCCcee
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEI----YVGVGAS--------RVRSLYQ----EAKDNAPSVV 514 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el---~~~~~~is~se~~~~----~~g~~~~--------~l~~lf~----~ar~~~p~Il 514 (795)
++|+||||+|||||+..++... +.....++....... ..|.... ....+++ .++...|+++
T Consensus 64 v~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~~~~~~lI 143 (349)
T 2zr9_A 64 IEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVRSGALDII 143 (349)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTCCSEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHhcCCCCEE
Confidence 8999999999999999998654 445566665442221 1111100 1122222 2335568999
Q ss_pred EhHHHHHHh
Q 003795 515 FIDELDAVG 523 (795)
Q Consensus 515 ~IDEID~l~ 523 (795)
+||++..+.
T Consensus 144 VIDsl~~l~ 152 (349)
T 2zr9_A 144 VIDSVAALV 152 (349)
T ss_dssp EEECGGGCC
T ss_pred EEcChHhhc
Confidence 999998876
No 172
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.07 E-value=0.00035 Score=76.35 Aligned_cols=29 Identities=34% Similarity=0.306 Sum_probs=24.2
Q ss_pred CcccCCc--eEEECCCCCchhHHHHHhhhhc
Q 003795 447 GVRIPGG--ILLCGPPGVGKTLLAKAVAGEA 475 (795)
Q Consensus 447 gl~i~~g--iLL~GPpGtGKTtLakaLA~el 475 (795)
+..++.| +.|+||||+|||||++.+++..
T Consensus 125 ~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 125 GGGIETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp TSSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred cCCCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3445555 8899999999999999999876
No 173
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=97.07 E-value=0.00023 Score=83.45 Aligned_cols=40 Identities=30% Similarity=0.375 Sum_probs=30.8
Q ss_pred ccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEe
Q 003795 443 YRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSI 482 (795)
Q Consensus 443 ~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~i 482 (795)
+...++.+..| +.|+||||+|||||+++|+|.+.+..+.+
T Consensus 372 l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I 413 (607)
T 3bk7_A 372 LEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKV 413 (607)
T ss_dssp EEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCC
T ss_pred EEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEE
Confidence 34445556666 88999999999999999999876654444
No 174
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.02 E-value=0.00034 Score=73.26 Aligned_cols=44 Identities=25% Similarity=0.257 Sum_probs=36.8
Q ss_pred ccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeecc
Q 003795 441 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 485 (795)
Q Consensus 441 ~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~s 485 (795)
..+.++++.++.| ++|+||||+|||||+++|+|...+ .+.+...
T Consensus 34 ~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~ 79 (260)
T 2ghi_A 34 RTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIG 79 (260)
T ss_dssp CSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEET
T ss_pred ceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEEC
Confidence 3677888999888 889999999999999999998764 6766543
No 175
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.01 E-value=0.00018 Score=75.15 Aligned_cols=43 Identities=28% Similarity=0.534 Sum_probs=33.0
Q ss_pred cccccccCcccCC---c--eEEECCCCCchhHHHHHhhhhccccEEEe
Q 003795 440 GEMYRRRGVRIPG---G--ILLCGPPGVGKTLLAKAVAGEAGVNFFSI 482 (795)
Q Consensus 440 ~~~~~~~gl~i~~---g--iLL~GPpGtGKTtLakaLA~el~~~~~~i 482 (795)
...+.++++.+.. | |+|+|++|+||||+++.||+.++.+++..
T Consensus 32 ~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~ 79 (250)
T 3nwj_A 32 QQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLGYTFFDC 79 (250)
T ss_dssp CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred chhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcCCcEEeC
Confidence 3344555555554 4 89999999999999999999998876553
No 176
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.99 E-value=0.00037 Score=67.46 Aligned_cols=35 Identities=14% Similarity=0.285 Sum_probs=30.0
Q ss_pred ceEEECCCCCchhHHHHHhhhhccccEEEeeccce
Q 003795 453 GILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQF 487 (795)
Q Consensus 453 giLL~GPpGtGKTtLakaLA~el~~~~~~is~se~ 487 (795)
-|+|+|++|+||||+++.|+..++.+++.++...+
T Consensus 5 ~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~ 39 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSL 39 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchH
Confidence 38999999999999999999999888877665543
No 177
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=96.95 E-value=0.00075 Score=85.92 Aligned_cols=47 Identities=21% Similarity=0.276 Sum_probs=41.2
Q ss_pred cccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeeccc
Q 003795 440 GEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQ 486 (795)
Q Consensus 440 ~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~se 486 (795)
...++++++.+++| +.|+||+|+|||||+++|.+...+.-+.+..+.
T Consensus 431 ~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG 479 (1321)
T 4f4c_A 431 VPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDG 479 (1321)
T ss_dssp SCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETT
T ss_pred CceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCC
Confidence 34678899999998 999999999999999999999998888776543
No 178
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.91 E-value=0.00053 Score=66.05 Aligned_cols=28 Identities=32% Similarity=0.755 Sum_probs=25.0
Q ss_pred ceEEECCCCCchhHHHHHhhhhccccEE
Q 003795 453 GILLCGPPGVGKTLLAKAVAGEAGVNFF 480 (795)
Q Consensus 453 giLL~GPpGtGKTtLakaLA~el~~~~~ 480 (795)
.++|+||||+||||+++.|++.++.+++
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~~l~~~~i 33 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQQLNMEFY 33 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTTCEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 4899999999999999999999887554
No 179
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.88 E-value=0.00031 Score=77.42 Aligned_cols=67 Identities=22% Similarity=0.371 Sum_probs=42.2
Q ss_pred eEEECCCCCchhHHHHHhhhhcccc-EEEee-ccceeh-------hhhcc-----chhhHHhHHHHHHhcCCceeEhHHH
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEAGVN-FFSIS-ASQFVE-------IYVGV-----GASRVRSLYQEAKDNAPSVVFIDEL 519 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el~~~-~~~is-~se~~~-------~~~g~-----~~~~l~~lf~~ar~~~p~Il~IDEI 519 (795)
++|+||||+|||||+++|++...+. -+.+- .++-.+ .++.+ ....+...+..+....|+++++||+
T Consensus 139 i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L~~~pd~illdE~ 218 (372)
T 2ewv_A 139 ILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVIFVGEM 218 (372)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHHTTSCCSEEEESCC
T ss_pred EEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHHHHhhhCcCEEEECCC
Confidence 8999999999999999999977543 23221 111000 01222 2223344555566678999999998
Q ss_pred H
Q 003795 520 D 520 (795)
Q Consensus 520 D 520 (795)
.
T Consensus 219 ~ 219 (372)
T 2ewv_A 219 R 219 (372)
T ss_dssp C
T ss_pred C
Confidence 3
No 180
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=96.88 E-value=0.00084 Score=82.00 Aligned_cols=34 Identities=21% Similarity=0.198 Sum_probs=27.5
Q ss_pred cccccccCcccCCc--eEEECCCCCchhHHHHHhhh
Q 003795 440 GEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAG 473 (795)
Q Consensus 440 ~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~ 473 (795)
..+..++.+.++.| ++|+||||+|||||+|.++.
T Consensus 660 ~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 660 QYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp SSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHH
T ss_pred ceecccccccCCCCeEEEEECCCCCchHHHHHHHHH
Confidence 34556677777655 88999999999999999975
No 181
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.86 E-value=0.00041 Score=70.40 Aligned_cols=34 Identities=29% Similarity=0.410 Sum_probs=22.6
Q ss_pred cccccCcccCCc--eEEECCCCCchhHHHHHhhhhc
Q 003795 442 MYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEA 475 (795)
Q Consensus 442 ~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el 475 (795)
.+.++++.++.| +.|+||||+|||||+++|++..
T Consensus 12 ~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 12 SGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp ----------CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred cccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 456778888877 8899999999999999999976
No 182
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.85 E-value=0.0006 Score=83.48 Aligned_cols=39 Identities=26% Similarity=0.524 Sum_probs=33.1
Q ss_pred HhccccccccccCcccCCc--eEEECCCCCchhHHHHHhhh
Q 003795 435 KFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAG 473 (795)
Q Consensus 435 ~~~~~~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~ 473 (795)
..|+....+.++++.++.| +.|+||||+|||||+++|++
T Consensus 443 ~~yg~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 443 LAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp EEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH
T ss_pred EEECCEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3455556788889999888 89999999999999999995
No 183
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.84 E-value=0.00049 Score=76.36 Aligned_cols=46 Identities=22% Similarity=0.199 Sum_probs=38.5
Q ss_pred ccccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeecc
Q 003795 439 HGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 485 (795)
Q Consensus 439 ~~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~s 485 (795)
....+.++++.++.| +.|+||||+|||||+++|+|... ..+.|...
T Consensus 33 ~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~ 80 (390)
T 3gd7_A 33 GNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQID 80 (390)
T ss_dssp SCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEES
T ss_pred CeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEEC
Confidence 345678889999988 89999999999999999999876 66666543
No 184
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.79 E-value=0.0014 Score=71.99 Aligned_cols=111 Identities=22% Similarity=0.247 Sum_probs=58.9
Q ss_pred ceEEECCCCCchhHHHHHhhhhc---cccEEEeeccceehhh----hcc-----------chhhHHhHHHH-HHhcCCce
Q 003795 453 GILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEIY----VGV-----------GASRVRSLYQE-AKDNAPSV 513 (795)
Q Consensus 453 giLL~GPpGtGKTtLakaLA~el---~~~~~~is~se~~~~~----~g~-----------~~~~l~~lf~~-ar~~~p~I 513 (795)
-++|+||||+|||+|+..++... +.+++.++...-.... .|. ....+....+. .+...+++
T Consensus 76 li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~~~~~~l 155 (366)
T 1xp8_A 76 ITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVRSGAIDV 155 (366)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTCCSE
T ss_pred EEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHhcCCCCE
Confidence 38899999999999999888654 4566666655422221 111 11112222222 23456889
Q ss_pred eEhHHHHHHhhhccCCCCCCcc---hHHHHHHHHHHhhhcccCCCcEEEEecc
Q 003795 514 VFIDELDAVGRERGLIKGSGGQ---ERDATLNQLLVCLDGFEGRGNVITIAST 563 (795)
Q Consensus 514 l~IDEID~l~~~r~~~~~Sgge---~~r~~l~~LL~~ld~~~~~~~VlVIatT 563 (795)
|+||.+..+.......+..+.. .....+..++..|..+....++.||++.
T Consensus 156 VVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~n 208 (366)
T 1xp8_A 156 VVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFIN 208 (366)
T ss_dssp EEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEEE
T ss_pred EEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEE
Confidence 9999998875321110000110 1112345555555444445566666553
No 185
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.78 E-value=0.0013 Score=77.07 Aligned_cols=29 Identities=31% Similarity=0.440 Sum_probs=25.4
Q ss_pred eEEECCCCCchhHHHHHhhhhccccEEEe
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEAGVNFFSI 482 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el~~~~~~i 482 (795)
+.|+||||+|||||+++|+|.+.+..+.+
T Consensus 106 ~~LvGpNGaGKSTLLkiL~Gll~P~~G~i 134 (608)
T 3j16_B 106 LGLVGTNGIGKSTALKILAGKQKPNLGRF 134 (608)
T ss_dssp EEEECCTTSSHHHHHHHHHTSSCCCTTTT
T ss_pred EEEECCCCChHHHHHHHHhcCCCCCCceE
Confidence 88999999999999999999887665544
No 186
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.78 E-value=0.00056 Score=66.71 Aligned_cols=31 Identities=26% Similarity=0.303 Sum_probs=27.2
Q ss_pred CceEEECCCCCchhHHHHHhhhhccccEEEe
Q 003795 452 GGILLCGPPGVGKTLLAKAVAGEAGVNFFSI 482 (795)
Q Consensus 452 ~giLL~GPpGtGKTtLakaLA~el~~~~~~i 482 (795)
..|+|+||+|+||||+++.||..++.+++..
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~l~~~~i~~ 36 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKLTKRILYDS 36 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 3589999999999999999999998877643
No 187
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.78 E-value=0.00053 Score=70.68 Aligned_cols=38 Identities=16% Similarity=0.062 Sum_probs=24.8
Q ss_pred ccccccCcccCCc--eEEECCCCCchhHHHHHhhhhcccc
Q 003795 441 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVN 478 (795)
Q Consensus 441 ~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~ 478 (795)
..+.++++.++.| +.|.||+|+|||||++.|++.+|..
T Consensus 13 ~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 13 LGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp ----------CCSEEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred eeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 3456677788777 8899999999999999999987643
No 188
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.76 E-value=0.0016 Score=75.16 Aligned_cols=40 Identities=35% Similarity=0.470 Sum_probs=30.7
Q ss_pred ccccCcccC-Cc--eEEECCCCCchhHHHHHhhhhccccEEEe
Q 003795 443 YRRRGVRIP-GG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSI 482 (795)
Q Consensus 443 ~~~~gl~i~-~g--iLL~GPpGtGKTtLakaLA~el~~~~~~i 482 (795)
|+-.++..| .| +.|+||||+|||||+|+|+|.+.+..+.+
T Consensus 14 f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i 56 (538)
T 3ozx_A 14 FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDP 56 (538)
T ss_dssp CEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCT
T ss_pred eeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCcc
Confidence 344456655 34 88999999999999999999887665544
No 189
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.76 E-value=0.00067 Score=64.94 Aligned_cols=30 Identities=27% Similarity=0.244 Sum_probs=26.5
Q ss_pred eEEECCCCCchhHHHHHhhhhccccEEEee
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 483 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el~~~~~~is 483 (795)
|+|.||+|+||||+++.|+..++.+++..+
T Consensus 4 i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 4 IILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 789999999999999999999988776544
No 190
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.75 E-value=0.00025 Score=76.15 Aligned_cols=47 Identities=19% Similarity=0.276 Sum_probs=36.1
Q ss_pred HHHHHHHHhccccccccccCcccCCc--eEEECCCCCchhHHHHHhhhhc
Q 003795 428 LELEEIVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEA 475 (795)
Q Consensus 428 ~~l~~lv~~~~~~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el 475 (795)
+.++++...|. ...++++++.++.| ++|+||||+|||||+++|++.+
T Consensus 102 i~~~~vs~~y~-~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 102 FNYQNIELITF-INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp HHHTTCCHHHH-HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEEEEEEcC-hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 34444444443 34567778888887 8999999999999999999987
No 191
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=96.75 E-value=0.0012 Score=83.93 Aligned_cols=45 Identities=16% Similarity=0.227 Sum_probs=39.9
Q ss_pred ccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeecc
Q 003795 441 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 485 (795)
Q Consensus 441 ~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~s 485 (795)
..++++++.++.| +.|+||+|+|||||+++|++...+.-+.+...
T Consensus 404 ~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~ 450 (1284)
T 3g5u_A 404 QILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSID 450 (1284)
T ss_dssp CSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEET
T ss_pred cceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEC
Confidence 4788899999988 99999999999999999999998887777554
No 192
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.74 E-value=0.0014 Score=76.72 Aligned_cols=39 Identities=26% Similarity=0.298 Sum_probs=31.3
Q ss_pred cccccCcccCCc-------eEEECCCCCchhHHHHHhhhhccccEE
Q 003795 442 MYRRRGVRIPGG-------ILLCGPPGVGKTLLAKAVAGEAGVNFF 480 (795)
Q Consensus 442 ~~~~~gl~i~~g-------iLL~GPpGtGKTtLakaLA~el~~~~~ 480 (795)
.+.++++.+..| +.|+||||+|||||+++|+|...+..+
T Consensus 362 ~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G 407 (608)
T 3j16_B 362 TQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEG 407 (608)
T ss_dssp ECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBC
T ss_pred ccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCC
Confidence 345666777766 799999999999999999998765433
No 193
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.73 E-value=0.00088 Score=74.57 Aligned_cols=110 Identities=17% Similarity=0.201 Sum_probs=56.1
Q ss_pred eEEECCCCCchhHHHHHhhh--hc-------cccEEEeeccceehh--------hhccch-------------------h
Q 003795 454 ILLCGPPGVGKTLLAKAVAG--EA-------GVNFFSISASQFVEI--------YVGVGA-------------------S 497 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~--el-------~~~~~~is~se~~~~--------~~g~~~-------------------~ 497 (795)
++|+||||+|||||++.++- .. +...++++..+.... .+|... .
T Consensus 181 ~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~~~~~~~~~ 260 (400)
T 3lda_A 181 TELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAYNADHQLR 260 (400)
T ss_dssp EEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSHHHHHH
T ss_pred EEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEeccCChHHHHH
Confidence 89999999999999996652 22 233666665542110 011100 0
Q ss_pred hHHhHHHHHHhcCCceeEhHHHHHHhhhccCCCCCCc-chHHHHHHHHHHhhhcccCCCcEEEEeccCC
Q 003795 498 RVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGG-QERDATLNQLLVCLDGFEGRGNVITIASTNR 565 (795)
Q Consensus 498 ~l~~lf~~ar~~~p~Il~IDEID~l~~~r~~~~~Sgg-e~~r~~l~~LL~~ld~~~~~~~VlVIatTN~ 565 (795)
.+..+...+....|.+++||++-.+..... .+.++ ..+...+..++..|..+....++.||.+++.
T Consensus 261 ~l~~~~~~l~~~~~~llVIDs~t~~~~~~~--sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv 327 (400)
T 3lda_A 261 LLDAAAQMMSESRFSLIVVDSVMALYRTDF--SGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQV 327 (400)
T ss_dssp HHHHHHHHHHHSCEEEEEEETGGGGCC--------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred HHHHHHHHHHhcCCceEEecchhhhCchhh--cCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEee
Confidence 111222333446788999999877654311 11111 1222334555555554444445566665543
No 194
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.71 E-value=0.0014 Score=71.93 Aligned_cols=77 Identities=23% Similarity=0.329 Sum_probs=46.9
Q ss_pred cccCCceEEECCCCCchhHHHHHhhhhc---cccEEEeeccceehh----hhcc-----------chhhHHhHHHH-HHh
Q 003795 448 VRIPGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEI----YVGV-----------GASRVRSLYQE-AKD 508 (795)
Q Consensus 448 l~i~~giLL~GPpGtGKTtLakaLA~el---~~~~~~is~se~~~~----~~g~-----------~~~~l~~lf~~-ar~ 508 (795)
+....-++|+||||+|||+|+..++..+ +...+.++.....+. ..|. ....+..+... ++.
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~~ 139 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARS 139 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHhc
Confidence 3333338999999999999999998754 456667776432221 0111 11112223322 234
Q ss_pred cCCceeEhHHHHHHhh
Q 003795 509 NAPSVVFIDELDAVGR 524 (795)
Q Consensus 509 ~~p~Il~IDEID~l~~ 524 (795)
..+++++||.+..+..
T Consensus 140 ~~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 140 GAVDVIVVDSVAALTP 155 (356)
T ss_dssp TCCSEEEEECGGGCCC
T ss_pred cCCCEEEEcCHHHhcc
Confidence 6788999999987753
No 195
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.70 E-value=0.00073 Score=66.40 Aligned_cols=29 Identities=41% Similarity=0.793 Sum_probs=25.2
Q ss_pred eEEECCCCCchhHHHHHhhhh-ccccEEEe
Q 003795 454 ILLCGPPGVGKTLLAKAVAGE-AGVNFFSI 482 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~e-l~~~~~~i 482 (795)
|+|+|++|+||||+++.|+.. ++.+++.+
T Consensus 13 I~l~G~~GsGKSTv~~~La~~l~g~~~id~ 42 (184)
T 1y63_A 13 ILITGTPGTGKTSMAEMIAAELDGFQHLEV 42 (184)
T ss_dssp EEEECSTTSSHHHHHHHHHHHSTTEEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCEEeeH
Confidence 899999999999999999998 67666543
No 196
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.67 E-value=0.00067 Score=66.36 Aligned_cols=30 Identities=33% Similarity=0.501 Sum_probs=25.9
Q ss_pred CceEEECCCCCchhHHHHHhhhhccccEEE
Q 003795 452 GGILLCGPPGVGKTLLAKAVAGEAGVNFFS 481 (795)
Q Consensus 452 ~giLL~GPpGtGKTtLakaLA~el~~~~~~ 481 (795)
.-|+|.|+||+||||+++.|+..++.+++.
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~~l~~~~i~ 35 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALATGLRLPLLS 35 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHTCCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCeEec
Confidence 348999999999999999999988876554
No 197
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.66 E-value=0.0015 Score=71.08 Aligned_cols=108 Identities=21% Similarity=0.205 Sum_probs=58.5
Q ss_pred eEEECCCCCchhHHHHHhhhhc---------cccEEEeeccceehh--------hhccc---------------hhhH--
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEA---------GVNFFSISASQFVEI--------YVGVG---------------ASRV-- 499 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el---------~~~~~~is~se~~~~--------~~g~~---------------~~~l-- 499 (795)
++|+||||+|||+|+..+|... +...++++....... ..|.. ...+
T Consensus 125 ~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~~~~e~~~~ 204 (343)
T 1v5w_A 125 TEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYTSEHQME 204 (343)
T ss_dssp EEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSTTHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeecCCHHHHHH
Confidence 8899999999999999998752 345667766542110 01110 1111
Q ss_pred --HhHHHHHHh--cCCceeEhHHHHHHhhhccCCCCCCc-chHHHHHHHHHHhhhcccCCCcEEEEecc
Q 003795 500 --RSLYQEAKD--NAPSVVFIDELDAVGRERGLIKGSGG-QERDATLNQLLVCLDGFEGRGNVITIAST 563 (795)
Q Consensus 500 --~~lf~~ar~--~~p~Il~IDEID~l~~~r~~~~~Sgg-e~~r~~l~~LL~~ld~~~~~~~VlVIatT 563 (795)
..+...++. ..+.+++||.+..+...... +.+. ......+..++..+..+....++.||.++
T Consensus 205 ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~--~~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~n 271 (343)
T 1v5w_A 205 LLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFS--GRGELAERQQKLAQMLSRLQKISEEYNVAVFVTN 271 (343)
T ss_dssp HHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCC--GGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred HHHHHHHHHHhcCCCccEEEEechHHHHHHHhc--ccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEe
Confidence 112233444 66889999999887643211 0011 11112345555555444444455555544
No 198
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.66 E-value=0.0011 Score=69.47 Aligned_cols=22 Identities=36% Similarity=0.534 Sum_probs=20.1
Q ss_pred eEEECCCCCchhHHHHHhhhhc
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEA 475 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el 475 (795)
++|+||||+|||||++.+++.+
T Consensus 33 ~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 33 GALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHH
Confidence 8999999999999999998744
No 199
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.64 E-value=0.00076 Score=65.42 Aligned_cols=29 Identities=34% Similarity=0.557 Sum_probs=25.8
Q ss_pred ceEEECCCCCchhHHHHHhhhhccccEEE
Q 003795 453 GILLCGPPGVGKTLLAKAVAGEAGVNFFS 481 (795)
Q Consensus 453 giLL~GPpGtGKTtLakaLA~el~~~~~~ 481 (795)
.|+|+||||+||||+++.||..++.+++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d 34 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLD 34 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEc
Confidence 38999999999999999999999877654
No 200
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.63 E-value=0.001 Score=66.19 Aligned_cols=26 Identities=42% Similarity=0.773 Sum_probs=23.3
Q ss_pred eEEECCCCCchhHHHHHhhhhccccE
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEAGVNF 479 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el~~~~ 479 (795)
++|+||||+||||+++.|++.+|..+
T Consensus 32 i~l~G~~GsGKSTl~~~L~~~~g~~~ 57 (200)
T 4eun_A 32 VVVMGVSGSGKTTIAHGVADETGLEF 57 (200)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHCCEE
T ss_pred EEEECCCCCCHHHHHHHHHHhhCCeE
Confidence 88999999999999999999886543
No 201
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.61 E-value=0.0017 Score=69.94 Aligned_cols=107 Identities=19% Similarity=0.186 Sum_probs=59.4
Q ss_pred eEEECCCCCchhHHHHHhhhhc---------cccEEEeecccee--hh------hhccc---------------hh----
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEA---------GVNFFSISASQFV--EI------YVGVG---------------AS---- 497 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el---------~~~~~~is~se~~--~~------~~g~~---------------~~---- 497 (795)
++|+||||+|||+|+..++... +...++++..... .. ..|.. ..
T Consensus 110 ~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~ 189 (324)
T 2z43_A 110 TEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAINTDHQIA 189 (324)
T ss_dssp EEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSHHHHHH
T ss_pred EEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCCCHHHHHH
Confidence 8999999999999999998754 4456677665421 10 01110 01
Q ss_pred hHHhHHHHHHh-cCCceeEhHHHHHHhhhccCCCCCCcc-hHHHHHHHHHHhhhcccCCCcEEEEec
Q 003795 498 RVRSLYQEAKD-NAPSVVFIDELDAVGRERGLIKGSGGQ-ERDATLNQLLVCLDGFEGRGNVITIAS 562 (795)
Q Consensus 498 ~l~~lf~~ar~-~~p~Il~IDEID~l~~~r~~~~~Sgge-~~r~~l~~LL~~ld~~~~~~~VlVIat 562 (795)
.+..+...++. ..+.+++||.+..+...... +.+.. .....+..++..+..+....++.||.+
T Consensus 190 ~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~--~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~ 254 (324)
T 2z43_A 190 IVDDLQELVSKDPSIKLIVVDSVTSHFRAEYP--GRENLAVRQQKLNKHLHQLTRLAEVYDIAVIIT 254 (324)
T ss_dssp HHHHHHHHHHHCTTEEEEEETTTTHHHHHHSC--TTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHHHhccCCCEEEEeCcHHHhhhhhc--CcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEE
Confidence 11223333444 67889999999888643211 11111 112245555555554444445555554
No 202
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.61 E-value=0.0012 Score=68.50 Aligned_cols=37 Identities=35% Similarity=0.468 Sum_probs=29.7
Q ss_pred CCceEEECCCCCchhHHHHHhhhhccccEEEeeccce
Q 003795 451 PGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQF 487 (795)
Q Consensus 451 ~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~se~ 487 (795)
|..++|+|+||+||||+++.|+..++...+.++...+
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 3448999999999999999999998765566666544
No 203
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=96.58 E-value=0.0019 Score=79.02 Aligned_cols=31 Identities=13% Similarity=0.116 Sum_probs=25.2
Q ss_pred cccccCcccCCc--eEEECCCCCchhHHHHHhh
Q 003795 442 MYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVA 472 (795)
Q Consensus 442 ~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA 472 (795)
...++.+.+..| ++|+||||+||||++|.++
T Consensus 651 v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ia 683 (934)
T 3thx_A 651 IPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTG 683 (934)
T ss_dssp CCEEEEEETTTBCEEEEECCTTSSHHHHHHHHH
T ss_pred ecccceeecCCCeEEEEECCCCCCHHHHHHHHH
Confidence 445666666655 8899999999999999994
No 204
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.58 E-value=0.00093 Score=66.09 Aligned_cols=23 Identities=30% Similarity=0.601 Sum_probs=21.3
Q ss_pred eEEECCCCCchhHHHHHhhhhcc
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEAG 476 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el~ 476 (795)
+.|+||||+|||||++.|++...
T Consensus 10 i~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 10 FIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHHhhCC
Confidence 88999999999999999999853
No 205
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=96.57 E-value=0.0041 Score=69.97 Aligned_cols=139 Identities=19% Similarity=0.223 Sum_probs=86.7
Q ss_pred ceeEhHHHHHHhhhccCCCCCCcchHH-HHHHHHHHhhhcc--------cCCCcEEEEecc-----CCCCCCCccccCCC
Q 003795 512 SVVFIDELDAVGRERGLIKGSGGQERD-ATLNQLLVCLDGF--------EGRGNVITIAST-----NRPDILDPALVRPG 577 (795)
Q Consensus 512 ~Il~IDEID~l~~~r~~~~~Sgge~~r-~~l~~LL~~ld~~--------~~~~~VlVIatT-----N~~d~LdpaLlrpg 577 (795)
+++++||||+++.... +++++... -+...||..+++. .+.++|++|+|. |..+ +-|+|+.
T Consensus 252 ~il~~DEidki~~~~~---~~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~~~d-lipel~~-- 325 (444)
T 1g41_A 252 GIVFIDEIDKICKKGE---YSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSD-LIPELQG-- 325 (444)
T ss_dssp CEEEEETGGGGSCCSS---CSSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCGGG-SCHHHHT--
T ss_pred CeeeHHHHHHHhhccC---CCCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccCChhh-cchHHhc--
Confidence 4899999999975422 12333332 3677888888863 246789999887 5555 4478877
Q ss_pred cccceecCCCCCHHHHHHHHH---HHH--------ccCCCC---ChhhHHHHHh-------hCCCCcHHHHHHHHHHHHH
Q 003795 578 RFDRKIFIPKPGLIGRMEILK---VHA--------RKKPMA---DDVDYLAVAS-------MTDGMVGAELANIVEVAAI 636 (795)
Q Consensus 578 RFd~~I~~~~Pd~~eR~~Il~---~~l--------~~~~~~---~d~dl~~LA~-------~t~G~sgadL~~lv~~A~~ 636 (795)
||+.+|.|+.++.++..+|+. .++ ...... .+.-+..++. .|...-.+.|..++..++.
T Consensus 326 R~~i~i~l~~lt~~e~~~Il~~~~~~l~~q~~~~~~~~~~~l~~~~~al~~i~~~a~~~~~~t~~~GaR~L~~~ie~~~~ 405 (444)
T 1g41_A 326 RLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMD 405 (444)
T ss_dssp TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHH
T ss_pred ccceeeeCCCCCHHHHHHHHHHHHHhHHHHHHHHhcccCceEEECHHHHHHHHHHHHHhccCCccCCchHHHHHHHHHHH
Confidence 999999999999999999993 111 111111 2222444443 3455556666666555544
Q ss_pred HHHHc------CCCccCHHHHHHHHH
Q 003795 637 NMMRD------GRTEITTDDLLQAAQ 656 (795)
Q Consensus 637 ~A~~~------~~~~It~edl~~Al~ 656 (795)
.+... ....||.+++...+.
T Consensus 406 ~~~~~~~~~~~~~~~i~~~~v~~~l~ 431 (444)
T 1g41_A 406 KISFSASDMNGQTVNIDAAYVADALG 431 (444)
T ss_dssp HHHHHGGGCTTCEEEECHHHHHHHHT
T ss_pred HHHhhccccCCCeEEEeHHHHHHhcC
Confidence 43322 122477777776543
No 206
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=96.55 E-value=0.0016 Score=82.62 Aligned_cols=45 Identities=16% Similarity=0.201 Sum_probs=39.6
Q ss_pred ccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeecc
Q 003795 441 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 485 (795)
Q Consensus 441 ~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~s 485 (795)
..++++++.++.| +.|+||+|+|||||+++|++...+.-+.+...
T Consensus 1047 ~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~ 1093 (1284)
T 3g5u_A 1047 PVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLD 1093 (1284)
T ss_dssp CSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESS
T ss_pred eeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEEC
Confidence 4678899999988 99999999999999999999988888777554
No 207
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.52 E-value=0.0012 Score=68.73 Aligned_cols=31 Identities=32% Similarity=0.457 Sum_probs=27.3
Q ss_pred eEEECCCCCchhHHHHHhhhhccccEEEeec
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (795)
++|+||||+|||||++.||+.++..++..+.
T Consensus 4 i~I~G~~GSGKSTla~~La~~~~~~~i~~D~ 34 (253)
T 2ze6_A 4 HLIYGPTCSGKTDMAIQIAQETGWPVVALDR 34 (253)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred EEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence 7899999999999999999999887766543
No 208
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.51 E-value=0.0005 Score=78.94 Aligned_cols=67 Identities=21% Similarity=0.257 Sum_probs=42.2
Q ss_pred ceEEECCCCCchhHHHHHhhhhccccEEEeeccceehhh--------------hccchhhHHhHHHHHHhcCCceeEhHH
Q 003795 453 GILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIY--------------VGVGASRVRSLYQEAKDNAPSVVFIDE 518 (795)
Q Consensus 453 giLL~GPpGtGKTtLakaLA~el~~~~~~is~se~~~~~--------------~g~~~~~l~~lf~~ar~~~p~Il~IDE 518 (795)
+++|+||||+|||||+++|++.+.+..+.+...+..+.. ++.....+..+...+.+..|+++++.|
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~~~LR~~PD~iivgE 341 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLRAALRQRPDYIIVGE 341 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHHTTGGGCCSEEEESC
T ss_pred EEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHHHhhccCCCeEEeCC
Confidence 389999999999999999999886554433322211100 011111233445555567899888887
Q ss_pred H
Q 003795 519 L 519 (795)
Q Consensus 519 I 519 (795)
+
T Consensus 342 i 342 (511)
T 2oap_1 342 V 342 (511)
T ss_dssp C
T ss_pred c
Confidence 6
No 209
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.51 E-value=0.0011 Score=63.95 Aligned_cols=27 Identities=33% Similarity=0.516 Sum_probs=23.8
Q ss_pred eEEECCCCCchhHHHHHhhhhccccEE
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEAGVNFF 480 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el~~~~~ 480 (795)
++|+||||+||||+++.|++.++..++
T Consensus 11 i~l~G~~GsGKSTl~~~l~~~~g~~~i 37 (175)
T 1knq_A 11 YVLMGVSGSGKSAVASEVAHQLHAAFL 37 (175)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHTCEEE
T ss_pred EEEEcCCCCCHHHHHHHHHHhhCcEEE
Confidence 889999999999999999998875543
No 210
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.49 E-value=0.0011 Score=63.01 Aligned_cols=27 Identities=41% Similarity=0.666 Sum_probs=23.6
Q ss_pred eEEECCCCCchhHHHHHhhhhccccEEE
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEAGVNFFS 481 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el~~~~~~ 481 (795)
|+|+||||+||||+++.| ..++.+++.
T Consensus 4 I~l~G~~GsGKsT~a~~L-~~~g~~~i~ 30 (179)
T 3lw7_A 4 ILITGMPGSGKSEFAKLL-KERGAKVIV 30 (179)
T ss_dssp EEEECCTTSCHHHHHHHH-HHTTCEEEE
T ss_pred EEEECCCCCCHHHHHHHH-HHCCCcEEE
Confidence 789999999999999999 777777554
No 211
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.49 E-value=0.0012 Score=64.43 Aligned_cols=29 Identities=31% Similarity=0.617 Sum_probs=26.0
Q ss_pred ceEEECCCCCchhHHHHHhhhhccccEEE
Q 003795 453 GILLCGPPGVGKTLLAKAVAGEAGVNFFS 481 (795)
Q Consensus 453 giLL~GPpGtGKTtLakaLA~el~~~~~~ 481 (795)
.|+|+|+||+||||+++.|+..++.+++.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id 32 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALGVGLLD 32 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTCCEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCEEe
Confidence 38999999999999999999999887654
No 212
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.48 E-value=0.0012 Score=65.58 Aligned_cols=30 Identities=33% Similarity=0.640 Sum_probs=25.8
Q ss_pred CceEEECCCCCchhHHHHHhhhhccccEEE
Q 003795 452 GGILLCGPPGVGKTLLAKAVAGEAGVNFFS 481 (795)
Q Consensus 452 ~giLL~GPpGtGKTtLakaLA~el~~~~~~ 481 (795)
.-|+|+|++|+||||+++.|++.++..++.
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~lg~~~i~ 48 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEACGYPFIE 48 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHHTCCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCEEEe
Confidence 348999999999999999999998766544
No 213
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=96.48 E-value=0.012 Score=70.89 Aligned_cols=34 Identities=18% Similarity=0.209 Sum_probs=26.6
Q ss_pred cccccccCcccCCc--eEEECCCCCchhHHHHHhhhh
Q 003795 440 GEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGE 474 (795)
Q Consensus 440 ~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~e 474 (795)
.....++.+. +.| ++|+||||+|||||+|+|++.
T Consensus 595 ~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 595 PFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp CCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHH
Confidence 3445566666 444 889999999999999999974
No 214
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.48 E-value=0.00097 Score=66.35 Aligned_cols=23 Identities=35% Similarity=0.352 Sum_probs=21.5
Q ss_pred eEEECCCCCchhHHHHHhhhhcc
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEAG 476 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el~ 476 (795)
+.|+||+|+||||++++|++.++
T Consensus 28 i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 28 IWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 88999999999999999999873
No 215
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.48 E-value=0.0039 Score=63.79 Aligned_cols=69 Identities=16% Similarity=0.176 Sum_probs=40.7
Q ss_pred eEEECCCCCchhHHHHHhhhhc---cccEEEeeccce------ehhhhccc-----hhhHHhHHHHHHh----cCCceeE
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQF------VEIYVGVG-----ASRVRSLYQEAKD----NAPSVVF 515 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el---~~~~~~is~se~------~~~~~g~~-----~~~l~~lf~~ar~----~~p~Il~ 515 (795)
++++||+|+||||++-.++..+ +...+.+....- +....|.. ......+++.+.. ..+++|+
T Consensus 15 ~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~~~~~dvVi 94 (223)
T 2b8t_A 15 EFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSRTGTSLPSVEVESAPEILNYIMSNSFNDETKVIG 94 (223)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTSCTTCCEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHhcCCCccccccCCHHHHHHHHHHHhhCCCCCEEE
Confidence 7789999999999888777654 344444432210 00011110 0112346666654 3478999
Q ss_pred hHHHHHH
Q 003795 516 IDELDAV 522 (795)
Q Consensus 516 IDEID~l 522 (795)
|||+..+
T Consensus 95 IDEaQ~l 101 (223)
T 2b8t_A 95 IDEVQFF 101 (223)
T ss_dssp ECSGGGS
T ss_pred EecCccC
Confidence 9999764
No 216
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.47 E-value=0.0011 Score=66.27 Aligned_cols=28 Identities=25% Similarity=0.512 Sum_probs=22.7
Q ss_pred ccCCc--eEEECCCCCchhHHHHHhhhhcc
Q 003795 449 RIPGG--ILLCGPPGVGKTLLAKAVAGEAG 476 (795)
Q Consensus 449 ~i~~g--iLL~GPpGtGKTtLakaLA~el~ 476 (795)
.++.| +.|+||||+|||||+++|++.+.
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 45555 88999999999999999999874
No 217
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.45 E-value=0.0015 Score=63.60 Aligned_cols=30 Identities=47% Similarity=0.849 Sum_probs=26.0
Q ss_pred CceEEECCCCCchhHHHHHhhhhccccEEE
Q 003795 452 GGILLCGPPGVGKTLLAKAVAGEAGVNFFS 481 (795)
Q Consensus 452 ~giLL~GPpGtGKTtLakaLA~el~~~~~~ 481 (795)
..|+|+|++|+||||+++.|+..++..++.
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~~~~~~~~~ 41 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELASKSGLKYIN 41 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHCCEEEE
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHhCCeEEE
Confidence 348999999999999999999998876654
No 218
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.45 E-value=0.002 Score=69.37 Aligned_cols=71 Identities=18% Similarity=0.265 Sum_probs=43.4
Q ss_pred eEEECCCCCchhHHHHHhhhhc-----cccEEEeeccceehh----hhccch--------hhHHhH-H---HH---HHhc
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEA-----GVNFFSISASQFVEI----YVGVGA--------SRVRSL-Y---QE---AKDN 509 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el-----~~~~~~is~se~~~~----~~g~~~--------~~l~~l-f---~~---ar~~ 509 (795)
++|+||||+|||||+-.++... +...++++..+-... -+|... .....+ + +. ++..
T Consensus 31 teI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l~~i~~~ 110 (333)
T 3io5_A 31 LILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQLDAIERG 110 (333)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHHHHTCCTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHHHHHhhcc
Confidence 7899999999999976665533 445677776543321 111111 111222 2 22 2456
Q ss_pred CCceeEhHHHHHHhh
Q 003795 510 APSVVFIDELDAVGR 524 (795)
Q Consensus 510 ~p~Il~IDEID~l~~ 524 (795)
.|++++||-|..+.+
T Consensus 111 ~~~lvVIDSI~aL~~ 125 (333)
T 3io5_A 111 EKVVVFIDSLGNLAS 125 (333)
T ss_dssp CCEEEEEECSTTCBC
T ss_pred CceEEEEeccccccc
Confidence 799999999988754
No 219
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=96.45 E-value=0.0012 Score=83.99 Aligned_cols=43 Identities=21% Similarity=0.261 Sum_probs=37.2
Q ss_pred ccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEee
Q 003795 441 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 483 (795)
Q Consensus 441 ~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is 483 (795)
..++++++.+++| +.|+||+|+|||||+++|.+...+.-|.|.
T Consensus 1093 ~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~ 1137 (1321)
T 4f4c_A 1093 EILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIF 1137 (1321)
T ss_dssp CSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEE
T ss_pred ccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEE
Confidence 4678899999988 999999999999999999998877655544
No 220
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.45 E-value=0.013 Score=60.12 Aligned_cols=31 Identities=32% Similarity=0.455 Sum_probs=23.6
Q ss_pred eEEECCCCCchhHHHHHhhhhc---cccEEEeec
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEA---GVNFFSISA 484 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el---~~~~~~is~ 484 (795)
+++.|++|+||||++-.+|..+ |..+..++.
T Consensus 9 I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~ 42 (228)
T 2r8r_A 9 VFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVV 42 (228)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEe
Confidence 8999999999999988888754 544443333
No 221
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.43 E-value=0.0013 Score=70.41 Aligned_cols=34 Identities=21% Similarity=0.178 Sum_probs=27.0
Q ss_pred ccCcccCCc--eEEECCCCCchhHHHHHhhhhcccc
Q 003795 445 RRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVN 478 (795)
Q Consensus 445 ~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~ 478 (795)
.+++.+..| ++|+||||+||||+++.||+.+.+.
T Consensus 92 ~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~ 127 (302)
T 3b9q_A 92 ELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNE 127 (302)
T ss_dssp SCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 345555555 8899999999999999999987543
No 222
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.40 E-value=0.0018 Score=64.89 Aligned_cols=33 Identities=24% Similarity=0.410 Sum_probs=27.0
Q ss_pred eEEECCCCCchhHHHHHhhhhccc---cEEEeeccc
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEAGV---NFFSISASQ 486 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el~~---~~~~is~se 486 (795)
+.|.||||+|||||+++|++.+.+ ..+.+....
T Consensus 25 v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~ 60 (208)
T 3c8u_A 25 VALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDG 60 (208)
T ss_dssp EEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGG
T ss_pred EEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCC
Confidence 889999999999999999998863 456665543
No 223
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.40 E-value=0.0027 Score=82.67 Aligned_cols=118 Identities=19% Similarity=0.187 Sum_probs=72.4
Q ss_pred cccCCceEEECCCCCchhHHHHHhhhhc---cccEEEeeccceehhh----hcc--------chhhHHhHHHHHHh----
Q 003795 448 VRIPGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEIY----VGV--------GASRVRSLYQEAKD---- 508 (795)
Q Consensus 448 l~i~~giLL~GPpGtGKTtLakaLA~el---~~~~~~is~se~~~~~----~g~--------~~~~l~~lf~~ar~---- 508 (795)
+.....++|.|+||+|||+|+..+|..+ +.++++++..+..... +|. ....+..++..++.
T Consensus 729 l~~G~lilIaG~PG~GKTtLalqlA~~~a~~g~~VlyiS~Ees~~ql~A~rlG~~~~~l~i~~~~~i~~i~~~~r~l~~~ 808 (2050)
T 3cmu_A 729 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARS 808 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECCCcHHHHHHHHcCCCccceEEecCCCHHHHHHHHHHHhhc
Confidence 4333448999999999999999999866 3458888876644432 121 11223445555443
Q ss_pred cCCceeEhHHHHHHhh-hccC-CCCCCcc-hHHHHHHHHHHhhhcccCCCcEEEEeccCC
Q 003795 509 NAPSVVFIDELDAVGR-ERGL-IKGSGGQ-ERDATLNQLLVCLDGFEGRGNVITIASTNR 565 (795)
Q Consensus 509 ~~p~Il~IDEID~l~~-~r~~-~~~Sgge-~~r~~l~~LL~~ld~~~~~~~VlVIatTN~ 565 (795)
..|++++||.+..+.. .... ..++-.+ -....++.++..|..+....++.||+++..
T Consensus 809 ~~~~LVIIDsLq~i~~~~~~~~~~Gs~~q~La~Reis~ilr~Lk~lAke~~v~VI~l~Qv 868 (2050)
T 3cmu_A 809 GAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQI 868 (2050)
T ss_dssp TCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECC
T ss_pred cCCCEEEEcchhhhcccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCEEEEeccc
Confidence 6789999999988864 2110 0111111 112246777777776666677777766543
No 224
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.38 E-value=0.002 Score=68.35 Aligned_cols=35 Identities=37% Similarity=0.483 Sum_probs=28.0
Q ss_pred CceEEECCCCCchhHHHHHhhhhccccEEEeeccc
Q 003795 452 GGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQ 486 (795)
Q Consensus 452 ~giLL~GPpGtGKTtLakaLA~el~~~~~~is~se 486 (795)
.-++|.||||+||||+++.|+..++...+.++...
T Consensus 34 ~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~ 68 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDT 68 (287)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechH
Confidence 34899999999999999999998754556666543
No 225
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.38 E-value=0.0019 Score=63.56 Aligned_cols=26 Identities=38% Similarity=0.645 Sum_probs=22.8
Q ss_pred eEEECCCCCchhHHHHHhhhhccccE
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEAGVNF 479 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el~~~~ 479 (795)
+.|+||||+|||||+++|++.....+
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~~~~~~ 29 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHHCGGGE
T ss_pred EEEECCCCCCHHHHHHHHHhhCCccc
Confidence 78999999999999999999875433
No 226
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.37 E-value=0.002 Score=64.23 Aligned_cols=33 Identities=30% Similarity=0.361 Sum_probs=26.5
Q ss_pred eEEECCCCCchhHHHHHhhhhccccEEEeeccc
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQ 486 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el~~~~~~is~se 486 (795)
+.|+||+|+|||||++.|++.+++.+..++...
T Consensus 9 i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~~d~ 41 (211)
T 3asz_A 9 IGIAGGTASGKTTLAQALARTLGERVALLPMDH 41 (211)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHGGGEEEEEGGG
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCeEEEecCc
Confidence 889999999999999999998874444454433
No 227
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.37 E-value=0.0015 Score=62.83 Aligned_cols=29 Identities=24% Similarity=0.356 Sum_probs=26.4
Q ss_pred eEEECCCCCchhHHHHHhhhhccccEEEe
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEAGVNFFSI 482 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el~~~~~~i 482 (795)
|+|+|++|+||||+++.||..++.+++..
T Consensus 10 i~l~G~~GsGKSTva~~La~~lg~~~id~ 38 (168)
T 1zuh_A 10 LVLIGFMGSGKSSLAQELGLALKLEVLDT 38 (168)
T ss_dssp EEEESCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 89999999999999999999999887653
No 228
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.36 E-value=0.0013 Score=65.16 Aligned_cols=28 Identities=29% Similarity=0.387 Sum_probs=24.4
Q ss_pred eEEECCCCCchhHHHHHhhhhccccEEEe
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEAGVNFFSI 482 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el~~~~~~i 482 (795)
|+|+|+||+||||+++.|++ ++.+++..
T Consensus 4 i~i~G~~GsGKSTl~~~L~~-~g~~~i~~ 31 (204)
T 2if2_A 4 IGLTGNIGCGKSTVAQMFRE-LGAYVLDA 31 (204)
T ss_dssp EEEEECTTSSHHHHHHHHHH-TTCEEEEH
T ss_pred EEEECCCCcCHHHHHHHHHH-CCCEEEEc
Confidence 78999999999999999999 77666543
No 229
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=96.34 E-value=0.024 Score=70.74 Aligned_cols=168 Identities=13% Similarity=0.121 Sum_probs=89.3
Q ss_pred cCccCchHHHHHHHHHHHhccccccccccCcccCCceEEECCCCCchhHHHHHhhhhc---c----ccEEEeeccceehh
Q 003795 418 SDVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEA---G----VNFFSISASQFVEI 490 (795)
Q Consensus 418 ~~~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el---~----~~~~~is~se~~~~ 490 (795)
....|-++.+..+.+....-. .-++-+.|+|+.|+||||||+.++... . ...+.++.+.....
T Consensus 124 ~~~vgR~~~~~~l~~~l~~~~----------~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 193 (1249)
T 3sfz_A 124 VIFVTRKKLVHAIQQKLWKLN----------GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKS 193 (1249)
T ss_dssp SSCCCCHHHHHHHHHHHHTTT----------TSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHH
T ss_pred ceeccHHHHHHHHHHHHhhcc----------CCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCch
Confidence 345676766666665543211 011238899999999999999988752 1 12234443331110
Q ss_pred -----------hhcc-------chhhHHhHHHHHH---h--cCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHh
Q 003795 491 -----------YVGV-------GASRVRSLYQEAK---D--NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVC 547 (795)
Q Consensus 491 -----------~~g~-------~~~~l~~lf~~ar---~--~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ 547 (795)
.++. ....+..+.+..+ . ....+|+||+++... .
T Consensus 194 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~----------------~------- 250 (1249)
T 3sfz_A 194 GLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPW----------------V------- 250 (1249)
T ss_dssp HHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHH----------------H-------
T ss_pred HHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHH----------------H-------
Confidence 0000 0011122222222 2 226688888875321 1
Q ss_pred hhcccCCCcEEEEeccCCCCCCCccccCCCcccceecCCC-CCHHHHHHHHHHHHccCCCCChhhHHHHHhhCCCCcH
Q 003795 548 LDGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPK-PGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVG 624 (795)
Q Consensus 548 ld~~~~~~~VlVIatTN~~d~LdpaLlrpgRFd~~I~~~~-Pd~~eR~~Il~~~l~~~~~~~d~dl~~LA~~t~G~sg 624 (795)
++.+ ..+..||.||........ +. .....+.++. .+.++-.++|..+..............+++.+.|..-
T Consensus 251 ~~~~--~~~~~ilvTtR~~~~~~~-~~---~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~glPL 322 (1249)
T 3sfz_A 251 LKAF--DNQCQILLTTRDKSVTDS-VM---GPKHVVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSIIKECKGSPL 322 (1249)
T ss_dssp HTTT--CSSCEEEEEESSTTTTTT-CC---SCBCCEECCSSCCHHHHHHHHHHHHTSCSTTCCTHHHHHHHHTTTCHH
T ss_pred HHhh--cCCCEEEEEcCCHHHHHh-hc---CCceEEEecCCCCHHHHHHHHHHhhCCChhhCcHHHHHHHHHhCCCHH
Confidence 1112 234467777775543321 11 2234677775 8888989999877754332223346778888887643
No 230
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.33 E-value=0.00089 Score=66.31 Aligned_cols=21 Identities=24% Similarity=0.208 Sum_probs=17.4
Q ss_pred eEEECCCCCchhHHHHHhhhh
Q 003795 454 ILLCGPPGVGKTLLAKAVAGE 474 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~e 474 (795)
++++||+|+||||++-.++..
T Consensus 6 ~vi~G~~gsGKTT~ll~~~~~ 26 (184)
T 2orw_A 6 TVITGPMYSGKTTELLSFVEI 26 (184)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999998655543
No 231
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.33 E-value=0.0016 Score=62.56 Aligned_cols=29 Identities=28% Similarity=0.543 Sum_probs=25.6
Q ss_pred ceEEECCCCCchhHHHHHhhhhccccEEE
Q 003795 453 GILLCGPPGVGKTLLAKAVAGEAGVNFFS 481 (795)
Q Consensus 453 giLL~GPpGtGKTtLakaLA~el~~~~~~ 481 (795)
-|+|+|++|+||||+++.|+..++.+++.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id 32 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALGYEFVD 32 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEc
Confidence 38999999999999999999998877654
No 232
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.32 E-value=0.0054 Score=62.49 Aligned_cols=38 Identities=21% Similarity=0.356 Sum_probs=29.7
Q ss_pred CCceEEECCCCCchhHHHHHhhhhccccEEEeeccceehh
Q 003795 451 PGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEI 490 (795)
Q Consensus 451 ~~giLL~GPpGtGKTtLakaLA~el~~~~~~is~se~~~~ 490 (795)
++-|+|.||||+||+|.++.|+..++.+ .++.+++...
T Consensus 29 ~kiI~llGpPGsGKgTqa~~L~~~~g~~--hIstGdllR~ 66 (217)
T 3umf_A 29 AKVIFVLGGPGSGKGTQCEKLVQKFHFN--HLSSGDLLRA 66 (217)
T ss_dssp CEEEEEECCTTCCHHHHHHHHHHHHCCE--EECHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHCCc--eEcHHHHHHH
Confidence 3448899999999999999999988764 4566665443
No 233
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.32 E-value=0.0092 Score=60.35 Aligned_cols=31 Identities=29% Similarity=0.505 Sum_probs=23.1
Q ss_pred eEEECCCCCchhHHHHHhhhhc---cccEEEeec
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEA---GVNFFSISA 484 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el---~~~~~~is~ 484 (795)
++|+||||+|||||+..++... +...+.++.
T Consensus 26 ~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~ 59 (247)
T 2dr3_A 26 VLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVAL 59 (247)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 8999999999999988776533 344555543
No 234
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.31 E-value=0.0019 Score=62.21 Aligned_cols=26 Identities=35% Similarity=0.494 Sum_probs=22.1
Q ss_pred ceEEECCCCCchhHHHHHhhh-hcccc
Q 003795 453 GILLCGPPGVGKTLLAKAVAG-EAGVN 478 (795)
Q Consensus 453 giLL~GPpGtGKTtLakaLA~-el~~~ 478 (795)
-|+|.|+||+||||+++.|+. ..+..
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~~~~~~~ 30 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIAKNPGFY 30 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHSTTEE
T ss_pred EEEEecCCCCCHHHHHHHHHhhcCCcE
Confidence 489999999999999999998 45443
No 235
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.31 E-value=0.002 Score=63.59 Aligned_cols=24 Identities=38% Similarity=0.682 Sum_probs=21.8
Q ss_pred eEEECCCCCchhHHHHHhhhhccc
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEAGV 477 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el~~ 477 (795)
++|+||||+||||+++.|++.+.+
T Consensus 9 i~l~G~~GsGKSTl~~~L~~~~~~ 32 (207)
T 2j41_A 9 IVLSGPSGVGKGTVRKRIFEDPST 32 (207)
T ss_dssp EEEECSTTSCHHHHHHHHHHCTTC
T ss_pred EEEECCCCCCHHHHHHHHHHhhCC
Confidence 889999999999999999998733
No 236
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.30 E-value=0.0019 Score=62.90 Aligned_cols=27 Identities=37% Similarity=0.672 Sum_probs=24.0
Q ss_pred eEEECCCCCchhHHHHHhhhhccccEE
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEAGVNFF 480 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el~~~~~ 480 (795)
|+|+|+||+||||+++.|+..++.+++
T Consensus 7 I~l~G~~GsGKST~~~~La~~l~~~~i 33 (186)
T 3cm0_A 7 VIFLGPPGAGKGTQASRLAQELGFKKL 33 (186)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 899999999999999999998876543
No 237
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=96.29 E-value=0.0026 Score=72.13 Aligned_cols=95 Identities=9% Similarity=0.151 Sum_probs=69.9
Q ss_pred CCCcccccccccCcccccccCCCchhhHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH--HHH
Q 003795 205 VPNPYLGFLWRVPASMLSTFRPKKESKRAAEIRRAREELKRQRKEELEKMREESEMMEKAMDMQKKEEERRRKKE--IRL 282 (795)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~k~eld~~~~~~~~le~e~~~l~~e~~~~~~~~--~rl 282 (795)
++...+..+..++.+|+..+..++++.+++|.++++..+.. ...|..+..++.++..++.+.+.+.... +++
T Consensus 349 i~~~al~~l~~~s~~~~~~~~lp~~ai~ll~~a~~~~~~~~------~~~p~~i~~l~~~i~~l~~~~~~~~~~~d~~~~ 422 (468)
T 3pxg_A 349 ITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGSKVRLRS------FTTPPNLKELEQKLDEVRKEKDAAVQSQEFEKA 422 (468)
T ss_dssp CCHHHHHHHHHHHHHSSCCSCTTHHHHHHHHHHHHHHHHHT------TSCCSSTHHHHHHHHHHHHHHHHHHHHCCSHHH
T ss_pred CCHHHHHHHHHHHHHHhccCcCCcHHHHHHHHHHHHHHhcc------CCCchHHHHHHHHHHHHHHHHHHHHhCcCHHHH
Confidence 44455666777788899999999999999999998887643 4455566666666666666655443322 478
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 003795 283 QKYEESLQDARDNYRYMANVWEN 305 (795)
Q Consensus 283 ~~l~~el~~l~~~~~~l~~~w~~ 305 (795)
.+++.++.+++.+++++..+|++
T Consensus 423 ~~l~~~~~~~~~~~~~~~~~~~~ 445 (468)
T 3pxg_A 423 ASLRDTEQRLREQVEDTKKSWKE 445 (468)
T ss_dssp HHHHHHHHHHHHHHHHHHSGGGH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 88888888888888888888776
No 238
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.29 E-value=0.0015 Score=63.47 Aligned_cols=23 Identities=26% Similarity=0.494 Sum_probs=21.8
Q ss_pred eEEECCCCCchhHHHHHhhhhcc
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEAG 476 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el~ 476 (795)
|+|.|++|+||||+++.|+..++
T Consensus 6 I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 6 VVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 89999999999999999999876
No 239
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.28 E-value=0.002 Score=64.74 Aligned_cols=28 Identities=36% Similarity=0.494 Sum_probs=24.8
Q ss_pred ceEEECCCCCchhHHHHHhhhhccccEE
Q 003795 453 GILLCGPPGVGKTLLAKAVAGEAGVNFF 480 (795)
Q Consensus 453 giLL~GPpGtGKTtLakaLA~el~~~~~ 480 (795)
-|.|+||+|+||||+++.|++.++.+++
T Consensus 7 ~i~i~G~~GsGKSTl~~~L~~~~g~~~~ 34 (227)
T 1cke_A 7 VITIDGPSGAGKGTLCKAMAEALQWHLL 34 (227)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCcc
Confidence 3899999999999999999998886554
No 240
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.28 E-value=0.0017 Score=63.25 Aligned_cols=28 Identities=21% Similarity=0.430 Sum_probs=24.7
Q ss_pred ceEEECCCCCchhHHHHHhhhhccccEE
Q 003795 453 GILLCGPPGVGKTLLAKAVAGEAGVNFF 480 (795)
Q Consensus 453 giLL~GPpGtGKTtLakaLA~el~~~~~ 480 (795)
-|+|+|+||+||||+++.|+..++.+++
T Consensus 5 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i 32 (196)
T 1tev_A 5 VVFVLGGPGAGKGTQCARIVEKYGYTHL 32 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 3899999999999999999998886653
No 241
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.27 E-value=0.0013 Score=67.01 Aligned_cols=33 Identities=24% Similarity=0.395 Sum_probs=18.6
Q ss_pred cccCcccCCc--eEEECCCCCchhHHHHHhh-hhcc
Q 003795 444 RRRGVRIPGG--ILLCGPPGVGKTLLAKAVA-GEAG 476 (795)
Q Consensus 444 ~~~gl~i~~g--iLL~GPpGtGKTtLakaLA-~el~ 476 (795)
...++.++.| +.|+||||+|||||++.|+ +...
T Consensus 18 ~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 18 GPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp ----CCEECCCEEEEECSCC----CHHHHHHC----
T ss_pred CCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 4456666666 8899999999999999999 8754
No 242
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.26 E-value=0.0019 Score=65.82 Aligned_cols=24 Identities=25% Similarity=0.486 Sum_probs=22.1
Q ss_pred eEEECCCCCchhHHHHHhhhhccc
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEAGV 477 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el~~ 477 (795)
++|+||||+|||||+++|++...+
T Consensus 19 i~l~GpsGsGKSTLlk~L~g~~~p 42 (219)
T 1s96_A 19 YIVSAPSGAGKSSLIQALLKTQPL 42 (219)
T ss_dssp EEEECCTTSCHHHHHHHHHHHSCT
T ss_pred EEEECCCCCCHHHHHHHHhccCCC
Confidence 889999999999999999998763
No 243
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.24 E-value=0.0018 Score=64.15 Aligned_cols=30 Identities=40% Similarity=0.616 Sum_probs=26.0
Q ss_pred ceEEECCCCCchhHHHHHhhhhccccEEEe
Q 003795 453 GILLCGPPGVGKTLLAKAVAGEAGVNFFSI 482 (795)
Q Consensus 453 giLL~GPpGtGKTtLakaLA~el~~~~~~i 482 (795)
-|+|+|+||+||||+++.|+..++.+++.+
T Consensus 22 ~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 22 RVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 389999999999999999999988776443
No 244
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=96.24 E-value=0.0023 Score=67.20 Aligned_cols=32 Identities=31% Similarity=0.421 Sum_probs=26.0
Q ss_pred CceEEECCCCCchhHHHHHhhhhccccEEEeec
Q 003795 452 GGILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (795)
Q Consensus 452 ~giLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (795)
.+++|+||||||||+|+++||+.++. .+.++.
T Consensus 105 n~~~l~GppgtGKt~~a~ala~~~~l-~G~vn~ 136 (267)
T 1u0j_A 105 NTIWLFGPATTGKTNIAEAIAHTVPF-YGCVNW 136 (267)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSSC-EEECCT
T ss_pred cEEEEECCCCCCHHHHHHHHHhhhcc-cceeec
Confidence 46999999999999999999997654 455544
No 245
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.24 E-value=0.0019 Score=64.75 Aligned_cols=29 Identities=28% Similarity=0.528 Sum_probs=25.2
Q ss_pred eEEECCCCCchhHHHHHhhhhccccEEEe
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEAGVNFFSI 482 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el~~~~~~i 482 (795)
|+|+||||+||||+++.|+..++.+++..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 78999999999999999999888765543
No 246
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=96.23 E-value=0.011 Score=68.41 Aligned_cols=168 Identities=14% Similarity=0.107 Sum_probs=83.3
Q ss_pred CccCchHHHHHHHHHHHhccccccccccCcccCCceEEECCCCCchhHHHHHhhhhc-------cccEEEeeccceehh-
Q 003795 419 DVAGLGKIRLELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEA-------GVNFFSISASQFVEI- 490 (795)
Q Consensus 419 ~~~gl~~~~~~l~~lv~~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el-------~~~~~~is~se~~~~- 490 (795)
...|-+..+..+.+....-. .-.+-++|+||+|+|||+||..++... ....+.++.+.....
T Consensus 125 ~~vGR~~~l~~L~~~L~~~~----------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~~~~ 194 (591)
T 1z6t_A 125 VFVTRKKLVNAIQQKLSKLK----------GEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDKSG 194 (591)
T ss_dssp SCCCCHHHHHHHHHHHTTST----------TSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCCHHH
T ss_pred eecccHHHHHHHHHHHhccc----------CCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCchHH
Confidence 35566666655555443110 011238999999999999999997642 112333333322110
Q ss_pred ----------hhcc-------ch---hhHHhHHH-HHHh-cCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhh
Q 003795 491 ----------YVGV-------GA---SRVRSLYQ-EAKD-NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCL 548 (795)
Q Consensus 491 ----------~~g~-------~~---~~l~~lf~-~ar~-~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~l 548 (795)
..+. .. ..+...+. .... ..+.+++||+++... . +
T Consensus 195 ~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~----------------~----l--- 251 (591)
T 1z6t_A 195 LLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSW----------------V----L--- 251 (591)
T ss_dssp HHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHH----------------H----H---
T ss_pred HHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHH----------------H----H---
Confidence 0110 00 11111121 1222 257789999875321 1 1
Q ss_pred hcccCCCcEEEEeccCCCCCCCccccCCCcccceecCCCCCHHHHHHHHHHHHccCCCCChhhHHHHHhhCCCCcH
Q 003795 549 DGFEGRGNVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARKKPMADDVDYLAVASMTDGMVG 624 (795)
Q Consensus 549 d~~~~~~~VlVIatTN~~d~LdpaLlrpgRFd~~I~~~~Pd~~eR~~Il~~~l~~~~~~~d~dl~~LA~~t~G~sg 624 (795)
+.+ ..+..||.||........ . . +..-.+..+.+.+.++-.++|..++.............++..+.|..-
T Consensus 252 ~~l--~~~~~ilvTsR~~~~~~~-~-~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~i~~~~~G~PL 322 (591)
T 1z6t_A 252 KAF--DSQCQILLTTRDKSVTDS-V-M-GPKYVVPVESSLGKEKGLEILSLFVNMKKADLPEQAHSIIKECKGSPL 322 (591)
T ss_dssp HTT--CSSCEEEEEESCGGGGTT-C-C-SCEEEEECCSSCCHHHHHHHHHHHHTSCGGGSCTHHHHHHHHHTTCHH
T ss_pred HHh--cCCCeEEEECCCcHHHHh-c-C-CCceEeecCCCCCHHHHHHHHHHHhCCCcccccHHHHHHHHHhCCCcH
Confidence 112 234566667765432211 1 1 121111122467888999999887754211112346778888887643
No 247
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.20 E-value=0.0018 Score=63.47 Aligned_cols=29 Identities=28% Similarity=0.460 Sum_probs=25.5
Q ss_pred ceEEECCCCCchhHHHHHhhhhccccEEE
Q 003795 453 GILLCGPPGVGKTLLAKAVAGEAGVNFFS 481 (795)
Q Consensus 453 giLL~GPpGtGKTtLakaLA~el~~~~~~ 481 (795)
-|+|.|++|+||||+++.|+..++.+++.
T Consensus 11 ~I~l~G~~GsGKsT~~~~La~~l~~~~i~ 39 (196)
T 2c95_A 11 IIFVVGGPGSGKGTQCEKIVQKYGYTHLS 39 (196)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEc
Confidence 38999999999999999999998876544
No 248
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.20 E-value=0.0019 Score=64.58 Aligned_cols=29 Identities=31% Similarity=0.473 Sum_probs=25.1
Q ss_pred eEEECCCCCchhHHHHHhhhhccccEEEe
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEAGVNFFSI 482 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el~~~~~~i 482 (795)
|+|+||||+||||+++.|+..++.+++..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 78999999999999999999888765543
No 249
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.19 E-value=0.0025 Score=63.27 Aligned_cols=27 Identities=33% Similarity=0.461 Sum_probs=23.7
Q ss_pred eEEECCCCCchhHHHHHhhhhccccEEE
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEAGVNFFS 481 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el~~~~~~ 481 (795)
+.|+||+|+||||+++.|++ +|.+++.
T Consensus 5 i~l~G~~GsGKST~~~~La~-lg~~~id 31 (206)
T 1jjv_A 5 VGLTGGIGSGKTTIANLFTD-LGVPLVD 31 (206)
T ss_dssp EEEECSTTSCHHHHHHHHHT-TTCCEEE
T ss_pred EEEECCCCCCHHHHHHHHHH-CCCcccc
Confidence 78999999999999999998 7776653
No 250
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.19 E-value=0.0012 Score=72.40 Aligned_cols=41 Identities=27% Similarity=0.235 Sum_probs=31.5
Q ss_pred cccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeec
Q 003795 444 RRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (795)
Q Consensus 444 ~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (795)
..+++.++.| ++|+||+|+|||||+++|++...+..+.+..
T Consensus 166 ~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~i 208 (361)
T 2gza_A 166 SFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITI 208 (361)
T ss_dssp HHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEE
T ss_pred HHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEE
Confidence 4455555555 8999999999999999999988765554443
No 251
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.16 E-value=0.0022 Score=61.33 Aligned_cols=28 Identities=21% Similarity=0.377 Sum_probs=25.2
Q ss_pred eEEECCCCCchhHHHHHhhhhccccEEE
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEAGVNFFS 481 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el~~~~~~ 481 (795)
|+|+|++|+||||+++.|+..++.+++.
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~l~~~~i~ 30 (168)
T 2pt5_A 3 IYLIGFMCSGKSTVGSLLSRSLNIPFYD 30 (168)
T ss_dssp EEEESCTTSCHHHHHHHHHHHHTCCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 7899999999999999999998877654
No 252
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.15 E-value=0.00071 Score=75.77 Aligned_cols=28 Identities=39% Similarity=0.560 Sum_probs=24.0
Q ss_pred CCc-eEEECCCCCchhHHHHHhhhhcccc
Q 003795 451 PGG-ILLCGPPGVGKTLLAKAVAGEAGVN 478 (795)
Q Consensus 451 ~~g-iLL~GPpGtGKTtLakaLA~el~~~ 478 (795)
+++ ++|+||||+|||||+++|++.+.+.
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~l~~~ 194 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQELNSS 194 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHCCT
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhhcCCC
Confidence 444 7899999999999999999987553
No 253
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.15 E-value=0.0022 Score=62.42 Aligned_cols=30 Identities=23% Similarity=0.388 Sum_probs=25.6
Q ss_pred CceEEECCCCCchhHHHHHhhhhccccEEE
Q 003795 452 GGILLCGPPGVGKTLLAKAVAGEAGVNFFS 481 (795)
Q Consensus 452 ~giLL~GPpGtGKTtLakaLA~el~~~~~~ 481 (795)
.-|+|+|++|+||||+++.|+..++.+++.
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~ 36 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDFGWVHLS 36 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHCCEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeEee
Confidence 348999999999999999999988865543
No 254
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.13 E-value=0.002 Score=63.25 Aligned_cols=29 Identities=28% Similarity=0.460 Sum_probs=25.1
Q ss_pred ceEEECCCCCchhHHHHHhhhhccccEEE
Q 003795 453 GILLCGPPGVGKTLLAKAVAGEAGVNFFS 481 (795)
Q Consensus 453 giLL~GPpGtGKTtLakaLA~el~~~~~~ 481 (795)
-|+|+|++|+||||+++.|+..++.+++.
T Consensus 14 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~ 42 (199)
T 2bwj_A 14 IIFIIGGPGSGKGTQCEKLVEKYGFTHLS 42 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEc
Confidence 48999999999999999999998865543
No 255
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.12 E-value=0.0029 Score=73.63 Aligned_cols=31 Identities=39% Similarity=0.492 Sum_probs=23.7
Q ss_pred ceEEECCCCCchhHHHHHhhhhc---cccEEEee
Q 003795 453 GILLCGPPGVGKTLLAKAVAGEA---GVNFFSIS 483 (795)
Q Consensus 453 giLL~GPpGtGKTtLakaLA~el---~~~~~~is 483 (795)
.++|+|||||||||++++++..+ +..+..+.
T Consensus 206 ~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~A 239 (574)
T 3e1s_A 206 LVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCA 239 (574)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEec
Confidence 37899999999999999998754 44444443
No 256
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.12 E-value=0.0082 Score=64.34 Aligned_cols=23 Identities=30% Similarity=0.328 Sum_probs=21.1
Q ss_pred ceEEECCCCCchhHHHHHhhhhc
Q 003795 453 GILLCGPPGVGKTLLAKAVAGEA 475 (795)
Q Consensus 453 giLL~GPpGtGKTtLakaLA~el 475 (795)
-++|+||||+||||++..||+.+
T Consensus 106 vi~ivG~~GsGKTTl~~~LA~~l 128 (306)
T 1vma_A 106 VIMVVGVNGTGKTTSCGKLAKMF 128 (306)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCChHHHHHHHHHHHH
Confidence 38899999999999999999866
No 257
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.11 E-value=0.0068 Score=68.40 Aligned_cols=23 Identities=30% Similarity=0.518 Sum_probs=20.8
Q ss_pred ceEEECCCCCchhHHHHHhhhhc
Q 003795 453 GILLCGPPGVGKTLLAKAVAGEA 475 (795)
Q Consensus 453 giLL~GPpGtGKTtLakaLA~el 475 (795)
.++|.|++|||||+++..++..+
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 48999999999999999998765
No 258
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.10 E-value=0.0023 Score=61.95 Aligned_cols=28 Identities=36% Similarity=0.423 Sum_probs=21.4
Q ss_pred ceEEECCCCCchhHHHHHhhhhccccEE
Q 003795 453 GILLCGPPGVGKTLLAKAVAGEAGVNFF 480 (795)
Q Consensus 453 giLL~GPpGtGKTtLakaLA~el~~~~~ 480 (795)
-|+|+|+||+||||+++.|+..++.+++
T Consensus 7 ~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 7 IIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp EEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 3899999999999999999999888765
No 259
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.08 E-value=0.0024 Score=64.30 Aligned_cols=29 Identities=28% Similarity=0.487 Sum_probs=25.3
Q ss_pred ceEEECCCCCchhHHHHHhhhhccccEEE
Q 003795 453 GILLCGPPGVGKTLLAKAVAGEAGVNFFS 481 (795)
Q Consensus 453 giLL~GPpGtGKTtLakaLA~el~~~~~~ 481 (795)
-|+|.|+||+||||+++.|+..++.+++.
T Consensus 6 ~I~l~G~~GsGKsT~a~~La~~l~~~~i~ 34 (220)
T 1aky_A 6 RMVLIGPPGAGKGTQAPNLQERFHAAHLA 34 (220)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCceEEe
Confidence 38999999999999999999998876543
No 260
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.06 E-value=0.0029 Score=61.48 Aligned_cols=33 Identities=21% Similarity=0.310 Sum_probs=26.0
Q ss_pred ccCcccCCc-eEEECCCCCchhHHHHHhhhhccc
Q 003795 445 RRGVRIPGG-ILLCGPPGVGKTLLAKAVAGEAGV 477 (795)
Q Consensus 445 ~~gl~i~~g-iLL~GPpGtGKTtLakaLA~el~~ 477 (795)
...+.+..| .+|+||||+|||||+++|+..++.
T Consensus 19 ~~~~~~~~g~~~i~G~NGsGKStll~ai~~~l~~ 52 (182)
T 3kta_A 19 KVVIPFSKGFTAIVGANGSGKSNIGDAILFVLGG 52 (182)
T ss_dssp CEEEECCSSEEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred cEEEecCCCcEEEECCCCCCHHHHHHHHHHHHcC
Confidence 344555555 789999999999999999987653
No 261
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.05 E-value=0.0025 Score=64.52 Aligned_cols=29 Identities=21% Similarity=0.442 Sum_probs=25.5
Q ss_pred ceEEECCCCCchhHHHHHhhhhccccEEE
Q 003795 453 GILLCGPPGVGKTLLAKAVAGEAGVNFFS 481 (795)
Q Consensus 453 giLL~GPpGtGKTtLakaLA~el~~~~~~ 481 (795)
-|+|+|+||+||||+++.|+..++.+++.
T Consensus 9 ~I~l~G~~GsGKsT~a~~La~~l~~~~i~ 37 (227)
T 1zd8_A 9 RAVIMGAPGSGKGTVSSRITTHFELKHLS 37 (227)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHSSSEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEEe
Confidence 48999999999999999999998876543
No 262
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.04 E-value=0.0038 Score=60.65 Aligned_cols=31 Identities=26% Similarity=0.514 Sum_probs=27.1
Q ss_pred eEEECCCCCchhHHHHHhhhhc---cccEEEeec
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEA---GVNFFSISA 484 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el---~~~~~~is~ 484 (795)
++|+|++|+||||+++.|++.+ +.+++.++.
T Consensus 8 i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~ 41 (179)
T 2pez_A 8 VWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDG 41 (179)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECC
Confidence 7899999999999999999987 777776654
No 263
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.04 E-value=0.0027 Score=69.61 Aligned_cols=33 Identities=21% Similarity=0.175 Sum_probs=26.5
Q ss_pred ccCcccCCc--eEEECCCCCchhHHHHHhhhhccc
Q 003795 445 RRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGV 477 (795)
Q Consensus 445 ~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~ 477 (795)
.+++.+..| ++|+||||+||||+++.||+.+.+
T Consensus 149 ~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~ 183 (359)
T 2og2_A 149 ELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKN 183 (359)
T ss_dssp SCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CcceecCCCeEEEEEcCCCChHHHHHHHHHhhccc
Confidence 345555555 889999999999999999998744
No 264
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.02 E-value=0.0028 Score=62.76 Aligned_cols=28 Identities=25% Similarity=0.434 Sum_probs=24.9
Q ss_pred eEEECCCCCchhHHHHHhhhhccccEEE
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEAGVNFFS 481 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el~~~~~~ 481 (795)
|+|+|++|+||||+++.|+..++.+++.
T Consensus 18 I~l~G~~GsGKsT~~~~L~~~~g~~~i~ 45 (203)
T 1ukz_A 18 IFVLGGPGAGKGTQCEKLVKDYSFVHLS 45 (203)
T ss_dssp EEEECSTTSSHHHHHHHHHHHSSCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHcCceEEe
Confidence 8999999999999999999988875544
No 265
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.02 E-value=0.0033 Score=63.03 Aligned_cols=24 Identities=42% Similarity=0.679 Sum_probs=22.0
Q ss_pred eEEECCCCCchhHHHHHhhhhccc
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEAGV 477 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el~~ 477 (795)
++|+||||+|||||++.|++.+..
T Consensus 11 i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 11 IVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp EEEECCTTSCHHHHHHHHHHSTTC
T ss_pred EEEECcCCCCHHHHHHHHHhhCCC
Confidence 889999999999999999998754
No 266
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.00 E-value=0.013 Score=58.71 Aligned_cols=113 Identities=20% Similarity=0.197 Sum_probs=62.5
Q ss_pred eEEECCCCCchhHHHHHhhhhc---cccEEEeeccc---------eehhh-----------h--cc----chhhHHhHHH
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQ---------FVEIY-----------V--GV----GASRVRSLYQ 504 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el---~~~~~~is~se---------~~~~~-----------~--g~----~~~~l~~lf~ 504 (795)
|++++++|.||||+|-.+|-.. |..+..+..-. +.... . .+ ........++
T Consensus 31 i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~l~ 110 (196)
T 1g5t_A 31 IIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAVWQ 110 (196)
T ss_dssp EEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHHHH
Confidence 8899999999999998887643 45554442211 11111 0 00 0122234444
Q ss_pred HHHh----cCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcccCCCcEEEEeccCCCCCCCccccCCCccc
Q 003795 505 EAKD----NAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFD 580 (795)
Q Consensus 505 ~ar~----~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVIatTN~~d~LdpaLlrpgRFd 580 (795)
.++. ..+++|++||+-....-... ....++..+. ....+.-||.|+|.+ +++|+. .-|
T Consensus 111 ~a~~~l~~~~yDlvILDEi~~al~~g~l-----------~~~ev~~~l~--~Rp~~~~vIlTGr~a---p~~l~e--~AD 172 (196)
T 1g5t_A 111 HGKRMLADPLLDMVVLDELTYMVAYDYL-----------PLEEVISALN--ARPGHQTVIITGRGC---HRDILD--LAD 172 (196)
T ss_dssp HHHHHTTCTTCSEEEEETHHHHHHTTSS-----------CHHHHHHHHH--TSCTTCEEEEECSSC---CHHHHH--HCS
T ss_pred HHHHHHhcCCCCEEEEeCCCccccCCCC-----------CHHHHHHHHH--hCcCCCEEEEECCCC---cHHHHH--hCc
Confidence 4443 45789999999765432211 2344555555 344566778888764 445544 444
Q ss_pred ceec
Q 003795 581 RKIF 584 (795)
Q Consensus 581 ~~I~ 584 (795)
.+-+
T Consensus 173 ~VTe 176 (196)
T 1g5t_A 173 TVSE 176 (196)
T ss_dssp EEEE
T ss_pred ceee
Confidence 4433
No 267
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.00 E-value=0.0032 Score=64.67 Aligned_cols=27 Identities=30% Similarity=0.582 Sum_probs=23.1
Q ss_pred CceEEECCCCCchhHHHHHhhhhcccc
Q 003795 452 GGILLCGPPGVGKTLLAKAVAGEAGVN 478 (795)
Q Consensus 452 ~giLL~GPpGtGKTtLakaLA~el~~~ 478 (795)
.-++|+||||+||||+++.|+..++..
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La~~lg~~ 54 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIAQNFGLQ 54 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCCC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 348999999999999999999766543
No 268
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.98 E-value=0.0033 Score=61.73 Aligned_cols=27 Identities=26% Similarity=0.586 Sum_probs=24.4
Q ss_pred eEEECCCCCchhHHHHHhhhhccccEE
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEAGVNFF 480 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el~~~~~ 480 (795)
|+|.|++|+||||+++.|+..++..++
T Consensus 3 I~i~G~~GsGKsT~~~~L~~~l~~~~~ 29 (205)
T 2jaq_A 3 IAIFGTVGAGKSTISAEISKKLGYEIF 29 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHCCEEE
T ss_pred EEEECCCccCHHHHHHHHHHhcCCcEE
Confidence 789999999999999999999887554
No 269
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=95.97 E-value=0.0019 Score=69.08 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=21.7
Q ss_pred eEEECCCCCchhHHHHHhhhhcc
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEAG 476 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el~ 476 (795)
+.|+||+|+|||||++.|++.++
T Consensus 83 igI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 83 ISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHh
Confidence 88999999999999999999876
No 270
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.97 E-value=0.0029 Score=63.09 Aligned_cols=23 Identities=39% Similarity=0.690 Sum_probs=21.3
Q ss_pred eEEECCCCCchhHHHHHhhhhcc
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEAG 476 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el~ 476 (795)
+.|+||||+|||||++.|++...
T Consensus 7 i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 7 VVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHhhCc
Confidence 89999999999999999999764
No 271
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.95 E-value=0.013 Score=59.38 Aligned_cols=32 Identities=28% Similarity=0.323 Sum_probs=23.6
Q ss_pred eEEECCCCCchhHHHHHhhhh----ccccEEEeecc
Q 003795 454 ILLCGPPGVGKTLLAKAVAGE----AGVNFFSISAS 485 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~e----l~~~~~~is~s 485 (795)
++|.|+||+|||+|+-.+|.. .+.+.+.++..
T Consensus 33 ~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E 68 (251)
T 2zts_A 33 VLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE 68 (251)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeeccc
Confidence 899999999999999876542 24455555543
No 272
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=95.93 E-value=0.008 Score=74.39 Aligned_cols=33 Identities=21% Similarity=0.239 Sum_probs=25.3
Q ss_pred ccccccCcccCC-------c--eEEECCCCCchhHHHHHhhhh
Q 003795 441 EMYRRRGVRIPG-------G--ILLCGPPGVGKTLLAKAVAGE 474 (795)
Q Consensus 441 ~~~~~~gl~i~~-------g--iLL~GPpGtGKTtLakaLA~e 474 (795)
....++.+.++. | ++|+||||+|||||+|.+ +.
T Consensus 770 ~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl 811 (1022)
T 2o8b_B 770 FIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GL 811 (1022)
T ss_dssp CCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HH
T ss_pred eEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HH
Confidence 345566665543 3 889999999999999999 53
No 273
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=95.92 E-value=0.0031 Score=71.38 Aligned_cols=46 Identities=15% Similarity=0.160 Sum_probs=36.3
Q ss_pred HHHHHHHHHHhccccccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccc
Q 003795 426 IRLELEEIVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGV 477 (795)
Q Consensus 426 ~~~~l~~lv~~~~~~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~ 477 (795)
..+.++++...|. ++++.+..| ++|+||||+|||||+|+|++...+
T Consensus 117 ~mi~~~nl~~~y~------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p 164 (460)
T 2npi_A 117 TMKYIYNLHFMLE------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALK 164 (460)
T ss_dssp THHHHHHHHHHHH------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHH
T ss_pred chhhhhhhhehhh------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccc
Confidence 3567788877774 355666666 999999999999999999997643
No 274
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.92 E-value=0.0045 Score=60.29 Aligned_cols=30 Identities=30% Similarity=0.190 Sum_probs=26.1
Q ss_pred eEEECCCCCchhHHHHHhhhhc---cccEEEee
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEA---GVNFFSIS 483 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el---~~~~~~is 483 (795)
|+|+|++|+||||+++.|+..+ +.+++..+
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 7899999999999999999987 77776654
No 275
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.90 E-value=0.004 Score=62.87 Aligned_cols=34 Identities=38% Similarity=0.651 Sum_probs=27.8
Q ss_pred eEEECCCCCchhHHHHHhhhhccccEEEeeccceeh
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVE 489 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el~~~~~~is~se~~~ 489 (795)
|+|.||||+||+|.++.|+...+.+. ++.+++..
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~g~~~--istGdllR 36 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEKGFVH--ISTGDILR 36 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCEE--EEHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeE--EcHHHHHH
Confidence 68999999999999999999987654 55565543
No 276
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.88 E-value=0.0033 Score=61.56 Aligned_cols=23 Identities=35% Similarity=0.667 Sum_probs=20.6
Q ss_pred eEEECCCCCchhHHHHHhhhhcc
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEAG 476 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el~ 476 (795)
++|+||||+||||+++.|++..+
T Consensus 5 i~l~G~~GaGKSTl~~~L~~~~~ 27 (189)
T 2bdt_A 5 YIITGPAGVGKSTTCKRLAAQLD 27 (189)
T ss_dssp EEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEECCCCCcHHHHHHHHhcccC
Confidence 78999999999999999998543
No 277
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.88 E-value=0.0034 Score=61.34 Aligned_cols=23 Identities=22% Similarity=0.473 Sum_probs=21.3
Q ss_pred eEEECCCCCchhHHHHHhhhhcc
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEAG 476 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el~ 476 (795)
++|+||+|+|||||++.|++...
T Consensus 8 i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 8 LVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHhhCC
Confidence 88999999999999999999764
No 278
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.87 E-value=0.003 Score=63.61 Aligned_cols=29 Identities=31% Similarity=0.557 Sum_probs=25.5
Q ss_pred eEEECCCCCchhHHHHHhhhhccccEEEe
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEAGVNFFSI 482 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el~~~~~~i 482 (795)
|+|.|+||+||||+++.|+..++.+++.+
T Consensus 8 I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 8 LILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 89999999999999999999988766543
No 279
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.87 E-value=0.0034 Score=63.97 Aligned_cols=29 Identities=34% Similarity=0.489 Sum_probs=25.5
Q ss_pred ceEEECCCCCchhHHHHHhhhhccccEEE
Q 003795 453 GILLCGPPGVGKTLLAKAVAGEAGVNFFS 481 (795)
Q Consensus 453 giLL~GPpGtGKTtLakaLA~el~~~~~~ 481 (795)
.|+|.|++|+||||+++.|+..++.+++.
T Consensus 18 ~I~l~G~~GsGKsT~a~~La~~l~~~~i~ 46 (233)
T 1ak2_A 18 RAVLLGPPGAGKGTQAPKLAKNFCVCHLA 46 (233)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceec
Confidence 38999999999999999999998866544
No 280
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.86 E-value=0.0032 Score=61.20 Aligned_cols=23 Identities=30% Similarity=0.427 Sum_probs=21.5
Q ss_pred eEEECCCCCchhHHHHHhhhhcc
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEAG 476 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el~ 476 (795)
|+|.|+||+||||+++.|+..++
T Consensus 4 I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 4 GIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999999775
No 281
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=95.82 E-value=0.0014 Score=71.23 Aligned_cols=32 Identities=22% Similarity=0.237 Sum_probs=25.4
Q ss_pred cccCcccCCc--eEEECCCCCchhHHHHHhhhhc
Q 003795 444 RRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEA 475 (795)
Q Consensus 444 ~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el 475 (795)
.++++.+..| +.|+||||+|||||+++|++.+
T Consensus 46 ~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 46 DAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp HHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 3344555555 8899999999999999999865
No 282
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=95.82 E-value=0.0036 Score=68.32 Aligned_cols=40 Identities=20% Similarity=0.267 Sum_probs=31.7
Q ss_pred ccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEee
Q 003795 443 YRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 483 (795)
Q Consensus 443 ~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is 483 (795)
...+ +.+.+| +.|.||||+|||||++.|++...+..+.+.
T Consensus 62 ld~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~ 103 (347)
T 2obl_A 62 IDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLA 103 (347)
T ss_dssp HHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEE
T ss_pred EEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEE
Confidence 3444 566666 899999999999999999999877665543
No 283
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.82 E-value=0.0059 Score=65.40 Aligned_cols=107 Identities=21% Similarity=0.257 Sum_probs=58.3
Q ss_pred eEEECCCCCchhHHHHHhhhhc---------------c----ccEEEeecccee--hh------hhccc-----------
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEA---------------G----VNFFSISASQFV--EI------YVGVG----------- 495 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el---------------~----~~~~~is~se~~--~~------~~g~~----------- 495 (795)
++|+||||+|||+|+..+|... + ...++++...-. .. ..|..
T Consensus 101 ~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~ 180 (322)
T 2i1q_A 101 TEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQTVLDNTFVA 180 (322)
T ss_dssp EEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHHTCCHHHHHHTEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHcCCCHHHHhcCEEEE
Confidence 8999999999999999988642 2 456667665421 10 01110
Q ss_pred ----hh----hHHhHHHHHHh-cCCceeEhHHHHHHhhhccCCCCCCcc-hHHHHHHHHHHhhhcccCCCcEEEEec
Q 003795 496 ----AS----RVRSLYQEAKD-NAPSVVFIDELDAVGRERGLIKGSGGQ-ERDATLNQLLVCLDGFEGRGNVITIAS 562 (795)
Q Consensus 496 ----~~----~l~~lf~~ar~-~~p~Il~IDEID~l~~~r~~~~~Sgge-~~r~~l~~LL~~ld~~~~~~~VlVIat 562 (795)
.. .+..+...++. ..+.+++||.+..+..... .+.+.. .....+..++..+..+....++.||.+
T Consensus 181 ~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~--~~~~~~~~r~~~~~~~~~~L~~la~~~~~~vi~~ 255 (322)
T 2i1q_A 181 RAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFRNEY--TGRGKLAERQQKLGRHMATLNKLADLFNCVVLVT 255 (322)
T ss_dssp ECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHHHHHHC--CCTTSHHHHHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred eCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHHHHHHHh--cCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEE
Confidence 01 11223334444 5678999999988764311 111111 112245555555554444445555554
No 284
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.81 E-value=0.0025 Score=64.24 Aligned_cols=32 Identities=22% Similarity=0.406 Sum_probs=26.3
Q ss_pred ceEEECCCCCchhHHHHHhhhhccccEEEeeccc
Q 003795 453 GILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQ 486 (795)
Q Consensus 453 giLL~GPpGtGKTtLakaLA~el~~~~~~is~se 486 (795)
-|+|.||||+||||+++.|+..++..+ ++.++
T Consensus 7 ~I~l~G~~GsGKsT~~~~La~~l~~~~--i~~d~ 38 (222)
T 1zak_A 7 KVMISGAPASGKGTQCELIKTKYQLAH--ISAGD 38 (222)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHHCCEE--CCHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCce--ecHHH
Confidence 489999999999999999999988644 44443
No 285
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=95.81 E-value=0.0035 Score=63.35 Aligned_cols=24 Identities=42% Similarity=0.571 Sum_probs=21.6
Q ss_pred eEEECCCCCchhHHHHHhhhhcccc
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEAGVN 478 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el~~~ 478 (795)
+.|+||||+|||||+++|++. .+.
T Consensus 25 ~~liG~nGsGKSTLl~~l~Gl-~p~ 48 (208)
T 3b85_A 25 VFGLGPAGSGKTYLAMAKAVQ-ALQ 48 (208)
T ss_dssp EEEECCTTSSTTHHHHHHHHH-HHH
T ss_pred EEEECCCCCCHHHHHHHHhcC-CCc
Confidence 789999999999999999997 544
No 286
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.81 E-value=0.0033 Score=63.02 Aligned_cols=29 Identities=31% Similarity=0.431 Sum_probs=25.2
Q ss_pred eEEECCCCCchhHHHHHhhhhccccEEEe
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEAGVNFFSI 482 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el~~~~~~i 482 (795)
|+|.|+||+||||+++.|+..++.+++.+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 78999999999999999999888765443
No 287
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.80 E-value=0.006 Score=60.12 Aligned_cols=30 Identities=17% Similarity=0.155 Sum_probs=26.0
Q ss_pred eEEECCCCCchhHHHHHhhhhc-cccEEEee
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEA-GVNFFSIS 483 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el-~~~~~~is 483 (795)
|+|.|++|+||||+++.|+..+ +.+++.++
T Consensus 7 I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~ 37 (204)
T 2v54_A 7 IVFEGLDKSGKTTQCMNIMESIPANTIKYLN 37 (204)
T ss_dssp EEEECCTTSSHHHHHHHHHHTSCGGGEEEEE
T ss_pred EEEEcCCCCCHHHHHHHHHHHHCCCceEEEe
Confidence 8999999999999999999988 56666554
No 288
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.78 E-value=0.005 Score=63.79 Aligned_cols=27 Identities=37% Similarity=0.551 Sum_probs=24.2
Q ss_pred eEEECCCCCchhHHHHHhhhhccccEE
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEAGVNFF 480 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el~~~~~ 480 (795)
|.|.||+|+||||+++.|+..++..+.
T Consensus 30 I~I~G~~GsGKSTl~k~La~~Lg~~~~ 56 (252)
T 4e22_A 30 ITVDGPSGAGKGTLCKALAESLNWRLL 56 (252)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCcC
Confidence 899999999999999999988876554
No 289
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.77 E-value=0.016 Score=61.67 Aligned_cols=33 Identities=27% Similarity=0.302 Sum_probs=25.4
Q ss_pred ceEEECCCCCchhHHHHHhhhhc----cccEEEeecc
Q 003795 453 GILLCGPPGVGKTLLAKAVAGEA----GVNFFSISAS 485 (795)
Q Consensus 453 giLL~GPpGtGKTtLakaLA~el----~~~~~~is~s 485 (795)
-++|+||||+||||++..||+.+ |..+..++..
T Consensus 107 vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D 143 (296)
T 2px0_A 107 YIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTD 143 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 38899999999999999999865 3345555443
No 290
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.75 E-value=0.022 Score=65.31 Aligned_cols=108 Identities=18% Similarity=0.154 Sum_probs=58.6
Q ss_pred ccCCc--eEEECCCCCchhHHHHHhhhhcc---ccEEEeeccceehh------hhc----------------------cc
Q 003795 449 RIPGG--ILLCGPPGVGKTLLAKAVAGEAG---VNFFSISASQFVEI------YVG----------------------VG 495 (795)
Q Consensus 449 ~i~~g--iLL~GPpGtGKTtLakaLA~el~---~~~~~is~se~~~~------~~g----------------------~~ 495 (795)
.++.| ++|.||||+|||||++.+++... ...+.+...+-... .+| ..
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~~l~~~~~~~g~~~~~~~~~g~~~~~~~~p~~LS~ 356 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGL 356 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSCCHHHHHHTTSEEECCCCGGGSCH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCCHHHHHhCCCEEEEEeccccCCH
Confidence 44545 88999999999999999998652 23344443221100 000 00
Q ss_pred hhhHHhHHHHHHhcCCceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcccCCCcEEEEeccCCC
Q 003795 496 ASRVRSLYQEAKDNAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRP 566 (795)
Q Consensus 496 ~~~l~~lf~~ar~~~p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVIatTN~~ 566 (795)
....+.++..+....|.++++|=+..+... ..+...+..+..++..+. . .++.+|.+++..
T Consensus 357 g~~q~~~~a~~l~~~p~llilDp~~~Ld~~------~~~~~~~~~i~~ll~~l~---~-~g~tvilvsh~~ 417 (525)
T 1tf7_A 357 EDHLQIIKSEINDFKPARIAIDSLSALARG------VSNNAFRQFVIGVTGYAK---Q-EEITGLFTNTSD 417 (525)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEECHHHHTSS------SCHHHHHHHHHHHHHHHH---H-TTCEEEEEEECS
T ss_pred HHHHHHHHHHHHhhCCCEEEEcChHHHHhh------CChHHHHHHHHHHHHHHH---h-CCCEEEEEECcc
Confidence 112244555566678999999955444221 112224455555665554 2 234445444443
No 291
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.75 E-value=0.0041 Score=64.09 Aligned_cols=30 Identities=23% Similarity=0.354 Sum_probs=25.4
Q ss_pred CceEEECCCCCchhHHHHHhhhhccccEEE
Q 003795 452 GGILLCGPPGVGKTLLAKAVAGEAGVNFFS 481 (795)
Q Consensus 452 ~giLL~GPpGtGKTtLakaLA~el~~~~~~ 481 (795)
.-|+|+||||+||||+++.|+..++.+.+.
T Consensus 30 ~~I~l~G~~GsGKsT~a~~L~~~~g~~~is 59 (243)
T 3tlx_A 30 GRYIFLGAPGSGKGTQSLNLKKSHCYCHLS 59 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence 348999999999999999999988765543
No 292
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=95.73 E-value=0.0034 Score=66.02 Aligned_cols=30 Identities=23% Similarity=0.282 Sum_probs=21.8
Q ss_pred eEEECCCCCchhHHHHHhhhhccccEEEee
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 483 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el~~~~~~is 483 (795)
++|+||||+|||||+++|++...+..+.+.
T Consensus 5 v~lvG~nGaGKSTLln~L~g~~~~~~G~i~ 34 (270)
T 3sop_A 5 IMVVGQSGLGKSTLVNTLFKSQVSRKASSW 34 (270)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHC-------
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCCCCccc
Confidence 689999999999999999998766655543
No 293
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.73 E-value=0.0053 Score=66.25 Aligned_cols=32 Identities=38% Similarity=0.547 Sum_probs=28.3
Q ss_pred ceEEECCCCCchhHHHHHhhhhccccEEEeec
Q 003795 453 GILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (795)
Q Consensus 453 giLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (795)
.++|+||+|+|||||++.||..++..++.++.
T Consensus 7 ~i~i~GptGsGKTtla~~La~~l~~~iis~Ds 38 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALADALPCELISVDS 38 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHSCEEEEEECT
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEeccc
Confidence 48999999999999999999999877776654
No 294
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=95.73 E-value=0.0033 Score=76.98 Aligned_cols=45 Identities=20% Similarity=0.219 Sum_probs=39.2
Q ss_pred ccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeecc
Q 003795 441 EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 485 (795)
Q Consensus 441 ~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~s 485 (795)
..+.++++.+..| +.|+||||+|||||+++|+|...+..|.+...
T Consensus 687 ~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~ 733 (986)
T 2iw3_A 687 PQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTH 733 (986)
T ss_dssp CSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEEC
T ss_pred eeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEc
Confidence 4577888888887 89999999999999999999998888877654
No 295
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.73 E-value=0.0052 Score=61.11 Aligned_cols=27 Identities=30% Similarity=0.362 Sum_probs=23.2
Q ss_pred eEEECCCCCchhHHHHHhhhhc-cccEE
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEA-GVNFF 480 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el-~~~~~ 480 (795)
++|+|++|+||||+++.|++.+ +..++
T Consensus 24 i~i~G~~GsGKSTl~~~L~~~~~~~~~i 51 (207)
T 2qt1_A 24 IGISGVTNSGKTTLAKNLQKHLPNCSVI 51 (207)
T ss_dssp EEEEESTTSSHHHHHHHHHTTSTTEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCcEEE
Confidence 8899999999999999999987 44443
No 296
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=95.73 E-value=0.0031 Score=62.28 Aligned_cols=45 Identities=13% Similarity=0.247 Sum_probs=27.7
Q ss_pred HHHHHHHHhccccccccccCcccCCc--eEEECCCCCchhHHHHHhhhhc
Q 003795 428 LELEEIVKFFTHGEMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEA 475 (795)
Q Consensus 428 ~~l~~lv~~~~~~~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el 475 (795)
++++++...|.. ..+.+ +.++.| ++|+|+||+|||||+++|++..
T Consensus 4 l~~~~~~~~~~~-~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 4 LNYQQTHFVMSA-PDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp -------CEEEE-SSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred hhhhhhhheeec-CCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 345566665643 23333 555555 8999999999999999999864
No 297
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.72 E-value=0.006 Score=59.66 Aligned_cols=29 Identities=24% Similarity=0.236 Sum_probs=24.8
Q ss_pred eEEECCCCCchhHHHHHhhhhc---cccEEEe
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEA---GVNFFSI 482 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el---~~~~~~i 482 (795)
|.|.|++|+||||+++.|+..+ +.+++..
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~ 34 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK 34 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEe
Confidence 6899999999999999999988 7777654
No 298
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=95.72 E-value=0.0048 Score=69.46 Aligned_cols=40 Identities=20% Similarity=0.297 Sum_probs=32.4
Q ss_pred cccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEEEeec
Q 003795 444 RRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (795)
Q Consensus 444 ~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (795)
..+ +.+.+| ++|.||||+|||||++.|++...+..+.+..
T Consensus 149 d~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~ 190 (438)
T 2dpy_A 149 NAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGL 190 (438)
T ss_dssp HHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEE
T ss_pred eee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEE
Confidence 444 566666 8899999999999999999998877666544
No 299
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.71 E-value=0.0049 Score=64.12 Aligned_cols=33 Identities=30% Similarity=0.579 Sum_probs=27.0
Q ss_pred eEEECCCCCchhHHHHHhhhh---ccccEEEeeccc
Q 003795 454 ILLCGPPGVGKTLLAKAVAGE---AGVNFFSISASQ 486 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~e---l~~~~~~is~se 486 (795)
|+|+|+||+||||+++.|+.. .+.+++.++...
T Consensus 7 Ivl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~ 42 (260)
T 3a4m_A 7 IILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDL 42 (260)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchH
Confidence 899999999999999999987 566666555443
No 300
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.68 E-value=0.006 Score=69.45 Aligned_cols=34 Identities=29% Similarity=0.273 Sum_probs=27.8
Q ss_pred cccCcccCCc--eEEECCCCCchhHHHHHhhhhccc
Q 003795 444 RRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGV 477 (795)
Q Consensus 444 ~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~ 477 (795)
..+++.+..| ++|+||||+|||||++.|++.+..
T Consensus 284 ~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~ 319 (503)
T 2yhs_A 284 EPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQ 319 (503)
T ss_dssp CCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhh
Confidence 4556666655 889999999999999999997744
No 301
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.66 E-value=0.0057 Score=61.97 Aligned_cols=27 Identities=30% Similarity=0.491 Sum_probs=23.9
Q ss_pred eEEECCCCCchhHHHHHhhhhccccEE
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEAGVNFF 480 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el~~~~~ 480 (795)
|+|.|+||+||||+++.|+..++.+++
T Consensus 3 I~l~G~~GsGKsT~a~~La~~lg~~~i 29 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQGNLVKDKYSLAHI 29 (223)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 789999999999999999998876543
No 302
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=95.64 E-value=0.019 Score=66.40 Aligned_cols=74 Identities=19% Similarity=0.280 Sum_probs=50.0
Q ss_pred ceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcccCCCcEEEEeccCCCC--CCCccccCCCcccceecCCCCC
Q 003795 512 SVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPD--ILDPALVRPGRFDRKIFIPKPG 589 (795)
Q Consensus 512 ~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVIatTN~~d--~LdpaLlrpgRFd~~I~~~~Pd 589 (795)
-+++|||+..+.... +.. +...+..+-..-...+|-+|.+|.+|. .++..++. -|...|-+...+
T Consensus 345 ivvVIDE~~~L~~~~-------~~~----~~~~L~~Iar~GRa~GIhLIlaTQRPs~d~I~~~Ira--n~~~RI~lrv~s 411 (574)
T 2iut_A 345 IVVVVDEFADMMMIV-------GKK----VEELIARIAQKARAAGIHLILATQRPSVDVITGLIKA--NIPTRIAFQVSS 411 (574)
T ss_dssp EEEEESCCTTHHHHT-------CHH----HHHHHHHHHHHCTTTTEEEEEEESCCCTTTSCHHHHH--TCCEEEEECCSC
T ss_pred EEEEEeCHHHHhhhh-------hHH----HHHHHHHHHHHHhhCCeEEEEEecCcccccccHHHHh--hhccEEEEEcCC
Confidence 479999998775431 111 222333333233456788998898887 78887776 688888888888
Q ss_pred HHHHHHHHH
Q 003795 590 LIGRMEILK 598 (795)
Q Consensus 590 ~~eR~~Il~ 598 (795)
..+-..|+.
T Consensus 412 ~~Dsr~ILd 420 (574)
T 2iut_A 412 KIDSRTILD 420 (574)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHhcC
Confidence 888777764
No 303
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.62 E-value=0.0059 Score=70.53 Aligned_cols=37 Identities=30% Similarity=0.434 Sum_probs=29.5
Q ss_pred ccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEE
Q 003795 443 YRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFF 480 (795)
Q Consensus 443 ~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~ 480 (795)
+.+++ .+..| +.|+||||+|||||+++|+|.+.+..+
T Consensus 38 l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G 76 (538)
T 1yqt_A 38 LYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLC 76 (538)
T ss_dssp EECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTT
T ss_pred ccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC
Confidence 45566 66666 889999999999999999998755433
No 304
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.59 E-value=0.0064 Score=60.02 Aligned_cols=29 Identities=34% Similarity=0.575 Sum_probs=25.8
Q ss_pred ceEEECCCCCchhHHHHHhhhhccccEEE
Q 003795 453 GILLCGPPGVGKTLLAKAVAGEAGVNFFS 481 (795)
Q Consensus 453 giLL~GPpGtGKTtLakaLA~el~~~~~~ 481 (795)
-|.|.|++|+||||+++.|++.++.+++.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d 32 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLS 32 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceec
Confidence 37899999999999999999999877654
No 305
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=95.57 E-value=0.005 Score=61.25 Aligned_cols=22 Identities=45% Similarity=0.789 Sum_probs=20.7
Q ss_pred eEEECCCCCchhHHHHHhhhhc
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEA 475 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el 475 (795)
++|+||||+|||||++.|++.+
T Consensus 4 i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 4 VFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp EEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEECCCCChHHHHHHHHHhhc
Confidence 7899999999999999999976
No 306
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.47 E-value=0.02 Score=64.36 Aligned_cols=69 Identities=17% Similarity=0.205 Sum_probs=42.9
Q ss_pred CCceEEECCCCCchhHHHHHhhhhc---cccEEEeeccceehh----------------h---hccch-hhHHhHHHHHH
Q 003795 451 PGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQFVEI----------------Y---VGVGA-SRVRSLYQEAK 507 (795)
Q Consensus 451 ~~giLL~GPpGtGKTtLakaLA~el---~~~~~~is~se~~~~----------------~---~g~~~-~~l~~lf~~ar 507 (795)
|.-++++|++|+||||++..||..+ +..+.-+++..+... + .+... ..+...++.+.
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a~ 179 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYFK 179 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHHH
Confidence 3448999999999999999998754 445555554432110 1 11111 12245566666
Q ss_pred hcCCceeEhHHH
Q 003795 508 DNAPSVVFIDEL 519 (795)
Q Consensus 508 ~~~p~Il~IDEI 519 (795)
...+++++||..
T Consensus 180 ~~~~DvVIIDTa 191 (443)
T 3dm5_A 180 SKGVDIIIVDTA 191 (443)
T ss_dssp HTTCSEEEEECC
T ss_pred hCCCCEEEEECC
Confidence 667889999864
No 307
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=95.47 E-value=0.026 Score=64.53 Aligned_cols=73 Identities=19% Similarity=0.311 Sum_probs=48.1
Q ss_pred eeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcccCCCcEEEEeccCCCC--CCCccccCCCcccceecCCCCCH
Q 003795 513 VVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPD--ILDPALVRPGRFDRKIFIPKPGL 590 (795)
Q Consensus 513 Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVIatTN~~d--~LdpaLlrpgRFd~~I~~~~Pd~ 590 (795)
+++|||+..+.... +. .+..++..+-......++-+|.+|.+++ .++..++. .|...|-|...+.
T Consensus 300 vlvIDE~~~ll~~~-------~~----~~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~--n~~~RI~lrv~s~ 366 (512)
T 2ius_A 300 VVLVDEFADLMMTV-------GK----KVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKA--NIPTRIAFTVSSK 366 (512)
T ss_dssp EEEEETHHHHHHHH-------HH----HHHHHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHH--HCCEEEEECCSSH
T ss_pred EEEEeCHHHHHhhh-------hH----HHHHHHHHHHHHhhhCCcEEEEEecCCccccccHHHHh--hcCCeEEEEcCCH
Confidence 79999998775421 01 2233333332223344788888888876 57777766 6788888888888
Q ss_pred HHHHHHHH
Q 003795 591 IGRMEILK 598 (795)
Q Consensus 591 ~eR~~Il~ 598 (795)
.+...|+.
T Consensus 367 ~dsr~ilg 374 (512)
T 2ius_A 367 IDSRTILD 374 (512)
T ss_dssp HHHHHHHS
T ss_pred HHHHHhcC
Confidence 88887775
No 308
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.45 E-value=0.014 Score=65.52 Aligned_cols=32 Identities=34% Similarity=0.282 Sum_probs=24.5
Q ss_pred ceEEECCCCCchhHHHHHhhhhc---cccEEEeec
Q 003795 453 GILLCGPPGVGKTLLAKAVAGEA---GVNFFSISA 484 (795)
Q Consensus 453 giLL~GPpGtGKTtLakaLA~el---~~~~~~is~ 484 (795)
-++++||+|+||||++..||..+ +..+..+++
T Consensus 99 vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~ 133 (433)
T 3kl4_A 99 IIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAA 133 (433)
T ss_dssp EEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEec
Confidence 38899999999999999999755 444444443
No 309
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.41 E-value=0.0063 Score=65.37 Aligned_cols=24 Identities=25% Similarity=0.300 Sum_probs=22.0
Q ss_pred eEEECCCCCchhHHHHHhhhhccc
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEAGV 477 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el~~ 477 (795)
+.|.||||+|||||++.|++.+.+
T Consensus 93 vgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 93 IGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHT
T ss_pred EEEECCCCchHHHHHHHHHhhccc
Confidence 889999999999999999997754
No 310
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.40 E-value=0.0079 Score=61.94 Aligned_cols=28 Identities=25% Similarity=0.592 Sum_probs=24.8
Q ss_pred ceEEECCCCCchhHHHHHhhhhccccEE
Q 003795 453 GILLCGPPGVGKTLLAKAVAGEAGVNFF 480 (795)
Q Consensus 453 giLL~GPpGtGKTtLakaLA~el~~~~~ 480 (795)
-+.|.||+|+||||+++.|+..++.+++
T Consensus 11 ~i~i~G~~GsGKsTla~~la~~lg~~~~ 38 (233)
T 3r20_A 11 VVAVDGPAGTGKSSVSRGLARALGARYL 38 (233)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCcc
Confidence 4899999999999999999999886553
No 311
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.36 E-value=0.0067 Score=59.93 Aligned_cols=24 Identities=25% Similarity=0.238 Sum_probs=22.3
Q ss_pred eEEECCCCCchhHHHHHhhhhccc
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEAGV 477 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el~~ 477 (795)
|+|.|+||+||||+++.|+..++.
T Consensus 7 I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 7 IAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHTT
T ss_pred EEEEcCCCCCHHHHHHHHHHHHhh
Confidence 889999999999999999998765
No 312
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.32 E-value=0.0068 Score=59.54 Aligned_cols=27 Identities=26% Similarity=0.343 Sum_probs=23.8
Q ss_pred eEEECCCCCchhHHHHHhhhhccccEEE
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEAGVNFFS 481 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el~~~~~~ 481 (795)
|.|+|++|+||||+++.|+.. +.+++.
T Consensus 11 I~i~G~~GsGKST~~~~La~~-g~~~id 37 (203)
T 1uf9_A 11 IGITGNIGSGKSTVAALLRSW-GYPVLD 37 (203)
T ss_dssp EEEEECTTSCHHHHHHHHHHT-TCCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHC-CCEEEc
Confidence 899999999999999999998 766543
No 313
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.32 E-value=0.0072 Score=60.25 Aligned_cols=28 Identities=21% Similarity=0.399 Sum_probs=25.0
Q ss_pred eEEECCCCCchhHHHHHhhhhccccEEE
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEAGVNFFS 481 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el~~~~~~ 481 (795)
|.|+|++|+||||+++.|+..+|.+++.
T Consensus 15 IgltG~~GSGKSTva~~L~~~lg~~vid 42 (192)
T 2grj_A 15 IGVTGKIGTGKSTVCEILKNKYGAHVVN 42 (192)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCEEEE
Confidence 7899999999999999999988876654
No 314
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.29 E-value=0.0077 Score=60.36 Aligned_cols=28 Identities=36% Similarity=0.510 Sum_probs=24.0
Q ss_pred ceEEECCCCCchhHHHHHhhhhccccEEE
Q 003795 453 GILLCGPPGVGKTLLAKAVAGEAGVNFFS 481 (795)
Q Consensus 453 giLL~GPpGtGKTtLakaLA~el~~~~~~ 481 (795)
-|+|+|++|+||||+++.|+. ++.+++.
T Consensus 6 ~I~i~G~~GSGKST~~~~L~~-lg~~~id 33 (218)
T 1vht_A 6 IVALTGGIGSGKSTVANAFAD-LGINVID 33 (218)
T ss_dssp EEEEECCTTSCHHHHHHHHHH-TTCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHH-cCCEEEE
Confidence 388999999999999999998 7766554
No 315
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.29 E-value=0.012 Score=60.74 Aligned_cols=35 Identities=23% Similarity=0.322 Sum_probs=28.7
Q ss_pred eEEECCCCCchhHHHHHhhhhcccc--------EEEeecccee
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEAGVN--------FFSISASQFV 488 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el~~~--------~~~is~se~~ 488 (795)
|.|.|++|+||||+++.|+..++.+ ...++..++.
T Consensus 25 I~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~ 67 (252)
T 1uj2_A 25 IGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFY 67 (252)
T ss_dssp EEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGB
T ss_pred EEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccc
Confidence 8999999999999999999988865 3356666554
No 316
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.28 E-value=0.034 Score=59.03 Aligned_cols=45 Identities=22% Similarity=0.110 Sum_probs=30.3
Q ss_pred HHHHHHHhccccccccccCcccCCceEEECCCCCchhHHHHHhhhhc
Q 003795 429 ELEEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEA 475 (795)
Q Consensus 429 ~l~~lv~~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el 475 (795)
..+++...|.... ..+++..+..++++|++|+||||++..||+.+
T Consensus 78 ~~~~l~~~~~~~~--~~i~~~~~~~i~i~g~~G~GKTT~~~~la~~~ 122 (295)
T 1ls1_A 78 VYEALKEALGGEA--RLPVLKDRNLWFLVGLQGSGKTTTAAKLALYY 122 (295)
T ss_dssp HHHHHHHHTTSSC--CCCCCCSSEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCC--ceeecCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4455556564321 33444412238889999999999999999865
No 317
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.28 E-value=0.0054 Score=64.67 Aligned_cols=23 Identities=26% Similarity=0.455 Sum_probs=21.1
Q ss_pred eEEECCCCCchhHHHHHhhhhcc
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEAG 476 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el~ 476 (795)
++|.||||+|||||++.|++.+.
T Consensus 38 ~~i~G~~G~GKTTl~~~ia~~~~ 60 (296)
T 1cr0_A 38 IMVTSGSGMGKSTFVRQQALQWG 60 (296)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHHH
Confidence 88999999999999999999763
No 318
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.27 E-value=0.0088 Score=70.03 Aligned_cols=48 Identities=27% Similarity=0.363 Sum_probs=34.4
Q ss_pred HHHHhcccc-ccccccCcccCCc--eEEECCCCCchhHHHHHhhhhccccEE
Q 003795 432 EIVKFFTHG-EMYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEAGVNFF 480 (795)
Q Consensus 432 ~lv~~~~~~-~~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el~~~~~ 480 (795)
++...|+.. ..+.+++ .++.| +.|+||||+|||||+++|+|.+.+..+
T Consensus 96 ~ls~~yg~~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G 146 (607)
T 3bk7_A 96 DCVHRYGVNAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLC 146 (607)
T ss_dssp SEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTT
T ss_pred CeEEEECCCCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCC
Confidence 344445433 2455566 66666 889999999999999999998765443
No 319
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.26 E-value=0.011 Score=59.41 Aligned_cols=23 Identities=26% Similarity=0.582 Sum_probs=21.3
Q ss_pred eEEECCCCCchhHHHHHhhhhcc
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEAG 476 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el~ 476 (795)
++|+||+|+|||||++.|++...
T Consensus 22 ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 22 LVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEECcCCCCHHHHHHHHHhhCC
Confidence 88999999999999999998764
No 320
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.26 E-value=0.0077 Score=59.93 Aligned_cols=23 Identities=48% Similarity=0.843 Sum_probs=21.5
Q ss_pred eEEECCCCCchhHHHHHhhhhcc
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEAG 476 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el~ 476 (795)
++|+||||+||||+++.|+..++
T Consensus 15 i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 15 LVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp EEEECCTTSCHHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHhCc
Confidence 89999999999999999998874
No 321
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=95.23 E-value=0.031 Score=64.41 Aligned_cols=143 Identities=13% Similarity=0.172 Sum_probs=73.5
Q ss_pred ceEEECCCCCchhHHHHHhhh----hccccE---EEeecccee-----hh------hhccc-------------hhhHHh
Q 003795 453 GILLCGPPGVGKTLLAKAVAG----EAGVNF---FSISASQFV-----EI------YVGVG-------------ASRVRS 501 (795)
Q Consensus 453 giLL~GPpGtGKTtLakaLA~----el~~~~---~~is~se~~-----~~------~~g~~-------------~~~l~~ 501 (795)
.+.|+|+.|+||||||+.+++ .....| +.++.+... .. .++.. ...+..
T Consensus 154 vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~ 233 (549)
T 2a5y_B 154 FLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKR 233 (549)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHHHhcCcccccccccccccHHHHHH
Confidence 388999999999999999995 332221 223333311 00 01110 001122
Q ss_pred HHHHHHhcC-CceeEhHHHHHHhhhccCCCCCCcchHHHHHHHHHHhhhcccCCCcEEEEeccCCCCCCCccccCCCccc
Q 003795 502 LYQEAKDNA-PSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVCLDGFEGRGNVITIASTNRPDILDPALVRPGRFD 580 (795)
Q Consensus 502 lf~~ar~~~-p~Il~IDEID~l~~~r~~~~~Sgge~~r~~l~~LL~~ld~~~~~~~VlVIatTN~~d~LdpaLlrpgRFd 580 (795)
.+....... ..++++|+++... .+ .+. . ..+..||.||....... .. +..+
T Consensus 234 ~l~~~L~~~kr~LlVLDdv~~~~----------------~~-~~~-~------~~gs~ilvTTR~~~v~~-~~---~~~~ 285 (549)
T 2a5y_B 234 MICNALIDRPNTLFVFDDVVQEE----------------TI-RWA-Q------ELRLRCLVTTRDVEISN-AA---SQTC 285 (549)
T ss_dssp HHHHHHTTSTTEEEEEEEECCHH----------------HH-HHH-H------HTTCEEEEEESBGGGGG-GC---CSCE
T ss_pred HHHHHHcCCCcEEEEEECCCCch----------------hh-ccc-c------cCCCEEEEEcCCHHHHH-Hc---CCCC
Confidence 222222332 6688888875431 11 111 1 13446777776543211 11 1133
Q ss_pred ceecCCCCCHHHHHHHHHHHHccCCCCChh--hHHHHHhhCCCCc
Q 003795 581 RKIFIPKPGLIGRMEILKVHARKKPMADDV--DYLAVASMTDGMV 623 (795)
Q Consensus 581 ~~I~~~~Pd~~eR~~Il~~~l~~~~~~~d~--dl~~LA~~t~G~s 623 (795)
..+.+++.+.++-.++|..+.......+.. ....++..+.|..
T Consensus 286 ~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlP 330 (549)
T 2a5y_B 286 EFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNP 330 (549)
T ss_dssp EEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCH
T ss_pred eEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCCh
Confidence 568899999999999998875433221111 2345666666543
No 322
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.21 E-value=0.013 Score=65.91 Aligned_cols=31 Identities=32% Similarity=0.420 Sum_probs=24.7
Q ss_pred eEEECCCCCchhHHHHHhhhhc----cccEEEeec
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEA----GVNFFSISA 484 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el----~~~~~~is~ 484 (795)
++|.|+||+|||+|+..+|... +.+++.++.
T Consensus 206 iiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~ 240 (454)
T 2r6a_A 206 IIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL 240 (454)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 8999999999999999998754 335665553
No 323
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.19 E-value=0.0046 Score=61.35 Aligned_cols=26 Identities=23% Similarity=0.135 Sum_probs=23.0
Q ss_pred ceEEECCCCCchhHHHHHhhhhcccc
Q 003795 453 GILLCGPPGVGKTLLAKAVAGEAGVN 478 (795)
Q Consensus 453 giLL~GPpGtGKTtLakaLA~el~~~ 478 (795)
-|+|+|++|+||||+++.|+..++..
T Consensus 12 ~I~l~G~~GsGKST~~~~L~~~l~~~ 37 (212)
T 2wwf_A 12 FIVFEGLDRSGKSTQSKLLVEYLKNN 37 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 38999999999999999999977654
No 324
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.15 E-value=0.01 Score=64.44 Aligned_cols=32 Identities=22% Similarity=0.344 Sum_probs=27.8
Q ss_pred ceEEECCCCCchhHHHHHhhhhccccEEEeec
Q 003795 453 GILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (795)
Q Consensus 453 giLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (795)
-|+|+||+|+|||+|+..||..++..++..+.
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds 73 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAAHFPLEVINSDK 73 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHTTSCEEEEECCS
T ss_pred eEEEECCCCCCHHHHHHHHHHHCCCcEEcccc
Confidence 38999999999999999999999877766553
No 325
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=95.13 E-value=0.0088 Score=65.35 Aligned_cols=26 Identities=19% Similarity=0.300 Sum_probs=23.9
Q ss_pred eEEECCCCCchhHHHHHhhhhccccE
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEAGVNF 479 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el~~~~ 479 (795)
+.|+||||+|||||+++|++...+..
T Consensus 173 ~~IvG~nGsGKSTLlk~L~gl~~~~~ 198 (365)
T 1lw7_A 173 VAILGGESSGKSVLVNKLAAVFNTTS 198 (365)
T ss_dssp EEEECCTTSHHHHHHHHHHHHTTCEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCc
Confidence 89999999999999999999887654
No 326
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.10 E-value=0.013 Score=58.31 Aligned_cols=22 Identities=27% Similarity=0.294 Sum_probs=20.8
Q ss_pred eEEECCCCCchhHHHHHhhhhc
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEA 475 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el 475 (795)
+.|+||+|+||||+++.|++.+
T Consensus 25 i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 25 LGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp EEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 8899999999999999999976
No 327
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.08 E-value=0.054 Score=57.63 Aligned_cols=54 Identities=24% Similarity=0.166 Sum_probs=33.8
Q ss_pred HHHHHHHhccccccccc-cCcccC-CceEEECCCCCchhHHHHHhhhhc---cccEEEeec
Q 003795 429 ELEEIVKFFTHGEMYRR-RGVRIP-GGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISA 484 (795)
Q Consensus 429 ~l~~lv~~~~~~~~~~~-~gl~i~-~giLL~GPpGtGKTtLakaLA~el---~~~~~~is~ 484 (795)
..+++...++... .. +.+..+ .-++++|++|+||||++..||+.+ +..+..++.
T Consensus 76 ~~~~l~~~~~~~~--~~~i~~~~~~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~ 134 (297)
T 1j8m_F 76 VYDELSNLFGGDK--EPKVIPDKIPYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGA 134 (297)
T ss_dssp HHHHHHHHTTCSC--CCCCSCSSSSEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEEC
T ss_pred HHHHHHHHhcccc--ccccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEec
Confidence 3445555564332 22 333333 338889999999999999999865 334444444
No 328
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.07 E-value=0.011 Score=60.16 Aligned_cols=28 Identities=32% Similarity=0.625 Sum_probs=25.0
Q ss_pred eEEECCCCCchhHHHHHhhhhccccEEE
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEAGVNFFS 481 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el~~~~~~ 481 (795)
|.|+|++|+||||+++.|++.++.+++.
T Consensus 19 i~i~G~~gsGKst~~~~l~~~lg~~~~d 46 (236)
T 1q3t_A 19 IAIDGPASSGKSTVAKIIAKDFGFTYLD 46 (236)
T ss_dssp EEEECSSCSSHHHHHHHHHHHHCCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 8999999999999999999988876543
No 329
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=94.99 E-value=0.0071 Score=67.69 Aligned_cols=29 Identities=28% Similarity=0.471 Sum_probs=22.9
Q ss_pred cCcccCCc----eEEECCCCCchhHHHHHhhhh
Q 003795 446 RGVRIPGG----ILLCGPPGVGKTLLAKAVAGE 474 (795)
Q Consensus 446 ~gl~i~~g----iLL~GPpGtGKTtLakaLA~e 474 (795)
+++.++.| ++|+||||+|||||+++|+|.
T Consensus 33 vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 33 VNKSVSQGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp HHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred CceEecCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 34444444 689999999999999999986
No 330
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.95 E-value=0.0062 Score=60.43 Aligned_cols=26 Identities=19% Similarity=0.196 Sum_probs=22.6
Q ss_pred ceEEECCCCCchhHHHHHhhhhcccc
Q 003795 453 GILLCGPPGVGKTLLAKAVAGEAGVN 478 (795)
Q Consensus 453 giLL~GPpGtGKTtLakaLA~el~~~ 478 (795)
-|+|+|++|+||||+++.|+..++..
T Consensus 11 ~I~l~G~~GsGKsT~~~~L~~~l~~~ 36 (215)
T 1nn5_A 11 LIVLEGVDRAGKSTQSRKLVEALCAA 36 (215)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 38999999999999999999876543
No 331
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=94.95 E-value=0.0058 Score=69.47 Aligned_cols=41 Identities=15% Similarity=0.106 Sum_probs=30.7
Q ss_pred cccccCcccCC-ceEEECCCCCchhHHHHHhhhhccccEEEe
Q 003795 442 MYRRRGVRIPG-GILLCGPPGVGKTLLAKAVAGEAGVNFFSI 482 (795)
Q Consensus 442 ~~~~~gl~i~~-giLL~GPpGtGKTtLakaLA~el~~~~~~i 482 (795)
.+.++++.++. -+.|+||||+|||||+++|++.+.+..+.+
T Consensus 19 ~l~~vsl~i~~e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I 60 (483)
T 3euj_A 19 GFFARTFDFDELVTTLSGGNGAGKSTTMAGFVTALIPDLTLL 60 (483)
T ss_dssp TEEEEEEECCSSEEEEECCTTSSHHHHHHHHHHHHCCCTTTC
T ss_pred cccceEEEEccceEEEECCCCCcHHHHHHHHhcCCCCCCCEE
Confidence 34455555554 488999999999999999999876654433
No 332
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=94.92 E-value=0.015 Score=58.12 Aligned_cols=31 Identities=26% Similarity=0.370 Sum_probs=25.3
Q ss_pred eEEECCCCCchhHHHHHhhhhcc----ccEEEeec
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEAG----VNFFSISA 484 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el~----~~~~~is~ 484 (795)
++|.|++|+||||+++.|++.++ .+++.++.
T Consensus 28 i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~ 62 (211)
T 1m7g_A 28 IWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDG 62 (211)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECH
T ss_pred EEEECCCCCCHHHHHHHHHHHhccccCCcEEEECC
Confidence 88999999999999999999775 33555553
No 333
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=94.92 E-value=0.0076 Score=64.50 Aligned_cols=25 Identities=28% Similarity=0.283 Sum_probs=22.5
Q ss_pred eEEECCCCCchhHHHHHhhhhcccc
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEAGVN 478 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el~~~ 478 (795)
++|+||||+||||+++.||+.+.+.
T Consensus 105 i~lvG~nGsGKTTll~~Lagll~~~ 129 (304)
T 1rj9_A 105 VLVVGVNGVGKTTTIAKLGRYYQNL 129 (304)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred EEEECCCCCcHHHHHHHHHHHHHhc
Confidence 8899999999999999999987543
No 334
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=94.88 E-value=0.013 Score=55.73 Aligned_cols=27 Identities=30% Similarity=0.398 Sum_probs=21.7
Q ss_pred ccCCc-eEEECCCCCchhHHHHHhhhhc
Q 003795 449 RIPGG-ILLCGPPGVGKTLLAKAVAGEA 475 (795)
Q Consensus 449 ~i~~g-iLL~GPpGtGKTtLakaLA~el 475 (795)
....| .+|+||||+|||+++.+|.-.+
T Consensus 20 ~f~~g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 20 EFKEGINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp ECCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EcCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 33344 7899999999999999998644
No 335
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.88 E-value=0.01 Score=57.84 Aligned_cols=23 Identities=39% Similarity=0.557 Sum_probs=21.5
Q ss_pred eEEECCCCCchhHHHHHhhhhcc
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEAG 476 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el~ 476 (795)
++|+|++|+||||+++.|+..++
T Consensus 16 i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 16 VWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 88999999999999999999875
No 336
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=94.84 E-value=0.035 Score=56.95 Aligned_cols=34 Identities=26% Similarity=0.510 Sum_probs=27.3
Q ss_pred eEEECCCCCchhHHHHHhhhhccccEEEeeccceeh
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVE 489 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el~~~~~~is~se~~~ 489 (795)
+.|.||||+||||+++.|+..++.+.+ +.+++..
T Consensus 11 ~~~~G~pGsGKsT~a~~L~~~~g~~~i--s~gdllR 44 (230)
T 3gmt_A 11 LILLGAPGAGKGTQANFIKEKFGIPQI--STGDMLR 44 (230)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCCEE--CHHHHHH
T ss_pred eeeECCCCCCHHHHHHHHHHHhCCCee--echHHHH
Confidence 689999999999999999999887654 4444433
No 337
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=94.78 E-value=0.014 Score=63.35 Aligned_cols=31 Identities=32% Similarity=0.349 Sum_probs=26.0
Q ss_pred ceEEECCCCCchhHHHHHhhhhccccEEEee
Q 003795 453 GILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 483 (795)
Q Consensus 453 giLL~GPpGtGKTtLakaLA~el~~~~~~is 483 (795)
-|+|.||+|+|||||++.||..++..++..+
T Consensus 9 lI~I~GptgSGKTtla~~La~~l~~~iis~D 39 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKKFNGEIISGD 39 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTEEEEECC
T ss_pred eEEEECCCcCcHHHHHHHHHHHcCCceeccc
Confidence 4889999999999999999999886554443
No 338
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.78 E-value=0.014 Score=75.27 Aligned_cols=114 Identities=21% Similarity=0.241 Sum_probs=66.6
Q ss_pred ccCCc--eEEECCCCCchhHHHHHhhhh---ccccEEEeeccceehh----------------hhccchhhHHhHHHHHH
Q 003795 449 RIPGG--ILLCGPPGVGKTLLAKAVAGE---AGVNFFSISASQFVEI----------------YVGVGASRVRSLYQEAK 507 (795)
Q Consensus 449 ~i~~g--iLL~GPpGtGKTtLakaLA~e---l~~~~~~is~se~~~~----------------~~g~~~~~l~~lf~~ar 507 (795)
-+|+| +.++||.|+|||||+-.++.+ .|-....++..+-... +...++..+..+...++
T Consensus 1427 G~prg~~iei~g~~~sGkttl~~~~~a~~~~~g~~~~~i~~e~~~~~~~~~~~Gv~~~~l~~~~p~~~e~~l~~~~~~~~ 1506 (1706)
T 3cmw_A 1427 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 1506 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCCCCHHHHHHcCCCHHHeEEeCCCcHHHHHHHHHHHHH
Confidence 34555 999999999999998666543 2555666665432222 22233444555667788
Q ss_pred hcCCceeEhHHHHHHhhhccCCCC----CCcchHHHHHHHHHHhhhcccCCCcEEEEecc
Q 003795 508 DNAPSVVFIDELDAVGRERGLIKG----SGGQERDATLNQLLVCLDGFEGRGNVITIAST 563 (795)
Q Consensus 508 ~~~p~Il~IDEID~l~~~r~~~~~----Sgge~~r~~l~~LL~~ld~~~~~~~VlVIatT 563 (795)
..+++++++|-+.++.+.....+. .-|-..+.+ .+.|..|.+.....++++|.+.
T Consensus 1507 s~~~~~vvvDsv~al~~~~e~~~~~~~~~~~~~ar~m-~~~lr~l~~~~~~~~~~~i~~~ 1565 (1706)
T 3cmw_A 1507 SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMM-SQAMRKLAGNLKQSNTLLIFIN 1565 (1706)
T ss_dssp HTCCSEEEESCSTTCCCTTTTC-------CCHHHHHH-HHHHHHHHHHHHHHTCEEEEEE
T ss_pred cCCCCEEEEccHHhCCccccccccccccchhHHHHHH-HHHHHHHHHHHHhCCcEEEEee
Confidence 899999999999888765332211 122233333 3333344443344555666554
No 339
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=94.77 E-value=0.03 Score=57.30 Aligned_cols=32 Identities=25% Similarity=0.260 Sum_probs=25.9
Q ss_pred eEEECCCCCchhHHHHHhhhhccccEEEeecc
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEAGVNFFSISAS 485 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el~~~~~~is~s 485 (795)
++++||+|+|||.++-+++...+...+.+...
T Consensus 111 ~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~ 142 (237)
T 2fz4_A 111 GCIVLPTGSGKTHVAMAAINELSTPTLIVVPT 142 (237)
T ss_dssp EEEEESSSTTHHHHHHHHHHHSCSCEEEEESS
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCC
Confidence 79999999999999988888776666655544
No 340
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=94.75 E-value=0.015 Score=62.27 Aligned_cols=33 Identities=33% Similarity=0.471 Sum_probs=27.7
Q ss_pred CceEEECCCCCchhHHHHHhhhhccccEEEeec
Q 003795 452 GGILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (795)
Q Consensus 452 ~giLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (795)
.-++|+||+|+|||+|+..||..++..++..+.
T Consensus 11 ~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds 43 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRKILPVELISVDS 43 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEECCT
T ss_pred cEEEEECCCccCHHHHHHHHHHhCCCcEEeccc
Confidence 348899999999999999999998877665543
No 341
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=94.72 E-value=0.015 Score=58.05 Aligned_cols=29 Identities=38% Similarity=0.580 Sum_probs=25.7
Q ss_pred ceEEECCCCCchhHHHHHhhhhccccEEE
Q 003795 453 GILLCGPPGVGKTLLAKAVAGEAGVNFFS 481 (795)
Q Consensus 453 giLL~GPpGtGKTtLakaLA~el~~~~~~ 481 (795)
.|.|+|++|+||||+++.|+..++.+++.
T Consensus 5 ~i~i~G~~gsGkst~~~~l~~~~g~~~~~ 33 (219)
T 2h92_A 5 NIALDGPAAAGKSTIAKRVASELSMIYVD 33 (219)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceec
Confidence 48999999999999999999998876654
No 342
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=94.70 E-value=0.0086 Score=58.61 Aligned_cols=33 Identities=15% Similarity=0.112 Sum_probs=26.9
Q ss_pred ceEEECCCCCchhHHHHHhhhhcccc---EEEeecc
Q 003795 453 GILLCGPPGVGKTLLAKAVAGEAGVN---FFSISAS 485 (795)
Q Consensus 453 giLL~GPpGtGKTtLakaLA~el~~~---~~~is~s 485 (795)
.+.|+|++|+|||||++.|++.+.+. .+.+...
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~d 39 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRH 39 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC-
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEc
Confidence 37899999999999999999987655 6666544
No 343
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=94.67 E-value=0.013 Score=64.28 Aligned_cols=31 Identities=26% Similarity=0.494 Sum_probs=25.0
Q ss_pred cccCcccCCc-eEEECCCCCchhHHHHHhhhh
Q 003795 444 RRRGVRIPGG-ILLCGPPGVGKTLLAKAVAGE 474 (795)
Q Consensus 444 ~~~gl~i~~g-iLL~GPpGtGKTtLakaLA~e 474 (795)
.+..+.++.| ++|+||||+|||||+.+|+..
T Consensus 15 ~~~~i~~~~g~~~i~G~NGaGKTTll~ai~~a 46 (365)
T 3qf7_A 15 KNVDIEFQSGITVVEGPNGAGKSSLFEAISFA 46 (365)
T ss_dssp EEEEEECCSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred cceEEecCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4445666666 789999999999999999854
No 344
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.63 E-value=0.019 Score=57.01 Aligned_cols=24 Identities=38% Similarity=0.589 Sum_probs=21.3
Q ss_pred eEEECCCCCchhHHHHHhhhhccc
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEAGV 477 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el~~ 477 (795)
|+|+||+|+|||||++.|......
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~ 27 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPD 27 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTT
T ss_pred EEEECCCCCCHHHHHHHHHHhCCC
Confidence 899999999999999999877543
No 345
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.62 E-value=0.0056 Score=66.84 Aligned_cols=29 Identities=24% Similarity=0.554 Sum_probs=26.0
Q ss_pred ceEEECCCCCchhHHHHHhhhhccccEEE
Q 003795 453 GILLCGPPGVGKTLLAKAVAGEAGVNFFS 481 (795)
Q Consensus 453 giLL~GPpGtGKTtLakaLA~el~~~~~~ 481 (795)
.++|+||||+||||++++||+.++.+++.
T Consensus 26 ~i~l~G~~G~GKTTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 26 CVILVGSPGSGKSTIAEELCQIINEKYHT 54 (359)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 38999999999999999999999887744
No 346
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.61 E-value=0.021 Score=61.60 Aligned_cols=24 Identities=21% Similarity=0.257 Sum_probs=21.8
Q ss_pred ceEEECCCCCchhHHHHHhhhhcc
Q 003795 453 GILLCGPPGVGKTLLAKAVAGEAG 476 (795)
Q Consensus 453 giLL~GPpGtGKTtLakaLA~el~ 476 (795)
-+.|.||+|+|||||++.|++.++
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 388999999999999999999765
No 347
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.59 E-value=0.032 Score=59.76 Aligned_cols=31 Identities=26% Similarity=0.231 Sum_probs=24.2
Q ss_pred eEEECCCCCchhHHHHHhhhhc---cccEEEeec
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEA---GVNFFSISA 484 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el---~~~~~~is~ 484 (795)
++|.|+||+|||+|+..+|... +.+.+.++.
T Consensus 71 ~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~sl 104 (315)
T 3bh0_A 71 VLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 104 (315)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEEC
Confidence 8999999999999999988643 345555554
No 348
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=94.57 E-value=0.013 Score=61.80 Aligned_cols=26 Identities=35% Similarity=0.491 Sum_probs=22.0
Q ss_pred ceEEECCCCCchhHHHHHhhhhc-ccc
Q 003795 453 GILLCGPPGVGKTLLAKAVAGEA-GVN 478 (795)
Q Consensus 453 giLL~GPpGtGKTtLakaLA~el-~~~ 478 (795)
-|+|.|+||+||||+++.|+... +..
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~~~~~~~ 30 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIAKNPGFY 30 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHSTTEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhCCCcE
Confidence 38999999999999999999863 443
No 349
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=94.56 E-value=0.015 Score=61.92 Aligned_cols=31 Identities=26% Similarity=0.357 Sum_probs=23.4
Q ss_pred eEEECCCCCchhHHHHHhhhhccccEEEeec
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEAGVNFFSISA 484 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el~~~~~~is~ 484 (795)
+.|+||||+|||||+++|++...+..+.+..
T Consensus 172 v~l~G~sG~GKSTll~~l~g~~~~~~G~i~~ 202 (301)
T 1u0l_A 172 STMAGLSGVGKSSLLNAINPGLKLRVSEVSE 202 (301)
T ss_dssp EEEECSTTSSHHHHHHHHSTTCCCC------
T ss_pred EEEECCCCCcHHHHHHHhcccccccccceec
Confidence 6899999999999999999988777666653
No 350
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=94.53 E-value=0.0058 Score=67.53 Aligned_cols=36 Identities=22% Similarity=0.428 Sum_probs=30.0
Q ss_pred ccccccCcccCCc-eEEECCCCCchhHHHHHhhhhcc
Q 003795 441 EMYRRRGVRIPGG-ILLCGPPGVGKTLLAKAVAGEAG 476 (795)
Q Consensus 441 ~~~~~~gl~i~~g-iLL~GPpGtGKTtLakaLA~el~ 476 (795)
..+.++.+.+..| ++|+||||+|||||+++|+..++
T Consensus 49 ~~l~~v~l~~~~G~~~lvG~NGaGKStLl~aI~~l~~ 85 (415)
T 4aby_A 49 ATITQLELELGGGFCAFTGETGAGKSIIVDALGLLLG 85 (415)
T ss_dssp TTEEEEEEECCSSEEEEEESHHHHHHHHTHHHHHHTT
T ss_pred cceeeEEEecCCCcEEEECCCCCCHHHHHHHHHHHhC
Confidence 4566777888777 78999999999999999987664
No 351
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.53 E-value=0.0097 Score=64.40 Aligned_cols=24 Identities=29% Similarity=0.282 Sum_probs=22.0
Q ss_pred eEEECCCCCchhHHHHHhhhhccc
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEAGV 477 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el~~ 477 (795)
++|+||||+||||+++.||+.+.+
T Consensus 132 i~lvG~nGaGKTTll~~Lag~l~~ 155 (328)
T 3e70_C 132 IMFVGFNGSGKTTTIAKLANWLKN 155 (328)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHh
Confidence 899999999999999999997644
No 352
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=94.49 E-value=0.019 Score=61.65 Aligned_cols=30 Identities=27% Similarity=0.336 Sum_probs=25.7
Q ss_pred eEEECCCCCchhHHHHHhhhhccccEEEee
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 483 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el~~~~~~is 483 (795)
|+|.||+|+|||+|+..||..++..++..+
T Consensus 6 i~i~GptgsGKt~la~~La~~~~~~iis~D 35 (322)
T 3exa_A 6 VAIVGPTAVGKTKTSVMLAKRLNGEVISGD 35 (322)
T ss_dssp EEEECCTTSCHHHHHHHHHHTTTEEEEECC
T ss_pred EEEECCCcCCHHHHHHHHHHhCccceeecC
Confidence 789999999999999999999876655444
No 353
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.46 E-value=0.014 Score=61.45 Aligned_cols=27 Identities=26% Similarity=0.434 Sum_probs=23.2
Q ss_pred eEEECCCCCchhHHHHHhhhhccccEEE
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEAGVNFFS 481 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el~~~~~~ 481 (795)
|+|+|++|+||||+++.|+ .++.+++.
T Consensus 78 I~I~G~~GSGKSTva~~La-~lg~~~id 104 (281)
T 2f6r_A 78 LGLTGISGSGKSSVAQRLK-NLGAYIID 104 (281)
T ss_dssp EEEEECTTSCHHHHHHHHH-HHTCEEEE
T ss_pred EEEECCCCCCHHHHHHHHH-HCCCcEEe
Confidence 8999999999999999999 56765543
No 354
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=94.44 E-value=0.0091 Score=59.23 Aligned_cols=24 Identities=29% Similarity=0.458 Sum_probs=21.7
Q ss_pred eEEECCCCCchhHHHHHhhhhccc
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEAGV 477 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el~~ 477 (795)
|+|.|++|+||||+++.|+..++.
T Consensus 3 I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHh
Confidence 689999999999999999998753
No 355
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=94.38 E-value=0.018 Score=56.61 Aligned_cols=22 Identities=32% Similarity=0.536 Sum_probs=20.3
Q ss_pred eEEECCCCCchhHHHHHhhhhc
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEA 475 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el 475 (795)
++|+|++|+|||||++.+++..
T Consensus 8 v~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 8 VVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 7999999999999999999863
No 356
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=94.32 E-value=0.012 Score=62.63 Aligned_cols=36 Identities=14% Similarity=0.254 Sum_probs=20.4
Q ss_pred HhccccccccccCcccCCceEEECCCCCchhHHHHHhhhh
Q 003795 435 KFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGE 474 (795)
Q Consensus 435 ~~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~e 474 (795)
..|+.......+.++ |+|+||||+|||||++.|++.
T Consensus 6 ~~~~~~~~l~~~~~~----I~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 6 NQVHRKSVKKGFEFT----LMVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp ------------CEE----EEEEEETTSSHHHHHHHHHC-
T ss_pred ceECCEEEEcCCCEE----EEEECCCCCCHHHHHHHHhCC
Confidence 334433344444444 499999999999999999875
No 357
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=94.31 E-value=0.02 Score=58.17 Aligned_cols=21 Identities=29% Similarity=0.346 Sum_probs=20.2
Q ss_pred eEEECCCCCchhHHHHHhhhh
Q 003795 454 ILLCGPPGVGKTLLAKAVAGE 474 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~e 474 (795)
+.|.|++|+||||+++.|++.
T Consensus 23 i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 23 VLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp EEEECSTTSCHHHHHHTTGGG
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 889999999999999999997
No 358
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=94.30 E-value=0.029 Score=62.96 Aligned_cols=31 Identities=32% Similarity=0.412 Sum_probs=24.5
Q ss_pred eEEECCCCCchhHHHHHhhhhc----cccEEEeec
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEA----GVNFFSISA 484 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el----~~~~~~is~ 484 (795)
++|.|+||+|||+|+..+|... +.+++.++.
T Consensus 203 ~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl 237 (444)
T 2q6t_A 203 NIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL 237 (444)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 8999999999999999888643 445666654
No 359
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=94.27 E-value=0.016 Score=63.45 Aligned_cols=30 Identities=30% Similarity=0.453 Sum_probs=24.1
Q ss_pred eEEECCCCCchhHHHHHhhhhcc-ccEEEee
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEAG-VNFFSIS 483 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el~-~~~~~is 483 (795)
++|+||||+|||||+++|++... +..+.+.
T Consensus 218 ~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~ 248 (358)
T 2rcn_A 218 SIFAGQSGVGKSSLLNALLGLQNEILTNDVS 248 (358)
T ss_dssp EEEECCTTSSHHHHHHHHHCCSSCCCCC---
T ss_pred EEEECCCCccHHHHHHHHhccccccccCCcc
Confidence 78999999999999999999876 6555544
No 360
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=94.26 E-value=0.02 Score=62.68 Aligned_cols=34 Identities=26% Similarity=0.275 Sum_probs=27.2
Q ss_pred cccccCcccCCc-eEEECCCCCchhHHHHHhhhhc
Q 003795 442 MYRRRGVRIPGG-ILLCGPPGVGKTLLAKAVAGEA 475 (795)
Q Consensus 442 ~~~~~gl~i~~g-iLL~GPpGtGKTtLakaLA~el 475 (795)
.+....+.++.| .+|+||||+||||++++|+...
T Consensus 16 ~~~~~~~~~~~g~~~i~G~nG~GKttll~ai~~~~ 50 (359)
T 2o5v_A 16 NLAPGTLNFPEGVTGIYGENGAGKTNLLEAAYLAL 50 (359)
T ss_dssp TCCSEEEECCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceeeeEEEEcCCeEEEECCCCCChhHHHHHHHHhc
Confidence 345566676666 7899999999999999998754
No 361
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.25 E-value=0.1 Score=58.36 Aligned_cols=43 Identities=23% Similarity=0.130 Sum_probs=29.2
Q ss_pred HHHHHhccccccccccCcccCCceEEECCCCCchhHHHHHhhhhc
Q 003795 431 EEIVKFFTHGEMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEA 475 (795)
Q Consensus 431 ~~lv~~~~~~~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el 475 (795)
+++...|+... ..+++..+..++++|++|+||||++..||+.+
T Consensus 80 ~~L~~~~~~~~--~~i~l~~~~vi~i~G~~GsGKTT~~~~LA~~l 122 (425)
T 2ffh_A 80 EALKEALGGEA--RLPVLKDRNLWFLVGLQGSGKTTTAAKLALYY 122 (425)
T ss_dssp HHHHHHTTSSC--CCCCCCSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHhCCCc--ccccCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34555554332 33444422338889999999999999999866
No 362
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=94.25 E-value=0.013 Score=67.42 Aligned_cols=41 Identities=24% Similarity=0.294 Sum_probs=28.2
Q ss_pred ccCc-ccCCc--eEEECCCCCchhHHHHH--hhhhcc--ccEEEeecc
Q 003795 445 RRGV-RIPGG--ILLCGPPGVGKTLLAKA--VAGEAG--VNFFSISAS 485 (795)
Q Consensus 445 ~~gl-~i~~g--iLL~GPpGtGKTtLaka--LA~el~--~~~~~is~s 485 (795)
++.+ .++.| ++|+||||+|||||++. +++... ...++++..
T Consensus 30 ~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~ 77 (525)
T 1tf7_A 30 DISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFE 77 (525)
T ss_dssp HHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred HhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 3344 55555 89999999999999999 566543 234455543
No 363
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=94.24 E-value=0.018 Score=56.45 Aligned_cols=22 Identities=32% Similarity=0.536 Sum_probs=20.5
Q ss_pred eEEECCCCCchhHHHHHhhhhc
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEA 475 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el 475 (795)
++|+|++|+|||||++.+++..
T Consensus 32 v~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 32 VVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 7999999999999999999864
No 364
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=94.24 E-value=0.031 Score=60.57 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=20.3
Q ss_pred eEEECCCCCchhHHHHHhhhhc
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEA 475 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el 475 (795)
+.|+|+||+|||||++.|++.+
T Consensus 59 i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 59 LGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp EEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHH
Confidence 8899999999999999998764
No 365
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=94.22 E-value=0.022 Score=58.22 Aligned_cols=24 Identities=33% Similarity=0.387 Sum_probs=22.0
Q ss_pred eEEECCCCCchhHHHHHhhhhccc
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEAGV 477 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el~~ 477 (795)
|+|.||+|+||||+++.|+..++.
T Consensus 29 i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 29 ITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTT
T ss_pred EEEEcCCCCCHHHHHHHHHHHHhc
Confidence 889999999999999999998763
No 366
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=94.18 E-value=0.017 Score=64.39 Aligned_cols=26 Identities=27% Similarity=0.422 Sum_probs=23.3
Q ss_pred eEEECCCCCchhHHHHHhhhhccccE
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEAGVNF 479 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el~~~~ 479 (795)
|+|+|+||+||||+++.|+..++..+
T Consensus 261 Iil~G~pGSGKSTla~~L~~~~~~~~ 286 (416)
T 3zvl_A 261 VVAVGFPGAGKSTFIQEHLVSAGYVH 286 (416)
T ss_dssp EEEESCTTSSHHHHHHHHTGGGTCEE
T ss_pred EEEECCCCCCHHHHHHHHHHhcCcEE
Confidence 88999999999999999999886544
No 367
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.08 E-value=0.026 Score=56.73 Aligned_cols=30 Identities=27% Similarity=0.406 Sum_probs=24.6
Q ss_pred CceEEECCCCCchhHHHHHhhhhccccEEEe
Q 003795 452 GGILLCGPPGVGKTLLAKAVAGEAGVNFFSI 482 (795)
Q Consensus 452 ~giLL~GPpGtGKTtLakaLA~el~~~~~~i 482 (795)
.+++|+||+|+|||+|+..|+.... .++..
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g~-~iIsd 64 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRGH-RLIAD 64 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTTC-EEEES
T ss_pred EEEEEECCCCCCHHHHHHHHHHhCC-eEEec
Confidence 3499999999999999999998765 44443
No 368
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=93.97 E-value=0.01 Score=66.41 Aligned_cols=30 Identities=20% Similarity=0.348 Sum_probs=23.4
Q ss_pred cccccCcccCCceEEECCCCCchhHHHHHhhhhc
Q 003795 442 MYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEA 475 (795)
Q Consensus 442 ~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el 475 (795)
.+.++++. |+|+||||+|||||+++|++..
T Consensus 26 vl~~vsf~----I~lvG~sGaGKSTLln~L~g~~ 55 (418)
T 2qag_C 26 VKRGFEFT----LMVVGESGLGKSTLINSLFLTD 55 (418)
T ss_dssp CC-CCCEE----EEEECCTTSSHHHHHHHHTTCC
T ss_pred EecCCCEE----EEEECCCCCcHHHHHHHHhCCC
Confidence 34444444 5999999999999999999864
No 369
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=93.96 E-value=0.01 Score=63.61 Aligned_cols=30 Identities=37% Similarity=0.562 Sum_probs=19.5
Q ss_pred eEEECCCCCchhHHHHHhhhhccccEEEee
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 483 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el~~~~~~is 483 (795)
+.|+||||+|||||+++|++...+..+.+.
T Consensus 176 ~~lvG~sG~GKSTLln~L~g~~~~~~G~I~ 205 (307)
T 1t9h_A 176 TVFAGQSGVGKSSLLNAISPELGLRTNEIS 205 (307)
T ss_dssp EEEEESHHHHHHHHHHHHCC----------
T ss_pred EEEECCCCCCHHHHHHHhccccccccccee
Confidence 899999999999999999998766555544
No 370
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=93.95 E-value=0.069 Score=54.20 Aligned_cols=19 Identities=26% Similarity=0.494 Sum_probs=16.4
Q ss_pred eEEECCCCCchhHHHHHhh
Q 003795 454 ILLCGPPGVGKTLLAKAVA 472 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA 472 (795)
+++.||+|+|||+++..+.
T Consensus 79 ~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 79 VIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEEeCCCCCcHHhHHHHH
Confidence 8999999999998776654
No 371
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=93.86 E-value=0.014 Score=65.19 Aligned_cols=24 Identities=21% Similarity=0.430 Sum_probs=21.5
Q ss_pred eEEECCCCCchhHHHHHhhhhccc
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEAGV 477 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el~~ 477 (795)
+.|+||||+|||||+++|+|...+
T Consensus 72 valvG~nGaGKSTLln~L~Gl~~p 95 (413)
T 1tq4_A 72 VAVTGETGSGKSSFINTLRGIGNE 95 (413)
T ss_dssp EEEEECTTSSHHHHHHHHHTCCTT
T ss_pred EEEECCCCCcHHHHHHHHhCCCCc
Confidence 789999999999999999996543
No 372
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=93.78 E-value=0.029 Score=59.53 Aligned_cols=24 Identities=25% Similarity=0.468 Sum_probs=22.1
Q ss_pred eEEECCCCCchhHHHHHhhhhccc
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEAGV 477 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el~~ 477 (795)
|.|.||+|+|||||++.|++.++.
T Consensus 34 i~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 34 IFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhhh
Confidence 889999999999999999998764
No 373
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=93.75 E-value=0.031 Score=55.89 Aligned_cols=28 Identities=29% Similarity=0.336 Sum_probs=22.4
Q ss_pred ccCCc-eEEECCCCCchhHHHHHhhhhcc
Q 003795 449 RIPGG-ILLCGPPGVGKTLLAKAVAGEAG 476 (795)
Q Consensus 449 ~i~~g-iLL~GPpGtGKTtLakaLA~el~ 476 (795)
....| .+|+||||+||||++.+|.-.++
T Consensus 20 ~f~~~~~~I~G~NgsGKStil~ai~~~l~ 48 (203)
T 3qks_A 20 EFKEGINLIIGQNGSGKSSLLDAILVGLY 48 (203)
T ss_dssp ECCSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EeCCCeEEEEcCCCCCHHHHHHHHHHHhc
Confidence 33344 78999999999999999976554
No 374
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=93.68 E-value=0.021 Score=67.49 Aligned_cols=28 Identities=39% Similarity=0.646 Sum_probs=24.8
Q ss_pred ccccccCcccCCc--eEEECCCCCchhHHH
Q 003795 441 EMYRRRGVRIPGG--ILLCGPPGVGKTLLA 468 (795)
Q Consensus 441 ~~~~~~gl~i~~g--iLL~GPpGtGKTtLa 468 (795)
..++++++.++.| +.|+||||+|||||+
T Consensus 32 ~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 32 HNLKNIDVEIPRGKLVVLTGLSGSGKSSLA 61 (670)
T ss_dssp TTCCSEEEEEETTSEEEEECSTTSSHHHHH
T ss_pred cceeccEEEECCCCEEEEECCCCCCHHHHh
Confidence 3567888999988 899999999999997
No 375
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=93.66 E-value=0.029 Score=59.49 Aligned_cols=35 Identities=23% Similarity=0.323 Sum_probs=24.3
Q ss_pred eEEECCCCCchhHHHHHhhhhcc---ccEEEeecccee
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEAG---VNFFSISASQFV 488 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el~---~~~~~is~se~~ 488 (795)
|.|.||+|+||||+++.|+..++ ..+..+++..+.
T Consensus 8 IgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~ 45 (290)
T 1a7j_A 8 ISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH 45 (290)
T ss_dssp EEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred EEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence 88999999999999999998766 334556655543
No 376
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=93.64 E-value=0.065 Score=53.59 Aligned_cols=67 Identities=24% Similarity=0.179 Sum_probs=39.6
Q ss_pred eEEECCCCCchh-HHHHHhhhhc--cccEEEeecc---ceehh---hhcc-----chhhHHhHHHHHHhcCCceeEhHHH
Q 003795 454 ILLCGPPGVGKT-LLAKAVAGEA--GVNFFSISAS---QFVEI---YVGV-----GASRVRSLYQEAKDNAPSVVFIDEL 519 (795)
Q Consensus 454 iLL~GPpGtGKT-tLakaLA~el--~~~~~~is~s---e~~~~---~~g~-----~~~~l~~lf~~ar~~~p~Il~IDEI 519 (795)
.+++||.|+||| .|++++.+.. +..+..++.. .+.+. ..|. .......+++..+ ..++|+|||+
T Consensus 23 ~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~~D~R~~~~i~S~~g~~~~A~~~~~~~d~~~~~~--~~DvIlIDEa 100 (195)
T 1w4r_A 23 QVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTHDRNTMEALPACLLRDVAQEAL--GVAVIGIDEG 100 (195)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEETTCCCGGGSCCHHHHHHSEEEEESSGGGGHHHHH--TCSEEEESSG
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccccCccchhhhhhccCCcccceecCCHHHHHHhcc--CCCEEEEEch
Confidence 788999999999 7888886633 4556666533 11111 1110 0111233444333 3579999999
Q ss_pred HHH
Q 003795 520 DAV 522 (795)
Q Consensus 520 D~l 522 (795)
..+
T Consensus 101 QFf 103 (195)
T 1w4r_A 101 QFF 103 (195)
T ss_dssp GGC
T ss_pred hhh
Confidence 777
No 377
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=93.58 E-value=0.037 Score=64.74 Aligned_cols=34 Identities=24% Similarity=0.311 Sum_probs=23.8
Q ss_pred cccCCceEEECCCCCchhHHHHHhhhhccc-cEEEe
Q 003795 448 VRIPGGILLCGPPGVGKTLLAKAVAGEAGV-NFFSI 482 (795)
Q Consensus 448 l~i~~giLL~GPpGtGKTtLakaLA~el~~-~~~~i 482 (795)
+.+|. +.|+||+|+|||||+++|+|...+ ..+.+
T Consensus 43 l~lp~-iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~v 77 (608)
T 3szr_A 43 LALPA-IAVIGDQSSGKSSVLEALSGVALPRGSGIV 77 (608)
T ss_dssp CCCCC-EECCCCTTSCHHHHHHHHHSCC-------C
T ss_pred ccCCe-EEEECCCCChHHHHHHHHhCCCCCCCCCeE
Confidence 44444 999999999999999999997644 34443
No 378
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=93.51 E-value=0.0046 Score=63.44 Aligned_cols=25 Identities=24% Similarity=0.226 Sum_probs=22.3
Q ss_pred eEEECCCCCchhHHHHHhhhhcccc
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEAGVN 478 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el~~~ 478 (795)
++|+||||+|||||+++|++.+.+.
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~~~~~ 54 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTALIPD 54 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHhcccccC
Confidence 6789999999999999999987654
No 379
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=93.50 E-value=0.032 Score=52.95 Aligned_cols=21 Identities=48% Similarity=0.779 Sum_probs=19.7
Q ss_pred eEEECCCCCchhHHHHHhhhh
Q 003795 454 ILLCGPPGVGKTLLAKAVAGE 474 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~e 474 (795)
++|+|++|+|||||++.+++.
T Consensus 6 v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 6 IALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 799999999999999999874
No 380
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=93.43 E-value=0.037 Score=55.30 Aligned_cols=28 Identities=29% Similarity=0.401 Sum_probs=26.2
Q ss_pred eEEECCCCCchhHHHHHhhhhccccEEE
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEAGVNFFS 481 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el~~~~~~ 481 (795)
|.|.|++|+||||+++.||..+|.+++.
T Consensus 9 I~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 9 IAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp EEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred EEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 8899999999999999999999998873
No 381
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=93.42 E-value=0.024 Score=60.45 Aligned_cols=29 Identities=28% Similarity=0.515 Sum_probs=23.3
Q ss_pred eEEECCCCCchhHHHHHhhhhccccEEEee
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 483 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el~~~~~~is 483 (795)
+.|+||||+|||||+++|+ ...+..+.+.
T Consensus 168 ~~l~G~sG~GKSTLln~l~-~~~~~~G~i~ 196 (302)
T 2yv5_A 168 CILAGPSGVGKSSILSRLT-GEELRTQEVS 196 (302)
T ss_dssp EEEECSTTSSHHHHHHHHH-SCCCCCSCC-
T ss_pred EEEECCCCCCHHHHHHHHH-HhhCcccccc
Confidence 7899999999999999999 7665544443
No 382
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=93.40 E-value=0.032 Score=60.25 Aligned_cols=28 Identities=32% Similarity=0.424 Sum_probs=21.9
Q ss_pred cccCCc-eEEECCCCCchhHHHHHhhhhc
Q 003795 448 VRIPGG-ILLCGPPGVGKTLLAKAVAGEA 475 (795)
Q Consensus 448 l~i~~g-iLL~GPpGtGKTtLakaLA~el 475 (795)
+....| .+|+||||+|||+++.+|.-.+
T Consensus 19 i~f~~~~~~i~G~NGsGKS~lleAi~~~l 47 (339)
T 3qkt_A 19 VEFKEGINLIIGQNGSGKSSLLDAILVGL 47 (339)
T ss_dssp EECCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EcCCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 344445 7899999999999999986533
No 383
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=93.35 E-value=0.12 Score=58.91 Aligned_cols=34 Identities=29% Similarity=0.264 Sum_probs=25.4
Q ss_pred CCceEEECCCCCchhHHHHHhhhhc---cccEEEeec
Q 003795 451 PGGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISA 484 (795)
Q Consensus 451 ~~giLL~GPpGtGKTtLakaLA~el---~~~~~~is~ 484 (795)
+..|+|+|++|+||||++..||..+ +.....+++
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 3448999999999999999999654 444555554
No 384
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=93.35 E-value=0.035 Score=53.67 Aligned_cols=21 Identities=29% Similarity=0.553 Sum_probs=19.7
Q ss_pred eEEECCCCCchhHHHHHhhhh
Q 003795 454 ILLCGPPGVGKTLLAKAVAGE 474 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~e 474 (795)
++|+|++|+|||||++.+++.
T Consensus 5 v~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 5 LMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEESCTTSSHHHHHHHHTCC
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 799999999999999999984
No 385
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=93.32 E-value=0.06 Score=64.79 Aligned_cols=21 Identities=24% Similarity=0.284 Sum_probs=18.3
Q ss_pred eEEECCCCCchhHHHHHhhhh
Q 003795 454 ILLCGPPGVGKTLLAKAVAGE 474 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~e 474 (795)
++++||+|+|||+++..++..
T Consensus 112 vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 112 MVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999988777654
No 386
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=93.30 E-value=0.14 Score=57.35 Aligned_cols=36 Identities=25% Similarity=0.329 Sum_probs=27.2
Q ss_pred CCceEEECCCCCchhHHHHHhhhhc----cccEEEeeccc
Q 003795 451 PGGILLCGPPGVGKTLLAKAVAGEA----GVNFFSISASQ 486 (795)
Q Consensus 451 ~~giLL~GPpGtGKTtLakaLA~el----~~~~~~is~se 486 (795)
|+.|+++|++|+||||++-.||..+ |..+.-+++..
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~ 139 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADV 139 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCC
Confidence 4458899999999999999988644 55566666554
No 387
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=93.27 E-value=0.04 Score=53.97 Aligned_cols=24 Identities=25% Similarity=0.216 Sum_probs=21.3
Q ss_pred CceEEECCCCCchhHHHHHhhhhc
Q 003795 452 GGILLCGPPGVGKTLLAKAVAGEA 475 (795)
Q Consensus 452 ~giLL~GPpGtGKTtLakaLA~el 475 (795)
.-++|.|++|+|||||++.|++.+
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhc
Confidence 348999999999999999999865
No 388
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=93.26 E-value=0.31 Score=58.50 Aligned_cols=34 Identities=21% Similarity=0.165 Sum_probs=25.8
Q ss_pred ccccccCcccCCceEEECCCCCchhHHHHHhhhhc
Q 003795 441 EMYRRRGVRIPGGILLCGPPGVGKTLLAKAVAGEA 475 (795)
Q Consensus 441 ~~~~~~gl~i~~giLL~GPpGtGKTtLakaLA~el 475 (795)
....++++. ..-++|+||||+|||||+|.|++..
T Consensus 567 ~vl~disl~-g~i~~I~GpNGsGKSTlLr~iagl~ 600 (765)
T 1ewq_A 567 FVPNDLEMA-HELVLITGPNMAGKSTFLRQTALIA 600 (765)
T ss_dssp CCCEEEEES-SCEEEEESCSSSSHHHHHHHHHHHH
T ss_pred eEeeeccCC-CcEEEEECCCCCChHHHHHHHHhhh
Confidence 344555555 3338999999999999999999853
No 389
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=93.11 E-value=0.028 Score=66.55 Aligned_cols=31 Identities=32% Similarity=0.541 Sum_probs=27.1
Q ss_pred cccccCcccCCc--eEEECCCCCchhHHHHHhh
Q 003795 442 MYRRRGVRIPGG--ILLCGPPGVGKTLLAKAVA 472 (795)
Q Consensus 442 ~~~~~gl~i~~g--iLL~GPpGtGKTtLakaLA 472 (795)
.++++++.++.| +.|+||||+|||||+++|.
T Consensus 337 ~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 337 NLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp TCCSEEEEEETTSEEEEECSTTSSHHHHHTTTH
T ss_pred ccccceeEecCCCEEEEEeeCCCCHHHHHHHHH
Confidence 467788888888 8899999999999998765
No 390
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.00 E-value=0.043 Score=58.80 Aligned_cols=29 Identities=21% Similarity=0.298 Sum_probs=23.3
Q ss_pred CcccCCc-eEEECCCCCchhHHHHHhhhhc
Q 003795 447 GVRIPGG-ILLCGPPGVGKTLLAKAVAGEA 475 (795)
Q Consensus 447 gl~i~~g-iLL~GPpGtGKTtLakaLA~el 475 (795)
.+.+..| .+|+||||+|||+|+++|...+
T Consensus 19 ~l~~~~g~~~i~G~NGsGKS~ll~ai~~ll 48 (322)
T 1e69_A 19 LIGFSDRVTAIVGPNGSGKSNIIDAIKWVF 48 (322)
T ss_dssp EEECCSSEEEEECCTTTCSTHHHHHHHHTS
T ss_pred EEecCCCcEEEECCCCCcHHHHHHHHHHHh
Confidence 3455445 7899999999999999998654
No 391
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=93.00 E-value=0.042 Score=60.98 Aligned_cols=29 Identities=28% Similarity=0.446 Sum_probs=25.1
Q ss_pred eEEECCCCCchhHHHHHhhhhccccEEEe
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEAGVNFFSI 482 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el~~~~~~i 482 (795)
|+|.||+|+|||+|+..||..++..++..
T Consensus 5 i~i~GptgsGKttla~~La~~~~~~iis~ 33 (409)
T 3eph_A 5 IVIAGTTGVGKSQLSIQLAQKFNGEVINS 33 (409)
T ss_dssp EEEEECSSSSHHHHHHHHHHHHTEEEEEC
T ss_pred EEEECcchhhHHHHHHHHHHHCCCeEeec
Confidence 78999999999999999999988665443
No 392
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=92.99 E-value=0.044 Score=52.67 Aligned_cols=21 Identities=48% Similarity=0.779 Sum_probs=19.8
Q ss_pred eEEECCCCCchhHHHHHhhhh
Q 003795 454 ILLCGPPGVGKTLLAKAVAGE 474 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~e 474 (795)
++|+|++|+|||||++.+++.
T Consensus 10 i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 10 IALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEECSTTSSHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 899999999999999999984
No 393
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=92.91 E-value=0.026 Score=60.47 Aligned_cols=22 Identities=41% Similarity=0.539 Sum_probs=20.4
Q ss_pred eEEECCCCCchhHHHHHhhhhc
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEA 475 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el 475 (795)
++|+|++|+|||||++.|++..
T Consensus 7 ~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 7 TLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEESSSSSCHHHHHHHHHSC
T ss_pred EEEEecCCCCHHHHHHHHHhhc
Confidence 7899999999999999999865
No 394
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=92.78 E-value=0.067 Score=52.83 Aligned_cols=32 Identities=34% Similarity=0.483 Sum_probs=27.3
Q ss_pred eEEECCCCCchhHHHHHhhhhccccEEEeeccc
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQ 486 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el~~~~~~is~se 486 (795)
++++|++|+|||++|..++.. +.+.+++..+.
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~ 33 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQ 33 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCC
Confidence 689999999999999999987 77777776654
No 395
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=92.73 E-value=0.068 Score=57.49 Aligned_cols=31 Identities=26% Similarity=0.227 Sum_probs=24.4
Q ss_pred ccCcccCCc--eEEECCCCCchhHHHHHhhhhc
Q 003795 445 RRGVRIPGG--ILLCGPPGVGKTLLAKAVAGEA 475 (795)
Q Consensus 445 ~~gl~i~~g--iLL~GPpGtGKTtLakaLA~el 475 (795)
.+.+....+ ++|+||+|+||||++..||+.+
T Consensus 97 ~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l 129 (320)
T 1zu4_A 97 RIDFKENRLNIFMLVGVNGTGKTTSLAKMANYY 129 (320)
T ss_dssp CCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CccccCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 344444433 8899999999999999999865
No 396
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=92.62 E-value=0.034 Score=64.31 Aligned_cols=24 Identities=33% Similarity=0.529 Sum_probs=22.3
Q ss_pred eEEECCCCCchhHHHHHhhhhccc
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEAGV 477 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el~~ 477 (795)
+.|+|+||+|||||+++|++.+++
T Consensus 372 I~LiG~sGSGKSTLar~La~~L~~ 395 (552)
T 3cr8_A 372 VFFTGLSGAGKSTLARALAARLME 395 (552)
T ss_dssp EEEEESSCHHHHHHHHHHHHHHHT
T ss_pred EEEECCCCChHHHHHHHHHHhhcc
Confidence 889999999999999999998864
No 397
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=92.60 E-value=0.054 Score=56.02 Aligned_cols=23 Identities=17% Similarity=0.216 Sum_probs=21.6
Q ss_pred eEEECCCCCchhHHHHHhhhhcc
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEAG 476 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el~ 476 (795)
|+|.|++|+||||+++.|+..+.
T Consensus 27 I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 27 ISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp EEEECSTTSSHHHHHTTTGGGCT
T ss_pred EEEECCCCCCHHHHHHHHHHhcC
Confidence 88999999999999999999883
No 398
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=92.42 E-value=0.06 Score=49.99 Aligned_cols=21 Identities=29% Similarity=0.582 Sum_probs=19.6
Q ss_pred eEEECCCCCchhHHHHHhhhh
Q 003795 454 ILLCGPPGVGKTLLAKAVAGE 474 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~e 474 (795)
++++|++|+|||+|++.+.+.
T Consensus 4 i~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 4 VVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEECCTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 799999999999999999875
No 399
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=92.34 E-value=0.041 Score=54.08 Aligned_cols=20 Identities=25% Similarity=0.408 Sum_probs=19.2
Q ss_pred eEEECCCCCchhHHHHHhhh
Q 003795 454 ILLCGPPGVGKTLLAKAVAG 473 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~ 473 (795)
|+++|++|+|||+|++.+.+
T Consensus 28 i~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 28 LVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp EEEEEETTSSHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 89999999999999999986
No 400
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=92.34 E-value=0.13 Score=55.88 Aligned_cols=22 Identities=32% Similarity=0.501 Sum_probs=20.2
Q ss_pred eEEECCCCCchhHHHHHhhhhc
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEA 475 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el 475 (795)
|+|+|+||+|||||+..|+..+
T Consensus 82 I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 82 VGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 8999999999999999998764
No 401
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=92.33 E-value=0.054 Score=52.78 Aligned_cols=20 Identities=30% Similarity=0.449 Sum_probs=19.3
Q ss_pred eEEECCCCCchhHHHHHhhh
Q 003795 454 ILLCGPPGVGKTLLAKAVAG 473 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~ 473 (795)
|+++|++|+|||+|++.+.+
T Consensus 26 i~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 26 LLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 89999999999999999987
No 402
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=92.33 E-value=0.062 Score=50.21 Aligned_cols=21 Identities=19% Similarity=0.377 Sum_probs=19.6
Q ss_pred eEEECCCCCchhHHHHHhhhh
Q 003795 454 ILLCGPPGVGKTLLAKAVAGE 474 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~e 474 (795)
|+++|++|+|||||++.+.+.
T Consensus 8 i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 8 MVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEECSTTSSHHHHHHHHHHC
T ss_pred EEEECcCCCCHHHHHHHHHcC
Confidence 899999999999999999874
No 403
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=92.30 E-value=0.062 Score=50.69 Aligned_cols=21 Identities=57% Similarity=0.899 Sum_probs=19.6
Q ss_pred eEEECCCCCchhHHHHHhhhh
Q 003795 454 ILLCGPPGVGKTLLAKAVAGE 474 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~e 474 (795)
|+|+|++|+|||+|++.+.+.
T Consensus 7 i~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 7 VVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEECCTTSSHHHHHHHHHCC
T ss_pred EEEECCCCccHHHHHHHHhcC
Confidence 899999999999999999874
No 404
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=92.29 E-value=0.055 Score=51.89 Aligned_cols=21 Identities=38% Similarity=0.768 Sum_probs=19.8
Q ss_pred eEEECCCCCchhHHHHHhhhh
Q 003795 454 ILLCGPPGVGKTLLAKAVAGE 474 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~e 474 (795)
++|+|+||+|||||++.+++.
T Consensus 7 i~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 7 VVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEESTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 799999999999999999975
No 405
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=92.18 E-value=0.067 Score=49.70 Aligned_cols=21 Identities=29% Similarity=0.504 Sum_probs=19.3
Q ss_pred eEEECCCCCchhHHHHHhhhh
Q 003795 454 ILLCGPPGVGKTLLAKAVAGE 474 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~e 474 (795)
|+++|++|+|||||++.+.+.
T Consensus 6 i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 6 VVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 899999999999999999864
No 406
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=92.14 E-value=0.15 Score=50.69 Aligned_cols=68 Identities=18% Similarity=0.128 Sum_probs=37.5
Q ss_pred eEEECCCCCchhHHHHHhhhhc---cccEEEeeccc-------eehhhhccch-----hhHHhHHHHHHhcCCceeEhHH
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEA---GVNFFSISASQ-------FVEIYVGVGA-----SRVRSLYQEAKDNAPSVVFIDE 518 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el---~~~~~~is~se-------~~~~~~g~~~-----~~l~~lf~~ar~~~p~Il~IDE 518 (795)
.+++||.|+||||.+-.++... +..+..+...- .+....|... .....+++.+. ...++|+|||
T Consensus 11 ~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d~r~~~~~i~s~~g~~~~a~~~~~~~~i~~~~~-~~~dvViIDE 89 (191)
T 1xx6_A 11 EVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDNRYSKEDVVSHMGEKEQAVAIKNSREILKYFE-EDTEVIAIDE 89 (191)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-------CEEECTTSCEEECEEESSSTHHHHHCC-TTCSEEEECS
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCccchHHHHHhhcCCceeeEeeCCHHHHHHHHh-ccCCEEEEEC
Confidence 7889999999999887777654 44444332110 0000111110 11123444433 2467999999
Q ss_pred HHHH
Q 003795 519 LDAV 522 (795)
Q Consensus 519 ID~l 522 (795)
+..+
T Consensus 90 aqfl 93 (191)
T 1xx6_A 90 VQFF 93 (191)
T ss_dssp GGGS
T ss_pred CCCC
Confidence 8765
No 407
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=92.13 E-value=0.074 Score=62.30 Aligned_cols=32 Identities=25% Similarity=0.503 Sum_probs=28.6
Q ss_pred eEEECCCCCchhHHHHHhhhhc---cccEEEeecc
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEA---GVNFFSISAS 485 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el---~~~~~~is~s 485 (795)
|+|+|++|+||||++++|+..+ +.+++.++..
T Consensus 55 IvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD 89 (630)
T 1x6v_B 55 VWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGD 89 (630)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechH
Confidence 8999999999999999999988 8888887643
No 408
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=92.03 E-value=0.069 Score=51.56 Aligned_cols=23 Identities=30% Similarity=0.593 Sum_probs=20.8
Q ss_pred ceEEECCCCCchhHHHHHhhhhc
Q 003795 453 GILLCGPPGVGKTLLAKAVAGEA 475 (795)
Q Consensus 453 giLL~GPpGtGKTtLakaLA~el 475 (795)
.|+++|++|+|||||++.+.+..
T Consensus 50 ~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 50 SIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999998854
No 409
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=92.00 E-value=0.073 Score=49.83 Aligned_cols=21 Identities=29% Similarity=0.431 Sum_probs=19.4
Q ss_pred eEEECCCCCchhHHHHHhhhh
Q 003795 454 ILLCGPPGVGKTLLAKAVAGE 474 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~e 474 (795)
|+++|++|+|||||++.+.+.
T Consensus 6 i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 6 VAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEECCTTSSHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 799999999999999999873
No 410
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=91.99 E-value=0.069 Score=52.15 Aligned_cols=31 Identities=23% Similarity=0.163 Sum_probs=24.2
Q ss_pred ceEEECCCCCchhHHHHHhhhhc---cccEEEee
Q 003795 453 GILLCGPPGVGKTLLAKAVAGEA---GVNFFSIS 483 (795)
Q Consensus 453 giLL~GPpGtGKTtLakaLA~el---~~~~~~is 483 (795)
-+.|.|++|+|||||+..|+..+ +..+..+.
T Consensus 6 ~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik 39 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK 39 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEE
Confidence 37899999999999999999865 34444444
No 411
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=91.98 E-value=0.059 Score=50.45 Aligned_cols=21 Identities=52% Similarity=0.917 Sum_probs=19.4
Q ss_pred eEEECCCCCchhHHHHHhhhh
Q 003795 454 ILLCGPPGVGKTLLAKAVAGE 474 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~e 474 (795)
|+|+|++|+|||+|++.+.+.
T Consensus 5 i~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 5 VLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEESTTSSHHHHHHHHCCC
T ss_pred EEEECCCCCCHHHHHHHHcCc
Confidence 799999999999999999864
No 412
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=91.95 E-value=0.073 Score=49.50 Aligned_cols=21 Identities=29% Similarity=0.550 Sum_probs=19.5
Q ss_pred eEEECCCCCchhHHHHHhhhh
Q 003795 454 ILLCGPPGVGKTLLAKAVAGE 474 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~e 474 (795)
|+++|++|+|||||++.+.+.
T Consensus 7 i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 7 VIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 899999999999999999864
No 413
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=91.92 E-value=0.075 Score=49.74 Aligned_cols=22 Identities=27% Similarity=0.463 Sum_probs=20.1
Q ss_pred eEEECCCCCchhHHHHHhhhhc
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEA 475 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el 475 (795)
|+++|++|+|||+|++.+.+..
T Consensus 9 i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 9 VCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHHcCC
Confidence 8999999999999999998753
No 414
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=91.90 E-value=0.066 Score=49.60 Aligned_cols=21 Identities=29% Similarity=0.556 Sum_probs=19.5
Q ss_pred eEEECCCCCchhHHHHHhhhh
Q 003795 454 ILLCGPPGVGKTLLAKAVAGE 474 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~e 474 (795)
|+++|++|+|||||++.+.+.
T Consensus 6 i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 6 LVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 799999999999999999864
No 415
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=91.89 E-value=0.076 Score=60.93 Aligned_cols=33 Identities=21% Similarity=0.305 Sum_probs=25.9
Q ss_pred eEEECCCCCchhHHHHHhhhhccc---cEEEeeccc
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEAGV---NFFSISASQ 486 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el~~---~~~~is~se 486 (795)
|+|+|.||+||||+++.|+..++. +...++.++
T Consensus 38 IvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~ 73 (520)
T 2axn_A 38 IVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGE 73 (520)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccH
Confidence 889999999999999999988743 334455444
No 416
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.87 E-value=0.075 Score=49.62 Aligned_cols=21 Identities=24% Similarity=0.450 Sum_probs=19.3
Q ss_pred eEEECCCCCchhHHHHHhhhh
Q 003795 454 ILLCGPPGVGKTLLAKAVAGE 474 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~e 474 (795)
|+++|++|+|||+|++.+.+.
T Consensus 6 i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 6 LVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 899999999999999999864
No 417
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=91.85 E-value=0.073 Score=49.92 Aligned_cols=21 Identities=43% Similarity=0.741 Sum_probs=19.2
Q ss_pred eEEECCCCCchhHHHHHhhhh
Q 003795 454 ILLCGPPGVGKTLLAKAVAGE 474 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~e 474 (795)
|+++|++|+|||+|++.+.+.
T Consensus 5 i~ivG~~~~GKSsli~~l~~~ 25 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFGGL 25 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 799999999999999999753
No 418
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=91.82 E-value=0.094 Score=49.64 Aligned_cols=21 Identities=29% Similarity=0.374 Sum_probs=19.5
Q ss_pred eEEECCCCCchhHHHHHhhhh
Q 003795 454 ILLCGPPGVGKTLLAKAVAGE 474 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~e 474 (795)
|+++|++|+|||+|++.+.+.
T Consensus 11 i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 11 VTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp EEEESCTTTTHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 899999999999999999863
No 419
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=91.81 E-value=0.33 Score=42.16 Aligned_cols=62 Identities=16% Similarity=0.216 Sum_probs=52.9
Q ss_pred HHHhHHHHhhhhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003795 244 KRQRKEELEKMREESEMMEKAMDMQKKEEERRR---KKEIRLQKYEESLQDARDNYRYMANVWEN 305 (795)
Q Consensus 244 ~~~~k~eld~~~~~~~~le~e~~~l~~e~~~~~---~~~~rl~~l~~el~~l~~~~~~l~~~w~~ 305 (795)
+...+.+++.++.+|..|+.++..|+.....-. ....++..+..+++.++.++..+..+|..
T Consensus 17 SykeqrEle~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~erWee 81 (89)
T 2lw1_A 17 SYKLQRELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFERWEY 81 (89)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677899999999999999999998885432 34468999999999999999999999975
No 420
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=91.78 E-value=0.063 Score=58.68 Aligned_cols=30 Identities=23% Similarity=0.362 Sum_probs=23.6
Q ss_pred cccCcccCCc-eEEECCCCCchhHHHHHhhh
Q 003795 444 RRRGVRIPGG-ILLCGPPGVGKTLLAKAVAG 473 (795)
Q Consensus 444 ~~~gl~i~~g-iLL~GPpGtGKTtLakaLA~ 473 (795)
....+.+..| .+|+||||+|||+++.||.-
T Consensus 17 ~~~~i~f~~gl~vi~G~NGaGKT~ileAI~~ 47 (371)
T 3auy_A 17 VNSRIKFEKGIVAIIGENGSGKSSIFEAVFF 47 (371)
T ss_dssp EEEEEECCSEEEEEEECTTSSHHHHHHHHHH
T ss_pred cceEEecCCCeEEEECCCCCCHHHHHHHHHH
Confidence 3344555556 88999999999999999974
No 421
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=91.75 E-value=0.079 Score=50.09 Aligned_cols=21 Identities=33% Similarity=0.544 Sum_probs=19.5
Q ss_pred eEEECCCCCchhHHHHHhhhh
Q 003795 454 ILLCGPPGVGKTLLAKAVAGE 474 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~e 474 (795)
|+++|++|+|||||++.+.+.
T Consensus 10 i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 10 VILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 899999999999999999864
No 422
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=91.72 E-value=0.081 Score=49.60 Aligned_cols=21 Identities=33% Similarity=0.389 Sum_probs=19.6
Q ss_pred eEEECCCCCchhHHHHHhhhh
Q 003795 454 ILLCGPPGVGKTLLAKAVAGE 474 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~e 474 (795)
|+++|++|+|||||++.+.+.
T Consensus 9 i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 9 VVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEECCTTSCHHHHHHHHHHC
T ss_pred EEEECcCCCCHHHHHHHHHcC
Confidence 899999999999999999864
No 423
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=91.72 E-value=0.074 Score=50.31 Aligned_cols=21 Identities=38% Similarity=0.597 Sum_probs=19.6
Q ss_pred eEEECCCCCchhHHHHHhhhh
Q 003795 454 ILLCGPPGVGKTLLAKAVAGE 474 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~e 474 (795)
|+++|++|+|||+|++.+.+.
T Consensus 12 i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 12 LLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEECCTTSCHHHHHHHHCSC
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 899999999999999999864
No 424
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=91.71 E-value=0.093 Score=59.69 Aligned_cols=32 Identities=13% Similarity=0.060 Sum_probs=24.9
Q ss_pred eEEECCCCCchhHHHHHhhhhc----cccEEEeecc
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEA----GVNFFSISAS 485 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el----~~~~~~is~s 485 (795)
++|.|+||+|||+|+-.+|... +.+++.++..
T Consensus 245 ~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E 280 (503)
T 1q57_A 245 IMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLE 280 (503)
T ss_dssp EEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESS
T ss_pred EEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEecc
Confidence 8899999999999998887643 4456666543
No 425
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=91.62 E-value=0.082 Score=58.92 Aligned_cols=25 Identities=32% Similarity=0.500 Sum_probs=22.2
Q ss_pred eEEECCCCCchhHHHHHhhhhcccc
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEAGVN 478 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el~~~ 478 (795)
.+|+||||+|||||+++|+..++..
T Consensus 29 ~~i~G~nG~GKstll~ai~~~~~~~ 53 (430)
T 1w1w_A 29 TSIIGPNGSGKSNMMDAISFVLGVR 53 (430)
T ss_dssp EEEECSTTSSHHHHHHHHHHHTTC-
T ss_pred EEEECCCCCCHHHHHHHHHhhhccc
Confidence 8899999999999999999977654
No 426
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=91.60 E-value=0.084 Score=49.97 Aligned_cols=21 Identities=33% Similarity=0.621 Sum_probs=19.5
Q ss_pred eEEECCCCCchhHHHHHhhhh
Q 003795 454 ILLCGPPGVGKTLLAKAVAGE 474 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~e 474 (795)
|+++|++|+|||||++.+.+.
T Consensus 11 i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 11 VIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 899999999999999999874
No 427
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=91.59 E-value=0.074 Score=49.75 Aligned_cols=21 Identities=43% Similarity=0.629 Sum_probs=19.4
Q ss_pred eEEECCCCCchhHHHHHhhhh
Q 003795 454 ILLCGPPGVGKTLLAKAVAGE 474 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~e 474 (795)
|+++|++|+|||+|++.+.+.
T Consensus 6 i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 6 ILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECcCCCCHHHHHHHHHhC
Confidence 799999999999999999864
No 428
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.58 E-value=0.081 Score=52.34 Aligned_cols=23 Identities=30% Similarity=0.593 Sum_probs=20.8
Q ss_pred ceEEECCCCCchhHHHHHhhhhc
Q 003795 453 GILLCGPPGVGKTLLAKAVAGEA 475 (795)
Q Consensus 453 giLL~GPpGtGKTtLakaLA~el 475 (795)
.|+|+|++|+|||+|++.+++..
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 38999999999999999999854
No 429
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=91.56 E-value=0.085 Score=49.17 Aligned_cols=21 Identities=29% Similarity=0.501 Sum_probs=19.4
Q ss_pred eEEECCCCCchhHHHHHhhhh
Q 003795 454 ILLCGPPGVGKTLLAKAVAGE 474 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~e 474 (795)
|+++|++|+|||+|++.+.+.
T Consensus 6 i~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 6 LVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEECSTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 799999999999999999863
No 430
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=91.56 E-value=0.12 Score=57.33 Aligned_cols=20 Identities=30% Similarity=0.514 Sum_probs=19.5
Q ss_pred eEEECCCCCchhHHHHHhhh
Q 003795 454 ILLCGPPGVGKTLLAKAVAG 473 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~ 473 (795)
+.|+|+||+|||||+++|++
T Consensus 23 vgiVG~pnaGKSTL~n~Ltg 42 (392)
T 1ni3_A 23 TGIVGMPNVGKSTFFRAITK 42 (392)
T ss_dssp EEEEECSSSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHC
Confidence 89999999999999999998
No 431
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=91.50 E-value=0.087 Score=49.17 Aligned_cols=20 Identities=30% Similarity=0.454 Sum_probs=19.1
Q ss_pred eEEECCCCCchhHHHHHhhh
Q 003795 454 ILLCGPPGVGKTLLAKAVAG 473 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~ 473 (795)
|+++|++|+|||+|++.+.+
T Consensus 9 i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 9 LVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 89999999999999999986
No 432
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=91.42 E-value=0.09 Score=53.56 Aligned_cols=28 Identities=29% Similarity=0.548 Sum_probs=25.8
Q ss_pred eEEECCCCCchhHHHHHhhhhccccEEE
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEAGVNFFS 481 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el~~~~~~ 481 (795)
|.|.|++||||||+++.||..++.+++.
T Consensus 17 I~i~g~~gsGk~~i~~~la~~lg~~~~d 44 (223)
T 3hdt_A 17 ITIEREYGSGGRIVGKKLAEELGIHFYD 44 (223)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred EEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence 8899999999999999999999988754
No 433
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=91.40 E-value=0.097 Score=49.52 Aligned_cols=21 Identities=38% Similarity=0.483 Sum_probs=19.4
Q ss_pred eEEECCCCCchhHHHHHhhhh
Q 003795 454 ILLCGPPGVGKTLLAKAVAGE 474 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~e 474 (795)
|+++|++|+|||+|++.+.+.
T Consensus 9 i~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 9 IVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHGG
T ss_pred EEEECcCCCCHHHHHHHHHhC
Confidence 899999999999999999864
No 434
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=91.31 E-value=0.092 Score=50.23 Aligned_cols=22 Identities=32% Similarity=0.377 Sum_probs=19.9
Q ss_pred ceEEECCCCCchhHHHHHhhhh
Q 003795 453 GILLCGPPGVGKTLLAKAVAGE 474 (795)
Q Consensus 453 giLL~GPpGtGKTtLakaLA~e 474 (795)
.|+|+|++|+|||+|++.+.+.
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3899999999999999999863
No 435
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=91.31 E-value=0.09 Score=58.65 Aligned_cols=30 Identities=27% Similarity=0.276 Sum_probs=24.6
Q ss_pred ccCcccCCc--eEEECCCCCchhHHHHHhhhh
Q 003795 445 RRGVRIPGG--ILLCGPPGVGKTLLAKAVAGE 474 (795)
Q Consensus 445 ~~gl~i~~g--iLL~GPpGtGKTtLakaLA~e 474 (795)
.+.+.+..+ +.|+|+||+|||||+++|++.
T Consensus 149 ~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~ 180 (416)
T 1udx_A 149 RLRLELMLIADVGLVGYPNAGKSSLLAAMTRA 180 (416)
T ss_dssp EEEEEECCSCSEEEECCGGGCHHHHHHHHCSS
T ss_pred eeeeEEcCCCEEEEECCCCCcHHHHHHHHHcC
Confidence 344555554 899999999999999999986
No 436
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=91.24 E-value=0.096 Score=48.84 Aligned_cols=21 Identities=29% Similarity=0.339 Sum_probs=19.2
Q ss_pred eEEECCCCCchhHHHHHhhhh
Q 003795 454 ILLCGPPGVGKTLLAKAVAGE 474 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~e 474 (795)
|+++|++|+|||+|++.+.+.
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999999763
No 437
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=91.23 E-value=0.096 Score=50.00 Aligned_cols=21 Identities=29% Similarity=0.570 Sum_probs=19.6
Q ss_pred eEEECCCCCchhHHHHHhhhh
Q 003795 454 ILLCGPPGVGKTLLAKAVAGE 474 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~e 474 (795)
|+|+|++|+|||||++.+.+.
T Consensus 7 i~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 7 LVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 899999999999999999864
No 438
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=91.22 E-value=0.096 Score=50.35 Aligned_cols=21 Identities=24% Similarity=0.436 Sum_probs=19.9
Q ss_pred eEEECCCCCchhHHHHHhhhh
Q 003795 454 ILLCGPPGVGKTLLAKAVAGE 474 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~e 474 (795)
|+++|++|+|||+|++.+.+.
T Consensus 10 i~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 10 TVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 899999999999999999875
No 439
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=91.22 E-value=0.093 Score=53.19 Aligned_cols=22 Identities=32% Similarity=0.641 Sum_probs=20.4
Q ss_pred eEEECCCCCchhHHHHHhhhhc
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEA 475 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el 475 (795)
|+|+|++|+|||||+++|.+..
T Consensus 32 i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 32 IVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp EEEECCTTSSHHHHHHHHHTSC
T ss_pred EEEECCCCCCHHHHHHHHcCCC
Confidence 8999999999999999999854
No 440
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=91.19 E-value=0.081 Score=54.96 Aligned_cols=23 Identities=39% Similarity=0.612 Sum_probs=20.6
Q ss_pred ceEEECCCCCchhHHHHHhhhhc
Q 003795 453 GILLCGPPGVGKTLLAKAVAGEA 475 (795)
Q Consensus 453 giLL~GPpGtGKTtLakaLA~el 475 (795)
.|+|+|+||+|||||+++|.+..
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 38999999999999999999853
No 441
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=91.14 E-value=0.16 Score=49.88 Aligned_cols=22 Identities=41% Similarity=0.726 Sum_probs=18.3
Q ss_pred ceEEECCCCCchhHHHHHhhhh
Q 003795 453 GILLCGPPGVGKTLLAKAVAGE 474 (795)
Q Consensus 453 giLL~GPpGtGKTtLakaLA~e 474 (795)
.+++.+|+|+|||.++-.++..
T Consensus 50 ~~li~~~tGsGKT~~~~~~~~~ 71 (216)
T 3b6e_A 50 NIIICLPTGSGKTRVAVYIAKD 71 (216)
T ss_dssp CEEEECSCHHHHHHHHHHHHHH
T ss_pred CEEEEcCCCCCHHHHHHHHHHH
Confidence 4899999999999988766653
No 442
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=91.13 E-value=0.091 Score=57.09 Aligned_cols=22 Identities=32% Similarity=0.573 Sum_probs=20.4
Q ss_pred eEEECCCCCchhHHHHHhhhhc
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEA 475 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el 475 (795)
+.|+|+||+|||||+++|++.+
T Consensus 77 v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 77 VGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 8999999999999999999854
No 443
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=91.07 E-value=0.1 Score=50.50 Aligned_cols=21 Identities=38% Similarity=0.580 Sum_probs=19.6
Q ss_pred eEEECCCCCchhHHHHHhhhh
Q 003795 454 ILLCGPPGVGKTLLAKAVAGE 474 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~e 474 (795)
|+|+|++|+|||+|++.+.+.
T Consensus 28 i~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 28 VVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHhcC
Confidence 899999999999999999874
No 444
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=91.05 E-value=0.091 Score=49.67 Aligned_cols=21 Identities=29% Similarity=0.488 Sum_probs=19.7
Q ss_pred eEEECCCCCchhHHHHHhhhh
Q 003795 454 ILLCGPPGVGKTLLAKAVAGE 474 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~e 474 (795)
|+++|++|+|||+|++.+.+.
T Consensus 12 i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 12 LVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEECTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 899999999999999999875
No 445
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=91.04 E-value=0.1 Score=49.23 Aligned_cols=21 Identities=29% Similarity=0.499 Sum_probs=19.6
Q ss_pred eEEECCCCCchhHHHHHhhhh
Q 003795 454 ILLCGPPGVGKTLLAKAVAGE 474 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~e 474 (795)
|+++|++|+|||||++.+.+.
T Consensus 18 i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 18 YIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 899999999999999999864
No 446
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=91.02 E-value=0.1 Score=48.89 Aligned_cols=22 Identities=32% Similarity=0.395 Sum_probs=19.7
Q ss_pred ceEEECCCCCchhHHHHHhhhh
Q 003795 453 GILLCGPPGVGKTLLAKAVAGE 474 (795)
Q Consensus 453 giLL~GPpGtGKTtLakaLA~e 474 (795)
.|+++|++|+|||+|++.+.+.
T Consensus 9 ~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3899999999999999999763
No 447
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=90.92 E-value=0.1 Score=50.13 Aligned_cols=21 Identities=29% Similarity=0.556 Sum_probs=19.7
Q ss_pred eEEECCCCCchhHHHHHhhhh
Q 003795 454 ILLCGPPGVGKTLLAKAVAGE 474 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~e 474 (795)
|+++|++|+|||||++.+++.
T Consensus 24 i~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 24 LVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHHcC
Confidence 899999999999999999874
No 448
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=90.90 E-value=0.095 Score=49.45 Aligned_cols=21 Identities=29% Similarity=0.411 Sum_probs=19.4
Q ss_pred eEEECCCCCchhHHHHHhhhh
Q 003795 454 ILLCGPPGVGKTLLAKAVAGE 474 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~e 474 (795)
|+++|++|+|||+|++.+.+.
T Consensus 17 i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 17 LVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 899999999999999999863
No 449
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=90.87 E-value=0.11 Score=49.92 Aligned_cols=22 Identities=32% Similarity=0.327 Sum_probs=20.1
Q ss_pred eEEECCCCCchhHHHHHhhhhc
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEA 475 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el 475 (795)
|+|+|++|+|||+|++.+.+..
T Consensus 17 i~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 17 IVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEECSTTSSHHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHHhhc
Confidence 8999999999999999998754
No 450
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=90.86 E-value=0.089 Score=50.78 Aligned_cols=22 Identities=27% Similarity=0.463 Sum_probs=20.2
Q ss_pred ceEEECCCCCchhHHHHHhhhh
Q 003795 453 GILLCGPPGVGKTLLAKAVAGE 474 (795)
Q Consensus 453 giLL~GPpGtGKTtLakaLA~e 474 (795)
.|+++|++|+|||||++.+.+.
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 25 EIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3899999999999999999875
No 451
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=90.85 E-value=0.23 Score=55.70 Aligned_cols=21 Identities=33% Similarity=0.396 Sum_probs=18.7
Q ss_pred eEEECCCCCchhHHHHHhhhh
Q 003795 454 ILLCGPPGVGKTLLAKAVAGE 474 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~e 474 (795)
.++.|+||+|||+++..++..
T Consensus 164 ~~I~G~aGsGKTt~I~~~~~~ 184 (446)
T 3vkw_A 164 VLVDGVPGCGKTKEILSRVNF 184 (446)
T ss_dssp EEEEECTTSCHHHHHHHHCCT
T ss_pred EEEEcCCCCCHHHHHHHHhcc
Confidence 789999999999999888753
No 452
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=90.79 E-value=0.09 Score=50.66 Aligned_cols=21 Identities=52% Similarity=0.629 Sum_probs=19.9
Q ss_pred eEEECCCCCchhHHHHHhhhh
Q 003795 454 ILLCGPPGVGKTLLAKAVAGE 474 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~e 474 (795)
++++|++|+|||+|++.+.+.
T Consensus 19 i~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 19 ILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEESTTSSHHHHHHHHCCS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 899999999999999999875
No 453
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=90.78 E-value=0.094 Score=59.25 Aligned_cols=22 Identities=41% Similarity=0.555 Sum_probs=20.0
Q ss_pred eEEECCCCCchhHHHHHhhhhc
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEA 475 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el 475 (795)
++|+||+|+|||+|++.|+...
T Consensus 154 ~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 154 IGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp EEEECCSSSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCccHHHHHHHhhh
Confidence 7999999999999999998754
No 454
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=90.78 E-value=0.11 Score=49.21 Aligned_cols=21 Identities=29% Similarity=0.482 Sum_probs=19.5
Q ss_pred eEEECCCCCchhHHHHHhhhh
Q 003795 454 ILLCGPPGVGKTLLAKAVAGE 474 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~e 474 (795)
|+++|++|+|||+|++.+.+.
T Consensus 15 i~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 15 LVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEECCTTSCHHHHHHHHHHC
T ss_pred EEEECcCCCCHHHHHHHHHcC
Confidence 899999999999999999864
No 455
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=90.77 E-value=0.11 Score=49.35 Aligned_cols=21 Identities=29% Similarity=0.550 Sum_probs=19.6
Q ss_pred eEEECCCCCchhHHHHHhhhh
Q 003795 454 ILLCGPPGVGKTLLAKAVAGE 474 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~e 474 (795)
|+|+|++|+|||+|++.+.+.
T Consensus 21 i~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 21 VIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhhC
Confidence 899999999999999999863
No 456
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=90.77 E-value=0.09 Score=50.33 Aligned_cols=21 Identities=33% Similarity=0.634 Sum_probs=19.5
Q ss_pred eEEECCCCCchhHHHHHhhhh
Q 003795 454 ILLCGPPGVGKTLLAKAVAGE 474 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~e 474 (795)
|+++|++|+|||+|++.+.+.
T Consensus 4 i~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 4 IIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhCc
Confidence 799999999999999999874
No 457
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=90.75 E-value=0.14 Score=56.64 Aligned_cols=28 Identities=36% Similarity=0.550 Sum_probs=23.4
Q ss_pred cccCCc--eEEECCCCCchhHHHHHhhhhc
Q 003795 448 VRIPGG--ILLCGPPGVGKTLLAKAVAGEA 475 (795)
Q Consensus 448 l~i~~g--iLL~GPpGtGKTtLakaLA~el 475 (795)
+.+.+| ++|+||+|+|||+|++.|++..
T Consensus 169 ~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 169 SPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp SCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred eeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 444555 9999999999999999999854
No 458
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=90.74 E-value=0.093 Score=51.57 Aligned_cols=23 Identities=30% Similarity=0.549 Sum_probs=20.6
Q ss_pred CceEEECCCCCchhHHHHHhhhh
Q 003795 452 GGILLCGPPGVGKTLLAKAVAGE 474 (795)
Q Consensus 452 ~giLL~GPpGtGKTtLakaLA~e 474 (795)
.|++|.|++|+||||++..+...
T Consensus 17 ~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHc
Confidence 35999999999999999999874
No 459
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=90.70 E-value=0.12 Score=52.26 Aligned_cols=29 Identities=34% Similarity=0.439 Sum_probs=25.3
Q ss_pred eEEECCCCCchhHHHHHhhhhccccEEEee
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEAGVNFFSIS 483 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el~~~~~~is 483 (795)
|.|+|..||||||+++.++. +|.+++..+
T Consensus 12 iglTGgigsGKStv~~~l~~-~g~~vidaD 40 (210)
T 4i1u_A 12 IGLTGGIGSGKTTVADLFAA-RGASLVDTD 40 (210)
T ss_dssp EEEECCTTSCHHHHHHHHHH-TTCEEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHH-CCCcEEECc
Confidence 89999999999999999998 888776543
No 460
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=90.66 E-value=0.14 Score=57.42 Aligned_cols=34 Identities=38% Similarity=0.379 Sum_probs=26.5
Q ss_pred CceEEECCCCCchhHHHHHhhhhc---cccEEEeecc
Q 003795 452 GGILLCGPPGVGKTLLAKAVAGEA---GVNFFSISAS 485 (795)
Q Consensus 452 ~giLL~GPpGtGKTtLakaLA~el---~~~~~~is~s 485 (795)
..|+|+|++|+||||++..||+.+ +..+..+++.
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D 136 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAAD 136 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Confidence 459999999999999999999865 3445555544
No 461
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=90.57 E-value=0.12 Score=48.99 Aligned_cols=21 Identities=38% Similarity=0.580 Sum_probs=19.5
Q ss_pred eEEECCCCCchhHHHHHhhhh
Q 003795 454 ILLCGPPGVGKTLLAKAVAGE 474 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~e 474 (795)
|+|+|++|+|||+|++.+.+.
T Consensus 13 i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 13 VMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHHhC
Confidence 899999999999999999864
No 462
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=90.55 E-value=0.11 Score=50.08 Aligned_cols=21 Identities=33% Similarity=0.502 Sum_probs=19.6
Q ss_pred eEEECCCCCchhHHHHHhhhh
Q 003795 454 ILLCGPPGVGKTLLAKAVAGE 474 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~e 474 (795)
|+++|++|+|||+|++.+.+.
T Consensus 10 i~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 10 IVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 899999999999999999874
No 463
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=90.55 E-value=0.68 Score=45.09 Aligned_cols=15 Identities=33% Similarity=0.452 Sum_probs=13.5
Q ss_pred ceEEECCCCCchhHH
Q 003795 453 GILLCGPPGVGKTLL 467 (795)
Q Consensus 453 giLL~GPpGtGKTtL 467 (795)
.+++.+|+|+|||..
T Consensus 40 ~~li~~~TGsGKT~~ 54 (207)
T 2gxq_A 40 DLIGQARTGTGKTLA 54 (207)
T ss_dssp CEEEECCTTSCHHHH
T ss_pred CEEEECCCCChHHHH
Confidence 489999999999975
No 464
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=90.48 E-value=0.11 Score=49.67 Aligned_cols=21 Identities=29% Similarity=0.493 Sum_probs=19.4
Q ss_pred eEEECCCCCchhHHHHHhhhh
Q 003795 454 ILLCGPPGVGKTLLAKAVAGE 474 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~e 474 (795)
|+|+|++|+|||+|++.+.+.
T Consensus 13 i~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 13 FLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 899999999999999999864
No 465
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.45 E-value=0.085 Score=50.26 Aligned_cols=21 Identities=33% Similarity=0.407 Sum_probs=19.4
Q ss_pred ceEEECCCCCchhHHHHHhhh
Q 003795 453 GILLCGPPGVGKTLLAKAVAG 473 (795)
Q Consensus 453 giLL~GPpGtGKTtLakaLA~ 473 (795)
.|+++|++|+|||||++.+.+
T Consensus 20 ~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 20 RILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp EEEEEEETTSSHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 389999999999999999985
No 466
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=90.44 E-value=0.1 Score=50.07 Aligned_cols=21 Identities=29% Similarity=0.466 Sum_probs=19.8
Q ss_pred eEEECCCCCchhHHHHHhhhh
Q 003795 454 ILLCGPPGVGKTLLAKAVAGE 474 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~e 474 (795)
|+++|++|+|||||++.+.+.
T Consensus 26 i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 26 VAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp EEEEEBTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 899999999999999999875
No 467
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=90.44 E-value=0.3 Score=57.39 Aligned_cols=31 Identities=26% Similarity=0.590 Sum_probs=19.3
Q ss_pred eEEECCCCCchhHHH-HHhhhhc--cccEEEeec
Q 003795 454 ILLCGPPGVGKTLLA-KAVAGEA--GVNFFSISA 484 (795)
Q Consensus 454 iLL~GPpGtGKTtLa-kaLA~el--~~~~~~is~ 484 (795)
.+|.||||||||+++ .+|+..+ +..+..+..
T Consensus 208 ~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~ 241 (646)
T 4b3f_X 208 AIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAP 241 (646)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcC
Confidence 689999999999754 4443322 344444433
No 468
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=90.41 E-value=0.11 Score=52.83 Aligned_cols=23 Identities=22% Similarity=0.277 Sum_probs=21.6
Q ss_pred eEEECCCCCchhHHHHHhhhhcc
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEAG 476 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el~ 476 (795)
|+|.|++|+||||+++.|+..++
T Consensus 5 i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 5 LSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEECTTSSHHHHHHHHHHHCT
T ss_pred EEEEcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999884
No 469
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=90.35 E-value=0.11 Score=50.79 Aligned_cols=20 Identities=45% Similarity=0.825 Sum_probs=18.9
Q ss_pred eEEECCCCCchhHHHHHhhh
Q 003795 454 ILLCGPPGVGKTLLAKAVAG 473 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~ 473 (795)
|+|+|++|+|||+|++.+++
T Consensus 26 i~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 26 VMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp EEEECSTTSSHHHHHHHTCC
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 89999999999999999975
No 470
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=90.34 E-value=0.13 Score=49.09 Aligned_cols=21 Identities=29% Similarity=0.494 Sum_probs=19.5
Q ss_pred eEEECCCCCchhHHHHHhhhh
Q 003795 454 ILLCGPPGVGKTLLAKAVAGE 474 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~e 474 (795)
|+|+|++|+|||+|++.+.+.
T Consensus 21 i~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 21 LVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 899999999999999999864
No 471
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=90.33 E-value=0.13 Score=48.96 Aligned_cols=21 Identities=29% Similarity=0.360 Sum_probs=19.3
Q ss_pred eEEECCCCCchhHHHHHhhhh
Q 003795 454 ILLCGPPGVGKTLLAKAVAGE 474 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~e 474 (795)
|+++|++|+|||+|++.+.+.
T Consensus 8 i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 8 CVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 899999999999999999863
No 472
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=90.32 E-value=0.13 Score=49.64 Aligned_cols=21 Identities=38% Similarity=0.490 Sum_probs=19.6
Q ss_pred eEEECCCCCchhHHHHHhhhh
Q 003795 454 ILLCGPPGVGKTLLAKAVAGE 474 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~e 474 (795)
|+|+|++|+|||+|++.+.+.
T Consensus 25 i~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 25 LLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 899999999999999999874
No 473
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=90.30 E-value=0.13 Score=49.31 Aligned_cols=22 Identities=36% Similarity=0.555 Sum_probs=20.0
Q ss_pred ceEEECCCCCchhHHHHHhhhh
Q 003795 453 GILLCGPPGVGKTLLAKAVAGE 474 (795)
Q Consensus 453 giLL~GPpGtGKTtLakaLA~e 474 (795)
.|+++|++|+|||+|++.+.+.
T Consensus 20 ~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 20 RLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3899999999999999999864
No 474
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=90.26 E-value=0.13 Score=50.00 Aligned_cols=21 Identities=29% Similarity=0.550 Sum_probs=19.5
Q ss_pred eEEECCCCCchhHHHHHhhhh
Q 003795 454 ILLCGPPGVGKTLLAKAVAGE 474 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~e 474 (795)
|+|+|++|+|||||++.+.+.
T Consensus 17 i~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 17 VIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 899999999999999999864
No 475
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=90.20 E-value=0.13 Score=50.03 Aligned_cols=21 Identities=33% Similarity=0.607 Sum_probs=19.6
Q ss_pred eEEECCCCCchhHHHHHhhhh
Q 003795 454 ILLCGPPGVGKTLLAKAVAGE 474 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~e 474 (795)
|+|+|++|+|||||++.+.+.
T Consensus 11 i~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 11 VIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHHcC
Confidence 899999999999999999874
No 476
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=90.19 E-value=0.13 Score=49.49 Aligned_cols=21 Identities=43% Similarity=0.654 Sum_probs=19.7
Q ss_pred eEEECCCCCchhHHHHHhhhh
Q 003795 454 ILLCGPPGVGKTLLAKAVAGE 474 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~e 474 (795)
|+|+|++|+|||+|++.+.+.
T Consensus 19 i~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 19 LLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHHcC
Confidence 899999999999999999874
No 477
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=90.13 E-value=0.15 Score=59.15 Aligned_cols=32 Identities=22% Similarity=0.232 Sum_probs=27.0
Q ss_pred eEEECCCCCchhHHHHHhhhhcc----ccEEEeecc
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEAG----VNFFSISAS 485 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el~----~~~~~is~s 485 (795)
|+|+|++|+||||++++|+..++ .+++.++..
T Consensus 399 I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D 434 (573)
T 1m8p_A 399 IFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGD 434 (573)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHH
T ss_pred EEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcH
Confidence 88999999999999999999876 566666643
No 478
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=90.13 E-value=0.13 Score=49.99 Aligned_cols=22 Identities=36% Similarity=0.451 Sum_probs=19.9
Q ss_pred ceEEECCCCCchhHHHHHhhhh
Q 003795 453 GILLCGPPGVGKTLLAKAVAGE 474 (795)
Q Consensus 453 giLL~GPpGtGKTtLakaLA~e 474 (795)
.|+|+|++|+|||+|++.+.+.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3899999999999999999874
No 479
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=90.09 E-value=0.14 Score=49.59 Aligned_cols=21 Identities=19% Similarity=0.229 Sum_probs=18.9
Q ss_pred eEEECCCCCchhHHHHHhhhh
Q 003795 454 ILLCGPPGVGKTLLAKAVAGE 474 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~e 474 (795)
|+|+|++|+|||+|++.+.+.
T Consensus 23 i~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 23 VGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEECCTTSCHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 899999999999999887763
No 480
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=90.08 E-value=0.13 Score=54.65 Aligned_cols=21 Identities=38% Similarity=0.711 Sum_probs=20.0
Q ss_pred eEEECCCCCchhHHHHHhhhh
Q 003795 454 ILLCGPPGVGKTLLAKAVAGE 474 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~e 474 (795)
+.|+|+||+|||||+++|.+.
T Consensus 11 VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 11 IAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEECSSSSSHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHCC
Confidence 899999999999999999985
No 481
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=90.01 E-value=0.13 Score=51.85 Aligned_cols=23 Identities=30% Similarity=0.429 Sum_probs=20.9
Q ss_pred eEEECCCCCchhHHHHHhhhhcc
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEAG 476 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el~ 476 (795)
|.|.|++|+||||+++.|+..+.
T Consensus 9 i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 9 VTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999998764
No 482
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=89.98 E-value=0.11 Score=49.29 Aligned_cols=21 Identities=19% Similarity=0.197 Sum_probs=19.6
Q ss_pred eEEECCCCCchhHHHHHhhhh
Q 003795 454 ILLCGPPGVGKTLLAKAVAGE 474 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~e 474 (795)
|+++|++|+|||+|++.+.+.
T Consensus 10 i~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 10 LGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEECCGGGCHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 899999999999999999874
No 483
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=89.93 E-value=0.14 Score=48.48 Aligned_cols=21 Identities=29% Similarity=0.335 Sum_probs=19.5
Q ss_pred eEEECCCCCchhHHHHHhhhh
Q 003795 454 ILLCGPPGVGKTLLAKAVAGE 474 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~e 474 (795)
|+++|++|+|||+|++.+.+.
T Consensus 11 i~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 11 CVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 899999999999999999864
No 484
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=89.91 E-value=0.092 Score=59.28 Aligned_cols=25 Identities=28% Similarity=0.422 Sum_probs=22.3
Q ss_pred ceEEECCCCCchhHHHHHhhhhccc
Q 003795 453 GILLCGPPGVGKTLLAKAVAGEAGV 477 (795)
Q Consensus 453 giLL~GPpGtGKTtLakaLA~el~~ 477 (795)
-|+|+|.||+||||+++.|+..++.
T Consensus 41 ~IvlvGlpGsGKSTia~~La~~l~~ 65 (469)
T 1bif_A 41 LIVMVGLPARGKTYISKKLTRYLNF 65 (469)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhc
Confidence 3899999999999999999987653
No 485
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=89.89 E-value=0.067 Score=64.73 Aligned_cols=34 Identities=26% Similarity=0.382 Sum_probs=29.0
Q ss_pred cccccCcccCCc--eEEECCCCCchhHHHHH-hhhhc
Q 003795 442 MYRRRGVRIPGG--ILLCGPPGVGKTLLAKA-VAGEA 475 (795)
Q Consensus 442 ~~~~~gl~i~~g--iLL~GPpGtGKTtLaka-LA~el 475 (795)
.++++++.+|.| +.|+|+||+|||||++. |++.+
T Consensus 512 ~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l 548 (842)
T 2vf7_A 512 NLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDAL 548 (842)
T ss_dssp TEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHH
T ss_pred ccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHH
Confidence 467788999988 88999999999999997 76543
No 486
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=89.85 E-value=0.15 Score=49.03 Aligned_cols=21 Identities=38% Similarity=0.620 Sum_probs=19.6
Q ss_pred eEEECCCCCchhHHHHHhhhh
Q 003795 454 ILLCGPPGVGKTLLAKAVAGE 474 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~e 474 (795)
|+|+|++|+|||+|++.+.+.
T Consensus 18 i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 18 ILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 899999999999999999874
No 487
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=89.85 E-value=0.15 Score=49.55 Aligned_cols=22 Identities=27% Similarity=0.447 Sum_probs=20.0
Q ss_pred ceEEECCCCCchhHHHHHhhhh
Q 003795 453 GILLCGPPGVGKTLLAKAVAGE 474 (795)
Q Consensus 453 giLL~GPpGtGKTtLakaLA~e 474 (795)
.|+|+|++|+|||+|++.+.+.
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3899999999999999999864
No 488
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=89.79 E-value=0.15 Score=49.30 Aligned_cols=21 Identities=24% Similarity=0.414 Sum_probs=19.3
Q ss_pred eEEECCCCCchhHHHHHhhhh
Q 003795 454 ILLCGPPGVGKTLLAKAVAGE 474 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~e 474 (795)
|+|+|++|+|||+|++.+.+.
T Consensus 24 i~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 24 LAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCcHHHHHHHHHhC
Confidence 899999999999999998763
No 489
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=89.77 E-value=0.11 Score=56.53 Aligned_cols=30 Identities=20% Similarity=0.361 Sum_probs=22.8
Q ss_pred cccCcccCCceEEECCCCCchhHHHHHhhhh
Q 003795 444 RRRGVRIPGGILLCGPPGVGKTLLAKAVAGE 474 (795)
Q Consensus 444 ~~~gl~i~~giLL~GPpGtGKTtLakaLA~e 474 (795)
.++.+.+| -|+++|++|+|||||+++|.+.
T Consensus 28 ~~i~~~lp-~I~vvG~~~sGKSSLln~l~g~ 57 (360)
T 3t34_A 28 PTLWDSLP-AIAVVGGQSSGKSSVLESIVGK 57 (360)
T ss_dssp ----CCCC-EEEEECBTTSSHHHHHHHHHTS
T ss_pred ccccccCC-EEEEECCCCCcHHHHHHHHhCC
Confidence 34445555 5999999999999999999984
No 490
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=89.77 E-value=0.15 Score=49.23 Aligned_cols=21 Identities=29% Similarity=0.377 Sum_probs=19.5
Q ss_pred eEEECCCCCchhHHHHHhhhh
Q 003795 454 ILLCGPPGVGKTLLAKAVAGE 474 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~e 474 (795)
|+|+|++|+|||+|++.+.+.
T Consensus 25 i~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 25 LTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 899999999999999999863
No 491
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=89.77 E-value=0.13 Score=50.91 Aligned_cols=23 Identities=30% Similarity=0.443 Sum_probs=20.9
Q ss_pred ceEEECCCCCchhHHHHHhhhhc
Q 003795 453 GILLCGPPGVGKTLLAKAVAGEA 475 (795)
Q Consensus 453 giLL~GPpGtGKTtLakaLA~el 475 (795)
.++|+|++|+|||||+..|++.+
T Consensus 32 ~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 32 AVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 38999999999999999999875
No 492
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=89.76 E-value=0.14 Score=49.73 Aligned_cols=21 Identities=29% Similarity=0.488 Sum_probs=19.5
Q ss_pred eEEECCCCCchhHHHHHhhhh
Q 003795 454 ILLCGPPGVGKTLLAKAVAGE 474 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~e 474 (795)
|+|+|++|+|||+|++.+.+.
T Consensus 26 i~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 26 VCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEECTTSSHHHHHHHHHHC
T ss_pred EEEECcCCCCHHHHHHHHhcC
Confidence 899999999999999999864
No 493
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=89.75 E-value=0.17 Score=51.19 Aligned_cols=29 Identities=14% Similarity=0.106 Sum_probs=20.7
Q ss_pred eEEECCCCCchhHHHHHhhhhc---cccEEEe
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEA---GVNFFSI 482 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el---~~~~~~i 482 (795)
.+++||.|+||||.+-.++... +..++.+
T Consensus 31 ~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~ 62 (214)
T 2j9r_A 31 EVICGSMFSGKSEELIRRVRRTQFAKQHAIVF 62 (214)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEE
Confidence 5689999999999887766543 4444444
No 494
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=89.75 E-value=0.15 Score=49.77 Aligned_cols=20 Identities=50% Similarity=0.820 Sum_probs=19.0
Q ss_pred eEEECCCCCchhHHHHHhhh
Q 003795 454 ILLCGPPGVGKTLLAKAVAG 473 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~ 473 (795)
|+|+|++|+|||+|++.+.+
T Consensus 9 v~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 9 VVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 89999999999999999986
No 495
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=89.74 E-value=0.13 Score=49.64 Aligned_cols=22 Identities=32% Similarity=0.459 Sum_probs=20.2
Q ss_pred eEEECCCCCchhHHHHHhhhhc
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEA 475 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el 475 (795)
|+|+|++|+|||+|++.+.+..
T Consensus 26 i~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 26 LLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCcCHHHHHHHHhcCC
Confidence 8999999999999999998743
No 496
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=89.72 E-value=0.15 Score=49.31 Aligned_cols=21 Identities=38% Similarity=0.461 Sum_probs=19.7
Q ss_pred eEEECCCCCchhHHHHHhhhh
Q 003795 454 ILLCGPPGVGKTLLAKAVAGE 474 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~e 474 (795)
|+|+|++|+|||+|++.+.+.
T Consensus 26 i~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 26 IVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHhcC
Confidence 899999999999999999874
No 497
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=89.70 E-value=0.16 Score=49.01 Aligned_cols=21 Identities=33% Similarity=0.487 Sum_probs=19.4
Q ss_pred eEEECCCCCchhHHHHHhhhh
Q 003795 454 ILLCGPPGVGKTLLAKAVAGE 474 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~e 474 (795)
|+|+|++|+|||+|++.+.+.
T Consensus 23 i~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 23 IIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 899999999999999999753
No 498
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=89.68 E-value=0.13 Score=52.66 Aligned_cols=23 Identities=26% Similarity=0.239 Sum_probs=18.1
Q ss_pred eEEECCCCCchhHHHHHhhhhcc
Q 003795 454 ILLCGPPGVGKTLLAKAVAGEAG 476 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~el~ 476 (795)
|.|.||+|+||||+++.|+..+.
T Consensus 28 I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 28 ITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp EEEECCC---CHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999998773
No 499
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=89.68 E-value=0.16 Score=49.19 Aligned_cols=21 Identities=29% Similarity=0.510 Sum_probs=19.6
Q ss_pred eEEECCCCCchhHHHHHhhhh
Q 003795 454 ILLCGPPGVGKTLLAKAVAGE 474 (795)
Q Consensus 454 iLL~GPpGtGKTtLakaLA~e 474 (795)
|+|+|++|+|||+|++.+.+.
T Consensus 24 i~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 24 YIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHhcC
Confidence 899999999999999999864
No 500
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=89.64 E-value=0.16 Score=49.60 Aligned_cols=22 Identities=27% Similarity=0.446 Sum_probs=20.0
Q ss_pred ceEEECCCCCchhHHHHHhhhh
Q 003795 453 GILLCGPPGVGKTLLAKAVAGE 474 (795)
Q Consensus 453 giLL~GPpGtGKTtLakaLA~e 474 (795)
.|+|+|++|+|||+|++.+.+.
T Consensus 30 ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 30 KIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 3899999999999999999864
Done!