Query 003796
Match_columns 795
No_of_seqs 150 out of 558
Neff 6.4
Searched_HMMs 46136
Date Thu Mar 28 12:11:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003796.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003796hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1980 Uncharacterized conser 100.0 5E-182 1E-186 1491.7 47.3 735 3-787 7-748 (754)
2 COG5192 BMS1 GTP-binding prote 100.0 1E-144 2E-149 1178.2 34.4 715 32-787 26-931 (1077)
3 COG5177 Uncharacterized conser 100.0 5E-138 1E-142 1114.0 31.5 727 4-791 8-767 (769)
4 PF04950 DUF663: Protein of un 100.0 6E-108 1E-112 876.5 7.2 292 486-781 1-297 (297)
5 cd01882 BMS1 Bms1. Bms1 is an 100.0 2.1E-31 4.5E-36 277.4 21.2 206 45-263 7-223 (225)
6 smart00785 AARP2CN AARP2CN (NU 100.0 1.6E-32 3.5E-37 240.9 10.1 82 228-309 1-83 (83)
7 PF08142 AARP2CN: AARP2CN (NUC 100.0 5.1E-32 1.1E-36 239.0 9.5 82 228-309 1-85 (85)
8 PRK12735 elongation factor Tu; 98.6 6E-06 1.3E-10 93.6 22.6 214 75-304 8-263 (396)
9 CHL00071 tufA elongation facto 98.6 8.6E-06 1.9E-10 92.7 23.6 215 75-305 8-272 (409)
10 PRK12736 elongation factor Tu; 98.5 9.7E-06 2.1E-10 91.8 22.6 213 76-304 9-261 (394)
11 PRK10512 selenocysteinyl-tRNA- 98.5 6.3E-06 1.4E-10 98.1 21.6 209 80-309 1-228 (614)
12 PTZ00327 eukaryotic translatio 98.4 2.1E-05 4.5E-10 90.6 21.4 166 122-295 116-289 (460)
13 TIGR00475 selB selenocysteine- 98.4 3.2E-05 6.9E-10 91.8 23.3 208 80-310 1-231 (581)
14 TIGR00485 EF-Tu translation el 98.4 2.6E-05 5.6E-10 88.4 21.5 215 76-305 9-262 (394)
15 PF00009 GTP_EFTU: Elongation 98.4 1.1E-05 2.4E-10 81.6 16.6 146 80-236 4-182 (188)
16 PRK00049 elongation factor Tu; 98.4 2.4E-05 5.2E-10 88.7 20.7 206 76-297 9-253 (396)
17 PLN03126 Elongation factor Tu; 98.4 3.8E-05 8.2E-10 89.0 22.5 207 76-298 78-331 (478)
18 PRK04000 translation initiatio 98.4 3.4E-05 7.5E-10 87.9 21.8 163 123-295 85-257 (411)
19 PLN03127 Elongation factor Tu; 98.3 5E-05 1.1E-09 87.4 22.3 215 76-305 58-315 (447)
20 TIGR03680 eif2g_arch translati 98.3 5.4E-05 1.2E-09 86.2 21.8 164 122-293 79-251 (406)
21 PTZ00141 elongation factor 1- 98.0 0.00046 9.9E-09 79.6 21.5 174 122-305 84-283 (446)
22 PF10662 PduV-EutP: Ethanolami 98.0 2.2E-05 4.7E-10 76.4 8.8 130 82-236 4-141 (143)
23 KOG0461 Selenocysteine-specifi 98.0 0.00083 1.8E-08 72.9 20.5 167 602-769 296-492 (522)
24 cd01888 eIF2_gamma eIF2-gamma 97.9 0.00024 5.3E-09 72.9 14.7 113 123-243 83-201 (203)
25 cd01884 EF_Tu EF-Tu subfamily. 97.9 0.0006 1.3E-08 70.0 17.0 137 80-226 3-166 (195)
26 CHL00189 infB translation init 97.7 0.0013 2.8E-08 79.8 19.5 198 77-293 242-458 (742)
27 TIGR01394 TypA_BipA GTP-bindin 97.7 0.0044 9.5E-08 73.9 22.3 210 80-305 2-253 (594)
28 cd04171 SelB SelB subfamily. 97.6 0.0017 3.7E-08 62.7 15.5 131 81-225 2-148 (164)
29 PRK05306 infB translation init 97.6 0.003 6.5E-08 77.2 20.7 203 77-307 288-510 (787)
30 TIGR02034 CysN sulfate adenyly 97.6 0.0045 9.7E-08 70.6 20.8 169 122-306 79-268 (406)
31 TIGR00487 IF-2 translation ini 97.6 0.0045 9.7E-08 73.7 21.0 194 78-292 86-297 (587)
32 PRK12317 elongation factor 1-a 97.6 0.0064 1.4E-07 69.7 21.3 171 122-305 83-275 (425)
33 cd04165 GTPBP1_like GTPBP1-lik 97.5 0.0028 6E-08 66.5 15.8 80 122-211 83-168 (224)
34 TIGR00483 EF-1_alpha translati 97.5 0.012 2.6E-07 67.5 22.0 172 122-306 84-278 (426)
35 PRK05124 cysN sulfate adenylyl 97.4 0.008 1.7E-07 69.9 19.7 173 122-309 106-299 (474)
36 PLN00043 elongation factor 1-a 97.4 0.014 3.1E-07 67.4 20.9 172 122-305 84-283 (447)
37 cd01887 IF2_eIF5B IF2/eIF5B (i 97.4 0.0062 1.3E-07 59.3 15.1 143 81-238 2-163 (168)
38 cd01889 SelB_euk SelB subfamil 97.3 0.0044 9.6E-08 62.7 14.4 113 122-244 67-189 (192)
39 PRK10218 GTP-binding protein; 97.3 0.022 4.7E-07 68.2 22.1 208 80-303 6-255 (607)
40 PRK05506 bifunctional sulfate 97.3 0.02 4.2E-07 69.1 21.4 171 122-308 103-294 (632)
41 TIGR00491 aIF-2 translation in 97.2 0.033 7.2E-07 66.4 21.8 215 78-313 4-287 (590)
42 TIGR01393 lepA GTP-binding pro 97.2 0.038 8.3E-07 66.1 22.1 207 80-305 4-239 (595)
43 cd04166 CysN_ATPS CysN_ATPS su 97.1 0.0095 2.1E-07 61.4 14.0 64 122-194 76-142 (208)
44 PRK05433 GTP-binding protein L 97.0 0.054 1.2E-06 64.9 21.4 166 122-305 73-243 (600)
45 PRK04004 translation initiatio 97.0 0.067 1.5E-06 63.9 22.0 212 80-311 7-287 (586)
46 cd01895 EngA2 EngA2 subfamily. 97.0 0.026 5.5E-07 54.6 15.2 133 79-225 2-157 (174)
47 cd01886 EF-G Elongation factor 96.9 0.015 3.3E-07 62.7 14.2 81 122-212 63-146 (270)
48 PRK00089 era GTPase Era; Revie 96.9 0.022 4.7E-07 61.8 15.4 142 81-241 7-171 (292)
49 cd04170 EF-G_bact Elongation f 96.9 0.015 3.2E-07 62.4 13.8 78 123-210 64-144 (268)
50 PRK00093 GTP-binding protein D 96.9 0.027 5.9E-07 64.5 16.7 132 77-225 171-326 (435)
51 COG3276 SelB Selenocysteine-sp 96.8 0.029 6.3E-07 63.4 15.8 163 123-306 50-222 (447)
52 cd01883 EF1_alpha Eukaryotic e 96.8 0.021 4.5E-07 59.4 13.3 102 122-225 76-187 (219)
53 cd04169 RF3 RF3 subfamily. Pe 96.7 0.022 4.7E-07 61.4 13.4 64 122-194 70-135 (267)
54 cd04168 TetM_like Tet(M)-like 96.7 0.027 5.9E-07 59.6 13.7 81 122-211 63-145 (237)
55 TIGR03598 GTPase_YsxC ribosome 96.5 0.043 9.4E-07 54.8 13.4 131 77-225 17-172 (179)
56 TIGR03594 GTPase_EngA ribosome 96.5 0.061 1.3E-06 61.5 16.1 132 77-225 170-326 (429)
57 cd01891 TypA_BipA TypA (tyrosi 96.5 0.11 2.3E-06 52.7 15.9 133 80-224 3-163 (194)
58 cd00881 GTP_translation_factor 96.4 0.13 2.9E-06 50.7 15.9 108 122-239 61-185 (189)
59 PRK15494 era GTPase Era; Provi 96.3 0.099 2.2E-06 58.3 16.1 140 79-240 52-215 (339)
60 COG0532 InfB Translation initi 96.3 0.058 1.3E-06 62.4 14.1 149 78-240 4-172 (509)
61 TIGR00436 era GTP-binding prot 96.3 0.081 1.7E-06 56.9 14.6 139 81-239 2-162 (270)
62 PRK14845 translation initiatio 96.2 0.27 5.9E-06 62.1 20.2 177 124-315 527-746 (1049)
63 cd04160 Arfrp1 Arfrp1 subfamil 96.2 0.093 2E-06 51.1 13.2 134 82-225 2-151 (167)
64 cd01890 LepA LepA subfamily. 96.1 0.16 3.4E-06 50.1 14.4 106 122-239 66-175 (179)
65 PRK00454 engB GTP-binding prot 96.0 0.16 3.5E-06 50.9 14.5 125 81-224 26-175 (196)
66 cd00154 Rab Rab family. Rab G 95.9 0.13 2.8E-06 48.7 12.6 139 82-236 3-157 (159)
67 cd04163 Era Era subfamily. Er 95.9 0.21 4.5E-06 47.6 13.8 140 79-236 3-164 (168)
68 PRK12739 elongation factor G; 95.8 0.097 2.1E-06 63.9 13.7 121 79-211 8-154 (691)
69 PRK00007 elongation factor G; 95.7 0.1 2.2E-06 63.7 13.4 121 80-212 11-157 (693)
70 PRK13351 elongation factor G; 95.6 0.16 3.5E-06 61.9 14.6 120 80-211 9-154 (687)
71 cd00880 Era_like Era (E. coli 95.6 0.34 7.3E-06 45.4 13.8 103 123-236 45-159 (163)
72 KOG0458 Elongation factor 1 al 95.4 0.41 9E-06 56.0 16.1 179 121-310 253-460 (603)
73 COG5257 GCD11 Translation init 95.4 0.31 6.6E-06 53.4 14.0 134 120-260 83-221 (415)
74 cd01885 EF2 EF2 (for archaea a 95.4 0.19 4.2E-06 52.7 12.4 64 122-194 72-137 (222)
75 COG1159 Era GTPase [General fu 95.3 0.29 6.3E-06 53.2 13.3 140 81-239 8-170 (298)
76 PRK03003 GTP-binding protein D 95.0 0.62 1.3E-05 54.3 16.5 128 78-224 210-363 (472)
77 cd04167 Snu114p Snu114p subfam 95.0 0.34 7.4E-06 50.0 12.7 65 121-194 69-135 (213)
78 PRK00741 prfC peptide chain re 95.0 0.3 6.5E-06 57.7 13.7 80 122-210 78-159 (526)
79 PRK03003 GTP-binding protein D 95.0 0.21 4.5E-06 58.3 12.3 114 71-194 30-158 (472)
80 cd01878 HflX HflX subfamily. 94.9 0.77 1.7E-05 46.6 15.0 101 80-194 42-165 (204)
81 cd01897 NOG NOG1 is a nucleola 94.9 0.56 1.2E-05 45.6 13.4 138 81-237 2-164 (168)
82 TIGR00503 prfC peptide chain r 94.9 0.31 6.8E-06 57.6 13.5 82 122-212 79-162 (527)
83 cd01876 YihA_EngB The YihA (En 94.7 0.81 1.8E-05 43.7 13.7 131 82-224 2-152 (170)
84 cd00876 Ras Ras family. The R 94.6 0.59 1.3E-05 44.6 12.6 106 82-194 2-116 (160)
85 PRK09518 bifunctional cytidyla 94.6 0.68 1.5E-05 56.8 16.0 127 79-224 450-602 (712)
86 TIGR03594 GTPase_EngA ribosome 94.5 0.23 5E-06 56.7 11.1 96 82-194 2-119 (429)
87 PRK12740 elongation factor G; 94.4 1.2 2.5E-05 54.3 17.4 80 122-211 59-141 (668)
88 TIGR00484 EF-G translation elo 94.4 0.44 9.6E-06 58.2 13.7 121 80-210 11-155 (689)
89 KOG1145 Mitochondrial translat 94.4 0.34 7.3E-06 56.3 11.5 133 77-224 151-297 (683)
90 cd04152 Arl4_Arl7 Arl4/Arl7 su 94.3 0.94 2E-05 45.4 13.7 104 79-194 3-121 (183)
91 TIGR02528 EutP ethanolamine ut 94.3 0.28 6E-06 46.6 9.4 90 82-194 3-100 (142)
92 cd01894 EngA1 EngA1 subfamily. 94.2 0.62 1.3E-05 44.3 11.7 98 83-194 1-117 (157)
93 cd04161 Arl2l1_Arl13_like Arl2 94.2 0.32 6.9E-06 48.0 9.9 104 82-194 2-112 (167)
94 cd04157 Arl6 Arl6 subfamily. 94.1 1 2.2E-05 43.3 13.0 100 82-194 2-116 (162)
95 cd04114 Rab30 Rab30 subfamily. 94.0 0.52 1.1E-05 45.9 11.0 102 80-194 8-124 (169)
96 cd04159 Arl10_like Arl10-like 94.0 0.91 2E-05 42.9 12.4 99 82-194 2-113 (159)
97 cd04151 Arl1 Arl1 subfamily. 94.0 1 2.2E-05 43.5 12.9 140 82-237 2-156 (158)
98 cd04146 RERG_RasL11_like RERG/ 94.0 0.99 2.1E-05 43.9 12.8 141 82-238 2-161 (165)
99 PRK12296 obgE GTPase CgtA; Rev 93.9 1.1 2.3E-05 52.7 14.8 132 82-225 162-322 (500)
100 cd04156 ARLTS1 ARLTS1 subfamil 93.8 1.5 3.2E-05 42.2 13.7 100 82-194 2-113 (160)
101 cd04153 Arl5_Arl8 Arl5/Arl8 su 93.8 1.1 2.5E-05 44.3 13.1 102 79-194 15-128 (174)
102 cd01866 Rab2 Rab2 subfamily. 93.8 0.87 1.9E-05 44.6 12.1 102 81-194 6-121 (168)
103 cd01861 Rab6 Rab6 subfamily. 93.7 0.9 1.9E-05 43.7 11.8 101 82-194 3-117 (161)
104 PRK12298 obgE GTPase CgtA; Rev 93.6 1.1 2.3E-05 51.2 13.8 143 82-238 162-330 (390)
105 PTZ00416 elongation factor 2; 93.6 0.31 6.7E-06 60.8 10.3 64 122-194 91-156 (836)
106 cd01898 Obg Obg subfamily. Th 93.5 0.92 2E-05 44.1 11.7 142 82-237 3-167 (170)
107 KOG0466 Translation initiation 93.5 0.45 9.7E-06 51.6 9.9 131 123-260 125-260 (466)
108 COG1160 Predicted GTPases [Gen 93.4 1.1 2.5E-05 51.2 13.4 133 78-225 177-333 (444)
109 smart00175 RAB Rab subfamily o 93.3 0.68 1.5E-05 44.5 10.3 101 82-194 3-117 (164)
110 TIGR00231 small_GTP small GTP- 93.2 0.9 1.9E-05 42.4 10.8 100 80-194 2-120 (161)
111 cd04113 Rab4 Rab4 subfamily. 92.9 1 2.2E-05 43.5 10.8 100 82-194 3-117 (161)
112 cd01862 Rab7 Rab7 subfamily. 92.9 1.9 4.1E-05 41.8 12.8 101 82-194 3-121 (172)
113 smart00178 SAR Sar1p-like memb 92.8 2 4.4E-05 43.1 13.2 100 80-194 18-130 (184)
114 PRK07560 elongation factor EF- 92.7 0.55 1.2E-05 57.8 10.5 106 79-194 20-151 (731)
115 cd01863 Rab18 Rab18 subfamily. 92.6 1.8 3.9E-05 41.7 12.2 100 82-194 3-118 (161)
116 PF01926 MMR_HSR1: 50S ribosom 92.3 0.78 1.7E-05 42.2 8.7 94 82-187 2-113 (116)
117 COG5256 TEF1 Translation elong 92.3 0.53 1.2E-05 53.2 8.8 101 122-224 84-192 (428)
118 cd04136 Rap_like Rap-like subf 92.2 1.5 3.2E-05 42.2 11.0 106 81-194 3-118 (163)
119 cd01860 Rab5_related Rab5-rela 92.2 1.9 4.1E-05 41.5 11.7 101 82-194 4-118 (163)
120 PRK15467 ethanolamine utilizat 92.0 1.8 4E-05 42.5 11.5 137 81-242 3-148 (158)
121 smart00173 RAS Ras subfamily o 92.0 2.2 4.8E-05 41.2 11.9 105 82-194 3-117 (164)
122 cd00879 Sar1 Sar1 subfamily. 91.9 3.2 6.9E-05 41.4 13.4 102 79-194 19-132 (190)
123 cd04149 Arf6 Arf6 subfamily. 91.9 2.7 5.9E-05 41.5 12.7 101 80-194 10-122 (168)
124 cd04124 RabL2 RabL2 subfamily. 91.8 7 0.00015 37.9 15.3 100 82-194 3-116 (161)
125 cd04158 ARD1 ARD1 subfamily. 91.8 2.9 6.3E-05 41.1 12.6 104 82-194 2-112 (169)
126 cd04106 Rab23_lke Rab23-like s 91.8 2.4 5.3E-05 40.7 11.9 137 82-238 3-160 (162)
127 TIGR00490 aEF-2 translation el 91.6 0.9 2E-05 55.8 10.6 106 79-194 19-150 (720)
128 TIGR03156 GTP_HflX GTP-binding 91.6 3.6 7.7E-05 46.3 14.5 103 77-194 188-313 (351)
129 cd04150 Arf1_5_like Arf1-Arf5- 91.6 2.7 5.9E-05 41.0 12.1 104 82-194 3-113 (159)
130 PLN00116 translation elongatio 91.4 0.78 1.7E-05 57.3 10.0 63 122-193 97-161 (843)
131 cd04145 M_R_Ras_like M-Ras/R-R 91.4 3.3 7.1E-05 39.8 12.4 106 81-194 4-119 (164)
132 cd04110 Rab35 Rab35 subfamily. 91.4 3.9 8.5E-05 41.5 13.5 103 80-194 7-122 (199)
133 cd04125 RabA_like RabA-like su 91.3 4 8.6E-05 40.8 13.3 101 82-194 3-117 (188)
134 cd01868 Rab11_like Rab11-like. 91.3 3 6.6E-05 40.3 12.1 101 82-194 6-120 (165)
135 cd04123 Rab21 Rab21 subfamily. 91.2 3.1 6.8E-05 39.6 12.0 104 82-194 3-117 (162)
136 cd04135 Tc10 TC10 subfamily. 91.1 2.6 5.6E-05 41.2 11.5 101 82-194 3-116 (174)
137 PF08477 Miro: Miro-like prote 91.0 1 2.2E-05 41.2 8.1 73 82-156 2-85 (119)
138 cd01864 Rab19 Rab19 subfamily. 90.9 1.8 3.9E-05 42.1 10.1 105 82-194 6-120 (165)
139 PRK04213 GTP-binding protein; 90.9 8.2 0.00018 38.9 15.3 107 79-194 9-142 (201)
140 PRK00093 GTP-binding protein D 90.9 1.7 3.7E-05 49.8 11.5 98 81-194 3-121 (435)
141 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 90.9 3.5 7.6E-05 40.0 12.1 101 81-194 4-119 (166)
142 cd04142 RRP22 RRP22 subfamily. 90.6 4 8.7E-05 41.8 12.7 101 82-194 3-128 (198)
143 cd04139 RalA_RalB RalA/RalB su 90.6 3.7 8.1E-05 39.3 11.9 101 82-194 3-117 (164)
144 PTZ00133 ADP-ribosylation fact 90.5 1.5 3.3E-05 44.0 9.4 106 80-194 18-130 (182)
145 PRK09866 hypothetical protein; 90.5 1.6 3.4E-05 52.4 10.6 93 123-225 230-335 (741)
146 cd00882 Ras_like_GTPase Ras-li 90.4 3.7 8E-05 37.5 11.3 98 84-194 1-114 (157)
147 cd00157 Rho Rho (Ras homology) 90.0 3.9 8.4E-05 39.6 11.6 103 81-194 2-116 (171)
148 cd01852 AIG1 AIG1 (avrRpt2-ind 90.0 5.6 0.00012 40.4 13.1 144 82-242 3-185 (196)
149 cd04119 RJL RJL (RabJ-Like) su 89.8 4.1 8.8E-05 39.1 11.5 101 82-194 3-122 (168)
150 PRK12299 obgE GTPase CgtA; Rev 89.8 3.6 7.8E-05 46.0 12.4 98 82-194 161-283 (335)
151 PRK11058 GTPase HflX; Provisio 89.7 4.8 0.0001 46.5 13.6 105 76-194 195-321 (426)
152 cd00878 Arf_Arl Arf (ADP-ribos 89.7 5.7 0.00012 38.1 12.3 99 82-194 2-112 (158)
153 cd04105 SR_beta Signal recogni 89.6 4.1 8.9E-05 41.8 11.8 102 82-194 3-121 (203)
154 cd04155 Arl3 Arl3 subfamily. 89.5 6.6 0.00014 38.2 12.9 101 79-194 14-127 (173)
155 cd04164 trmE TrmE (MnmE, ThdF, 89.5 2.6 5.7E-05 39.9 9.7 96 81-194 3-119 (157)
156 cd04104 p47_IIGP_like p47 (47- 89.2 5 0.00011 40.9 12.1 132 79-226 1-165 (197)
157 cd04154 Arl2 Arl2 subfamily. 88.9 9.7 0.00021 37.4 13.6 101 80-194 15-127 (173)
158 cd01892 Miro2 Miro2 subfamily. 88.9 2.6 5.6E-05 41.6 9.5 101 81-194 6-120 (169)
159 PRK09518 bifunctional cytidyla 88.9 2.6 5.5E-05 51.9 11.3 101 80-194 276-395 (712)
160 cd01893 Miro1 Miro1 subfamily. 88.8 9.7 0.00021 37.1 13.4 106 82-194 3-115 (166)
161 cd01867 Rab8_Rab10_Rab13_like 88.6 3 6.5E-05 40.7 9.7 102 80-194 4-120 (167)
162 cd04111 Rab39 Rab39 subfamily. 88.6 5.8 0.00013 40.9 12.2 102 82-194 5-121 (211)
163 cd04162 Arl9_Arfrp2_like Arl9/ 88.6 3.7 8E-05 40.3 10.3 101 82-194 2-111 (164)
164 smart00177 ARF ARF-like small 88.2 2.7 5.9E-05 41.7 9.1 106 80-194 14-126 (175)
165 cd04120 Rab12 Rab12 subfamily. 88.1 5.9 0.00013 40.8 11.8 101 81-194 2-117 (202)
166 PRK09435 membrane ATPase/prote 88.0 6 0.00013 44.2 12.5 80 76-157 53-182 (332)
167 cd04115 Rab33B_Rab33A Rab33B/R 87.8 6.1 0.00013 38.7 11.3 105 81-194 4-121 (170)
168 cd04116 Rab9 Rab9 subfamily. 87.8 5.4 0.00012 38.8 10.9 106 80-194 6-126 (170)
169 cd04108 Rab36_Rab34 Rab34/Rab3 87.7 7.7 0.00017 38.3 12.0 105 82-194 3-118 (170)
170 cd04138 H_N_K_Ras_like H-Ras/N 87.6 12 0.00026 35.6 13.0 105 82-194 4-118 (162)
171 PLN03118 Rab family protein; P 87.2 8 0.00017 39.6 12.2 104 79-194 14-132 (211)
172 cd01865 Rab3 Rab3 subfamily. 87.1 7 0.00015 38.0 11.2 101 82-194 4-118 (165)
173 cd04147 Ras_dva Ras-dva subfam 86.8 11 0.00023 38.3 12.7 105 82-194 2-116 (198)
174 TIGR02729 Obg_CgtA Obg family 86.8 10 0.00022 42.2 13.5 143 82-237 160-325 (329)
175 PRK05291 trmE tRNA modificatio 86.6 7.5 0.00016 45.2 12.8 97 80-194 216-333 (449)
176 cd04112 Rab26 Rab26 subfamily. 86.5 7.9 0.00017 38.9 11.5 100 82-194 3-118 (191)
177 cd04176 Rap2 Rap2 subgroup. T 86.4 10 0.00022 36.6 11.8 102 81-194 3-118 (163)
178 cd04177 RSR1 RSR1 subgroup. R 86.4 7.5 0.00016 37.9 11.0 106 81-194 3-118 (168)
179 PTZ00369 Ras-like protein; Pro 86.0 11 0.00023 37.9 12.1 103 80-194 6-122 (189)
180 cd04143 Rhes_like Rhes_like su 85.7 16 0.00035 38.8 13.9 155 82-251 3-181 (247)
181 cd01870 RhoA_like RhoA-like su 85.6 17 0.00036 35.5 13.0 101 82-194 4-117 (175)
182 PRK12297 obgE GTPase CgtA; Rev 85.2 16 0.00035 42.2 14.3 101 82-194 161-286 (424)
183 PF02421 FeoB_N: Ferrous iron 85.2 2.3 4.9E-05 42.4 6.5 123 81-225 2-143 (156)
184 cd01896 DRG The developmentall 85.1 4.4 9.5E-05 42.7 9.1 84 82-182 3-106 (233)
185 cd01881 Obg_like The Obg-like 85.0 13 0.00028 36.0 11.9 66 84-156 1-86 (176)
186 TIGR00450 mnmE_trmE_thdF tRNA 84.9 7.2 0.00016 45.3 11.5 100 78-194 202-322 (442)
187 cd04137 RheB Rheb (Ras Homolog 84.5 28 0.0006 34.2 14.1 101 82-194 4-118 (180)
188 PRK09554 feoB ferrous iron tra 84.4 13 0.00028 46.2 14.0 137 80-238 4-165 (772)
189 PF00025 Arf: ADP-ribosylation 84.3 2.7 5.9E-05 42.0 6.8 103 77-194 12-127 (175)
190 COG1160 Predicted GTPases [Gen 84.3 5.4 0.00012 45.9 9.8 133 80-238 4-162 (444)
191 cd04122 Rab14 Rab14 subfamily. 84.1 16 0.00035 35.4 12.2 101 82-194 5-119 (166)
192 cd04148 RGK RGK subfamily. Th 83.9 11 0.00024 39.2 11.4 99 82-194 3-118 (221)
193 COG2262 HflX GTPases [General 83.7 8 0.00017 44.0 10.7 55 133-194 260-316 (411)
194 cd04121 Rab40 Rab40 subfamily. 83.6 28 0.00061 35.4 14.0 144 80-243 7-173 (189)
195 cd04140 ARHI_like ARHI subfami 83.5 16 0.00035 35.4 11.9 102 81-194 3-120 (165)
196 cd04117 Rab15 Rab15 subfamily. 83.4 16 0.00035 35.4 11.8 102 81-194 2-117 (161)
197 COG1163 DRG Predicted GTPase [ 83.3 16 0.00035 40.5 12.5 87 82-182 66-169 (365)
198 cd04132 Rho4_like Rho4-like su 83.2 9.2 0.0002 38.0 10.1 101 82-194 3-117 (187)
199 COG0050 TufB GTPases - transla 83.0 20 0.00043 39.4 12.7 203 78-297 11-251 (394)
200 cd01879 FeoB Ferrous iron tran 83.0 9.9 0.00021 36.1 9.9 61 123-194 43-113 (158)
201 cd04101 RabL4 RabL4 (Rab-like4 82.7 17 0.00037 34.9 11.6 104 82-194 3-119 (164)
202 TIGR00991 3a0901s02IAP34 GTP-b 82.1 39 0.00084 37.5 15.1 160 76-260 35-214 (313)
203 PLN00223 ADP-ribosylation fact 81.9 10 0.00022 38.0 9.9 100 81-194 19-130 (181)
204 COG1084 Predicted GTPase [Gene 81.8 10 0.00023 42.0 10.4 107 77-194 167-292 (346)
205 cd04130 Wrch_1 Wrch-1 subfamil 80.8 21 0.00046 34.9 11.6 101 82-194 3-116 (173)
206 PF00071 Ras: Ras family; Int 79.7 26 0.00056 33.6 11.6 105 82-194 2-116 (162)
207 cd00877 Ran Ran (Ras-related n 79.6 17 0.00037 35.6 10.5 105 81-194 2-116 (166)
208 cd01871 Rac1_like Rac1-like su 79.6 32 0.00069 34.1 12.5 101 82-194 4-117 (174)
209 cd04118 Rab24 Rab24 subfamily. 79.4 15 0.00033 36.6 10.3 104 82-194 3-117 (193)
210 PLN03110 Rab GTPase; Provision 79.4 22 0.00048 36.7 11.7 101 81-194 14-129 (216)
211 smart00174 RHO Rho (Ras homolo 79.0 12 0.00026 36.5 9.1 101 82-194 1-114 (174)
212 cd01850 CDC_Septin CDC/Septin. 78.7 64 0.0014 35.0 15.4 69 145-225 115-184 (276)
213 PLN03108 Rab family protein; P 78.5 35 0.00076 35.0 12.8 72 80-156 7-90 (210)
214 cd01858 NGP_1 NGP-1. Autoanti 78.5 10 0.00022 37.0 8.4 48 138-194 2-51 (157)
215 cd04109 Rab28 Rab28 subfamily. 78.4 25 0.00055 36.1 11.8 101 82-194 3-121 (215)
216 cd02036 MinD Bacterial cell di 77.9 12 0.00025 36.8 8.7 63 124-194 64-126 (179)
217 cd01853 Toc34_like Toc34-like 77.6 31 0.00068 36.9 12.4 110 76-194 28-161 (249)
218 cd04175 Rap1 Rap1 subgroup. T 75.5 28 0.00061 33.5 10.6 103 80-194 2-118 (164)
219 cd04144 Ras2 Ras2 subfamily. 75.3 42 0.00091 33.6 12.1 100 82-194 2-118 (190)
220 KOG1144 Translation initiation 74.7 50 0.0011 40.5 13.7 155 142-313 561-756 (1064)
221 cd01874 Cdc42 Cdc42 subfamily. 74.7 56 0.0012 32.3 12.7 101 82-194 4-117 (175)
222 cd04141 Rit_Rin_Ric Rit/Rin/Ri 74.3 58 0.0013 32.1 12.7 105 81-194 4-119 (172)
223 cd04134 Rho3 Rho3 subfamily. 72.9 21 0.00046 35.8 9.2 101 82-194 3-116 (189)
224 COG1763 MobB Molybdopterin-gua 72.9 13 0.00029 37.2 7.5 68 78-150 1-98 (161)
225 cd01857 HSR1_MMR1 HSR1/MMR1. 72.8 13 0.00028 35.7 7.3 50 136-194 3-54 (141)
226 cd04127 Rab27A Rab27a subfamil 72.7 41 0.0009 32.9 11.2 101 82-194 7-132 (180)
227 PLN03071 GTP-binding nuclear p 72.2 32 0.0007 35.6 10.7 106 76-194 10-129 (219)
228 cd01856 YlqF YlqF. Proteins o 72.1 14 0.00031 36.6 7.7 88 135-239 10-99 (171)
229 KOG1486 GTP-binding protein DR 71.4 6.5 0.00014 42.0 5.1 70 82-157 65-152 (364)
230 cd04128 Spg1 Spg1p. Spg1p (se 71.2 30 0.00066 34.6 9.9 99 82-194 3-116 (182)
231 KOG0410 Predicted GTP binding 71.1 31 0.00068 38.4 10.3 98 76-185 175-291 (410)
232 cd03110 Fer4_NifH_child This p 68.9 29 0.00062 34.4 9.1 64 122-194 92-155 (179)
233 cd01859 MJ1464 MJ1464. This f 68.8 22 0.00049 34.4 8.1 42 144-194 12-53 (156)
234 cd04107 Rab32_Rab38 Rab38/Rab3 67.3 50 0.0011 33.4 10.7 101 82-194 3-122 (201)
235 PF13460 NAD_binding_10: NADH( 67.2 31 0.00068 33.9 9.0 91 82-188 1-96 (183)
236 TIGR02836 spore_IV_A stage IV 67.2 85 0.0018 36.5 13.0 85 144-237 144-233 (492)
237 cd01849 YlqF_related_GTPase Yl 67.1 17 0.00038 35.3 7.0 80 146-239 1-83 (155)
238 PF03205 MobB: Molybdopterin g 67.1 17 0.00037 35.3 6.8 27 81-108 2-28 (140)
239 TIGR03596 GTPase_YlqF ribosome 67.0 25 0.00054 38.0 8.8 87 135-238 12-100 (276)
240 KOG0462 Elongation factor-type 66.0 89 0.0019 37.2 13.1 200 81-305 65-294 (650)
241 COG2451 Ribosomal protein L35A 64.7 15 0.00033 33.3 5.2 66 714-779 23-97 (100)
242 PHA02518 ParA-like protein; Pr 64.1 38 0.00083 34.2 9.1 75 124-207 78-158 (211)
243 COG0218 Predicted GTPase [Gene 64.0 41 0.00089 34.9 9.0 83 145-236 107-192 (200)
244 KOG0468 U5 snRNP-specific prot 62.9 47 0.001 40.2 10.3 68 112-188 183-256 (971)
245 PF09439 SRPRB: Signal recogni 62.3 54 0.0012 33.5 9.6 110 81-193 5-123 (181)
246 KOG1423 Ras-like GTPase ERA [C 62.1 45 0.00098 37.0 9.3 49 137-194 148-197 (379)
247 TIGR01007 eps_fam capsular exo 59.9 31 0.00067 35.1 7.5 63 124-194 129-192 (204)
248 cd04126 Rab20 Rab20 subfamily. 59.7 67 0.0015 33.6 10.1 101 82-194 3-112 (220)
249 PTZ00132 GTP-binding nuclear p 59.6 1.5E+02 0.0033 30.1 12.7 107 76-194 6-125 (215)
250 cd02038 FleN-like FleN is a me 58.5 62 0.0013 31.0 8.9 75 123-207 45-121 (139)
251 PTZ00258 GTP-binding protein; 58.3 29 0.00063 39.7 7.6 71 80-155 22-126 (390)
252 PRK09563 rbgA GTPase YlqF; Rev 57.6 48 0.001 36.0 8.9 49 135-194 15-63 (287)
253 PRK01889 GTPase RsgA; Reviewed 57.5 40 0.00086 38.0 8.5 80 142-236 110-192 (356)
254 cd03111 CpaE_like This protein 55.8 1.1E+02 0.0024 27.8 9.8 51 124-183 44-95 (106)
255 KOG1832 HIV-1 Vpr-binding prot 55.2 11 0.00025 46.2 3.7 16 306-321 1302-1317(1516)
256 cd01900 YchF YchF subfamily. 54.1 31 0.00067 37.6 6.6 69 82-156 1-104 (274)
257 cd03706 mtEFTU_III Domain III 54.1 76 0.0016 28.2 8.2 71 611-695 21-93 (93)
258 KOG1489 Predicted GTP-binding 53.1 2.2E+02 0.0049 31.9 12.8 135 82-235 199-364 (366)
259 PF00350 Dynamin_N: Dynamin fa 52.2 32 0.00068 33.4 5.9 63 121-191 99-167 (168)
260 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 51.8 1.5E+02 0.0032 31.4 11.1 102 81-194 15-129 (232)
261 TIGR01969 minD_arch cell divis 49.2 87 0.0019 32.5 9.0 64 123-194 109-172 (251)
262 cd04129 Rho2 Rho2 subfamily. 48.2 1.2E+02 0.0026 30.2 9.4 107 81-194 3-117 (187)
263 PF01247 Ribosomal_L35Ae: Ribo 48.0 29 0.00063 31.8 4.3 55 715-769 18-85 (95)
264 PRK10751 molybdopterin-guanine 47.9 67 0.0015 32.6 7.5 27 78-105 5-31 (173)
265 TIGR00157 ribosome small subun 47.7 2.4E+02 0.0051 30.0 12.0 84 142-237 34-119 (245)
266 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 47.5 1.7E+02 0.0036 30.7 10.7 101 82-194 4-117 (222)
267 PTZ00041 60S ribosomal protein 47.3 49 0.0011 31.5 5.8 64 715-778 37-116 (120)
268 PRK09602 translation-associate 47.2 58 0.0012 37.4 7.7 72 79-156 1-114 (396)
269 TIGR01425 SRP54_euk signal rec 46.1 1.9E+02 0.0041 33.6 11.6 19 76-94 97-115 (429)
270 PF05049 IIGP: Interferon-indu 45.5 1.7E+02 0.0036 33.5 10.9 105 76-194 32-153 (376)
271 PRK00098 GTPase RsgA; Reviewed 44.9 66 0.0014 35.2 7.5 47 141-194 77-123 (298)
272 smart00053 DYNc Dynamin, GTPas 44.3 62 0.0013 34.5 6.9 42 144-194 162-204 (240)
273 cd04131 Rnd Rnd subfamily. Th 44.1 1.8E+02 0.0039 28.9 10.0 102 82-194 4-117 (178)
274 COG2895 CysN GTPases - Sulfate 43.2 39 0.00084 38.1 5.2 64 122-194 85-151 (431)
275 PTZ00388 40S ribosomal protein 42.2 52 0.0011 34.0 5.6 76 623-698 106-188 (223)
276 KOG0780 Signal recognition par 42.1 14 0.00029 42.0 1.6 58 122-194 181-252 (483)
277 TIGR00750 lao LAO/AO transport 41.1 1.5E+02 0.0033 32.3 9.7 30 75-105 30-59 (300)
278 cd04178 Nucleostemin_like Nucl 40.8 41 0.0009 33.8 4.7 40 146-194 1-42 (172)
279 cd01899 Ygr210 Ygr210 subfamil 40.4 81 0.0018 35.0 7.4 32 124-156 70-111 (318)
280 COG0480 FusA Translation elong 40.2 61 0.0013 39.9 6.8 61 123-193 76-139 (697)
281 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 40.2 2.2E+02 0.0047 28.6 9.9 101 82-194 8-121 (182)
282 cd02042 ParA ParA and ParB of 40.1 2.5E+02 0.0055 24.8 9.4 72 81-156 1-73 (104)
283 TIGR00437 feoB ferrous iron tr 39.9 2.6E+02 0.0056 33.9 12.0 98 123-237 41-151 (591)
284 PRK04337 50S ribosomal protein 39.0 44 0.00096 30.1 4.0 53 716-768 19-76 (87)
285 PRK12289 GTPase RsgA; Reviewed 38.9 99 0.0022 34.9 7.8 82 142-237 87-171 (352)
286 PRK09601 GTP-binding protein Y 38.7 80 0.0017 35.9 7.0 72 80-156 3-108 (364)
287 COG5258 GTPBP1 GTPase [General 37.7 4.8E+02 0.01 30.2 12.5 130 145-292 227-384 (527)
288 KOG1191 Mitochondrial GTPase [ 37.7 69 0.0015 37.6 6.3 90 79-184 268-380 (531)
289 TIGR01968 minD_bact septum sit 36.2 97 0.0021 32.3 7.0 64 123-194 112-175 (261)
290 cd04102 RabL3 RabL3 (Rab-like3 36.0 3.2E+02 0.007 28.1 10.5 87 82-176 3-106 (202)
291 CHL00071 tufA elongation facto 35.2 5.9E+02 0.013 29.1 13.6 126 553-695 277-407 (409)
292 PF05729 NACHT: NACHT domain 35.0 1.1E+02 0.0023 29.1 6.5 28 80-108 1-28 (166)
293 cd01851 GBP Guanylate-binding 34.5 2.1E+02 0.0045 30.0 9.0 25 76-101 4-28 (224)
294 COG0486 ThdF Predicted GTPase 34.3 64 0.0014 37.5 5.4 99 79-194 217-336 (454)
295 PF04548 AIG1: AIG1 family; I 34.1 4.4E+02 0.0095 27.1 11.3 100 82-193 3-127 (212)
296 PF06858 NOG1: Nucleolar GTP-b 33.9 1.3E+02 0.0028 25.1 5.7 22 135-156 4-25 (58)
297 PRK13849 putative crown gall t 33.9 1.4E+02 0.0031 31.4 7.7 62 123-194 84-152 (231)
298 cd01855 YqeH YqeH. YqeH is an 33.6 73 0.0016 31.9 5.3 48 136-194 25-73 (190)
299 cd06375 PBP1_mGluR_groupII Lig 32.9 5.5E+02 0.012 29.7 13.0 156 77-259 102-268 (458)
300 COG0240 GpsA Glycerol-3-phosph 32.3 53 0.0011 36.7 4.2 72 142-233 69-142 (329)
301 CHL00175 minD septum-site dete 31.9 1.4E+02 0.0031 31.9 7.5 62 124-194 128-190 (281)
302 PRK10512 selenocysteinyl-tRNA- 31.8 5E+02 0.011 31.6 12.7 114 553-699 229-344 (614)
303 TIGR00483 EF-1_alpha translati 31.7 6.3E+02 0.014 29.0 13.1 128 553-696 282-423 (426)
304 cd01854 YjeQ_engC YjeQ/EngC. 31.6 1.7E+02 0.0037 31.9 8.0 45 142-194 76-121 (287)
305 cd06361 PBP1_GPC6A_like Ligand 31.4 6.3E+02 0.014 28.7 13.0 155 77-259 100-270 (403)
306 PRK10416 signal recognition pa 31.2 4.9E+02 0.011 28.9 11.6 18 77-94 112-129 (318)
307 PRK14495 putative molybdopteri 30.9 1.3E+02 0.0027 35.2 7.0 68 80-150 2-98 (452)
308 COG1866 PckA Phosphoenolpyruva 30.5 34 0.00073 39.6 2.4 95 591-699 148-249 (529)
309 cd04103 Centaurin_gamma Centau 29.8 3.7E+02 0.008 26.0 9.4 67 82-156 3-77 (158)
310 smart00763 AAA_PrkA PrkA AAA d 29.2 1.1E+02 0.0025 34.6 6.3 43 75-118 74-117 (361)
311 PRK13768 GTPase; Provisional 29.1 2.1E+02 0.0046 30.5 8.1 64 124-194 98-174 (253)
312 TIGR03877 thermo_KaiC_1 KaiC d 29.0 2.8E+02 0.006 29.1 8.9 28 66-93 8-35 (237)
313 cd01875 RhoG RhoG subfamily. 28.9 4.9E+02 0.011 26.0 10.4 103 80-194 4-119 (191)
314 PLN03126 Elongation factor Tu; 28.6 8.5E+02 0.018 28.7 13.6 126 553-695 346-476 (478)
315 KOG0460 Mitochondrial translat 28.6 6.5E+02 0.014 28.7 11.5 160 121-297 115-295 (449)
316 PRK13796 GTPase YqeH; Provisio 28.6 2E+02 0.0043 32.6 8.2 94 133-238 57-156 (365)
317 smart00176 RAN Ran (Ras-relate 28.3 4E+02 0.0087 27.2 9.7 69 117-194 38-111 (200)
318 PRK00771 signal recognition pa 28.3 4.2E+02 0.0091 30.9 10.8 29 77-106 93-121 (437)
319 cd06364 PBP1_CaSR Ligand-bindi 28.0 8.9E+02 0.019 28.5 13.8 148 77-246 115-274 (510)
320 TIGR03878 thermo_KaiC_2 KaiC d 27.9 3E+02 0.0065 29.4 9.0 33 69-102 26-58 (259)
321 KOG0400 40S ribosomal protein 27.8 1E+02 0.0022 29.8 4.6 73 169-247 67-140 (151)
322 COG4108 PrfC Peptide chain rel 27.5 85 0.0018 36.4 4.8 44 142-194 102-145 (528)
323 PRK15367 type III secretion sy 26.6 2E+02 0.0044 32.9 7.6 118 166-292 262-392 (395)
324 cd03708 GTPBP_III Domain III o 26.2 2.9E+02 0.0063 23.9 7.2 68 611-694 16-86 (87)
325 PRK04000 translation initiatio 25.8 1E+03 0.023 27.2 13.6 114 553-692 285-410 (411)
326 TIGR00993 3a0901s04IAP86 chlor 25.6 7.4E+02 0.016 30.8 12.3 108 79-194 118-248 (763)
327 PRK00285 ihfA integration host 25.1 36 0.00078 30.9 1.2 21 282-302 37-57 (99)
328 TIGR03680 eif2g_arch translati 24.7 8.8E+02 0.019 27.7 12.6 64 611-692 341-405 (406)
329 COG3839 MalK ABC-type sugar tr 24.5 98 0.0021 34.8 4.6 142 80-240 30-208 (338)
330 TIGR03597 GTPase_YqeH ribosome 24.3 2.2E+02 0.0047 32.1 7.5 93 133-237 51-149 (360)
331 cd04133 Rop_like Rop subfamily 24.3 5.7E+02 0.012 25.4 9.8 102 82-194 4-117 (176)
332 TIGR03018 pepcterm_TyrKin exop 24.1 2.2E+02 0.0048 29.0 7.0 55 124-189 150-205 (207)
333 TIGR00092 GTP-binding protein 24.1 1.6E+02 0.0036 33.4 6.4 70 80-155 3-108 (368)
334 KOG2972 Uncharacterized conser 24.0 5E+02 0.011 28.0 9.3 160 46-210 71-261 (276)
335 PRK12735 elongation factor Tu; 23.7 1.1E+03 0.024 26.8 13.3 120 553-695 269-394 (396)
336 PTZ00141 elongation factor 1- 23.6 1.2E+03 0.025 27.2 13.5 129 553-697 288-431 (446)
337 cd00591 HU_IHF Integration hos 23.6 42 0.00091 29.3 1.3 21 282-302 34-54 (87)
338 PRK08116 hypothetical protein; 23.4 2.3E+02 0.005 30.6 7.2 106 80-194 115-222 (268)
339 KOG3163 Uncharacterized conser 23.2 34 0.00074 35.2 0.7 70 624-700 144-227 (260)
340 cd01983 Fer4_NifH The Fer4_Nif 23.2 4.5E+02 0.0097 22.0 8.3 66 81-156 1-70 (99)
341 PRK13037 superantigen-like pro 23.1 2.3E+02 0.0051 30.0 6.8 137 626-768 42-205 (226)
342 PF01656 CbiA: CobQ/CobB/MinD/ 23.0 2.3E+02 0.005 27.8 6.7 62 124-194 96-160 (195)
343 PF00448 SRP54: SRP54-type pro 23.0 4.6E+02 0.01 26.8 9.0 18 79-96 1-18 (196)
344 KOG0459 Polypeptide release fa 23.0 63 0.0014 37.1 2.7 69 122-194 156-229 (501)
345 smart00411 BHL bacterial (prok 22.9 40 0.00087 29.7 1.0 21 282-302 35-55 (90)
346 TIGR03453 partition_RepA plasm 22.7 2.8E+02 0.006 31.5 8.0 78 124-210 236-325 (387)
347 PRK04328 hypothetical protein; 22.1 3.9E+02 0.0084 28.3 8.5 28 66-93 10-37 (249)
348 PRK11778 putative inner membra 22.0 2.8E+02 0.006 31.2 7.5 102 44-188 60-161 (330)
349 PRK10037 cell division protein 21.7 3.5E+02 0.0076 28.4 8.1 33 123-155 118-150 (250)
350 PF00216 Bac_DNA_binding: Bact 21.4 37 0.00079 29.9 0.4 20 282-301 35-54 (90)
351 KOG0463 GTP-binding protein GP 21.2 7.1E+02 0.015 28.6 10.2 110 144-262 244-379 (641)
352 TIGR03815 CpaE_hom_Actino heli 21.1 3.1E+02 0.0068 30.0 7.8 59 124-191 206-264 (322)
353 PRK12726 flagellar biosynthesi 20.7 8.5E+02 0.018 28.2 11.1 20 77-96 204-223 (407)
354 PRK05800 cobU adenosylcobinami 20.6 93 0.002 31.2 3.2 104 81-188 3-123 (170)
355 PRK00049 elongation factor Tu; 20.3 1.3E+03 0.028 26.3 13.8 121 553-695 269-394 (396)
356 PRK12724 flagellar biosynthesi 20.1 6E+02 0.013 29.6 9.9 18 77-94 221-238 (432)
No 1
>KOG1980 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=5.4e-182 Score=1491.71 Aligned_cols=735 Identities=37% Similarity=0.598 Sum_probs=634.3
Q ss_pred CCcccCCCCCCCCCCChhhhhhhhhhcCCccccCccccccccchHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCEEE
Q 003796 3 GSRVQVNKSHKSRFSTKSSRNLHKTAAKDKSRIGKSDCNVAKGAKAARVQRNKMLRDQKRLALLKEKRASSGIASPPRVI 82 (795)
Q Consensus 3 g~~kq~nK~hK~r~~sK~~~k~~~~~kg~~~~ka~~~~~~~~~~K~~Rr~~a~q~r~~Kr~~v~~~~R~~~~~~~pP~iV 82 (795)
|+||+.||+|||||+|||+++. ..||+++.+..+.+..++.+|.+|||||+|+|+|||+.+++..|.+||.+++|++|
T Consensus 7 s~lk~~~k~~kskhrskg~l~~--~~kg~~~~~~~~~k~~~~~sk~~rrn~akqlr~qk~~~v~e~~~~~~g~n~a~~li 84 (754)
T KOG1980|consen 7 SPLKNANKPHKSKHRSKGALKR--DYKGKVELKPLGHKPDKTVSKLQRRNQAKQLRKQKREDVLENTRLLGGQNGAPKLI 84 (754)
T ss_pred ccccccCccccccccccchhhh--hcCCcccccccCCCchhhhhHHHHHhHHHHHHHhHHHHHHHhhhhcccccccccee
Confidence 4899999999999999999998 99999999988888889999999999999999999999999999999999999999
Q ss_pred EEecCCCccChhhHHHHHHHhhccCCCCCcceEEEecCceeeEEEEeCCCCChHHHHHHHhhhceEEEeeeCCCcccccc
Q 003796 83 VLFGLSASVNLNSVREDLLRQLSSEGTGALSSTVSSSKYRLRTSVLQAPHGDLVGCMEMAKVADLVAFVASASSFSEESM 162 (795)
Q Consensus 83 ~Vvg~~~~~~~~sl~~~lvk~~~~~~~~~g~~tv~~~r~k~Ritfie~~~~dl~~~LD~aKvADlVll~idas~g~~~~~ 162 (795)
+++||++.+++.++ +--..-.....+.+.+.++|||+|+.|+.|. .+++++||+|||||+|||+++|+
T Consensus 85 ~~~pl~~~id~~~~----l~E~i~~~~~~~~i~~~i~rFK~~~~fl~P~-~n~~~~lD~~kv~D~~~f~~s~~------- 152 (754)
T KOG1980|consen 85 TGLPLKNQIDPLDI----LYEGIMVQEVDSKINVHIPRFKSNLKFLTPK-TNFLNILDAAKVSDFVVFLLSAV------- 152 (754)
T ss_pred eccchhhhcchhhh----hhhhhccccCCccceecchhhhhceeeeccc-cchhhhhhhhhhcceeeeecchh-------
Confidence 99999999987666 2211111222378899999999999999996 99999999999999999999999
Q ss_pred ccccChHHHHHHHHHHhcCCCceEEEeccCCc-chhhhHHHHHHHHhhcccccCCCCeeEEeCCHHHHHHHHHHHhhccc
Q 003796 163 SYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT-DLKKRKDLKKMCISSLTSEFPEDCKFYAADTKDELHKFLWLFKEQRL 241 (795)
Q Consensus 163 ~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~-~~Kk~~~~kK~lk~~f~~ef~~~~Klf~l~~~~E~~nL~R~Is~~k~ 241 (795)
+++|+||+.+++++++||+|++++|+.+|.. +.|++.++||.+.+++.++|+....|+.|+..+|.+||+|.||++++
T Consensus 153 -~~~~e~ge~i~~~~~~qGi~s~v~~v~~L~sv~~K~r~~vkK~l~~~~~k~f~s~~~v~~ld~~~dalnllR~l~~~k~ 231 (754)
T KOG1980|consen 153 -EEDDEFGEQIIRALEAQGIPSYVSVVSDLSSVHEKFRLDVKKALEKRISKFFPSEKRVMRLDTSQDALNLLRGLCVQKP 231 (754)
T ss_pred -hhhhHHHHHHHHHHhhcCCccceeeecccchhchhhhHHHHHHHHHHHHHhCCCcchheeccccchhHHHHHHhhhccc
Confidence 5699999999999999999999999776663 34999999999999999999988889999999999999999999999
Q ss_pred cCcccccCCCeEEEEeeEeccCCCCCCCceEEEEEEEeCCCCCCCCeEEeCCCCceeecee-eccC---CCCCCCccccC
Q 003796 242 TVPHWRNQRPFLMAQKVDVVADDCNSGKCTLLLHGYLRAHCLSVNQLVHISGAGDFQLGKI-EILK---DPFPLNARKES 317 (795)
Q Consensus 242 r~l~WR~~rpYmLadr~e~~~~~~~~~~~~l~v~GyvRG~~l~~n~lVHIpG~GDfqi~~I-~~~~---dP~p~~~~~~~ 317 (795)
++|.||++|+||+++-+++. .+.....|+|.+.|||||..||+|+||||||+|||||.+| ++.. ||.|+....+.
T Consensus 232 r~l~~rd~r~Yl~~~~vdf~-s~~s~~~gtL~i~G~vRG~~ln~NrLvHI~g~GDFqi~~I~~~p~~~qdp~~ik~~~~~ 310 (754)
T KOG1980|consen 232 RVLHWRDNRGYLFADLVDFV-SELSYSEGTLVIFGYVRGQELNVNRLVHIPGFGDFQINKIDEAPIDGQDPKIIKKFIDL 310 (754)
T ss_pred hheecccchhhhHHHhhhhc-cccCCCcceEEEEEEeecccccccceEeecCccceeEEEeecCCcccCCCcccCccCCC
Confidence 99999999999999988885 2224557999999999999999999999999999999999 4444 78777654331
Q ss_pred Ccccccccccceeeeec-CCCCCCCccccccCCCCCccCCCCCCChhhhhhHhhhhhhhhcccccCCCCCchhhhccccC
Q 003796 318 DAMESDEIHDLEVIRTL-SPDPLKLEPLLVENVPDPLAGEQTWPTEAEMAEADQNQKHRKQKKRALPRGTSEYQAAWIVD 396 (795)
Q Consensus 318 ~~m~~~~~~~~~~~~~l-~~~~~~~~~L~~e~~~d~~~~eqt~pteee~~~~~~~~~~~~~~k~~vpkg~s~yqa~w~~d 396 (795)
. -. ..+. ..+|.++.+|.++..||+|+.||+|||++|...++.+...++..++ ||||||+|||+||.|
T Consensus 311 s-------~e---~~i~~qsdpd~~~~l~~~~~pD~md~e~~~~t~de~~~~~~~~~~~~~~~~-VPKg~S~yqa~wi~d 379 (754)
T KOG1980|consen 311 S-------LE---FCISTQSDPDKADSLESEHTPDDMDVEQDWPTRDESNVAIKETEPMKRPKR-VPKGTSDYQAAWILD 379 (754)
T ss_pred C-------cc---eeeecccChhHhhhhhhcCCCchhhhhccccchhhhhhhccccchhccccc-cCCCccccceeeecC
Confidence 1 11 2333 6677889999999999999999999999998877665544555566 999999999999999
Q ss_pred CCCcCCCCCCCCccCCcccccccCCCCCCCCCCCCCCcchhhccccCccCCCCccccccccCCCCCHHH-HHHHHHHHHh
Q 003796 397 DSDEADSDSDNDADDGMVLDQEDRGFPGYEGTNNSDIDDDQASLNFRYADDGTENDSVMMEGEILTREQ-IEDEIKKIKE 475 (795)
Q Consensus 397 ~~~~~~~~~~~e~~d~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~e~-e~~~~~~~~~ 475 (795)
+++++|. .++.++.|++.++. ++++ +++.|+ ..++.+.+...+..+++.+|+.+++++ +.++++++++
T Consensus 380 e~~~~dk--~d~~ed~~m~ied~--~~de----~~~~EE---~~ds~~~~~~~~~~~d~~~D~~~dee~re~~e~~k~~k 448 (754)
T KOG1980|consen 380 EEEESDK--EDDNEDTEMEIEDE--FEDE----DSDEEE---LRDSIEAGGTEAEESDGFYDESSDEEARESEELEKYQK 448 (754)
T ss_pred Ccccccc--cccccchhhhhhhh--hhhc----cccchh---hhccccccccchhhccccccccchhhHHhHHHHHHHHH
Confidence 6554322 12222222111110 0000 001000 001111111011223445667777766 6677888877
Q ss_pred hcccCCCCCCCCCCCCCchHHHHHHHHhccccccCCCCCCCCCCchHHhhhhchhcHHHHHHHHHHHHhhhhccccCCCC
Q 003796 476 AHAEDEEFPDEVDTPLDVPARKRFAKYRGLKSFRTSSWDPKESLPPEYARIFAFDKFTRTQKHVFANALKMEQENMDDSV 555 (795)
Q Consensus 476 ~~~ed~~fpDEvdtp~d~~ar~Rf~kyRgLkSfrts~Wd~~E~lp~~y~ri~~f~~~~~~~k~~~~~~~~~~~~~~~~g~ 555 (795)
+ +++.+||||||||++.+||+||+|||||||||||+||++||||.+|+|||+|+||.+|+|+++++..+. .++
T Consensus 449 e-r~e~~fPDEvdt~~d~~ArerfqkYRGLksl~Ts~Wd~~En~P~dy~rlfqF~Nyrntkk~i~kk~~~e-----~~~- 521 (754)
T KOG1980|consen 449 E-REESEFPDEVDTPPDESARERFQKYRGLKSLRTSPWDAKENLPADYARLFQFQNYRNTKKRILKKEDNE-----AEA- 521 (754)
T ss_pred H-hHhhhCCCccccCCChHHHHHHHHhccccccccCCCcccccCcHHHHHHHhhhhhhhHHHHhhhhcccc-----ccc-
Confidence 7 778899999999999999999999999999999999999999999999999999999999999973221 122
Q ss_pred CCCcEEEEEEecCchhHHhhhccccCCCcEEEEecccccceeeEEEEEEEecCCCcccCCCCCeEEEEeeeeeeeeeeee
Q 003796 556 PASLYVRLHIKEVPAGIAHRLCEMAERSPLIASGLLQHESKMSVLHFSVKKHDTYDAPIKAKEELIFHVGFRQFVARPIF 635 (795)
Q Consensus 556 ~~G~yVri~i~~vp~~~~~~~~~~~~~~Plil~gLl~~E~k~svv~~~ikrh~~~~~~lKSkdpLi~s~GwRRFq~~Pif 635 (795)
.+|+||||+|+|||.++++.|.+. .+|||+|||||||||+|+||.++||+.|+.||||+++|||+||+|||.++|+|
T Consensus 522 ~~G~~V~v~l~nvP~~i~E~~~~~---~~lvvfglL~hEhKmtV~Nfvl~r~p~~e~Plkske~livq~G~Rrf~i~Plf 598 (754)
T KOG1980|consen 522 IPGQYVRVFLRNVPVSILEAIKKQ---LLLVVFGLLPHEHKMTVLNFVLQRHPGYEEPLKSKEELIVQCGFRRFDINPLF 598 (754)
T ss_pred CCCceEEEEeecCcHHHHHHHhhc---cceeeeeccchhhhheeeEEEEecCCCCCccccccceeEEEeccceEEecccc
Confidence 699999999999999999999866 89999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCceEEecccCCCceEEEEEEeecCCCCccEEEEEeCCCCCCCeEEEEeEEeccCCcceeEEeEEEEeeeeEEe
Q 003796 636 SSDNMNSDKHKMERFLHAGCFSVASIYAPICFPPLPLIVLKSADGGVAPAVAAVGSLRSIDPDRIILKKIVLTGYPQRVS 715 (795)
Q Consensus 636 S~~~~~~~r~k~~ky~~~~~~~~AtfygPi~~~~t~vl~f~~~~~~~~~ri~atG~vl~~d~~r~IvKklkLtG~P~KI~ 715 (795)
|+ +++|++|||+||+|+.++.+|||||||+|||+|||+|+..++ ++.+++|||+++++||+|+|+||.||+|||||||
T Consensus 599 Ss-~t~ndkhK~eRfl~~~~a~vaTviaPI~F~ps~vL~FK~s~~-~~~~LiAtG~~l~~dpdRiv~KRaVLsGhPfKi~ 676 (754)
T KOG1980|consen 599 SS-HTPNDKHKYERFLPPDEAVVATVIAPITFGPSPVLIFKKSSD-GSLELIATGSLLNCDPDRIVAKRAVLSGHPFKIH 676 (754)
T ss_pred cc-CCccchhhhhhhcCccceEEEEEEeccccCCcceEEEEeCCC-cccceeeeeeeeccCCcceeEeeeeecCCCceee
Confidence 98 889999999999999999999999999999999999999988 7999999999999999999999999999999999
Q ss_pred eeeEEEeecCCChhhccccccceeeecccccceeeCCCCCCceeEEEeccccccccEEEEecceeeccCCCC
Q 003796 716 KLKAIVRYMFHNPEDVRWFKPVEVWTKCGRRGRIKEPVGTHGAMKCVFNGILQQRDTVCMSLYKRAYPKWPE 787 (795)
Q Consensus 716 K~tA~Ir~MF~n~~dV~~Fk~a~L~TksGirG~IK~~lgt~G~fka~Fe~~i~~~D~V~m~lykrv~Pkw~~ 787 (795)
|+.|+|||||||+|||.||||++|+|++||+|||||||||||||||+|++||+.+|+|+|+|||||||+|++
T Consensus 677 kk~v~VRYMFFn~EDV~wFKpIqL~Tk~gR~GhIKEplGTHG~fKc~FdgkLksqDtV~MsLYKRvfP~~~y 748 (754)
T KOG1980|consen 677 KKYVVVRYMFFNREDVEWFKPIQLYTKSGRTGHIKEPLGTHGYFKCYFDGKLKSQDTVMMSLYKRVFPKWTY 748 (754)
T ss_pred eeeEEEeeecCCHhHeeeecceeeeccccccccccccccCcceeEEEecCcccccchHHHHHHHhhcccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999
No 2
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.1e-144 Score=1178.21 Aligned_cols=715 Identities=23% Similarity=0.350 Sum_probs=499.0
Q ss_pred ccccCccccccccchHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCEEEEEecCCCccChhhHHHHHHHhhccCCCCC
Q 003796 32 KSRIGKSDCNVAKGAKAARVQRNKMLRDQKRLALLKEKRASSGIASPPRVIVLFGLSASVNLNSVREDLLRQLSSEGTGA 111 (795)
Q Consensus 32 ~~~ka~~~~~~~~~~K~~Rr~~a~q~r~~Kr~~v~~~~R~~~~~~~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~~ 111 (795)
.|+|||+..+ ..+.+|..++..+..+|++|||+++|++. ..|||+||||||||+++.. .|+..||+.||++....
T Consensus 26 ~naKafavAa---~G~mar~~~rtadi~ekklhVPmvdrtp~-d~PPPfIvavvGPpGtGKs-TLirSlVrr~tk~ti~~ 100 (1077)
T COG5192 26 NNAKAFAVAA---IGQMARQAMRTADIEEKKLHVPMVDRTPK-DLPPPFIVAVVGPPGTGKS-TLIRSLVRRFTKQTIDE 100 (1077)
T ss_pred cchhhhhhhc---hHHHHHHHhhccchhhhccccccccCCcc-cCCCCeEEEeecCCCCChh-HHHHHHHHHHHHhhhhc
Confidence 4688888776 45666666668899999999999999974 6899999999999996653 44444499999988776
Q ss_pred --cceEEEecCceeeEEEEeCCCCChHHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEe
Q 003796 112 --LSSTVSSSKYRLRTSVLQAPHGDLVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLI 189 (795)
Q Consensus 112 --g~~tv~~~r~k~Ritfie~~~~dl~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl 189 (795)
|||||+++ ++|||||+||| +||++|||+|||||||||+|||.|| |||||+||||+|+.||||+|+||+
T Consensus 101 i~GPiTvvsg-K~RRiTflEcp-~Dl~~miDvaKIaDLVlLlIdgnfG--------fEMETmEFLnil~~HGmPrvlgV~ 170 (1077)
T COG5192 101 IRGPITVVSG-KTRRITFLECP-SDLHQMIDVAKIADLVLLLIDGNFG--------FEMETMEFLNILISHGMPRVLGVV 170 (1077)
T ss_pred cCCceEEeec-ceeEEEEEeCh-HHHHHHHhHHHhhheeEEEeccccC--------ceehHHHHHHHHhhcCCCceEEEE
Confidence 99999998 58999999999 9999999999999999999999998 999999999999999999999999
Q ss_pred ccCCcchhh---hHHHHHHHHhhcccccCCCCeeEEeCC-------HHHHHHHHHHHhhccccCcccccCCCeEEEEeeE
Q 003796 190 RDLPTDLKK---RKDLKKMCISSLTSEFPEDCKFYAADT-------KDELHKFLWLFKEQRLTVPHWRNQRPFLMAQKVD 259 (795)
Q Consensus 190 ~~Ld~~~Kk---~~~~kK~lk~~f~~ef~~~~Klf~l~~-------~~E~~nL~R~Is~~k~r~l~WR~~rpYmLadr~e 259 (795)
||||. +|+ .+..||+||||||+|+|+|+|||||++ .+||+||+||||+||+|||.||+.||||||||++
T Consensus 171 ThlDl-fk~~stLr~~KKrlkhRfWtEiyqGaKlFylsgV~nGRYpDreilnLsRfisVMKfRPl~Wrn~HPy~laDR~~ 249 (1077)
T COG5192 171 THLDL-FKNPSTLRSIKKRLKHRFWTEIYQGAKLFYLSGVENGRYPDREILNLSRFISVMKFRPLEWRNMHPYVLADRVD 249 (1077)
T ss_pred eeccc-ccChHHHHHHHHHHhhhHHHHHcCCceEEEecccccCCCCCHHHHHHHHHHhhhcccccccccCCceeehhhhc
Confidence 99997 344 456899999999999999999999994 8999999999999999999999999999999999
Q ss_pred eccCC-----CCCCCceEEEEEEEeCCCCC-CCCeEEeCCCCceeeceeeccCCCCCCCccc------------------
Q 003796 260 VVADD-----CNSGKCTLLLHGYLRAHCLS-VNQLVHISGAGDFQLGKIEILKDPFPLNARK------------------ 315 (795)
Q Consensus 260 ~~~~~-----~~~~~~~l~v~GyvRG~~l~-~n~lVHIpG~GDfqi~~I~~~~dP~p~~~~~------------------ 315 (795)
+.+-+ +..-.+.++|||||+|++|. ...-|||||+|||.+++|+.|+||||-+...
T Consensus 250 Dlt~p~~ieq~~kv~rki~vYGYlhGt~Lp~~d~~vHIpGvGDf~~adve~L~DPcPp~~a~~~rrRrLs~k~KliY~PM 329 (1077)
T COG5192 250 DLTLPVDIEQNPKVGRKITVYGYLHGTGLPRKDMEVHIPGVGDFRMADVEVLIDPCPPPDADHGRRRRLSLKSKLIYSPM 329 (1077)
T ss_pred cccchhhhhhccccCceEEEEEEecCCCCCCCCceEeccCccccchhhhhhcCCCCCCCcccchhhcccchhhceeeccc
Confidence 85321 13447899999999999995 7888999999999999999999999954321
Q ss_pred --------cCCcccccccccceeeeecCCCCCCCcc------------ccccCCCCC-c--cCCCCCCChhhhhhHhhh-
Q 003796 316 --------ESDAMESDEIHDLEVIRTLSPDPLKLEP------------LLVENVPDP-L--AGEQTWPTEAEMAEADQN- 371 (795)
Q Consensus 316 --------~~~~m~~~~~~~~~~~~~l~~~~~~~~~------------L~~e~~~d~-~--~~eqt~pteee~~~~~~~- 371 (795)
|+|+++++- -..+++..+. |+ +..-++ . .+-|.|...+-+.-.+-+
T Consensus 330 sdiGGil~dKD~vyiev---------~~~n~s~~~~~eaGegekm~~~lq-~~eq~~g~dgvglqlFsnsd~~d~~d~e~ 399 (1077)
T COG5192 330 SDIGGILKDKDRVYIEV---------PTSNFSKDENSEAGEGEKMKMQLQ-EIEQDPGVDGVGLQLFSNSDAIDTVDRES 399 (1077)
T ss_pred ccccceeecccceeeec---------cccCcCcCcccccchhhHHHHHHh-hhccCCCcCceeeEEecCCcchhhccccc
Confidence 223333210 0111111111 11 000011 0 233444432222111111
Q ss_pred ----hhhhhcccccCCCCCchhhhccccCCCCcCCCCCCCCccCCcccccc--cCCCCCCCCCCCCCCcc---hhhcc-c
Q 003796 372 ----QKHRKQKKRALPRGTSEYQAAWIVDDSDEADSDSDNDADDGMVLDQE--DRGFPGYEGTNNSDIDD---DQASL-N 441 (795)
Q Consensus 372 ----~~~~~~~k~~vpkg~s~yqa~w~~d~~~~~~~~~~~e~~d~~~~~~~--~~~~~~~~~~~~s~~~~---~~~~~-~ 441 (795)
+..++ .++ -|.|-.--|.---.|+..-++++-. -+|+..+++-. ...++...+ ++.+. |.++. +
T Consensus 400 ~eid~~gr~-t~r-qp~Gk~i~eE~~~~Del~~dd~~~~-~~De~ed~d~~~~~~~~nn~~e---~~~e~~a~dsDSqfd 473 (1077)
T COG5192 400 SEIDNVGRK-TRR-QPTGKAIAEETSREDELSFDDSDVS-TSDENEDVDFTGKKGAINNEDE---SDNEEVAFDSDSQFD 473 (1077)
T ss_pred ccccccccc-ccc-CCCCcchhhhhccccccCccccccc-ccccccccccccccccccCccc---ccchhhccccccccc
Confidence 11111 222 5666311110000111110000000 01111111100 000000000 00000 00000 0
Q ss_pred cCccC---CCCc--------------cccccccCCCCCHHHHHHHHHHHHhh-----------cccCCCCCC---CC--C
Q 003796 442 FRYAD---DGTE--------------NDSVMMEGEILTREQIEDEIKKIKEA-----------HAEDEEFPD---EV--D 488 (795)
Q Consensus 442 ~e~~~---~~~~--------------~~~~~~~~~~~~~e~e~~~~~~~~~~-----------~~ed~~fpD---Ev--d 488 (795)
+++.+ .++. +-...+|++.+++++- +++|+-+ +.++++|=+ +- +
T Consensus 474 ese~~~~w~~~~a~kl~~sqs~kr~~ni~ki~y~e~lspeec---i~e~kge~~~s~e~~~v~~D~~edff~vsk~~n~~ 550 (1077)
T COG5192 474 ESEGNLRWKEGLASKLAYSQSGKRGRNIQKIFYDESLSPEEC---IEEYKGESAKSSESDLVVQDEPEDFFDVSKVANES 550 (1077)
T ss_pred cccccchhhhhhhhhhhhhhcccccccccceeccccCCHHHH---HHHhccccccccccccccccCchhhhhhhhhcccc
Confidence 00000 0000 0001246666666652 2222211 011111111 00 0
Q ss_pred CCCC-------c------------hHHHHHHHHhcccccc----------CCCCCC---CCCC-----------------
Q 003796 489 TPLD-------V------------PARKRFAKYRGLKSFR----------TSSWDP---KESL----------------- 519 (795)
Q Consensus 489 tp~d-------~------------~ar~Rf~kyRgLkSfr----------ts~Wd~---~E~l----------------- 519 (795)
...| . ...+||++---|.|.- .+++.. +||-
T Consensus 551 ~s~~~ek~~~~~fe~L~kkw~s~~~lk~RF~~~~~lds~eg~EEl~qd~E~gn~ed~~d~e~~~d~e~ees~G~s~t~~~ 630 (1077)
T COG5192 551 ISSNHEKLMESEFEELKKKWSSLAQLKSRFQKDATLDSIEGEEELIQDDEKGNFEDLEDEENSSDNEMEESRGSSVTAEN 630 (1077)
T ss_pred cccchhhhchhHHHHHHHHHhhHHHHHHHhhcccccccccchhhhhhchhccCcccccccccccccchhhccCCcccccc
Confidence 0000 0 0112222211111110 000000 0000
Q ss_pred -----chHHh--h----------hhchh--c-----------HHHHHHHHHHH-------Hhhhhc--cccCCCCCCCcE
Q 003796 520 -----PPEYA--R----------IFAFD--K-----------FTRTQKHVFAN-------ALKMEQ--ENMDDSVPASLY 560 (795)
Q Consensus 520 -----p~~y~--r----------i~~f~--~-----------~~~~~k~~~~~-------~~~~~~--~~~~~g~~~G~y 560 (795)
-.+|. | -.+|+ . |...++++-++ +++|+. +..++|+++|.|
T Consensus 631 ~e~~~e~~~e~ErE~na~kKE~lr~~Fe~eer~d~e~~d~dwy~~eK~ki~~ql~inr~e~e~M~Pe~r~~Ieg~raG~Y 710 (1077)
T COG5192 631 EESADEVDYETEREENARKKEELRGNFELEERGDPEKKDVDWYTEEKRKIEEQLKINRSEFETMVPESRVVIEGYRAGRY 710 (1077)
T ss_pred hhhccccchHHHhhhhhhhhhhhhcceeehhccCccccccchHHHHHHHHHHHHhhhhhhhhhcCCcceeEeecccccce
Confidence 00010 0 00111 1 22223333222 233333 456899999999
Q ss_pred EEEEEecCchhHHhhhccccCCCcEEEEecccccceeeEEEEEEEecCCCcccCCCCCeEEEEeeeeeeeeeeeeccCCC
Q 003796 561 VRLHIKEVPAGIAHRLCEMAERSPLIASGLLQHESKMSVLHFSVKKHDTYDAPIKAKEELIFHVGFRQFVARPIFSSDNM 640 (795)
Q Consensus 561 Vri~i~~vp~~~~~~~~~~~~~~Plil~gLl~~E~k~svv~~~ikrh~~~~~~lKSkdpLi~s~GwRRFq~~PifS~~~~ 640 (795)
|||+|+.||.+|+++|++. +|+|+|||||.|.+||+|+.+|+|||||+++||++||||||+||||||++||||+.|.
T Consensus 711 Vriv~~~vP~efv~~fn~r---~piV~GGlLp~E~~~giVq~rikrhrWhKKILKTNdPlifS~GWRRFQsiPvys~~Ds 787 (1077)
T COG5192 711 VRIVLSHVPLEFVDEFNSR---YPIVLGGLLPAEKEMGIVQGRIKRHRWHKKILKTNDPLIFSVGWRRFQSIPVYSMKDS 787 (1077)
T ss_pred EEEEeccCCHHHHhhcCCC---CcEEeccccchhhhhhhhhhHHHHhHHHHHHhccCCCeEEEechhhhcccceeeecch
Confidence 9999999999999999998 9999999999999999999999999999999999999999999999999999999664
Q ss_pred CCCceEEecccCCCceEEEEEEeecCCCCccEEEEEeCCCCCCCeEEEEeEEeccCCcceeEEeEEEEeeeeEEeeeeEE
Q 003796 641 NSDKHKMERFLHAGCFSVASIYAPICFPPLPLIVLKSADGGVAPAVAAVGSLRSIDPDRIILKKIVLTGYPQRVSKLKAI 720 (795)
Q Consensus 641 ~~~r~k~~ky~~~~~~~~AtfygPi~~~~t~vl~f~~~~~~~~~ri~atG~vl~~d~~r~IvKklkLtG~P~KI~K~tA~ 720 (795)
.+|+||+||||+||||.+|||||+++||||||++|+.. +.|||+|+|+|.++|.+..|||||||+|||++|++||||
T Consensus 788 -rTRnRMlKYTPEhmhCn~sFYGP~v~pntgFc~Vqse~--g~frv~a~g~i~dv~~~~~lvkklklvg~p~qi~qnt~f 864 (1077)
T COG5192 788 -RTRNRMLKYTPEHMHCNVSFYGPVVPPNTGFCAVQSEK--GDFRVLALGTITDVNGDAKLVKKLKLVGYPKQIVQNTVF 864 (1077)
T ss_pred -hhhhhhhhcCccceeeeeeeecCccCCCCCceeEEecC--CceEEEEeeeeEeccccHHHHhhhhhccCcHHHhhhhHh
Confidence 47999999999999999999999999999999999864 679999999999999999999999999999999999999
Q ss_pred EeecCCChhhccccccceeeecccccceeeCCCCCCceeEEEeccccccccEEEEecceeeccCCCC
Q 003796 721 VRYMFHNPEDVRWFKPVEVWTKCGRRGRIKEPVGTHGAMKCVFNGILQQRDTVCMSLYKRAYPKWPE 787 (795)
Q Consensus 721 Ir~MF~n~~dV~~Fk~a~L~TksGirG~IK~~lgt~G~fka~Fe~~i~~~D~V~m~lykrv~Pkw~~ 787 (795)
||+||+|.+||++|+||+|+||||+||+||.|+|.+|++||.|+++|+|||||.||+|.+|--+-++
T Consensus 865 vrdmfts~lev~kfega~lk~vsglrgqvk~~~~k~g~yra~fe~kmlmsdii~lr~~~pv~v~r~~ 931 (1077)
T COG5192 865 VRDMFTSDLEVLKFEGASLKAVSGLRGQVKGPHGKNGEYRAVFEGKMLMSDIITLRCFVPVEVHRIF 931 (1077)
T ss_pred HHHhhhhhhHHHhhcccceeeeccccccccCccCCCccchheeccchhhhheeeEEeeeeeEEEEee
Confidence 9999999999999999999999999999999999999999999999999999999999888655444
No 3
>COG5177 Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=4.5e-138 Score=1113.99 Aligned_cols=727 Identities=26% Similarity=0.400 Sum_probs=586.0
Q ss_pred CcccCCCCCCCCCCChhhhhhhhhhcCCcccc-CccccccccchHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCEEE
Q 003796 4 SRVQVNKSHKSRFSTKSSRNLHKTAAKDKSRI-GKSDCNVAKGAKAARVQRNKMLRDQKRLALLKEKRASSGIASPPRVI 82 (795)
Q Consensus 4 ~~kq~nK~hK~r~~sK~~~k~~~~~kg~~~~k-a~~~~~~~~~~K~~Rr~~a~q~r~~Kr~~v~~~~R~~~~~~~pP~iV 82 (795)
+|| .||+||++|+|||++|+ +.||++++- ..+.+..++++|++|||+|+|++.+++..+.+.+|.++|.++||.||
T Consensus 8 s~k-~~k~ykskhask~alk~--~yk~kve~~~~g~~~~~~~~~k~dRrN~aKq~~~~~i~~~~en~~~f~gknGa~kvI 84 (769)
T COG5177 8 SLK-GHKSYKSKHASKGALKR--LYKGKVEKEPVGTGKPDKQMKKRDRRNRAKQKSIGSIARIKENKLPFSGKNGAYKVI 84 (769)
T ss_pred hhc-cCCcccccccchhHHHH--HhcCCccccCCCCCCchhhhHHhhhhhhHHHhhhhHHHHHHhhcCcccCCCCCceEE
Confidence 566 88999999999999998 999998864 34566678999999999999999999999999999999999999999
Q ss_pred EEecCCCccChhhHHHHHHHhhccCCCCC---------cceEEEecCceeeEEEEeCCCCChHHHHHHHhhhceEEEeee
Q 003796 83 VLFGLSASVNLNSVREDLLRQLSSEGTGA---------LSSTVSSSKYRLRTSVLQAPHGDLVGCMEMAKVADLVAFVAS 153 (795)
Q Consensus 83 ~Vvg~~~~~~~~sl~~~lvk~~~~~~~~~---------g~~tv~~~r~k~Ritfie~~~~dl~~~LD~aKvADlVll~id 153 (795)
+||||+..++...+. -+++...+.+. -.+.+.+.+||+++.|+.|..-++.+++|+|||||+|+|+++
T Consensus 85 tIVpL~n~~d~~dil---~klL~~~d~e~~m~q~~~~~~~ys~~i~~fK~Nllf~~pd~~~f~~l~d~ckVsD~VvF~ls 161 (769)
T COG5177 85 TIVPLGNECDGYDIL---DKLLHGNDDEGIMVQEVDGGLFYSVHIEEFKMNLLFKRPDELSFFQLGDVCKVSDIVVFGLS 161 (769)
T ss_pred EEeecccccchHHHH---HHHHccCCcccccceeccCceEEeeeHHHhhcceeEeccchhhhhhhhhhheeccEEEEEec
Confidence 999999999987772 33443333221 235566789999999999987779999999999999999999
Q ss_pred CCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc--chhhhHHHHHHHHhhcccccCCCCeeEEeCCHHHHHH
Q 003796 154 ASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT--DLKKRKDLKKMCISSLTSEFPEDCKFYAADTKDELHK 231 (795)
Q Consensus 154 as~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~--~~Kk~~~~kK~lk~~f~~ef~~~~Klf~l~~~~E~~n 231 (795)
+. +++|+.|+.+.+.|+.||+.++|+++..|.. ..|.+..+|++|++++.++||+..++|.++..+|++|
T Consensus 162 ~v--------qEVDefge~i~r~l~~qgI~s~i~~~~~ls~v~s~k~~~~vKqslesf~~~fFp~~ERV~~~~~~~DALn 233 (769)
T COG5177 162 DV--------QEVDEFGEQIGRKLKLQGIKSFIPSCLFLSSVQSEKRDAAVKQSLESFVRRFFPSKERVVEIGGLMDALN 233 (769)
T ss_pred ch--------hhhhHHHHHHHHHHHhhhHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHhCCchhheeeccccHHHHH
Confidence 98 5699999999999999999999999655542 2377889999999999999999999999999999999
Q ss_pred HHHHHhhccccCcccccCCCeEEEEeeEeccCCCCCCCceEEEEEEEeCCCCCCCCeEEeCCCCceeeceeeccCCCCCC
Q 003796 232 FLWLFKEQRLTVPHWRNQRPFLMAQKVDVVADDCNSGKCTLLLHGYLRAHCLSVNQLVHISGAGDFQLGKIEILKDPFPL 311 (795)
Q Consensus 232 L~R~Is~~k~r~l~WR~~rpYmLadr~e~~~~~~~~~~~~l~v~GyvRG~~l~~n~lVHIpG~GDfqi~~I~~~~dP~p~ 311 (795)
.+|.+|+.-||.|.||++|||+|+....+. +|.|.+.|.|||.+|++|+|+||||+|||++.+|...+.-
T Consensus 234 v~R~lcts~pR~i~wrdnR~Yiv~~e~sys-------~G~l~~~g~VrG~g~n~nrL~Hi~~fgdF~~nkI~~~~q~--- 303 (769)
T COG5177 234 VVRILCTSVPRSINWRDNRPYIVPSEASYS-------DGELFYEGTVRGIGFNANRLKHIPDFGDFLSNKIIVNGQY--- 303 (769)
T ss_pred HHHHHhccCCcccccccCCceeeecccccC-------CCceEEEEEeeccccCchheeecCccchhhhheeeeccch---
Confidence 999999999999999999999999665543 5899999999999999999999999999999999887531
Q ss_pred CccccCCcccccc--cccceeeeecCCCCCCCccccccCCCCCccCCCCCCC-hhhhhhH-------------hhhhhhh
Q 003796 312 NARKESDAMESDE--IHDLEVIRTLSPDPLKLEPLLVENVPDPLAGEQTWPT-EAEMAEA-------------DQNQKHR 375 (795)
Q Consensus 312 ~~~~~~~~m~~~~--~~~~~~~~~l~~~~~~~~~L~~e~~~d~~~~eqt~pt-eee~~~~-------------~~~~~~~ 375 (795)
.+.....-.|. .-...+..++.++ ..|++|.. ..|. ++..|.. +++.+.+ +.+.+..
T Consensus 304 --~q~~r~I~~d~at~l~~~l~~v~~~~-~~rdtld~-~~p~---g~d~~sd~d~d~~~d~~~~vr~Dd~~f~~~~eq~~ 376 (769)
T COG5177 304 --EQTIREIFADRATKLELDLQTVFESN-MNRDTLDE-YAPE---GEDLRSDYDEDFEYDGLTTVRIDDHGFLPGREQTS 376 (769)
T ss_pred --hhhHHHHhhhhccccccchhhhcccc-ccccchhh-cCCc---cccchhhhhhhhcccccceeEecccccCCcccccc
Confidence 11100000111 0011112222322 33445542 2221 2333422 1222211 0011111
Q ss_pred hcccccCCCCCchhhhccccCCCCcCCCCCCCCccCCcccccccCCCCCCCCCCCCCCcchhhccccCccCCCCcccccc
Q 003796 376 KQKKRALPRGTSEYQAAWIVDDSDEADSDSDNDADDGMVLDQEDRGFPGYEGTNNSDIDDDQASLNFRYADDGTENDSVM 455 (795)
Q Consensus 376 ~~~k~~vpkg~s~yqa~w~~d~~~~~~~~~~~e~~d~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~e~~~~~~~~~~~~ 455 (795)
+ +-+||||||.|||.|+.|++.+++...+.| +-.+.+++++....+ +++++ ++++ .++.++++
T Consensus 377 ~--~aavpkGts~yqa~w~~deeee~~q~nd~e-~tm~~idd~d~~E~d-----neev~----~DeE-----~~idDne~ 439 (769)
T COG5177 377 K--KAAVPKGTSFYQAKWAEDEEEEDGQCNDEE-STMSAIDDDDPKEND-----NEEVA----GDEE-----SAIDDNEG 439 (769)
T ss_pred h--hhccCCCCcccceeecccchhhccccCchh-hhhhhhcccCchhcc-----ccccc----Cchh-----hccccccc
Confidence 1 112999999999999998654433221111 111111111000000 00000 0011 11112232
Q ss_pred ccCCCCCHHHHHHHHHHHHhhcccCCCCCCCCCCCCCchHHHHHHHHhccccccCCCCCCCC---CCchHHhhhhchhcH
Q 003796 456 MEGEILTREQIEDEIKKIKEAHAEDEEFPDEVDTPLDVPARKRFAKYRGLKSFRTSSWDPKE---SLPPEYARIFAFDKF 532 (795)
Q Consensus 456 ~~~~~~~~e~e~~~~~~~~~~~~ed~~fpDEvdtp~d~~ar~Rf~kyRgLkSfrts~Wd~~E---~lp~~y~ri~~f~~~ 532 (795)
.+++++|||.+|++++|..++||.+||||+++.+...|++||.+||||+++-||.|+..| +.|.+|.+++.|+||
T Consensus 440 --f~els~eee~rq~~efr~~eked~efpde~elqPse~aier~k~YRGlrnLytc~w~~de~dps~P~ewk~L~~f~ny 517 (769)
T COG5177 440 --FEELSPEEEERQLREFRDMEKEDREFPDEAELQPSESAIERYKEYRGLRNLYTCSWRSDEKDPSFPEEWKSLVFFDNY 517 (769)
T ss_pred --chhcChHHHHHHHHHHHhhhhhhccCchhhccCccHHHHHHHHHhcccccccccccccccCCCCChHHHhhheeccch
Confidence 378999999999999999779999999999999999999999999999999999999766 579999999999999
Q ss_pred HHHHHHHHHHHhhhhccccCCCCCCCcEEEEEEecCchhHHhhhccccCCCcEEEEecccccceeeEEEEEEEecCCCcc
Q 003796 533 TRTQKHVFANALKMEQENMDDSVPASLYVRLHIKEVPAGIAHRLCEMAERSPLIASGLLQHESKMSVLHFSVKKHDTYDA 612 (795)
Q Consensus 533 ~~~~k~~~~~~~~~~~~~~~~g~~~G~yVri~i~~vp~~~~~~~~~~~~~~Plil~gLl~~E~k~svv~~~ikrh~~~~~ 612 (795)
++++++++++--+ ....+|+.|||.|+ +|..+++.+... ..-|+|+|||.||+|.+|.||+++||..|++
T Consensus 518 rn~kn~~vk~~~~-------~~a~~G~~vri~lr-~p~~l~E~~~~p--~~llvvygll~yE~k~tV~nFs~~rh~eye~ 587 (769)
T COG5177 518 RNAKNLVVKKDNE-------SVAPDGQMVRIKLR-FPKFLYEGLIEP--QILLVVYGLLEYEDKKTVHNFSLQRHFEYEV 587 (769)
T ss_pred hhhhhheecCCcc-------ccCCCCcEEEEEEe-ccHHHHhhhccc--ceeeeeeehhhhcchhhhhhhhhhhhhcccC
Confidence 9999999875421 34789999999998 999999998755 2567789999999999999999999999999
Q ss_pred cCCCCCeEEEEeeeeeeeeeeeeccC-CCCCCceEEecccCCCceEEEEEEeecCCCCccEEEEEeCCCC-CCCeEEEEe
Q 003796 613 PIKAKEELIFHVGFRQFVARPIFSSD-NMNSDKHKMERFLHAGCFSVASIYAPICFPPLPLIVLKSADGG-VAPAVAAVG 690 (795)
Q Consensus 613 ~lKSkdpLi~s~GwRRFq~~PifS~~-~~~~~r~k~~ky~~~~~~~~AtfygPi~~~~t~vl~f~~~~~~-~~~ri~atG 690 (795)
||+|+++|++|+|.|||.++|+||+. +..|+-|||.||+|+....||||+|||.|++.|+|+|+..... .+.+++|||
T Consensus 588 P~~s~E~~vvq~G~rr~~i~Pl~s~~s~s~Nn~qKy~r~l~p~~~~vas~I~Pi~Fg~spvi~fkkS~~d~~s~~l~a~g 667 (769)
T COG5177 588 PLKSEESMVVQLGHRRVDICPLISKGSNSPNNNQKYFRRLKPLESGVASFIGPISFGLSPVIIFKKSALDELSATLLASG 667 (769)
T ss_pred CCCcccceeeeeccceEEEeehhccCCCCCcchHHHHhhcCccceeeeEEEcceeccCcceEEEccCccchhhhhhhhcc
Confidence 99999999999999999999999983 3446799999999999999999999999999999999987432 689999999
Q ss_pred EEeccCCcceeEEeEEEEeeeeEEeeeeEEEeecCCChhhccccccceeeecccccceeeCCCCCCceeEEEeccccccc
Q 003796 691 SLRSIDPDRIILKKIVLTGYPQRVSKLKAIVRYMFHNPEDVRWFKPVEVWTKCGRRGRIKEPVGTHGAMKCVFNGILQQR 770 (795)
Q Consensus 691 ~vl~~d~~r~IvKklkLtG~P~KI~K~tA~Ir~MF~n~~dV~~Fk~a~L~TksGirG~IK~~lgt~G~fka~Fe~~i~~~ 770 (795)
+.+++|++|+|+||.+|||||||+||+.++||||||||+||.||++++|+|++||.|.|||||||||||||||+++|+.+
T Consensus 668 ~~~n~d~~rviakrAvLtGhPFk~hK~~vtvryMFf~pEdV~wFk~Iqlftk~grtGfIKeplGThGyFKatF~gki~~q 747 (769)
T COG5177 668 GMNNFDGDRVIAKRAVLTGHPFKNHKRYVTVRYMFFSPEDVMWFKNIQLFTKRGRTGFIKEPLGTHGYFKATFSGKIKSQ 747 (769)
T ss_pred cccccCcchhhhhhhhhcCCCcccceeEEEEeeecCCHhHeeeecchhhhhhcCccceecccccCcceeeEEecCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEecceeeccCCCCCCCC
Q 003796 771 DTVCMSLYKRAYPKWPEHRFP 791 (795)
Q Consensus 771 D~V~m~lykrv~Pkw~~~~~~ 791 (795)
|+|.|+||||+||-- ..||+
T Consensus 748 D~VaMSLYKRm~p~p-~~~~~ 767 (769)
T COG5177 748 DKVAMSLYKRMFPEP-QLPWN 767 (769)
T ss_pred chhhHHHHHHhccCc-ccccC
Confidence 999999999999963 34554
No 4
>PF04950 DUF663: Protein of unknown function (DUF663); InterPro: IPR007034 This domain is found at the C terminus of the ribosome biogenesis protein BMS1 and TSR1 families, which may act as a molecular switch during maturation of the 40S ribosomal subunit in the nucleolus.; PDB: 1WB1_D 1WB3_B 1WB2_A.
Probab=100.00 E-value=5.5e-108 Score=876.50 Aligned_cols=292 Identities=50% Similarity=0.879 Sum_probs=78.4
Q ss_pred CCCCCCCchHHHHHHHHhccccccCCCCCCCC---CCchHHhhhhchhcHHHHHHHHHHHH-hhhhccccCCCCCCCcEE
Q 003796 486 EVDTPLDVPARKRFAKYRGLKSFRTSSWDPKE---SLPPEYARIFAFDKFTRTQKHVFANA-LKMEQENMDDSVPASLYV 561 (795)
Q Consensus 486 Evdtp~d~~ar~Rf~kyRgLkSfrts~Wd~~E---~lp~~y~ri~~f~~~~~~~k~~~~~~-~~~~~~~~~~g~~~G~yV 561 (795)
|||||.|++||+||+|||||||||||+||++| +||.+|+|||+|+||+++++++++++ .+.+.+.+.+|+.||+||
T Consensus 1 Evdt~~~~~ar~Rf~KyRgLKs~r~s~wD~~E~~~~lP~~y~ri~~f~n~~~~k~~~~~~~~~~~~~~~~~~g~~~G~YV 80 (297)
T PF04950_consen 1 EVDTPPDEPARERFQKYRGLKSFRTSEWDPDEKDPNLPEDYSRIFQFENFKRTKKRALKEAELDEEEREQEEGVRPGTYV 80 (297)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 79999999999999999999999999999999 99999999999999999999998875 222224456899999999
Q ss_pred EEEEecCchhHHhhhccccCCCcEEEEecccccceeeEEEEEEEecCCCcccCCCCCeEEEEeeeeeeeeeeeeccCCCC
Q 003796 562 RLHIKEVPAGIAHRLCEMAERSPLIASGLLQHESKMSVLHFSVKKHDTYDAPIKAKEELIFHVGFRQFVARPIFSSDNMN 641 (795)
Q Consensus 562 ri~i~~vp~~~~~~~~~~~~~~Plil~gLl~~E~k~svv~~~ikrh~~~~~~lKSkdpLi~s~GwRRFq~~PifS~~~~~ 641 (795)
+|+|++||++++++|++. +||||||||+||+|+||||++|+||+||++|||||||||||||||||||+||||+ +++
T Consensus 81 rI~i~~vP~~~~~~~~~~---~Plil~gLl~~E~k~svv~~~ikrh~~~~~~lkSkd~li~~~G~Rrf~~~Pifs~-~~~ 156 (297)
T PF04950_consen 81 RIEISNVPCEFVENFDPS---YPLILGGLLPHEQKMSVVNFRIKRHRWYEKPLKSKDPLIFSCGWRRFQTIPIFSQ-EDN 156 (297)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccc---ccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccc
Confidence 999999999999999998 9999999999999999999999999999999999999999999999999999999 556
Q ss_pred CCceEEecccCCCceEEEEEEeecCCCCccEEEEEeCCCCC-CCeEEEEeEEeccCCcceeEEeEEEEeeeeEEeeeeEE
Q 003796 642 SDKHKMERFLHAGCFSVASIYAPICFPPLPLIVLKSADGGV-APAVAAVGSLRSIDPDRIILKKIVLTGYPQRVSKLKAI 720 (795)
Q Consensus 642 ~~r~k~~ky~~~~~~~~AtfygPi~~~~t~vl~f~~~~~~~-~~ri~atG~vl~~d~~r~IvKklkLtG~P~KI~K~tA~ 720 (795)
++||||+||||+|+||+||||||++|||||||+|++.++.+ +|||+|||+|+++||+++|+|||+|+||||||||||||
T Consensus 157 ~~r~k~~k~~~~~~~~~at~ygPi~~~~~~vl~f~~~~~~~~~~~l~atG~v~~~d~~~~i~Kki~L~G~P~ki~k~~a~ 236 (297)
T PF04950_consen 157 NNRHKYEKYLPEGMHCVATFYGPITFPPTPVLAFKESSNSGSSFRLVATGSVLNVDPDRIIVKKIKLTGYPFKIHKRTAV 236 (297)
T ss_dssp ---------------------------------------TTTSS-B-EEEEEEEE--GGGS-B--EEEEEEEEEESSSCE
T ss_pred ccccccccccccccccccccccccccccccccccccccccCCCceEEEeeeEeCCCCcchhheeeeecCchheEECceEE
Confidence 78999999999999999999999999999999999964433 79999999999999999999999999999999999999
Q ss_pred EeecCCChhhccccccceeeecccccceeeCCCCCCceeEEEeccccccccEEEEecceee
Q 003796 721 VRYMFHNPEDVRWFKPVEVWTKCGRRGRIKEPVGTHGAMKCVFNGILQQRDTVCMSLYKRA 781 (795)
Q Consensus 721 Ir~MF~n~~dV~~Fk~a~L~TksGirG~IK~~lgt~G~fka~Fe~~i~~~D~V~m~lykrv 781 (795)
|||||||++||+||+||+|+||||||||||+||||||+|||+||++|+|+|||||+|||||
T Consensus 237 vr~MF~~~~dv~~F~~~~l~T~~G~rG~Ik~~lgt~G~fka~F~~~i~~~D~V~~~lykrV 297 (297)
T PF04950_consen 237 VRGMFFNPEDVAWFKGAELRTKSGIRGHIKESLGTHGYFKATFEDKIKQSDIVFMRLYKRV 297 (297)
T ss_dssp ECSSSSTCCHHHHS-S--BEETTS-BEEEEE-BTTTTBBEEEESS---SS-EEEEE-----
T ss_pred hhhhcCCHHHHHhhcCCEEEeeccCCCEECeeECCCCcEEEEECCcCCCCCEEEEecCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999998
No 5
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.98 E-value=2.1e-31 Score=277.42 Aligned_cols=206 Identities=20% Similarity=0.338 Sum_probs=179.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCEEEEEecCCCccChhhHHHHHHHhhccCCCC--CcceEEEecCce
Q 003796 45 GAKAARVQRNKMLRDQKRLALLKEKRASSGIASPPRVIVLFGLSASVNLNSVREDLLRQLSSEGTG--ALSSTVSSSKYR 122 (795)
Q Consensus 45 ~~K~~Rr~~a~q~r~~Kr~~v~~~~R~~~~~~~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~--~g~~tv~~~r~k 122 (795)
+-.++||||++|+|++||++++..+|. +...||++|+|+|+++++. .+|++.|+..+...... .|++++..+ ..
T Consensus 7 ~~~~~r~~~~~~~~~~k~~~~~~~~r~--~~~~~~~~i~ivG~~~~GK-stl~~~l~~~~~~~~~~~~~g~i~i~~~-~~ 82 (225)
T cd01882 7 AVAAARQFQRTADIEEKKLHVPVVDRT--PEEPPPLVVAVVGPPGVGK-TTLIKSLVKNYTKQNISDIKGPITVVTG-KK 82 (225)
T ss_pred chHHHHHHHHHHHhhhccccceeeccc--cccCCCCEEEEECCCCCCH-HHHHHHHHhhcccCccccccccEEEEec-CC
Confidence 456789999999999999999999997 4589999999999999864 46756656654433322 288888876 47
Q ss_pred eeEEEEeCCCCChHHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc--chhhhH
Q 003796 123 LRTSVLQAPHGDLVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT--DLKKRK 200 (795)
Q Consensus 123 ~Ritfie~~~~dl~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~--~~Kk~~ 200 (795)
++++|+.|| +++..++++++.||+||||+|++.| +++++.+++++++.+|+|.+++|++.+|. +.++..
T Consensus 83 ~~i~~vDtP-g~~~~~l~~ak~aDvVllviDa~~~--------~~~~~~~i~~~l~~~g~p~vi~VvnK~D~~~~~~~~~ 153 (225)
T cd01882 83 RRLTFIECP-NDINAMIDIAKVADLVLLLIDASFG--------FEMETFEFLNILQVHGFPRVMGVLTHLDLFKKNKTLR 153 (225)
T ss_pred ceEEEEeCC-chHHHHHHHHHhcCEEEEEEecCcC--------CCHHHHHHHHHHHHcCCCeEEEEEeccccCCcHHHHH
Confidence 999999999 9999999999999999999999954 78889999999999999999999999995 334456
Q ss_pred HHHHHHHhhcccccCCCCeeEEeC-------CHHHHHHHHHHHhhccccCcccccCCCeEEEEeeEeccC
Q 003796 201 DLKKMCISSLTSEFPEDCKFYAAD-------TKDELHKFLWLFKEQRLTVPHWRNQRPFLMAQKVDVVAD 263 (795)
Q Consensus 201 ~~kK~lk~~f~~ef~~~~Klf~l~-------~~~E~~nL~R~Is~~k~r~l~WR~~rpYmLadr~e~~~~ 263 (795)
++++.|+++|++++..++|+|++| +.+|+.|++|.|+++++++++||+.|||||||+++|+++
T Consensus 154 ~~~~~l~~~~~~~~~~~~ki~~iSa~~~~~~~~~e~~~~~r~i~~~~~~~~~~r~~r~y~~~~~~~~~~~ 223 (225)
T cd01882 154 KTKKRLKHRFWTEVYQGAKLFYLSGIVHGRYPKTEIHNLARFISVMKFRPLNWRNSHPYVLADRMEDITN 223 (225)
T ss_pred HHHHHHHHHHHHhhCCCCcEEEEeeccCCCCCHHHHHHHHHHHHhCCCCCCeeecCCCeEEEeeeecccC
Confidence 788999998988877799999999 899999999999999999999999999999999999764
No 6
>smart00785 AARP2CN AARP2CN (NUC121) domain. This domain is the central domain of AARP2. It is weakly similar to the GTP-binding domain of elongation factor TU PUBMED:15112237.
Probab=99.98 E-value=1.6e-32 Score=240.86 Aligned_cols=82 Identities=39% Similarity=0.699 Sum_probs=76.9
Q ss_pred HHHHHHHHHhhccccCcccccCCCeEEEEeeEeccCCC-CCCCceEEEEEEEeCCCCCCCCeEEeCCCCceeeceeeccC
Q 003796 228 ELHKFLWLFKEQRLTVPHWRNQRPFLMAQKVDVVADDC-NSGKCTLLLHGYLRAHCLSVNQLVHISGAGDFQLGKIEILK 306 (795)
Q Consensus 228 E~~nL~R~Is~~k~r~l~WR~~rpYmLadr~e~~~~~~-~~~~~~l~v~GyvRG~~l~~n~lVHIpG~GDfqi~~I~~~~ 306 (795)
|++||+|+||+||+++++||++|||||||++++.++.. .+++++|+|||||||++|++|++|||||+|||||++|+.++
T Consensus 1 e~~nL~R~i~~~k~~~l~WR~~rpY~lad~~e~~~~~~~~~~~~~l~v~GyvRG~~l~~n~lVHIpG~GDfqi~~I~~~~ 80 (83)
T smart00785 1 EILNLLRFLSVMKPRPLSWRDQHPYMLADRVEDITDEEDPKVDRTLVVYGYVRGTGLNANQLVHIPGLGDFQISKIEALP 80 (83)
T ss_pred CHHHHHHHHHhccCCCCcccCCCCeEEEEEeEecCCCCCCccCcEEEEEEEEcCCCCCCCCEEEeCCcCCeEeeEEeecC
Confidence 68999999999999999999999999999999986632 34578999999999999999999999999999999999999
Q ss_pred CCC
Q 003796 307 DPF 309 (795)
Q Consensus 307 dP~ 309 (795)
|||
T Consensus 81 dP~ 83 (83)
T smart00785 81 DPC 83 (83)
T ss_pred CCC
Confidence 998
No 7
>PF08142 AARP2CN: AARP2CN (NUC121) domain; InterPro: IPR012948 This domain is the central domain of AARP2 (asparagine and aspartate rich protein 2). It is weakly similar to the GTP-binding domain of elongation factor TU []. PfAARP2 is an antigen from Plasmodium falciparum of 150 kDa, which is encoded by a unique gene on chromosome 1 []. The central region of Pfaarp2 contains blocks of repetitions encoding asparagine and aspartate residues. ; GO: 0042254 ribosome biogenesis, 0005634 nucleus
Probab=99.97 E-value=5.1e-32 Score=239.03 Aligned_cols=82 Identities=45% Similarity=0.750 Sum_probs=76.3
Q ss_pred HHHHHHHHHhhccccCcccccCCCeEEEEeeEeccCCCC---CCCceEEEEEEEeCCCCCCCCeEEeCCCCceeeceeec
Q 003796 228 ELHKFLWLFKEQRLTVPHWRNQRPFLMAQKVDVVADDCN---SGKCTLLLHGYLRAHCLSVNQLVHISGAGDFQLGKIEI 304 (795)
Q Consensus 228 E~~nL~R~Is~~k~r~l~WR~~rpYmLadr~e~~~~~~~---~~~~~l~v~GyvRG~~l~~n~lVHIpG~GDfqi~~I~~ 304 (795)
|++||+|+||++|+++++||++|||||||++++.++++. +++++|+|||||||.+|++|++|||||+|||||++|+.
T Consensus 1 e~~nl~R~i~~~k~~~i~WR~~r~y~lad~~e~~~~~~~~~~~~~~~l~v~GyvRG~~l~~n~lVHIpG~GDFqi~~I~~ 80 (85)
T PF08142_consen 1 EILNLLRFISVQKPRPISWRDQRPYMLADRVEFVPDPEDESENEDGTLKVYGYVRGSPLSVNQLVHIPGVGDFQISKIES 80 (85)
T ss_pred CHHHHHHHHHhCccCCCccccCCCeEEEEEEEecCCccccccCCceEEEEEEEEccccccCCCEEEeCCcCCeEeeEeee
Confidence 689999999999999999999999999999999876432 22579999999999999999999999999999999999
Q ss_pred cCCCC
Q 003796 305 LKDPF 309 (795)
Q Consensus 305 ~~dP~ 309 (795)
++|||
T Consensus 81 ~~DPc 85 (85)
T PF08142_consen 81 LPDPC 85 (85)
T ss_pred cCCCC
Confidence 99999
No 8
>PRK12735 elongation factor Tu; Reviewed
Probab=98.58 E-value=6e-06 Score=93.56 Aligned_cols=214 Identities=12% Similarity=0.121 Sum_probs=140.8
Q ss_pred CCCCCEEEEEecCCCccChhhHHHHHHHhhcc-----------CCC--CC--cceEEEe-----cCceeeEEEEeCCCCC
Q 003796 75 IASPPRVIVLFGLSASVNLNSVREDLLRQLSS-----------EGT--GA--LSSTVSS-----SKYRLRTSVLQAPHGD 134 (795)
Q Consensus 75 ~~~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~-----------~~~--~~--g~~tv~~-----~r~k~Ritfie~~~~d 134 (795)
...|.+.|+|+|-.+.+.. +|++.|+..... .+. .+ .-+|+.+ ...+..++|+.+| .-
T Consensus 8 ~~~~~~~i~iiGhvd~GKS-TL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtP-Gh 85 (396)
T PRK12735 8 RTKPHVNVGTIGHVDHGKT-TLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCP-GH 85 (396)
T ss_pred CCCCeEEEEEECcCCCCHH-HHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECC-CH
Confidence 4567777999999887764 665554542110 110 11 2223321 1224678999998 52
Q ss_pred ---hHHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc-chhhh-HHHHHHHHhh
Q 003796 135 ---LVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT-DLKKR-KDLKKMCISS 209 (795)
Q Consensus 135 ---l~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~-~~Kk~-~~~kK~lk~~ 209 (795)
+..|+..+..||.+|||+|+..| +...+.+.|..+...|+|.++.|++.+|. +.... ..+++.++.+
T Consensus 86 ~~f~~~~~~~~~~aD~~llVvda~~g--------~~~qt~e~l~~~~~~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~ 157 (396)
T PRK12735 86 ADYVKNMITGAAQMDGAILVVSAADG--------PMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVREL 157 (396)
T ss_pred HHHHHHHHhhhccCCEEEEEEECCCC--------CchhHHHHHHHHHHcCCCeEEEEEEecCCcchHHHHHHHHHHHHHH
Confidence 46688888899999999999854 56678899999999999999889999885 11121 2234445555
Q ss_pred ccccc-C-CCCeeEEeCCHH------------HHHHHHHHHhhccccCcccccCCCeEEEEeeEeccCCCCCCCceEEEE
Q 003796 210 LTSEF-P-EDCKFYAADTKD------------ELHKFLWLFKEQRLTVPHWRNQRPFLMAQKVDVVADDCNSGKCTLLLH 275 (795)
Q Consensus 210 f~~ef-~-~~~Klf~l~~~~------------E~~nL~R~Is~~k~r~l~WR~~rpYmLadr~e~~~~~~~~~~~~l~v~ 275 (795)
+...- + ....++++|..+ .+..|+..|....+.|-.+.+....|.++++-..+. .| .+++
T Consensus 158 l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~~p~~~~~~p~r~~I~~~f~v~g-----~G-tvv~ 231 (396)
T PRK12735 158 LSKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIPEPERAIDKPFLMPIEDVFSISG-----RG-TVVT 231 (396)
T ss_pred HHHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCCCCCccCCCCeEEEEEEEEecCC-----ce-EEEE
Confidence 54321 1 235677777533 467899999887665655544444566666554332 34 4699
Q ss_pred EEEeCCCCCCCCeEEeCCCCc---eeeceeec
Q 003796 276 GYLRAHCLSVNQLVHISGAGD---FQLGKIEI 304 (795)
Q Consensus 276 GyvRG~~l~~n~lVHIpG~GD---fqi~~I~~ 304 (795)
|.|....++.|..|.|.+.|. .+|.+|+.
T Consensus 232 G~v~~G~i~~gd~v~i~p~~~~~~~~VksI~~ 263 (396)
T PRK12735 232 GRVERGIVKVGDEVEIVGIKETQKTTVTGVEM 263 (396)
T ss_pred EEEEecEEeCCCEEEEecCCCCeEEEEEEEEE
Confidence 999999999999999877653 35666654
No 9
>CHL00071 tufA elongation factor Tu
Probab=98.57 E-value=8.6e-06 Score=92.69 Aligned_cols=215 Identities=13% Similarity=0.104 Sum_probs=141.5
Q ss_pred CCCCCEEEEEecCCCccChhhHHHHHHHhhcc-----------CCC--CC--cceEEEe-----cCceeeEEEEeCCCC-
Q 003796 75 IASPPRVIVLFGLSASVNLNSVREDLLRQLSS-----------EGT--GA--LSSTVSS-----SKYRLRTSVLQAPHG- 133 (795)
Q Consensus 75 ~~~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~-----------~~~--~~--g~~tv~~-----~r~k~Ritfie~~~~- 133 (795)
...|.+-|+|+|-...+.. +|++.|+..... .+. .+ .-+|+.+ ...+++++|+.+| .
T Consensus 8 ~~~~~~~i~i~Gh~d~GKS-TL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtP-Gh 85 (409)
T CHL00071 8 RKKPHVNIGTIGHVDHGKT-TLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCP-GH 85 (409)
T ss_pred CCCCeEEEEEECCCCCCHH-HHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECC-Ch
Confidence 4567777999999987764 665555543210 010 01 2233331 2224688999998 4
Q ss_pred -C-hHHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc-chhhh-HHHHHHHHhh
Q 003796 134 -D-LVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT-DLKKR-KDLKKMCISS 209 (795)
Q Consensus 134 -d-l~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~-~~Kk~-~~~kK~lk~~ 209 (795)
+ +..|+.++..||.+|||+||..| +...+.+++..+...|+|.++.|++.+|. +.... ..+++.++.+
T Consensus 86 ~~~~~~~~~~~~~~D~~ilVvda~~g--------~~~qt~~~~~~~~~~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~ 157 (409)
T CHL00071 86 ADYVKNMITGAAQMDGAILVVSAADG--------PMPQTKEHILLAKQVGVPNIVVFLNKEDQVDDEELLELVELEVREL 157 (409)
T ss_pred HHHHHHHHHHHHhCCEEEEEEECCCC--------CcHHHHHHHHHHHHcCCCEEEEEEEccCCCCHHHHHHHHHHHHHHH
Confidence 3 56788889999999999999954 77889999999999999999999999995 21221 2245556666
Q ss_pred cccccCC--CCeeEEeCCHH--------------------HHHHHHHHHhhccccCcccccCCCeEEEEeeEeccCCCCC
Q 003796 210 LTSEFPE--DCKFYAADTKD--------------------ELHKFLWLFKEQRLTVPHWRNQRPFLMAQKVDVVADDCNS 267 (795)
Q Consensus 210 f~~ef~~--~~Klf~l~~~~--------------------E~~nL~R~Is~~k~r~l~WR~~rpYmLadr~e~~~~~~~~ 267 (795)
|...-++ ...++++|..+ .+..|+-.|....+.|....+....|.++++-..+.
T Consensus 158 l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~~~~~~~~~w~~~~~~ll~~l~~~~~~p~~~~~~p~r~~I~~v~~~~g---- 233 (409)
T CHL00071 158 LSKYDFPGDDIPIVSGSALLALEALTENPKIKRGENKWVDKIYNLMDAVDSYIPTPERDTDKPFLMAIEDVFSITG---- 233 (409)
T ss_pred HHHhCCCCCcceEEEcchhhcccccccCccccccCCchhhhHHHHHHHHHhhCCCCCCCCCCCEEEEEEEEEEeCC----
Confidence 5543222 25566665311 246677777766555555545555677787765432
Q ss_pred CCceEEEEEEEeCCCCCCCCeEEeCCCCc---eeeceeecc
Q 003796 268 GKCTLLLHGYLRAHCLSVNQLVHISGAGD---FQLGKIEIL 305 (795)
Q Consensus 268 ~~~~l~v~GyvRG~~l~~n~lVHIpG~GD---fqi~~I~~~ 305 (795)
.| .+++|-|....+++|..|.|.+.+. -+|.+|+.-
T Consensus 234 -~G-~Vv~G~V~sG~l~~Gd~v~i~p~~~~~~~~VksI~~~ 272 (409)
T CHL00071 234 -RG-TVATGRIERGTVKVGDTVEIVGLRETKTTTVTGLEMF 272 (409)
T ss_pred -Ce-EEEEEEEecCEEeeCCEEEEeeCCCCcEEEEEEEEEc
Confidence 34 4599999988899999999865432 456666543
No 10
>PRK12736 elongation factor Tu; Reviewed
Probab=98.53 E-value=9.7e-06 Score=91.85 Aligned_cols=213 Identities=14% Similarity=0.141 Sum_probs=140.5
Q ss_pred CCCCEEEEEecCCCccChhhHHHHHHHhhcc-----------CCC--C--CcceEEEe-----cCceeeEEEEeCCCC--
Q 003796 76 ASPPRVIVLFGLSASVNLNSVREDLLRQLSS-----------EGT--G--ALSSTVSS-----SKYRLRTSVLQAPHG-- 133 (795)
Q Consensus 76 ~~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~-----------~~~--~--~g~~tv~~-----~r~k~Ritfie~~~~-- 133 (795)
..+.+-|+|+|..+++.. +|+..|++.... .+. . ..-+|+.+ ...+++++|+.+| .
T Consensus 9 ~k~~~ni~i~Ghvd~GKS-TL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtP-Gh~ 86 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKT-TLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCP-GHA 86 (394)
T ss_pred CCCeeEEEEEccCCCcHH-HHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECC-CHH
Confidence 456778999999887764 564544543210 110 0 11122221 1224689999998 5
Q ss_pred C-hHHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc-chhhhHH-HHHHHHhhc
Q 003796 134 D-LVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT-DLKKRKD-LKKMCISSL 210 (795)
Q Consensus 134 d-l~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~-~~Kk~~~-~kK~lk~~f 210 (795)
+ +..|+..+..||.+|||+|+..| +...+.+.|..+...|+|.++.|++.+|. +.....+ +++.++.++
T Consensus 87 ~f~~~~~~~~~~~d~~llVvd~~~g--------~~~~t~~~~~~~~~~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l 158 (394)
T PRK12736 87 DYVKNMITGAAQMDGAILVVAATDG--------PMPQTREHILLARQVGVPYLVVFLNKVDLVDDEELLELVEMEVRELL 158 (394)
T ss_pred HHHHHHHHHHhhCCEEEEEEECCCC--------CchhHHHHHHHHHHcCCCEEEEEEEecCCcchHHHHHHHHHHHHHHH
Confidence 2 56788888999999999999854 66788999999999999999999999985 1122222 334455544
Q ss_pred ccccC--CCCeeEEeCCHH----------HHHHHHHHHhhccccCcccccCCCeEEEEeeEeccCCCCCCCceEEEEEEE
Q 003796 211 TSEFP--EDCKFYAADTKD----------ELHKFLWLFKEQRLTVPHWRNQRPFLMAQKVDVVADDCNSGKCTLLLHGYL 278 (795)
Q Consensus 211 ~~ef~--~~~Klf~l~~~~----------E~~nL~R~Is~~k~r~l~WR~~rpYmLadr~e~~~~~~~~~~~~l~v~Gyv 278 (795)
...-. ....++++|..+ .+..|+..|...-+.|-..-+....|.++++-..+. .|+ +++|-|
T Consensus 159 ~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp~~~~~~~~p~r~~I~~~~~~~g-----~G~-Vv~G~v 232 (394)
T PRK12736 159 SEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIPTPERDTDKPFLMPVEDVFTITG-----RGT-VVTGRV 232 (394)
T ss_pred HHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCCCCCCCCCCCeEEEEEEEEecCC-----cEE-EEEEEE
Confidence 43221 246788888644 367888888776555544434444567777655432 344 599999
Q ss_pred eCCCCCCCCeEEeCCCCc---eeeceeec
Q 003796 279 RAHCLSVNQLVHISGAGD---FQLGKIEI 304 (795)
Q Consensus 279 RG~~l~~n~lVHIpG~GD---fqi~~I~~ 304 (795)
....++.|..|-|.+.+. ..|.+|+.
T Consensus 233 ~~G~l~~gd~v~i~p~~~~~~~~V~sI~~ 261 (394)
T PRK12736 233 ERGTVKVGDEVEIVGIKETQKTVVTGVEM 261 (394)
T ss_pred eecEEecCCEEEEecCCCCeEEEEEEEEE
Confidence 999999999998866654 45666654
No 11
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=98.52 E-value=6.3e-06 Score=98.15 Aligned_cols=209 Identities=11% Similarity=0.127 Sum_probs=143.9
Q ss_pred EEEEEecCCCccChhhHHHHHHHhhccCCCC----C--cceEEEec------CceeeEEEEeCCCC--C-hHHHHHHHhh
Q 003796 80 RVIVLFGLSASVNLNSVREDLLRQLSSEGTG----A--LSSTVSSS------KYRLRTSVLQAPHG--D-LVGCMEMAKV 144 (795)
Q Consensus 80 ~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~----~--g~~tv~~~------r~k~Ritfie~~~~--d-l~~~LD~aKv 144 (795)
+||+++|-...+.. +| ++.|+..+.. + ..+|+..+ .-.++++|+.+| . + +..|+..+.-
T Consensus 1 ~ii~~~GhvdhGKT-tL----i~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtP-Ghe~fi~~m~~g~~~ 74 (614)
T PRK10512 1 MIIATAGHVDHGKT-TL----LQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVP-GHEKFLSNMLAGVGG 74 (614)
T ss_pred CEEEEECCCCCCHH-HH----HHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECC-CHHHHHHHHHHHhhc
Confidence 47899998887775 77 6666653311 1 23343321 013678999998 5 3 4778899999
Q ss_pred hceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchh-hhHHHHHHHHhhcccccCCCCeeEEe
Q 003796 145 ADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLK-KRKDLKKMCISSLTSEFPEDCKFYAA 223 (795)
Q Consensus 145 ADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~~~K-k~~~~kK~lk~~f~~ef~~~~Klf~l 223 (795)
||++|||+|+..| +...+.+.|.+|+..|.|.++.|+|.+|...+ ....++..++..+.........+|.+
T Consensus 75 ~D~~lLVVda~eg--------~~~qT~ehl~il~~lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~V 146 (614)
T PRK10512 75 IDHALLVVACDDG--------VMAQTREHLAILQLTGNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVT 146 (614)
T ss_pred CCEEEEEEECCCC--------CcHHHHHHHHHHHHcCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEE
Confidence 9999999999854 77789999999999999999999999996112 22345556666654433335678988
Q ss_pred CC--HHHHHHHHHHHhhccccCcccccCCCeEEEEeeEeccCCCCCCCceEEEEEEEeCCCCCCCCeEEeCCCC-ceeec
Q 003796 224 DT--KDELHKFLWLFKEQRLTVPHWRNQRPFLMAQKVDVVADDCNSGKCTLLLHGYLRAHCLSVNQLVHISGAG-DFQLG 300 (795)
Q Consensus 224 ~~--~~E~~nL~R~Is~~k~r~l~WR~~rpYmLadr~e~~~~~~~~~~~~l~v~GyvRG~~l~~n~lVHIpG~G-Dfqi~ 300 (795)
|. ..-+..|...|... +.+..+.+....|.+|++-..+. .| .+|+|.|....+++|..|-|-+.| ..+|.
T Consensus 147 SA~tG~gI~~L~~~L~~~-~~~~~~~~~~~rl~Id~vf~v~G-----~G-tVvtGtv~sG~l~~Gd~v~i~p~~~~~~Vr 219 (614)
T PRK10512 147 AATEGRGIDALREHLLQL-PEREHAAQHRFRLAIDRAFTVKG-----AG-LVVTGTALSGEVKVGDTLWLTGVNKPMRVR 219 (614)
T ss_pred eCCCCCCCHHHHHHHHHh-hccccCcCCCceEEEEEEeccCC-----Ce-EEEEEEEecceEecCCEEEEcCCCCcEEEE
Confidence 84 23355666666654 34455556667788888643322 34 579999999999999999887655 46777
Q ss_pred eeeccCCCC
Q 003796 301 KIEILKDPF 309 (795)
Q Consensus 301 ~I~~~~dP~ 309 (795)
+|..-..|+
T Consensus 220 sIq~~~~~v 228 (614)
T PRK10512 220 GLHAQNQPT 228 (614)
T ss_pred EEecCCcCC
Confidence 777654443
No 12
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=98.41 E-value=2.1e-05 Score=90.64 Aligned_cols=166 Identities=12% Similarity=0.082 Sum_probs=114.3
Q ss_pred eeeEEEEeCCCCC---hHHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc-chh
Q 003796 122 RLRTSVLQAPHGD---LVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT-DLK 197 (795)
Q Consensus 122 k~Ritfie~~~~d---l~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~-~~K 197 (795)
+++++|+.|| .- +..|+-.+..||++|||+||..| .....|.|.|.++.+.|++.+|.||+.+|. +..
T Consensus 116 ~~~i~~IDtP-GH~~fi~~m~~g~~~~D~alLVVda~~g-------~~~~qT~ehl~i~~~lgi~~iIVvlNKiDlv~~~ 187 (460)
T PTZ00327 116 KRHVSFVDCP-GHDILMATMLNGAAVMDAALLLIAANES-------CPQPQTSEHLAAVEIMKLKHIIILQNKIDLVKEA 187 (460)
T ss_pred cceEeeeeCC-CHHHHHHHHHHHHhhCCEEEEEEECCCC-------ccchhhHHHHHHHHHcCCCcEEEEEecccccCHH
Confidence 4689999998 43 56789999999999999999853 134567899999999999999999999985 212
Q ss_pred hhHHHHHHHHhhcccccCCCCeeEEeCC--HHHHHHHHHHHhhccccCcccccCCCeEEEEeeEeccC--CCCCCCceEE
Q 003796 198 KRKDLKKMCISSLTSEFPEDCKFYAADT--KDELHKFLWLFKEQRLTVPHWRNQRPFLMAQKVDVVAD--DCNSGKCTLL 273 (795)
Q Consensus 198 k~~~~kK~lk~~f~~ef~~~~Klf~l~~--~~E~~nL~R~Is~~k~r~l~WR~~rpYmLadr~e~~~~--~~~~~~~~l~ 273 (795)
........++.++...+..+..+|++|. -..+..|+-.|...-+.|-...+....|.++|.=.... ...+...-.+
T Consensus 188 ~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~~~r~~~~p~r~~Idr~F~V~~~g~~~~~~~GtV 267 (460)
T PTZ00327 188 QAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIPIPKRDLTSPPRMIVIRSFDVNKPGEDIENLKGGV 267 (460)
T ss_pred HHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCCCCCCCCCCCcEEEEEEEEeecccCCcccCCceEE
Confidence 2233444555555444456789999994 33466777777754444433335566677786533221 0001112357
Q ss_pred EEEEEeCCCCCCCCeEEeCCCC
Q 003796 274 LHGYLRAHCLSVNQLVHISGAG 295 (795)
Q Consensus 274 v~GyvRG~~l~~n~lVHIpG~G 295 (795)
|+|.|....+++|+.|.|.-.|
T Consensus 268 v~G~v~~G~l~~Gd~v~i~P~~ 289 (460)
T PTZ00327 268 AGGSILQGVLKVGDEIEIRPGI 289 (460)
T ss_pred EEEEEeeceEecCCEEEEccCc
Confidence 8999999999999999886543
No 13
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=98.40 E-value=3.2e-05 Score=91.81 Aligned_cols=208 Identities=15% Similarity=0.151 Sum_probs=135.4
Q ss_pred EEEEEecCCCccChhhHHHHHHHhhccCCCC----C--cceEEEec-----CceeeEEEEeCCCCC---hHHHHHHHhhh
Q 003796 80 RVIVLFGLSASVNLNSVREDLLRQLSSEGTG----A--LSSTVSSS-----KYRLRTSVLQAPHGD---LVGCMEMAKVA 145 (795)
Q Consensus 80 ~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~----~--g~~tv~~~-----r~k~Ritfie~~~~d---l~~~LD~aKvA 145 (795)
.+|+++|..+.+++ +| ++.|++.+.. + ..+|+..+ --..+++|+.+| .. +..|+..++-|
T Consensus 1 ~~I~iiG~~d~GKT-TL----i~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtP-Ghe~f~~~~~~g~~~a 74 (581)
T TIGR00475 1 MIIATAGHVDHGKT-TL----LKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVP-GHEKFISNAIAGGGGI 74 (581)
T ss_pred CEEEEECCCCCCHH-HH----HHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECC-CHHHHHHHHHhhhccC
Confidence 47999999998875 77 6666643211 1 22333221 012689999998 43 56788889999
Q ss_pred ceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchhh-hHHHHHHHHhhcccccC-CCCeeEEe
Q 003796 146 DLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKK-RKDLKKMCISSLTSEFP-EDCKFYAA 223 (795)
Q Consensus 146 DlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~~~Kk-~~~~kK~lk~~f~~ef~-~~~Klf~l 223 (795)
|.+|||+|++.| +...+++.|.+++..|+|+++.|++..|...+. ...+.+.++..++.... .+..+|.+
T Consensus 75 D~aILVVDa~~G--------~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~v 146 (581)
T TIGR00475 75 DAALLVVDADEG--------VMTQTGEHLAVLDLLGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKT 146 (581)
T ss_pred CEEEEEEECCCC--------CcHHHHHHHHHHHHcCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEE
Confidence 999999999965 667889999999999999999999998851122 22344555555544322 26789998
Q ss_pred CC-----HHHHHHH-HHHHhhccccCcccccCCCeEEEEeeEeccCCCCCCCceEEEEEEEeCCCCCCCCeEEeCCCC-c
Q 003796 224 DT-----KDELHKF-LWLFKEQRLTVPHWRNQRPFLMAQKVDVVADDCNSGKCTLLLHGYLRAHCLSVNQLVHISGAG-D 296 (795)
Q Consensus 224 ~~-----~~E~~nL-~R~Is~~k~r~l~WR~~rpYmLadr~e~~~~~~~~~~~~l~v~GyvRG~~l~~n~lVHIpG~G-D 296 (795)
|. -.+..+. ...+.....+. -+....|.+|++-.... .| .+|+|.|....+++|..|-|-..| .
T Consensus 147 SA~tG~GI~eL~~~L~~l~~~~~~~~---~~~p~r~~Id~~f~v~G-----~G-tVv~G~v~~G~i~~Gd~l~i~P~~~~ 217 (581)
T TIGR00475 147 SAKTGQGIGELKKELKNLLESLDIKR---IQKPLRMAIDRAFKVKG-----AG-TVVTGTAFSGEVKVGDNLRLLPINHE 217 (581)
T ss_pred eCCCCCCchhHHHHHHHHHHhCCCcC---cCCCcEEEEEEEEecCC-----cE-EEEEEEEecceEecCCEEEECCCCce
Confidence 83 2333322 22222222221 13344577777554322 23 579999999999999999887655 5
Q ss_pred eeeceeeccCCCCC
Q 003796 297 FQLGKIEILKDPFP 310 (795)
Q Consensus 297 fqi~~I~~~~dP~p 310 (795)
.+|.+|..-..|+.
T Consensus 218 ~~Vr~iq~~~~~v~ 231 (581)
T TIGR00475 218 VRVKAIQAQNQDVE 231 (581)
T ss_pred EEEeEEEECCccCC
Confidence 77888876555443
No 14
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.40 E-value=2.6e-05 Score=88.41 Aligned_cols=215 Identities=13% Similarity=0.098 Sum_probs=139.1
Q ss_pred CCCCEEEEEecCCCccChhhHHHHHHHhhcc-----------CCC--CC--cceE-----EEecCceeeEEEEeCCC-CC
Q 003796 76 ASPPRVIVLFGLSASVNLNSVREDLLRQLSS-----------EGT--GA--LSST-----VSSSKYRLRTSVLQAPH-GD 134 (795)
Q Consensus 76 ~~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~-----------~~~--~~--g~~t-----v~~~r~k~Ritfie~~~-~d 134 (795)
.-|-+.|+|+|-.+.+.. +|+..|+..+.. .+. .+ .-+| +.....+++++|+.+|- .+
T Consensus 9 ~~~~~~i~i~Ghvd~GKS-tL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~ 87 (394)
T TIGR00485 9 TKPHVNIGTIGHVDHGKT-TLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHAD 87 (394)
T ss_pred CCceEEEEEEeecCCCHH-HHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHH
Confidence 355677999998887664 564444432110 010 00 1112 22222356899999982 13
Q ss_pred -hHHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc-chhhh-HHHHHHHHhhcc
Q 003796 135 -LVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT-DLKKR-KDLKKMCISSLT 211 (795)
Q Consensus 135 -l~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~-~~Kk~-~~~kK~lk~~f~ 211 (795)
+..|+-.+..||.+|||+|+..| ....+++.|..+...|+|.++.|++.+|. +.... ..+++.++.++.
T Consensus 88 f~~~~~~~~~~~D~~ilVvda~~g--------~~~qt~e~l~~~~~~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~ 159 (394)
T TIGR00485 88 YVKNMITGAAQMDGAILVVSATDG--------PMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLS 159 (394)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCC--------CcHHHHHHHHHHHHcCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHH
Confidence 46788888999999999999955 66788999999999999999999999985 11221 123444555554
Q ss_pred cccCC--CCeeEEeCCH----------HHHHHHHHHHhhccccCcccccCCCeEEEEeeEeccCCCCCCCceEEEEEEEe
Q 003796 212 SEFPE--DCKFYAADTK----------DELHKFLWLFKEQRLTVPHWRNQRPFLMAQKVDVVADDCNSGKCTLLLHGYLR 279 (795)
Q Consensus 212 ~ef~~--~~Klf~l~~~----------~E~~nL~R~Is~~k~r~l~WR~~rpYmLadr~e~~~~~~~~~~~~l~v~GyvR 279 (795)
..-.. ...+++.|.. +.+..|+..|....+.|-.+-+.-..|.++++-..+. .| .+++|-|.
T Consensus 160 ~~~~~~~~~~ii~vSa~~g~~g~~~~~~~~~~ll~~l~~~~~~~~~~~~~p~r~~V~~vf~~~g-----~G-~Vv~G~v~ 233 (394)
T TIGR00485 160 EYDFPGDDTPIIRGSALKALEGDAEWEAKILELMDAVDEYIPTPERETDKPFLMPIEDVFSITG-----RG-TVVTGRVE 233 (394)
T ss_pred hcCCCccCccEEECccccccccCCchhHhHHHHHHHHHhcCCCCCCCCCCCeEEEEEEEEeeCC-----ce-EEEEEEEE
Confidence 33221 2678887742 1346777777766665655555555577777654432 24 57999999
Q ss_pred CCCCCCCCeEEeCCCC---ceeeceeecc
Q 003796 280 AHCLSVNQLVHISGAG---DFQLGKIEIL 305 (795)
Q Consensus 280 G~~l~~n~lVHIpG~G---Dfqi~~I~~~ 305 (795)
..-+++|..|.|.+.+ ...|.+|..-
T Consensus 234 ~G~l~~gd~v~i~p~~~~~~~~VksI~~~ 262 (394)
T TIGR00485 234 RGIVKVGEEVEIVGLKDTRKTTVTGVEMF 262 (394)
T ss_pred eeEEeCCCEEEEecCCCCcEEEEEEEEEC
Confidence 9899999999986543 4567777653
No 15
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=98.39 E-value=1.1e-05 Score=81.56 Aligned_cols=146 Identities=17% Similarity=0.260 Sum_probs=99.7
Q ss_pred EEEEEecCCCccChhhHHHHHHHhhccCC----------------------CCC--cceEEEecCceeeEEEEeCCCCC-
Q 003796 80 RVIVLFGLSASVNLNSVREDLLRQLSSEG----------------------TGA--LSSTVSSSKYRLRTSVLQAPHGD- 134 (795)
Q Consensus 80 ~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~----------------------~~~--g~~tv~~~r~k~Ritfie~~~~d- 134 (795)
+.|+|+|..+++.. +|+..|+......+ .+. +...+......++++||.|| ..
T Consensus 4 ~~I~i~G~~~sGKT-TL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtP-G~~ 81 (188)
T PF00009_consen 4 RNIAIIGHVDSGKT-TLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTP-GHE 81 (188)
T ss_dssp EEEEEEESTTSSHH-HHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEES-SSH
T ss_pred EEEEEECCCCCCcE-eechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccc-ccc
Confidence 56999999987765 55455454431110 011 33333311235899999998 55
Q ss_pred --hHHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchhhhHHHHHHHHhhccc
Q 003796 135 --LVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKKRKDLKKMCISSLTS 212 (795)
Q Consensus 135 --l~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~~~Kk~~~~kK~lk~~f~~ 212 (795)
+..|+-+++.||.+|+|+||..| +...+.++|..++..|+| +|.||+.+|.-.+...++.+.++..|.+
T Consensus 82 ~f~~~~~~~~~~~D~ailvVda~~g--------~~~~~~~~l~~~~~~~~p-~ivvlNK~D~~~~~~~~~~~~~~~~l~~ 152 (188)
T PF00009_consen 82 DFIKEMIRGLRQADIAILVVDANDG--------IQPQTEEHLKILRELGIP-IIVVLNKMDLIEKELEEIIEEIKEKLLK 152 (188)
T ss_dssp HHHHHHHHHHTTSSEEEEEEETTTB--------STHHHHHHHHHHHHTT-S-EEEEEETCTSSHHHHHHHHHHHHHHHHH
T ss_pred ceeecccceecccccceeeeecccc--------cccccccccccccccccc-eEEeeeeccchhhhHHHHHHHHHHHhcc
Confidence 56788999999999999999954 888999999999999999 8999999996223445677777766655
Q ss_pred ccCCC----CeeEEeCCH--HHHHHHHHHH
Q 003796 213 EFPED----CKFYAADTK--DELHKFLWLF 236 (795)
Q Consensus 213 ef~~~----~Klf~l~~~--~E~~nL~R~I 236 (795)
..+.+ ..++++|.. .-+..|+..|
T Consensus 153 ~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l 182 (188)
T PF00009_consen 153 EYGENGEEIVPVIPISALTGDGIDELLEAL 182 (188)
T ss_dssp HTTSTTTSTEEEEEEBTTTTBTHHHHHHHH
T ss_pred ccccCccccceEEEEecCCCCCHHHHHHHH
Confidence 55422 478998852 2344444444
No 16
>PRK00049 elongation factor Tu; Reviewed
Probab=98.38 E-value=2.4e-05 Score=88.73 Aligned_cols=206 Identities=14% Similarity=0.149 Sum_probs=134.4
Q ss_pred CCCCEEEEEecCCCccChhhHHHHHHHhhccC-----------C--CC--CcceEEEe-----cCceeeEEEEeCCCC--
Q 003796 76 ASPPRVIVLFGLSASVNLNSVREDLLRQLSSE-----------G--TG--ALSSTVSS-----SKYRLRTSVLQAPHG-- 133 (795)
Q Consensus 76 ~~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~-----------~--~~--~g~~tv~~-----~r~k~Ritfie~~~~-- 133 (795)
.-+-+-|+|+|-.+.+.. +|+..|+...... + .. ..-+|+.+ ...+.+++|+.+| .
T Consensus 9 ~~~~~ni~iiGhvd~GKS-TL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtP-G~~ 86 (396)
T PRK00049 9 TKPHVNVGTIGHVDHGKT-TLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCP-GHA 86 (396)
T ss_pred CCCEEEEEEEeECCCCHH-HHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECC-CHH
Confidence 455566999998887654 6655445422110 1 00 12223322 1224689999998 5
Q ss_pred C-hHHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc-chhhh-HHHHHHHHhhc
Q 003796 134 D-LVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT-DLKKR-KDLKKMCISSL 210 (795)
Q Consensus 134 d-l~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~-~~Kk~-~~~kK~lk~~f 210 (795)
+ +..|+..+..||.+|||+|+..| +...+.+++..+...|+|.++.+++.+|. +...+ ...++.++.+|
T Consensus 87 ~f~~~~~~~~~~aD~~llVVDa~~g--------~~~qt~~~~~~~~~~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l 158 (396)
T PRK00049 87 DYVKNMITGAAQMDGAILVVSAADG--------PMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELL 158 (396)
T ss_pred HHHHHHHhhhccCCEEEEEEECCCC--------CchHHHHHHHHHHHcCCCEEEEEEeecCCcchHHHHHHHHHHHHHHH
Confidence 3 46678888999999999999855 67788999999999999998889999986 11111 22444566665
Q ss_pred ccc-c-CCCCeeEEeCCHH------------HHHHHHHHHhhccccCcccccCCCeEEEEeeEeccCCCCCCCceEEEEE
Q 003796 211 TSE-F-PEDCKFYAADTKD------------ELHKFLWLFKEQRLTVPHWRNQRPFLMAQKVDVVADDCNSGKCTLLLHG 276 (795)
Q Consensus 211 ~~e-f-~~~~Klf~l~~~~------------E~~nL~R~Is~~k~r~l~WR~~rpYmLadr~e~~~~~~~~~~~~l~v~G 276 (795)
... + +....++++|..+ .+..|+..|....+.|-..-+....|.++++-..+. .| .+++|
T Consensus 159 ~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~~~p~~~~~~p~r~~I~~~f~v~g-----~G-~Vv~G 232 (396)
T PRK00049 159 SKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYIPTPERAIDKPFLMPIEDVFSISG-----RG-TVVTG 232 (396)
T ss_pred HhcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcCCCCCCCCCCCeEEEEEEEEeeCC-----ce-EEEEE
Confidence 432 2 2345677777432 356888888876555544444444455666544322 34 46899
Q ss_pred EEeCCCCCCCCeEEeCCCCce
Q 003796 277 YLRAHCLSVNQLVHISGAGDF 297 (795)
Q Consensus 277 yvRG~~l~~n~lVHIpG~GDf 297 (795)
.|....+++|..|.|.+.+++
T Consensus 233 ~v~~G~i~~gd~v~i~p~~~~ 253 (396)
T PRK00049 233 RVERGIIKVGEEVEIVGIRDT 253 (396)
T ss_pred EEeeeEEecCCEEEEeecCCC
Confidence 999999999999999766543
No 17
>PLN03126 Elongation factor Tu; Provisional
Probab=98.37 E-value=3.8e-05 Score=89.01 Aligned_cols=207 Identities=14% Similarity=0.142 Sum_probs=135.7
Q ss_pred CCCCEEEEEecCCCccChhhHHHHHHHhhcc-----------CC--CCC--cceEEEe-----cCceeeEEEEeCCCC--
Q 003796 76 ASPPRVIVLFGLSASVNLNSVREDLLRQLSS-----------EG--TGA--LSSTVSS-----SKYRLRTSVLQAPHG-- 133 (795)
Q Consensus 76 ~~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~-----------~~--~~~--g~~tv~~-----~r~k~Ritfie~~~~-- 133 (795)
..|.+.|+++|-.+.+.. +|++.|+..... .+ ..+ .-+|+.+ ...+++++||.+| .
T Consensus 78 ~k~~~ni~iiGhvd~GKS-TLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtP-Gh~ 155 (478)
T PLN03126 78 KKPHVNIGTIGHVDHGKT-TLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCP-GHA 155 (478)
T ss_pred cCCeeEEEEECCCCCCHH-HHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECC-CHH
Confidence 356677999999887764 565544532110 01 111 2233321 1235799999998 4
Q ss_pred C-hHHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc-chhh-hHHHHHHHHhhc
Q 003796 134 D-LVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT-DLKK-RKDLKKMCISSL 210 (795)
Q Consensus 134 d-l~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~-~~Kk-~~~~kK~lk~~f 210 (795)
+ +..|+..+..||.+|||+||..| ....+.+.+..++..|+|..+.+++.+|. +... ...+++.++.++
T Consensus 156 ~f~~~~~~g~~~aD~ailVVda~~G--------~~~qt~e~~~~~~~~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l 227 (478)
T PLN03126 156 DYVKNMITGAAQMDGAILVVSGADG--------PMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLELVELEVRELL 227 (478)
T ss_pred HHHHHHHHHHhhCCEEEEEEECCCC--------CcHHHHHHHHHHHHcCCCeEEEEEecccccCHHHHHHHHHHHHHHHH
Confidence 3 56889999999999999999965 66788999999999999999999999985 2111 122444555555
Q ss_pred ccc-cC-CCCeeEEeCCHH--------------------HHHHHHHHHhhccccCcccccCCCeEEEEeeEeccCCCCCC
Q 003796 211 TSE-FP-EDCKFYAADTKD--------------------ELHKFLWLFKEQRLTVPHWRNQRPFLMAQKVDVVADDCNSG 268 (795)
Q Consensus 211 ~~e-f~-~~~Klf~l~~~~--------------------E~~nL~R~Is~~k~r~l~WR~~rpYmLadr~e~~~~~~~~~ 268 (795)
... |+ ....++++|..+ .+..|+-.|-...+-|-..-+....|.++++-..+.
T Consensus 228 ~~~g~~~~~~~~vp~Sa~~g~n~~~~~~~~~~g~~~wy~~i~~Ll~~l~~~~~~p~r~~~~p~r~~I~~vf~v~g----- 302 (478)
T PLN03126 228 SSYEFPGDDIPIISGSALLALEALMENPNIKRGDNKWVDKIYELMDAVDSYIPIPQRQTDLPFLLAVEDVFSITG----- 302 (478)
T ss_pred HhcCCCcCcceEEEEEccccccccccccccccCCCchhhhHHHHHHHHHHhCCCCCCccccceeeEEEEEEEeCC-----
Confidence 442 22 245566654211 245677777765444444445555677777654432
Q ss_pred CceEEEEEEEeCCCCCCCCeEEeCCCCcee
Q 003796 269 KCTLLLHGYLRAHCLSVNQLVHISGAGDFQ 298 (795)
Q Consensus 269 ~~~l~v~GyvRG~~l~~n~lVHIpG~GDfq 298 (795)
.| .+|+|.|....+++|..|.|-..|+++
T Consensus 303 ~G-tVv~G~V~sG~i~~Gd~v~i~p~~~~~ 331 (478)
T PLN03126 303 RG-TVATGRVERGTVKVGETVDIVGLRETR 331 (478)
T ss_pred ce-EEEEEEEEcCeEecCCEEEEecCCCce
Confidence 23 578999999999999999998888654
No 18
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=98.37 E-value=3.4e-05 Score=87.87 Aligned_cols=163 Identities=14% Similarity=0.135 Sum_probs=108.7
Q ss_pred eeEEEEeCCCCC---hHHHHHHHhhhceEEEeeeCCCcccccccccc-ChHHHHHHHHHHhcCCCceEEEeccCCc-chh
Q 003796 123 LRTSVLQAPHGD---LVGCMEMAKVADLVAFVASASSFSEESMSYYI-DSFGNQCLSVFRSLGLPSTAVLIRDLPT-DLK 197 (795)
Q Consensus 123 ~Ritfie~~~~d---l~~~LD~aKvADlVll~idas~g~~~~~~~~f-e~eg~e~L~~l~aqG~P~vigVl~~Ld~-~~K 197 (795)
++++|+.+| .. +..++..+..||.+|+|+|++.| + +.++++.|..++..|++.++.|++.+|. +..
T Consensus 85 ~~i~liDtP-G~~~f~~~~~~~~~~~D~~llVVDa~~~--------~~~~~t~~~l~~l~~~~i~~iiVVlNK~Dl~~~~ 155 (411)
T PRK04000 85 RRVSFVDAP-GHETLMATMLSGAALMDGAILVIAANEP--------CPQPQTKEHLMALDIIGIKNIVIVQNKIDLVSKE 155 (411)
T ss_pred cEEEEEECC-CHHHHHHHHHHHHhhCCEEEEEEECCCC--------CCChhHHHHHHHHHHcCCCcEEEEEEeeccccch
Confidence 689999998 43 34677788889999999999954 4 6678889999999999999999999885 111
Q ss_pred hhHHHHHHHHhhcccccCCCCeeEEeCC--HHHHHHHHHHHhhccccCcccccCCCeEEEEeeEeccCCC---CCCCceE
Q 003796 198 KRKDLKKMCISSLTSEFPEDCKFYAADT--KDELHKFLWLFKEQRLTVPHWRNQRPFLMAQKVDVVADDC---NSGKCTL 272 (795)
Q Consensus 198 k~~~~kK~lk~~f~~ef~~~~Klf~l~~--~~E~~nL~R~Is~~k~r~l~WR~~rpYmLadr~e~~~~~~---~~~~~~l 272 (795)
......+.++..+...+..+..+|.+|. ...+..|...|...-+.|-...+....|.++++-.+.... .+..| .
T Consensus 156 ~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~~~~~~~~~~r~~I~~~f~v~~~g~~~~~~~G-~ 234 (411)
T PRK04000 156 RALENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIPTPERDLDKPPRMYVARSFDVNKPGTPPEKLKG-G 234 (411)
T ss_pred hHHHHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCCCCCCCCCCCceEEEEeeeeecCCCccccCCcc-e
Confidence 1222334444444433344678888884 2345566666665434444444555567787754332110 11123 4
Q ss_pred EEEEEEeCCCCCCCCeEEeCCCC
Q 003796 273 LLHGYLRAHCLSVNQLVHISGAG 295 (795)
Q Consensus 273 ~v~GyvRG~~l~~n~lVHIpG~G 295 (795)
+++|.|....+++|+.|.|..-|
T Consensus 235 Vv~G~v~~G~l~~gd~v~i~P~~ 257 (411)
T PRK04000 235 VIGGSLIQGVLKVGDEIEIRPGI 257 (411)
T ss_pred EEEEEEEeCEEecCCEEEEcCCc
Confidence 69999999999999999994333
No 19
>PLN03127 Elongation factor Tu; Provisional
Probab=98.34 E-value=5e-05 Score=87.41 Aligned_cols=215 Identities=14% Similarity=0.149 Sum_probs=137.7
Q ss_pred CCCCEEEEEecCCCccChhhHHHHHHHhhcc-----------CCC--CC--cceEEE-----ecCceeeEEEEeCCC-CC
Q 003796 76 ASPPRVIVLFGLSASVNLNSVREDLLRQLSS-----------EGT--GA--LSSTVS-----SSKYRLRTSVLQAPH-GD 134 (795)
Q Consensus 76 ~~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~-----------~~~--~~--g~~tv~-----~~r~k~Ritfie~~~-~d 134 (795)
.-|.+.|+++|-.+.+.. +|++.|.+.... ++. .+ .-+|+. ....+++++|+.+|- .+
T Consensus 58 ~k~~~ni~iiGhvd~GKS-TL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~ 136 (447)
T PLN03127 58 TKPHVNVGTIGHVDHGKT-TLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHAD 136 (447)
T ss_pred CCceEEEEEECcCCCCHH-HHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccc
Confidence 456777999998887654 664444433211 111 11 122222 222346899999982 23
Q ss_pred -hHHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc-chhhhHH-HHHHHHhhcc
Q 003796 135 -LVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT-DLKKRKD-LKKMCISSLT 211 (795)
Q Consensus 135 -l~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~-~~Kk~~~-~kK~lk~~f~ 211 (795)
+..|+-.+..||++|||+||..| +...+.+.|..+..+|.|.+|.||+.+|. +.....+ +++.++.++.
T Consensus 137 f~~~~~~g~~~aD~allVVda~~g--------~~~qt~e~l~~~~~~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~ 208 (447)
T PLN03127 137 YVKNMITGAAQMDGGILVVSAPDG--------PMPQTKEHILLARQVGVPSLVVFLNKVDVVDDEELLELVEMELRELLS 208 (447)
T ss_pred hHHHHHHHHhhCCEEEEEEECCCC--------CchhHHHHHHHHHHcCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHH
Confidence 56688888889999999999855 66789999999999999999999999985 1122222 3334444443
Q ss_pred cc-cC-CCCeeEEeCC------------HHHHHHHHHHHhhccccCcccccCCCeEEEEeeEeccCCCCCCCceEEEEEE
Q 003796 212 SE-FP-EDCKFYAADT------------KDELHKFLWLFKEQRLTVPHWRNQRPFLMAQKVDVVADDCNSGKCTLLLHGY 277 (795)
Q Consensus 212 ~e-f~-~~~Klf~l~~------------~~E~~nL~R~Is~~k~r~l~WR~~rpYmLadr~e~~~~~~~~~~~~l~v~Gy 277 (795)
.. ++ ....++++|. ...+..|+..|...-+.|..+-+....|.++++-..+. .| .+|+|-
T Consensus 209 ~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp~p~r~~~~pfr~~I~~vf~v~g-----~G-tVvtG~ 282 (447)
T PLN03127 209 FYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIPEPVRVLDKPFLMPIEDVFSIQG-----RG-TVATGR 282 (447)
T ss_pred HhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCCCCCcccccceEeeEEEEEEcCC-----ce-EEEEEE
Confidence 21 21 1234544442 13467888888887666666655555566776544322 24 579999
Q ss_pred EeCCCCCCCCeEEeCCCC-----ceeeceeecc
Q 003796 278 LRAHCLSVNQLVHISGAG-----DFQLGKIEIL 305 (795)
Q Consensus 278 vRG~~l~~n~lVHIpG~G-----Dfqi~~I~~~ 305 (795)
|...-+++|..|.|-|.+ ..+|.+|+.-
T Consensus 283 v~~G~i~~Gd~v~i~p~~~~g~~~~~VksI~~~ 315 (447)
T PLN03127 283 VEQGTIKVGEEVEIVGLRPGGPLKTTVTGVEMF 315 (447)
T ss_pred EEccEEecCCEEEEcccCCCCcEEEEEEEEEEE
Confidence 999889999999886542 3466666644
No 20
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=98.32 E-value=5.4e-05 Score=86.18 Aligned_cols=164 Identities=13% Similarity=0.111 Sum_probs=109.2
Q ss_pred eeeEEEEeCCC--CChHHHHHHHhhhceEEEeeeCCCcccccccccc-ChHHHHHHHHHHhcCCCceEEEeccCCc-chh
Q 003796 122 RLRTSVLQAPH--GDLVGCMEMAKVADLVAFVASASSFSEESMSYYI-DSFGNQCLSVFRSLGLPSTAVLIRDLPT-DLK 197 (795)
Q Consensus 122 k~Ritfie~~~--~dl~~~LD~aKvADlVll~idas~g~~~~~~~~f-e~eg~e~L~~l~aqG~P~vigVl~~Ld~-~~K 197 (795)
.++++|+.+|- .=+..|+-.+..||.+|||+||+.| + ..++.+.|..++..|++.++.|++.+|. +..
T Consensus 79 ~~~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g--------~~~~qt~e~l~~l~~~gi~~iIVvvNK~Dl~~~~ 150 (406)
T TIGR03680 79 LRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEP--------CPQPQTKEHLMALEIIGIKNIVIVQNKIDLVSKE 150 (406)
T ss_pred ccEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCC--------ccccchHHHHHHHHHcCCCeEEEEEEccccCCHH
Confidence 36899999983 1256788888999999999999965 4 5578889999999999999999999885 111
Q ss_pred hhHHHHHHHHhhcccccCCCCeeEEeCC--HHHHHHHHHHHhhccccCcccccCCCeEEEEeeEeccCCC--CCCCceEE
Q 003796 198 KRKDLKKMCISSLTSEFPEDCKFYAADT--KDELHKFLWLFKEQRLTVPHWRNQRPFLMAQKVDVVADDC--NSGKCTLL 273 (795)
Q Consensus 198 k~~~~kK~lk~~f~~ef~~~~Klf~l~~--~~E~~nL~R~Is~~k~r~l~WR~~rpYmLadr~e~~~~~~--~~~~~~l~ 273 (795)
........++..+...+..+..+|++|. ...+..|.-.|...-+.|-..-+....|.++++-.+.... .+.....+
T Consensus 151 ~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~~~~~~~~~~~~~~I~~~f~v~~~g~~~~~~~G~V 230 (406)
T TIGR03680 151 KALENYEEIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIPTPERDLDKPPLMYVARSFDVNKPGTPPEKLKGGV 230 (406)
T ss_pred HHHHHHHHHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCCCCCCCCCCCcEEEEEEEEeecCCCccccCCceeE
Confidence 1222333444444333334567888883 3345556666665434443444566678888764432210 01112247
Q ss_pred EEEEEeCCCCCCCCeEEe-CC
Q 003796 274 LHGYLRAHCLSVNQLVHI-SG 293 (795)
Q Consensus 274 v~GyvRG~~l~~n~lVHI-pG 293 (795)
++|.|....+++|..|.| |+
T Consensus 231 v~G~v~~G~i~~gd~v~i~P~ 251 (406)
T TIGR03680 231 IGGSLIQGKLKVGDEIEIRPG 251 (406)
T ss_pred EEEEEEeCEEeCCCEEEEccC
Confidence 899999999999999999 66
No 21
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=98.03 E-value=0.00046 Score=79.58 Aligned_cols=174 Identities=15% Similarity=0.120 Sum_probs=116.8
Q ss_pred eeeEEEEeCCC-CC-hHHHHHHHhhhceEEEeeeCCCcccccccccc--ChHHHHHHHHHHhcCCCceEEEeccCCc---
Q 003796 122 RLRTSVLQAPH-GD-LVGCMEMAKVADLVAFVASASSFSEESMSYYI--DSFGNQCLSVFRSLGLPSTAVLIRDLPT--- 194 (795)
Q Consensus 122 k~Ritfie~~~-~d-l~~~LD~aKvADlVll~idas~g~~~~~~~~f--e~eg~e~L~~l~aqG~P~vigVl~~Ld~--- 194 (795)
..+++||.+|- .+ +..|+-++..||.+|||+||..|. ++ .+| +-.|.+.|.++.+.|+|.+|.+++.+|.
T Consensus 84 ~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~-~e--~~~~~~~qT~eh~~~~~~~gi~~iiv~vNKmD~~~~ 160 (446)
T PTZ00141 84 KYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGE-FE--AGISKDGQTREHALLAFTLGVKQMIVCINKMDDKTV 160 (446)
T ss_pred CeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCc-ee--cccCCCccHHHHHHHHHHcCCCeEEEEEEccccccc
Confidence 47899999982 23 568999999999999999999762 00 123 3589999999999999999999999993
Q ss_pred ch--hhhHHHHHHHHhhcccccC--CCCeeEEeCCHHH--------------HHHHHHHHhhccccCcccccCCCeEEEE
Q 003796 195 DL--KKRKDLKKMCISSLTSEFP--EDCKFYAADTKDE--------------LHKFLWLFKEQRLTVPHWRNQRPFLMAQ 256 (795)
Q Consensus 195 ~~--Kk~~~~kK~lk~~f~~ef~--~~~Klf~l~~~~E--------------~~nL~R~Is~~k~r~l~WR~~rpYmLad 256 (795)
++ ..-..+++.++.+|...-. ....++++|..+. .-.|+..|-...+ |-.+.+.-..|.++
T Consensus 161 ~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~~~~~~~Wy~G~tL~~~l~~~~~-~~~~~~~p~r~~I~ 239 (446)
T PTZ00141 161 NYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIEKSDNMPWYKGPTLLEALDTLEP-PKRPVDKPLRLPLQ 239 (446)
T ss_pred hhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCcccCCCCCcccchHHHHHHHhCCCC-CCcCCCCCeEEEEE
Confidence 11 1224567777777654322 2466788873210 1136666655432 33344444457777
Q ss_pred eeEeccCCCCCCCceEEEEEEEeCCCCCCCCeEEeCCCC-ceeeceeecc
Q 003796 257 KVDVVADDCNSGKCTLLLHGYLRAHCLSVNQLVHISGAG-DFQLGKIEIL 305 (795)
Q Consensus 257 r~e~~~~~~~~~~~~l~v~GyvRG~~l~~n~lVHIpG~G-Dfqi~~I~~~ 305 (795)
++--.+. .+ .+++|.|....+++|+.|.+.--| ...|.+|+.-
T Consensus 240 ~v~~v~g-----~G-tvv~G~V~~G~l~~Gd~v~i~P~~~~~~VksI~~~ 283 (446)
T PTZ00141 240 DVYKIGG-----IG-TVPVGRVETGILKPGMVVTFAPSGVTTEVKSVEMH 283 (446)
T ss_pred EEEecCC-----ce-EEEEEEEEcceEecCCEEEEccCCcEEEEEEEEec
Confidence 7654322 23 577999999999999988775444 3566666543
No 22
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=98.01 E-value=2.2e-05 Score=76.43 Aligned_cols=130 Identities=15% Similarity=0.142 Sum_probs=88.7
Q ss_pred EEEecCCCccChhhHHHHHHHhhccCCCCC----cceEEEecCceeeEEEEeCCCCChHHHHHHHhhhceEEEeeeCCCc
Q 003796 82 IVLFGLSASVNLNSVREDLLRQLSSEGTGA----LSSTVSSSKYRLRTSVLQAPHGDLVGCMEMAKVADLVAFVASASSF 157 (795)
Q Consensus 82 V~Vvg~~~~~~~~sl~~~lvk~~~~~~~~~----g~~tv~~~r~k~Ritfie~~~~dl~~~LD~aKvADlVll~idas~g 157 (795)
|.+||+.+++.. +|++.|...-..+..+. ...+|-+|. .|+|+| +-..++|..|.-||+|++|.||+..
T Consensus 4 imliG~~g~GKT-TL~q~L~~~~~~~~KTq~i~~~~~~IDTPG-----EyiE~~-~~y~aLi~ta~dad~V~ll~dat~~ 76 (143)
T PF10662_consen 4 IMLIGPSGSGKT-TLAQALNGEEIRYKKTQAIEYYDNTIDTPG-----EYIENP-RFYHALIVTAQDADVVLLLQDATEP 76 (143)
T ss_pred EEEECCCCCCHH-HHHHHHcCCCCCcCccceeEecccEEECCh-----hheeCH-HHHHHHHHHHhhCCEEEEEecCCCC
Confidence 789999998876 67444343333332222 334455554 589998 9999999999999999999999964
Q ss_pred cccccccccChHHHHHHHHHHhcCCCceEEEeccCCcc--hhhhHHHHHHHHhhcccccCCCCeeEEeCC--HHHHHHHH
Q 003796 158 SEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTD--LKKRKDLKKMCISSLTSEFPEDCKFYAADT--KDELHKFL 233 (795)
Q Consensus 158 ~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~~--~Kk~~~~kK~lk~~f~~ef~~~~Klf~l~~--~~E~~nL~ 233 (795)
+...--.|.++++ ..||||+|++|.. ......+++.|+..-++ ++|.+|. ..-+..|.
T Consensus 77 --------~~~~pP~fa~~f~----~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~------~if~vS~~~~eGi~eL~ 138 (143)
T PF10662_consen 77 --------RSVFPPGFASMFN----KPVIGVITKIDLPSDDANIERAKKWLKNAGVK------EIFEVSAVTGEGIEELK 138 (143)
T ss_pred --------CccCCchhhcccC----CCEEEEEECccCccchhhHHHHHHHHHHcCCC------CeEEEECCCCcCHHHHH
Confidence 4455566666664 5799999999962 34445677888876543 5788874 33344555
Q ss_pred HHH
Q 003796 234 WLF 236 (795)
Q Consensus 234 R~I 236 (795)
++|
T Consensus 139 ~~L 141 (143)
T PF10662_consen 139 DYL 141 (143)
T ss_pred HHH
Confidence 554
No 23
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.97 E-value=0.00083 Score=72.94 Aligned_cols=167 Identities=22% Similarity=0.300 Sum_probs=115.4
Q ss_pred EEEEecCCCcccCCCCCeEEEEeeeeeeeeeeeeccCCCCC---------CceEEecc-cCC---Cc---eEEEEEEeec
Q 003796 602 FSVKKHDTYDAPIKAKEELIFHVGFRQFVARPIFSSDNMNS---------DKHKMERF-LHA---GC---FSVASIYAPI 665 (795)
Q Consensus 602 ~~ikrh~~~~~~lKSkdpLi~s~GwRRFq~~PifS~~~~~~---------~r~k~~ky-~~~---~~---~~~AtfygPi 665 (795)
..++.-+.|.++|+||.-+-+++|+----+.-.|-. |+.+ ...-+|+= +|. +. ..+.+|=-||
T Consensus 296 ~~vepI~yfr~~i~sk~K~Hi~VgheTVMa~~~ff~-d~d~~~~tf~~~kEye~~E~d~~Pa~~~~~~~~~aL~~FEkpv 374 (522)
T KOG0461|consen 296 ATVEPIQYFRKSINSKSKIHIAVGHETVMAECQFFK-DTDGTTSTFQLDKEYENGEFDMLPALLAPCDVIQALFSFEKPV 374 (522)
T ss_pred EeecchHHHhhhhhhcceEEEEehhhhhhhheEEee-ccCCcccccccchhhhccccccChhhcCCchheeeeeeecccc
Confidence 345556688888999988888888866554444433 2111 11223321 222 22 4467888899
Q ss_pred CCCCccEE-EEEeCCCC--CCCeEEEEeEEeccCCc----------ceeEEeEEEEeeeeEEeee-eEEEeecCCChhhc
Q 003796 666 CFPPLPLI-VLKSADGG--VAPAVAAVGSLRSIDPD----------RIILKKIVLTGYPQRVSKL-KAIVRYMFHNPEDV 731 (795)
Q Consensus 666 ~~~~t~vl-~f~~~~~~--~~~ri~atG~vl~~d~~----------r~IvKklkLtG~P~KI~K~-tA~Ir~MF~n~~dV 731 (795)
..|+-..+ +=+-..+. .+-|++.+|-+.-.-|+ +.|.||=-=.||--++.+- .|++++||--.--.
T Consensus 375 ~~P~~s~~i~s~ld~d~h~~~CRlAF~Gi~~~~l~~~~y~~~~LP~lrifkrK~k~G~veRv~~d~svI~~~lFK~etn~ 454 (522)
T KOG0461|consen 375 FLPEYSNPIMSALDEDQHGSGCRLAFSGIFSQILPESKYNGKNLPPLRIFKRKCKKGHVERVEKDFSVICTGLFKAETNF 454 (522)
T ss_pred cCcccccHHHHhhhhhcCCCceEEEeeeehhhhCcccccccccCCchhhhhhhhcccchhhhhccHHHHHhhhhcccccc
Confidence 88873322 22222222 57899999998766655 4455555556766666655 45679999988888
Q ss_pred cccccceeeecccccceeeCCCCCCceeEEEecccccc
Q 003796 732 RWFKPVEVWTKCGRRGRIKEPVGTHGAMKCVFNGILQQ 769 (795)
Q Consensus 732 ~~Fk~a~L~TksGirG~IK~~lgt~G~fka~Fe~~i~~ 769 (795)
.-|.|-++.+.+|-||.|-.+.|..|.||.+|-++|..
T Consensus 455 dlfvG~~v~lStGe~G~Ie~aFGqsgKf~itf~~~lsp 492 (522)
T KOG0461|consen 455 DLFVGFQVCLSTGERGKIEGAFGQSGKFRITFAEKLSP 492 (522)
T ss_pred ceeeeeEEEeccCCccceeccccCcceEEEEecccCCh
Confidence 89999999999999999999999999999999999864
No 24
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=97.90 E-value=0.00024 Score=72.94 Aligned_cols=113 Identities=12% Similarity=0.130 Sum_probs=80.0
Q ss_pred eeEEEEeCCCCC---hHHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchh-h
Q 003796 123 LRTSVLQAPHGD---LVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLK-K 198 (795)
Q Consensus 123 ~Ritfie~~~~d---l~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~~~K-k 198 (795)
++++|+.+| .. +..++.++..+|.+|||+|++.+ .....++++|..+...|++.++.|++.+|...+ +
T Consensus 83 ~~i~~iDtP-G~~~~~~~~~~~~~~~D~~llVvd~~~~-------~~~~~t~~~l~~~~~~~~~~iiivvNK~Dl~~~~~ 154 (203)
T cd01888 83 RHVSFVDCP-GHEILMATMLSGAAVMDGALLLIAANEP-------CPQPQTSEHLAALEIMGLKHIIIVQNKIDLVKEEQ 154 (203)
T ss_pred cEEEEEECC-ChHHHHHHHHHhhhcCCEEEEEEECCCC-------CCCcchHHHHHHHHHcCCCcEEEEEEchhccCHHH
Confidence 689999998 43 56778889999999999999852 245567889998988999989999999996111 2
Q ss_pred hHHHHHHHHhhcccccCCCCeeEEeCC--HHHHHHHHHHHhhccccC
Q 003796 199 RKDLKKMCISSLTSEFPEDCKFYAADT--KDELHKFLWLFKEQRLTV 243 (795)
Q Consensus 199 ~~~~kK~lk~~f~~ef~~~~Klf~l~~--~~E~~nL~R~Is~~k~r~ 243 (795)
.....+.++..+......+..+|.+|. ...+..|...|...-+.|
T Consensus 155 ~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~~ 201 (203)
T cd01888 155 ALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPTP 201 (203)
T ss_pred HHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCCC
Confidence 233445555555543334567888884 334666777776655544
No 25
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=97.87 E-value=0.0006 Score=69.96 Aligned_cols=137 Identities=14% Similarity=0.102 Sum_probs=91.4
Q ss_pred EEEEEecCCCccChhhHHHHHHHhhccC-----------CC--C--CcceEEE-----ecCceeeEEEEeCCCC--C-hH
Q 003796 80 RVIVLFGLSASVNLNSVREDLLRQLSSE-----------GT--G--ALSSTVS-----SSKYRLRTSVLQAPHG--D-LV 136 (795)
Q Consensus 80 ~iV~Vvg~~~~~~~~sl~~~lvk~~~~~-----------~~--~--~g~~tv~-----~~r~k~Ritfie~~~~--d-l~ 136 (795)
.-|+|+|-.+.+.. +|++.|+...... +. . ..-+|+. ....++.++|+.+| + + +.
T Consensus 3 ~ni~iiGh~~~GKT-TL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtP-G~~~~~~ 80 (195)
T cd01884 3 VNVGTIGHVDHGKT-TLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCP-GHADYIK 80 (195)
T ss_pred EEEEEECCCCCCHH-HHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECc-CHHHHHH
Confidence 34899999887764 6655555432111 00 0 1112221 22235789999998 5 3 46
Q ss_pred HHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc-chhhh-HHHHHHHHhhccccc
Q 003796 137 GCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT-DLKKR-KDLKKMCISSLTSEF 214 (795)
Q Consensus 137 ~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~-~~Kk~-~~~kK~lk~~f~~ef 214 (795)
.++.++..||.+|||+|++.| +...+.++++.+..+|+|.+|.|++.+|. ....+ ..+++.+++++...-
T Consensus 81 ~~~~~~~~~D~~ilVvda~~g--------~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g 152 (195)
T cd01884 81 NMITGAAQMDGAILVVSATDG--------PMPQTREHLLLARQVGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYG 152 (195)
T ss_pred HHHHHhhhCCEEEEEEECCCC--------CcHHHHHHHHHHHHcCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhc
Confidence 688889999999999999955 77889999999999999999999999985 11222 235556666665432
Q ss_pred C--CCCeeEEeCCH
Q 003796 215 P--EDCKFYAADTK 226 (795)
Q Consensus 215 ~--~~~Klf~l~~~ 226 (795)
+ .+..++++|..
T Consensus 153 ~~~~~v~iipiSa~ 166 (195)
T cd01884 153 FDGDNTPIVRGSAL 166 (195)
T ss_pred ccccCCeEEEeeCc
Confidence 2 35778888853
No 26
>CHL00189 infB translation initiation factor 2; Provisional
Probab=97.74 E-value=0.0013 Score=79.79 Aligned_cols=198 Identities=11% Similarity=0.126 Sum_probs=111.9
Q ss_pred CCCEEEEEecCCCccChhhHHHHHHHhhccCCCC---C-------cceEEEec--CceeeEEEEeCCC-CChHHHHH-HH
Q 003796 77 SPPRVIVLFGLSASVNLNSVREDLLRQLSSEGTG---A-------LSSTVSSS--KYRLRTSVLQAPH-GDLVGCME-MA 142 (795)
Q Consensus 77 ~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~---~-------g~~tv~~~--r~k~Ritfie~~~-~dl~~~LD-~a 142 (795)
..|.+|+|+|..+.+.. +| +..++..... . +...+... ....+|+|+.+|- .++..|.. .+
T Consensus 242 ~r~p~V~IvGhvdvGKT-SL----ld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~ 316 (742)
T CHL00189 242 NRPPIVTILGHVDHGKT-TL----LDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGA 316 (742)
T ss_pred ccCCEEEEECCCCCCHH-HH----HHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHH
Confidence 35668999999988775 67 4444332211 1 22222221 1247899999982 24555554 78
Q ss_pred hhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchhhhHHHHHHHHhh--cccccCCCCee
Q 003796 143 KVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKKRKDLKKMCISS--LTSEFPEDCKF 220 (795)
Q Consensus 143 KvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~~~Kk~~~~kK~lk~~--f~~ef~~~~Kl 220 (795)
..||++|||+|+..| ....+++.|..++..|+| +|.|++.+|........++..|..+ +...+.....+
T Consensus 317 ~~aDiaILVVDA~dG--------v~~QT~E~I~~~k~~~iP-iIVViNKiDl~~~~~e~v~~eL~~~~ll~e~~g~~vpv 387 (742)
T CHL00189 317 NVTDIAILIIAADDG--------VKPQTIEAINYIQAANVP-IIVAINKIDKANANTERIKQQLAKYNLIPEKWGGDTPM 387 (742)
T ss_pred HHCCEEEEEEECcCC--------CChhhHHHHHHHHhcCce-EEEEEECCCccccCHHHHHHHHHHhccchHhhCCCceE
Confidence 999999999999865 667899999999999999 7778898885112223344545432 11222223578
Q ss_pred EEeCCH--HHHHHHHHHHhhccc-cCcccccCCCeEEEEeeEeccCCCCCCCceEEEEEEEeCCCCCCCCeEEeCC
Q 003796 221 YAADTK--DELHKFLWLFKEQRL-TVPHWRNQRPFLMAQKVDVVADDCNSGKCTLLLHGYLRAHCLSVNQLVHISG 293 (795)
Q Consensus 221 f~l~~~--~E~~nL~R~Is~~k~-r~l~WR~~rpYmLadr~e~~~~~~~~~~~~l~v~GyvRG~~l~~n~lVHIpG 293 (795)
+.+|.. ..+..|+-.|+.... ..+.-....| ..+.-++..-+ ...-.+++|-|....|++|..|.+..
T Consensus 388 v~VSAktG~GIdeLle~I~~l~e~~~lk~~~~~~-~~g~V~e~~iD----~~~G~V~~~~V~sGtLr~GD~vv~g~ 458 (742)
T CHL00189 388 IPISASQGTNIDKLLETILLLAEIEDLKADPTQL-AQGIILEAHLD----KTKGPVATILVQNGTLHIGDIIVIGT 458 (742)
T ss_pred EEEECCCCCCHHHHHHhhhhhhhhhcccCCCCCC-ceEEEEEEEEc----CCCceEEEEEEEcCEEecCCEEEECC
Confidence 888842 224444444433211 0111111111 11211221111 12335677777666688888886654
No 27
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=97.67 E-value=0.0044 Score=73.94 Aligned_cols=210 Identities=12% Similarity=0.091 Sum_probs=134.6
Q ss_pred EEEEEecCCCccChhhHHHHHHHhh---ccCC-CC-----------CcceEEEe-----cCceeeEEEEeCCC-CChH-H
Q 003796 80 RVIVLFGLSASVNLNSVREDLLRQL---SSEG-TG-----------ALSSTVSS-----SKYRLRTSVLQAPH-GDLV-G 137 (795)
Q Consensus 80 ~iV~Vvg~~~~~~~~sl~~~lvk~~---~~~~-~~-----------~g~~tv~~-----~r~k~Ritfie~~~-~dl~-~ 137 (795)
+-|+|+|..+.+++ +|+..|+..- .... .. +.-+|+.+ .-...+|+|+-+|- .|+. .
T Consensus 2 RNIaIiGHvd~GKT-TLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~e 80 (594)
T TIGR01394 2 RNIAIIAHVDHGKT-TLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGE 80 (594)
T ss_pred cEEEEEcCCCCCHH-HHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHH
Confidence 45899999887775 6655556421 1110 00 01233322 11257899999973 3443 5
Q ss_pred HHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchhhhHHHHHHHHhhcccccCC-
Q 003796 138 CMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKKRKDLKKMCISSLTSEFPE- 216 (795)
Q Consensus 138 ~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~~~Kk~~~~kK~lk~~f~~ef~~- 216 (795)
+.-+++.||.+|||+||+.| ....+.+.|..+...|+|. |.|++.+|........+...++..|...-.+
T Consensus 81 v~~~l~~aD~alLVVDa~~G--------~~~qT~~~l~~a~~~~ip~-IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~ 151 (594)
T TIGR01394 81 VERVLGMVDGVLLLVDASEG--------PMPQTRFVLKKALELGLKP-IVVINKIDRPSARPDEVVDEVFDLFAELGADD 151 (594)
T ss_pred HHHHHHhCCEEEEEEeCCCC--------CcHHHHHHHHHHHHCCCCE-EEEEECCCCCCcCHHHHHHHHHHHHHhhcccc
Confidence 67788999999999999865 5667889999999999994 6789998851122223445555554321010
Q ss_pred ---CCeeEEeCCHH------------HHHHHHHHHhhccccCcccccCCCeEEEEeeEeccCCCCCCCceEEEEEEEeCC
Q 003796 217 ---DCKFYAADTKD------------ELHKFLWLFKEQRLTVPHWRNQRPFLMAQKVDVVADDCNSGKCTLLLHGYLRAH 281 (795)
Q Consensus 217 ---~~Klf~l~~~~------------E~~nL~R~Is~~k~r~l~WR~~rpYmLadr~e~~~~~~~~~~~~l~v~GyvRG~ 281 (795)
...+++.|..+ .+..|+..|...-|.|...-+...-|++.++.+.+. .|. .++|-|...
T Consensus 152 e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P~~~~~~pl~~~V~~i~~d~~-----~Gr-v~~gRV~sG 225 (594)
T TIGR01394 152 EQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAPKGDLDEPLQMLVTNLDYDEY-----LGR-IAIGRVHRG 225 (594)
T ss_pred ccccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCCCCCCCCCCCEEEEEEEEEeeCC-----Cce-EEEEEEEeC
Confidence 23467777433 366888888888787765444444577777776543 354 478888888
Q ss_pred CCCCCCeEEeCCC-Cc---eeeceeecc
Q 003796 282 CLSVNQLVHISGA-GD---FQLGKIEIL 305 (795)
Q Consensus 282 ~l~~n~lVHIpG~-GD---fqi~~I~~~ 305 (795)
.|++|+.|.+..- |. ..|.+|...
T Consensus 226 ~lk~G~~V~~~~~~~~~~~~kV~~i~~~ 253 (594)
T TIGR01394 226 TVKKGQQVALMKRDGTIENGRISKLLGF 253 (594)
T ss_pred EEccCCEEEEecCCCceeEEEEEEEEEc
Confidence 8999999998765 43 456666543
No 28
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=97.65 E-value=0.0017 Score=62.73 Aligned_cols=131 Identities=15% Similarity=0.136 Sum_probs=83.7
Q ss_pred EEEEecCCCccChhhHHHHHHHhhccCCCC----C---------cceEEEecCceeeEEEEeCCCC-Ch-HHHHHHHhhh
Q 003796 81 VIVLFGLSASVNLNSVREDLLRQLSSEGTG----A---------LSSTVSSSKYRLRTSVLQAPHG-DL-VGCMEMAKVA 145 (795)
Q Consensus 81 iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~----~---------g~~tv~~~r~k~Ritfie~~~~-dl-~~~LD~aKvA 145 (795)
+|+|+|.++.+.. +| ++.|++.... . +..++..+. ...++|+.+|-. ++ ..++..+.-|
T Consensus 2 ~i~i~G~~~~GKs-sl----~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~a 75 (164)
T cd04171 2 IIGTAGHIDHGKT-TL----IKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGI 75 (164)
T ss_pred EEEEEecCCCCHH-HH----HHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcC
Confidence 6899999998875 77 5555432210 0 111222221 357888988731 22 3456677789
Q ss_pred ceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchh-hhHHHHHHHHhhcccccCCCCeeEEeC
Q 003796 146 DLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLK-KRKDLKKMCISSLTSEFPEDCKFYAAD 224 (795)
Q Consensus 146 DlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~~~K-k~~~~kK~lk~~f~~ef~~~~Klf~l~ 224 (795)
|.+|+|+|++.+ +..+.++.+..++..|.+.++.|++..|.... ......+.++..+......+..+|.+|
T Consensus 76 d~ii~V~d~~~~--------~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 147 (164)
T cd04171 76 DLVLLVVAADEG--------IMPQTREHLEILELLGIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVS 147 (164)
T ss_pred CEEEEEEECCCC--------ccHhHHHHHHHHHHhCCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEe
Confidence 999999999843 56677788888888898778899999885112 223344555555544322357888888
Q ss_pred C
Q 003796 225 T 225 (795)
Q Consensus 225 ~ 225 (795)
.
T Consensus 148 a 148 (164)
T cd04171 148 A 148 (164)
T ss_pred C
Confidence 4
No 29
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=97.64 E-value=0.003 Score=77.23 Aligned_cols=203 Identities=16% Similarity=0.207 Sum_probs=117.7
Q ss_pred CCCEEEEEecCCCccChhhHHHHHHHhhccCCCC---C-------cceEEEecCceeeEEEEeCCC-CChHHHHH-HHhh
Q 003796 77 SPPRVIVLFGLSASVNLNSVREDLLRQLSSEGTG---A-------LSSTVSSSKYRLRTSVLQAPH-GDLVGCME-MAKV 144 (795)
Q Consensus 77 ~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~---~-------g~~tv~~~r~k~Ritfie~~~-~dl~~~LD-~aKv 144 (795)
.-|-+|+|+|..+.+.+ +| +..|+..... . |..++..+ .++|+|+.+|- .++..|.. .+.+
T Consensus 288 ~R~pvV~ImGhvd~GKT-SL----l~~Lr~~~v~~~e~~GIT~~iga~~v~~~--~~~ItfiDTPGhe~F~~m~~rga~~ 360 (787)
T PRK05306 288 PRPPVVTIMGHVDHGKT-SL----LDAIRKTNVAAGEAGGITQHIGAYQVETN--GGKITFLDTPGHEAFTAMRARGAQV 360 (787)
T ss_pred cCCCEEEEECCCCCCHH-HH----HHHHHhCCccccccCceeeeccEEEEEEC--CEEEEEEECCCCccchhHHHhhhhh
Confidence 45566999999887775 67 5544432221 1 22333333 36899999873 45666665 6899
Q ss_pred hceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchhhhHHHHHHHHhh--cccccCCCCeeEE
Q 003796 145 ADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKKRKDLKKMCISS--LTSEFPEDCKFYA 222 (795)
Q Consensus 145 ADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~~~Kk~~~~kK~lk~~--f~~ef~~~~Klf~ 222 (795)
||++|||+|+..| ...++++.|+.+...|+| +|.|++.+|........++..|... +-..+.....+|.
T Consensus 361 aDiaILVVdAddG--------v~~qT~e~i~~a~~~~vP-iIVviNKiDl~~a~~e~V~~eL~~~~~~~e~~g~~vp~vp 431 (787)
T PRK05306 361 TDIVVLVVAADDG--------VMPQTIEAINHAKAAGVP-IIVAINKIDKPGANPDRVKQELSEYGLVPEEWGGDTIFVP 431 (787)
T ss_pred CCEEEEEEECCCC--------CCHhHHHHHHHHHhcCCc-EEEEEECccccccCHHHHHHHHHHhcccHHHhCCCceEEE
Confidence 9999999999865 667899999999999999 8888998885111112344433321 1112223467888
Q ss_pred eCCH--HHHHHHHHHHhhc----cccCcccccCCCeEEEEeeEeccCCCCCCCceEEEEEEEeCCCCCCCCeEEeCCCCc
Q 003796 223 ADTK--DELHKFLWLFKEQ----RLTVPHWRNQRPFLMAQKVDVVADDCNSGKCTLLLHGYLRAHCLSVNQLVHISGAGD 296 (795)
Q Consensus 223 l~~~--~E~~nL~R~Is~~----k~r~l~WR~~rpYmLadr~e~~~~~~~~~~~~l~v~GyvRG~~l~~n~lVHIpG~GD 296 (795)
+|.. .-+..|+..|... ..+.-. +..+-..+.+....+ ....+++|-|....|++|..|.+ |.
T Consensus 432 vSAktG~GI~eLle~I~~~~e~~~l~~~~--~~~~~g~V~es~~dk------g~G~v~~v~V~sGtLk~Gd~vv~---g~ 500 (787)
T PRK05306 432 VSAKTGEGIDELLEAILLQAEVLELKANP--DRPARGTVIEAKLDK------GRGPVATVLVQNGTLKVGDIVVA---GT 500 (787)
T ss_pred EeCCCCCCchHHHHhhhhhhhhhhcccCC--CCCcEEEEEEEEEcC------CCeEEEEEEEecCeEecCCEEEE---CC
Confidence 8842 2233344444321 111100 111222333322221 23456888888778999888766 22
Q ss_pred eeeceeeccCC
Q 003796 297 FQLGKIEILKD 307 (795)
Q Consensus 297 fqi~~I~~~~d 307 (795)
...+|..+-+
T Consensus 501 -~~gkVr~m~~ 510 (787)
T PRK05306 501 -TYGRVRAMVD 510 (787)
T ss_pred -cEEEEEEEEC
Confidence 3456655543
No 30
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=97.63 E-value=0.0045 Score=70.63 Aligned_cols=169 Identities=13% Similarity=0.097 Sum_probs=107.3
Q ss_pred eeeEEEEeCCCC--Ch-HHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc-chh
Q 003796 122 RLRTSVLQAPHG--DL-VGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT-DLK 197 (795)
Q Consensus 122 k~Ritfie~~~~--dl-~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~-~~K 197 (795)
+++++|+.+| . ++ ..|+.++..||.+|||+||+.| +...+.+.+.++...|+|.++.|++.+|. +..
T Consensus 79 ~~~~~liDtP-Gh~~f~~~~~~~~~~aD~allVVda~~G--------~~~qt~~~~~~~~~~~~~~iivviNK~D~~~~~ 149 (406)
T TIGR02034 79 KRKFIVADTP-GHEQYTRNMATGASTADLAVLLVDARKG--------VLEQTRRHSYIASLLGIRHVVLAVNKMDLVDYD 149 (406)
T ss_pred CeEEEEEeCC-CHHHHHHHHHHHHhhCCEEEEEEECCCC--------CccccHHHHHHHHHcCCCcEEEEEEecccccch
Confidence 5789999998 4 44 5789999999999999999965 66678899999999999999999999985 111
Q ss_pred h--hHHHHHHHHhhcccccCCCCeeEEeCCHH--------------HHHHHHHHHhhccccCcccccCCCeEEEEeeEec
Q 003796 198 K--RKDLKKMCISSLTSEFPEDCKFYAADTKD--------------ELHKFLWLFKEQRLTVPHWRNQRPFLMAQKVDVV 261 (795)
Q Consensus 198 k--~~~~kK~lk~~f~~ef~~~~Klf~l~~~~--------------E~~nL~R~Is~~k~r~l~WR~~rpYmLadr~e~~ 261 (795)
. ....+..++.++...-.....++++|..+ +.-.|+-.|....+ |....+.-..|.++++.-.
T Consensus 150 ~~~~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~~~~~~~wy~g~tL~~~L~~~~~-~~~~~~~p~r~~i~~v~~~ 228 (406)
T TIGR02034 150 EEVFENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVSRSESMPWYSGPTLLEILETVEV-ERDAQDLPLRFPVQYVNRP 228 (406)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCccEEEeecccCCCCcccccCCCccchhHHHHHHHhcCC-CCCcCCCCcccceEEEeec
Confidence 1 12234444433332212245688887311 12346666665533 2233333333545554211
Q ss_pred cCCCCCCCceEEEEEEEeCCCCCCCCeEEe-CCCCceeeceeeccC
Q 003796 262 ADDCNSGKCTLLLHGYLRAHCLSVNQLVHI-SGAGDFQLGKIEILK 306 (795)
Q Consensus 262 ~~~~~~~~~~l~v~GyvRG~~l~~n~lVHI-pG~GDfqi~~I~~~~ 306 (795)
. ....-+.|.|...-+++|+.|.| |+-=..+|.+|..-.
T Consensus 229 ~------~~~~g~~G~v~~G~l~~gd~v~i~P~~~~~~VksI~~~~ 268 (406)
T TIGR02034 229 N------LDFRGYAGTIASGSVHVGDEVVVLPSGRSSRVARIVTFD 268 (406)
T ss_pred C------CCcEEEEEEEecceeecCCEEEEeCCCcEEEEEEEEECC
Confidence 0 00112678888888999988885 653356677776543
No 31
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=97.60 E-value=0.0045 Score=73.74 Aligned_cols=194 Identities=16% Similarity=0.162 Sum_probs=116.2
Q ss_pred CCEEEEEecCCCccChhhHHHHHHHhhccCCCCC---cceE-------EEecCceeeEEEEeCCC-CChHHHHH-HHhhh
Q 003796 78 PPRVIVLFGLSASVNLNSVREDLLRQLSSEGTGA---LSST-------VSSSKYRLRTSVLQAPH-GDLVGCME-MAKVA 145 (795)
Q Consensus 78 pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~~---g~~t-------v~~~r~k~Ritfie~~~-~dl~~~LD-~aKvA 145 (795)
-|.+|+|+|..+.+.+ +| +..|++..... +.+| +.... .++++|+.+|- .++..|.. .+..|
T Consensus 86 r~p~V~I~Ghvd~GKT-SL----l~~l~~~~v~~~e~~GIT~~ig~~~v~~~~-~~~i~~iDTPGhe~F~~~r~rga~~a 159 (587)
T TIGR00487 86 RPPVVTIMGHVDHGKT-SL----LDSIRKTKVAQGEAGGITQHIGAYHVENED-GKMITFLDTPGHEAFTSMRARGAKVT 159 (587)
T ss_pred CCCEEEEECCCCCCHH-HH----HHHHHhCCcccccCCceeecceEEEEEECC-CcEEEEEECCCCcchhhHHHhhhccC
Confidence 3446899999998876 67 55554432211 2233 33222 23899999973 35666655 68999
Q ss_pred ceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchhhhHHHHHHHHhh-cc-cccCCCCeeEEe
Q 003796 146 DLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKKRKDLKKMCISS-LT-SEFPEDCKFYAA 223 (795)
Q Consensus 146 DlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~~~Kk~~~~kK~lk~~-f~-~ef~~~~Klf~l 223 (795)
|++||++|+..| ....+.+.|+.+...|+| ++.+++.+|........+++.++.. +. ..+.....+|..
T Consensus 160 DiaILVVda~dg--------v~~qT~e~i~~~~~~~vP-iIVviNKiDl~~~~~e~v~~~L~~~g~~~~~~~~~~~~v~i 230 (587)
T TIGR00487 160 DIVVLVVAADDG--------VMPQTIEAISHAKAANVP-IIVAINKIDKPEANPDRVKQELSEYGLVPEDWGGDTIFVPV 230 (587)
T ss_pred CEEEEEEECCCC--------CCHhHHHHHHHHHHcCCC-EEEEEECcccccCCHHHHHHHHHHhhhhHHhcCCCceEEEE
Confidence 999999999854 677889999999999999 7888898885111122344444432 11 122323578888
Q ss_pred CC--HHHHHHHHHHHhhccc-cCccc-ccCCCeEEEEeeEeccCCCCCCCceEEEEEEEeCCCCCCCCeEEeC
Q 003796 224 DT--KDELHKFLWLFKEQRL-TVPHW-RNQRPFLMAQKVDVVADDCNSGKCTLLLHGYLRAHCLSVNQLVHIS 292 (795)
Q Consensus 224 ~~--~~E~~nL~R~Is~~k~-r~l~W-R~~rpYmLadr~e~~~~~~~~~~~~l~v~GyvRG~~l~~n~lVHIp 292 (795)
|. -.-+..|+..|..+.. ..+.- .+...-+.+.++...+. .-.+++|-|+...|++|..|.+.
T Consensus 231 SAktGeGI~eLl~~I~~~~~~~~l~~~~~~~~~~~V~ev~~~~g------~G~v~~~~V~~GtL~~Gd~iv~~ 297 (587)
T TIGR00487 231 SALTGDGIDELLDMILLQSEVEELKANPNGQASGVVIEAQLDKG------RGPVATVLVQSGTLRVGDIVVVG 297 (587)
T ss_pred ECCCCCChHHHHHhhhhhhhhccccCCCCCCceeEEEEEEEeCC------CcEEEEEEEEeCEEeCCCEEEEC
Confidence 73 2224444444432210 01100 12334445555554321 23568888988889999888764
No 32
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=97.57 E-value=0.0064 Score=69.67 Aligned_cols=171 Identities=15% Similarity=0.139 Sum_probs=108.0
Q ss_pred eeeEEEEeCCC-CCh-HHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc-ch-h
Q 003796 122 RLRTSVLQAPH-GDL-VGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT-DL-K 197 (795)
Q Consensus 122 k~Ritfie~~~-~dl-~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~-~~-K 197 (795)
+.+++|+.+|- .++ ..|+..++-||.+|||+|++.. .++...+.+.+..+...|.|.++.|++.+|. +. .
T Consensus 83 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~------~~~~~~~~~~~~~~~~~~~~~iivviNK~Dl~~~~~ 156 (425)
T PRK12317 83 KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDA------GGVMPQTREHVFLARTLGINQLIVAINKMDAVNYDE 156 (425)
T ss_pred CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccC------CCCCcchHHHHHHHHHcCCCeEEEEEEccccccccH
Confidence 56899999872 344 4577888999999999999850 1366677888888899999989999999885 11 1
Q ss_pred h-hHHHHHHHHhhcccc-cC-CCCeeEEeCCH-----HH---------HHHHHHHHhhccccCcccccCCCeEEEEeeEe
Q 003796 198 K-RKDLKKMCISSLTSE-FP-EDCKFYAADTK-----DE---------LHKFLWLFKEQRLTVPHWRNQRPFLMAQKVDV 260 (795)
Q Consensus 198 k-~~~~kK~lk~~f~~e-f~-~~~Klf~l~~~-----~E---------~~nL~R~Is~~k~r~l~WR~~rpYmLadr~e~ 260 (795)
. ...+++.++.++... +. ....+|.+|.. .+ ...|+-.|....+ |-.+-+.-..|.++++-.
T Consensus 157 ~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~~~~~wy~g~~L~~~l~~~~~-~~~~~~~p~r~~i~~~~~ 235 (425)
T PRK12317 157 KRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKSENMPWYNGPTLLEALDNLKP-PEKPTDKPLRIPIQDVYS 235 (425)
T ss_pred HHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccccccCCCcccHHHHHHHHhcCCC-CccccCCCcEEEEEEEEe
Confidence 1 123445555554332 11 13568887731 11 1134455544332 323323333466666554
Q ss_pred ccCCCCCCCceEEEEEEEeCCCCCCCCeEEe-CCCCceeeceeecc
Q 003796 261 VADDCNSGKCTLLLHGYLRAHCLSVNQLVHI-SGAGDFQLGKIEIL 305 (795)
Q Consensus 261 ~~~~~~~~~~~l~v~GyvRG~~l~~n~lVHI-pG~GDfqi~~I~~~ 305 (795)
... .| .+++|.|....+++|..|.| |+--..+|.+|+.-
T Consensus 236 ~~g-----~G-~vv~G~v~~G~v~~Gd~v~i~P~~~~~~VksI~~~ 275 (425)
T PRK12317 236 ISG-----VG-TVPVGRVETGVLKVGDKVVFMPAGVVGEVKSIEMH 275 (425)
T ss_pred eCC-----Ce-EEEEEEEeeccEecCCEEEECCCCCeEEEEEEEEC
Confidence 321 23 57799999999999999987 54335777777654
No 33
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=97.51 E-value=0.0028 Score=66.50 Aligned_cols=80 Identities=15% Similarity=0.133 Sum_probs=59.4
Q ss_pred eeeEEEEeCCCCC---hHHHHHHHh--hhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcch
Q 003796 122 RLRTSVLQAPHGD---LVGCMEMAK--VADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDL 196 (795)
Q Consensus 122 k~Ritfie~~~~d---l~~~LD~aK--vADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~~~ 196 (795)
.+.++|+.+| .. +..++-++. .+|++|+|+|+..| +...+.+++..++.+|+| ++.|++.+|.-.
T Consensus 83 ~~~i~liDtp-G~~~~~~~~~~~~~~~~~D~~llVvda~~g--------~~~~d~~~l~~l~~~~ip-~ivvvNK~D~~~ 152 (224)
T cd04165 83 SKLVTFIDLA-GHERYLKTTLFGLTGYAPDYAMLVVAANAG--------IIGMTKEHLGLALALNIP-VFVVVTKIDLAP 152 (224)
T ss_pred CcEEEEEECC-CcHHHHHHHHHhhcccCCCEEEEEEECCCC--------CcHHHHHHHHHHHHcCCC-EEEEEECccccC
Confidence 4689999998 54 344555553 79999999999865 677889999999999999 788899988511
Q ss_pred h-hhHHHHHHHHhhcc
Q 003796 197 K-KRKDLKKMCISSLT 211 (795)
Q Consensus 197 K-k~~~~kK~lk~~f~ 211 (795)
+ ....+++.+++.+.
T Consensus 153 ~~~~~~~~~~l~~~L~ 168 (224)
T cd04165 153 ANILQETLKDLKRILK 168 (224)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 2 23455666666554
No 34
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=97.49 E-value=0.012 Score=67.46 Aligned_cols=172 Identities=15% Similarity=0.208 Sum_probs=107.9
Q ss_pred eeeEEEEeCCC-CC-hHHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc-ch-h
Q 003796 122 RLRTSVLQAPH-GD-LVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT-DL-K 197 (795)
Q Consensus 122 k~Ritfie~~~-~d-l~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~-~~-K 197 (795)
+.+++|+.+|- .+ +..|+..++-||.+|||+|++.|. ......+.+.+.+++..|.+.++.|++.+|. +. .
T Consensus 84 ~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~-----~~~~~~t~~~~~~~~~~~~~~iIVviNK~Dl~~~~~ 158 (426)
T TIGR00483 84 KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGE-----FEVQPQTREHAFLARTLGINQLIVAINKMDSVNYDE 158 (426)
T ss_pred CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCC-----cccCCchHHHHHHHHHcCCCeEEEEEEChhccCccH
Confidence 46889999972 23 346788889999999999999651 0123456677777778899999999999885 11 1
Q ss_pred -hhHHHHHHHHhhcccc-c-CCCCeeEEeCCHHH--------------HHHHHHHHhhccccCcccccCCC-eEEEEeeE
Q 003796 198 -KRKDLKKMCISSLTSE-F-PEDCKFYAADTKDE--------------LHKFLWLFKEQRLTVPHWRNQRP-FLMAQKVD 259 (795)
Q Consensus 198 -k~~~~kK~lk~~f~~e-f-~~~~Klf~l~~~~E--------------~~nL~R~Is~~k~r~l~WR~~rp-YmLadr~e 259 (795)
....+++.++.++... + +....++.+|..+. ...|+..|-...+. -.. ...| -|.++++-
T Consensus 159 ~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~~~~~w~~g~~l~~~l~~~~~~-~~~-~~~p~r~~i~~v~ 236 (426)
T TIGR00483 159 EEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKSENTPWYKGKTLLEALDALEPP-EKP-TDKPLRIPIQDVY 236 (426)
T ss_pred HHHHHHHHHHHHHHHHcCCCcccceEEEeeccccccccccccCCccccchHHHHHHhcCCCC-CCc-cCCCcEEEEEEEE
Confidence 1223445555444332 1 12356777773211 12577777655432 222 3344 46667655
Q ss_pred eccCCCCCCCceEEEEEEEeCCCCCCCCeEEeCCCC-ceeeceeeccC
Q 003796 260 VVADDCNSGKCTLLLHGYLRAHCLSVNQLVHISGAG-DFQLGKIEILK 306 (795)
Q Consensus 260 ~~~~~~~~~~~~l~v~GyvRG~~l~~n~lVHIpG~G-Dfqi~~I~~~~ 306 (795)
..+. .| .+++|.|....+++|+.|.|.-.| ..+|.+|+.-.
T Consensus 237 ~~~g-----~G-~vv~G~v~~G~i~~gd~v~i~P~~~~~~VksI~~~~ 278 (426)
T TIGR00483 237 SITG-----VG-TVPVGRVETGVLKPGDKVVFEPAGVSGEVKSIEMHH 278 (426)
T ss_pred ecCC-----Ce-EEEEEEEccceeecCCEEEECCCCcEEEEEEEEECC
Confidence 4332 24 468999999999999999884434 46677776543
No 35
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=97.42 E-value=0.008 Score=69.95 Aligned_cols=173 Identities=12% Similarity=0.053 Sum_probs=108.1
Q ss_pred eeeEEEEeCCC-CCh-HHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcc-hhh
Q 003796 122 RLRTSVLQAPH-GDL-VGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTD-LKK 198 (795)
Q Consensus 122 k~Ritfie~~~-~dl-~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~~-~Kk 198 (795)
++.++|+.+|- .++ ..|+-.++.||++|||+||..| +...+.+.+.++...|++.++.|++.+|.. ...
T Consensus 106 ~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G--------~~~qt~~~~~l~~~lg~~~iIvvvNKiD~~~~~~ 177 (474)
T PRK05124 106 KRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKG--------VLDQTRRHSFIATLLGIKHLVVAVNKMDLVDYSE 177 (474)
T ss_pred CcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCC--------ccccchHHHHHHHHhCCCceEEEEEeeccccchh
Confidence 46899999872 244 4688889999999999999965 555677888888899999999999999851 111
Q ss_pred --hHHHHHHHHhhcccc-cCCCCeeEEeCCH-----HH---------HHHHHHHHhhccccCcccccCCCeEEEEeeEec
Q 003796 199 --RKDLKKMCISSLTSE-FPEDCKFYAADTK-----DE---------LHKFLWLFKEQRLTVPHWRNQRPFLMAQKVDVV 261 (795)
Q Consensus 199 --~~~~kK~lk~~f~~e-f~~~~Klf~l~~~-----~E---------~~nL~R~Is~~k~r~l~WR~~rpYmLadr~e~~ 261 (795)
...+++.++.++... +.....++++|.. .+ ...|+-.|....+ |..+.+.-..|.++++.-.
T Consensus 178 ~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~~~~~~wy~G~tLl~~L~~i~~-~~~~~~~p~r~~I~~v~~~ 256 (474)
T PRK05124 178 EVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQSESMPWYSGPTLLEVLETVDI-QRVVDAQPFRFPVQYVNRP 256 (474)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccccccccccchhhHHHHHhhcCC-CCCCCCCCceeeEEEEEec
Confidence 123444444433221 1125788888831 11 1235555554432 3344343344666665321
Q ss_pred cCCCCCCCceEEEEEEEeCCCCCCCCeEEeCCCC-ceeeceeeccCCCC
Q 003796 262 ADDCNSGKCTLLLHGYLRAHCLSVNQLVHISGAG-DFQLGKIEILKDPF 309 (795)
Q Consensus 262 ~~~~~~~~~~l~v~GyvRG~~l~~n~lVHIpG~G-Dfqi~~I~~~~dP~ 309 (795)
.- ..--+.|.|....+.+|..|.|--.| ..+|.+|..-..|+
T Consensus 257 ~~------~~~g~~G~V~sG~l~~Gd~v~i~P~~~~~~VksI~~~~~~v 299 (474)
T PRK05124 257 NL------DFRGYAGTLASGVVKVGDRVKVLPSGKESNVARIVTFDGDL 299 (474)
T ss_pred CC------cccceEEEEEeEEEecCCEEEEecCCceEEEEEEEEcCccc
Confidence 00 00115688887788999887665445 67888888665543
No 36
>PLN00043 elongation factor 1-alpha; Provisional
Probab=97.38 E-value=0.014 Score=67.39 Aligned_cols=172 Identities=15% Similarity=0.153 Sum_probs=109.2
Q ss_pred eeeEEEEeCCCC--C-hHHHHHHHhhhceEEEeeeCCCc-cccccccccC--hHHHHHHHHHHhcCCCceEEEeccCCc-
Q 003796 122 RLRTSVLQAPHG--D-LVGCMEMAKVADLVAFVASASSF-SEESMSYYID--SFGNQCLSVFRSLGLPSTAVLIRDLPT- 194 (795)
Q Consensus 122 k~Ritfie~~~~--d-l~~~LD~aKvADlVll~idas~g-~~~~~~~~fe--~eg~e~L~~l~aqG~P~vigVl~~Ld~- 194 (795)
+++++|+.+| . | +..|+-.+..||.+|||+||..| ++. +|+ ..+.+.+.++++.|+|.+|.+++.+|.
T Consensus 84 ~~~i~liDtP-Gh~df~~~~~~g~~~aD~aIlVVda~~G~~e~----g~~~~~qT~eh~~~~~~~gi~~iIV~vNKmD~~ 158 (447)
T PLN00043 84 KYYCTVIDAP-GHRDFIKNMITGTSQADCAVLIIDSTTGGFEA----GISKDGQTREHALLAFTLGVKQMICCCNKMDAT 158 (447)
T ss_pred CEEEEEEECC-CHHHHHHHHHhhhhhccEEEEEEEcccCceec----ccCCCchHHHHHHHHHHcCCCcEEEEEEcccCC
Confidence 5799999998 5 3 56788899999999999999965 111 122 688999999999999999999999984
Q ss_pred --ch-hh-hHHHHHHHHhhccccc--CCCCeeEEeCCHH--------H------HHHHHHHHhhccccCcccccCCCeEE
Q 003796 195 --DL-KK-RKDLKKMCISSLTSEF--PEDCKFYAADTKD--------E------LHKFLWLFKEQRLTVPHWRNQRPFLM 254 (795)
Q Consensus 195 --~~-Kk-~~~~kK~lk~~f~~ef--~~~~Klf~l~~~~--------E------~~nL~R~Is~~k~r~l~WR~~rpYmL 254 (795)
++ +. -..+.+.++.++...- +....++++|..+ + .-.|+-.|.... .|-.+.+.---|.
T Consensus 159 ~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~~~~~~~Wy~g~tLl~~l~~i~-~p~~~~~~plr~~ 237 (447)
T PLN00043 159 TPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQIN-EPKRPSDKPLRLP 237 (447)
T ss_pred chhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccccccCCcccchHHHHHHHhhcC-CCccccCCCcEEE
Confidence 11 11 2345666766665421 2235667776311 0 113555555443 2333333222344
Q ss_pred EEeeEeccCCCCCCCceEEEEEEEeCCCCCCCCeEEeCCCC-ceeeceeecc
Q 003796 255 AQKVDVVADDCNSGKCTLLLHGYLRAHCLSVNQLVHISGAG-DFQLGKIEIL 305 (795)
Q Consensus 255 adr~e~~~~~~~~~~~~l~v~GyvRG~~l~~n~lVHIpG~G-Dfqi~~I~~~ 305 (795)
++++-..+ ..| .+++|-|-...+++|..|-+.-.| -.+|.+|+.-
T Consensus 238 I~~v~~~~-----g~G-~vv~G~V~~G~l~~Gd~v~~~P~~~~~~VksI~~~ 283 (447)
T PLN00043 238 LQDVYKIG-----GIG-TVPVGRVETGVIKPGMVVTFGPTGLTTEVKSVEMH 283 (447)
T ss_pred EEEEEEeC-----CcE-EEEEEEEECCEEeeCCEEEEcCCCCEEEEEEEEEC
Confidence 44443222 134 467999988889999888775444 3566666643
No 37
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=97.35 E-value=0.0062 Score=59.28 Aligned_cols=143 Identities=12% Similarity=0.154 Sum_probs=84.8
Q ss_pred EEEEecCCCccChhhHHHHHHHhhccCCCCC----------cceEEEec-CceeeEEEEeCCCCC--hHHHHH-HHhhhc
Q 003796 81 VIVLFGLSASVNLNSVREDLLRQLSSEGTGA----------LSSTVSSS-KYRLRTSVLQAPHGD--LVGCME-MAKVAD 146 (795)
Q Consensus 81 iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~~----------g~~tv~~~-r~k~Ritfie~~~~d--l~~~LD-~aKvAD 146 (795)
+|+|+|+++.+.. +| +..|+...... +...+... .....++|+.+| .. +..+.+ ....||
T Consensus 2 ~i~iiG~~~~GKt-sl----i~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtp-G~~~~~~~~~~~~~~~d 75 (168)
T cd01887 2 VVTVMGHVDHGKT-TL----LDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTP-GHEAFTNMRARGASLTD 75 (168)
T ss_pred EEEEEecCCCCHH-HH----HHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCC-CcHHHHHHHHHHHhhcC
Confidence 3899999998876 67 44443322111 11222221 014688999998 43 444444 668999
Q ss_pred eEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchhhhHHHHHHHHhhccc---ccCCCCeeEEe
Q 003796 147 LVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKKRKDLKKMCISSLTS---EFPEDCKFYAA 223 (795)
Q Consensus 147 lVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~~~Kk~~~~kK~lk~~f~~---ef~~~~Klf~l 223 (795)
++|+++|++.+ ...+.++++..++..|.| ++.|++.+|........+...++.+... .+.....++..
T Consensus 76 ~il~v~d~~~~--------~~~~~~~~~~~~~~~~~p-~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (168)
T cd01887 76 IAILVVAADDG--------VMPQTIEAIKLAKAANVP-FIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPT 146 (168)
T ss_pred EEEEEEECCCC--------ccHHHHHHHHHHHHcCCC-EEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEe
Confidence 99999999854 456788899999999998 6778888885101112233333322211 12234577887
Q ss_pred CC--HHHHHHHHHHHhh
Q 003796 224 DT--KDELHKFLWLFKE 238 (795)
Q Consensus 224 ~~--~~E~~nL~R~Is~ 238 (795)
|. ...+..|.-.|..
T Consensus 147 Sa~~~~gi~~l~~~l~~ 163 (168)
T cd01887 147 SAKTGEGIDDLLEAILL 163 (168)
T ss_pred ecccCCCHHHHHHHHHH
Confidence 73 2335555555543
No 38
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=97.34 E-value=0.0044 Score=62.70 Aligned_cols=113 Identities=14% Similarity=0.157 Sum_probs=73.1
Q ss_pred eeeEEEEeCCCC--C-hHHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcc-hh
Q 003796 122 RLRTSVLQAPHG--D-LVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTD-LK 197 (795)
Q Consensus 122 k~Ritfie~~~~--d-l~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~~-~K 197 (795)
..+++|+.+| + + +..++.+++.||.|++|+|++.| ......+.+..++..|.| ++.|++.+|.. ..
T Consensus 67 ~~~~~i~Dtp-G~~~~~~~~~~~~~~~d~vi~VvD~~~~--------~~~~~~~~~~~~~~~~~~-~iiv~NK~Dl~~~~ 136 (192)
T cd01889 67 NLQITLVDCP-GHASLIRTIIGGAQIIDLMLLVVDATKG--------IQTQTAECLVIGEILCKK-LIVVLNKIDLIPEE 136 (192)
T ss_pred CceEEEEECC-CcHHHHHHHHHHHhhCCEEEEEEECCCC--------ccHHHHHHHHHHHHcCCC-EEEEEECcccCCHH
Confidence 4688999998 4 3 35566778899999999999854 444556666677777875 66788988851 11
Q ss_pred hhHHHHHHHHhhccccc----CCCCeeEEeCCH--HHHHHHHHHHhhccccCc
Q 003796 198 KRKDLKKMCISSLTSEF----PEDCKFYAADTK--DELHKFLWLFKEQRLTVP 244 (795)
Q Consensus 198 k~~~~kK~lk~~f~~ef----~~~~Klf~l~~~--~E~~nL~R~Is~~k~r~l 244 (795)
.+....+.++++|...+ ..+..+|++|.. .-+..|.-.|..+-+-|+
T Consensus 137 ~~~~~~~~~~~~l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~~~~ 189 (192)
T cd01889 137 ERERKIEKMKKKLQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLIVLPL 189 (192)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhcccccc
Confidence 22233444444333222 236789999853 336667777776666554
No 39
>PRK10218 GTP-binding protein; Provisional
Probab=97.32 E-value=0.022 Score=68.16 Aligned_cols=208 Identities=14% Similarity=0.092 Sum_probs=132.2
Q ss_pred EEEEEecCCCccChhhHHHHHHHh---hccCC-----------CC-CcceEEEe-----cCceeeEEEEeCCC-CCh-HH
Q 003796 80 RVIVLFGLSASVNLNSVREDLLRQ---LSSEG-----------TG-ALSSTVSS-----SKYRLRTSVLQAPH-GDL-VG 137 (795)
Q Consensus 80 ~iV~Vvg~~~~~~~~sl~~~lvk~---~~~~~-----------~~-~g~~tv~~-----~r~k~Ritfie~~~-~dl-~~ 137 (795)
+-|+|+|..+.+++ +|++.|+.. +.+.. .+ ..-+|+.+ .-...+|.++.+|- .++ ..
T Consensus 6 RnIaIiGh~d~GKT-TLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~~ 84 (607)
T PRK10218 6 RNIAIIAHVDHGKT-TLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGGE 84 (607)
T ss_pred eEEEEECCCCCcHH-HHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHHH
Confidence 56999999887775 665555532 11110 00 12234322 12257899999973 333 35
Q ss_pred HHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchhhhHHHHHHHHhhcccc-cC-
Q 003796 138 CMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKKRKDLKKMCISSLTSE-FP- 215 (795)
Q Consensus 138 ~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~~~Kk~~~~kK~lk~~f~~e-f~- 215 (795)
+..+++.||.+|||+|++.| ....+...+..+...|+|. +.|++.+|.....-..+...++..|... ..
T Consensus 85 v~~~l~~aDg~ILVVDa~~G--------~~~qt~~~l~~a~~~gip~-IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~ 155 (607)
T PRK10218 85 VERVMSMVDSVLLVVDAFDG--------PMPQTRFVTKKAFAYGLKP-IVVINKVDRPGARPDWVVDQVFDLFVNLDATD 155 (607)
T ss_pred HHHHHHhCCEEEEEEecccC--------ccHHHHHHHHHHHHcCCCE-EEEEECcCCCCCchhHHHHHHHHHHhccCccc
Confidence 67788999999999999965 5667888899999999996 5688988851122223444455554320 00
Q ss_pred --CCCeeEEeCCHH------------HHHHHHHHHhhccccCcccccCCCeEEEEeeEeccCCCCCCCceEEEEEEEeCC
Q 003796 216 --EDCKFYAADTKD------------ELHKFLWLFKEQRLTVPHWRNQRPFLMAQKVDVVADDCNSGKCTLLLHGYLRAH 281 (795)
Q Consensus 216 --~~~Klf~l~~~~------------E~~nL~R~Is~~k~r~l~WR~~rpYmLadr~e~~~~~~~~~~~~l~v~GyvRG~ 281 (795)
.+..+++.|..+ .+..|+-.|...-|.|....+.-.-|++.++.+.+. .|++ ++|-|-..
T Consensus 156 ~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P~~~~~~Pl~~~V~k~~~d~~-----~G~i-~~gRV~sG 229 (607)
T PRK10218 156 EQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAPDVDLDGPFQMQISQLDYNSY-----VGVI-GIGRIKRG 229 (607)
T ss_pred cccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCCCCCCCCCeEEEEEeeEecCC-----CcEE-EEEEEEeC
Confidence 123477777422 356788888887787765444444678887776532 3554 77877777
Q ss_pred CCCCCCeEEeCCC-Cc---eeeceee
Q 003796 282 CLSVNQLVHISGA-GD---FQLGKIE 303 (795)
Q Consensus 282 ~l~~n~lVHIpG~-GD---fqi~~I~ 303 (795)
.|++|+.|.++.- |. ..|.+|.
T Consensus 230 ~lk~Gd~v~~~~~~~~~~~~rv~~l~ 255 (607)
T PRK10218 230 KVKPNQQVTIIDSEGKTRNAKVGKVL 255 (607)
T ss_pred cCcCCCEEEEecCCCcEeeEEEEEEE
Confidence 7999999999876 43 3344554
No 40
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=97.28 E-value=0.02 Score=69.13 Aligned_cols=171 Identities=12% Similarity=0.069 Sum_probs=106.5
Q ss_pred eeeEEEEeCCC-CC-hHHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc-ch-h
Q 003796 122 RLRTSVLQAPH-GD-LVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT-DL-K 197 (795)
Q Consensus 122 k~Ritfie~~~-~d-l~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~-~~-K 197 (795)
+++++|+-+|- .+ +..|+-.+..||++|||+|+..| +...+.+.+.++...|.+.++.|++.+|. +. +
T Consensus 103 ~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g--------~~~~t~e~~~~~~~~~~~~iivvvNK~D~~~~~~ 174 (632)
T PRK05506 103 KRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKG--------VLTQTRRHSFIASLLGIRHVVLAVNKMDLVDYDQ 174 (632)
T ss_pred CceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCC--------ccccCHHHHHHHHHhCCCeEEEEEEecccccchh
Confidence 56889999872 23 34688889999999999999865 55667888888999999999999999885 11 1
Q ss_pred h-hHHHHHHHHhhcccccCCCCeeEEeCCH-----HH---------HHHHHHHHhhccccCcccccCCCe-EEEEeeEec
Q 003796 198 K-RKDLKKMCISSLTSEFPEDCKFYAADTK-----DE---------LHKFLWLFKEQRLTVPHWRNQRPF-LMAQKVDVV 261 (795)
Q Consensus 198 k-~~~~kK~lk~~f~~ef~~~~Klf~l~~~-----~E---------~~nL~R~Is~~k~r~l~WR~~rpY-mLadr~e~~ 261 (795)
. ...+++.++.++...-.....++++|.. .+ ...|+-.|....+ +-.+ ...|+ |-++++.-.
T Consensus 175 ~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~~~~~~~wy~g~tL~~~l~~~~~-~~~~-~~~p~r~~i~~v~~~ 252 (632)
T PRK05506 175 EVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVTRSARMPWYEGPSLLEHLETVEI-ASDR-NLKDFRFPVQYVNRP 252 (632)
T ss_pred HHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccccccCCCcccHhHHHHHHhcCCC-CCCc-CCCCceeeEEEEEec
Confidence 1 1224444443332211134668888721 11 1234445554433 2222 34444 445554311
Q ss_pred cCCCCCCCceEEEEEEEeCCCCCCCCeEEeCCCC-ceeeceeeccCCC
Q 003796 262 ADDCNSGKCTLLLHGYLRAHCLSVNQLVHISGAG-DFQLGKIEILKDP 308 (795)
Q Consensus 262 ~~~~~~~~~~l~v~GyvRG~~l~~n~lVHIpG~G-Dfqi~~I~~~~dP 308 (795)
. ....-+.|.|....+++|..|.|...| -..|.+|+.-..|
T Consensus 253 ~------~~~~g~~G~v~~G~l~~gd~v~i~P~~~~~~VksI~~~~~~ 294 (632)
T PRK05506 253 N------LDFRGFAGTVASGVVRPGDEVVVLPSGKTSRVKRIVTPDGD 294 (632)
T ss_pred C------CCceEEEEEEecceeecCCEEEEcCCCceEEEEEEEECCce
Confidence 0 011226799998889999999886555 5667777755444
No 41
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=97.21 E-value=0.033 Score=66.41 Aligned_cols=215 Identities=10% Similarity=0.175 Sum_probs=122.7
Q ss_pred CCEEEEEecCCCccChhhHHHHHHHhhccCCCCC---c-------ceEEEecCc-----------e-----eeEEEEeCC
Q 003796 78 PPRVIVLFGLSASVNLNSVREDLLRQLSSEGTGA---L-------SSTVSSSKY-----------R-----LRTSVLQAP 131 (795)
Q Consensus 78 pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~~---g-------~~tv~~~r~-----------k-----~Ritfie~~ 131 (795)
|| +|+|+|-++.+.+ +| +..|+...... | ...+..... + ..++|+-+|
T Consensus 4 ~p-iV~IiG~~d~GKT-SL----ln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTp 77 (590)
T TIGR00491 4 SP-IVSVLGHVDHGKT-TL----LDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTP 77 (590)
T ss_pred CC-EEEEECCCCCCHH-HH----HHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECC
Confidence 45 6999999998886 67 55554333211 2 222211100 0 138899887
Q ss_pred C-CChHHH-HHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc--chh----------
Q 003796 132 H-GDLVGC-MEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT--DLK---------- 197 (795)
Q Consensus 132 ~-~dl~~~-LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~--~~K---------- 197 (795)
- .++..| .-.+..||++|||+|++.| +...+++.++.++..|+| ++.|++.+|. .++
T Consensus 78 G~e~f~~l~~~~~~~aD~~IlVvD~~~g--------~~~qt~e~i~~l~~~~vp-iIVv~NK~Dl~~~~~~~~~~~f~e~ 148 (590)
T TIGR00491 78 GHEAFTNLRKRGGALADLAILIVDINEG--------FKPQTQEALNILRMYKTP-FVVAANKIDRIPGWRSHEGRPFMES 148 (590)
T ss_pred CcHhHHHHHHHHHhhCCEEEEEEECCcC--------CCHhHHHHHHHHHHcCCC-EEEEEECCCccchhhhccCchHHHH
Confidence 3 234443 3356899999999999954 677899999999999998 5667777774 111
Q ss_pred ---hhHHHHHHHHhh------------ccc-------ccCCCCeeEEeCCHH--HHHHHHHHHhhccc----cCccccc-
Q 003796 198 ---KRKDLKKMCISS------------LTS-------EFPEDCKFYAADTKD--ELHKFLWLFKEQRL----TVPHWRN- 248 (795)
Q Consensus 198 ---k~~~~kK~lk~~------------f~~-------ef~~~~Klf~l~~~~--E~~nL~R~Is~~k~----r~l~WR~- 248 (795)
....++..+..+ |.. ++.....++++|..+ -+..|+-.|..... ..+....
T Consensus 149 sak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~~~~l~~~l~~~~~ 228 (590)
T TIGR00491 149 FSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLAQQYLEEQLKLEEE 228 (590)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHHHHHhhhhhccCCC
Confidence 111222222111 111 244457888888422 23344444432111 2232221
Q ss_pred CCCeEEEEeeEeccCCCCCCCceEEEEEEEeCCCCCCCCeEEeCCCCceeeceeeccCCCCCCCc
Q 003796 249 QRPFLMAQKVDVVADDCNSGKCTLLLHGYLRAHCLSVNQLVHISGAGDFQLGKIEILKDPFPLNA 313 (795)
Q Consensus 249 ~rpYmLadr~e~~~~~~~~~~~~l~v~GyvRG~~l~~n~lVHIpG~GDfqi~~I~~~~dP~p~~~ 313 (795)
...-+.+.++-... ....+++|-|....|++|..|=+-+.+-=...+|..+-+|-|+..
T Consensus 229 ~~~~~~V~e~~~~~------G~G~v~t~~v~~G~l~~GD~iv~~~~~~~i~~kVr~l~~~~~l~e 287 (590)
T TIGR00491 229 GPARGTILEVKEET------GLGMTIDAVIYDGILRKGDTIAMAGSDDVIVTRVRALLKPRPLEE 287 (590)
T ss_pred CCeEEEEEEEEEcC------CCceEEEEEEEcCEEeCCCEEEEccCCCcccEEEEEecCCCcccc
Confidence 22234444443322 124677999987779988877766554334567777878877654
No 42
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=97.18 E-value=0.038 Score=66.12 Aligned_cols=207 Identities=8% Similarity=0.009 Sum_probs=127.6
Q ss_pred EEEEEecCCCccChhhHHHHHHHhh---ccC-----CCC------CcceEEE-------e---cCceeeEEEEeCCC-CC
Q 003796 80 RVIVLFGLSASVNLNSVREDLLRQL---SSE-----GTG------ALSSTVS-------S---SKYRLRTSVLQAPH-GD 134 (795)
Q Consensus 80 ~iV~Vvg~~~~~~~~sl~~~lvk~~---~~~-----~~~------~g~~tv~-------~---~r~k~Ritfie~~~-~d 134 (795)
+-|+|+|..+.+.+ +|++.|+... +.. ... +.-+|+. . +.....++|+.+|- .|
T Consensus 4 RNi~IIGh~d~GKT-TL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d 82 (595)
T TIGR01393 4 RNFSIIAHIDHGKS-TLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 82 (595)
T ss_pred eEEEEECCCCCCHH-HHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence 56899999887775 6655545431 110 000 0112222 1 12236789998873 33
Q ss_pred h-HHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchhhhHHHHHHHHhhcccc
Q 003796 135 L-VGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKKRKDLKKMCISSLTSE 213 (795)
Q Consensus 135 l-~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~~~Kk~~~~kK~lk~~f~~e 213 (795)
+ ..+....+.||.+|||+|++.| ....+.+.+..+...|+| ++.|++.+|........+.+.++..+..
T Consensus 83 F~~~v~~~l~~aD~aILVvDat~g--------~~~qt~~~~~~~~~~~ip-iIiViNKiDl~~~~~~~~~~el~~~lg~- 152 (595)
T TIGR01393 83 FSYEVSRSLAACEGALLLVDAAQG--------IEAQTLANVYLALENDLE-IIPVINKIDLPSADPERVKKEIEEVIGL- 152 (595)
T ss_pred HHHHHHHHHHhCCEEEEEecCCCC--------CCHhHHHHHHHHHHcCCC-EEEEEECcCCCccCHHHHHHHHHHHhCC-
Confidence 3 3456678899999999999965 555666666666678998 7778898885112222344455544431
Q ss_pred cCCCCeeEEeCC--HHHHHHHHHHHhhccccCcccccCCCeEEEEeeEeccCCCCCCCceEEEEEEEeCCCCCCCCeEEe
Q 003796 214 FPEDCKFYAADT--KDELHKFLWLFKEQRLTVPHWRNQRPFLMAQKVDVVADDCNSGKCTLLLHGYLRAHCLSVNQLVHI 291 (795)
Q Consensus 214 f~~~~Klf~l~~--~~E~~nL~R~Is~~k~r~l~WR~~rpYmLadr~e~~~~~~~~~~~~l~v~GyvRG~~l~~n~lVHI 291 (795)
. ...+|..|. ..-+..|+..|...-|.|...-+...-+++....+.+ .....++|-|....|++|..|.+
T Consensus 153 -~-~~~vi~vSAktG~GI~~Lle~I~~~lp~p~~~~~~pl~~~V~~~~~d~------~~G~v~~~rV~sG~lk~Gd~v~~ 224 (595)
T TIGR01393 153 -D-ASEAILASAKTGIGIEEILEAIVKRVPPPKGDPDAPLKALIFDSHYDN------YRGVVALVRVFEGTIKPGDKIRF 224 (595)
T ss_pred -C-cceEEEeeccCCCCHHHHHHHHHHhCCCCCCCCCCCeEEEEEEEEEeC------CCcEEEEEEEECCEEecCCEEEE
Confidence 1 234777774 3346667777777667776543333334555554433 23456888888888999999988
Q ss_pred CCCC-ceeeceeecc
Q 003796 292 SGAG-DFQLGKIEIL 305 (795)
Q Consensus 292 pG~G-Dfqi~~I~~~ 305 (795)
..-| -+.+.+|...
T Consensus 225 ~~~~~~~~v~~i~~~ 239 (595)
T TIGR01393 225 MSTGKEYEVDEVGVF 239 (595)
T ss_pred ecCCCeeEEeEEEEe
Confidence 7766 5788888743
No 43
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=97.09 E-value=0.0095 Score=61.43 Aligned_cols=64 Identities=16% Similarity=0.219 Sum_probs=52.9
Q ss_pred eeeEEEEeCCCC--Ch-HHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc
Q 003796 122 RLRTSVLQAPHG--DL-VGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT 194 (795)
Q Consensus 122 k~Ritfie~~~~--dl-~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~ 194 (795)
.+++.|+.+| . ++ ..++.+++.||.+|||+|++.| +...+.+.+..++..|.|.+|.|++.+|.
T Consensus 76 ~~~~~liDTp-G~~~~~~~~~~~~~~ad~~llVvD~~~~--------~~~~~~~~~~~~~~~~~~~iIvviNK~D~ 142 (208)
T cd04166 76 KRKFIIADTP-GHEQYTRNMVTGASTADLAILLVDARKG--------VLEQTRRHSYILSLLGIRHVVVAVNKMDL 142 (208)
T ss_pred CceEEEEECC-cHHHHHHHHHHhhhhCCEEEEEEECCCC--------ccHhHHHHHHHHHHcCCCcEEEEEEchhc
Confidence 4688999887 4 33 4688889999999999999964 55667778888888899999999999985
No 44
>PRK05433 GTP-binding protein LepA; Provisional
Probab=97.03 E-value=0.054 Score=64.93 Aligned_cols=166 Identities=7% Similarity=0.001 Sum_probs=109.7
Q ss_pred eeeEEEEeCCC-CCh-HHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchhhh
Q 003796 122 RLRTSVLQAPH-GDL-VGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKKR 199 (795)
Q Consensus 122 k~Ritfie~~~-~dl-~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~~~Kk~ 199 (795)
...++|+.+|- .|+ ..+..+...||.+|||+|++.| .+..+.+.+..+...|+| ++.|++.+|......
T Consensus 73 ~~~lnLiDTPGh~dF~~~v~~sl~~aD~aILVVDas~g--------v~~qt~~~~~~~~~~~lp-iIvViNKiDl~~a~~ 143 (600)
T PRK05433 73 TYILNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQG--------VEAQTLANVYLALENDLE-IIPVLNKIDLPAADP 143 (600)
T ss_pred cEEEEEEECCCcHHHHHHHHHHHHHCCEEEEEEECCCC--------CCHHHHHHHHHHHHCCCC-EEEEEECCCCCcccH
Confidence 46788998872 233 3456678899999999999965 566777777777888999 778899988511112
Q ss_pred HHHHHHHHhhcccccCCCCeeEEeCC--HHHHHHHHHHHhhccccCcccccCCCeEEEEeeEeccCCCCCCCceEEEEEE
Q 003796 200 KDLKKMCISSLTSEFPEDCKFYAADT--KDELHKFLWLFKEQRLTVPHWRNQRPFLMAQKVDVVADDCNSGKCTLLLHGY 277 (795)
Q Consensus 200 ~~~kK~lk~~f~~ef~~~~Klf~l~~--~~E~~nL~R~Is~~k~r~l~WR~~rpYmLadr~e~~~~~~~~~~~~l~v~Gy 277 (795)
..+.+.++..+.. + ...+++.|. ..-+..|+..|...-|.|...-+...-+++-...+.+ .....++|-
T Consensus 144 ~~v~~ei~~~lg~--~-~~~vi~iSAktG~GI~~Ll~~I~~~lp~P~~~~~~pl~~~Vfd~~~d~------~~G~v~~~r 214 (600)
T PRK05433 144 ERVKQEIEDVIGI--D-ASDAVLVSAKTGIGIEEVLEAIVERIPPPKGDPDAPLKALIFDSWYDN------YRGVVVLVR 214 (600)
T ss_pred HHHHHHHHHHhCC--C-cceEEEEecCCCCCHHHHHHHHHHhCccccCCCCCCceEEEEEEEecC------CCceEEEEE
Confidence 2334444444321 1 234788884 3346667777776667665444444444555544433 234567899
Q ss_pred EeCCCCCCCCeEEeCCCC-ceeeceeecc
Q 003796 278 LRAHCLSVNQLVHISGAG-DFQLGKIEIL 305 (795)
Q Consensus 278 vRG~~l~~n~lVHIpG~G-Dfqi~~I~~~ 305 (795)
|-...|++|..|.+..-| .+.+.+|...
T Consensus 215 V~sG~Lk~Gd~i~~~~~~~~~~V~~i~~~ 243 (600)
T PRK05433 215 VVDGTLKKGDKIKMMSTGKEYEVDEVGVF 243 (600)
T ss_pred EEcCEEecCCEEEEecCCceEEEEEeecc
Confidence 888889999999876655 6888888743
No 45
>PRK04004 translation initiation factor IF-2; Validated
Probab=97.01 E-value=0.067 Score=63.93 Aligned_cols=212 Identities=12% Similarity=0.111 Sum_probs=118.9
Q ss_pred EEEEEecCCCccChhhHHHHHHHhhccCCCC---CcceEEE-------ec------Cc----------eeeEEEEeCCC-
Q 003796 80 RVIVLFGLSASVNLNSVREDLLRQLSSEGTG---ALSSTVS-------SS------KY----------RLRTSVLQAPH- 132 (795)
Q Consensus 80 ~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~---~g~~tv~-------~~------r~----------k~Ritfie~~~- 132 (795)
-+|+|+|..+.+.+ +| +..|++.... .|-+|-. .. .. ...++|+.+|-
T Consensus 7 p~V~i~Gh~~~GKT-SL----l~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~ 81 (586)
T PRK04004 7 PIVVVLGHVDHGKT-TL----LDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGH 81 (586)
T ss_pred cEEEEECCCCCCHH-HH----HHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCCh
Confidence 36999999998886 67 5555443322 1222211 00 00 01378998873
Q ss_pred CChHHHHH-HHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc--chhh-----------
Q 003796 133 GDLVGCME-MAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT--DLKK----------- 198 (795)
Q Consensus 133 ~dl~~~LD-~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~--~~Kk----------- 198 (795)
.++..+.. .+..||++||++|++.| +...+++.++.++..|+| ++.|++.+|. .+..
T Consensus 82 e~f~~~~~~~~~~aD~~IlVvDa~~g--------~~~qt~e~i~~~~~~~vp-iIvviNK~D~~~~~~~~~~~~~~e~~~ 152 (586)
T PRK04004 82 EAFTNLRKRGGALADIAILVVDINEG--------FQPQTIEAINILKRRKTP-FVVAANKIDRIPGWKSTEDAPFLESIE 152 (586)
T ss_pred HHHHHHHHHhHhhCCEEEEEEECCCC--------CCHhHHHHHHHHHHcCCC-EEEEEECcCCchhhhhhcCchHHHHHh
Confidence 34444433 56889999999999965 778899999999999999 6677887774 1211
Q ss_pred --hHHHHH-------HHHhhc-----cc-------ccCCCCeeEEeCC-----HHHHHHHHHHHhhc-cccCccccc-CC
Q 003796 199 --RKDLKK-------MCISSL-----TS-------EFPEDCKFYAADT-----KDELHKFLWLFKEQ-RLTVPHWRN-QR 250 (795)
Q Consensus 199 --~~~~kK-------~lk~~f-----~~-------ef~~~~Klf~l~~-----~~E~~nL~R~Is~~-k~r~l~WR~-~r 250 (795)
...++. .+..++ +. ++.....++.+|. -.|++..+-.++.. -+.++.... ..
T Consensus 153 ~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~~~~l~~~l~~~~~~~ 232 (586)
T PRK04004 153 KQSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLAQRYLEERLKIDVEGP 232 (586)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHHHHHHHHhhccCCCCC
Confidence 011111 111222 22 2344566788873 33433332222221 122343322 22
Q ss_pred CeEEEEeeEeccCCCCCCCceEEEEEEEeCCCCCCCCeEEeCCCCceeeceeeccCCCCCC
Q 003796 251 PFLMAQKVDVVADDCNSGKCTLLLHGYLRAHCLSVNQLVHISGAGDFQLGKIEILKDPFPL 311 (795)
Q Consensus 251 pYmLadr~e~~~~~~~~~~~~l~v~GyvRG~~l~~n~lVHIpG~GDfqi~~I~~~~dP~p~ 311 (795)
..+.+.++...+. .| .+++|-|....|++|..|.+-+.+--...+|..+-+|-|+
T Consensus 233 ~~~~V~ev~~~~g-----~G-~v~~~~v~~GtL~~Gd~vv~~~~~~~i~~kVr~l~~~~~~ 287 (586)
T PRK04004 233 GKGTVLEVKEERG-----LG-TTIDVILYDGTLRKGDTIVVGGKDGPIVTKVRALLKPRPL 287 (586)
T ss_pred eEEEEEEEEEeCC-----Cc-eEEEEEEEcCEEECCCEEEECcCCCcceEEEEEEecCcch
Confidence 3444555443321 23 5689999888899999987765532112355555555444
No 46
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=96.97 E-value=0.026 Score=54.64 Aligned_cols=133 Identities=14% Similarity=0.117 Sum_probs=78.1
Q ss_pred CEEEEEecCCCccChhhHHHHHHHhhcc--CCCCC-----cceEEEecCceeeEEEEeCCCC--------Ch-----HHH
Q 003796 79 PRVIVLFGLSASVNLNSVREDLLRQLSS--EGTGA-----LSSTVSSSKYRLRTSVLQAPHG--------DL-----VGC 138 (795)
Q Consensus 79 P~iV~Vvg~~~~~~~~sl~~~lvk~~~~--~~~~~-----g~~tv~~~r~k~Ritfie~~~~--------dl-----~~~ 138 (795)
|.-|+++|.++.+.. +|++.|++.... .+... ....+... ..+++++.+|.- .+ ..+
T Consensus 2 ~~~i~i~G~~~~GKs-tli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~ 78 (174)
T cd01895 2 PIRIAIIGRPNVGKS-SLVNALLGEERVIVSDIAGTTRDSIDVPFEYD--GKKYTLIDTAGIRRKGKVEEGIEKYSVLRT 78 (174)
T ss_pred CcEEEEEcCCCCCHH-HHHHHHhCccceeccCCCCCccCceeeEEEEC--CeeEEEEECCCCccccchhccHHHHHHHHH
Confidence 667999999998875 674444432100 00000 11223333 357899999731 11 234
Q ss_pred HHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchh---hhHHHHHHHHhhcccccC
Q 003796 139 MEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLK---KRKDLKKMCISSLTSEFP 215 (795)
Q Consensus 139 LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~~~K---k~~~~kK~lk~~f~~ef~ 215 (795)
+.+..-||++|+++|++.+ ...+...++..+..+|.| ++.|+++.|.... ......+.+++.+...
T Consensus 79 ~~~~~~~d~vi~v~d~~~~--------~~~~~~~~~~~~~~~~~~-~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~-- 147 (174)
T cd01895 79 LKAIERADVVLLVIDATEG--------ITEQDLRIAGLILEEGKA-LVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFL-- 147 (174)
T ss_pred HHHHhhcCeEEEEEeCCCC--------cchhHHHHHHHHHhcCCC-EEEEEeccccCCccHHHHHHHHHHHHhhcccc--
Confidence 4566789999999999854 334455777777778865 5567888885111 1233455555554321
Q ss_pred CCCeeEEeCC
Q 003796 216 EDCKFYAADT 225 (795)
Q Consensus 216 ~~~Klf~l~~ 225 (795)
...++|.+|.
T Consensus 148 ~~~~~~~~Sa 157 (174)
T cd01895 148 DYAPIVFISA 157 (174)
T ss_pred cCCceEEEec
Confidence 2578888884
No 47
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=96.92 E-value=0.015 Score=62.71 Aligned_cols=81 Identities=11% Similarity=0.120 Sum_probs=61.1
Q ss_pred eeeEEEEeCCCCC---hHHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchhh
Q 003796 122 RLRTSVLQAPHGD---LVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKK 198 (795)
Q Consensus 122 k~Ritfie~~~~d---l~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~~~Kk 198 (795)
+.++.|+.+| .- ...+.-+...||.+|||+||+.| ....+.++++.++.+|.|.+ .+++.+|.....
T Consensus 63 ~~~i~liDTP-G~~df~~~~~~~l~~aD~ailVVDa~~g--------~~~~t~~~~~~~~~~~~p~i-vviNK~D~~~a~ 132 (270)
T cd01886 63 DHRINIIDTP-GHVDFTIEVERSLRVLDGAVAVFDAVAG--------VEPQTETVWRQADRYNVPRI-AFVNKMDRTGAD 132 (270)
T ss_pred CEEEEEEECC-CcHHHHHHHHHHHHHcCEEEEEEECCCC--------CCHHHHHHHHHHHHcCCCEE-EEEECCCCCCCC
Confidence 4689999998 53 35677789999999999999965 67788999999999999975 589988852122
Q ss_pred hHHHHHHHHhhccc
Q 003796 199 RKDLKKMCISSLTS 212 (795)
Q Consensus 199 ~~~~kK~lk~~f~~ 212 (795)
...+...++.++..
T Consensus 133 ~~~~~~~l~~~l~~ 146 (270)
T cd01886 133 FFRVVEQIREKLGA 146 (270)
T ss_pred HHHHHHHHHHHhCC
Confidence 33455666665543
No 48
>PRK00089 era GTPase Era; Reviewed
Probab=96.90 E-value=0.022 Score=61.76 Aligned_cols=142 Identities=14% Similarity=0.168 Sum_probs=84.5
Q ss_pred EEEEecCCCccChhhHHHHHHHhhccCCCCC----------cceEEEecCceeeEEEEeCCCCC-----------hHHHH
Q 003796 81 VIVLFGLSASVNLNSVREDLLRQLSSEGTGA----------LSSTVSSSKYRLRTSVLQAPHGD-----------LVGCM 139 (795)
Q Consensus 81 iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~~----------g~~tv~~~r~k~Ritfie~~~~d-----------l~~~L 139 (795)
+|+|+|+++++.+ +| +..+.+..... ....+... -...+.|+.+| .- ...+.
T Consensus 7 ~V~iiG~pn~GKS-TL----in~L~g~~~~~vs~~~~tt~~~i~~i~~~-~~~qi~~iDTP-G~~~~~~~l~~~~~~~~~ 79 (292)
T PRK00089 7 FVAIVGRPNVGKS-TL----LNALVGQKISIVSPKPQTTRHRIRGIVTE-DDAQIIFVDTP-GIHKPKRALNRAMNKAAW 79 (292)
T ss_pred EEEEECCCCCCHH-HH----HHHHhCCceeecCCCCCcccccEEEEEEc-CCceEEEEECC-CCCCchhHHHHHHHHHHH
Confidence 6999999998886 77 44444332210 11112221 13578999987 31 12344
Q ss_pred HHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchhhhHHHHHHHHhhcccccCCCCe
Q 003796 140 EMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKKRKDLKKMCISSLTSEFPEDCK 219 (795)
Q Consensus 140 D~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~~~Kk~~~~kK~lk~~f~~ef~~~~K 219 (795)
.+..-||++|+++|++.+ +.....+++..|+..+.| ++.|++..|.. +........++ .+...++ ...
T Consensus 80 ~~~~~~D~il~vvd~~~~--------~~~~~~~i~~~l~~~~~p-vilVlNKiDl~-~~~~~l~~~~~-~l~~~~~-~~~ 147 (292)
T PRK00089 80 SSLKDVDLVLFVVDADEK--------IGPGDEFILEKLKKVKTP-VILVLNKIDLV-KDKEELLPLLE-ELSELMD-FAE 147 (292)
T ss_pred HHHhcCCEEEEEEeCCCC--------CChhHHHHHHHHhhcCCC-EEEEEECCcCC-CCHHHHHHHHH-HHHhhCC-CCe
Confidence 567789999999999843 556667888888877777 55678988861 12122222222 1222222 567
Q ss_pred eEEeCC--HHHHHHHHHHHhhccc
Q 003796 220 FYAADT--KDELHKFLWLFKEQRL 241 (795)
Q Consensus 220 lf~l~~--~~E~~nL~R~Is~~k~ 241 (795)
+|.+|. ...+..|...|...-+
T Consensus 148 i~~iSA~~~~gv~~L~~~L~~~l~ 171 (292)
T PRK00089 148 IVPISALKGDNVDELLDVIAKYLP 171 (292)
T ss_pred EEEecCCCCCCHHHHHHHHHHhCC
Confidence 888884 3345666666665544
No 49
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=96.89 E-value=0.015 Score=62.37 Aligned_cols=78 Identities=14% Similarity=0.154 Sum_probs=57.9
Q ss_pred eeEEEEeCCCCCh---HHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchhhh
Q 003796 123 LRTSVLQAPHGDL---VGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKKR 199 (795)
Q Consensus 123 ~Ritfie~~~~dl---~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~~~Kk~ 199 (795)
.+++++.|| ... ..+..++..||.+|+++|++.| ....+..+++.+...|+|.++ |++.+|......
T Consensus 64 ~~i~liDtP-G~~~f~~~~~~~l~~aD~~i~Vvd~~~g--------~~~~~~~~~~~~~~~~~p~ii-vvNK~D~~~~~~ 133 (268)
T cd04170 64 HKINLIDTP-GYADFVGETRAALRAADAALVVVSAQSG--------VEVGTEKLWEFADEAGIPRII-FINKMDRERADF 133 (268)
T ss_pred EEEEEEECc-CHHHHHHHHHHHHHHCCEEEEEEeCCCC--------CCHHHHHHHHHHHHcCCCEEE-EEECCccCCCCH
Confidence 588999998 432 5588899999999999999965 566778889999999999776 889988621222
Q ss_pred HHHHHHHHhhc
Q 003796 200 KDLKKMCISSL 210 (795)
Q Consensus 200 ~~~kK~lk~~f 210 (795)
..+...++..|
T Consensus 134 ~~~~~~l~~~~ 144 (268)
T cd04170 134 DKTLAALQEAF 144 (268)
T ss_pred HHHHHHHHHHh
Confidence 33444555444
No 50
>PRK00093 GTP-binding protein Der; Reviewed
Probab=96.88 E-value=0.027 Score=64.53 Aligned_cols=132 Identities=14% Similarity=0.132 Sum_probs=85.7
Q ss_pred CCCEEEEEecCCCccChhhHHHHHHHhhccCCC---CC--cc----eEEEecCceeeEEEEeCCCCC-------------
Q 003796 77 SPPRVIVLFGLSASVNLNSVREDLLRQLSSEGT---GA--LS----STVSSSKYRLRTSVLQAPHGD------------- 134 (795)
Q Consensus 77 ~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~---~~--g~----~tv~~~r~k~Ritfie~~~~d------------- 134 (795)
..++-|+|+|.++.+.. +| +..+...+. .. |. +........+++.++.+| +-
T Consensus 171 ~~~~~v~ivG~~n~GKS-tl----in~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~-G~~~~~~~~~~~e~~ 244 (435)
T PRK00093 171 DEPIKIAIIGRPNVGKS-SL----INALLGEERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTA-GIRRKGKVTEGVEKY 244 (435)
T ss_pred ccceEEEEECCCCCCHH-HH----HHHHhCCCceeecCCCCceEEEEEEEEEECCeeEEEEECC-CCCCCcchhhHHHHH
Confidence 45778999999998886 77 444443321 11 11 111111224678999987 41
Q ss_pred -hHHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcc-hhhhHHHHHHHHhhccc
Q 003796 135 -LVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTD-LKKRKDLKKMCISSLTS 212 (795)
Q Consensus 135 -l~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~~-~Kk~~~~kK~lk~~f~~ 212 (795)
...++.+...||++|+|+|++.| +......++..+..+|.| ++.|++..|.. .......++.+...+..
T Consensus 245 ~~~~~~~~~~~ad~~ilViD~~~~--------~~~~~~~i~~~~~~~~~~-~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~ 315 (435)
T PRK00093 245 SVIRTLKAIERADVVLLVIDATEG--------ITEQDLRIAGLALEAGRA-LVIVVNKWDLVDEKTMEEFKKELRRRLPF 315 (435)
T ss_pred HHHHHHHHHHHCCEEEEEEeCCCC--------CCHHHHHHHHHHHHcCCc-EEEEEECccCCCHHHHHHHHHHHHHhccc
Confidence 23456788899999999999965 666778899999999987 55578877751 12234455556555532
Q ss_pred ccCCCCeeEEeCC
Q 003796 213 EFPEDCKFYAADT 225 (795)
Q Consensus 213 ef~~~~Klf~l~~ 225 (795)
+ ....++.+|.
T Consensus 316 -~-~~~~i~~~SA 326 (435)
T PRK00093 316 -L-DYAPIVFISA 326 (435)
T ss_pred -c-cCCCEEEEeC
Confidence 2 2578888884
No 51
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=96.84 E-value=0.029 Score=63.41 Aligned_cols=163 Identities=15% Similarity=0.183 Sum_probs=112.4
Q ss_pred eeEEEEeCCC--CChHHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc-chhhh
Q 003796 123 LRTSVLQAPH--GDLVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT-DLKKR 199 (795)
Q Consensus 123 ~Ritfie~~~--~dl~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~-~~Kk~ 199 (795)
.+++||.+|. .=|.+||+.+-..|..||+|++..| ....|-|.|-+|..-|+++.+.|||..|. +..+.
T Consensus 50 ~~~~fIDvpgh~~~i~~miag~~~~d~alLvV~~deG--------l~~qtgEhL~iLdllgi~~giivltk~D~~d~~r~ 121 (447)
T COG3276 50 GVMGFIDVPGHPDFISNLLAGLGGIDYALLVVAADEG--------LMAQTGEHLLILDLLGIKNGIIVLTKADRVDEARI 121 (447)
T ss_pred CceEEeeCCCcHHHHHHHHhhhcCCceEEEEEeCccC--------cchhhHHHHHHHHhcCCCceEEEEeccccccHHHH
Confidence 5899999974 5589999999999999999999854 88999999999999999999999999885 32333
Q ss_pred HHHHHHHHhhcccccCCCCeeEEeCC-----HHHHHHHHHHHhhccccCcccccCCCeEE-EEeeEeccCCCCCCCceEE
Q 003796 200 KDLKKMCISSLTSEFPEDCKFYAADT-----KDELHKFLWLFKEQRLTVPHWRNQRPFLM-AQKVDVVADDCNSGKCTLL 273 (795)
Q Consensus 200 ~~~kK~lk~~f~~ef~~~~Klf~l~~-----~~E~~nL~R~Is~~k~r~l~WR~~rpYmL-adr~e~~~~~~~~~~~~l~ 273 (795)
....+.+..... ...+++|..|- -.|+.|-+=.+.. ...=-.+.|+-+ +||+=-.. ..| .+
T Consensus 122 e~~i~~Il~~l~---l~~~~i~~~s~~~g~GI~~Lk~~l~~L~~----~~e~d~~~~fri~IDraFtVK-----GvG-TV 188 (447)
T COG3276 122 EQKIKQILADLS---LANAKIFKTSAKTGRGIEELKNELIDLLE----EIERDEQKPFRIAIDRAFTVK-----GVG-TV 188 (447)
T ss_pred HHHHHHHHhhcc---cccccccccccccCCCHHHHHHHHHHhhh----hhhhccCCceEEEEeeEEEec-----ccc-EE
Confidence 334444444444 33788888772 2222222222222 222223455555 56643222 123 56
Q ss_pred EEEEEeCCCCCCCCeEEeCCCC-ceeeceeeccC
Q 003796 274 LHGYLRAHCLSVNQLVHISGAG-DFQLGKIEILK 306 (795)
Q Consensus 274 v~GyvRG~~l~~n~lVHIpG~G-Dfqi~~I~~~~ 306 (795)
|+|++--....+|.-+-+-++| .-+|.+|....
T Consensus 189 VtGtv~sG~V~v~D~L~l~p~~k~v~VRsIq~~d 222 (447)
T COG3276 189 VTGTVLSGEVKVGDKLYLSPINKEVRVRSIQAHD 222 (447)
T ss_pred EEeEEeeeeEEECCEEEEecCCCeEEEEeeeecC
Confidence 7888765557788888888888 77888887654
No 52
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=96.76 E-value=0.021 Score=59.43 Aligned_cols=102 Identities=19% Similarity=0.216 Sum_probs=66.7
Q ss_pred eeeEEEEeCCCCC---hHHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcc---
Q 003796 122 RLRTSVLQAPHGD---LVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTD--- 195 (795)
Q Consensus 122 k~Ritfie~~~~d---l~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~~--- 195 (795)
..+++|+.+| .. +..++.+++.||.+|||+|++.+.. +..-+...++.+.+..++..|.|.++.|++.+|..
T Consensus 76 ~~~i~liDtp-G~~~~~~~~~~~~~~~d~~i~VvDa~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~iiivvNK~Dl~~~~ 153 (219)
T cd01883 76 KYRFTILDAP-GHRDFVPNMITGASQADVAVLVVDARKGEF-EAGFEKGGQTREHALLARTLGVKQLIVAVNKMDDVTVN 153 (219)
T ss_pred CeEEEEEECC-ChHHHHHHHHHHhhhCCEEEEEEECCCCcc-ccccccccchHHHHHHHHHcCCCeEEEEEEcccccccc
Confidence 5789999998 42 4567888899999999999996410 00001234667777778888999999999988851
Q ss_pred h-h-hhHHHHHHHHhhcccccC--CCCeeEEeCC
Q 003796 196 L-K-KRKDLKKMCISSLTSEFP--EDCKFYAADT 225 (795)
Q Consensus 196 ~-K-k~~~~kK~lk~~f~~ef~--~~~Klf~l~~ 225 (795)
+ . ....+.+.++.++...-. ....++++|.
T Consensus 154 ~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA 187 (219)
T cd01883 154 WSEERYDEIKKELSPFLKKVGYNPKDVPFIPISG 187 (219)
T ss_pred ccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeec
Confidence 0 1 123455555555543211 2466888773
No 53
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=96.72 E-value=0.022 Score=61.39 Aligned_cols=64 Identities=19% Similarity=0.271 Sum_probs=51.5
Q ss_pred eeeEEEEeCCC-CChHH-HHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc
Q 003796 122 RLRTSVLQAPH-GDLVG-CMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT 194 (795)
Q Consensus 122 k~Ritfie~~~-~dl~~-~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~ 194 (795)
+.++.|+.+|- .++.. +..+.+.||.+|+|+|++.| ++.++..+++.++..|+| ++.+++.+|.
T Consensus 70 ~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvda~~g--------~~~~~~~i~~~~~~~~~P-~iivvNK~D~ 135 (267)
T cd04169 70 DCVINLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKG--------VEPQTRKLFEVCRLRGIP-IITFINKLDR 135 (267)
T ss_pred CEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCC--------ccHHHHHHHHHHHhcCCC-EEEEEECCcc
Confidence 57899999873 23333 67788999999999999854 677788899999999999 6668898885
No 54
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=96.68 E-value=0.027 Score=59.57 Aligned_cols=81 Identities=14% Similarity=0.199 Sum_probs=60.2
Q ss_pred eeeEEEEeCCC-CC-hHHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchhhh
Q 003796 122 RLRTSVLQAPH-GD-LVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKKR 199 (795)
Q Consensus 122 k~Ritfie~~~-~d-l~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~~~Kk~ 199 (795)
+.+++|+.+|- .+ ...+..+.+.||.+|||+|++.| +..++.++++.++.+|+|.+ .|++.+|......
T Consensus 63 ~~~i~liDTPG~~~f~~~~~~~l~~aD~~IlVvd~~~g--------~~~~~~~~~~~~~~~~~P~i-ivvNK~D~~~a~~ 133 (237)
T cd04168 63 DTKVNLIDTPGHMDFIAEVERSLSVLDGAILVISAVEG--------VQAQTRILWRLLRKLNIPTI-IFVNKIDRAGADL 133 (237)
T ss_pred CEEEEEEeCCCccchHHHHHHHHHHhCeEEEEEeCCCC--------CCHHHHHHHHHHHHcCCCEE-EEEECccccCCCH
Confidence 57899999973 23 34577788999999999999965 66788999999999999975 5888888521122
Q ss_pred HHHHHHHHhhcc
Q 003796 200 KDLKKMCISSLT 211 (795)
Q Consensus 200 ~~~kK~lk~~f~ 211 (795)
.++...++.+|.
T Consensus 134 ~~~~~~i~~~~~ 145 (237)
T cd04168 134 EKVYQEIKEKLS 145 (237)
T ss_pred HHHHHHHHHHHC
Confidence 445666665553
No 55
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=96.54 E-value=0.043 Score=54.83 Aligned_cols=131 Identities=14% Similarity=0.131 Sum_probs=76.8
Q ss_pred CCCEEEEEecCCCccChhhHHHHHHHhhccCC-C-----CCcceEEEec--CceeeEEEEeCCCCC------------hH
Q 003796 77 SPPRVIVLFGLSASVNLNSVREDLLRQLSSEG-T-----GALSSTVSSS--KYRLRTSVLQAPHGD------------LV 136 (795)
Q Consensus 77 ~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~-~-----~~g~~tv~~~--r~k~Ritfie~~~~d------------l~ 136 (795)
..|. |+|+|.++.+.. +| +..++... . ..|. |.... .....+.|+..| .- +.
T Consensus 17 ~~~~-i~ivG~~~~GKS-tl----in~l~~~~~~~~~~~~~~~-t~~~~~~~~~~~~~liDtp-G~~~~~~~~~~~~~~~ 88 (179)
T TIGR03598 17 DGPE-IAFAGRSNVGKS-SL----INALTNRKKLARTSKTPGR-TQLINFFEVNDGFRLVDLP-GYGYAKVSKEEKEKWQ 88 (179)
T ss_pred CCCE-EEEEcCCCCCHH-HH----HHHHhCCCCcccccCCCCc-ceEEEEEEeCCcEEEEeCC-CCccccCChhHHHHHH
Confidence 4454 689999998886 77 55554432 1 1122 21111 012468888887 41 22
Q ss_pred HHH----HHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc-chhhhHHHHHHHHhhcc
Q 003796 137 GCM----EMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT-DLKKRKDLKKMCISSLT 211 (795)
Q Consensus 137 ~~L----D~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~-~~Kk~~~~kK~lk~~f~ 211 (795)
.++ ..+..+|.+|+++|++.+ +.....++++.|...|+| ++.|++++|. +..........++..+.
T Consensus 89 ~~~~~~l~~~~~~~~ii~vvd~~~~--------~~~~~~~~~~~~~~~~~p-viiv~nK~D~~~~~~~~~~~~~i~~~l~ 159 (179)
T TIGR03598 89 KLIEEYLEKRENLKGVVLLMDIRHP--------LKELDLEMLEWLRERGIP-VLIVLTKADKLKKSELNKQLKKIKKALK 159 (179)
T ss_pred HHHHHHHHhChhhcEEEEEecCCCC--------CCHHHHHHHHHHHHcCCC-EEEEEECcccCCHHHHHHHHHHHHHHHh
Confidence 222 223357899999999854 666667888999999998 7788899885 11212223333444444
Q ss_pred cccCCCCeeEEeCC
Q 003796 212 SEFPEDCKFYAADT 225 (795)
Q Consensus 212 ~ef~~~~Klf~l~~ 225 (795)
... ...++|..|.
T Consensus 160 ~~~-~~~~v~~~Sa 172 (179)
T TIGR03598 160 KDA-DDPSVQLFSS 172 (179)
T ss_pred hcc-CCCceEEEEC
Confidence 332 2357787764
No 56
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=96.52 E-value=0.061 Score=61.48 Aligned_cols=132 Identities=15% Similarity=0.152 Sum_probs=83.1
Q ss_pred CCCEEEEEecCCCccChhhHHHHHHHhhccCCC---CC--c----ceEEEecCceeeEEEEeCCCCC-------------
Q 003796 77 SPPRVIVLFGLSASVNLNSVREDLLRQLSSEGT---GA--L----SSTVSSSKYRLRTSVLQAPHGD------------- 134 (795)
Q Consensus 77 ~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~---~~--g----~~tv~~~r~k~Ritfie~~~~d------------- 134 (795)
..+.-|+|+|.++.+.. +| +..+...+. .. | ++........++++++..| .-
T Consensus 170 ~~~~~v~ivG~~~~GKS-sL----in~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~-G~~~~~~~~~~~e~~ 243 (429)
T TIGR03594 170 DGPIKIAIIGRPNVGKS-TL----VNALLGEERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTA-GIRRKGKVTEGVEKY 243 (429)
T ss_pred CCceEEEEECCCCCCHH-HH----HHHHHCCCeeecCCCCCceECcEeEEEEECCcEEEEEECC-CccccccchhhHHHH
Confidence 34567999999998875 67 444433221 11 1 1112211123588999887 41
Q ss_pred -hHHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc--chhhhHHHHHHHHhhcc
Q 003796 135 -LVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT--DLKKRKDLKKMCISSLT 211 (795)
Q Consensus 135 -l~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~--~~Kk~~~~kK~lk~~f~ 211 (795)
....+.+.+-||++|+|+|++.| +.....+++..+..+|.| ++.|++..|. +.......++.+...+.
T Consensus 244 ~~~~~~~~~~~ad~~ilV~D~~~~--------~~~~~~~~~~~~~~~~~~-iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~ 314 (429)
T TIGR03594 244 SVLRTLKAIERADVVLLVLDATEG--------ITEQDLRIAGLILEAGKA-LVIVVNKWDLVKDEKTREEFKKELRRKLP 314 (429)
T ss_pred HHHHHHHHHHhCCEEEEEEECCCC--------ccHHHHHHHHHHHHcCCc-EEEEEECcccCCCHHHHHHHHHHHHHhcc
Confidence 12345678899999999999965 666778899999999987 5557887775 11223345555655543
Q ss_pred cccCCCCeeEEeCC
Q 003796 212 SEFPEDCKFYAADT 225 (795)
Q Consensus 212 ~ef~~~~Klf~l~~ 225 (795)
.. .+..++.+|.
T Consensus 315 ~~--~~~~vi~~SA 326 (429)
T TIGR03594 315 FL--DFAPIVFISA 326 (429)
T ss_pred cC--CCCceEEEeC
Confidence 32 2578888884
No 57
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=96.46 E-value=0.11 Score=52.68 Aligned_cols=133 Identities=15% Similarity=0.150 Sum_probs=77.3
Q ss_pred EEEEEecCCCccChhhHHHHHHH---hhccCCC-------------CCc------ceEEEecCceeeEEEEeCCC-CChH
Q 003796 80 RVIVLFGLSASVNLNSVREDLLR---QLSSEGT-------------GAL------SSTVSSSKYRLRTSVLQAPH-GDLV 136 (795)
Q Consensus 80 ~iV~Vvg~~~~~~~~sl~~~lvk---~~~~~~~-------------~~g------~~tv~~~r~k~Ritfie~~~-~dl~ 136 (795)
+-|+|+|.++.+.. +|++.|+. .+..... ..| .+.+.. .+.+++|+.+|- .++.
T Consensus 3 r~i~ivG~~~~GKT-sL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~--~~~~~~l~DtpG~~~~~ 79 (194)
T cd01891 3 RNIAIIAHVDHGKT-TLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTY--KDTKINIVDTPGHADFG 79 (194)
T ss_pred cEEEEEecCCCCHH-HHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEE--CCEEEEEEECCCcHHHH
Confidence 56999999998875 67555453 1111110 001 122222 357899999983 2344
Q ss_pred H-HHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchhhhHHHHHHHHhhccc---
Q 003796 137 G-CMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKKRKDLKKMCISSLTS--- 212 (795)
Q Consensus 137 ~-~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~~~Kk~~~~kK~lk~~f~~--- 212 (795)
+ +.-.++-||.+|+|+|++.+ .......+|..+..+|+| ++.|++.+|........+...++.++..
T Consensus 80 ~~~~~~~~~~d~~ilV~d~~~~--------~~~~~~~~~~~~~~~~~p-~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~ 150 (194)
T cd01891 80 GEVERVLSMVDGVLLLVDASEG--------PMPQTRFVLKKALELGLK-PIVVINKIDRPDARPEEVVDEVFDLFIELGA 150 (194)
T ss_pred HHHHHHHHhcCEEEEEEECCCC--------ccHHHHHHHHHHHHcCCC-EEEEEECCCCCCCCHHHHHHHHHHHHHHhCC
Confidence 4 34557899999999999854 334456667777778999 5667998885112222233334433321
Q ss_pred ccC-CCCeeEEeC
Q 003796 213 EFP-EDCKFYAAD 224 (795)
Q Consensus 213 ef~-~~~Klf~l~ 224 (795)
... .+..++..|
T Consensus 151 ~~~~~~~~iv~~S 163 (194)
T cd01891 151 TEEQLDFPVLYAS 163 (194)
T ss_pred ccccCccCEEEee
Confidence 100 145777777
No 58
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=96.41 E-value=0.13 Score=50.71 Aligned_cols=108 Identities=17% Similarity=0.144 Sum_probs=67.2
Q ss_pred eeeEEEEeCCCC--Ch-HHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcch-h
Q 003796 122 RLRTSVLQAPHG--DL-VGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDL-K 197 (795)
Q Consensus 122 k~Ritfie~~~~--dl-~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~~~-K 197 (795)
+.+++|+.+| . ++ .....+.+.||.+|+++|++.+ ...+..+++..+...+.| ++.|++..|.-. -
T Consensus 61 ~~~~~liDtp-G~~~~~~~~~~~~~~~d~~i~v~d~~~~--------~~~~~~~~~~~~~~~~~~-i~iv~nK~D~~~~~ 130 (189)
T cd00881 61 DRRVNFIDTP-GHEDFSSEVIRGLSVSDGAILVVDANEG--------VQPQTREHLRIAREGGLP-IIVAINKIDRVGEE 130 (189)
T ss_pred CEEEEEEeCC-CcHHHHHHHHHHHHhcCEEEEEEECCCC--------CcHHHHHHHHHHHHCCCC-eEEEEECCCCcchh
Confidence 4689999997 4 23 3355667889999999999854 555667788888776766 666778777511 1
Q ss_pred hhHHHHHHHHhhcccc-----------cCCCCeeEEeCCH--HHHHHHHHHHhhc
Q 003796 198 KRKDLKKMCISSLTSE-----------FPEDCKFYAADTK--DELHKFLWLFKEQ 239 (795)
Q Consensus 198 k~~~~kK~lk~~f~~e-----------f~~~~Klf~l~~~--~E~~nL~R~Is~~ 239 (795)
......+.++..+... .+....+|.+|.. ..+..|...|+..
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~ 185 (189)
T cd00881 131 DLEEVLREIKELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEH 185 (189)
T ss_pred cHHHHHHHHHHHHccccccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhh
Confidence 1222333344333321 2336778888842 3456666666544
No 59
>PRK15494 era GTPase Era; Provisional
Probab=96.34 E-value=0.099 Score=58.29 Aligned_cols=140 Identities=16% Similarity=0.245 Sum_probs=83.3
Q ss_pred CEEEEEecCCCccChhhHHHHHHHhhccCCCC-----C----cceE--EEecCceeeEEEEeCCCCC------hH-HHH-
Q 003796 79 PRVIVLFGLSASVNLNSVREDLLRQLSSEGTG-----A----LSST--VSSSKYRLRTSVLQAPHGD------LV-GCM- 139 (795)
Q Consensus 79 P~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~-----~----g~~t--v~~~r~k~Ritfie~~~~d------l~-~~L- 139 (795)
..-|+|+|.++.+.+ +| +..|...... . +.++ +..+ ...+.|+.+| .- +. .|.
T Consensus 52 ~~kV~ivG~~nvGKS-TL----in~l~~~k~~ivs~k~~tTr~~~~~~~~~~--~~qi~~~DTp-G~~~~~~~l~~~~~r 123 (339)
T PRK15494 52 TVSVCIIGRPNSGKS-TL----LNRIIGEKLSIVTPKVQTTRSIITGIITLK--DTQVILYDTP-GIFEPKGSLEKAMVR 123 (339)
T ss_pred eeEEEEEcCCCCCHH-HH----HHHHhCCceeeccCCCCCccCcEEEEEEeC--CeEEEEEECC-CcCCCcccHHHHHHH
Confidence 346899999998876 67 3333322211 0 1121 1222 3578999987 43 22 232
Q ss_pred ---HHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchhhhHHHHHHHHhhcccccCC
Q 003796 140 ---EMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKKRKDLKKMCISSLTSEFPE 216 (795)
Q Consensus 140 ---D~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~~~Kk~~~~kK~lk~~f~~ef~~ 216 (795)
.++.-||+||||+|++.+ |+.....+++.++..+.|.++ |++.+|...+......+.++. .. .
T Consensus 124 ~~~~~l~~aDvil~VvD~~~s--------~~~~~~~il~~l~~~~~p~Il-ViNKiDl~~~~~~~~~~~l~~----~~-~ 189 (339)
T PRK15494 124 CAWSSLHSADLVLLIIDSLKS--------FDDITHNILDKLRSLNIVPIF-LLNKIDIESKYLNDIKAFLTE----NH-P 189 (339)
T ss_pred HHHHHhhhCCEEEEEEECCCC--------CCHHHHHHHHHHHhcCCCEEE-EEEhhcCccccHHHHHHHHHh----cC-C
Confidence 346789999999998843 766667788888888988764 789888511222233333332 22 2
Q ss_pred CCeeEEeCC--HHHHHHHHHHHhhcc
Q 003796 217 DCKFYAADT--KDELHKFLWLFKEQR 240 (795)
Q Consensus 217 ~~Klf~l~~--~~E~~nL~R~Is~~k 240 (795)
...+|.+|. ...+..|...|...-
T Consensus 190 ~~~i~~iSAktg~gv~eL~~~L~~~l 215 (339)
T PRK15494 190 DSLLFPISALSGKNIDGLLEYITSKA 215 (339)
T ss_pred CcEEEEEeccCccCHHHHHHHHHHhC
Confidence 467888874 334555555665443
No 60
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=96.31 E-value=0.058 Score=62.38 Aligned_cols=149 Identities=17% Similarity=0.213 Sum_probs=95.6
Q ss_pred CCEEEEEecCCCccChhhHHHHHHHhhccCCCCC----------cceEEEecC-ceeeEEEEeCCCCChHHHHH--HHhh
Q 003796 78 PPRVIVLFGLSASVNLNSVREDLLRQLSSEGTGA----------LSSTVSSSK-YRLRTSVLQAPHGDLVGCME--MAKV 144 (795)
Q Consensus 78 pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~~----------g~~tv~~~r-~k~Ritfie~~~~dl~~~LD--~aKv 144 (795)
-|-||+|+|==..+.. +| +..+.+.+... |-+++..+. .-..||||.-|.---.+.+- -|++
T Consensus 4 R~PvVtimGHVDHGKT-tL----LD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~v 78 (509)
T COG0532 4 RPPVVTIMGHVDHGKT-TL----LDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASV 78 (509)
T ss_pred CCCEEEEeCcccCCcc-ch----hhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCcc
Confidence 3557999997555544 55 66665554332 444455431 13689999887422333333 3799
Q ss_pred hceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchhhhHHHHHHHHh-hccccc-CCCCeeEE
Q 003796 145 ADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKKRKDLKKMCIS-SLTSEF-PEDCKFYA 222 (795)
Q Consensus 145 ADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~~~Kk~~~~kK~lk~-~f~~ef-~~~~Klf~ 222 (795)
+|+++|++++..| +-..|.|-++.+++.|.|-++.+ +.+|.-...--+++..|+. =|..|- .....+.+
T Consensus 79 tDIaILVVa~dDG--------v~pQTiEAI~hak~a~vP~iVAi-NKiDk~~~np~~v~~el~~~gl~~E~~gg~v~~Vp 149 (509)
T COG0532 79 TDIAILVVAADDG--------VMPQTIEAINHAKAAGVPIVVAI-NKIDKPEANPDKVKQELQEYGLVPEEWGGDVIFVP 149 (509)
T ss_pred ccEEEEEEEccCC--------cchhHHHHHHHHHHCCCCEEEEE-ecccCCCCCHHHHHHHHHHcCCCHhhcCCceEEEE
Confidence 9999999999965 88999999999999999988876 3333200111123333332 344443 33466677
Q ss_pred eC-----CHHHHHHHHHHHhhcc
Q 003796 223 AD-----TKDELHKFLWLFKEQR 240 (795)
Q Consensus 223 l~-----~~~E~~nL~R~Is~~k 240 (795)
.| +..|.+.+++.++.+.
T Consensus 150 vSA~tg~Gi~eLL~~ill~aev~ 172 (509)
T COG0532 150 VSAKTGEGIDELLELILLLAEVL 172 (509)
T ss_pred eeccCCCCHHHHHHHHHHHHHHH
Confidence 77 5788888888888766
No 61
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=96.30 E-value=0.081 Score=56.89 Aligned_cols=139 Identities=12% Similarity=0.117 Sum_probs=78.2
Q ss_pred EEEEecCCCccChhhHHHHHHHhhccCCCC---C------cce-EEEecCceeeEEEEeCCCC-----ChH-----HHHH
Q 003796 81 VIVLFGLSASVNLNSVREDLLRQLSSEGTG---A------LSS-TVSSSKYRLRTSVLQAPHG-----DLV-----GCME 140 (795)
Q Consensus 81 iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~---~------g~~-tv~~~r~k~Ritfie~~~~-----dl~-----~~LD 140 (795)
.|+|+|.++.+.+ +| +..+++.+.. . ..+ .+.... ...+.|+..|-- .+. .+..
T Consensus 2 ~V~liG~pnvGKS-TL----ln~L~~~~~~~vs~~~~TTr~~i~~i~~~~-~~qii~vDTPG~~~~~~~l~~~~~~~~~~ 75 (270)
T TIGR00436 2 FVAILGRPNVGKS-TL----LNQLHGQKISITSPKAQTTRNRISGIHTTG-ASQIIFIDTPGFHEKKHSLNRLMMKEARS 75 (270)
T ss_pred EEEEECCCCCCHH-HH----HHHHhCCcEeecCCCCCcccCcEEEEEEcC-CcEEEEEECcCCCCCcchHHHHHHHHHHH
Confidence 4899999998875 77 4444333211 1 111 122221 345899998721 122 2345
Q ss_pred HHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchhhhHHHHHHHHhhcccccCCCCee
Q 003796 141 MAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKKRKDLKKMCISSLTSEFPEDCKF 220 (795)
Q Consensus 141 ~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~~~Kk~~~~kK~lk~~f~~ef~~~~Kl 220 (795)
+++-||+||+|+|++.+ ...+ ..+++.|+..+.| ++.|++..|. .........+..+... ....++
T Consensus 76 ~l~~aDvvl~VvD~~~~--------~~~~-~~i~~~l~~~~~p-~ilV~NK~Dl--~~~~~~~~~~~~~~~~--~~~~~v 141 (270)
T TIGR00436 76 AIGGVDLILFVVDSDQW--------NGDG-EFVLTKLQNLKRP-VVLTRNKLDN--KFKDKLLPLIDKYAIL--EDFKDI 141 (270)
T ss_pred HHhhCCEEEEEEECCCC--------CchH-HHHHHHHHhcCCC-EEEEEECeeC--CCHHHHHHHHHHHHhh--cCCCce
Confidence 67889999999999853 1122 6678888888887 5678888886 1112222222222111 123478
Q ss_pred EEeCC--HHHHHHHHHHHhhc
Q 003796 221 YAADT--KDELHKFLWLFKEQ 239 (795)
Q Consensus 221 f~l~~--~~E~~nL~R~Is~~ 239 (795)
|.+|. ...+..|...|...
T Consensus 142 ~~iSA~~g~gi~~L~~~l~~~ 162 (270)
T TIGR00436 142 VPISALTGDNTSFLAAFIEVH 162 (270)
T ss_pred EEEecCCCCCHHHHHHHHHHh
Confidence 88883 23344555555443
No 62
>PRK14845 translation initiation factor IF-2; Provisional
Probab=96.19 E-value=0.27 Score=62.14 Aligned_cols=177 Identities=12% Similarity=0.137 Sum_probs=109.9
Q ss_pred eEEEEeCCC-CChHHH-HHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc--chh--
Q 003796 124 RTSVLQAPH-GDLVGC-MEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT--DLK-- 197 (795)
Q Consensus 124 Ritfie~~~-~dl~~~-LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~--~~K-- 197 (795)
.++|+.+|- .++.++ .-.+..||++|||+|++.| +...+++.+..++..|.| +|.|++.+|. +++
T Consensus 527 ~i~fiDTPGhe~F~~lr~~g~~~aDivlLVVDa~~G--------i~~qT~e~I~~lk~~~iP-iIVViNKiDL~~~~~~~ 597 (1049)
T PRK14845 527 GLLFIDTPGHEAFTSLRKRGGSLADLAVLVVDINEG--------FKPQTIEAINILRQYKTP-FVVAANKIDLIPGWNIS 597 (1049)
T ss_pred cEEEEECCCcHHHHHHHHhhcccCCEEEEEEECccc--------CCHhHHHHHHHHHHcCCC-EEEEEECCCCccccccc
Confidence 389999873 223332 2345779999999999954 888999999999999998 6667777663 222
Q ss_pred ----------hh-HHHHHHHHhhc------------c-------cccCCCCeeEEeCCHH--HHHHHHHHHhhccc----
Q 003796 198 ----------KR-KDLKKMCISSL------------T-------SEFPEDCKFYAADTKD--ELHKFLWLFKEQRL---- 241 (795)
Q Consensus 198 ----------k~-~~~kK~lk~~f------------~-------~ef~~~~Klf~l~~~~--E~~nL~R~Is~~k~---- 241 (795)
++ ..++..+..++ . .+|....-++++|..+ -+..|+-.|.....
T Consensus 598 ~~~~~~~~~~~q~~~~~~el~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~~~~l~ 677 (1049)
T PRK14845 598 EDEPFLLNFNEQDQHALTELEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLAQKYLE 677 (1049)
T ss_pred cchhhhhhhhhhHHHHHHHHHHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhhHHhhh
Confidence 11 12333222111 1 2345567788888422 23344444443322
Q ss_pred cCcccccCCC-eEEEEeeEeccCCCCCCCceEEEEEEEeCCCCCCCCeEEeCCCCceeeceeeccCCCCCCCccc
Q 003796 242 TVPHWRNQRP-FLMAQKVDVVADDCNSGKCTLLLHGYLRAHCLSVNQLVHISGAGDFQLGKIEILKDPFPLNARK 315 (795)
Q Consensus 242 r~l~WR~~rp-YmLadr~e~~~~~~~~~~~~l~v~GyvRG~~l~~n~lVHIpG~GDfqi~~I~~~~dP~p~~~~~ 315 (795)
..+......| -+.++++...+ ....+++|-|....|++|..|-+-+.+.=...+|..+-+|-|+..-+
T Consensus 678 ~~L~~~~~~~~~g~VlEv~~~k------G~G~vvt~iv~~G~Lk~GD~iv~g~~~~~i~~kVRaLl~p~pl~e~r 746 (1049)
T PRK14845 678 ERLKLNVEGYAKGTILEVKEEK------GLGTTIDAIIYDGTLRRGDTIVVGGPDDVIVTKVRALLKPKPLDEIR 746 (1049)
T ss_pred hhhccCCCCceEEEEEEEEEec------CceeEEEEEEEcCEEecCCEEEEccCCCcceEEEEEecCcccccccc
Confidence 2233322221 13333433222 23478899998888999999999887777788999999988876543
No 63
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=96.18 E-value=0.093 Score=51.06 Aligned_cols=134 Identities=13% Similarity=0.124 Sum_probs=74.0
Q ss_pred EEEecCCCccChhhHHHHHHHhhccCC---C-----CC--cceEEEecCceeeEEEEeCCC-CChHHH-HHHHhhhceEE
Q 003796 82 IVLFGLSASVNLNSVREDLLRQLSSEG---T-----GA--LSSTVSSSKYRLRTSVLQAPH-GDLVGC-MEMAKVADLVA 149 (795)
Q Consensus 82 V~Vvg~~~~~~~~sl~~~lvk~~~~~~---~-----~~--g~~tv~~~r~k~Ritfie~~~-~dl~~~-LD~aKvADlVl 149 (795)
|+|+|+++.++. +|+++|...+.... . +. ...++..+ +.++.++.+|- .++.++ ....+-||.+|
T Consensus 2 i~~vG~~~~GKs-tLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v 78 (167)
T cd04160 2 VLILGLDNAGKT-TFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVG--NARLKFWDLGGQESLRSLWDKYYAECHAII 78 (167)
T ss_pred EEEEecCCCCHH-HHHHHHhhhcccccCCcccccCCccccceEEEEEC--CEEEEEEECCCChhhHHHHHHHhCCCCEEE
Confidence 789999998886 77555444332100 0 00 12233333 46888898872 234443 34578899999
Q ss_pred EeeeCCCccccccccccChHHHHHHHHHH---hcCCCceEEEeccCCcchh-hhHHHHHHHHhhcccccCCCCeeEEeCC
Q 003796 150 FVASASSFSEESMSYYIDSFGNQCLSVFR---SLGLPSTAVLIRDLPTDLK-KRKDLKKMCISSLTSEFPEDCKFYAADT 225 (795)
Q Consensus 150 l~idas~g~~~~~~~~fe~eg~e~L~~l~---aqG~P~vigVl~~Ld~~~K-k~~~~kK~lk~~f~~ef~~~~Klf~l~~ 225 (795)
||+|++.. ..++.....+..+++ .+|+| ++.|++..|.... ......+.++......-..+.+++.+|.
T Consensus 79 ~vvd~~~~------~~~~~~~~~~~~~~~~~~~~~~p-~ilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 151 (167)
T cd04160 79 YVIDSTDR------ERFEESKSALEKVLRNEALEGVP-LLILANKQDLPDALSVEEIKEVFQDKAEEIGRRDCLVLPVSA 151 (167)
T ss_pred EEEECchH------HHHHHHHHHHHHHHhChhhcCCC-EEEEEEccccccCCCHHHHHHHhccccccccCCceEEEEeeC
Confidence 99999842 223333333333333 46788 6667888774111 1123444444443322223568888884
No 64
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=96.08 E-value=0.16 Score=50.10 Aligned_cols=106 Identities=8% Similarity=0.020 Sum_probs=61.9
Q ss_pred eeeEEEEeCCC-CChHHH-HHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchhhh
Q 003796 122 RLRTSVLQAPH-GDLVGC-MEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKKR 199 (795)
Q Consensus 122 k~Ritfie~~~-~dl~~~-LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~~~Kk~ 199 (795)
+..++|+.+|- .++..+ ...++-||.+|+|+|++.+ ...+.++.+..+...|+| ++.|++.+|......
T Consensus 66 ~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~--------~~~~~~~~~~~~~~~~~~-iiiv~NK~Dl~~~~~ 136 (179)
T cd01890 66 EYLLNLIDTPGHVDFSYEVSRSLAACEGALLLVDATQG--------VEAQTLANFYLALENNLE-IIPVINKIDLPSADP 136 (179)
T ss_pred cEEEEEEECCCChhhHHHHHHHHHhcCeEEEEEECCCC--------ccHhhHHHHHHHHHcCCC-EEEEEECCCCCcCCH
Confidence 45678888862 234333 4467889999999999854 333455555566678888 677889988511112
Q ss_pred HHHHHHHHhhcccccCCCCeeEEeCC--HHHHHHHHHHHhhc
Q 003796 200 KDLKKMCISSLTSEFPEDCKFYAADT--KDELHKFLWLFKEQ 239 (795)
Q Consensus 200 ~~~kK~lk~~f~~ef~~~~Klf~l~~--~~E~~nL~R~Is~~ 239 (795)
....+.+.+.+. ++ ...+|.+|. ...+..|...|...
T Consensus 137 ~~~~~~~~~~~~--~~-~~~~~~~Sa~~g~gi~~l~~~l~~~ 175 (179)
T cd01890 137 ERVKQQIEDVLG--LD-PSEAILVSAKTGLGVEDLLEAIVER 175 (179)
T ss_pred HHHHHHHHHHhC--CC-cccEEEeeccCCCCHHHHHHHHHhh
Confidence 223344444332 11 235777773 22344455555443
No 65
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=96.05 E-value=0.16 Score=50.94 Aligned_cols=125 Identities=14% Similarity=0.134 Sum_probs=71.0
Q ss_pred EEEEecCCCccChhhHHHHHHHhhccCC------CCCcceEE--EecCceeeEEEEeCCCCC------------h----H
Q 003796 81 VIVLFGLSASVNLNSVREDLLRQLSSEG------TGALSSTV--SSSKYRLRTSVLQAPHGD------------L----V 136 (795)
Q Consensus 81 iV~Vvg~~~~~~~~sl~~~lvk~~~~~~------~~~g~~tv--~~~r~k~Ritfie~~~~d------------l----~ 136 (795)
-|+|+|.++.+.. +| ++.+++.. ...| .|. ........+.|+..| +- . .
T Consensus 26 ~v~ivG~~~~GKS-sl----i~~l~~~~~~~~~~~~~~-~t~~~~~~~~~~~l~l~Dtp-G~~~~~~~~~~~~~~~~~~~ 98 (196)
T PRK00454 26 EIAFAGRSNVGKS-SL----INALTNRKNLARTSKTPG-RTQLINFFEVNDKLRLVDLP-GYGYAKVSKEEKEKWQKLIE 98 (196)
T ss_pred EEEEEcCCCCCHH-HH----HHHHhCCCCcccccCCCC-ceeEEEEEecCCeEEEeCCC-CCCCcCCCchHHHHHHHHHH
Confidence 3899999998886 77 44444322 1112 111 111123578888887 41 1 1
Q ss_pred HHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc-chhhhHHHHHHHHhhcccccC
Q 003796 137 GCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT-DLKKRKDLKKMCISSLTSEFP 215 (795)
Q Consensus 137 ~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~-~~Kk~~~~kK~lk~~f~~ef~ 215 (795)
..+..+..++++++++|++.+ +.....+++..+...|+| ++.|++..|. +...+......++..+...
T Consensus 99 ~~~~~~~~~~~~~~v~d~~~~--------~~~~~~~i~~~l~~~~~~-~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~-- 167 (196)
T PRK00454 99 EYLRTRENLKGVVLLIDSRHP--------LKELDLQMIEWLKEYGIP-VLIVLTKADKLKKGERKKQLKKVRKALKFG-- 167 (196)
T ss_pred HHHHhCccceEEEEEEecCCC--------CCHHHHHHHHHHHHcCCc-EEEEEECcccCCHHHHHHHHHHHHHHHHhc--
Confidence 223333445789999998753 444445677777778888 6667787775 1122233344455555443
Q ss_pred CCCeeEEeC
Q 003796 216 EDCKFYAAD 224 (795)
Q Consensus 216 ~~~Klf~l~ 224 (795)
..++|..|
T Consensus 168 -~~~~~~~S 175 (196)
T PRK00454 168 -DDEVILFS 175 (196)
T ss_pred -CCceEEEE
Confidence 35777776
No 66
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=95.92 E-value=0.13 Score=48.65 Aligned_cols=139 Identities=11% Similarity=0.118 Sum_probs=76.3
Q ss_pred EEEecCCCccChhhHHHHHHHhhccCCCC-----C-----cceEEEecCceeeEEEEeCCCC-ChHH-HHHHHhhhceEE
Q 003796 82 IVLFGLSASVNLNSVREDLLRQLSSEGTG-----A-----LSSTVSSSKYRLRTSVLQAPHG-DLVG-CMEMAKVADLVA 149 (795)
Q Consensus 82 V~Vvg~~~~~~~~sl~~~lvk~~~~~~~~-----~-----g~~tv~~~r~k~Ritfie~~~~-dl~~-~LD~aKvADlVl 149 (795)
|+++|+++++.. +| +..+...... . ...++........++++.+|.. ...+ ...+++-+|.+|
T Consensus 3 i~~~G~~~~GKS-tl----~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii 77 (159)
T cd00154 3 IVLIGDSGVGKT-SL----LLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAI 77 (159)
T ss_pred EEEECCCCCCHH-HH----HHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEE
Confidence 789999998886 77 4444332211 1 3344444444577888888731 2222 345567799999
Q ss_pred EeeeCCCccccccccccChHHHHHHHHHHhcC--CCceEEEeccCCcchhhhHHHHHHHHhhcccccCCCCeeEEeCCH-
Q 003796 150 FVASASSFSEESMSYYIDSFGNQCLSVFRSLG--LPSTAVLIRDLPTDLKKRKDLKKMCISSLTSEFPEDCKFYAADTK- 226 (795)
Q Consensus 150 l~idas~g~~~~~~~~fe~eg~e~L~~l~aqG--~P~vigVl~~Ld~~~Kk~~~~kK~lk~~f~~ef~~~~Klf~l~~~- 226 (795)
+++|++.. ..++.- ..+++.+..++ -+.++.|+++.|.. .......+.++..... .+..++.+|..
T Consensus 78 ~v~d~~~~------~~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~-~~~~~~~~~~~~~~~~---~~~~~~~~sa~~ 146 (159)
T cd00154 78 LVYDITNR------ESFENL-DKWLKELKEYAPENIPIILVGNKIDLE-DQRQVSTEEAQQFAKE---NGLLFFETSAKT 146 (159)
T ss_pred EEEECCCH------HHHHHH-HHHHHHHHHhCCCCCcEEEEEEccccc-ccccccHHHHHHHHHH---cCCeEEEEecCC
Confidence 99999842 234433 33666666655 34456778888761 0111122222222222 24567887742
Q ss_pred -HHHHHHHHHH
Q 003796 227 -DELHKFLWLF 236 (795)
Q Consensus 227 -~E~~nL~R~I 236 (795)
..+..+...|
T Consensus 147 ~~~i~~~~~~i 157 (159)
T cd00154 147 GENVEELFQSL 157 (159)
T ss_pred CCCHHHHHHHH
Confidence 2344444433
No 67
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=95.86 E-value=0.21 Score=47.58 Aligned_cols=140 Identities=16% Similarity=0.176 Sum_probs=78.0
Q ss_pred CEEEEEecCCCccChhhHHHHHHHhhccCCCC---C------cceEEEecCceeeEEEEeCCCCCh-----------HHH
Q 003796 79 PRVIVLFGLSASVNLNSVREDLLRQLSSEGTG---A------LSSTVSSSKYRLRTSVLQAPHGDL-----------VGC 138 (795)
Q Consensus 79 P~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~---~------g~~tv~~~r~k~Ritfie~~~~dl-----------~~~ 138 (795)
...|+++|++++++. ++ +..+.+.... . ..........+.++.++..| .-. ...
T Consensus 3 ~~~i~~~G~~g~GKt-tl----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtp-G~~~~~~~~~~~~~~~~ 76 (168)
T cd04163 3 SGFVAIVGRPNVGKS-TL----LNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTP-GIHKPKKKLGERMVKAA 76 (168)
T ss_pred eeEEEEECCCCCCHH-HH----HHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECC-CCCcchHHHHHHHHHHH
Confidence 356999999999886 67 4444333211 0 11111111124678899987 311 123
Q ss_pred HHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchhhhHHHHHHHHhhcccccCCCC
Q 003796 139 MEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKKRKDLKKMCISSLTSEFPEDC 218 (795)
Q Consensus 139 LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~~~Kk~~~~kK~lk~~f~~ef~~~~ 218 (795)
...+.-+|++++++|++.. +......++..++..+.|- +.|+++.|.. ....... .+..++....+ ..
T Consensus 77 ~~~~~~~d~i~~v~d~~~~--------~~~~~~~~~~~~~~~~~~~-iiv~nK~Dl~-~~~~~~~-~~~~~~~~~~~-~~ 144 (168)
T cd04163 77 WSALKDVDLVLFVVDASEP--------IGEGDEFILELLKKSKTPV-ILVLNKIDLV-KDKEDLL-PLLEKLKELGP-FA 144 (168)
T ss_pred HHHHHhCCEEEEEEECCCc--------cCchHHHHHHHHHHhCCCE-EEEEEchhcc-ccHHHHH-HHHHHHHhccC-CC
Confidence 4457789999999999842 4455567777887778774 5667887751 1111222 22223333333 45
Q ss_pred eeEEeCC--HHHHHHHHHHH
Q 003796 219 KFYAADT--KDELHKFLWLF 236 (795)
Q Consensus 219 Klf~l~~--~~E~~nL~R~I 236 (795)
+++.++. ...+..|...|
T Consensus 145 ~~~~~s~~~~~~~~~l~~~l 164 (168)
T cd04163 145 EIFPISALKGENVDELLEEI 164 (168)
T ss_pred ceEEEEeccCCChHHHHHHH
Confidence 6777763 23334444444
No 68
>PRK12739 elongation factor G; Reviewed
Probab=95.79 E-value=0.097 Score=63.88 Aligned_cols=121 Identities=13% Similarity=0.059 Sum_probs=81.3
Q ss_pred CEEEEEecCCCccChhhHHHHHHHhhc---cC---CC-----------CC-------cceEEEecCceeeEEEEeCCC--
Q 003796 79 PRVIVLFGLSASVNLNSVREDLLRQLS---SE---GT-----------GA-------LSSTVSSSKYRLRTSVLQAPH-- 132 (795)
Q Consensus 79 P~iV~Vvg~~~~~~~~sl~~~lvk~~~---~~---~~-----------~~-------g~~tv~~~r~k~Ritfie~~~-- 132 (795)
.+-|+|+|..+.++. +|++.|+.... +. .. .. ..+++... +..+.|+.+|-
T Consensus 8 irni~iiGh~~~GKs-TL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~--~~~i~liDTPG~~ 84 (691)
T PRK12739 8 TRNIGIMAHIDAGKT-TTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWK--GHRINIIDTPGHV 84 (691)
T ss_pred eeEEEEECCCCCCHH-HHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEEC--CEEEEEEcCCCHH
Confidence 457999999887775 66555554211 00 00 00 23333333 47899999982
Q ss_pred CChHHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchhhhHHHHHHHHhhcc
Q 003796 133 GDLVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKKRKDLKKMCISSLT 211 (795)
Q Consensus 133 ~dl~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~~~Kk~~~~kK~lk~~f~ 211 (795)
.-+..+..+...||.+|||+||..| ++..+.+++..+..+|+|.+ .+++.+|........+.+.++..|.
T Consensus 85 ~f~~e~~~al~~~D~~ilVvDa~~g--------~~~qt~~i~~~~~~~~~p~i-v~iNK~D~~~~~~~~~~~~i~~~l~ 154 (691)
T PRK12739 85 DFTIEVERSLRVLDGAVAVFDAVSG--------VEPQSETVWRQADKYGVPRI-VFVNKMDRIGADFFRSVEQIKDRLG 154 (691)
T ss_pred HHHHHHHHHHHHhCeEEEEEeCCCC--------CCHHHHHHHHHHHHcCCCEE-EEEECCCCCCCCHHHHHHHHHHHhC
Confidence 1246788899999999999999965 77888999999999999975 6788888511223345555555553
No 69
>PRK00007 elongation factor G; Reviewed
Probab=95.72 E-value=0.1 Score=63.74 Aligned_cols=121 Identities=11% Similarity=0.042 Sum_probs=80.7
Q ss_pred EEEEEecCCCccChhhHHHHHHHhhc---c---CCC-----------CC-------cceEEEecCceeeEEEEeCCC-C-
Q 003796 80 RVIVLFGLSASVNLNSVREDLLRQLS---S---EGT-----------GA-------LSSTVSSSKYRLRTSVLQAPH-G- 133 (795)
Q Consensus 80 ~iV~Vvg~~~~~~~~sl~~~lvk~~~---~---~~~-----------~~-------g~~tv~~~r~k~Ritfie~~~-~- 133 (795)
+-|+|+|-.+.++. +|++.|+.... . ... .. ..+++... +++++||.+|- .
T Consensus 11 rni~iiG~~~~GKs-TL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~--~~~~~liDTPG~~~ 87 (693)
T PRK00007 11 RNIGIMAHIDAGKT-TTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWK--DHRINIIDTPGHVD 87 (693)
T ss_pred eEEEEECCCCCCHH-HHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEEC--CeEEEEEeCCCcHH
Confidence 46999999987775 66565553221 0 000 00 22233322 57899999982 1
Q ss_pred ChHHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchhhhHHHHHHHHhhccc
Q 003796 134 DLVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKKRKDLKKMCISSLTS 212 (795)
Q Consensus 134 dl~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~~~Kk~~~~kK~lk~~f~~ 212 (795)
-+..+..+...||.+|||+||..| +...+.+++..+..+|+|.+ .+++.+|........+...++.+|..
T Consensus 88 f~~ev~~al~~~D~~vlVvda~~g--------~~~qt~~~~~~~~~~~~p~i-v~vNK~D~~~~~~~~~~~~i~~~l~~ 157 (693)
T PRK00007 88 FTIEVERSLRVLDGAVAVFDAVGG--------VEPQSETVWRQADKYKVPRI-AFVNKMDRTGADFYRVVEQIKDRLGA 157 (693)
T ss_pred HHHHHHHHHHHcCEEEEEEECCCC--------cchhhHHHHHHHHHcCCCEE-EEEECCCCCCCCHHHHHHHHHHHhCC
Confidence 235688899999999999999965 77889999999999999975 67888885112233455556555543
No 70
>PRK13351 elongation factor G; Reviewed
Probab=95.61 E-value=0.16 Score=61.90 Aligned_cols=120 Identities=12% Similarity=0.059 Sum_probs=78.0
Q ss_pred EEEEEecCCCccChhhHHHHHHHhhc---c----------CCCC----C-------cceEEEecCceeeEEEEeCCC-CC
Q 003796 80 RVIVLFGLSASVNLNSVREDLLRQLS---S----------EGTG----A-------LSSTVSSSKYRLRTSVLQAPH-GD 134 (795)
Q Consensus 80 ~iV~Vvg~~~~~~~~sl~~~lvk~~~---~----------~~~~----~-------g~~tv~~~r~k~Ritfie~~~-~d 134 (795)
+-|+|+|..+.++. +|++.|+.... + .+.. . ...++... +.++.|+.+|- .|
T Consensus 9 rni~iiG~~~~GKT-tL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~--~~~i~liDtPG~~d 85 (687)
T PRK13351 9 RNIGILAHIDAGKT-TLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWD--NHRINLIDTPGHID 85 (687)
T ss_pred cEEEEECCCCCcch-hHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEEC--CEEEEEEECCCcHH
Confidence 56999999987775 66555553210 0 0000 0 12233322 57899999983 23
Q ss_pred -hHHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchhhhHHHHHHHHhhcc
Q 003796 135 -LVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKKRKDLKKMCISSLT 211 (795)
Q Consensus 135 -l~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~~~Kk~~~~kK~lk~~f~ 211 (795)
...+..+.+.||.+|||+|++.| ....+.++++.+...|+|.+ .|++.+|........+...++.+|.
T Consensus 86 f~~~~~~~l~~aD~~ilVvd~~~~--------~~~~~~~~~~~~~~~~~p~i-iviNK~D~~~~~~~~~~~~i~~~l~ 154 (687)
T PRK13351 86 FTGEVERSLRVLDGAVVVFDAVTG--------VQPQTETVWRQADRYGIPRL-IFINKMDRVGADLFKVLEDIEERFG 154 (687)
T ss_pred HHHHHHHHHHhCCEEEEEEeCCCC--------CCHHHHHHHHHHHhcCCCEE-EEEECCCCCCCCHHHHHHHHHHHHC
Confidence 34567889999999999999965 66778899999999999965 4888888521233344555554443
No 71
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=95.56 E-value=0.34 Score=45.37 Aligned_cols=103 Identities=14% Similarity=0.133 Sum_probs=60.2
Q ss_pred eeEEEEeCCCC------Ch---HHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCC
Q 003796 123 LRTSVLQAPHG------DL---VGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLP 193 (795)
Q Consensus 123 ~Ritfie~~~~------dl---~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld 193 (795)
.+++|+.+|.- .. ..+..++..+|++++++|++.+ .......++..+...+.| ++.|+++.|
T Consensus 45 ~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il~v~~~~~~--------~~~~~~~~~~~~~~~~~~-~ivv~nK~D 115 (163)
T cd00880 45 GPVVLIDTPGIDEAGGLGREREELARRVLERADLILFVVDADLR--------ADEEEEKLLELLRERGKP-VLLVLNKID 115 (163)
T ss_pred CcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEEEEEeCCCC--------CCHHHHHHHHHHHhcCCe-EEEEEEccc
Confidence 47889988731 11 4666788999999999999953 333333356666667777 567889988
Q ss_pred cchhhhHHHHHHH-HhhcccccCCCCeeEEeCCHH--HHHHHHHHH
Q 003796 194 TDLKKRKDLKKMC-ISSLTSEFPEDCKFYAADTKD--ELHKFLWLF 236 (795)
Q Consensus 194 ~~~Kk~~~~kK~l-k~~f~~ef~~~~Klf~l~~~~--E~~nL~R~I 236 (795)
. .......... ..........+..+|.++..+ .+..|...|
T Consensus 116 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l~~~l 159 (163)
T cd00880 116 L--LPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDELREAL 159 (163)
T ss_pred c--CChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHHHHHH
Confidence 5 1111111111 112222334478888887432 244444443
No 72
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=95.44 E-value=0.41 Score=55.97 Aligned_cols=179 Identities=17% Similarity=0.172 Sum_probs=120.9
Q ss_pred ceeeEEEEeCCC-CC-hHHHHHHHhhhceEEEeeeCCCc-cccccccccC--hHHHHHHHHHHhcCCCceEEEeccCCc-
Q 003796 121 YRLRTSVLQAPH-GD-LVGCMEMAKVADLVAFVASASSF-SEESMSYYID--SFGNQCLSVFRSLGLPSTAVLIRDLPT- 194 (795)
Q Consensus 121 ~k~Ritfie~~~-~d-l~~~LD~aKvADlVll~idas~g-~~~~~~~~fe--~eg~e~L~~l~aqG~P~vigVl~~Ld~- 194 (795)
.+..+|++..|- .| +-.||--|--||..+|++||+.| || .+|| ..|.|.+.+|++-|+..+|.+++.+|.
T Consensus 253 ~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE----~gfd~~gQtrEha~llr~Lgi~qlivaiNKmD~V 328 (603)
T KOG0458|consen 253 KSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFE----SGFDPGGQTREHALLLRSLGISQLIVAINKMDLV 328 (603)
T ss_pred CceeEEEecCCCccccchhhhccccccceEEEEEECCcchhh----hccCCCCchHHHHHHHHHcCcceEEEEeeccccc
Confidence 357999999984 45 55799999999999999999987 22 2455 378999999999999999999999995
Q ss_pred chhh-hH-HHHHHHHhhccc---ccCCCCeeEEeCC-----------HHH------HHHHHHHHhhccccCcccccCCCe
Q 003796 195 DLKK-RK-DLKKMCISSLTS---EFPEDCKFYAADT-----------KDE------LHKFLWLFKEQRLTVPHWRNQRPF 252 (795)
Q Consensus 195 ~~Kk-~~-~~kK~lk~~f~~---ef~~~~Klf~l~~-----------~~E------~~nL~R~Is~~k~r~l~WR~~rpY 252 (795)
+|-+ |- .++..|..++.. ++-..-++.++|+ .++ .-+|+-.|=..++-.=. -..|.
T Consensus 329 ~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~~~~~~l~~WY~Gp~LL~~id~~~~p~~~--~~kPl 406 (603)
T KOG0458|consen 329 SWSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKIEQENELSQWYKGPTLLSQIDSFKIPERP--IDKPL 406 (603)
T ss_pred CccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCcccccccchhhhhhhcCChHHHHHhhccCCCCc--ccCCe
Confidence 5554 33 478888888732 2223347777773 112 12455555543321111 22255
Q ss_pred EEEEeeEeccCCCCCCCceEEEEEEEeCCCCCCCCeEEe-CCCCceeeceeeccCCCCC
Q 003796 253 LMAQKVDVVADDCNSGKCTLLLHGYLRAHCLSVNQLVHI-SGAGDFQLGKIEILKDPFP 310 (795)
Q Consensus 253 mLadr~e~~~~~~~~~~~~l~v~GyvRG~~l~~n~lVHI-pG~GDfqi~~I~~~~dP~p 310 (795)
.|.=.-.+ +. ... .++|+|=|--..+-.|+.|.| |+.=|++|..|+.=..||-
T Consensus 407 ~ltIsdi~-~~---~~~-~~~i~gkiesG~iq~gqkl~i~~s~e~~~vk~l~~~~~~~~ 460 (603)
T KOG0458|consen 407 RLTISDIY-PL---PSS-GVSISGKIESGYIQPGQKLYIMTSREDATVKGLTSNDEPKT 460 (603)
T ss_pred EEEhhhee-ec---CCC-eeEEEEEEeccccccCCEEEEecCcceEEEEeeecCCCcce
Confidence 54322111 11 112 389999998888888988887 7778999999987655543
No 73
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=95.40 E-value=0.31 Score=53.40 Aligned_cols=134 Identities=10% Similarity=0.103 Sum_probs=109.7
Q ss_pred CceeeEEEEeCCCCC--hHHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc-ch
Q 003796 120 KYRLRTSVLQAPHGD--LVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT-DL 196 (795)
Q Consensus 120 r~k~Ritfie~~~~d--l~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~-~~ 196 (795)
++-||++|+.||--+ +..||.-|-+.|=.||||.|+.-+ =...|.|=|-+|.--|+-+++.|=+.+|. .-
T Consensus 83 ~l~R~VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpc-------PQPQT~EHl~AleIigik~iiIvQNKIDlV~~ 155 (415)
T COG5257 83 ELVRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPC-------PQPQTREHLMALEIIGIKNIIIVQNKIDLVSR 155 (415)
T ss_pred cEEEEEEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCC-------CCCchHHHHHHHhhhccceEEEEecccceecH
Confidence 567999999998433 667999999999999999999643 34579999999999999999999888885 21
Q ss_pred hhhHHHHHHHHhhcccccCCCCeeEEeCC--HHHHHHHHHHHhhccccCcccccCCCeEEEEeeEe
Q 003796 197 KKRKDLKKMCISSLTSEFPEDCKFYAADT--KDELHKFLWLFKEQRLTVPHWRNQRPFLMAQKVDV 260 (795)
Q Consensus 197 Kk~~~~kK~lk~~f~~ef~~~~Klf~l~~--~~E~~nL~R~Is~~k~r~l~WR~~rpYmLadr~e~ 260 (795)
.+....-+.+|.|++--...++.+.++|. ...|--|+-+|...-|.|.+==+..|-|++-|-=+
T Consensus 156 E~AlE~y~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP~rd~~~~p~m~v~RSFD 221 (415)
T COG5257 156 ERALENYEQIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTPERDLDKPPRMYVARSFD 221 (415)
T ss_pred HHHHHHHHHHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCCccCCCCCceEEEEeecc
Confidence 23345677788899988999999999995 55677899999988888888888999998888433
No 74
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=95.39 E-value=0.19 Score=52.67 Aligned_cols=64 Identities=11% Similarity=0.069 Sum_probs=51.6
Q ss_pred eeeEEEEeCCC-CC-hHHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc
Q 003796 122 RLRTSVLQAPH-GD-LVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT 194 (795)
Q Consensus 122 k~Ritfie~~~-~d-l~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~ 194 (795)
+..+.|+.+|- .+ ...+..+.+.||.+|||+|+..| ....+.++++.+...|+| ++.|++.+|.
T Consensus 72 ~~~i~iiDTPG~~~f~~~~~~~l~~aD~~ilVvD~~~g--------~~~~t~~~l~~~~~~~~p-~ilviNKiD~ 137 (222)
T cd01885 72 EYLINLIDSPGHVDFSSEVTAALRLCDGALVVVDAVEG--------VCVQTETVLRQALKERVK-PVLVINKIDR 137 (222)
T ss_pred ceEEEEECCCCccccHHHHHHHHHhcCeeEEEEECCCC--------CCHHHHHHHHHHHHcCCC-EEEEEECCCc
Confidence 56788998872 23 44678889999999999999965 667789999999889997 6677787774
No 75
>COG1159 Era GTPase [General function prediction only]
Probab=95.25 E-value=0.29 Score=53.16 Aligned_cols=140 Identities=16% Similarity=0.186 Sum_probs=80.0
Q ss_pred EEEEecCCCccChhhHHHHHHHhhccCCCC--------C--cceEEEecCceeeEEEEeCCC-----CChH-----HHHH
Q 003796 81 VIVLFGLSASVNLNSVREDLLRQLSSEGTG--------A--LSSTVSSSKYRLRTSVLQAPH-----GDLV-----GCME 140 (795)
Q Consensus 81 iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~--------~--g~~tv~~~r~k~Ritfie~~~-----~dl~-----~~LD 140 (795)
.|||||.|..+.+ .| +.++.++... . ....++... ...+.|+..|- +.++ ....
T Consensus 8 fVaIiGrPNvGKS-TL----lN~l~G~KisIvS~k~QTTR~~I~GI~t~~-~~QiIfvDTPGih~pk~~l~~~m~~~a~~ 81 (298)
T COG1159 8 FVAIIGRPNVGKS-TL----LNALVGQKISIVSPKPQTTRNRIRGIVTTD-NAQIIFVDTPGIHKPKHALGELMNKAARS 81 (298)
T ss_pred EEEEEcCCCCcHH-HH----HHHHhcCceEeecCCcchhhhheeEEEEcC-CceEEEEeCCCCCCcchHHHHHHHHHHHH
Confidence 5999999997775 66 4444443321 1 222333332 56778887652 2232 3445
Q ss_pred HHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc-chhhhHHHHHHHHhhcccccCCCCe
Q 003796 141 MAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT-DLKKRKDLKKMCISSLTSEFPEDCK 219 (795)
Q Consensus 141 ~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~-~~Kk~~~~kK~lk~~f~~ef~~~~K 219 (795)
+.+=||+||||+|+..+ +...-+.+|+.|+....| ++.+++.+|. ..+.. . ..+......-++ -..
T Consensus 82 sl~dvDlilfvvd~~~~--------~~~~d~~il~~lk~~~~p-vil~iNKID~~~~~~~--l-~~~~~~~~~~~~-f~~ 148 (298)
T COG1159 82 ALKDVDLILFVVDADEG--------WGPGDEFILEQLKKTKTP-VILVVNKIDKVKPKTV--L-LKLIAFLKKLLP-FKE 148 (298)
T ss_pred HhccCcEEEEEEecccc--------CCccHHHHHHHHhhcCCC-eEEEEEccccCCcHHH--H-HHHHHHHHhhCC-cce
Confidence 67789999999999953 767778889999883344 5556777774 11221 1 223333333333 346
Q ss_pred eEEeCC--HHHHHHHHHHHhhc
Q 003796 220 FYAADT--KDELHKFLWLFKEQ 239 (795)
Q Consensus 220 lf~l~~--~~E~~nL~R~Is~~ 239 (795)
+|.+|. -..+..|+..|...
T Consensus 149 ivpiSA~~g~n~~~L~~~i~~~ 170 (298)
T COG1159 149 IVPISALKGDNVDTLLEIIKEY 170 (298)
T ss_pred EEEeeccccCCHHHHHHHHHHh
Confidence 777662 33344444444433
No 76
>PRK03003 GTP-binding protein Der; Reviewed
Probab=95.04 E-value=0.62 Score=54.30 Aligned_cols=128 Identities=16% Similarity=0.146 Sum_probs=75.0
Q ss_pred CCEEEEEecCCCccChhhHHHHHHHhhccCCC---CC--c----c--eEEEecCceeeEEEEeCCCC-----------Ch
Q 003796 78 PPRVIVLFGLSASVNLNSVREDLLRQLSSEGT---GA--L----S--STVSSSKYRLRTSVLQAPHG-----------DL 135 (795)
Q Consensus 78 pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~---~~--g----~--~tv~~~r~k~Ritfie~~~~-----------dl 135 (795)
-+.-|+|+|.++.+.. +| +..|+.... .. | + .++... .+.+.|+..+ . ..
T Consensus 210 ~~~kI~iiG~~nvGKS-SL----in~l~~~~~~~~s~~~gtT~d~~~~~~~~~--~~~~~l~DTa-G~~~~~~~~~~~e~ 281 (472)
T PRK03003 210 GPRRVALVGKPNVGKS-SL----LNKLAGEERSVVDDVAGTTVDPVDSLIELG--GKTWRFVDTA-GLRRRVKQASGHEY 281 (472)
T ss_pred cceEEEEECCCCCCHH-HH----HHHHhCCCcccccCCCCccCCcceEEEEEC--CEEEEEEECC-CccccccccchHHH
Confidence 3567899999998876 77 444433221 11 1 1 122222 2467777776 3 22
Q ss_pred HHH---HHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc-chhhhHHHHHHHHhhcc
Q 003796 136 VGC---MEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT-DLKKRKDLKKMCISSLT 211 (795)
Q Consensus 136 ~~~---LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~-~~Kk~~~~kK~lk~~f~ 211 (795)
.+. +.+.+-||++|+|+|++.+ +.....+++..+...|.| ++.|++..|. +...+....+.+...+.
T Consensus 282 ~~~~~~~~~i~~ad~vilV~Da~~~--------~s~~~~~~~~~~~~~~~p-iIiV~NK~Dl~~~~~~~~~~~~i~~~l~ 352 (472)
T PRK03003 282 YASLRTHAAIEAAEVAVVLIDASEP--------ISEQDQRVLSMVIEAGRA-LVLAFNKWDLVDEDRRYYLEREIDRELA 352 (472)
T ss_pred HHHHHHHHHHhcCCEEEEEEeCCCC--------CCHHHHHHHHHHHHcCCC-EEEEEECcccCChhHHHHHHHHHHHhcc
Confidence 222 3456889999999999965 444455678888888987 5667787775 11112233444444443
Q ss_pred cccCCCCeeEEeC
Q 003796 212 SEFPEDCKFYAAD 224 (795)
Q Consensus 212 ~ef~~~~Klf~l~ 224 (795)
.. ..+.++.+|
T Consensus 353 ~~--~~~~~~~~S 363 (472)
T PRK03003 353 QV--PWAPRVNIS 363 (472)
T ss_pred cC--CCCCEEEEE
Confidence 22 136778877
No 77
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=94.99 E-value=0.34 Score=50.00 Aligned_cols=65 Identities=14% Similarity=0.171 Sum_probs=48.5
Q ss_pred ceeeEEEEeCCC-CCh-HHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc
Q 003796 121 YRLRTSVLQAPH-GDL-VGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT 194 (795)
Q Consensus 121 ~k~Ritfie~~~-~dl-~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~ 194 (795)
.+.+++|+.+|- .++ ..++.....||.+|+|+|++.+ ...++.++++.+..+|+| ++.|++.+|.
T Consensus 69 ~~~~i~iiDtpG~~~f~~~~~~~~~~aD~~llVvD~~~~--------~~~~~~~~~~~~~~~~~p-~iiviNK~D~ 135 (213)
T cd04167 69 KSYLFNIIDTPGHVNFMDEVAAALRLSDGVVLVVDVVEG--------VTSNTERLIRHAILEGLP-IVLVINKIDR 135 (213)
T ss_pred CEEEEEEEECCCCcchHHHHHHHHHhCCEEEEEEECCCC--------CCHHHHHHHHHHHHcCCC-EEEEEECccc
Confidence 357899999873 233 4677788999999999999864 444567788888888876 5567777774
No 78
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=94.97 E-value=0.3 Score=57.74 Aligned_cols=80 Identities=18% Similarity=0.179 Sum_probs=58.0
Q ss_pred eeeEEEEeCCC-CChHH-HHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchhhh
Q 003796 122 RLRTSVLQAPH-GDLVG-CMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKKR 199 (795)
Q Consensus 122 k~Ritfie~~~-~dl~~-~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~~~Kk~ 199 (795)
..++.++.+|- .|+.. +.-+...||.+|+|+|++.| .+..+..+++.++..|+| ++.+++.+|......
T Consensus 78 ~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~g--------v~~~t~~l~~~~~~~~iP-iiv~iNK~D~~~a~~ 148 (526)
T PRK00741 78 DCLINLLDTPGHEDFSEDTYRTLTAVDSALMVIDAAKG--------VEPQTRKLMEVCRLRDTP-IFTFINKLDRDGREP 148 (526)
T ss_pred CEEEEEEECCCchhhHHHHHHHHHHCCEEEEEEecCCC--------CCHHHHHHHHHHHhcCCC-EEEEEECCcccccCH
Confidence 46799999972 23433 66677899999999999965 777899999999999999 677889888521222
Q ss_pred HHHHHHHHhhc
Q 003796 200 KDLKKMCISSL 210 (795)
Q Consensus 200 ~~~kK~lk~~f 210 (795)
..+...++..|
T Consensus 149 ~~~l~~i~~~l 159 (526)
T PRK00741 149 LELLDEIEEVL 159 (526)
T ss_pred HHHHHHHHHHh
Confidence 23444454444
No 79
>PRK03003 GTP-binding protein Der; Reviewed
Probab=94.97 E-value=0.21 Score=58.27 Aligned_cols=114 Identities=15% Similarity=0.136 Sum_probs=65.7
Q ss_pred cCCCCCCCCEEEEEecCCCccChhhHHHHHHHhhcc-CCCCCcce----EEEecCceeeEEEEeCCCCC-----h----H
Q 003796 71 ASSGIASPPRVIVLFGLSASVNLNSVREDLLRQLSS-EGTGALSS----TVSSSKYRLRTSVLQAPHGD-----L----V 136 (795)
Q Consensus 71 ~~~~~~~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~-~~~~~g~~----tv~~~r~k~Ritfie~~~~d-----l----~ 136 (795)
.+|+..+.+..|+|||.++.+.. +|++.|+..-.. .....|.. .....-....+.++.++--+ + .
T Consensus 30 ~~~~~~~~~~~V~IvG~~nvGKS-SL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~ 108 (472)
T PRK03003 30 LEAAEGGPLPVVAVVGRPNVGKS-TLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVA 108 (472)
T ss_pred hhcccCCCCCEEEEEcCCCCCHH-HHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHH
Confidence 34444444556999999998886 773333321100 01111221 11111012468888887211 1 1
Q ss_pred -HHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc
Q 003796 137 -GCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT 194 (795)
Q Consensus 137 -~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~ 194 (795)
.+.-+.+-||+||||+|++.+ ....-.++++.|+..|.| ++.|++.+|.
T Consensus 109 ~~~~~~~~~aD~il~VvD~~~~--------~s~~~~~i~~~l~~~~~p-iilV~NK~Dl 158 (472)
T PRK03003 109 EQAEVAMRTADAVLFVVDATVG--------ATATDEAVARVLRRSGKP-VILAANKVDD 158 (472)
T ss_pred HHHHHHHHhCCEEEEEEECCCC--------CCHHHHHHHHHHHHcCCC-EEEEEECccC
Confidence 123357889999999999965 223346778888888877 6667888885
No 80
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=94.91 E-value=0.77 Score=46.62 Aligned_cols=101 Identities=15% Similarity=0.169 Sum_probs=58.3
Q ss_pred EEEEEecCCCccChhhHHHHHHHhhccCCCC--C------cce--EEEecCceeeEEEEeCCCCC-----------hHHH
Q 003796 80 RVIVLFGLSASVNLNSVREDLLRQLSSEGTG--A------LSS--TVSSSKYRLRTSVLQAPHGD-----------LVGC 138 (795)
Q Consensus 80 ~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~--~------g~~--tv~~~r~k~Ritfie~~~~d-----------l~~~ 138 (795)
..|+|+|+++++.. +| ++.+++.... . .+. .+..+. ...++|+..| .- +.++
T Consensus 42 ~~I~iiG~~g~GKS-tL----l~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~i~Dt~-G~~~~~~~~~~~~~~~~ 114 (204)
T cd01878 42 PTVALVGYTNAGKS-TL----FNALTGADVYAEDQLFATLDPTTRRLRLPD-GREVLLTDTV-GFIRDLPHQLVEAFRST 114 (204)
T ss_pred CeEEEECCCCCCHH-HH----HHHHhcchhccCCccceeccceeEEEEecC-CceEEEeCCC-ccccCCCHHHHHHHHHH
Confidence 46899999998886 77 5545433211 0 121 122222 2378888776 43 2334
Q ss_pred HHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCC--CceEEEeccCCc
Q 003796 139 MEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGL--PSTAVLIRDLPT 194 (795)
Q Consensus 139 LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~--P~vigVl~~Ld~ 194 (795)
+..+.-||.+++++|++.+ ..++ ....++..++..+. ..++.|++..|.
T Consensus 115 ~~~~~~~d~ii~v~D~~~~------~~~~-~~~~~~~~l~~~~~~~~~viiV~NK~Dl 165 (204)
T cd01878 115 LEEVAEADLLLHVVDASDP------DYEE-QIETVEKVLKELGAEDIPMILVLNKIDL 165 (204)
T ss_pred HHHHhcCCeEEEEEECCCC------Chhh-HHHHHHHHHHHcCcCCCCEEEEEEcccc
Confidence 4556679999999999853 1121 12233444444443 347778888885
No 81
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=94.89 E-value=0.56 Score=45.57 Aligned_cols=138 Identities=14% Similarity=0.138 Sum_probs=72.1
Q ss_pred EEEEecCCCccChhhHHHHHHHhhccCCCCC---cceE--EEecC---ceeeEEEEeCCCCC------------hHHHHH
Q 003796 81 VIVLFGLSASVNLNSVREDLLRQLSSEGTGA---LSST--VSSSK---YRLRTSVLQAPHGD------------LVGCME 140 (795)
Q Consensus 81 iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~~---g~~t--v~~~r---~k~Ritfie~~~~d------------l~~~LD 140 (795)
.|+|+|.++.+.. +| ++.++...... ...| +..+. ...+++|+..| .- ..++..
T Consensus 2 ~i~~~G~~~~GKs-sl----i~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~-G~~~~~~~~~~~~~~~~~~~ 75 (168)
T cd01897 2 TLVIAGYPNVGKS-SL----VNKLTRAKPEVAPYPFTTKSLFVGHFDYKYLRWQVIDTP-GLLDRPLEERNTIEMQAITA 75 (168)
T ss_pred eEEEEcCCCCCHH-HH----HHHHhcCCCccCCCCCcccceeEEEEccCceEEEEEECC-CcCCccccCCchHHHHHHHH
Confidence 3789999998875 77 55554433221 1111 11111 13688999887 42 122333
Q ss_pred HHhhhceEEEeeeCCCccccccccccC-hHHHHHHHHHHhc--CCCceEEEeccCCcchhhhHHHHHHHHhhcccccCCC
Q 003796 141 MAKVADLVAFVASASSFSEESMSYYID-SFGNQCLSVFRSL--GLPSTAVLIRDLPTDLKKRKDLKKMCISSLTSEFPED 217 (795)
Q Consensus 141 ~aKvADlVll~idas~g~~~~~~~~fe-~eg~e~L~~l~aq--G~P~vigVl~~Ld~~~Kk~~~~kK~lk~~f~~ef~~~ 217 (795)
.+-.+|.+|+|+|++.. ..+. ....+++..++.. +.| ++.|++..|. ........ ++.+. . .. .
T Consensus 76 ~~~~~d~~l~v~d~~~~------~~~~~~~~~~~~~~l~~~~~~~p-vilv~NK~Dl--~~~~~~~~-~~~~~-~-~~-~ 142 (168)
T cd01897 76 LAHLRAAVLFLFDPSET------CGYSLEEQLSLFEEIKPLFKNKP-VIVVLNKIDL--LTFEDLSE-IEEEE-E-LE-G 142 (168)
T ss_pred HHhccCcEEEEEeCCcc------cccchHHHHHHHHHHHhhcCcCC-eEEEEEcccc--CchhhHHH-HHHhh-h-hc-c
Confidence 33457999999999842 1221 2223566666554 554 6677888885 21111111 22221 1 12 4
Q ss_pred CeeEEeCC--HHHHHHHHHHHh
Q 003796 218 CKFYAADT--KDELHKFLWLFK 237 (795)
Q Consensus 218 ~Klf~l~~--~~E~~nL~R~Is 237 (795)
.++|..|. ...+..|...|+
T Consensus 143 ~~~~~~Sa~~~~gi~~l~~~l~ 164 (168)
T cd01897 143 EEVLKISTLTEEGVDEVKNKAC 164 (168)
T ss_pred CceEEEEecccCCHHHHHHHHH
Confidence 56777773 333445554444
No 82
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=94.88 E-value=0.31 Score=57.58 Aligned_cols=82 Identities=16% Similarity=0.195 Sum_probs=60.0
Q ss_pred eeeEEEEeCCC-CChHH-HHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchhhh
Q 003796 122 RLRTSVLQAPH-GDLVG-CMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKKR 199 (795)
Q Consensus 122 k~Ritfie~~~-~dl~~-~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~~~Kk~ 199 (795)
..++.|+.+|- .|+.. +..+...||.+|+|+|++.| ++..+..++..++..|+| ++.+++.+|......
T Consensus 79 ~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~g--------v~~~t~~l~~~~~~~~~P-iivviNKiD~~~~~~ 149 (527)
T TIGR00503 79 DCLVNLLDTPGHEDFSEDTYRTLTAVDNCLMVIDAAKG--------VETRTRKLMEVTRLRDTP-IFTFMNKLDRDIRDP 149 (527)
T ss_pred CeEEEEEECCChhhHHHHHHHHHHhCCEEEEEEECCCC--------CCHHHHHHHHHHHhcCCC-EEEEEECccccCCCH
Confidence 46888898872 24433 67778899999999999964 778889999999999998 666888888521223
Q ss_pred HHHHHHHHhhccc
Q 003796 200 KDLKKMCISSLTS 212 (795)
Q Consensus 200 ~~~kK~lk~~f~~ 212 (795)
.++...++.++..
T Consensus 150 ~~ll~~i~~~l~~ 162 (527)
T TIGR00503 150 LELLDEVENELKI 162 (527)
T ss_pred HHHHHHHHHHhCC
Confidence 3455666655543
No 83
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=94.65 E-value=0.81 Score=43.66 Aligned_cols=131 Identities=15% Similarity=0.086 Sum_probs=69.2
Q ss_pred EEEecCCCccChhhHHHHHH--HhhccCCCCCcceEEEe--cCceeeEEEEeCCC-CC----------hHHH----HHHH
Q 003796 82 IVLFGLSASVNLNSVREDLL--RQLSSEGTGALSSTVSS--SKYRLRTSVLQAPH-GD----------LVGC----MEMA 142 (795)
Q Consensus 82 V~Vvg~~~~~~~~sl~~~lv--k~~~~~~~~~g~~tv~~--~r~k~Ritfie~~~-~d----------l~~~----LD~a 142 (795)
|+++|.++.+.. +|++.|. ..........+. |... -.....++|+.+|. .+ ...+ +-..
T Consensus 2 i~l~G~~g~GKT-tL~~~l~~~~~~~~~~~~~~~-t~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (170)
T cd01876 2 IAFAGRSNVGKS-SLINALTNRKKLARTSKTPGK-TQLINFFNVNDKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENR 79 (170)
T ss_pred EEEEcCCCCCHH-HHHHHHhcCCceeeecCCCCc-ceeEEEEEccCeEEEecCCCccccccCHHHHHHHHHHHHHHHHhC
Confidence 789999998875 7733333 111111111111 1110 01123677787762 11 1222 2233
Q ss_pred hhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc-chhhhHHHHHHHHhhcccccCCCCeeE
Q 003796 143 KVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT-DLKKRKDLKKMCISSLTSEFPEDCKFY 221 (795)
Q Consensus 143 KvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~-~~Kk~~~~kK~lk~~f~~ef~~~~Klf 221 (795)
..++++++++|.... +.....++++.|...++| ++.|+++.|. ....+......+...+.. +.....+|
T Consensus 80 ~~~~~~~~v~d~~~~--------~~~~~~~~~~~l~~~~~~-vi~v~nK~D~~~~~~~~~~~~~~~~~l~~-~~~~~~~~ 149 (170)
T cd01876 80 ENLKGVVLLIDSRHG--------PTEIDLEMLDWLEELGIP-FLVVLTKADKLKKSELAKALKEIKKELKL-FEIDPPII 149 (170)
T ss_pred hhhhEEEEEEEcCcC--------CCHhHHHHHHHHHHcCCC-EEEEEEchhcCChHHHHHHHHHHHHHHHh-ccCCCceE
Confidence 346789999998742 345566788888888877 6667788774 112222333333333332 23356777
Q ss_pred EeC
Q 003796 222 AAD 224 (795)
Q Consensus 222 ~l~ 224 (795)
..|
T Consensus 150 ~~S 152 (170)
T cd01876 150 LFS 152 (170)
T ss_pred EEe
Confidence 776
No 84
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=94.63 E-value=0.59 Score=44.62 Aligned_cols=106 Identities=8% Similarity=0.033 Sum_probs=60.2
Q ss_pred EEEecCCCccChhhHHHHHHHhh--ccCCCCC---cceEEEecCceeeEEEEeCCCC-ChHHH-HHHHhhhceEEEeeeC
Q 003796 82 IVLFGLSASVNLNSVREDLLRQL--SSEGTGA---LSSTVSSSKYRLRTSVLQAPHG-DLVGC-MEMAKVADLVAFVASA 154 (795)
Q Consensus 82 V~Vvg~~~~~~~~sl~~~lvk~~--~~~~~~~---g~~tv~~~r~k~Ritfie~~~~-dl~~~-LD~aKvADlVll~ida 154 (795)
|+|+|+++++.. +|++.++..- .+...+. -...+..+...-++.++.+|.. ...++ ....+-+|.+++++|.
T Consensus 2 i~i~G~~~~GKT-sli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 80 (160)
T cd00876 2 VVVLGAGGVGKS-AITIQFVKGTFVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSI 80 (160)
T ss_pred EEEECCCCCCHH-HHHHHHHhCCCCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEEC
Confidence 789999998886 6733333211 0011111 1222333333467888999842 22332 3445679999999998
Q ss_pred CCccccccccccChHHHHHHHHHHhcC--CCceEEEeccCCc
Q 003796 155 SSFSEESMSYYIDSFGNQCLSVFRSLG--LPSTAVLIRDLPT 194 (795)
Q Consensus 155 s~g~~~~~~~~fe~eg~e~L~~l~aqG--~P~vigVl~~Ld~ 194 (795)
+.. ..++....-...+++..+ -+.++.|+++.|.
T Consensus 81 ~~~------~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 116 (160)
T cd00876 81 TDR------ESFEEIKGYREQILRVKDDEDIPIVLVGNKCDL 116 (160)
T ss_pred CCH------HHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcc
Confidence 742 234444444444444444 4566778888886
No 85
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=94.61 E-value=0.68 Score=56.83 Aligned_cols=127 Identities=16% Similarity=0.154 Sum_probs=75.7
Q ss_pred CEEEEEecCCCccChhhHHHHHHHhhccCCC---CC------cceE--EEecCceeeEEEEeCCCC-----------ChH
Q 003796 79 PRVIVLFGLSASVNLNSVREDLLRQLSSEGT---GA------LSST--VSSSKYRLRTSVLQAPHG-----------DLV 136 (795)
Q Consensus 79 P~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~---~~------g~~t--v~~~r~k~Ritfie~~~~-----------dl~ 136 (795)
+.-|+|+|.++.+.. +| +..++.... .. .++. +... ...++|+.++ . ...
T Consensus 450 ~~kI~ivG~~nvGKS-SL----in~l~~~~~~~v~~~~gtT~d~~~~~~~~~--~~~~~liDTa-G~~~~~~~~~~~e~~ 521 (712)
T PRK09518 450 LRRVALVGRPNVGKS-SL----LNQLTHEERAVVNDLAGTTRDPVDEIVEID--GEDWLFIDTA-GIKRRQHKLTGAEYY 521 (712)
T ss_pred CcEEEEECCCCCCHH-HH----HHHHhCccccccCCCCCCCcCcceeEEEEC--CCEEEEEECC-CcccCcccchhHHHH
Confidence 346899999998886 77 444433221 11 2221 2222 3467888887 3 222
Q ss_pred HH---HHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc-chhhhHHHHHHHHhhccc
Q 003796 137 GC---MEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT-DLKKRKDLKKMCISSLTS 212 (795)
Q Consensus 137 ~~---LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~-~~Kk~~~~kK~lk~~f~~ 212 (795)
+. +.+.+-||++|+|+|++.+ +......+++.+...|.| ++.|++..|. +.......++.+...|..
T Consensus 522 ~~~r~~~~i~~advvilViDat~~--------~s~~~~~i~~~~~~~~~p-iIiV~NK~DL~~~~~~~~~~~~~~~~l~~ 592 (712)
T PRK09518 522 SSLRTQAAIERSELALFLFDASQP--------ISEQDLKVMSMAVDAGRA-LVLVFNKWDLMDEFRRQRLERLWKTEFDR 592 (712)
T ss_pred HHHHHHHHhhcCCEEEEEEECCCC--------CCHHHHHHHHHHHHcCCC-EEEEEEchhcCChhHHHHHHHHHHHhccC
Confidence 22 3456789999999999965 555566777777778877 5567787774 111122344445444432
Q ss_pred ccCCCCeeEEeC
Q 003796 213 EFPEDCKFYAAD 224 (795)
Q Consensus 213 ef~~~~Klf~l~ 224 (795)
+ ..+.++++|
T Consensus 593 -~-~~~~ii~iS 602 (712)
T PRK09518 593 -V-TWARRVNLS 602 (712)
T ss_pred -C-CCCCEEEEE
Confidence 2 256778887
No 86
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=94.52 E-value=0.23 Score=56.72 Aligned_cols=96 Identities=10% Similarity=0.140 Sum_probs=65.5
Q ss_pred EEEecCCCccChhhHHHHHHHhhccCCC---CC--cc------eEEEecCceeeEEEEeCCCCC----------h-HHHH
Q 003796 82 IVLFGLSASVNLNSVREDLLRQLSSEGT---GA--LS------STVSSSKYRLRTSVLQAPHGD----------L-VGCM 139 (795)
Q Consensus 82 V~Vvg~~~~~~~~sl~~~lvk~~~~~~~---~~--g~------~tv~~~r~k~Ritfie~~~~d----------l-~~~L 139 (795)
|+|||.++.+.. +| +..|++... .. |. ..+... .++++++.+| .- + ..++
T Consensus 2 i~ivG~~nvGKS-tL----~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~--~~~~~liDTp-G~~~~~~~~~~~~~~~~~ 73 (429)
T TIGR03594 2 VAIVGRPNVGKS-TL----FNRLTGKRDAIVSDTPGVTRDRKYGDAEWG--GREFILIDTG-GIEEDDDGLDKQIREQAE 73 (429)
T ss_pred EEEECCCCCCHH-HH----HHHHhCCCcceecCCCCcccCceEEEEEEC--CeEEEEEECC-CCCCcchhHHHHHHHHHH
Confidence 899999998886 67 444433221 11 21 122222 3579999987 41 1 2245
Q ss_pred HHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc
Q 003796 140 EMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT 194 (795)
Q Consensus 140 D~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~ 194 (795)
.+.+-||+||||+|+..| +.....++.+.|+..|.| ++.|++..|.
T Consensus 74 ~~~~~ad~vl~vvD~~~~--------~~~~d~~i~~~l~~~~~p-iilVvNK~D~ 119 (429)
T TIGR03594 74 IAIEEADVILFVVDGREG--------LTPEDEEIAKWLRKSGKP-VILVANKIDG 119 (429)
T ss_pred HHHhhCCEEEEEEeCCCC--------CCHHHHHHHHHHHHhCCC-EEEEEECccC
Confidence 677889999999999965 666678889999989988 6667888775
No 87
>PRK12740 elongation factor G; Reviewed
Probab=94.43 E-value=1.2 Score=54.31 Aligned_cols=80 Identities=11% Similarity=0.122 Sum_probs=60.2
Q ss_pred eeeEEEEeCCCCCh---HHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchhh
Q 003796 122 RLRTSVLQAPHGDL---VGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKK 198 (795)
Q Consensus 122 k~Ritfie~~~~dl---~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~~~Kk 198 (795)
..+++|+.+| ... ..+..+...||.+|+++|++.| ....+..+++.+...|+|.++ |++.+|.....
T Consensus 59 ~~~i~liDtP-G~~~~~~~~~~~l~~aD~vllvvd~~~~--------~~~~~~~~~~~~~~~~~p~ii-v~NK~D~~~~~ 128 (668)
T PRK12740 59 GHKINLIDTP-GHVDFTGEVERALRVLDGAVVVVCAVGG--------VEPQTETVWRQAEKYGVPRII-FVNKMDRAGAD 128 (668)
T ss_pred CEEEEEEECC-CcHHHHHHHHHHHHHhCeEEEEEeCCCC--------cCHHHHHHHHHHHHcCCCEEE-EEECCCCCCCC
Confidence 4789999998 442 4577889999999999999964 566778889999999999665 88988852123
Q ss_pred hHHHHHHHHhhcc
Q 003796 199 RKDLKKMCISSLT 211 (795)
Q Consensus 199 ~~~~kK~lk~~f~ 211 (795)
...+.+.++.+|.
T Consensus 129 ~~~~~~~l~~~l~ 141 (668)
T PRK12740 129 FFRVLAQLQEKLG 141 (668)
T ss_pred HHHHHHHHHHHHC
Confidence 3456666666554
No 88
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=94.41 E-value=0.44 Score=58.20 Aligned_cols=121 Identities=14% Similarity=0.060 Sum_probs=77.2
Q ss_pred EEEEEecCCCccChhhHHHHHHHhhcc------CCC-----C------CcceEEEe-----cCceeeEEEEeCCC-CC-h
Q 003796 80 RVIVLFGLSASVNLNSVREDLLRQLSS------EGT-----G------ALSSTVSS-----SKYRLRTSVLQAPH-GD-L 135 (795)
Q Consensus 80 ~iV~Vvg~~~~~~~~sl~~~lvk~~~~------~~~-----~------~g~~tv~~-----~r~k~Ritfie~~~-~d-l 135 (795)
+-|+|+|..+.++. +|++.|+..-.. ... + ..-+|+.+ .-.+..++|+.+|- .+ .
T Consensus 11 rni~iiG~~~~GKs-TL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~~~ 89 (689)
T TIGR00484 11 RNIGISAHIDAGKT-TTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVDFT 89 (689)
T ss_pred cEEEEECCCCCCHH-HHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcchh
Confidence 57999999987775 565555532110 000 0 01222221 11247899999872 22 3
Q ss_pred HHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchhhhHHHHHHHHhhc
Q 003796 136 VGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKKRKDLKKMCISSL 210 (795)
Q Consensus 136 ~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~~~Kk~~~~kK~lk~~f 210 (795)
..+..+...||.+|||+|+..| ....+.++++.++.+|+|.++ |++.+|.......++...++..+
T Consensus 90 ~~~~~~l~~~D~~ilVvda~~g--------~~~~~~~~~~~~~~~~~p~iv-viNK~D~~~~~~~~~~~~i~~~l 155 (689)
T TIGR00484 90 VEVERSLRVLDGAVAVLDAVGG--------VQPQSETVWRQANRYEVPRIA-FVNKMDKTGANFLRVVNQIKQRL 155 (689)
T ss_pred HHHHHHHHHhCEEEEEEeCCCC--------CChhHHHHHHHHHHcCCCEEE-EEECCCCCCCCHHHHHHHHHHHh
Confidence 4577788999999999999965 667788999999999999764 78888851122334455555544
No 89
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=94.36 E-value=0.34 Score=56.33 Aligned_cols=133 Identities=17% Similarity=0.217 Sum_probs=88.3
Q ss_pred CCCEEEEEecCCCccChhhHHHHHHHhhccCCCCC----------cceEEEecCceeeEEEEeCCC-CChHHHH-HHHhh
Q 003796 77 SPPRVIVLFGLSASVNLNSVREDLLRQLSSEGTGA----------LSSTVSSSKYRLRTSVLQAPH-GDLVGCM-EMAKV 144 (795)
Q Consensus 77 ~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~~----------g~~tv~~~r~k~Ritfie~~~-~dl~~~L-D~aKv 144 (795)
+-|-||+|+|-=.-+.. +| +..+.+....+ |-++|..+ .=+++||+.-|- .-+.+|= --|+|
T Consensus 151 ~RpPVVTiMGHVDHGKT-TL----LD~lRks~VAA~E~GGITQhIGAF~V~~p-~G~~iTFLDTPGHaAF~aMRaRGA~v 224 (683)
T KOG1145|consen 151 PRPPVVTIMGHVDHGKT-TL----LDALRKSSVAAGEAGGITQHIGAFTVTLP-SGKSITFLDTPGHAAFSAMRARGANV 224 (683)
T ss_pred CCCCeEEEeecccCChh-hH----HHHHhhCceehhhcCCccceeceEEEecC-CCCEEEEecCCcHHHHHHHHhccCcc
Confidence 45667999997554443 45 55555544322 66677766 348999998873 2344543 35899
Q ss_pred hceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchhhhHHHHHHHHh-hccc-ccCCCCeeEE
Q 003796 145 ADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKKRKDLKKMCIS-SLTS-EFPEDCKFYA 222 (795)
Q Consensus 145 ADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~~~Kk~~~~kK~lk~-~f~~-ef~~~~Klf~ 222 (795)
+|+|+||+.|..| +=..|-|-+.-.+..++|=|++ |+.+|.....--++++.|-. =+-- .++.+.-+..
T Consensus 225 tDIvVLVVAadDG--------VmpQT~EaIkhAk~A~VpiVvA-inKiDkp~a~pekv~~eL~~~gi~~E~~GGdVQvip 295 (683)
T KOG1145|consen 225 TDIVVLVVAADDG--------VMPQTLEAIKHAKSANVPIVVA-INKIDKPGANPEKVKRELLSQGIVVEDLGGDVQVIP 295 (683)
T ss_pred ccEEEEEEEccCC--------ccHhHHHHHHHHHhcCCCEEEE-EeccCCCCCCHHHHHHHHHHcCccHHHcCCceeEEE
Confidence 9999999999965 6778999999999999997665 67777422334455554433 2222 3455667777
Q ss_pred eC
Q 003796 223 AD 224 (795)
Q Consensus 223 l~ 224 (795)
+|
T Consensus 296 iS 297 (683)
T KOG1145|consen 296 IS 297 (683)
T ss_pred ee
Confidence 76
No 90
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=94.30 E-value=0.94 Score=45.40 Aligned_cols=104 Identities=16% Similarity=0.148 Sum_probs=61.1
Q ss_pred CEEEEEecCCCccChhhHHHHHHHhhccCC-----CCCc----ceEEEe-cCceeeEEEEeCCC-CChHHHHHH-Hhhhc
Q 003796 79 PRVIVLFGLSASVNLNSVREDLLRQLSSEG-----TGAL----SSTVSS-SKYRLRTSVLQAPH-GDLVGCMEM-AKVAD 146 (795)
Q Consensus 79 P~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~-----~~~g----~~tv~~-~r~k~Ritfie~~~-~dl~~~LD~-aKvAD 146 (795)
++-|+++|+++++.. +| +..+.... .+.| .+++.. +.....+.++..+- ..+..+... .+.||
T Consensus 3 ~~kv~~vG~~~~GKT-sl----i~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d 77 (183)
T cd04152 3 SLHIVMLGLDSAGKT-TV----LYRLKFNEFVNTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTD 77 (183)
T ss_pred ceEEEEECCCCCCHH-HH----HHHHhcCCcCCcCCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCC
Confidence 456899999998886 67 44442211 1112 222322 11235678887762 225555544 67899
Q ss_pred eEEEeeeCCCccccccccccC---hHHHHHHHHHHhcCCCceEEEeccCCc
Q 003796 147 LVAFVASASSFSEESMSYYID---SFGNQCLSVFRSLGLPSTAVLIRDLPT 194 (795)
Q Consensus 147 lVll~idas~g~~~~~~~~fe---~eg~e~L~~l~aqG~P~vigVl~~Ld~ 194 (795)
.+|+|+|++.. ..|+ .+-.++++.+...+.| ++.|++..|.
T Consensus 78 ~ii~v~D~~~~------~~~~~~~~~~~~i~~~~~~~~~p-~iiv~NK~D~ 121 (183)
T cd04152 78 GIVFVVDSVDV------ERMEEAKTELHKITRFSENQGVP-VLVLANKQDL 121 (183)
T ss_pred EEEEEEECCCH------HHHHHHHHHHHHHHhhhhcCCCc-EEEEEECcCc
Confidence 99999999853 1232 2444566655556776 5666787775
No 91
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=94.30 E-value=0.28 Score=46.56 Aligned_cols=90 Identities=19% Similarity=0.180 Sum_probs=54.1
Q ss_pred EEEecCCCccChhhHHHHHHHhhccCCCCC-cceEEEecCceeeEEEEeCCCCC-------hHHHHHHHhhhceEEEeee
Q 003796 82 IVLFGLSASVNLNSVREDLLRQLSSEGTGA-LSSTVSSSKYRLRTSVLQAPHGD-------LVGCMEMAKVADLVAFVAS 153 (795)
Q Consensus 82 V~Vvg~~~~~~~~sl~~~lvk~~~~~~~~~-g~~tv~~~r~k~Ritfie~~~~d-------l~~~LD~aKvADlVll~id 153 (795)
|+|+|.++.+.. +| +..|+...... ..+++.. .. .++..| +. ..+++...+-||.+|+|+|
T Consensus 3 v~liG~~~vGKS-sL----~~~l~~~~~~~~~t~~~~~---~~--~~iDt~-G~~~~~~~~~~~~~~~~~~ad~vilv~d 71 (142)
T TIGR02528 3 IMFIGSVGCGKT-TL----TQALQGEEILYKKTQAVEY---ND--GAIDTP-GEYVENRRLYSALIVTAADADVIALVQS 71 (142)
T ss_pred EEEECCCCCCHH-HH----HHHHcCCccccccceeEEE---cC--eeecCc-hhhhhhHHHHHHHHHHhhcCCEEEEEec
Confidence 789999998886 77 55554433222 2233332 22 456666 43 4455667889999999999
Q ss_pred CCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc
Q 003796 154 ASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT 194 (795)
Q Consensus 154 as~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~ 194 (795)
++.+ ..|.. .+++..+ +- .++.|++..|.
T Consensus 72 ~~~~------~s~~~--~~~~~~~---~~-p~ilv~NK~Dl 100 (142)
T TIGR02528 72 ATDP------ESRFP--PGFASIF---VK-PVIGLVTKIDL 100 (142)
T ss_pred CCCC------CcCCC--hhHHHhc---cC-CeEEEEEeecc
Confidence 9854 22322 2333332 33 45667788885
No 92
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=94.20 E-value=0.62 Score=44.29 Aligned_cols=98 Identities=9% Similarity=0.070 Sum_probs=59.7
Q ss_pred EEecCCCccChhhHHHHHHHhhccCCC---CC-cceEE-----EecCceeeEEEEeCCC-CChH---------HHHHHHh
Q 003796 83 VLFGLSASVNLNSVREDLLRQLSSEGT---GA-LSSTV-----SSSKYRLRTSVLQAPH-GDLV---------GCMEMAK 143 (795)
Q Consensus 83 ~Vvg~~~~~~~~sl~~~lvk~~~~~~~---~~-g~~tv-----~~~r~k~Ritfie~~~-~dl~---------~~LD~aK 143 (795)
+++|.++.+.. +| +..+..... .. .++|. ........+.|+.+|. .+.. ..+....
T Consensus 1 ~l~G~~~~GKs-sl----~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~ 75 (157)
T cd01894 1 AIVGRPNVGKS-TL----FNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIE 75 (157)
T ss_pred CccCCCCCCHH-HH----HHHHhCCcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHH
Confidence 47888887775 67 333332221 11 11221 1111135788998873 2211 2345677
Q ss_pred hhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc
Q 003796 144 VADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT 194 (795)
Q Consensus 144 vADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~ 194 (795)
-||++++++|+..+ +.....+++..++.++.| ++.|++..|.
T Consensus 76 ~~d~ii~v~d~~~~--------~~~~~~~~~~~~~~~~~p-iiiv~nK~D~ 117 (157)
T cd01894 76 EADVILFVVDGREG--------LTPADEEIAKYLRKSKKP-VILVVNKVDN 117 (157)
T ss_pred hCCEEEEEEecccc--------CCccHHHHHHHHHhcCCC-EEEEEECccc
Confidence 89999999999854 444556788888888855 6678888885
No 93
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=94.18 E-value=0.32 Score=47.98 Aligned_cols=104 Identities=13% Similarity=0.152 Sum_probs=59.6
Q ss_pred EEEecCCCccChhhHHHHHHHhhccC-CCCCcceEEEecCceeeEEEEeCCCCC--hHHH-HHHHhhhceEEEeeeCCCc
Q 003796 82 IVLFGLSASVNLNSVREDLLRQLSSE-GTGALSSTVSSSKYRLRTSVLQAPHGD--LVGC-MEMAKVADLVAFVASASSF 157 (795)
Q Consensus 82 V~Vvg~~~~~~~~sl~~~lvk~~~~~-~~~~g~~tv~~~r~k~Ritfie~~~~d--l~~~-LD~aKvADlVll~idas~g 157 (795)
|+++|+++++.. +|++.+...+... ..+.|..+....-.+.+++++.++ .. +..+ ...++-||.+|+|+|++..
T Consensus 2 i~~~G~~~~GKT-sl~~~l~~~~~~~~~~t~g~~~~~~~~~~~~~~i~D~~-G~~~~~~~~~~~~~~a~~ii~V~D~s~~ 79 (167)
T cd04161 2 LLTVGLDNAGKT-TLVSALQGEIPKKVAPTVGFTPTKLRLDKYEVCIFDLG-GGANFRGIWVNYYAEAHGLVFVVDSSDD 79 (167)
T ss_pred EEEECCCCCCHH-HHHHHHhCCCCccccCcccceEEEEEECCEEEEEEECC-CcHHHHHHHHHHHcCCCEEEEEEECCch
Confidence 789999998886 6733333222111 111144332222225688999998 43 3444 4557889999999999842
Q ss_pred cccccccccChHHHHHHHHHHh---cCCCceEEEeccCCc
Q 003796 158 SEESMSYYIDSFGNQCLSVFRS---LGLPSTAVLIRDLPT 194 (795)
Q Consensus 158 ~~~~~~~~fe~eg~e~L~~l~a---qG~P~vigVl~~Ld~ 194 (795)
..|+.-...+-.+++. .+.| ++.|++..|.
T Consensus 80 ------~s~~~~~~~l~~l~~~~~~~~~p-iliv~NK~Dl 112 (167)
T cd04161 80 ------DRVQEVKEILRELLQHPRVSGKP-ILVLANKQDK 112 (167)
T ss_pred ------hHHHHHHHHHHHHHcCccccCCc-EEEEEeCCCC
Confidence 2244332233333332 3555 6667888885
No 94
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=94.08 E-value=1 Score=43.32 Aligned_cols=100 Identities=17% Similarity=0.183 Sum_probs=56.7
Q ss_pred EEEecCCCccChhhHHHHHHHhhccCC--CC-----CcceEEEecCceeeEEEEeCCCCC--hHHH-HHHHhhhceEEEe
Q 003796 82 IVLFGLSASVNLNSVREDLLRQLSSEG--TG-----ALSSTVSSSKYRLRTSVLQAPHGD--LVGC-MEMAKVADLVAFV 151 (795)
Q Consensus 82 V~Vvg~~~~~~~~sl~~~lvk~~~~~~--~~-----~g~~tv~~~r~k~Ritfie~~~~d--l~~~-LD~aKvADlVll~ 151 (795)
|+|+|+++.++. +| +..|+... .. .|.........+.+++++..| .. ...+ -...+-||.+|+|
T Consensus 2 i~~vG~~~~GKT-sl----~~~l~~~~~~~~~~~~t~g~~~~~~~~~~~~~~l~Dt~-G~~~~~~~~~~~~~~~d~ii~v 75 (162)
T cd04157 2 ILVVGLDNSGKT-TI----INQLKPENAQSQIIVPTVGFNVESFEKGNLSFTAFDMS-GQGKYRGLWEHYYKNIQGIIFV 75 (162)
T ss_pred EEEECCCCCCHH-HH----HHHHcccCCCcceecCccccceEEEEECCEEEEEEECC-CCHhhHHHHHHHHccCCEEEEE
Confidence 789999998876 67 55554332 11 132111111124678889887 43 3333 3346889999999
Q ss_pred eeCCCccccccccccChHHHHHHHHHH-----hcCCCceEEEeccCCc
Q 003796 152 ASASSFSEESMSYYIDSFGNQCLSVFR-----SLGLPSTAVLIRDLPT 194 (795)
Q Consensus 152 idas~g~~~~~~~~fe~eg~e~L~~l~-----aqG~P~vigVl~~Ld~ 194 (795)
+|++.. ..|+....++-.+++ ..++| ++.|++..|.
T Consensus 76 ~D~~~~------~~~~~~~~~~~~~~~~~~~~~~~~p-~iiv~NK~Dl 116 (162)
T cd04157 76 IDSSDR------LRLVVVKDELELLLNHPDIKHRRVP-ILFFANKMDL 116 (162)
T ss_pred EeCCcH------HHHHHHHHHHHHHHcCcccccCCCC-EEEEEeCccc
Confidence 999853 223222222222333 24666 5667888885
No 95
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=94.03 E-value=0.52 Score=45.87 Aligned_cols=102 Identities=9% Similarity=0.078 Sum_probs=58.5
Q ss_pred EEEEEecCCCccChhhHHHHHHHhhccCC-CCC-cc--------eEEEecCceeeEEEEeCCCC-ChHHH-HHHHhhhce
Q 003796 80 RVIVLFGLSASVNLNSVREDLLRQLSSEG-TGA-LS--------STVSSSKYRLRTSVLQAPHG-DLVGC-MEMAKVADL 147 (795)
Q Consensus 80 ~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~-~~~-g~--------~tv~~~r~k~Ritfie~~~~-dl~~~-LD~aKvADl 147 (795)
.-|+|+|+++.+.. +| ++.++... ... ++ .++.....+.++.|+.++.. ....+ -...+.||.
T Consensus 8 ~~v~v~G~~~~GKS-sl----i~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 82 (169)
T cd04114 8 FKIVLIGNAGVGKT-CL----VRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANA 82 (169)
T ss_pred eEEEEECCCCCCHH-HH----HHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCE
Confidence 45899999998886 67 44443211 111 11 12333444457788888732 34443 567788999
Q ss_pred EEEeeeCCCccccccccccChHHHHHH---HHHHhcCCCceEEEeccCCc
Q 003796 148 VAFVASASSFSEESMSYYIDSFGNQCL---SVFRSLGLPSTAVLIRDLPT 194 (795)
Q Consensus 148 Vll~idas~g~~~~~~~~fe~eg~e~L---~~l~aqG~P~vigVl~~Ld~ 194 (795)
+|+++|.+.+ ..|+.- ...+ +.+...++|. +.|.+..|.
T Consensus 83 ~i~v~d~~~~------~s~~~~-~~~~~~l~~~~~~~~~~-i~v~NK~D~ 124 (169)
T cd04114 83 LILTYDITCE------ESFRCL-PEWLREIEQYANNKVIT-ILVGNKIDL 124 (169)
T ss_pred EEEEEECcCH------HHHHHH-HHHHHHHHHhCCCCCeE-EEEEECccc
Confidence 9999998853 223311 1233 3333346665 455777775
No 96
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=94.02 E-value=0.91 Score=42.89 Aligned_cols=99 Identities=14% Similarity=0.163 Sum_probs=59.4
Q ss_pred EEEecCCCccChhhHHHHHHHhhccCCCCC------cc--eEEEecCceeeEEEEeCCCC-ChHHH-HHHHhhhceEEEe
Q 003796 82 IVLFGLSASVNLNSVREDLLRQLSSEGTGA------LS--STVSSSKYRLRTSVLQAPHG-DLVGC-MEMAKVADLVAFV 151 (795)
Q Consensus 82 V~Vvg~~~~~~~~sl~~~lvk~~~~~~~~~------g~--~tv~~~r~k~Ritfie~~~~-dl~~~-LD~aKvADlVll~ 151 (795)
|+|+|+++.+.. +| ++.++...... |. ..+..+. ..+.++..+-. .+..+ -..++-+|.+|++
T Consensus 2 i~i~G~~~~GKs-sl----~~~l~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 74 (159)
T cd04159 2 ITLVGLQNSGKT-TL----VNVIAGGQFSEDTIPTVGFNMRKVTKGN--VTLKVWDLGGQPRFRSMWERYCRGVNAIVYV 74 (159)
T ss_pred EEEEcCCCCCHH-HH----HHHHccCCCCcCccCCCCcceEEEEECC--EEEEEEECCCCHhHHHHHHHHHhcCCEEEEE
Confidence 789999998886 77 55554432111 21 2333343 56778877621 23333 3557889999999
Q ss_pred eeCCCccccccccccChHHHHHHHHHHhc---CCCceEEEeccCCc
Q 003796 152 ASASSFSEESMSYYIDSFGNQCLSVFRSL---GLPSTAVLIRDLPT 194 (795)
Q Consensus 152 idas~g~~~~~~~~fe~eg~e~L~~l~aq---G~P~vigVl~~Ld~ 194 (795)
+|++.. ..|+.....+..+++.+ +.| ++.|++..|.
T Consensus 75 ~d~~~~------~~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~D~ 113 (159)
T cd04159 75 VDAADR------TALEAAKNELHDLLEKPSLEGIP-LLVLGNKNDL 113 (159)
T ss_pred EECCCH------HHHHHHHHHHHHHHcChhhcCCC-EEEEEeCccc
Confidence 999842 22444344455555443 454 5677888775
No 97
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=93.99 E-value=1 Score=43.51 Aligned_cols=140 Identities=11% Similarity=0.101 Sum_probs=74.8
Q ss_pred EEEecCCCccChhhHHHHHHHhhccCCC-----CCc--ceEEEecCceeeEEEEeCCCC-ChHHHHH-HHhhhceEEEee
Q 003796 82 IVLFGLSASVNLNSVREDLLRQLSSEGT-----GAL--SSTVSSSKYRLRTSVLQAPHG-DLVGCME-MAKVADLVAFVA 152 (795)
Q Consensus 82 V~Vvg~~~~~~~~sl~~~lvk~~~~~~~-----~~g--~~tv~~~r~k~Ritfie~~~~-dl~~~LD-~aKvADlVll~i 152 (795)
|+|+|.++.+.. +| +..++.... +.| ..++.. .+.++.|+.++-. ++..+-. ..+-||.+|+|+
T Consensus 2 v~lvG~~~~GKT-sl----~~~l~~~~~~~~~~t~~~~~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~ 74 (158)
T cd04151 2 ILILGLDNAGKT-TI----LYRLQLGEVVTTIPTIGFNVETVTY--KNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVV 74 (158)
T ss_pred EEEECCCCCCHH-HH----HHHHccCCCcCcCCccCcCeEEEEE--CCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEE
Confidence 689999998876 66 333322111 112 112222 2467889988732 3555433 467899999999
Q ss_pred eCCCccccccccccChHHHHHHHHHHhcCC--CceEEEeccCCcchh-hhHHHHHHHHhhccccc-CCCCeeEEeCC--H
Q 003796 153 SASSFSEESMSYYIDSFGNQCLSVFRSLGL--PSTAVLIRDLPTDLK-KRKDLKKMCISSLTSEF-PEDCKFYAADT--K 226 (795)
Q Consensus 153 das~g~~~~~~~~fe~eg~e~L~~l~aqG~--P~vigVl~~Ld~~~K-k~~~~kK~lk~~f~~ef-~~~~Klf~l~~--~ 226 (795)
|++.. ..|+.....+...++...+ ..++.|+++.|.... ....+.+.+.. .++ ..+.++|.+|. .
T Consensus 75 d~~~~------~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~i~~~~~~---~~~~~~~~~~~~~Sa~~~ 145 (158)
T cd04151 75 DSTDR------DRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSEAEISEKLGL---SELKDRTWSIFKTSAIKG 145 (158)
T ss_pred ECCCH------HHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCHHHHHHHhCc---cccCCCcEEEEEeeccCC
Confidence 99842 2244334455555554332 345777888885101 11222222211 111 12346888884 3
Q ss_pred HHHHHHHHHHh
Q 003796 227 DELHKFLWLFK 237 (795)
Q Consensus 227 ~E~~nL~R~Is 237 (795)
..+..|...|+
T Consensus 146 ~gi~~l~~~l~ 156 (158)
T cd04151 146 EGLDEGMDWLV 156 (158)
T ss_pred CCHHHHHHHHh
Confidence 44555555554
No 98
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=93.96 E-value=0.99 Score=43.92 Aligned_cols=141 Identities=16% Similarity=0.186 Sum_probs=72.8
Q ss_pred EEEecCCCccChhhHHHHHHH-hhc-cCCCCC---cceEEEecCceeeEEEEeCCCCC---hHHHHHHHhhhceEEEeee
Q 003796 82 IVLFGLSASVNLNSVREDLLR-QLS-SEGTGA---LSSTVSSSKYRLRTSVLQAPHGD---LVGCMEMAKVADLVAFVAS 153 (795)
Q Consensus 82 V~Vvg~~~~~~~~sl~~~lvk-~~~-~~~~~~---g~~tv~~~r~k~Ritfie~~~~d---l~~~LD~aKvADlVll~id 153 (795)
|+|+|+++.+.. +|++.++. .+. .+..+. ....+......-++.++..+... ........+-||.+|+++|
T Consensus 2 i~vvG~~~~GKt-sli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d 80 (165)
T cd04146 2 IAVLGASGVGKS-ALVVRFLTKRFIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVYS 80 (165)
T ss_pred EEEECCCCCcHH-HHHHHHHhCccccccCCChHHhceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEEE
Confidence 789999998876 66322221 011 111111 12223334334578889887322 2345567788999999999
Q ss_pred CCCccccccccccChHHHHHHHHHHh-----cCCCceEEEeccCCcchhh---hHHHHHHHHhhcccccCCCCeeEEeCC
Q 003796 154 ASSFSEESMSYYIDSFGNQCLSVFRS-----LGLPSTAVLIRDLPTDLKK---RKDLKKMCISSLTSEFPEDCKFYAADT 225 (795)
Q Consensus 154 as~g~~~~~~~~fe~eg~e~L~~l~a-----qG~P~vigVl~~Ld~~~Kk---~~~~kK~lk~~f~~ef~~~~Klf~l~~ 225 (795)
++.. ..|+.- ..++..++. .+.| ++.|.+..|....+ .....+.. ..+ +..+|..|.
T Consensus 81 ~~~~------~s~~~~-~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~v~~~~~~~~~-----~~~--~~~~~e~Sa 145 (165)
T cd04146 81 ITDR------SSFDEI-SQLKQLIREIKKRDREIP-VILVGNKADLLHYRQVSTEEGEKLA-----SEL--GCLFFEVSA 145 (165)
T ss_pred CCCH------HHHHHH-HHHHHHHHHHhcCCCCCC-EEEEEECCchHHhCccCHHHHHHHH-----HHc--CCEEEEeCC
Confidence 9853 234422 112233332 3555 56667877751011 11111211 122 356777775
Q ss_pred H---HHHHHHHHHHhh
Q 003796 226 K---DELHKFLWLFKE 238 (795)
Q Consensus 226 ~---~E~~nL~R~Is~ 238 (795)
. ..+..+...|+.
T Consensus 146 ~~~~~~v~~~f~~l~~ 161 (165)
T cd04146 146 AEDYDGVHSVFHELCR 161 (165)
T ss_pred CCCchhHHHHHHHHHH
Confidence 3 346666666653
No 99
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=93.90 E-value=1.1 Score=52.69 Aligned_cols=132 Identities=12% Similarity=0.194 Sum_probs=69.6
Q ss_pred EEEecCCCccChhhHHHHHHHhhccCCCC--C------cceEEEecCceeeEEEEeCCCCCh----------HHHHHHHh
Q 003796 82 IVLFGLSASVNLNSVREDLLRQLSSEGTG--A------LSSTVSSSKYRLRTSVLQAPHGDL----------VGCMEMAK 143 (795)
Q Consensus 82 V~Vvg~~~~~~~~sl~~~lvk~~~~~~~~--~------g~~tv~~~r~k~Ritfie~~~~dl----------~~~LD~aK 143 (795)
|++||+|+.+.+ +| +..++..... . .|+.-++.-...+|+|+..| .=+ ...|-.+.
T Consensus 162 V~LVG~PNAGKS-TL----ln~Ls~akpkIadypfTTl~P~lGvv~~~~~~f~laDtP-Gliegas~g~gLg~~fLrhie 235 (500)
T PRK12296 162 VGLVGFPSAGKS-SL----ISALSAAKPKIADYPFTTLVPNLGVVQAGDTRFTVADVP-GLIPGASEGKGLGLDFLRHIE 235 (500)
T ss_pred EEEEEcCCCCHH-HH----HHHHhcCCccccccCcccccceEEEEEECCeEEEEEECC-CCccccchhhHHHHHHHHHHH
Confidence 899999998886 77 5555432211 1 22221121123578899887 522 34566677
Q ss_pred hhceEEEeeeCCCccc-cccccccChHHHHHHHHH----------HhcCCCceEEEeccCCcchhhhHHHHHHHHhhccc
Q 003796 144 VADLVAFVASASSFSE-ESMSYYIDSFGNQCLSVF----------RSLGLPSTAVLIRDLPTDLKKRKDLKKMCISSLTS 212 (795)
Q Consensus 144 vADlVll~idas~g~~-~~~~~~fe~eg~e~L~~l----------~aqG~P~vigVl~~Ld~~~Kk~~~~kK~lk~~f~~ 212 (795)
-||+||+|+|++.... .+.-..++..-.|+...+ ...+.|. |.|++..|. .........++..+..
T Consensus 236 radvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~-IVVlNKiDL--~da~el~e~l~~~l~~ 312 (500)
T PRK12296 236 RCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPR-LVVLNKIDV--PDARELAEFVRPELEA 312 (500)
T ss_pred hcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCE-EEEEECccc--hhhHHHHHHHHHHHHH
Confidence 7999999999974100 000001233333444333 2345664 567888775 1111222223333322
Q ss_pred ccCCCCeeEEeCC
Q 003796 213 EFPEDCKFYAADT 225 (795)
Q Consensus 213 ef~~~~Klf~l~~ 225 (795)
. +.++|.+|.
T Consensus 313 ~---g~~Vf~ISA 322 (500)
T PRK12296 313 R---GWPVFEVSA 322 (500)
T ss_pred c---CCeEEEEEC
Confidence 1 467999983
No 100
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=93.84 E-value=1.5 Score=42.20 Aligned_cols=100 Identities=14% Similarity=0.187 Sum_probs=58.8
Q ss_pred EEEecCCCccChhhHHHHHHHhhccCCCCC-----c--ceEEEecCceeeEEEEeCCCC-ChHHHHH-HHhhhceEEEee
Q 003796 82 IVLFGLSASVNLNSVREDLLRQLSSEGTGA-----L--SSTVSSSKYRLRTSVLQAPHG-DLVGCME-MAKVADLVAFVA 152 (795)
Q Consensus 82 V~Vvg~~~~~~~~sl~~~lvk~~~~~~~~~-----g--~~tv~~~r~k~Ritfie~~~~-dl~~~LD-~aKvADlVll~i 152 (795)
|+|+|+++++.. +| +..|....... | ...+..+ .+.++.++..+-. .+..+.. ..+-||.+|+|+
T Consensus 2 i~i~G~~~~GKT-sl----~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~ 75 (160)
T cd04156 2 VLLLGLDSAGKS-TL----LYKLKHAELVTTIPTVGFNVEMLQLE-KHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVV 75 (160)
T ss_pred EEEEcCCCCCHH-HH----HHHHhcCCcccccCccCcceEEEEeC-CceEEEEEECCCCHhHHHHHHHHhccCCEEEEEE
Confidence 789999998886 67 45443322111 1 1122223 2467888888722 2344333 467799999999
Q ss_pred eCCCccccccccccChHHHHHHHHHHh---cCCCceEEEeccCCc
Q 003796 153 SASSFSEESMSYYIDSFGNQCLSVFRS---LGLPSTAVLIRDLPT 194 (795)
Q Consensus 153 das~g~~~~~~~~fe~eg~e~L~~l~a---qG~P~vigVl~~Ld~ 194 (795)
|++.. ..|+..-..+..+++. .+.| ++.|++..|.
T Consensus 76 D~~~~------~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl 113 (160)
T cd04156 76 DSSDE------ARLDESQKELKHILKNEHIKGVP-VVLLANKQDL 113 (160)
T ss_pred ECCcH------HHHHHHHHHHHHHHhchhhcCCC-EEEEEECccc
Confidence 99853 2244444444444443 4544 6667887774
No 101
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=93.82 E-value=1.1 Score=44.28 Aligned_cols=102 Identities=15% Similarity=0.114 Sum_probs=61.5
Q ss_pred CEEEEEecCCCccChhhHHHHHHHhhcc-CC----CCCcc--eEEEecCceeeEEEEeCCCCC--hHHHH-HHHhhhceE
Q 003796 79 PRVIVLFGLSASVNLNSVREDLLRQLSS-EG----TGALS--STVSSSKYRLRTSVLQAPHGD--LVGCM-EMAKVADLV 148 (795)
Q Consensus 79 P~iV~Vvg~~~~~~~~sl~~~lvk~~~~-~~----~~~g~--~tv~~~r~k~Ritfie~~~~d--l~~~L-D~aKvADlV 148 (795)
.+-|+++|+++++.. +| +..++. .- .+.|. .++... +.++.|+..+ .. +..+. ...+-||.+
T Consensus 15 ~~kv~~~G~~~~GKT-sl----~~~l~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~D~~-G~~~~~~~~~~~~~~~d~v 86 (174)
T cd04153 15 EYKVIIVGLDNAGKT-TI----LYQFLLGEVVHTSPTIGSNVEEIVYK--NIRFLMWDIG-GQESLRSSWNTYYTNTDAV 86 (174)
T ss_pred ccEEEEECCCCCCHH-HH----HHHHccCCCCCcCCccccceEEEEEC--CeEEEEEECC-CCHHHHHHHHHHhhcCCEE
Confidence 356899999998886 66 444422 11 11122 122222 3578888887 43 33333 346889999
Q ss_pred EEeeeCCCccccccccccChHHHHHHHHHHhcCC--CceEEEeccCCc
Q 003796 149 AFVASASSFSEESMSYYIDSFGNQCLSVFRSLGL--PSTAVLIRDLPT 194 (795)
Q Consensus 149 ll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~--P~vigVl~~Ld~ 194 (795)
|||+|++.. +.|...-.++.++++..++ +.++.|++..|.
T Consensus 87 i~V~D~s~~------~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl 128 (174)
T cd04153 87 ILVIDSTDR------ERLPLTKEELYKMLAHEDLRKAVLLVLANKQDL 128 (174)
T ss_pred EEEEECCCH------HHHHHHHHHHHHHHhchhhcCCCEEEEEECCCC
Confidence 999999853 2354444556666666654 345667888875
No 102
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=93.79 E-value=0.87 Score=44.64 Aligned_cols=102 Identities=7% Similarity=0.002 Sum_probs=61.0
Q ss_pred EEEEecCCCccChhhHHHHHHHhhccCC------CCCc----ceEEEecCceeeEEEEeCCCC-ChHHHH-HHHhhhceE
Q 003796 81 VIVLFGLSASVNLNSVREDLLRQLSSEG------TGAL----SSTVSSSKYRLRTSVLQAPHG-DLVGCM-EMAKVADLV 148 (795)
Q Consensus 81 iV~Vvg~~~~~~~~sl~~~lvk~~~~~~------~~~g----~~tv~~~r~k~Ritfie~~~~-dl~~~L-D~aKvADlV 148 (795)
=|+|+|.++.+.. +| +..|.... .+.| +.++.......+++++..+-. .+.++. -.++-||.+
T Consensus 6 ki~vvG~~~vGKS-sL----l~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 80 (168)
T cd01866 6 KYIIIGDTGVGKS-CL----LLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGA 80 (168)
T ss_pred EEEEECCCCCCHH-HH----HHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEE
Confidence 4899999998886 67 44443322 1112 233444444558888887632 234432 356789999
Q ss_pred EEeeeCCCccccccccccChHHHHHHHHHHhcCCC--ceEEEeccCCc
Q 003796 149 AFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLP--STAVLIRDLPT 194 (795)
Q Consensus 149 ll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P--~vigVl~~Ld~ 194 (795)
|||+|++.. ..|+. -..++..++.+..| .++.|.+..|.
T Consensus 81 l~v~d~~~~------~s~~~-~~~~~~~~~~~~~~~~pvivv~nK~Dl 121 (168)
T cd01866 81 LLVYDITRR------ETFNH-LTSWLEDARQHSNSNMTIMLIGNKCDL 121 (168)
T ss_pred EEEEECCCH------HHHHH-HHHHHHHHHHhCCCCCcEEEEEECccc
Confidence 999999842 22432 33566666555333 45666788885
No 103
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=93.68 E-value=0.9 Score=43.71 Aligned_cols=101 Identities=9% Similarity=0.038 Sum_probs=58.7
Q ss_pred EEEecCCCccChhhHHHHHHHhhccCCC--CC----c----ceEEEecCceeeEEEEeCCCCC-hHH-HHHHHhhhceEE
Q 003796 82 IVLFGLSASVNLNSVREDLLRQLSSEGT--GA----L----SSTVSSSKYRLRTSVLQAPHGD-LVG-CMEMAKVADLVA 149 (795)
Q Consensus 82 V~Vvg~~~~~~~~sl~~~lvk~~~~~~~--~~----g----~~tv~~~r~k~Ritfie~~~~d-l~~-~LD~aKvADlVl 149 (795)
|+++|+++++.. +| +..+..... .. + ...+..+....++.++.+|-.. ... +-..++-||++|
T Consensus 3 i~liG~~~~GKS-sl----i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii 77 (161)
T cd01861 3 LVFLGDQSVGKT-SI----ITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 77 (161)
T ss_pred EEEECCCCCCHH-HH----HHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEE
Confidence 789999998876 67 444432221 11 1 2233344445678999987322 223 344578899999
Q ss_pred EeeeCCCccccccccccChHHHHHHHH-HHhcCC-CceEEEeccCCc
Q 003796 150 FVASASSFSEESMSYYIDSFGNQCLSV-FRSLGL-PSTAVLIRDLPT 194 (795)
Q Consensus 150 l~idas~g~~~~~~~~fe~eg~e~L~~-l~aqG~-P~vigVl~~Ld~ 194 (795)
+++|.+.. ..|+... ..+.. ++..+- ..++.|+++.|.
T Consensus 78 ~v~d~~~~------~s~~~~~-~~~~~~~~~~~~~~~iilv~nK~D~ 117 (161)
T cd01861 78 VVYDITNR------QSFDNTD-KWIDDVRDERGNDVIIVLVGNKTDL 117 (161)
T ss_pred EEEECcCH------HHHHHHH-HHHHHHHHhCCCCCEEEEEEEChhc
Confidence 99999853 2354433 34443 334441 345566777775
No 104
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=93.59 E-value=1.1 Score=51.21 Aligned_cols=143 Identities=8% Similarity=0.135 Sum_probs=77.1
Q ss_pred EEEecCCCccChhhHHHHHHHhhccCCC-------CC-cceEEEec-CceeeEEEEeCCCCCh----------HHHHHHH
Q 003796 82 IVLFGLSASVNLNSVREDLLRQLSSEGT-------GA-LSSTVSSS-KYRLRTSVLQAPHGDL----------VGCMEMA 142 (795)
Q Consensus 82 V~Vvg~~~~~~~~sl~~~lvk~~~~~~~-------~~-g~~tv~~~-r~k~Ritfie~~~~dl----------~~~LD~a 142 (795)
|++||+|+.+.+ +| ++.+++... +. .|+.-++. .-.++|+|+-.| .=+ ..+|...
T Consensus 162 ValVG~PNaGKS-TL----ln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtP-Gi~~~a~~~~~Lg~~~l~~i 235 (390)
T PRK12298 162 VGLLGLPNAGKS-TF----IRAVSAAKPKVADYPFTTLVPNLGVVRVDDERSFVVADIP-GLIEGASEGAGLGIRFLKHL 235 (390)
T ss_pred EEEEcCCCCCHH-HH----HHHHhCCcccccCCCCCccCcEEEEEEeCCCcEEEEEeCC-CccccccchhhHHHHHHHHH
Confidence 999999998875 67 444443321 11 22222221 113679999887 432 3567778
Q ss_pred hhhceEEEeeeCCCccccccccccChHHHHHHHHHHhc-----CCCceEEEeccCCcchhhhHHHHHHHHhhcccccCCC
Q 003796 143 KVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSL-----GLPSTAVLIRDLPTDLKKRKDLKKMCISSLTSEFPED 217 (795)
Q Consensus 143 KvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aq-----G~P~vigVl~~Ld~~~Kk~~~~kK~lk~~f~~ef~~~ 217 (795)
.=||++|+|+|++..... ..++ .-..+++.|... +.|. +.|++.+|. -......+.++... ..+...
T Consensus 236 ~radvlL~VVD~s~~~~~---d~~e-~~~~l~~eL~~~~~~L~~kP~-IlVlNKiDl--~~~~el~~~l~~l~-~~~~~~ 307 (390)
T PRK12298 236 ERCRVLLHLIDIAPIDGS---DPVE-NARIIINELEKYSPKLAEKPR-WLVFNKIDL--LDEEEAEERAKAIV-EALGWE 307 (390)
T ss_pred HhCCEEEEEeccCccccc---ChHH-HHHHHHHHHHhhhhhhcCCCE-EEEEeCCcc--CChHHHHHHHHHHH-HHhCCC
Confidence 889999999998721000 1111 123444555443 4554 557898886 11122222333221 222222
Q ss_pred CeeEEeCC--HHHHHHHHHHHhh
Q 003796 218 CKFYAADT--KDELHKFLWLFKE 238 (795)
Q Consensus 218 ~Klf~l~~--~~E~~nL~R~Is~ 238 (795)
.++|.+|. ...+..|+..|..
T Consensus 308 ~~Vi~ISA~tg~GIdeLl~~I~~ 330 (390)
T PRK12298 308 GPVYLISAASGLGVKELCWDLMT 330 (390)
T ss_pred CCEEEEECCCCcCHHHHHHHHHH
Confidence 36888884 4456667777654
No 105
>PTZ00416 elongation factor 2; Provisional
Probab=93.58 E-value=0.31 Score=60.81 Aligned_cols=64 Identities=11% Similarity=0.073 Sum_probs=51.7
Q ss_pred eeeEEEEeCCC-CC-hHHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc
Q 003796 122 RLRTSVLQAPH-GD-LVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT 194 (795)
Q Consensus 122 k~Ritfie~~~-~d-l~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~ 194 (795)
..++.|+.+|- .| +..++.+++.||.+|||+||..| +...+..+++.+...|+|.+ .+++.+|.
T Consensus 91 ~~~i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g--------~~~~t~~~~~~~~~~~~p~i-v~iNK~D~ 156 (836)
T PTZ00416 91 PFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEG--------VCVQTETVLRQALQERIRPV-LFINKVDR 156 (836)
T ss_pred ceEEEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCC--------cCccHHHHHHHHHHcCCCEE-EEEEChhh
Confidence 35799999983 23 45688899999999999999965 78889999999999999875 45666664
No 106
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=93.55 E-value=0.92 Score=44.06 Aligned_cols=142 Identities=15% Similarity=0.134 Sum_probs=69.9
Q ss_pred EEEecCCCccChhhHHHHHHHhhccCCCC--C--cc------eEEEecCceeeEEEEeCCCCC----------hHHHHHH
Q 003796 82 IVLFGLSASVNLNSVREDLLRQLSSEGTG--A--LS------STVSSSKYRLRTSVLQAPHGD----------LVGCMEM 141 (795)
Q Consensus 82 V~Vvg~~~~~~~~sl~~~lvk~~~~~~~~--~--g~------~tv~~~r~k~Ritfie~~~~d----------l~~~LD~ 141 (795)
|+|||.++.+.. +| ++.++..... . ++ -.+..+. ..+++|+..| .- ....+..
T Consensus 3 v~ivG~~~~GKS-tl----~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~-~~~~~l~Dtp-G~~~~~~~~~~~~~~~~~~ 75 (170)
T cd01898 3 VGLVGLPNAGKS-TL----LSAISNAKPKIADYPFTTLVPNLGVVRVDD-GRSFVVADIP-GLIEGASEGKGLGHRFLRH 75 (170)
T ss_pred eEEECCCCCCHH-HH----HHHHhcCCccccCCCccccCCcceEEEcCC-CCeEEEEecC-cccCcccccCCchHHHHHH
Confidence 799999998886 77 5555433211 1 11 1122222 2378888887 41 1233444
Q ss_pred HhhhceEEEeeeCCCccccccccccChHHHHHHHHHHh-cCCCceEEEeccCCcchhhhHHHHHHHHhhcccccCCCCee
Q 003796 142 AKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRS-LGLPSTAVLIRDLPTDLKKRKDLKKMCISSLTSEFPEDCKF 220 (795)
Q Consensus 142 aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~a-qG~P~vigVl~~Ld~~~Kk~~~~kK~lk~~f~~ef~~~~Kl 220 (795)
.+-||.+|+++|++... +....+..+-.++...... .+.| ++.|++..|. ..+......++.... .. ....+
T Consensus 76 ~~~~d~vi~v~D~~~~~--~~~~~~~~~~~~l~~~~~~~~~~p-~ivv~NK~Dl--~~~~~~~~~~~~~~~-~~-~~~~~ 148 (170)
T cd01898 76 IERTRLLLHVIDLSGDD--DPVEDYKTIRNELELYNPELLEKP-RIVVLNKIDL--LDEEELFELLKELLK-EL-WGKPV 148 (170)
T ss_pred HHhCCEEEEEEecCCCC--CHHHHHHHHHHHHHHhCccccccc-cEEEEEchhc--CCchhhHHHHHHHHh-hC-CCCCE
Confidence 56699999999998520 0000122222233322211 2334 4567888885 111222222222222 21 13456
Q ss_pred EEeCC--HHHHHHHHHHHh
Q 003796 221 YAADT--KDELHKFLWLFK 237 (795)
Q Consensus 221 f~l~~--~~E~~nL~R~Is 237 (795)
|.+|. ...+..|...|+
T Consensus 149 ~~~Sa~~~~gi~~l~~~i~ 167 (170)
T cd01898 149 FPISALTGEGLDELLRKLA 167 (170)
T ss_pred EEEecCCCCCHHHHHHHHH
Confidence 77663 344556655554
No 107
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=93.53 E-value=0.45 Score=51.63 Aligned_cols=131 Identities=10% Similarity=0.059 Sum_probs=103.6
Q ss_pred eeEEEEeCCCCCh--HHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc-chhhh
Q 003796 123 LRTSVLQAPHGDL--VGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT-DLKKR 199 (795)
Q Consensus 123 ~Ritfie~~~~dl--~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~-~~Kk~ 199 (795)
|-++|+.||--|+ ..||.-|-|.|-+||++-|...+ =...|-|-|.++...-+-.+|-+-+.+|. .-...
T Consensus 125 RHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsC-------PQPQTsEHLaaveiM~LkhiiilQNKiDli~e~~A 197 (466)
T KOG0466|consen 125 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESC-------PQPQTSEHLAAVEIMKLKHIIILQNKIDLIKESQA 197 (466)
T ss_pred EEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCC-------CCCchhhHHHHHHHhhhceEEEEechhhhhhHHHH
Confidence 6789999997674 57999999999999999888543 23467888888888888888877667775 11223
Q ss_pred HHHHHHHHhhcccccCCCCeeEEeCC--HHHHHHHHHHHhhccccCcccccCCCeEEEEeeEe
Q 003796 200 KDLKKMCISSLTSEFPEDCKFYAADT--KDELHKFLWLFKEQRLTVPHWRNQRPFLMAQKVDV 260 (795)
Q Consensus 200 ~~~kK~lk~~f~~ef~~~~Klf~l~~--~~E~~nL~R~Is~~k~r~l~WR~~rpYmLadr~e~ 260 (795)
...-..+++++..-...++-+.++|. +=.|--++-+|...-|-|++==.+.|-|++=|-=+
T Consensus 198 ~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPvPvRdf~s~prlIVIRSFD 260 (466)
T KOG0466|consen 198 LEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPVPVRDFTSPPRLIVIRSFD 260 (466)
T ss_pred HHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCCCccccCCCCcEEEEEeec
Confidence 45667888899998999999999884 55677899999988888888778899998877443
No 108
>COG1160 Predicted GTPases [General function prediction only]
Probab=93.37 E-value=1.1 Score=51.23 Aligned_cols=133 Identities=14% Similarity=0.107 Sum_probs=83.2
Q ss_pred CCEEEEEecCCCccChhhHHHHHHHhhccCC------CC--C-cceEEEecCceeeEEEEeCC-------------CCCh
Q 003796 78 PPRVIVLFGLSASVNLNSVREDLLRQLSSEG------TG--A-LSSTVSSSKYRLRTSVLQAP-------------HGDL 135 (795)
Q Consensus 78 pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~------~~--~-g~~tv~~~r~k~Ritfie~~-------------~~dl 135 (795)
.|+=|||||=|..+.+ +| +..+.+.. .. + -+|++...+.-|++.||.-- .-.+
T Consensus 177 ~~ikiaiiGrPNvGKS-sL----iN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv 251 (444)
T COG1160 177 DPIKIAIIGRPNVGKS-SL----INAILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSV 251 (444)
T ss_pred CceEEEEEeCCCCCch-HH----HHHhccCceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEee
Confidence 6888999999998775 77 44443322 11 1 23333222122333333220 1334
Q ss_pred HHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEe--ccCCcchhhhHHHHHHHHhhcccc
Q 003796 136 VGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLI--RDLPTDLKKRKDLKKMCISSLTSE 213 (795)
Q Consensus 136 ~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl--~~Ld~~~Kk~~~~kK~lk~~f~~e 213 (795)
...+-+..-||+||||+||+.| |.++-..+++.+.-.|-+-||.|= .-++.+.......++.|.+.|.+
T Consensus 252 ~rt~~aI~~a~vvllviDa~~~--------~~~qD~~ia~~i~~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~- 322 (444)
T COG1160 252 ARTLKAIERADVVLLVIDATEG--------ISEQDLRIAGLIEEAGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPF- 322 (444)
T ss_pred hhhHhHHhhcCEEEEEEECCCC--------chHHHHHHHHHHHHcCCCeEEEEEccccCCchhhHHHHHHHHHHHHhcc-
Confidence 4556667779999999999955 888899999999999999999871 11221113344567777764443
Q ss_pred cCCCCeeEEeCC
Q 003796 214 FPEDCKFYAADT 225 (795)
Q Consensus 214 f~~~~Klf~l~~ 225 (795)
+ +.+.++++|.
T Consensus 323 l-~~a~i~~iSA 333 (444)
T COG1160 323 L-DFAPIVFISA 333 (444)
T ss_pred c-cCCeEEEEEe
Confidence 2 3689999983
No 109
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=93.32 E-value=0.68 Score=44.54 Aligned_cols=101 Identities=12% Similarity=0.090 Sum_probs=60.0
Q ss_pred EEEecCCCccChhhHHHHHHHhhccCCCCC----------cceEEEecCceeeEEEEeCCCCC-hHHH-HHHHhhhceEE
Q 003796 82 IVLFGLSASVNLNSVREDLLRQLSSEGTGA----------LSSTVSSSKYRLRTSVLQAPHGD-LVGC-MEMAKVADLVA 149 (795)
Q Consensus 82 V~Vvg~~~~~~~~sl~~~lvk~~~~~~~~~----------g~~tv~~~r~k~Ritfie~~~~d-l~~~-LD~aKvADlVl 149 (795)
|+|+|+++++.. +| ++.+....... ...++.....+.++.++.+|..+ ...+ .-.++-||.+|
T Consensus 3 v~v~G~~~~GKT-tl----i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 77 (164)
T smart00175 3 IILIGDSGVGKS-SL----LSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGAL 77 (164)
T ss_pred EEEECCCCCCHH-HH----HHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEE
Confidence 789999998886 67 44443322111 12334444445688899887322 2223 33456799999
Q ss_pred EeeeCCCccccccccccChHHHHHHHHHHhcCC--CceEEEeccCCc
Q 003796 150 FVASASSFSEESMSYYIDSFGNQCLSVFRSLGL--PSTAVLIRDLPT 194 (795)
Q Consensus 150 l~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~--P~vigVl~~Ld~ 194 (795)
+++|++.. ..|+.- ..+|+.+..+.- +.++.|.++.|.
T Consensus 78 lv~d~~~~------~s~~~~-~~~l~~~~~~~~~~~pivvv~nK~D~ 117 (164)
T smart00175 78 LVYDITNR------ESFENL-KNWLKELREYADPNVVIMLVGNKSDL 117 (164)
T ss_pred EEEECCCH------HHHHHH-HHHHHHHHHhCCCCCeEEEEEEchhc
Confidence 99999853 234332 235666655542 345556788775
No 110
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=93.23 E-value=0.9 Score=42.43 Aligned_cols=100 Identities=13% Similarity=0.170 Sum_probs=52.6
Q ss_pred EEEEEecCCCccChhhHHHHHHHhhccCCCCC----------cceEEEecCceeeEEEEeCCC-CChHHHHH--------
Q 003796 80 RVIVLFGLSASVNLNSVREDLLRQLSSEGTGA----------LSSTVSSSKYRLRTSVLQAPH-GDLVGCME-------- 140 (795)
Q Consensus 80 ~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~~----------g~~tv~~~r~k~Ritfie~~~-~dl~~~LD-------- 140 (795)
+=|+++|.+++++. +| +..+....... ....+..+.....+.++.+|. .+..++..
T Consensus 2 ~ki~~~G~~~~GKs-tl----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ 76 (161)
T TIGR00231 2 IKIVIVGDPNVGKS-TL----LNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVES 76 (161)
T ss_pred eEEEEECCCCCCHH-HH----HHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhE
Confidence 34899999998886 67 44333222111 111133333235678899873 23333222
Q ss_pred HHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc
Q 003796 141 MAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT 194 (795)
Q Consensus 141 ~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~ 194 (795)
++.++|++++++++.. ....+...+++.+.. +.| ++.|+++.|.
T Consensus 77 ~i~~~d~~~~v~~~~~--------~~~~~~~~~~~~~~~-~~p-~ivv~nK~D~ 120 (161)
T TIGR00231 77 SLRVFDIVILVLDVEE--------ILEKQTKEIIHHAES-NVP-IILVGNKIDL 120 (161)
T ss_pred EEEEEEEeeeehhhhh--------HhHHHHHHHHHhccc-CCc-EEEEEEcccC
Confidence 2334555555555542 122444555555543 777 5667888886
No 111
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=92.88 E-value=1 Score=43.52 Aligned_cols=100 Identities=10% Similarity=0.049 Sum_probs=58.6
Q ss_pred EEEecCCCccChhhHHHHHHHhhccCCC-CC-----c----ceEEEecCceeeEEEEeCCCC-ChHHH-HHHHhhhceEE
Q 003796 82 IVLFGLSASVNLNSVREDLLRQLSSEGT-GA-----L----SSTVSSSKYRLRTSVLQAPHG-DLVGC-MEMAKVADLVA 149 (795)
Q Consensus 82 V~Vvg~~~~~~~~sl~~~lvk~~~~~~~-~~-----g----~~tv~~~r~k~Ritfie~~~~-dl~~~-LD~aKvADlVl 149 (795)
|+|+|+++.+.. +| +..|..... .. | ...+..+...-++.++.++.. ....+ ...++-||.+|
T Consensus 3 i~v~G~~~vGKT-sl----i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i 77 (161)
T cd04113 3 FIIIGSSGTGKS-CL----LHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGAL 77 (161)
T ss_pred EEEECCCCCCHH-HH----HHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEE
Confidence 789999998886 67 444432221 11 2 223344444568889998732 23333 34467899999
Q ss_pred EeeeCCCccccccccccChHHHHHHHHHHh---cCCCceEEEeccCCc
Q 003796 150 FVASASSFSEESMSYYIDSFGNQCLSVFRS---LGLPSTAVLIRDLPT 194 (795)
Q Consensus 150 l~idas~g~~~~~~~~fe~eg~e~L~~l~a---qG~P~vigVl~~Ld~ 194 (795)
+++|++.. ..|+. -.+++..++. .++| ++.|++..|.
T Consensus 78 ~v~d~~~~------~s~~~-~~~~~~~~~~~~~~~~~-iivv~nK~D~ 117 (161)
T cd04113 78 LVYDITNR------TSFEA-LPTWLSDARALASPNIV-VILVGNKSDL 117 (161)
T ss_pred EEEECCCH------HHHHH-HHHHHHHHHHhCCCCCe-EEEEEEchhc
Confidence 99999853 22322 1234444433 3555 6667788875
No 112
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=92.88 E-value=1.9 Score=41.84 Aligned_cols=101 Identities=13% Similarity=0.120 Sum_probs=57.4
Q ss_pred EEEecCCCccChhhHHHHHHHhhccCCC------CCc----ceEEEecCceeeEEEEeCCCC-ChHHHH-HHHhhhceEE
Q 003796 82 IVLFGLSASVNLNSVREDLLRQLSSEGT------GAL----SSTVSSSKYRLRTSVLQAPHG-DLVGCM-EMAKVADLVA 149 (795)
Q Consensus 82 V~Vvg~~~~~~~~sl~~~lvk~~~~~~~------~~g----~~tv~~~r~k~Ritfie~~~~-dl~~~L-D~aKvADlVl 149 (795)
|+|+|+++.+.. +| +..|..... +.| +..+..+...-.+.|+.+|.. ....+. ..++-||.+|
T Consensus 3 i~viG~~~~GKS-sl----~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 77 (172)
T cd01862 3 VIILGDSGVGKT-SL----MNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCV 77 (172)
T ss_pred EEEECCCCCCHH-HH----HHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEE
Confidence 899999998886 67 444432211 112 123334444566778999732 233333 3566799999
Q ss_pred EeeeCCCccccccccccC---hHHHHHHHHHHhc---CCCceEEEeccCCc
Q 003796 150 FVASASSFSEESMSYYID---SFGNQCLSVFRSL---GLPSTAVLIRDLPT 194 (795)
Q Consensus 150 l~idas~g~~~~~~~~fe---~eg~e~L~~l~aq---G~P~vigVl~~Ld~ 194 (795)
+++|++.. ..|+ .+-.+++..+... +.|- +.|++..|.
T Consensus 78 ~v~d~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~p~-ilv~nK~Dl 121 (172)
T cd01862 78 LVYDVTNP------KSFESLDSWRDEFLIQASPSDPENFPF-VVLGNKIDL 121 (172)
T ss_pred EEEECCCH------HHHHHHHHHHHHHHHhcCccCCCCceE-EEEEECccc
Confidence 99999853 2233 2333444444322 5564 455677665
No 113
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=92.80 E-value=2 Score=43.08 Aligned_cols=100 Identities=9% Similarity=0.130 Sum_probs=58.8
Q ss_pred EEEEEecCCCccChhhHHHHHHHhhccCCC-----CCcce--EEEecCceeeEEEEeCCCCC--hHHH-HHHHhhhceEE
Q 003796 80 RVIVLFGLSASVNLNSVREDLLRQLSSEGT-----GALSS--TVSSSKYRLRTSVLQAPHGD--LVGC-MEMAKVADLVA 149 (795)
Q Consensus 80 ~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~-----~~g~~--tv~~~r~k~Ritfie~~~~d--l~~~-LD~aKvADlVl 149 (795)
.-|+++|+++.+.+ +| ++.+..... +.++. ++... +.++.++.++ .. ...+ -...+-||.+|
T Consensus 18 ~~i~ivG~~~~GKT-sl----i~~l~~~~~~~~~~t~~~~~~~~~~~--~~~~~~~D~~-G~~~~~~~~~~~~~~ad~ii 89 (184)
T smart00178 18 AKILFLGLDNAGKT-TL----LHMLKNDRLAQHQPTQHPTSEELAIG--NIKFTTFDLG-GHQQARRLWKDYFPEVNGIV 89 (184)
T ss_pred CEEEEECCCCCCHH-HH----HHHHhcCCCcccCCccccceEEEEEC--CEEEEEEECC-CCHHHHHHHHHHhCCCCEEE
Confidence 45789999998886 67 444433211 11332 22222 3578888887 43 2222 34467899999
Q ss_pred EeeeCCCccccccccccChHHHHHHHHHH---hcCCCceEEEeccCCc
Q 003796 150 FVASASSFSEESMSYYIDSFGNQCLSVFR---SLGLPSTAVLIRDLPT 194 (795)
Q Consensus 150 l~idas~g~~~~~~~~fe~eg~e~L~~l~---aqG~P~vigVl~~Ld~ 194 (795)
+|+|++.. ..|+..-.++..+++ ..|.| ++.|++..|.
T Consensus 90 ~vvD~~~~------~~~~~~~~~l~~l~~~~~~~~~p-iliv~NK~Dl 130 (184)
T smart00178 90 YLVDAYDK------ERFAESKRELDALLSDEELATVP-FLILGNKIDA 130 (184)
T ss_pred EEEECCcH------HHHHHHHHHHHHHHcChhhcCCC-EEEEEeCccc
Confidence 99999842 224333334444443 35665 6677888775
No 114
>PRK07560 elongation factor EF-2; Reviewed
Probab=92.66 E-value=0.55 Score=57.81 Aligned_cols=106 Identities=13% Similarity=0.078 Sum_probs=71.0
Q ss_pred CEEEEEecCCCccChhhHHHHHHHhh---ccC--------C--CCC--cceEEEe---------cCceeeEEEEeCCC-C
Q 003796 79 PRVIVLFGLSASVNLNSVREDLLRQL---SSE--------G--TGA--LSSTVSS---------SKYRLRTSVLQAPH-G 133 (795)
Q Consensus 79 P~iV~Vvg~~~~~~~~sl~~~lvk~~---~~~--------~--~~~--g~~tv~~---------~r~k~Ritfie~~~-~ 133 (795)
-+-|+|+|..+.+.. +|+..|+..- .+. + ..+ .-+|+.+ ...+..+.||.||- .
T Consensus 20 iRni~iigh~d~GKT-TL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~ 98 (731)
T PRK07560 20 IRNIGIIAHIDHGKT-TLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHV 98 (731)
T ss_pred ccEEEEEEeCCCCHH-HHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCcc
Confidence 456999999887765 5655555321 000 0 000 1122221 11256789999982 3
Q ss_pred C-hHHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc
Q 003796 134 D-LVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT 194 (795)
Q Consensus 134 d-l~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~ 194 (795)
| ...+..+...||.+|+|+|+..| ++..+..+++.+...|+|. |.+++.+|.
T Consensus 99 df~~~~~~~l~~~D~avlVvda~~g--------~~~~t~~~~~~~~~~~~~~-iv~iNK~D~ 151 (731)
T PRK07560 99 DFGGDVTRAMRAVDGAIVVVDAVEG--------VMPQTETVLRQALRERVKP-VLFINKVDR 151 (731)
T ss_pred ChHHHHHHHHHhcCEEEEEEECCCC--------CCccHHHHHHHHHHcCCCe-EEEEECchh
Confidence 4 35677788999999999999965 7778999999988999996 667777773
No 115
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=92.64 E-value=1.8 Score=41.66 Aligned_cols=100 Identities=11% Similarity=0.117 Sum_probs=56.6
Q ss_pred EEEecCCCccChhhHHHHHHHhhccCC------CCCc----ceEEEecCceeeEEEEeCCCCC-hHHH-HHHHhhhceEE
Q 003796 82 IVLFGLSASVNLNSVREDLLRQLSSEG------TGAL----SSTVSSSKYRLRTSVLQAPHGD-LVGC-MEMAKVADLVA 149 (795)
Q Consensus 82 V~Vvg~~~~~~~~sl~~~lvk~~~~~~------~~~g----~~tv~~~r~k~Ritfie~~~~d-l~~~-LD~aKvADlVl 149 (795)
|+|+|+++++.. +| +..|+... .+.+ +..+..+....++.|+.+|... ...+ --.++-||.+|
T Consensus 3 i~v~G~~~~GKS-sl----i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 77 (161)
T cd01863 3 ILLIGDSGVGKS-SL----LLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVI 77 (161)
T ss_pred EEEECCCCCCHH-HH----HHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEE
Confidence 789999998886 67 33333221 1112 2233344445678888987322 2222 23457799999
Q ss_pred EeeeCCCccccccccccChHHHHHHHHHHhc----CCCceEEEeccCCc
Q 003796 150 FVASASSFSEESMSYYIDSFGNQCLSVFRSL----GLPSTAVLIRDLPT 194 (795)
Q Consensus 150 l~idas~g~~~~~~~~fe~eg~e~L~~l~aq----G~P~vigVl~~Ld~ 194 (795)
+++|++.. ..|+.... +++.+..+ +.| ++.|.+..|.
T Consensus 78 ~v~d~~~~------~s~~~~~~-~~~~i~~~~~~~~~~-~~iv~nK~D~ 118 (161)
T cd01863 78 LVYDVTRR------DTFTNLET-WLNELETYSTNNDIV-KMLVGNKIDK 118 (161)
T ss_pred EEEECCCH------HHHHhHHH-HHHHHHHhCCCCCCc-EEEEEECCcc
Confidence 99998853 23443222 44544443 444 4555677775
No 116
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=92.31 E-value=0.78 Score=42.24 Aligned_cols=94 Identities=16% Similarity=0.163 Sum_probs=56.8
Q ss_pred EEEecCCCccChhhHHHHHHHh-hccCCCCC----cceE--EEecCceeeEEEEeCCCC-C----------hHHHHHHHh
Q 003796 82 IVLFGLSASVNLNSVREDLLRQ-LSSEGTGA----LSST--VSSSKYRLRTSVLQAPHG-D----------LVGCMEMAK 143 (795)
Q Consensus 82 V~Vvg~~~~~~~~sl~~~lvk~-~~~~~~~~----g~~t--v~~~r~k~Ritfie~~~~-d----------l~~~LD~aK 143 (795)
|+|+|+++++.. +|++.|... +...+... .+.. +... ...+.|+..|.- + +...+....
T Consensus 2 V~iiG~~~~GKS-Tlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~--~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~ 78 (116)
T PF01926_consen 2 VAIIGRPNVGKS-TLINALTGKKLAKVSNIPGTTRDPVYGQFEYN--NKKFILVDTPGINDGESQDNDGKEIRKFLEQIS 78 (116)
T ss_dssp EEEEESTTSSHH-HHHHHHHTSTSSEESSSTTSSSSEEEEEEEET--TEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHH-HHHHHHhccccccccccccceeeeeeeeeeec--eeeEEEEeCCCCcccchhhHHHHHHHHHHHHHH
Confidence 789999998886 774444431 10111100 2211 1122 467789988741 1 234677778
Q ss_pred hhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEE
Q 003796 144 VADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAV 187 (795)
Q Consensus 144 vADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vig 187 (795)
-+|++|+++|++. ..+..-.++++.|+ ++-|-++.
T Consensus 79 ~~d~ii~vv~~~~--------~~~~~~~~~~~~l~-~~~~~i~v 113 (116)
T PF01926_consen 79 KSDLIIYVVDASN--------PITEDDKNILRELK-NKKPIILV 113 (116)
T ss_dssp TESEEEEEEETTS--------HSHHHHHHHHHHHH-TTSEEEEE
T ss_pred HCCEEEEEEECCC--------CCCHHHHHHHHHHh-cCCCEEEE
Confidence 8999999999873 23445667888887 66665543
No 117
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=92.30 E-value=0.53 Score=53.21 Aligned_cols=101 Identities=17% Similarity=0.231 Sum_probs=71.8
Q ss_pred eeeEEEEeCCC-CC-hHHHHHHHhhhceEEEeeeCCCc-cccccccccChHHHHHHHHHHhcCCCceEEEeccCCc-chh
Q 003796 122 RLRTSVLQAPH-GD-LVGCMEMAKVADLVAFVASASSF-SEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT-DLK 197 (795)
Q Consensus 122 k~Ritfie~~~-~d-l~~~LD~aKvADlVll~idas~g-~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~-~~K 197 (795)
|.+||++.||- +| +-.||--|..||..||+|||+.| ||-. -+.+-.|.|-+=+++.+|+...|.+++.+|. +|.
T Consensus 84 k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g--~~~~gQtrEH~~La~tlGi~~lIVavNKMD~v~wd 161 (428)
T COG5256 84 KYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAG--FGVGGQTREHAFLARTLGIKQLIVAVNKMDLVSWD 161 (428)
T ss_pred CceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccc--cccCCchhHHHHHHHhcCCceEEEEEEcccccccC
Confidence 57899999974 44 67899999999999999999976 1110 1134578899999999999999999999884 332
Q ss_pred h--hHHHHHHHHhhccc--ccCCCCeeEEeC
Q 003796 198 K--RKDLKKMCISSLTS--EFPEDCKFYAAD 224 (795)
Q Consensus 198 k--~~~~kK~lk~~f~~--ef~~~~Klf~l~ 224 (795)
+ -..++..+.+.+.. +.++..++.++|
T Consensus 162 e~rf~ei~~~v~~l~k~~G~~~~~v~FIPiS 192 (428)
T COG5256 162 EERFEEIVSEVSKLLKMVGYNPKDVPFIPIS 192 (428)
T ss_pred HHHHHHHHHHHHHHHHHcCCCccCCeEEecc
Confidence 2 23466666663333 223345677766
No 118
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=92.23 E-value=1.5 Score=42.21 Aligned_cols=106 Identities=10% Similarity=0.096 Sum_probs=57.9
Q ss_pred EEEEecCCCccChhhHHHHHHHh-hc-cCCCCCc---ceEEEecCceeeEEEEeCCC-CChHHHHH-HHhhhceEEEeee
Q 003796 81 VIVLFGLSASVNLNSVREDLLRQ-LS-SEGTGAL---SSTVSSSKYRLRTSVLQAPH-GDLVGCME-MAKVADLVAFVAS 153 (795)
Q Consensus 81 iV~Vvg~~~~~~~~sl~~~lvk~-~~-~~~~~~g---~~tv~~~r~k~Ritfie~~~-~dl~~~LD-~aKvADlVll~id 153 (795)
-|+|+|.++.+.. +|++.++.. +. .+..+.+ ..++..+..+.++.++..+. ..+.++.. ..+-||.+||++|
T Consensus 3 ki~i~G~~~vGKT-sl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d 81 (163)
T cd04136 3 KVVVLGSGGVGKS-ALTVQFVQGIFVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVYS 81 (163)
T ss_pred EEEEECCCCCCHH-HHHHHHHhCCCCcccCCchhhhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEEE
Confidence 4889999998886 673332321 10 0111111 12233444456778888863 23444443 3577999999999
Q ss_pred CCCccccccccccCh---HHHHHHHHHHhcCCCceEEEeccCCc
Q 003796 154 ASSFSEESMSYYIDS---FGNQCLSVFRSLGLPSTAVLIRDLPT 194 (795)
Q Consensus 154 as~g~~~~~~~~fe~---eg~e~L~~l~aqG~P~vigVl~~Ld~ 194 (795)
.+.. ..|+. +-.++++.....++| ++.|++..|.
T Consensus 82 ~~~~------~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl 118 (163)
T cd04136 82 ITSQ------SSFNDLQDLREQILRVKDTENVP-MVLVGNKCDL 118 (163)
T ss_pred CCCH------HHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccc
Confidence 8742 22432 223333332334666 5567787775
No 119
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=92.22 E-value=1.9 Score=41.53 Aligned_cols=101 Identities=12% Similarity=0.071 Sum_probs=59.8
Q ss_pred EEEecCCCccChhhHHHHHHHhhccCC------CCCc----ceEEEecCceeeEEEEeCCCC-ChHHHH-HHHhhhceEE
Q 003796 82 IVLFGLSASVNLNSVREDLLRQLSSEG------TGAL----SSTVSSSKYRLRTSVLQAPHG-DLVGCM-EMAKVADLVA 149 (795)
Q Consensus 82 V~Vvg~~~~~~~~sl~~~lvk~~~~~~------~~~g----~~tv~~~r~k~Ritfie~~~~-dl~~~L-D~aKvADlVl 149 (795)
|+|+|+++++.. +| +..|.... .+.| ..++......-++.++.++-. ...++. ..++-||.+|
T Consensus 4 i~v~G~~~~GKS-sl----i~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i 78 (163)
T cd01860 4 LVLLGDSSVGKS-SL----VLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAI 78 (163)
T ss_pred EEEECCCCCCHH-HH----HHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEE
Confidence 789999998886 67 44443322 1113 234455544456777777621 122222 2456699999
Q ss_pred EeeeCCCccccccccccChHHHHHHHHHHhcCCCc--eEEEeccCCc
Q 003796 150 FVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPS--TAVLIRDLPT 194 (795)
Q Consensus 150 l~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~--vigVl~~Ld~ 194 (795)
|++|++.. ..|+. ...+|+.++.++-+. ++.|++..|.
T Consensus 79 ~v~d~~~~------~s~~~-~~~~~~~~~~~~~~~~~iivv~nK~D~ 118 (163)
T cd01860 79 VVYDITSE------ESFEK-AKSWVKELQRNASPNIIIALVGNKADL 118 (163)
T ss_pred EEEECcCH------HHHHH-HHHHHHHHHHhCCCCCeEEEEEECccc
Confidence 99999843 23443 346677777776443 3445677774
No 120
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=92.03 E-value=1.8 Score=42.48 Aligned_cols=137 Identities=9% Similarity=0.047 Sum_probs=73.7
Q ss_pred EEEEecCCCccChhhHHHHHHHhhccCCCC-CcceEEEecCceeeEEEEeCCC------CChHHHHHHHhhhceEEEeee
Q 003796 81 VIVLFGLSASVNLNSVREDLLRQLSSEGTG-ALSSTVSSSKYRLRTSVLQAPH------GDLVGCMEMAKVADLVAFVAS 153 (795)
Q Consensus 81 iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~-~g~~tv~~~r~k~Ritfie~~~------~dl~~~LD~aKvADlVll~id 153 (795)
-|+++|.++.+.. +|+ ..+++.... ....++..... .++.+|- .-...|+.+++-||++|+++|
T Consensus 3 ~i~~iG~~~~GKs-tl~----~~l~~~~~~~~~~~~v~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il~v~d 73 (158)
T PRK15467 3 RIAFVGAVGAGKT-TLF----NALQGNYTLARKTQAVEFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLIYVHG 73 (158)
T ss_pred EEEEECCCCCCHH-HHH----HHHcCCCccCccceEEEECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEEEEEe
Confidence 3899999998876 673 334332211 12222222211 1466652 235567888999999999999
Q ss_pred CCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchhhhHHHHHHHHhhcccccCCCCeeEEeCC--HHHHHH
Q 003796 154 ASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKKRKDLKKMCISSLTSEFPEDCKFYAADT--KDELHK 231 (795)
Q Consensus 154 as~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~~~Kk~~~~kK~lk~~f~~ef~~~~Klf~l~~--~~E~~n 231 (795)
++.+ ..+. ...++.+ ..+.| +++|++..|.........++.+++ +.....+|.+|. ...+..
T Consensus 74 ~~~~------~s~~--~~~~~~~--~~~~~-ii~v~nK~Dl~~~~~~~~~~~~~~-----~~~~~p~~~~Sa~~g~gi~~ 137 (158)
T PRK15467 74 ANDP------ESRL--PAGLLDI--GVSKR-QIAVISKTDMPDADVAATRKLLLE-----TGFEEPIFELNSHDPQSVQQ 137 (158)
T ss_pred CCCc------cccc--CHHHHhc--cCCCC-eEEEEEccccCcccHHHHHHHHHH-----cCCCCCEEEEECCCccCHHH
Confidence 9854 1111 1222322 13455 678888887511222223333332 221357888884 344666
Q ss_pred HHHHHhhcccc
Q 003796 232 FLWLFKEQRLT 242 (795)
Q Consensus 232 L~R~Is~~k~r 242 (795)
|...|+.....
T Consensus 138 l~~~l~~~~~~ 148 (158)
T PRK15467 138 LVDYLASLTKQ 148 (158)
T ss_pred HHHHHHHhchh
Confidence 66666554433
No 121
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=91.96 E-value=2.2 Score=41.17 Aligned_cols=105 Identities=10% Similarity=0.089 Sum_probs=59.3
Q ss_pred EEEecCCCccChhhHHHHHHHhh-c-cCCCCC---cceEEEecCceeeEEEEeCCC-CChHHHHH-HHhhhceEEEeeeC
Q 003796 82 IVLFGLSASVNLNSVREDLLRQL-S-SEGTGA---LSSTVSSSKYRLRTSVLQAPH-GDLVGCME-MAKVADLVAFVASA 154 (795)
Q Consensus 82 V~Vvg~~~~~~~~sl~~~lvk~~-~-~~~~~~---g~~tv~~~r~k~Ritfie~~~-~dl~~~LD-~aKvADlVll~ida 154 (795)
|+|+|+++++.. +|++.++..- . .+..+. -..++..+...-++.++..+. ..+..+.. ..+-||.+|+++|+
T Consensus 3 i~v~G~~~~GKT-sli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~ 81 (164)
T smart00173 3 LVVLGSGGVGKS-ALTIQFVQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYSI 81 (164)
T ss_pred EEEECCCCCCHH-HHHHHHHhCcCCcccCCchhhhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEEC
Confidence 789999998876 6733333211 0 011111 122333333356778888863 34555554 57889999999998
Q ss_pred CCccccccccccCh---HHHHHHHHHHhcCCCceEEEeccCCc
Q 003796 155 SSFSEESMSYYIDS---FGNQCLSVFRSLGLPSTAVLIRDLPT 194 (795)
Q Consensus 155 s~g~~~~~~~~fe~---eg~e~L~~l~aqG~P~vigVl~~Ld~ 194 (795)
+.. ..|+. +-..+++.+..+..| ++.|.+..|.
T Consensus 82 ~~~------~s~~~~~~~~~~i~~~~~~~~~p-ii~v~nK~Dl 117 (164)
T smart00173 82 TDR------QSFEEIKKFREQILRVKDRDDVP-IVLVGNKCDL 117 (164)
T ss_pred CCH------HHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccc
Confidence 852 22433 333444444444555 5566788775
No 122
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=91.93 E-value=3.2 Score=41.38 Aligned_cols=102 Identities=12% Similarity=0.117 Sum_probs=59.5
Q ss_pred CEEEEEecCCCccChhhHHHHHHHhhccCCC-----CCcc--eEEEecCceeeEEEEeCCCCCh--HHH-HHHHhhhceE
Q 003796 79 PRVIVLFGLSASVNLNSVREDLLRQLSSEGT-----GALS--STVSSSKYRLRTSVLQAPHGDL--VGC-MEMAKVADLV 148 (795)
Q Consensus 79 P~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~-----~~g~--~tv~~~r~k~Ritfie~~~~dl--~~~-LD~aKvADlV 148 (795)
+.-|+|+|++++++. +| ++.++.... +.++ ..+..+ ..++.++..+ ... ..+ ....+-||.+
T Consensus 19 ~~ki~ilG~~~~GKS-tL----i~~l~~~~~~~~~~T~~~~~~~i~~~--~~~~~l~D~~-G~~~~~~~~~~~~~~ad~i 90 (190)
T cd00879 19 EAKILFLGLDNAGKT-TL----LHMLKDDRLAQHVPTLHPTSEELTIG--NIKFKTFDLG-GHEQARRLWKDYFPEVDGI 90 (190)
T ss_pred CCEEEEECCCCCCHH-HH----HHHHhcCCCcccCCccCcceEEEEEC--CEEEEEEECC-CCHHHHHHHHHHhccCCEE
Confidence 444699999998886 67 444433211 1122 223333 3577888886 432 232 4456889999
Q ss_pred EEeeeCCCccccccccccChHHHHHHHHHHhcCC--CceEEEeccCCc
Q 003796 149 AFVASASSFSEESMSYYIDSFGNQCLSVFRSLGL--PSTAVLIRDLPT 194 (795)
Q Consensus 149 ll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~--P~vigVl~~Ld~ 194 (795)
|+++|++.. ..|+..-..+..+++.... ..++.|++..|.
T Consensus 91 ilV~D~~~~------~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl 132 (190)
T cd00879 91 VFLVDAADP------ERFQESKEELDSLLSDEELANVPFLILGNKIDL 132 (190)
T ss_pred EEEEECCcH------HHHHHHHHHHHHHHcCccccCCCEEEEEeCCCC
Confidence 999999742 2354444455555553332 235666888875
No 123
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=91.91 E-value=2.7 Score=41.45 Aligned_cols=101 Identities=15% Similarity=0.115 Sum_probs=59.2
Q ss_pred EEEEEecCCCccChhhHHHHHHHhhcc-CC----CCCcc--eEEEecCceeeEEEEeCCCCC-hHHHHH-HHhhhceEEE
Q 003796 80 RVIVLFGLSASVNLNSVREDLLRQLSS-EG----TGALS--STVSSSKYRLRTSVLQAPHGD-LVGCME-MAKVADLVAF 150 (795)
Q Consensus 80 ~iV~Vvg~~~~~~~~sl~~~lvk~~~~-~~----~~~g~--~tv~~~r~k~Ritfie~~~~d-l~~~LD-~aKvADlVll 150 (795)
.=|+++|+++.+.. +| +..|+. .. .+.|. .++... +.++.++..+-.+ +..+.. ..+-||.+||
T Consensus 10 ~kv~i~G~~~~GKT-sl----i~~l~~~~~~~~~~t~g~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~ 82 (168)
T cd04149 10 MRILMLGLDAAGKT-TI----LYKLKLGQSVTTIPTVGFNVETVTYK--NVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF 82 (168)
T ss_pred cEEEEECcCCCCHH-HH----HHHHccCCCccccCCcccceEEEEEC--CEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 34889999998886 66 444422 11 11121 122222 4578888876222 334333 3588999999
Q ss_pred eeeCCCccccccccccChHHHHHHHHHHh---cCCCceEEEeccCCc
Q 003796 151 VASASSFSEESMSYYIDSFGNQCLSVFRS---LGLPSTAVLIRDLPT 194 (795)
Q Consensus 151 ~idas~g~~~~~~~~fe~eg~e~L~~l~a---qG~P~vigVl~~Ld~ 194 (795)
|+|++.- ..|+..-.++...+.. ++.| ++.|.++.|.
T Consensus 83 v~D~t~~------~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl 122 (168)
T cd04149 83 VVDSADR------DRIDEARQELHRIINDREMRDAL-LLVFANKQDL 122 (168)
T ss_pred EEeCCch------hhHHHHHHHHHHHhcCHhhcCCc-EEEEEECcCC
Confidence 9999842 2355554555555544 3544 6667888885
No 124
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=91.80 E-value=7 Score=37.94 Aligned_cols=100 Identities=10% Similarity=0.074 Sum_probs=58.7
Q ss_pred EEEecCCCccChhhHHHHHHHhhccCC--CCC----cc----eEEEecCceeeEEEEeCCC-CChHHHHH-HHhhhceEE
Q 003796 82 IVLFGLSASVNLNSVREDLLRQLSSEG--TGA----LS----STVSSSKYRLRTSVLQAPH-GDLVGCME-MAKVADLVA 149 (795)
Q Consensus 82 V~Vvg~~~~~~~~sl~~~lvk~~~~~~--~~~----g~----~tv~~~r~k~Ritfie~~~-~dl~~~LD-~aKvADlVl 149 (795)
|+|+|.++.+.. +| +..|.... ... ++ ..+........+.++.++. ....++.. ..+-||.+|
T Consensus 3 i~vvG~~~vGKT-sl----i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 77 (161)
T cd04124 3 IILLGDSAVGKS-KL----VERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACI 77 (161)
T ss_pred EEEECCCCCCHH-HH----HHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEE
Confidence 789999998886 67 44332211 111 11 1222333455777888763 22344443 478899999
Q ss_pred EeeeCCCccccccccccChHHHHHHHHHHhc--CCCceEEEeccCCc
Q 003796 150 FVASASSFSEESMSYYIDSFGNQCLSVFRSL--GLPSTAVLIRDLPT 194 (795)
Q Consensus 150 l~idas~g~~~~~~~~fe~eg~e~L~~l~aq--G~P~vigVl~~Ld~ 194 (795)
+|+|++.. ..|+. -.+.+..++.. ++ .++.|++..|.
T Consensus 78 ~v~d~~~~------~s~~~-~~~~~~~i~~~~~~~-p~ivv~nK~Dl 116 (161)
T cd04124 78 LVFDVTRK------ITYKN-LSKWYEELREYRPEI-PCIVVANKIDL 116 (161)
T ss_pred EEEECCCH------HHHHH-HHHHHHHHHHhCCCC-cEEEEEECccC
Confidence 99999853 22333 23556666544 44 45677888885
No 125
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=91.76 E-value=2.9 Score=41.09 Aligned_cols=104 Identities=13% Similarity=0.066 Sum_probs=60.2
Q ss_pred EEEecCCCccChhhHHHHHHHh-hccCCCCCcc--eEEEecCceeeEEEEeCCCC-ChHHHH-HHHhhhceEEEeeeCCC
Q 003796 82 IVLFGLSASVNLNSVREDLLRQ-LSSEGTGALS--STVSSSKYRLRTSVLQAPHG-DLVGCM-EMAKVADLVAFVASASS 156 (795)
Q Consensus 82 V~Vvg~~~~~~~~sl~~~lvk~-~~~~~~~~g~--~tv~~~r~k~Ritfie~~~~-dl~~~L-D~aKvADlVll~idas~ 156 (795)
|+++|++++++. +|++.+... +..+..+.|. .++.. .+.++.++.++-. ....+. ...+-||.+|+|+|++.
T Consensus 2 vvlvG~~~~GKT-sl~~~l~~~~~~~~~~T~~~~~~~~~~--~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~ 78 (169)
T cd04158 2 VVTLGLDGAGKT-TILFKLKQDEFMQPIPTIGFNVETVEY--KNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSH 78 (169)
T ss_pred EEEECCCCCCHH-HHHHHHhcCCCCCcCCcCceeEEEEEE--CCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeCCc
Confidence 679999998886 673332221 0111111122 12222 2467888888732 233333 45688999999999984
Q ss_pred ccccccccccChHHHHHHHHHHhcCC--CceEEEeccCCc
Q 003796 157 FSEESMSYYIDSFGNQCLSVFRSLGL--PSTAVLIRDLPT 194 (795)
Q Consensus 157 g~~~~~~~~fe~eg~e~L~~l~aqG~--P~vigVl~~Ld~ 194 (795)
. +.|+..-..+..+++.+++ +.++.|.+..|.
T Consensus 79 ~------~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl 112 (169)
T cd04158 79 R------DRVSEAHSELAKLLTEKELRDALLLIFANKQDV 112 (169)
T ss_pred H------HHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCc
Confidence 2 3466655556666655454 346667788775
No 126
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=91.75 E-value=2.4 Score=40.70 Aligned_cols=137 Identities=7% Similarity=0.062 Sum_probs=71.5
Q ss_pred EEEecCCCccChhhHHHHHHHhhccCCCCC------c----ceEEEec--CceeeEEEEeCCCC-ChHHH-HHHHhhhce
Q 003796 82 IVLFGLSASVNLNSVREDLLRQLSSEGTGA------L----SSTVSSS--KYRLRTSVLQAPHG-DLVGC-MEMAKVADL 147 (795)
Q Consensus 82 V~Vvg~~~~~~~~sl~~~lvk~~~~~~~~~------g----~~tv~~~--r~k~Ritfie~~~~-dl~~~-LD~aKvADl 147 (795)
|+|+|.++++.. +| +..++...... | ..++... ....++.++.+|.. ...++ -...+-||.
T Consensus 3 v~~vG~~~~GKT-sl----~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ 77 (162)
T cd04106 3 VIVVGNGNVGKS-SM----IQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQA 77 (162)
T ss_pred EEEECCCCCCHH-HH----HHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCE
Confidence 899999998886 67 44444322111 1 1222222 33457888888632 23333 345678999
Q ss_pred EEEeeeCCCccccccccccChHHHHHHHHHH--hcCCCceEEEeccCCcchhhh---HHHHHHHHhhcccccCCCCeeEE
Q 003796 148 VAFVASASSFSEESMSYYIDSFGNQCLSVFR--SLGLPSTAVLIRDLPTDLKKR---KDLKKMCISSLTSEFPEDCKFYA 222 (795)
Q Consensus 148 Vll~idas~g~~~~~~~~fe~eg~e~L~~l~--aqG~P~vigVl~~Ld~~~Kk~---~~~kK~lk~~f~~ef~~~~Klf~ 222 (795)
+|+++|++.. +.|+.- ...+..+. ..++| ++.|++..|.. +.+ .+..+.+.+. + +.++|.
T Consensus 78 ~v~v~d~~~~------~s~~~l-~~~~~~~~~~~~~~p-~iiv~nK~Dl~-~~~~v~~~~~~~~~~~----~--~~~~~~ 142 (162)
T cd04106 78 CILVFSTTDR------ESFEAI-ESWKEKVEAECGDIP-MVLVQTKIDLL-DQAVITNEEAEALAKR----L--QLPLFR 142 (162)
T ss_pred EEEEEECCCH------HHHHHH-HHHHHHHHHhCCCCC-EEEEEEChhcc-cccCCCHHHHHHHHHH----c--CCeEEE
Confidence 9999998742 223221 12222222 24777 56667887751 111 1111112211 1 346788
Q ss_pred eCCH--HHHHHHHHHHhh
Q 003796 223 ADTK--DELHKFLWLFKE 238 (795)
Q Consensus 223 l~~~--~E~~nL~R~Is~ 238 (795)
.|.. ..+..|...|+.
T Consensus 143 ~Sa~~~~~v~~l~~~l~~ 160 (162)
T cd04106 143 TSVKDDFNVTELFEYLAE 160 (162)
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 7742 345566666653
No 127
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=91.61 E-value=0.9 Score=55.82 Aligned_cols=106 Identities=11% Similarity=0.038 Sum_probs=71.3
Q ss_pred CEEEEEecCCCccChhhHHHHHHHhh-------------ccCCCCC--cceEEE---------ecCceeeEEEEeCCC-C
Q 003796 79 PRVIVLFGLSASVNLNSVREDLLRQL-------------SSEGTGA--LSSTVS---------SSKYRLRTSVLQAPH-G 133 (795)
Q Consensus 79 P~iV~Vvg~~~~~~~~sl~~~lvk~~-------------~~~~~~~--g~~tv~---------~~r~k~Ritfie~~~-~ 133 (795)
-+-|+|+|..+.++. +|++.|+... ......+ ..+|+. .......+.|+-+|- .
T Consensus 19 irnI~ivGh~~~GKT-TL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~ 97 (720)
T TIGR00490 19 IRNIGIVAHIDHGKT-TLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHV 97 (720)
T ss_pred ccEEEEEEeCCCCHH-HHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCcc
Confidence 367999999887775 6655545321 0000000 112221 222356889999873 2
Q ss_pred C-hHHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc
Q 003796 134 D-LVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT 194 (795)
Q Consensus 134 d-l~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~ 194 (795)
+ ...+..+...||.+|||+|+..| +..++.++++.+...+.|.+ .|++.+|.
T Consensus 98 ~f~~~~~~al~~aD~~llVvda~~g--------~~~~t~~~~~~~~~~~~p~i-vviNKiD~ 150 (720)
T TIGR00490 98 DFGGDVTRAMRAVDGAIVVVCAVEG--------VMPQTETVLRQALKENVKPV-LFINKVDR 150 (720)
T ss_pred ccHHHHHHHHHhcCEEEEEEecCCC--------CCccHHHHHHHHHHcCCCEE-EEEEChhc
Confidence 3 34678889999999999999865 67788999999989999975 67777774
No 128
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=91.61 E-value=3.6 Score=46.26 Aligned_cols=103 Identities=15% Similarity=0.169 Sum_probs=60.0
Q ss_pred CCCEEEEEecCCCccChhhHHHHHHHhhccCCCC--C------cceE--EEecCceeeEEEEeCCCCC-----------h
Q 003796 77 SPPRVIVLFGLSASVNLNSVREDLLRQLSSEGTG--A------LSST--VSSSKYRLRTSVLQAPHGD-----------L 135 (795)
Q Consensus 77 ~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~--~------g~~t--v~~~r~k~Ritfie~~~~d-----------l 135 (795)
+.| .|+++|.++.+.. || ++.+++.+.. . .+++ +..+. ...++|+..+ .- +
T Consensus 188 ~~~-~ValvG~~NvGKS-SL----ln~L~~~~~~v~~~~~tT~d~~~~~i~~~~-~~~i~l~DT~-G~~~~l~~~lie~f 259 (351)
T TIGR03156 188 DVP-TVALVGYTNAGKS-TL----FNALTGADVYAADQLFATLDPTTRRLDLPD-GGEVLLTDTV-GFIRDLPHELVAAF 259 (351)
T ss_pred CCc-EEEEECCCCCCHH-HH----HHHHhCCceeeccCCccccCCEEEEEEeCC-CceEEEEecC-cccccCCHHHHHHH
Confidence 445 4889999998886 77 5555543311 1 2222 22221 2467777665 32 3
Q ss_pred HHHHHHHhhhceEEEeeeCCCccccccccccCh--HHHHHHHHHHhcCCCceEEEeccCCc
Q 003796 136 VGCMEMAKVADLVAFVASASSFSEESMSYYIDS--FGNQCLSVFRSLGLPSTAVLIRDLPT 194 (795)
Q Consensus 136 ~~~LD~aKvADlVll~idas~g~~~~~~~~fe~--eg~e~L~~l~aqG~P~vigVl~~Ld~ 194 (795)
.+++..++-||+||+|+|++.. ..++. ...++|..+...+.| ++.|++..|.
T Consensus 260 ~~tle~~~~ADlil~VvD~s~~------~~~~~~~~~~~~L~~l~~~~~p-iIlV~NK~Dl 313 (351)
T TIGR03156 260 RATLEEVREADLLLHVVDASDP------DREEQIEAVEKVLEELGAEDIP-QLLVYNKIDL 313 (351)
T ss_pred HHHHHHHHhCCEEEEEEECCCC------chHHHHHHHHHHHHHhccCCCC-EEEEEEeecC
Confidence 4566778889999999999853 11111 112444444433444 6778888885
No 129
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=91.58 E-value=2.7 Score=40.98 Aligned_cols=104 Identities=13% Similarity=0.073 Sum_probs=60.3
Q ss_pred EEEecCCCccChhhHHHHHH-HhhccCCCCCcc--eEEEecCceeeEEEEeCCCCC-hHHHHHH-HhhhceEEEeeeCCC
Q 003796 82 IVLFGLSASVNLNSVREDLL-RQLSSEGTGALS--STVSSSKYRLRTSVLQAPHGD-LVGCMEM-AKVADLVAFVASASS 156 (795)
Q Consensus 82 V~Vvg~~~~~~~~sl~~~lv-k~~~~~~~~~g~--~tv~~~r~k~Ritfie~~~~d-l~~~LD~-aKvADlVll~idas~ 156 (795)
|+++|.++++.. +|+..+. ..+..+..+.|. .++... ...+.++.++-.+ +..+... .+-||.+|||+|++.
T Consensus 3 v~~~G~~~~GKT-sli~~l~~~~~~~~~pt~g~~~~~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~ 79 (159)
T cd04150 3 ILMVGLDAAGKT-TILYKLKLGEIVTTIPTIGFNVETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND 79 (159)
T ss_pred EEEECCCCCCHH-HHHHHHhcCCCcccCCCCCcceEEEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCC
Confidence 789999998886 6632221 111111111121 122222 3567888876322 4445444 688999999999984
Q ss_pred ccccccccccChHHHHHHHHHHhcCC--CceEEEeccCCc
Q 003796 157 FSEESMSYYIDSFGNQCLSVFRSLGL--PSTAVLIRDLPT 194 (795)
Q Consensus 157 g~~~~~~~~fe~eg~e~L~~l~aqG~--P~vigVl~~Ld~ 194 (795)
- ..|+..-.++.++++.+.+ +.++.|.+..|.
T Consensus 80 ~------~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl 113 (159)
T cd04150 80 R------ERIGEAREELQRMLNEDELRDAVLLVFANKQDL 113 (159)
T ss_pred H------HHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCC
Confidence 2 3466665666666655433 446667788775
No 130
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=91.43 E-value=0.78 Score=57.35 Aligned_cols=63 Identities=8% Similarity=0.034 Sum_probs=51.1
Q ss_pred eeeEEEEeCCC-CC-hHHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCC
Q 003796 122 RLRTSVLQAPH-GD-LVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLP 193 (795)
Q Consensus 122 k~Ritfie~~~-~d-l~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld 193 (795)
..+++||.+|- .| +..++-++.+||.+|||+||..| +...|..+|+.+..+|+|.++.+ +.+|
T Consensus 97 ~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~G--------v~~~t~~~~~~~~~~~~p~i~~i-NK~D 161 (843)
T PLN00116 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEG--------VCVQTETVLRQALGERIRPVLTV-NKMD 161 (843)
T ss_pred ceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCC--------CcccHHHHHHHHHHCCCCEEEEE-ECCc
Confidence 45789999982 24 45677788999999999999965 78889999999999999997654 5555
No 131
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=91.40 E-value=3.3 Score=39.81 Aligned_cols=106 Identities=8% Similarity=0.034 Sum_probs=58.7
Q ss_pred EEEEecCCCccChhhHHHHHHHhhc--cCCCCCcc---eEEEecCceeeEEEEeCCC-CChHHHH-HHHhhhceEEEeee
Q 003796 81 VIVLFGLSASVNLNSVREDLLRQLS--SEGTGALS---STVSSSKYRLRTSVLQAPH-GDLVGCM-EMAKVADLVAFVAS 153 (795)
Q Consensus 81 iV~Vvg~~~~~~~~sl~~~lvk~~~--~~~~~~g~---~tv~~~r~k~Ritfie~~~-~dl~~~L-D~aKvADlVll~id 153 (795)
=|+|+|.++.+.. +|++.++.... .+..+.+. ..+.+.....++.++..|. .++..+. ...+-||.+|+|+|
T Consensus 4 ki~i~G~~~~GKt-sl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d 82 (164)
T cd04145 4 KLVVVGGGGVGKS-ALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLVFS 82 (164)
T ss_pred EEEEECCCCCcHH-HHHHHHHhCCCCcccCCCccceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEEEE
Confidence 3899999998876 66333332211 11111111 1122333345788888873 3566666 44788999999999
Q ss_pred CCCccccccccccChHH---HHHHHHHHhcCCCceEEEeccCCc
Q 003796 154 ASSFSEESMSYYIDSFG---NQCLSVFRSLGLPSTAVLIRDLPT 194 (795)
Q Consensus 154 as~g~~~~~~~~fe~eg---~e~L~~l~aqG~P~vigVl~~Ld~ 194 (795)
++.. ..|+..- .++++.....++| ++.|++..|.
T Consensus 83 ~~~~------~s~~~~~~~~~~~~~~~~~~~~p-iiiv~NK~Dl 119 (164)
T cd04145 83 VTDR------GSFEEVDKFHTQILRVKDRDEFP-MILVGNKADL 119 (164)
T ss_pred CCCH------HHHHHHHHHHHHHHHHhCCCCCC-EEEEeeCccc
Confidence 9853 2243322 2333333334566 4556788775
No 132
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=91.38 E-value=3.9 Score=41.55 Aligned_cols=103 Identities=11% Similarity=0.006 Sum_probs=58.3
Q ss_pred EEEEEecCCCccChhhHHHHHHHhhccCC------CCCc----ceEEEecCceeeEEEEeCCCCC-hHHH-HHHHhhhce
Q 003796 80 RVIVLFGLSASVNLNSVREDLLRQLSSEG------TGAL----SSTVSSSKYRLRTSVLQAPHGD-LVGC-MEMAKVADL 147 (795)
Q Consensus 80 ~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~------~~~g----~~tv~~~r~k~Ritfie~~~~d-l~~~-LD~aKvADl 147 (795)
+=|+|+|+++.+.. +| +..|.... .+.| ..++..+..+.++.++.++... ...+ --.++-||.
T Consensus 7 ~kivvvG~~~vGKT-sl----i~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~ 81 (199)
T cd04110 7 FKLLIIGDSGVGKS-SL----LLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHG 81 (199)
T ss_pred eEEEEECCCCCCHH-HH----HHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcE
Confidence 34889999998886 66 44442211 1112 2344444455688899987322 2222 224566999
Q ss_pred EEEeeeCCCccccccccccChHHHHHHHHHHhc-CCCceEEEeccCCc
Q 003796 148 VAFVASASSFSEESMSYYIDSFGNQCLSVFRSL-GLPSTAVLIRDLPT 194 (795)
Q Consensus 148 Vll~idas~g~~~~~~~~fe~eg~e~L~~l~aq-G~P~vigVl~~Ld~ 194 (795)
+|||+|++.. ..|+.- ...|+.+..+ +-..++.|.+..|.
T Consensus 82 iilv~D~~~~------~s~~~~-~~~~~~i~~~~~~~piivVgNK~Dl 122 (199)
T cd04110 82 VIVVYDVTNG------ESFVNV-KRWLQEIEQNCDDVCKVLVGNKNDD 122 (199)
T ss_pred EEEEEECCCH------HHHHHH-HHHHHHHHHhCCCCCEEEEEECccc
Confidence 9999999742 224322 2344444443 33445666777775
No 133
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=91.33 E-value=4 Score=40.80 Aligned_cols=101 Identities=8% Similarity=0.023 Sum_probs=57.2
Q ss_pred EEEecCCCccChhhHHHHHHHhhccCCC------CCc----ceEEEecCceeeEEEEeCCCCChHH--HHHHHhhhceEE
Q 003796 82 IVLFGLSASVNLNSVREDLLRQLSSEGT------GAL----SSTVSSSKYRLRTSVLQAPHGDLVG--CMEMAKVADLVA 149 (795)
Q Consensus 82 V~Vvg~~~~~~~~sl~~~lvk~~~~~~~------~~g----~~tv~~~r~k~Ritfie~~~~dl~~--~LD~aKvADlVl 149 (795)
|+|+|.++.+.. +| +..|..... +.| ..++..+...-++.|+.++...-.. ....++=||.+|
T Consensus 3 i~v~G~~~vGKS-sl----i~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~ii 77 (188)
T cd04125 3 VVIIGDYGVGKS-SL----LKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYL 77 (188)
T ss_pred EEEECCCCCCHH-HH----HHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEE
Confidence 789999998876 67 444432211 112 2233333334567888887333222 234566799999
Q ss_pred EeeeCCCccccccccccChHHHHHHHHHHhcC--CCceEEEeccCCc
Q 003796 150 FVASASSFSEESMSYYIDSFGNQCLSVFRSLG--LPSTAVLIRDLPT 194 (795)
Q Consensus 150 l~idas~g~~~~~~~~fe~eg~e~L~~l~aqG--~P~vigVl~~Ld~ 194 (795)
||+|.+.. ..|+.- .++|..++... -+.++.|.++.|.
T Consensus 78 lv~d~~~~------~s~~~i-~~~~~~i~~~~~~~~~~ivv~nK~Dl 117 (188)
T cd04125 78 LVYDVTDQ------ESFENL-KFWINEINRYARENVIKVIVANKSDL 117 (188)
T ss_pred EEEECcCH------HHHHHH-HHHHHHHHHhCCCCCeEEEEEECCCC
Confidence 99999853 234332 22444444321 1346777888885
No 134
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=91.29 E-value=3 Score=40.30 Aligned_cols=101 Identities=10% Similarity=0.032 Sum_probs=57.9
Q ss_pred EEEecCCCccChhhHHHHHHHhhccCCCC------Cc----ceEEEecCceeeEEEEeCCC-CChHHHHH-HHhhhceEE
Q 003796 82 IVLFGLSASVNLNSVREDLLRQLSSEGTG------AL----SSTVSSSKYRLRTSVLQAPH-GDLVGCME-MAKVADLVA 149 (795)
Q Consensus 82 V~Vvg~~~~~~~~sl~~~lvk~~~~~~~~------~g----~~tv~~~r~k~Ritfie~~~-~dl~~~LD-~aKvADlVl 149 (795)
|+|+|+++++.. +| +..|...... .| ..++..+...-++.++..+. ..+..+.. ..+-||.+|
T Consensus 6 i~vvG~~~~GKS-sl----i~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i 80 (165)
T cd01868 6 IVLIGDSGVGKS-NL----LSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGAL 80 (165)
T ss_pred EEEECCCCCCHH-HH----HHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEE
Confidence 889999998886 67 5554332211 12 23344444445788888863 12334433 347799999
Q ss_pred EeeeCCCccccccccccChHHHHHHHHHHhcCC--CceEEEeccCCc
Q 003796 150 FVASASSFSEESMSYYIDSFGNQCLSVFRSLGL--PSTAVLIRDLPT 194 (795)
Q Consensus 150 l~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~--P~vigVl~~Ld~ 194 (795)
+|+|++.. ..|+. -.+.|..++.+.. +.++.|.+..|.
T Consensus 81 ~v~d~~~~------~s~~~-~~~~~~~~~~~~~~~~pi~vv~nK~Dl 120 (165)
T cd01868 81 LVYDITKK------QTFEN-VERWLKELRDHADSNIVIMLVGNKSDL 120 (165)
T ss_pred EEEECcCH------HHHHH-HHHHHHHHHHhCCCCCeEEEEEECccc
Confidence 99999842 22322 2234444444321 236667888885
No 135
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=91.20 E-value=3.1 Score=39.62 Aligned_cols=104 Identities=11% Similarity=0.109 Sum_probs=54.6
Q ss_pred EEEecCCCccChhhHHHHHHHhh-ccCCCCC-----cceEEEecCceeeEEEEeCCCCC-hHHHHHH-HhhhceEEEeee
Q 003796 82 IVLFGLSASVNLNSVREDLLRQL-SSEGTGA-----LSSTVSSSKYRLRTSVLQAPHGD-LVGCMEM-AKVADLVAFVAS 153 (795)
Q Consensus 82 V~Vvg~~~~~~~~sl~~~lvk~~-~~~~~~~-----g~~tv~~~r~k~Ritfie~~~~d-l~~~LD~-aKvADlVll~id 153 (795)
|+|+|+++++.. +|++.++..- ....... ...++.....+..+.++.++... ...+... .+-||.+|+++|
T Consensus 3 i~i~G~~~~GKS-tli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 81 (162)
T cd04123 3 VVLLGEGRVGKT-SLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVYD 81 (162)
T ss_pred EEEECCCCCCHH-HHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEEE
Confidence 789999998875 6733333221 1111111 11123333334678889997322 3333332 466999999999
Q ss_pred CCCccccccccccChHHHHHHHHHHh-c--CCCceEEEeccCCc
Q 003796 154 ASSFSEESMSYYIDSFGNQCLSVFRS-L--GLPSTAVLIRDLPT 194 (795)
Q Consensus 154 as~g~~~~~~~~fe~eg~e~L~~l~a-q--G~P~vigVl~~Ld~ 194 (795)
.+.+ ..|+... .++..++. . ++ .++.|+++.|.
T Consensus 82 ~~~~------~s~~~~~-~~~~~i~~~~~~~~-piiiv~nK~D~ 117 (162)
T cd04123 82 ITDA------DSFQKVK-KWIKELKQMRGNNI-SLVIVGNKIDL 117 (162)
T ss_pred CCCH------HHHHHHH-HHHHHHHHhCCCCC-eEEEEEECccc
Confidence 8853 2232221 22222222 2 33 36666788775
No 136
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=91.13 E-value=2.6 Score=41.18 Aligned_cols=101 Identities=8% Similarity=0.058 Sum_probs=57.9
Q ss_pred EEEecCCCccChhhHHHHHHHhhccCCC-----CC----cceEEEecCceeeEEEEeCCCCCh-HHHHH-HHhhhceEEE
Q 003796 82 IVLFGLSASVNLNSVREDLLRQLSSEGT-----GA----LSSTVSSSKYRLRTSVLQAPHGDL-VGCME-MAKVADLVAF 150 (795)
Q Consensus 82 V~Vvg~~~~~~~~sl~~~lvk~~~~~~~-----~~----g~~tv~~~r~k~Ritfie~~~~dl-~~~LD-~aKvADlVll 150 (795)
|+|+|+++.+.. +| +..|+.... .. ...++..+..+-+++++.++..+- ..+-+ ..+-||.+|+
T Consensus 3 i~i~G~~~~GKT-sl----~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~il 77 (174)
T cd04135 3 CVVVGDGAVGKT-CL----LMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLI 77 (174)
T ss_pred EEEECCCCCCHH-HH----HHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEE
Confidence 789999998886 67 444432221 11 122344454455688899873222 22221 2456899999
Q ss_pred eeeCCCccccccccccChHHHHHHHHHHhc--CCCceEEEeccCCc
Q 003796 151 VASASSFSEESMSYYIDSFGNQCLSVFRSL--GLPSTAVLIRDLPT 194 (795)
Q Consensus 151 ~idas~g~~~~~~~~fe~eg~e~L~~l~aq--G~P~vigVl~~Ld~ 194 (795)
++|.+.. ..|+.-...++..+... +.| ++.|.++.|.
T Consensus 78 v~~~~~~------~s~~~~~~~~~~~l~~~~~~~p-iivv~nK~Dl 116 (174)
T cd04135 78 CFSVVNP------ASFQNVKEEWVPELKEYAPNVP-YLLVGTQIDL 116 (174)
T ss_pred EEECCCH------HHHHHHHHHHHHHHHhhCCCCC-EEEEeEchhh
Confidence 9998742 33554444455555543 443 3556788774
No 137
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=91.03 E-value=1 Score=41.21 Aligned_cols=73 Identities=19% Similarity=0.059 Sum_probs=40.6
Q ss_pred EEEecCCCccChhhHHHHHHHhhcc-CC--CCC-----cceEEEecCceeeEEEEeCCCCCh-HHH--HHHHhhhceEEE
Q 003796 82 IVLFGLSASVNLNSVREDLLRQLSS-EG--TGA-----LSSTVSSSKYRLRTSVLQAPHGDL-VGC--MEMAKVADLVAF 150 (795)
Q Consensus 82 V~Vvg~~~~~~~~sl~~~lvk~~~~-~~--~~~-----g~~tv~~~r~k~Ritfie~~~~dl-~~~--LD~aKvADlVll 150 (795)
|+|+|.+++++. +|++.|+..... .. ... +..+.....-.+.+.|.+++ ... ... -.+.+-||.+||
T Consensus 2 I~V~G~~g~GKT-sLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-g~~~~~~~~~~~~~~~d~~il 79 (119)
T PF08477_consen 2 IVVLGDSGVGKT-SLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFG-GQEEFYSQHQFFLKKADAVIL 79 (119)
T ss_dssp EEEECSTTSSHH-HHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEES-SSHCHHCTSHHHHHHSCEEEE
T ss_pred EEEECcCCCCHH-HHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecC-ccceecccccchhhcCcEEEE
Confidence 789999998886 673333332211 00 011 11122223234568889987 332 111 113788999999
Q ss_pred eeeCCC
Q 003796 151 VASASS 156 (795)
Q Consensus 151 ~idas~ 156 (795)
|+|.+.
T Consensus 80 v~D~s~ 85 (119)
T PF08477_consen 80 VYDLSD 85 (119)
T ss_dssp EEECCG
T ss_pred EEcCCC
Confidence 999984
No 138
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=90.95 E-value=1.8 Score=42.08 Aligned_cols=105 Identities=11% Similarity=0.077 Sum_probs=59.9
Q ss_pred EEEecCCCccChhhHHHHHHHh-hc-cCCCCCc----ceEEEecCceeeEEEEeCCCCC-hHH-HHHHHhhhceEEEeee
Q 003796 82 IVLFGLSASVNLNSVREDLLRQ-LS-SEGTGAL----SSTVSSSKYRLRTSVLQAPHGD-LVG-CMEMAKVADLVAFVAS 153 (795)
Q Consensus 82 V~Vvg~~~~~~~~sl~~~lvk~-~~-~~~~~~g----~~tv~~~r~k~Ritfie~~~~d-l~~-~LD~aKvADlVll~id 153 (795)
|+|+|+++++.. +|++.++.. +. .+..+.| ..++..+..+-+++++.+|... +.. ....++-||.+|+++|
T Consensus 6 v~vvG~~~~GKT-sli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~llv~d 84 (165)
T cd01864 6 IILIGDSNVGKT-CVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAIIAYD 84 (165)
T ss_pred EEEECCCCCCHH-HHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEEEE
Confidence 789999998886 673332221 10 1111112 2234444444588899998322 222 2345677999999999
Q ss_pred CCCccccccccccChHHHHHHHHHHhcCCC--ceEEEeccCCc
Q 003796 154 ASSFSEESMSYYIDSFGNQCLSVFRSLGLP--STAVLIRDLPT 194 (795)
Q Consensus 154 as~g~~~~~~~~fe~eg~e~L~~l~aqG~P--~vigVl~~Ld~ 194 (795)
++.. ..|+. -...|..++.++-+ .++.|.+..|.
T Consensus 85 ~~~~------~s~~~-~~~~~~~i~~~~~~~~p~ivv~nK~Dl 120 (165)
T cd01864 85 ITRR------SSFES-VPHWIEEVEKYGASNVVLLLIGNKCDL 120 (165)
T ss_pred CcCH------HHHHh-HHHHHHHHHHhCCCCCcEEEEEECccc
Confidence 9853 23432 24566666655432 25666788775
No 139
>PRK04213 GTP-binding protein; Provisional
Probab=90.94 E-value=8.2 Score=38.89 Aligned_cols=107 Identities=19% Similarity=0.222 Sum_probs=60.0
Q ss_pred CEEEEEecCCCccChhhHHHHHHHhhccCCCCC---cceEEEecCc-eeeEEEEeCCCC--C-----------hHH----
Q 003796 79 PRVIVLFGLSASVNLNSVREDLLRQLSSEGTGA---LSSTVSSSKY-RLRTSVLQAPHG--D-----------LVG---- 137 (795)
Q Consensus 79 P~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~~---g~~tv~~~r~-k~Ritfie~~~~--d-----------l~~---- 137 (795)
..-|+|+|.++.+.+ +| +..++...... ..+|.....+ -..++++..| . . +.+
T Consensus 9 ~~~i~i~G~~~~GKS-sL----in~l~~~~~~~~~~~~~t~~~~~~~~~~~~l~Dt~-G~~~~~~~~~~~~~~~~~~~~~ 82 (201)
T PRK04213 9 KPEIVFVGRSNVGKS-TL----VRELTGKKVRVGKRPGVTRKPNHYDWGDFILTDLP-GFGFMSGVPKEVQEKIKDEIVR 82 (201)
T ss_pred CCEEEEECCCCCCHH-HH----HHHHhCCCCccCCCCceeeCceEEeecceEEEeCC-ccccccccCHHHHHHHHHHHHH
Confidence 445899999998886 67 44444322111 1112211101 1257788776 4 1 111
Q ss_pred HH-HHHhhhceEEEeeeCCCcccccccccc-----ChHHHHHHHHHHhcCCCceEEEeccCCc
Q 003796 138 CM-EMAKVADLVAFVASASSFSEESMSYYI-----DSFGNQCLSVFRSLGLPSTAVLIRDLPT 194 (795)
Q Consensus 138 ~L-D~aKvADlVll~idas~g~~~~~~~~f-----e~eg~e~L~~l~aqG~P~vigVl~~Ld~ 194 (795)
.+ ..+..+|+|++|+|++....-. ..+ -....+++..++..|.|- +.|++..|.
T Consensus 83 ~~~~~~~~~~~vi~v~d~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~p~-iiv~NK~Dl 142 (201)
T PRK04213 83 YIEDNADRILAAVLVVDGKSFIEII--ERWEGRGEIPIDVEMFDFLRELGIPP-IVAVNKMDK 142 (201)
T ss_pred HHHhhhhhheEEEEEEeCccccccc--cccccCCCcHHHHHHHHHHHHcCCCe-EEEEECccc
Confidence 12 3567789999999997420000 001 012367788888788885 668888885
No 140
>PRK00093 GTP-binding protein Der; Reviewed
Probab=90.94 E-value=1.7 Score=49.83 Aligned_cols=98 Identities=9% Similarity=0.134 Sum_probs=62.8
Q ss_pred EEEEecCCCccChhhHHHHHHHhhccCCC---CC--cc------eEEEecCceeeEEEEeCCC-CC----h----H-HHH
Q 003796 81 VIVLFGLSASVNLNSVREDLLRQLSSEGT---GA--LS------STVSSSKYRLRTSVLQAPH-GD----L----V-GCM 139 (795)
Q Consensus 81 iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~---~~--g~------~tv~~~r~k~Ritfie~~~-~d----l----~-~~L 139 (795)
.|+|+|.++.+.. +| +..+++... .. |. ..+... ...+.++.+|- .+ + . ..+
T Consensus 3 ~I~ivG~~~vGKS-tL----~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~--~~~~~liDT~G~~~~~~~~~~~~~~~~~ 75 (435)
T PRK00093 3 VVAIVGRPNVGKS-TL----FNRLTGKRDAIVADTPGVTRDRIYGEAEWL--GREFILIDTGGIEPDDDGFEKQIREQAE 75 (435)
T ss_pred EEEEECCCCCCHH-HH----HHHHhCCCceeeCCCCCCcccceEEEEEEC--CcEEEEEECCCCCCcchhHHHHHHHHHH
Confidence 4889999998775 67 444433221 11 11 112222 25788888873 22 1 1 134
Q ss_pred HHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc
Q 003796 140 EMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT 194 (795)
Q Consensus 140 D~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~ 194 (795)
.+..-||+||+++|++.+ +.....++...|+..|.| ++.|++..|.
T Consensus 76 ~~~~~ad~il~vvd~~~~--------~~~~~~~~~~~l~~~~~p-iilv~NK~D~ 121 (435)
T PRK00093 76 LAIEEADVILFVVDGRAG--------LTPADEEIAKILRKSNKP-VILVVNKVDG 121 (435)
T ss_pred HHHHhCCEEEEEEECCCC--------CCHHHHHHHHHHHHcCCc-EEEEEECccC
Confidence 567889999999999854 555667788888888887 5567888885
No 141
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=90.88 E-value=3.5 Score=40.00 Aligned_cols=101 Identities=9% Similarity=0.054 Sum_probs=56.5
Q ss_pred EEEEecCCCccChhhHHHHHHHhhccCCC--C----Ccc----eEEEecCceeeEEEEeCCCCC-hHHHH-HHHhhhceE
Q 003796 81 VIVLFGLSASVNLNSVREDLLRQLSSEGT--G----ALS----STVSSSKYRLRTSVLQAPHGD-LVGCM-EMAKVADLV 148 (795)
Q Consensus 81 iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~--~----~g~----~tv~~~r~k~Ritfie~~~~d-l~~~L-D~aKvADlV 148 (795)
=|+|+|+++.+.. +| +..+..... . .|+ .++..+....++.++.++... ...+. ..++-||.+
T Consensus 4 ki~i~G~~~vGKS-sl----i~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~i 78 (166)
T cd01869 4 KLLLIGDSGVGKS-CL----LLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 78 (166)
T ss_pred EEEEECCCCCCHH-HH----HHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEE
Confidence 3789999998886 67 444432211 1 121 123333345678889887322 33332 456779999
Q ss_pred EEeeeCCCccccccccccChHHHHHHHHHHh---cCCCceEEEeccCCc
Q 003796 149 AFVASASSFSEESMSYYIDSFGNQCLSVFRS---LGLPSTAVLIRDLPT 194 (795)
Q Consensus 149 ll~idas~g~~~~~~~~fe~eg~e~L~~l~a---qG~P~vigVl~~Ld~ 194 (795)
|+++|++.. +.|+.- .+++..++. .++| ++.|.+..|.
T Consensus 79 i~v~d~~~~------~s~~~l-~~~~~~~~~~~~~~~~-~iiv~nK~Dl 119 (166)
T cd01869 79 IIVYDVTDQ------ESFNNV-KQWLQEIDRYASENVN-KLLVGNKCDL 119 (166)
T ss_pred EEEEECcCH------HHHHhH-HHHHHHHHHhCCCCCc-EEEEEEChhc
Confidence 999999842 223322 234444443 3555 4556677774
No 142
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=90.63 E-value=4 Score=41.75 Aligned_cols=101 Identities=13% Similarity=0.059 Sum_probs=54.0
Q ss_pred EEEecCCCccChhhHHHHHHHhhccCCC------CCc----ceEEEecCceeeEEEEeCCCC------ChHH----HHHH
Q 003796 82 IVLFGLSASVNLNSVREDLLRQLSSEGT------GAL----SSTVSSSKYRLRTSVLQAPHG------DLVG----CMEM 141 (795)
Q Consensus 82 V~Vvg~~~~~~~~sl~~~lvk~~~~~~~------~~g----~~tv~~~r~k~Ritfie~~~~------dl~~----~LD~ 141 (795)
|+|+|.++.++. +| +..|...+. +.+ ..++..+..+.++.++.++.- .... ...+
T Consensus 3 I~ivG~~~vGKT-sL----i~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~ 77 (198)
T cd04142 3 VAVLGAPGVGKT-AI----VRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRG 77 (198)
T ss_pred EEEECCCCCcHH-HH----HHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhh
Confidence 789999998886 67 333332211 111 112333444567888887520 1111 1223
Q ss_pred HhhhceEEEeeeCCCccccccccccCh---HHHHHHHHHH--hcCCCceEEEeccCCc
Q 003796 142 AKVADLVAFVASASSFSEESMSYYIDS---FGNQCLSVFR--SLGLPSTAVLIRDLPT 194 (795)
Q Consensus 142 aKvADlVll~idas~g~~~~~~~~fe~---eg~e~L~~l~--aqG~P~vigVl~~Ld~ 194 (795)
.+-||.+|||+|++.. ..|+. +..++++... ..+.| ++.|.+..|.
T Consensus 78 ~~~ad~iilv~D~~~~------~S~~~~~~~~~~i~~~~~~~~~~~p-iiivgNK~Dl 128 (198)
T cd04142 78 LRNSRAFILVYDICSP------DSFHYVKLLRQQILETRPAGNKEPP-IVVVGNKRDQ 128 (198)
T ss_pred hccCCEEEEEEECCCH------HHHHHHHHHHHHHHHhcccCCCCCC-EEEEEECccc
Confidence 5789999999999853 22332 2223333321 24444 4555677775
No 143
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=90.59 E-value=3.7 Score=39.25 Aligned_cols=101 Identities=12% Similarity=0.109 Sum_probs=57.9
Q ss_pred EEEecCCCccChhhHHHHHHHhhccCCC------CCcc---eEEEecCceeeEEEEeCCC-CChHHHH-HHHhhhceEEE
Q 003796 82 IVLFGLSASVNLNSVREDLLRQLSSEGT------GALS---STVSSSKYRLRTSVLQAPH-GDLVGCM-EMAKVADLVAF 150 (795)
Q Consensus 82 V~Vvg~~~~~~~~sl~~~lvk~~~~~~~------~~g~---~tv~~~r~k~Ritfie~~~-~dl~~~L-D~aKvADlVll 150 (795)
|+++|+++.+.. +| ++.++.... +.+. ..+.......++.++..+. .+...+. .+.+.+|.+++
T Consensus 3 i~~~G~~~~GKT-sl----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 77 (164)
T cd04139 3 VIVVGAGGVGKS-AL----TLQFMYDEFVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLL 77 (164)
T ss_pred EEEECCCCCCHH-HH----HHHHHhCCCccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEE
Confidence 789999998876 67 443332111 1111 1122333456788887763 1333333 36688999999
Q ss_pred eeeCCCccccccccccC---hHHHHHHHHHHhcCCCceEEEeccCCc
Q 003796 151 VASASSFSEESMSYYID---SFGNQCLSVFRSLGLPSTAVLIRDLPT 194 (795)
Q Consensus 151 ~idas~g~~~~~~~~fe---~eg~e~L~~l~aqG~P~vigVl~~Ld~ 194 (795)
++|.+.. ..|+ .+...++.+...+++| ++.|++..|.
T Consensus 78 v~d~~~~------~s~~~~~~~~~~~~~~~~~~~~p-iiiv~NK~D~ 117 (164)
T cd04139 78 VFSITDM------ESFTATAEFREQILRVKDDDNVP-LLLVGNKCDL 117 (164)
T ss_pred EEECCCH------HHHHHHHHHHHHHHHhcCCCCCC-EEEEEEcccc
Confidence 9998742 2233 3444444444446777 5666777775
No 144
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=90.51 E-value=1.5 Score=44.02 Aligned_cols=106 Identities=13% Similarity=0.052 Sum_probs=62.8
Q ss_pred EEEEEecCCCccChhhHHHHHHH-hhccCCCCCcce--EEEecCceeeEEEEeCCCC-ChHHHHHH-HhhhceEEEeeeC
Q 003796 80 RVIVLFGLSASVNLNSVREDLLR-QLSSEGTGALSS--TVSSSKYRLRTSVLQAPHG-DLVGCMEM-AKVADLVAFVASA 154 (795)
Q Consensus 80 ~iV~Vvg~~~~~~~~sl~~~lvk-~~~~~~~~~g~~--tv~~~r~k~Ritfie~~~~-dl~~~LD~-aKvADlVll~ida 154 (795)
+=|+++|+++.+.. +|+..+.. .+..+..+.|.. ++... +-.+.++.++-. .+..+.+. .+-||.+|+|+|+
T Consensus 18 ~kv~lvG~~~vGKT-sli~~~~~~~~~~~~~T~~~~~~~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v~D~ 94 (182)
T PTZ00133 18 VRILMVGLDAAGKT-TILYKLKLGEVVTTIPTIGFNVETVEYK--NLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVVDS 94 (182)
T ss_pred cEEEEEcCCCCCHH-HHHHHHhcCCccccCCccccceEEEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeC
Confidence 34899999998886 66333221 111111111221 12222 357888888732 24444443 6889999999999
Q ss_pred CCccccccccccChHHHHHHHHHHhcCC--CceEEEeccCCc
Q 003796 155 SSFSEESMSYYIDSFGNQCLSVFRSLGL--PSTAVLIRDLPT 194 (795)
Q Consensus 155 s~g~~~~~~~~fe~eg~e~L~~l~aqG~--P~vigVl~~Ld~ 194 (795)
+.- ..|+..-.++.+.++.+-+ +.++.|.++.|.
T Consensus 95 t~~------~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl 130 (182)
T PTZ00133 95 NDR------ERIGDAREELERMLSEDELRDAVLLVFANKQDL 130 (182)
T ss_pred CCH------HHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCC
Confidence 742 3466666677777766433 456777888885
No 145
>PRK09866 hypothetical protein; Provisional
Probab=90.51 E-value=1.6 Score=52.44 Aligned_cols=93 Identities=11% Similarity=0.114 Sum_probs=63.6
Q ss_pred eeEEEEeCCC-----CC-hH-HHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCC-CceEEEeccCCc
Q 003796 123 LRTSVLQAPH-----GD-LV-GCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGL-PSTAVLIRDLPT 194 (795)
Q Consensus 123 ~Ritfie~~~-----~d-l~-~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~-P~vigVl~~Ld~ 194 (795)
..+.|+--|- .. +. .|.++.+=||+||||+|+..+ +...-.++++.|+..|- ..++.|++.+|.
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~--------~s~~DeeIlk~Lkk~~K~~PVILVVNKIDl 301 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQL--------KSISDEEVREAILAVGQSVPLYVLVNKFDQ 301 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCC--------CChhHHHHHHHHHhcCCCCCEEEEEEcccC
Confidence 4566766542 12 33 488999999999999999853 45555788999988884 247888898886
Q ss_pred chhh-----hHHHHHHHHhhcccccCCCCeeEEeCC
Q 003796 195 DLKK-----RKDLKKMCISSLTSEFPEDCKFYAADT 225 (795)
Q Consensus 195 ~~Kk-----~~~~kK~lk~~f~~ef~~~~Klf~l~~ 225 (795)
.+ ...+++.++..+..+...-+++|++|.
T Consensus 302 --~dreeddkE~Lle~V~~~L~q~~i~f~eIfPVSA 335 (741)
T PRK09866 302 --QDRNSDDADQVRALISGTLMKGCITPQQIFPVSS 335 (741)
T ss_pred --CCcccchHHHHHHHHHHHHHhcCCCCceEEEEeC
Confidence 22 223455555444444445789999994
No 146
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=90.40 E-value=3.7 Score=37.52 Aligned_cols=98 Identities=13% Similarity=0.083 Sum_probs=54.5
Q ss_pred EecCCCccChhhHHHHHHHhhccCCC--CC--------cceEEEecCceeeEEEEeCCCCCh---HHHHHHHhhhceEEE
Q 003796 84 LFGLSASVNLNSVREDLLRQLSSEGT--GA--------LSSTVSSSKYRLRTSVLQAPHGDL---VGCMEMAKVADLVAF 150 (795)
Q Consensus 84 Vvg~~~~~~~~sl~~~lvk~~~~~~~--~~--------g~~tv~~~r~k~Ritfie~~~~dl---~~~LD~aKvADlVll 150 (795)
|+|+++++.. +| ++.++.... .. ..+.+........++++.+| ... .......+-+|.+++
T Consensus 1 iiG~~~~GKS-tl----~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~-g~~~~~~~~~~~~~~~~~~i~ 74 (157)
T cd00882 1 VVGDSGVGKT-SL----LNRLLGGEFVPEEYETTIIDFYSKTIEVDGKKVKLQIWDTA-GQERFRSLRRLYYRGADGIIL 74 (157)
T ss_pred CCCcCCCcHH-HH----HHHHHhCCcCCcccccchhheeeEEEEECCEEEEEEEEecC-ChHHHHhHHHHHhcCCCEEEE
Confidence 5788888775 67 444433222 11 12222222235778899987 322 122346788999999
Q ss_pred eeeCCCccccccccccChHHH---HHHHHHHhcCCCceEEEeccCCc
Q 003796 151 VASASSFSEESMSYYIDSFGN---QCLSVFRSLGLPSTAVLIRDLPT 194 (795)
Q Consensus 151 ~idas~g~~~~~~~~fe~eg~---e~L~~l~aqG~P~vigVl~~Ld~ 194 (795)
++|++.+ ..++.... ..+......+.| ++.|+++.|.
T Consensus 75 v~d~~~~------~~~~~~~~~~~~~~~~~~~~~~~-~ivv~nk~D~ 114 (157)
T cd00882 75 VYDVTDR------ESFENVKEWLLLILINKEGENIP-IILVGNKIDL 114 (157)
T ss_pred EEECcCH------HHHHHHHHHHHHHHHhhccCCCc-EEEEEecccc
Confidence 9999954 12222222 233444444544 5667788775
No 147
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=90.05 E-value=3.9 Score=39.60 Aligned_cols=103 Identities=12% Similarity=0.052 Sum_probs=60.1
Q ss_pred EEEEecCCCccChhhHHHHHHHhhccCCC-----CC----cceEEEecCceeeEEEEeCCCCC-hHHHHH-HHhhhceEE
Q 003796 81 VIVLFGLSASVNLNSVREDLLRQLSSEGT-----GA----LSSTVSSSKYRLRTSVLQAPHGD-LVGCME-MAKVADLVA 149 (795)
Q Consensus 81 iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~-----~~----g~~tv~~~r~k~Ritfie~~~~d-l~~~LD-~aKvADlVl 149 (795)
-|+|+|.++++.. +| ++.|+.... .. -..++..+.....++|+.+|... ...+.. ..+-||.+|
T Consensus 2 ki~i~G~~~~GKS-sl----i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i 76 (171)
T cd00157 2 KIVVVGDGAVGKT-CL----LISYTTGKFPTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFL 76 (171)
T ss_pred EEEEECCCCCCHH-HH----HHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEE
Confidence 3789999998886 77 444433321 11 12223333345678899887322 112211 236699999
Q ss_pred EeeeCCCccccccccccChHHHHHHHHHHhcCC-CceEEEeccCCc
Q 003796 150 FVASASSFSEESMSYYIDSFGNQCLSVFRSLGL-PSTAVLIRDLPT 194 (795)
Q Consensus 150 l~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~-P~vigVl~~Ld~ 194 (795)
+++|++.. ..|+....+++..+..... ..++.|+++.|.
T Consensus 77 ~v~d~~~~------~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl 116 (171)
T cd00157 77 ICFSVDSP------SSFENVKTKWIPEIRHYCPNVPIILVGTKIDL 116 (171)
T ss_pred EEEECCCH------HHHHHHHHHHHHHHHhhCCCCCEEEEEccHHh
Confidence 99998742 3355555566776665542 335666777774
No 148
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=89.96 E-value=5.6 Score=40.36 Aligned_cols=144 Identities=15% Similarity=0.130 Sum_probs=77.2
Q ss_pred EEEecCCCccChhhHHHHHHHhhccCCCCC-----cceEEEec-----CceeeEEEEeCCC-CCh-------H-HHHHHH
Q 003796 82 IVLFGLSASVNLNSVREDLLRQLSSEGTGA-----LSSTVSSS-----KYRLRTSVLQAPH-GDL-------V-GCMEMA 142 (795)
Q Consensus 82 V~Vvg~~~~~~~~sl~~~lvk~~~~~~~~~-----g~~tv~~~-----r~k~Ritfie~~~-~dl-------~-~~LD~a 142 (795)
|+++|.++++.. ++++.|+ +..... .+.|..+. -..+++++|..|- .|. . .+..++
T Consensus 3 i~lvG~~g~GKS-sl~N~il----g~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~ 77 (196)
T cd01852 3 LVLVGKTGAGKS-ATGNTIL----GREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCL 77 (196)
T ss_pred EEEECCCCCCHH-HHHHHhh----CCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHH
Confidence 889999998875 6644434 222110 11221111 0136899999873 122 1 233333
Q ss_pred hh----hceEEEeeeCCCccccccccccChHHHHHHHHHHhc-C---CCceEEEeccCCc-chhhhHH----HHHHHHhh
Q 003796 143 KV----ADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSL-G---LPSTAVLIRDLPT-DLKKRKD----LKKMCISS 209 (795)
Q Consensus 143 Kv----ADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aq-G---~P~vigVl~~Ld~-~~Kk~~~----~kK~lk~~ 209 (795)
.. +|+||||+++.. |..+-.++|..|+.. | +..+|.|+|+-|. ......+ ..+.|+..
T Consensus 78 ~~~~~g~~~illVi~~~~---------~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l 148 (196)
T cd01852 78 SLSAPGPHAFLLVVPLGR---------FTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRL 148 (196)
T ss_pred HhcCCCCEEEEEEEECCC---------cCHHHHHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHH
Confidence 32 699999999873 555556667766654 3 5678888998774 1011111 11222222
Q ss_pred cccccCCCCeeEEeC-------CHHHHHHHHHHHhhcccc
Q 003796 210 LTSEFPEDCKFYAAD-------TKDELHKFLWLFKEQRLT 242 (795)
Q Consensus 210 f~~ef~~~~Klf~l~-------~~~E~~nL~R~Is~~k~r 242 (795)
+.. + +...+.++ ....+..|+..|-.|-..
T Consensus 149 ~~~--c-~~r~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~ 185 (196)
T cd01852 149 LEK--C-GGRYVAFNNKAKGEEQEQQVKELLAKVESMVKE 185 (196)
T ss_pred HHH--h-CCeEEEEeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence 222 1 23333333 356788888888776653
No 149
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=89.83 E-value=4.1 Score=39.09 Aligned_cols=101 Identities=12% Similarity=0.084 Sum_probs=57.7
Q ss_pred EEEecCCCccChhhHHHHHHHhhccCCC------CC----cceEEEecCceeeEEEEeCCCCC-hHHHH-HHHhhhceEE
Q 003796 82 IVLFGLSASVNLNSVREDLLRQLSSEGT------GA----LSSTVSSSKYRLRTSVLQAPHGD-LVGCM-EMAKVADLVA 149 (795)
Q Consensus 82 V~Vvg~~~~~~~~sl~~~lvk~~~~~~~------~~----g~~tv~~~r~k~Ritfie~~~~d-l~~~L-D~aKvADlVl 149 (795)
|+|+|.++.+.. +| +..|+.... +. +...+.......++.|+.++-.+ ...+. ...+-||.+|
T Consensus 3 i~~vG~~~vGKT-sl----i~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 77 (168)
T cd04119 3 VISMGNSGVGKS-CI----IKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVL 77 (168)
T ss_pred EEEECCCCCCHH-HH----HHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEE
Confidence 789999998886 67 444433221 11 22334444456788899987322 23333 2457799999
Q ss_pred EeeeCCCccccccccccChHHHHHHHHHHhcC-------CCceEEEeccCCc
Q 003796 150 FVASASSFSEESMSYYIDSFGNQCLSVFRSLG-------LPSTAVLIRDLPT 194 (795)
Q Consensus 150 l~idas~g~~~~~~~~fe~eg~e~L~~l~aqG-------~P~vigVl~~Ld~ 194 (795)
+++|.+.. ..|+. -.+.+..++... -+.++.|.+..|.
T Consensus 78 lv~D~~~~------~s~~~-~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 122 (168)
T cd04119 78 LVYDVTDR------QSFEA-LDSWLKEMKQEGGPHGNMENIVVVVCANKIDL 122 (168)
T ss_pred EEEECCCH------HHHHh-HHHHHHHHHHhccccccCCCceEEEEEEchhc
Confidence 99998842 22332 223344333332 1456777777774
No 150
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=89.80 E-value=3.6 Score=45.96 Aligned_cols=98 Identities=9% Similarity=0.146 Sum_probs=56.0
Q ss_pred EEEecCCCccChhhHHHHHHHhhccCCCC-------C-cceE--EEecCceeeEEEEeCCCCC---------h-HHHHHH
Q 003796 82 IVLFGLSASVNLNSVREDLLRQLSSEGTG-------A-LSST--VSSSKYRLRTSVLQAPHGD---------L-VGCMEM 141 (795)
Q Consensus 82 V~Vvg~~~~~~~~sl~~~lvk~~~~~~~~-------~-g~~t--v~~~r~k~Ritfie~~~~d---------l-~~~LD~ 141 (795)
|++||+|..+.+ +| +..++..... . .|.. +... ..++|+++..| .- | ...|..
T Consensus 161 VglVG~PNaGKS-TL----ln~ls~a~~~va~ypfTT~~p~~G~v~~~-~~~~~~i~D~P-Gli~ga~~~~gLg~~flrh 233 (335)
T PRK12299 161 VGLVGLPNAGKS-TL----ISAVSAAKPKIADYPFTTLHPNLGVVRVD-DYKSFVIADIP-GLIEGASEGAGLGHRFLKH 233 (335)
T ss_pred EEEEcCCCCCHH-HH----HHHHHcCCCccCCCCCceeCceEEEEEeC-CCcEEEEEeCC-CccCCCCccccHHHHHHHH
Confidence 899999998875 77 5555543211 1 2221 1121 13578888887 32 2 245566
Q ss_pred HhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhc-----CCCceEEEeccCCc
Q 003796 142 AKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSL-----GLPSTAVLIRDLPT 194 (795)
Q Consensus 142 aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aq-----G~P~vigVl~~Ld~ 194 (795)
..-||++|+|+|++.. ..++.. ..+++.|+.. .. .++.|++..|.
T Consensus 234 ie~a~vlI~ViD~s~~------~s~e~~-~~~~~EL~~~~~~L~~k-p~IIV~NKiDL 283 (335)
T PRK12299 234 IERTRLLLHLVDIEAV------DPVEDY-KTIRNELEKYSPELADK-PRILVLNKIDL 283 (335)
T ss_pred hhhcCEEEEEEcCCCC------CCHHHH-HHHHHHHHHhhhhcccC-CeEEEEECccc
Confidence 6679999999999842 112111 2333444432 33 35667888775
No 151
>PRK11058 GTPase HflX; Provisional
Probab=89.68 E-value=4.8 Score=46.47 Aligned_cols=105 Identities=12% Similarity=0.186 Sum_probs=61.2
Q ss_pred CCCCEEEEEecCCCccChhhHHHHHHHhhccCCCC--C------cceE--EEecCceeeEEEEeCCC--CC--------h
Q 003796 76 ASPPRVIVLFGLSASVNLNSVREDLLRQLSSEGTG--A------LSST--VSSSKYRLRTSVLQAPH--GD--------L 135 (795)
Q Consensus 76 ~~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~--~------g~~t--v~~~r~k~Ritfie~~~--~d--------l 135 (795)
.+.|. |+|+|.++.+.+ || ++.|+..+.. . .+.+ +..+. ...+.++..+- ++ +
T Consensus 195 ~~~p~-ValVG~~NaGKS-SL----lN~Lt~~~~~v~~~~~tTld~~~~~i~l~~-~~~~~l~DTaG~~r~lp~~lve~f 267 (426)
T PRK11058 195 ADVPT-VSLVGYTNAGKS-TL----FNRITEARVYAADQLFATLDPTLRRIDVAD-VGETVLADTVGFIRHLPHDLVAAF 267 (426)
T ss_pred cCCCE-EEEECCCCCCHH-HH----HHHHhCCceeeccCCCCCcCCceEEEEeCC-CCeEEEEecCcccccCCHHHHHHH
Confidence 35566 789999998886 77 5555443211 1 2221 22222 12555655541 11 4
Q ss_pred HHHHHHHhhhceEEEeeeCCCccccccccccCh--HHHHHHHHHHhcCCCceEEEeccCCc
Q 003796 136 VGCMEMAKVADLVAFVASASSFSEESMSYYIDS--FGNQCLSVFRSLGLPSTAVLIRDLPT 194 (795)
Q Consensus 136 ~~~LD~aKvADlVll~idas~g~~~~~~~~fe~--eg~e~L~~l~aqG~P~vigVl~~Ld~ 194 (795)
.+++..++-||++|+|+|++.. ..++. ...++|..+...+.| ++.|++..|.
T Consensus 268 ~~tl~~~~~ADlIL~VvDaS~~------~~~e~l~~v~~iL~el~~~~~p-vIiV~NKiDL 321 (426)
T PRK11058 268 KATLQETRQATLLLHVVDAADV------RVQENIEAVNTVLEEIDAHEIP-TLLVMNKIDM 321 (426)
T ss_pred HHHHHHhhcCCEEEEEEeCCCc------cHHHHHHHHHHHHHHhccCCCC-EEEEEEcccC
Confidence 5566778889999999999853 11111 123556665555555 5678888885
No 152
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=89.65 E-value=5.7 Score=38.10 Aligned_cols=99 Identities=14% Similarity=0.165 Sum_probs=58.1
Q ss_pred EEEecCCCccChhhHHHHHHHhhccCCCCC-----c--ceEEEecCceeeEEEEeCCCC-ChHHHHH-HHhhhceEEEee
Q 003796 82 IVLFGLSASVNLNSVREDLLRQLSSEGTGA-----L--SSTVSSSKYRLRTSVLQAPHG-DLVGCME-MAKVADLVAFVA 152 (795)
Q Consensus 82 V~Vvg~~~~~~~~sl~~~lvk~~~~~~~~~-----g--~~tv~~~r~k~Ritfie~~~~-dl~~~LD-~aKvADlVll~i 152 (795)
|+|+|+++++.. +| +..++...... | ..++... ...+.++.+|-. ...++.. +.+-||.+|+|+
T Consensus 2 i~iiG~~~~GKs-sl----i~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 74 (158)
T cd00878 2 ILILGLDGAGKT-TI----LYKLKLGEVVTTIPTIGFNVETVEYK--NVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVV 74 (158)
T ss_pred EEEEcCCCCCHH-HH----HHHHhcCCCCCCCCCcCcceEEEEEC--CEEEEEEECCCChhhHHHHHHHhccCCEEEEEE
Confidence 789999998886 67 44443322111 2 2222222 357888888731 2333433 448899999999
Q ss_pred eCCCccccccccccChHHHHHHHHHHh---cCCCceEEEeccCCc
Q 003796 153 SASSFSEESMSYYIDSFGNQCLSVFRS---LGLPSTAVLIRDLPT 194 (795)
Q Consensus 153 das~g~~~~~~~~fe~eg~e~L~~l~a---qG~P~vigVl~~Ld~ 194 (795)
|++.+ ..|+..-..+..+++. .+.| ++.|+++.|.
T Consensus 75 D~~~~------~~~~~~~~~~~~~~~~~~~~~~p-iiiv~nK~D~ 112 (158)
T cd00878 75 DSSDR------ERIEEAKEELHKLLNEEELKGVP-LLIFANKQDL 112 (158)
T ss_pred ECCCH------HHHHHHHHHHHHHHhCcccCCCc-EEEEeeccCC
Confidence 99853 2355444445555553 3443 4555888885
No 153
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=89.58 E-value=4.1 Score=41.83 Aligned_cols=102 Identities=15% Similarity=0.184 Sum_probs=55.6
Q ss_pred EEEecCCCccChhhHHHHHHHhhccCCCC-C------cceEEEec--CceeeEEEEeCCC-CChHH-HHHHHhhh-ceEE
Q 003796 82 IVLFGLSASVNLNSVREDLLRQLSSEGTG-A------LSSTVSSS--KYRLRTSVLQAPH-GDLVG-CMEMAKVA-DLVA 149 (795)
Q Consensus 82 V~Vvg~~~~~~~~sl~~~lvk~~~~~~~~-~------g~~tv~~~--r~k~Ritfie~~~-~dl~~-~LD~aKvA-DlVl 149 (795)
|+++|+++++.. +| +..|+..... . ...++... ....++.++.+|- ..+.. +....+-+ +.||
T Consensus 3 vll~G~~~sGKT-sL----~~~l~~~~~~~t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV 77 (203)
T cd04105 3 VLLLGPSDSGKT-AL----FTKLTTGKYRSTVTSIEPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIV 77 (203)
T ss_pred EEEEcCCCCCHH-HH----HHHHhcCCCCCccCcEeecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEE
Confidence 789999998887 66 4444332211 1 11122211 2245788898873 23433 34556677 9999
Q ss_pred EeeeCCCccccccccccCh---HHHHHHHHHHh--cCCCceEEEeccCCc
Q 003796 150 FVASASSFSEESMSYYIDS---FGNQCLSVFRS--LGLPSTAVLIRDLPT 194 (795)
Q Consensus 150 l~idas~g~~~~~~~~fe~---eg~e~L~~l~a--qG~P~vigVl~~Ld~ 194 (795)
+|+|++... ..+.. +-+++|+.++. .|. .++.|.+..|.
T Consensus 78 ~VvD~~~~~-----~~~~~~~~~l~~il~~~~~~~~~~-pvliv~NK~Dl 121 (203)
T cd04105 78 FVVDSATFQ-----KNLKDVAEFLYDILTDLEKVKNKI-PVLIACNKQDL 121 (203)
T ss_pred EEEECccch-----hHHHHHHHHHHHHHHHHhhccCCC-CEEEEecchhh
Confidence 999998530 01222 22334444333 254 45566777664
No 154
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=89.53 E-value=6.6 Score=38.24 Aligned_cols=101 Identities=19% Similarity=0.283 Sum_probs=59.8
Q ss_pred CEEEEEecCCCccChhhHHHHHHHhhccCCC-----CCcce--EEEecCceeeEEEEeCCCCC--hHHH-HHHHhhhceE
Q 003796 79 PRVIVLFGLSASVNLNSVREDLLRQLSSEGT-----GALSS--TVSSSKYRLRTSVLQAPHGD--LVGC-MEMAKVADLV 148 (795)
Q Consensus 79 P~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~-----~~g~~--tv~~~r~k~Ritfie~~~~d--l~~~-LD~aKvADlV 148 (795)
++-|+|+|++++++. +| ++.+++... +.|.. .+... ...+.++..+ .. +..+ ....+-||.+
T Consensus 14 ~~~v~i~G~~g~GKS-tL----l~~l~~~~~~~~~~t~g~~~~~i~~~--~~~~~~~D~~-G~~~~~~~~~~~~~~~~~i 85 (173)
T cd04155 14 EPRILILGLDNAGKT-TI----LKQLASEDISHITPTQGFNIKTVQSD--GFKLNVWDIG-GQRAIRPYWRNYFENTDCL 85 (173)
T ss_pred ccEEEEEccCCCCHH-HH----HHHHhcCCCcccCCCCCcceEEEEEC--CEEEEEEECC-CCHHHHHHHHHHhcCCCEE
Confidence 566999999999886 67 555544321 12311 22222 3577888876 43 3333 3445789999
Q ss_pred EEeeeCCCccccccccccChHHHHHHHHHH---hcCCCceEEEeccCCc
Q 003796 149 AFVASASSFSEESMSYYIDSFGNQCLSVFR---SLGLPSTAVLIRDLPT 194 (795)
Q Consensus 149 ll~idas~g~~~~~~~~fe~eg~e~L~~l~---aqG~P~vigVl~~Ld~ 194 (795)
|+++|++.. ..|+.....+...++ ..+.| ++.|++..|.
T Consensus 86 i~v~D~~~~------~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~ 127 (173)
T cd04155 86 IYVIDSADK------KRLEEAGAELVELLEEEKLAGVP-VLVFANKQDL 127 (173)
T ss_pred EEEEeCCCH------HHHHHHHHHHHHHHhChhhcCCC-EEEEEECCCC
Confidence 999999842 224443444444433 34555 6667787775
No 155
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=89.50 E-value=2.6 Score=39.86 Aligned_cols=96 Identities=17% Similarity=0.181 Sum_probs=57.8
Q ss_pred EEEEecCCCccChhhHHHHHHHhhccCCC---CC--c----c--eEEEecCceeeEEEEeCCC-CCh---------HHHH
Q 003796 81 VIVLFGLSASVNLNSVREDLLRQLSSEGT---GA--L----S--STVSSSKYRLRTSVLQAPH-GDL---------VGCM 139 (795)
Q Consensus 81 iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~---~~--g----~--~tv~~~r~k~Ritfie~~~-~dl---------~~~L 139 (795)
.|+++|+++++.. ++ +..++.... .. + . ..+... ..+++++..|- .+. ..+.
T Consensus 3 ~i~l~G~~~~GKs-tl----i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~DtpG~~~~~~~~~~~~~~~~~ 75 (157)
T cd04164 3 KVVIVGKPNVGKS-SL----LNALAGRDRAIVSDIAGTTRDVIEESIDIG--GIPVRLIDTAGIRETEDEIEKIGIERAR 75 (157)
T ss_pred EEEEECCCCCCHH-HH----HHHHHCCceEeccCCCCCccceEEEEEEeC--CEEEEEEECCCcCCCcchHHHHHHHHHH
Confidence 5899999998886 67 444443321 01 1 1 112222 35788888872 122 2345
Q ss_pred HHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc
Q 003796 140 EMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT 194 (795)
Q Consensus 140 D~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~ 194 (795)
...+-||++++++|++.. ++.+.+..++...-..++.|+++.|.
T Consensus 76 ~~~~~~~~~v~v~d~~~~-----------~~~~~~~~~~~~~~~~vi~v~nK~D~ 119 (157)
T cd04164 76 EAIEEADLVLFVIDASRG-----------LDEEDLEILELPADKPIIVVLNKSDL 119 (157)
T ss_pred HHHhhCCEEEEEEECCCC-----------CCHHHHHHHHhhcCCCEEEEEEchhc
Confidence 667789999999999842 12333334443444667888998885
No 156
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=89.24 E-value=5 Score=40.86 Aligned_cols=132 Identities=14% Similarity=0.175 Sum_probs=72.6
Q ss_pred CEEEEEecCCCccChhhHHHHHHHhhccCCC---CC---cc--eEEEecCc----eeeEEEEeCCC-CC----hHHHHHH
Q 003796 79 PRVIVLFGLSASVNLNSVREDLLRQLSSEGT---GA---LS--STVSSSKY----RLRTSVLQAPH-GD----LVGCMEM 141 (795)
Q Consensus 79 P~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~---~~---g~--~tv~~~r~----k~Ritfie~~~-~d----l~~~LD~ 141 (795)
|.-|+|+|.++.+.. +| ++.+++... .. |. +|.....+ ...++++..|- ++ ....+..
T Consensus 1 ~~kI~i~G~~g~GKS-SL----in~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~ 75 (197)
T cd04104 1 PLNIAVTGESGAGKS-SF----INALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPDDYLEE 75 (197)
T ss_pred CeEEEEECCCCCCHH-HH----HHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHHHHHHH
Confidence 556899999998886 77 444433221 11 21 12111111 13678888762 11 2333333
Q ss_pred H--hhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc---chh-------hhHHHHHHHHhh
Q 003796 142 A--KVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT---DLK-------KRKDLKKMCISS 209 (795)
Q Consensus 142 a--KvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~---~~K-------k~~~~kK~lk~~ 209 (795)
. .-+|++|++.+.. |...-..++..|+..|. .++.|++..|. +.. ++.++...++.+
T Consensus 76 ~~~~~~d~~l~v~~~~----------~~~~d~~~~~~l~~~~~-~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~ 144 (197)
T cd04104 76 MKFSEYDFFIIISSTR----------FSSNDVKLAKAIQCMGK-KFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDN 144 (197)
T ss_pred hCccCcCEEEEEeCCC----------CCHHHHHHHHHHHHhCC-CEEEEEecccchhhhhhccccccccHHHHHHHHHHH
Confidence 2 2368888886655 55556777888888875 45778887774 110 123444444544
Q ss_pred ccccc----CCCCeeEEeCCH
Q 003796 210 LTSEF----PEDCKFYAADTK 226 (795)
Q Consensus 210 f~~ef----~~~~Klf~l~~~ 226 (795)
+...+ .....+|-+|..
T Consensus 145 ~~~~~~~~~~~~p~v~~vS~~ 165 (197)
T cd04104 145 CLENLQEAGVSEPPVFLVSNF 165 (197)
T ss_pred HHHHHHHcCCCCCCEEEEeCC
Confidence 44433 234577777764
No 157
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=88.91 E-value=9.7 Score=37.37 Aligned_cols=101 Identities=14% Similarity=0.187 Sum_probs=58.9
Q ss_pred EEEEEecCCCccChhhHHHHHHHhhccCCCCC-----c--ceEEEecCceeeEEEEeCCCCC-hHHH-HHHHhhhceEEE
Q 003796 80 RVIVLFGLSASVNLNSVREDLLRQLSSEGTGA-----L--SSTVSSSKYRLRTSVLQAPHGD-LVGC-MEMAKVADLVAF 150 (795)
Q Consensus 80 ~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~~-----g--~~tv~~~r~k~Ritfie~~~~d-l~~~-LD~aKvADlVll 150 (795)
.-|+|+|+++++.. +| +..|....... | ..++... ..++.++..+-.. +.++ -....-||.+|+
T Consensus 15 ~kv~ivG~~~~GKT-sL----~~~l~~~~~~~~~~t~g~~~~~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~ 87 (173)
T cd04154 15 MRILILGLDNAGKT-TI----LKKLLGEDIDTISPTLGFQIKTLEYE--GYKLNIWDVGGQKTLRPYWRNYFESTDALIW 87 (173)
T ss_pred cEEEEECCCCCCHH-HH----HHHHccCCCCCcCCccccceEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence 45779999998886 67 44443222211 3 1223333 3578889887322 3333 334667999999
Q ss_pred eeeCCCccccccccccChHHHHHHHHHH---hcCCCceEEEeccCCc
Q 003796 151 VASASSFSEESMSYYIDSFGNQCLSVFR---SLGLPSTAVLIRDLPT 194 (795)
Q Consensus 151 ~idas~g~~~~~~~~fe~eg~e~L~~l~---aqG~P~vigVl~~Ld~ 194 (795)
++|++.. ..|+.....+..+++ ..+ +.++.|+++.|.
T Consensus 88 v~d~~~~------~s~~~~~~~~~~~~~~~~~~~-~p~iiv~nK~Dl 127 (173)
T cd04154 88 VVDSSDR------LRLDDCKRELKELLQEERLAG-ATLLILANKQDL 127 (173)
T ss_pred EEECCCH------HHHHHHHHHHHHHHhChhhcC-CCEEEEEECccc
Confidence 9999853 234443334444443 245 446677888885
No 158
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=88.90 E-value=2.6 Score=41.62 Aligned_cols=101 Identities=11% Similarity=0.075 Sum_probs=55.0
Q ss_pred EEEEecCCCccChhhHHHHHHHhhccCCCC-------Ccc----eEEEecCceeeEEEEeCCCCC-hHHHHH-HHhhhce
Q 003796 81 VIVLFGLSASVNLNSVREDLLRQLSSEGTG-------ALS----STVSSSKYRLRTSVLQAPHGD-LVGCME-MAKVADL 147 (795)
Q Consensus 81 iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~-------~g~----~tv~~~r~k~Ritfie~~~~d-l~~~LD-~aKvADl 147 (795)
=|+|+|.++.+.. +| +..|...... .|. .++........+.+.++.... ...+-. ..+-||+
T Consensus 6 kv~~vG~~~vGKT-sl----i~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~ 80 (169)
T cd01892 6 LCFVLGAKGSGKS-AL----LRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDV 80 (169)
T ss_pred EEEEECCCCCcHH-HH----HHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCE
Confidence 3899999998886 67 4444332211 121 233344444566666665221 222222 2477999
Q ss_pred EEEeeeCCCccccccccccChHHHHHHHHHHhc-CCCceEEEeccCCc
Q 003796 148 VAFVASASSFSEESMSYYIDSFGNQCLSVFRSL-GLPSTAVLIRDLPT 194 (795)
Q Consensus 148 Vll~idas~g~~~~~~~~fe~eg~e~L~~l~aq-G~P~vigVl~~Ld~ 194 (795)
+|||+|++.. ..|+. -.+++..++.. +.| ++.|++..|.
T Consensus 81 ~llv~d~~~~------~s~~~-~~~~~~~~~~~~~~p-~iiv~NK~Dl 120 (169)
T cd01892 81 ACLVYDSSDP------KSFSY-CAEVYKKYFMLGEIP-CLFVAAKADL 120 (169)
T ss_pred EEEEEeCCCH------HHHHH-HHHHHHHhccCCCCe-EEEEEEcccc
Confidence 9999999742 12321 12444433222 444 6777888885
No 159
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=88.88 E-value=2.6 Score=51.87 Aligned_cols=101 Identities=11% Similarity=0.151 Sum_probs=63.6
Q ss_pred EEEEEecCCCccChhhHHHHHHHhhccCCC-----CCcceE----EEecCceeeEEEEeCCCCC-----h-----HHHHH
Q 003796 80 RVIVLFGLSASVNLNSVREDLLRQLSSEGT-----GALSST----VSSSKYRLRTSVLQAPHGD-----L-----VGCME 140 (795)
Q Consensus 80 ~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~-----~~g~~t----v~~~r~k~Ritfie~~~~d-----l-----~~~LD 140 (795)
..|+|+|.++.+.. +| ++.+++... ..|... ....--...+.|+.++--+ + ..+..
T Consensus 276 ~~V~IvG~~nvGKS-SL----~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~ 350 (712)
T PRK09518 276 GVVAIVGRPNVGKS-TL----VNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQI 350 (712)
T ss_pred cEEEEECCCCCCHH-HH----HHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHH
Confidence 34999999998875 77 454443221 112211 1111012467888776211 1 22345
Q ss_pred HHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc
Q 003796 141 MAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT 194 (795)
Q Consensus 141 ~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~ 194 (795)
++.-||++|||+|++.| +...-.++++.|+.+|.|-+ .|++..|.
T Consensus 351 ~~~~aD~iL~VvDa~~~--------~~~~d~~i~~~Lr~~~~pvI-lV~NK~D~ 395 (712)
T PRK09518 351 AVSLADAVVFVVDGQVG--------LTSTDERIVRMLRRAGKPVV-LAVNKIDD 395 (712)
T ss_pred HHHhCCEEEEEEECCCC--------CCHHHHHHHHHHHhcCCCEE-EEEECccc
Confidence 67889999999999854 55566678888888998655 46777775
No 160
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=88.79 E-value=9.7 Score=37.10 Aligned_cols=106 Identities=15% Similarity=0.164 Sum_probs=56.6
Q ss_pred EEEecCCCccChhhHHHHHHHh-hccCCCC-CcceEEE--ecCceeeEEEEeCCCCC--hHHHHHHHhhhceEEEeeeCC
Q 003796 82 IVLFGLSASVNLNSVREDLLRQ-LSSEGTG-ALSSTVS--SSKYRLRTSVLQAPHGD--LVGCMEMAKVADLVAFVASAS 155 (795)
Q Consensus 82 V~Vvg~~~~~~~~sl~~~lvk~-~~~~~~~-~g~~tv~--~~r~k~Ritfie~~~~d--l~~~LD~aKvADlVll~idas 155 (795)
|+|+|.++.+.. +|++.++.. +...... ...+++. ....+.++.++.++-.. ........+-||++||++|++
T Consensus 3 v~ivG~~~vGKT-sl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~ 81 (166)
T cd01893 3 IVLIGDEGVGKS-SLIMSLVSEEFPENVPRVLPEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYSVD 81 (166)
T ss_pred EEEECCCCCCHH-HHHHHHHhCcCCccCCCcccceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEECC
Confidence 789999998875 673333321 1110001 1223332 22235677788776221 223455568899999999987
Q ss_pred CccccccccccChHHHHHHHHHHhcC-CCceEEEeccCCc
Q 003796 156 SFSEESMSYYIDSFGNQCLSVFRSLG-LPSTAVLIRDLPT 194 (795)
Q Consensus 156 ~g~~~~~~~~fe~eg~e~L~~l~aqG-~P~vigVl~~Ld~ 194 (795)
.. ..|+.--...+..++.++ -..++.|+++.|.
T Consensus 82 ~~------~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl 115 (166)
T cd01893 82 RP------STLERIRTKWLPLIRRLGVKVPIILVGNKSDL 115 (166)
T ss_pred CH------HHHHHHHHHHHHHHHHhCCCCCEEEEEEchhc
Confidence 43 334442222344444432 2345667788775
No 161
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=88.63 E-value=3 Score=40.70 Aligned_cols=102 Identities=8% Similarity=0.019 Sum_probs=57.8
Q ss_pred EEEEEecCCCccChhhHHHHHHHhhccCC--C----CCc----ceEEEecCceeeEEEEeCCC-CChHHHH-HHHhhhce
Q 003796 80 RVIVLFGLSASVNLNSVREDLLRQLSSEG--T----GAL----SSTVSSSKYRLRTSVLQAPH-GDLVGCM-EMAKVADL 147 (795)
Q Consensus 80 ~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~--~----~~g----~~tv~~~r~k~Ritfie~~~-~dl~~~L-D~aKvADl 147 (795)
+=|+|+|+++.+.. +| +..|+... . +.| ..++..+...-+++++.++. .....+. ..++-||.
T Consensus 4 ~ki~vvG~~~~GKS-sl----~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~ 78 (167)
T cd01867 4 FKLLLIGDSGVGKS-CL----LLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMG 78 (167)
T ss_pred eEEEEECCCCCCHH-HH----HHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCE
Confidence 34899999998886 67 44443322 1 112 22333343456788899873 2234443 34678999
Q ss_pred EEEeeeCCCccccccccccChHHHHHHHHHHhc---CCCceEEEeccCCc
Q 003796 148 VAFVASASSFSEESMSYYIDSFGNQCLSVFRSL---GLPSTAVLIRDLPT 194 (795)
Q Consensus 148 Vll~idas~g~~~~~~~~fe~eg~e~L~~l~aq---G~P~vigVl~~Ld~ 194 (795)
+|+++|++.+ ..|+. -.+.+..++.+ +.|-+ .|.+..|.
T Consensus 79 ~i~v~d~~~~------~s~~~-~~~~~~~i~~~~~~~~p~i-iv~nK~Dl 120 (167)
T cd01867 79 IILVYDITDE------KSFEN-IRNWMRNIEEHASEDVERM-LVGNKCDM 120 (167)
T ss_pred EEEEEECcCH------HHHHh-HHHHHHHHHHhCCCCCcEE-EEEECccc
Confidence 9999998753 22432 22344444433 44444 44566664
No 162
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=88.62 E-value=5.8 Score=40.91 Aligned_cols=102 Identities=8% Similarity=0.036 Sum_probs=55.2
Q ss_pred EEEecCCCccChhhHHHHHHHhhccCCCCC------cc----eEEEe-cCceeeEEEEeCCCCC-hHHHH-HHHhhhceE
Q 003796 82 IVLFGLSASVNLNSVREDLLRQLSSEGTGA------LS----STVSS-SKYRLRTSVLQAPHGD-LVGCM-EMAKVADLV 148 (795)
Q Consensus 82 V~Vvg~~~~~~~~sl~~~lvk~~~~~~~~~------g~----~tv~~-~r~k~Ritfie~~~~d-l~~~L-D~aKvADlV 148 (795)
|+|+|.++.+.. +| +..|....... |. .++.. +....++.++.++... ...+. ...+-||.+
T Consensus 5 IvvvG~~~vGKT-sL----i~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i 79 (211)
T cd04111 5 LIVIGDSTVGKS-SL----LKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGV 79 (211)
T ss_pred EEEECCCCCCHH-HH----HHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEE
Confidence 889999998876 67 44443322111 21 12222 2334578888876322 22322 456789999
Q ss_pred EEeeeCCCccccccccccChHHHHHHHHHHhcC--CCceEEEeccCCc
Q 003796 149 AFVASASSFSEESMSYYIDSFGNQCLSVFRSLG--LPSTAVLIRDLPT 194 (795)
Q Consensus 149 ll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG--~P~vigVl~~Ld~ 194 (795)
|+|+|.+.. ..|+.-...+-.+++..+ -+.++.|.++.|.
T Consensus 80 ilv~D~~~~------~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl 121 (211)
T cd04111 80 LLVFDITNR------ESFEHVHDWLEEARSHIQPHRPVFILVGHKCDL 121 (211)
T ss_pred EEEEECCCH------HHHHHHHHHHHHHHHhcCCCCCeEEEEEEcccc
Confidence 999998742 235443332222333222 2334556677775
No 163
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=88.58 E-value=3.7 Score=40.32 Aligned_cols=101 Identities=18% Similarity=0.162 Sum_probs=58.1
Q ss_pred EEEecCCCccChhhHHHHHHHhhccCC------CCCcceEEEecCceeeEEEEeCCC-CChHHHH-HHHhhhceEEEeee
Q 003796 82 IVLFGLSASVNLNSVREDLLRQLSSEG------TGALSSTVSSSKYRLRTSVLQAPH-GDLVGCM-EMAKVADLVAFVAS 153 (795)
Q Consensus 82 V~Vvg~~~~~~~~sl~~~lvk~~~~~~------~~~g~~tv~~~r~k~Ritfie~~~-~dl~~~L-D~aKvADlVll~id 153 (795)
|+|+|+++.++. +| +..|.... .+.|...+.....+.++.++.++- ..+..+. ...+-||.+|+|+|
T Consensus 2 i~ivG~~~vGKT-sl----i~~~~~~~~~~~~~pt~g~~~~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D 76 (164)
T cd04162 2 ILVLGLDGAGKT-SL----LHSLSSERSLESVVPTTGFNSVAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVD 76 (164)
T ss_pred EEEECCCCCCHH-HH----HHHHhcCCCcccccccCCcceEEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEE
Confidence 789999998876 66 44443221 111433333333457888998762 2344433 35788999999999
Q ss_pred CCCccccccccccChHHHHHHHHHHh-cCCCceEEEeccCCc
Q 003796 154 ASSFSEESMSYYIDSFGNQCLSVFRS-LGLPSTAVLIRDLPT 194 (795)
Q Consensus 154 as~g~~~~~~~~fe~eg~e~L~~l~a-qG~P~vigVl~~Ld~ 194 (795)
++.. ..|+..-..+..+++. .+.| ++.|.+..|.
T Consensus 77 ~t~~------~s~~~~~~~l~~~~~~~~~~p-iilv~NK~Dl 111 (164)
T cd04162 77 SADS------ERLPLARQELHQLLQHPPDLP-LVVLANKQDL 111 (164)
T ss_pred CCCH------HHHHHHHHHHHHHHhCCCCCc-EEEEEeCcCC
Confidence 8842 2233322233334332 3544 5567787775
No 164
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=88.18 E-value=2.7 Score=41.72 Aligned_cols=106 Identities=13% Similarity=0.043 Sum_probs=59.8
Q ss_pred EEEEEecCCCccChhhHHHHHH-HhhccCCCCCcc--eEEEecCceeeEEEEeCCC-CChHHHHHH-HhhhceEEEeeeC
Q 003796 80 RVIVLFGLSASVNLNSVREDLL-RQLSSEGTGALS--STVSSSKYRLRTSVLQAPH-GDLVGCMEM-AKVADLVAFVASA 154 (795)
Q Consensus 80 ~iV~Vvg~~~~~~~~sl~~~lv-k~~~~~~~~~g~--~tv~~~r~k~Ritfie~~~-~dl~~~LD~-aKvADlVll~ida 154 (795)
.-|+++|+++++.. +|+..++ ..+..+..+.|. .++.. ...++.|+.++- .....+... .+-||.+|+|+|+
T Consensus 14 ~ki~l~G~~~~GKT-sL~~~~~~~~~~~~~~t~~~~~~~~~~--~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v~D~ 90 (175)
T smart00177 14 MRILMVGLDAAGKT-TILYKLKLGESVTTIPTIGFNVETVTY--KNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVVDS 90 (175)
T ss_pred cEEEEEcCCCCCHH-HHHHHHhcCCCCCcCCccccceEEEEE--CCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEEC
Confidence 45899999998886 6633221 111111111121 12222 235677888873 234455444 5889999999999
Q ss_pred CCccccccccccChHHHHHHHHHHhcCC--CceEEEeccCCc
Q 003796 155 SSFSEESMSYYIDSFGNQCLSVFRSLGL--PSTAVLIRDLPT 194 (795)
Q Consensus 155 s~g~~~~~~~~fe~eg~e~L~~l~aqG~--P~vigVl~~Ld~ 194 (795)
+.- ..|+..-..+..+++.+.+ +.++.|++..|.
T Consensus 91 t~~------~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl 126 (175)
T smart00177 91 NDR------DRIDEAREELHRMLNEDELRDAVILVFANKQDL 126 (175)
T ss_pred CCH------HHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCc
Confidence 842 2355544455555554433 235667888885
No 165
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=88.06 E-value=5.9 Score=40.80 Aligned_cols=101 Identities=11% Similarity=0.158 Sum_probs=57.6
Q ss_pred EEEEecCCCccChhhHHHHHHHhhccCC------CCCc----ceEEEecCceeeEEEEeCCCC-ChHHHH-HHHhhhceE
Q 003796 81 VIVLFGLSASVNLNSVREDLLRQLSSEG------TGAL----SSTVSSSKYRLRTSVLQAPHG-DLVGCM-EMAKVADLV 148 (795)
Q Consensus 81 iV~Vvg~~~~~~~~sl~~~lvk~~~~~~------~~~g----~~tv~~~r~k~Ritfie~~~~-dl~~~L-D~aKvADlV 148 (795)
-|+|+|.++.+++ +| +..|.... .+.| ..++..+...-.+.++..+-. .+.++. ...+-||.+
T Consensus 2 ~vvvlG~~gVGKT-Sl----i~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~i 76 (202)
T cd04120 2 QVIIIGSRGVGKT-SL----MRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGI 76 (202)
T ss_pred EEEEECcCCCCHH-HH----HHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEE
Confidence 3789999998886 66 44443211 1112 123444444567778877532 233433 346789999
Q ss_pred EEeeeCCCccccccccccChHHHHHHHHHHhc---CCCceEEEeccCCc
Q 003796 149 AFVASASSFSEESMSYYIDSFGNQCLSVFRSL---GLPSTAVLIRDLPT 194 (795)
Q Consensus 149 ll~idas~g~~~~~~~~fe~eg~e~L~~l~aq---G~P~vigVl~~Ld~ 194 (795)
|||+|.+.. ..|+.- .+.+..++.+ ++| ++.|.+..|.
T Consensus 77 IlVfDvtd~------~Sf~~l-~~w~~~i~~~~~~~~p-iilVgNK~DL 117 (202)
T cd04120 77 ILVYDITKK------ETFDDL-PKWMKMIDKYASEDAE-LLLVGNKLDC 117 (202)
T ss_pred EEEEECcCH------HHHHHH-HHHHHHHHHhCCCCCc-EEEEEECccc
Confidence 999998852 234432 2344455443 444 4556777775
No 166
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=88.01 E-value=6 Score=44.21 Aligned_cols=80 Identities=13% Similarity=0.073 Sum_probs=52.1
Q ss_pred CCCCEEEEEecCCCccChhhHHHHHHHhhccCCCCC----------------------------c-ceEEEec-------
Q 003796 76 ASPPRVIVLFGLSASVNLNSVREDLLRQLSSEGTGA----------------------------L-SSTVSSS------- 119 (795)
Q Consensus 76 ~~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~~----------------------------g-~~tv~~~------- 119 (795)
.+.|.+|+|.|+++++++ +|+..|+..+...+... . .+.+.+.
T Consensus 53 ~~~~~~igi~G~~GaGKS-Tl~~~l~~~l~~~g~~v~vi~~Dp~s~~~~gallgd~~r~~~~~~~~~~~~r~~~~~~~l~ 131 (332)
T PRK09435 53 TGNALRIGITGVPGVGKS-TFIEALGMHLIEQGHKVAVLAVDPSSTRTGGSILGDKTRMERLSRHPNAFIRPSPSSGTLG 131 (332)
T ss_pred CCCcEEEEEECCCCCCHH-HHHHHHHHHHHHCCCeEEEEEeCCCccccchhhhchHhHHHhhcCCCCeEEEecCCccccc
Confidence 467999999999998775 56666677775432110 0 1122220
Q ss_pred --------------CceeeEEEEeCCCCChHHHHHHHhhhceEEEeeeCCCc
Q 003796 120 --------------KYRLRTSVLQAPHGDLVGCMEMAKVADLVAFVASASSF 157 (795)
Q Consensus 120 --------------r~k~Ritfie~~~~dl~~~LD~aKvADlVll~idas~g 157 (795)
...-.+.||+-. ..-.+-.+++..||+||++++...|
T Consensus 132 ~~a~~~~~~~~~~~~~g~d~viieT~-Gv~qs~~~i~~~aD~vlvv~~p~~g 182 (332)
T PRK09435 132 GVARKTRETMLLCEAAGYDVILVETV-GVGQSETAVAGMVDFFLLLQLPGAG 182 (332)
T ss_pred chHHHHHHHHHHHhccCCCEEEEECC-CCccchhHHHHhCCEEEEEecCCch
Confidence 112366788876 5557778899999999999875443
No 167
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=87.84 E-value=6.1 Score=38.72 Aligned_cols=105 Identities=10% Similarity=0.096 Sum_probs=57.3
Q ss_pred EEEEecCCCccChhhHHHHHHHhh-c-cCCCCCc----ceEEEecCceeeEEEEeCCCCC-hH-HHHHH-HhhhceEEEe
Q 003796 81 VIVLFGLSASVNLNSVREDLLRQL-S-SEGTGAL----SSTVSSSKYRLRTSVLQAPHGD-LV-GCMEM-AKVADLVAFV 151 (795)
Q Consensus 81 iV~Vvg~~~~~~~~sl~~~lvk~~-~-~~~~~~g----~~tv~~~r~k~Ritfie~~~~d-l~-~~LD~-aKvADlVll~ 151 (795)
-|+|+|+++.+.. +|++.++..- . .+..+.| ..++..+....++.++.++..+ +. .++.. .+-||.+|++
T Consensus 4 ki~vvG~~~vGKT-sli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~v 82 (170)
T cd04115 4 KIIVIGDSNVGKT-CLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVFV 82 (170)
T ss_pred EEEEECCCCCCHH-HHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEEE
Confidence 3899999998886 6733332211 0 0111111 1233344445688888886322 32 34443 5679999999
Q ss_pred eeCCCccccccccccChHHHHHHHHHHhc----CCCceEEEeccCCc
Q 003796 152 ASASSFSEESMSYYIDSFGNQCLSVFRSL----GLPSTAVLIRDLPT 194 (795)
Q Consensus 152 idas~g~~~~~~~~fe~eg~e~L~~l~aq----G~P~vigVl~~Ld~ 194 (795)
+|++.. ..|+.. ..++..+..+ ++| ++.|.+..|.
T Consensus 83 ~d~~~~------~s~~~~-~~~~~~~~~~~~~~~~p-~iiv~nK~Dl 121 (170)
T cd04115 83 YDVTNM------ASFHSL-PSWIEECEQHSLPNEVP-RILVGNKCDL 121 (170)
T ss_pred EECCCH------HHHHhH-HHHHHHHHHhcCCCCCC-EEEEEECccc
Confidence 999853 223322 2344444443 344 4556777775
No 168
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=87.82 E-value=5.4 Score=38.83 Aligned_cols=106 Identities=6% Similarity=0.017 Sum_probs=58.2
Q ss_pred EEEEEecCCCccChhhHHHHHHHhhccCCC-C----C-c----ceEEEecCceeeEEEEeCCCCC-hHHHH-HHHhhhce
Q 003796 80 RVIVLFGLSASVNLNSVREDLLRQLSSEGT-G----A-L----SSTVSSSKYRLRTSVLQAPHGD-LVGCM-EMAKVADL 147 (795)
Q Consensus 80 ~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~-~----~-g----~~tv~~~r~k~Ritfie~~~~d-l~~~L-D~aKvADl 147 (795)
.=|+|+|.++++.. +| +..|..... . . | ..++.....+-++.++.++... ...+. ...+-||.
T Consensus 6 ~ki~vvG~~~~GKT-sl----i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~ 80 (170)
T cd04116 6 LKVILLGDGGVGKS-SL----MNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDC 80 (170)
T ss_pred EEEEEECCCCCCHH-HH----HHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCE
Confidence 45899999998876 67 444432111 1 1 2 1233334445677778876322 22222 35678999
Q ss_pred EEEeeeCCCccccccccccChHHHHHHHHHHh---cCCCceEEEeccCCc
Q 003796 148 VAFVASASSFSEESMSYYIDSFGNQCLSVFRS---LGLPSTAVLIRDLPT 194 (795)
Q Consensus 148 Vll~idas~g~~~~~~~~fe~eg~e~L~~l~a---qG~P~vigVl~~Ld~ 194 (795)
+|+++|.+.. +....+..+-.++++.+.. .++|-++ |++..|.
T Consensus 81 ~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~~~~piil-v~nK~Dl 126 (170)
T cd04116 81 CLLTFAVDDS---QSFQNLSNWKKEFIYYADVKEPESFPFVV-LGNKNDI 126 (170)
T ss_pred EEEEEECCCH---HHHHhHHHHHHHHHHhcccccCCCCcEEE-EEECccc
Confidence 9999998743 1111233455555555432 3455444 5677775
No 169
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=87.67 E-value=7.7 Score=38.32 Aligned_cols=105 Identities=6% Similarity=-0.045 Sum_probs=58.3
Q ss_pred EEEecCCCccChhhHHHHHHHh-hc-cCCCCCc----ceEEEecCceeeEEEEeCCCC-ChHHH-HHHHhhhceEEEeee
Q 003796 82 IVLFGLSASVNLNSVREDLLRQ-LS-SEGTGAL----SSTVSSSKYRLRTSVLQAPHG-DLVGC-MEMAKVADLVAFVAS 153 (795)
Q Consensus 82 V~Vvg~~~~~~~~sl~~~lvk~-~~-~~~~~~g----~~tv~~~r~k~Ritfie~~~~-dl~~~-LD~aKvADlVll~id 153 (795)
|+|+|.++.+.. +|++.++.. +. .+..+.| ..++.......++.|+.++.. ....+ -...+=||++|||+|
T Consensus 3 i~ivG~~~vGKT-sli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 3 VIVVGDLSVGKT-CLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEECCCCCCHH-HHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 779999998886 673332321 11 1111112 122333334567888888621 22223 233677999999999
Q ss_pred CCCccccccccccChHHHHHHHHHHhcCCC---ceEEEeccCCc
Q 003796 154 ASSFSEESMSYYIDSFGNQCLSVFRSLGLP---STAVLIRDLPT 194 (795)
Q Consensus 154 as~g~~~~~~~~fe~eg~e~L~~l~aqG~P---~vigVl~~Ld~ 194 (795)
++.. +.|+.. .+.+..++.+-.| .++.|.++.|.
T Consensus 82 ~~~~------~s~~~~-~~~~~~~~~~~~~~~~~iilVgnK~Dl 118 (170)
T cd04108 82 LTDV------ASLEHT-RQWLEDALKENDPSSVLLFLVGTKKDL 118 (170)
T ss_pred CcCH------HHHHHH-HHHHHHHHHhcCCCCCeEEEEEEChhc
Confidence 9742 224433 3455555444444 36778888885
No 170
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=87.60 E-value=12 Score=35.59 Aligned_cols=105 Identities=10% Similarity=0.076 Sum_probs=56.2
Q ss_pred EEEecCCCccChhhHHHHHHHh-hcc-CCCCCcc---eEEEecCceeeEEEEeCCC-CChHHHHH-HHhhhceEEEeeeC
Q 003796 82 IVLFGLSASVNLNSVREDLLRQ-LSS-EGTGALS---STVSSSKYRLRTSVLQAPH-GDLVGCME-MAKVADLVAFVASA 154 (795)
Q Consensus 82 V~Vvg~~~~~~~~sl~~~lvk~-~~~-~~~~~g~---~tv~~~r~k~Ritfie~~~-~dl~~~LD-~aKvADlVll~ida 154 (795)
|+|+|.++.+.. +|++.++.. +.. +..+.+. .++..+.....+.++..+. .....+.. .++-||.+++++|.
T Consensus 4 i~iiG~~~vGKT-sl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~~~ 82 (162)
T cd04138 4 LVVVGAGGVGKS-ALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAI 82 (162)
T ss_pred EEEECCCCCCHH-HHHHHHHhCCCcCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEEEC
Confidence 789999998886 673333321 111 1111111 1122333344577777763 23444433 56679999999998
Q ss_pred CCccccccccccCh---HHHHHHHHHHhcCCCceEEEeccCCc
Q 003796 155 SSFSEESMSYYIDS---FGNQCLSVFRSLGLPSTAVLIRDLPT 194 (795)
Q Consensus 155 s~g~~~~~~~~fe~---eg~e~L~~l~aqG~P~vigVl~~Ld~ 194 (795)
+.. ..|+. +-.+++......++| ++.|++..|.
T Consensus 83 ~~~------~s~~~~~~~~~~i~~~~~~~~~p-iivv~nK~Dl 118 (162)
T cd04138 83 NSR------KSFEDIHTYREQIKRVKDSDDVP-MVLVGNKCDL 118 (162)
T ss_pred CCH------HHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccc
Confidence 742 22433 333444433334555 4557888885
No 171
>PLN03118 Rab family protein; Provisional
Probab=87.21 E-value=8 Score=39.59 Aligned_cols=104 Identities=11% Similarity=0.022 Sum_probs=57.2
Q ss_pred CEEEEEecCCCccChhhHHHHHHHhhccCCC-----CCcc----eEEEecCceeeEEEEeCCC-CChHHHHH-HHhhhce
Q 003796 79 PRVIVLFGLSASVNLNSVREDLLRQLSSEGT-----GALS----STVSSSKYRLRTSVLQAPH-GDLVGCME-MAKVADL 147 (795)
Q Consensus 79 P~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~-----~~g~----~tv~~~r~k~Ritfie~~~-~dl~~~LD-~aKvADl 147 (795)
++=|+|+|.++.+.. +| +..|..... +.|. .++..+....++.|+.++- .....+.+ ..+-||.
T Consensus 14 ~~kv~ivG~~~vGKT-sl----i~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ 88 (211)
T PLN03118 14 SFKILLIGDSGVGKS-SL----LVSFISSSVEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQG 88 (211)
T ss_pred ceEEEEECcCCCCHH-HH----HHHHHhCCCCCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCE
Confidence 445889999998886 67 433322111 1121 2233333345788888873 23444433 3567999
Q ss_pred EEEeeeCCCccccccccccChHHHHHHHHHHh----cCCCceEEEeccCCc
Q 003796 148 VAFVASASSFSEESMSYYIDSFGNQCLSVFRS----LGLPSTAVLIRDLPT 194 (795)
Q Consensus 148 Vll~idas~g~~~~~~~~fe~eg~e~L~~l~a----qG~P~vigVl~~Ld~ 194 (795)
+||++|++.. ..|+.-...++..+.. .++| ++.|.+..|.
T Consensus 89 ~vlv~D~~~~------~sf~~~~~~~~~~~~~~~~~~~~~-~ilv~NK~Dl 132 (211)
T PLN03118 89 IILVYDVTRR------ETFTNLSDVWGKEVELYSTNQDCV-KMLVGNKVDR 132 (211)
T ss_pred EEEEEECCCH------HHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccc
Confidence 9999999842 2243322223333332 2444 4555677774
No 172
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=87.15 E-value=7 Score=38.02 Aligned_cols=101 Identities=8% Similarity=0.021 Sum_probs=59.3
Q ss_pred EEEecCCCccChhhHHHHHHHhhccCCC------CCcc----eEEEecCceeeEEEEeCCCCC-hHHH-HHHHhhhceEE
Q 003796 82 IVLFGLSASVNLNSVREDLLRQLSSEGT------GALS----STVSSSKYRLRTSVLQAPHGD-LVGC-MEMAKVADLVA 149 (795)
Q Consensus 82 V~Vvg~~~~~~~~sl~~~lvk~~~~~~~------~~g~----~tv~~~r~k~Ritfie~~~~d-l~~~-LD~aKvADlVl 149 (795)
|+|+|+++.+.. +| +..+..... +.|. .++..+..+-.+.++.++... ...+ .-..+-||.+|
T Consensus 4 i~i~G~~~~GKS-sl----i~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l 78 (165)
T cd01865 4 LLIIGNSSVGKT-SF----LFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFI 78 (165)
T ss_pred EEEECCCCCCHH-HH----HHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEE
Confidence 789999998886 67 444433221 1121 123333334578888887311 2222 33468899999
Q ss_pred EeeeCCCccccccccccChHHHHHHHHHHhcC--CCceEEEeccCCc
Q 003796 150 FVASASSFSEESMSYYIDSFGNQCLSVFRSLG--LPSTAVLIRDLPT 194 (795)
Q Consensus 150 l~idas~g~~~~~~~~fe~eg~e~L~~l~aqG--~P~vigVl~~Ld~ 194 (795)
+++|.+.. ..|+. -.+.++.++.+. -+.++.|.+..|.
T Consensus 79 ~v~d~~~~------~s~~~-~~~~~~~i~~~~~~~~piivv~nK~Dl 118 (165)
T cd01865 79 LMYDITNE------ESFNA-VQDWSTQIKTYSWDNAQVILVGNKCDM 118 (165)
T ss_pred EEEECCCH------HHHHH-HHHHHHHHHHhCCCCCCEEEEEECccc
Confidence 99998753 23442 244555665543 2447777888875
No 173
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=86.82 E-value=11 Score=38.26 Aligned_cols=105 Identities=11% Similarity=0.115 Sum_probs=54.6
Q ss_pred EEEecCCCccChhhHHHHHHHh-hcc-CCCCC---cceEEEecCceeeEEEEeCCCC-ChHHHHH-HHhhhceEEEeeeC
Q 003796 82 IVLFGLSASVNLNSVREDLLRQ-LSS-EGTGA---LSSTVSSSKYRLRTSVLQAPHG-DLVGCME-MAKVADLVAFVASA 154 (795)
Q Consensus 82 V~Vvg~~~~~~~~sl~~~lvk~-~~~-~~~~~---g~~tv~~~r~k~Ritfie~~~~-dl~~~LD-~aKvADlVll~ida 154 (795)
|+|+|.++.+.. +|++.++.. +.. +..+. ....+..+....+++|+..+-. ....+.. ..+-||.||||+|+
T Consensus 2 v~vvG~~~vGKT-sll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~ 80 (198)
T cd04147 2 LVFMGAAGVGKT-ALIQRFLYDTFEPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAV 80 (198)
T ss_pred EEEECCCCCCHH-HHHHHHHhCCCCccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEEC
Confidence 689999998876 663322211 000 00110 1122333333467888988721 2233322 35779999999999
Q ss_pred CCccccccccccCh---HHHHHHHHHHhcCCCceEEEeccCCc
Q 003796 155 SSFSEESMSYYIDS---FGNQCLSVFRSLGLPSTAVLIRDLPT 194 (795)
Q Consensus 155 s~g~~~~~~~~fe~---eg~e~L~~l~aqG~P~vigVl~~Ld~ 194 (795)
+.. ..|+. +-.+++......++|-+ .|++..|.
T Consensus 81 ~~~------~s~~~~~~~~~~i~~~~~~~~~pii-lv~NK~Dl 116 (198)
T cd04147 81 DDP------ESFEEVERLREEILEVKEDKFVPIV-VVGNKADS 116 (198)
T ss_pred CCH------HHHHHHHHHHHHHHHhcCCCCCcEE-EEEEcccc
Confidence 853 22332 22233333333466654 46677664
No 174
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=86.75 E-value=10 Score=42.24 Aligned_cols=143 Identities=10% Similarity=0.152 Sum_probs=69.0
Q ss_pred EEEecCCCccChhhHHHHHHHhhccCCC-------CC-cce--EEEecCceeeEEEEeCCCCCh----------HHHHHH
Q 003796 82 IVLFGLSASVNLNSVREDLLRQLSSEGT-------GA-LSS--TVSSSKYRLRTSVLQAPHGDL----------VGCMEM 141 (795)
Q Consensus 82 V~Vvg~~~~~~~~sl~~~lvk~~~~~~~-------~~-g~~--tv~~~r~k~Ritfie~~~~dl----------~~~LD~ 141 (795)
|++||++..+.+ +| +..+++... +. .|. .+.... ..+++|+..| .-+ ...+..
T Consensus 160 V~lvG~pnaGKS-TL----l~~lt~~~~~va~y~fTT~~p~ig~v~~~~-~~~~~i~D~P-Gli~~a~~~~gLg~~flrh 232 (329)
T TIGR02729 160 VGLVGLPNAGKS-TL----ISAVSAAKPKIADYPFTTLVPNLGVVRVDD-GRSFVIADIP-GLIEGASEGAGLGHRFLKH 232 (329)
T ss_pred EEEEcCCCCCHH-HH----HHHHhcCCccccCCCCCccCCEEEEEEeCC-ceEEEEEeCC-CcccCCcccccHHHHHHHH
Confidence 899999998876 77 555543321 11 111 111221 2678888776 322 234455
Q ss_pred HhhhceEEEeeeCCCccccccccccChHHHHHHHHHH-hcCCCceEEEeccCCcchhhhHHHHHHHHhhcccccCCCCee
Q 003796 142 AKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFR-SLGLPSTAVLIRDLPTDLKKRKDLKKMCISSLTSEFPEDCKF 220 (795)
Q Consensus 142 aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~-aqG~P~vigVl~~Ld~~~Kk~~~~kK~lk~~f~~ef~~~~Kl 220 (795)
..-||++|+|+|++.....+..+.++.+-.|+..... ....| ++.|++.+|.... ... +.+...|...+ +..+
T Consensus 233 ierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp-~IIV~NK~DL~~~--~~~-~~~~~~l~~~~--~~~v 306 (329)
T TIGR02729 233 IERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKP-RIVVLNKIDLLDE--EEL-AELLKELKKAL--GKPV 306 (329)
T ss_pred HHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCC-EEEEEeCccCCCh--HHH-HHHHHHHHHHc--CCcE
Confidence 5669999999998741000000112222222222211 12344 4556888885111 111 12222232233 3568
Q ss_pred EEeCC--HHHHHHHHHHHh
Q 003796 221 YAADT--KDELHKFLWLFK 237 (795)
Q Consensus 221 f~l~~--~~E~~nL~R~Is 237 (795)
|.+|. ...+..|...|.
T Consensus 307 i~iSAktg~GI~eL~~~I~ 325 (329)
T TIGR02729 307 FPISALTGEGLDELLYALA 325 (329)
T ss_pred EEEEccCCcCHHHHHHHHH
Confidence 88874 233555555554
No 175
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=86.56 E-value=7.5 Score=45.17 Aligned_cols=97 Identities=18% Similarity=0.153 Sum_probs=56.6
Q ss_pred EEEEEecCCCccChhhHHHHHHHhhccCCC---CC--c----ceE--EEecCceeeEEEEeCCC-CC---------hHHH
Q 003796 80 RVIVLFGLSASVNLNSVREDLLRQLSSEGT---GA--L----SST--VSSSKYRLRTSVLQAPH-GD---------LVGC 138 (795)
Q Consensus 80 ~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~---~~--g----~~t--v~~~r~k~Ritfie~~~-~d---------l~~~ 138 (795)
.-|+|+|.++.++. +| +..+++.+. .. | .++ +..+ ...++++..+- .+ +...
T Consensus 216 ~kV~ivG~~nvGKS-SL----ln~L~~~~~a~v~~~~gtT~d~~~~~i~~~--g~~i~l~DT~G~~~~~~~ie~~gi~~~ 288 (449)
T PRK05291 216 LKVVIAGRPNVGKS-SL----LNALLGEERAIVTDIAGTTRDVIEEHINLD--GIPLRLIDTAGIRETDDEVEKIGIERS 288 (449)
T ss_pred CEEEEECCCCCCHH-HH----HHHHhCCCCcccCCCCCcccccEEEEEEEC--CeEEEEEeCCCCCCCccHHHHHHHHHH
Confidence 45899999998876 77 555544321 11 1 111 2223 24678887652 12 2234
Q ss_pred HHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc
Q 003796 139 MEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT 194 (795)
Q Consensus 139 LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~ 194 (795)
+..++-||++|+|+|++.+ ...+-.+++.. .++.| ++.|++..|.
T Consensus 289 ~~~~~~aD~il~VvD~s~~--------~s~~~~~~l~~--~~~~p-iiiV~NK~DL 333 (449)
T PRK05291 289 REAIEEADLVLLVLDASEP--------LTEEDDEILEE--LKDKP-VIVVLNKADL 333 (449)
T ss_pred HHHHHhCCEEEEEecCCCC--------CChhHHHHHHh--cCCCC-cEEEEEhhhc
Confidence 5668889999999999854 22222333332 45554 5677888775
No 176
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=86.53 E-value=7.9 Score=38.93 Aligned_cols=100 Identities=9% Similarity=0.101 Sum_probs=56.0
Q ss_pred EEEecCCCccChhhHHHHHHHhhccCCC-------CCc----ceEEEecCceeeEEEEeCCCC-ChHHH-HHHHhhhceE
Q 003796 82 IVLFGLSASVNLNSVREDLLRQLSSEGT-------GAL----SSTVSSSKYRLRTSVLQAPHG-DLVGC-MEMAKVADLV 148 (795)
Q Consensus 82 V~Vvg~~~~~~~~sl~~~lvk~~~~~~~-------~~g----~~tv~~~r~k~Ritfie~~~~-dl~~~-LD~aKvADlV 148 (795)
|+|+|.++++.. +| +..|..... +.+ ...+..+..+-+++++..|.. .+..+ ....+-||.+
T Consensus 3 i~vvG~~~vGKT-Sl----i~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ 77 (191)
T cd04112 3 VMLLGDSGVGKT-CL----LVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHAL 77 (191)
T ss_pred EEEECCCCCCHH-HH----HHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEE
Confidence 789999998886 67 444432211 111 112333444567777787622 23333 3456779999
Q ss_pred EEeeeCCCccccccccccChHHHHHHHHHHhc---CCCceEEEeccCCc
Q 003796 149 AFVASASSFSEESMSYYIDSFGNQCLSVFRSL---GLPSTAVLIRDLPT 194 (795)
Q Consensus 149 ll~idas~g~~~~~~~~fe~eg~e~L~~l~aq---G~P~vigVl~~Ld~ 194 (795)
|+|+|++.. ..|+.- ...+..+... ++| ++.|++..|.
T Consensus 78 i~v~D~~~~------~s~~~~-~~~~~~i~~~~~~~~p-iiiv~NK~Dl 118 (191)
T cd04112 78 LLLYDITNK------ASFDNI-RAWLTEIKEYAQEDVV-IMLLGNKADM 118 (191)
T ss_pred EEEEECCCH------HHHHHH-HHHHHHHHHhCCCCCc-EEEEEEcccc
Confidence 999999842 223322 2244444443 343 5666787775
No 177
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=86.42 E-value=10 Score=36.57 Aligned_cols=102 Identities=11% Similarity=0.039 Sum_probs=54.5
Q ss_pred EEEEecCCCccChhhHHHHHHHhh-ccCCCCC-----c---ceEEEecCceeeEEEEeCCC-CChHHHHHH-HhhhceEE
Q 003796 81 VIVLFGLSASVNLNSVREDLLRQL-SSEGTGA-----L---SSTVSSSKYRLRTSVLQAPH-GDLVGCMEM-AKVADLVA 149 (795)
Q Consensus 81 iV~Vvg~~~~~~~~sl~~~lvk~~-~~~~~~~-----g---~~tv~~~r~k~Ritfie~~~-~dl~~~LD~-aKvADlVl 149 (795)
-|+|+|.++.+.. +| +..| .+.-... + ..++..+.....++++..+. ..+..+.+. ++-||.+|
T Consensus 3 ki~i~G~~~vGKT-sl----~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i 77 (163)
T cd04176 3 KVVVLGSGGVGKS-AL----TVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFI 77 (163)
T ss_pred EEEEECCCCCCHH-HH----HHHHHcCCCCCCCCCchhheEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEE
Confidence 4899999998886 56 3333 2211111 1 12333343345677787752 234444443 57799999
Q ss_pred EeeeCCCccccccccccChHHH---HHHHHHHhcCCCceEEEeccCCc
Q 003796 150 FVASASSFSEESMSYYIDSFGN---QCLSVFRSLGLPSTAVLIRDLPT 194 (795)
Q Consensus 150 l~idas~g~~~~~~~~fe~eg~---e~L~~l~aqG~P~vigVl~~Ld~ 194 (795)
+++|.+.. ..|+.-.. ++.+.....++| ++.|++..|.
T Consensus 78 ~v~d~~~~------~s~~~~~~~~~~~~~~~~~~~~p-iviv~nK~Dl 118 (163)
T cd04176 78 VVYSLVNQ------QTFQDIKPMRDQIVRVKGYEKVP-IILVGNKVDL 118 (163)
T ss_pred EEEECCCH------HHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccc
Confidence 99998742 22443222 222221123555 4556777774
No 178
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=86.35 E-value=7.5 Score=37.90 Aligned_cols=106 Identities=14% Similarity=0.124 Sum_probs=59.7
Q ss_pred EEEEecCCCccChhhHHHHHHHhhc--cCCCCCc---ceEEEecCceeeEEEEeCCC-CChHHHHHH-HhhhceEEEeee
Q 003796 81 VIVLFGLSASVNLNSVREDLLRQLS--SEGTGAL---SSTVSSSKYRLRTSVLQAPH-GDLVGCMEM-AKVADLVAFVAS 153 (795)
Q Consensus 81 iV~Vvg~~~~~~~~sl~~~lvk~~~--~~~~~~g---~~tv~~~r~k~Ritfie~~~-~dl~~~LD~-aKvADlVll~id 153 (795)
=|+++|+++++.. +|++.+++.-. .+..+.+ ..++..+....++.++..+- ..+.++.+. .+.||.+||++|
T Consensus 3 ki~liG~~~~GKT-sli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~~ 81 (168)
T cd04177 3 KIVVLGAGGVGKS-ALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVYS 81 (168)
T ss_pred EEEEECCCCCCHH-HHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEEE
Confidence 3899999998886 67333332211 1111111 12233343446778888763 345555554 478999999999
Q ss_pred CCCccccccccccC---hHHHHHHHHHHhcCCCceEEEeccCCc
Q 003796 154 ASSFSEESMSYYID---SFGNQCLSVFRSLGLPSTAVLIRDLPT 194 (795)
Q Consensus 154 as~g~~~~~~~~fe---~eg~e~L~~l~aqG~P~vigVl~~Ld~ 194 (795)
.+.. +.|+ .+-.++++....-+.|-+ .|.+..|.
T Consensus 82 ~~~~------~s~~~~~~~~~~i~~~~~~~~~pii-iv~nK~D~ 118 (168)
T cd04177 82 VTSE------ASLNELGELREQVLRIKDSDNVPMV-LVGNKADL 118 (168)
T ss_pred CCCH------HHHHHHHHHHHHHHHhhCCCCCCEE-EEEEChhc
Confidence 8753 2233 333444444334577754 46777774
No 179
>PTZ00369 Ras-like protein; Provisional
Probab=85.98 E-value=11 Score=37.90 Aligned_cols=103 Identities=12% Similarity=0.042 Sum_probs=56.6
Q ss_pred EEEEEecCCCccChhhHHHHHHHhhccCC------CCCcc---eEEEecCceeeEEEEeCCC-CChHHHHH-HHhhhceE
Q 003796 80 RVIVLFGLSASVNLNSVREDLLRQLSSEG------TGALS---STVSSSKYRLRTSVLQAPH-GDLVGCME-MAKVADLV 148 (795)
Q Consensus 80 ~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~------~~~g~---~tv~~~r~k~Ritfie~~~-~dl~~~LD-~aKvADlV 148 (795)
+=|+|+|.++.+.. +| +..|.... .+.|. .++..+.....+.++..+- .+...+.. ..+-||.+
T Consensus 6 ~Ki~iiG~~~~GKT-sL----i~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~i 80 (189)
T PTZ00369 6 YKLVVVGGGGVGKS-AL----TIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGF 80 (189)
T ss_pred eEEEEECCCCCCHH-HH----HHHHhcCCCCcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEE
Confidence 34789999998876 66 44443221 11121 1223333345677787753 34444433 56789999
Q ss_pred EEeeeCCCccccccccccCh---HHHHHHHHHHhcCCCceEEEeccCCc
Q 003796 149 AFVASASSFSEESMSYYIDS---FGNQCLSVFRSLGLPSTAVLIRDLPT 194 (795)
Q Consensus 149 ll~idas~g~~~~~~~~fe~---eg~e~L~~l~aqG~P~vigVl~~Ld~ 194 (795)
|+++|.+.. ..|+. +-.++++.+...++| ++.|.+..|.
T Consensus 81 ilv~D~s~~------~s~~~~~~~~~~i~~~~~~~~~p-iiiv~nK~Dl 122 (189)
T PTZ00369 81 LCVYSITSR------SSFEEIASFREQILRVKDKDRVP-MILVGNKCDL 122 (189)
T ss_pred EEEEECCCH------HHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccc
Confidence 999999853 22333 333343333333444 4556677664
No 180
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=85.72 E-value=16 Score=38.82 Aligned_cols=155 Identities=10% Similarity=0.115 Sum_probs=78.4
Q ss_pred EEEecCCCccChhhHHHHHHHhhc-cCCC-----CCcc---eEEEecCceeeEEEEeCCC-CChHHHHHH-HhhhceEEE
Q 003796 82 IVLFGLSASVNLNSVREDLLRQLS-SEGT-----GALS---STVSSSKYRLRTSVLQAPH-GDLVGCMEM-AKVADLVAF 150 (795)
Q Consensus 82 V~Vvg~~~~~~~~sl~~~lvk~~~-~~~~-----~~g~---~tv~~~r~k~Ritfie~~~-~dl~~~LD~-aKvADlVll 150 (795)
|+|+|.++.+.. +| +..|. +.-. +.+. .++......-.+.++..+. .++.+|-.. .+-||.+||
T Consensus 3 VvvlG~~gvGKT-SL----i~r~~~~~f~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIl 77 (247)
T cd04143 3 MVVLGASKVGKT-AI----VSRFLGGRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFIL 77 (247)
T ss_pred EEEECcCCCCHH-HH----HHHHHcCCCCCCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEE
Confidence 789999998876 77 44442 2111 1121 1222232334677787753 334444443 467999999
Q ss_pred eeeCCCccccccccccCh---HHHHHHHHH--------HhcCCCceEEEeccCCcchhhhHHHHHHHHhhcccccCCCCe
Q 003796 151 VASASSFSEESMSYYIDS---FGNQCLSVF--------RSLGLPSTAVLIRDLPTDLKKRKDLKKMCISSLTSEFPEDCK 219 (795)
Q Consensus 151 ~idas~g~~~~~~~~fe~---eg~e~L~~l--------~aqG~P~vigVl~~Ld~~~Kk~~~~kK~lk~~f~~ef~~~~K 219 (795)
|+|.+.. ..|+. +-.+++..- ...++| +|.|.+..|.. ..+......++..+... .+..
T Consensus 78 Vfdv~~~------~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~p-iIivgNK~Dl~-~~~~v~~~ei~~~~~~~--~~~~ 147 (247)
T cd04143 78 VFSLDNR------ESFEEVCRLREQILETKSCLKNKTKENVKIP-MVICGNKADRD-FPREVQRDEVEQLVGGD--ENCA 147 (247)
T ss_pred EEeCCCH------HHHHHHHHHHHHHHHhhcccccccccCCCCc-EEEEEECccch-hccccCHHHHHHHHHhc--CCCE
Confidence 9998842 22432 333333321 012344 45567777751 11111111222222111 1456
Q ss_pred eEEeCC--HHHHHHHHHHHhhccccCcccccCCC
Q 003796 220 FYAADT--KDELHKFLWLFKEQRLTVPHWRNQRP 251 (795)
Q Consensus 220 lf~l~~--~~E~~nL~R~Is~~k~r~l~WR~~rp 251 (795)
+|.+|. ...+..|...|..+...|..+..++.
T Consensus 148 ~~evSAktg~gI~elf~~L~~~~~~p~e~~~~~~ 181 (247)
T cd04143 148 YFEVSAKKNSNLDEMFRALFSLAKLPNEMSPSLH 181 (247)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhccccccCcccc
Confidence 777773 34566777777766655655544443
No 181
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=85.59 E-value=17 Score=35.48 Aligned_cols=101 Identities=9% Similarity=0.096 Sum_probs=53.3
Q ss_pred EEEecCCCccChhhHHHHHHHhhccCC-CC----C-cc---eEEEecCceeeEEEEeCCCCC-hHHHH-HHHhhhceEEE
Q 003796 82 IVLFGLSASVNLNSVREDLLRQLSSEG-TG----A-LS---STVSSSKYRLRTSVLQAPHGD-LVGCM-EMAKVADLVAF 150 (795)
Q Consensus 82 V~Vvg~~~~~~~~sl~~~lvk~~~~~~-~~----~-g~---~tv~~~r~k~Ritfie~~~~d-l~~~L-D~aKvADlVll 150 (795)
|+|+|+++++.. +| +..|.... .. . +. ..+.....+-.+.++..+... ...+. -..+-||.+++
T Consensus 4 i~iiG~~~~GKT-sl----~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 78 (175)
T cd01870 4 LVIVGDGACGKT-CL----LIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 78 (175)
T ss_pred EEEECCCCCCHH-HH----HHHHhcCCCCCCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEE
Confidence 789999998886 67 44443211 11 1 11 123333334467777766222 22221 23466999999
Q ss_pred eeeCCCccccccccccChHHHHHHHHHHhc--CCCceEEEeccCCc
Q 003796 151 VASASSFSEESMSYYIDSFGNQCLSVFRSL--GLPSTAVLIRDLPT 194 (795)
Q Consensus 151 ~idas~g~~~~~~~~fe~eg~e~L~~l~aq--G~P~vigVl~~Ld~ 194 (795)
++|.+.- ..|+.....++..++.. ++| ++.|.+..|.
T Consensus 79 v~~~~~~------~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl 117 (175)
T cd01870 79 CFSIDSP------DSLENIPEKWTPEVKHFCPNVP-IILVGNKKDL 117 (175)
T ss_pred EEECCCH------HHHHHHHHHHHHHHHhhCCCCC-EEEEeeChhc
Confidence 9998741 22433333344444432 444 4566677664
No 182
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=85.22 E-value=16 Score=42.25 Aligned_cols=101 Identities=13% Similarity=0.126 Sum_probs=55.3
Q ss_pred EEEecCCCccChhhHHHHHHHhhccCCCC--C------cceE--EEecCceeeEEEEeCCCCCh----------HHHHHH
Q 003796 82 IVLFGLSASVNLNSVREDLLRQLSSEGTG--A------LSST--VSSSKYRLRTSVLQAPHGDL----------VGCMEM 141 (795)
Q Consensus 82 V~Vvg~~~~~~~~sl~~~lvk~~~~~~~~--~------g~~t--v~~~r~k~Ritfie~~~~dl----------~~~LD~ 141 (795)
|++||+|+.+.+ +| +..+++.... . .|.. +... -..+|+|+..| .=+ ...|-.
T Consensus 161 VglVG~pNaGKS-TL----Ln~Lt~ak~kIa~ypfTTl~PnlG~v~~~-~~~~~~laD~P-Gliega~~~~gLg~~fLrh 233 (424)
T PRK12297 161 VGLVGFPNVGKS-TL----LSVVSNAKPKIANYHFTTLVPNLGVVETD-DGRSFVMADIP-GLIEGASEGVGLGHQFLRH 233 (424)
T ss_pred EEEEcCCCCCHH-HH----HHHHHcCCCccccCCcceeceEEEEEEEe-CCceEEEEECC-CCcccccccchHHHHHHHH
Confidence 899999998875 77 5556544321 1 1211 1111 03578888777 321 344555
Q ss_pred HhhhceEEEeeeCCCccccccccccChHHHHHHHHHHh-----cCCCceEEEeccCCc
Q 003796 142 AKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRS-----LGLPSTAVLIRDLPT 194 (795)
Q Consensus 142 aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~a-----qG~P~vigVl~~Ld~ 194 (795)
+.-||++|+|+|++.. +....++. -..+++.|.. .+.|.+ .|++..|.
T Consensus 234 ier~~llI~VID~s~~---~~~dp~e~-~~~i~~EL~~y~~~L~~kP~I-VV~NK~DL 286 (424)
T PRK12297 234 IERTRVIVHVIDMSGS---EGRDPIED-YEKINKELKLYNPRLLERPQI-VVANKMDL 286 (424)
T ss_pred HhhCCEEEEEEeCCcc---ccCChHHH-HHHHHHHHhhhchhccCCcEE-EEEeCCCC
Confidence 5669999999999731 00011111 1233344443 355554 56887775
No 183
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=85.15 E-value=2.3 Score=42.36 Aligned_cols=123 Identities=13% Similarity=0.161 Sum_probs=67.7
Q ss_pred EEEEecCCCccChhhHHHHHHHhhccCCCCC----cc-eEEEecCc---eeeEEEEeCCC-CChHHH-------HHHH--
Q 003796 81 VIVLFGLSASVNLNSVREDLLRQLSSEGTGA----LS-STVSSSKY---RLRTSVLQAPH-GDLVGC-------MEMA-- 142 (795)
Q Consensus 81 iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~~----g~-~tv~~~r~---k~Ritfie~~~-~dl~~~-------LD~a-- 142 (795)
-||++|.|.+++. +| +..+|+..... |. +....+.+ ...+.|+-.|- -++.+. .+..
T Consensus 2 ~ialvG~PNvGKS-tL----fN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~ 76 (156)
T PF02421_consen 2 RIALVGNPNVGKS-TL----FNALTGAKQKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLS 76 (156)
T ss_dssp EEEEEESTTSSHH-HH----HHHHHTTSEEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHH-HH----HHHHHCCCceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhh
Confidence 4899999998885 77 56665544221 11 11111222 27888888872 122221 2222
Q ss_pred hhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchhhhHH-HHHHHHhhcccccCCCCeeE
Q 003796 143 KVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKKRKD-LKKMCISSLTSEFPEDCKFY 221 (795)
Q Consensus 143 KvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~~~Kk~~~-~kK~lk~~f~~ef~~~~Klf 221 (795)
.-.|+||+++||+. ++ ...+++.-|...|+|-| .||+..|...++.-. --+.|.+++ |..++
T Consensus 77 ~~~D~ii~VvDa~~---------l~-r~l~l~~ql~e~g~P~v-vvlN~~D~a~~~g~~id~~~Ls~~L------g~pvi 139 (156)
T PF02421_consen 77 EKPDLIIVVVDATN---------LE-RNLYLTLQLLELGIPVV-VVLNKMDEAERKGIEIDAEKLSERL------GVPVI 139 (156)
T ss_dssp TSSSEEEEEEEGGG---------HH-HHHHHHHHHHHTTSSEE-EEEETHHHHHHTTEEE-HHHHHHHH------TS-EE
T ss_pred cCCCEEEEECCCCC---------HH-HHHHHHHHHHHcCCCEE-EEEeCHHHHHHcCCEECHHHHHHHh------CCCEE
Confidence 24899999999984 43 34567888889999954 456666641111110 123333333 46788
Q ss_pred EeCC
Q 003796 222 AADT 225 (795)
Q Consensus 222 ~l~~ 225 (795)
+++.
T Consensus 140 ~~sa 143 (156)
T PF02421_consen 140 PVSA 143 (156)
T ss_dssp EEBT
T ss_pred EEEe
Confidence 8874
No 184
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=85.13 E-value=4.4 Score=42.73 Aligned_cols=84 Identities=17% Similarity=0.273 Sum_probs=55.2
Q ss_pred EEEecCCCccChhhHHHHHHHhhccCCCCC--------cce--EEEecCceeeEEEEeCCCCC----------hHHHHHH
Q 003796 82 IVLFGLSASVNLNSVREDLLRQLSSEGTGA--------LSS--TVSSSKYRLRTSVLQAPHGD----------LVGCMEM 141 (795)
Q Consensus 82 V~Vvg~~~~~~~~sl~~~lvk~~~~~~~~~--------g~~--tv~~~r~k~Ritfie~~~~d----------l~~~LD~ 141 (795)
|+++|+++++.. +| ++.+++..... .+. .+... ..+++++..| .- ...++.+
T Consensus 3 v~lvG~~~~GKS-tL----l~~Ltg~~~~v~~~~~tT~~~~~g~~~~~--~~~i~l~Dtp-G~~~~~~~~~~~~~~~l~~ 74 (233)
T cd01896 3 VALVGFPSVGKS-TL----LSKLTNTKSEVAAYEFTTLTCVPGVLEYK--GAKIQLLDLP-GIIEGAADGKGRGRQVIAV 74 (233)
T ss_pred EEEECCCCCCHH-HH----HHHHHCCCccccCCCCccccceEEEEEEC--CeEEEEEECC-CcccccccchhHHHHHHHh
Confidence 789999998875 77 66665543211 111 11122 3678888876 32 1357889
Q ss_pred HhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCC
Q 003796 142 AKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGL 182 (795)
Q Consensus 142 aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~ 182 (795)
++-||++|+|+|++.. +..-..++..|...|+
T Consensus 75 ~~~ad~il~V~D~t~~---------~~~~~~~~~~l~~~gi 106 (233)
T cd01896 75 ARTADLILMVLDATKP---------EGHREILERELEGVGI 106 (233)
T ss_pred hccCCEEEEEecCCcc---------hhHHHHHHHHHHHcCc
Confidence 9999999999999742 2244567777877777
No 185
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=84.99 E-value=13 Score=36.04 Aligned_cols=66 Identities=23% Similarity=0.243 Sum_probs=39.5
Q ss_pred EecCCCccChhhHHHHHHHhhccCCC--CC------cc--eEEEecCceeeEEEEeCCCCC----------hHHHHHHHh
Q 003796 84 LFGLSASVNLNSVREDLLRQLSSEGT--GA------LS--STVSSSKYRLRTSVLQAPHGD----------LVGCMEMAK 143 (795)
Q Consensus 84 Vvg~~~~~~~~sl~~~lvk~~~~~~~--~~------g~--~tv~~~r~k~Ritfie~~~~d----------l~~~LD~aK 143 (795)
++|+++.+.. +| ++.++.... .. .+ -.+..+. ..++.|+..| .- ...++..++
T Consensus 1 iiG~~~~GKS-tl----l~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~i~Dtp-G~~~~~~~~~~~~~~~~~~~~ 73 (176)
T cd01881 1 LVGLPNVGKS-TL----LNALTNAKPKVANYPFTTLEPNLGVVEVPD-GARIQVADIP-GLIEGASEGRGLGNQFLAHIR 73 (176)
T ss_pred CCCCCCCcHH-HH----HHHHhcCCccccCCCceeecCcceEEEcCC-CCeEEEEecc-ccchhhhcCCCccHHHHHHHh
Confidence 4788888876 77 554444321 11 11 1122220 3578888776 31 224567778
Q ss_pred hhceEEEeeeCCC
Q 003796 144 VADLVAFVASASS 156 (795)
Q Consensus 144 vADlVll~idas~ 156 (795)
-||.|++++|++.
T Consensus 74 ~~d~ii~v~d~~~ 86 (176)
T cd01881 74 RADAILHVVDASE 86 (176)
T ss_pred ccCEEEEEEeccC
Confidence 8999999999985
No 186
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=84.90 E-value=7.2 Score=45.27 Aligned_cols=100 Identities=14% Similarity=0.130 Sum_probs=59.2
Q ss_pred CCEEEEEecCCCccChhhHHHHHHHhhccCCC---CC--cc------eEEEecCceeeEEEEeCCC-CChHH--------
Q 003796 78 PPRVIVLFGLSASVNLNSVREDLLRQLSSEGT---GA--LS------STVSSSKYRLRTSVLQAPH-GDLVG-------- 137 (795)
Q Consensus 78 pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~---~~--g~------~tv~~~r~k~Ritfie~~~-~dl~~-------- 137 (795)
.+.-|+|+|+++.++. +| +..|++.+. +. |. .++..+. ..++++..+- .+..+
T Consensus 202 ~g~kVvIvG~~nvGKS-SL----iN~L~~~~~aivs~~pgtTrd~~~~~i~~~g--~~v~l~DTaG~~~~~~~ie~~gi~ 274 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKS-SL----LNALLKQDRAIVSDIKGTTRDVVEGDFELNG--ILIKLLDTAGIREHADFVERLGIE 274 (442)
T ss_pred cCCEEEEECCCCCcHH-HH----HHHHhCCCCcccCCCCCcEEEEEEEEEEECC--EEEEEeeCCCcccchhHHHHHHHH
Confidence 3456889999998886 77 444443321 11 21 1222222 4567777652 12222
Q ss_pred -HHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc
Q 003796 138 -CMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT 194 (795)
Q Consensus 138 -~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~ 194 (795)
.....+-||++|+|+|++.+ ...+.. ++..++..|.| ++.|++..|.
T Consensus 275 ~~~~~~~~aD~il~V~D~s~~--------~s~~~~-~l~~~~~~~~p-iIlV~NK~Dl 322 (442)
T TIGR00450 275 KSFKAIKQADLVIYVLDASQP--------LTKDDF-LIIDLNKSKKP-FILVLNKIDL 322 (442)
T ss_pred HHHHHHhhCCEEEEEEECCCC--------CChhHH-HHHHHhhCCCC-EEEEEECccC
Confidence 24566789999999999854 222222 56666666765 5678888885
No 187
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=84.50 E-value=28 Score=34.19 Aligned_cols=101 Identities=11% Similarity=0.059 Sum_probs=55.3
Q ss_pred EEEecCCCccChhhHHHHHHHhhccCCC-C----C-c---ceEEEecCceeeEEEEeCCCCChHHHH--HHHhhhceEEE
Q 003796 82 IVLFGLSASVNLNSVREDLLRQLSSEGT-G----A-L---SSTVSSSKYRLRTSVLQAPHGDLVGCM--EMAKVADLVAF 150 (795)
Q Consensus 82 V~Vvg~~~~~~~~sl~~~lvk~~~~~~~-~----~-g---~~tv~~~r~k~Ritfie~~~~dl~~~L--D~aKvADlVll 150 (795)
|+|+|+++.++. +| ++.+..... . . + ...+......-++.++..|...-..++ .....+|.+|+
T Consensus 4 v~l~G~~g~GKT-tl----~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 78 (180)
T cd04137 4 IAVLGSRSVGKS-SL----TVQFVEGHFVESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYIL 78 (180)
T ss_pred EEEECCCCCCHH-HH----HHHHHhCCCccccCcchhhhEEEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEE
Confidence 789999998886 66 444432211 1 1 1 112223333446677887632222222 35677999999
Q ss_pred eeeCCCccccccccccChHH---HHHHHHHHhcCCCceEEEeccCCc
Q 003796 151 VASASSFSEESMSYYIDSFG---NQCLSVFRSLGLPSTAVLIRDLPT 194 (795)
Q Consensus 151 ~idas~g~~~~~~~~fe~eg---~e~L~~l~aqG~P~vigVl~~Ld~ 194 (795)
++|.+.+ ..|+.-- ..+++....+++| ++.|.+..|.
T Consensus 79 v~d~~~~------~~~~~~~~~~~~~~~~~~~~~~p-~ilv~NK~Dl 118 (180)
T cd04137 79 VYSVTSR------KSFEVVKVIYDKILDMLGKESVP-IVLVGNKSDL 118 (180)
T ss_pred EEECCCH------HHHHHHHHHHHHHHHhcCCCCCC-EEEEEEchhh
Confidence 9998854 2233222 3333333345667 5566676664
No 188
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=84.40 E-value=13 Score=46.23 Aligned_cols=137 Identities=18% Similarity=0.162 Sum_probs=74.8
Q ss_pred EEEEEecCCCccChhhHHHHHHHhhccCCCC--C-cceEEE-----ecCceeeEEEEeCCC-CChHH-----HH------
Q 003796 80 RVIVLFGLSASVNLNSVREDLLRQLSSEGTG--A-LSSTVS-----SSKYRLRTSVLQAPH-GDLVG-----CM------ 139 (795)
Q Consensus 80 ~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~--~-g~~tv~-----~~r~k~Ritfie~~~-~dl~~-----~L------ 139 (795)
..|+++|.+++++. +| +..+++.... + .-+|+. ......++.++..|- .++.+ -+
T Consensus 4 ~~IaLvG~pNvGKS-TL----fN~Ltg~~~~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~ 78 (772)
T PRK09554 4 LTIGLIGNPNSGKT-TL----FNQLTGARQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIAC 78 (772)
T ss_pred eEEEEECCCCCCHH-HH----HHHHhCCCCccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHH
Confidence 35999999998886 77 5555543321 1 112321 111135788888772 22221 11
Q ss_pred HH--HhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchhh-hHHHHHHHHhhcccccCC
Q 003796 140 EM--AKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKK-RKDLKKMCISSLTSEFPE 216 (795)
Q Consensus 140 D~--aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~~~Kk-~~~~kK~lk~~f~~ef~~ 216 (795)
+. ...+|+||+++|++. .+.. ..++..+..+|+| ++.|++.+|...++ .....+.+++.+
T Consensus 79 ~~l~~~~aD~vI~VvDat~---------ler~-l~l~~ql~e~giP-vIvVlNK~Dl~~~~~i~id~~~L~~~L------ 141 (772)
T PRK09554 79 HYILSGDADLLINVVDASN---------LERN-LYLTLQLLELGIP-CIVALNMLDIAEKQNIRIDIDALSARL------ 141 (772)
T ss_pred HHHhccCCCEEEEEecCCc---------chhh-HHHHHHHHHcCCC-EEEEEEchhhhhccCcHHHHHHHHHHh------
Confidence 11 235899999999985 2322 3355667778998 56678887751121 112233344333
Q ss_pred CCeeEEeCC--HHHHHHHHHHHhh
Q 003796 217 DCKFYAADT--KDELHKFLWLFKE 238 (795)
Q Consensus 217 ~~Klf~l~~--~~E~~nL~R~Is~ 238 (795)
|..++.++. ...+..|...|..
T Consensus 142 G~pVvpiSA~~g~GIdeL~~~I~~ 165 (772)
T PRK09554 142 GCPVIPLVSTRGRGIEALKLAIDR 165 (772)
T ss_pred CCCEEEEEeecCCCHHHHHHHHHH
Confidence 467777773 2334445555543
No 189
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=84.34 E-value=2.7 Score=41.99 Aligned_cols=103 Identities=14% Similarity=0.139 Sum_probs=62.5
Q ss_pred CCCEEEEEecCCCccChhhHHHHHHHhhccCCCC-----Ccc--eEEEecCceeeEEEEeCCCCC--hHHHH-HHHhhhc
Q 003796 77 SPPRVIVLFGLSASVNLNSVREDLLRQLSSEGTG-----ALS--STVSSSKYRLRTSVLQAPHGD--LVGCM-EMAKVAD 146 (795)
Q Consensus 77 ~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~-----~g~--~tv~~~r~k~Ritfie~~~~d--l~~~L-D~aKvAD 146 (795)
....=|+|+||.+++.. ++ ++.+...... .|. .++.. .+.+++|.+++ .+ +.++- ...+-+|
T Consensus 12 ~~~~~ililGl~~sGKT-tl----l~~l~~~~~~~~~pT~g~~~~~i~~--~~~~~~~~d~g-G~~~~~~~w~~y~~~~~ 83 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKT-TL----LNRLKNGEISETIPTIGFNIEEIKY--KGYSLTIWDLG-GQESFRPLWKSYFQNAD 83 (175)
T ss_dssp TSEEEEEEEESTTSSHH-HH----HHHHHSSSEEEEEEESSEEEEEEEE--TTEEEEEEEES-SSGGGGGGGGGGHTTES
T ss_pred CcEEEEEEECCCccchH-HH----HHHhhhccccccCcccccccceeee--CcEEEEEEecc-ccccccccceeeccccc
Confidence 44556899999999886 66 5555432211 132 23333 35789999997 44 22222 3456789
Q ss_pred eEEEeeeCCCccccccccccChHHHHHHHHHH---hcCCCceEEEeccCCc
Q 003796 147 LVAFVASASSFSEESMSYYIDSFGNQCLSVFR---SLGLPSTAVLIRDLPT 194 (795)
Q Consensus 147 lVll~idas~g~~~~~~~~fe~eg~e~L~~l~---aqG~P~vigVl~~Ld~ 194 (795)
.||||+|++.- +.+++--.++-++|. .++.| ++.+++.-|.
T Consensus 84 ~iIfVvDssd~------~~l~e~~~~L~~ll~~~~~~~~p-iLIl~NK~D~ 127 (175)
T PF00025_consen 84 GIIFVVDSSDP------ERLQEAKEELKELLNDPELKDIP-ILILANKQDL 127 (175)
T ss_dssp EEEEEEETTGG------GGHHHHHHHHHHHHTSGGGTTSE-EEEEEESTTS
T ss_pred eeEEEEecccc------eeecccccchhhhcchhhcccce-EEEEeccccc
Confidence 99999999842 346666666666665 34554 3344565553
No 190
>COG1160 Predicted GTPases [General function prediction only]
Probab=84.33 E-value=5.4 Score=45.88 Aligned_cols=133 Identities=13% Similarity=0.112 Sum_probs=79.6
Q ss_pred EEEEEecCCCccChhhHHHHHHHhhccCCCC--C-----------cceEEEecCceeeEEEEeCCC---CC---h-----
Q 003796 80 RVIVLFGLSASVNLNSVREDLLRQLSSEGTG--A-----------LSSTVSSSKYRLRTSVLQAPH---GD---L----- 135 (795)
Q Consensus 80 ~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~--~-----------g~~tv~~~r~k~Ritfie~~~---~d---l----- 135 (795)
.+|||||=|+.+.+ +| ...+++.... . +...+. + +.|++|.-+- ++ |
T Consensus 4 ~~VAIVGRPNVGKS-TL----FNRL~g~r~AIV~D~pGvTRDr~y~~~~~~-~---~~f~lIDTgGl~~~~~~~l~~~i~ 74 (444)
T COG1160 4 PVVAIVGRPNVGKS-TL----FNRLTGRRIAIVSDTPGVTRDRIYGDAEWL-G---REFILIDTGGLDDGDEDELQELIR 74 (444)
T ss_pred CEEEEECCCCCcHH-HH----HHHHhCCeeeEeecCCCCccCCccceeEEc-C---ceEEEEECCCCCcCCchHHHHHHH
Confidence 46999999998775 67 5555544321 1 222222 2 3477776532 12 2
Q ss_pred HHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchhhhHHHHHHHHhhcccccC
Q 003796 136 VGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKKRKDLKKMCISSLTSEFP 215 (795)
Q Consensus 136 ~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~~~Kk~~~~kK~lk~~f~~ef~ 215 (795)
...+-|+.-||+||||+|+..| ...+-+++-+.|+-.+-| |+.|++.+|. ++.. ....-||+.-
T Consensus 75 ~Qa~~Ai~eADvilfvVD~~~G--------it~~D~~ia~~Lr~~~kp-viLvvNK~D~--~~~e----~~~~efyslG- 138 (444)
T COG1160 75 EQALIAIEEADVILFVVDGREG--------ITPADEEIAKILRRSKKP-VILVVNKIDN--LKAE----ELAYEFYSLG- 138 (444)
T ss_pred HHHHHHHHhCCEEEEEEeCCCC--------CCHHHHHHHHHHHhcCCC-EEEEEEcccC--chhh----hhHHHHHhcC-
Confidence 2356788889999999999976 666778888888855555 5566777776 3211 1222333321
Q ss_pred CCCeeEEeCC--HHHHHHHHHHHhh
Q 003796 216 EDCKFYAADT--KDELHKFLWLFKE 238 (795)
Q Consensus 216 ~~~Klf~l~~--~~E~~nL~R~Is~ 238 (795)
-.+.+.+|. -.-+..|+-.|..
T Consensus 139 -~g~~~~ISA~Hg~Gi~dLld~v~~ 162 (444)
T COG1160 139 -FGEPVPISAEHGRGIGDLLDAVLE 162 (444)
T ss_pred -CCCceEeehhhccCHHHHHHHHHh
Confidence 357777774 2334455555533
No 191
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=84.11 E-value=16 Score=35.38 Aligned_cols=101 Identities=9% Similarity=0.067 Sum_probs=56.6
Q ss_pred EEEecCCCccChhhHHHHHHHhhccCCC------CCc----ceEEEecCceeeEEEEeCCCCC-hHHH-HHHHhhhceEE
Q 003796 82 IVLFGLSASVNLNSVREDLLRQLSSEGT------GAL----SSTVSSSKYRLRTSVLQAPHGD-LVGC-MEMAKVADLVA 149 (795)
Q Consensus 82 V~Vvg~~~~~~~~sl~~~lvk~~~~~~~------~~g----~~tv~~~r~k~Ritfie~~~~d-l~~~-LD~aKvADlVl 149 (795)
|+|+|+++.+.. +| +..|..... +.| ..++.....+-++.++.++-.. +..+ ....+=||.+|
T Consensus 5 i~iiG~~~vGKT-sl----i~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 79 (166)
T cd04122 5 YIIIGDMGVGKS-CL----LHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 79 (166)
T ss_pred EEEECCCCCCHH-HH----HHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence 789999998886 67 444432221 111 2233344445677888876222 2222 34578899999
Q ss_pred EeeeCCCccccccccccChHHHHHHHHHHhcCCC--ceEEEeccCCc
Q 003796 150 FVASASSFSEESMSYYIDSFGNQCLSVFRSLGLP--STAVLIRDLPT 194 (795)
Q Consensus 150 l~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P--~vigVl~~Ld~ 194 (795)
|++|.+.. ..|+.- .++++.++...-| .++.|.++.|.
T Consensus 80 lv~d~~~~------~s~~~~-~~~~~~~~~~~~~~~~iiiv~nK~Dl 119 (166)
T cd04122 80 MVYDITRR------STYNHL-SSWLTDARNLTNPNTVIFLIGNKADL 119 (166)
T ss_pred EEEECCCH------HHHHHH-HHHHHHHHHhCCCCCeEEEEEECccc
Confidence 99999842 223322 2344444333333 25556777774
No 192
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=83.94 E-value=11 Score=39.17 Aligned_cols=99 Identities=14% Similarity=0.093 Sum_probs=56.5
Q ss_pred EEEecCCCccChhhHHHHHHHhhc-cCC------CCC----cceEEEecCceeeEEEEeCCCCChHHHHHHH-h-hhceE
Q 003796 82 IVLFGLSASVNLNSVREDLLRQLS-SEG------TGA----LSSTVSSSKYRLRTSVLQAPHGDLVGCMEMA-K-VADLV 148 (795)
Q Consensus 82 V~Vvg~~~~~~~~sl~~~lvk~~~-~~~------~~~----g~~tv~~~r~k~Ritfie~~~~dl~~~LD~a-K-vADlV 148 (795)
|+|+|.++.+.. +| +..|. +.. .+. ...++........++|+.++..+ ..+-+.+ + -||.+
T Consensus 3 I~lvG~~gvGKT-sL----i~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~-~~~~~~~~~~~ad~i 76 (221)
T cd04148 3 VVMLGSPGVGKS-SL----ASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE-MWTEDSCMQYQGDAF 76 (221)
T ss_pred EEEECCCCCcHH-HH----HHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc-hHHHhHHhhcCCCEE
Confidence 789999998886 67 44442 211 111 12344444345678889887333 2333333 4 79999
Q ss_pred EEeeeCCCccccccccccChHHHHHHHHHHhc----CCCceEEEeccCCc
Q 003796 149 AFVASASSFSEESMSYYIDSFGNQCLSVFRSL----GLPSTAVLIRDLPT 194 (795)
Q Consensus 149 ll~idas~g~~~~~~~~fe~eg~e~L~~l~aq----G~P~vigVl~~Ld~ 194 (795)
|||+|++.. ..|+. ..+++..|... +.| +|.|.+..|.
T Consensus 77 ilV~d~td~------~S~~~-~~~~~~~l~~~~~~~~~p-iilV~NK~Dl 118 (221)
T cd04148 77 VVVYSVTDR------SSFER-ASELRIQLRRNRQLEDRP-IILVGNKSDL 118 (221)
T ss_pred EEEEECCCH------HHHHH-HHHHHHHHHHhcCCCCCC-EEEEEEChhc
Confidence 999999853 23442 23344444333 344 5667777774
No 193
>COG2262 HflX GTPases [General function prediction only]
Probab=83.68 E-value=8 Score=44.01 Aligned_cols=55 Identities=20% Similarity=0.173 Sum_probs=36.9
Q ss_pred CChHHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCC--CceEEEeccCCc
Q 003796 133 GDLVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGL--PSTAVLIRDLPT 194 (795)
Q Consensus 133 ~dl~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~--P~vigVl~~Ld~ 194 (795)
.-+.+.|.-++-||++|.|+|||. +.+...-.-..++|+.-|+ +.++.|++.+|.
T Consensus 260 ~AFksTLEE~~~aDlllhVVDaSd-------p~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~ 316 (411)
T COG2262 260 EAFKSTLEEVKEADLLLHVVDASD-------PEILEKLEAVEDVLAEIGADEIPIILVLNKIDL 316 (411)
T ss_pred HHHHHHHHHhhcCCEEEEEeecCC-------hhHHHHHHHHHHHHHHcCCCCCCEEEEEecccc
Confidence 345678999999999999999995 2344444444444444333 456777888773
No 194
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=83.58 E-value=28 Score=35.37 Aligned_cols=144 Identities=11% Similarity=0.150 Sum_probs=77.2
Q ss_pred EEEEEecCCCccChhhHHHHHHHhhcc-CCCC-----Cc----ceEEEecCceeeEEEEeCCC-CChHHHHH-HHhhhce
Q 003796 80 RVIVLFGLSASVNLNSVREDLLRQLSS-EGTG-----AL----SSTVSSSKYRLRTSVLQAPH-GDLVGCME-MAKVADL 147 (795)
Q Consensus 80 ~iV~Vvg~~~~~~~~sl~~~lvk~~~~-~~~~-----~g----~~tv~~~r~k~Ritfie~~~-~dl~~~LD-~aKvADl 147 (795)
+=|+|+|..+.+.. +| +..|.. .... .| ..++..+..+-++.|+..+. .....+.. ..+-||.
T Consensus 7 ~KivviG~~~vGKT-sl----l~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~ 81 (189)
T cd04121 7 LKFLLVGDSDVGKG-EI----LASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQG 81 (189)
T ss_pred eEEEEECCCCCCHH-HH----HHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCE
Confidence 34889999998876 66 444432 1111 11 23344444456788887652 34555543 4589999
Q ss_pred EEEeeeCCCccccccccccChHHHHHHHHHHhc--CCCceEEEeccCCcchhh---hHHHHHHHHhhcccccCCCCeeEE
Q 003796 148 VAFVASASSFSEESMSYYIDSFGNQCLSVFRSL--GLPSTAVLIRDLPTDLKK---RKDLKKMCISSLTSEFPEDCKFYA 222 (795)
Q Consensus 148 Vll~idas~g~~~~~~~~fe~eg~e~L~~l~aq--G~P~vigVl~~Ld~~~Kk---~~~~kK~lk~~f~~ef~~~~Klf~ 222 (795)
+|||+|.+.. ..|+.- ...+..++.+ ++ .+|.|.++.|....+ ..+.+...++ . +..+|-
T Consensus 82 illVfD~t~~------~Sf~~~-~~w~~~i~~~~~~~-piilVGNK~DL~~~~~v~~~~~~~~a~~-----~--~~~~~e 146 (189)
T cd04121 82 IILVYDITNR------WSFDGI-DRWIKEIDEHAPGV-PKILVGNRLHLAFKRQVATEQAQAYAER-----N--GMTFFE 146 (189)
T ss_pred EEEEEECcCH------HHHHHH-HHHHHHHHHhCCCC-CEEEEEECccchhccCCCHHHHHHHHHH-----c--CCEEEE
Confidence 9999999853 335433 2334444443 33 335567787751111 1122332221 1 345666
Q ss_pred eC-----CHHH-HHHHHHHHhhccccC
Q 003796 223 AD-----TKDE-LHKFLWLFKEQRLTV 243 (795)
Q Consensus 223 l~-----~~~E-~~nL~R~Is~~k~r~ 243 (795)
.| +-.| ...|++.|...+.+|
T Consensus 147 ~SAk~g~~V~~~F~~l~~~i~~~~~~~ 173 (189)
T cd04121 147 VSPLCNFNITESFTELARIVLMRHGRP 173 (189)
T ss_pred ecCCCCCCHHHHHHHHHHHHHHhcCCC
Confidence 66 3444 446777666555544
No 195
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=83.51 E-value=16 Score=35.40 Aligned_cols=102 Identities=11% Similarity=0.084 Sum_probs=55.1
Q ss_pred EEEEecCCCccChhhHHHHHHHhhccCC-----CCC-cceE---EEecCceeeEEEEeCCCC-ChHHHH-HHHhhhceEE
Q 003796 81 VIVLFGLSASVNLNSVREDLLRQLSSEG-----TGA-LSST---VSSSKYRLRTSVLQAPHG-DLVGCM-EMAKVADLVA 149 (795)
Q Consensus 81 iV~Vvg~~~~~~~~sl~~~lvk~~~~~~-----~~~-g~~t---v~~~r~k~Ritfie~~~~-dl~~~L-D~aKvADlVl 149 (795)
=|+|+|.++.+.. +| ++.|.... ... +..+ +.......++.|+..+.. ....+. ...+-||.+|
T Consensus 3 kv~~vG~~~vGKT-sl----i~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 77 (165)
T cd04140 3 RVVVFGAGGVGKS-SL----VLRFVKGTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFI 77 (165)
T ss_pred EEEEECCCCCCHH-HH----HHHHHhCCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEE
Confidence 3789999998886 66 44443221 111 2111 122333456778887632 233332 2456799999
Q ss_pred EeeeCCCccccccccccChH--HHHHHHHHHh---cCCCceEEEeccCCc
Q 003796 150 FVASASSFSEESMSYYIDSF--GNQCLSVFRS---LGLPSTAVLIRDLPT 194 (795)
Q Consensus 150 l~idas~g~~~~~~~~fe~e--g~e~L~~l~a---qG~P~vigVl~~Ld~ 194 (795)
+++|.+.. ..|+.. -.+.|..++. .++| ++.|.+..|.
T Consensus 78 lv~d~~~~------~s~~~~~~~~~~i~~~~~~~~~~~p-iilv~nK~Dl 120 (165)
T cd04140 78 LVYSVTSK------QSLEELKPIYELICEIKGNNIEKIP-IMLVGNKCDE 120 (165)
T ss_pred EEEECCCH------HHHHHHHHHHHHHHHHhcCCCCCCC-EEEEEECccc
Confidence 99998853 234321 1233433332 4566 5557787775
No 196
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=83.35 E-value=16 Score=35.41 Aligned_cols=102 Identities=11% Similarity=0.051 Sum_probs=57.0
Q ss_pred EEEEecCCCccChhhHHHHHHHhhccCC-CC-----Cc----ceEEEecCceeeEEEEeCCCC-ChHH-HHHHHhhhceE
Q 003796 81 VIVLFGLSASVNLNSVREDLLRQLSSEG-TG-----AL----SSTVSSSKYRLRTSVLQAPHG-DLVG-CMEMAKVADLV 148 (795)
Q Consensus 81 iV~Vvg~~~~~~~~sl~~~lvk~~~~~~-~~-----~g----~~tv~~~r~k~Ritfie~~~~-dl~~-~LD~aKvADlV 148 (795)
-|+|+|+++.+.. +| +..|.... .. .| ..++..+....++.++.++.. ...+ .-...+.||.+
T Consensus 2 ki~vvG~~~~GKT-sl----i~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ 76 (161)
T cd04117 2 RLLLIGDSGVGKT-CL----LCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGI 76 (161)
T ss_pred EEEEECcCCCCHH-HH----HHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEE
Confidence 3889999998886 66 43332211 11 12 223444444457778888632 2222 23456889999
Q ss_pred EEeeeCCCccccccccccChHHHHHHHHHHhcCC--CceEEEeccCCc
Q 003796 149 AFVASASSFSEESMSYYIDSFGNQCLSVFRSLGL--PSTAVLIRDLPT 194 (795)
Q Consensus 149 ll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~--P~vigVl~~Ld~ 194 (795)
|+++|.+.. ..|+.. ...+..+..+.. ..++.|.+..|.
T Consensus 77 i~v~d~~~~------~sf~~~-~~~~~~~~~~~~~~~~iilvgnK~Dl 117 (161)
T cd04117 77 FLVYDISSE------RSYQHI-MKWVSDVDEYAPEGVQKILIGNKADE 117 (161)
T ss_pred EEEEECCCH------HHHHHH-HHHHHHHHHhCCCCCeEEEEEECccc
Confidence 999998742 235433 334555544432 234555676664
No 197
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=83.34 E-value=16 Score=40.54 Aligned_cols=87 Identities=15% Similarity=0.210 Sum_probs=56.4
Q ss_pred EEEecCCCccChhhHHHHHHHhhccCCCCC--cce-EE--Eec---CceeeEEEEeCCC------CCh---HHHHHHHhh
Q 003796 82 IVLFGLSASVNLNSVREDLLRQLSSEGTGA--LSS-TV--SSS---KYRLRTSVLQAPH------GDL---VGCMEMAKV 144 (795)
Q Consensus 82 V~Vvg~~~~~~~~sl~~~lvk~~~~~~~~~--g~~-tv--~~~---r~k~Ritfie~~~------~dl---~~~LD~aKv 144 (795)
|++||+|..+.. +| +..+|+...+. -++ |+ +-+ -.-..|+++..|. ..- ..+|-++.-
T Consensus 66 v~lVGfPsvGKS-tL----L~~LTnt~seva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~R~ 140 (365)
T COG1163 66 VALVGFPSVGKS-TL----LNKLTNTKSEVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVARN 140 (365)
T ss_pred EEEEcCCCccHH-HH----HHHHhCCCccccccCceecccccceEeecCceEEEEcCcccccCcccCCCCcceeeeeecc
Confidence 889999988775 67 77787765443 121 11 111 1236788998872 111 348889999
Q ss_pred hceEEEeeeCCCccccccccccChHHHHHHHHHHhcCC
Q 003796 145 ADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGL 182 (795)
Q Consensus 145 ADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~ 182 (795)
||+|++++|+... .-.-.-++.-|..-|+
T Consensus 141 ADlIiiVld~~~~---------~~~~~~i~~ELe~~GI 169 (365)
T COG1163 141 ADLIIIVLDVFED---------PHHRDIIERELEDVGI 169 (365)
T ss_pred CCEEEEEEecCCC---------hhHHHHHHHHHHhcCe
Confidence 9999999999742 1123466777777775
No 198
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=83.17 E-value=9.2 Score=37.95 Aligned_cols=101 Identities=9% Similarity=0.058 Sum_probs=55.7
Q ss_pred EEEecCCCccChhhHHHHHHHhhccCCCC-----C-c---ceEEEec-CceeeEEEEeCCCC-ChHHHHH-HHhhhceEE
Q 003796 82 IVLFGLSASVNLNSVREDLLRQLSSEGTG-----A-L---SSTVSSS-KYRLRTSVLQAPHG-DLVGCME-MAKVADLVA 149 (795)
Q Consensus 82 V~Vvg~~~~~~~~sl~~~lvk~~~~~~~~-----~-g---~~tv~~~-r~k~Ritfie~~~~-dl~~~LD-~aKvADlVl 149 (795)
|+|+|.++.+.. +| +..|...... . + ..++... ...-.+.++..+.. ....+.. ..+-||.+|
T Consensus 3 i~vvG~~~vGKT-sl----i~~l~~~~~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii 77 (187)
T cd04132 3 IVVVGDGGCGKT-CL----LIVYSQGKFPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLL 77 (187)
T ss_pred EEEECCCCCCHH-HH----HHHHHhCcCCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEE
Confidence 789999998886 67 3333322111 1 1 1122222 33456778887622 2333333 457899999
Q ss_pred EeeeCCCccccccccccChHHHHHHHHHHh--cCCCceEEEeccCCc
Q 003796 150 FVASASSFSEESMSYYIDSFGNQCLSVFRS--LGLPSTAVLIRDLPT 194 (795)
Q Consensus 150 l~idas~g~~~~~~~~fe~eg~e~L~~l~a--qG~P~vigVl~~Ld~ 194 (795)
+++|.+.. ..|+.--...+..++. .+.| ++.|.++.|.
T Consensus 78 ~v~d~~~~------~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl 117 (187)
T cd04132 78 ICYAVDNP------TSLDNVEDKWFPEVNHFCPGTP-IMLVGLKTDL 117 (187)
T ss_pred EEEECCCH------HHHHHHHHHHHHHHHHhCCCCC-EEEEEeChhh
Confidence 99998842 2344333334444432 3444 5667787774
No 199
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=83.02 E-value=20 Score=39.42 Aligned_cols=203 Identities=15% Similarity=0.174 Sum_probs=127.4
Q ss_pred CCEEEEEecCC---CccChhhHHHHHHHhhc----cCCC-C------CcceEEEec-----CceeeEEEEeCCC-CC-hH
Q 003796 78 PPRVIVLFGLS---ASVNLNSVREDLLRQLS----SEGT-G------ALSSTVSSS-----KYRLRTSVLQAPH-GD-LV 136 (795)
Q Consensus 78 pP~iV~Vvg~~---~~~~~~sl~~~lvk~~~----~~~~-~------~g~~tv~~~-----r~k~Ritfie~~~-~d-l~ 136 (795)
|=.-|+.+|-- ++++...+...|.+.+. .++. . +--|||... --+|-+.++.||- .| +-
T Consensus 11 phVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDYvK 90 (394)
T COG0050 11 PHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYVK 90 (394)
T ss_pred CeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHHHHH
Confidence 33447777743 36666666444444321 1111 1 134555432 2368899999984 23 77
Q ss_pred HHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc-chhhhH-----HHHHHHHhhc
Q 003796 137 GCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT-DLKKRK-----DLKKMCISSL 210 (795)
Q Consensus 137 ~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~-~~Kk~~-----~~kK~lk~~f 210 (795)
.||--|--+|-.||+++|..| --..|.|=+-+.+--|+|.++.+|+..|. +...+. .++-.|..|
T Consensus 91 NMItgAaqmDgAILVVsA~dG--------pmPqTrEHiLlarqvGvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y- 161 (394)
T COG0050 91 NMITGAAQMDGAILVVAATDG--------PMPQTREHILLARQVGVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEY- 161 (394)
T ss_pred HHhhhHHhcCccEEEEEcCCC--------CCCcchhhhhhhhhcCCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHc-
Confidence 899999999999999999977 22356776667777899999999999886 212222 245555433
Q ss_pred ccccC-------CCCeeEEeCC----HHHHHHHHHHHhhccccCcccccCCCeEEEEeeEeccCCCCCCCceEEEEEEEe
Q 003796 211 TSEFP-------EDCKFYAADT----KDELHKFLWLFKEQRLTVPHWRNQRPFLMAQKVDVVADDCNSGKCTLLLHGYLR 279 (795)
Q Consensus 211 ~~ef~-------~~~Klf~l~~----~~E~~nL~R~Is~~k~r~l~WR~~rpYmLadr~e~~~~~~~~~~~~l~v~GyvR 279 (795)
.|+ .|++|-.|.+ ..-|..|+-.+..--|.|-. -...|+++.=.=-+.- ..+...++|-|-
T Consensus 162 --~f~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip~Per-~~dkPflmpvEdvfsI-----sgrgtvvtGrVe 233 (394)
T COG0050 162 --GFPGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIPTPER-DIDKPFLMPVEDVFSI-----SGRGTVVTGRVE 233 (394)
T ss_pred --CCCCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCCCCCC-cccccccccceeeEEE-----cCceeEEEEEEe
Confidence 344 3555555654 34466677766665555543 3456777752211111 136788999886
Q ss_pred CCCCCCCCeEEeCCCCce
Q 003796 280 AHCLSVNQLVHISGAGDF 297 (795)
Q Consensus 280 G~~l~~n~lVHIpG~GDf 297 (795)
-.-|++|.-|-|+|+.+-
T Consensus 234 RG~lkvg~eveivG~~~~ 251 (394)
T COG0050 234 RGILKVGEEVEIVGIKET 251 (394)
T ss_pred eeeeccCCEEEEeccccc
Confidence 556999999999998843
No 200
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=82.97 E-value=9.9 Score=36.11 Aligned_cols=61 Identities=18% Similarity=0.255 Sum_probs=37.8
Q ss_pred eeEEEEeCCC-CChHH-------HHHHH--hhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccC
Q 003796 123 LRTSVLQAPH-GDLVG-------CMEMA--KVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDL 192 (795)
Q Consensus 123 ~Ritfie~~~-~dl~~-------~LD~a--KvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~L 192 (795)
..+.|+..|- .++.. ..... +-+|+||+++|++.. +. ...++..+...|.| ++.|++.+
T Consensus 43 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~---------~~-~~~~~~~~~~~~~~-~iiv~NK~ 111 (158)
T cd01879 43 KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVNVVDATNL---------ER-NLYLTLQLLELGLP-VVVALNMI 111 (158)
T ss_pred eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEEEEeeCCcc---------hh-HHHHHHHHHHcCCC-EEEEEehh
Confidence 5788898873 12221 12222 489999999999852 22 22344455567876 56778887
Q ss_pred Cc
Q 003796 193 PT 194 (795)
Q Consensus 193 d~ 194 (795)
|.
T Consensus 112 Dl 113 (158)
T cd01879 112 DE 113 (158)
T ss_pred hh
Confidence 75
No 201
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=82.67 E-value=17 Score=34.86 Aligned_cols=104 Identities=6% Similarity=0.020 Sum_probs=54.6
Q ss_pred EEEecCCCccChhhHHHHHHHh---hcc-CCCCCcce----EEEe-cCceeeEEEEeCCCCC-hHHHH-HHHhhhceEEE
Q 003796 82 IVLFGLSASVNLNSVREDLLRQ---LSS-EGTGALSS----TVSS-SKYRLRTSVLQAPHGD-LVGCM-EMAKVADLVAF 150 (795)
Q Consensus 82 V~Vvg~~~~~~~~sl~~~lvk~---~~~-~~~~~g~~----tv~~-~r~k~Ritfie~~~~d-l~~~L-D~aKvADlVll 150 (795)
|+|+|.++++.. +|++.+... +.. +..+.|+- ++.. +..+..+.++.++-.. ...|+ -..+-||.+|+
T Consensus 3 i~vvG~~~~GKt-sl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii~ 81 (164)
T cd04101 3 CAVVGDPAVGKT-AFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFIL 81 (164)
T ss_pred EEEECCCCCCHH-HHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEEE
Confidence 789999998886 673332211 111 11111321 2222 2345677788876222 23332 33455999999
Q ss_pred eeeCCCccccccccccChHHHHHHHHHHhc--CCCceEEEeccCCc
Q 003796 151 VASASSFSEESMSYYIDSFGNQCLSVFRSL--GLPSTAVLIRDLPT 194 (795)
Q Consensus 151 ~idas~g~~~~~~~~fe~eg~e~L~~l~aq--G~P~vigVl~~Ld~ 194 (795)
|+|.+.. ..|+ +-...+..+..+ +. .++.|+++.|.
T Consensus 82 v~d~~~~------~s~~-~~~~~~~~~~~~~~~~-p~ilv~nK~Dl 119 (164)
T cd04101 82 VYDVSNK------ASFE-NCSRWVNKVRTASKHM-PGVLVGNKMDL 119 (164)
T ss_pred EEECcCH------HHHH-HHHHHHHHHHHhCCCC-CEEEEEECccc
Confidence 9998842 1232 223444554443 43 44556777775
No 202
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=82.13 E-value=39 Score=37.52 Aligned_cols=160 Identities=9% Similarity=0.121 Sum_probs=79.5
Q ss_pred CCCCEEEEEecCCCccChhhHHHHHHHhhc-cCC--CCC--cceEEEecCceeeEEEEeCCC-CCh----HHHHHHHhh-
Q 003796 76 ASPPRVIVLFGLSASVNLNSVREDLLRQLS-SEG--TGA--LSSTVSSSKYRLRTSVLQAPH-GDL----VGCMEMAKV- 144 (795)
Q Consensus 76 ~~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~-~~~--~~~--g~~tv~~~r~k~Ritfie~~~-~dl----~~~LD~aKv- 144 (795)
+....-|+|+|-++.+.. ++++.|+.... ..+ ... .+.++.......++++|..|- .+. ...++.+|.
T Consensus 35 ~~~~~rIllvGktGVGKS-SliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~ 113 (313)
T TIGR00991 35 DVSSLTILVMGKGGVGKS-STVNSIIGERIATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEGGYINDQAVNIIKRF 113 (313)
T ss_pred cccceEEEEECCCCCCHH-HHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEECCCCCchHHHHHHHHHHHHHH
Confidence 445667899999998875 66444443211 011 111 222222111246899998874 111 124555553
Q ss_pred -----hceEEEeeeCCCccccccccccChHHHHHHHHHHhc-C---CCceEEEeccCCcchhhhHHHHHHHHhhcccccC
Q 003796 145 -----ADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSL-G---LPSTAVLIRDLPTDLKKRKDLKKMCISSLTSEFP 215 (795)
Q Consensus 145 -----ADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aq-G---~P~vigVl~~Ld~~~Kk~~~~kK~lk~~f~~ef~ 215 (795)
.|+||++.+.... -++..-..+|..|+.. | .-.+|.|+||-+...-.- ..+..|+.
T Consensus 114 l~~~g~DvVLyV~rLD~~-------R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~pd~----~~~e~fv~---- 178 (313)
T TIGR00991 114 LLGKTIDVLLYVDRLDAY-------RVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPPDG----LEYNDFFS---- 178 (313)
T ss_pred hhcCCCCEEEEEeccCcc-------cCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCCCC----CCHHHHHH----
Confidence 8899999543210 1333333444444432 3 346788899976300000 01111111
Q ss_pred CCCeeEEeCCHHHHHHHHHHHhhccccCcccccCCCeEEEEeeEe
Q 003796 216 EDCKFYAADTKDELHKFLWLFKEQRLTVPHWRNQRPFLMAQKVDV 260 (795)
Q Consensus 216 ~~~Klf~l~~~~E~~nL~R~Is~~k~r~l~WR~~rpYmLadr~e~ 260 (795)
.....+.+++|..+..+.. ..-.-..|.+|+|+..-
T Consensus 179 --------~~~~~lq~~i~~~~~~~~~-~~~~~~~pv~lven~~~ 214 (313)
T TIGR00991 179 --------KRSEALLRVIHSGAGLKKR-DYQDFPIPVALVENSGR 214 (313)
T ss_pred --------hcHHHHHHHHHHHhccccc-ccccccCCEEEEecCCc
Confidence 1255567888877664432 11123457777777543
No 203
>PLN00223 ADP-ribosylation factor; Provisional
Probab=81.89 E-value=10 Score=38.00 Aligned_cols=100 Identities=14% Similarity=0.090 Sum_probs=57.9
Q ss_pred EEEEecCCCccChhhHHHHHHHhhccC-C----CCCcce--EEEecCceeeEEEEeCCCCC--hHHHHH-HHhhhceEEE
Q 003796 81 VIVLFGLSASVNLNSVREDLLRQLSSE-G----TGALSS--TVSSSKYRLRTSVLQAPHGD--LVGCME-MAKVADLVAF 150 (795)
Q Consensus 81 iV~Vvg~~~~~~~~sl~~~lvk~~~~~-~----~~~g~~--tv~~~r~k~Ritfie~~~~d--l~~~LD-~aKvADlVll 150 (795)
=|+++|+++++.. +| +..|+.. . .+.|.. ++... ..++.++.++ .. +..+.. ..+-||.+|+
T Consensus 19 ki~ivG~~~~GKT-sl----~~~l~~~~~~~~~pt~g~~~~~~~~~--~~~~~i~D~~-Gq~~~~~~~~~~~~~a~~iI~ 90 (181)
T PLN00223 19 RILMVGLDAAGKT-TI----LYKLKLGEIVTTIPTIGFNVETVEYK--NISFTVWDVG-GQDKIRPLWRHYFQNTQGLIF 90 (181)
T ss_pred EEEEECCCCCCHH-HH----HHHHccCCCccccCCcceeEEEEEEC--CEEEEEEECC-CCHHHHHHHHHHhccCCEEEE
Confidence 4899999998886 66 4444321 1 111321 22222 3567778776 43 334433 3577999999
Q ss_pred eeeCCCccccccccccChHHHHHHHHHHhcCCC--ceEEEeccCCc
Q 003796 151 VASASSFSEESMSYYIDSFGNQCLSVFRSLGLP--STAVLIRDLPT 194 (795)
Q Consensus 151 ~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P--~vigVl~~Ld~ 194 (795)
|+|++.. ..|+..-.++-..++...++ .++.|.+..|.
T Consensus 91 V~D~s~~------~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl 130 (181)
T PLN00223 91 VVDSNDR------DRVVEARDELHRMLNEDELRDAVLLVFANKQDL 130 (181)
T ss_pred EEeCCcH------HHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCC
Confidence 9999852 33555444555555444333 34556788775
No 204
>COG1084 Predicted GTPase [General function prediction only]
Probab=81.84 E-value=10 Score=41.99 Aligned_cols=107 Identities=19% Similarity=0.285 Sum_probs=69.0
Q ss_pred CCCEEEEEecCCCccChhhHHHHHHHhhccCCCCC--cceE---EEec---CceeeEEEEeCCC---------CC--hHH
Q 003796 77 SPPRVIVLFGLSASVNLNSVREDLLRQLSSEGTGA--LSST---VSSS---KYRLRTSVLQAPH---------GD--LVG 137 (795)
Q Consensus 77 ~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~~--g~~t---v~~~---r~k~Ritfie~~~---------~d--l~~ 137 (795)
.-|- |+|-|+|+.+.+ || ++.+|.-..+. -|.| |.+| +.--|+++|.-|- |+ .++
T Consensus 167 ~~pT-ivVaG~PNVGKS-Sl----v~~lT~AkpEvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qA 240 (346)
T COG1084 167 DLPT-IVVAGYPNVGKS-SL----VRKLTTAKPEVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQA 240 (346)
T ss_pred CCCe-EEEecCCCCcHH-HH----HHHHhcCCCccCCCCccccceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHH
Confidence 3444 567788888775 78 89998876553 2333 2222 2224999998763 33 367
Q ss_pred HHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc
Q 003796 138 CMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT 194 (795)
Q Consensus 138 ~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~ 194 (795)
++-+.=++|+|||++|.|..+- +.+|++ ..++.-+...=-+.++.|++.+|.
T Consensus 241 i~AL~hl~~~IlF~~D~Se~cg----y~lE~Q-~~L~~eIk~~f~~p~v~V~nK~D~ 292 (346)
T COG1084 241 ILALRHLAGVILFLFDPSETCG----YSLEEQ-ISLLEEIKELFKAPIVVVINKIDI 292 (346)
T ss_pred HHHHHHhcCeEEEEEcCccccC----CCHHHH-HHHHHHHHHhcCCCeEEEEecccc
Confidence 8889999999999999884310 233444 344444443322678899999985
No 205
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=80.76 E-value=21 Score=34.92 Aligned_cols=101 Identities=12% Similarity=0.045 Sum_probs=57.7
Q ss_pred EEEecCCCccChhhHHHHHHHhhcc-CCCCC----c----ceEEEecCceeeEEEEeCCCC-ChHHHHH-HHhhhceEEE
Q 003796 82 IVLFGLSASVNLNSVREDLLRQLSS-EGTGA----L----SSTVSSSKYRLRTSVLQAPHG-DLVGCME-MAKVADLVAF 150 (795)
Q Consensus 82 V~Vvg~~~~~~~~sl~~~lvk~~~~-~~~~~----g----~~tv~~~r~k~Ritfie~~~~-dl~~~LD-~aKvADlVll 150 (795)
|+++|.++.+.. +| +..+.. .-... + ..++..+....++.++.++-. .+..+.. .++-||.+|+
T Consensus 3 ~~i~G~~~~GKt-sl----~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~ 77 (173)
T cd04130 3 CVLVGDGAVGKT-SL----IVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLL 77 (173)
T ss_pred EEEECCCCCCHH-HH----HHHHHhCCCCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEE
Confidence 789999998876 66 443322 11111 1 123344444578888988731 2333322 3467999999
Q ss_pred eeeCCCccccccccccChHHHHHHHHHHhc--CCCceEEEeccCCc
Q 003796 151 VASASSFSEESMSYYIDSFGNQCLSVFRSL--GLPSTAVLIRDLPT 194 (795)
Q Consensus 151 ~idas~g~~~~~~~~fe~eg~e~L~~l~aq--G~P~vigVl~~Ld~ 194 (795)
++|.+.- ..|+.-...++..++.. ++| ++.|.++.|.
T Consensus 78 v~d~~~~------~sf~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl 116 (173)
T cd04130 78 CFSVVNP------SSFQNISEKWIPEIRKHNPKAP-IILVGTQADL 116 (173)
T ss_pred EEECCCH------HHHHHHHHHHHHHHHhhCCCCC-EEEEeeChhh
Confidence 9998842 23544333456555542 443 4666787774
No 206
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=79.75 E-value=26 Score=33.57 Aligned_cols=105 Identities=12% Similarity=0.053 Sum_probs=60.8
Q ss_pred EEEecCCCccChhhHHHHHHHhh-cc-CCCCC----cceEEEecCceeeEEEEeCCCC-ChHHHHHH-HhhhceEEEeee
Q 003796 82 IVLFGLSASVNLNSVREDLLRQL-SS-EGTGA----LSSTVSSSKYRLRTSVLQAPHG-DLVGCMEM-AKVADLVAFVAS 153 (795)
Q Consensus 82 V~Vvg~~~~~~~~sl~~~lvk~~-~~-~~~~~----g~~tv~~~r~k~Ritfie~~~~-dl~~~LD~-aKvADlVll~id 153 (795)
|+|+|.++++.. +|++.++..- .. +..+. ...++......-++.+++.+.. ....+.+. .+=+|.+|+++|
T Consensus 2 i~vvG~~~vGKt-sl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 2 IVVVGDSGVGKT-SLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEESTTSSHH-HHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred EEEECCCCCCHH-HHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 789999998875 6733333211 00 11111 3445555556778899887532 34444433 566999999999
Q ss_pred CCCccccccccccChHHHHHHHHHHhcCC--CceEEEeccCCc
Q 003796 154 ASSFSEESMSYYIDSFGNQCLSVFRSLGL--PSTAVLIRDLPT 194 (795)
Q Consensus 154 as~g~~~~~~~~fe~eg~e~L~~l~aqG~--P~vigVl~~Ld~ 194 (795)
.+.. ..|+.-. .++..++...- +.++.|.++.|.
T Consensus 81 ~~~~------~S~~~~~-~~~~~i~~~~~~~~~iivvg~K~D~ 116 (162)
T PF00071_consen 81 VTDE------ESFENLK-KWLEEIQKYKPEDIPIIVVGNKSDL 116 (162)
T ss_dssp TTBH------HHHHTHH-HHHHHHHHHSTTTSEEEEEEETTTG
T ss_pred cccc------ccccccc-cccccccccccccccceeeeccccc
Confidence 8742 3455433 55555554443 345555678775
No 207
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=79.59 E-value=17 Score=35.58 Aligned_cols=105 Identities=9% Similarity=0.031 Sum_probs=55.2
Q ss_pred EEEEecCCCccChhhHHHHHHHh-hcc-CCCCCc----ceEEEecCceeeEEEEeCCCCC-hHHHH-HHHhhhceEEEee
Q 003796 81 VIVLFGLSASVNLNSVREDLLRQ-LSS-EGTGAL----SSTVSSSKYRLRTSVLQAPHGD-LVGCM-EMAKVADLVAFVA 152 (795)
Q Consensus 81 iV~Vvg~~~~~~~~sl~~~lvk~-~~~-~~~~~g----~~tv~~~r~k~Ritfie~~~~d-l~~~L-D~aKvADlVll~i 152 (795)
-|+|+|.++++.. +|++.++.. +.. +..+.| .+++...+....+.++.++..+ ...+. -...-||.+|+|+
T Consensus 2 ki~vvG~~~vGKT-sli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 2 KLVLVGDGGTGKT-TFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred EEEEECCCCCCHH-HHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 3889999998886 774333321 111 111112 2222223334567777775322 12222 2345699999999
Q ss_pred eCCCccccccccccChHHHHHHHHHHhc--CCCceEEEeccCCc
Q 003796 153 SASSFSEESMSYYIDSFGNQCLSVFRSL--GLPSTAVLIRDLPT 194 (795)
Q Consensus 153 das~g~~~~~~~~fe~eg~e~L~~l~aq--G~P~vigVl~~Ld~ 194 (795)
|.+.+ ..|+.- ..+++.++.+ +.| ++.|.+..|.
T Consensus 81 d~~~~------~s~~~~-~~~~~~i~~~~~~~p-iiiv~nK~Dl 116 (166)
T cd00877 81 DVTSR------VTYKNV-PNWHRDLVRVCGNIP-IVLCGNKVDI 116 (166)
T ss_pred ECCCH------HHHHHH-HHHHHHHHHhCCCCc-EEEEEEchhc
Confidence 99854 234322 2344444433 344 5666777775
No 208
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=79.58 E-value=32 Score=34.08 Aligned_cols=101 Identities=12% Similarity=0.047 Sum_probs=54.8
Q ss_pred EEEecCCCccChhhHHHHHHHhhc-cCCCCC-----cc---eEEEecCceeeEEEEeCCCCChH-HHHH-HHhhhceEEE
Q 003796 82 IVLFGLSASVNLNSVREDLLRQLS-SEGTGA-----LS---STVSSSKYRLRTSVLQAPHGDLV-GCME-MAKVADLVAF 150 (795)
Q Consensus 82 V~Vvg~~~~~~~~sl~~~lvk~~~-~~~~~~-----g~---~tv~~~r~k~Ritfie~~~~dl~-~~LD-~aKvADlVll 150 (795)
|+|+|.++.+.. +| +..|. +.-... +. .++.......+++++.++-.+-. .+.. ..+-||.+||
T Consensus 4 i~iiG~~~vGKS-sl----i~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~il 78 (174)
T cd01871 4 CVVVGDGAVGKT-CL----LISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLI 78 (174)
T ss_pred EEEECCCCCCHH-HH----HHHHhcCCCCCcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEE
Confidence 789999998876 66 43332 211111 11 12333444567888888633322 2222 2355999999
Q ss_pred eeeCCCccccccccccChHHHHHHHHHHhc--CCCceEEEeccCCc
Q 003796 151 VASASSFSEESMSYYIDSFGNQCLSVFRSL--GLPSTAVLIRDLPT 194 (795)
Q Consensus 151 ~idas~g~~~~~~~~fe~eg~e~L~~l~aq--G~P~vigVl~~Ld~ 194 (795)
|+|.+.- ..|+.-....+..++.+ .+| ++.|.++.|.
T Consensus 79 v~d~~~~------~sf~~~~~~~~~~~~~~~~~~p-iilvgnK~Dl 117 (174)
T cd01871 79 CFSLVSP------ASFENVRAKWYPEVRHHCPNTP-IILVGTKLDL 117 (174)
T ss_pred EEECCCH------HHHHHHHHHHHHHHHHhCCCCC-EEEEeeChhh
Confidence 9999742 23444322334434333 333 4446777774
No 209
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=79.43 E-value=15 Score=36.62 Aligned_cols=104 Identities=6% Similarity=-0.022 Sum_probs=56.5
Q ss_pred EEEecCCCccChhhHHHHHHHh-hcc--CCCCCcc----eEEEecCceeeEEEEeCCCC-ChHHHHH-HHhhhceEEEee
Q 003796 82 IVLFGLSASVNLNSVREDLLRQ-LSS--EGTGALS----STVSSSKYRLRTSVLQAPHG-DLVGCME-MAKVADLVAFVA 152 (795)
Q Consensus 82 V~Vvg~~~~~~~~sl~~~lvk~-~~~--~~~~~g~----~tv~~~r~k~Ritfie~~~~-dl~~~LD-~aKvADlVll~i 152 (795)
|+|+|.++.+.. +|++.++.. +.. +..+.|. ..+..+...-++.|+.++.. ....+.. ..+-||.+|||+
T Consensus 3 i~vvG~~~vGKS-sLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv~ 81 (193)
T cd04118 3 VVMLGKESVGKT-SLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVCY 81 (193)
T ss_pred EEEECCCCCCHH-HHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEEE
Confidence 789999998876 673332221 100 1111121 12344444556778877632 2333332 234699999999
Q ss_pred eCCCccccccccccChHHHHHHHHHHhc--CCCceEEEeccCCc
Q 003796 153 SASSFSEESMSYYIDSFGNQCLSVFRSL--GLPSTAVLIRDLPT 194 (795)
Q Consensus 153 das~g~~~~~~~~fe~eg~e~L~~l~aq--G~P~vigVl~~Ld~ 194 (795)
|.+.. ..|+.- ..++..++.. +.| ++.|.+..|.
T Consensus 82 d~~~~------~s~~~~-~~~~~~i~~~~~~~p-iilv~nK~Dl 117 (193)
T cd04118 82 DLTDS------SSFERA-KFWVKELQNLEEHCK-IYLCGTKSDL 117 (193)
T ss_pred ECCCH------HHHHHH-HHHHHHHHhcCCCCC-EEEEEEcccc
Confidence 98742 224332 3455555544 554 6777787774
No 210
>PLN03110 Rab GTPase; Provisional
Probab=79.41 E-value=22 Score=36.67 Aligned_cols=101 Identities=12% Similarity=0.058 Sum_probs=57.5
Q ss_pred EEEEecCCCccChhhHHHHHHHhhccCC------CCCc----ceEEEecCceeeEEEEeCCC-CChHHHHH-HHhhhceE
Q 003796 81 VIVLFGLSASVNLNSVREDLLRQLSSEG------TGAL----SSTVSSSKYRLRTSVLQAPH-GDLVGCME-MAKVADLV 148 (795)
Q Consensus 81 iV~Vvg~~~~~~~~sl~~~lvk~~~~~~------~~~g----~~tv~~~r~k~Ritfie~~~-~dl~~~LD-~aKvADlV 148 (795)
=|+|+|.++.+.. +| +..|.... .+.| ..++..+.....+.++..+. ..+.++.. ..+-||.+
T Consensus 14 Ki~ivG~~~vGKS-tL----i~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~ 88 (216)
T PLN03110 14 KIVLIGDSGVGKS-NI----LSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGA 88 (216)
T ss_pred EEEEECCCCCCHH-HH----HHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEE
Confidence 3899999998886 67 43333221 1112 23444444445777777752 22445444 36889999
Q ss_pred EEeeeCCCccccccccccChHHHHHHHHHHhc---CCCceEEEeccCCc
Q 003796 149 AFVASASSFSEESMSYYIDSFGNQCLSVFRSL---GLPSTAVLIRDLPT 194 (795)
Q Consensus 149 ll~idas~g~~~~~~~~fe~eg~e~L~~l~aq---G~P~vigVl~~Ld~ 194 (795)
||++|.+.. ..|+. -...|+.++.+ ++| ++.|.+..|.
T Consensus 89 ilv~d~~~~------~s~~~-~~~~~~~~~~~~~~~~p-iiiv~nK~Dl 129 (216)
T PLN03110 89 LLVYDITKR------QTFDN-VQRWLRELRDHADSNIV-IMMAGNKSDL 129 (216)
T ss_pred EEEEECCCh------HHHHH-HHHHHHHHHHhCCCCCe-EEEEEEChhc
Confidence 999998742 22432 23455555554 343 4555677664
No 211
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=79.00 E-value=12 Score=36.50 Aligned_cols=101 Identities=10% Similarity=0.050 Sum_probs=57.4
Q ss_pred EEEecCCCccChhhHHHHHHHhhccCCCCC---------cceEEEecCceeeEEEEeCCCCC-hHHHHH-HHhhhceEEE
Q 003796 82 IVLFGLSASVNLNSVREDLLRQLSSEGTGA---------LSSTVSSSKYRLRTSVLQAPHGD-LVGCME-MAKVADLVAF 150 (795)
Q Consensus 82 V~Vvg~~~~~~~~sl~~~lvk~~~~~~~~~---------g~~tv~~~r~k~Ritfie~~~~d-l~~~LD-~aKvADlVll 150 (795)
|+|+|.++++.. +| +..|....... -..++..+...-.+.++..+... ...+.. ..+-||.+||
T Consensus 1 i~i~G~~~vGKT-sl----i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~il 75 (174)
T smart00174 1 LVVVGDGAVGKT-CL----LISYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLI 75 (174)
T ss_pred CEEECCCCCCHH-HH----HHHHHhCCCCCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEE
Confidence 589999998886 67 44443322111 11123333334467888776322 222322 3467999999
Q ss_pred eeeCCCccccccccccChHHHHHHHHHHhc--CCCceEEEeccCCc
Q 003796 151 VASASSFSEESMSYYIDSFGNQCLSVFRSL--GLPSTAVLIRDLPT 194 (795)
Q Consensus 151 ~idas~g~~~~~~~~fe~eg~e~L~~l~aq--G~P~vigVl~~Ld~ 194 (795)
++|.+.. ..|+.-...++..++.+ +. .++.|.++.|.
T Consensus 76 v~d~~~~------~s~~~~~~~~~~~i~~~~~~~-piilv~nK~Dl 114 (174)
T smart00174 76 CFSVDSP------ASFENVKEKWYPEVKHFCPNT-PIILVGTKLDL 114 (174)
T ss_pred EEECCCH------HHHHHHHHHHHHHHHhhCCCC-CEEEEecChhh
Confidence 9998742 33554444456666554 33 35666787775
No 212
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=78.66 E-value=64 Score=34.95 Aligned_cols=69 Identities=9% Similarity=0.158 Sum_probs=45.0
Q ss_pred hceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc-chhhhHHHHHHHHhhcccccCCCCeeEEe
Q 003796 145 ADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT-DLKKRKDLKKMCISSLTSEFPEDCKFYAA 223 (795)
Q Consensus 145 ADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~-~~Kk~~~~kK~lk~~f~~ef~~~~Klf~l 223 (795)
+|++|++++++. .++..+-.++|..|.. ++| ++.|++..|. ....+...|+.++..+.. .+.++|.+
T Consensus 115 vh~~ly~i~~~~-------~~l~~~D~~~lk~l~~-~v~-vi~VinK~D~l~~~e~~~~k~~i~~~l~~---~~i~~~~~ 182 (276)
T cd01850 115 VHACLYFIEPTG-------HGLKPLDIEFMKRLSK-RVN-IIPVIAKADTLTPEELKEFKQRIMEDIEE---HNIKIYKF 182 (276)
T ss_pred eEEEEEEEeCCC-------CCCCHHHHHHHHHHhc-cCC-EEEEEECCCcCCHHHHHHHHHHHHHHHHH---cCCceECC
Confidence 689999999873 2355566888888874 665 7789999885 111233345555544443 26788877
Q ss_pred CC
Q 003796 224 DT 225 (795)
Q Consensus 224 ~~ 225 (795)
..
T Consensus 183 ~~ 184 (276)
T cd01850 183 PE 184 (276)
T ss_pred CC
Confidence 64
No 213
>PLN03108 Rab family protein; Provisional
Probab=78.54 E-value=35 Score=34.98 Aligned_cols=72 Identities=7% Similarity=0.048 Sum_probs=42.7
Q ss_pred EEEEEecCCCccChhhHHHHHHHhhccCC------CCCc----ceEEEecCceeeEEEEeCCCCC-hHH-HHHHHhhhce
Q 003796 80 RVIVLFGLSASVNLNSVREDLLRQLSSEG------TGAL----SSTVSSSKYRLRTSVLQAPHGD-LVG-CMEMAKVADL 147 (795)
Q Consensus 80 ~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~------~~~g----~~tv~~~r~k~Ritfie~~~~d-l~~-~LD~aKvADl 147 (795)
+=|+|+|+++.+.. +| +..|+... .+.| ...+.......+++++..+... +.. .....+-||.
T Consensus 7 ~kivivG~~gvGKS-tL----i~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~ 81 (210)
T PLN03108 7 FKYIIIGDTGVGKS-CL----LLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAG 81 (210)
T ss_pred eEEEEECCCCCCHH-HH----HHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCE
Confidence 34899999998886 67 44443321 1112 2223334334567777765222 222 2355678999
Q ss_pred EEEeeeCCC
Q 003796 148 VAFVASASS 156 (795)
Q Consensus 148 Vll~idas~ 156 (795)
+||++|.+.
T Consensus 82 ~vlv~D~~~ 90 (210)
T PLN03108 82 ALLVYDITR 90 (210)
T ss_pred EEEEEECCc
Confidence 999999974
No 214
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=78.50 E-value=10 Score=36.97 Aligned_cols=48 Identities=8% Similarity=0.030 Sum_probs=31.4
Q ss_pred HHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHh--cCCCceEEEeccCCc
Q 003796 138 CMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRS--LGLPSTAVLIRDLPT 194 (795)
Q Consensus 138 ~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~a--qG~P~vigVl~~Ld~ 194 (795)
+..+.+=||+||+|+|++.. +...-..++..|.. .|.| ++.|++..|.
T Consensus 2 ~~~~l~~aD~il~VvD~~~p--------~~~~~~~i~~~l~~~~~~~p-~ilVlNKiDl 51 (157)
T cd01858 2 LYKVIDSSDVVIQVLDARDP--------MGTRCKHVEEYLKKEKPHKH-LIFVLNKCDL 51 (157)
T ss_pred hhHhhhhCCEEEEEEECCCC--------ccccCHHHHHHHHhccCCCC-EEEEEEchhc
Confidence 34677889999999999853 22222344444443 3455 6788988886
No 215
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=78.39 E-value=25 Score=36.08 Aligned_cols=101 Identities=17% Similarity=0.157 Sum_probs=55.2
Q ss_pred EEEecCCCccChhhHHHHHHHhhccCC------CCCc----ceEEEec-CceeeEEEEeCCCCCh-HHHHH-HHhhhceE
Q 003796 82 IVLFGLSASVNLNSVREDLLRQLSSEG------TGAL----SSTVSSS-KYRLRTSVLQAPHGDL-VGCME-MAKVADLV 148 (795)
Q Consensus 82 V~Vvg~~~~~~~~sl~~~lvk~~~~~~------~~~g----~~tv~~~-r~k~Ritfie~~~~dl-~~~LD-~aKvADlV 148 (795)
|+|+|.++.+.. +| +..|.... .+.| ...+..+ ....++.++.++.... ..+++ .++-||.+
T Consensus 3 i~ivG~~~vGKS-sL----i~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~i 77 (215)
T cd04109 3 IVVLGDGAVGKT-SL----CRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAV 77 (215)
T ss_pred EEEECcCCCCHH-HH----HHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEE
Confidence 789999998886 67 44443222 1112 1122322 2346778888863222 23333 35679999
Q ss_pred EEeeeCCCccccccccccChHHHHHHHHHHhcC-----CCceEEEeccCCc
Q 003796 149 AFVASASSFSEESMSYYIDSFGNQCLSVFRSLG-----LPSTAVLIRDLPT 194 (795)
Q Consensus 149 ll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG-----~P~vigVl~~Ld~ 194 (795)
|||+|.+.. +.|+.- .+.+..|+... -|.++.|.+..|.
T Consensus 78 ilV~D~t~~------~s~~~~-~~w~~~l~~~~~~~~~~~piilVgNK~DL 121 (215)
T cd04109 78 FLVYDVTNS------QSFENL-EDWYSMVRKVLKSSETQPLVVLVGNKTDL 121 (215)
T ss_pred EEEEECCCH------HHHHHH-HHHHHHHHHhccccCCCceEEEEEECccc
Confidence 999998842 223321 22333333321 1346677888885
No 216
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=77.93 E-value=12 Score=36.81 Aligned_cols=63 Identities=14% Similarity=0.205 Sum_probs=47.4
Q ss_pred eEEEEeCCCCChHHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc
Q 003796 124 RTSVLQAPHGDLVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT 194 (795)
Q Consensus 124 Ritfie~~~~dl~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~ 194 (795)
.+.+|.||+..-...+.+...||.||++++++.. --.....++..++..+.+....|++..+.
T Consensus 64 d~viiD~p~~~~~~~~~~l~~ad~viiv~~~~~~--------s~~~~~~~~~~~~~~~~~~~~iv~N~~~~ 126 (179)
T cd02036 64 DYILIDSPAGIERGFITAIAPADEALLVTTPEIS--------SLRDADRVKGLLEALGIKVVGVIVNRVRP 126 (179)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCcEEEEeCCCcc--------hHHHHHHHHHHHHHcCCceEEEEEeCCcc
Confidence 7889999855444567778999999999998753 12245678888888888877777888775
No 217
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=77.60 E-value=31 Score=36.86 Aligned_cols=110 Identities=15% Similarity=0.218 Sum_probs=60.0
Q ss_pred CCCCEEEEEecCCCccChhhHHHHHHHhhccCCCCC-cceEEE-----ecCceeeEEEEeCCC-CCh-------HHHHHH
Q 003796 76 ASPPRVIVLFGLSASVNLNSVREDLLRQLSSEGTGA-LSSTVS-----SSKYRLRTSVLQAPH-GDL-------VGCMEM 141 (795)
Q Consensus 76 ~~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~~-g~~tv~-----~~r~k~Ritfie~~~-~dl-------~~~LD~ 141 (795)
..+|.-|+|+|.++.+.. +|++.|+..-.. .... .+.|.. ......+++||..|- .+- ..++..
T Consensus 28 ~~~~~~IllvG~tGvGKS-SliNaLlg~~~~-~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~ 105 (249)
T cd01853 28 LDFSLTILVLGKTGVGKS-STINSIFGERKA-ATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSS 105 (249)
T ss_pred ccCCeEEEEECCCCCcHH-HHHHHHhCCCCc-ccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHH
Confidence 567888999999998885 674444432100 0011 111211 111125788998873 111 012222
Q ss_pred Hh------hhceEEEeeeCCCccccccccccChHHHHHHHHHHh-cC---CCceEEEeccCCc
Q 003796 142 AK------VADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRS-LG---LPSTAVLIRDLPT 194 (795)
Q Consensus 142 aK------vADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~a-qG---~P~vigVl~~Ld~ 194 (795)
.+ -.|+||++...+. ..++..-..++..|+. -| ..+++.|+||.|.
T Consensus 106 I~~~l~~~~idvIL~V~rlD~-------~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~ 161 (249)
T cd01853 106 IKRYLKKKTPDVVLYVDRLDM-------YRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAAS 161 (249)
T ss_pred HHHHHhccCCCEEEEEEcCCC-------CCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCcc
Confidence 22 3688888875542 1255555566666654 35 2478889998774
No 218
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=75.50 E-value=28 Score=33.50 Aligned_cols=103 Identities=12% Similarity=0.070 Sum_probs=57.3
Q ss_pred EEEEEecCCCccChhhHHHHHHHhhc-cCC-----CCCcc---eEEEecCceeeEEEEeCCC-CChHHHHHH-HhhhceE
Q 003796 80 RVIVLFGLSASVNLNSVREDLLRQLS-SEG-----TGALS---STVSSSKYRLRTSVLQAPH-GDLVGCMEM-AKVADLV 148 (795)
Q Consensus 80 ~iV~Vvg~~~~~~~~sl~~~lvk~~~-~~~-----~~~g~---~tv~~~r~k~Ritfie~~~-~dl~~~LD~-aKvADlV 148 (795)
.-|+|+|.++.+.. +| +..|. +.- .+.+. .++.....+.++.++..+. ..+.++.+. .+-||.+
T Consensus 2 ~ki~~~G~~~~GKT-sl----i~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 76 (164)
T cd04175 2 YKLVVLGSGGVGKS-AL----TVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGF 76 (164)
T ss_pred cEEEEECCCCCCHH-HH----HHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEE
Confidence 34889999998886 56 33332 211 11111 2333333355677787752 234455443 6789999
Q ss_pred EEeeeCCCccccccccccCh---HHHHHHHHHHhcCCCceEEEeccCCc
Q 003796 149 AFVASASSFSEESMSYYIDS---FGNQCLSVFRSLGLPSTAVLIRDLPT 194 (795)
Q Consensus 149 ll~idas~g~~~~~~~~fe~---eg~e~L~~l~aqG~P~vigVl~~Ld~ 194 (795)
||++|.+.. ..|+. +-.++++.....++| ++.|.+..|.
T Consensus 77 ilv~d~~~~------~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl 118 (164)
T cd04175 77 VLVYSITAQ------STFNDLQDLREQILRVKDTEDVP-MILVGNKCDL 118 (164)
T ss_pred EEEEECCCH------HHHHHHHHHHHHHHHhcCCCCCC-EEEEEECCcc
Confidence 999998743 23443 223333333334555 5666777775
No 219
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=75.27 E-value=42 Score=33.58 Aligned_cols=100 Identities=11% Similarity=0.059 Sum_probs=54.3
Q ss_pred EEEecCCCccChhhHHHHHHHhhccCCC------CCc---ceEEEecCceeeEEEEeCCCC-ChHHHHH-HHhhhceEEE
Q 003796 82 IVLFGLSASVNLNSVREDLLRQLSSEGT------GAL---SSTVSSSKYRLRTSVLQAPHG-DLVGCME-MAKVADLVAF 150 (795)
Q Consensus 82 V~Vvg~~~~~~~~sl~~~lvk~~~~~~~------~~g---~~tv~~~r~k~Ritfie~~~~-dl~~~LD-~aKvADlVll 150 (795)
|+|+|.++.+.. +| +..|..... +.+ ..++......-.++|+..+-. ....+.. ..+-||.+||
T Consensus 2 i~ivG~~~vGKT-sl----i~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~il 76 (190)
T cd04144 2 LVVLGDGGVGKT-AL----TIQLCLNHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFIL 76 (190)
T ss_pred EEEECCCCCCHH-HH----HHHHHhCCCCccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEE
Confidence 789999998876 67 444432111 111 112333333456788887632 2333332 4678999999
Q ss_pred eeeCCCccccccccccChHHHHHHHHHHh------cCCCceEEEeccCCc
Q 003796 151 VASASSFSEESMSYYIDSFGNQCLSVFRS------LGLPSTAVLIRDLPT 194 (795)
Q Consensus 151 ~idas~g~~~~~~~~fe~eg~e~L~~l~a------qG~P~vigVl~~Ld~ 194 (795)
++|.+.. +.|+.- .+++..+.. .+.| ++.|.+..|.
T Consensus 77 v~d~~~~------~s~~~~-~~~~~~i~~~~~~~~~~~p-iilvgNK~Dl 118 (190)
T cd04144 77 VYSITSR------STFERV-ERFREQIQRVKDESAADVP-IMIVGNKCDK 118 (190)
T ss_pred EEECCCH------HHHHHH-HHHHHHHHHHhcccCCCCC-EEEEEEChhc
Confidence 9998753 234332 223333322 2344 5556787775
No 220
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=74.73 E-value=50 Score=40.50 Aligned_cols=155 Identities=19% Similarity=0.281 Sum_probs=90.8
Q ss_pred HhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEE--eccCCc-------c----hhhh-HHHHHHHH
Q 003796 142 AKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVL--IRDLPT-------D----LKKR-KDLKKMCI 207 (795)
Q Consensus 142 aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigV--l~~Ld~-------~----~Kk~-~~~kK~lk 207 (795)
+-.|||.||++|-..| +|..|.|-||.|+..-.|=||+. +..|.. + .|+| +.+..-++
T Consensus 561 sslC~~aIlvvdImhG--------lepqtiESi~lLR~rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~v~~EF~ 632 (1064)
T KOG1144|consen 561 SSLCDLAILVVDIMHG--------LEPQTIESINLLRMRKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKDVQNEFK 632 (1064)
T ss_pred ccccceEEEEeehhcc--------CCcchhHHHHHHHhcCCCeEEeehhhhhhcccccCCCchHHHHHHHhhHHHHHHHH
Confidence 5679999999999866 88899999999999999988876 333322 0 1332 22444444
Q ss_pred hhccc---cc---CCCCeeEEeCC---------------HHHHHHHHHHHhhccccCcccccCCCeEEEEeeEeccCC--
Q 003796 208 SSLTS---EF---PEDCKFYAADT---------------KDELHKFLWLFKEQRLTVPHWRNQRPFLMAQKVDVVADD-- 264 (795)
Q Consensus 208 ~~f~~---ef---~~~~Klf~l~~---------------~~E~~nL~R~Is~~k~r~l~WR~~rpYmLadr~e~~~~~-- 264 (795)
.|+.. +| +-.+.|||=.. =.-+-+|+-+|-....+.+.=|-. | ++.++.+--+
T Consensus 633 ~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m~~kl~--y--~~ev~cTVlEVK 708 (1064)
T KOG1144|consen 633 ERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTMVEKLA--Y--VDEVQCTVLEVK 708 (1064)
T ss_pred HHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHHHHHHHh--h--hhheeeEEEEEE
Confidence 44443 22 12466766321 112445555555444433322211 1 1222211000
Q ss_pred CCCCCc----eEEEEEEEeCCCCCCCCeEEeCCCCceeeceeeccCCCCCCCc
Q 003796 265 CNSGKC----TLLLHGYLRAHCLSVNQLVHISGAGDFQLGKIEILKDPFPLNA 313 (795)
Q Consensus 265 ~~~~~~----~l~v~GyvRG~~l~~n~lVHIpG~GDfqi~~I~~~~dP~p~~~ 313 (795)
.-...| .+.+.|++| .|..|-++|++-=.+..|..|--|.|+..
T Consensus 709 vieG~GtTIDViLvNG~L~-----eGD~IvvcG~~GpIvTtIRaLLtP~PlkE 756 (1064)
T KOG1144|consen 709 VIEGHGTTIDVILVNGELH-----EGDQIVVCGLQGPIVTTIRALLTPQPLKE 756 (1064)
T ss_pred eecCCCceEEEEEEcceec-----cCCEEEEcCCCCchhHHHHHhcCCcchHh
Confidence 000112 234566655 57788899999999999999988988865
No 221
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=74.73 E-value=56 Score=32.33 Aligned_cols=101 Identities=10% Similarity=0.014 Sum_probs=55.5
Q ss_pred EEEecCCCccChhhHHHHHHHhhc-cCC-----CCCcc---eEEEecCceeeEEEEeCCCCC-hHHHHH-HHhhhceEEE
Q 003796 82 IVLFGLSASVNLNSVREDLLRQLS-SEG-----TGALS---STVSSSKYRLRTSVLQAPHGD-LVGCME-MAKVADLVAF 150 (795)
Q Consensus 82 V~Vvg~~~~~~~~sl~~~lvk~~~-~~~-----~~~g~---~tv~~~r~k~Ritfie~~~~d-l~~~LD-~aKvADlVll 150 (795)
|+|+|.++.+.. +| +..|. +.- .+.|. .++..+...-+++++..+..+ ...+-. ..+-||.+||
T Consensus 4 i~vvG~~~vGKT-sl----~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~il 78 (175)
T cd01874 4 CVVVGDGAVGKT-CL----LISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV 78 (175)
T ss_pred EEEECCCCCCHH-HH----HHHHHcCCCCCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEE
Confidence 789999998886 66 33332 211 11121 233444445678888876322 222222 4567999999
Q ss_pred eeeCCCccccccccccChHHHHHHHHHHhc--CCCceEEEeccCCc
Q 003796 151 VASASSFSEESMSYYIDSFGNQCLSVFRSL--GLPSTAVLIRDLPT 194 (795)
Q Consensus 151 ~idas~g~~~~~~~~fe~eg~e~L~~l~aq--G~P~vigVl~~Ld~ 194 (795)
++|.+.. ..|+.-....+..++.+ +.| ++.|.+..|.
T Consensus 79 v~d~~~~------~s~~~~~~~w~~~i~~~~~~~p-iilvgnK~Dl 117 (175)
T cd01874 79 CFSVVSP------SSFENVKEKWVPEITHHCPKTP-FLLVGTQIDL 117 (175)
T ss_pred EEECCCH------HHHHHHHHHHHHHHHHhCCCCC-EEEEEECHhh
Confidence 9998742 23443322344444433 333 4456776664
No 222
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=74.32 E-value=58 Score=32.09 Aligned_cols=105 Identities=7% Similarity=0.093 Sum_probs=56.4
Q ss_pred EEEEecCCCccChhhHHHHHHHh-hcc-CCCCCcc---eEEEecCceeeEEEEeCCC-CChHHHH-HHHhhhceEEEeee
Q 003796 81 VIVLFGLSASVNLNSVREDLLRQ-LSS-EGTGALS---STVSSSKYRLRTSVLQAPH-GDLVGCM-EMAKVADLVAFVAS 153 (795)
Q Consensus 81 iV~Vvg~~~~~~~~sl~~~lvk~-~~~-~~~~~g~---~tv~~~r~k~Ritfie~~~-~dl~~~L-D~aKvADlVll~id 153 (795)
=|+|+|.++.+.. +|+..++.. +.. +..+.+. .++..+..+-.++++.++. ..+.+|. ...+-||.+|||+|
T Consensus 4 ki~vvG~~~vGKT-sL~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~d 82 (172)
T cd04141 4 KIVMLGAGGVGKS-AVTMQFISHSFPDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIICYS 82 (172)
T ss_pred EEEEECCCCCcHH-HHHHHHHhCCCCCCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEEE
Confidence 4889999998876 663222211 110 1111121 2334444456788888762 2344444 34678999999999
Q ss_pred CCCccccccccccChHHHHHHHHHH----hcCCCceEEEeccCCc
Q 003796 154 ASSFSEESMSYYIDSFGNQCLSVFR----SLGLPSTAVLIRDLPT 194 (795)
Q Consensus 154 as~g~~~~~~~~fe~eg~e~L~~l~----aqG~P~vigVl~~Ld~ 194 (795)
.+.. ..|+.-- +++..+. ..++| +|.|.+..|.
T Consensus 83 ~~~~------~Sf~~~~-~~~~~i~~~~~~~~~p-iilvgNK~Dl 119 (172)
T cd04141 83 VTDR------HSFQEAS-EFKKLITRVRLTEDIP-LVLVGNKVDL 119 (172)
T ss_pred CCch------hHHHHHH-HHHHHHHHhcCCCCCC-EEEEEEChhh
Confidence 8743 2344321 2222332 23555 5667777775
No 223
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=72.89 E-value=21 Score=35.78 Aligned_cols=101 Identities=12% Similarity=0.116 Sum_probs=54.9
Q ss_pred EEEecCCCccChhhHHHHHHHhhccCCC------CCcc---eEEEecCceeeEEEEeCCCCC-hHHHHH-HHhhhceEEE
Q 003796 82 IVLFGLSASVNLNSVREDLLRQLSSEGT------GALS---STVSSSKYRLRTSVLQAPHGD-LVGCME-MAKVADLVAF 150 (795)
Q Consensus 82 V~Vvg~~~~~~~~sl~~~lvk~~~~~~~------~~g~---~tv~~~r~k~Ritfie~~~~d-l~~~LD-~aKvADlVll 150 (795)
|+|+|.++.+.. +| +..|..... +.+. ..+..+.....+.++..+... ...+-. ..+-||.+||
T Consensus 3 ivivG~~~vGKT-sl----i~~~~~~~~~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~il 77 (189)
T cd04134 3 VVVLGDGACGKT-SL----LNVFTRGYFPQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIML 77 (189)
T ss_pred EEEECCCCCCHH-HH----HHHHhcCCCCCccCCcceeeeEEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEE
Confidence 789999998886 67 444432111 1111 122233344577888776221 112211 2466999999
Q ss_pred eeeCCCccccccccccChHHHHHHHHHHhc--CCCceEEEeccCCc
Q 003796 151 VASASSFSEESMSYYIDSFGNQCLSVFRSL--GLPSTAVLIRDLPT 194 (795)
Q Consensus 151 ~idas~g~~~~~~~~fe~eg~e~L~~l~aq--G~P~vigVl~~Ld~ 194 (795)
++|.+.- ..|+......|..+..+ ++| ++.|.+..|.
T Consensus 78 v~dv~~~------~sf~~~~~~~~~~i~~~~~~~p-iilvgNK~Dl 116 (189)
T cd04134 78 CFSVDSP------DSLENVESKWLGEIREHCPGVK-LVLVALKCDL 116 (189)
T ss_pred EEECCCH------HHHHHHHHHHHHHHHHhCCCCC-EEEEEEChhh
Confidence 9998742 23543322344455443 555 6667777774
No 224
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=72.89 E-value=13 Score=37.17 Aligned_cols=68 Identities=22% Similarity=0.320 Sum_probs=43.0
Q ss_pred CCEEEEEecCCCccChhhHHHHHHHhhccCCC--------------CC-----------cc-eEEEecCceeeEEEEeCC
Q 003796 78 PPRVIVLFGLSASVNLNSVREDLLRQLSSEGT--------------GA-----------LS-STVSSSKYRLRTSVLQAP 131 (795)
Q Consensus 78 pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~--------------~~-----------g~-~tv~~~r~k~Ritfie~~ 131 (795)
.+.|++|+|+++++.. +|++.|+..++..+. .. |. .++.++. ++..++.+.
T Consensus 1 m~~Il~ivG~k~SGKT-TLie~lv~~L~~~G~rVa~iKH~hh~~~~D~~GkDs~r~~~aGa~~~v~~s~--~~~~~~~~~ 77 (161)
T COG1763 1 MMKILGIVGYKNSGKT-TLIEKLVRKLKARGYRVATVKHAHHDFDLDKPGKDTYRHRKAGADQVVVASD--HRTALMTRT 77 (161)
T ss_pred CCcEEEEEecCCCChh-hHHHHHHHHHHhCCcEEEEEEecCCCCCCCCCCCccchhhccccceEEEecC--CEEEEEEec
Confidence 3679999999998765 566666777754331 10 33 3555553 688888887
Q ss_pred C-CC---hHHHHHHHhhhceEEE
Q 003796 132 H-GD---LVGCMEMAKVADLVAF 150 (795)
Q Consensus 132 ~-~d---l~~~LD~aKvADlVll 150 (795)
. ++ ++++|+.+ =|+||.
T Consensus 78 ~~~~L~~vl~~l~~~--~D~vLV 98 (161)
T COG1763 78 PDRDLDAVLSRLDPL--LDLVLV 98 (161)
T ss_pred CCcCHHHHHHhcCcc--cCEEEE
Confidence 4 33 55555554 487765
No 225
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=72.79 E-value=13 Score=35.66 Aligned_cols=50 Identities=8% Similarity=0.009 Sum_probs=33.7
Q ss_pred HHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhc--CCCceEEEeccCCc
Q 003796 136 VGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSL--GLPSTAVLIRDLPT 194 (795)
Q Consensus 136 ~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aq--G~P~vigVl~~Ld~ 194 (795)
..+..+.+-||+||+|+|+... +..+-.++...|... |.| ++.|++..|.
T Consensus 3 ~~~~~~i~~aD~vl~ViD~~~p--------~~~~~~~l~~~l~~~~~~k~-~iivlNK~DL 54 (141)
T cd01857 3 RQLWRVVERSDIVVQIVDARNP--------LLFRPPDLERYVKEVDPRKK-NILLLNKADL 54 (141)
T ss_pred HHHHHHHhhCCEEEEEEEccCC--------cccCCHHHHHHHHhccCCCc-EEEEEechhc
Confidence 4677889999999999999853 222223555555444 654 5667888775
No 226
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=72.73 E-value=41 Score=32.86 Aligned_cols=101 Identities=10% Similarity=0.027 Sum_probs=54.1
Q ss_pred EEEecCCCccChhhHHHHHHHhhccCCCCC------c----ceEEEec----------CceeeEEEEeCCCCC-hHHH-H
Q 003796 82 IVLFGLSASVNLNSVREDLLRQLSSEGTGA------L----SSTVSSS----------KYRLRTSVLQAPHGD-LVGC-M 139 (795)
Q Consensus 82 V~Vvg~~~~~~~~sl~~~lvk~~~~~~~~~------g----~~tv~~~----------r~k~Ritfie~~~~d-l~~~-L 139 (795)
|+|+|+++.+.. +| +..|....... | ...+... ...-++.++.++-.. +..+ -
T Consensus 7 i~ivG~~~vGKT-sl----i~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 81 (180)
T cd04127 7 FLALGDSGVGKT-SF----LYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTT 81 (180)
T ss_pred EEEECCCCCCHH-HH----HHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHH
Confidence 789999998876 67 44443321111 1 1111111 234567788876222 2222 2
Q ss_pred HHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcC---CCceEEEeccCCc
Q 003796 140 EMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLG---LPSTAVLIRDLPT 194 (795)
Q Consensus 140 D~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG---~P~vigVl~~Ld~ 194 (795)
...+-||.+|||+|++.. ..|+.- .+.+..++.+. -|.++.|.+..|.
T Consensus 82 ~~~~~~~~~i~v~d~~~~------~s~~~~-~~~~~~i~~~~~~~~~piiiv~nK~Dl 132 (180)
T cd04127 82 AFFRDAMGFLLIFDLTNE------QSFLNV-RNWMSQLQTHAYCENPDIVLCGNKADL 132 (180)
T ss_pred HHhCCCCEEEEEEECCCH------HHHHHH-HHHHHHHHHhcCCCCCcEEEEEeCccc
Confidence 235679999999998742 223322 23444444432 2346667888775
No 227
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=72.16 E-value=32 Score=35.62 Aligned_cols=106 Identities=7% Similarity=-0.011 Sum_probs=60.0
Q ss_pred CCCCEEEEEecCCCccChhhHHHHHHHhhc-cCC-----CCCc----ceEEEecCceeeEEEEeCCC-CChHHHHHH-Hh
Q 003796 76 ASPPRVIVLFGLSASVNLNSVREDLLRQLS-SEG-----TGAL----SSTVSSSKYRLRTSVLQAPH-GDLVGCMEM-AK 143 (795)
Q Consensus 76 ~~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~-~~~-----~~~g----~~tv~~~r~k~Ritfie~~~-~dl~~~LD~-aK 143 (795)
+.+++=|+|||.++.+.. +| +..|. +.- .+.| .+++......-++.++.++- .....+... .+
T Consensus 10 ~~~~~Ki~vvG~~gvGKT-sl----i~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~ 84 (219)
T PLN03071 10 DYPSFKLVIVGDGGTGKT-TF----VKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYI 84 (219)
T ss_pred CCCceEEEEECcCCCCHH-HH----HHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcc
Confidence 366777999999998886 66 44332 211 1112 23333343346778887752 234455443 57
Q ss_pred hhceEEEeeeCCCccccccccccChHHHHHHHHHH--hcCCCceEEEeccCCc
Q 003796 144 VADLVAFVASASSFSEESMSYYIDSFGNQCLSVFR--SLGLPSTAVLIRDLPT 194 (795)
Q Consensus 144 vADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~--aqG~P~vigVl~~Ld~ 194 (795)
-||.+|||+|.+.. ..|+.- ...+..++ ..++| ++.|.+..|.
T Consensus 85 ~~~~~ilvfD~~~~------~s~~~i-~~w~~~i~~~~~~~p-iilvgNK~Dl 129 (219)
T PLN03071 85 HGQCAIIMFDVTAR------LTYKNV-PTWHRDLCRVCENIP-IVLCGNKVDV 129 (219)
T ss_pred cccEEEEEEeCCCH------HHHHHH-HHHHHHHHHhCCCCc-EEEEEEchhh
Confidence 89999999998853 224321 12233332 23544 4555777775
No 228
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=72.08 E-value=14 Score=36.56 Aligned_cols=88 Identities=19% Similarity=0.124 Sum_probs=50.5
Q ss_pred hHHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchhhhHHHHHHHHhhccccc
Q 003796 135 LVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKKRKDLKKMCISSLTSEF 214 (795)
Q Consensus 135 l~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~~~Kk~~~~kK~lk~~f~~ef 214 (795)
+..+..+++-||+||+|+|++.+ +.....+++..+ .+- .++.|++..|.. .+ ....+ ...++...
T Consensus 10 ~~~~~~~i~~aD~il~v~D~~~~--------~~~~~~~i~~~~--~~k-~~ilVlNK~Dl~-~~-~~~~~-~~~~~~~~- 74 (171)
T cd01856 10 LRQIKEKLKLVDLVIEVRDARIP--------LSSRNPLLEKIL--GNK-PRIIVLNKADLA-DP-KKTKK-WLKYFESK- 74 (171)
T ss_pred HHHHHHHHhhCCEEEEEeeccCc--------cCcCChhhHhHh--cCC-CEEEEEehhhcC-Ch-HHHHH-HHHHHHhc-
Confidence 56788999999999999999853 221223345544 244 467888888851 11 11111 11222222
Q ss_pred CCCCeeEEeCC--HHHHHHHHHHHhhc
Q 003796 215 PEDCKFYAADT--KDELHKFLWLFKEQ 239 (795)
Q Consensus 215 ~~~~Klf~l~~--~~E~~nL~R~Is~~ 239 (795)
+.+++.+|. ...+..|.+.|...
T Consensus 75 --~~~vi~iSa~~~~gi~~L~~~l~~~ 99 (171)
T cd01856 75 --GEKVLFVNAKSGKGVKKLLKAAKKL 99 (171)
T ss_pred --CCeEEEEECCCcccHHHHHHHHHHH
Confidence 356777774 33455666666554
No 229
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=71.36 E-value=6.5 Score=42.02 Aligned_cols=70 Identities=21% Similarity=0.321 Sum_probs=43.7
Q ss_pred EEEecCCCccChhhHHHHHHHhhccCCCCC-----cceEEEecC---ceeeEEEEeCCCCChH----------HHHHHHh
Q 003796 82 IVLFGLSASVNLNSVREDLLRQLSSEGTGA-----LSSTVSSSK---YRLRTSVLQAPHGDLV----------GCMEMAK 143 (795)
Q Consensus 82 V~Vvg~~~~~~~~sl~~~lvk~~~~~~~~~-----g~~tv~~~r---~k~Ritfie~~~~dl~----------~~LD~aK 143 (795)
|+.+|+|..+.. +| +..+|+...++ ...|...+. --..|+++..| .=+. .++-+|+
T Consensus 65 ValIGfPSVGKS-tl----Ls~iT~T~SeaA~yeFTTLtcIpGvi~y~ga~IQllDLP-GIieGAsqgkGRGRQviavAr 138 (364)
T KOG1486|consen 65 VALIGFPSVGKS-TL----LSKITSTHSEAASYEFTTLTCIPGVIHYNGANIQLLDLP-GIIEGASQGKGRGRQVIAVAR 138 (364)
T ss_pred EEEecCCCccHH-HH----HHHhhcchhhhhceeeeEEEeecceEEecCceEEEecCc-ccccccccCCCCCceEEEEee
Confidence 889999987664 55 66666543222 111111110 02567777766 4332 3677899
Q ss_pred hhceEEEeeeCCCc
Q 003796 144 VADLVAFVASASSF 157 (795)
Q Consensus 144 vADlVll~idas~g 157 (795)
.||+||+|+||+-+
T Consensus 139 taDlilMvLDatk~ 152 (364)
T KOG1486|consen 139 TADLILMVLDATKS 152 (364)
T ss_pred cccEEEEEecCCcc
Confidence 99999999999853
No 230
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=71.20 E-value=30 Score=34.64 Aligned_cols=99 Identities=13% Similarity=0.117 Sum_probs=55.6
Q ss_pred EEEecCCCccChhhHHHHHHHhh-ccCC-----CCCcc----eEEEecCceeeEEEEeCCC-CChHHHHHH-HhhhceEE
Q 003796 82 IVLFGLSASVNLNSVREDLLRQL-SSEG-----TGALS----STVSSSKYRLRTSVLQAPH-GDLVGCMEM-AKVADLVA 149 (795)
Q Consensus 82 V~Vvg~~~~~~~~sl~~~lvk~~-~~~~-----~~~g~----~tv~~~r~k~Ritfie~~~-~dl~~~LD~-aKvADlVl 149 (795)
|+|+|.++.+.. +| +..| .+.- .+.|. .++..+.....+.++.+.. ..+.++... ++-||.+|
T Consensus 3 i~vlG~~~vGKT-sL----i~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~ii 77 (182)
T cd04128 3 IGLLGDAQIGKT-SL----MVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAIL 77 (182)
T ss_pred EEEECCCCCCHH-HH----HHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEE
Confidence 789999998875 66 4433 2211 11132 2444444456677777652 234455544 57899999
Q ss_pred EeeeCCCccccccccccChHHHHHHHHHHh---cCCCceEEEeccCCc
Q 003796 150 FVASASSFSEESMSYYIDSFGNQCLSVFRS---LGLPSTAVLIRDLPT 194 (795)
Q Consensus 150 l~idas~g~~~~~~~~fe~eg~e~L~~l~a---qG~P~vigVl~~Ld~ 194 (795)
+|+|.+.- ..|+.- .+.+..+.. ...| +.|.++.|.
T Consensus 78 lv~D~t~~------~s~~~i-~~~~~~~~~~~~~~~p--ilVgnK~Dl 116 (182)
T cd04128 78 FMFDLTRK------STLNSI-KEWYRQARGFNKTAIP--ILVGTKYDL 116 (182)
T ss_pred EEEECcCH------HHHHHH-HHHHHHHHHhCCCCCE--EEEEEchhc
Confidence 99998742 234331 123333332 3445 457788775
No 231
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=71.05 E-value=31 Score=38.42 Aligned_cols=98 Identities=17% Similarity=0.276 Sum_probs=60.7
Q ss_pred CCCCEEEEEecCCCccChhhHHHHHHHhhccCCCCC--------cce----EEEecCc---eeeEEEEe-CCC---CChH
Q 003796 76 ASPPRVIVLFGLSASVNLNSVREDLLRQLSSEGTGA--------LSS----TVSSSKY---RLRTSVLQ-APH---GDLV 136 (795)
Q Consensus 76 ~~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~~--------g~~----tv~~~r~---k~Ritfie-~~~---~dl~ 136 (795)
..+--+|+|||-.+.+.. +| ++.+|..+... .|. ++-++++ ---+-||. .|. ..+.
T Consensus 175 ~~s~pviavVGYTNaGKs-TL----ikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~~vlltDTvGFisdLP~~LvaAF~ 249 (410)
T KOG0410|consen 175 GESSPVIAVVGYTNAGKS-TL----IKALTKAALYPNDRLFATLDPTLHSAHLPSGNFVLLTDTVGFISDLPIQLVAAFQ 249 (410)
T ss_pred cCCCceEEEEeecCccHH-HH----HHHHHhhhcCccchhheeccchhhhccCCCCcEEEEeechhhhhhCcHHHHHHHH
Confidence 334446999999887775 67 77776543221 111 1212210 00111221 010 3355
Q ss_pred HHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCce
Q 003796 137 GCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPST 185 (795)
Q Consensus 137 ~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~v 185 (795)
+.|.-.+=||++|=|+|.|- +..+..-+..|..|..-|+|+.
T Consensus 250 ATLeeVaeadlllHvvDiSh-------P~ae~q~e~Vl~vL~~igv~~~ 291 (410)
T KOG0410|consen 250 ATLEEVAEADLLLHVVDISH-------PNAEEQRETVLHVLNQIGVPSE 291 (410)
T ss_pred HHHHHHhhcceEEEEeecCC-------ccHHHHHHHHHHHHHhcCCCcH
Confidence 67777888999999999995 4478888999999999999863
No 232
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=68.86 E-value=29 Score=34.43 Aligned_cols=64 Identities=16% Similarity=0.179 Sum_probs=46.6
Q ss_pred eeeEEEEeCCCCChHHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc
Q 003796 122 RLRTSVLQAPHGDLVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT 194 (795)
Q Consensus 122 k~Ritfie~~~~dl~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~ 194 (795)
+-.+.++-||+..-..++.+...||.+|+++..+.. -=.....++..++..|.| +..|++..+.
T Consensus 92 ~~d~viiDtpp~~~~~~~~~l~~aD~vliv~~~~~~--------~~~~~~~~~~~l~~~~~~-~~vV~N~~~~ 155 (179)
T cd03110 92 GAELIIIDGPPGIGCPVIASLTGADAALLVTEPTPS--------GLHDLERAVELVRHFGIP-VGVVINKYDL 155 (179)
T ss_pred CCCEEEEECcCCCcHHHHHHHHcCCEEEEEecCCcc--------cHHHHHHHHHHHHHcCCC-EEEEEeCCCC
Confidence 346778888855444567788999999999998742 112467888888888987 4566888776
No 233
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=68.80 E-value=22 Score=34.35 Aligned_cols=42 Identities=14% Similarity=0.023 Sum_probs=28.6
Q ss_pred hhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc
Q 003796 144 VADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT 194 (795)
Q Consensus 144 vADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~ 194 (795)
=||+||+|+|++.+ ......+++..+...|.| ++.|++..|.
T Consensus 12 ~aD~vl~V~D~~~~--------~~~~~~~l~~~~~~~~~p-~iiv~NK~Dl 53 (156)
T cd01859 12 ESDVVLEVLDARDP--------ELTRSRKLERYVLELGKK-LLIVLNKADL 53 (156)
T ss_pred hCCEEEEEeeCCCC--------cccCCHHHHHHHHhCCCc-EEEEEEhHHh
Confidence 38999999999743 112224566666667865 5668888775
No 234
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=67.31 E-value=50 Score=33.35 Aligned_cols=101 Identities=9% Similarity=0.005 Sum_probs=55.6
Q ss_pred EEEecCCCccChhhHHHHHHHhhccCC------CCCc----ceEEEec-CceeeEEEEeCCC-CChHHHH-HHHhhhceE
Q 003796 82 IVLFGLSASVNLNSVREDLLRQLSSEG------TGAL----SSTVSSS-KYRLRTSVLQAPH-GDLVGCM-EMAKVADLV 148 (795)
Q Consensus 82 V~Vvg~~~~~~~~sl~~~lvk~~~~~~------~~~g----~~tv~~~-r~k~Ritfie~~~-~dl~~~L-D~aKvADlV 148 (795)
|+|+|+++.+.. +| +..|.... .+.| ..++..+ ...-.+.++..+. ..+.++. ...+-||.+
T Consensus 3 ivivG~~~vGKT-sl----i~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ 77 (201)
T cd04107 3 VLVIGDLGVGKT-SI----IKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGA 77 (201)
T ss_pred EEEECCCCCCHH-HH----HHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEE
Confidence 789999998876 67 44443221 1112 1223333 3456678887763 2233332 345789999
Q ss_pred EEeeeCCCccccccccccCh---HHHHHHHHHHh---cCCCceEEEeccCCc
Q 003796 149 AFVASASSFSEESMSYYIDS---FGNQCLSVFRS---LGLPSTAVLIRDLPT 194 (795)
Q Consensus 149 ll~idas~g~~~~~~~~fe~---eg~e~L~~l~a---qG~P~vigVl~~Ld~ 194 (795)
||++|.+.. ..|+. |-.++.+.+.. .++| +|.|.+..|.
T Consensus 78 ilv~D~t~~------~s~~~~~~~~~~i~~~~~~~~~~~~p-iilv~NK~Dl 122 (201)
T cd04107 78 IIVFDVTRP------STFEAVLKWKADLDSKVTLPNGEPIP-CLLLANKCDL 122 (201)
T ss_pred EEEEECCCH------HHHHHHHHHHHHHHHhhcccCCCCCc-EEEEEECCCc
Confidence 999998742 22332 22233332222 3444 4567787775
No 235
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=67.25 E-value=31 Score=33.88 Aligned_cols=91 Identities=19% Similarity=0.158 Sum_probs=63.1
Q ss_pred EEEecCCCccChhhHHHHHHHhhccCCCCCcceEEEecCc-----eeeEEEEeCCCCChHHHHHHHhhhceEEEeeeCCC
Q 003796 82 IVLFGLSASVNLNSVREDLLRQLSSEGTGALSSTVSSSKY-----RLRTSVLQAPHGDLVGCMEMAKVADLVAFVASASS 156 (795)
Q Consensus 82 V~Vvg~~~~~~~~sl~~~lvk~~~~~~~~~g~~tv~~~r~-----k~Ritfie~~~~dl~~~LD~aKvADlVll~idas~ 156 (795)
|+|+|.++.+- +.+ ++.+.+.+ ..+++.+.+. ..+++++.++..|..++..+.+=+|.|++++....
T Consensus 1 I~V~GatG~vG-~~l----~~~L~~~~---~~V~~~~R~~~~~~~~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~~~ 72 (183)
T PF13460_consen 1 ILVFGATGFVG-RAL----AKQLLRRG---HEVTALVRSPSKAEDSPGVEIIQGDLFDPDSVKAALKGADAVIHAAGPPP 72 (183)
T ss_dssp EEEETTTSHHH-HHH----HHHHHHTT---SEEEEEESSGGGHHHCTTEEEEESCTTCHHHHHHHHTTSSEEEECCHSTT
T ss_pred eEEECCCChHH-HHH----HHHHHHCC---CEEEEEecCchhcccccccccceeeehhhhhhhhhhhhcchhhhhhhhhc
Confidence 67888766432 245 44443333 2333333221 25899999998999999999999999999997653
Q ss_pred ccccccccccChHHHHHHHHHHhcCCCceEEE
Q 003796 157 FSEESMSYYIDSFGNQCLSVFRSLGLPSTAVL 188 (795)
Q Consensus 157 g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigV 188 (795)
. . -.....++.+++.+|.++++.+
T Consensus 73 ~------~--~~~~~~~~~a~~~~~~~~~v~~ 96 (183)
T PF13460_consen 73 K------D--VDAAKNIIEAAKKAGVKRVVYL 96 (183)
T ss_dssp T------H--HHHHHHHHHHHHHTTSSEEEEE
T ss_pred c------c--ccccccccccccccccccceee
Confidence 2 1 2346789999999999988765
No 236
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=67.21 E-value=85 Score=36.49 Aligned_cols=85 Identities=11% Similarity=0.034 Sum_probs=53.2
Q ss_pred hhceEEEee-eCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchhhhHHHHHHHHhhcccccCCCCeeEE
Q 003796 144 VADLVAFVA-SASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKKRKDLKKMCISSLTSEFPEDCKFYA 222 (795)
Q Consensus 144 vADlVll~i-das~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~~~Kk~~~~kK~lk~~f~~ef~~~~Klf~ 222 (795)
-||+.|++. |++++= =..+.+...-+.+++-|+..|.|-++ ||+..++........++.++. -| +..+.+
T Consensus 144 hstIgivVtTDgsi~d--I~Re~y~~aEe~~i~eLk~~~kPfii-vlN~~dp~~~et~~l~~~l~e-----ky-~vpvl~ 214 (492)
T TIGR02836 144 HSTIGVVVTTDGTITD--IPREDYVEAEERVIEELKELNKPFII-LLNSTHPYHPETEALRQELEE-----KY-DVPVLA 214 (492)
T ss_pred cCcEEEEEEcCCCccc--cccccchHHHHHHHHHHHhcCCCEEE-EEECcCCCCchhHHHHHHHHH-----Hh-CCceEE
Confidence 689999999 998540 00122556678999999999999765 456555310111122233322 12 355666
Q ss_pred eC----CHHHHHHHHHHHh
Q 003796 223 AD----TKDELHKFLWLFK 237 (795)
Q Consensus 223 l~----~~~E~~nL~R~Is 237 (795)
++ ...||.++++.+-
T Consensus 215 v~c~~l~~~DI~~il~~vL 233 (492)
T TIGR02836 215 MDVESMRESDILSVLEEVL 233 (492)
T ss_pred EEHHHcCHHHHHHHHHHHH
Confidence 66 6899999998864
No 237
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=67.09 E-value=17 Score=35.29 Aligned_cols=80 Identities=13% Similarity=0.120 Sum_probs=44.3
Q ss_pred ceEEEeeeCCCccccccccccChHHHHHH-HHHHhcCCCceEEEeccCCcchhhhHHHHHHHHhhcccccCCCCeeEEeC
Q 003796 146 DLVAFVASASSFSEESMSYYIDSFGNQCL-SVFRSLGLPSTAVLIRDLPTDLKKRKDLKKMCISSLTSEFPEDCKFYAAD 224 (795)
Q Consensus 146 DlVll~idas~g~~~~~~~~fe~eg~e~L-~~l~aqG~P~vigVl~~Ld~~~Kk~~~~kK~lk~~f~~ef~~~~Klf~l~ 224 (795)
|+||+|+|+... ...+-..+. ..+...+.| ++.|++..|.- . ...+...+. ++.... +.+++.+|
T Consensus 1 Dvvl~VvD~~~p--------~~~~~~~i~~~~~~~~~~p-~IiVlNK~Dl~-~-~~~~~~~~~-~~~~~~--~~~ii~vS 66 (155)
T cd01849 1 DVILEVLDARDP--------LGTRSPDIERVLIKEKGKK-LILVLNKADLV-P-KEVLRKWLA-YLRHSY--PTIPFKIS 66 (155)
T ss_pred CEEEEEEeccCC--------ccccCHHHHHHHHhcCCCC-EEEEEechhcC-C-HHHHHHHHH-HHHhhC--CceEEEEe
Confidence 899999999743 111122333 466677776 67778888851 1 122223222 222222 46788887
Q ss_pred CH--HHHHHHHHHHhhc
Q 003796 225 TK--DELHKFLWLFKEQ 239 (795)
Q Consensus 225 ~~--~E~~nL~R~Is~~ 239 (795)
.. ..+..|.+.|..+
T Consensus 67 a~~~~gi~~L~~~i~~~ 83 (155)
T cd01849 67 ATNGQGIEKKESAFTKQ 83 (155)
T ss_pred ccCCcChhhHHHHHHHH
Confidence 43 3366666766543
No 238
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=67.07 E-value=17 Score=35.29 Aligned_cols=27 Identities=22% Similarity=0.383 Sum_probs=19.4
Q ss_pred EEEEecCCCccChhhHHHHHHHhhccCC
Q 003796 81 VIVLFGLSASVNLNSVREDLLRQLSSEG 108 (795)
Q Consensus 81 iV~Vvg~~~~~~~~sl~~~lvk~~~~~~ 108 (795)
+|+|+|+++++.. +|+..|++.+.+.+
T Consensus 2 vv~VvG~~~sGKT-Tl~~~Li~~l~~~g 28 (140)
T PF03205_consen 2 VVQVVGPKNSGKT-TLIRKLINELKRRG 28 (140)
T ss_dssp EEEEEESTTSSHH-HHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHH-HHHHHHHHHHhHcC
Confidence 6899999987765 56566677776544
No 239
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=66.98 E-value=25 Score=38.00 Aligned_cols=87 Identities=14% Similarity=0.036 Sum_probs=48.7
Q ss_pred hHHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchhhhHHHHHHHHhhccccc
Q 003796 135 LVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKKRKDLKKMCISSLTSEF 214 (795)
Q Consensus 135 l~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~~~Kk~~~~kK~lk~~f~~ef 214 (795)
+..+-.+++-||+||+|+||... +..+-.+++..+. +- .++.|++..|...+ ....+ ...++..
T Consensus 12 ~~~~~~~l~~aDvVl~V~Dar~p--------~~~~~~~i~~~l~--~k-p~IiVlNK~DL~~~--~~~~~-~~~~~~~-- 75 (276)
T TIGR03596 12 RREIKEKLKLVDVVIEVLDARIP--------LSSRNPMIDEIRG--NK-PRLIVLNKADLADP--AVTKQ-WLKYFEE-- 75 (276)
T ss_pred HHHHHHHHhhCCEEEEEEeCCCC--------CCCCChhHHHHHC--CC-CEEEEEEccccCCH--HHHHH-HHHHHHH--
Confidence 45577888999999999999853 2222234455442 43 46788898885111 11222 2223322
Q ss_pred CCCCeeEEeCC--HHHHHHHHHHHhh
Q 003796 215 PEDCKFYAADT--KDELHKFLWLFKE 238 (795)
Q Consensus 215 ~~~~Klf~l~~--~~E~~nL~R~Is~ 238 (795)
.+..++.+|. ...+..|...|..
T Consensus 76 -~~~~vi~iSa~~~~gi~~L~~~i~~ 100 (276)
T TIGR03596 76 -KGIKALAINAKKGKGVKKIIKAAKK 100 (276)
T ss_pred -cCCeEEEEECCCcccHHHHHHHHHH
Confidence 1356777774 2334555555543
No 240
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=66.03 E-value=89 Score=37.22 Aligned_cols=200 Identities=9% Similarity=0.082 Sum_probs=122.7
Q ss_pred EEEEecCCCccChhhHHHHHHHhhccCCC-------------C-CcceEEEecCceeeEEEEeCCCCChHHHHHH-----
Q 003796 81 VIVLFGLSASVNLNSVREDLLRQLSSEGT-------------G-ALSSTVSSSKYRLRTSVLQAPHGDLVGCMEM----- 141 (795)
Q Consensus 81 iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~-------------~-~g~~tv~~~r~k~Ritfie~~~~dl~~~LD~----- 141 (795)
|||=|--.++|+...| ++.-.-.+. + +--|||-+- ..++ |+.+..+.++.+||.
T Consensus 65 IIAHVDHGKSTLaDrL----Le~tg~i~~~~~q~q~LDkl~vERERGITIkaQ--tasi-fy~~~~~ylLNLIDTPGHvD 137 (650)
T KOG0462|consen 65 IIAHVDHGKSTLADRL----LELTGTIDNNIGQEQVLDKLQVERERGITIKAQ--TASI-FYKDGQSYLLNLIDTPGHVD 137 (650)
T ss_pred EEEEecCCcchHHHHH----HHHhCCCCCCCchhhhhhhhhhhhhcCcEEEee--eeEE-EEEcCCceEEEeecCCCccc
Confidence 6777777778887777 654321111 0 145777652 2343 444433566666664
Q ss_pred --------HhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchhhhHHHHHHHHhhcccc
Q 003796 142 --------AKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKKRKDLKKMCISSLTSE 213 (795)
Q Consensus 142 --------aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~~~Kk~~~~kK~lk~~f~~e 213 (795)
.-.||=+|||+||+.| ....|---+-.....|+ .+|.||+.+|...-.-..++..++.-|.
T Consensus 138 Fs~EVsRslaac~G~lLvVDA~qG--------vqAQT~anf~lAfe~~L-~iIpVlNKIDlp~adpe~V~~q~~~lF~-- 206 (650)
T KOG0462|consen 138 FSGEVSRSLAACDGALLVVDASQG--------VQAQTVANFYLAFEAGL-AIIPVLNKIDLPSADPERVENQLFELFD-- 206 (650)
T ss_pred ccceehehhhhcCceEEEEEcCcC--------chHHHHHHHHHHHHcCC-eEEEeeeccCCCCCCHHHHHHHHHHHhc--
Confidence 4457779999999966 66677666666666777 5888999888511222346666655553
Q ss_pred cCCCCeeEEeCCHH--HHHHHHHHHhhccccCcccccCCCeEEEEeeEeccCCCCCCCceEEEEEEEeCCCCCCCCeEEe
Q 003796 214 FPEDCKFYAADTKD--ELHKFLWLFKEQRLTVPHWRNQRPFLMAQKVDVVADDCNSGKCTLLLHGYLRAHCLSVNQLVHI 291 (795)
Q Consensus 214 f~~~~Klf~l~~~~--E~~nL~R~Is~~k~r~l~WR~~rpYmLadr~e~~~~~~~~~~~~l~v~GyvRG~~l~~n~lVHI 291 (795)
++ .+++.|+|.+. -+..|+=.|-..=|-|..-++.-=-||+-..+|+. .+-+..+|+|--.-++.|..|--
T Consensus 207 ~~-~~~~i~vSAK~G~~v~~lL~AII~rVPpP~~~~d~plr~Lifds~yD~------y~G~I~~vrv~~G~vrkGdkV~~ 279 (650)
T KOG0462|consen 207 IP-PAEVIYVSAKTGLNVEELLEAIIRRVPPPKGIRDAPLRMLIFDSEYDE------YRGVIALVRVVDGVVRKGDKVQS 279 (650)
T ss_pred CC-ccceEEEEeccCccHHHHHHHHHhhCCCCCCCCCcchHHHhhhhhhhh------hcceEEEEEEeeeeeecCCEEEE
Confidence 34 67999998432 12235555555556666555655556666656543 35577777777666777877766
Q ss_pred CCCC-ceeeceeecc
Q 003796 292 SGAG-DFQLGKIEIL 305 (795)
Q Consensus 292 pG~G-Dfqi~~I~~~ 305 (795)
---| .|.++.|..+
T Consensus 280 ~~t~~~yev~~vgvm 294 (650)
T KOG0462|consen 280 AATGKSYEVKVVGVM 294 (650)
T ss_pred eecCcceEeEEeEEe
Confidence 5555 4667776655
No 241
>COG2451 Ribosomal protein L35AE/L33A [Translation, ribosomal structure and biogenesis]
Probab=64.68 E-value=15 Score=33.31 Aligned_cols=66 Identities=21% Similarity=0.402 Sum_probs=51.6
Q ss_pred EeeeeEEEeec-CCChhhccccccceeeec--c-c--ccceeeCCCCCCceeEEEeccccc---cccEEEEecce
Q 003796 714 VSKLKAIVRYM-FHNPEDVRWFKPVEVWTK--C-G--RRGRIKEPVGTHGAMKCVFNGILQ---QRDTVCMSLYK 779 (795)
Q Consensus 714 I~K~tA~Ir~M-F~n~~dV~~Fk~a~L~Tk--s-G--irG~IK~~lgt~G~fka~Fe~~i~---~~D~V~m~lyk 779 (795)
.|-+++.||-- -.|++|...+.|-.+-=| + | +.|.|-..-|..|..||.|+..+- .++.|.+.||+
T Consensus 23 q~P~~~liKi~gv~s~~eA~~y~gk~v~yk~~~~G~Vi~G~V~R~HGnsGaVrarF~~~LP~qa~G~~v~v~ly~ 97 (100)
T COG2451 23 QHPNVSLIKIEGVDSPEEAQFYLGKRVCYKYRSSGRVIKGKVVRTHGNSGAVRARFERNLPGQALGTSVEVKLYP 97 (100)
T ss_pred cCCceEEEEEecCCCHHHHHhhhccEEEEEeCCCCcEEEEEEEEecCCcceEEEEecCCCCchhcCcEEEEEEcc
Confidence 34467788877 889999999977655433 3 5 468999999999999999999885 46788888885
No 242
>PHA02518 ParA-like protein; Provisional
Probab=64.06 E-value=38 Score=34.18 Aligned_cols=75 Identities=17% Similarity=0.245 Sum_probs=45.4
Q ss_pred eEEEEeCCCCChHHHHHHHhhhceEEEeeeCCCccccccccccChHH-HHHHHHHHhc-----CCCceEEEeccCCcchh
Q 003796 124 RTSVLQAPHGDLVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFG-NQCLSVFRSL-----GLPSTAVLIRDLPTDLK 197 (795)
Q Consensus 124 Ritfie~~~~dl~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg-~e~L~~l~aq-----G~P~vigVl~~Ld~~~K 197 (795)
.+.+|-||++.=..+..+...||+||+++..+. ++..+ ..++..++.. |+|....|++..+...+
T Consensus 78 d~viiD~p~~~~~~~~~~l~~aD~viip~~ps~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~n~~~~~~~ 148 (211)
T PHA02518 78 DYVVVDGAPQDSELARAALRIADMVLIPVQPSP---------FDIWAAPDLVELIKARQEVTDGLPKFAFIISRAIKNTQ 148 (211)
T ss_pred CEEEEeCCCCccHHHHHHHHHCCEEEEEeCCCh---------hhHHHHHHHHHHHHHHHhhCCCCceEEEEEeccCCcch
Confidence 677888886655668889999999999999874 44432 2344444432 66665555555443111
Q ss_pred hhHHHHHHHH
Q 003796 198 KRKDLKKMCI 207 (795)
Q Consensus 198 k~~~~kK~lk 207 (795)
....+++.++
T Consensus 149 ~~~~~~~~l~ 158 (211)
T PHA02518 149 LYREARKALA 158 (211)
T ss_pred HHHHHHHHHH
Confidence 1234555554
No 243
>COG0218 Predicted GTPase [General function prediction only]
Probab=64.01 E-value=41 Score=34.93 Aligned_cols=83 Identities=12% Similarity=0.201 Sum_probs=50.7
Q ss_pred hceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc-chhhhHHHHHHHHhhcccccCCC--CeeE
Q 003796 145 ADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT-DLKKRKDLKKMCISSLTSEFPED--CKFY 221 (795)
Q Consensus 145 ADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~-~~Kk~~~~kK~lk~~f~~ef~~~--~Klf 221 (795)
=..|++++|+..+ ....-.|++..|...|+|-.+ |+|..|. +.-.+.+..+.++..+...++.. .-+|
T Consensus 107 L~~vvlliD~r~~--------~~~~D~em~~~l~~~~i~~~v-v~tK~DKi~~~~~~k~l~~v~~~l~~~~~~~~~~~~~ 177 (200)
T COG0218 107 LKGVVLLIDARHP--------PKDLDREMIEFLLELGIPVIV-VLTKADKLKKSERNKQLNKVAEELKKPPPDDQWVVLF 177 (200)
T ss_pred heEEEEEEECCCC--------CcHHHHHHHHHHHHcCCCeEE-EEEccccCChhHHHHHHHHHHHHhcCCCCccceEEEE
Confidence 3467899999975 555556999999999999654 5777774 11224445566666666666543 3334
Q ss_pred EeCCHHHHHHHHHHH
Q 003796 222 AADTKDELHKFLWLF 236 (795)
Q Consensus 222 ~l~~~~E~~nL~R~I 236 (795)
+.....-+..|-..|
T Consensus 178 ss~~k~Gi~~l~~~i 192 (200)
T COG0218 178 SSLKKKGIDELKAKI 192 (200)
T ss_pred ecccccCHHHHHHHH
Confidence 444443344444444
No 244
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=62.94 E-value=47 Score=40.21 Aligned_cols=68 Identities=16% Similarity=0.125 Sum_probs=50.8
Q ss_pred cceEEEec---CceeeEEEEeCCCCC---hHHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCce
Q 003796 112 LSSTVSSS---KYRLRTSVLQAPHGD---LVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPST 185 (795)
Q Consensus 112 g~~tv~~~---r~k~Ritfie~~~~d---l~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~v 185 (795)
.|+|++.+ .+.+=++|+..| .- ...+.-+..+||.|+|++|+..| +-+.++.+|...-.+-+|=|
T Consensus 183 ~p~Tl~l~D~~~KS~l~nilDTP-GHVnF~DE~ta~l~~sDgvVlvvDv~EG--------VmlntEr~ikhaiq~~~~i~ 253 (971)
T KOG0468|consen 183 TPVTLVLSDSKGKSYLMNILDTP-GHVNFSDETTASLRLSDGVVLVVDVAEG--------VMLNTERIIKHAIQNRLPIV 253 (971)
T ss_pred cceEEEEecCcCceeeeeeecCC-CcccchHHHHHHhhhcceEEEEEEcccC--------ceeeHHHHHHHHHhccCcEE
Confidence 68888764 233445666665 43 34567777899999999999966 66678999998888889887
Q ss_pred EEE
Q 003796 186 AVL 188 (795)
Q Consensus 186 igV 188 (795)
+++
T Consensus 254 vvi 256 (971)
T KOG0468|consen 254 VVI 256 (971)
T ss_pred EEE
Confidence 776
No 245
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=62.33 E-value=54 Score=33.52 Aligned_cols=110 Identities=13% Similarity=0.096 Sum_probs=54.0
Q ss_pred EEEEecCCCccChhhHHHHHHHhhccCCCCC--cceEEEe-cCceeeEEEEeCCC-CCh-HHHHHH---HhhhceEEEee
Q 003796 81 VIVLFGLSASVNLNSVREDLLRQLSSEGTGA--LSSTVSS-SKYRLRTSVLQAPH-GDL-VGCMEM---AKVADLVAFVA 152 (795)
Q Consensus 81 iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~~--g~~tv~~-~r~k~Ritfie~~~-~dl-~~~LD~---aKvADlVll~i 152 (795)
.|.++||++++.. +|...|+..-.....+. .-++... ...++.+.+|..|- .-| ..+++. ..-|-=|||||
T Consensus 5 ~vlL~Gps~SGKT-aLf~~L~~~~~~~T~tS~e~n~~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~IIfvv 83 (181)
T PF09439_consen 5 TVLLVGPSGSGKT-ALFSQLVNGKTVPTVTSMENNIAYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGIIFVV 83 (181)
T ss_dssp EEEEE-STTSSHH-HHHHHHHHSS---B---SSEEEECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEEEEEE
T ss_pred eEEEEcCCCCCHH-HHHHHHhcCCcCCeeccccCCceEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEEEEEE
Confidence 4889999999987 55333232210000111 1122221 22356788888873 112 236665 77788999999
Q ss_pred eCCCccccccccccChHHHHHHHHHHh-cCCCceEEEeccCC
Q 003796 153 SASSFSEESMSYYIDSFGNQCLSVFRS-LGLPSTAVLIRDLP 193 (795)
Q Consensus 153 das~g~~~~~~~~fe~eg~e~L~~l~a-qG~P~vigVl~~Ld 193 (795)
|++.. ..+ --..-+.=|.+|+.+.. +.-|.++.+.+.-|
T Consensus 84 DSs~~-~~~-~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~D 123 (181)
T PF09439_consen 84 DSSTD-QKE-LRDVAEYLYDILSDTEVQKNKPPILIACNKQD 123 (181)
T ss_dssp ETTTH-HHH-HHHHHHHHHHHHHHHHCCTT--EEEEEEE-TT
T ss_pred eCccc-hhh-HHHHHHHHHHHHHhhhhccCCCCEEEEEeCcc
Confidence 99831 000 00011234666777663 33444555555444
No 246
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=62.10 E-value=45 Score=36.96 Aligned_cols=49 Identities=20% Similarity=0.306 Sum_probs=31.9
Q ss_pred HHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcC-CCceEEEeccCCc
Q 003796 137 GCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLG-LPSTAVLIRDLPT 194 (795)
Q Consensus 137 ~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG-~P~vigVl~~Ld~ 194 (795)
+-=+++--||+|+.|+|++.. =-.-.-.+|.+|..-- +|++ -|+..+|.
T Consensus 148 ~~~~a~q~AD~vvVv~Das~t--------r~~l~p~vl~~l~~ys~ips~-lvmnkid~ 197 (379)
T KOG1423|consen 148 NPRDAAQNADCVVVVVDASAT--------RTPLHPRVLHMLEEYSKIPSI-LVMNKIDK 197 (379)
T ss_pred CHHHHHhhCCEEEEEEeccCC--------cCccChHHHHHHHHHhcCCce-eeccchhc
Confidence 445788889999999999831 0112345677777654 4544 46667665
No 247
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=59.92 E-value=31 Score=35.11 Aligned_cols=63 Identities=13% Similarity=0.193 Sum_probs=43.7
Q ss_pred eEEEEeCCC-CChHHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc
Q 003796 124 RTSVLQAPH-GDLVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT 194 (795)
Q Consensus 124 Ritfie~~~-~dl~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~ 194 (795)
.+.||.||+ .......-+++.||.||+++++... --....+.+..|+..|.+-...||+..+.
T Consensus 129 D~ViiD~pp~~~~~~~~~~~~~~D~vilV~~~~~~--------~~~~~~~~~~~l~~~~~~~~gvVlN~~~~ 192 (204)
T TIGR01007 129 DYIIIDTPPIGTVTDAAIIARACDASILVTDAGEI--------KKRDVQKAKEQLEQTGSNFLGVVLNKVDI 192 (204)
T ss_pred CEEEEeCCCccccchHHHHHHhCCeEEEEEECCCC--------CHHHHHHHHHHHHhCCCCEEEEEEeCccc
Confidence 456777774 2223334467889999999998742 23456888899999999755556777765
No 248
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=59.65 E-value=67 Score=33.58 Aligned_cols=101 Identities=14% Similarity=0.063 Sum_probs=53.6
Q ss_pred EEEecCCCccChhhHHHHHHHhhccCCC-----CCcceEEEecCceeeEEEEeCCCC-ChHHHH-HHHhhhceEEEeeeC
Q 003796 82 IVLFGLSASVNLNSVREDLLRQLSSEGT-----GALSSTVSSSKYRLRTSVLQAPHG-DLVGCM-EMAKVADLVAFVASA 154 (795)
Q Consensus 82 V~Vvg~~~~~~~~sl~~~lvk~~~~~~~-----~~g~~tv~~~r~k~Ritfie~~~~-dl~~~L-D~aKvADlVll~ida 154 (795)
|+|+|.++.+.. +| +..|..... +.|..........-.+.++.++-. ....+. ...+-||.+|+|+|.
T Consensus 3 IvivG~~~vGKT-SL----i~r~~~~~f~~~~~Tig~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dv 77 (220)
T cd04126 3 VVLLGDMNVGKT-SL----LHRYMERRFKDTVSTVGGAFYLKQWGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYDV 77 (220)
T ss_pred EEEECCCCCcHH-HH----HHHHhcCCCCCCCCccceEEEEEEeeEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEEC
Confidence 789999998776 66 444422211 113211111111245677777521 122222 246779999999999
Q ss_pred CCccccccccccChHHHHHHHHHHhc--CCCceEEEeccCCc
Q 003796 155 SSFSEESMSYYIDSFGNQCLSVFRSL--GLPSTAVLIRDLPT 194 (795)
Q Consensus 155 s~g~~~~~~~~fe~eg~e~L~~l~aq--G~P~vigVl~~Ld~ 194 (795)
+.. ..|+.--..++.+++.. ++| ++.|.++.|.
T Consensus 78 t~~------~Sf~~l~~~~~~l~~~~~~~~p-iIlVgNK~DL 112 (220)
T cd04126 78 SNV------QSLEELEDRFLGLTDTANEDCL-FAVVGNKLDL 112 (220)
T ss_pred CCH------HHHHHHHHHHHHHHHhcCCCCc-EEEEEECccc
Confidence 852 34555444455555432 333 4556777664
No 249
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=59.59 E-value=1.5e+02 Score=30.14 Aligned_cols=107 Identities=9% Similarity=0.022 Sum_probs=56.7
Q ss_pred CCCCEEEEEecCCCccChhhHHHHHHHhhccCCC-----CCc----ceEEEecCceeeEEEEeCCC-CChHHHHH-HHhh
Q 003796 76 ASPPRVIVLFGLSASVNLNSVREDLLRQLSSEGT-----GAL----SSTVSSSKYRLRTSVLQAPH-GDLVGCME-MAKV 144 (795)
Q Consensus 76 ~~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~-----~~g----~~tv~~~r~k~Ritfie~~~-~dl~~~LD-~aKv 144 (795)
+.+.+=|+++|+++++.. +|++ +.+++.-. +.| ..++......-.+.++.++. .....+.. ..+-
T Consensus 6 ~~~~~kv~liG~~g~GKT-tLi~---~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~ 81 (215)
T PTZ00132 6 EVPEFKLILVGDGGVGKT-TFVK---RHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIK 81 (215)
T ss_pred CCCCceEEEECCCCCCHH-HHHH---HHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhcc
Confidence 456677999999999886 6632 33332211 111 22222233356777777652 12322322 3456
Q ss_pred hceEEEeeeCCCccccccccccChHHHHHHHHHH--hcCCCceEEEeccCCc
Q 003796 145 ADLVAFVASASSFSEESMSYYIDSFGNQCLSVFR--SLGLPSTAVLIRDLPT 194 (795)
Q Consensus 145 ADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~--aqG~P~vigVl~~Ld~ 194 (795)
+|.+|+++|.+.. ..|+.. ..++..+. ...+| ++.|.+..|.
T Consensus 82 ~~~~i~v~d~~~~------~s~~~~-~~~~~~i~~~~~~~~-i~lv~nK~Dl 125 (215)
T PTZ00132 82 GQCAIIMFDVTSR------ITYKNV-PNWHRDIVRVCENIP-IVLVGNKVDV 125 (215)
T ss_pred CCEEEEEEECcCH------HHHHHH-HHHHHHHHHhCCCCC-EEEEEECccC
Confidence 8999999998853 223222 12233222 13444 5556777775
No 250
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=58.49 E-value=62 Score=30.98 Aligned_cols=75 Identities=12% Similarity=0.070 Sum_probs=48.1
Q ss_pred eeEEEEeCCCCChHHHHHHHhhhceEEEeeeCCCccccccccccCh-HHHHHHHHHHhc-CCCceEEEeccCCcchhhhH
Q 003796 123 LRTSVLQAPHGDLVGCMEMAKVADLVAFVASASSFSEESMSYYIDS-FGNQCLSVFRSL-GLPSTAVLIRDLPTDLKKRK 200 (795)
Q Consensus 123 ~Ritfie~~~~dl~~~LD~aKvADlVll~idas~g~~~~~~~~fe~-eg~e~L~~l~aq-G~P~vigVl~~Ld~~~Kk~~ 200 (795)
-.+.++.||+..-...+.+++.||.||++++++. ... .+..+|+.+... +.+++..|+++.... +...
T Consensus 45 yd~VIiD~p~~~~~~~~~~l~~aD~vviv~~~~~---------~s~~~~~~~l~~l~~~~~~~~~~lVvN~~~~~-~~~~ 114 (139)
T cd02038 45 YDYIIIDTGAGISDNVLDFFLAADEVIVVTTPEP---------TSITDAYALIKKLAKQLRVLNFRVVVNRAESP-KEGK 114 (139)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCeEEEEcCCCh---------hHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCH-HHHH
Confidence 3567788875433445789999999999999874 222 246777777554 455666678887651 2223
Q ss_pred HHHHHHH
Q 003796 201 DLKKMCI 207 (795)
Q Consensus 201 ~~kK~lk 207 (795)
++.+.+.
T Consensus 115 ~~~~~~~ 121 (139)
T cd02038 115 KVFKRLS 121 (139)
T ss_pred HHHHHHH
Confidence 3444444
No 251
>PTZ00258 GTP-binding protein; Provisional
Probab=58.33 E-value=29 Score=39.69 Aligned_cols=71 Identities=14% Similarity=0.079 Sum_probs=45.1
Q ss_pred EEEEEecCCCccChhhHHHHHHHhhccCCCCC--------cceE--EEecCce---------------eeEEEEeCCC--
Q 003796 80 RVIVLFGLSASVNLNSVREDLLRQLSSEGTGA--------LSST--VSSSKYR---------------LRTSVLQAPH-- 132 (795)
Q Consensus 80 ~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~~--------g~~t--v~~~r~k---------------~Ritfie~~~-- 132 (795)
.-|+|||+|+.+.+ +| ++.+|+..... .|.+ +..+..+ ..+.|+..|-
T Consensus 22 ~kvgIVG~PNvGKS-TL----fnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv 96 (390)
T PTZ00258 22 LKMGIVGLPNVGKS-TT----FNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLV 96 (390)
T ss_pred cEEEEECCCCCChH-HH----HHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcC
Confidence 45999999998886 67 66666554321 1111 1122100 1378888772
Q ss_pred --C-----ChHHHHHHHhhhceEEEeeeCC
Q 003796 133 --G-----DLVGCMEMAKVADLVAFVASAS 155 (795)
Q Consensus 133 --~-----dl~~~LD~aKvADlVll~idas 155 (795)
. =-+..|+..+=||++|+|+|+.
T Consensus 97 ~ga~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 97 KGASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred cCCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 1 1136788899999999999986
No 252
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=57.63 E-value=48 Score=36.03 Aligned_cols=49 Identities=16% Similarity=0.064 Sum_probs=33.5
Q ss_pred hHHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc
Q 003796 135 LVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT 194 (795)
Q Consensus 135 l~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~ 194 (795)
+..+..+++-||+||+|+||... +..+-.++...+. +.| ++.|++..|.
T Consensus 15 ~~~l~~~l~~aDvIL~VvDar~p--------~~~~~~~l~~~~~--~kp-~iiVlNK~DL 63 (287)
T PRK09563 15 RREIKENLKLVDVVIEVLDARIP--------LSSENPMIDKIIG--NKP-RLLILNKSDL 63 (287)
T ss_pred HHHHHHHhhhCCEEEEEEECCCC--------CCCCChhHHHHhC--CCC-EEEEEEchhc
Confidence 45678889999999999999853 3323344445443 544 5678888775
No 253
>PRK01889 GTPase RsgA; Reviewed
Probab=57.50 E-value=40 Score=38.01 Aligned_cols=80 Identities=11% Similarity=0.029 Sum_probs=52.5
Q ss_pred HhhhceEEEeeeCCCccccccccccCh-HHHHHHHHHHhcCCCceEEEeccCCcchhhhHHHHHHHHhhcccccCCCCee
Q 003796 142 AKVADLVAFVASASSFSEESMSYYIDS-FGNQCLSVFRSLGLPSTAVLIRDLPTDLKKRKDLKKMCISSLTSEFPEDCKF 220 (795)
Q Consensus 142 aKvADlVll~idas~g~~~~~~~~fe~-eg~e~L~~l~aqG~P~vigVl~~Ld~~~Kk~~~~kK~lk~~f~~ef~~~~Kl 220 (795)
|.=+|.|++|+++.. .|+. .-..+|.++...|+|.++ ||+..|.. .......+.+++. ..+..+
T Consensus 110 aANvD~vliV~s~~p--------~~~~~~ldr~L~~a~~~~i~piI-VLNK~DL~-~~~~~~~~~~~~~-----~~g~~V 174 (356)
T PRK01889 110 AANVDTVFIVCSLNH--------DFNLRRIERYLALAWESGAEPVI-VLTKADLC-EDAEEKIAEVEAL-----APGVPV 174 (356)
T ss_pred EEeCCEEEEEEecCC--------CCChhHHHHHHHHHHHcCCCEEE-EEEChhcC-CCHHHHHHHHHHh-----CCCCcE
Confidence 345899999999973 3665 678999999999998866 88888751 1111222333333 336789
Q ss_pred EEeCCH--HHHHHHHHHH
Q 003796 221 YAADTK--DELHKFLWLF 236 (795)
Q Consensus 221 f~l~~~--~E~~nL~R~I 236 (795)
|++|.. ..+..|...|
T Consensus 175 i~vSa~~g~gl~~L~~~L 192 (356)
T PRK01889 175 LAVSALDGEGLDVLAAWL 192 (356)
T ss_pred EEEECCCCccHHHHHHHh
Confidence 998853 2345555555
No 254
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=55.77 E-value=1.1e+02 Score=27.84 Aligned_cols=51 Identities=16% Similarity=0.070 Sum_probs=38.2
Q ss_pred eEEEEeCCCCChHHHHHHHhhhceEEEeeeCCCccccccccccC-hHHHHHHHHHHhcCCC
Q 003796 124 RTSVLQAPHGDLVGCMEMAKVADLVAFVASASSFSEESMSYYID-SFGNQCLSVFRSLGLP 183 (795)
Q Consensus 124 Ritfie~~~~dl~~~LD~aKvADlVll~idas~g~~~~~~~~fe-~eg~e~L~~l~aqG~P 183 (795)
.+.++-||+.--.....+...||.||++++++. +. .....++..|+..|.|
T Consensus 44 D~IIiDtpp~~~~~~~~~l~~aD~vlvvv~~~~---------~s~~~~~~~~~~l~~~~~~ 95 (106)
T cd03111 44 DYVVVDLGRSLDEVSLAALDQADRVFLVTQQDL---------PSIRNAKRLLELLRVLDYS 95 (106)
T ss_pred CEEEEeCCCCcCHHHHHHHHHcCeEEEEecCCh---------HHHHHHHHHHHHHHHcCCC
Confidence 678888875443445678889999999999874 22 3467888888888876
No 255
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=55.19 E-value=11 Score=46.24 Aligned_cols=16 Identities=19% Similarity=0.189 Sum_probs=7.7
Q ss_pred CCCCCCCccccCCccc
Q 003796 306 KDPFPLNARKESDAME 321 (795)
Q Consensus 306 ~dP~p~~~~~~~~~m~ 321 (795)
-|.|.+.-....+-||
T Consensus 1302 Ldqc~VtFNstG~VmY 1317 (1516)
T KOG1832|consen 1302 LDQCAVTFNSTGDVMY 1317 (1516)
T ss_pred ccceEEEeccCccchh
Confidence 3556554444444454
No 256
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=54.11 E-value=31 Score=37.56 Aligned_cols=69 Identities=16% Similarity=0.167 Sum_probs=44.2
Q ss_pred EEEecCCCccChhhHHHHHHHhhccCCCCC------------cceEEEecCc-------------eeeEEEEeCCCCC--
Q 003796 82 IVLFGLSASVNLNSVREDLLRQLSSEGTGA------------LSSTVSSSKY-------------RLRTSVLQAPHGD-- 134 (795)
Q Consensus 82 V~Vvg~~~~~~~~sl~~~lvk~~~~~~~~~------------g~~tv~~~r~-------------k~Ritfie~~~~d-- 134 (795)
|+|||+|.++.. +| ++.+|+.+... |.+.+...|+ -..++|+..| .=
T Consensus 1 igivG~PN~GKS-TL----fn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~p-Gl~~ 74 (274)
T cd01900 1 IGIVGLPNVGKS-TL----FNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIA-GLVK 74 (274)
T ss_pred CeEeCCCCCcHH-HH----HHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECC-CcCC
Confidence 689999998886 67 66666655321 3333322110 0147777665 31
Q ss_pred --------hHHHHHHHhhhceEEEeeeCCC
Q 003796 135 --------LVGCMEMAKVADLVAFVASASS 156 (795)
Q Consensus 135 --------l~~~LD~aKvADlVll~idas~ 156 (795)
-+..|+.++-||++|+|||+..
T Consensus 75 ~a~~~~glg~~fL~~i~~~D~li~VV~~f~ 104 (274)
T cd01900 75 GASKGEGLGNKFLSHIREVDAIAHVVRCFE 104 (274)
T ss_pred CCchhhHHHHHHHHHHHhCCEEEEEEeCcC
Confidence 1367888899999999999863
No 257
>cd03706 mtEFTU_III Domain III of mitochondrial EF-TU (mtEF-TU). mtEF-TU is highly conserved and is 55-60% identical to bacterial EF-TU. The overall structure is similar to that observed in the Escherichia coli and Thermus aquaticus EF-TU. However, compared with that observed in prokaryotic EF-TU the nucleotide-binding domain (domain I) of EF-TUmt is in a different orientation relative to the rest of the structure. Furthermore, domain III is followed by a short 11-amino acid extension that forms one helical turn. This extension seems to be specific to the mitochondrial factors and has not been observed in any of the prokaryotic factors.
Probab=54.09 E-value=76 Score=28.22 Aligned_cols=71 Identities=10% Similarity=0.083 Sum_probs=48.5
Q ss_pred cccCCCCCeEEEEeeeeeeeeeeeeccCCCCCCceEEecccCCCceEEEEEE--eecCCCCccEEEEEeCCCCCCCeEEE
Q 003796 611 DAPIKAKEELIFHVGFRQFVARPIFSSDNMNSDKHKMERFLHAGCFSVASIY--APICFPPLPLIVLKSADGGVAPAVAA 688 (795)
Q Consensus 611 ~~~lKSkdpLi~s~GwRRFq~~PifS~~~~~~~r~k~~ky~~~~~~~~Atfy--gPi~~~~t~vl~f~~~~~~~~~ri~a 688 (795)
+.||++...+.|++|-.+-...-. .. ++ .+++.+|..++|.+. .|+..-+.+-++++.. + +.+|
T Consensus 21 ~~~i~~g~~~~~~~~t~~~~~~i~-~~---~~-----~~~l~~g~~~~v~i~l~~p~~~~~g~rf~lR~~----~-~tvg 86 (93)
T cd03706 21 HKPFVSNFQPQMFSLTWDCAARID-LP---PG-----KEMVMPGEDTKVTLILRRPMVLEKGQRFTLRDG----N-RTIG 86 (93)
T ss_pred CccccCCCeeEEEeccceEEEEEE-CC---CC-----CcEeCCCCEEEEEEEECCcEEEeeCCEEEEEEC----C-EEEE
Confidence 389999999999998765333211 11 11 356788999999998 8886444455555544 2 7999
Q ss_pred EeEEecc
Q 003796 689 VGSLRSI 695 (795)
Q Consensus 689 tG~vl~~ 695 (795)
.|.|+++
T Consensus 87 ~G~V~~~ 93 (93)
T cd03706 87 TGLVTDT 93 (93)
T ss_pred EEEEEeC
Confidence 9999763
No 258
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=53.11 E-value=2.2e+02 Score=31.86 Aligned_cols=135 Identities=17% Similarity=0.184 Sum_probs=70.5
Q ss_pred EEEecCCCccChhhHHHHHHHhhccCCCCC----------cceEEEecCceeeEEEEeCCCCCh----------HHHHHH
Q 003796 82 IVLFGLSASVNLNSVREDLLRQLSSEGTGA----------LSSTVSSSKYRLRTSVLQAPHGDL----------VGCMEM 141 (795)
Q Consensus 82 V~Vvg~~~~~~~~sl~~~lvk~~~~~~~~~----------g~~tv~~~r~k~Ritfie~~~~dl----------~~~LD~ 141 (795)
|..||+|..+.. +| ++.+++..... -.=||...-|.+ +|+-..| .=| +..|--
T Consensus 199 vGLVG~PNAGKS-TL----L~als~AKpkVa~YaFTTL~P~iG~v~yddf~q-~tVADiP-GiI~GAh~nkGlG~~FLrH 271 (366)
T KOG1489|consen 199 VGLVGFPNAGKS-TL----LNALSRAKPKVAHYAFTTLRPHIGTVNYDDFSQ-ITVADIP-GIIEGAHMNKGLGYKFLRH 271 (366)
T ss_pred cceecCCCCcHH-HH----HHHhhccCCcccccceeeeccccceeeccccce-eEeccCc-cccccccccCcccHHHHHH
Confidence 567888887664 66 55554433211 111444444544 5544333 211 235556
Q ss_pred HhhhceEEEeeeCCCccccccccccChH-HHHHHHH---HHhcCCC--ceEEEeccCCcchhhhHHHHHHHHhhcccccC
Q 003796 142 AKVADLVAFVASASSFSEESMSYYIDSF-GNQCLSV---FRSLGLP--STAVLIRDLPTDLKKRKDLKKMCISSLTSEFP 215 (795)
Q Consensus 142 aKvADlVll~idas~g~~~~~~~~fe~e-g~e~L~~---l~aqG~P--~vigVl~~Ld~~~Kk~~~~kK~lk~~f~~ef~ 215 (795)
+--|++++||+|.+.+. -.+.| .++.|.. +-..|+. ..+.|.+.+|.. --.+...++|++++...
T Consensus 272 iER~~~l~fVvD~s~~~------~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~-eae~~~l~~L~~~lq~~-- 342 (366)
T KOG1489|consen 272 IERCKGLLFVVDLSGKQ------LRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLP-EAEKNLLSSLAKRLQNP-- 342 (366)
T ss_pred HHhhceEEEEEECCCcc------cCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCch-hHHHHHHHHHHHHcCCC--
Confidence 66799999999998541 01222 2222221 1234554 256778888851 11222346666666554
Q ss_pred CCCeeEEeCC-----HHHHHHHHHH
Q 003796 216 EDCKFYAADT-----KDELHKFLWL 235 (795)
Q Consensus 216 ~~~Klf~l~~-----~~E~~nL~R~ 235 (795)
++|.++. -.+.++.+|.
T Consensus 343 ---~V~pvsA~~~egl~~ll~~lr~ 364 (366)
T KOG1489|consen 343 ---HVVPVSAKSGEGLEELLNGLRE 364 (366)
T ss_pred ---cEEEeeeccccchHHHHHHHhh
Confidence 7888773 3445555553
No 259
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=52.23 E-value=32 Score=33.41 Aligned_cols=63 Identities=16% Similarity=0.123 Sum_probs=46.2
Q ss_pred ceeeEEEEeCCC------CChHHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEecc
Q 003796 121 YRLRTSVLQAPH------GDLVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRD 191 (795)
Q Consensus 121 ~k~Ritfie~~~------~dl~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~ 191 (795)
....++|+..|- .+-..+.+.+.-||+||+|+++... +...-.++|..+..+..+++|+|++.
T Consensus 99 ~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~--------~~~~~~~~l~~~~~~~~~~~i~V~nk 167 (168)
T PF00350_consen 99 LLRNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQD--------LTESDMEFLKQMLDPDKSRTIFVLNK 167 (168)
T ss_dssp TSCSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTST--------GGGHHHHHHHHHHTTTCSSEEEEEE-
T ss_pred cccceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcc--------cchHHHHHHHHHhcCCCCeEEEEEcC
Confidence 356777877653 2224577788999999999999853 55556777777778888889999874
No 260
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=51.79 E-value=1.5e+02 Score=31.41 Aligned_cols=102 Identities=12% Similarity=0.050 Sum_probs=56.4
Q ss_pred EEEEecCCCccChhhHHHHHHHhhccCC------CCCc---ceEEEecCceeeEEEEeCCCC-ChHHHHH-HHhhhceEE
Q 003796 81 VIVLFGLSASVNLNSVREDLLRQLSSEG------TGAL---SSTVSSSKYRLRTSVLQAPHG-DLVGCME-MAKVADLVA 149 (795)
Q Consensus 81 iV~Vvg~~~~~~~~sl~~~lvk~~~~~~------~~~g---~~tv~~~r~k~Ritfie~~~~-dl~~~LD-~aKvADlVl 149 (795)
=|+|||.++.+.. +| +..|.... .+.| ...+.....+.++.++..+-. .+.++.. ..+=||.+|
T Consensus 15 KIvvvGd~~VGKT-sL----i~r~~~~~F~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vI 89 (232)
T cd04174 15 KLVLVGDVQCGKT-AM----LQVLAKDCYPETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVL 89 (232)
T ss_pred EEEEECCCCCcHH-HH----HHHHhcCCCCCCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEE
Confidence 4889999998876 66 44443211 1111 112333445677888887622 2344433 457899999
Q ss_pred EeeeCCCccccccccccChHHHHHHHHHHhc--CCCceEEEeccCCc
Q 003796 150 FVASASSFSEESMSYYIDSFGNQCLSVFRSL--GLPSTAVLIRDLPT 194 (795)
Q Consensus 150 l~idas~g~~~~~~~~fe~eg~e~L~~l~aq--G~P~vigVl~~Ld~ 194 (795)
||+|.+.. ..|+.-....+..++.+ +. .++.|.+..|.
T Consensus 90 lVyDit~~------~Sf~~~~~~w~~~i~~~~~~~-piilVgNK~DL 129 (232)
T cd04174 90 LCFDISRP------ETVDSALKKWKAEIMDYCPST-RILLIGCKTDL 129 (232)
T ss_pred EEEECCCh------HHHHHHHHHHHHHHHHhCCCC-CEEEEEECccc
Confidence 99999842 23442111222333322 34 35667777774
No 261
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=49.16 E-value=87 Score=32.50 Aligned_cols=64 Identities=17% Similarity=0.128 Sum_probs=42.8
Q ss_pred eeEEEEeCCCCChHHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc
Q 003796 123 LRTSVLQAPHGDLVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT 194 (795)
Q Consensus 123 ~Ritfie~~~~dl~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~ 194 (795)
-.+.+|.||+.--..++.+...||.||++++++.. .+. .+..++..++..|.+.+..|++..+.
T Consensus 109 yD~VIiD~p~~~~~~~~~~l~~ad~vliv~~~~~~-------s~~-~~~~~~~~~~~~~~~~~~vv~N~~~~ 172 (251)
T TIGR01969 109 TDFLLIDAPAGLERDAVTALAAADELLLVVNPEIS-------SIT-DALKTKIVAEKLGTAILGVVLNRVTR 172 (251)
T ss_pred CCEEEEeCCCccCHHHHHHHHhCCeEEEEECCCCc-------hHH-HHHHHHHHHHhcCCceEEEEEECCCc
Confidence 36777888754444567778899999999998752 222 23455666677788755555676665
No 262
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=48.17 E-value=1.2e+02 Score=30.22 Aligned_cols=107 Identities=6% Similarity=-0.022 Sum_probs=53.1
Q ss_pred EEEEecCCCccChhhHHHHHHH-hhcc-CCCCCcc---eEEEecCceeeEEEEeCCCCC-hHHHH-HHHhhhceEEEeee
Q 003796 81 VIVLFGLSASVNLNSVREDLLR-QLSS-EGTGALS---STVSSSKYRLRTSVLQAPHGD-LVGCM-EMAKVADLVAFVAS 153 (795)
Q Consensus 81 iV~Vvg~~~~~~~~sl~~~lvk-~~~~-~~~~~g~---~tv~~~r~k~Ritfie~~~~d-l~~~L-D~aKvADlVll~id 153 (795)
-|+|+|+++.+.. +|++.+.. .+.. ...+.+. ..+........++++..+... ...+- ...+-||.+|+++|
T Consensus 3 Ki~ivG~~g~GKS-tLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~~ 81 (187)
T cd04129 3 KLVIVGDGACGKT-SLLSVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGFA 81 (187)
T ss_pred EEEEECCCCCCHH-HHHHHHHhCCCCcccCCcccceEEEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEEE
Confidence 3799999998886 66333221 1111 1111111 122223333456666665211 11110 13467899999999
Q ss_pred CCCccccccccccChHHHHHHHHHHhcC-CCceEEEeccCCc
Q 003796 154 ASSFSEESMSYYIDSFGNQCLSVFRSLG-LPSTAVLIRDLPT 194 (795)
Q Consensus 154 as~g~~~~~~~~fe~eg~e~L~~l~aqG-~P~vigVl~~Ld~ 194 (795)
.+.. ..|+.-....+..++.+. =..++.|.+.+|.
T Consensus 82 i~~~------~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl 117 (187)
T cd04129 82 VDTP------DSLENVRTKWIEEVRRYCPNVPVILVGLKKDL 117 (187)
T ss_pred CCCH------HHHHHHHHHHHHHHHHhCCCCCEEEEeeChhh
Confidence 8642 235544334556555432 2334556777774
No 263
>PF01247 Ribosomal_L35Ae: Ribosomal protein L35Ae; InterPro: IPR001780 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The ribosomal L35A eukaryotic and archaebacterial ribosomal proteins can be grouped on the basis of sequence similarities. One of these families consists of: Vertebrate L35A. Caenorhabditis elegans L35A (F10E7.7). Saccharomyces cerevisiae L37A/L37B (Rp47). Plant L35A. Pyrococcus woesei L35A homologue []. These proteins have 87 to 110 amino-acid residues.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3IZR_j 2LP6_A 1SQR_A 4A18_H 4A1D_H 4A19_H 4A1B_H 3IZS_j.
Probab=47.97 E-value=29 Score=31.79 Aligned_cols=55 Identities=18% Similarity=0.289 Sum_probs=37.8
Q ss_pred eeeeEEEeec-CCChhhccccccceeeec------------ccccceeeCCCCCCceeEEEecccccc
Q 003796 715 SKLKAIVRYM-FHNPEDVRWFKPVEVWTK------------CGRRGRIKEPVGTHGAMKCVFNGILQQ 769 (795)
Q Consensus 715 ~K~tA~Ir~M-F~n~~dV~~Fk~a~L~Tk------------sGirG~IK~~lgt~G~fka~Fe~~i~~ 769 (795)
|-++|.||== -++.+|..||-|-.+-=+ .=+-|.|..+-|..|.+||.|...|-.
T Consensus 18 ~~~~aLlKiegV~~~~~a~fylGKrv~yvyk~~~~~~~~k~r~iwGkV~r~HGnsGvVrAkF~~nLP~ 85 (95)
T PF01247_consen 18 HPNTALLKIEGVNTKEDAQFYLGKRVAYVYKAKNKKNGSKGRVIWGKVTRPHGNSGVVRAKFKKNLPP 85 (95)
T ss_dssp CEEEEEEEESS-STCHHHHTTTT-EEEEEECE-SSSTTECSEEEEEEEEEESTTTTEEEEEESS--ST
T ss_pred CCCeeEEeecCccCHHHHHhhcCcEEEEEEecccccCCCcEeEEEEEEEeEEcCCCEEEEEeCCCCCh
Confidence 4466666653 678888888877655332 124599999999999999999977643
No 264
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=47.92 E-value=67 Score=32.57 Aligned_cols=27 Identities=11% Similarity=0.151 Sum_probs=19.5
Q ss_pred CCEEEEEecCCCccChhhHHHHHHHhhc
Q 003796 78 PPRVIVLFGLSASVNLNSVREDLLRQLS 105 (795)
Q Consensus 78 pP~iV~Vvg~~~~~~~~sl~~~lvk~~~ 105 (795)
.|.+++|+|++++++. .|++.|++.+.
T Consensus 5 ~~~ii~ivG~sgsGKT-TLi~~li~~l~ 31 (173)
T PRK10751 5 MIPLLAIAAWSGTGKT-TLLKKLIPALC 31 (173)
T ss_pred CceEEEEECCCCChHH-HHHHHHHHHHh
Confidence 3558999999998775 55555576664
No 265
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=47.73 E-value=2.4e+02 Score=30.00 Aligned_cols=84 Identities=12% Similarity=0.156 Sum_probs=46.7
Q ss_pred HhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchhhhHHHHHHHHhhcccccCCCCeeE
Q 003796 142 AKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKKRKDLKKMCISSLTSEFPEDCKFY 221 (795)
Q Consensus 142 aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~~~Kk~~~~kK~lk~~f~~ef~~~~Klf 221 (795)
++=+|.+++|+|+... + .-|+ .-..+|..+...|+|-++ |++..|.. .. ..+.......+.. .+.++|
T Consensus 34 ~~n~D~viiV~d~~~p---~--~s~~-~l~r~l~~~~~~~i~~vI-V~NK~DL~-~~-~~~~~~~~~~~~~---~g~~v~ 101 (245)
T TIGR00157 34 VANIDQIVIVSSAVLP---E--LSLN-QLDRFLVVAEAQNIEPII-VLNKIDLL-DD-EDMEKEQLDIYRN---IGYQVL 101 (245)
T ss_pred cccCCEEEEEEECCCC---C--CCHH-HHHHHHHHHHHCCCCEEE-EEECcccC-CC-HHHHHHHHHHHHH---CCCeEE
Confidence 7779999999998742 0 0122 345667777778877655 67777741 11 1222122223322 257888
Q ss_pred EeCCHH--HHHHHHHHHh
Q 003796 222 AADTKD--ELHKFLWLFK 237 (795)
Q Consensus 222 ~l~~~~--E~~nL~R~Is 237 (795)
.+|..+ .+..|...|.
T Consensus 102 ~~SAktg~gi~eLf~~l~ 119 (245)
T TIGR00157 102 MTSSKNQDGLKELIEALQ 119 (245)
T ss_pred EEecCCchhHHHHHhhhc
Confidence 888432 3444444443
No 266
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=47.49 E-value=1.7e+02 Score=30.73 Aligned_cols=101 Identities=12% Similarity=0.084 Sum_probs=55.0
Q ss_pred EEEecCCCccChhhHHHHHHHhhccCC------CCCc-c--eEEEecCceeeEEEEeCCCCC-hHHHHH-HHhhhceEEE
Q 003796 82 IVLFGLSASVNLNSVREDLLRQLSSEG------TGAL-S--STVSSSKYRLRTSVLQAPHGD-LVGCME-MAKVADLVAF 150 (795)
Q Consensus 82 V~Vvg~~~~~~~~sl~~~lvk~~~~~~------~~~g-~--~tv~~~r~k~Ritfie~~~~d-l~~~LD-~aKvADlVll 150 (795)
|+|||.++.+.. +| +..|.... .+.+ . ..+......-+|.++.++-.. +..+-. ..+-||.+||
T Consensus 4 IvvvGd~~vGKT-sL----i~~~~~~~f~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~ill 78 (222)
T cd04173 4 IVVVGDAECGKT-AL----LQVFAKDAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLI 78 (222)
T ss_pred EEEECCCCCCHH-HH----HHHHHcCCCCCccCCccccceEEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEE
Confidence 789999998886 67 44443211 1111 1 223444456678888876222 233222 3478999999
Q ss_pred eeeCCCccccccccccChHHHHHHHHHHh--cCCCceEEEeccCCc
Q 003796 151 VASASSFSEESMSYYIDSFGNQCLSVFRS--LGLPSTAVLIRDLPT 194 (795)
Q Consensus 151 ~idas~g~~~~~~~~fe~eg~e~L~~l~a--qG~P~vigVl~~Ld~ 194 (795)
++|.+.. ..|+.--..++..++. .++| ++.|.+..|.
T Consensus 79 vfdis~~------~Sf~~i~~~w~~~~~~~~~~~p-iiLVgnK~DL 117 (222)
T cd04173 79 CFDISRP------ETLDSVLKKWQGETQEFCPNAK-VVLVGCKLDM 117 (222)
T ss_pred EEECCCH------HHHHHHHHHHHHHHHhhCCCCC-EEEEEECccc
Confidence 9998852 2344322222222322 3444 4556677775
No 267
>PTZ00041 60S ribosomal protein L35a; Provisional
Probab=47.35 E-value=49 Score=31.55 Aligned_cols=64 Identities=25% Similarity=0.342 Sum_probs=44.4
Q ss_pred eeeeEEEeec-CCChhhccccccceeeecc------------cccceeeCCCCCCceeEEEeccccc---cccEEEEecc
Q 003796 715 SKLKAIVRYM-FHNPEDVRWFKPVEVWTKC------------GRRGRIKEPVGTHGAMKCVFNGILQ---QRDTVCMSLY 778 (795)
Q Consensus 715 ~K~tA~Ir~M-F~n~~dV~~Fk~a~L~Tks------------GirG~IK~~lgt~G~fka~Fe~~i~---~~D~V~m~ly 778 (795)
|-|+|.||== .++.+|..||-|-.+-=++ =|.|.|..|-|..|.+||.|...|- ++..|.+-||
T Consensus 37 ~~~~aLlKieGV~~~~~a~fYlGKrvayvyka~~~~~~~k~RviwGKVtR~HGnsGvVrAkF~~nLPp~A~G~~VrVmly 116 (120)
T PTZ00041 37 YPNVALLKIEGVNTREDARFYLGKRVAYVYKAKKLKNGTKFRAIWGKITRPHGNSGVVRARFNKNLPPKAIGSRVRVFLY 116 (120)
T ss_pred CCceEEEEecCcCChhhhHhhccceEEEEEcCccccCCcceeEEEEEEEcccCCCcEEEEEeCCCCChHHcCCeEEEEEc
Confidence 3456666633 5677777777665443221 2559999999999999999998764 4666766665
No 268
>PRK09602 translation-associated GTPase; Reviewed
Probab=47.21 E-value=58 Score=37.36 Aligned_cols=72 Identities=15% Similarity=0.113 Sum_probs=45.8
Q ss_pred CEEEEEecCCCccChhhHHHHHHHhhccCCCCC------------cceEEEe-------------------c-CceeeEE
Q 003796 79 PRVIVLFGLSASVNLNSVREDLLRQLSSEGTGA------------LSSTVSS-------------------S-KYRLRTS 126 (795)
Q Consensus 79 P~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~~------------g~~tv~~-------------------~-r~k~Rit 126 (795)
|.-|++||+|+.+.+ +| +..+|+..... |...+.. . ..-..++
T Consensus 1 ~~kigivG~pnvGKS-Tl----fn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~ 75 (396)
T PRK09602 1 MITIGLVGKPNVGKS-TF----FNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVE 75 (396)
T ss_pred CcEEEEECCCCCCHH-HH----HHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEE
Confidence 456999999998885 67 66666544321 3222210 0 0013467
Q ss_pred EEeCCCC---------Ch-HHHHHHHhhhceEEEeeeCCC
Q 003796 127 VLQAPHG---------DL-VGCMEMAKVADLVAFVASASS 156 (795)
Q Consensus 127 fie~~~~---------dl-~~~LD~aKvADlVll~idas~ 156 (795)
|+-.+ . .+ +..|+.++-||.+|+|+|++.
T Consensus 76 i~D~a-Gl~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~~ 114 (396)
T PRK09602 76 LIDVA-GLVPGAHEGRGLGNQFLDDLRQADALIHVVDASG 114 (396)
T ss_pred EEEcC-CcCCCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 77665 3 12 378889999999999999973
No 269
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=46.15 E-value=1.9e+02 Score=33.65 Aligned_cols=19 Identities=26% Similarity=0.366 Sum_probs=15.7
Q ss_pred CCCCEEEEEecCCCccChh
Q 003796 76 ASPPRVIVLFGLSASVNLN 94 (795)
Q Consensus 76 ~~pP~iV~Vvg~~~~~~~~ 94 (795)
..+|.+|+++||++++.+.
T Consensus 97 ~~~~~vi~lvG~~GvGKTT 115 (429)
T TIGR01425 97 KGKQNVIMFVGLQGSGKTT 115 (429)
T ss_pred CCCCeEEEEECCCCCCHHH
Confidence 4679999999999977653
No 270
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=45.51 E-value=1.7e+02 Score=33.49 Aligned_cols=105 Identities=18% Similarity=0.175 Sum_probs=58.6
Q ss_pred CCCCEEEEEecCCCccChhhHHHHHHHhhccCCCCC----------cceEEEecCceeeEEEEeCCC-----CChHHHHH
Q 003796 76 ASPPRVIVLFGLSASVNLNSVREDLLRQLSSEGTGA----------LSSTVSSSKYRLRTSVLQAPH-----GDLVGCME 140 (795)
Q Consensus 76 ~~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~~----------g~~tv~~~r~k~Ritfie~~~-----~dl~~~LD 140 (795)
+..|.-|||+|-++++.. |+||.| +-+...+..+ .+.....+++ ..++|...|. -.....|+
T Consensus 32 ~~~~l~IaV~G~sGsGKS-SfINal-rGl~~~d~~aA~tGv~etT~~~~~Y~~p~~-pnv~lWDlPG~gt~~f~~~~Yl~ 108 (376)
T PF05049_consen 32 DNAPLNIAVTGESGSGKS-SFINAL-RGLGHEDEGAAPTGVVETTMEPTPYPHPKF-PNVTLWDLPGIGTPNFPPEEYLK 108 (376)
T ss_dssp HH--EEEEEEESTTSSHH-HHHHHH-TT--TTSTTS--SSSHSCCTS-EEEE-SS--TTEEEEEE--GGGSS--HHHHHH
T ss_pred hcCceEEEEECCCCCCHH-HHHHHH-hCCCCCCcCcCCCCCCcCCCCCeeCCCCCC-CCCeEEeCCCCCCCCCCHHHHHH
Confidence 356999999999999875 884442 1221112111 2333344543 5788888763 23444555
Q ss_pred HHh--hhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc
Q 003796 141 MAK--VADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT 194 (795)
Q Consensus 141 ~aK--vADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~ 194 (795)
-.+ --|++|++.+.. |-+.--.+...++..|-| ...|-|.+|.
T Consensus 109 ~~~~~~yD~fiii~s~r----------f~~ndv~La~~i~~~gK~-fyfVRTKvD~ 153 (376)
T PF05049_consen 109 EVKFYRYDFFIIISSER----------FTENDVQLAKEIQRMGKK-FYFVRTKVDS 153 (376)
T ss_dssp HTTGGG-SEEEEEESSS------------HHHHHHHHHHHHTT-E-EEEEE--HHH
T ss_pred HccccccCEEEEEeCCC----------CchhhHHHHHHHHHcCCc-EEEEEecccc
Confidence 433 468888877766 566778899999999998 6667777664
No 271
>PRK00098 GTPase RsgA; Reviewed
Probab=44.90 E-value=66 Score=35.23 Aligned_cols=47 Identities=13% Similarity=0.209 Sum_probs=33.4
Q ss_pred HHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc
Q 003796 141 MAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT 194 (795)
Q Consensus 141 ~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~ 194 (795)
+|.=+|+||+|+|+... ..++..-..+|..+...|.|-+ .|++..|.
T Consensus 77 iaaniD~vllV~d~~~p------~~~~~~idr~L~~~~~~~ip~i-IVlNK~DL 123 (298)
T PRK00098 77 IAANVDQAVLVFAAKEP------DFSTDLLDRFLVLAEANGIKPI-IVLNKIDL 123 (298)
T ss_pred eeecCCEEEEEEECCCC------CCCHHHHHHHHHHHHHCCCCEE-EEEEhHHc
Confidence 36779999999999631 1233445778888888898854 47787765
No 272
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=44.33 E-value=62 Score=34.52 Aligned_cols=42 Identities=17% Similarity=0.043 Sum_probs=31.8
Q ss_pred hhceEEEeeeCCCccccccccccCh-HHHHHHHHHHhcCCCceEEEeccCCc
Q 003796 144 VADLVAFVASASSFSEESMSYYIDS-FGNQCLSVFRSLGLPSTAVLIRDLPT 194 (795)
Q Consensus 144 vADlVll~idas~g~~~~~~~~fe~-eg~e~L~~l~aqG~P~vigVl~~Ld~ 194 (795)
-++++|+|+||..+ +.. ...++.+.+...| -++++|+|.+|.
T Consensus 162 ~~~IIL~Vvda~~d--------~~~~d~l~ia~~ld~~~-~rti~ViTK~D~ 204 (240)
T smart00053 162 EECLILAVTPANVD--------LANSDALKLAKEVDPQG-ERTIGVITKLDL 204 (240)
T ss_pred ccCeEEEEEECCCC--------CCchhHHHHHHHHHHcC-CcEEEEEECCCC
Confidence 56799999999864 333 3468888887777 457889999996
No 273
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=44.09 E-value=1.8e+02 Score=28.94 Aligned_cols=102 Identities=11% Similarity=0.049 Sum_probs=55.2
Q ss_pred EEEecCCCccChhhHHHHHHHhhccCC-CCC-----cc---eEEEecCceeeEEEEeCCCCC-hHHHHH-HHhhhceEEE
Q 003796 82 IVLFGLSASVNLNSVREDLLRQLSSEG-TGA-----LS---STVSSSKYRLRTSVLQAPHGD-LVGCME-MAKVADLVAF 150 (795)
Q Consensus 82 V~Vvg~~~~~~~~sl~~~lvk~~~~~~-~~~-----g~---~tv~~~r~k~Ritfie~~~~d-l~~~LD-~aKvADlVll 150 (795)
|+|+|.++.+.. +| +..|.... ... +. .++..+..+-++.++.++-.. ..++.. ..+-||.+||
T Consensus 4 iv~vG~~~vGKT-sl----i~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~il 78 (178)
T cd04131 4 IVVVGDVQCGKT-AL----LQVFAKDCYPETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLI 78 (178)
T ss_pred EEEECCCCCCHH-HH----HHHHHhCcCCCCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEE
Confidence 789999998886 67 44443211 111 11 123344445677788775222 223322 3467999999
Q ss_pred eeeCCCccccccccccChHHHHHHHHHHhcC-CCceEEEeccCCc
Q 003796 151 VASASSFSEESMSYYIDSFGNQCLSVFRSLG-LPSTAVLIRDLPT 194 (795)
Q Consensus 151 ~idas~g~~~~~~~~fe~eg~e~L~~l~aqG-~P~vigVl~~Ld~ 194 (795)
++|.+.. ..|+.--...+..++.+. -..++.|.++.|.
T Consensus 79 vfdit~~------~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL 117 (178)
T cd04131 79 CFDISRP------ETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDL 117 (178)
T ss_pred EEECCCh------hhHHHHHHHHHHHHHHHCCCCCEEEEEEChhh
Confidence 9998742 335432223344444432 1234556677764
No 274
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=43.17 E-value=39 Score=38.12 Aligned_cols=64 Identities=16% Similarity=0.171 Sum_probs=52.9
Q ss_pred eeeEEEEeCCCCC---hHHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc
Q 003796 122 RLRTSVLQAPHGD---LVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT 194 (795)
Q Consensus 122 k~Ritfie~~~~d---l~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~ 194 (795)
||+|.+..+| .- ...|.--|.-||++|++|||..| +-+.|..=.-++...|+..++..++.+|.
T Consensus 85 KRkFIiADTP-GHeQYTRNMaTGASTadlAIlLVDAR~G--------vl~QTrRHs~I~sLLGIrhvvvAVNKmDL 151 (431)
T COG2895 85 KRKFIIADTP-GHEQYTRNMATGASTADLAILLVDARKG--------VLEQTRRHSFIASLLGIRHVVVAVNKMDL 151 (431)
T ss_pred cceEEEecCC-cHHHHhhhhhcccccccEEEEEEecchh--------hHHHhHHHHHHHHHhCCcEEEEEEeeecc
Confidence 6787777776 44 45688889999999999999966 77778877777888899999999998885
No 275
>PTZ00388 40S ribosomal protein S8-like; Provisional
Probab=42.24 E-value=52 Score=33.97 Aligned_cols=76 Identities=18% Similarity=0.318 Sum_probs=51.5
Q ss_pred EeeeeeeeeeeeeccCCCCCCceEEecccCCC--ceEEEEEEeecCCC--CccEEEEEeCCCC---CCCeEEEEeEEecc
Q 003796 623 HVGFRQFVARPIFSSDNMNSDKHKMERFLHAG--CFSVASIYAPICFP--PLPLIVLKSADGG---VAPAVAAVGSLRSI 695 (795)
Q Consensus 623 s~GwRRFq~~PifS~~~~~~~r~k~~ky~~~~--~~~~AtfygPi~~~--~t~vl~f~~~~~~---~~~ri~atG~vl~~ 695 (795)
.-+|.|..|.|.|--++-..-=-|||||+.+- ..-.|.++-|-.=. ..+++.+.....+ ....++--|+|+++
T Consensus 106 ~k~WkRmvtk~tfvg~~ftrkppk~erfiRp~glr~~~AnVt~p~~~~t~~~kIi~V~kNPan~~Ytr~nvITKGTIIEt 185 (223)
T PTZ00388 106 KKSWKRLVNKVTFVGEDFTRKPPKYERFIRPTGLRFKKAHVTHPELKTTFYLDIIGVKKNPQSNLYTSLGVITKGTIIEV 185 (223)
T ss_pred ccchhheeccceecCCCcccCCcccccccccchhhcceeEEeccccCcEEEEEEEEEeeCCCChhhhhcCceeeeeEEEe
Confidence 34799999999998754333356899999775 34556666664332 4566655554433 45668888999987
Q ss_pred CCc
Q 003796 696 DPD 698 (795)
Q Consensus 696 d~~ 698 (795)
|-+
T Consensus 186 nvs 188 (223)
T PTZ00388 186 NVS 188 (223)
T ss_pred ehh
Confidence 654
No 276
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.07 E-value=14 Score=42.01 Aligned_cols=58 Identities=16% Similarity=0.133 Sum_probs=38.9
Q ss_pred eeeEEEEeCCC--------CChHHHHHHHhh--hceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEE---
Q 003796 122 RLRTSVLQAPH--------GDLVGCMEMAKV--ADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVL--- 188 (795)
Q Consensus 122 k~Ritfie~~~--------~dl~~~LD~aKv--ADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigV--- 188 (795)
|-++-+|.|+. .=+..|+++++. -|.||||+||+.|.+.+ -|+.+|-..++|
T Consensus 181 ke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae---------------~Qa~aFk~~vdvg~v 245 (483)
T KOG0780|consen 181 KENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAE---------------AQARAFKETVDVGAV 245 (483)
T ss_pred hcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHH---------------HHHHHHHHhhccceE
Confidence 46777777753 124567888776 69999999999883221 245555555544
Q ss_pred -eccCCc
Q 003796 189 -IRDLPT 194 (795)
Q Consensus 189 -l~~Ld~ 194 (795)
||.||.
T Consensus 246 IlTKlDG 252 (483)
T KOG0780|consen 246 ILTKLDG 252 (483)
T ss_pred EEEeccc
Confidence 899997
No 277
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=41.14 E-value=1.5e+02 Score=32.32 Aligned_cols=30 Identities=13% Similarity=0.104 Sum_probs=21.2
Q ss_pred CCCCCEEEEEecCCCccChhhHHHHHHHhhc
Q 003796 75 IASPPRVIVLFGLSASVNLNSVREDLLRQLS 105 (795)
Q Consensus 75 ~~~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~ 105 (795)
..+.+.+|+|+|++++++. +++..|...+.
T Consensus 30 ~~~~~~~i~i~G~~G~GKt-tl~~~l~~~~~ 59 (300)
T TIGR00750 30 YTGNAHRVGITGTPGAGKS-TLLEALGMELR 59 (300)
T ss_pred ccCCceEEEEECCCCCCHH-HHHHHHHHHHH
Confidence 4567899999999998775 45454455543
No 278
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=40.81 E-value=41 Score=33.78 Aligned_cols=40 Identities=10% Similarity=0.007 Sum_probs=26.6
Q ss_pred ceEEEeeeCCCccccccccccChHHHHHHHH--HHhcCCCceEEEeccCCc
Q 003796 146 DLVAFVASASSFSEESMSYYIDSFGNQCLSV--FRSLGLPSTAVLIRDLPT 194 (795)
Q Consensus 146 DlVll~idas~g~~~~~~~~fe~eg~e~L~~--l~aqG~P~vigVl~~Ld~ 194 (795)
|+||+|+||... +...-.+++.. ++..+-| +|.||+..|.
T Consensus 1 DvVl~VvDar~p--------~~~~~~~i~~~~~l~~~~kp-~IlVlNK~DL 42 (172)
T cd04178 1 DVILEVLDARDP--------LGCRCPQVEEAVLQAGGNKK-LVLVLNKIDL 42 (172)
T ss_pred CEEEEEEECCCC--------CCCCCHHHHHHHHhccCCCC-EEEEEehhhc
Confidence 899999999853 33333455555 5555555 5668888875
No 279
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=40.42 E-value=81 Score=35.04 Aligned_cols=32 Identities=22% Similarity=0.258 Sum_probs=25.3
Q ss_pred eEEEEeCCCCC---------h-HHHHHHHhhhceEEEeeeCCC
Q 003796 124 RTSVLQAPHGD---------L-VGCMEMAKVADLVAFVASASS 156 (795)
Q Consensus 124 Ritfie~~~~d---------l-~~~LD~aKvADlVll~idas~ 156 (795)
.++++..+ .- + +..|+..+-||.+|+|+|++.
T Consensus 70 ~i~l~D~a-Glv~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~ 111 (318)
T cd01899 70 PVELIDVA-GLVPGAHEGKGLGNKFLDDLRDADALIHVVDASG 111 (318)
T ss_pred eEEEEECC-CCCCCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 57888776 32 2 468889999999999999964
No 280
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=40.19 E-value=61 Score=39.94 Aligned_cols=61 Identities=15% Similarity=0.236 Sum_probs=50.1
Q ss_pred eeEEEEeCCCCChH---HHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCC
Q 003796 123 LRTSVLQAPHGDLV---GCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLP 193 (795)
Q Consensus 123 ~Ritfie~~~~dl~---~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld 193 (795)
.+|.||-+| .-+. .+--+.+|+|-+|+|+||..| ++..|+-.++.+.-.++|+++.| +.+|
T Consensus 76 ~~iNlIDTP-GHVDFt~EV~rslrvlDgavvVvdaveG--------V~~QTEtv~rqa~~~~vp~i~fi-NKmD 139 (697)
T COG0480 76 YRINLIDTP-GHVDFTIEVERSLRVLDGAVVVVDAVEG--------VEPQTETVWRQADKYGVPRILFV-NKMD 139 (697)
T ss_pred eEEEEeCCC-CccccHHHHHHHHHhhcceEEEEECCCC--------eeecHHHHHHHHhhcCCCeEEEE-ECcc
Confidence 799999997 5433 345567899999999999965 88999999999999999998765 4444
No 281
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=40.15 E-value=2.2e+02 Score=28.60 Aligned_cols=101 Identities=12% Similarity=0.030 Sum_probs=54.1
Q ss_pred EEEecCCCccChhhHHHHHHHhhc-cCCC-----CCcc---eEEEecCceeeEEEEeCCCCC-hHHHHH-HHhhhceEEE
Q 003796 82 IVLFGLSASVNLNSVREDLLRQLS-SEGT-----GALS---STVSSSKYRLRTSVLQAPHGD-LVGCME-MAKVADLVAF 150 (795)
Q Consensus 82 V~Vvg~~~~~~~~sl~~~lvk~~~-~~~~-----~~g~---~tv~~~r~k~Ritfie~~~~d-l~~~LD-~aKvADlVll 150 (795)
|+|+|.++.+.. +| +..|. +.-. +.+. .++......-++.++.+.-.+ ..++.. ..+=||.+||
T Consensus 8 ivvvGd~~vGKT-sl----i~~~~~~~f~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~il 82 (182)
T cd04172 8 IVVVGDSQCGKT-AL----LHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI 82 (182)
T ss_pred EEEECCCCCCHH-HH----HHHHHhCCCCCccCCceeeeeEEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEEE
Confidence 889999998876 66 44332 2111 1111 223344445677788775222 333333 2456999999
Q ss_pred eeeCCCccccccccccChHHHHHHHHHHhc--CCCceEEEeccCCc
Q 003796 151 VASASSFSEESMSYYIDSFGNQCLSVFRSL--GLPSTAVLIRDLPT 194 (795)
Q Consensus 151 ~idas~g~~~~~~~~fe~eg~e~L~~l~aq--G~P~vigVl~~Ld~ 194 (795)
++|.+.. ..|+.--...+..++.+ +. .++.|.+..|.
T Consensus 83 vyDit~~------~Sf~~~~~~w~~~i~~~~~~~-piilVgNK~DL 121 (182)
T cd04172 83 CFDISRP------ETLDSVLKKWKGEIQEFCPNT-KMLLVGCKSDL 121 (182)
T ss_pred EEECCCH------HHHHHHHHHHHHHHHHHCCCC-CEEEEeEChhh
Confidence 9998742 23433222333344433 33 34556677664
No 282
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=40.07 E-value=2.5e+02 Score=24.84 Aligned_cols=72 Identities=17% Similarity=0.153 Sum_probs=43.3
Q ss_pred EEEEecCCCccChhhHHHHHHHhhccCCCCCcceEEE-ecCceeeEEEEeCCCCChHHHHHHHhhhceEEEeeeCCC
Q 003796 81 VIVLFGLSASVNLNSVREDLLRQLSSEGTGALSSTVS-SSKYRLRTSVLQAPHGDLVGCMEMAKVADLVAFVASASS 156 (795)
Q Consensus 81 iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~~g~~tv~-~~r~k~Ritfie~~~~dl~~~LD~aKvADlVll~idas~ 156 (795)
+|+|.+..+.+-...+...|...+...+. ++.+. ... .-.+.++.||+..-.....+...||.+|++++++.
T Consensus 1 ~i~~~~~kgG~Gkst~~~~la~~~~~~~~---~vl~~d~d~-~~d~viiD~p~~~~~~~~~~l~~ad~viv~~~~~~ 73 (104)
T cd02042 1 VIAVANQKGGVGKTTTAVNLAAALARRGK---RVLLIDLDP-QYDYIIIDTPPSLGLLTRNALAAADLVLIPVQPSP 73 (104)
T ss_pred CEEEEeCCCCcCHHHHHHHHHHHHHhCCC---cEEEEeCCC-CCCEEEEeCcCCCCHHHHHHHHHCCEEEEeccCCH
Confidence 47788877644333444444555544322 12221 221 14677888875544456688899999999999874
No 283
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=39.85 E-value=2.6e+02 Score=33.91 Aligned_cols=98 Identities=14% Similarity=0.123 Sum_probs=53.0
Q ss_pred eeEEEEeCCC-CChHHH------H-HH--HhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccC
Q 003796 123 LRTSVLQAPH-GDLVGC------M-EM--AKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDL 192 (795)
Q Consensus 123 ~Ritfie~~~-~dl~~~------L-D~--aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~L 192 (795)
..+.++..|- .++.+. . +. ..-+|+|++++|++. ++.+-+ ++..+...|.| ++.|++..
T Consensus 41 ~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~VvDat~---------ler~l~-l~~ql~~~~~P-iIIVlNK~ 109 (591)
T TIGR00437 41 EDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNVVDASN---------LERNLY-LTLQLLELGIP-MILALNLV 109 (591)
T ss_pred eEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEEecCCc---------chhhHH-HHHHHHhcCCC-EEEEEehh
Confidence 4678888872 122221 1 11 235899999999984 443333 33334457877 56678888
Q ss_pred Ccchhhh-HHHHHHHHhhcccccCCCCeeEEeCC--HHHHHHHHHHHh
Q 003796 193 PTDLKKR-KDLKKMCISSLTSEFPEDCKFYAADT--KDELHKFLWLFK 237 (795)
Q Consensus 193 d~~~Kk~-~~~kK~lk~~f~~ef~~~~Klf~l~~--~~E~~nL~R~Is 237 (795)
|...++. ....+.+.+.+ +.+++..|. ...+..|...|.
T Consensus 110 Dl~~~~~i~~d~~~L~~~l------g~pvv~tSA~tg~Gi~eL~~~i~ 151 (591)
T TIGR00437 110 DEAEKKGIRIDEEKLEERL------GVPVVPTSATEGRGIERLKDAIR 151 (591)
T ss_pred HHHHhCCChhhHHHHHHHc------CCCEEEEECCCCCCHHHHHHHHH
Confidence 8511211 11223344333 367888773 333555555554
No 284
>PRK04337 50S ribosomal protein L35Ae; Validated
Probab=39.01 E-value=44 Score=30.08 Aligned_cols=53 Identities=19% Similarity=0.277 Sum_probs=36.4
Q ss_pred eeeEEEeec-CCChhhcccccccee--eeccc--ccceeeCCCCCCceeEEEeccccc
Q 003796 716 KLKAIVRYM-FHNPEDVRWFKPVEV--WTKCG--RRGRIKEPVGTHGAMKCVFNGILQ 768 (795)
Q Consensus 716 K~tA~Ir~M-F~n~~dV~~Fk~a~L--~TksG--irG~IK~~lgt~G~fka~Fe~~i~ 768 (795)
-|||.||== .++.+|..+|-|-.+ ..+.| |.|.|..+-|..|.+||.|...|-
T Consensus 19 ~~~aLlkiegv~~~~~a~fylGKrv~yvyk~grviwGKItR~HGnsGvVrAkF~~nLP 76 (87)
T PRK04337 19 NRQVIIKPLGVDDREEAAKLIGRKVIWKDPTGNKYVGKIVRVHGNRGEVRARFKPGLP 76 (87)
T ss_pred CceEEEEEcCcCCHHHHHhhcCceEEEEeCCCCEEEEEEEeeeCCCceEEEEECCCCC
Confidence 345555533 566777777755433 33334 569999999999999999987653
No 285
>PRK12289 GTPase RsgA; Reviewed
Probab=38.86 E-value=99 Score=34.90 Aligned_cols=82 Identities=13% Similarity=0.063 Sum_probs=48.7
Q ss_pred HhhhceEEEeeeCCCccccccccccCh-HHHHHHHHHHhcCCCceEEEeccCCcchhhhHHHHHHHHhhcccccCCCCee
Q 003796 142 AKVADLVAFVASASSFSEESMSYYIDS-FGNQCLSVFRSLGLPSTAVLIRDLPTDLKKRKDLKKMCISSLTSEFPEDCKF 220 (795)
Q Consensus 142 aKvADlVll~idas~g~~~~~~~~fe~-eg~e~L~~l~aqG~P~vigVl~~Ld~~~Kk~~~~kK~lk~~f~~ef~~~~Kl 220 (795)
+.=+|.||+|+|+.. ..|+. .-..+|..+...|+|- +.||+..|. .. ..+.. .+..++..+ |..+
T Consensus 87 ~aNvD~vLlV~d~~~-------p~~~~~~LdR~L~~a~~~~ip~-ILVlNK~DL-v~-~~~~~-~~~~~~~~~---g~~v 152 (352)
T PRK12289 87 VANADQILLVFALAE-------PPLDPWQLSRFLVKAESTGLEI-VLCLNKADL-VS-PTEQQ-QWQDRLQQW---GYQP 152 (352)
T ss_pred hhcCCEEEEEEECCC-------CCCCHHHHHHHHHHHHHCCCCE-EEEEEchhc-CC-hHHHH-HHHHHHHhc---CCeE
Confidence 455999999999873 22554 3477888888889875 556887775 11 11122 222333222 4578
Q ss_pred EEeCCH--HHHHHHHHHHh
Q 003796 221 YAADTK--DELHKFLWLFK 237 (795)
Q Consensus 221 f~l~~~--~E~~nL~R~Is 237 (795)
|.+|.. ..+..|...|.
T Consensus 153 ~~iSA~tg~GI~eL~~~L~ 171 (352)
T PRK12289 153 LFISVETGIGLEALLEQLR 171 (352)
T ss_pred EEEEcCCCCCHHHHhhhhc
Confidence 888742 34556666653
No 286
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=38.67 E-value=80 Score=35.87 Aligned_cols=72 Identities=11% Similarity=0.111 Sum_probs=45.2
Q ss_pred EEEEEecCCCccChhhHHHHHHHhhccCCCCC------------cceEEEecCc-------e------eeEEEEeCCC--
Q 003796 80 RVIVLFGLSASVNLNSVREDLLRQLSSEGTGA------------LSSTVSSSKY-------R------LRTSVLQAPH-- 132 (795)
Q Consensus 80 ~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~~------------g~~tv~~~r~-------k------~Ritfie~~~-- 132 (795)
.-|++||+|+.+.+ +| ++.+|+..... |.+.+...|+ + ..+.|+-.|-
T Consensus 3 ~~vgIVG~PNvGKS-TL----fnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~ 77 (364)
T PRK09601 3 LKCGIVGLPNVGKS-TL----FNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLV 77 (364)
T ss_pred cEEEEECCCCCCHH-HH----HHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCC
Confidence 35899999998885 67 56666544211 3333332211 1 2477776652
Q ss_pred --CC-----hHHHHHHHhhhceEEEeeeCCC
Q 003796 133 --GD-----LVGCMEMAKVADLVAFVASASS 156 (795)
Q Consensus 133 --~d-----l~~~LD~aKvADlVll~idas~ 156 (795)
.. -+..|+..+=||++|+|||++.
T Consensus 78 ~~a~~g~glg~~fL~~i~~aD~li~VVd~f~ 108 (364)
T PRK09601 78 KGASKGEGLGNQFLANIREVDAIVHVVRCFE 108 (364)
T ss_pred CCCChHHHHHHHHHHHHHhCCEEEEEEeCCc
Confidence 01 1357888899999999999973
No 287
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=37.75 E-value=4.8e+02 Score=30.17 Aligned_cols=130 Identities=17% Similarity=0.304 Sum_probs=79.3
Q ss_pred hceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc--c--hhh-hHHHHHHHHhhcccccC----
Q 003796 145 ADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT--D--LKK-RKDLKKMCISSLTSEFP---- 215 (795)
Q Consensus 145 ADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~--~--~Kk-~~~~kK~lk~~f~~ef~---- 215 (795)
-|++||++-|..| ..--|-|=|-++-|-+||.+ .|+|..|. + ++. ..+++..||. . ..+|
T Consensus 227 ~dYglLvVaAddG--------~~~~tkEHLgi~~a~~lPvi-VvvTK~D~~~ddr~~~v~~ei~~~Lk~-v-~Rip~~vk 295 (527)
T COG5258 227 VDYGLLVVAADDG--------VTKMTKEHLGIALAMELPVI-VVVTKIDMVPDDRFQGVVEEISALLKR-V-GRIPLIVK 295 (527)
T ss_pred cceEEEEEEccCC--------cchhhhHhhhhhhhhcCCEE-EEEEecccCcHHHHHHHHHHHHHHHHH-h-cccceeee
Confidence 3677777777654 66678999999999999954 55676664 1 121 2334444443 2 1222
Q ss_pred ---------------C-CCeeEEeCCH-HH-HHHHHHHHhhccccCcccccCCCeE-EEEeeEeccCCCCCCCceEEEEE
Q 003796 216 ---------------E-DCKFYAADTK-DE-LHKFLWLFKEQRLTVPHWRNQRPFL-MAQKVDVVADDCNSGKCTLLLHG 276 (795)
Q Consensus 216 ---------------~-~~Klf~l~~~-~E-~~nL~R~Is~~k~r~l~WR~~rpYm-Ladr~e~~~~~~~~~~~~l~v~G 276 (795)
. -.-+|+.|+- -+ .--|.++++...++. .|-+.-|++ .+|++--.+. . -.+|.|
T Consensus 296 ~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f~~Lp~rr-~~~d~g~flmYId~iYsVtG-----V-GtVvsG 368 (527)
T COG5258 296 DTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFFLLLPKRR-RWDDEGPFLMYIDKIYSVTG-----V-GTVVSG 368 (527)
T ss_pred ccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHHHhCCccc-ccCCCCCeEEEEEeeEEEee-----e-EEEEee
Confidence 0 1346777752 22 445677777777766 998888665 4666543321 2 355677
Q ss_pred EEeCCCCCCCCeEEeC
Q 003796 277 YLRAHCLSVNQLVHIS 292 (795)
Q Consensus 277 yvRG~~l~~n~lVHIp 292 (795)
-|.-.-|..|..|-|-
T Consensus 369 sV~~G~l~~gd~vllG 384 (527)
T COG5258 369 SVKSGILHVGDTVLLG 384 (527)
T ss_pred eEEeeeeccCCEEEEc
Confidence 7765567888777663
No 288
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=37.67 E-value=69 Score=37.56 Aligned_cols=90 Identities=19% Similarity=0.181 Sum_probs=48.6
Q ss_pred CEEEEEecCCCccChhhHHHHHHHhhccCCCCC-------------cceEEEecCceeeEE----EEeCCCCChHHHH--
Q 003796 79 PRVIVLFGLSASVNLNSVREDLLRQLSSEGTGA-------------LSSTVSSSKYRLRTS----VLQAPHGDLVGCM-- 139 (795)
Q Consensus 79 P~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~~-------------g~~tv~~~r~k~Rit----fie~~~~dl~~~L-- 139 (795)
+.-|||+|+|+.++. || +..+.+.+... -.+++ ..++-+++ +-+ ..+|.-.+|
T Consensus 268 gl~iaIvGrPNvGKS-SL----lNaL~~~drsIVSpv~GTTRDaiea~v~~--~G~~v~L~DTAGiRe-~~~~~iE~~gI 339 (531)
T KOG1191|consen 268 GLQIAIVGRPNVGKS-SL----LNALSREDRSIVSPVPGTTRDAIEAQVTV--NGVPVRLSDTAGIRE-ESNDGIEALGI 339 (531)
T ss_pred CCeEEEEcCCCCCHH-HH----HHHHhcCCceEeCCCCCcchhhheeEeec--CCeEEEEEecccccc-ccCChhHHHhH
Confidence 356899999998875 78 66665544221 22332 12222221 011 124444443
Q ss_pred ----HHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCc
Q 003796 140 ----EMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPS 184 (795)
Q Consensus 140 ----D~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~ 184 (795)
-.++.||+++||+||..+ .-.+--.+.++|+.-|.-.
T Consensus 340 ~rA~k~~~~advi~~vvda~~~--------~t~sd~~i~~~l~~~~~g~ 380 (531)
T KOG1191|consen 340 ERARKRIERADVILLVVDAEES--------DTESDLKIARILETEGVGL 380 (531)
T ss_pred HHHHHHHhhcCEEEEEeccccc--------ccccchHHHHHHHHhccce
Confidence 357789999999999643 1112244555665555443
No 289
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=36.20 E-value=97 Score=32.29 Aligned_cols=64 Identities=13% Similarity=0.238 Sum_probs=45.0
Q ss_pred eeEEEEeCCCCChHHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc
Q 003796 123 LRTSVLQAPHGDLVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT 194 (795)
Q Consensus 123 ~Ritfie~~~~dl~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~ 194 (795)
-.+.+|.||+.--.....+...||.||+++.++.. .+ .....++..++..|...+..|++..+.
T Consensus 112 ~D~viiD~p~~~~~~~~~~l~~aD~viiv~~~~~~-------s~-~~~~~~~~~l~~~~~~~~~iviN~~~~ 175 (261)
T TIGR01968 112 FDYVIIDCPAGIESGFRNAVAPADEAIVVTTPEVS-------AV-RDADRVIGLLEAKGIEKIHLIVNRLRP 175 (261)
T ss_pred CCEEEEeCCCCcCHHHHHHHHhCCeEEEEcCCCcH-------HH-HHHHHHHHHHHHcCCCceEEEEeCcCc
Confidence 35678888854445567788999999999998742 11 245678888888887666556666654
No 290
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=35.96 E-value=3.2e+02 Score=28.08 Aligned_cols=87 Identities=8% Similarity=0.067 Sum_probs=45.9
Q ss_pred EEEecCCCccChhhHHHHHHHhhccCCC-CC-----cc-e---EEEec-----CceeeEEEEeCCC-CChHHHHH-HHhh
Q 003796 82 IVLFGLSASVNLNSVREDLLRQLSSEGT-GA-----LS-S---TVSSS-----KYRLRTSVLQAPH-GDLVGCME-MAKV 144 (795)
Q Consensus 82 V~Vvg~~~~~~~~sl~~~lvk~~~~~~~-~~-----g~-~---tv~~~-----r~k~Ritfie~~~-~dl~~~LD-~aKv 144 (795)
|+++|.++.+.. +| +..|..... .. |. + ++... ...-.+.+...+- ....++.. ..+-
T Consensus 3 IvlvGd~gVGKT-SL----i~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ 77 (202)
T cd04102 3 VLVVGDSGVGKS-SL----VHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQ 77 (202)
T ss_pred EEEECCCCCCHH-HH----HHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCc
Confidence 789999998886 77 555533221 11 21 0 11111 1223455665542 23444433 3567
Q ss_pred hceEEEeeeCCCccccccccccChHHHHHHHH
Q 003796 145 ADLVAFVASASSFSEESMSYYIDSFGNQCLSV 176 (795)
Q Consensus 145 ADlVll~idas~g~~~~~~~~fe~eg~e~L~~ 176 (795)
||.+|||+|.+.. ++...+..|-.++++.
T Consensus 78 ad~iIlVyDvtn~---~Sf~~l~~W~~ei~~~ 106 (202)
T cd04102 78 VNGIILVHDLTNR---KSSQNLQRWSLEALNK 106 (202)
T ss_pred CCEEEEEEECcCh---HHHHHHHHHHHHHHHh
Confidence 9999999998854 1111234566666653
No 291
>CHL00071 tufA elongation factor Tu
Probab=35.23 E-value=5.9e+02 Score=29.14 Aligned_cols=126 Identities=9% Similarity=0.016 Sum_probs=70.6
Q ss_pred CCCCCCcEEEEEEecCchhHHhhhccccCCCcEEEEecc-cccceeeEEEEEEEecCC--CcccCCCCCeEEEEeeeeee
Q 003796 553 DSVPASLYVRLHIKEVPAGIAHRLCEMAERSPLIASGLL-QHESKMSVLHFSVKKHDT--YDAPIKAKEELIFHVGFRQF 629 (795)
Q Consensus 553 ~g~~~G~yVri~i~~vp~~~~~~~~~~~~~~Plil~gLl-~~E~k~svv~~~ikrh~~--~~~~lKSkdpLi~s~GwRRF 629 (795)
+.+.+|..|.|.|.++..+-+. .=.||+.-- +.....=..++.+-.|.. ...||+.....+++||-.+-
T Consensus 277 ~~a~aGd~v~i~l~~i~~~~i~--------~G~vl~~~~~~~~~~~f~a~i~~l~~~~~~~~~~i~~g~~~~~~~gt~~~ 348 (409)
T CHL00071 277 DEGLAGDNVGILLRGIQKEDIE--------RGMVLAKPGTITPHTKFEAQVYILTKEEGGRHTPFFPGYRPQFYVRTTDV 348 (409)
T ss_pred CEECCCceeEEEEcCCCHHHcC--------CeEEEecCCCCCcceEEEEEEEEEecccCCccccccCCceEEEEEcccEE
Confidence 4588999999999987653221 223444331 111111123333333321 15789999999999998886
Q ss_pred eeeeeeccCCCCCCceEEecccCCCceEEEEEE--eecCCCCccEEEEEeCCCCCCCeEEEEeEEecc
Q 003796 630 VARPIFSSDNMNSDKHKMERFLHAGCFSVASIY--APICFPPLPLIVLKSADGGVAPAVAAVGSLRSI 695 (795)
Q Consensus 630 q~~PifS~~~~~~~r~k~~ky~~~~~~~~Atfy--gPi~~~~t~vl~f~~~~~~~~~ri~atG~vl~~ 695 (795)
...-..=. ...+ .--+++.++..|+|.|- .|+++-..+-++++.. -+.+|.|.|+++
T Consensus 349 ~~~i~~i~-~~~~---~~~~~l~~g~~a~v~l~~~~pi~~e~~~rfilR~~-----~~tig~G~V~~~ 407 (409)
T CHL00071 349 TGKIESFT-ADDG---SKTEMVMPGDRIKMTVELIYPIAIEKGMRFAIREG-----GRTVGAGVVSKI 407 (409)
T ss_pred EEEEEEEc-ccCC---CCCcEecCCCEEEEEEEECCeEEEeeCCEEEEecC-----CeEEEEEEEEEe
Confidence 54443222 1111 22356788888877765 4554433333444422 368888888753
No 292
>PF05729 NACHT: NACHT domain
Probab=34.96 E-value=1.1e+02 Score=29.14 Aligned_cols=28 Identities=29% Similarity=0.331 Sum_probs=18.5
Q ss_pred EEEEEecCCCccChhhHHHHHHHhhccCC
Q 003796 80 RVIVLFGLSASVNLNSVREDLLRQLSSEG 108 (795)
Q Consensus 80 ~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~ 108 (795)
++|.|.|.+++++. .+...++..+....
T Consensus 1 r~l~I~G~~G~GKS-tll~~~~~~~~~~~ 28 (166)
T PF05729_consen 1 RVLWISGEPGSGKS-TLLRKLAQQLAEEE 28 (166)
T ss_pred CEEEEECCCCCChH-HHHHHHHHHHHhcC
Confidence 47899999998886 44344455554433
No 293
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=34.49 E-value=2.1e+02 Score=29.97 Aligned_cols=25 Identities=24% Similarity=0.328 Sum_probs=18.7
Q ss_pred CCCCEEEEEecCCCccChhhHHHHHH
Q 003796 76 ASPPRVIVLFGLSASVNLNSVREDLL 101 (795)
Q Consensus 76 ~~pP~iV~Vvg~~~~~~~~sl~~~lv 101 (795)
+.|-.+|+|+|++.+++. .|++.|+
T Consensus 4 ~~~v~vvsv~G~~~sGKS-~llN~l~ 28 (224)
T cd01851 4 GFPVAVVSVFGPQSSGKS-FLLNHLF 28 (224)
T ss_pred CCCEEEEEEECCCCCCHH-HHHHHHh
Confidence 467788999999999885 6634433
No 294
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=34.30 E-value=64 Score=37.51 Aligned_cols=99 Identities=19% Similarity=0.214 Sum_probs=56.0
Q ss_pred CEEEEEecCCCccChhhHHHHHHHhhccCCCC---C--cce------EEEecCceeeEEEEeC-C---CCChHH------
Q 003796 79 PRVIVLFGLSASVNLNSVREDLLRQLSSEGTG---A--LSS------TVSSSKYRLRTSVLQA-P---HGDLVG------ 137 (795)
Q Consensus 79 P~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~---~--g~~------tv~~~r~k~Ritfie~-~---~~dl~~------ 137 (795)
+.=|+|+|.|+.++. || +..+.+.+.. . |.+ .+..+...-| ++.- . ..|+-.
T Consensus 217 G~kvvIiG~PNvGKS-SL----LNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~--l~DTAGiRet~d~VE~iGIeR 289 (454)
T COG0486 217 GLKVVIIGRPNVGKS-SL----LNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVR--LVDTAGIRETDDVVERIGIER 289 (454)
T ss_pred CceEEEECCCCCcHH-HH----HHHHhcCCceEecCCCCCccceEEEEEEECCEEEE--EEecCCcccCccHHHHHHHHH
Confidence 455899999998886 78 5555554421 1 221 1222322212 1211 1 133322
Q ss_pred HHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc
Q 003796 138 CMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT 194 (795)
Q Consensus 138 ~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~ 194 (795)
-.-+++=||+||+|+|++.. .+.+-..++. +.-.+.| ++.|++..|.
T Consensus 290 s~~~i~~ADlvL~v~D~~~~--------~~~~d~~~~~-~~~~~~~-~i~v~NK~DL 336 (454)
T COG0486 290 AKKAIEEADLVLFVLDASQP--------LDKEDLALIE-LLPKKKP-IIVVLNKADL 336 (454)
T ss_pred HHHHHHhCCEEEEEEeCCCC--------CchhhHHHHH-hcccCCC-EEEEEechhc
Confidence 34567789999999999952 4555566666 3344444 5667777664
No 295
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=34.09 E-value=4.4e+02 Score=27.07 Aligned_cols=100 Identities=17% Similarity=0.181 Sum_probs=50.9
Q ss_pred EEEecCCCccChhhHHHHHHHhhcc-CCCCCcceE-------EEecCceeeEEEEeCCC-CC--------hHHHHHHHhh
Q 003796 82 IVLFGLSASVNLNSVREDLLRQLSS-EGTGALSST-------VSSSKYRLRTSVLQAPH-GD--------LVGCMEMAKV 144 (795)
Q Consensus 82 V~Vvg~~~~~~~~sl~~~lvk~~~~-~~~~~g~~t-------v~~~r~k~Ritfie~~~-~d--------l~~~LD~aKv 144 (795)
|.++|.++++.. ++++.|+..-.- ......++| .... -+++++|..|- .| +..+.+++..
T Consensus 3 IlllG~tGsGKS-s~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~--g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~ 79 (212)
T PF04548_consen 3 ILLLGKTGSGKS-SLGNSILGKEVFKSGSSAKSVTQECQKYSGEVD--GRQVTVIDTPGLFDSDGSDEEIIREIKRCLSL 79 (212)
T ss_dssp EEEECSTTSSHH-HHHHHHHTSS-SS--TTTSS--SS-EEEEEEET--TEEEEEEE--SSEETTEEHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHH-HHHHHHhcccceeeccccCCcccccceeeeeec--ceEEEEEeCCCCCCCcccHHHHHHHHHHHHHh
Confidence 789999998876 664444422110 010011111 1122 26888888873 11 1234443332
Q ss_pred ----hceEEEeeeCCCccccccccccChHHHHHHHHHH---hcC-CCceEEEeccCC
Q 003796 145 ----ADLVAFVASASSFSEESMSYYIDSFGNQCLSVFR---SLG-LPSTAVLIRDLP 193 (795)
Q Consensus 145 ----ADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~---aqG-~P~vigVl~~Ld 193 (795)
-+.+||+++... |..+-...|..|+ ... +-.+|.|+||-+
T Consensus 80 ~~~g~ha~llVi~~~r---------~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d 127 (212)
T PF04548_consen 80 CSPGPHAFLLVIPLGR---------FTEEDREVLELLQEIFGEEIWKHTIVVFTHAD 127 (212)
T ss_dssp TTT-ESEEEEEEETTB----------SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGG
T ss_pred ccCCCeEEEEEEecCc---------chHHHHHHHHHHHHHccHHHHhHhhHHhhhcc
Confidence 578999999872 5444444444443 322 356888888766
No 296
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=33.92 E-value=1.3e+02 Score=25.14 Aligned_cols=22 Identities=23% Similarity=0.425 Sum_probs=16.3
Q ss_pred hHHHHHHHhhhceEEEeeeCCC
Q 003796 135 LVGCMEMAKVADLVAFVASASS 156 (795)
Q Consensus 135 l~~~LD~aKvADlVll~idas~ 156 (795)
+.++.-++-+++.|||++|.|.
T Consensus 4 ~qai~AL~hL~~~ilfi~D~Se 25 (58)
T PF06858_consen 4 MQAITALAHLADAILFIIDPSE 25 (58)
T ss_dssp HHHHHGGGGT-SEEEEEE-TT-
T ss_pred HHHHHHHHhhcceEEEEEcCCC
Confidence 4677778899999999999884
No 297
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=33.90 E-value=1.4e+02 Score=31.39 Aligned_cols=62 Identities=11% Similarity=0.169 Sum_probs=39.5
Q ss_pred eeEEEEeCCCCChHHHHHHHhhhceEEEeeeCCCccccccccccCh-HHHHHHHHHH------hcCCCceEEEeccCCc
Q 003796 123 LRTSVLQAPHGDLVGCMEMAKVADLVAFVASASSFSEESMSYYIDS-FGNQCLSVFR------SLGLPSTAVLIRDLPT 194 (795)
Q Consensus 123 ~Ritfie~~~~dl~~~LD~aKvADlVll~idas~g~~~~~~~~fe~-eg~e~L~~l~------aqG~P~vigVl~~Ld~ 194 (795)
-.+.||-||+..=..+..+...||+||..+.++. +|. .+.+++..+. ..|+|-. .|++..+.
T Consensus 84 yD~iiID~pp~~~~~~~~al~~aD~vliP~~ps~---------~d~~~~~~~~~~v~~~~~~~~~~l~~~-iv~~~~~~ 152 (231)
T PRK13849 84 FDYALADTHGGSSELNNTIIASSNLLLIPTMLTP---------LDIDEALSTYRYVIELLLSENLAIPTA-ILRQRVPV 152 (231)
T ss_pred CCEEEEeCCCCccHHHHHHHHHCCEEEEeccCcH---------HHHHHHHHHHHHHHHHHHHhCCCCCeE-EEEEeccc
Confidence 3778899985444445667899999999998874 554 3334433332 2366654 45676653
No 298
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=33.65 E-value=73 Score=31.95 Aligned_cols=48 Identities=10% Similarity=0.034 Sum_probs=28.2
Q ss_pred HHHHHHH-hhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc
Q 003796 136 VGCMEMA-KVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT 194 (795)
Q Consensus 136 ~~~LD~a-KvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~ 194 (795)
.+++... +=||+||+|+|++.. ...+-.++ . ....+ ..++.|++..|.
T Consensus 25 ~~~l~~~~~~ad~il~VvD~~~~--------~~~~~~~l-~-~~~~~-~~~ilV~NK~Dl 73 (190)
T cd01855 25 LNLLSSISPKKALVVHVVDIFDF--------PGSLIPRL-R-LFGGN-NPVILVGNKIDL 73 (190)
T ss_pred HHHHHhcccCCcEEEEEEECccC--------CCccchhH-H-HhcCC-CcEEEEEEchhc
Confidence 5555544 669999999999842 11122233 1 12234 356678888774
No 299
>cd06375 PBP1_mGluR_groupII Ligand binding domain of the group II metabotropic glutamate receptor. Ligand binding domain of the group II metabotropic glutamate receptor, a family that contains mGlu2R and mGlu3R, all of which inhibit adenylyl cyclase. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes
Probab=32.92 E-value=5.5e+02 Score=29.73 Aligned_cols=156 Identities=15% Similarity=0.049 Sum_probs=74.4
Q ss_pred CCCEEEEEecCCCccChhhHHHHHHHhhccCCCCC---cce-EEEecCceeeEEEEeCCCCCh---HHHHHHHhh--hce
Q 003796 77 SPPRVIVLFGLSASVNLNSVREDLLRQLSSEGTGA---LSS-TVSSSKYRLRTSVLQAPHGDL---VGCMEMAKV--ADL 147 (795)
Q Consensus 77 ~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~~---g~~-tv~~~r~k~Ritfie~~~~dl---~~~LD~aKv--ADl 147 (795)
.+|.++||||+..+.....+ ...+...+... +.. ...+.+.+-...|-.+| .|- .+|+|+++- .--
T Consensus 102 ~~~~V~aVIG~~~S~~s~av----a~~~~~~~IP~Is~~sts~~Ls~~~~~~~ffRt~p-sd~~qa~ai~~ll~~~~W~~ 176 (458)
T cd06375 102 SPLAIAGVIGGSYSSVSIQV----ANLLRLFQIPQISYASTSAKLSDKSRYDYFARTVP-PDFYQAKAMAEILRFFNWTY 176 (458)
T ss_pred CCCCeEEEEcCCCchHHHHH----HHHhhhccccceeeccCChhhcccccCCCeEEecC-CcHHHHHHHHHHHHHCCCeE
Confidence 45679999999887655444 33333333321 111 11112211245566676 542 335555543 233
Q ss_pred EEEeee-CCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchhhhHHHHHHHHhhcccccCCCCeeEEeC-C
Q 003796 148 VAFVAS-ASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKKRKDLKKMCISSLTSEFPEDCKFYAAD-T 225 (795)
Q Consensus 148 Vll~id-as~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~~~Kk~~~~kK~lk~~f~~ef~~~~Klf~l~-~ 225 (795)
|.++.+ ..+| ......|...++.+|+.-+. ...++.. ....+....+++-... .+++++.+. .
T Consensus 177 Vaii~~~~~yG---------~~~~~~~~~~~~~~gi~i~~--~~~i~~~-~~~~d~~~~l~~l~~~---~~a~vVvl~~~ 241 (458)
T cd06375 177 VSTVASEGDYG---------ETGIEAFEQEARLRNICIAT--SEKVGRS-ADRKSYDSVIRKLLQK---PNARVVVLFTR 241 (458)
T ss_pred EEEEEeCchHH---------HHHHHHHHHHHHHCCeeEEE--EEEecCC-CCHHHHHHHHHHHhcc---CCCEEEEEecC
Confidence 444443 3332 12345566667778854222 1222210 1112222222221111 367865554 4
Q ss_pred HHHHHHHHHHHhhccccCcccccCCCeEEEEeeE
Q 003796 226 KDELHKFLWLFKEQRLTVPHWRNQRPFLMAQKVD 259 (795)
Q Consensus 226 ~~E~~nL~R~Is~~k~r~l~WR~~rpYmLadr~e 259 (795)
..++..++|.+-.+... .+|+..+.+.
T Consensus 242 ~~~~~~ll~~a~~~g~~-------~~wigs~~~~ 268 (458)
T cd06375 242 SEDARELLAAAKRLNAS-------FTWVASDGWG 268 (458)
T ss_pred hHHHHHHHHHHHHcCCc-------EEEEEecccc
Confidence 67788888887666432 4566665544
No 300
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=32.27 E-value=53 Score=36.71 Aligned_cols=72 Identities=13% Similarity=0.206 Sum_probs=47.7
Q ss_pred HhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEE--eccCCcchhhhHHHHHHHHhhcccccCCCCe
Q 003796 142 AKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVL--IRDLPTDLKKRKDLKKMCISSLTSEFPEDCK 219 (795)
Q Consensus 142 aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigV--l~~Ld~~~Kk~~~~kK~lk~~f~~ef~~~~K 219 (795)
++-||+||+.+++.+ ..+++.-|+.+--+.+..| .-.+.+ .+.+.+...++.++| +.+
T Consensus 69 ~~~ad~iv~avPs~~-------------~r~v~~~l~~~l~~~~~iv~~sKGie~------~t~~l~seii~e~l~-~~~ 128 (329)
T COG0240 69 LDGADIIVIAVPSQA-------------LREVLRQLKPLLLKDAIIVSATKGLEP------ETGRLLSEIIEEELP-DNP 128 (329)
T ss_pred HhcCCEEEEECChHH-------------HHHHHHHHhhhccCCCeEEEEeccccC------CCcchHHHHHHHHcC-CCe
Confidence 334899999999874 4677777765555555555 234554 256667778888888 455
Q ss_pred eEEeCCHHHHHHHH
Q 003796 220 FYAADTKDELHKFL 233 (795)
Q Consensus 220 lf~l~~~~E~~nL~ 233 (795)
+.+||+++=...++
T Consensus 129 ~~vLSGPs~A~EVa 142 (329)
T COG0240 129 IAVLSGPSFAKEVA 142 (329)
T ss_pred EEEEECccHHHHHh
Confidence 99999764433333
No 301
>CHL00175 minD septum-site determining protein; Validated
Probab=31.90 E-value=1.4e+02 Score=31.90 Aligned_cols=62 Identities=13% Similarity=0.203 Sum_probs=44.9
Q ss_pred eEEEEeCCCCChHHHHHHHhhhceEEEeeeCCCccccccccccC-hHHHHHHHHHHhcCCCceEEEeccCCc
Q 003796 124 RTSVLQAPHGDLVGCMEMAKVADLVAFVASASSFSEESMSYYID-SFGNQCLSVFRSLGLPSTAVLIRDLPT 194 (795)
Q Consensus 124 Ritfie~~~~dl~~~LD~aKvADlVll~idas~g~~~~~~~~fe-~eg~e~L~~l~aqG~P~vigVl~~Ld~ 194 (795)
.+.+|.||+.--...+.+...||.||++++.+. +. .....++..++..|.+....|++..+.
T Consensus 128 D~VIiDtpp~~~~~~~~~l~~aD~viiV~~p~~---------~si~~~~~~~~~l~~~~~~~~~lvvN~~~~ 190 (281)
T CHL00175 128 DYILIDCPAGIDVGFINAIAPAQEAIVVTTPEI---------TAIRDADRVAGLLEANGIYNVKLLVNRVRP 190 (281)
T ss_pred CEEEEeCCCCCCHHHHHHHHhcCeeEEEcCCCh---------HHHHHHHHHHHHHHHcCCCceEEEEeccCh
Confidence 467788874433456677788999999998874 22 245678888999998776666777765
No 302
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=31.77 E-value=5e+02 Score=31.64 Aligned_cols=114 Identities=12% Similarity=0.129 Sum_probs=65.9
Q ss_pred CCCCCCcEEEEEEec-CchhHHhhhccccCCCcEEEEecccccceeeEEEEEEEecCCCcccCCCCCeEEEEeeeeeeee
Q 003796 553 DSVPASLYVRLHIKE-VPAGIAHRLCEMAERSPLIASGLLQHESKMSVLHFSVKKHDTYDAPIKAKEELIFHVGFRQFVA 631 (795)
Q Consensus 553 ~g~~~G~yVri~i~~-vp~~~~~~~~~~~~~~Plil~gLl~~E~k~svv~~~ikrh~~~~~~lKSkdpLi~s~GwRRFq~ 631 (795)
+.+.||..|-|.|.+ +..+-+. +=-+|+.--+.. ....+-+.++ ...||+...++.|++|=.+-.+
T Consensus 229 ~~a~aG~rval~l~g~~~~~~i~--------rGdvl~~~~~~~-~~~~~~~~l~----~~~~l~~~~~~~~~~gt~~~~~ 295 (614)
T PRK10512 229 EQAQAGQRIALNIAGDAEKEQIN--------RGDWLLADAPPE-PFTRVIVELQ----THTPLTQWQPLHIHHAASHVTG 295 (614)
T ss_pred CEEeCCCeEEEEecCCCChhhCC--------CcCEEeCCCCCc-cceeEEEEEc----CCccCCCCCEEEEEEcccEEEE
Confidence 557899999999986 6554332 111222211110 1111222232 2489999999999999655443
Q ss_pred eeeeccCCCCCCceEEecccCCCceEEEEEEeecCCCC-ccEEEEEeCCCCCCCeEEEEeEEeccCCcc
Q 003796 632 RPIFSSDNMNSDKHKMERFLHAGCFSVASIYAPICFPP-LPLIVLKSADGGVAPAVAAVGSLRSIDPDR 699 (795)
Q Consensus 632 ~PifS~~~~~~~r~k~~ky~~~~~~~~AtfygPi~~~~-t~vl~f~~~~~~~~~ri~atG~vl~~d~~r 699 (795)
.-.+- +...+-..+.-|++... .+|++ +.- +..+.+|.|.|++++|.+
T Consensus 296 ~i~~l----------------~~~~~~l~l~~p~~~~~gdr~il-r~~---s~~~tigGg~Vld~~~~~ 344 (614)
T PRK10512 296 RVSLL----------------EDNLAELVLDTPLWLADNDRLVL-RDI---SARNTLAGARVVMLNPPR 344 (614)
T ss_pred EEEEc----------------CCeEEEEEECCcccccCCCEEEE-EeC---CCCEEEEEEEEcccCCcc
Confidence 33222 12233345557876544 45554 554 357899999999988864
No 303
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=31.70 E-value=6.3e+02 Score=28.99 Aligned_cols=128 Identities=13% Similarity=0.201 Sum_probs=68.9
Q ss_pred CCCCCCcEEEEEEecCchhHHhhhccccCCCcEEEEecc--cccceeeEEEEEEEecCCCcccCCCCCeEEEEeeeeeee
Q 003796 553 DSVPASLYVRLHIKEVPAGIAHRLCEMAERSPLIASGLL--QHESKMSVLHFSVKKHDTYDAPIKAKEELIFHVGFRQFV 630 (795)
Q Consensus 553 ~g~~~G~yVri~i~~vp~~~~~~~~~~~~~~Plil~gLl--~~E~k~svv~~~ikrh~~~~~~lKSkdpLi~s~GwRRFq 630 (795)
+.+.+|..|.|.|++++..-++ +=.||+.-- +...+-=..++.+-.| +.||+..-..+|+||..|-.
T Consensus 282 ~~a~aG~~v~i~l~~i~~~~i~--------rG~vl~~~~~~~~~~~~f~a~v~~l~~---~~~i~~g~~~~~~~~t~~~~ 350 (426)
T TIGR00483 282 EQAEPGDNIGFNVRGVSKKDIR--------RGDVCGHPDNPPKVAKEFTAQIVVLQH---PGAITVGYTPVFHCHTAQIA 350 (426)
T ss_pred CEEcCCCEEEEEECCCChhhcc--------cceEEecCCCCCceeeEEEEEEEEECC---CCccCCCCeEEEEecCcEEE
Confidence 4578999999999988654322 222333221 1001111122222222 46888777777999998864
Q ss_pred e--eeeeccCCCCCCc--eEEecccCCCceEEEEEE--eecCCCC------ccEEEEEeCCCCCCCeEEEEeEEeccC
Q 003796 631 A--RPIFSSDNMNSDK--HKMERFLHAGCFSVASIY--APICFPP------LPLIVLKSADGGVAPAVAAVGSLRSID 696 (795)
Q Consensus 631 ~--~PifS~~~~~~~r--~k~~ky~~~~~~~~Atfy--gPi~~~~------t~vl~f~~~~~~~~~ri~atG~vl~~d 696 (795)
+ ..|.+.-+.+.+. -+--+++.++..+++.|- -|++.-+ .+=++++.. -+.+|-|.|+.+.
T Consensus 351 ~~i~~i~~~~~~~t~~~~~~~p~~l~~g~~a~v~l~~~~pi~~e~~~~~~~~grf~lr~~-----g~tv~~G~v~~~~ 423 (426)
T TIGR00483 351 CRFDELLKKNDPRTGQVLEENPQFLKTGDAAIVKFKPTKPMVIEAVKEIPPLGRFAIRDM-----GQTVAAGMIIDVD 423 (426)
T ss_pred EEEEEEEEEecCccccccCCCCceeCCCCEEEEEEEECCeeEEeecccCCCCccEEEEEC-----CCEEEEEEEEEee
Confidence 3 3445442322211 123368888988888875 2332211 122222222 2578899888765
No 304
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=31.57 E-value=1.7e+02 Score=31.86 Aligned_cols=45 Identities=13% Similarity=0.236 Sum_probs=32.1
Q ss_pred HhhhceEEEeeeCCCccccccccccC-hHHHHHHHHHHhcCCCceEEEeccCCc
Q 003796 142 AKVADLVAFVASASSFSEESMSYYID-SFGNQCLSVFRSLGLPSTAVLIRDLPT 194 (795)
Q Consensus 142 aKvADlVll~idas~g~~~~~~~~fe-~eg~e~L~~l~aqG~P~vigVl~~Ld~ 194 (795)
+.=+|+||+|+|+... . |. ..-..+|..+...|.| ++.|++..|.
T Consensus 76 ~anvD~vllV~d~~~p------~-~s~~~ldr~L~~~~~~~ip-~iIVlNK~DL 121 (287)
T cd01854 76 AANVDQLVIVVSLNEP------F-FNPRLLDRYLVAAEAAGIE-PVIVLTKADL 121 (287)
T ss_pred EEeCCEEEEEEEcCCC------C-CCHHHHHHHHHHHHHcCCC-EEEEEEHHHC
Confidence 4558999999999743 1 22 2345678888889988 5667887775
No 305
>cd06361 PBP1_GPC6A_like Ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor. This family includes the ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor, and its fish homolog, the 5.24 chemoreceptor. GPRC6A is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses.
Probab=31.36 E-value=6.3e+02 Score=28.68 Aligned_cols=155 Identities=12% Similarity=0.064 Sum_probs=75.1
Q ss_pred CCCEEEEEecCCCccChhhHHHHHHHhhccCCCCC---cc-eEEEecCceeeEEEEeCCCCChHH---HHHHHhh---hc
Q 003796 77 SPPRVIVLFGLSASVNLNSVREDLLRQLSSEGTGA---LS-STVSSSKYRLRTSVLQAPHGDLVG---CMEMAKV---AD 146 (795)
Q Consensus 77 ~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~~---g~-~tv~~~r~k~Ritfie~~~~dl~~---~LD~aKv---AD 146 (795)
.+|.+++|||+..+.....+ ...+....... +. .+..+.+.+-...|-.+| .|-.. |+|+++- -=
T Consensus 100 ~~~~V~aVIG~~~S~~s~av----a~v~~~~~IP~IS~~ats~~Ls~~~~~~~ffRt~p-~D~~qa~ai~~li~~~~w~~ 174 (403)
T cd06361 100 YVPRIKAVIGAGYSEISMAV----SRMLNLQLIPQVSYASTAEILSDKIRFPSFLRTVP-SDFYQTKAMAHLIKKSGWNW 174 (403)
T ss_pred CCCCeEEEECCCcchHHHHH----HHHhccCCcceEecCcCCcccCCcccCCCeeECCC-chHhHHHHHHHHHHHcCCcE
Confidence 45789999999876554333 33333333211 11 111122211134666677 55444 3333332 22
Q ss_pred eEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEE-eccCCcchh---hh-HHHHHHHHhhcccccCCCCeeE
Q 003796 147 LVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVL-IRDLPTDLK---KR-KDLKKMCISSLTSEFPEDCKFY 221 (795)
Q Consensus 147 lVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigV-l~~Ld~~~K---k~-~~~kK~lk~~f~~ef~~~~Klf 221 (795)
+.++..|..+| ......|...++.+|+.=+.-. +..-..+.. +. ..+.+.++. .+++++
T Consensus 175 Vaii~~~d~yG---------~~~~~~f~~~~~~~GicIa~~e~~~~~~~~~~~~~~~~~~~~~~ik~-------~~a~vV 238 (403)
T cd06361 175 VGIIITDDDYG---------RSALETFIIQAEANGVCIAFKEILPASLSDNTKLNRIIRTTEKIIEE-------NKVNVI 238 (403)
T ss_pred EEEEEecCchH---------HHHHHHHHHHHHHCCeEEEEEEEecCccCcchhHHHHHHHHHHHHhc-------CCCeEE
Confidence 34444444443 2234567788888896432211 211111000 11 112222222 368887
Q ss_pred EeC-CHHHHHHHHHHHhhccccCcccccCCCeEEEEeeE
Q 003796 222 AAD-TKDELHKFLWLFKEQRLTVPHWRNQRPFLMAQKVD 259 (795)
Q Consensus 222 ~l~-~~~E~~nL~R~Is~~k~r~l~WR~~rpYmLadr~e 259 (795)
.+- ...++..|+|..-.+.. ..+|+..+.+.
T Consensus 239 vv~~~~~~~~~l~~~a~~~g~-------~~~wigs~~w~ 270 (403)
T cd06361 239 VVFARQFHVFLLFNKAIERNI-------NKVWIASDNWS 270 (403)
T ss_pred EEEeChHHHHHHHHHHHHhCC-------CeEEEEECccc
Confidence 765 46677788777765543 35667666653
No 306
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=31.23 E-value=4.9e+02 Score=28.92 Aligned_cols=18 Identities=22% Similarity=0.381 Sum_probs=15.0
Q ss_pred CCCEEEEEecCCCccChh
Q 003796 77 SPPRVIVLFGLSASVNLN 94 (795)
Q Consensus 77 ~pP~iV~Vvg~~~~~~~~ 94 (795)
.+|.+|+++||++.+.+.
T Consensus 112 ~~~~vi~lvGpnGsGKTT 129 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTT 129 (318)
T ss_pred CCCeEEEEECCCCCcHHH
Confidence 468999999999977653
No 307
>PRK14495 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/unknown domain fusion protein; Provisional
Probab=30.85 E-value=1.3e+02 Score=35.21 Aligned_cols=68 Identities=19% Similarity=0.225 Sum_probs=40.3
Q ss_pred EEEEEecCCCccChhhHHHHHHHhhccCC------------CC-------C------cc-eEEEecCceeeEEEEeC-C-
Q 003796 80 RVIVLFGLSASVNLNSVREDLLRQLSSEG------------TG-------A------LS-STVSSSKYRLRTSVLQA-P- 131 (795)
Q Consensus 80 ~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~------------~~-------~------g~-~tv~~~r~k~Ritfie~-~- 131 (795)
+||+|+|.++++++ .|+..|+..++..+ .. . |- .+++++. .|+.++.- +
T Consensus 2 kVi~IvG~sgSGKT-TLiekLI~~L~~rG~rVavIKH~hH~fd~D~~GKDS~r~r~AGA~~V~v~s~--~r~al~~~~~~ 78 (452)
T PRK14495 2 RVYGIIGWKDAGKT-GLVERLVAAIAARGFSVSTVKHSHHDVDPDPPGSDSHRHRAAGAAEVVLAGP--RRLILTREHRG 78 (452)
T ss_pred cEEEEEecCCCCHH-HHHHHHHHHHHhCCCeEEEEeccCcccCCCCCCCCchhHHhCCCCEEEEEcC--CeEEEEEecCC
Confidence 48999999887775 56666677776432 11 0 33 3344443 46665532 1
Q ss_pred -CCChHHHHHHHhhhceEEE
Q 003796 132 -HGDLVGCMEMAKVADLVAF 150 (795)
Q Consensus 132 -~~dl~~~LD~aKvADlVll 150 (795)
..+|..+|+...=+|+||+
T Consensus 79 ~~~~L~~ll~~l~~~DlVLV 98 (452)
T PRK14495 79 EPPRLAAILERMAPVDLVLV 98 (452)
T ss_pred CCcCHHHHHhhcccCCEEEE
Confidence 1577888765444687664
No 308
>COG1866 PckA Phosphoenolpyruvate carboxykinase (ATP) [Energy production and conversion]
Probab=30.50 E-value=34 Score=39.56 Aligned_cols=95 Identities=14% Similarity=0.189 Sum_probs=53.7
Q ss_pred ccccceeeEEEEEEEecCCCcccCCCCCeEEEEeeeeeeeeeee-eccCCCCCCceEEecccCC-----CceEEEEEEee
Q 003796 591 LQHESKMSVLHFSVKKHDTYDAPIKAKEELIFHVGFRQFVARPI-FSSDNMNSDKHKMERFLHA-----GCFSVASIYAP 664 (795)
Q Consensus 591 l~~E~k~svv~~~ikrh~~~~~~lKSkdpLi~s~GwRRFq~~Pi-fS~~~~~~~r~k~~ky~~~-----~~~~~AtfygP 664 (795)
-.++..|+||++---+--|-..=+.|..-++|.+-=|---+.-. |.- ..+-.+..++-|+-+ -|||.|.+ ||
T Consensus 148 ~~~~~dftvin~p~f~~~~~~~g~~Se~~i~~n~~~~~~lIggT~YaG-EMKK~~fs~mnylLP~~~i~~MHcsANv-G~ 225 (529)
T COG1866 148 STFKPDFTVINAPSFKADPKRDGLRSETFVAFNFTERIVLIGGTWYAG-EMKKGIFSVMNYLLPLKGILSMHCSANV-GE 225 (529)
T ss_pred ccCCCCeEEEeCCcCCCChhhcccccccEEEEecccceeeeeccchhh-hhhhhHHHHhhccccccccccceecccc-Cc
Confidence 34556677777655555565566666666555432111111111 222 222346777888866 38998876 44
Q ss_pred cCCCCccEEEEEeCCCCCCCeEEEEeE-EeccCCcc
Q 003796 665 ICFPPLPLIVLKSADGGVAPAVAAVGS-LRSIDPDR 699 (795)
Q Consensus 665 i~~~~t~vl~f~~~~~~~~~ri~atG~-vl~~d~~r 699 (795)
. +-.+|+ |-|++||. .|++||.|
T Consensus 226 ~---gdvalF---------FGLSGTGKTTLSaDp~R 249 (529)
T COG1866 226 K---GDVALF---------FGLSGTGKTTLSADPHR 249 (529)
T ss_pred C---CCeEEE---------EeccCCCcceeccCCcc
Confidence 2 333333 45788885 57999998
No 309
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=29.79 E-value=3.7e+02 Score=26.02 Aligned_cols=67 Identities=13% Similarity=0.056 Sum_probs=38.7
Q ss_pred EEEecCCCccChhhHHHHHHHhh-ccC----CCCC-cc--eEEEecCceeeEEEEeCCCCChHHHHHHHhhhceEEEeee
Q 003796 82 IVLFGLSASVNLNSVREDLLRQL-SSE----GTGA-LS--STVSSSKYRLRTSVLQAPHGDLVGCMEMAKVADLVAFVAS 153 (795)
Q Consensus 82 V~Vvg~~~~~~~~sl~~~lvk~~-~~~----~~~~-g~--~tv~~~r~k~Ritfie~~~~dl~~~LD~aKvADlVll~id 153 (795)
|+|+|+++.+.. +| +..| ++. ..+. +. .++.......++.+....... .. ...+-||.+|+++|
T Consensus 3 i~vvG~~gvGKT-sl----i~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~~-~~--~~~~~~~~~ilv~d 74 (158)
T cd04103 3 LGIVGNLQSGKS-AL----VHRYLTGSYVQLESPEGGRFKKEVLVDGQSHLLLIRDEGGAP-DA--QFASWVDAVIFVFS 74 (158)
T ss_pred EEEECCCCCcHH-HH----HHHHHhCCCCCCCCCCccceEEEEEECCEEEEEEEEECCCCC-ch--hHHhcCCEEEEEEE
Confidence 789999998886 66 3332 221 1111 21 234444434567776664222 12 23577999999999
Q ss_pred CCC
Q 003796 154 ASS 156 (795)
Q Consensus 154 as~ 156 (795)
.+.
T Consensus 75 ~~~ 77 (158)
T cd04103 75 LEN 77 (158)
T ss_pred CCC
Confidence 884
No 310
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=29.24 E-value=1.1e+02 Score=34.59 Aligned_cols=43 Identities=16% Similarity=0.106 Sum_probs=31.9
Q ss_pred CCCCCEEEEEecCCCccChhhHHHHHHHhhccCCCCC-cceEEEe
Q 003796 75 IASPPRVIVLFGLSASVNLNSVREDLLRQLSSEGTGA-LSSTVSS 118 (795)
Q Consensus 75 ~~~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~~-g~~tv~~ 118 (795)
.....++++++||++++++ +|++.|.+.+..+..+. |++-...
T Consensus 74 ~~~~r~il~L~GPPGsGKS-tla~~La~~l~~ys~t~eG~~Y~~~ 117 (361)
T smart00763 74 LEERKQILYLLGPVGGGKS-SLVECLKRGLEEYSKTPEGRRYTFK 117 (361)
T ss_pred CCCCCcEEEEECCCCCCHH-HHHHHHHHHHhhhcccccCceEEEE
Confidence 3566799999999999886 77777788887765443 7765543
No 311
>PRK13768 GTPase; Provisional
Probab=29.08 E-value=2.1e+02 Score=30.48 Aligned_cols=64 Identities=19% Similarity=0.215 Sum_probs=36.3
Q ss_pred eEEEEeCCCCCh---------HHHHHHHhh--hceEEEeeeCCCccccccccccChHHHHHHHHHH--hcCCCceEEEec
Q 003796 124 RTSVLQAPHGDL---------VGCMEMAKV--ADLVAFVASASSFSEESMSYYIDSFGNQCLSVFR--SLGLPSTAVLIR 190 (795)
Q Consensus 124 Ritfie~~~~dl---------~~~LD~aKv--ADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~--aqG~P~vigVl~ 190 (795)
.+.++.+| .-+ ..+++.++- +|+|++|+|++.+. ...+.+...+|.++. ..|.|-++ |++
T Consensus 98 ~~~~~d~~-g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~-----~~~d~~~~~~l~~~~~~~~~~~~i~-v~n 170 (253)
T PRK13768 98 DYVLVDTP-GQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAK-----TPSDFVSLLLLALSVQLRLGLPQIP-VLN 170 (253)
T ss_pred CEEEEeCC-cHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhC-----CHHHHHHHHHHHHHHHHHcCCCEEE-EEE
Confidence 57777777 432 234455444 89999999997541 112233333333222 45776555 777
Q ss_pred cCCc
Q 003796 191 DLPT 194 (795)
Q Consensus 191 ~Ld~ 194 (795)
..|.
T Consensus 171 K~D~ 174 (253)
T PRK13768 171 KADL 174 (253)
T ss_pred hHhh
Confidence 7764
No 312
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=29.05 E-value=2.8e+02 Score=29.08 Aligned_cols=28 Identities=14% Similarity=0.032 Sum_probs=22.1
Q ss_pred hhhcccCCCCCCCCEEEEEecCCCccCh
Q 003796 66 LKEKRASSGIASPPRVIVLFGLSASVNL 93 (795)
Q Consensus 66 ~~~~R~~~~~~~pP~iV~Vvg~~~~~~~ 93 (795)
+..++.++|.=++..+|.|.|+|++++.
T Consensus 8 ~~LD~~l~GG~~~gs~~lI~G~pGsGKT 35 (237)
T TIGR03877 8 PGMDEILHGGIPERNVVLLSGGPGTGKS 35 (237)
T ss_pred HhHHHHhcCCCcCCeEEEEEcCCCCCHH
Confidence 4456666666788999999999998875
No 313
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=28.92 E-value=4.9e+02 Score=25.98 Aligned_cols=103 Identities=7% Similarity=-0.013 Sum_probs=53.8
Q ss_pred EEEEEecCCCccChhhHHHHHHHhhccCC------CCCcce---EEEecCceeeEEEEeCCCCC-hHHHHH-HHhhhceE
Q 003796 80 RVIVLFGLSASVNLNSVREDLLRQLSSEG------TGALSS---TVSSSKYRLRTSVLQAPHGD-LVGCME-MAKVADLV 148 (795)
Q Consensus 80 ~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~------~~~g~~---tv~~~r~k~Ritfie~~~~d-l~~~LD-~aKvADlV 148 (795)
+=|+|+|.++.+.. +| +..|.... .+.|.. .+..+...-++.++..+-.. ...+-. ..+-||.+
T Consensus 4 ~ki~~vG~~~vGKT-sl----i~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ 78 (191)
T cd01875 4 IKCVVVGDGAVGKT-CL----LICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVF 78 (191)
T ss_pred EEEEEECCCCCCHH-HH----HHHHHhCCCCcCCCCceEeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEE
Confidence 45899999998886 66 33332211 111221 12234345667778765222 333322 23569999
Q ss_pred EEeeeCCCccccccccccChHHHHHHHHHHh--cCCCceEEEeccCCc
Q 003796 149 AFVASASSFSEESMSYYIDSFGNQCLSVFRS--LGLPSTAVLIRDLPT 194 (795)
Q Consensus 149 ll~idas~g~~~~~~~~fe~eg~e~L~~l~a--qG~P~vigVl~~Ld~ 194 (795)
|+++|.+.- ..|+.--...+..++. .++|- +.|.+..|.
T Consensus 79 ilvydit~~------~Sf~~~~~~w~~~i~~~~~~~pi-ilvgNK~DL 119 (191)
T cd01875 79 IICFSIASP------SSYENVRHKWHPEVCHHCPNVPI-LLVGTKKDL 119 (191)
T ss_pred EEEEECCCH------HHHHHHHHHHHHHHHhhCCCCCE-EEEEeChhh
Confidence 999998742 2354332223333332 34443 446677664
No 314
>PLN03126 Elongation factor Tu; Provisional
Probab=28.64 E-value=8.5e+02 Score=28.73 Aligned_cols=126 Identities=13% Similarity=0.092 Sum_probs=73.7
Q ss_pred CCCCCCcEEEEEEecCchhHHhhhccccCCCcEEEEec-ccccceeeEEEEEEEecCC--CcccCCCCCeEEEEeeeeee
Q 003796 553 DSVPASLYVRLHIKEVPAGIAHRLCEMAERSPLIASGL-LQHESKMSVLHFSVKKHDT--YDAPIKAKEELIFHVGFRQF 629 (795)
Q Consensus 553 ~g~~~G~yVri~i~~vp~~~~~~~~~~~~~~Plil~gL-l~~E~k~svv~~~ikrh~~--~~~~lKSkdpLi~s~GwRRF 629 (795)
+.+.+|..|.|.|+++...-+. +=.||+.- .+...+.=..++.+-.|.. -..||+.....+++||--+-
T Consensus 346 ~~A~aG~~v~l~L~~i~~~di~--------rG~VL~~~~~~~~~~~F~A~i~vL~~~~gg~~~~I~~G~~~~lhigt~~~ 417 (478)
T PLN03126 346 DEALAGDNVGLLLRGIQKADIQ--------RGMVLAKPGSITPHTKFEAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDV 417 (478)
T ss_pred CEEeCCceeeeeccCCcHHHcC--------CccEEecCCCCCceEEEEEEEEEecccccCCcccccCCcEEEEEEEecEE
Confidence 4578999999999987653222 22333332 1111111122233333321 12589999999999997775
Q ss_pred eeeeeeccCCCCCCceEEecccCCCceEEEEEE--eecCCCCccEEEEEeCCCCCCCeEEEEeEEecc
Q 003796 630 VARPIFSSDNMNSDKHKMERFLHAGCFSVASIY--APICFPPLPLIVLKSADGGVAPAVAAVGSLRSI 695 (795)
Q Consensus 630 q~~PifS~~~~~~~r~k~~ky~~~~~~~~Atfy--gPi~~~~t~vl~f~~~~~~~~~ri~atG~vl~~ 695 (795)
...-..-. . ..+ .--+++.++..+++.|- .|++.-+.+-++++.. -+.+|-|.|+++
T Consensus 418 ~~~I~~i~-~-~~~--~~~~~l~~gd~a~v~l~~~~Pi~~~~~~RfilR~~-----~~Tva~G~V~~v 476 (478)
T PLN03126 418 TGKVTSIM-N-DKD--EESKMVMPGDRVKMVVELIVPVACEQGMRFAIREG-----GKTVGAGVIQSI 476 (478)
T ss_pred EEEEEEEe-c-ccC--CCccEeCCCCEEEEEEEECCeEEEccCCEEEEecC-----CceEEEEEEEEe
Confidence 54433222 1 111 11367888988887764 7887666666667654 267889988764
No 315
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=28.62 E-value=6.5e+02 Score=28.71 Aligned_cols=160 Identities=16% Similarity=0.168 Sum_probs=103.4
Q ss_pred ceeeEEEEeCCC-CC-hHHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc-chh
Q 003796 121 YRLRTSVLQAPH-GD-LVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT-DLK 197 (795)
Q Consensus 121 ~k~Ritfie~~~-~d-l~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~-~~K 197 (795)
-+|.+.-+.||- .| +-.||--|---|-.|||+.|..| -=..|.|=|=+.+.-|++.++..++..|. +.-
T Consensus 115 a~RhYaH~DCPGHADYIKNMItGaaqMDGaILVVaatDG--------~MPQTrEHlLLArQVGV~~ivvfiNKvD~V~d~ 186 (449)
T KOG0460|consen 115 AKRHYAHTDCPGHADYIKNMITGAAQMDGAILVVAATDG--------PMPQTREHLLLARQVGVKHIVVFINKVDLVDDP 186 (449)
T ss_pred cccccccCCCCchHHHHHHhhcCccccCceEEEEEcCCC--------CCcchHHHHHHHHHcCCceEEEEEecccccCCH
Confidence 368899999984 23 77899888889999999999977 22368888888888899999999988775 111
Q ss_pred hhHH-----HHHHHHhhcccccC-------CCCeeEEeCC------HHHHHHHHHHHhhccccCcccccCCCeEEEEeeE
Q 003796 198 KRKD-----LKKMCISSLTSEFP-------EDCKFYAADT------KDELHKFLWLFKEQRLTVPHWRNQRPFLMAQKVD 259 (795)
Q Consensus 198 k~~~-----~kK~lk~~f~~ef~-------~~~Klf~l~~------~~E~~nL~R~Is~~k~r~l~WR~~rpYmLadr~e 259 (795)
...+ .+..|.. | .|+ .|.-|..|.+ ..-|..|+-.+-+--|-|-+ ..+-|+||+=.--
T Consensus 187 e~leLVEmE~RElLse-~--gf~Gd~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsyip~P~R-~~~~pFl~pie~v 262 (449)
T KOG0460|consen 187 EMLELVEMEIRELLSE-F--GFDGDNTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYIPTPER-DLDKPFLLPIEDV 262 (449)
T ss_pred HHHHHHHHHHHHHHHH-c--CCCCCCCCeeecchhhhhcCCCccccHHHHHHHHHHHhccCCCccc-ccCCCceeehhhe
Confidence 2222 2332221 1 122 1344445553 34466676666554444443 3456888764433
Q ss_pred eccCCCCCCCceEEEEEEEeCCCCCCCCeEEeCCCCce
Q 003796 260 VVADDCNSGKCTLLLHGYLRAHCLSVNQLVHISGAGDF 297 (795)
Q Consensus 260 ~~~~~~~~~~~~l~v~GyvRG~~l~~n~lVHIpG~GDf 297 (795)
|.-+ .+-.+|+|-|--.-|+.|.-|-|-|++--
T Consensus 263 fsI~-----GRGTVvtGrlERG~lKkG~e~eivG~~~~ 295 (449)
T KOG0460|consen 263 FSIP-----GRGTVVTGRLERGVLKKGDEVEIVGHNKT 295 (449)
T ss_pred eeec-----CCceEEEEEEeecccccCCEEEEeccCcc
Confidence 3211 34566778775555999999999998843
No 316
>PRK13796 GTPase YqeH; Provisional
Probab=28.62 E-value=2e+02 Score=32.56 Aligned_cols=94 Identities=11% Similarity=0.021 Sum_probs=53.2
Q ss_pred CChHHHHHHHhhhc-eEEEeeeCCCccccccccccCh-HHHHHHHHHHhcCCCceEEEeccCCcchh--hhHHHHHHHHh
Q 003796 133 GDLVGCMEMAKVAD-LVAFVASASSFSEESMSYYIDS-FGNQCLSVFRSLGLPSTAVLIRDLPTDLK--KRKDLKKMCIS 208 (795)
Q Consensus 133 ~dl~~~LD~aKvAD-lVll~idas~g~~~~~~~~fe~-eg~e~L~~l~aqG~P~vigVl~~Ld~~~K--k~~~~kK~lk~ 208 (795)
.|+..+|..++-+| +|++|+|+.. |.. +-.++.+.+ .+.| ++.|++..|...+ .+.++++.++.
T Consensus 57 ~~~~~~l~~i~~~~~lIv~VVD~~D---------~~~s~~~~L~~~~--~~kp-viLViNK~DLl~~~~~~~~i~~~l~~ 124 (365)
T PRK13796 57 DDFLKLLNGIGDSDALVVNVVDIFD---------FNGSWIPGLHRFV--GNNP-VLLVGNKADLLPKSVKKNKVKNWLRQ 124 (365)
T ss_pred HHHHHHHHhhcccCcEEEEEEECcc---------CCCchhHHHHHHh--CCCC-EEEEEEchhhCCCccCHHHHHHHHHH
Confidence 67888898888777 9999999863 332 223333322 1444 6678887774112 22345555555
Q ss_pred hcccccCCCCeeEEeCC--HHHHHHHHHHHhh
Q 003796 209 SLTSEFPEDCKFYAADT--KDELHKFLWLFKE 238 (795)
Q Consensus 209 ~f~~ef~~~~Klf~l~~--~~E~~nL~R~Is~ 238 (795)
+....=.....+|.+|. ...+..|...|..
T Consensus 125 ~~k~~g~~~~~v~~vSAk~g~gI~eL~~~I~~ 156 (365)
T PRK13796 125 EAKELGLRPVDVVLISAQKGHGIDELLEAIEK 156 (365)
T ss_pred HHHhcCCCcCcEEEEECCCCCCHHHHHHHHHH
Confidence 44422111236777774 3345666666643
No 317
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=28.34 E-value=4e+02 Score=27.25 Aligned_cols=69 Identities=7% Similarity=0.064 Sum_probs=39.9
Q ss_pred EecCceeeEEEEeCCC-CChHHHH-HHHhhhceEEEeeeCCCccccccccccC---hHHHHHHHHHHhcCCCceEEEecc
Q 003796 117 SSSKYRLRTSVLQAPH-GDLVGCM-EMAKVADLVAFVASASSFSEESMSYYID---SFGNQCLSVFRSLGLPSTAVLIRD 191 (795)
Q Consensus 117 ~~~r~k~Ritfie~~~-~dl~~~L-D~aKvADlVll~idas~g~~~~~~~~fe---~eg~e~L~~l~aqG~P~vigVl~~ 191 (795)
...+.+.++.|+.++- ..+..|- ...+-||.+|+|+|.+.. ..|+ .|-.++...+ .++| ++.|.+.
T Consensus 38 ~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~------~S~~~i~~w~~~i~~~~--~~~p-iilvgNK 108 (200)
T smart00176 38 HTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR------VTYKNVPNWHRDLVRVC--ENIP-IVLCGNK 108 (200)
T ss_pred EECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh------HHHHHHHHHHHHHHHhC--CCCC-EEEEEEC
Confidence 3344467888888762 2233333 356789999999999854 2243 2333333321 2444 5566777
Q ss_pred CCc
Q 003796 192 LPT 194 (795)
Q Consensus 192 Ld~ 194 (795)
.|.
T Consensus 109 ~Dl 111 (200)
T smart00176 109 VDV 111 (200)
T ss_pred ccc
Confidence 775
No 318
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=28.28 E-value=4.2e+02 Score=30.93 Aligned_cols=29 Identities=28% Similarity=0.419 Sum_probs=19.7
Q ss_pred CCCEEEEEecCCCccChhhHHHHHHHhhcc
Q 003796 77 SPPRVIVLFGLSASVNLNSVREDLLRQLSS 106 (795)
Q Consensus 77 ~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~ 106 (795)
.+|.+|+++|+++++.+..+ ..|...|.+
T Consensus 93 ~~p~vI~lvG~~GsGKTTta-akLA~~L~~ 121 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTA-AKLARYFKK 121 (437)
T ss_pred CCCeEEEEECCCCCcHHHHH-HHHHHHHHH
Confidence 46999999999998876433 233445543
No 319
>cd06364 PBP1_CaSR Ligand-binding domain of the CaSR calcium-sensing receptor, which is a member of the family C receptors within the G-protein coupled receptor superfamily. Ligand-binding domain of the CaSR calcium-sensing receptor, which is a member of the family C receptors within the G-protein coupled receptor superfamily. CaSR provides feedback control of extracellular calcium homeostasis by responding sensitively to acute fluctuations in extracellular ionized Ca2+ concentration. This ligand-binding domain has homology to the bacterial leucine-isoleucine-valine binding protein (LIVBP) and a leucine binding protein (LBP). CaSR is widely expressed in mammalian tissues and is active in tissues that are not directly involved in extracellular calcium homeostasis. Moreover, CaSR responds to aromatic, aliphatic, and polar amino acids, but not to positively charged or branched chain amino acids, which suggests that changes in plasma amino acid levels are likely to modulate whole body calci
Probab=28.05 E-value=8.9e+02 Score=28.54 Aligned_cols=148 Identities=13% Similarity=0.103 Sum_probs=71.7
Q ss_pred CCCEEEEEecCCCccChhhHHHHHHHhhccCCCCC---c-ceEEEecCceeeEEEEeCCCCC---hHHHHHHHhh--hce
Q 003796 77 SPPRVIVLFGLSASVNLNSVREDLLRQLSSEGTGA---L-SSTVSSSKYRLRTSVLQAPHGD---LVGCMEMAKV--ADL 147 (795)
Q Consensus 77 ~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~~---g-~~tv~~~r~k~Ritfie~~~~d---l~~~LD~aKv--ADl 147 (795)
..|.+++|||+..+.....+ ...+...+... + ..+..+.+.+-...|-.+| .| ..+|+|+++- ..-
T Consensus 115 ~~~~v~aVIG~~sS~~s~av----a~~~~~~~IP~IS~~sss~~ls~~~~yp~ffRt~p-sd~~q~~Ai~~l~~~f~wk~ 189 (510)
T cd06364 115 HIPSTIAVVGATGSGVSTAV----ANLLGLFYIPQVSYASSSRLLSNKNQFKSFLRTIP-NDEHQATAMADIIEYFRWNW 189 (510)
T ss_pred CCCceEEEECCCchhHHHHH----HHHhccccccccccccCCcccCCccccCCeeEcCC-ChHHHHHHHHHHHHHcCCeE
Confidence 44568999999876554443 33333333221 1 1122233211122455555 55 3456666653 233
Q ss_pred EEEe-eeCCCccccccccccChHHHHHHHHHHhcCCCceEEE-eccCCcchhhhHHHHHHHHhhcccccCCCCeeEEeC-
Q 003796 148 VAFV-ASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVL-IRDLPTDLKKRKDLKKMCISSLTSEFPEDCKFYAAD- 224 (795)
Q Consensus 148 Vll~-idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigV-l~~Ld~~~Kk~~~~kK~lk~~f~~ef~~~~Klf~l~- 224 (795)
|-++ .|..+| ..-...|...++..|+.-+... +..... ..+....|++ +.. ..++++.+.
T Consensus 190 VaiI~~dd~yG---------~~~~~~~~~~~~~~Gi~I~~~~~i~~~~~----~~d~~~~l~k-lk~---~~a~vVvl~~ 252 (510)
T cd06364 190 VGTIAADDDYG---------RPGIEKFREEAEERDICIDFSELISQYSD----EEEIQRVVEV-IQN---STAKVIVVFS 252 (510)
T ss_pred EEEEEecCcch---------HHHHHHHHHHHHHCCcEEEEEEEeCCCCC----HHHHHHHHHH-HHh---cCCeEEEEEe
Confidence 4444 455543 1223556677788886533221 222111 1122222221 111 367776664
Q ss_pred CHHHHHHHHHHHhhccccCccc
Q 003796 225 TKDELHKFLWLFKEQRLTVPHW 246 (795)
Q Consensus 225 ~~~E~~nL~R~Is~~k~r~l~W 246 (795)
...++..++|.+..+...+..|
T Consensus 253 ~~~~~~~ll~qa~~~g~~~~iw 274 (510)
T cd06364 253 SGPDLEPLIKEIVRRNITGKIW 274 (510)
T ss_pred CcHHHHHHHHHHHHhCCCCcEE
Confidence 4677888888877665544444
No 320
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=27.92 E-value=3e+02 Score=29.40 Aligned_cols=33 Identities=21% Similarity=0.137 Sum_probs=23.5
Q ss_pred cccCCCCCCCCEEEEEecCCCccChhhHHHHHHH
Q 003796 69 KRASSGIASPPRVIVLFGLSASVNLNSVREDLLR 102 (795)
Q Consensus 69 ~R~~~~~~~pP~iV~Vvg~~~~~~~~sl~~~lvk 102 (795)
+|.++|.-++..++.|.|+|++++. .++.+++.
T Consensus 26 ~~~~~GGip~gs~~lI~G~pGtGKT-~l~~qf~~ 58 (259)
T TIGR03878 26 VRKPLGGIPAYSVINITGVSDTGKS-LMVEQFAV 58 (259)
T ss_pred ccccCCCeECCcEEEEEcCCCCCHH-HHHHHHHH
Confidence 4456666788999999999998886 45433333
No 321
>KOG0400 consensus 40S ribosomal protein S13 [Translation, ribosomal structure and biogenesis]
Probab=27.79 E-value=1e+02 Score=29.82 Aligned_cols=73 Identities=23% Similarity=0.428 Sum_probs=52.3
Q ss_pred HHHHHHHHHHhcCCCceEEE-eccCCcchhhhHHHHHHHHhhcccccCCCCeeEEeCCHHHHHHHHHHHhhccccCcccc
Q 003796 169 FGNQCLSVFRSLGLPSTAVL-IRDLPTDLKKRKDLKKMCISSLTSEFPEDCKFYAADTKDELHKFLWLFKEQRLTVPHWR 247 (795)
Q Consensus 169 eg~e~L~~l~aqG~P~vigV-l~~Ld~~~Kk~~~~kK~lk~~f~~ef~~~~Klf~l~~~~E~~nL~R~Is~~k~r~l~WR 247 (795)
.|..++++|+++|+-.-|.= |.|| .||...++|.|-+.=.. .++|+--+--++-|+.|+|+--....-|..|.
T Consensus 67 ~G~kI~Rilk~~Gl~PeiPeDLy~l---ikkAv~iRkHLer~RKD---~d~K~RLILveSRihRlARYYk~~~~lPp~WK 140 (151)
T KOG0400|consen 67 TGNKILRILKSNGLAPEIPEDLYHL---IKKAVAIRKHLERNRKD---KDAKFRLILVESRIHRLARYYKTKMVLPPNWK 140 (151)
T ss_pred chhHHHHHHHHcCCCCCCcHHHHHH---HHHHHHHHHHHHHhccc---cccceEEEeehHHHHHHHHHHHhcccCCCCCC
Confidence 58999999999998543321 3332 36666677777654433 25666555568889999999999999999995
No 322
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=27.46 E-value=85 Score=36.45 Aligned_cols=44 Identities=20% Similarity=0.215 Sum_probs=37.0
Q ss_pred HhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc
Q 003796 142 AKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT 194 (795)
Q Consensus 142 aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~ 194 (795)
.-.+|-.|.||||.-| +|..|..++..|+..|+| ++..++.||-
T Consensus 102 LtAvDsAvMVIDaAKG--------iE~qT~KLfeVcrlR~iP-I~TFiNKlDR 145 (528)
T COG4108 102 LTAVDSAVMVIDAAKG--------IEPQTLKLFEVCRLRDIP-IFTFINKLDR 145 (528)
T ss_pred HHhhheeeEEEecccC--------ccHHHHHHHHHHhhcCCc-eEEEeecccc
Confidence 3457889999999965 999999999999999999 5556777774
No 323
>PRK15367 type III secretion system protein SsaD; Provisional
Probab=26.63 E-value=2e+02 Score=32.95 Aligned_cols=118 Identities=13% Similarity=0.135 Sum_probs=68.4
Q ss_pred cChHHHHHHHHHHhcCCCceEEE--------ec-cCCcchhhhHHHHHHHHhhcccccCCCCeeEEeC--CHHHHHHHHH
Q 003796 166 IDSFGNQCLSVFRSLGLPSTAVL--------IR-DLPTDLKKRKDLKKMCISSLTSEFPEDCKFYAAD--TKDELHKFLW 234 (795)
Q Consensus 166 fe~eg~e~L~~l~aqG~P~vigV--------l~-~Ld~~~Kk~~~~kK~lk~~f~~ef~~~~Klf~l~--~~~E~~nL~R 234 (795)
.+-....++++|+.+|+..-+.| ++ +|+. -++. .-..+...|..+|| +-+|.|-. ...+..+++|
T Consensus 262 ~~g~~~~li~~L~~~gLl~~Lsv~~~~~~i~iSG~L~~--~q~~-~~~~l~~~~~~~~p-~L~l~~qni~~~~~~~~~lp 337 (395)
T PRK15367 262 HQSQGDDIISAIIENGLVGLVNVTPMRRSFVISGVLDE--SHQR-ILQETLAALKKKDP-ALSLIYQDIAPSHDESKYLP 337 (395)
T ss_pred cchhHHHHHHHHHHCCCcccceEEEcCCeEEEEEecCH--HHHH-HHHHHHHHHHhhCC-CceEEEcCCCCCcchhhcCc
Confidence 44567899999999999988887 33 4665 2223 34455566788887 48888765 3555566666
Q ss_pred HHhhccccCcccccCCCeEEEEe-eEeccCCCCCCCceEEEEEEEeCCCCC-CCCeEEeC
Q 003796 235 LFKEQRLTVPHWRNQRPFLMAQK-VDVVADDCNSGKCTLLLHGYLRAHCLS-VNQLVHIS 292 (795)
Q Consensus 235 ~Is~~k~r~l~WR~~rpYmLadr-~e~~~~~~~~~~~~l~v~GyvRG~~l~-~n~lVHIp 292 (795)
..+...-- -.+.||++-++ .-+-... .-++|--++.=--.|..|+ .|.+||||
T Consensus 338 a~i~g~gG----n~~~pyV~L~Ng~RL~~Gs-~L~nGyrV~~I~~~gI~L~~~~~LI~iP 392 (395)
T PRK15367 338 APVAGFVQ----SRHGNYLLLTNKERLRVGA-LLPNGGEIVHLSADVVTIKHYDTLINYP 392 (395)
T ss_pred cceEEeec----CCCCCeEEeeCCcCccCCC-CCCCceEEEEEcCCceEEecCCcEEEec
Confidence 54433322 24578875443 3331111 1123322221113454453 89999999
No 324
>cd03708 GTPBP_III Domain III of the GP-1 family of GTPase. This group includes proteins similar to GTPBP1 and GTPBP2. GTPB1 is structurally, related to elongation factor 1 alpha, a key component of protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution.
Probab=26.25 E-value=2.9e+02 Score=23.93 Aligned_cols=68 Identities=15% Similarity=0.239 Sum_probs=43.8
Q ss_pred cccCCCCCeEEEEeeeeeeeeeeeeccCCCCCCceEEecccCCCceEEEEEE---eecCCCCccEEEEEeCCCCCCCeEE
Q 003796 611 DAPIKAKEELIFHVGFRQFVARPIFSSDNMNSDKHKMERFLHAGCFSVASIY---APICFPPLPLIVLKSADGGVAPAVA 687 (795)
Q Consensus 611 ~~~lKSkdpLi~s~GwRRFq~~PifS~~~~~~~r~k~~ky~~~~~~~~Atfy---gPi~~~~t~vl~f~~~~~~~~~ri~ 687 (795)
+.||.+.-..++++|-.+-.+.-. .... +++.++..+.+.+. -|+..-+.+-++++ .+ +.+
T Consensus 16 ~~~i~~Gy~~~l~~~t~~~~~~i~----~i~~------~~l~~g~~~~v~i~f~~~p~~~e~~grf~lr-----~g-~tv 79 (87)
T cd03708 16 PTTISPGYQATVHIGSIRQTARIV----SIDK------DVLRTGDRALVRFRFLYHPEYLREGQRLIFR-----EG-RTK 79 (87)
T ss_pred CCcccCCCEeEEEEcCCEEEEEEE----eccH------hhccCCCeEEEEEEECCCCcEEccCCeEEEE-----CC-CcE
Confidence 588999998888888776443211 1111 67888888887776 56642333444442 23 689
Q ss_pred EEeEEec
Q 003796 688 AVGSLRS 694 (795)
Q Consensus 688 atG~vl~ 694 (795)
|.|.|++
T Consensus 80 a~G~I~~ 86 (87)
T cd03708 80 GVGEVTK 86 (87)
T ss_pred EEEEEEE
Confidence 9999865
No 325
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=25.85 E-value=1e+03 Score=27.21 Aligned_cols=114 Identities=14% Similarity=0.095 Sum_probs=66.1
Q ss_pred CCCCCCcEEEEEEe---cCchhHHhhhccccCCCcEEEEec--ccccceeeEEEEEEEec-CC-----CcccCCCCCeEE
Q 003796 553 DSVPASLYVRLHIK---EVPAGIAHRLCEMAERSPLIASGL--LQHESKMSVLHFSVKKH-DT-----YDAPIKAKEELI 621 (795)
Q Consensus 553 ~g~~~G~yVri~i~---~vp~~~~~~~~~~~~~~Plil~gL--l~~E~k~svv~~~ikrh-~~-----~~~~lKSkdpLi 621 (795)
+.+.||..|.|.|+ ++...-+. +=-||+.- .+.-..-=.+++.+-.| .| ++.+|+..-+++
T Consensus 285 ~~a~~G~~v~i~l~~~~~i~~~~i~--------~G~vl~~~~~~~~~~~~f~a~v~~l~~~~~~~~~~~~~~i~~g~~~~ 356 (411)
T PRK04000 285 EEARPGGLVGVGTKLDPSLTKADAL--------AGSVAGKPGTLPPVWESLTIEVHLLERVVGTKEELKVEPIKTGEPLM 356 (411)
T ss_pred CEEcCCCEEEEEeccCCCCCHHHcc--------CccEEEcCCCCCCceEEEEEEEEEEEhhcCccccccCCCCCCCCEEE
Confidence 45789999999985 44322111 11222221 11111111233333333 23 357999999999
Q ss_pred EEeeeeeeeeeeeeccCCCCCCceEEecccCCCceEEEEEEeecCC-CCccEEEEEeCCCCCCCeEEEEeEE
Q 003796 622 FHVGFRQFVARPIFSSDNMNSDKHKMERFLHAGCFSVASIYAPICF-PPLPLIVLKSADGGVAPAVAAVGSL 692 (795)
Q Consensus 622 ~s~GwRRFq~~PifS~~~~~~~r~k~~ky~~~~~~~~AtfygPi~~-~~t~vl~f~~~~~~~~~ri~atG~v 692 (795)
+++|-.+-.+.-..-. + ..|-..++-|+.. ++..+++-+..+ +.+|++++|.+
T Consensus 357 l~~~t~~~~~~i~~i~----~------------~~~~~~l~~p~~~~~g~r~~~~~~~~--~~~~~~~~~~~ 410 (411)
T PRK04000 357 LNVGTATTVGVVTSAR----K------------DEAEVKLKRPVCAEEGDRVAISRRVG--GRWRLIGYGII 410 (411)
T ss_pred EEEeccEEEEEEEEcC----C------------cEEEEEECCcEecCCCCEEEEEEecC--CcEEEEEEEEe
Confidence 9999877655544321 1 2455667888664 456777766543 57999999976
No 326
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=25.57 E-value=7.4e+02 Score=30.85 Aligned_cols=108 Identities=14% Similarity=0.144 Sum_probs=54.1
Q ss_pred CEEEEEecCCCccChhhHHHHHHHh--hccCCCCCcc---eEEEecCceeeEEEEeCCC-CCh-------HHHHHHH---
Q 003796 79 PRVIVLFGLSASVNLNSVREDLLRQ--LSSEGTGALS---STVSSSKYRLRTSVLQAPH-GDL-------VGCMEMA--- 142 (795)
Q Consensus 79 P~iV~Vvg~~~~~~~~sl~~~lvk~--~~~~~~~~g~---~tv~~~r~k~Ritfie~~~-~dl-------~~~LD~a--- 142 (795)
+.-|+|+|.++.+.. ++++.|+.. +.......+. ..+......+.+.||..|- .+- ..++..+
T Consensus 118 slrIvLVGKTGVGKS-SLINSILGekvf~vss~~~~TTr~~ei~~~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~ 196 (763)
T TIGR00993 118 SLNILVLGKSGVGKS-ATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQGVKIRVIDTPGLKSSASDQSKNEKILSSVKKF 196 (763)
T ss_pred ceEEEEECCCCCCHH-HHHHHHhccccccccCCCCCceEEEEEEEEECCceEEEEECCCCCccccchHHHHHHHHHHHHH
Confidence 456999999998775 664444532 1111111111 1111111125688888763 110 1233322
Q ss_pred -hh--hceEEEeeeCCCccccccccccChHHHHHHHHH---HhcC-CCceEEEeccCCc
Q 003796 143 -KV--ADLVAFVASASSFSEESMSYYIDSFGNQCLSVF---RSLG-LPSTAVLIRDLPT 194 (795)
Q Consensus 143 -Kv--ADlVll~idas~g~~~~~~~~fe~eg~e~L~~l---~aqG-~P~vigVl~~Ld~ 194 (795)
+- +|+||+|++... ...|++-...|+.| ...+ +..+|.|+||-+.
T Consensus 197 Lsk~gpDVVLlV~RLd~-------~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~ 248 (763)
T TIGR00993 197 IKKNPPDIVLYVDRLDM-------QTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAAS 248 (763)
T ss_pred HhcCCCCEEEEEEeCCC-------ccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCcc
Confidence 21 689999987542 11333333444444 4444 3577888998653
No 327
>PRK00285 ihfA integration host factor subunit alpha; Reviewed
Probab=25.10 E-value=36 Score=30.92 Aligned_cols=21 Identities=38% Similarity=0.575 Sum_probs=18.1
Q ss_pred CCCCCCeEEeCCCCceeecee
Q 003796 282 CLSVNQLVHISGAGDFQLGKI 302 (795)
Q Consensus 282 ~l~~n~lVHIpG~GDfqi~~I 302 (795)
.|..|..|||+|+|-|.+..-
T Consensus 37 ~L~~g~~V~l~gfG~F~~~~~ 57 (99)
T PRK00285 37 ALENGEQVKLSGFGNFQLRDK 57 (99)
T ss_pred HHHcCCeEEEcCCEEEEEEEE
Confidence 467788999999999999864
No 328
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=24.75 E-value=8.8e+02 Score=27.71 Aligned_cols=64 Identities=17% Similarity=0.164 Sum_probs=45.5
Q ss_pred cccCCCCCeEEEEeeeeeeeeeeeeccCCCCCCceEEecccCCCceEEEEEEeecCC-CCccEEEEEeCCCCCCCeEEEE
Q 003796 611 DAPIKAKEELIFHVGFRQFVARPIFSSDNMNSDKHKMERFLHAGCFSVASIYAPICF-PPLPLIVLKSADGGVAPAVAAV 689 (795)
Q Consensus 611 ~~~lKSkdpLi~s~GwRRFq~~PifS~~~~~~~r~k~~ky~~~~~~~~AtfygPi~~-~~t~vl~f~~~~~~~~~ri~at 689 (795)
+.||+....+++++|=.+-.+.-..-. + ..+-..+.-|++. ++..+++.+..+ ..+|++++
T Consensus 341 ~~~i~~g~~~~l~~gt~~~~~~v~~~~----~------------~~~~l~l~~p~~~~~g~r~~~~~~~~--~~~~~~g~ 402 (406)
T TIGR03680 341 VEPIKTGEVLMLNVGTATTVGVVTSAR----K------------DEIEVKLKRPVCAEEGDRVAISRRVG--GRWRLIGY 402 (406)
T ss_pred cccCCCCCEEEEEEccceEEEEEEEcC----C------------cEEEEEECCcEEcCCCCEEEEEEecC--CceEEEEE
Confidence 479999999999999777655544322 1 1244556777654 457788877664 58999999
Q ss_pred eEE
Q 003796 690 GSL 692 (795)
Q Consensus 690 G~v 692 (795)
|.+
T Consensus 403 g~~ 405 (406)
T TIGR03680 403 GII 405 (406)
T ss_pred EEe
Confidence 986
No 329
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=24.50 E-value=98 Score=34.82 Aligned_cols=142 Identities=14% Similarity=0.070 Sum_probs=77.3
Q ss_pred EEEEEecCCCccChhhHHHHHHHhhccCCCC-CcceEE-------EecCceeeEEEEeCCCCChHHHHHHHhhhceEEEe
Q 003796 80 RVIVLFGLSASVNLNSVREDLLRQLSSEGTG-ALSSTV-------SSSKYRLRTSVLQAPHGDLVGCMEMAKVADLVAFV 151 (795)
Q Consensus 80 ~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~-~g~~tv-------~~~r~k~Ritfie~~~~dl~~~LD~aKvADlVll~ 151 (795)
-+++++||++++++ .+ ++.+...... .|-|.+ .-+ .+|++-++--++ -|+.- ..|.|=+.|-
T Consensus 30 ef~vllGPSGcGKS-Tl----Lr~IAGLe~~~~G~I~i~g~~vt~l~P-~~R~iamVFQ~y-ALyPh---mtV~~Niaf~ 99 (338)
T COG3839 30 EFVVLLGPSGCGKS-TL----LRMIAGLEEPTSGEILIDGRDVTDLPP-EKRGIAMVFQNY-ALYPH---MTVYENIAFG 99 (338)
T ss_pred CEEEEECCCCCCHH-HH----HHHHhCCCCCCCceEEECCEECCCCCh-hHCCEEEEeCCc-cccCC---CcHHHHhhhh
Confidence 36899999999886 55 6777665443 344443 223 467777775542 12211 1233333333
Q ss_pred eeCCCccccccccccChHHHHHHHHHHhcCC-------------------------CceEEE---eccCCcchhhhHHHH
Q 003796 152 ASASSFSEESMSYYIDSFGNQCLSVFRSLGL-------------------------PSTAVL---IRDLPTDLKKRKDLK 203 (795)
Q Consensus 152 idas~g~~~~~~~~fe~eg~e~L~~l~aqG~-------------------------P~vigV---l~~Ld~~~Kk~~~~k 203 (795)
+.-.- . ...+.+..-.+.+.+|...++ |+++-. |.+||. |-|...+
T Consensus 100 Lk~~~-~---~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa--~lR~~mr 173 (338)
T COG3839 100 LKLRG-V---PKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDA--KLRVLMR 173 (338)
T ss_pred hhhCC-C---chHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecCchhHhhH--HHHHHHH
Confidence 32210 0 001233444444444443332 565555 677776 5555566
Q ss_pred HHHHhhcccccCCCCeeEEeC-CHHHHHHHHHHHhhcc
Q 003796 204 KMCISSLTSEFPEDCKFYAAD-TKDELHKFLWLFKEQR 240 (795)
Q Consensus 204 K~lk~~f~~ef~~~~Klf~l~-~~~E~~nL~R~Is~~k 240 (795)
..+++ ++.++. .-+.|+. ...|+..|+-.|++|.
T Consensus 174 ~ei~~-lh~~l~--~T~IYVTHDq~EAmtladri~Vm~ 208 (338)
T COG3839 174 SEIKK-LHERLG--TTTIYVTHDQVEAMTLADRIVVMN 208 (338)
T ss_pred HHHHH-HHHhcC--CcEEEEcCCHHHHHhhCCEEEEEe
Confidence 66655 555554 4445554 6888999988888887
No 330
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=24.34 E-value=2.2e+02 Score=32.14 Aligned_cols=93 Identities=10% Similarity=0.076 Sum_probs=51.8
Q ss_pred CChHHHHHHH-hhhceEEEeeeCCCccccccccccC-hHHHHHHHHHHhcCCCceEEEeccCCcchh--hhHHHHHHHHh
Q 003796 133 GDLVGCMEMA-KVADLVAFVASASSFSEESMSYYID-SFGNQCLSVFRSLGLPSTAVLIRDLPTDLK--KRKDLKKMCIS 208 (795)
Q Consensus 133 ~dl~~~LD~a-KvADlVll~idas~g~~~~~~~~fe-~eg~e~L~~l~aqG~P~vigVl~~Ld~~~K--k~~~~kK~lk~ 208 (795)
.++..++... +-||+||+|+|+.. |+ .+-.++.+.+. +. .++.|++..|.-.+ ...+.++.++.
T Consensus 51 e~f~~~l~~~~~~~~~Il~VvD~~d---------~~~s~~~~l~~~~~--~~-piilV~NK~DLl~k~~~~~~~~~~l~~ 118 (360)
T TIGR03597 51 DDFLNLLNSLGDSNALIVYVVDIFD---------FEGSLIPELKRFVG--GN-PVLLVGNKIDLLPKSVNLSKIKEWMKK 118 (360)
T ss_pred HHHHHHHhhcccCCcEEEEEEECcC---------CCCCccHHHHHHhC--CC-CEEEEEEchhhCCCCCCHHHHHHHHHH
Confidence 4677777766 57899999999863 22 23344444432 33 56778888774112 23345555555
Q ss_pred hcccccCCCCeeEEeCC--HHHHHHHHHHHh
Q 003796 209 SLTSEFPEDCKFYAADT--KDELHKFLWLFK 237 (795)
Q Consensus 209 ~f~~ef~~~~Klf~l~~--~~E~~nL~R~Is 237 (795)
++...=..-.++|.+|. ...+..|.+.|.
T Consensus 119 ~~k~~g~~~~~i~~vSAk~g~gv~eL~~~l~ 149 (360)
T TIGR03597 119 RAKELGLKPVDIILVSAKKGNGIDELLDKIK 149 (360)
T ss_pred HHHHcCCCcCcEEEecCCCCCCHHHHHHHHH
Confidence 55432111235777774 233555555554
No 331
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=24.34 E-value=5.7e+02 Score=25.40 Aligned_cols=102 Identities=13% Similarity=0.031 Sum_probs=54.2
Q ss_pred EEEecCCCccChhhHHHHHHHhhc-cCCC-----CCcc---eEEEecCceeeEEEEeCCC-CChHHHHH-HHhhhceEEE
Q 003796 82 IVLFGLSASVNLNSVREDLLRQLS-SEGT-----GALS---STVSSSKYRLRTSVLQAPH-GDLVGCME-MAKVADLVAF 150 (795)
Q Consensus 82 V~Vvg~~~~~~~~sl~~~lvk~~~-~~~~-----~~g~---~tv~~~r~k~Ritfie~~~-~dl~~~LD-~aKvADlVll 150 (795)
|+|+|.++.+.. +| +..|. +.-. +.|. ..+..+..+-+++++..+. ....++.. ..+=||.+||
T Consensus 4 ivv~G~~~vGKT-sl----i~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~il 78 (176)
T cd04133 4 CVTVGDGAVGKT-CM----LICYTSNKFPTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 78 (176)
T ss_pred EEEECCCCCcHH-HH----HHHHhcCCCCCCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEE
Confidence 789999998876 67 44443 2111 1121 1122333456777776642 22323222 4678999999
Q ss_pred eeeCCCccccccccccChHHHHHHHHHHhcC-CCceEEEeccCCc
Q 003796 151 VASASSFSEESMSYYIDSFGNQCLSVFRSLG-LPSTAVLIRDLPT 194 (795)
Q Consensus 151 ~idas~g~~~~~~~~fe~eg~e~L~~l~aqG-~P~vigVl~~Ld~ 194 (795)
++|.+.- ..|+.--...+..++.+. =+.++.|.+..|.
T Consensus 79 vyd~~~~------~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl 117 (176)
T cd04133 79 AFSLISR------ASYENVLKKWVPELRHYAPNVPIVLVGTKLDL 117 (176)
T ss_pred EEEcCCH------HHHHHHHHHHHHHHHHhCCCCCEEEEEeChhh
Confidence 9998742 335443223444454332 1233445666664
No 332
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=24.14 E-value=2.2e+02 Score=29.03 Aligned_cols=55 Identities=11% Similarity=0.162 Sum_probs=32.7
Q ss_pred eEEEEeCCCCC-hHHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEe
Q 003796 124 RTSVLQAPHGD-LVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLI 189 (795)
Q Consensus 124 Ritfie~~~~d-l~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl 189 (795)
.+.+|-||+.- .....-++..||.||+++.++.. --....+.++.|+ + -.++|++
T Consensus 150 D~IiiD~pp~~~~~~~~~l~~~aD~viiV~~~~~~--------~~~~~~~~~~~l~--~-~~~~G~v 205 (207)
T TIGR03018 150 RIIIIDTPPLLVFSEARALARLVGQIVLVVEEGRT--------TQEAVKEALSALE--S-CKVLGVV 205 (207)
T ss_pred CEEEEECCCCcchhHHHHHHHhCCEEEEEEECCCC--------CHHHHHHHHHHhc--C-CCeEEEE
Confidence 46677776322 23455566778888888887641 1234566666666 2 2556664
No 333
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=24.14 E-value=1.6e+02 Score=33.44 Aligned_cols=70 Identities=11% Similarity=0.016 Sum_probs=42.3
Q ss_pred EEEEEecCCCccChhhHHHHHHHhhccCCC-CC------------cceEEEecCc-------------eeeEEEEeCCCC
Q 003796 80 RVIVLFGLSASVNLNSVREDLLRQLSSEGT-GA------------LSSTVSSSKY-------------RLRTSVLQAPHG 133 (795)
Q Consensus 80 ~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~-~~------------g~~tv~~~r~-------------k~Ritfie~~~~ 133 (795)
.=++|||+|..+.+ +| .+.+|+... .. |.+.+.-.|+ -.++.|+..| .
T Consensus 3 lk~GivGlPn~GKS-Tl----fnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~Dia-G 76 (368)
T TIGR00092 3 LSGGIVGLPNVGKS-TL----FAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIA-G 76 (368)
T ss_pred ceEEEECCCCCChH-HH----HHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEecc-c
Confidence 34789999998775 56 666666554 22 3232221111 0245555443 2
Q ss_pred C----------hHHHHHHHhhhceEEEeeeCC
Q 003796 134 D----------LVGCMEMAKVADLVAFVASAS 155 (795)
Q Consensus 134 d----------l~~~LD~aKvADlVll~idas 155 (795)
- =+..|...+.+|.++.|+++.
T Consensus 77 lv~gAs~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 77 LVGGASKGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred cccchhcccCcchHHHHHHHhCCEEEEEEeCC
Confidence 1 136888889999999999986
No 334
>KOG2972 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.99 E-value=5e+02 Score=28.01 Aligned_cols=160 Identities=14% Similarity=0.108 Sum_probs=81.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhh------hcccCCCCCCCCEEEE---EecCCCcc--------ChhhHHHHHHHhhccCC
Q 003796 46 AKAARVQRNKMLRDQKRLALLK------EKRASSGIASPPRVIV---LFGLSASV--------NLNSVREDLLRQLSSEG 108 (795)
Q Consensus 46 ~K~~Rr~~a~q~r~~Kr~~v~~------~~R~~~~~~~pP~iV~---Vvg~~~~~--------~~~sl~~~lvk~~~~~~ 108 (795)
-+..+| -|..+-..|++.+|. .+|..| .+++-+.-+ ++||++.. +..-.+..|-+.+.+++
T Consensus 71 p~lN~~-LAtlle~ak~~~vpkd~ien~i~ras~-k~~~a~e~~~ye~~gp~GV~liVealTdnknr~~~~iRs~~nk~G 148 (276)
T KOG2972|consen 71 PELNMR-LATLLESAKKISVPKDGIENAINRASG-KEGSAVEFIEYEAMGPSGVGLIVEALTDNKNRAASSIRSIFNKHG 148 (276)
T ss_pred chhhhH-HHHHHHHHHhcCCCHHHHHHHHHHhcc-CCCCceEEEEEeeecCCceEEEEEeeeccHhHHHHHHHHHHHHcC
Confidence 344454 344455566666654 234333 444444443 68888722 23333333344556666
Q ss_pred -CCCcceEEEecCceeeEEEEeCCCCChHHHHHHHhhhceEEEeeeCCCcccccc---ccccC-----hHHHHHHHHHHh
Q 003796 109 -TGALSSTVSSSKYRLRTSVLQAPHGDLVGCMEMAKVADLVAFVASASSFSEESM---SYYID-----SFGNQCLSVFRS 179 (795)
Q Consensus 109 -~~~g~~tv~~~r~k~Ritfie~~~~dl~~~LD~aKvADlVll~idas~g~~~~~---~~~fe-----~eg~e~L~~l~a 179 (795)
...++..+... ||.+++-+++..+| -++|+..-+=+..+-.++... ++.++ .++|+ ...-.+++-|..
T Consensus 149 G~s~~~~r~~Fd-kKG~Vv~V~~~~~d-k~vL~ie~ie~~A~d~~~~~~-~e~d~eeer~~fkiv~e~ssl~qV~~~Lr~ 225 (276)
T KOG2972|consen 149 GASASGVRFLFD-KKGVVVNVPPEKRD-KDVLNIEAIEAGAEDIVAEPV-LEIDEEEEREEFKIVTEPSSLNQVAHKLRS 225 (276)
T ss_pred CcccccceeEEe-ccceEEecChhhcc-hhhhhHHHHHhcccccccCcc-cccccccccceeEEEeccchHHHHHHHhhc
Confidence 33466666655 46677777765455 556666665555544444332 22221 11121 123456778888
Q ss_pred cCCCceEEEeccCCc-----chhhhHHHHHHHHhhc
Q 003796 180 LGLPSTAVLIRDLPT-----DLKKRKDLKKMCISSL 210 (795)
Q Consensus 180 qG~P~vigVl~~Ld~-----~~Kk~~~~kK~lk~~f 210 (795)
-||.-.=.-|.++|. +.--+.+++|.++...
T Consensus 226 ~G~~i~d~~le~~P~~~vev~~~~lEk~qkL~q~L~ 261 (276)
T KOG2972|consen 226 KGFEIKDSGLEFIPLEEVEVDVPALEKIQKLIQALY 261 (276)
T ss_pred CCceeeccccccccCCccccCccchHHHHHHHHHHh
Confidence 888766444555552 1122444555555433
No 335
>PRK12735 elongation factor Tu; Reviewed
Probab=23.74 E-value=1.1e+03 Score=26.77 Aligned_cols=120 Identities=11% Similarity=0.071 Sum_probs=67.8
Q ss_pred CCCCCCcEEEEEEecCchhHHhhhccccCCCcEEEEec--ccccceeeEEEEEEEecCCC--cccCCCCCeEEEEeeeee
Q 003796 553 DSVPASLYVRLHIKEVPAGIAHRLCEMAERSPLIASGL--LQHESKMSVLHFSVKKHDTY--DAPIKAKEELIFHVGFRQ 628 (795)
Q Consensus 553 ~g~~~G~yVri~i~~vp~~~~~~~~~~~~~~Plil~gL--l~~E~k~svv~~~ikrh~~~--~~~lKSkdpLi~s~GwRR 628 (795)
+.+.+|..|.|.|+++..+-+. +=.||+.- ++.-.++ -.++.+-.|... +.||+...+.++++|--|
T Consensus 269 ~~a~aGd~v~l~L~~i~~~~i~--------rG~vl~~~~~~~~~~~f-~a~i~vl~~~~~~~~~~i~~g~~~~l~~~t~~ 339 (396)
T PRK12735 269 DEGQAGDNVGVLLRGTKREDVE--------RGQVLAKPGSIKPHTKF-EAEVYVLSKEEGGRHTPFFNGYRPQFYFRTTD 339 (396)
T ss_pred CEECCCCEEEEEeCCCcHHHCC--------cceEEEcCCCCCcceEE-EEEEEEEecccCCCCCcccCCCeeEEEeccce
Confidence 5578999999999987643221 22344332 1111111 123333333221 368888889999999888
Q ss_pred eeeeeeeccCCCCCCceEEecccCCCceEEEEEE--eecCCCCccEEEEEeCCCCCCCeEEEEeEEecc
Q 003796 629 FVARPIFSSDNMNSDKHKMERFLHAGCFSVASIY--APICFPPLPLIVLKSADGGVAPAVAAVGSLRSI 695 (795)
Q Consensus 629 Fq~~PifS~~~~~~~r~k~~ky~~~~~~~~Atfy--gPi~~~~t~vl~f~~~~~~~~~ri~atG~vl~~ 695 (795)
..+.-.. . + + .+++.++..++|.+. .|++.-+.+=++++.. -+.+|.|.|+.+
T Consensus 340 ~~~~i~~-~-~--~-----~~~l~~g~~a~v~l~~~~p~~~~~~~rfilR~~-----g~tv~~G~V~~v 394 (396)
T PRK12735 340 VTGTIEL-P-E--G-----VEMVMPGDNVKMTVELIAPIAMEEGLRFAIREG-----GRTVGAGVVAKI 394 (396)
T ss_pred EEEEEEc-c-C--C-----CceeCCCCEEEEEEEECceEEEeECCEEEEEcC-----CcEEEEEEEEEe
Confidence 5544211 1 1 1 246777877777665 5654333344445432 268888988764
No 336
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=23.63 E-value=1.2e+03 Score=27.20 Aligned_cols=129 Identities=16% Similarity=0.201 Sum_probs=69.4
Q ss_pred CCCCCCcEEEEEEecCchhHHhhhccccCCCcEEEEec--cc-ccceeeEEEEEEEecCCCcccCCCCCeEEEEeeeeee
Q 003796 553 DSVPASLYVRLHIKEVPAGIAHRLCEMAERSPLIASGL--LQ-HESKMSVLHFSVKKHDTYDAPIKAKEELIFHVGFRQF 629 (795)
Q Consensus 553 ~g~~~G~yVri~i~~vp~~~~~~~~~~~~~~Plil~gL--l~-~E~k~svv~~~ikrh~~~~~~lKSkdpLi~s~GwRRF 629 (795)
+-+.+|..|.|.|+++...-+. +=.||+.- .| ...+.=-.++.+-.| +.||+..-..+++||..|-
T Consensus 288 ~~a~aG~~v~i~L~~i~~~~v~--------rG~vl~~~~~~p~~~~~~f~a~i~~l~~---~~~i~~G~~~vl~~~t~~~ 356 (446)
T PTZ00141 288 AEAVPGDNVGFNVKNVSVKDIK--------RGYVASDSKNDPAKECADFTAQVIVLNH---PGQIKNGYTPVLDCHTAHI 356 (446)
T ss_pred CEECCCCEEEEEECCCCHHHcC--------CceEEecCCCCCCccceEEEEEEEEECC---CCccCCCCeEEEEEeceEE
Confidence 4578899999999987653221 22233332 11 111111112222222 4688888777799998775
Q ss_pred ee--eeeeccCCCC-CCce-EEecccCCCceEEEEEE--eecCCC------CccEEEEEeCCCCCCCeEEEEeEEeccCC
Q 003796 630 VA--RPIFSSDNMN-SDKH-KMERFLHAGCFSVASIY--APICFP------PLPLIVLKSADGGVAPAVAAVGSLRSIDP 697 (795)
Q Consensus 630 q~--~PifS~~~~~-~~r~-k~~ky~~~~~~~~Atfy--gPi~~~------~t~vl~f~~~~~~~~~ri~atG~vl~~d~ 697 (795)
.+ ..|.+.-+.+ +.+. +.-++++++..+++.+- -||+.- ..+=++++.. -..+|.|.|+.+.+
T Consensus 357 ~~~i~~i~~~ld~~t~~~~~~~p~~l~~g~~a~v~l~~~~pi~~e~~~~~~~lgrfilrd~-----g~tva~G~I~~v~~ 431 (446)
T PTZ00141 357 ACKFAEIESKIDRRSGKVLEENPKAIKSGDAAIVKMVPTKPMCVEVFNEYPPLGRFAVRDM-----KQTVAVGVIKSVEK 431 (446)
T ss_pred EEEEEEEEEEeccccccccCCCCcEECCCCEEEEEEEECCceEEeecccCCCCccEEEEEC-----CCEEEEEEEEEEec
Confidence 43 3344442322 1111 23468888988888775 343322 2222233332 15789999887653
No 337
>cd00591 HU_IHF Integration host factor (IHF) and HU are small heterodimeric members of the DNABII protein family that bind and bend DNA, functioning as architectural factors in many cellular processes including transcription, site-specific recombination, and higher-order nucleoprotein complex assembly. The dimer subunits associate to form a compact globular core from which two beta ribbon arms (one from each subunit) protrude. The beta arms track and bind the DNA minor groove. Despite sequence and structural similarity, IHF and HU can be distinguished by their different DNA substrate preferences.
Probab=23.57 E-value=42 Score=29.33 Aligned_cols=21 Identities=24% Similarity=0.479 Sum_probs=18.0
Q ss_pred CCCCCCeEEeCCCCceeecee
Q 003796 282 CLSVNQLVHISGAGDFQLGKI 302 (795)
Q Consensus 282 ~l~~n~lVHIpG~GDfqi~~I 302 (795)
.|..+..|||+|+|-|.+..-
T Consensus 34 ~L~~g~~V~l~~~G~F~~~~~ 54 (87)
T cd00591 34 ALAKGEKVELPGFGTFEVRER 54 (87)
T ss_pred HHhCCCeEEEeCCEEEEEEEE
Confidence 466788999999999999864
No 338
>PRK08116 hypothetical protein; Validated
Probab=23.40 E-value=2.3e+02 Score=30.56 Aligned_cols=106 Identities=13% Similarity=0.080 Sum_probs=52.3
Q ss_pred EEEEEecCCCccChhhHHHHHHHhhccCCCCCcceEEEecCceeeE--EEEeCCCCChHHHHHHHhhhceEEEeeeCCCc
Q 003796 80 RVIVLFGLSASVNLNSVREDLLRQLSSEGTGALSSTVSSSKYRLRT--SVLQAPHGDLVGCMEMAKVADLVAFVASASSF 157 (795)
Q Consensus 80 ~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~~g~~tv~~~r~k~Ri--tfie~~~~dl~~~LD~aKvADlVll~idas~g 157 (795)
.-+.+.|+++++.. .|+..+.+.+..... ..+.+.++.+-..+ +|-.-...+...+++..+-+| ||+||-- |
T Consensus 115 ~gl~l~G~~GtGKT-hLa~aia~~l~~~~~--~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~~~d--lLviDDl-g 188 (268)
T PRK08116 115 VGLLLWGSVGTGKT-YLAACIANELIEKGV--PVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLVNAD--LLILDDL-G 188 (268)
T ss_pred ceEEEECCCCCCHH-HHHHHHHHHHHHcCC--eEEEEEHHHHHHHHHHHHhccccccHHHHHHHhcCCC--EEEEecc-c
Confidence 44778899888764 444444555533321 11222221111111 011000134456777777778 4666653 3
Q ss_pred cccccccccChHHHHHHHHHHhcCCCceEEEeccCCc
Q 003796 158 SEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT 194 (795)
Q Consensus 158 ~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~ 194 (795)
.+..+ +.....-|++|+....+|.|.++. +++++
T Consensus 189 ~e~~t-~~~~~~l~~iin~r~~~~~~~IiT--sN~~~ 222 (268)
T PRK08116 189 AERDT-EWAREKVYNIIDSRYRKGLPTIVT--TNLSL 222 (268)
T ss_pred CCCCC-HHHHHHHHHHHHHHHHCCCCEEEE--CCCCH
Confidence 21111 112234577888877889986553 56665
No 339
>KOG3163 consensus Uncharacterized conserved protein related to ribosomal protein S8E [General function prediction only]
Probab=23.20 E-value=34 Score=35.18 Aligned_cols=70 Identities=20% Similarity=0.393 Sum_probs=47.0
Q ss_pred eeeeeeeeeeeeccCCCCCCceEEecccCCCc--e---------EEEEEEeecCCCCccEEEEEeCCCC---CCCeEEEE
Q 003796 624 VGFRQFVARPIFSSDNMNSDKHKMERFLHAGC--F---------SVASIYAPICFPPLPLIVLKSADGG---VAPAVAAV 689 (795)
Q Consensus 624 ~GwRRFq~~PifS~~~~~~~r~k~~ky~~~~~--~---------~~AtfygPi~~~~t~vl~f~~~~~~---~~~ri~at 689 (795)
-+|.|..|.+.|-.++-..-=-||+||+.+-. + .-+||. .|++.++..... +++-++.-
T Consensus 144 k~WKRmvTk~tFVg~~FTRkPpKyERfIRPm~lRfkkAhVthpEL~~Tf~-------LpIigvKKNP~sp~yT~LGvitk 216 (260)
T KOG3163|consen 144 KAWKRMVTKVTFVGDGFTRKPPKYERFIRPMGLRFKKAHVTHPELKVTFC-------LPIIGVKKNPSSPMYTSLGVITK 216 (260)
T ss_pred hHHHhhhheeeeecCCcccCCchHhhhhchhhhhhhhccccChhhceEEE-------eeeeEeccCCCCcceeecceeec
Confidence 47999999999988432223468999987631 1 123443 355666665543 56778889
Q ss_pred eEEeccCCcce
Q 003796 690 GSLRSIDPDRI 700 (795)
Q Consensus 690 G~vl~~d~~r~ 700 (795)
|+|+++|-+-.
T Consensus 217 GTviEvnVseL 227 (260)
T KOG3163|consen 217 GTVIEVNVSEL 227 (260)
T ss_pred ceEEEEecccc
Confidence 99999886643
No 340
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=23.18 E-value=4.5e+02 Score=21.97 Aligned_cols=66 Identities=20% Similarity=0.199 Sum_probs=40.1
Q ss_pred EEEEecCCCccChhhHHHHHHHhhccCCCCCcceEEEecCceeeEEEEeCCCCChHHH----HHHHhhhceEEEeeeCCC
Q 003796 81 VIVLFGLSASVNLNSVREDLLRQLSSEGTGALSSTVSSSKYRLRTSVLQAPHGDLVGC----MEMAKVADLVAFVASASS 156 (795)
Q Consensus 81 iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~~g~~tv~~~r~k~Ritfie~~~~dl~~~----LD~aKvADlVll~idas~ 156 (795)
+|++.|.+++++. .+...+...+.+. |.-++.+. .+.++.++ ..+... .-++..+|.++++++++.
T Consensus 1 ~~~~~g~~G~Gkt-t~~~~l~~~l~~~----g~~v~~~~----d~iivD~~-~~~~~~~~~~~~~~~~~~~vi~v~~~~~ 70 (99)
T cd01983 1 VIVVTGKGGVGKT-TLAANLAAALAKR----GKRVLLID----DYVLIDTP-PGLGLLVLLCLLALLAADLVIIVTTPEA 70 (99)
T ss_pred CEEEECCCCCCHH-HHHHHHHHHHHHC----CCeEEEEC----CEEEEeCC-CCccchhhhhhhhhhhCCEEEEecCCch
Confidence 3566677665543 3333335555442 22233332 67788887 444333 578899999999999885
No 341
>PRK13037 superantigen-like protein; Reviewed
Probab=23.06 E-value=2.3e+02 Score=30.00 Aligned_cols=137 Identities=12% Similarity=0.191 Sum_probs=83.9
Q ss_pred eeeeeeeeeeccCCCCC-----CceEEecccCCCceEEEEEEee-------cCCCCccEEEEEeCCCCCCCeEEEEeEEe
Q 003796 626 FRQFVARPIFSSDNMNS-----DKHKMERFLHAGCFSVASIYAP-------ICFPPLPLIVLKSADGGVAPAVAAVGSLR 693 (795)
Q Consensus 626 wRRFq~~PifS~~~~~~-----~r~k~~ky~~~~~~~~AtfygP-------i~~~~t~vl~f~~~~~~~~~ri~atG~vl 693 (795)
-++|.|.|-|...+..+ +-.++..|.+.+...-.+.+|+ -..++.-|.++++..+ .+-+.+-.|.|.
T Consensus 42 L~~YYt~~s~e~~N~~g~~~~~~g~~~~~~~~~~~~~~i~L~G~d~~k~~~~~~~~~DVF~V~E~~~-~~~~~~s~GGVT 120 (226)
T PRK13037 42 LKHYYNKPVLERKNVTGYKYTEKGKDYIDVIVDNQYSQISLVGSDKDKFKDGDNSNIDVFILREGDS-RQATNYSIGGVT 120 (226)
T ss_pred HHHHccCCCeeEEcceEEEecCCCcEEEEEccCceEEEEEEEcCchhhhccCCCCCccEEEEecCCC-CcCceEEECCEE
Confidence 35667777665532221 2345788889898889999997 3355666777788765 567888999998
Q ss_pred ccCCccee--EEeEEEE---------eeeeEEeeeeEEEeecCCChhhcc--cc--ccceeeecccccceeeCCCCCCce
Q 003796 694 SIDPDRII--LKKIVLT---------GYPQRVSKLKAIVRYMFHNPEDVR--WF--KPVEVWTKCGRRGRIKEPVGTHGA 758 (795)
Q Consensus 694 ~~d~~r~I--vKklkLt---------G~P~KI~K~tA~Ir~MF~n~~dV~--~F--k~a~L~TksGirG~IK~~lgt~G~ 758 (795)
..|..... ++-.+|. +.+|+|.|+...++- +|.. ++ +--.|+...=-.|.|+=-..-.+.
T Consensus 121 k~n~~~~~d~~~~~i~~~~~~~~~~~~~~~~i~Ke~VTLKE-----LDfKlRk~Li~~~~LY~~~~~~G~I~i~mkdg~~ 195 (226)
T PRK13037 121 KTNSQPYIDYIHTPILEIKKGKEEPQSSLYQIYKEDISLKE-----LDYRLRERAIKQHGLYSNGLKQGQITITMKDGKS 195 (226)
T ss_pred cCCCcccccccccceEEEEcCCCcceeeeEEecccEEeHHH-----HhHHHHHHHHHHhccccCCCCceEEEEEeCCCCE
Confidence 87776421 1122222 468888888888763 3321 11 122233333345677766666666
Q ss_pred eEEEeccccc
Q 003796 759 MKCVFNGILQ 768 (795)
Q Consensus 759 fka~Fe~~i~ 768 (795)
|-.=...++.
T Consensus 196 yt~DL~kKLq 205 (226)
T PRK13037 196 HTIDLSQKLE 205 (226)
T ss_pred EEEEcchhcc
Confidence 6555556654
No 342
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=23.03 E-value=2.3e+02 Score=27.82 Aligned_cols=62 Identities=13% Similarity=0.143 Sum_probs=43.8
Q ss_pred eEEEEeCCCCChHHHHHHHhhhceEEEeeeCCCccccccccccC-hHHHHHHHHHHhcCCC-ceEEE-eccCCc
Q 003796 124 RTSVLQAPHGDLVGCMEMAKVADLVAFVASASSFSEESMSYYID-SFGNQCLSVFRSLGLP-STAVL-IRDLPT 194 (795)
Q Consensus 124 Ritfie~~~~dl~~~LD~aKvADlVll~idas~g~~~~~~~~fe-~eg~e~L~~l~aqG~P-~vigV-l~~Ld~ 194 (795)
-+.+|.|++.--..+.-+...||++|++++++. ++ .....++..|+.-|.+ +.+++ ++..+.
T Consensus 96 D~iiiD~~~~~~~~~~~~l~~ad~viv~~~~~~---------~~i~~~~~~~~~l~~~~~~~~~~~vv~N~v~~ 160 (195)
T PF01656_consen 96 DYIIIDTPPGLSDPVRNALAAADYVIVPIEPDP---------SSIEGAERLIELLKRLGKKLKIIGVVINRVDP 160 (195)
T ss_dssp SEEEEEECSSSSHHHHHHHHTSSEEEEEEESSH---------HHHHHHHHHHHHHHHHTHTEEEEEEEEEEETS
T ss_pred cceeecccccccHHHHHHHHhCceeeeecCCcH---------HHHHHHHHHHHHHHHhccccceEEEEEeeeCC
Confidence 567888875555556678899999999999873 22 2456677888877754 35554 777765
No 343
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=23.03 E-value=4.6e+02 Score=26.84 Aligned_cols=18 Identities=28% Similarity=0.529 Sum_probs=15.8
Q ss_pred CEEEEEecCCCccChhhH
Q 003796 79 PRVIVLFGLSASVNLNSV 96 (795)
Q Consensus 79 P~iV~Vvg~~~~~~~~sl 96 (795)
|++|++|||++.++...+
T Consensus 1 p~vi~lvGptGvGKTTt~ 18 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTI 18 (196)
T ss_dssp SEEEEEEESTTSSHHHHH
T ss_pred CEEEEEECCCCCchHhHH
Confidence 899999999998887665
No 344
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=22.99 E-value=63 Score=37.06 Aligned_cols=69 Identities=23% Similarity=0.214 Sum_probs=55.7
Q ss_pred eeeEEEEeCCC--CChHHHHHHHhhhceEEEeeeCCCc-cccccccccCh--HHHHHHHHHHhcCCCceEEEeccCCc
Q 003796 122 RLRTSVLQAPH--GDLVGCMEMAKVADLVAFVASASSF-SEESMSYYIDS--FGNQCLSVFRSLGLPSTAVLIRDLPT 194 (795)
Q Consensus 122 k~Ritfie~~~--~dl~~~LD~aKvADlVll~idas~g-~~~~~~~~fe~--eg~e~L~~l~aqG~P~vigVl~~Ld~ 194 (795)
++|+|++..|- .=+-+||--|-=||+-+|+++|.-| || .+||- +|-|=....+++|+-..|.+++.+|-
T Consensus 156 ~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefe----tgFerGgQTREha~Lakt~gv~~lVv~vNKMdd 229 (501)
T KOG0459|consen 156 NKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFE----TGFEKGGQTREHAMLAKTAGVKHLIVLINKMDD 229 (501)
T ss_pred ceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhh----cccccccchhHHHHHHHhhccceEEEEEEeccC
Confidence 58999999873 2367899999999999999999765 11 25665 67788888899999999999998873
No 345
>smart00411 BHL bacterial (prokaryotic) histone like domain.
Probab=22.87 E-value=40 Score=29.71 Aligned_cols=21 Identities=24% Similarity=0.453 Sum_probs=17.7
Q ss_pred CCCCCCeEEeCCCCceeecee
Q 003796 282 CLSVNQLVHISGAGDFQLGKI 302 (795)
Q Consensus 282 ~l~~n~lVHIpG~GDfqi~~I 302 (795)
.|..+..|+|+|+|-|.+..-
T Consensus 35 ~L~~g~~V~i~g~G~F~~~~~ 55 (90)
T smart00411 35 ALKKGEKVELRGFGTFEVRER 55 (90)
T ss_pred HHhCCCeEEEeCcEEEEEEee
Confidence 466678999999999999864
No 346
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=22.70 E-value=2.8e+02 Score=31.46 Aligned_cols=78 Identities=13% Similarity=0.056 Sum_probs=44.6
Q ss_pred eEEEEeCCCCChHHHHHHHhhhceEEEeeeCCCccccccccccChHHH--------HHHHHHHhcCCC---ceEEE-ecc
Q 003796 124 RTSVLQAPHGDLVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGN--------QCLSVFRSLGLP---STAVL-IRD 191 (795)
Q Consensus 124 Ritfie~~~~dl~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~--------e~L~~l~aqG~P---~vigV-l~~ 191 (795)
.+.+|-||+.-=...+.+.-+||.||+.+.++. ++.++. +++..++..|.+ ..++| ++.
T Consensus 236 D~IiiD~pp~~~~~~~~al~aad~viipv~p~~---------~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~ 306 (387)
T TIGR03453 236 DVVVIDCPPQLGFLTLSALCAATGVLITVHPQM---------LDVMSMSQFLLMTGDLLGVVREAGGNLSYDFMRYLVTR 306 (387)
T ss_pred CEEEEeCCccHhHHHHHHHHHcCeeEEcCCCch---------hhHHHHHHHHHHHHHHHHHHHHhcCCCCCceeEEEEee
Confidence 457788884433447778889999999998763 454432 234455555432 24554 555
Q ss_pred CCcchhhhHHHHHHHHhhc
Q 003796 192 LPTDLKKRKDLKKMCISSL 210 (795)
Q Consensus 192 Ld~~~Kk~~~~kK~lk~~f 210 (795)
.+......+.+...++..|
T Consensus 307 ~~~~~~~~~~~~~~l~~~~ 325 (387)
T TIGR03453 307 YEPNDGPQAQMVAFLRSLF 325 (387)
T ss_pred ECCCCccHHHHHHHHHHHh
Confidence 5541122344555555544
No 347
>PRK04328 hypothetical protein; Provisional
Probab=22.13 E-value=3.9e+02 Score=28.32 Aligned_cols=28 Identities=14% Similarity=0.012 Sum_probs=21.3
Q ss_pred hhhcccCCCCCCCCEEEEEecCCCccCh
Q 003796 66 LKEKRASSGIASPPRVIVLFGLSASVNL 93 (795)
Q Consensus 66 ~~~~R~~~~~~~pP~iV~Vvg~~~~~~~ 93 (795)
+..++.++|.-++..++.|.|+++++..
T Consensus 10 ~~LD~lL~GGip~gs~ili~G~pGsGKT 37 (249)
T PRK04328 10 PGMDEILYGGIPERNVVLLSGGPGTGKS 37 (249)
T ss_pred hhHHHHhcCCCcCCcEEEEEcCCCCCHH
Confidence 3455666665678999999999998774
No 348
>PRK11778 putative inner membrane peptidase; Provisional
Probab=21.96 E-value=2.8e+02 Score=31.20 Aligned_cols=102 Identities=17% Similarity=0.226 Sum_probs=55.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCEEEEEecCCCccChhhHHHHHHHhhccCCCCCcceEEEecCcee
Q 003796 44 KGAKAARVQRNKMLRDQKRLALLKEKRASSGIASPPRVIVLFGLSASVNLNSVREDLLRQLSSEGTGALSSTVSSSKYRL 123 (795)
Q Consensus 44 ~~~K~~Rr~~a~q~r~~Kr~~v~~~~R~~~~~~~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~~g~~tv~~~r~k~ 123 (795)
.+.|.+++...++.++++++.....+. ...|+ |+||+..+++..... ..
T Consensus 60 ~~~~~~~k~~~k~~~~~~k~~~~~~~~-----~~~~~-v~VI~~~G~I~~~~~----------------------~~--- 108 (330)
T PRK11778 60 LLDKKELKAWHKAQKKKEKQEAKAAKA-----KSKPR-LFVLDFKGDIDASEV----------------------ES--- 108 (330)
T ss_pred hCCHHHHHHHHHHHHHHHHHHhhhhhc-----cCCCe-EEEEEEEEEECCCcc----------------------hh---
Confidence 345666665555544444444332221 12344 888888887654322 00
Q ss_pred eEEEEeCCCCChHHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEE
Q 003796 124 RTSVLQAPHGDLVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVL 188 (795)
Q Consensus 124 Ritfie~~~~dl~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigV 188 (795)
+ ...+.+.|..|+-.|-|||-||+--|... +. ......|..++..|.|-++.+
T Consensus 109 ----l---~e~i~a~l~~A~~~~aVvLridSpGG~v~----~s-~~a~~~l~~lr~~~kpVva~v 161 (330)
T PRK11778 109 ----L---REEITAILAVAKPGDEVLLRLESPGGVVH----GY-GLAASQLQRLRDAGIPLTVAV 161 (330)
T ss_pred ----h---HHHHHHHHHhccCCCeEEEEEeCCCCchh----HH-HHHHHHHHHHHhcCCCEEEEE
Confidence 0 14566677777766889999998766210 11 123334556677787766544
No 349
>PRK10037 cell division protein; Provisional
Probab=21.68 E-value=3.5e+02 Score=28.42 Aligned_cols=33 Identities=12% Similarity=0.148 Sum_probs=27.3
Q ss_pred eeEEEEeCCCCChHHHHHHHhhhceEEEeeeCC
Q 003796 123 LRTSVLQAPHGDLVGCMEMAKVADLVAFVASAS 155 (795)
Q Consensus 123 ~Ritfie~~~~dl~~~LD~aKvADlVll~idas 155 (795)
--+.+|.||+..-..+..+...||.||+++.++
T Consensus 118 yD~iiIDtpp~~~~~~~~al~aaD~vlvpv~~~ 150 (250)
T PRK10037 118 YQWILLDLPRGASPLTRQLLSLCDHSLAIVNVD 150 (250)
T ss_pred CCEEEEECCCCccHHHHHHHHhCCEEEEEcCcC
Confidence 467889998766566788899999999999876
No 350
>PF00216 Bac_DNA_binding: Bacterial DNA-binding protein; InterPro: IPR000119 Bacteria synthesise a set of small, usually basic proteins of about 90 residues that bind DNA and are known as histone-like proteins [, ]. Examples include the HU protein in Escherichia coli is a dimer of closely related alpha and beta chains and in other bacteria can be a dimer of identical chains. HU-type proteins have been found in a variety of eubacteria, cyanobacteria and archaebacteria, and are also encoded in the chloroplast genome of some algae []. The integration host factor (IHF), a dimer of closely related chains which seem to function in genetic recombination as well as in translational and transcriptional control [] is found in enterobacteria and viral proteins include the African Swine fever virus protein A104R (or LMW5-AR) []. The exact function of these proteins is not yet clear but they are capable of wrapping DNA and stabilising it from denaturation under extreme environmental conditions. The structure is known for one of these proteins []. The protein exists as a dimer and two "beta-arms" function as the non-specific binding site for bacterial DNA. ; GO: 0003677 DNA binding; PDB: 3C4I_B 2O97_A 1MUL_A 1P78_A 1P51_C 1P71_B 2HT0_A 1OWG_A 2IIF_A 1OUZ_A ....
Probab=21.37 E-value=37 Score=29.86 Aligned_cols=20 Identities=25% Similarity=0.499 Sum_probs=16.3
Q ss_pred CCCCCCeEEeCCCCceeece
Q 003796 282 CLSVNQLVHISGAGDFQLGK 301 (795)
Q Consensus 282 ~l~~n~lVHIpG~GDfqi~~ 301 (795)
.|..|..|+|+|+|-|.+..
T Consensus 35 ~L~~g~~V~l~g~G~F~~~~ 54 (90)
T PF00216_consen 35 ALKEGESVKLPGFGTFSVKE 54 (90)
T ss_dssp HHHTT-EEEETTTEEEEEEE
T ss_pred HHhcCCeEEeeceeEEEEec
Confidence 35678889999999999986
No 351
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=21.24 E-value=7.1e+02 Score=28.60 Aligned_cols=110 Identities=15% Similarity=0.209 Sum_probs=65.4
Q ss_pred hhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc-chhhhHHHHHHHHhhccc----------
Q 003796 144 VADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT-DLKKRKDLKKMCISSLTS---------- 212 (795)
Q Consensus 144 vADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~-~~Kk~~~~kK~lk~~f~~---------- 212 (795)
.-|+-.|||-|..|. =--|.|-|.+..+.-+| |+.|+|.+|. ...=...+-|.|.+.+.+
T Consensus 244 ~PDf~MLMiGaNaGI--------iGmTKEHLgLALaL~VP-VfvVVTKIDMCPANiLqEtmKll~rllkS~gcrK~PvlV 314 (641)
T KOG0463|consen 244 MPDFTMLMIGANAGI--------IGMTKEHLGLALALHVP-VFVVVTKIDMCPANILQETMKLLTRLLKSPGCRKLPVLV 314 (641)
T ss_pred CCCceEEEecccccc--------eeccHHhhhhhhhhcCc-EEEEEEeeccCcHHHHHHHHHHHHHHhcCCCcccCcEEE
Confidence 468889999888762 22357778877787787 5667788885 112234566666666654
Q ss_pred -----------ccCC--CCeeEEeCC-HHHHHHHHHHHhhccccCcccccCCC-eEEEEeeEecc
Q 003796 213 -----------EFPE--DCKFYAADT-KDELHKFLWLFKEQRLTVPHWRNQRP-FLMAQKVDVVA 262 (795)
Q Consensus 213 -----------ef~~--~~Klf~l~~-~~E~~nL~R~Is~~k~r~l~WR~~rp-YmLadr~e~~~ 262 (795)
-|+. -+-+|.+|+ .-+-+-|++.+-+.-.-....+++-| ..-+|.+-|.+
T Consensus 315 rs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLkmFLNlls~R~~~~E~~PAeFQIDD~Y~Vp 379 (641)
T KOG0463|consen 315 RSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLKMFLNLLSLRRQLNENDPAEFQIDDIYWVP 379 (641)
T ss_pred ecccceEEeeccCccccccceEEeccccCCChHHHHHHHhhcCcccccccCCCcceeecceEecC
Confidence 1221 134566665 34556777776665554445555554 34455555554
No 352
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=21.06 E-value=3.1e+02 Score=30.05 Aligned_cols=59 Identities=17% Similarity=0.175 Sum_probs=35.8
Q ss_pred eEEEEeCCCCChHHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEecc
Q 003796 124 RTSVLQAPHGDLVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRD 191 (795)
Q Consensus 124 Ritfie~~~~dl~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~ 191 (795)
.+.+|-||+.--.....++..||.||+++..+.. .+ .....+|..|..++ +++..|+.+
T Consensus 206 D~VIID~p~~~~~~~~~~L~~AD~vliV~~~~~~-------sl-~~a~r~l~~l~~~~-~~~~lVv~~ 264 (322)
T TIGR03815 206 DLVVVDLPRRLTPAAETALESADLVLVVVPADVR-------AV-AAAARVCPELGRRN-PDLRLVVRG 264 (322)
T ss_pred CEEEEeCCCCCCHHHHHHHHHCCEEEEEcCCcHH-------HH-HHHHHHHHHHhhhC-CCeEEEEeC
Confidence 4566667643333356778889999999877631 12 24566777777665 444444543
No 353
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=20.68 E-value=8.5e+02 Score=28.20 Aligned_cols=20 Identities=25% Similarity=0.368 Sum_probs=15.8
Q ss_pred CCCEEEEEecCCCccChhhH
Q 003796 77 SPPRVIVLFGLSASVNLNSV 96 (795)
Q Consensus 77 ~pP~iV~Vvg~~~~~~~~sl 96 (795)
.++.+|+++||++++....+
T Consensus 204 ~~~~ii~lvGptGvGKTTt~ 223 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTL 223 (407)
T ss_pred cCCeEEEEECCCCCCHHHHH
Confidence 56899999999997776433
No 354
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=20.65 E-value=93 Score=31.21 Aligned_cols=104 Identities=13% Similarity=0.044 Sum_probs=55.2
Q ss_pred EEEEecCCCccChhhHHHHHHHhhcc--CCCCCcceE-------E---EecCceeeEEEEeCCCCChHHHHHHHhhhceE
Q 003796 81 VIVLFGLSASVNLNSVREDLLRQLSS--EGTGALSST-------V---SSSKYRLRTSVLQAPHGDLVGCMEMAKVADLV 148 (795)
Q Consensus 81 iV~Vvg~~~~~~~~sl~~~lvk~~~~--~~~~~g~~t-------v---~~~r~k~Ritfie~~~~dl~~~LD~aKvADlV 148 (795)
+|.|+|++++++. +++..+...+.. .....+... + ...| ..++..+||| .+|...|... ...--
T Consensus 3 ~ili~G~~~sGKS-~~a~~l~~~~~~~~~~iat~~~~~~e~~~ri~~h~~~R-~~~w~t~E~~-~~l~~~i~~~-~~~~~ 78 (170)
T PRK05800 3 LILVTGGARSGKS-RFAERLAAQSGLQVLYIATAQPFDDEMAARIAHHRQRR-PAHWQTVEEP-LDLAELLRAD-AAPGR 78 (170)
T ss_pred EEEEECCCCccHH-HHHHHHHHHcCCCcEeCcCCCCChHHHHHHHHHHHhcC-CCCCeEeccc-ccHHHHHHhh-cCCCC
Confidence 6899999999886 454444544321 011111100 0 0011 3457789998 8999987652 11122
Q ss_pred EEeeeCCCcccccc---c--cccChHHHHHHHHHHhcCCCceEEE
Q 003796 149 AFVASASSFSEESM---S--YYIDSFGNQCLSVFRSLGLPSTAVL 188 (795)
Q Consensus 149 ll~idas~g~~~~~---~--~~fe~eg~e~L~~l~aqG~P~vigV 188 (795)
+++||+-.++..|. . ..+..+-.++++.|+..|.+.|+..
T Consensus 79 ~VlID~Lt~~~~n~l~~~~~~~~~~~l~~li~~L~~~~~tvVlVs 123 (170)
T PRK05800 79 CVLVDCLTTWVTNLLFEEGEEAIAAEIDALLAALQQLPAKIILVT 123 (170)
T ss_pred EEEehhHHHHHHHHhcccchHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 57778765542211 0 0112233567788887777655443
No 355
>PRK00049 elongation factor Tu; Reviewed
Probab=20.32 E-value=1.3e+03 Score=26.26 Aligned_cols=121 Identities=10% Similarity=-0.003 Sum_probs=69.3
Q ss_pred CCCCCCcEEEEEEecCchhHHhhhccccCCCcEEEEecc-cccceeeEEEEEEEecCCC--cccCCCCCeEEEEeeeeee
Q 003796 553 DSVPASLYVRLHIKEVPAGIAHRLCEMAERSPLIASGLL-QHESKMSVLHFSVKKHDTY--DAPIKAKEELIFHVGFRQF 629 (795)
Q Consensus 553 ~g~~~G~yVri~i~~vp~~~~~~~~~~~~~~Plil~gLl-~~E~k~svv~~~ikrh~~~--~~~lKSkdpLi~s~GwRRF 629 (795)
+-+.+|..|.|.|+++...- +. +=.||+.-- +...+.=..++.+-.|.-. ..+|+...+.+++||--|-
T Consensus 269 ~~a~~Gd~v~l~l~~i~~~~---i~-----~G~vl~~~~~~~~~~~f~a~i~vl~~~~~g~~~~i~~g~~~~~~~~t~~~ 340 (396)
T PRK00049 269 DEGQAGDNVGALLRGIKRED---VE-----RGQVLAKPGSITPHTKFEAEVYVLSKEEGGRHTPFFNGYRPQFYFRTTDV 340 (396)
T ss_pred CEEcCCCEEEEEeCCCCHHH---CC-----cceEEecCCCCCcceEEEEEEEEEecCcCCCCCcccCCCEEEEEEecCcE
Confidence 45789999999999876432 21 223444421 1111111233333333211 4688888888999998874
Q ss_pred eeeeeeccCCCCCCceEEecccCCCceEEEEEE--eecCCCCccEEEEEeCCCCCCCeEEEEeEEecc
Q 003796 630 VARPIFSSDNMNSDKHKMERFLHAGCFSVASIY--APICFPPLPLIVLKSADGGVAPAVAAVGSLRSI 695 (795)
Q Consensus 630 q~~PifS~~~~~~~r~k~~ky~~~~~~~~Atfy--gPi~~~~t~vl~f~~~~~~~~~ri~atG~vl~~ 695 (795)
...- ...+ + -+|+.+|..+++.|- .|++.-+.+=++++.. -+.+|-|.|+++
T Consensus 341 ~~~i--~l~~--~-----~~~l~~g~~a~v~i~~~~p~~~e~~~RfilR~~-----g~t~~~G~V~~v 394 (396)
T PRK00049 341 TGVI--ELPE--G-----VEMVMPGDNVEMTVELIAPIAMEEGLRFAIREG-----GRTVGAGVVTKI 394 (396)
T ss_pred EEEE--EecC--C-----CcccCCCCEEEEEEEECceEEEeeCCEEEEecC-----CcEEEEEEEEEe
Confidence 4332 1111 1 257888888888776 5665443344445532 267888888764
No 356
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=20.12 E-value=6e+02 Score=29.65 Aligned_cols=18 Identities=17% Similarity=0.305 Sum_probs=14.5
Q ss_pred CCCEEEEEecCCCccChh
Q 003796 77 SPPRVIVLFGLSASVNLN 94 (795)
Q Consensus 77 ~pP~iV~Vvg~~~~~~~~ 94 (795)
.+|.+|+|+||++++...
T Consensus 221 ~~~~vi~lvGptGvGKTT 238 (432)
T PRK12724 221 NQRKVVFFVGPTGSGKTT 238 (432)
T ss_pred CCCeEEEEECCCCCCHHH
Confidence 357899999999987753
Done!