Query 003796
Match_columns 795
No_of_seqs 150 out of 558
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 04:19:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003796.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003796hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wb1_A Translation elongation 99.9 5.6E-26 1.9E-30 259.9 20.2 167 610-781 303-481 (482)
2 3sjy_A Translation initiation 98.7 5.3E-07 1.8E-11 100.5 21.0 206 76-294 5-247 (403)
3 1d2e_A Elongation factor TU (E 98.6 5.2E-07 1.8E-11 100.4 17.6 210 78-303 2-253 (397)
4 1kk1_A EIF2gamma; initiation o 98.6 1E-06 3.6E-11 98.2 17.5 160 123-291 83-251 (410)
5 1s0u_A EIF-2-gamma, translatio 98.4 3.8E-06 1.3E-10 93.7 16.8 161 123-291 81-249 (408)
6 2c78_A Elongation factor TU-A; 98.4 1.5E-05 5E-10 88.8 21.0 215 76-305 8-273 (405)
7 3avx_A Elongation factor TS, e 98.3 1.6E-05 5.4E-10 98.2 19.2 218 76-309 293-550 (1289)
8 3mca_A HBS1, elongation factor 98.1 2.8E-06 9.7E-11 99.3 8.6 173 122-306 254-454 (592)
9 2elf_A Protein translation elo 97.7 0.00044 1.5E-08 76.2 15.0 201 81-305 23-242 (370)
10 1zun_B Sulfate adenylate trans 97.6 0.0025 8.5E-08 71.4 19.6 170 122-306 103-294 (434)
11 1f60_A Elongation factor EEF1A 97.5 0.0019 6.4E-08 73.1 18.2 173 122-304 84-292 (458)
12 3izq_1 HBS1P, elongation facto 97.4 0.0018 6.1E-08 76.0 16.5 178 122-304 244-452 (611)
13 3j2k_7 ERF3, eukaryotic polype 97.4 0.006 2.1E-07 68.5 19.9 170 122-304 94-291 (439)
14 3p26_A Elongation factor 1 alp 97.4 0.0043 1.5E-07 70.5 18.4 178 122-304 110-318 (483)
15 1jny_A EF-1-alpha, elongation 97.2 0.0053 1.8E-07 68.9 15.8 166 122-295 83-271 (435)
16 2ywe_A GTP-binding protein LEP 97.2 0.029 9.9E-07 65.6 22.4 166 122-305 72-242 (600)
17 3iev_A GTP-binding protein ERA 97.1 0.0045 1.5E-07 66.2 13.4 147 75-240 6-180 (308)
18 1r5b_A Eukaryotic peptide chai 97.0 0.0025 8.7E-08 72.2 11.9 172 122-305 120-321 (467)
19 3cb4_D GTP-binding protein LEP 96.9 0.07 2.4E-06 62.3 23.1 166 122-305 70-240 (599)
20 1g7s_A Translation initiation 96.9 0.0026 8.8E-08 74.4 10.9 209 79-303 5-281 (594)
21 3izy_P Translation initiation 96.9 0.0011 3.8E-08 76.4 6.9 206 79-303 4-224 (537)
22 1zo1_I IF2, translation initia 96.8 0.002 6.7E-08 73.8 8.6 197 79-293 4-214 (501)
23 4dhe_A Probable GTP-binding pr 96.8 0.01 3.5E-07 59.0 12.9 146 79-239 29-208 (223)
24 1svi_A GTP-binding protein YSX 96.4 0.03 1E-06 54.1 12.9 139 79-237 23-190 (195)
25 3pqc_A Probable GTP-binding pr 96.4 0.03 1E-06 53.8 12.4 129 80-225 24-175 (195)
26 2dy1_A Elongation factor G; tr 96.2 0.12 4.2E-06 61.0 18.9 105 78-194 8-138 (665)
27 1wf3_A GTP-binding protein; GT 96.2 0.098 3.4E-06 55.6 16.1 140 81-241 9-172 (301)
28 2lkc_A Translation initiation 96.1 0.046 1.6E-06 51.7 11.8 133 77-225 6-152 (178)
29 2qu8_A Putative nucleolar GTP- 95.9 0.094 3.2E-06 52.6 14.0 105 77-194 27-154 (228)
30 3clv_A RAB5 protein, putative; 95.9 0.073 2.5E-06 51.1 12.7 88 123-225 93-185 (208)
31 3tr5_A RF-3, peptide chain rel 95.9 0.35 1.2E-05 55.6 20.2 104 79-194 13-146 (528)
32 2rdo_7 EF-G, elongation factor 95.9 0.61 2.1E-05 55.4 22.9 79 123-210 82-162 (704)
33 1dar_A EF-G, elongation factor 95.8 0.36 1.2E-05 57.2 20.5 122 79-210 12-157 (691)
34 1zj6_A ADP-ribosylation factor 95.7 0.086 2.9E-06 50.7 12.2 162 77-250 14-186 (187)
35 2h5e_A Peptide chain release f 95.6 0.08 2.7E-06 60.9 13.5 79 122-209 81-161 (529)
36 2dyk_A GTP-binding protein; GT 95.6 0.12 4.3E-06 47.7 12.4 101 82-194 4-120 (161)
37 1zd9_A ADP-ribosylation factor 95.4 0.2 6.9E-06 48.3 13.8 145 79-238 22-181 (188)
38 1upt_A ARL1, ADP-ribosylation 95.3 0.19 6.4E-06 47.0 12.6 137 77-225 5-150 (171)
39 1kao_A RAP2A; GTP-binding prot 95.2 0.16 5.4E-06 47.0 11.7 144 79-237 3-161 (167)
40 2efe_B Small GTP-binding prote 95.1 0.17 5.9E-06 47.8 12.0 149 77-240 10-173 (181)
41 1ega_A Protein (GTP-binding pr 95.1 0.081 2.8E-06 56.2 10.3 147 79-241 8-174 (301)
42 1z06_A RAS-related protein RAB 94.9 0.11 3.7E-06 50.1 10.0 149 78-239 19-185 (189)
43 1z0j_A RAB-22, RAS-related pro 94.7 0.14 4.7E-06 47.8 10.0 146 78-238 5-165 (170)
44 2j69_A Bacterial dynamin-like 94.7 0.25 8.5E-06 58.7 14.1 62 123-194 174-242 (695)
45 1c1y_A RAS-related protein RAP 94.6 0.18 6.3E-06 46.7 10.5 108 79-194 3-120 (167)
46 4dcu_A GTP-binding protein ENG 94.6 0.095 3.3E-06 58.9 9.9 131 76-225 192-350 (456)
47 2xex_A Elongation factor G; GT 94.5 1.4 4.7E-05 52.3 19.9 119 79-209 10-154 (693)
48 2hxs_A RAB-26, RAS-related pro 94.5 0.18 6.1E-06 47.5 10.2 107 76-194 3-127 (178)
49 4bas_A ADP-ribosylation factor 94.5 0.19 6.4E-06 48.5 10.4 136 76-225 14-170 (199)
50 3j25_A Tetracycline resistance 94.4 0.15 5.1E-06 60.0 11.1 82 122-212 66-149 (638)
51 2il1_A RAB12; G-protein, GDP, 94.2 0.23 8E-06 48.0 10.5 103 80-194 27-143 (192)
52 3vqt_A RF-3, peptide chain rel 94.1 0.4 1.4E-05 55.3 13.7 88 112-210 91-180 (548)
53 2fh5_B SR-beta, signal recogni 94.0 0.77 2.6E-05 44.9 14.0 73 78-156 6-90 (214)
54 2b6h_A ADP-ribosylation factor 93.9 0.66 2.3E-05 44.9 13.2 147 77-237 27-186 (192)
55 2ce2_X GTPase HRAS; signaling 93.8 0.5 1.7E-05 43.3 11.6 107 79-194 3-120 (166)
56 3o47_A ADP-ribosylation factor 93.8 0.76 2.6E-05 49.2 14.5 133 80-225 166-308 (329)
57 3lxw_A GTPase IMAP family memb 93.8 0.8 2.7E-05 46.8 14.1 89 76-179 18-131 (247)
58 1r8s_A ADP-ribosylation factor 93.7 1.1 3.7E-05 41.4 13.8 103 82-194 3-113 (164)
59 1r2q_A RAS-related protein RAB 93.7 0.4 1.4E-05 44.4 10.8 143 77-238 4-165 (170)
60 2fg5_A RAB-22B, RAS-related pr 93.7 0.37 1.3E-05 46.6 10.7 141 79-238 23-182 (192)
61 2h57_A ADP-ribosylation factor 93.6 0.7 2.4E-05 44.3 12.7 142 78-236 20-181 (190)
62 2fv8_A H6, RHO-related GTP-bin 93.6 0.43 1.5E-05 46.7 11.2 104 79-194 25-141 (207)
63 3kkq_A RAS-related protein M-R 93.5 0.51 1.8E-05 44.7 11.4 111 76-194 15-135 (183)
64 3lxx_A GTPase IMAP family memb 93.5 0.65 2.2E-05 46.8 12.6 144 77-240 27-212 (239)
65 1z0f_A RAB14, member RAS oncog 93.5 0.75 2.6E-05 43.0 12.3 103 79-194 15-132 (179)
66 4dsu_A GTPase KRAS, isoform 2B 93.3 0.31 1.1E-05 46.2 9.4 109 78-194 3-121 (189)
67 1ek0_A Protein (GTP-binding pr 93.1 0.37 1.3E-05 44.6 9.5 107 79-194 3-120 (170)
68 2erx_A GTP-binding protein DI- 93.1 0.72 2.5E-05 42.7 11.5 103 79-194 3-121 (172)
69 2gco_A H9, RHO-related GTP-bin 93.0 0.61 2.1E-05 45.4 11.3 105 78-194 24-141 (201)
70 2h17_A ADP-ribosylation factor 93.0 0.4 1.4E-05 45.8 9.7 145 77-237 19-178 (181)
71 2fn4_A P23, RAS-related protei 93.0 0.5 1.7E-05 44.4 10.2 109 78-194 8-126 (181)
72 2ged_A SR-beta, signal recogni 93.0 0.2 6.8E-06 48.2 7.5 104 77-194 46-168 (193)
73 1ksh_A ARF-like protein 2; sma 92.9 0.8 2.7E-05 43.5 11.8 103 77-194 16-131 (186)
74 2cxx_A Probable GTP-binding pr 92.9 0.96 3.3E-05 42.9 12.3 96 82-194 4-134 (190)
75 2a9k_A RAS-related protein RAL 92.9 1.2 4E-05 42.0 12.8 105 78-194 17-135 (187)
76 3tw8_B RAS-related protein RAB 92.9 0.27 9.1E-06 46.3 8.1 106 77-194 7-125 (181)
77 1fzq_A ADP-ribosylation factor 92.8 1.8 6.3E-05 41.2 14.2 104 77-194 14-129 (181)
78 1m2o_B GTP-binding protein SAR 92.6 0.56 1.9E-05 45.4 10.3 104 77-194 21-136 (190)
79 1u8z_A RAS-related protein RAL 92.6 1.3 4.6E-05 40.5 12.6 105 78-194 3-121 (168)
80 2e87_A Hypothetical protein PH 92.6 4.3 0.00015 43.7 18.3 106 76-194 164-292 (357)
81 2atv_A RERG, RAS-like estrogen 92.5 0.77 2.6E-05 44.3 11.1 105 78-194 27-144 (196)
82 3t5d_A Septin-7; GTP-binding p 92.3 0.85 2.9E-05 47.2 11.9 82 145-238 116-200 (274)
83 2p5s_A RAS and EF-hand domain 92.3 0.77 2.6E-05 44.5 10.8 104 78-194 27-145 (199)
84 1f6b_A SAR1; gtpases, N-termin 92.2 0.78 2.7E-05 44.7 10.8 104 77-194 23-138 (198)
85 3q85_A GTP-binding protein REM 92.2 0.7 2.4E-05 42.9 10.1 102 81-194 4-121 (169)
86 1g16_A RAS-related protein SEC 92.2 0.49 1.7E-05 43.9 8.9 103 79-194 3-120 (170)
87 2atx_A Small GTP binding prote 92.2 0.92 3.2E-05 43.5 11.2 108 79-194 18-134 (194)
88 1z2a_A RAS-related protein RAB 92.2 2 7E-05 39.5 13.2 106 79-194 5-121 (168)
89 2wjg_A FEOB, ferrous iron tran 92.1 0.77 2.6E-05 43.7 10.4 101 76-194 4-124 (188)
90 3t5g_A GTP-binding protein RHE 92.1 0.82 2.8E-05 43.2 10.6 108 79-194 6-123 (181)
91 1x3s_A RAS-related protein RAB 92.1 0.66 2.3E-05 44.2 10.0 104 78-194 14-133 (195)
92 1nrj_B SR-beta, signal recogni 92.1 1.5 5.1E-05 42.9 12.8 109 77-194 10-132 (218)
93 4gzl_A RAS-related C3 botulinu 92.1 0.47 1.6E-05 46.5 9.0 106 77-194 28-146 (204)
94 4dcu_A GTP-binding protein ENG 92.0 0.39 1.3E-05 53.9 9.4 100 80-194 24-143 (456)
95 2y8e_A RAB-protein 6, GH09086P 92.0 0.9 3.1E-05 42.4 10.7 144 79-238 14-173 (179)
96 2hjg_A GTP-binding protein ENG 92.0 0.92 3.1E-05 50.5 12.3 130 77-225 173-330 (436)
97 2qtf_A Protein HFLX, GTP-bindi 92.0 2.2 7.4E-05 46.5 15.0 104 77-194 178-304 (364)
98 2hjg_A GTP-binding protein ENG 91.9 0.5 1.7E-05 52.7 10.0 99 81-194 5-123 (436)
99 1moz_A ARL1, ADP-ribosylation 91.9 0.45 1.6E-05 45.0 8.4 104 77-194 16-131 (183)
100 2gf9_A RAS-related protein RAB 91.8 0.62 2.1E-05 44.6 9.4 105 78-194 21-139 (189)
101 2qpt_A EH domain-containing pr 91.8 0.5 1.7E-05 54.6 10.1 64 123-194 154-230 (550)
102 2nzj_A GTP-binding protein REM 91.8 0.74 2.5E-05 43.0 9.7 104 78-194 3-123 (175)
103 3tkl_A RAS-related protein RAB 91.7 0.92 3.1E-05 43.3 10.6 104 78-194 15-133 (196)
104 3i8s_A Ferrous iron transport 91.7 0.6 2.1E-05 48.6 9.8 138 79-240 3-167 (274)
105 2x77_A ADP-ribosylation factor 91.7 0.54 1.9E-05 45.0 8.8 104 77-194 20-135 (189)
106 3llu_A RAS-related GTP-binding 91.5 1.7 5.9E-05 41.9 12.3 77 79-156 20-107 (196)
107 2oil_A CATX-8, RAS-related pro 91.5 0.97 3.3E-05 43.3 10.4 105 78-194 24-142 (193)
108 2bov_A RAla, RAS-related prote 91.5 2.9 9.8E-05 40.1 13.9 110 77-194 12-131 (206)
109 1mky_A Probable GTP-binding pr 91.4 1.7 6E-05 48.3 13.7 129 77-225 178-336 (439)
110 1wms_A RAB-9, RAB9, RAS-relate 91.3 1.3 4.5E-05 41.4 10.9 105 78-194 6-128 (177)
111 3dz8_A RAS-related protein RAB 91.3 0.36 1.2E-05 46.5 7.1 105 78-194 22-140 (191)
112 3qq5_A Small GTP-binding prote 91.3 0.93 3.2E-05 50.6 11.3 101 77-194 32-152 (423)
113 3q72_A GTP-binding protein RAD 91.2 0.69 2.4E-05 42.9 8.8 102 81-194 4-118 (166)
114 2xtp_A GTPase IMAP family memb 91.2 0.83 2.8E-05 46.6 10.1 103 77-194 20-151 (260)
115 3p32_A Probable GTPase RV1496/ 91.1 0.69 2.4E-05 50.1 9.9 89 123-225 172-265 (355)
116 3c5c_A RAS-like protein 12; GD 91.1 1 3.6E-05 43.2 10.2 144 78-237 20-181 (187)
117 1vg8_A RAS-related protein RAB 91.1 0.69 2.4E-05 44.7 9.0 106 77-194 6-129 (207)
118 1z08_A RAS-related protein RAB 91.1 0.64 2.2E-05 43.2 8.4 106 76-194 3-123 (170)
119 3a1s_A Iron(II) transport prot 90.9 0.95 3.3E-05 46.7 10.3 100 79-194 5-122 (258)
120 1m7b_A RND3/RHOE small GTP-bin 90.6 1.6 5.4E-05 41.6 10.9 107 76-194 4-123 (184)
121 4fn5_A EF-G 1, elongation fact 90.6 2.3 7.9E-05 50.5 14.5 63 123-194 85-149 (709)
122 1jwy_B Dynamin A GTPase domain 90.5 0.96 3.3E-05 47.3 10.1 62 123-194 131-210 (315)
123 2a5j_A RAS-related protein RAB 90.4 1.3 4.4E-05 42.5 10.2 105 77-194 19-138 (191)
124 1pui_A ENGB, probable GTP-bind 90.3 4.8 0.00016 38.8 14.3 105 76-194 23-149 (210)
125 2j1l_A RHO-related GTP-binding 90.2 1.9 6.4E-05 42.4 11.3 105 78-194 33-150 (214)
126 2o52_A RAS-related protein RAB 90.1 1.1 3.8E-05 43.5 9.5 104 77-194 23-142 (200)
127 2f7s_A C25KG, RAS-related prot 90.1 0.79 2.7E-05 44.9 8.4 103 79-194 25-153 (217)
128 3iby_A Ferrous iron transport 89.9 0.69 2.4E-05 47.7 8.1 135 81-239 3-164 (256)
129 2hup_A RAS-related protein RAB 89.8 2.4 8.1E-05 41.2 11.6 104 79-194 29-146 (201)
130 3lvq_E ARF-GAP with SH3 domain 89.7 1.9 6.4E-05 48.6 12.2 104 79-194 322-435 (497)
131 2yc2_C IFT27, small RAB-relate 89.4 2.2 7.7E-05 40.9 11.0 106 79-194 20-144 (208)
132 4djt_A GTP-binding nuclear pro 89.4 1.8 6.1E-05 42.4 10.4 105 77-194 9-129 (218)
133 3con_A GTPase NRAS; structural 89.4 2.6 9E-05 40.0 11.4 109 78-194 20-138 (190)
134 2q3h_A RAS homolog gene family 89.3 0.76 2.6E-05 44.4 7.5 107 76-194 17-136 (201)
135 2bcg_Y Protein YP2, GTP-bindin 89.3 1.1 3.6E-05 43.6 8.6 104 79-194 8-125 (206)
136 1mky_A Probable GTP-binding pr 89.2 1.6 5.6E-05 48.4 11.2 97 81-194 3-122 (439)
137 2gf0_A GTP-binding protein DI- 89.2 2.6 8.8E-05 40.2 11.2 110 77-194 6-126 (199)
138 3ihw_A Centg3; RAS, centaurin, 89.2 4 0.00014 39.0 12.5 107 76-194 17-131 (184)
139 1zbd_A Rabphilin-3A; G protein 89.1 1.5 5.2E-05 42.3 9.6 103 79-194 8-125 (203)
140 1xzp_A Probable tRNA modificat 88.9 2.1 7.3E-05 48.4 11.8 101 80-194 244-362 (482)
141 1mh1_A RAC1; GTP-binding, GTPa 88.2 0.99 3.4E-05 42.5 7.4 108 79-194 5-121 (186)
142 3cph_A RAS-related protein SEC 88.2 2 6.8E-05 41.6 9.7 104 78-194 19-137 (213)
143 3oes_A GTPase rhebl1; small GT 88.1 1.4 4.9E-05 42.6 8.6 104 78-194 23-141 (201)
144 2g6b_A RAS-related protein RAB 88.1 1.7 5.7E-05 40.7 8.8 105 77-194 8-128 (180)
145 3k53_A Ferrous iron transport 87.5 3.5 0.00012 42.4 11.6 98 79-194 3-121 (271)
146 1h65_A Chloroplast outer envel 87.4 3.4 0.00012 42.5 11.4 106 77-194 37-166 (270)
147 3cpj_B GTP-binding protein YPT 87.0 2.4 8.3E-05 41.8 9.7 103 79-194 13-130 (223)
148 3bwd_D RAC-like GTP-binding pr 86.9 1.1 3.9E-05 42.1 6.9 105 78-194 7-124 (182)
149 2bme_A RAB4A, RAS-related prot 86.9 1.6 5.3E-05 41.3 7.9 104 78-194 9-127 (186)
150 2iwr_A Centaurin gamma 1; ANK 86.5 2.8 9.6E-05 39.2 9.4 107 77-194 5-120 (178)
151 2ew1_A RAS-related protein RAB 86.5 2.2 7.5E-05 41.8 8.9 107 79-194 26-143 (201)
152 4a9a_A Ribosome-interacting GT 86.4 1.6 5.4E-05 48.0 8.5 69 81-156 74-161 (376)
153 2gj8_A MNME, tRNA modification 86.2 5.2 0.00018 37.7 11.2 101 78-194 3-127 (172)
154 2fu5_C RAS-related protein RAB 86.0 1.7 5.9E-05 41.0 7.6 105 78-194 7-125 (183)
155 3bc1_A RAS-related protein RAB 85.7 3.2 0.00011 39.1 9.4 104 78-194 10-139 (195)
156 1gwn_A RHO-related GTP-binding 85.5 4.6 0.00016 39.5 10.8 105 78-194 27-144 (205)
157 1ky3_A GTP-binding protein YPT 85.2 2.3 7.8E-05 39.7 8.0 106 77-194 6-130 (182)
158 3def_A T7I23.11 protein; chlor 85.0 4.2 0.00014 41.6 10.5 105 77-194 34-163 (262)
159 3t34_A Dynamin-related protein 84.7 2.8 9.6E-05 45.1 9.5 65 123-194 136-215 (360)
160 1lnz_A SPO0B-associated GTP-bi 84.5 5.3 0.00018 43.1 11.5 125 82-224 161-310 (342)
161 3t1o_A Gliding protein MGLA; G 84.4 12 0.00042 35.1 13.0 78 78-156 13-109 (198)
162 3gj0_A GTP-binding nuclear pro 84.0 2.9 9.8E-05 41.1 8.5 110 76-194 12-131 (221)
163 3geh_A MNME, tRNA modification 83.6 3.4 0.00012 46.5 9.8 137 79-237 224-379 (462)
164 2www_A Methylmalonic aciduria 83.4 18 0.00062 38.8 15.2 33 124-157 168-200 (349)
165 2j0v_A RAC-like GTP-binding pr 83.0 3.1 0.0001 40.4 8.1 110 77-194 7-125 (212)
166 1n0u_A EF-2, elongation factor 82.8 4.9 0.00017 48.7 11.3 64 122-194 97-162 (842)
167 2x2e_A Dynamin-1; nitration, h 82.7 1.9 6.5E-05 46.4 7.1 62 123-194 130-209 (353)
168 3reg_A RHO-like small GTPase; 82.2 2.2 7.5E-05 40.9 6.6 106 77-194 21-139 (194)
169 3l0i_B RAS-related protein RAB 81.9 2.1 7.2E-05 41.3 6.4 105 77-194 31-150 (199)
170 2wkq_A NPH1-1, RAS-related C3 81.9 6.6 0.00023 40.8 10.8 104 79-194 155-271 (332)
171 3q3j_B RHO-related GTP-binding 81.5 2.3 7.8E-05 41.9 6.6 104 79-194 27-143 (214)
172 3cbq_A GTP-binding protein REM 81.5 15 0.0005 35.3 12.4 104 78-194 22-142 (195)
173 3gee_A MNME, tRNA modification 81.3 11 0.00039 42.3 13.0 99 80-194 234-355 (476)
174 2p67_A LAO/AO transport system 80.6 7.4 0.00025 41.6 10.8 34 123-157 149-182 (341)
175 2aka_B Dynamin-1; fusion prote 80.2 7.5 0.00026 39.9 10.4 62 123-194 125-204 (299)
176 2wji_A Ferrous iron transport 79.6 9.2 0.00031 35.5 9.9 98 79-194 3-120 (165)
177 2j37_W Signal recognition part 77.5 9.4 0.00032 43.5 10.7 29 77-106 99-127 (504)
178 3dpu_A RAB family protein; roc 77.3 6.3 0.00022 44.8 9.4 128 78-225 40-189 (535)
179 3b1v_A Ferrous iron uptake tra 76.6 12 0.0004 38.8 10.5 99 79-194 3-119 (272)
180 2qag_A Septin-2, protein NEDD5 75.9 15 0.0005 39.7 11.4 82 146-239 147-234 (361)
181 3th5_A RAS-related C3 botulinu 73.4 0.88 3E-05 44.2 0.0 104 79-194 30-146 (204)
182 3zvr_A Dynamin-1; hydrolase, D 70.2 11 0.00037 45.2 9.3 43 143-194 186-229 (772)
183 2qag_B Septin-6, protein NEDD5 66.3 6.5 0.00022 43.9 5.9 67 147-226 151-218 (427)
184 1udx_A The GTP-binding protein 63.4 37 0.0013 37.5 11.3 139 81-237 159-320 (416)
185 1tq4_A IIGP1, interferon-induc 62.5 63 0.0021 35.6 12.9 148 78-238 68-249 (413)
186 1sqr_A 50S ribosomal protein L 61.9 7.1 0.00024 34.3 4.0 53 716-768 19-76 (95)
187 4a18_H RPL35A; ribosome, eukar 61.8 12 0.00042 33.8 5.7 65 714-778 30-109 (113)
188 3dm5_A SRP54, signal recogniti 60.3 1.6E+02 0.0055 32.7 15.8 30 77-107 98-127 (443)
189 3r7w_A Gtpase1, GTP-binding pr 58.8 36 0.0012 35.5 9.8 106 79-194 3-127 (307)
190 1wxq_A GTP-binding protein; st 58.7 20 0.00067 39.4 8.0 34 123-157 71-114 (397)
191 2zej_A Dardarin, leucine-rich 58.6 45 0.0015 31.2 9.7 103 80-194 3-124 (184)
192 1hyq_A MIND, cell division inh 56.4 25 0.00084 35.3 7.8 63 124-194 112-174 (263)
193 3kjh_A CO dehydrogenase/acetyl 55.5 15 0.00051 36.2 5.9 63 124-194 133-195 (254)
194 2g3y_A GTP-binding protein GEM 54.5 67 0.0023 31.5 10.5 103 79-194 37-157 (211)
195 4dzz_A Plasmid partitioning pr 50.6 45 0.0015 31.7 8.3 76 124-208 77-156 (206)
196 2f9l_A RAB11B, member RAS onco 47.3 81 0.0028 29.8 9.6 104 79-194 5-122 (199)
197 3j21_c 50S ribosomal protein L 46.9 15 0.0005 31.9 3.5 53 717-769 20-77 (87)
198 1g3q_A MIND ATPase, cell divis 46.6 27 0.00093 34.3 6.1 63 124-194 113-175 (237)
199 3cwq_A Para family chromosome 46.3 42 0.0014 32.8 7.4 75 124-208 69-147 (209)
200 2wsm_A Hydrogenase expression/ 45.9 25 0.00085 34.1 5.6 25 79-104 30-54 (221)
201 1yrb_A ATP(GTP)binding protein 44.7 1.3E+02 0.0045 29.6 11.1 60 124-194 110-183 (262)
202 1jal_A YCHF protein; nucleotid 44.3 37 0.0013 36.8 7.1 73 80-156 3-108 (363)
203 1j8m_F SRP54, signal recogniti 43.1 2.8E+02 0.0096 28.7 13.6 60 124-194 182-251 (297)
204 2v3c_C SRP54, signal recogniti 42.8 57 0.002 36.1 8.5 27 77-104 97-123 (432)
205 3c5h_A Glucocorticoid receptor 42.8 1.6E+02 0.0056 29.4 11.4 46 144-194 162-210 (255)
206 3la6_A Tyrosine-protein kinase 42.8 37 0.0013 35.3 6.7 62 125-194 204-266 (286)
207 2qm8_A GTPase/ATPase; G protei 42.8 38 0.0013 36.1 6.9 27 77-104 53-79 (337)
208 2cjw_A GTP-binding protein GEM 41.5 93 0.0032 29.4 8.9 108 79-194 6-126 (192)
209 3iz5_j 60S ribosomal protein L 41.4 21 0.0007 32.3 3.7 63 716-778 29-107 (111)
210 2yv5_A YJEQ protein; hydrolase 41.0 74 0.0025 33.2 8.7 46 141-194 76-122 (302)
211 4dkx_A RAS-related protein RAB 39.0 1.4E+02 0.0047 29.4 9.9 102 81-194 15-130 (216)
212 2ohf_A Protein OLA1, GTP-bindi 38.7 29 0.00098 38.2 5.2 74 76-155 19-127 (396)
213 3bfv_A CAPA1, CAPB2, membrane 36.1 57 0.002 33.4 6.8 62 124-194 193-256 (271)
214 3ea0_A ATPase, para family; al 33.9 80 0.0027 30.9 7.3 62 124-194 120-184 (245)
215 2dby_A GTP-binding protein; GD 32.8 53 0.0018 35.6 6.1 34 123-156 69-111 (368)
216 3k9g_A PF-32 protein; ssgcid, 32.7 1.4E+02 0.0047 29.8 8.9 75 124-207 146-221 (267)
217 3cio_A ETK, tyrosine-protein k 32.3 88 0.003 32.5 7.5 63 124-194 215-278 (299)
218 3kl4_A SRP54, signal recogniti 31.4 1.3E+02 0.0044 33.4 9.0 30 76-106 94-123 (433)
219 3izc_j 60S ribosomal protein R 30.9 23 0.00078 31.8 2.2 62 717-778 26-103 (107)
220 1wcv_1 SOJ, segregation protei 30.3 1.4E+02 0.0048 29.7 8.5 33 124-156 113-145 (257)
221 3qxc_A Dethiobiotin synthetase 28.9 1.7E+02 0.0058 29.6 8.8 76 136-223 151-227 (242)
222 3qvo_A NMRA family protein; st 28.9 1E+02 0.0035 30.2 7.0 57 123-188 67-123 (236)
223 1oix_A RAS-related protein RAB 28.6 1.5E+02 0.005 27.9 7.9 104 79-194 29-146 (191)
224 2kjq_A DNAA-related protein; s 28.5 1.9E+02 0.0064 26.6 8.4 92 78-194 35-126 (149)
225 2oze_A ORF delta'; para, walke 28.3 1.6E+02 0.0054 29.9 8.6 61 124-194 156-224 (298)
226 2ffh_A Protein (FFH); SRP54, s 25.8 3E+02 0.01 30.2 10.7 28 78-106 97-124 (425)
227 3dm3_A Replication factor A; p 25.6 53 0.0018 29.0 3.7 45 739-783 32-83 (105)
228 3izq_1 HBS1P, elongation facto 25.3 3.8E+02 0.013 30.8 12.0 128 553-696 466-610 (611)
229 1s0u_A EIF-2-gamma, translatio 23.1 6.6E+02 0.023 26.8 12.8 65 612-693 343-407 (408)
230 2qag_C Septin-7; cell cycle, c 23.1 89 0.0031 34.4 5.7 68 145-224 139-207 (418)
231 3q9l_A Septum site-determining 23.0 77 0.0026 31.3 4.9 63 124-194 115-185 (260)
232 1ni3_A YCHF GTPase, YCHF GTP-b 23.0 97 0.0033 33.9 6.0 76 75-155 16-126 (392)
233 3rhi_A DNA-binding protein HU; 20.8 26 0.00088 30.3 0.6 20 283-302 39-58 (93)
234 3ec1_A YQEH GTPase; atnos1, at 20.2 1.7E+02 0.0058 31.3 7.2 96 131-237 57-157 (369)
No 1
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.94 E-value=5.6e-26 Score=259.93 Aligned_cols=167 Identities=14% Similarity=0.183 Sum_probs=136.1
Q ss_pred CcccCCCCCeEEEEeeeeeeeeeeeecc---CCCCCCceEEecccCCCce--EEEEEEeecCCCCccEEEEEeCCC-CCC
Q 003796 610 YDAPIKAKEELIFHVGFRQFVARPIFSS---DNMNSDKHKMERFLHAGCF--SVASIYAPICFPPLPLIVLKSADG-GVA 683 (795)
Q Consensus 610 ~~~~lKSkdpLi~s~GwRRFq~~PifS~---~~~~~~r~k~~ky~~~~~~--~~AtfygPi~~~~t~vl~f~~~~~-~~~ 683 (795)
++.||++..++.|+||..+-.+....-. -|.+ +.+...+++.++.. |...+-.|+++.+.+-++++.... ...
T Consensus 303 ~~~~l~~g~~~~l~~~t~~~~~~v~~~~~~~~d~~-~~~~~~~~l~~g~~~~v~l~~~~pv~~~~~~rfilr~~~~~~~~ 381 (482)
T 1wb1_A 303 FKYNLTPKMKVHLNVGMLIVPAVAVPFKKVTFGKT-EENIILNEVISGNEXYXAFELEEKVLAEVGDRVLITRLDLPPTT 381 (482)
T ss_dssp CCSCCCSSCEEEEEETTEEEEEEEEEEEECCSSSC-CCEEECCSSCCSSCCCEEEEEEEEECCCSSCCCBEECTTSCTTS
T ss_pred CCcccCCCCEEEEEEcccEEEEEEEEEeccccccc-cccccchhhcCCCEEEEEEEcCccEEecCCCeEEEEECCCCccC
Confidence 3589999999999999999887764422 1333 34555677877754 555666999988766666766211 134
Q ss_pred CeEEEEeEEeccCCcceeEEeEEEEeeeeE-----EeeeeEEEeecCCChhhccccccceeeecccc-cceeeCCCCCCc
Q 003796 684 PAVAAVGSLRSIDPDRIILKKIVLTGYPQR-----VSKLKAIVRYMFHNPEDVRWFKPVEVWTKCGR-RGRIKEPVGTHG 757 (795)
Q Consensus 684 ~ri~atG~vl~~d~~r~IvKklkLtG~P~K-----I~K~tA~Ir~MF~n~~dV~~Fk~a~L~TksGi-rG~IK~~lgt~G 757 (795)
.|.+|.|.|+++.+ +|+++|...+.| ++++||+||+||++..|++||+|.+|+|++|. +|+||.|+|++|
T Consensus 382 ~~tvg~G~v~~~~~----~~~l~v~k~~~k~g~v~~~~~~~i~~~lf~~~~~~~~f~g~~v~~~~g~~~G~I~~~fg~~G 457 (482)
T 1wb1_A 382 LRIXGHGLIEEFKP----IKDLNIKKEVLREGKVKIDKGRTVIDGLAQSKVAAEKLIGEEISIEGKDIVGKIKGTFGTKG 457 (482)
T ss_dssp CCCCCBCCEEECCC----GGGSCCCCCCEEEEEEECCSSCCEETTSCSSHHHHHHSCSCCCEETTTCCCBCCCCCBTTTT
T ss_pred ceEeeEEEEEeccc----chhceeeehhhccCcEEEcCCEEEEEcCccchhhhHHhcCcEEEEcCCceEEEEeccCCCCc
Confidence 79999999999977 566666555555 78899999999999999999999999999999 999999999999
Q ss_pred eeEEEeccccccccEEEEecceee
Q 003796 758 AMKCVFNGILQQRDTVCMSLYKRA 781 (795)
Q Consensus 758 ~fka~Fe~~i~~~D~V~m~lykrv 781 (795)
+|||+|+++|.++|+|||++|||+
T Consensus 458 ~~~~~f~~~~~~~d~v~~~~~~~~ 481 (482)
T 1wb1_A 458 LLTAEFSGNVENRDKVILNRLRRW 481 (482)
T ss_dssp BBCCCBSSCCCSSCEEEEECCCSC
T ss_pred eEEEEecCCCCCCCeeeeehhhcc
Confidence 999999999999999999999994
No 2
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=98.72 E-value=5.3e-07 Score=100.48 Aligned_cols=206 Identities=12% Similarity=0.103 Sum_probs=143.5
Q ss_pred CCCCEEEEEecCCCccChhhHHHHHHHhhccCCCCC--c----------------ceEEEe----------cCceeeEEE
Q 003796 76 ASPPRVIVLFGLSASVNLNSVREDLLRQLSSEGTGA--L----------------SSTVSS----------SKYRLRTSV 127 (795)
Q Consensus 76 ~~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~~--g----------------~~tv~~----------~r~k~Ritf 127 (795)
..+++.|+++|.++.++. +| ++.|++..... | .++... ...+++++|
T Consensus 5 ~~~~~~I~vvG~~~~GKS-TL----i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 79 (403)
T 3sjy_A 5 VQPEVNIGVVGHVDHGKT-TL----VQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISF 79 (403)
T ss_dssp CCCCCEEEEECSTTSSHH-HH----HHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEE
T ss_pred cCCCcEEEEECCCCCCHH-HH----HHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEE
Confidence 457788999999998886 77 55554422111 0 111100 112379999
Q ss_pred EeCCC--CChHHHHHHHhhhceEEEeeeCCCcccccccccc-ChHHHHHHHHHHhcCCCceEEEeccCCc-chhhhHHHH
Q 003796 128 LQAPH--GDLVGCMEMAKVADLVAFVASASSFSEESMSYYI-DSFGNQCLSVFRSLGLPSTAVLIRDLPT-DLKKRKDLK 203 (795)
Q Consensus 128 ie~~~--~dl~~~LD~aKvADlVll~idas~g~~~~~~~~f-e~eg~e~L~~l~aqG~P~vigVl~~Ld~-~~Kk~~~~k 203 (795)
+.+|- .-...|+..+..||.+|||+|++.| + ...+.+.|..++..|.+.++.|++..|. +........
T Consensus 80 iDtPGh~~~~~~~~~~~~~~D~~ilVvda~~~--------~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~ 151 (403)
T 3sjy_A 80 IDAPGHEVLMATMLSGAALMDGAILVVAANEP--------FPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQY 151 (403)
T ss_dssp EECCCCGGGHHHHHHHHTTCSEEEEEEETTSC--------SSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHHHH
T ss_pred EECCCcHHHHHHHHHHHhhCCEEEEEEECCCC--------CCcHHHHHHHHHHHHcCCCCEEEEEECccccchHHHHHHH
Confidence 99983 2256788999999999999999965 4 5678999999999999889999999885 212233455
Q ss_pred HHHHhhcccccCCCCeeEEeCC--HHHHHHHHHHHhhccccCcccccCCCeEEEEeeEeccCCC--CCCCceEEEEEEEe
Q 003796 204 KMCISSLTSEFPEDCKFYAADT--KDELHKFLWLFKEQRLTVPHWRNQRPFLMAQKVDVVADDC--NSGKCTLLLHGYLR 279 (795)
Q Consensus 204 K~lk~~f~~ef~~~~Klf~l~~--~~E~~nL~R~Is~~k~r~l~WR~~rpYmLadr~e~~~~~~--~~~~~~l~v~GyvR 279 (795)
+.++.++......+..+|.+|. -..+..|...|...-+.+-...+..+.|.+++.-...... -+..+-.+++|.|.
T Consensus 152 ~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~~~~~~~~~~~~~v~~~~~v~~~~~~~~~~~G~v~~g~v~ 231 (403)
T 3sjy_A 152 RQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIKTPYRDLSQKPVMLVIRSFDVNKPGTQFNELKGGVIGGSII 231 (403)
T ss_dssp HHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCCCCCTTSCCEEEEEEEECCCCTTCCSSSCCCCEEEEEEE
T ss_pred HHHHHHHHhhCCCCCEEEEEECCCCcChHHHHHHHHHhCCCCCCCCCCCcEEEEEEEEeecCCCcccccCcCcEEEEEEE
Confidence 5666666655566788999995 3456778888877666677777888899998865432211 11223356899999
Q ss_pred CCCCCCCCeEEe-CCC
Q 003796 280 AHCLSVNQLVHI-SGA 294 (795)
Q Consensus 280 G~~l~~n~lVHI-pG~ 294 (795)
...+++|..|+| ||.
T Consensus 232 ~G~~~~gd~v~~~p~~ 247 (403)
T 3sjy_A 232 QGLFKVDQEIKVLPGL 247 (403)
T ss_dssp ESCEETTCEEEEEEEE
T ss_pred eCEEecCCEEEEeCCc
Confidence 888999999998 653
No 3
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=98.64 E-value=5.2e-07 Score=100.40 Aligned_cols=210 Identities=13% Similarity=0.074 Sum_probs=144.5
Q ss_pred CCEEEEEecCCCccChhhHHHHHHHhhccC-----------C---CC-CcceEEE-----ecCceeeEEEEeCCCCC---
Q 003796 78 PPRVIVLFGLSASVNLNSVREDLLRQLSSE-----------G---TG-ALSSTVS-----SSKYRLRTSVLQAPHGD--- 134 (795)
Q Consensus 78 pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~-----------~---~~-~g~~tv~-----~~r~k~Ritfie~~~~d--- 134 (795)
|+.-|+|+|..+.++. +|++.|....... + .+ ...+|+. ......+++|+.+| .-
T Consensus 2 ~~~~I~iiG~~~~GKS-TLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtp-G~~~f 79 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKT-TLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCP-GHADY 79 (397)
T ss_dssp CEEEEEEESSTTSSHH-HHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECS-SHHHH
T ss_pred CeEEEEEEeCCCCCHH-HHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECC-ChHHH
Confidence 4567999999987775 6655545432111 0 00 1223432 12224789999998 43
Q ss_pred hHHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcc-hhhh-HHHHHHHHhhccc
Q 003796 135 LVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTD-LKKR-KDLKKMCISSLTS 212 (795)
Q Consensus 135 l~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~~-~Kk~-~~~kK~lk~~f~~ 212 (795)
+..|+..+..||.+|||+|++.| ...++.+.|..++..|+|.++.|++.+|.. ...+ ..++..++.++..
T Consensus 80 ~~~~~~~~~~aD~~ilVvda~~g--------~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~ 151 (397)
T 1d2e_A 80 VKNMITGTAPLDGCILVVAANDG--------PMPQTREHLLLARQIGVEHVVVYVNKADAVQDSEMVELVELEIRELLTE 151 (397)
T ss_dssp HHHHHHTSSCCSEEEEEEETTTC--------SCHHHHHHHHHHHHTTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHhhCCEEEEEEECCCC--------CCHHHHHHHHHHHHcCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHH
Confidence 45678888999999999999965 567889999999999999999999988851 1111 2234444444433
Q ss_pred c-cC-CCCeeEEeCCHH-----------H-HHHHHHHHhhccccCcccccCCCeEEEEeeEeccCCCCCCCceEEEEEEE
Q 003796 213 E-FP-EDCKFYAADTKD-----------E-LHKFLWLFKEQRLTVPHWRNQRPFLMAQKVDVVADDCNSGKCTLLLHGYL 278 (795)
Q Consensus 213 e-f~-~~~Klf~l~~~~-----------E-~~nL~R~Is~~k~r~l~WR~~rpYmLadr~e~~~~~~~~~~~~l~v~Gyv 278 (795)
. +. ....+|+.|..+ . +..|+..|...-+.|..+.+...+|.++++-..+. .-.+++|.|
T Consensus 152 ~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~p~~~~~~p~~~~v~~v~~~~~------~G~v~~g~v 225 (397)
T 1d2e_A 152 FGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPVPTRDLEKPFLLPVESVYSIPG------RGTVVTGTL 225 (397)
T ss_dssp TTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCCCCCCTTSCCEEECCEEEEETT------TEEEEEEEC
T ss_pred cCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCCCCCCCCCCcEEEEEEEEEEeCC------ceEEEEEEE
Confidence 2 21 246788888544 2 78899999887777777777778888888776542 345688999
Q ss_pred eCCCCCCCCeEEeCCCCc---eeeceee
Q 003796 279 RAHCLSVNQLVHISGAGD---FQLGKIE 303 (795)
Q Consensus 279 RG~~l~~n~lVHIpG~GD---fqi~~I~ 303 (795)
....|++|..|++.|.|+ .+|.+|.
T Consensus 226 ~~G~l~~gd~v~~~~~~~~~~~~V~~i~ 253 (397)
T 1d2e_A 226 ERGILKKGDECEFLGHSKNIRTVVTGIE 253 (397)
T ss_dssp CBSEEETTCEEEEEETTEEEEEEEEEEE
T ss_pred eeceEeCCCEEEEeCCCCCeEEEEEEEE
Confidence 999999999999988874 3444443
No 4
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=98.56 E-value=1e-06 Score=98.23 Aligned_cols=160 Identities=14% Similarity=0.133 Sum_probs=117.4
Q ss_pred eeEEEEeCCCCC---hHHHHHHHhhhceEEEeeeCCCcccccccccc-ChHHHHHHHHHHhcCCCceEEEeccCCc-chh
Q 003796 123 LRTSVLQAPHGD---LVGCMEMAKVADLVAFVASASSFSEESMSYYI-DSFGNQCLSVFRSLGLPSTAVLIRDLPT-DLK 197 (795)
Q Consensus 123 ~Ritfie~~~~d---l~~~LD~aKvADlVll~idas~g~~~~~~~~f-e~eg~e~L~~l~aqG~P~vigVl~~Ld~-~~K 197 (795)
.+++|+.+| .. +..|+..+..||.+|||+||+.| + ...+++.|.+++..|++.++.|++.+|. +..
T Consensus 83 ~~i~iiDtP-Gh~~f~~~~~~~~~~~D~~ilVvda~~g--------~~~~qt~e~l~~~~~~~~~~iivviNK~Dl~~~~ 153 (410)
T 1kk1_A 83 RRVSFIDAP-GHEALMTTMLAGASLMDGAILVIAANEP--------CPRPQTREHLMALQIIGQKNIIIAQNKIELVDKE 153 (410)
T ss_dssp EEEEEEECS-SHHHHHHHHHHCGGGCSEEEEEEETTSC--------SSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHH
T ss_pred cEEEEEECC-ChHHHHHHHHhhhhhCCEEEEEEECCCC--------CCChhHHHHHHHHHHcCCCcEEEEEECccCCCHH
Confidence 789999998 43 45678888999999999999964 5 6789999999999999999999999885 212
Q ss_pred hhHHHHHHHHhhcccccCCCCeeEEeCC--HHHHHHHHHHHhhccccCcccccCCCeEEEEeeEeccCCC--CCCCceEE
Q 003796 198 KRKDLKKMCISSLTSEFPEDCKFYAADT--KDELHKFLWLFKEQRLTVPHWRNQRPFLMAQKVDVVADDC--NSGKCTLL 273 (795)
Q Consensus 198 k~~~~kK~lk~~f~~ef~~~~Klf~l~~--~~E~~nL~R~Is~~k~r~l~WR~~rpYmLadr~e~~~~~~--~~~~~~l~ 273 (795)
........++.++......+..+|.+|. ...+..|+..|...-+.|..+.+..+.|.+++.-...... -++..-.+
T Consensus 154 ~~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~p~~~~~~~~~~~v~~~f~v~~~g~~~~~~~G~v 233 (410)
T 1kk1_A 154 KALENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIPTPKRDPNKPPKMLVLRSFDVNKPGTPPEKLVGGV 233 (410)
T ss_dssp HHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCCCCCTTSCCEEEEEEEECCSCCC----CCCCCE
T ss_pred HHHHHHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCCCccccCCCcEEEEEEEEeccCCCccccCCceEE
Confidence 2223445566666655555788999984 3457778888887667777788888889888865432111 01112246
Q ss_pred EEEEEeCCCCCCCCeEEe
Q 003796 274 LHGYLRAHCLSVNQLVHI 291 (795)
Q Consensus 274 v~GyvRG~~l~~n~lVHI 291 (795)
++|.|....|++|..|.+
T Consensus 234 ~~g~v~~G~l~~gd~v~~ 251 (410)
T 1kk1_A 234 LDGSIVQGKLKVGDEIEI 251 (410)
T ss_dssp EEEEEEESCEETTCEEEE
T ss_pred EEEEEEeCeEeeCCEEEE
Confidence 889888888999998887
No 5
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.41 E-value=3.8e-06 Score=93.67 Aligned_cols=161 Identities=12% Similarity=0.125 Sum_probs=111.4
Q ss_pred eeEEEEeCCC-CC-hHHHHHHHhhhceEEEeeeCCCcccccccccc-ChHHHHHHHHHHhcCCCceEEEeccCCc-chhh
Q 003796 123 LRTSVLQAPH-GD-LVGCMEMAKVADLVAFVASASSFSEESMSYYI-DSFGNQCLSVFRSLGLPSTAVLIRDLPT-DLKK 198 (795)
Q Consensus 123 ~Ritfie~~~-~d-l~~~LD~aKvADlVll~idas~g~~~~~~~~f-e~eg~e~L~~l~aqG~P~vigVl~~Ld~-~~Kk 198 (795)
++++|+.+|- .+ ...|+..+..||.+|||+|++.| + ...+++.|.+++..|++.++.|++..|. +...
T Consensus 81 ~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g--------~~~~qt~e~l~~~~~l~~~~iivv~NK~Dl~~~~~ 152 (408)
T 1s0u_A 81 RRVSFVDSPGHETLMATMLSGASLMDGAILVIAANEP--------CPQPQTKEHLMALEILGIDKIIIVQNKIDLVDEKQ 152 (408)
T ss_dssp EEEEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSC--------SSCHHHHHHHHHHHHTTCCCEEEEEECTTSSCTTT
T ss_pred cEEEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCC--------CCCchhHHHHHHHHHcCCCeEEEEEEccCCCCHHH
Confidence 7899999983 12 34567778889999999999954 5 6789999999999999999999999885 2111
Q ss_pred hHHHHHHHHhhcccccCCCCeeEEeCC--HHHHHHHHHHHhhccccCcccccCCCeEEEEeeEeccCCCC--CCCceEEE
Q 003796 199 RKDLKKMCISSLTSEFPEDCKFYAADT--KDELHKFLWLFKEQRLTVPHWRNQRPFLMAQKVDVVADDCN--SGKCTLLL 274 (795)
Q Consensus 199 ~~~~kK~lk~~f~~ef~~~~Klf~l~~--~~E~~nL~R~Is~~k~r~l~WR~~rpYmLadr~e~~~~~~~--~~~~~l~v 274 (795)
.......++.++......+..+|++|. -..+..|...|...-+.|-.+.+..+.|.+++.-.+..... +..+-.++
T Consensus 153 ~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~~~~~~~~~~~~~v~~~f~v~~~g~~~~~~~G~v~ 232 (408)
T 1s0u_A 153 AEENYEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIPTPKRDPDATPRMYVARSFDINKPGTEIKDLKGGVL 232 (408)
T ss_dssp TTTHHHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSCCCCCCTTSCCEEEEEEEECCCCSSCCGGGCCCCEE
T ss_pred HHHHHHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCCCCcccCCCCeEEEEEEEEeecCCCcccccCceeEE
Confidence 112333444444443344678999885 34467788888776666777778888888887643321110 01123478
Q ss_pred EEEEeCCCCCCCCeEEe
Q 003796 275 HGYLRAHCLSVNQLVHI 291 (795)
Q Consensus 275 ~GyvRG~~l~~n~lVHI 291 (795)
+|.|....|++|..|++
T Consensus 233 ~g~v~~G~l~~gd~v~~ 249 (408)
T 1s0u_A 233 GGAIIQGVFKVGDEIEI 249 (408)
T ss_dssp EEEEEESCEETTCEEEE
T ss_pred EEEEEECeEecCCEEEE
Confidence 99999989999999988
No 6
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=98.39 E-value=1.5e-05 Score=88.81 Aligned_cols=215 Identities=13% Similarity=0.073 Sum_probs=139.1
Q ss_pred CCCCEEEEEecCCCccChhhHHHHHHHhhccCC------------CC----C-c----ceEEEecCceeeEEEEeCCC-C
Q 003796 76 ASPPRVIVLFGLSASVNLNSVREDLLRQLSSEG------------TG----A-L----SSTVSSSKYRLRTSVLQAPH-G 133 (795)
Q Consensus 76 ~~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~------------~~----~-g----~~tv~~~r~k~Ritfie~~~-~ 133 (795)
..+.+-|+|+|.++.++. +|++.|...+.... .. . | ...+.......+++|+.+|- .
T Consensus 8 ~~~~~~I~iiG~~~~GKS-TLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~ 86 (405)
T 2c78_A 8 TKPHVNVGTIGHVDHGKT-TLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHA 86 (405)
T ss_dssp -CCEEEEEEECSTTSSHH-HHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSG
T ss_pred CCCeEEEEEEcCCCCCHH-HHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChH
Confidence 345677999999987775 66555555321111 00 0 1 11222222247899999973 2
Q ss_pred C-hHHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcc-hhhh-HHHHHHHHhhc
Q 003796 134 D-LVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTD-LKKR-KDLKKMCISSL 210 (795)
Q Consensus 134 d-l~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~~-~Kk~-~~~kK~lk~~f 210 (795)
+ ...|+..+..||.+|||+|++.| ....+.+.|..+...|+|.++.|++.+|.. .... ..++..++.++
T Consensus 87 ~f~~~~~~~~~~aD~~ilVvda~~g--------~~~qt~~~l~~~~~~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l 158 (405)
T 2c78_A 87 DYIKNMITGAAQMDGAILVVSAADG--------PMPQTREHILLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLL 158 (405)
T ss_dssp GGHHHHHHHHTTCSSEEEEEETTTC--------CCHHHHHHHHHHHHTTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCC--------CcHHHHHHHHHHHHcCCCEEEEEEECccccCcHHHHHHHHHHHHHHH
Confidence 3 45788889999999999999965 556789999999999999999999988851 1111 22344444444
Q ss_pred ccccC--CCCeeEEeCCHHH--------------------HHHHHHHHhhccccCcccccCCCeEEEEeeEeccCCCCCC
Q 003796 211 TSEFP--EDCKFYAADTKDE--------------------LHKFLWLFKEQRLTVPHWRNQRPFLMAQKVDVVADDCNSG 268 (795)
Q Consensus 211 ~~ef~--~~~Klf~l~~~~E--------------------~~nL~R~Is~~k~r~l~WR~~rpYmLadr~e~~~~~~~~~ 268 (795)
...-. ....+|..|..+. +..|+..|...-+.|..--+...-|.++++-..+.
T Consensus 159 ~~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp~p~~~~~~p~~~~v~~v~~~~~----- 233 (405)
T 2c78_A 159 NQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITG----- 233 (405)
T ss_dssp HHTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSCCCCCCCSSCCEEECCEEEEETT-----
T ss_pred HHhcccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcCCCCCCCCCCcEEEEEEEEEcCC-----
Confidence 33211 2467888884322 66788888775554543333344455666554432
Q ss_pred CceEEEEEEEeCCCCCCCCeEEeCCCCc----eeeceeecc
Q 003796 269 KCTLLLHGYLRAHCLSVNQLVHISGAGD----FQLGKIEIL 305 (795)
Q Consensus 269 ~~~l~v~GyvRG~~l~~n~lVHIpG~GD----fqi~~I~~~ 305 (795)
.-.+++|.|....|++|..|.+.+.|+ .+|.+|...
T Consensus 234 -~G~v~~g~v~~G~l~~gd~v~~~~~~~~~~~~~V~~i~~~ 273 (405)
T 2c78_A 234 -RGTVATGRIERGKVKVGDEVEIVGLAPETRKTVVTGVEMH 273 (405)
T ss_dssp -TEEEEEEECCBSEEETTCEEEEESSSSSCEEEEEEEEEET
T ss_pred -CceEEEEEEecccccCCCEEEEeCCCCCeeeEEEEEEEEC
Confidence 345678999999999999999988884 677777643
No 7
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=98.28 E-value=1.6e-05 Score=98.22 Aligned_cols=218 Identities=12% Similarity=0.114 Sum_probs=144.3
Q ss_pred CCCCEEEEEecCCCccChhhHHHHHHHhhcc-----------CC---CC-CcceEEE-----ecCceeeEEEEeCCCCC-
Q 003796 76 ASPPRVIVLFGLSASVNLNSVREDLLRQLSS-----------EG---TG-ALSSTVS-----SSKYRLRTSVLQAPHGD- 134 (795)
Q Consensus 76 ~~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~-----------~~---~~-~g~~tv~-----~~r~k~Ritfie~~~~d- 134 (795)
..+.+-|+|+|..+.++. +|++.|...... .+ .+ ..-+|+. ....+.+++|+.+| .-
T Consensus 293 ~k~~lnIvIIGhvDvGKS-TLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTP-GHe 370 (1289)
T 3avx_A 293 TKPHVNVGTIGHVDHGKT-TLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCP-GHA 370 (1289)
T ss_dssp CCCEEEEEEEESTTSSHH-HHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECC-CHH
T ss_pred cCCeeEEEEEcCCCCCHH-HHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECC-ChH
Confidence 456677999999987765 565554543210 01 00 1122221 12235789999998 43
Q ss_pred --hHHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc-chhhh-HHHHHHHHhhc
Q 003796 135 --LVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT-DLKKR-KDLKKMCISSL 210 (795)
Q Consensus 135 --l~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~-~~Kk~-~~~kK~lk~~f 210 (795)
+..|+..++.||.+|||+|++.| ...++.+.|..++..|+|.+|.|++.+|. +...+ ..++..++.++
T Consensus 371 dF~~~mi~gas~AD~aILVVDAtdG--------v~~QTrEhL~ll~~lgIP~IIVVINKiDLv~d~e~le~i~eEi~elL 442 (1289)
T 3avx_A 371 DYVKNMITGAAQMDGAILVVAATDG--------PMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELL 442 (1289)
T ss_dssp HHHHHHHHTSCCCSEEEEEEETTTC--------SCTTHHHHHHHHHHHTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCEEEEEEcCCcc--------CcHHHHHHHHHHHHcCCCeEEEEEeecccccchhhHHHHHHHHHHHH
Confidence 34577778899999999999965 45578889999999999999999999886 11111 22344444444
Q ss_pred ccc-c-CCCCeeEEeCCHH----------HHHHHHHHHhhccccCcccccCCCeEEEEeeEeccCCCCCCCceEEEEEEE
Q 003796 211 TSE-F-PEDCKFYAADTKD----------ELHKFLWLFKEQRLTVPHWRNQRPFLMAQKVDVVADDCNSGKCTLLLHGYL 278 (795)
Q Consensus 211 ~~e-f-~~~~Klf~l~~~~----------E~~nL~R~Is~~k~r~l~WR~~rpYmLadr~e~~~~~~~~~~~~l~v~Gyv 278 (795)
... + +....++++|..+ .+..|+..|...-+.|....+....|.++++-.++. .-.+++|.|
T Consensus 443 k~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip~P~r~~d~Pfr~pId~Vf~i~G------~GtVvtGrV 516 (1289)
T 3avx_A 443 SQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISG------RGTVVTGRV 516 (1289)
T ss_dssp HHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSCCCCCGGGSCCEEECCEEEEETT------TEEEEEEEC
T ss_pred HhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcCCCccccccceeeeccccccccC------CcEEEEEEE
Confidence 332 2 1246788888543 377888888876666655545555666777665432 345688999
Q ss_pred eCCCCCCCCeEEeCCCCc---eeeceeeccCCCC
Q 003796 279 RAHCLSVNQLVHISGAGD---FQLGKIEILKDPF 309 (795)
Q Consensus 279 RG~~l~~n~lVHIpG~GD---fqi~~I~~~~dP~ 309 (795)
....|++|..|+|.|.|+ .+|.+|.....|+
T Consensus 517 ~sGtLkvGD~V~I~ps~~~~~~kVksI~~~~~~v 550 (1289)
T 3avx_A 517 ERGIIKVGEEVEIVGIKETQKSTCTGVEMFRKLL 550 (1289)
T ss_dssp CBSEEETTCEEEEESSSSCEEEEEEEEECSSCEE
T ss_pred eccEEecCCEEEEecCCCceeEEEEEEeecCcee
Confidence 999999999999999985 6888887665443
No 8
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=98.15 E-value=2.8e-06 Score=99.35 Aligned_cols=173 Identities=16% Similarity=0.170 Sum_probs=106.6
Q ss_pred eeeEEEEeCCCCC---hHHHHHHHhhhceEEEeeeCCCcccccccccc--ChHHHHHHHHHHhcCCCceEEEeccCCc-c
Q 003796 122 RLRTSVLQAPHGD---LVGCMEMAKVADLVAFVASASSFSEESMSYYI--DSFGNQCLSVFRSLGLPSTAVLIRDLPT-D 195 (795)
Q Consensus 122 k~Ritfie~~~~d---l~~~LD~aKvADlVll~idas~g~~~~~~~~f--e~eg~e~L~~l~aqG~P~vigVl~~Ld~-~ 195 (795)
.++++|+.+| .- +..|+..+..||++|||+|++.|. .+.+| ...+.+.+.++...|+|.+|.|++.+|. +
T Consensus 254 ~~~i~iiDTP-Gh~~f~~~~~~~~~~aD~alLVVDa~~g~---~e~gi~~~~qt~e~l~~~~~lgip~iIvviNKiDl~~ 329 (592)
T 3mca_A 254 KKIYEIGDAP-GHRDFISGMIAGASSADFAVLVVDSSQNN---FERGFLENGQTREHAYLLRALGISEIVVSVNKLDLMS 329 (592)
T ss_dssp -----CCEEE-SSSEEEEECCC-------CCSEEEEEECC---SSTTSCSCSSHHHHHHHHHHSSCCCEEEEEECGGGGT
T ss_pred CeEEEEEECC-ChHHHHHHHHHHHhhCCEEEEEEECCCCc---cccccccchHHHHHHHHHHHcCCCeEEEEEecccccc
Confidence 3678888887 42 456778889999999999998651 01246 7789999999999999999999999885 1
Q ss_pred --hhhhHHHHHHHHhhc-ccc-c-CCCCeeEEeCCHHH--H--------------HHHHHHHhhccccCcccccCCCeEE
Q 003796 196 --LKKRKDLKKMCISSL-TSE-F-PEDCKFYAADTKDE--L--------------HKFLWLFKEQRLTVPHWRNQRPFLM 254 (795)
Q Consensus 196 --~Kk~~~~kK~lk~~f-~~e-f-~~~~Klf~l~~~~E--~--------------~nL~R~Is~~k~r~l~WR~~rpYmL 254 (795)
......+++.++.++ ... + +.+..++++|..+- + ..|+..|....+ |-...+....|.
T Consensus 330 ~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~p-p~~~~~~p~r~~ 408 (592)
T 3mca_A 330 WSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLVP-PEKPYRKPLRLS 408 (592)
T ss_dssp TCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSCC-CSCTTTSCCEEE
T ss_pred ccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHhhcc-ccccccccchhe
Confidence 112234666677666 221 1 12346888873111 1 146666665544 333334445566
Q ss_pred EEeeEeccCCCCCCCceEEEEEEEeCCCCCCCCeEEeCCCC-ceeeceeeccC
Q 003796 255 AQKVDVVADDCNSGKCTLLLHGYLRAHCLSVNQLVHISGAG-DFQLGKIEILK 306 (795)
Q Consensus 255 adr~e~~~~~~~~~~~~l~v~GyvRG~~l~~n~lVHIpG~G-Dfqi~~I~~~~ 306 (795)
++++-.. . +...++|.|....|++|..|+|.+.| ...|.+|..-.
T Consensus 409 v~~v~~~-~------~g~v~~G~v~~G~l~~Gd~v~i~p~~~~~~V~~i~~~~ 454 (592)
T 3mca_A 409 IDDVYRS-P------RSVTVTGRVEAGNVQVNQVLYDVSSQEDAYVKNVIRNS 454 (592)
T ss_dssp EEEEEEE-T------TEEEEEEEEEESEEETTCEEEETTTTEEEEEEEEECSS
T ss_pred eeEEEec-C------CeEEEEEEEeeeeEccCCEEEEccCCceEEEEEEEEcC
Confidence 7776543 2 35678999998889999999996665 56777777543
No 9
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=97.67 E-value=0.00044 Score=76.23 Aligned_cols=201 Identities=12% Similarity=0.135 Sum_probs=125.1
Q ss_pred EEEEecCCCccChhhHHHHHHHhhccCCCCC--cceEEEecCceeeEEEEeCCC-CC-hHHHHHHHhhhceEEEeeeCCC
Q 003796 81 VIVLFGLSASVNLNSVREDLLRQLSSEGTGA--LSSTVSSSKYRLRTSVLQAPH-GD-LVGCMEMAKVADLVAFVASASS 156 (795)
Q Consensus 81 iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~~--g~~tv~~~r~k~Ritfie~~~-~d-l~~~LD~aKvADlVll~idas~ 156 (795)
.|+++|.++.++. +| +..|+....+. +...+... +.+++|+.+|- .+ +..|+..++.||.+|||+| ..
T Consensus 23 ~i~iiG~~d~GKS-TL----~~~L~~~giTi~~~~~~~~~~--~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~~ 94 (370)
T 2elf_A 23 NVAIIGTEKSGRT-SL----AANLGKKGTSSDITMYNNDKE--GRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-PQ 94 (370)
T ss_dssp EEEEEESTTSSHH-HH----HHTTSEEEEESSSEEEEECSS--SSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-TT
T ss_pred EEEEECCCCCCHH-HH----HHHHHhCCEEEEeeEEEEecC--CeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-CC
Confidence 7999999998875 67 66665332221 33333333 46799999973 23 5688999999999999999 75
Q ss_pred ccccccccccChHHHHHHHHHHhcCCCceEEEec-cCCcchhh-hHHHHHHHHhhcccccCCCCeeEE--eCCHH-----
Q 003796 157 FSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIR-DLPTDLKK-RKDLKKMCISSLTSEFPEDCKFYA--ADTKD----- 227 (795)
Q Consensus 157 g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~-~Ld~~~Kk-~~~~kK~lk~~f~~ef~~~~Klf~--l~~~~----- 227 (795)
| ...++.+.+..++..|+|.+|.|++ .+|. ... ...+...++.++...-.....+|+ .|..+
T Consensus 95 g--------~~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~ 165 (370)
T 2elf_A 95 G--------LDAHTGECIIALDLLGFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFE 165 (370)
T ss_dssp C--------CCHHHHHHHHHHHHTTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTT
T ss_pred C--------CcHHHHHHHHHHHHcCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCC
Confidence 4 6778999999999999999888888 7776 222 233455666666543334568888 77543
Q ss_pred HHHHHHHHHhhccccC--cc---cccCCCeEEEEeeEeccCCCCCCCceEEEEEEEeCCCCCCCCeEEeCCCC-ceeece
Q 003796 228 ELHKFLWLFKEQRLTV--PH---WRNQRPFLMAQKVDVVADDCNSGKCTLLLHGYLRAHCLSVNQLVHISGAG-DFQLGK 301 (795)
Q Consensus 228 E~~nL~R~Is~~k~r~--l~---WR~~rpYmLadr~e~~~~~~~~~~~~l~v~GyvRG~~l~~n~lVHIpG~G-Dfqi~~ 301 (795)
-+..|...|...-+.+ .. .+ .-..++++++-.++. .|+ .++|.|....+++|..|.+...| ...|.+
T Consensus 166 gi~~L~~~l~~~~~~~~~~~~~~~~-~p~r~~v~~vf~~~~-----~G~-v~~g~v~~G~l~~gd~v~~~p~~~~~~V~~ 238 (370)
T 2elf_A 166 GVDELKARINEVAEKIEAENAELNS-LPARIFIDHAFNVTG-----KGC-VVLGVVKQGISKDKDKTKIFPLDRDIEIRS 238 (370)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHGGG-SCCEEEEEEEECCC--------C-EEEEEEEESEEETTCEEEEETTTEEEEEEE
T ss_pred CHHHHHHHHHhhccccccCCccccc-ccccccceeEEEcCC-----Cce-EEEEEEECCEEeeCCEEEECCCCcEEEEeE
Confidence 2334444443322211 00 00 001334555443321 344 56787777779999998876655 556666
Q ss_pred eecc
Q 003796 302 IEIL 305 (795)
Q Consensus 302 I~~~ 305 (795)
|...
T Consensus 239 i~~~ 242 (370)
T 2elf_A 239 IQSH 242 (370)
T ss_dssp EEET
T ss_pred EEEC
Confidence 6543
No 10
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=97.57 E-value=0.0025 Score=71.45 Aligned_cols=170 Identities=11% Similarity=0.095 Sum_probs=105.8
Q ss_pred eeeEEEEeCCC-CC-hHHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc-ch-h
Q 003796 122 RLRTSVLQAPH-GD-LVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT-DL-K 197 (795)
Q Consensus 122 k~Ritfie~~~-~d-l~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~-~~-K 197 (795)
..+++|+.+|- .+ ...|+..+..||.+|||+|++.| +...+.+.|.++...|+|.++.|++..|. +. .
T Consensus 103 ~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g--------~~~qt~~~l~~~~~~~~~~iIvviNK~Dl~~~~~ 174 (434)
T 1zun_B 103 KRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYG--------VQTQTRRHSYIASLLGIKHIVVAINKMDLNGFDE 174 (434)
T ss_dssp SEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTC--------SCHHHHHHHHHHHHTTCCEEEEEEECTTTTTSCH
T ss_pred CceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCC--------CcHHHHHHHHHHHHcCCCeEEEEEEcCcCCcccH
Confidence 46899999973 23 35678889999999999999965 55678889999999999999999999986 11 1
Q ss_pred h-hHHHHHHHHhhccccc--CCCCeeEEeCCHHH--HH------------HHHHHHhhccccCcccccCCCeEEEEeeEe
Q 003796 198 K-RKDLKKMCISSLTSEF--PEDCKFYAADTKDE--LH------------KFLWLFKEQRLTVPHWRNQRPFLMAQKVDV 260 (795)
Q Consensus 198 k-~~~~kK~lk~~f~~ef--~~~~Klf~l~~~~E--~~------------nL~R~Is~~k~r~l~WR~~rpYmLadr~e~ 260 (795)
. ...++..++.++...- .....++.+|..+. +. .|...|.... .|-.-.+....|.++.+..
T Consensus 175 ~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~~~~w~~g~~L~~~l~~i~-~~~~~~~~~~~~~v~~v~~ 253 (434)
T 1zun_B 175 RVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSERSPWYAGQSLMEILETVE-IASDRNYTDLRFPVQYVNR 253 (434)
T ss_dssp HHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCTTCTTCCSCCTTHHHHHSC-CTTCCCSSSCEEECCEEEC
T ss_pred HHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccccccCccccCchHHHHHhcCC-CcccCCCCCcEEEEEEEec
Confidence 1 1234455555443321 22467788773211 10 0333333332 2222223333444444432
Q ss_pred ccCCCCCCCceEEEEEEEeCCCCCCCCeEEeCCCC-ceeeceeeccC
Q 003796 261 VADDCNSGKCTLLLHGYLRAHCLSVNQLVHISGAG-DFQLGKIEILK 306 (795)
Q Consensus 261 ~~~~~~~~~~~l~v~GyvRG~~l~~n~lVHIpG~G-Dfqi~~I~~~~ 306 (795)
.. ..+.. +.|.|....|++|..|.+.+.| ...|.+|....
T Consensus 254 ~~-----~~~~g-~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~ 294 (434)
T 1zun_B 254 PN-----LNFRG-FAGTLASGIVHKGDEIVVLPSGKSSRVKSIVTFE 294 (434)
T ss_dssp SS-----SSCCE-EEEECCBSCEETTCEEEETTTCCEEEEEEEEETT
T ss_pred cC-----CCceE-EEEEEecceEeCCCEEEEecCCeEEEEEEEEEcC
Confidence 11 11222 6798988889999999997766 56777776543
No 11
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=97.55 E-value=0.0019 Score=73.14 Aligned_cols=173 Identities=13% Similarity=0.085 Sum_probs=107.2
Q ss_pred eeeEEEEeCCC-CC-hHHHHHHHhhhceEEEeeeCCCccccccccccC--hHHHHHHHHHHhcCCCceEEEeccCCcc-h
Q 003796 122 RLRTSVLQAPH-GD-LVGCMEMAKVADLVAFVASASSFSEESMSYYID--SFGNQCLSVFRSLGLPSTAVLIRDLPTD-L 196 (795)
Q Consensus 122 k~Ritfie~~~-~d-l~~~LD~aKvADlVll~idas~g~~~~~~~~fe--~eg~e~L~~l~aqG~P~vigVl~~Ld~~-~ 196 (795)
+.+++|+.+|- .+ ...|+..+.-||.+|||+|++.|. + +..|+ ..+.+.+..+...|+|.++.|++.+|.. +
T Consensus 84 ~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~-~--~~sf~~~~qt~~~~~~~~~~~v~~iivviNK~Dl~~~ 160 (458)
T 1f60_A 84 KYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGE-F--EAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSVKW 160 (458)
T ss_dssp SEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHH-H--HHHTCTTSHHHHHHHHHHHTTCCEEEEEEECGGGGTT
T ss_pred CceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCc-c--ccccCcchhHHHHHHHHHHcCCCeEEEEEEccccccC
Confidence 46899999973 33 345778889999999999998541 0 01232 2677888888899999999999998861 1
Q ss_pred -hh-hHHHHHHHHhhcccccC--CCCeeEEeCCH-----HH---------------------HHHHHHHHhhccccCccc
Q 003796 197 -KK-RKDLKKMCISSLTSEFP--EDCKFYAADTK-----DE---------------------LHKFLWLFKEQRLTVPHW 246 (795)
Q Consensus 197 -Kk-~~~~kK~lk~~f~~ef~--~~~Klf~l~~~-----~E---------------------~~nL~R~Is~~k~r~l~W 246 (795)
.. ...++..++.++...-. ....++++|.. .+ ...|+..|-... -|-.-
T Consensus 161 ~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~~~~~~~~~~~~~~~~tg~~~~~~Ll~~l~~~~-~p~~~ 239 (458)
T 1f60_A 161 DESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEATTNAPWYKGWEKETKAGVVKGKTLLEAIDAIE-QPSRP 239 (458)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBCCSSCTTCCCEEEECSSSEEEESSHHHHHHTSC-CCCCC
T ss_pred CHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccccccCchhhcccccccccccchHHHHHHhhccC-CCccc
Confidence 11 12344555544433211 13567776631 00 113555555432 22222
Q ss_pred ccCCCeEEEEeeEeccCCCCCCCceEEEEEEEeCCCCCCCCeEEeCCCC-ceeeceeec
Q 003796 247 RNQRPFLMAQKVDVVADDCNSGKCTLLLHGYLRAHCLSVNQLVHISGAG-DFQLGKIEI 304 (795)
Q Consensus 247 R~~rpYmLadr~e~~~~~~~~~~~~l~v~GyvRG~~l~~n~lVHIpG~G-Dfqi~~I~~ 304 (795)
.+....|.++++-..+. .| .+++|.|...-+++|..|.+...| ...|.+|..
T Consensus 240 ~~~p~r~~i~~v~~~~g-----~G-~v~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~ 292 (458)
T 1f60_A 240 TDKPLRLPLQDVYKIGG-----IG-TVPVGRVETGVIKPGMVVTFAPAGVTTEVKSVEM 292 (458)
T ss_dssp TTSCCEEEEEEEEEETT-----TE-EEEEEECCBSCBCTTCEEEEETTTEEEEEEEEEE
T ss_pred CCCCcEEEEEEEEEeCC-----Cc-EEEEEEEeCCeEcCCCEEEECCCCceEEEeEEEE
Confidence 33444566666655432 24 578999999999999999976555 566666664
No 12
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=97.43 E-value=0.0018 Score=75.99 Aligned_cols=178 Identities=13% Similarity=0.211 Sum_probs=107.8
Q ss_pred eeeEEEEeCCCCC---hHHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc-ch-
Q 003796 122 RLRTSVLQAPHGD---LVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT-DL- 196 (795)
Q Consensus 122 k~Ritfie~~~~d---l~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~-~~- 196 (795)
..+++|+.+| .- +..|+..++-||++|||+|++.|. .+..-.+...+.+.+..+...|+|.+|.|++.+|. +.
T Consensus 244 ~~~~~iiDTP-G~e~f~~~~~~~~~~aD~~llVVDa~~g~-~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~~ 321 (611)
T 3izq_1 244 RANFTIVDAP-GHRDFVPNAIMGISQADMAILCVDCSTNA-FESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWS 321 (611)
T ss_dssp SCEEEEEECC-SSSCHHHHHTTTSSCCSEEEEEEECSHHH-HHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTTTC
T ss_pred CceEEEEECC-CCcccHHHHHHHHhhcCceEEEEECCCCc-ccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccchh
Confidence 4689999997 43 566788889999999999998641 00000124588999999999999999999999995 11
Q ss_pred -hhhHHHHHHHHhhccccc--CCCCeeEEeCCH-----HHHH------------HHHHHHhhc---ccc-CcccccCCCe
Q 003796 197 -KKRKDLKKMCISSLTSEF--PEDCKFYAADTK-----DELH------------KFLWLFKEQ---RLT-VPHWRNQRPF 252 (795)
Q Consensus 197 -Kk~~~~kK~lk~~f~~ef--~~~~Klf~l~~~-----~E~~------------nL~R~Is~~---k~r-~l~WR~~rpY 252 (795)
.....+++.++.++...= +.+..+|.+|.. .+.. .|+..|-.. -+. +.......|.
T Consensus 322 ~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el~~~~~~~~Wy~g~~L~~~L~~l~~~~p~~~p~~~~~~p~ 401 (611)
T 3izq_1 322 QQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKENEGINKDDPF 401 (611)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSCTTSCTTCCSCCSCCHHHHHTTSCCCCCCSSSCCSCCSCC
T ss_pred HHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCccccCccccccccccCCcHHHHHHHHhhcccccCcccccccch
Confidence 112345666666554321 124678888731 1110 234444333 111 1222334443
Q ss_pred -EEEEeeEeccCCCCCCCceEEEEEEEeCCCCCCCCeEEeCCCC-ceeeceeec
Q 003796 253 -LMAQKVDVVADDCNSGKCTLLLHGYLRAHCLSVNQLVHISGAG-DFQLGKIEI 304 (795)
Q Consensus 253 -mLadr~e~~~~~~~~~~~~l~v~GyvRG~~l~~n~lVHIpG~G-Dfqi~~I~~ 304 (795)
|.++++-.... ....+ .+++|.|....+++|..|.+...| -..|.+|..
T Consensus 402 r~~V~~v~~~~~--~~g~g-~v~~G~V~~G~lk~Gd~v~~~p~~~~~~VksI~~ 452 (611)
T 3izq_1 402 LFSVLEIIPSKK--TSNDL-ALVSGKLESGSIQPGESLTIYPSEQSCIVDKIQV 452 (611)
T ss_dssp EEECCEEECCSS--SCSSS-SEEEEEEEESEECTTCEEEETTTTEEEEEEEEEC
T ss_pred hhheeeeeccCc--cCCCe-eEEEEEEEeceeccCCEEEEecCCceEEEEEEEE
Confidence 44555443211 00123 457899888889999999986655 345555543
No 13
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=97.40 E-value=0.006 Score=68.55 Aligned_cols=170 Identities=16% Similarity=0.141 Sum_probs=107.9
Q ss_pred eeeEEEEeCCC--CChHHHHHHHhhhceEEEeeeCCCccccccccccC--hHHHHHHHHHHhcCCCceEEEeccCCc---
Q 003796 122 RLRTSVLQAPH--GDLVGCMEMAKVADLVAFVASASSFSEESMSYYID--SFGNQCLSVFRSLGLPSTAVLIRDLPT--- 194 (795)
Q Consensus 122 k~Ritfie~~~--~dl~~~LD~aKvADlVll~idas~g~~~~~~~~fe--~eg~e~L~~l~aqG~P~vigVl~~Ld~--- 194 (795)
+++++|+.+|- .-+..|+..+.-||++|||+||+.|. ++ .+|+ ..+.+.|..+...|+|.++.|++.+|.
T Consensus 94 ~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~-~e--~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl~~~ 170 (439)
T 3j2k_7 94 KKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGE-FE--TGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTV 170 (439)
T ss_pred CeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCc-cc--cccCCCchHHHHHHHHHHcCCCeEEEEeecCCCccc
Confidence 46899999973 22567888899999999999999761 11 1243 578999999999999999999998885
Q ss_pred ch--hhhHHHHHHHHhhcccc-cC--CCCeeEEeCC-----HHHHHH---------HHHHHhhccccCcccccCCC-eEE
Q 003796 195 DL--KKRKDLKKMCISSLTSE-FP--EDCKFYAADT-----KDELHK---------FLWLFKEQRLTVPHWRNQRP-FLM 254 (795)
Q Consensus 195 ~~--Kk~~~~kK~lk~~f~~e-f~--~~~Klf~l~~-----~~E~~n---------L~R~Is~~k~r~l~WR~~rp-YmL 254 (795)
++ .....+++.+..++... +. .+..++++|. -.+... |+..|....+ +-. ....| .|.
T Consensus 171 ~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~~~~w~~g~~L~~~l~~i~~-~~~-~~~~p~r~~ 248 (439)
T 3j2k_7 171 NWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSDFCPWYIGLPFIPYLDNLPN-FNR-SVDGPIRLP 248 (439)
T ss_pred chHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccccccccCchHHHHHHHhCCC-Ccc-CCCCCeEEE
Confidence 11 12234555565555332 11 1456888773 233222 5555555332 222 22333 344
Q ss_pred EEeeEeccCCCCCCCceEEEEEEEeCCCCCCCCeEEeCCCC-ceeeceeec
Q 003796 255 AQKVDVVADDCNSGKCTLLLHGYLRAHCLSVNQLVHISGAG-DFQLGKIEI 304 (795)
Q Consensus 255 adr~e~~~~~~~~~~~~l~v~GyvRG~~l~~n~lVHIpG~G-Dfqi~~I~~ 304 (795)
++++ +. ..| ..++|.|....+++|..|.+...| ...|.+|..
T Consensus 249 v~~~-~~------~~G-~v~~G~v~~G~l~~Gd~v~~~p~~~~~~V~~i~~ 291 (439)
T 3j2k_7 249 IVDK-YK------DMG-TVVLGKLESGSIFKGQQLVMMPNKHNVEVLGILS 291 (439)
T ss_pred EEEE-Ec------CCC-eEEEEEEEeeEEecCCEEEEccCCceEEEEEEEE
Confidence 4443 21 134 468899988889999999886555 556666654
No 14
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=97.37 E-value=0.0043 Score=70.53 Aligned_cols=178 Identities=12% Similarity=0.144 Sum_probs=107.9
Q ss_pred eeeEEEEeCCCCC---hHHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc-ch-
Q 003796 122 RLRTSVLQAPHGD---LVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT-DL- 196 (795)
Q Consensus 122 k~Ritfie~~~~d---l~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~-~~- 196 (795)
+.+++|+.+| .- ...|+..+.-||++|||+|++.|.. +..-.+..++.+.+..+...|+|.+|.|++.+|. +.
T Consensus 110 ~~~~~iiDTP-G~~~f~~~~~~~~~~aD~~llVvDa~~g~~-~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl~~~~ 187 (483)
T 3p26_A 110 RANFTIVDAP-GHRDFVPNAIMGISQADMAILCVDCSTNAF-ESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWS 187 (483)
T ss_dssp SCEEEEECCC-CCGGGHHHHHHHHTTCSEEEEEEECCC-------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGGGTTC
T ss_pred CceEEEEECC-CcHHHHHHHHHhhhhCCEEEEEEECCCCcc-ccccchhhhHHHHHHHHHHcCCCcEEEEEECcCcccch
Confidence 5789999997 43 5678888999999999999997510 0001145689999999999999999999999885 11
Q ss_pred -hhhHHHHHHHHhhccccc--CCCCeeEEeCC-----HH---------------HHHHHHHHHhhcccc--CcccccCCC
Q 003796 197 -KKRKDLKKMCISSLTSEF--PEDCKFYAADT-----KD---------------ELHKFLWLFKEQRLT--VPHWRNQRP 251 (795)
Q Consensus 197 -Kk~~~~kK~lk~~f~~ef--~~~~Klf~l~~-----~~---------------E~~nL~R~Is~~k~r--~l~WR~~rp 251 (795)
.....+++.++.++...= +.+..+|.+|. -. .++.++..|...-+. |-.--+.-.
T Consensus 188 ~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el~~~~~~~~wy~g~~L~~~L~~i~~~~~~~~p~~~~~~p~ 267 (483)
T 3p26_A 188 QQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKENEGINKDDPF 267 (483)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSSCCCHHHHHHCCSCCHHHHHHHHHHHHHHHHTTCCSSSCC
T ss_pred HHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccccCcccccccccCCCCHHHHHHHHHhhcccccccccCCCce
Confidence 112335555555543211 12456777772 11 244555555322111 111123333
Q ss_pred eEEEEeeEeccCCCCCCCceEEEEEEEeCCCCCCCCeEEeCCCC-ceeeceeec
Q 003796 252 FLMAQKVDVVADDCNSGKCTLLLHGYLRAHCLSVNQLVHISGAG-DFQLGKIEI 304 (795)
Q Consensus 252 YmLadr~e~~~~~~~~~~~~l~v~GyvRG~~l~~n~lVHIpG~G-Dfqi~~I~~ 304 (795)
.|.++++-.... . ...-..++|.|....+++|..|.+...| ...|.+|..
T Consensus 268 r~~v~~v~~~~~--~-~g~g~v~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~ 318 (483)
T 3p26_A 268 LFSVLEIIPSKK--T-SNDLALVSGKLESGSIQPGESLTIYPSEQSCIVDKIQV 318 (483)
T ss_dssp EEEEEEEEC-----C-CSCCEEEEEEEEESEECTTCEEEEETTTEEEEEEEEEE
T ss_pred EEEEEEEEccCC--c-CCCceEEEEEEecceEccCCEEEEeCCCCeEEEEEEEE
Confidence 455666543221 0 0123568899988889999998876555 455666654
No 15
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=97.16 E-value=0.0053 Score=68.87 Aligned_cols=166 Identities=16% Similarity=0.174 Sum_probs=103.7
Q ss_pred eeeEEEEeCCC-CCh-HHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc-c--h
Q 003796 122 RLRTSVLQAPH-GDL-VGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT-D--L 196 (795)
Q Consensus 122 k~Ritfie~~~-~dl-~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~-~--~ 196 (795)
+.+++|+.+|- .++ ..|+-.+..||.+|||+|++.|.-.+ ...+..++.+.+..+...|+|.++.|++.+|. + +
T Consensus 83 ~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~gsfe~-~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~ 161 (435)
T 1jny_A 83 KYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEA-GMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPY 161 (435)
T ss_dssp SCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHH-HHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTT
T ss_pred CeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCCCcccc-ccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCccc
Confidence 46899999873 343 45788889999999999998641000 00033478899999999999999999998885 1 1
Q ss_pred -hhh-HHHHHHHHhhcccccC--CCCeeEEeCCHH-----HH---------HHHHHHHhhccccCcccccCCCeEEEEee
Q 003796 197 -KKR-KDLKKMCISSLTSEFP--EDCKFYAADTKD-----EL---------HKFLWLFKEQRLTVPHWRNQRPFLMAQKV 258 (795)
Q Consensus 197 -Kk~-~~~kK~lk~~f~~ef~--~~~Klf~l~~~~-----E~---------~nL~R~Is~~k~r~l~WR~~rpYmLadr~ 258 (795)
..+ ..++..++.++...-. ....++.+|..+ |. ..|+..|....+ |..-.+...-|.++++
T Consensus 162 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~~~~~~~g~~Ll~~l~~~~~-p~~~~~~~~~~~v~~v 240 (435)
T 1jny_A 162 DEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSENMKWYNGPTLEEYLDQLEL-PPKPVDKPLRIPIQDV 240 (435)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCSSCTTCCSCCHHHHHTTCCC-CCCGGGSCCBEEEEEE
T ss_pred cHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCccccccccccccccchhHHHHHhccCC-CCCCCCCCeEEEEEEE
Confidence 111 3445556655543221 236778777421 11 146666655433 3322233344555655
Q ss_pred EeccCCCCCCCceEEEEEEEeCCCCCCCCeEEeCCCC
Q 003796 259 DVVADDCNSGKCTLLLHGYLRAHCLSVNQLVHISGAG 295 (795)
Q Consensus 259 e~~~~~~~~~~~~l~v~GyvRG~~l~~n~lVHIpG~G 295 (795)
-.++. .| ..++|.|....|++|..|.+...|
T Consensus 241 ~~~~~-----~G-~v~~g~v~~G~l~~gd~v~~~p~~ 271 (435)
T 1jny_A 241 YSISG-----VG-TVPVGRVESGVLKVGDKIVFMPAG 271 (435)
T ss_dssp EEETT-----TE-EEEEEECCBSCEETTCEEEEETTT
T ss_pred EEeCC-----Cc-EEEEEEEecCeEEcCCEEEECCce
Confidence 44432 23 567899998889999998876544
No 16
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=97.15 E-value=0.029 Score=65.55 Aligned_cols=166 Identities=8% Similarity=-0.024 Sum_probs=109.9
Q ss_pred eeeEEEEeCCC-CCh-HHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchhhh
Q 003796 122 RLRTSVLQAPH-GDL-VGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKKR 199 (795)
Q Consensus 122 k~Ritfie~~~-~dl-~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~~~Kk~ 199 (795)
..+++|+.+|- .|+ ..+.-.+..||.+|||+||+.| ....+.+.+..+..+|+| +|.|++.+|......
T Consensus 72 ~~~inliDTPGh~dF~~ev~r~l~~aD~aILVVDa~~g--------v~~qt~~~~~~a~~~~ip-iIvviNKiDl~~a~~ 142 (600)
T 2ywe_A 72 TYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQG--------IEAQTVANFWKAVEQDLV-IIPVINKIDLPSADV 142 (600)
T ss_dssp EEEEEEECCCCSGGGHHHHHHHHHTCSEEEEEEETTTB--------CCHHHHHHHHHHHHTTCE-EEEEEECTTSTTCCH
T ss_pred eEEEEEEECCCcHhHHHHHHHHHHhCCEEEEEEECCCC--------ccHHHHHHHHHHHHCCCC-EEEEEeccCccccCH
Confidence 36888999873 233 3466778999999999999965 677888888888899999 788899888511222
Q ss_pred HHHHHHHHhhcccccCCCCeeEEeCCH--HHHHHHHHHHhhccccCcccccCCCeEEEEeeEeccCCCCCCCceEEEEEE
Q 003796 200 KDLKKMCISSLTSEFPEDCKFYAADTK--DELHKFLWLFKEQRLTVPHWRNQRPFLMAQKVDVVADDCNSGKCTLLLHGY 277 (795)
Q Consensus 200 ~~~kK~lk~~f~~ef~~~~Klf~l~~~--~E~~nL~R~Is~~k~r~l~WR~~rpYmLadr~e~~~~~~~~~~~~l~v~Gy 277 (795)
..+.+.+...+.. . ...+|..|.. ..+..|+..|...-+.|..=.+...-+++-...+.+ .+-..++|-
T Consensus 143 ~~v~~el~~~lg~--~-~~~vi~vSAktg~GI~~Lle~I~~~lp~p~~~~~~pl~~lV~~~~~d~------~~G~v~~~r 213 (600)
T 2ywe_A 143 DRVKKQIEEVLGL--D-PEEAILASAKEGIGIEEILEAIVNRIPPPKGDPQKPLKALIFDSYYDP------YRGAVAFVR 213 (600)
T ss_dssp HHHHHHHHHTSCC--C-GGGCEECBTTTTBSHHHHHHHHHHHSCCCCCCTTSCCEEEEEEEEEET------TTEEEEEEE
T ss_pred HHHHHHHHHhhCC--C-cccEEEEEeecCCCchHHHHHHHHhcccccccccCCcceeEEEEeecc------cceEEEEEE
Confidence 3455556555421 1 1347787742 345667777766655554322223334555545443 245677888
Q ss_pred EeCCCCCCCCeEEeCCCC-ceeeceeecc
Q 003796 278 LRAHCLSVNQLVHISGAG-DFQLGKIEIL 305 (795)
Q Consensus 278 vRG~~l~~n~lVHIpG~G-Dfqi~~I~~~ 305 (795)
|....|++|+.|.+..-| .+.+.+|...
T Consensus 214 V~sG~l~~Gd~I~~~~~~~~~~v~~i~~~ 242 (600)
T 2ywe_A 214 IFDGEVKPGDKIMLMSTGKEYEVTEVGAQ 242 (600)
T ss_dssp EEESEECTTCEEEETTTTEEEECCEEEEE
T ss_pred EEeCEEecCCEEEeccccceEeeeccccc
Confidence 887889999999887655 5677777654
No 17
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=97.06 E-value=0.0045 Score=66.16 Aligned_cols=147 Identities=13% Similarity=0.091 Sum_probs=88.9
Q ss_pred CCCCCEEEEEecCCCccChhhHHHHHHHhhccCCCC---C------cceEEEecCc-eeeEEEEeCCCCCh---------
Q 003796 75 IASPPRVIVLFGLSASVNLNSVREDLLRQLSSEGTG---A------LSSTVSSSKY-RLRTSVLQAPHGDL--------- 135 (795)
Q Consensus 75 ~~~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~---~------g~~tv~~~r~-k~Ritfie~~~~dl--------- 135 (795)
..+||-.|+|+|.++.+.+ +| +..|.+.... . ..+......- ...+.|+..| .-.
T Consensus 6 ~~~~~g~v~ivG~~nvGKS-TL----in~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTP-G~~~~~~~~~l~ 79 (308)
T 3iev_A 6 HHMKVGYVAIVGKPNVGKS-TL----LNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTP-GIYEPKKSDVLG 79 (308)
T ss_dssp -CCEEEEEEEECSTTSSHH-HH----HHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECC-CCCCCCTTCHHH
T ss_pred CCCCCCEEEEECCCCCcHH-HH----HHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECc-CCCccccchhHH
Confidence 4577888999999998876 77 4444333221 1 1222111111 4678899887 431
Q ss_pred ----HHHHHHHhhhceEEEeeeCCCccccccccccChHHHHH-HHHHHhcCCCceEEEeccCCcc-hhh-hHHHHHHHHh
Q 003796 136 ----VGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQC-LSVFRSLGLPSTAVLIRDLPTD-LKK-RKDLKKMCIS 208 (795)
Q Consensus 136 ----~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~-L~~l~aqG~P~vigVl~~Ld~~-~Kk-~~~~kK~lk~ 208 (795)
..+...++-||+||+|+|++.+ +.....++ +..|+..+.| ++.|++..|.. .+. .....+.+..
T Consensus 80 ~~~~~~~~~~l~~aD~il~VvD~~~~--------~~~~~~~~~~~~l~~~~~p-vilV~NK~Dl~~~~~~~~~~~~~l~~ 150 (308)
T 3iev_A 80 HSMVEIAKQSLEEADVILFMIDATEG--------WRPRDEEIYQNFIKPLNKP-VIVVINKIDKIGPAKNVLPLIDEIHK 150 (308)
T ss_dssp HHHHHHHHHHHHHCSEEEEEEETTTB--------SCHHHHHHHHHHTGGGCCC-EEEEEECGGGSSSGGGGHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCEEEEEEeCCCC--------CCchhHHHHHHHHHhcCCC-EEEEEECccCCCCHHHHHHHHHHHHH
Confidence 2456778899999999999954 55556677 8889888887 56677877751 121 2233344443
Q ss_pred hcccccCCCCeeEEeCC--HHHHHHHHHHHhhcc
Q 003796 209 SLTSEFPEDCKFYAADT--KDELHKFLWLFKEQR 240 (795)
Q Consensus 209 ~f~~ef~~~~Klf~l~~--~~E~~nL~R~Is~~k 240 (795)
.+ +....+|.+|. ...+..|...|...-
T Consensus 151 ~~----~~~~~i~~vSA~~g~gv~~L~~~l~~~l 180 (308)
T 3iev_A 151 KH----PELTEIVPISALKGANLDELVKTILKYL 180 (308)
T ss_dssp HC----TTCCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred hc----cCCCeEEEEeCCCCCCHHHHHHHHHHhC
Confidence 33 23467888874 233555555555443
No 18
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=97.05 E-value=0.0025 Score=72.20 Aligned_cols=172 Identities=16% Similarity=0.116 Sum_probs=100.7
Q ss_pred eeeEEEEeCCC-CC-hHHHHHHHhhhceEEEeeeCCCccccccccccC--hHHHHHHHHHHhcCCCceEEEeccCCcc--
Q 003796 122 RLRTSVLQAPH-GD-LVGCMEMAKVADLVAFVASASSFSEESMSYYID--SFGNQCLSVFRSLGLPSTAVLIRDLPTD-- 195 (795)
Q Consensus 122 k~Ritfie~~~-~d-l~~~LD~aKvADlVll~idas~g~~~~~~~~fe--~eg~e~L~~l~aqG~P~vigVl~~Ld~~-- 195 (795)
+++++|+.+|- .+ ...|+..+..||.+|||+|++.|. ++ ..|+ ..+.+.|..+...|+|.+|.|++.+|..
T Consensus 120 ~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~-~e--~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~ 196 (467)
T 1r5b_A 120 HRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGE-FE--AGFERGGQTREHAVLARTQGINHLVVVINKMDEPSV 196 (467)
T ss_dssp SEEEEECCCCC-----------TTSCSEEEEEEECSTTH-HH--HTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTC
T ss_pred CeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCc-cc--cccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCc
Confidence 47899999973 23 345778889999999999999762 10 1244 4688889999999999999999998851
Q ss_pred -h-hh-hHHHHHHHHhhcccc--cC--CCCeeEEeCC-----HHHHH-----------HHHHHHhhccccCcccccCCCe
Q 003796 196 -L-KK-RKDLKKMCISSLTSE--FP--EDCKFYAADT-----KDELH-----------KFLWLFKEQRLTVPHWRNQRPF 252 (795)
Q Consensus 196 -~-Kk-~~~~kK~lk~~f~~e--f~--~~~Klf~l~~-----~~E~~-----------nL~R~Is~~k~r~l~WR~~rpY 252 (795)
+ .. ...+...++.++... +. .+..++++|. -.+.. .|+..|....+ |-.-.+....
T Consensus 197 ~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~~~~~~~w~~g~~L~~~l~~i~~-~~~~~~~p~~ 275 (467)
T 1r5b_A 197 QWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVDSSVCPWYQGPSLLEYLDSMTH-LERKVNAPFI 275 (467)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCCTTTCSSCCSCCHHHHHHHCCC-CHHHHTSCCE
T ss_pred cccHHHHHHHHHHHHHHHHHhcCCCccCCceEEecccccccccccccccccCccccchhHHHHHHhCCC-CcCCCCCCcE
Confidence 1 11 233444455444332 11 1345666663 11111 14445544322 1111123334
Q ss_pred EEEEeeEeccCCCCCCCceEEEEEEEeCCCCCCCCeEEeCCCC-ceeeceeecc
Q 003796 253 LMAQKVDVVADDCNSGKCTLLLHGYLRAHCLSVNQLVHISGAG-DFQLGKIEIL 305 (795)
Q Consensus 253 mLadr~e~~~~~~~~~~~~l~v~GyvRG~~l~~n~lVHIpG~G-Dfqi~~I~~~ 305 (795)
|.++++ +. ..| .+++|.|....|++|..|.+.+.| ...|.+|...
T Consensus 276 ~~v~~~-~~------~~G-~v~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~ 321 (467)
T 1r5b_A 276 MPIASK-YK------DLG-TILEGKIEAGSIKKNSNVLVMPINQTLEVTAIYDE 321 (467)
T ss_dssp EECCEE-EE------SSS-EEEEEECCBSEEETTEEEEEETTTEEEEEEEEECT
T ss_pred EEEEEE-Ee------CCC-eEEEEEEeeeEEeeCCEEEEccCCeeEEEEEEecc
Confidence 445554 22 134 589999999999999999985555 5677777653
No 19
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=96.94 E-value=0.07 Score=62.30 Aligned_cols=166 Identities=7% Similarity=-0.006 Sum_probs=109.2
Q ss_pred eeeEEEEeCCC-CCh-HHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchhhh
Q 003796 122 RLRTSVLQAPH-GDL-VGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKKR 199 (795)
Q Consensus 122 k~Ritfie~~~-~dl-~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~~~Kk~ 199 (795)
..+++|+.+|- .|+ ..+...++.||.+|||+|++.| ....+.+.+..+..+|+| +|.|++.+|......
T Consensus 70 ~~~l~liDTPGh~dF~~ev~~~l~~aD~aILVVDa~~g--------v~~qt~~~~~~~~~~~ip-iIvViNKiDl~~a~~ 140 (599)
T 3cb4_D 70 TYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQG--------VEAQTLANCYTAMEMDLE-VVPVLNKIDLPAADP 140 (599)
T ss_dssp EEEEEEEECCCCGGGHHHHHHHHHHCSEEEEEEETTTC--------CCTHHHHHHHHHHHTTCE-EEEEEECTTSTTCCH
T ss_pred eEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCC--------CCHHHHHHHHHHHHCCCC-EEEeeeccCcccccH
Confidence 36889999873 233 3466778999999999999965 667788888888899998 778899888511222
Q ss_pred HHHHHHHHhhcccccCCCCeeEEeCCH--HHHHHHHHHHhhccccCcccccCCCeEEEEeeEeccCCCCCCCceEEEEEE
Q 003796 200 KDLKKMCISSLTSEFPEDCKFYAADTK--DELHKFLWLFKEQRLTVPHWRNQRPFLMAQKVDVVADDCNSGKCTLLLHGY 277 (795)
Q Consensus 200 ~~~kK~lk~~f~~ef~~~~Klf~l~~~--~E~~nL~R~Is~~k~r~l~WR~~rpYmLadr~e~~~~~~~~~~~~l~v~Gy 277 (795)
..+.+.+...|.. . ...+|..|.. ..+..|+..|...-+.|..-.+...-+++-...+.+ ..-..++|-
T Consensus 141 ~~v~~ei~~~lg~--~-~~~vi~vSAktg~GI~~Ll~~I~~~lp~p~~~~~~p~~alI~d~~~d~------~~G~v~~~r 211 (599)
T 3cb4_D 141 ERVAEEIEDIVGI--D-ATDAVRCSAKTGVGVQDVLERLVRDIPPPEGDPEGPLQALIIDSWFDN------YLGVVSLIR 211 (599)
T ss_dssp HHHHHHHHHHTCC--C-CTTCEEECTTTCTTHHHHHHHHHHHSCCCCCCTTSCCEEEEEEEEEET------TTEEEEEEE
T ss_pred HHHHHHHHHHhCC--C-cceEEEeecccCCCchhHHHHHhhcCCCccccccCCceeeeeeccccc------cccEEEEEE
Confidence 3455556555422 1 2357888842 345667777766666554322222234554444433 234567777
Q ss_pred EeCCCCCCCCeEEeCCCC-ceeeceeecc
Q 003796 278 LRAHCLSVNQLVHISGAG-DFQLGKIEIL 305 (795)
Q Consensus 278 vRG~~l~~n~lVHIpG~G-Dfqi~~I~~~ 305 (795)
|-...|++|..|.+..-| .+.+.+|..+
T Consensus 212 V~sG~l~~Gd~v~~~~~~~~~~v~~i~~~ 240 (599)
T 3cb4_D 212 IKNGTLRKGDKVKVMSTGQTYNADRLGIF 240 (599)
T ss_dssp EEESCEESSCEEEETTTCCEEECCEEEEE
T ss_pred EEeCEEecCCEEEeccccceeEEeeeeec
Confidence 777779999998887655 4577887654
No 20
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=96.94 E-value=0.0026 Score=74.38 Aligned_cols=209 Identities=8% Similarity=0.115 Sum_probs=116.7
Q ss_pred CEEEEEecCCCccChhhHHHHHHHhhccCCC----C--CcceEEEec-----------Cc-----eeeEEEEeCCC-CCh
Q 003796 79 PRVIVLFGLSASVNLNSVREDLLRQLSSEGT----G--ALSSTVSSS-----------KY-----RLRTSVLQAPH-GDL 135 (795)
Q Consensus 79 P~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~----~--~g~~tv~~~-----------r~-----k~Ritfie~~~-~dl 135 (795)
|..|+|+|..+.+.+ +|++.|+........ + .|...+... .. ...++|+.+|- .++
T Consensus 5 ~~~V~IvGh~d~GKT-TLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F 83 (594)
T 1g7s_A 5 SPIVSVLGHVDHGKT-TLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF 83 (594)
T ss_dssp CCEEEEECSTTSSHH-HHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred CcEEEEECCCCCcHH-HHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence 457999999998876 675554443211111 1 133333211 00 01489999873 344
Q ss_pred HHHHH-HHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc--chh-------------hh
Q 003796 136 VGCME-MAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT--DLK-------------KR 199 (795)
Q Consensus 136 ~~~LD-~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~--~~K-------------k~ 199 (795)
.++.. .+..||.+|||+|++.| +...+++.|+.++..|+| ++.|++.+|. .+. ..
T Consensus 84 ~~~~~r~~~~aD~aILVvDa~~G--------v~~qT~e~l~~l~~~~vP-iIVViNKiDl~~~~~~~~~~~~~e~sa~~~ 154 (594)
T 1g7s_A 84 TTLRKRGGALADLAILIVDINEG--------FKPQTQEALNILRMYRTP-FVVAANKIDRIHGWRVHEGRPFMETFSKQD 154 (594)
T ss_dssp TTSBCSSSBSCSEEEEEEETTTC--------CCHHHHHHHHHHHHTTCC-EEEEEECGGGSTTCCCCTTCCHHHHHTTSC
T ss_pred HHHHHHHHhhCCEEEEEEECCCC--------ccHhHHHHHHHHHHcCCe-EEEEecccccccccccccCCchHHHHHHhH
Confidence 44443 35789999999999965 888999999999999999 5666776664 111 00
Q ss_pred HHHH-----------HHHH-hhcccc-------cCCCCeeEEeCCH--HHHHHHHHHHhhccccC----cccc-cCCCeE
Q 003796 200 KDLK-----------KMCI-SSLTSE-------FPEDCKFYAADTK--DELHKFLWLFKEQRLTV----PHWR-NQRPFL 253 (795)
Q Consensus 200 ~~~k-----------K~lk-~~f~~e-------f~~~~Klf~l~~~--~E~~nL~R~Is~~k~r~----l~WR-~~rpYm 253 (795)
..++ ..|. ..|..+ +.....+|..|.. .-+..|+..|...-+.+ +..- +...-+
T Consensus 155 ~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~~~~~~l~~~~~~p~~~ 234 (594)
T 1g7s_A 155 IQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQYLREQLKIEEDSPARG 234 (594)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHHCSGGGEECTTSBCEE
T ss_pred HHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhccccchhhhccccCCCcee
Confidence 1111 1221 122211 1223467888742 22344444444332222 2222 223344
Q ss_pred EEEeeEeccCCCCCCCceEEEEEEEeCCCCCCCCeEEeCCCCc-e--eeceee
Q 003796 254 MAQKVDVVADDCNSGKCTLLLHGYLRAHCLSVNQLVHISGAGD-F--QLGKIE 303 (795)
Q Consensus 254 Ladr~e~~~~~~~~~~~~l~v~GyvRG~~l~~n~lVHIpG~GD-f--qi~~I~ 303 (795)
++..+...+ ..-..++|-|....|++|..|.+.+.|. + .|.+|.
T Consensus 235 ~V~~~~~d~------g~G~v~~~rV~~G~Lk~Gd~v~~~~~~~~~~~rV~~i~ 281 (594)
T 1g7s_A 235 TILEVKEET------GLGMTIDAVIYDGILRKDDTIAMMTSKDVISTRIRSLL 281 (594)
T ss_dssp EEEEEEEET------TEEEEEEEEEEESEEETTCEEEEEBSSSEEEEECCEEE
T ss_pred EEEEEEEeC------CcEEEEEEEEeeCEEeeCCEEEECCCCCceeEEEeEEE
Confidence 555554432 2245678888877799999998877654 4 444443
No 21
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=96.86 E-value=0.0011 Score=76.44 Aligned_cols=206 Identities=11% Similarity=0.078 Sum_probs=111.5
Q ss_pred CEEEEEecCCCccChhhHHHHHHHhh-ccCCC---C--CcceEEEecCceeeEEEEeCCC-CChHH-HHHHHhhhceEEE
Q 003796 79 PRVIVLFGLSASVNLNSVREDLLRQL-SSEGT---G--ALSSTVSSSKYRLRTSVLQAPH-GDLVG-CMEMAKVADLVAF 150 (795)
Q Consensus 79 P~iV~Vvg~~~~~~~~sl~~~lvk~~-~~~~~---~--~g~~tv~~~r~k~Ritfie~~~-~dl~~-~LD~aKvADlVll 150 (795)
|..|+|+|.++.+.+ +|++.|...- ..... + .+..++..+. ..+++|+.+|- .++.. +...++.||++||
T Consensus 4 ~pkV~IvG~~~vGKT-SLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~-g~~i~~iDTPGhe~f~~~~~~~~~~aD~vIL 81 (537)
T 3izy_P 4 SPVVTIMGHVDHGKT-TLLDKLRKTQVAAMEAGGITQHIGAFLVSLPS-GEKITFLDTPGHAAFSAMRARGTQVTDIVIL 81 (537)
T ss_dssp CCBCEEEESTTTTHH-HHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSC-SSCCBCEECSSSCCTTTSBBSSSBSBSSCEE
T ss_pred CCEEEEECCCCCCHH-HHHHHHhCCCcccccCCceeEEEeEEEEEeCC-CCEEEEEECCChHHHHHHHHHHHccCCEEEE
Confidence 445899999988775 6744333221 11111 1 1333333321 35899999873 23443 3346788999999
Q ss_pred eeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchhhhHHHHHHHHhh--cccccCCCCeeEEeCC---
Q 003796 151 VASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKKRKDLKKMCISS--LTSEFPEDCKFYAADT--- 225 (795)
Q Consensus 151 ~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~~~Kk~~~~kK~lk~~--f~~ef~~~~Klf~l~~--- 225 (795)
|+|++.| ....+.+.|..+...|+| ++.|++.+|........++..+..+ +...+.....+|.+|.
T Consensus 82 VVDa~dg--------~~~qt~e~l~~~~~~~vP-iIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG 152 (537)
T 3izy_P 82 VVAADDG--------VMKQTVESIQHAKDAHVP-IVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTG 152 (537)
T ss_dssp ECBSSSC--------CCHHHHHHHHHHHTTTCC-EEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSS
T ss_pred EEECCCC--------ccHHHHHHHHHHHHcCCc-EEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCC
Confidence 9999965 667899999999999999 7777887774101111122222221 1223333456777773
Q ss_pred --HHHHHHHHHHHhhccccCcccccCCCeEEEEeeEeccCCCCCCCceEEEEEEEeCCCCCCCCeEEeCCCCceeeceee
Q 003796 226 --KDELHKFLWLFKEQRLTVPHWRNQRPFLMAQKVDVVADDCNSGKCTLLLHGYLRAHCLSVNQLVHISGAGDFQLGKIE 303 (795)
Q Consensus 226 --~~E~~nL~R~Is~~k~r~l~WR~~rpYmLadr~e~~~~~~~~~~~~l~v~GyvRG~~l~~n~lVHIpG~GDfqi~~I~ 303 (795)
-.++...+-.+.... .+-.-.+....+.+++..... ..| ..++|-|....|++|..| ++|----.|..|.
T Consensus 153 ~GI~eLle~I~~l~~~~-~~~~~~~~~~~~~V~e~~~~~-----g~G-~V~~g~V~~G~l~~Gd~v-~~g~~~~kVr~i~ 224 (537)
T 3izy_P 153 ENMMALAEATIALAEML-ELKADPTGAVEGTVIESFTDK-----GRG-PVTTAIIQRGTLRKGSIL-VAGKSWAKVRLMF 224 (537)
T ss_dssp CSSHHHHHHHHHHHTTC-CCCCCSSSSEEEEEEEECCCT-----TCC-CCEEEEEEEECCSSEEEE-CCSSCCEEEEEEE
T ss_pred CCchhHHHHHHHhhhcc-cccCCCCCCcceeEEEEEEeC-----CCc-eEEEEEEecCEEEcCCEE-EeCCceEEEEEEE
Confidence 344443333322211 111111233344455544322 123 356676666668988877 5653223455444
No 22
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=96.84 E-value=0.002 Score=73.82 Aligned_cols=197 Identities=13% Similarity=0.059 Sum_probs=109.5
Q ss_pred CEEEEEecCCCccChhhHHHHHHHhh-ccCC---CC--CcceEEEecCceeeEEEEeCCC-CChHH-HHHHHhhhceEEE
Q 003796 79 PRVIVLFGLSASVNLNSVREDLLRQL-SSEG---TG--ALSSTVSSSKYRLRTSVLQAPH-GDLVG-CMEMAKVADLVAF 150 (795)
Q Consensus 79 P~iV~Vvg~~~~~~~~sl~~~lvk~~-~~~~---~~--~g~~tv~~~r~k~Ritfie~~~-~dl~~-~LD~aKvADlVll 150 (795)
|..|+|+|..+.+.+ +|++.|.+.- .... .+ .+..++..+ ..+++|+.+|- .++.+ +.-.+..||++||
T Consensus 4 ~~~V~IvGhvd~GKT-TLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~--~~~i~~iDTPGhe~f~~~~~~~~~~aD~aIL 80 (501)
T 1zo1_I 4 APVVTIMGHVDHGKT-SLLEYIRSTKVASGEAGGITQHIGAYHVETE--NGMITFLDTPGHAAFTSMRARGAQATDIVVL 80 (501)
T ss_dssp CCCEEEEESTTSSSH-HHHHHHHHHHHSBTTBCCCCCCSSCCCCCTT--SSCCCEECCCTTTCCTTSBCSSSBSCSSEEE
T ss_pred CeEEEEECCCCCCHH-HHHHHHHcCCCccccCCCeeEeEEEEEEEEC--CEEEEEEECCCcHHHHHHHHHHHhhCCEEEE
Confidence 556899999998886 6744444321 1110 01 133333333 35899999873 23333 3445789999999
Q ss_pred eeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchhhhHHHHHHHHh--hcccccCCCCeeEEeCCH--
Q 003796 151 VASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKKRKDLKKMCIS--SLTSEFPEDCKFYAADTK-- 226 (795)
Q Consensus 151 ~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~~~Kk~~~~kK~lk~--~f~~ef~~~~Klf~l~~~-- 226 (795)
++|++.| +...+.+.|..++..|+| ++.|++.+|........++..+.. .+...+.....+|..|..
T Consensus 81 VVda~~g--------~~~qT~e~l~~~~~~~vP-iIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG 151 (501)
T 1zo1_I 81 VVAADDG--------VMPQTIEAIQHAKAAQVP-VVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAG 151 (501)
T ss_dssp EEETTTB--------SCTTTHHHHHHHHHTTCC-EEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTC
T ss_pred EeecccC--------ccHHHHHHHHHHHhcCce-EEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeec
Confidence 9999865 566788999999999999 788888888510111111111111 111222223578888842
Q ss_pred HHHHHHHHHHhhccc-cCcccccCCC-eEEEEeeEeccCCCCCCCceEEEEEEEeCCCCCCCCeEEeCC
Q 003796 227 DELHKFLWLFKEQRL-TVPHWRNQRP-FLMAQKVDVVADDCNSGKCTLLLHGYLRAHCLSVNQLVHISG 293 (795)
Q Consensus 227 ~E~~nL~R~Is~~k~-r~l~WR~~rp-YmLadr~e~~~~~~~~~~~~l~v~GyvRG~~l~~n~lVHIpG 293 (795)
..+..|+..|..+.. ..+.-...+| -+++.+.-..+ ..-..++|.|....|++|..|-+++
T Consensus 152 ~gI~eLle~I~~~~~~~~~~~~~~~~~~~~V~e~~~d~------g~G~v~~~~V~~Gtlk~Gd~v~~g~ 214 (501)
T 1zo1_I 152 TGIDELLDAILLQAEVLELKAVRKGMASGAVIESFLDK------GRGPVATVLVREGTLHKGDIVLCGF 214 (501)
T ss_dssp TTCTTHHHHTTTTCCCSTTTSCCCSBCEEEEEEEEECS------SSSEEEEEEEEESBCCTTCEEEEEB
T ss_pred cCcchhhhhhhhhhhhhccccccccccccceEEEEEeC------CcEEEEEEEEEeeEEecCCEEEEcc
Confidence 234455556654311 1111111222 33444433221 2235677877666699988776643
No 23
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=96.83 E-value=0.01 Score=59.02 Aligned_cols=146 Identities=12% Similarity=0.106 Sum_probs=86.5
Q ss_pred CEEEEEecCCCccChhhHHHHHHHhhccCC---CCC-------cceEEEec-CceeeEEEEeCCCCC-------------
Q 003796 79 PRVIVLFGLSASVNLNSVREDLLRQLSSEG---TGA-------LSSTVSSS-KYRLRTSVLQAPHGD------------- 134 (795)
Q Consensus 79 P~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~---~~~-------g~~tv~~~-r~k~Ritfie~~~~d------------- 134 (795)
+.-|+|+|.++.++. +| +..|+... ... ........ ....+++|+..| .-
T Consensus 29 ~~~i~v~G~~~~GKS-sl----in~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dtp-G~~~~~~~~~~~~~~ 102 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKS-TA----INVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLP-GYGYAEVPGAAKAHW 102 (223)
T ss_dssp SCEEEEEESCHHHHH-HH----HHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECC-CCCSSCCCSTHHHHH
T ss_pred CCEEEEEcCCCCCHH-HH----HHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCC-CCCcccCChhhHHHH
Confidence 445889999998876 67 55554432 111 11112221 123689999988 41
Q ss_pred ---hHHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc-chhhhHHHHHHHHhhc
Q 003796 135 ---LVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT-DLKKRKDLKKMCISSL 210 (795)
Q Consensus 135 ---l~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~-~~Kk~~~~kK~lk~~f 210 (795)
+...+..+..+|+||+|+|++.+ +.....+++..|+..+.| ++.|++..|. +..........++..+
T Consensus 103 ~~~~~~~~~~~~~~d~vi~v~d~~~~--------~~~~~~~~~~~l~~~~~p-~i~v~nK~Dl~~~~~~~~~~~~~~~~l 173 (223)
T 4dhe_A 103 EQLLSSYLQTRPQLCGMILMMDARRP--------LTELDRRMIEWFAPTGKP-IHSLLTKCDKLTRQESINALRATQKSL 173 (223)
T ss_dssp HHHHHHHHHHCTTEEEEEEEEETTSC--------CCHHHHHHHHHHGGGCCC-EEEEEECGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcCcCEEEEEEeCCCC--------CCHHHHHHHHHHHhcCCC-EEEEEeccccCChhhHHHHHHHHHHHH
Confidence 12344455669999999999854 667778899999988887 6677888875 1112222333333333
Q ss_pred ccc----cCCCCeeEEeCC--HHHHHHHHHHHhhc
Q 003796 211 TSE----FPEDCKFYAADT--KDELHKFLWLFKEQ 239 (795)
Q Consensus 211 ~~e----f~~~~Klf~l~~--~~E~~nL~R~Is~~ 239 (795)
... ...+..+|.+|. ...+..|...|...
T Consensus 174 ~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~ 208 (223)
T 4dhe_A 174 DAYRDAGYAGKLTVQLFSALKRTGLDDAHALIESW 208 (223)
T ss_dssp HHHHHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHH
T ss_pred HhhhhcccCCCCeEEEeecCCCcCHHHHHHHHHHh
Confidence 332 134678888884 22344455555433
No 24
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=96.42 E-value=0.03 Score=54.09 Aligned_cols=139 Identities=12% Similarity=0.054 Sum_probs=80.3
Q ss_pred CEEEEEecCCCccChhhHHHHHHHhhccCC-C-----CCc----ceEEEecCceeeEEEEeCCCC------------C--
Q 003796 79 PRVIVLFGLSASVNLNSVREDLLRQLSSEG-T-----GAL----SSTVSSSKYRLRTSVLQAPHG------------D-- 134 (795)
Q Consensus 79 P~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~-~-----~~g----~~tv~~~r~k~Ritfie~~~~------------d-- 134 (795)
+.-|+|+|.++.+.. +| +..|.... . ..| ...... ..+++++.+| . .
T Consensus 23 ~~~i~v~G~~~~GKS-sl----i~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~~~l~Dt~-G~~~~~~~~~~~~~~~ 93 (195)
T 1svi_A 23 LPEIALAGRSNVGKS-SF----INSLINRKNLARTSSKPGKTQTLNFYII---NDELHFVDVP-GYGFAKVSKSEREAWG 93 (195)
T ss_dssp CCEEEEEEBTTSSHH-HH----HHHHHTC-------------CCEEEEEE---TTTEEEEECC-CBCCCSSCHHHHHHHH
T ss_pred CCEEEEECCCCCCHH-HH----HHHHhCCCCccccCCCCCceeeEEEEEE---CCcEEEEECC-CCCccccCHHHHHHHH
Confidence 456889999998876 67 44443322 1 111 111222 3478999998 4 1
Q ss_pred --hHHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc-chhhhHHHHHHHHhhcc
Q 003796 135 --LVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT-DLKKRKDLKKMCISSLT 211 (795)
Q Consensus 135 --l~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~-~~Kk~~~~kK~lk~~f~ 211 (795)
+...+..+.-+|.+|+++|++.+ +.....+++..+...+.| ++.|++..|. +..........++..+.
T Consensus 94 ~~~~~~~~~~~~~~~~i~v~d~~~~--------~~~~~~~~~~~~~~~~~p-~i~v~nK~Dl~~~~~~~~~~~~~~~~~~ 164 (195)
T 1svi_A 94 RMIETYITTREELKAVVQIVDLRHA--------PSNDDVQMYEFLKYYGIP-VIVIATKADKIPKGKWDKHAKVVRQTLN 164 (195)
T ss_dssp HHHHHHHHHCTTEEEEEEEEETTSC--------CCHHHHHHHHHHHHTTCC-EEEEEECGGGSCGGGHHHHHHHHHHHHT
T ss_pred HHHHHHHhhhhcCCEEEEEEECCCC--------CCHHHHHHHHHHHHcCCC-EEEEEECcccCChHHHHHHHHHHHHHHc
Confidence 12223333444999999999854 445556778888888887 6677888775 11223334445554443
Q ss_pred cccCCCCeeEEeCCH--HHHHHHHHHHh
Q 003796 212 SEFPEDCKFYAADTK--DELHKFLWLFK 237 (795)
Q Consensus 212 ~ef~~~~Klf~l~~~--~E~~nL~R~Is 237 (795)
. ..+..+|.+|.. ..+..|...|.
T Consensus 165 ~--~~~~~~~~~Sa~~~~gv~~l~~~l~ 190 (195)
T 1svi_A 165 I--DPEDELILFSSETKKGKDEAWGAIK 190 (195)
T ss_dssp C--CTTSEEEECCTTTCTTHHHHHHHHH
T ss_pred c--cCCCceEEEEccCCCCHHHHHHHHH
Confidence 2 235788888842 33445555443
No 25
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=96.37 E-value=0.03 Score=53.83 Aligned_cols=129 Identities=9% Similarity=0.118 Sum_probs=76.9
Q ss_pred EEEEEecCCCccChhhHHHHHHHhhccCCCCC-----cc-eEEEecCceeeEEEEeCCCC----------C--h----HH
Q 003796 80 RVIVLFGLSASVNLNSVREDLLRQLSSEGTGA-----LS-STVSSSKYRLRTSVLQAPHG----------D--L----VG 137 (795)
Q Consensus 80 ~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~~-----g~-~tv~~~r~k~Ritfie~~~~----------d--l----~~ 137 (795)
.-|+|+|.++.+.. +| +..|....... |. ..+.......+++++..| . . . ..
T Consensus 24 ~~i~v~G~~~~GKS-sl----i~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~-G~~~~~~~~~~~~~~~~~~~~ 97 (195)
T 3pqc_A 24 GEVAFVGRSNVGKS-SL----LNALFNRKIAFVSKTPGKTRSINFYLVNSKYYFVDLP-GYGYAKVSKKERMLWKRLVED 97 (195)
T ss_dssp CEEEEEEBTTSSHH-HH----HHHHHTSCCSCCCSSCCCCCCEEEEEETTTEEEEECC-CBSSSCCCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHH-HH----HHHHHcCccccccCCCCCccCeEEEEECCcEEEEECC-CCccccCChhhHHHHHHHHHH
Confidence 34789999998886 77 44443332111 11 111111123578899988 4 0 1 23
Q ss_pred HHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc-chhhhHHHHHHHHhhcccccCC
Q 003796 138 CMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT-DLKKRKDLKKMCISSLTSEFPE 216 (795)
Q Consensus 138 ~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~-~~Kk~~~~kK~lk~~f~~ef~~ 216 (795)
.+..+..+|+|++++|++.+ +......++..+...+.| ++.|++..|. +...+......++..+.. + .
T Consensus 98 ~~~~~~~~~~vi~v~d~~~~--------~~~~~~~~~~~~~~~~~p-~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~-~-~ 166 (195)
T 3pqc_A 98 YFKNRWSLQMVFLLVDGRIP--------PQDSDLMMVEWMKSLNIP-FTIVLTKMDKVKMSERAKKLEEHRKVFSK-Y-G 166 (195)
T ss_dssp HHHHCTTEEEEEEEEETTSC--------CCHHHHHHHHHHHHTTCC-EEEEEECGGGSCGGGHHHHHHHHHHHHHS-S-C
T ss_pred HHhcCcCceEEEEEecCCCC--------CCHHHHHHHHHHHHcCCC-EEEEEEChhcCChHHHHHHHHHHHHHHhh-c-C
Confidence 44455667999999999853 555666788888888887 5667888774 112233444555544432 1 2
Q ss_pred CCeeEEeCC
Q 003796 217 DCKFYAADT 225 (795)
Q Consensus 217 ~~Klf~l~~ 225 (795)
...+|.+|.
T Consensus 167 ~~~~~~~Sa 175 (195)
T 3pqc_A 167 EYTIIPTSS 175 (195)
T ss_dssp CSCEEECCT
T ss_pred CCceEEEec
Confidence 467888874
No 26
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=96.22 E-value=0.12 Score=61.02 Aligned_cols=105 Identities=23% Similarity=0.244 Sum_probs=71.5
Q ss_pred CCEEEEEecCCCccChhhHHHHHHHhhcc---C-------CC------------CC--cceEEEecCceeeEEEEeCCC-
Q 003796 78 PPRVIVLFGLSASVNLNSVREDLLRQLSS---E-------GT------------GA--LSSTVSSSKYRLRTSVLQAPH- 132 (795)
Q Consensus 78 pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~---~-------~~------------~~--g~~tv~~~r~k~Ritfie~~~- 132 (795)
..+.|+|+|.++.+++ +|++.|+..... . .. +. ...++... ..++.++.+|-
T Consensus 8 ~~~~i~IiG~~gaGKT-TLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~--~~~~nliDTpG~ 84 (665)
T 2dy1_A 8 MIRTVALVGHAGSGKT-TLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFR--GHRVFLLDAPGY 84 (665)
T ss_dssp CEEEEEEEESTTSSHH-HHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEET--TEEEEEEECCCS
T ss_pred CCcEEEEECCCCChHH-HHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeC--CEEEEEEeCCCc
Confidence 4578999999988775 665554532211 0 00 00 11222222 46788887652
Q ss_pred CCh-HHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc
Q 003796 133 GDL-VGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT 194 (795)
Q Consensus 133 ~dl-~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~ 194 (795)
.++ ..+..+++.||.+|+++|++.| ++.++.++++.+...|+|.++ |++.+|.
T Consensus 85 ~~f~~~~~~~l~~ad~~ilVvD~~~g--------~~~qt~~~~~~~~~~~ip~il-v~NKiD~ 138 (665)
T 2dy1_A 85 GDFVGEIRGALEAADAALVAVSAEAG--------VQVGTERAWTVAERLGLPRMV-VVTKLDK 138 (665)
T ss_dssp GGGHHHHHHHHHHCSEEEEEEETTTC--------SCHHHHHHHHHHHHTTCCEEE-EEECGGG
T ss_pred cchHHHHHHHHhhcCcEEEEEcCCcc--------cchhHHHHHHHHHHccCCEEE-EecCCch
Confidence 343 4578889999999999999854 888899999999999999765 5777775
No 27
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=96.16 E-value=0.098 Score=55.63 Aligned_cols=140 Identities=9% Similarity=0.050 Sum_probs=84.6
Q ss_pred EEEEecCCCccChhhHHHHHHHhhccCCCC---C------cceE-EEecCceeeEEEEeCCC-CC--------hH-HHHH
Q 003796 81 VIVLFGLSASVNLNSVREDLLRQLSSEGTG---A------LSST-VSSSKYRLRTSVLQAPH-GD--------LV-GCME 140 (795)
Q Consensus 81 iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~---~------g~~t-v~~~r~k~Ritfie~~~-~d--------l~-~~LD 140 (795)
.|+|+|.++.+.+ +| +..|...... . ..+. +... ....+.|+..|- .+ +. ....
T Consensus 9 ~V~ivG~~nvGKS-TL----ln~l~g~~~~ivs~~~~tTr~~i~~i~~~-~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~ 82 (301)
T 1wf3_A 9 FVAIVGKPNVGKS-TL----LNNLLGVKVAPISPRPQTTRKRLRGILTE-GRRQIVFVDTPGLHKPMDALGEFMDQEVYE 82 (301)
T ss_dssp EEEEECSTTSSHH-HH----HHHHHTSCCSCCCSSSCCCCSCEEEEEEE-TTEEEEEEECCCCCCCCSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHH-HH----HHHHhCCceeeecCCCCceeEEEEEEEEe-CCcEEEEecCccccchhhHHHHHHHHHHHH
Confidence 4999999998876 77 4444333221 1 1111 2212 246888998872 12 22 2345
Q ss_pred HHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhc--CCCceEEEeccCCcchhhhHHHHHHHHhhcccccCCCC
Q 003796 141 MAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSL--GLPSTAVLIRDLPTDLKKRKDLKKMCISSLTSEFPEDC 218 (795)
Q Consensus 141 ~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aq--G~P~vigVl~~Ld~~~Kk~~~~kK~lk~~f~~ef~~~~ 218 (795)
+.+-||.+|+|+|++.+ +......++..|+.. +.| ++.|++.+|.. .+...+...++.+ ....
T Consensus 83 ~l~~ad~il~VvD~~~~--------~~~~~~~i~~~l~~~~~~~p-~ilV~NK~Dl~-~~~~~~~~~~~~~-----~~~~ 147 (301)
T 1wf3_A 83 ALADVNAVVWVVDLRHP--------PTPEDELVARALKPLVGKVP-ILLVGNKLDAA-KYPEEAMKAYHEL-----LPEA 147 (301)
T ss_dssp HTSSCSEEEEEEETTSC--------CCHHHHHHHHHHGGGTTTSC-EEEEEECGGGC-SSHHHHHHHHHHT-----STTS
T ss_pred HHhcCCEEEEEEECCCC--------CChHHHHHHHHHHhhcCCCC-EEEEEECcccC-CchHHHHHHHHHh-----cCcC
Confidence 66889999999999854 555667778888877 777 56678888851 1111133444433 2245
Q ss_pred eeEEeCC--HHHHHHHHHHHhhccc
Q 003796 219 KFYAADT--KDELHKFLWLFKEQRL 241 (795)
Q Consensus 219 Klf~l~~--~~E~~nL~R~Is~~k~ 241 (795)
.+|.+|. ...+..|...|...-+
T Consensus 148 ~~~~iSA~~g~gv~~l~~~l~~~l~ 172 (301)
T 1wf3_A 148 EPRMLSALDERQVAELKADLLALMP 172 (301)
T ss_dssp EEEECCTTCHHHHHHHHHHHHTTCC
T ss_pred cEEEEeCCCCCCHHHHHHHHHHhcc
Confidence 6888885 4556677777765443
No 28
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.06 E-value=0.046 Score=51.73 Aligned_cols=133 Identities=14% Similarity=0.204 Sum_probs=77.6
Q ss_pred CCCEEEEEecCCCccChhhHHHHHHHhhccCCCC----------CcceEEEecCceeeEEEEeCCC-CChHHH-HHHHhh
Q 003796 77 SPPRVIVLFGLSASVNLNSVREDLLRQLSSEGTG----------ALSSTVSSSKYRLRTSVLQAPH-GDLVGC-MEMAKV 144 (795)
Q Consensus 77 ~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~----------~g~~tv~~~r~k~Ritfie~~~-~dl~~~-LD~aKv 144 (795)
..+.-|+|+|.++.+.. +| +..|+..... .+..++.... .+++++..|- ..+..+ ...++.
T Consensus 6 ~~~~~i~v~G~~~~GKs-sl----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~ 78 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKT-TL----LDAIRHSKVTEQEAGGITQHIGAYQVTVND--KKITFLDTPGHEAFTTMRARGAQV 78 (178)
T ss_dssp CCCCEEEEESCTTTTHH-HH----HHHHHTTCSSCSSCCSSSTTCCCCEEEETT--EEEEESCCCSSSSSSCSCCSSCCC
T ss_pred CCCCEEEEECCCCCCHH-HH----HHHHhCCccccCCCCceeEeeeEEEEEeCC--ceEEEEECCCCHHHHHHHHHHHhh
Confidence 34566899999998876 67 4444322111 0334444443 5677777652 111111 233567
Q ss_pred hceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchhhhHHHHHHHHh--hcccccCCCCeeEE
Q 003796 145 ADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKKRKDLKKMCIS--SLTSEFPEDCKFYA 222 (795)
Q Consensus 145 ADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~~~Kk~~~~kK~lk~--~f~~ef~~~~Klf~ 222 (795)
||.+|+++|++.+ ...+.++.|..+...+.| ++.|++..|............++. .+...+.....+|.
T Consensus 79 ~d~~i~v~d~~~~--------~~~~~~~~l~~~~~~~~p-~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (178)
T 2lkc_A 79 TDIVILVVAADDG--------VMPQTVEAINHAKAANVP-IIVAINKMDKPEANPDRVMQELMEYNLVPEEWGGDTIFCK 149 (178)
T ss_dssp CCEEEEEEETTCC--------CCHHHHHHHHHHGGGSCC-EEEEEETTTSSCSCHHHHHHHHTTTTCCBTTTTSSEEEEE
T ss_pred CCEEEEEEECCCC--------CcHHHHHHHHHHHhCCCC-EEEEEECccCCcCCHHHHHHHHHhcCcChhHcCCcccEEE
Confidence 9999999998853 456778888888888888 777888888511111233333322 12222222357888
Q ss_pred eCC
Q 003796 223 ADT 225 (795)
Q Consensus 223 l~~ 225 (795)
+|.
T Consensus 150 ~Sa 152 (178)
T 2lkc_A 150 LSA 152 (178)
T ss_dssp CCS
T ss_pred Eec
Confidence 884
No 29
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=95.94 E-value=0.094 Score=52.55 Aligned_cols=105 Identities=11% Similarity=0.144 Sum_probs=64.9
Q ss_pred CCCEEEEEecCCCccChhhHHHHHHHhhccCCCCC---cceE--EEecC---ceeeEEEEeCCCCC------------hH
Q 003796 77 SPPRVIVLFGLSASVNLNSVREDLLRQLSSEGTGA---LSST--VSSSK---YRLRTSVLQAPHGD------------LV 136 (795)
Q Consensus 77 ~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~~---g~~t--v~~~r---~k~Ritfie~~~~d------------l~ 136 (795)
..+.-|+|+|.++.+.. +| +..|+...... ...| +.... ...+++|+..| .- ..
T Consensus 27 ~~~~kI~vvG~~~vGKS-sL----in~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dtp-G~~~~~~~~~~~~~~~ 100 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKS-SF----MNIVSRANVDVQSYSFTTKNLYVGHFDHKLNKYQIIDTP-GLLDRAFENRNTIEMT 100 (228)
T ss_dssp TTSEEEEEECSTTSSHH-HH----HHHHTTTCEEEECC-----CEEEEEEEETTEEEEEEECT-TTTTSCGGGCCHHHHH
T ss_pred CCCCEEEEECCCCCCHH-HH----HHHHhCCCCccCCCCCcceeeeeeeeecCCCeEEEEECC-CCcCcccchhhhHHHH
Confidence 34567999999998886 77 55554332111 1111 11111 12578899987 43 34
Q ss_pred HHHHHHhhhceEEEeeeCCCccccccccccCh-HHHHHHHHHHhc--CCCceEEEeccCCc
Q 003796 137 GCMEMAKVADLVAFVASASSFSEESMSYYIDS-FGNQCLSVFRSL--GLPSTAVLIRDLPT 194 (795)
Q Consensus 137 ~~LD~aKvADlVll~idas~g~~~~~~~~fe~-eg~e~L~~l~aq--G~P~vigVl~~Ld~ 194 (795)
++......||.+|+|+|++.. ..|+. ...+++..++.. +.| ++.|++..|.
T Consensus 101 ~~~~~~~~~d~~i~v~d~~~~------~s~~~~~~~~~~~~l~~~~~~~p-iilv~nK~Dl 154 (228)
T 2qu8_A 101 TITALAHINGVILFIIDISEQ------CGLTIKEQINLFYSIKSVFSNKS-IVIGFNKIDK 154 (228)
T ss_dssp HHHHHHTSSEEEEEEEETTCT------TSSCHHHHHHHHHHHHTCC-CCC-EEEEEECGGG
T ss_pred HHHHhhccccEEEEEEecccc------cCcchHHHHHHHHHHHHhhcCCc-EEEEEeCccc
Confidence 455567889999999999853 33553 335677777765 666 6677787774
No 30
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=95.93 E-value=0.073 Score=51.07 Aligned_cols=88 Identities=8% Similarity=0.053 Sum_probs=52.5
Q ss_pred eeEEEEeCCCCC---hHHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchh--
Q 003796 123 LRTSVLQAPHGD---LVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLK-- 197 (795)
Q Consensus 123 ~Ritfie~~~~d---l~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~~~K-- 197 (795)
.+++|+..| .. ...+...++-||.+|+|+|++.+ ..|+. ...+|..+..+.-+.++.|++..|....
T Consensus 93 ~~~~i~Dt~-G~~~~~~~~~~~~~~~d~~i~v~D~~~~------~s~~~-~~~~~~~i~~~~~~piilv~NK~D~~~~~~ 164 (208)
T 3clv_A 93 IKFDIWDTA-GQERYASIVPLYYRGATCAIVVFDISNS------NTLDR-AKTWVNQLKISSNYIIILVANKIDKNKFQV 164 (208)
T ss_dssp EEEEEEECT-TGGGCTTTHHHHHTTCSEEEEEEETTCH------HHHHH-HHHHHHHHHHHSCCEEEEEEECTTCC-CCS
T ss_pred eEEEEEECC-CcHHHHHHHHHHhcCCCEEEEEEECCCH------HHHHH-HHHHHHHHHhhCCCcEEEEEECCCcccccC
Confidence 688999887 32 11245567889999999999853 22332 2344555544332778888998884111
Q ss_pred hhHHHHHHHHhhcccccCCCCeeEEeCC
Q 003796 198 KRKDLKKMCISSLTSEFPEDCKFYAADT 225 (795)
Q Consensus 198 k~~~~kK~lk~~f~~ef~~~~Klf~l~~ 225 (795)
.....++.++.. +..+|.+|.
T Consensus 165 ~~~~~~~~~~~~-------~~~~~~~Sa 185 (208)
T 3clv_A 165 DILEVQKYAQDN-------NLLFIQTSA 185 (208)
T ss_dssp CHHHHHHHHHHT-------TCEEEEECT
T ss_pred CHHHHHHHHHHc-------CCcEEEEec
Confidence 123344444331 457888874
No 31
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=95.91 E-value=0.35 Score=55.59 Aligned_cols=104 Identities=14% Similarity=0.135 Sum_probs=71.0
Q ss_pred CEEEEEecCCCccChhhHHHHHHHh------h-------------c---------cCCCCCcceEEEecCceeeEEEEeC
Q 003796 79 PRVIVLFGLSASVNLNSVREDLLRQ------L-------------S---------SEGTGALSSTVSSSKYRLRTSVLQA 130 (795)
Q Consensus 79 P~iV~Vvg~~~~~~~~sl~~~lvk~------~-------------~---------~~~~~~g~~tv~~~r~k~Ritfie~ 130 (795)
.+.|+|+|.++.+++ +|++.|+.. . . .........++... ..+++|+.+
T Consensus 13 ~r~IaIiG~~~aGKT-TL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~--~~~i~liDT 89 (528)
T 3tr5_A 13 RRTFAIISHPDAGKT-TLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYK--DYLINLLDT 89 (528)
T ss_dssp EEEEEEEECTTSSHH-HHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEET--TEEEEEECC
T ss_pred CCEEEEECCCCCcHH-HHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeC--CEEEEEEEC
Confidence 356999999998775 665554310 0 0 00111123333333 468999988
Q ss_pred CC-CC-hHHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc
Q 003796 131 PH-GD-LVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT 194 (795)
Q Consensus 131 ~~-~d-l~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~ 194 (795)
|- .+ ...+......||.+|+|+|++.| +...+..++..+...|+| ++.|++.+|.
T Consensus 90 PG~~df~~~~~~~l~~aD~allVvDa~~g--------~~~~t~~~~~~~~~~~iP-iivviNK~Dl 146 (528)
T 3tr5_A 90 PGHADFTEDTYRTLTAVDSALMVIDAAKG--------VEPRTIKLMEVCRLRHTP-IMTFINKMDR 146 (528)
T ss_dssp CCSTTCCHHHHHGGGGCSEEEEEEETTTC--------SCHHHHHHHHHHHTTTCC-EEEEEECTTS
T ss_pred CCchhHHHHHHHHHHhCCEEEEEEeCCCC--------CCHHHHHHHHHHHHcCCC-EEEEEeCCCC
Confidence 73 23 34567778999999999999965 778899999999999998 5567888875
No 32
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=95.90 E-value=0.61 Score=55.44 Aligned_cols=79 Identities=11% Similarity=0.120 Sum_probs=56.4
Q ss_pred eeEEEEeCCC-CCh-HHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchhhhH
Q 003796 123 LRTSVLQAPH-GDL-VGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKKRK 200 (795)
Q Consensus 123 ~Ritfie~~~-~dl-~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~~~Kk~~ 200 (795)
.++.|+.+|- .|+ ..+.-+.+.||.+|+++|++.| ....+.+++..+...|+|.+ .|++.+|.......
T Consensus 82 ~~i~liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~g--------v~~qt~~~~~~~~~~~ip~i-lviNKiD~~~~~~~ 152 (704)
T 2rdo_7 82 HRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGG--------VQPQSETVWRQANKYKVPRI-AFVNKMDRMGANFL 152 (704)
T ss_pred eeEEEEeCCCccchHHHHHHHHHHCCEEEEEEeCCCC--------CcHHHHHHHHHHHHcCCCEE-EEEeCCCcccccHH
Confidence 6889999873 243 4567788999999999999965 66678889999999999965 46888875112223
Q ss_pred HHHHHHHhhc
Q 003796 201 DLKKMCISSL 210 (795)
Q Consensus 201 ~~kK~lk~~f 210 (795)
.+...++.+|
T Consensus 153 ~~~~~l~~~l 162 (704)
T 2rdo_7 153 KVVNQIKTRL 162 (704)
T ss_pred HHHHHHHHHh
Confidence 3444444443
No 33
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=95.82 E-value=0.36 Score=57.24 Aligned_cols=122 Identities=11% Similarity=0.041 Sum_probs=75.6
Q ss_pred CEEEEEecCCCccChhhHHHHHHHhh---ccC---CC----------C-CcceEEEe-----cCceeeEEEEeCCC-CC-
Q 003796 79 PRVIVLFGLSASVNLNSVREDLLRQL---SSE---GT----------G-ALSSTVSS-----SKYRLRTSVLQAPH-GD- 134 (795)
Q Consensus 79 P~iV~Vvg~~~~~~~~sl~~~lvk~~---~~~---~~----------~-~g~~tv~~-----~r~k~Ritfie~~~-~d- 134 (795)
.+.|+|+|..+.++. +|++.|+..- ... +. + ...+|+.+ .....++.|+.+|- .|
T Consensus 12 ~~~I~IvG~~~aGKT-TL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 90 (691)
T 1dar_A 12 LRNIGIAAHIDAGKT-TTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVDF 90 (691)
T ss_dssp EEEEEEEECTTSCHH-HHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTTC
T ss_pred ccEEEEECCCCCCHH-HHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccch
Confidence 567999999988775 6655555321 000 00 0 11122221 11136889998873 24
Q ss_pred hHHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchhhhHHHHHHHHhhc
Q 003796 135 LVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKKRKDLKKMCISSL 210 (795)
Q Consensus 135 l~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~~~Kk~~~~kK~lk~~f 210 (795)
...+..+.+.||.+|+++|++.| ....+.+++..+..+|+|.+ .|++.+|........+...++.++
T Consensus 91 ~~~~~~~l~~aD~~ilVvDa~~g--------~~~~t~~~~~~~~~~~~p~i-vviNKiD~~~~~~~~~~~~l~~~l 157 (691)
T 1dar_A 91 TIEVERSMRVLDGAIVVFDSSQG--------VEPQSETVWRQAEKYKVPRI-AFANKMDKTGADLWLVIRTMQERL 157 (691)
T ss_dssp HHHHHHHHHHCSEEEEEEETTTC--------SCHHHHHHHHHHHHTTCCEE-EEEECTTSTTCCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCEEEEEEECCCC--------cchhhHHHHHHHHHcCCCEE-EEEECCCcccCCHHHHHHHHHHHh
Confidence 34567788999999999999965 66778889999999999965 568888852122344555555554
No 34
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.71 E-value=0.086 Score=50.72 Aligned_cols=162 Identities=6% Similarity=0.002 Sum_probs=84.0
Q ss_pred CCCEEEEEecCCCccChhhHHHHHHH-hhccCCCCCc--ceEEEecCceeeEEEEeCCCC-ChHHH-HHHHhhhceEEEe
Q 003796 77 SPPRVIVLFGLSASVNLNSVREDLLR-QLSSEGTGAL--SSTVSSSKYRLRTSVLQAPHG-DLVGC-MEMAKVADLVAFV 151 (795)
Q Consensus 77 ~pP~iV~Vvg~~~~~~~~sl~~~lvk-~~~~~~~~~g--~~tv~~~r~k~Ritfie~~~~-dl~~~-LD~aKvADlVll~ 151 (795)
..+.-|+|+|.++.+.. +|++.|+. .+..+..+.| ..++... ..+++++.++-. ....+ ....+-||.+|+|
T Consensus 14 ~~~~~i~v~G~~~~GKs-sl~~~l~~~~~~~~~~t~~~~~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v 90 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKT-TILYQFSMNEVVHTSPTIGSNVEEIVIN--NTRFLMWDIGGQESLRSSWNTYYTNTEFVIVV 90 (187)
T ss_dssp TSCEEEEEEESTTSSHH-HHHHHHHTTSCEEEECCSCSSCEEEEET--TEEEEEEECCC----CGGGHHHHTTCCEEEEE
T ss_pred CCccEEEEECCCCCCHH-HHHHHHhcCCCCcCcCCCccceEEEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEEEE
Confidence 34677999999998875 77333331 1111111112 2233333 368889988731 12222 3456789999999
Q ss_pred eeCCCccccccccccChHHHHHHHHHHh---cCCCceEEEeccCCcch-hhhHHHHHHHHhhcccccCCCCeeEEeCC--
Q 003796 152 ASASSFSEESMSYYIDSFGNQCLSVFRS---LGLPSTAVLIRDLPTDL-KKRKDLKKMCISSLTSEFPEDCKFYAADT-- 225 (795)
Q Consensus 152 idas~g~~~~~~~~fe~eg~e~L~~l~a---qG~P~vigVl~~Ld~~~-Kk~~~~kK~lk~~f~~ef~~~~Klf~l~~-- 225 (795)
+|++.. ..|+.....+..+++. .+.| ++.|++..|... .....+.+.+...... ..+..+|.+|.
T Consensus 91 ~d~~~~------~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~~~~~~i~~~~~~~~~~--~~~~~~~~~Sa~~ 161 (187)
T 1zj6_A 91 VDSTDR------ERISVTREELYKMLAHEDLRKAG-LLIFANKQDVKECMTVAEISQFLKLTSIK--DHQWHIQACCALT 161 (187)
T ss_dssp EETTCT------TTHHHHHHHHHHHHTSGGGTTCE-EEEEEECTTSTTCCCHHHHHHHHTGGGCC--SSCEEEEECBTTT
T ss_pred EeCCCH------HHHHHHHHHHHHHHhchhhCCCe-EEEEEECCCCcCCCCHHHHHHHhChhhhc--CCCcEEEEccCCC
Confidence 999853 3355555555555543 4555 667788888511 1123344433321111 12457788874
Q ss_pred HHHHHHHHHHHhhccccCcccccCC
Q 003796 226 KDELHKFLWLFKEQRLTVPHWRNQR 250 (795)
Q Consensus 226 ~~E~~nL~R~Is~~k~r~l~WR~~r 250 (795)
...+..|...|...-..+..|...+
T Consensus 162 g~gi~~l~~~l~~~~~~~~~~~~~~ 186 (187)
T 1zj6_A 162 GEGLCQGLEWMMSRLKIRLEHHHHH 186 (187)
T ss_dssp TBTHHHHHHHHHHHHCC--------
T ss_pred CcCHHHHHHHHHHHHHHHhhhhccC
Confidence 3345666666666555555554433
No 35
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=95.64 E-value=0.08 Score=60.93 Aligned_cols=79 Identities=15% Similarity=0.203 Sum_probs=58.7
Q ss_pred eeeEEEEeCCC-CCh-HHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchhhh
Q 003796 122 RLRTSVLQAPH-GDL-VGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKKR 199 (795)
Q Consensus 122 k~Ritfie~~~-~dl-~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~~~Kk~ 199 (795)
..+++++.+|- .++ ..+...+..||.+|+|+|++.| ++.++.+++..+...|+| ++.|++.+|......
T Consensus 81 ~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvDa~~g--------~~~~t~~~~~~~~~~~ip-iivviNK~Dl~~~~~ 151 (529)
T 2h5e_A 81 DCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKG--------VEDRTRKLMEVTRLRDTP-ILTFMNKLDRDIRDP 151 (529)
T ss_dssp TEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTC--------SCHHHHHHHHHHTTTTCC-EEEEEECTTSCCSCH
T ss_pred CeEEEEEECCCChhHHHHHHHHHHHCCEEEEEEeCCcc--------chHHHHHHHHHHHHcCCC-EEEEEcCcCCccccH
Confidence 46899999973 243 3577888999999999999965 778899999999999999 778899888511222
Q ss_pred HHHHHHHHhh
Q 003796 200 KDLKKMCISS 209 (795)
Q Consensus 200 ~~~kK~lk~~ 209 (795)
.++...++..
T Consensus 152 ~~~~~~i~~~ 161 (529)
T 2h5e_A 152 MELLDEVENE 161 (529)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 2344444444
No 36
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=95.59 E-value=0.12 Score=47.70 Aligned_cols=101 Identities=15% Similarity=0.131 Sum_probs=62.7
Q ss_pred EEEecCCCccChhhHHHHHHHhhcc-CCCCC----cc--eEEEecCceeeEEEEeCCCCC--------hH-HHHHHHhhh
Q 003796 82 IVLFGLSASVNLNSVREDLLRQLSS-EGTGA----LS--STVSSSKYRLRTSVLQAPHGD--------LV-GCMEMAKVA 145 (795)
Q Consensus 82 V~Vvg~~~~~~~~sl~~~lvk~~~~-~~~~~----g~--~tv~~~r~k~Ritfie~~~~d--------l~-~~LD~aKvA 145 (795)
|+|+|+++.+.. +|++.|+..... ..... .. .++... ..++.++.+|-.. +. ......+-|
T Consensus 4 i~v~G~~~~GKS-sli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 80 (161)
T 2dyk_A 4 VVIVGRPNVGKS-SLFNRLLKKRSAVVADVPGVTRDLKEGVVETD--RGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDA 80 (161)
T ss_dssp EEEECCTTSSHH-HHHHHHHHCCC-----------CCEEEEEEET--TEEEEEEECGGGCSSSSCCHHHHHHHHHHTTTC
T ss_pred EEEECCCCCCHH-HHHHHHhCCCeeeccCCCCceecceEEEEEeC--CceEEEEECCCCCCccchHHHHHHHHHHHHHhC
Confidence 789999998876 673333322100 00000 11 122222 2578899887322 12 234556889
Q ss_pred ceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc
Q 003796 146 DLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT 194 (795)
Q Consensus 146 DlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~ 194 (795)
|.+|+++|++.+ +......++..++..+.| ++.|++..|.
T Consensus 81 ~~~i~v~d~~~~--------~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl 120 (161)
T 2dyk_A 81 EVVLFAVDGRAE--------LTQADYEVAEYLRRKGKP-VILVATKVDD 120 (161)
T ss_dssp SEEEEEEESSSC--------CCHHHHHHHHHHHHHTCC-EEEEEECCCS
T ss_pred CEEEEEEECCCc--------ccHhHHHHHHHHHhcCCC-EEEEEECccc
Confidence 999999999853 555567788888888887 6778999886
No 37
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=95.44 E-value=0.2 Score=48.27 Aligned_cols=145 Identities=14% Similarity=0.133 Sum_probs=79.4
Q ss_pred CEEEEEecCCCccChhhHHHHHHHhhccCCC------CCcceEEEecCceeeEEEEeCCCCC--hHHH-HHHHhhhceEE
Q 003796 79 PRVIVLFGLSASVNLNSVREDLLRQLSSEGT------GALSSTVSSSKYRLRTSVLQAPHGD--LVGC-MEMAKVADLVA 149 (795)
Q Consensus 79 P~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~------~~g~~tv~~~r~k~Ritfie~~~~d--l~~~-LD~aKvADlVl 149 (795)
++-|+|+|.++.+.. +| +..|..... +.|...........++.++..+ .. +..+ ....+-||.+|
T Consensus 22 ~~ki~v~G~~~~GKS-sl----i~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~-G~~~~~~~~~~~~~~~d~ii 95 (188)
T 1zd9_A 22 EMELTLVGLQYSGKT-TF----VNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIG-GQPRFRSMWERYCRGVSAIV 95 (188)
T ss_dssp EEEEEEECSTTSSHH-HH----HHHHHHSCCCCSCCCCCSEEEEEEEETTEEEEEEEEC-CSHHHHTTHHHHHTTCSEEE
T ss_pred ccEEEEECCCCCCHH-HH----HHHHHcCCCCCccCCCCceeEEEEEeCCEEEEEEECC-CCHhHHHHHHHHHccCCEEE
Confidence 456999999998875 77 444432221 1132221122224688889887 43 2222 33457799999
Q ss_pred EeeeCCCccccccccccChHHHHHHHHHHh---cCCCceEEEeccCCcchh-hhHHHHHHHHhhcccccCCCCeeEEeCC
Q 003796 150 FVASASSFSEESMSYYIDSFGNQCLSVFRS---LGLPSTAVLIRDLPTDLK-KRKDLKKMCISSLTSEFPEDCKFYAADT 225 (795)
Q Consensus 150 l~idas~g~~~~~~~~fe~eg~e~L~~l~a---qG~P~vigVl~~Ld~~~K-k~~~~kK~lk~~f~~ef~~~~Klf~l~~ 225 (795)
||+|++.. ..|+.....+..+++. .+.| ++.|++..|.... ...++.+.+...+... .+..+|.+|.
T Consensus 96 ~v~D~~~~------~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~~~SA 166 (188)
T 1zd9_A 96 YMVDAADQ------EKIEASKNELHNLLDKPQLQGIP-VLVLGNKRDLPGALDEKELIEKMNLSAIQD--REICCYSISC 166 (188)
T ss_dssp EEEETTCG------GGHHHHHHHHHHHHTCGGGTTCC-EEEEEECTTSTTCCCHHHHHHHTTGGGCCS--SCEEEEECCT
T ss_pred EEEECCCH------HHHHHHHHHHHHHHhCcccCCCC-EEEEEECCCCccCCCHHHHHHHhChhhhcc--CCeeEEEEEC
Confidence 99999843 3355555555555553 5665 6677888885111 1223333332221111 2456788874
Q ss_pred --HHHHHHHHHHHhh
Q 003796 226 --KDELHKFLWLFKE 238 (795)
Q Consensus 226 --~~E~~nL~R~Is~ 238 (795)
...+..|...|..
T Consensus 167 ~~g~gv~~l~~~l~~ 181 (188)
T 1zd9_A 167 KEKDNIDITLQWLIQ 181 (188)
T ss_dssp TTCTTHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 2335555555544
No 38
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=95.27 E-value=0.19 Score=46.97 Aligned_cols=137 Identities=9% Similarity=0.044 Sum_probs=75.4
Q ss_pred CCCEEEEEecCCCccChhhHHHHHHHh-hccCCCCCcce--EEEecCceeeEEEEeCCCC-ChHHHH-HHHhhhceEEEe
Q 003796 77 SPPRVIVLFGLSASVNLNSVREDLLRQ-LSSEGTGALSS--TVSSSKYRLRTSVLQAPHG-DLVGCM-EMAKVADLVAFV 151 (795)
Q Consensus 77 ~pP~iV~Vvg~~~~~~~~sl~~~lvk~-~~~~~~~~g~~--tv~~~r~k~Ritfie~~~~-dl~~~L-D~aKvADlVll~ 151 (795)
..++-|+|+|.++.+.. +|++.|... +.....+.|.. ++... ..+++++..|-. ....+. ...+-||.+|++
T Consensus 5 ~~~~~i~v~G~~~~GKs-sl~~~l~~~~~~~~~~t~~~~~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v 81 (171)
T 1upt_A 5 TREMRILILGLDGAGKT-TILYRLQVGEVVTTIPTIGFNVETVTYK--NLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYV 81 (171)
T ss_dssp SSCEEEEEECSTTSSHH-HHHHHHHHSSCCCCCCCSSEEEEEEEET--TEEEEEEEECCCGGGGGGGGGGCTTCSEEEEE
T ss_pred CCccEEEEECCCCCCHH-HHHHHHhcCCCCCcCCcCccceEEEEEC--CEEEEEEECCCChhhhHHHHHHhccCCEEEEE
Confidence 34677999999998876 773333221 11111111321 23333 468888988731 233332 445679999999
Q ss_pred eeCCCccccccccccChHHHHHHHHHHh---cCCCceEEEeccCCcc-hhhhHHHHHHHHhhcccccCCCCeeEEeCC
Q 003796 152 ASASSFSEESMSYYIDSFGNQCLSVFRS---LGLPSTAVLIRDLPTD-LKKRKDLKKMCISSLTSEFPEDCKFYAADT 225 (795)
Q Consensus 152 idas~g~~~~~~~~fe~eg~e~L~~l~a---qG~P~vigVl~~Ld~~-~Kk~~~~kK~lk~~f~~ef~~~~Klf~l~~ 225 (795)
+|++.. ..|+.....+..+++. .+.| ++.|++..|.. ......+.+.+...+-.. .+..+|..|.
T Consensus 82 ~d~~~~------~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Sa 150 (171)
T 1upt_A 82 VDSCDR------DRIGISKSELVAMLEEEELRKAI-LVVFANKQDMEQAMTSSEMANSLGLPALKD--RKWQIFKTSA 150 (171)
T ss_dssp EETTCC------TTHHHHHHHHHHHHTCGGGTTCE-EEEEEECTTSTTCCCHHHHHHHHTGGGCTT--SCEEEEECCT
T ss_pred EECCCH------HHHHHHHHHHHHHHhchhhCCCE-EEEEEECCCCcCCCCHHHHHHHhCchhccC--CceEEEECcC
Confidence 999853 3366555666666654 4555 66778888851 111233444433222111 2346777773
No 39
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=95.18 E-value=0.16 Score=46.98 Aligned_cols=144 Identities=9% Similarity=0.089 Sum_probs=78.1
Q ss_pred CEEEEEecCCCccChhhHHHHHHHhh-cc-CCCCCc---ceEEEecCceeeEEEEeCCC-CChHHHH-HHHhhhceEEEe
Q 003796 79 PRVIVLFGLSASVNLNSVREDLLRQL-SS-EGTGAL---SSTVSSSKYRLRTSVLQAPH-GDLVGCM-EMAKVADLVAFV 151 (795)
Q Consensus 79 P~iV~Vvg~~~~~~~~sl~~~lvk~~-~~-~~~~~g---~~tv~~~r~k~Ritfie~~~-~dl~~~L-D~aKvADlVll~ 151 (795)
+.-|+|+|+++.+.. +|++.++..- .. +..+.+ ..++.......+++++.+|- .....+. ...+-||.++++
T Consensus 3 ~~~i~v~G~~~~GKS-sli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (167)
T 1kao_A 3 EYKVVVLGSGGVGKS-ALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV 81 (167)
T ss_dssp EEEEEEECCTTSSHH-HHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred EEEEEEECCCCCCHH-HHHHHHHcCCCcccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence 456999999998876 6733333211 00 111111 22333344456789999873 2344443 346779999999
Q ss_pred eeCCCcccccccccc---ChHHHHHHHHHHhcCCCceEEEeccCCc-chhh--hHHHHHHHHhhcccccCCCCeeEEeCC
Q 003796 152 ASASSFSEESMSYYI---DSFGNQCLSVFRSLGLPSTAVLIRDLPT-DLKK--RKDLKKMCISSLTSEFPEDCKFYAADT 225 (795)
Q Consensus 152 idas~g~~~~~~~~f---e~eg~e~L~~l~aqG~P~vigVl~~Ld~-~~Kk--~~~~kK~lk~~f~~ef~~~~Klf~l~~ 225 (795)
+|++.. ..| ..+-.+++..+...+.| ++.|++..|. +.+. ....++..+. + +..+|.+|.
T Consensus 82 ~d~~~~------~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~-----~--~~~~~~~Sa 147 (167)
T 1kao_A 82 YSLVNQ------QSFQDIKPMRDQIIRVKRYEKVP-VILVGNKVDLESEREVSSSEGRALAEE-----W--GCPFMETSA 147 (167)
T ss_dssp EETTCH------HHHHHHHHHHHHHHHHTTTSCCC-EEEEEECGGGGGGCCSCHHHHHHHHHH-----H--TSCEEEECT
T ss_pred EeCCCH------HHHHHHHHHHHHHHHhcCCCCCC-EEEEEECCcccccccCCHHHHHHHHHH-----h--CCCEEEecC
Confidence 999853 223 23334455555455777 6677888774 1111 1122222222 1 357888884
Q ss_pred --HHHHHHHHHHHh
Q 003796 226 --KDELHKFLWLFK 237 (795)
Q Consensus 226 --~~E~~nL~R~Is 237 (795)
...+..|...|.
T Consensus 148 ~~~~gi~~l~~~l~ 161 (167)
T 1kao_A 148 KSKTMVDELFAEIV 161 (167)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHH
Confidence 334555555554
No 40
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=95.14 E-value=0.17 Score=47.83 Aligned_cols=149 Identities=10% Similarity=0.076 Sum_probs=82.5
Q ss_pred CCCEEEEEecCCCccChhhHHHHHHHhh-ccC-CCCCc----ceEEEecCceeeEEEEeCCCCC-hHH-HHHHHhhhceE
Q 003796 77 SPPRVIVLFGLSASVNLNSVREDLLRQL-SSE-GTGAL----SSTVSSSKYRLRTSVLQAPHGD-LVG-CMEMAKVADLV 148 (795)
Q Consensus 77 ~pP~iV~Vvg~~~~~~~~sl~~~lvk~~-~~~-~~~~g----~~tv~~~r~k~Ritfie~~~~d-l~~-~LD~aKvADlV 148 (795)
..++-|+|+|.++.+.. +|++.|+..- ... ..+.| ..++.......+++|+.+|-.. +.. .....+-||.+
T Consensus 10 ~~~~ki~v~G~~~~GKS-sli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 88 (181)
T 2efe_B 10 SINAKLVLLGDVGAGKS-SLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 88 (181)
T ss_dssp CEEEEEEEECCTTSCHH-HHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEE
T ss_pred ccceEEEEECcCCCCHH-HHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEE
Confidence 44566999999998876 6733333211 110 11112 2334344445689999987321 222 23456779999
Q ss_pred EEeeeCCCccccccccccChHHHHHHHHHHhcCCC--ceEEEeccCCcc-hhh--hHHHHHHHHhhcccccCCCCeeEEe
Q 003796 149 AFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLP--STAVLIRDLPTD-LKK--RKDLKKMCISSLTSEFPEDCKFYAA 223 (795)
Q Consensus 149 ll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P--~vigVl~~Ld~~-~Kk--~~~~kK~lk~~f~~ef~~~~Klf~l 223 (795)
|+++|++.. ..|+ ...++|..+..++.| .++.|++..|.. ... ....++..+.. +..+|.+
T Consensus 89 i~v~d~~~~------~s~~-~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~-------~~~~~~~ 154 (181)
T 2efe_B 89 IIVFDVTNQ------ASFE-RAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQEN-------GLFFMET 154 (181)
T ss_dssp EEEEETTCH------HHHH-HHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHT-------TCEEEEC
T ss_pred EEEEECCCH------HHHH-HHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHc-------CCEEEEE
Confidence 999999853 2233 234666777777544 356678888851 111 12233333221 4567887
Q ss_pred CC--HHHHHHHHHHHhhcc
Q 003796 224 DT--KDELHKFLWLFKEQR 240 (795)
Q Consensus 224 ~~--~~E~~nL~R~Is~~k 240 (795)
|. ...+..|...|...-
T Consensus 155 Sa~~g~gi~~l~~~l~~~~ 173 (181)
T 2efe_B 155 SAKTATNVKEIFYEIARRL 173 (181)
T ss_dssp CSSSCTTHHHHHHHHHHTC
T ss_pred ECCCCCCHHHHHHHHHHHH
Confidence 74 234566666665443
No 41
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=95.06 E-value=0.081 Score=56.16 Aligned_cols=147 Identities=13% Similarity=0.076 Sum_probs=85.6
Q ss_pred CEEEEEecCCCccChhhHHHHHHHhh-ccCCCCCc-----ceEEEecCceeeEEEEeCCCCCh---H-----H----HHH
Q 003796 79 PRVIVLFGLSASVNLNSVREDLLRQL-SSEGTGAL-----SSTVSSSKYRLRTSVLQAPHGDL---V-----G----CME 140 (795)
Q Consensus 79 P~iV~Vvg~~~~~~~~sl~~~lvk~~-~~~~~~~g-----~~tv~~~r~k~Ritfie~~~~dl---~-----~----~LD 140 (795)
+..|+|+|.++.+++ +|++.|+..- .-.....+ ...+... ....++|+..| .-. . . ...
T Consensus 8 ~~~VaIvG~~nvGKS-TLln~L~g~~~~i~s~~~~tTr~~~~gi~~~-~~~~i~~iDTp-G~~~~~~~~l~~~~~~~~~~ 84 (301)
T 1ega_A 8 CGFIAIVGRPNVGKS-TLLNKLLGQKISITSRKAQTTRHRIVGIHTE-GAYQAIYVDTP-GLHMEEKRAINRLMNKAASS 84 (301)
T ss_dssp EEEEEEECSSSSSHH-HHHHHHHTCSEEECCCCSSCCSSCEEEEEEE-TTEEEEEESSS-SCCHHHHHHHHHHHTCCTTS
T ss_pred CCEEEEECCCCCCHH-HHHHHHHCCCccccCCCCCcceeeEEEEEEE-CCeeEEEEECc-CCCccchhhHHHHHHHHHHH
Confidence 457999999998876 7744444321 00010001 1112211 23578888876 432 1 1 134
Q ss_pred HHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchhhhHHHHHHHHhhcccccCCCCee
Q 003796 141 MAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKKRKDLKKMCISSLTSEFPEDCKF 220 (795)
Q Consensus 141 ~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~~~Kk~~~~kK~lk~~f~~ef~~~~Kl 220 (795)
+++.||++++++|++ . ++.....+++.|...+.|. +.|++.+|.. ..+......++.. ...+. ...+
T Consensus 85 ~l~~~D~vl~Vvd~~--------~-~~~~~~~i~~~l~~~~~P~-ilvlNK~D~~-~~~~~~~~~l~~l-~~~~~-~~~~ 151 (301)
T 1ega_A 85 SIGDVELVIFVVEGT--------R-WTPDDEMVLNKLREGKAPV-ILAVNKVDNV-QEKADLLPHLQFL-ASQMN-FLDI 151 (301)
T ss_dssp CCCCEEEEEEEEETT--------C-CCHHHHHHHHHHHSSSSCE-EEEEESTTTC-CCHHHHHHHHHHH-HTTSC-CSEE
T ss_pred HHhcCCEEEEEEeCC--------C-CCHHHHHHHHHHHhcCCCE-EEEEECcccC-ccHHHHHHHHHHH-HHhcC-cCce
Confidence 567899999999997 3 6666778888888888885 4566888862 1122333333322 22222 2468
Q ss_pred EEeCC--HHHHHHHHHHHhhccc
Q 003796 221 YAADT--KDELHKFLWLFKEQRL 241 (795)
Q Consensus 221 f~l~~--~~E~~nL~R~Is~~k~ 241 (795)
+.+|. ...+..|+..|...-+
T Consensus 152 i~iSA~~g~~v~~l~~~i~~~l~ 174 (301)
T 1ega_A 152 VPISAETGLNVDTIAAIVRKHLP 174 (301)
T ss_dssp EECCTTTTTTHHHHHHHHHTTCC
T ss_pred EEEECCCCCCHHHHHHHHHHhCC
Confidence 88885 4557777777765443
No 42
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=94.90 E-value=0.11 Score=50.06 Aligned_cols=149 Identities=9% Similarity=0.109 Sum_probs=78.6
Q ss_pred CCEEEEEecCCCccChhhHHHHHHHhh-ccCC-CCCc----ceEEEecCceeeEEEEeCCCCC--hH-H-HHHHHhhhce
Q 003796 78 PPRVIVLFGLSASVNLNSVREDLLRQL-SSEG-TGAL----SSTVSSSKYRLRTSVLQAPHGD--LV-G-CMEMAKVADL 147 (795)
Q Consensus 78 pP~iV~Vvg~~~~~~~~sl~~~lvk~~-~~~~-~~~g----~~tv~~~r~k~Ritfie~~~~d--l~-~-~LD~aKvADl 147 (795)
.++-|+|+|.++.++. +|++.|+..- .... .+.| ..++.......+++|+.++ .. +. . .....+-||.
T Consensus 19 ~~~ki~v~G~~~~GKS-sli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~-G~~~~~~~~~~~~~~~~d~ 96 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKT-CLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTA-GQERFRKSMVQHYYRNVHA 96 (189)
T ss_dssp CEEEEEEECCTTSSHH-HHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECC-CSHHHHTTTHHHHHTTCCE
T ss_pred ceEEEEEECCCCCCHH-HHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECC-CchhhhhhhhHHHhcCCCE
Confidence 4567999999998876 7733333211 1111 1112 2233344445688999987 43 21 2 2345678999
Q ss_pred EEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchhh---hHHHHHHHHhhcccccCCCCeeEEeC
Q 003796 148 VAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKK---RKDLKKMCISSLTSEFPEDCKFYAAD 224 (795)
Q Consensus 148 Vll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~~~Kk---~~~~kK~lk~~f~~ef~~~~Klf~l~ 224 (795)
+|||+|++.. +....+..+-.+++..+...+.| ++.|++..|....+ ....++..+ .. +..+|.+|
T Consensus 97 iilv~D~~~~---~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~v~~~~~~~~~~-----~~--~~~~~~~S 165 (189)
T 1z06_A 97 VVFVYDMTNM---ASFHSLPAWIEECKQHLLANDIP-RILVGNKCDLRSAIQVPTDLAQKFAD-----TH--SMPLFETS 165 (189)
T ss_dssp EEEEEETTCH---HHHHTHHHHHHHHHHHCCCSCCC-EEEEEECTTCGGGCCSCHHHHHHHHH-----HT--TCCEEECC
T ss_pred EEEEEECcCH---HHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccccccceeCHHHHHHHHH-----Hc--CCEEEEEe
Confidence 9999999853 00001223344444444445666 66778888851111 111222221 11 35677777
Q ss_pred CH-----HHHHHHHHHHhhc
Q 003796 225 TK-----DELHKFLWLFKEQ 239 (795)
Q Consensus 225 ~~-----~E~~nL~R~Is~~ 239 (795)
.. ..+..+...|+..
T Consensus 166 a~~~~~~~~i~~l~~~l~~~ 185 (189)
T 1z06_A 166 AKNPNDNDHVEAIFMTLAHK 185 (189)
T ss_dssp SSSGGGGSCHHHHHHHHC--
T ss_pred CCcCCcccCHHHHHHHHHHH
Confidence 43 4466777666543
No 43
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=94.75 E-value=0.14 Score=47.76 Aligned_cols=146 Identities=11% Similarity=0.034 Sum_probs=79.5
Q ss_pred CCEEEEEecCCCccChhhHHHHHHHhhcc--CCCCCc----ceEEEecCceeeEEEEeCCCC-ChHHH-HHHHhhhceEE
Q 003796 78 PPRVIVLFGLSASVNLNSVREDLLRQLSS--EGTGAL----SSTVSSSKYRLRTSVLQAPHG-DLVGC-MEMAKVADLVA 149 (795)
Q Consensus 78 pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~--~~~~~g----~~tv~~~r~k~Ritfie~~~~-dl~~~-LD~aKvADlVl 149 (795)
+++-|+|+|.++.+.. +|++.|+..-.. ...+.| ..++.......+++++.+|-. ....+ ....+-||.+|
T Consensus 5 ~~~~i~v~G~~~~GKS-sli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i 83 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKS-SIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI 83 (170)
T ss_dssp EEEEEEEECCTTSSHH-HHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred cceEEEEECcCCCCHH-HHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEE
Confidence 4566999999998876 773333322100 111112 223333444578888988731 22332 34567899999
Q ss_pred EeeeCCCccccccccccChHHHHHHHHHHhcCCCc--eEEEeccCCcch-hh--hHHHHHHHHhhcccccCCCCeeEEeC
Q 003796 150 FVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPS--TAVLIRDLPTDL-KK--RKDLKKMCISSLTSEFPEDCKFYAAD 224 (795)
Q Consensus 150 l~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~--vigVl~~Ld~~~-Kk--~~~~kK~lk~~f~~ef~~~~Klf~l~ 224 (795)
+++|++.. ..|+. ...++..+..++.|. ++.|++..|... .. ....++..+. + +..+|.+|
T Consensus 84 ~v~d~~~~------~s~~~-~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~-----~--~~~~~~~S 149 (170)
T 1z0j_A 84 IVYDITKE------ETFST-LKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADS-----I--HAIFVETS 149 (170)
T ss_dssp EEEETTCH------HHHHH-HHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHH-----T--TCEEEECB
T ss_pred EEEECcCH------HHHHH-HHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHH-----c--CCEEEEEe
Confidence 99999853 22332 255677777776664 445578888511 11 1112222221 1 46788887
Q ss_pred CH--HHHHHHHHHHhh
Q 003796 225 TK--DELHKFLWLFKE 238 (795)
Q Consensus 225 ~~--~E~~nL~R~Is~ 238 (795)
.. ..+..|...|..
T Consensus 150 a~~~~~i~~l~~~i~~ 165 (170)
T 1z0j_A 150 AKNAININELFIEISR 165 (170)
T ss_dssp TTTTBSHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHH
Confidence 42 335555555543
No 44
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=94.67 E-value=0.25 Score=58.70 Aligned_cols=62 Identities=16% Similarity=0.178 Sum_probs=45.0
Q ss_pred eeEEEEeCCCC------ChHHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHH-HHHHhcCCCceEEEeccCCc
Q 003796 123 LRTSVLQAPHG------DLVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCL-SVFRSLGLPSTAVLIRDLPT 194 (795)
Q Consensus 123 ~Ritfie~~~~------dl~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L-~~l~aqG~P~vigVl~~Ld~ 194 (795)
..++|+..| + ....+...++-||+||+|+|++.+ +.....++| ..+...|.| ++.|++..|.
T Consensus 174 ~~l~LiDTP-Gl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~--------~s~~e~~~l~~~l~~~~~~-iiiVlNK~Dl 242 (695)
T 2j69_A 174 KGIEIVDSP-GLNDTEARNELSLGYVNNCHAILFVMRASQP--------CTLGERRYLENYIKGRGLT-VFFLVNAWDQ 242 (695)
T ss_dssp TTEEEEECC-CHHHHHTCHHHHTHHHHSSSEEEEEEETTST--------TCHHHHHHHHHHTTTSCCC-EEEEEECGGG
T ss_pred CCeEEEECC-CCCchhhHHHHHHHHHHhCCEEEEEEeCCCc--------cchhHHHHHHHHHHhhCCC-EEEEEECccc
Confidence 368888887 4 234456777889999999999854 444445555 466777888 8889998885
No 45
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=94.62 E-value=0.18 Score=46.74 Aligned_cols=108 Identities=11% Similarity=0.067 Sum_probs=61.0
Q ss_pred CEEEEEecCCCccChhhHHHHHHHhh-cc-CCCCCcc---eEEEecCceeeEEEEeCCC-CChHHH-HHHHhhhceEEEe
Q 003796 79 PRVIVLFGLSASVNLNSVREDLLRQL-SS-EGTGALS---STVSSSKYRLRTSVLQAPH-GDLVGC-MEMAKVADLVAFV 151 (795)
Q Consensus 79 P~iV~Vvg~~~~~~~~sl~~~lvk~~-~~-~~~~~g~---~tv~~~r~k~Ritfie~~~-~dl~~~-LD~aKvADlVll~ 151 (795)
++-|+|+|.++.+.. +|++.|+..- .. +..+.+. .++........+.|+.+|- .....+ -...+-||.+|++
T Consensus 3 ~~ki~v~G~~~~GKs-sli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 81 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKS-ALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV 81 (167)
T ss_dssp EEEEEEECSTTSSHH-HHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred eeEEEEECCCCCCHH-HHHHHHHcCCCCCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence 456899999998876 7733333211 00 1111111 1222333356788888863 123333 3456779999999
Q ss_pred eeCCCccccccccccC---hHHHHHHHHHHhcCCCceEEEeccCCc
Q 003796 152 ASASSFSEESMSYYID---SFGNQCLSVFRSLGLPSTAVLIRDLPT 194 (795)
Q Consensus 152 idas~g~~~~~~~~fe---~eg~e~L~~l~aqG~P~vigVl~~Ld~ 194 (795)
+|++.. ..|+ .+-.++++.+...+.| ++.|++..|.
T Consensus 82 ~d~~~~------~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl 120 (167)
T 1c1y_A 82 YSITAQ------STFNDLQDLREQILRVKDTEDVP-MILVGNKCDL 120 (167)
T ss_dssp EETTCH------HHHHTHHHHHHHHHHHHCCSCCC-EEEEEECTTC
T ss_pred EECCCH------HHHHHHHHHHHHHHHhhCcCCCc-EEEEEECccc
Confidence 999842 2233 2334444444445766 6677888885
No 46
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=94.60 E-value=0.095 Score=58.88 Aligned_cols=131 Identities=8% Similarity=0.093 Sum_probs=81.7
Q ss_pred CCCCEEEEEecCCCccChhhHHHHHHHhhccCCC---CC--------cceEEEecCceeeEEEEeCCCC-----------
Q 003796 76 ASPPRVIVLFGLSASVNLNSVREDLLRQLSSEGT---GA--------LSSTVSSSKYRLRTSVLQAPHG----------- 133 (795)
Q Consensus 76 ~~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~---~~--------g~~tv~~~r~k~Ritfie~~~~----------- 133 (795)
...+.-|+|+|.++.+.. +| +..|+..+. .. ...++... .++++++..+ .
T Consensus 192 ~~~~~ki~ivG~~~vGKS-sl----in~l~~~~~~~~~~~~gtt~~~~~~~~~~~--~~~~~l~DT~-G~~~~~~~~~~~ 263 (456)
T 4dcu_A 192 NEEVIQFCLIGRPNVGKS-SL----VNAMLGEERVIVSNVAGTTRDAVDTSFTYN--QQEFVIVDTA-GMRKKGKVYETT 263 (456)
T ss_dssp CTTCEEEEEECSTTSSHH-HH----HHHHHTSTTEEECC------CTTSEEEEET--TEEEEETTGG-GTTTBTTBCCCC
T ss_pred ccccceeEEecCCCCCHH-HH----HHHHhCCCccccCCCCCeEEEEEEEEEEEC--CceEEEEECC-CCCcCcccchHH
Confidence 455677999999998775 77 444433221 11 11223333 2578888776 3
Q ss_pred ChHH---HHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcc---hhhhHHHHHHHH
Q 003796 134 DLVG---CMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTD---LKKRKDLKKMCI 207 (795)
Q Consensus 134 dl~~---~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~~---~Kk~~~~kK~lk 207 (795)
.-.+ .+.+.+-||++|+++|++.+ +.....+++..+...|.|- +.|++..|.. .....+.++.++
T Consensus 264 e~~~~~~~~~~~~~ad~~llviD~~~~--------~~~~~~~~~~~~~~~~~~~-ilv~NK~Dl~~~~~~~~~~~~~~~~ 334 (456)
T 4dcu_A 264 EKYSVLRALKAIDRSEVVAVVLDGEEG--------IIEQDKRIAGYAHEAGKAV-VIVVNKWDAVDKDESTMKEFEENIR 334 (456)
T ss_dssp SHHHHHHHHHHHHHCSEEEEEEETTTC--------CCHHHHHHHHHHHHTTCEE-EEEEECGGGSCCCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCEEEEEEeCCCC--------cCHHHHHHHHHHHHcCCCE-EEEEEChhcCCCchHHHHHHHHHHH
Confidence 3333 34566789999999999954 7778889999999999875 4556766641 112234555555
Q ss_pred hhcccccCCCCeeEEeCC
Q 003796 208 SSLTSEFPEDCKFYAADT 225 (795)
Q Consensus 208 ~~f~~ef~~~~Klf~l~~ 225 (795)
+.+.. ..++.+|.+|.
T Consensus 335 ~~~~~--~~~~~~~~~SA 350 (456)
T 4dcu_A 335 DHFQF--LDYAPILFMSA 350 (456)
T ss_dssp HHCGG--GTTSCEEECCT
T ss_pred Hhccc--CCCCCEEEEcC
Confidence 55432 23578888883
No 47
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=94.48 E-value=1.4 Score=52.28 Aligned_cols=119 Identities=14% Similarity=0.105 Sum_probs=74.5
Q ss_pred CEEEEEecCCCccChhhHHHHHHHh---hccC----------C--C-C-C-------cceEEEecCceeeEEEEeCCC-C
Q 003796 79 PRVIVLFGLSASVNLNSVREDLLRQ---LSSE----------G--T-G-A-------LSSTVSSSKYRLRTSVLQAPH-G 133 (795)
Q Consensus 79 P~iV~Vvg~~~~~~~~sl~~~lvk~---~~~~----------~--~-~-~-------g~~tv~~~r~k~Ritfie~~~-~ 133 (795)
.+.|+|+|.++.++. +|++.|+.. +.+. + . + . ...++... ..++.|+.+|- .
T Consensus 10 ~~~I~IvG~~~aGKS-TL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~--~~~i~liDTPG~~ 86 (693)
T 2xex_A 10 TRNIGIMAHIDAGKT-TTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWE--GHRVNIIDTPGHV 86 (693)
T ss_dssp EEEEEEECCGGGTHH-HHHHHHHHHHSSCC-------------------------CCSEEEEEET--TEEEEEECCCCCS
T ss_pred ceEEEEECCCCCCHH-HHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEEC--CeeEEEEECcCCc
Confidence 467999998887765 675555532 1100 0 0 0 0 11222222 36788998873 2
Q ss_pred C-hHHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchhhhHHHHHHHHhh
Q 003796 134 D-LVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKKRKDLKKMCISS 209 (795)
Q Consensus 134 d-l~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~~~Kk~~~~kK~lk~~ 209 (795)
+ ...+..+.+.||.+|+++|++.| +...+..++..+..+|+|.+ .|++.+|........+...++..
T Consensus 87 df~~~~~~~l~~aD~~llVvDa~~g--------~~~~~~~~~~~~~~~~~p~i-lviNK~Dl~~~~~~~~~~~l~~~ 154 (693)
T 2xex_A 87 DFTVEVERSLRVLDGAVTVLDAQSG--------VEPQTETVWRQATTYGVPRI-VFVNKMDKLGANFEYSVSTLHDR 154 (693)
T ss_dssp SCCHHHHHHHHHCSEEEEEEETTTB--------SCHHHHHHHHHHHHTTCCEE-EEEECTTSTTCCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHCCEEEEEECCCCC--------CcHHHHHHHHHHHHcCCCEE-EEEECCCccccchHHHHHHHHHH
Confidence 2 34567788999999999999954 66778889999999999854 56888885112223344444444
No 48
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=94.48 E-value=0.18 Score=47.55 Aligned_cols=107 Identities=12% Similarity=0.011 Sum_probs=64.1
Q ss_pred CCCCEEEEEecCCCccChhhHHHHHHHhhccCCC------CCc----ceEEEecC-ceeeEEEEeCCCCC-hH-HHHHHH
Q 003796 76 ASPPRVIVLFGLSASVNLNSVREDLLRQLSSEGT------GAL----SSTVSSSK-YRLRTSVLQAPHGD-LV-GCMEMA 142 (795)
Q Consensus 76 ~~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~------~~g----~~tv~~~r-~k~Ritfie~~~~d-l~-~~LD~a 142 (795)
...+.-|+|+|.++.+.. +| +..|+.... +.| ..++..+. ...+++++.++-.. .. -.....
T Consensus 3 ~~~~~ki~v~G~~~~GKs-sl----~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~ 77 (178)
T 2hxs_A 3 HMRQLKIVVLGDGASGKT-SL----TTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYI 77 (178)
T ss_dssp CCCEEEEEEECCTTSSHH-HH----HHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHH
T ss_pred CCceEEEEEECcCCCCHH-HH----HHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHH
Confidence 455677999999998876 77 444432211 112 22333332 34688899886322 11 233456
Q ss_pred hhhceEEEeeeCCCccccccccccChHHHHHHHHHHh-----cCCCceEEEeccCCc
Q 003796 143 KVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRS-----LGLPSTAVLIRDLPT 194 (795)
Q Consensus 143 KvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~a-----qG~P~vigVl~~Ld~ 194 (795)
+-||.+|+|+|++.. ..|+. ...++..+.. .+.|.++.|++..|.
T Consensus 78 ~~~d~~i~v~d~~~~------~s~~~-~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl 127 (178)
T 2hxs_A 78 YGAQGVLLVYDITNY------QSFEN-LEDWYTVVKKVSEESETQPLVALVGNKIDL 127 (178)
T ss_dssp TTCSEEEEEEETTCH------HHHHT-HHHHHHHHHHHHHHHTCCCEEEEEEECGGG
T ss_pred hhCCEEEEEEECCCH------HHHHH-HHHHHHHHHHHhcccCCCCeEEEEEEcccc
Confidence 789999999999853 22322 1234444443 378888888998885
No 49
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=94.47 E-value=0.19 Score=48.46 Aligned_cols=136 Identities=13% Similarity=0.160 Sum_probs=74.1
Q ss_pred CCCCEEEEEecCCCccChhhHHHHHHHhhccCC-------CCCcceEEEecCceeeEEEEeCCC-CChHHHH-HHHhhhc
Q 003796 76 ASPPRVIVLFGLSASVNLNSVREDLLRQLSSEG-------TGALSSTVSSSKYRLRTSVLQAPH-GDLVGCM-EMAKVAD 146 (795)
Q Consensus 76 ~~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~-------~~~g~~tv~~~r~k~Ritfie~~~-~dl~~~L-D~aKvAD 146 (795)
..++.-|+|+|.++.+.. +| +..|+... .+.|...........+++|+..+- ..+..+. ...+-||
T Consensus 14 ~~~~~ki~v~G~~~~GKS-sl----~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 88 (199)
T 4bas_A 14 SKTKLQVVMCGLDNSGKT-TI----INQVKPAQSSSKHITATVGYNVETFEKGRVAFTVFDMGGAKKFRGLWETYYDNID 88 (199)
T ss_dssp --CEEEEEEECCTTSCHH-HH----HHHHSCCC----CCCCCSSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCS
T ss_pred CCCCcEEEEECCCCCCHH-HH----HHHHhcCCCcccccccccceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHhcCC
Confidence 345566999999998876 67 55554322 111422222222356888888762 2233333 3367799
Q ss_pred eEEEeeeCCCccccccccccChHHHHHHHHHHh----------cCCCceEEEeccCCc-chhhhHHHHHHHHhhcc-ccc
Q 003796 147 LVAFVASASSFSEESMSYYIDSFGNQCLSVFRS----------LGLPSTAVLIRDLPT-DLKKRKDLKKMCISSLT-SEF 214 (795)
Q Consensus 147 lVll~idas~g~~~~~~~~fe~eg~e~L~~l~a----------qG~P~vigVl~~Ld~-~~Kk~~~~kK~lk~~f~-~ef 214 (795)
.||||+|++.. ..|+.....+..+++. .+.| ++.|++..|. +......+.+.+..... ..
T Consensus 89 ~ii~v~D~~~~------~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~- 160 (199)
T 4bas_A 89 AVIFVVDSSDH------LRLCVVKSEIQAMLKHEDIRRELPGGGRVP-FLFFANKMDAAGAKTAAELVEILDLTTLMGD- 160 (199)
T ss_dssp EEEEEEETTCG------GGHHHHHHHHHHHHTSHHHHSBCTTSCBCC-EEEEEECTTSTTCCCHHHHHHHHTHHHHHTT-
T ss_pred EEEEEEECCcH------HHHHHHHHHHHHHHhChhhhhcccccCCCC-EEEEEECcCCCCCCCHHHHHHHhcchhhccC-
Confidence 99999999854 3355444444444433 1555 5667888885 11112334444332211 11
Q ss_pred CCCCeeEEeCC
Q 003796 215 PEDCKFYAADT 225 (795)
Q Consensus 215 ~~~~Klf~l~~ 225 (795)
.+..+|.+|.
T Consensus 161 -~~~~~~~~Sa 170 (199)
T 4bas_A 161 -HPFVIFASNG 170 (199)
T ss_dssp -SCEEEEECBT
T ss_pred -CeeEEEEeeC
Confidence 2567788774
No 50
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=94.36 E-value=0.15 Score=60.00 Aligned_cols=82 Identities=15% Similarity=0.229 Sum_probs=62.4
Q ss_pred eeeEEEEeCCC-CC-hHHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchhhh
Q 003796 122 RLRTSVLQAPH-GD-LVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKKR 199 (795)
Q Consensus 122 k~Ritfie~~~-~d-l~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~~~Kk~ 199 (795)
..+|.+|-+|- -| ...+.-++.++|-+|+||||..| ++..|..+++.+...|+|.+ .+++.+|......
T Consensus 66 ~~~iNlIDTPGH~DF~~Ev~raL~~~DgavlVVDa~~G--------V~~qT~~v~~~a~~~~lp~i-~~INKmDr~~a~~ 136 (638)
T 3j25_A 66 NTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDG--------VQAQTRILFHALRKMGIPTI-FFINKIDQNGIDL 136 (638)
T ss_dssp SCBCCCEECCCSSSTHHHHHHHHTTCSEEECCEESSCT--------TCSHHHHHHHHHHHHTCSCE-ECCEECCSSSCCS
T ss_pred CEEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEeCCCC--------CcHHHHHHHHHHHHcCCCeE-EEEeccccccCCH
Confidence 46899999973 34 45688899999999999999965 88899999999999999975 5678888421223
Q ss_pred HHHHHHHHhhccc
Q 003796 200 KDLKKMCISSLTS 212 (795)
Q Consensus 200 ~~~kK~lk~~f~~ 212 (795)
..+...++.+|..
T Consensus 137 ~~~~~~i~~~l~~ 149 (638)
T 3j25_A 137 STVYQDIKEKLSA 149 (638)
T ss_dssp HHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhCC
Confidence 3455556655543
No 51
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=94.18 E-value=0.23 Score=48.05 Aligned_cols=103 Identities=9% Similarity=0.078 Sum_probs=59.9
Q ss_pred EEEEEecCCCccChhhHHHHHHHhhccCCC------CCc----ceEEEecCceeeEEEEeCCCC-ChHH-HHHHHhhhce
Q 003796 80 RVIVLFGLSASVNLNSVREDLLRQLSSEGT------GAL----SSTVSSSKYRLRTSVLQAPHG-DLVG-CMEMAKVADL 147 (795)
Q Consensus 80 ~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~------~~g----~~tv~~~r~k~Ritfie~~~~-dl~~-~LD~aKvADl 147 (795)
+-|+|+|.++.++. +| +..|+.... +.| ..++.....+.+++++.++-. .... .....+-||.
T Consensus 27 ~ki~vvG~~~~GKS-sL----i~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ 101 (192)
T 2il1_A 27 LQVIIIGSRGVGKT-SL----MERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKG 101 (192)
T ss_dssp EEEEEECSTTSSHH-HH----HHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSE
T ss_pred eEEEEECCCCCCHH-HH----HHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCE
Confidence 34899999998876 77 555543221 112 223333434467888988732 2333 3456688999
Q ss_pred EEEeeeCCCccccccccccChHHHHHHHHHHhcCC--CceEEEeccCCc
Q 003796 148 VAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGL--PSTAVLIRDLPT 194 (795)
Q Consensus 148 Vll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~--P~vigVl~~Ld~ 194 (795)
+|||+|++.+ ..|+. ...++..++.... ..++.|++..|.
T Consensus 102 iilV~D~~~~------~s~~~-~~~~~~~i~~~~~~~~piilV~NK~Dl 143 (192)
T 2il1_A 102 IILVYDITKK------ETFDD-LPKWMKMIDKYASEDAELLLVGNKLDC 143 (192)
T ss_dssp EEEEEETTCH------HHHHT-HHHHHHHHHHHSCTTCEEEEEEECGGG
T ss_pred EEEEEECcCH------HHHHH-HHHHHHHHHHhcCCCCcEEEEEECccc
Confidence 9999999853 22322 1234455555432 235667888775
No 52
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=94.05 E-value=0.4 Score=55.34 Aligned_cols=88 Identities=13% Similarity=0.114 Sum_probs=64.1
Q ss_pred cceEEEecCceeeEEEEeCCC-CC-hHHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEe
Q 003796 112 LSSTVSSSKYRLRTSVLQAPH-GD-LVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLI 189 (795)
Q Consensus 112 g~~tv~~~r~k~Ritfie~~~-~d-l~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl 189 (795)
..+++.-. ..+|.+|-+|- -| ...+.-+..++|-+|+||||..| ++..|..+++.+..+|+|.+ .++
T Consensus 91 ~~~~~~~~--~~~iNlIDTPGHvDF~~Ev~raL~~~DgAvlVvda~~G--------V~~qT~~v~~~a~~~~lp~i-~fI 159 (548)
T 3vqt_A 91 SVMQFPYR--DRVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKG--------VEAQTRKLMDVCRMRATPVM-TFV 159 (548)
T ss_dssp TEEEEEET--TEEEEEECCCCGGGCSHHHHHHHHSCSEEEEEEETTTB--------SCHHHHHHHHHHHHTTCCEE-EEE
T ss_pred ceEEEEEC--CEEEEEEeCCCcHHHHHHHHHHHHhcCceEEEeecCCC--------cccccHHHHHHHHHhCCceE-EEE
Confidence 34445443 47899999983 23 34588888999999999999965 89999999999999999975 567
Q ss_pred ccCCcchhhhHHHHHHHHhhc
Q 003796 190 RDLPTDLKKRKDLKKMCISSL 210 (795)
Q Consensus 190 ~~Ld~~~Kk~~~~kK~lk~~f 210 (795)
+.+|.....-..+...++..|
T Consensus 160 NK~Dr~~ad~~~~~~~i~~~l 180 (548)
T 3vqt_A 160 NKMDREALHPLDVMADIEQHL 180 (548)
T ss_dssp ECTTSCCCCHHHHHHHHHHHH
T ss_pred ecccchhcchhHhhhhhhhhc
Confidence 888842122234555555554
No 53
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=94.00 E-value=0.77 Score=44.90 Aligned_cols=73 Identities=18% Similarity=0.237 Sum_probs=44.4
Q ss_pred CCEEEEEecCCCccChhhHHHHHHHhhccCCC-----CC--cceEEEecCc-eeeEEEEeCCCCC--hHH-HHHH-Hhhh
Q 003796 78 PPRVIVLFGLSASVNLNSVREDLLRQLSSEGT-----GA--LSSTVSSSKY-RLRTSVLQAPHGD--LVG-CMEM-AKVA 145 (795)
Q Consensus 78 pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~-----~~--g~~tv~~~r~-k~Ritfie~~~~d--l~~-~LD~-aKvA 145 (795)
.+.-|+|+|.++.+.. +| +..|+.... +. ...++..... ..+++++..| .. +.+ +... .+-|
T Consensus 6 ~~~ki~vvG~~~~GKT-sl----i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~-G~~~~~~~~~~~~~~~~ 79 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKT-LL----FVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLP-GHESLRFQLLDRFKSSA 79 (214)
T ss_dssp --CEEEEECSTTSSHH-HH----HHHHHHSCCCCBCCCCSCEEEEEECSSTTCCEEEEEECC-CCHHHHHHHHHHHGGGE
T ss_pred CCCEEEEECCCCCCHH-HH----HHHHhCCCcccccCCcceeeEEEEecCCCccEEEEEECC-CChhHHHHHHHHHHhhC
Confidence 3456899999998876 67 444432221 11 2223333321 3678999987 43 333 4443 6789
Q ss_pred ceEEEeeeCCC
Q 003796 146 DLVAFVASASS 156 (795)
Q Consensus 146 DlVll~idas~ 156 (795)
|.+||++|++.
T Consensus 80 ~~~i~v~d~~~ 90 (214)
T 2fh5_B 80 RAVVFVVDSAA 90 (214)
T ss_dssp EEEEEEEETTT
T ss_pred CEEEEEEECCC
Confidence 99999999974
No 54
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=93.90 E-value=0.66 Score=44.91 Aligned_cols=147 Identities=10% Similarity=-0.026 Sum_probs=78.0
Q ss_pred CCCEEEEEecCCCccChhhHHHHHHHhhccCCCCC-----cceEEEecCceeeEEEEeCCCC-ChHHH-HHHHhhhceEE
Q 003796 77 SPPRVIVLFGLSASVNLNSVREDLLRQLSSEGTGA-----LSSTVSSSKYRLRTSVLQAPHG-DLVGC-MEMAKVADLVA 149 (795)
Q Consensus 77 ~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~~-----g~~tv~~~r~k~Ritfie~~~~-dl~~~-LD~aKvADlVl 149 (795)
..++-|+|+|+++.+.. +| +..|+...... |...........+++++.+|-. .+..+ ....+-||.+|
T Consensus 27 ~~~~ki~v~G~~~vGKS-sL----i~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 101 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKT-TI----LYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLI 101 (192)
T ss_dssp TSCEEEEEEESTTSSHH-HH----HHHHCSSCCEEEEEETTEEEEEEEETTEEEEEEECC-----CTTHHHHHHTCCEEE
T ss_pred CCccEEEEECCCCCCHH-HH----HHHHHhCCccccCCcCceeEEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 44567999999998875 77 55554322211 3211111112468888988731 22222 24567899999
Q ss_pred EeeeCCCccccccccccChHHHHHHHHHHhc---CCCceEEEeccCCcchh-hhHHHHHHHHhhcccccCCCCeeEEeCC
Q 003796 150 FVASASSFSEESMSYYIDSFGNQCLSVFRSL---GLPSTAVLIRDLPTDLK-KRKDLKKMCISSLTSEFPEDCKFYAADT 225 (795)
Q Consensus 150 l~idas~g~~~~~~~~fe~eg~e~L~~l~aq---G~P~vigVl~~Ld~~~K-k~~~~kK~lk~~f~~ef~~~~Klf~l~~ 225 (795)
+|+|++.. ..|+.....+..+++.. +.| ++.|++..|.... ....+.+.+...+... .+..+|.+|.
T Consensus 102 lv~D~~~~------~s~~~~~~~l~~~~~~~~~~~~p-iilv~NK~Dl~~~~~~~~i~~~~~~~~~~~--~~~~~~~~SA 172 (192)
T 2b6h_A 102 FVVDSNDR------ERVQESADELQKMLQEDELRDAV-LLVFANKQDMPNAMPVSELTDKLGLQHLRS--RTWYVQATCA 172 (192)
T ss_dssp EEEETTCG------GGHHHHHHHHHHHHTCGGGTTCE-EEEEEECTTSTTCCCHHHHHHHTTGGGCSS--CCEEEEECBT
T ss_pred EEEECCCH------HHHHHHHHHHHHHhcccccCCCe-EEEEEECCCCCCCCCHHHHHHHhCcccccC--CceEEEECcC
Confidence 99999853 33555445555555443 444 5667888885111 1233333332221111 2345777773
Q ss_pred --HHHHHHHHHHHh
Q 003796 226 --KDELHKFLWLFK 237 (795)
Q Consensus 226 --~~E~~nL~R~Is 237 (795)
...+..|...|.
T Consensus 173 ~~g~gi~~l~~~l~ 186 (192)
T 2b6h_A 173 TQGTGLYDGLDWLS 186 (192)
T ss_dssp TTTBTHHHHHHHHH
T ss_pred CCcCCHHHHHHHHH
Confidence 223445555444
No 55
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=93.83 E-value=0.5 Score=43.34 Aligned_cols=107 Identities=7% Similarity=0.032 Sum_probs=59.4
Q ss_pred CEEEEEecCCCccChhhHHHHHHHhhc-c-CCCCCc---ceEEEecCceeeEEEEeCCCC-ChHHHHH-HHhhhceEEEe
Q 003796 79 PRVIVLFGLSASVNLNSVREDLLRQLS-S-EGTGAL---SSTVSSSKYRLRTSVLQAPHG-DLVGCME-MAKVADLVAFV 151 (795)
Q Consensus 79 P~iV~Vvg~~~~~~~~sl~~~lvk~~~-~-~~~~~g---~~tv~~~r~k~Ritfie~~~~-dl~~~LD-~aKvADlVll~ 151 (795)
+.-|+|+|.++.+.. +|++.++..-. . +..+.+ ..++........++++.+|.. ....+.. ..+-||.+|++
T Consensus 3 ~~~i~v~G~~~~GKs-sl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKS-ALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 81 (166)
T ss_dssp EEEEEEEESTTSSHH-HHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred eeEEEEECCCCCCHH-HHHHHHHhCcCccccCCccceEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence 345899999988876 67333332210 0 011111 122333434567888988732 2344443 67889999999
Q ss_pred eeCCCccccccccccChHHHHHHHHHHh----cCCCceEEEeccCCc
Q 003796 152 ASASSFSEESMSYYIDSFGNQCLSVFRS----LGLPSTAVLIRDLPT 194 (795)
Q Consensus 152 idas~g~~~~~~~~fe~eg~e~L~~l~a----qG~P~vigVl~~Ld~ 194 (795)
+|++.. ..|+.. .+++..+.. .+.| ++.|++..|.
T Consensus 82 ~d~~~~------~~~~~~-~~~~~~i~~~~~~~~~p-~iiv~nK~Dl 120 (166)
T 2ce2_X 82 FAINNT------KSFEDI-HQYREQIKRVKDSDDVP-MVLVGNKSDL 120 (166)
T ss_dssp EETTCH------HHHHHH-HHHHHHHHHHHTCSCCC-EEEEEECTTC
T ss_pred EECCCH------HHHHHH-HHHHHHHHHhcCCCCCc-EEEEEEchhh
Confidence 999842 223222 333333333 3665 5677888874
No 56
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=93.78 E-value=0.76 Score=49.21 Aligned_cols=133 Identities=9% Similarity=0.019 Sum_probs=75.6
Q ss_pred EEEEEecCCCccChhhHHHHHHHhhccCCCCC-----cceEEEecCceeeEEEEeCCC-CChHH-HHHHHhhhceEEEee
Q 003796 80 RVIVLFGLSASVNLNSVREDLLRQLSSEGTGA-----LSSTVSSSKYRLRTSVLQAPH-GDLVG-CMEMAKVADLVAFVA 152 (795)
Q Consensus 80 ~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~~-----g~~tv~~~r~k~Ritfie~~~-~dl~~-~LD~aKvADlVll~i 152 (795)
+-|+|+|.++.++. +| +..|+...... +...........+++|+..+- ..+.. ....++-||.||||+
T Consensus 166 ~kI~ivG~~~vGKS-sL----l~~l~~~~~~~~~pT~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~ 240 (329)
T 3o47_A 166 MRILMVGLDAAGKT-TI----LYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 240 (329)
T ss_dssp EEEEEEESTTSSHH-HH----HHHTCSSCCEEEEEETTEEEEEEEETTEEEEEEECC-----CCSHHHHHTTEEEEEEEE
T ss_pred ceEEEECCCCccHH-HH----HHHHhCCCCCCcccccceEEEEEecCcEEEEEEECCCCHhHHHHHHHHhccCCEEEEEE
Confidence 36999999998886 67 66665443221 222222221246788898862 12222 334578899999999
Q ss_pred eCCCccccccccccChHHHHHHHHHHhcCCC--ceEEEeccCCc-chhhhHHHHHHHHhhcccccCCCCeeEEeCC
Q 003796 153 SASSFSEESMSYYIDSFGNQCLSVFRSLGLP--STAVLIRDLPT-DLKKRKDLKKMCISSLTSEFPEDCKFYAADT 225 (795)
Q Consensus 153 das~g~~~~~~~~fe~eg~e~L~~l~aqG~P--~vigVl~~Ld~-~~Kk~~~~kK~lk~~f~~ef~~~~Klf~l~~ 225 (795)
|++.. ..|+.....+..+++..+.+ .++.|++..|. +......+.+.+...+.. ..+..+|.+|.
T Consensus 241 D~~~~------~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~~~~--~~~~~~~~vSA 308 (329)
T 3o47_A 241 DSNDR------ERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR--HRNWYIQATCA 308 (329)
T ss_dssp ETTCS------SSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTCTTCC--SSCEEEEECBT
T ss_pred ECCch------HHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHHHHHHHhchhhhh--cCCCEEEEEEC
Confidence 99742 34666666677777665433 25667888885 111223344433322211 12456777774
No 57
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=93.76 E-value=0.8 Score=46.82 Aligned_cols=89 Identities=11% Similarity=0.053 Sum_probs=53.0
Q ss_pred CCCCEEEEEecCCCccChhhHHHHHHHhhccCCCCC----------cceEEEecCceeeEEEEeCCCCC-----------
Q 003796 76 ASPPRVIVLFGLSASVNLNSVREDLLRQLSSEGTGA----------LSSTVSSSKYRLRTSVLQAPHGD----------- 134 (795)
Q Consensus 76 ~~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~~----------g~~tv~~~r~k~Ritfie~~~~d----------- 134 (795)
..++.-|++||.++.+.. +| +..+....... .+.........++++|+..| .-
T Consensus 18 ~~~~l~I~lvG~~g~GKS-Sl----in~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~liDTP-G~~~~~~~~~~~~ 91 (247)
T 3lxw_A 18 GESTRRLILVGRTGAGKS-AT----GNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTP-DIFSSQVSKTDPG 91 (247)
T ss_dssp --CEEEEEEESSTTSSHH-HH----HHHHHTSCCC---------CCSCEEEEEEETTEEEEEEECC-SCSSTTHHHHSTT
T ss_pred CCCceEEEEECCCCCcHH-HH----HHHHhCCCCccccCCCCCccccEEEEEEEECCcEEEEEECC-CCCCCCCCcHHHH
Confidence 456778999999998886 77 44443333211 11112221124689999887 41
Q ss_pred hHHHHHHH----hhhceEEEeeeCCCccccccccccChHHHHHHHHHHh
Q 003796 135 LVGCMEMA----KVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRS 179 (795)
Q Consensus 135 l~~~LD~a----KvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~a 179 (795)
+..+..+. .-||.+|+|+|++. |..+...++..++.
T Consensus 92 ~~~i~~~~~~~~~~~d~il~V~d~~~---------~~~~~~~~~~~l~~ 131 (247)
T 3lxw_A 92 CEERGHCYLLSAPGPHALLLVTQLGR---------FTAQDQQAVRQVRD 131 (247)
T ss_dssp SHHHHHHHHHHTTCCSEEEEEEETTB---------CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCEEEEEEeCCC---------CCHHHHHHHHHHHH
Confidence 22233333 88999999999872 55555666666655
No 58
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=93.71 E-value=1.1 Score=41.37 Aligned_cols=103 Identities=11% Similarity=0.042 Sum_probs=60.4
Q ss_pred EEEecCCCccChhhHHHHHHHh-hccCCCCCcc--eEEEecCceeeEEEEeCCCC-ChHHHH-HHHhhhceEEEeeeCCC
Q 003796 82 IVLFGLSASVNLNSVREDLLRQ-LSSEGTGALS--STVSSSKYRLRTSVLQAPHG-DLVGCM-EMAKVADLVAFVASASS 156 (795)
Q Consensus 82 V~Vvg~~~~~~~~sl~~~lvk~-~~~~~~~~g~--~tv~~~r~k~Ritfie~~~~-dl~~~L-D~aKvADlVll~idas~ 156 (795)
|+|+|.++.+.. +|++.++.. +.....+.|. .++.. ...++.++..|-. .+..+. ...+-||.+|+++|++.
T Consensus 3 i~~~G~~~~GKs-sl~~~l~~~~~~~~~~t~~~~~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 79 (164)
T 1r8s_A 3 ILMVGLDAAGKT-TILYKLKLGEIVTTIPTIGFNVETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND 79 (164)
T ss_dssp EEEECSTTSSHH-HHHHHHHHHCSSCCCCCSSCCEEEEEC--SSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTC
T ss_pred EEEECCCCCCHH-HHHHHHHcCCcCcccCcCceeEEEEEE--CCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEECCC
Confidence 789999998875 674443321 1221112132 22332 2468899988732 244433 35678999999999985
Q ss_pred ccccccccccChHHHHHHHHHHhc---CCCceEEEeccCCc
Q 003796 157 FSEESMSYYIDSFGNQCLSVFRSL---GLPSTAVLIRDLPT 194 (795)
Q Consensus 157 g~~~~~~~~fe~eg~e~L~~l~aq---G~P~vigVl~~Ld~ 194 (795)
. ..|+.....+..++... +.| ++.|++..|.
T Consensus 80 ~------~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl 113 (164)
T 1r8s_A 80 R------ERVNEAREELMRMLAEDELRDAV-LLVFANKQDL 113 (164)
T ss_dssp G------GGHHHHHHHHHHHHTCGGGTTCE-EEEEEECTTS
T ss_pred H------HHHHHHHHHHHHHHhchhhcCCe-EEEEEECcCC
Confidence 3 33554444455555433 443 5667888885
No 59
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=93.70 E-value=0.4 Score=44.41 Aligned_cols=143 Identities=10% Similarity=0.051 Sum_probs=77.7
Q ss_pred CCCEEEEEecCCCccChhhHHHHHHHhhccCC------CCCc----ceEEEecCceeeEEEEeCCCC-ChHH-HHHHHhh
Q 003796 77 SPPRVIVLFGLSASVNLNSVREDLLRQLSSEG------TGAL----SSTVSSSKYRLRTSVLQAPHG-DLVG-CMEMAKV 144 (795)
Q Consensus 77 ~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~------~~~g----~~tv~~~r~k~Ritfie~~~~-dl~~-~LD~aKv 144 (795)
..++-|+|+|.++.+.. +| +..|+... .+.| ..++.......+++++.+|-. .... .....+-
T Consensus 4 ~~~~~i~v~G~~~~GKs-sl----i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~ 78 (170)
T 1r2q_A 4 ICQFKLVLLGESAVGKS-SL----VLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRG 78 (170)
T ss_dssp EEEEEEEEECSTTSSHH-HH----HHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTT
T ss_pred CceEEEEEECCCCCCHH-HH----HHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccC
Confidence 34566999999998876 67 44443211 1112 223333434568888888632 2222 3445677
Q ss_pred hceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCce--EEEeccCCcchhh---hHHHHHHHHhhcccccCCCCe
Q 003796 145 ADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPST--AVLIRDLPTDLKK---RKDLKKMCISSLTSEFPEDCK 219 (795)
Q Consensus 145 ADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~v--igVl~~Ld~~~Kk---~~~~kK~lk~~f~~ef~~~~K 219 (795)
||.+|+++|++.. ..|+. ..++|..+..+..+.+ +.|++..|....+ ....++..+. .+..
T Consensus 79 ~d~~i~v~d~~~~------~s~~~-~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~-------~~~~ 144 (170)
T 1r2q_A 79 AQAAIVVYDITNE------ESFAR-AKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADD-------NSLL 144 (170)
T ss_dssp CSEEEEEEETTCH------HHHHH-HHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHH-------TTCE
T ss_pred CCEEEEEEECCCH------HHHHH-HHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHH-------cCCe
Confidence 9999999999853 22432 2345566665544443 3445887751111 1223332222 1457
Q ss_pred eEEeCCH--HHHHHHHHHHhh
Q 003796 220 FYAADTK--DELHKFLWLFKE 238 (795)
Q Consensus 220 lf~l~~~--~E~~nL~R~Is~ 238 (795)
+|.+|.. ..+..|...|..
T Consensus 145 ~~~~Sa~~g~gi~~l~~~i~~ 165 (170)
T 1r2q_A 145 FMETSAKTSMNVNEIFMAIAK 165 (170)
T ss_dssp EEECCTTTCTTHHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHH
Confidence 7777742 335555555544
No 60
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=93.66 E-value=0.37 Score=46.56 Aligned_cols=141 Identities=9% Similarity=0.019 Sum_probs=79.0
Q ss_pred CEEEEEecCCCccChhhHHHHHHHhhccCC------CCCc----ceEEEecCceeeEEEEeCCCCC-hHH-HHHHHhhhc
Q 003796 79 PRVIVLFGLSASVNLNSVREDLLRQLSSEG------TGAL----SSTVSSSKYRLRTSVLQAPHGD-LVG-CMEMAKVAD 146 (795)
Q Consensus 79 P~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~------~~~g----~~tv~~~r~k~Ritfie~~~~d-l~~-~LD~aKvAD 146 (795)
++-|+|+|.++.+.. +| +..|+... .+.| ..++.......+++|+.+|-.. +.. .....+-||
T Consensus 23 ~~ki~vvG~~~~GKS-sl----i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 97 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKS-SI----VCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSA 97 (192)
T ss_dssp EEEEEEEECTTSSHH-HH----HHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCS
T ss_pred ceEEEEECcCCCCHH-HH----HHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCC
Confidence 456999999998876 77 44443322 1112 2223334345688999887321 222 345678899
Q ss_pred eEEEeeeCCCccccccccccChHHHHHHHHHHhcCC--CceEEEeccCCcch-hh--hHHHHHHHHhhcccccCCCCeeE
Q 003796 147 LVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGL--PSTAVLIRDLPTDL-KK--RKDLKKMCISSLTSEFPEDCKFY 221 (795)
Q Consensus 147 lVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~--P~vigVl~~Ld~~~-Kk--~~~~kK~lk~~f~~ef~~~~Klf 221 (795)
.+|+++|++.. ..|+. ...++..++.++. ..++.|++..|... +. ....++.++. + +..+|
T Consensus 98 ~iilV~d~~~~------~s~~~-~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~-----~--~~~~~ 163 (192)
T 2fg5_A 98 AAVIVYDITKQ------DSFYT-LKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAES-----I--GAIVV 163 (192)
T ss_dssp EEEEEEETTCT------HHHHH-HHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHT-----T--TCEEE
T ss_pred EEEEEEeCCCH------HHHHH-HHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHH-----c--CCEEE
Confidence 99999999853 22332 2455666666542 23566778877511 11 1233333332 1 46788
Q ss_pred EeCC--HHHHHHHHHHHhh
Q 003796 222 AADT--KDELHKFLWLFKE 238 (795)
Q Consensus 222 ~l~~--~~E~~nL~R~Is~ 238 (795)
.+|. ...+..|...|..
T Consensus 164 ~~Sa~~~~gi~~l~~~l~~ 182 (192)
T 2fg5_A 164 ETSAKNAINIEELFQGISR 182 (192)
T ss_dssp ECBTTTTBSHHHHHHHHHH
T ss_pred EEeCCCCcCHHHHHHHHHH
Confidence 8874 2345555555554
No 61
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=93.64 E-value=0.7 Score=44.28 Aligned_cols=142 Identities=13% Similarity=0.137 Sum_probs=77.5
Q ss_pred CCEEEEEecCCCccChhhHHHHHHHhhccCC--C-----CCcce--EEEecCceeeEEEEeCCC-CChHHH-HHHHhhhc
Q 003796 78 PPRVIVLFGLSASVNLNSVREDLLRQLSSEG--T-----GALSS--TVSSSKYRLRTSVLQAPH-GDLVGC-MEMAKVAD 146 (795)
Q Consensus 78 pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~--~-----~~g~~--tv~~~r~k~Ritfie~~~-~dl~~~-LD~aKvAD 146 (795)
.+.-|+|+|.++.+.. +| +..|+... . +.|.. ++... ..++.++.++- ..+..+ ....+-||
T Consensus 20 ~~~ki~v~G~~~~GKS-sl----i~~l~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~d 92 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKT-TI----INKLKPSNAQSQNILPTIGFSIEKFKSS--SLSFTVFDMSGQGRYRNLWEHYYKEGQ 92 (190)
T ss_dssp -CEEEEEEECTTSSHH-HH----HHHTSCGGGCCSSCCCCSSEEEEEEECS--SCEEEEEEECCSTTTGGGGGGGGGGCS
T ss_pred CccEEEEECCCCCCHH-HH----HHHHhcCCCCCCCcCCccceeEEEEEEC--CEEEEEEECCCCHHHHHHHHHHHhcCC
Confidence 4566999999998876 67 55554322 1 11322 22223 36788888863 233333 24567899
Q ss_pred eEEEeeeCCCccccccccccChHHHHHHHHHHhc-----CCCceEEEeccCCcchh-hhHHHHHHHH-hhcccccCCCCe
Q 003796 147 LVAFVASASSFSEESMSYYIDSFGNQCLSVFRSL-----GLPSTAVLIRDLPTDLK-KRKDLKKMCI-SSLTSEFPEDCK 219 (795)
Q Consensus 147 lVll~idas~g~~~~~~~~fe~eg~e~L~~l~aq-----G~P~vigVl~~Ld~~~K-k~~~~kK~lk-~~f~~ef~~~~K 219 (795)
.+|+|+|++.. ..|+.....+..+++.. +.| ++.|++..|.... .....++.+. ..+. ..+..
T Consensus 93 ~ii~v~d~~~~------~s~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~~~---~~~~~ 162 (190)
T 2h57_A 93 AIIFVIDSSDR------LRMVVAKEELDTLLNHPDIKHRRIP-ILFFANKMDLRDAVTSVKVSQLLCLENIK---DKPWH 162 (190)
T ss_dssp EEEEEEETTCH------HHHHHHHHHHHHHHHSTTTTTSCCC-EEEEEECTTSTTCCCHHHHHHHHTGGGCC---SSCEE
T ss_pred EEEEEEECCCH------HHHHHHHHHHHHHHhChhhccCCCe-EEEEEeCcCcccCCCHHHHHHHhChhhcc---CCceE
Confidence 99999999853 23554444555555543 444 5677888885111 1233444332 1111 12567
Q ss_pred eEEeCCH--HHHHHHHHHH
Q 003796 220 FYAADTK--DELHKFLWLF 236 (795)
Q Consensus 220 lf~l~~~--~E~~nL~R~I 236 (795)
+|.+|.. ..+..|...|
T Consensus 163 ~~~~Sa~~~~gi~~l~~~l 181 (190)
T 2h57_A 163 ICASDAIKGEGLQEGVDWL 181 (190)
T ss_dssp EEECBTTTTBTHHHHHHHH
T ss_pred EEEccCCCCcCHHHHHHHH
Confidence 8888842 2344444444
No 62
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.56 E-value=0.43 Score=46.73 Aligned_cols=104 Identities=10% Similarity=0.108 Sum_probs=62.2
Q ss_pred CEEEEEecCCCccChhhHHHHHHHhhccCCCC------Ccc---eEEEecCceeeEEEEeCCCC-ChHHH-HHHHhhhce
Q 003796 79 PRVIVLFGLSASVNLNSVREDLLRQLSSEGTG------ALS---STVSSSKYRLRTSVLQAPHG-DLVGC-MEMAKVADL 147 (795)
Q Consensus 79 P~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~------~g~---~tv~~~r~k~Ritfie~~~~-dl~~~-LD~aKvADl 147 (795)
++-|+|+|.++.++. +| +..|...... .+. ..+.......+++++.+|-. ....+ ....+-||.
T Consensus 25 ~~ki~vvG~~~~GKS-sl----i~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 99 (207)
T 2fv8_A 25 RKKLVVVGDGACGKT-CL----LIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDV 99 (207)
T ss_dssp EEEEEEEECTTSSHH-HH----HHHHHHSSCC-------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCE
T ss_pred CcEEEEECcCCCCHH-HH----HHHHhcCCCCCcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCE
Confidence 456999999998886 77 4444332211 111 22333444467888888631 12222 234567999
Q ss_pred EEEeeeCCCccccccccccChHHHHHHHHHHhc--CCCceEEEeccCCc
Q 003796 148 VAFVASASSFSEESMSYYIDSFGNQCLSVFRSL--GLPSTAVLIRDLPT 194 (795)
Q Consensus 148 Vll~idas~g~~~~~~~~fe~eg~e~L~~l~aq--G~P~vigVl~~Ld~ 194 (795)
+|+++|++.. ..|+.....++..++.. +.| ++.|++..|.
T Consensus 100 ~i~v~d~~~~------~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl 141 (207)
T 2fv8_A 100 ILMCFSVDSP------DSLENIPEKWVPEVKHFCPNVP-IILVANKKDL 141 (207)
T ss_dssp EEEEEETTCH------HHHHHHHHTHHHHHHHHSTTCC-EEEEEECGGG
T ss_pred EEEEEECCCH------HHHHHHHHHHHHHHHHhCCCCC-EEEEEEchhh
Confidence 9999999853 23444435566666665 666 5667888775
No 63
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=93.54 E-value=0.51 Score=44.70 Aligned_cols=111 Identities=12% Similarity=0.091 Sum_probs=62.8
Q ss_pred CCCCEEEEEecCCCccChhhHHHHHHHhhc--cCCCCCc---ceEEEecCceeeEEEEeCCCCC-hHH-HHHHHhhhceE
Q 003796 76 ASPPRVIVLFGLSASVNLNSVREDLLRQLS--SEGTGAL---SSTVSSSKYRLRTSVLQAPHGD-LVG-CMEMAKVADLV 148 (795)
Q Consensus 76 ~~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~--~~~~~~g---~~tv~~~r~k~Ritfie~~~~d-l~~-~LD~aKvADlV 148 (795)
..+.+-|+|+|.++.+.. +|++.|+.... .+..+.+ ...+........++++.++-.. ... .-...+-||.+
T Consensus 15 ~~~~~ki~v~G~~~~GKS-sl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 93 (183)
T 3kkq_A 15 NLPTYKLVVVGDGGVGKS-ALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGF 93 (183)
T ss_dssp CCCEEEEEEECSTTSSHH-HHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEE
T ss_pred CCCceEEEEECCCCCCHH-HHHHHHHhCCCCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEE
Confidence 455677999999998876 67433332210 0111112 2223334344567778876311 222 23346779999
Q ss_pred EEeeeCCCcccccccccc---ChHHHHHHHHHHhcCCCceEEEeccCCc
Q 003796 149 AFVASASSFSEESMSYYI---DSFGNQCLSVFRSLGLPSTAVLIRDLPT 194 (795)
Q Consensus 149 ll~idas~g~~~~~~~~f---e~eg~e~L~~l~aqG~P~vigVl~~Ld~ 194 (795)
|+++|++.. ..| ..+-.++++.+...+.| ++.|++..|.
T Consensus 94 i~v~d~~~~------~s~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl 135 (183)
T 3kkq_A 94 LIVYSVTDK------ASFEHVDRFHQLILRVKDRESFP-MILVANKVDL 135 (183)
T ss_dssp EEEEETTCH------HHHHTHHHHHHHHHHHHTSSCCC-EEEEEECTTC
T ss_pred EEEEECCCH------HHHHHHHHHHHHHHHhcCCCCCc-EEEEEECCCc
Confidence 999999853 223 33444555555556666 5667888774
No 64
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=93.46 E-value=0.65 Score=46.80 Aligned_cols=144 Identities=10% Similarity=0.048 Sum_probs=74.8
Q ss_pred CCCEEEEEecCCCccChhhHHHHHHHhhccCCCCC----------cce--EEEecCceeeEEEEeCCCCC----------
Q 003796 77 SPPRVIVLFGLSASVNLNSVREDLLRQLSSEGTGA----------LSS--TVSSSKYRLRTSVLQAPHGD---------- 134 (795)
Q Consensus 77 ~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~~----------g~~--tv~~~r~k~Ritfie~~~~d---------- 134 (795)
..++-|+|+|.++.+.. +| ++.|++..... .+. ++... .++++++..| .-
T Consensus 27 ~~~~~i~lvG~~g~GKS-tl----in~l~g~~~~~~~~~~~~~t~~~~~~~~~~~--~~~i~liDTp-G~~~~~~~~~~~ 98 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKS-AT----GNSILGRKVFHSGTAAKSITKKCEKRSSSWK--ETELVVVDTP-GIFDTEVPNAET 98 (239)
T ss_dssp -CEEEEEEECCTTSSHH-HH----HHHHHTSCCSCC-------CCSCEEEEEEET--TEEEEEEECC-SCC-----CHHH
T ss_pred CCceEEEEECCCCCCHH-HH----HHHHcCCCcCccCCCCCceeeeEEEEEEEeC--CceEEEEECC-CccCCCCCHHHH
Confidence 34567999999998886 77 44444332211 111 22222 3688999887 41
Q ss_pred hHHHHHHHhh----hceEEEeeeCCCccccccccccChHHHHHHHHHH----hcCCCceEEEeccCCc-chhhhHH----
Q 003796 135 LVGCMEMAKV----ADLVAFVASASSFSEESMSYYIDSFGNQCLSVFR----SLGLPSTAVLIRDLPT-DLKKRKD---- 201 (795)
Q Consensus 135 l~~~LD~aKv----ADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~----aqG~P~vigVl~~Ld~-~~Kk~~~---- 201 (795)
...+..+... +|.+|+|+|++. ++.+..+.|..+. ..-...++.|+++.|. ......+
T Consensus 99 ~~~~~~~~~~~~~~~~~~l~v~d~~~---------~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i~~ 169 (239)
T 3lxx_A 99 SKEIIRCILLTSPGPHALLLVVPLGR---------YTEEEHKATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLRE 169 (239)
T ss_dssp HHHHHHHHHHTTTCCSEEEEEEETTC---------CSSHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC-----------
T ss_pred HHHHHHHHHhcCCCCcEEEEEeeCCC---------CCHHHHHHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHHHHh
Confidence 2234444433 599999999873 3334444444443 1112246777888774 1111110
Q ss_pred HHHHHHhhcccccCCCCeeEEeCCH-------HHHHHHHHHHhhcc
Q 003796 202 LKKMCISSLTSEFPEDCKFYAADTK-------DELHKFLWLFKEQR 240 (795)
Q Consensus 202 ~kK~lk~~f~~ef~~~~Klf~l~~~-------~E~~nL~R~Is~~k 240 (795)
..+.++..+. ++ +.+.+.+++. ..+..|+..|..+-
T Consensus 170 ~~~~l~~l~~-~~--~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~ 212 (239)
T 3lxx_A 170 APEDIQDLMD-IF--GDRYCALNNKATGAEQEAQRAQLLGLIQRVV 212 (239)
T ss_dssp -CHHHHHHHH-HH--SSSEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHH-Hc--CCEEEEEECCCCccccHHHHHHHHHHHHHHH
Confidence 0112332222 22 3455556543 45777777776554
No 65
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=93.45 E-value=0.75 Score=43.00 Aligned_cols=103 Identities=9% Similarity=-0.011 Sum_probs=60.3
Q ss_pred CEEEEEecCCCccChhhHHHHHHHhhccCCC------CCc----ceEEEecCceeeEEEEeCCCC-ChH-HHHHHHhhhc
Q 003796 79 PRVIVLFGLSASVNLNSVREDLLRQLSSEGT------GAL----SSTVSSSKYRLRTSVLQAPHG-DLV-GCMEMAKVAD 146 (795)
Q Consensus 79 P~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~------~~g----~~tv~~~r~k~Ritfie~~~~-dl~-~~LD~aKvAD 146 (795)
.+-|+|+|.++.+.. +| ++.|..... +.| ...+.......++.|+.+|-. .+. ......+-||
T Consensus 15 ~~~i~v~G~~~~GKS-sl----i~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 89 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKS-CL----LHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAA 89 (179)
T ss_dssp EEEEEEECSTTSSHH-HH----HHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCS
T ss_pred ceEEEEECCCCCCHH-HH----HHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCC
Confidence 456999999998876 77 444432221 112 223334444568888988731 122 2445677899
Q ss_pred eEEEeeeCCCccccccccccChHHHHHHHHHHhc---CCCceEEEeccCCc
Q 003796 147 LVAFVASASSFSEESMSYYIDSFGNQCLSVFRSL---GLPSTAVLIRDLPT 194 (795)
Q Consensus 147 lVll~idas~g~~~~~~~~fe~eg~e~L~~l~aq---G~P~vigVl~~Ld~ 194 (795)
.+|+++|++.. ..|+. ...+|..+..+ +.| ++.|++..|.
T Consensus 90 ~~i~v~d~~~~------~s~~~-~~~~~~~~~~~~~~~~p-iilv~nK~Dl 132 (179)
T 1z0f_A 90 GALMVYDITRR------STYNH-LSSWLTDARNLTNPNTV-IILIGNKADL 132 (179)
T ss_dssp EEEEEEETTCH------HHHHT-HHHHHHHHHHHSCTTCE-EEEEEECTTC
T ss_pred EEEEEEeCcCH------HHHHH-HHHHHHHHHHhcCCCCc-EEEEEECccc
Confidence 99999999853 22322 22344444443 333 6777888885
No 66
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=93.28 E-value=0.31 Score=46.22 Aligned_cols=109 Identities=9% Similarity=0.048 Sum_probs=59.8
Q ss_pred CCEEEEEecCCCccChhhHHHHHHHhhc-c-CCCCC---cceEEEecCceeeEEEEeCCC-CChHHHH-HHHhhhceEEE
Q 003796 78 PPRVIVLFGLSASVNLNSVREDLLRQLS-S-EGTGA---LSSTVSSSKYRLRTSVLQAPH-GDLVGCM-EMAKVADLVAF 150 (795)
Q Consensus 78 pP~iV~Vvg~~~~~~~~sl~~~lvk~~~-~-~~~~~---g~~tv~~~r~k~Ritfie~~~-~dl~~~L-D~aKvADlVll 150 (795)
.++-|+|+|.++.+.. +|++.|+..-- . +..+. ....+........+.|+.+|- .....+. ...+-||.+|+
T Consensus 3 ~~~ki~v~G~~~~GKS-sli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 81 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKS-ALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 81 (189)
T ss_dssp EEEEEEEECCTTSSHH-HHHHHHHHSSCCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEE
T ss_pred cEEEEEEECCCCCCHH-HHHHHHHhCCCCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence 4566999999998876 77433332110 0 11111 112233344455688888873 1233333 34677999999
Q ss_pred eeeCCCccccccccccC---hHHHHHHHHHHhcCCCceEEEeccCCc
Q 003796 151 VASASSFSEESMSYYID---SFGNQCLSVFRSLGLPSTAVLIRDLPT 194 (795)
Q Consensus 151 ~idas~g~~~~~~~~fe---~eg~e~L~~l~aqG~P~vigVl~~Ld~ 194 (795)
++|++.. ..|+ .+-.++++.+...+.| ++.|++..|.
T Consensus 82 v~d~~~~------~s~~~~~~~~~~~~~~~~~~~~p-~i~v~nK~Dl 121 (189)
T 4dsu_A 82 VFAINNT------KSFEDIHHYREQIKRVKDSEDVP-MVLVGNKCDL 121 (189)
T ss_dssp EEETTCH------HHHHHHHHHHHHHHHHTTCSCCC-EEEEEECTTS
T ss_pred EEECCCH------HHHHHHHHHHHHHHHhcCCCCCc-EEEEEECccC
Confidence 9999853 2232 2333444444444665 5667888775
No 67
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.13 E-value=0.37 Score=44.63 Aligned_cols=107 Identities=8% Similarity=0.036 Sum_probs=59.5
Q ss_pred CEEEEEecCCCccChhhHHHHHHHhh-cc-CCCCCc----ceEEEecCceeeEEEEeCCCC-ChHH-HHHHHhhhceEEE
Q 003796 79 PRVIVLFGLSASVNLNSVREDLLRQL-SS-EGTGAL----SSTVSSSKYRLRTSVLQAPHG-DLVG-CMEMAKVADLVAF 150 (795)
Q Consensus 79 P~iV~Vvg~~~~~~~~sl~~~lvk~~-~~-~~~~~g----~~tv~~~r~k~Ritfie~~~~-dl~~-~LD~aKvADlVll 150 (795)
++-|+|+|+++.+.. +|++.|+..- .. ...+.| ..++..+....+++++.+|-. .... .....+-||.+|+
T Consensus 3 ~~~i~v~G~~~~GKs-sli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKS-SIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV 81 (170)
T ss_dssp EEEEEEECSTTSSHH-HHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred eEEEEEECCCCCCHH-HHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence 456999999998875 6733333211 11 111112 222333444568899988731 1222 3445678999999
Q ss_pred eeeCCCccccccccccChHHHHHHHHHHhc---CCCceEEEeccCCc
Q 003796 151 VASASSFSEESMSYYIDSFGNQCLSVFRSL---GLPSTAVLIRDLPT 194 (795)
Q Consensus 151 ~idas~g~~~~~~~~fe~eg~e~L~~l~aq---G~P~vigVl~~Ld~ 194 (795)
++|++.. ..|+. ...++..+..+ +.| ++.|++..|.
T Consensus 82 v~d~~~~------~s~~~-~~~~~~~~~~~~~~~~p-iilv~nK~Dl 120 (170)
T 1ek0_A 82 VYDVTKP------QSFIK-ARHWVKELHEQASKDII-IALVGNKIDX 120 (170)
T ss_dssp EEETTCH------HHHHH-HHHHHHHHHHHSCTTCE-EEEEEECGGG
T ss_pred EEecCCh------HHHHH-HHHHHHHHHHhcCCCCc-EEEEEECCCc
Confidence 9999853 22322 23344444443 444 5566787774
No 68
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=93.10 E-value=0.72 Score=42.72 Aligned_cols=103 Identities=9% Similarity=0.045 Sum_probs=58.3
Q ss_pred CEEEEEecCCCccChhhHHHHHHHhhccCCC-----CC-cce---EEEecCceeeEEEEeCCC-CChHHH-HHHHhhhce
Q 003796 79 PRVIVLFGLSASVNLNSVREDLLRQLSSEGT-----GA-LSS---TVSSSKYRLRTSVLQAPH-GDLVGC-MEMAKVADL 147 (795)
Q Consensus 79 P~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~-----~~-g~~---tv~~~r~k~Ritfie~~~-~dl~~~-LD~aKvADl 147 (795)
++-|+|+|.++.+.. +| +..|..... .. +.. .+........++|+.+|- .+...+ ....+-||.
T Consensus 3 ~~~i~v~G~~~~GKs-sl----i~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~ 77 (172)
T 2erx_A 3 DYRVAVFGAGGVGKS-SL----VLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHA 77 (172)
T ss_dssp EEEEEEECCTTSSHH-HH----HHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSE
T ss_pred ceEEEEECCCCCCHH-HH----HHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCE
Confidence 456899999998876 67 444433211 11 211 122233345788998873 223333 345677999
Q ss_pred EEEeeeCCCccccccccccChHHHHHHHHHHh-----cCCCceEEEeccCCc
Q 003796 148 VAFVASASSFSEESMSYYIDSFGNQCLSVFRS-----LGLPSTAVLIRDLPT 194 (795)
Q Consensus 148 Vll~idas~g~~~~~~~~fe~eg~e~L~~l~a-----qG~P~vigVl~~Ld~ 194 (795)
+|+++|++.. ..|+.. ..++..+.. .+.| ++.|++..|.
T Consensus 78 ~i~v~d~~~~------~~~~~~-~~~~~~i~~~~~~~~~~p-ii~v~nK~Dl 121 (172)
T 2erx_A 78 FILVYSITSR------QSLEEL-KPIYEQICEIKGDVESIP-IMLVGNKCDE 121 (172)
T ss_dssp EEEEEETTCH------HHHHTT-HHHHHHHHHHHC---CCC-EEEEEECGGG
T ss_pred EEEEEECcCH------HHHHHH-HHHHHHHHHHhCCCCCCC-EEEEEEcccc
Confidence 9999999853 223221 223333332 2566 6778888885
No 69
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=93.05 E-value=0.61 Score=45.38 Aligned_cols=105 Identities=10% Similarity=0.075 Sum_probs=62.5
Q ss_pred CCEEEEEecCCCccChhhHHHHHHHhhccCCC------CCc---ceEEEecCceeeEEEEeCCCC-ChHHHH-HHHhhhc
Q 003796 78 PPRVIVLFGLSASVNLNSVREDLLRQLSSEGT------GAL---SSTVSSSKYRLRTSVLQAPHG-DLVGCM-EMAKVAD 146 (795)
Q Consensus 78 pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~------~~g---~~tv~~~r~k~Ritfie~~~~-dl~~~L-D~aKvAD 146 (795)
.++-|+|+|.++.+.. +| +..|+.... +.+ ...+.......+++++.+|-. .+..+. ...+-||
T Consensus 24 ~~~ki~vvG~~~~GKS-sl----i~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 98 (201)
T 2gco_A 24 IRKKLVIVGDGACGKT-CL----LIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTD 98 (201)
T ss_dssp EEEEEEEEESTTSSHH-HH----HHHHHHSSCCSSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCS
T ss_pred cceEEEEECCCCCCHH-HH----HHHHHhCcCCcccCCcccceEEEEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCC
Confidence 3456999999998876 67 444433211 111 123334444457888887621 122222 2456799
Q ss_pred eEEEeeeCCCccccccccccChHHHHHHHHHHhc--CCCceEEEeccCCc
Q 003796 147 LVAFVASASSFSEESMSYYIDSFGNQCLSVFRSL--GLPSTAVLIRDLPT 194 (795)
Q Consensus 147 lVll~idas~g~~~~~~~~fe~eg~e~L~~l~aq--G~P~vigVl~~Ld~ 194 (795)
.+|+++|++.. ..|+.....++..++.+ +.| ++.|++..|.
T Consensus 99 ~~i~v~d~~~~------~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl 141 (201)
T 2gco_A 99 VILMCFSIDSP------DSLENIPEKWTPEVKHFCPNVP-IILVGNKKDL 141 (201)
T ss_dssp EEEEEEETTCH------HHHHHHHHTHHHHHHHHSTTCC-EEEEEECGGG
T ss_pred EEEEEEECCCH------HHHHHHHHHHHHHHHHhCCCCC-EEEEEecHHh
Confidence 99999998852 23554445566666665 666 5667787775
No 70
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=92.99 E-value=0.4 Score=45.77 Aligned_cols=145 Identities=10% Similarity=0.050 Sum_probs=78.7
Q ss_pred CCCEEEEEecCCCccChhhHHHHHHHhhccCCC-----CCc--ceEEEecCceeeEEEEeCCCC-ChHHH-HHHHhhhce
Q 003796 77 SPPRVIVLFGLSASVNLNSVREDLLRQLSSEGT-----GAL--SSTVSSSKYRLRTSVLQAPHG-DLVGC-MEMAKVADL 147 (795)
Q Consensus 77 ~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~-----~~g--~~tv~~~r~k~Ritfie~~~~-dl~~~-LD~aKvADl 147 (795)
..+.-|+|+|.++.+.. +| +..|..... +.| ..++... ..+++++..+-. .+..+ ....+-||.
T Consensus 19 ~~~~~i~v~G~~~~GKS-sl----i~~l~~~~~~~~~~t~~~~~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 91 (181)
T 2h17_A 19 SQEHKVIIVGLDNAGKT-TI----LYQFSMNEVVHTSPTIGSNVEEIVIN--NTRFLMWDIGGQESLRSSWNTYYTNTEF 91 (181)
T ss_dssp --CEEEEEEEETTSSHH-HH----HHHHHTTSCEEEECCSSSSCEEEEET--TEEEEEEEESSSGGGTCGGGGGGTTCCE
T ss_pred CceeEEEEECCCCCCHH-HH----HHHHhcCCCCccCCcCceeeEEEEEC--CEEEEEEECCCCHhHHHHHHHHhccCCE
Confidence 34566999999998875 77 444433221 112 2233333 367888888621 12222 345678999
Q ss_pred EEEeeeCCCccccccccccChHHHHHHHHHHh---cCCCceEEEeccCCcch-hhhHHHHHHHHhhcccccCCCCeeEEe
Q 003796 148 VAFVASASSFSEESMSYYIDSFGNQCLSVFRS---LGLPSTAVLIRDLPTDL-KKRKDLKKMCISSLTSEFPEDCKFYAA 223 (795)
Q Consensus 148 Vll~idas~g~~~~~~~~fe~eg~e~L~~l~a---qG~P~vigVl~~Ld~~~-Kk~~~~kK~lk~~f~~ef~~~~Klf~l 223 (795)
+|+|+|++.. ..|+.....+..+++. .+.| ++.|++..|... .....+.+.+....... .+..+|.+
T Consensus 92 ii~v~D~~~~------~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~~~~~~i~~~~~~~~~~~--~~~~~~~~ 162 (181)
T 2h17_A 92 VIVVVDSTDR------ERISVTREELYKMLAHEDLRKAG-LLIFANKQDVKECMTVAEISQFLKLTSIKD--HQWHIQAC 162 (181)
T ss_dssp EEEEEETTCT------TTHHHHHHHHHHHHTCGGGTTCE-EEEEEECTTSTTCCCHHHHHHHTTGGGCCS--SCEEEEEC
T ss_pred EEEEEECCCH------HHHHHHHHHHHHHHhChhhCCCe-EEEEEECCCcccCCCHHHHHHHhCcccccC--CceEEEEc
Confidence 9999999853 3355544555555553 4554 667788888511 11233333332111111 24477888
Q ss_pred CC--HHHHHHHHHHHh
Q 003796 224 DT--KDELHKFLWLFK 237 (795)
Q Consensus 224 ~~--~~E~~nL~R~Is 237 (795)
|. ...+..|...|.
T Consensus 163 Sa~~g~gi~~l~~~l~ 178 (181)
T 2h17_A 163 CALTGEGLCQGLEWMM 178 (181)
T ss_dssp BTTTTBTHHHHHHHHH
T ss_pred cCCCCcCHHHHHHHHH
Confidence 74 233555555554
No 71
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=92.95 E-value=0.5 Score=44.36 Aligned_cols=109 Identities=10% Similarity=0.053 Sum_probs=61.7
Q ss_pred CCEEEEEecCCCccChhhHHHHHHHhh-cc-CCCCCcc---eEEEecCceeeEEEEeCCCC-ChHH-HHHHHhhhceEEE
Q 003796 78 PPRVIVLFGLSASVNLNSVREDLLRQL-SS-EGTGALS---STVSSSKYRLRTSVLQAPHG-DLVG-CMEMAKVADLVAF 150 (795)
Q Consensus 78 pP~iV~Vvg~~~~~~~~sl~~~lvk~~-~~-~~~~~g~---~tv~~~r~k~Ritfie~~~~-dl~~-~LD~aKvADlVll 150 (795)
.++-|+|+|.++.+.. +|++.|+..- .. +..+.+. .++.......+++|+.+|-. .... .....+-||.+|+
T Consensus 8 ~~~~i~v~G~~~~GKs-sli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~ 86 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKS-ALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLL 86 (181)
T ss_dssp CEEEEEEEECTTSSHH-HHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEEE
T ss_pred CceEEEEECCCCCCHH-HHHHHHHhCcCccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEEEE
Confidence 3466999999998876 7743333321 00 1111111 12333444568889988731 2222 2344677999999
Q ss_pred eeeCCCccccccccccC---hHHHHHHHHHHhcCCCceEEEeccCCc
Q 003796 151 VASASSFSEESMSYYID---SFGNQCLSVFRSLGLPSTAVLIRDLPT 194 (795)
Q Consensus 151 ~idas~g~~~~~~~~fe---~eg~e~L~~l~aqG~P~vigVl~~Ld~ 194 (795)
++|++.. ..|+ .+-.++++.+...+.| ++.|++..|.
T Consensus 87 v~d~~~~------~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl 126 (181)
T 2fn4_A 87 VFAINDR------QSFNEVGKLFTQILRVKDRDDFP-VVLVGNKADL 126 (181)
T ss_dssp EEETTCH------HHHHHHHHHHHHHHHHHTSSCCC-EEEEEECGGG
T ss_pred EEeCCCH------HHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccc
Confidence 9999853 2233 3333444555555666 5667888775
No 72
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=92.95 E-value=0.2 Score=48.19 Aligned_cols=104 Identities=13% Similarity=0.120 Sum_probs=56.3
Q ss_pred CCCEEEEEecCCCccChhhHHHHHHHhhccCCCC----C-cc-eEEEecCceeeEEEEeCCCC-----ChHH-HHHHHhh
Q 003796 77 SPPRVIVLFGLSASVNLNSVREDLLRQLSSEGTG----A-LS-STVSSSKYRLRTSVLQAPHG-----DLVG-CMEMAKV 144 (795)
Q Consensus 77 ~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~----~-g~-~tv~~~r~k~Ritfie~~~~-----dl~~-~LD~aKv 144 (795)
..+.-|+|+|+++.+.. +| +..|+..... . .+ ++... ....+.|+.+|-. .+.. +.+...-
T Consensus 46 ~~~~~i~vvG~~g~GKS-sl----l~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 118 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKT-SL----LTLLTTDSVRPTVVSQEPLSAADY--DGSGVTLVDFPGHVKLRYKLSDYLKTRAKF 118 (193)
T ss_dssp CCCCEEEEECCTTSSHH-HH----HHHHHHSSCC------------CC--CCTTCSEEEETTCCBSSCCHHHHHHHHGGG
T ss_pred CCCCEEEEECCCCCCHH-HH----HHHHhcCCCCcccccCCCceeeee--cCCeEEEEECCCCchHHHHHHHHHHhhccc
Confidence 45567899999998886 77 4444332211 1 11 12111 2357778877521 1222 2233345
Q ss_pred hceEEEeeeCC-CccccccccccChHHHHHHHHHHh------cCCCceEEEeccCCc
Q 003796 145 ADLVAFVASAS-SFSEESMSYYIDSFGNQCLSVFRS------LGLPSTAVLIRDLPT 194 (795)
Q Consensus 145 ADlVll~idas-~g~~~~~~~~fe~eg~e~L~~l~a------qG~P~vigVl~~Ld~ 194 (795)
||.+|+|+|++ .. ..|+.....+..++.. .+.| ++.|++..|.
T Consensus 119 ~~~~i~v~d~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl 168 (193)
T 2ged_A 119 VKGLIFMVDSTVDP------KKLTTTAEFLVDILSITESSCENGID-ILIACNKSEL 168 (193)
T ss_dssp EEEEEEEEETTCCH------HHHHHHHHHHHHHHHHHHHHSTTCCC-EEEEEECTTS
T ss_pred CCEEEEEEECCCCc------hhHHHHHHHHHHHHhhhhhccccCCC-EEEEEEchHh
Confidence 99999999998 31 2244333334444433 3555 6667888885
No 73
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=92.93 E-value=0.8 Score=43.54 Aligned_cols=103 Identities=11% Similarity=0.180 Sum_probs=62.5
Q ss_pred CCCEEEEEecCCCccChhhHHHHHHHhhccCCCCC-----cc--eEEEecCceeeEEEEeCCCCC--hHHH-HHHHhhhc
Q 003796 77 SPPRVIVLFGLSASVNLNSVREDLLRQLSSEGTGA-----LS--STVSSSKYRLRTSVLQAPHGD--LVGC-MEMAKVAD 146 (795)
Q Consensus 77 ~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~~-----g~--~tv~~~r~k~Ritfie~~~~d--l~~~-LD~aKvAD 146 (795)
..+.-|+|+|+++.+.. +| +..++...... |. .++... ..+++++.+| .. ...+ ....+-||
T Consensus 16 ~~~~~i~v~G~~~~GKs-sl----~~~l~~~~~~~~~~t~~~~~~~~~~~--~~~~~~~Dt~-G~~~~~~~~~~~~~~~d 87 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKT-TI----LKKFNGEDVDTISPTLGFNIKTLEHR--GFKLNIWDVG-GQKSLRSYWRNYFESTD 87 (186)
T ss_dssp -CCEEEEEECSTTSSHH-HH----HHHHTTCCCSSCCCCSSEEEEEEEET--TEEEEEEEEC-CSHHHHTTGGGGCTTCS
T ss_pred CCeeEEEEECCCCCCHH-HH----HHHHhcCCCCcccccCccceEEEEEC--CEEEEEEECC-CCHhHHHHHHHHhcCCC
Confidence 45677999999998876 77 55554333211 31 122333 3688899887 43 2222 23456799
Q ss_pred eEEEeeeCCCccccccccccChHHHHHHHHHHh---cCCCceEEEeccCCc
Q 003796 147 LVAFVASASSFSEESMSYYIDSFGNQCLSVFRS---LGLPSTAVLIRDLPT 194 (795)
Q Consensus 147 lVll~idas~g~~~~~~~~fe~eg~e~L~~l~a---qG~P~vigVl~~Ld~ 194 (795)
.+|+++|++.. ..|+.....+..+++. .+.| ++.|++..|.
T Consensus 88 ~ii~v~d~~~~------~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl 131 (186)
T 1ksh_A 88 GLIWVVDSADR------QRMQDCQRELQSLLVEERLAGAT-LLIFANKQDL 131 (186)
T ss_dssp EEEEEEETTCG------GGHHHHHHHHHHHHTCGGGTTCE-EEEEEECTTS
T ss_pred EEEEEEECcCH------HHHHHHHHHHHHHHhChhcCCCc-EEEEEeCccC
Confidence 99999999853 2354444444455543 3444 6677888885
No 74
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=92.92 E-value=0.96 Score=42.88 Aligned_cols=96 Identities=19% Similarity=0.279 Sum_probs=57.8
Q ss_pred EEEecCCCccChhhHHHHHHHhhccCCCCC--------cceEEEecCceeeEEEEeCCCCC-------------hHH---
Q 003796 82 IVLFGLSASVNLNSVREDLLRQLSSEGTGA--------LSSTVSSSKYRLRTSVLQAPHGD-------------LVG--- 137 (795)
Q Consensus 82 V~Vvg~~~~~~~~sl~~~lvk~~~~~~~~~--------g~~tv~~~r~k~Ritfie~~~~d-------------l~~--- 137 (795)
|+|+|.++.+.. +| +..|+...... .+.++... .++++..| .- +..
T Consensus 4 i~v~G~~~~GKS-sl----i~~l~~~~~~~~~~~~~t~~~~~~~~~----~~~l~Dt~-G~~~~~~~~~~~~~~~~~~~~ 73 (190)
T 2cxx_A 4 IIFAGRSNVGKS-TL----IYRLTGKKVRRGKRPGVTRKIIEIEWK----NHKIIDMP-GFGFMMGLPKEVQERIKDEIV 73 (190)
T ss_dssp EEEEEBTTSSHH-HH----HHHHHSCCCSSSSSTTCTTSCEEEEET----TEEEEECC-CBSCCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHH-HH----HHHHhCcCCccCCCCCccceeEEEecC----CEEEEECC-CccccccCCHHHHHHHHHHHH
Confidence 789999998876 77 44443322111 22333322 68889887 41 112
Q ss_pred -HHHH-HhhhceEEEeeeCCCcccccccccc-ChH--------HHHHHHHHHhcCCCceEEEeccCCc
Q 003796 138 -CMEM-AKVADLVAFVASASSFSEESMSYYI-DSF--------GNQCLSVFRSLGLPSTAVLIRDLPT 194 (795)
Q Consensus 138 -~LD~-aKvADlVll~idas~g~~~~~~~~f-e~e--------g~e~L~~l~aqG~P~vigVl~~Ld~ 194 (795)
.+.- +..+|+|++++|++.. ... +.| ..+++..+...+.| ++.|++..|.
T Consensus 74 ~~~~~~~~~~~~v~~v~d~~s~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl 134 (190)
T 2cxx_A 74 HFIEDNAKNIDVAVLVVDGKAA------PEIIKRWEKRGEIPIDVEFYQFLRELDIP-TIVAVNKLDK 134 (190)
T ss_dssp HHHHHHGGGCCEEEEEEETTHH------HHHHHHHHHTTCCCHHHHHHHHHHHTTCC-EEEEEECGGG
T ss_pred HHHHhhhccCCEEEEEEcchhh------hhHHHhhhccCccHHHHHHHHHHHhcCCc-eEEEeehHhc
Confidence 2222 7788999999998742 000 111 23466777777888 6777888775
No 75
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=92.91 E-value=1.2 Score=41.95 Aligned_cols=105 Identities=11% Similarity=0.079 Sum_probs=61.3
Q ss_pred CCEEEEEecCCCccChhhHHHHHHHhhccCCC------CCc---ceEEEecCceeeEEEEeCCC-CChHHH-HHHHhhhc
Q 003796 78 PPRVIVLFGLSASVNLNSVREDLLRQLSSEGT------GAL---SSTVSSSKYRLRTSVLQAPH-GDLVGC-MEMAKVAD 146 (795)
Q Consensus 78 pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~------~~g---~~tv~~~r~k~Ritfie~~~-~dl~~~-LD~aKvAD 146 (795)
+++-|+|+|.++.+.. +| +..|..... +.+ ..++.......++.|+.+|- .+...+ ....+-||
T Consensus 17 ~~~ki~v~G~~~~GKS-sl----i~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 91 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKS-AL----TLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGE 91 (187)
T ss_dssp CEEEEEEECSTTSSHH-HH----HHHHHHSCCCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCS
T ss_pred CceEEEEECCCCCCHH-HH----HHHHhhCCCCCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCC
Confidence 4566999999998876 67 444432211 111 11233333345788999873 223333 34577899
Q ss_pred eEEEeeeCCCccccccccccC---hHHHHHHHHHHhcCCCceEEEeccCCc
Q 003796 147 LVAFVASASSFSEESMSYYID---SFGNQCLSVFRSLGLPSTAVLIRDLPT 194 (795)
Q Consensus 147 lVll~idas~g~~~~~~~~fe---~eg~e~L~~l~aqG~P~vigVl~~Ld~ 194 (795)
.+|+++|++.. ..|+ .+-.+++..+...+.| ++.|++..|.
T Consensus 92 ~~i~v~d~~~~------~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl 135 (187)
T 2a9k_A 92 GFLCVFSITEM------ESFAATADFREQILRVKEDENVP-FLLVGNKSDL 135 (187)
T ss_dssp EEEEEEETTCH------HHHHHHHHHHHHHHHHHCCTTCC-EEEEEECGGG
T ss_pred EEEEEEECcCH------HHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccc
Confidence 99999999843 2232 2334444444444666 5667888775
No 76
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=92.85 E-value=0.27 Score=46.30 Aligned_cols=106 Identities=9% Similarity=-0.012 Sum_probs=60.8
Q ss_pred CCCEEEEEecCCCccChhhHHHHHHHhhccCCCCC------c----ceEEEecCceeeEEEEeCCCCC-hHH-HHHHHhh
Q 003796 77 SPPRVIVLFGLSASVNLNSVREDLLRQLSSEGTGA------L----SSTVSSSKYRLRTSVLQAPHGD-LVG-CMEMAKV 144 (795)
Q Consensus 77 ~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~~------g----~~tv~~~r~k~Ritfie~~~~d-l~~-~LD~aKv 144 (795)
.+++-|+|+|.++.+.. +| +..|....... + ..++.......+++|+.+|-.. ... .....+-
T Consensus 7 ~~~~~i~v~G~~~~GKs-sl----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 81 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKS-SL----LLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRG 81 (181)
T ss_dssp CEEEEEEEECCTTSCHH-HH----HHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTT
T ss_pred CcceEEEEECCCCCCHH-HH----HHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhcc
Confidence 34556899999998876 67 55554332111 1 2223334444678888887311 111 2334677
Q ss_pred hceEEEeeeCCCccccccccccChHHHHHHHHHHhcC-CCceEEEeccCCc
Q 003796 145 ADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLG-LPSTAVLIRDLPT 194 (795)
Q Consensus 145 ADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG-~P~vigVl~~Ld~ 194 (795)
||.+|+++|++.+ ..|+.. ..+|..+..+. =..++.|++..|.
T Consensus 82 ~d~~i~v~d~~~~------~s~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl 125 (181)
T 3tw8_B 82 THGVIVVYDVTSA------ESFVNV-KRWLHEINQNCDDVCRILVGNKNDD 125 (181)
T ss_dssp CSEEEEEEETTCH------HHHHHH-HHHHHHHHHHCTTSEEEEEEECTTC
T ss_pred CCEEEEEEECCCH------HHHHHH-HHHHHHHHHhCCCCCEEEEEECCCC
Confidence 9999999999853 223332 33455554443 2235667888885
No 77
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=92.81 E-value=1.8 Score=41.20 Aligned_cols=104 Identities=15% Similarity=0.216 Sum_probs=64.0
Q ss_pred CCCEEEEEecCCCccChhhHHHHHHHhhccCCCCC-----cce--EEEecCceeeEEEEeCCCC-ChHHH-HHHHhhhce
Q 003796 77 SPPRVIVLFGLSASVNLNSVREDLLRQLSSEGTGA-----LSS--TVSSSKYRLRTSVLQAPHG-DLVGC-MEMAKVADL 147 (795)
Q Consensus 77 ~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~~-----g~~--tv~~~r~k~Ritfie~~~~-dl~~~-LD~aKvADl 147 (795)
..+.-|+|+|+++.+.. +| ++.|+...... |.. ++... ..+++++..+-. .+.++ ....+-||.
T Consensus 14 ~~~~ki~ivG~~~vGKS-sL----~~~l~~~~~~~~~~t~g~~~~~~~~~--~~~l~i~Dt~G~~~~~~~~~~~~~~~~~ 86 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKT-TL----LKQLASEDISHITPTQGFNIKSVQSQ--GFKLNVWDIGGQRKIRPYWRSYFENTDI 86 (181)
T ss_dssp SSCEEEEEEESTTSSHH-HH----HHHHCCSCCEEEEEETTEEEEEEEET--TEEEEEEECSSCGGGHHHHHHHHTTCSE
T ss_pred CCceEEEEECCCCCCHH-HH----HHHHhcCCCCcccCcCCeEEEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCE
Confidence 45677999999998876 77 66665443211 321 23333 357888888622 23343 445688999
Q ss_pred EEEeeeCCCccccccccccChHHHHHHHHHHh---cCCCceEEEeccCCc
Q 003796 148 VAFVASASSFSEESMSYYIDSFGNQCLSVFRS---LGLPSTAVLIRDLPT 194 (795)
Q Consensus 148 Vll~idas~g~~~~~~~~fe~eg~e~L~~l~a---qG~P~vigVl~~Ld~ 194 (795)
+|+++|++.. ..|+.....+..+++. .+.| ++.|++..|.
T Consensus 87 ~i~v~d~~~~------~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl 129 (181)
T 1fzq_A 87 LIYVIDSADR------KRFEETGQELTELLEEEKLSCVP-VLIFANKQDL 129 (181)
T ss_dssp EEEEEETTCG------GGHHHHHHHHHHHTTCGGGTTCC-EEEEEECTTS
T ss_pred EEEEEECcCH------HHHHHHHHHHHHHHhChhhcCCC-EEEEEECcCc
Confidence 9999999853 2354433444444443 4555 6677888885
No 78
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=92.65 E-value=0.56 Score=45.35 Aligned_cols=104 Identities=10% Similarity=0.131 Sum_probs=59.4
Q ss_pred CCCEEEEEecCCCccChhhHHHHHHHhhccCC-----CCCcce--EEEecCceeeEEEEeCCCC-ChHHH-HHHHhhhce
Q 003796 77 SPPRVIVLFGLSASVNLNSVREDLLRQLSSEG-----TGALSS--TVSSSKYRLRTSVLQAPHG-DLVGC-MEMAKVADL 147 (795)
Q Consensus 77 ~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~-----~~~g~~--tv~~~r~k~Ritfie~~~~-dl~~~-LD~aKvADl 147 (795)
.++.-|+|+|+++.+.. +| ++.|+... .+.++. ++.... .+++++..+-. ....+ ....+-||.
T Consensus 21 ~~~~ki~~vG~~~vGKS-sl----i~~l~~~~~~~~~~t~~~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 93 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKT-TL----LHMLKNDRLATLQPTWHPTSEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNG 93 (190)
T ss_dssp ---CEEEEEESTTSSHH-HH----HHHHHHSCCCCCCCCCSCEEEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCE
T ss_pred CCccEEEEECCCCCCHH-HH----HHHHhcCCCCccccCCCCCeEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCE
Confidence 34557899999998876 67 44443321 112332 233332 67888887621 12222 234577999
Q ss_pred EEEeeeCCCccccccccccChHHHHHHHHHH---hcCCCceEEEeccCCc
Q 003796 148 VAFVASASSFSEESMSYYIDSFGNQCLSVFR---SLGLPSTAVLIRDLPT 194 (795)
Q Consensus 148 Vll~idas~g~~~~~~~~fe~eg~e~L~~l~---aqG~P~vigVl~~Ld~ 194 (795)
+|+++|++.+ ..|+.-...+..+++ ..+.| ++.|++..|.
T Consensus 94 ~i~v~d~~~~------~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl 136 (190)
T 1m2o_B 94 IVFLVDAADP------ERFDEARVELDALFNIAELKDVP-FVILGNKIDA 136 (190)
T ss_dssp EEEEEETTCG------GGHHHHHHHHHHHHTCGGGTTCC-EEEEEECTTS
T ss_pred EEEEEECCCh------HHHHHHHHHHHHHHcchhhcCCC-EEEEEECCCC
Confidence 9999999854 235443333434433 35665 6777888875
No 79
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=92.61 E-value=1.3 Score=40.55 Aligned_cols=105 Identities=11% Similarity=0.081 Sum_probs=60.4
Q ss_pred CCEEEEEecCCCccChhhHHHHHHHhhccCCC------CCcc---eEEEecCceeeEEEEeCCCC-ChHHH-HHHHhhhc
Q 003796 78 PPRVIVLFGLSASVNLNSVREDLLRQLSSEGT------GALS---STVSSSKYRLRTSVLQAPHG-DLVGC-MEMAKVAD 146 (795)
Q Consensus 78 pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~------~~g~---~tv~~~r~k~Ritfie~~~~-dl~~~-LD~aKvAD 146 (795)
+++-|+|+|.++.+.. +| +..+..... +.+. .++.......++.++.+|-. ....+ -...+-||
T Consensus 3 ~~~~i~v~G~~~~GKs-sl----~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d 77 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKS-AL----TLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGE 77 (168)
T ss_dssp CEEEEEEECSTTSSHH-HH----HHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCS
T ss_pred ceEEEEEECCCCCCHH-HH----HHHHHhCccCCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCC
Confidence 4566999999998875 67 444432221 1111 22333433457889998731 22333 34567899
Q ss_pred eEEEeeeCCCccccccccccC---hHHHHHHHHHHhcCCCceEEEeccCCc
Q 003796 147 LVAFVASASSFSEESMSYYID---SFGNQCLSVFRSLGLPSTAVLIRDLPT 194 (795)
Q Consensus 147 lVll~idas~g~~~~~~~~fe---~eg~e~L~~l~aqG~P~vigVl~~Ld~ 194 (795)
.+|+++|++.. ..|+ .+-.+++......+.| ++.|++..|.
T Consensus 78 ~~i~v~d~~~~------~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl 121 (168)
T 1u8z_A 78 GFLCVFSITEM------ESFAATADFREQILRVKEDENVP-FLLVGNKSDL 121 (168)
T ss_dssp EEEEEEETTCH------HHHHHHHHHHHHHHHHHCCTTSC-EEEEEECGGG
T ss_pred EEEEEEECCCH------HHHHHHHHHHHHHHHhcCCCCCc-EEEEEECccc
Confidence 99999999853 2232 2233444444334666 5667888775
No 80
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=92.55 E-value=4.3 Score=43.66 Aligned_cols=106 Identities=13% Similarity=0.160 Sum_probs=61.3
Q ss_pred CCCCEEEEEecCCCccChhhHHHHHHHhhccCCCCC--------cceEEEecCceeeEEEEeCCCCCh------------
Q 003796 76 ASPPRVIVLFGLSASVNLNSVREDLLRQLSSEGTGA--------LSSTVSSSKYRLRTSVLQAPHGDL------------ 135 (795)
Q Consensus 76 ~~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~~--------g~~tv~~~r~k~Ritfie~~~~dl------------ 135 (795)
...+..|+|+|+++.+.. +| +..++...... ++...........+.++.+| .-+
T Consensus 164 ~~~~~~v~lvG~~gvGKS-TL----in~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~-G~~~~~~~~~~~~~~ 237 (357)
T 2e87_A 164 DLEIPTVVIAGHPNVGKS-TL----LKALTTAKPEIASYPFTTRGINVGQFEDGYFRYQIIDTP-GLLDRPISERNEIEK 237 (357)
T ss_dssp CSSSCEEEEECSTTSSHH-HH----HHHHCSSCCEEECCTTCSSCEEEEEEEETTEEEEEEECT-TTSSSCSTTSCHHHH
T ss_pred CCCCCEEEEECCCCCCHH-HH----HHHHhCCCCccCCCCCeeeceeEEEEEecCceEEEEeCC-CccccchhhhhHHHH
Confidence 356678999999998876 77 55554433111 11111111112468888876 321
Q ss_pred HHHHHHHhhhceEEEeeeCCCccccccccccChH-HHHHHHHHHh--cCCCceEEEeccCCc
Q 003796 136 VGCMEMAKVADLVAFVASASSFSEESMSYYIDSF-GNQCLSVFRS--LGLPSTAVLIRDLPT 194 (795)
Q Consensus 136 ~~~LD~aKvADlVll~idas~g~~~~~~~~fe~e-g~e~L~~l~a--qG~P~vigVl~~Ld~ 194 (795)
..+...+..||.+|+|+|++.+ .+++.+ ..+++..+.. .|.| ++.|++..|.
T Consensus 238 ~~~~~~~~~ad~illV~D~s~~------~~~~~~~~~~~~~~i~~~~~~~p-iilV~NK~Dl 292 (357)
T 2e87_A 238 QAILALRYLGNLIIYIFDPSEH------CGFPLEEQIHLFEEVHGEFKDLP-FLVVINKIDV 292 (357)
T ss_dssp HHHHGGGGTCSEEEEEECTTCT------TSSCHHHHHHHHHHHHHHTTTSC-EEEEECCTTT
T ss_pred HHHHHHHhcCCEEEEEEeCCcc------ccCCHHHHHHHHHHHHHhcCCCC-EEEEEECccc
Confidence 2344455679999999998753 233322 2455555544 2555 6677887775
No 81
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.52 E-value=0.77 Score=44.29 Aligned_cols=105 Identities=6% Similarity=0.016 Sum_probs=61.1
Q ss_pred CCEEEEEecCCCccChhhHHHHHHHhhccCCC------CCcc---eEEEecCceeeEEEEeCCCCC-hHHHHHHHhhhce
Q 003796 78 PPRVIVLFGLSASVNLNSVREDLLRQLSSEGT------GALS---STVSSSKYRLRTSVLQAPHGD-LVGCMEMAKVADL 147 (795)
Q Consensus 78 pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~------~~g~---~tv~~~r~k~Ritfie~~~~d-l~~~LD~aKvADl 147 (795)
+++-|+|+|.++.+.. +| +..|+.... +.+. .++........+.|+.++-.. ..-.....+-||.
T Consensus 27 ~~~ki~v~G~~~vGKS-sl----i~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~d~ 101 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKS-AL----VVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQEDTIQREGHMRWGEG 101 (196)
T ss_dssp CCEEEEEECCTTSSHH-HH----HHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCCCHHHHHHHHHCSE
T ss_pred CceEEEEECCCCCCHH-HH----HHHHHhCCCCcccCCCCCceEEEEEEECCEEEEEEEEECCCCCcccchhhhhccCCE
Confidence 4566999999998876 77 444433221 1121 123334445678889887322 2334556788999
Q ss_pred EEEeeeCCCccccccccccC---hHHHHHHHHHHhcCCCceEEEeccCCc
Q 003796 148 VAFVASASSFSEESMSYYID---SFGNQCLSVFRSLGLPSTAVLIRDLPT 194 (795)
Q Consensus 148 Vll~idas~g~~~~~~~~fe---~eg~e~L~~l~aqG~P~vigVl~~Ld~ 194 (795)
+|+++|++.. ..|+ .+-.+++......+.| ++.|++..|.
T Consensus 102 iilv~D~~~~------~s~~~~~~~~~~i~~~~~~~~~p-iilv~NK~Dl 144 (196)
T 2atv_A 102 FVLVYDITDR------GSFEEVLPLKNILDEIKKPKNVT-LILVGNKADL 144 (196)
T ss_dssp EEEEEETTCH------HHHHTHHHHHHHHHHHHTTSCCC-EEEEEECGGG
T ss_pred EEEEEECcCH------HHHHHHHHHHHHHHHhhCCCCCc-EEEEEECccc
Confidence 9999999842 2232 2233333333334665 5666777775
No 82
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=92.35 E-value=0.85 Score=47.22 Aligned_cols=82 Identities=13% Similarity=0.197 Sum_probs=44.6
Q ss_pred hceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc-chhhhHHHHHHHHhhcccccCCCCeeEEe
Q 003796 145 ADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT-DLKKRKDLKKMCISSLTSEFPEDCKFYAA 223 (795)
Q Consensus 145 ADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~-~~Kk~~~~kK~lk~~f~~ef~~~~Klf~l 223 (795)
+|.+|++++++. .++.....+++..|.. +.| ++.|++..|. ........++.++..+.. .+..+|.+
T Consensus 116 ~~~~l~~i~~~~-------~~~~~~d~~~l~~l~~-~~p-vi~V~nK~D~~~~~e~~~~~~~i~~~l~~---~~i~v~~~ 183 (274)
T 3t5d_A 116 VQCCLYFIAPSG-------HGLKPLDIEFMKRLHE-KVN-IIPLIAKADTLTPEECQQFKKQIMKEIQE---HKIKIYEF 183 (274)
T ss_dssp CCEEEEEECSCC-------SSCCHHHHHHHHHHTT-TSC-EEEEESSGGGSCHHHHHHHHHHHHHHHHH---TTCCCCCC
T ss_pred eeEEEEEecCCC-------CCCCHHHHHHHHHHhc-cCC-EEEEEeccCCCCHHHHHHHHHHHHHHHHH---cCCeEEcC
Confidence 668888886653 2377777889999887 766 6778888885 112223344444444432 24556666
Q ss_pred C--CHHHHHHHHHHHhh
Q 003796 224 D--TKDELHKFLWLFKE 238 (795)
Q Consensus 224 ~--~~~E~~nL~R~Is~ 238 (795)
+ ...++..|...|..
T Consensus 184 sa~~~~~~~~l~~~l~~ 200 (274)
T 3t5d_A 184 PETDDEEENKLVKKIKD 200 (274)
T ss_dssp -----------CHHHHH
T ss_pred CCCCChhHHHHHHHHhc
Confidence 5 23445556666654
No 83
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=92.26 E-value=0.77 Score=44.52 Aligned_cols=104 Identities=13% Similarity=0.043 Sum_probs=61.1
Q ss_pred CCEEEEEecCCCccChhhHHHHHHHhhccCCC------CCc----ceEEEecCceeeEEEEeCCC-CChHH-HHHHHhhh
Q 003796 78 PPRVIVLFGLSASVNLNSVREDLLRQLSSEGT------GAL----SSTVSSSKYRLRTSVLQAPH-GDLVG-CMEMAKVA 145 (795)
Q Consensus 78 pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~------~~g----~~tv~~~r~k~Ritfie~~~-~dl~~-~LD~aKvA 145 (795)
.++-|+|+|.++.+.. +| +..|..... +.| ..++........++|+.+|- ..+.. .....+-|
T Consensus 27 ~~~ki~v~G~~~~GKS-sl----i~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 101 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKS-SF----LMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKA 101 (199)
T ss_dssp -CEEEEEESSTTSSHH-HH----HHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHC
T ss_pred CCeEEEEECcCCCCHH-HH----HHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhC
Confidence 4567999999998876 67 444432221 112 23344444456799999873 22333 34557789
Q ss_pred ceEEEeeeCCCccccccccccChHHHHHHHHHHhc---CCCceEEEeccCCc
Q 003796 146 DLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSL---GLPSTAVLIRDLPT 194 (795)
Q Consensus 146 DlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aq---G~P~vigVl~~Ld~ 194 (795)
|.+|||+|++.+ ..|+.. ..++..++.. +.| ++.|++..|.
T Consensus 102 d~iilv~d~~~~------~s~~~~-~~~~~~i~~~~~~~~p-iilv~NK~Dl 145 (199)
T 2p5s_A 102 DGVLLLYDVTCE------KSFLNI-REWVDMIEDAAHETVP-IMLVGNKADI 145 (199)
T ss_dssp SEEEEEEETTCH------HHHHTH-HHHHHHHHHHC---CC-EEEEEECGGG
T ss_pred CEEEEEEECCCh------HHHHHH-HHHHHHHHHhcCCCCC-EEEEEECccc
Confidence 999999999853 223322 2344444443 555 6677888775
No 84
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=92.23 E-value=0.78 Score=44.72 Aligned_cols=104 Identities=10% Similarity=0.116 Sum_probs=60.4
Q ss_pred CCCEEEEEecCCCccChhhHHHHHHHhhccCCC-----CCc--ceEEEecCceeeEEEEeCCCC-ChHHHH-HHHhhhce
Q 003796 77 SPPRVIVLFGLSASVNLNSVREDLLRQLSSEGT-----GAL--SSTVSSSKYRLRTSVLQAPHG-DLVGCM-EMAKVADL 147 (795)
Q Consensus 77 ~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~-----~~g--~~tv~~~r~k~Ritfie~~~~-dl~~~L-D~aKvADl 147 (795)
..+.-|+|+|+++.+.. +| ++.|+.... +.| ..++.... .++.++..|-. ....+. ...+-||.
T Consensus 23 ~~~~ki~lvG~~~vGKS-sL----i~~l~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 95 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKT-TL----LHMLKDDRLGQHVPTLHPTSEELTIAG--MTFTTFDLGGHIQARRVWKNYLPAING 95 (198)
T ss_dssp TCCEEEEEEEETTSSHH-HH----HHHHSCC------CCCCCSCEEEEETT--EEEEEEEECC----CCGGGGGGGGCSE
T ss_pred CCCcEEEEECCCCCCHH-HH----HHHHhcCCCCccCCCCCceeEEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCE
Confidence 34566899999998876 67 555543211 112 22333332 57778876521 122222 34678999
Q ss_pred EEEeeeCCCccccccccccChHHHHHHHHHH---hcCCCceEEEeccCCc
Q 003796 148 VAFVASASSFSEESMSYYIDSFGNQCLSVFR---SLGLPSTAVLIRDLPT 194 (795)
Q Consensus 148 Vll~idas~g~~~~~~~~fe~eg~e~L~~l~---aqG~P~vigVl~~Ld~ 194 (795)
+|+++|++.. ..|+.-...+..+++ ..+.| ++.|++..|.
T Consensus 96 ~i~v~D~~~~------~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl 138 (198)
T 1f6b_A 96 IVFLVDCADH------ERLLESKEELDSLMTDETIANVP-ILILGNKIDR 138 (198)
T ss_dssp EEEEEETTCG------GGHHHHHHHHHHHHTCGGGTTSC-EEEEEECTTS
T ss_pred EEEEEECCCH------HHHHHHHHHHHHHHhCcccCCCc-EEEEEECCCc
Confidence 9999999853 235544444444443 35666 5667888885
No 85
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=92.22 E-value=0.7 Score=42.94 Aligned_cols=102 Identities=13% Similarity=0.068 Sum_probs=55.3
Q ss_pred EEEEecCCCccChhhHHHHHHHhhccCCCC------C----cceEEEecCceeeEEEEeCCCC-ChHH-HHH-HHhhhce
Q 003796 81 VIVLFGLSASVNLNSVREDLLRQLSSEGTG------A----LSSTVSSSKYRLRTSVLQAPHG-DLVG-CME-MAKVADL 147 (795)
Q Consensus 81 iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~------~----g~~tv~~~r~k~Ritfie~~~~-dl~~-~LD-~aKvADl 147 (795)
=|+|+|.++.+.. +| +..|+..... . ...++......-.+.++..+.. +..+ +.. ..+-||.
T Consensus 4 ki~ivG~~~~GKS-sl----i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~ 78 (169)
T 3q85_A 4 KVMLVGESGVGKS-TL----AGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDA 78 (169)
T ss_dssp EEEEECSTTSSHH-HH----HHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSE
T ss_pred EEEEECCCCCCHH-HH----HHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCE
Confidence 4899999998886 77 4444321111 1 2223334444567778877522 2222 222 2567999
Q ss_pred EEEeeeCCCccccccccccChHHHHHHHHHHhc---CCCceEEEeccCCc
Q 003796 148 VAFVASASSFSEESMSYYIDSFGNQCLSVFRSL---GLPSTAVLIRDLPT 194 (795)
Q Consensus 148 Vll~idas~g~~~~~~~~fe~eg~e~L~~l~aq---G~P~vigVl~~Ld~ 194 (795)
+|+++|++.. ..|+.-...+..+++.. +.| ++.|++..|.
T Consensus 79 ~i~v~d~~~~------~s~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl 121 (169)
T 3q85_A 79 FLIVFSVTDR------RSFSKVPETLLRLRAGRPHHDLP-VILVGNKSDL 121 (169)
T ss_dssp EEEEEETTCH------HHHHTHHHHHHHHHHHSTTSCCC-EEEEEECTTC
T ss_pred EEEEEECCCh------HHHHHHHHHHHHHHhcccCCCCC-EEEEeeCcch
Confidence 9999999853 23444333333333332 555 5566788875
No 86
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=92.20 E-value=0.49 Score=43.91 Aligned_cols=103 Identities=10% Similarity=-0.009 Sum_probs=59.7
Q ss_pred CEEEEEecCCCccChhhHHHHHHHhhccCCCCC------c----ceEEEecCceeeEEEEeCCCCC-hH-HHHHHHhhhc
Q 003796 79 PRVIVLFGLSASVNLNSVREDLLRQLSSEGTGA------L----SSTVSSSKYRLRTSVLQAPHGD-LV-GCMEMAKVAD 146 (795)
Q Consensus 79 P~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~~------g----~~tv~~~r~k~Ritfie~~~~d-l~-~~LD~aKvAD 146 (795)
++=|+|+|+++.+.. +| +..|....... | ..++..+....+++++.+|-.. .. ......+-||
T Consensus 3 ~~~i~v~G~~~~GKs-sl----i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d 77 (170)
T 1g16_A 3 IMKILLIGDSGVGKS-CL----LVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAM 77 (170)
T ss_dssp EEEEEEEESTTSSHH-HH----HHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEE
T ss_pred ceEEEEECcCCCCHH-HH----HHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCC
Confidence 455899999998876 67 44443222111 1 2233344445678888887211 11 1345567899
Q ss_pred eEEEeeeCCCccccccccccChHHHHHHHHHHhc---CCCceEEEeccCCc
Q 003796 147 LVAFVASASSFSEESMSYYIDSFGNQCLSVFRSL---GLPSTAVLIRDLPT 194 (795)
Q Consensus 147 lVll~idas~g~~~~~~~~fe~eg~e~L~~l~aq---G~P~vigVl~~Ld~ 194 (795)
.+|+++|++.. ..|+. ...++..+..+ +.| ++.|++..|.
T Consensus 78 ~~i~v~d~~~~------~s~~~-~~~~~~~i~~~~~~~~p-iilv~nK~Dl 120 (170)
T 1g16_A 78 GIILVYDITDE------RTFTN-IKQWFKTVNEHANDEAQ-LLLVGNKSDM 120 (170)
T ss_dssp EEEEEEETTCH------HHHHT-HHHHHHHHHHHSCTTCE-EEEEEECTTC
T ss_pred EEEEEEECCCH------HHHHH-HHHHHHHHHHhcCCCCc-EEEEEECccC
Confidence 99999999853 22322 23455555544 443 5667888775
No 87
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=92.19 E-value=0.92 Score=43.50 Aligned_cols=108 Identities=7% Similarity=0.005 Sum_probs=61.9
Q ss_pred CEEEEEecCCCccChhhHHHHHHHhh-cc-CCCCCc---ceEEEecCceeeEEEEeCCC-CChHHH-HHHHhhhceEEEe
Q 003796 79 PRVIVLFGLSASVNLNSVREDLLRQL-SS-EGTGAL---SSTVSSSKYRLRTSVLQAPH-GDLVGC-MEMAKVADLVAFV 151 (795)
Q Consensus 79 P~iV~Vvg~~~~~~~~sl~~~lvk~~-~~-~~~~~g---~~tv~~~r~k~Ritfie~~~-~dl~~~-LD~aKvADlVll~ 151 (795)
.+-|+|+|.++.+.. +|++.|+..- .. +..+.+ ..++.....+.+++++.++- .+...+ ....+-||.+|||
T Consensus 18 ~~ki~v~G~~~~GKs-sli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 96 (194)
T 2atx_A 18 MLKCVVVGDGAVGKT-CLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLIC 96 (194)
T ss_dssp EEEEEEEECTTSSHH-HHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEEE
T ss_pred eEEEEEECCCCCCHH-HHHHHHhcCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEEEE
Confidence 356899999998876 7743333221 00 111111 12344444456788888763 122222 2345679999999
Q ss_pred eeCCCccccccccccChHHHHHHHHHHhc--CCCceEEEeccCCc
Q 003796 152 ASASSFSEESMSYYIDSFGNQCLSVFRSL--GLPSTAVLIRDLPT 194 (795)
Q Consensus 152 idas~g~~~~~~~~fe~eg~e~L~~l~aq--G~P~vigVl~~Ld~ 194 (795)
+|++.. ..|+.....++..+..+ +.| ++.|++..|.
T Consensus 97 ~d~~~~------~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl 134 (194)
T 2atx_A 97 FSVVNP------ASFQNVKEEWVPELKEYAPNVP-FLLIGTQIDL 134 (194)
T ss_dssp EETTCH------HHHHHHHHTHHHHHHHHSTTCC-EEEEEECTTS
T ss_pred EECCCH------HHHHHHHHHHHHHHHHhCCCCC-EEEEEEChhh
Confidence 999853 23443333566666665 665 5667888775
No 88
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=92.17 E-value=2 Score=39.45 Aligned_cols=106 Identities=11% Similarity=0.070 Sum_probs=59.6
Q ss_pred CEEEEEecCCCccChhhHHHHHHHhhc-c-CCCCCc----ceEEEecCceeeEEEEeCCCCC--hHH-HHHHHhhhceEE
Q 003796 79 PRVIVLFGLSASVNLNSVREDLLRQLS-S-EGTGAL----SSTVSSSKYRLRTSVLQAPHGD--LVG-CMEMAKVADLVA 149 (795)
Q Consensus 79 P~iV~Vvg~~~~~~~~sl~~~lvk~~~-~-~~~~~g----~~tv~~~r~k~Ritfie~~~~d--l~~-~LD~aKvADlVl 149 (795)
+.-|+|+|.++.+.. +|++.|+.... . +..+.| ..++..+....+++++.+| .. ... .....+-||.+|
T Consensus 5 ~~~i~v~G~~~~GKs-sl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~-G~~~~~~~~~~~~~~~d~~i 82 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKS-SMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTA-GQEEFDAITKAYYRGAQACV 82 (168)
T ss_dssp EEEEEEECSTTSSHH-HHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCT-TGGGTTCCCHHHHTTCCEEE
T ss_pred eEEEEEECcCCCCHH-HHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCC-CcHhHHHHHHHHhcCCCEEE
Confidence 456899999998876 77443333211 1 011111 2233334445688888887 32 111 334567899999
Q ss_pred EeeeCCCccccccccccChHHHHHHHHHHhc--CCCceEEEeccCCc
Q 003796 150 FVASASSFSEESMSYYIDSFGNQCLSVFRSL--GLPSTAVLIRDLPT 194 (795)
Q Consensus 150 l~idas~g~~~~~~~~fe~eg~e~L~~l~aq--G~P~vigVl~~Ld~ 194 (795)
+++|++.. ..|+. ...++..+..+ +.| ++.|++..|.
T Consensus 83 ~v~d~~~~------~s~~~-~~~~~~~i~~~~~~~p-iilv~nK~Dl 121 (168)
T 1z2a_A 83 LVFSTTDR------ESFEA-ISSWREKVVAEVGDIP-TALVQNKIDL 121 (168)
T ss_dssp EEEETTCH------HHHHT-HHHHHHHHHHHHCSCC-EEEEEECGGG
T ss_pred EEEECcCH------HHHHH-HHHHHHHHHHhCCCCC-EEEEEECccc
Confidence 99999853 22332 22344444333 555 6677888885
No 89
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=92.13 E-value=0.77 Score=43.67 Aligned_cols=101 Identities=13% Similarity=0.131 Sum_probs=58.1
Q ss_pred CCCCEEEEEecCCCccChhhHHHHHHHhhccCC------C--CC--cceEEEecCceeeEEEEeCCCC-ChH------HH
Q 003796 76 ASPPRVIVLFGLSASVNLNSVREDLLRQLSSEG------T--GA--LSSTVSSSKYRLRTSVLQAPHG-DLV------GC 138 (795)
Q Consensus 76 ~~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~------~--~~--g~~tv~~~r~k~Ritfie~~~~-dl~------~~ 138 (795)
...+..|+|+|+++.++. +| ++.|+... . +. ...++... ..++.++..|-. .+. .+
T Consensus 4 ~~~~~~i~lvG~~gvGKS-tL----~~~l~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~ 76 (188)
T 2wjg_A 4 HMKSYEIALIGNPNVGKS-TI----FNALTGENVYIGNWPGVTVEKKEGEFEYN--GEKFKVVDLPGVYSLTANSIDEII 76 (188)
T ss_dssp CCCEEEEEEECSTTSSHH-HH----HHHHHTTCEEEEECTTSCCEEEEEEEEET--TEEEEEEECCCCSCCSSSSHHHHH
T ss_pred CCCCCEEEEECCCCCCHH-HH----HHHHhCCCccccCCCCeeccceEEEEEeC--CcEEEEEECCCcCccccccHHHHH
Confidence 345678999999998876 77 44443321 1 10 11122222 357888887621 111 22
Q ss_pred HH-HH--hhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc
Q 003796 139 ME-MA--KVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT 194 (795)
Q Consensus 139 LD-~a--KvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~ 194 (795)
.. .. .-||+|++++|++. ++. ...++..+...+.| ++.|++.+|.
T Consensus 77 ~~~~~~~~~~~~~i~v~d~~~---------~~~-~~~~~~~~~~~~~p-iilv~nK~Dl 124 (188)
T 2wjg_A 77 ARDYIINEKPDLVVNIVDATA---------LER-NLYLTLQLMEMGAN-LLLALNKMDL 124 (188)
T ss_dssp HHHHHHHHCCSEEEEEEEGGG---------HHH-HHHHHHHHHTTTCC-EEEEEECHHH
T ss_pred HHHHHhccCCCEEEEEecchh---------HHH-HHHHHHHHHhcCCC-EEEEEEhhhc
Confidence 22 12 34899999999873 332 34556666678887 4556777664
No 90
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=92.13 E-value=0.82 Score=43.15 Aligned_cols=108 Identities=10% Similarity=0.083 Sum_probs=58.4
Q ss_pred CEEEEEecCCCccChhhHHHHHHHh-hc-cCCCCCc---ceEEEecCceeeEEEEeCCCCC-hHH-HHHHHhhhceEEEe
Q 003796 79 PRVIVLFGLSASVNLNSVREDLLRQ-LS-SEGTGAL---SSTVSSSKYRLRTSVLQAPHGD-LVG-CMEMAKVADLVAFV 151 (795)
Q Consensus 79 P~iV~Vvg~~~~~~~~sl~~~lvk~-~~-~~~~~~g---~~tv~~~r~k~Ritfie~~~~d-l~~-~LD~aKvADlVll~ 151 (795)
++-|+|+|.++.+.. +|++.|+.. +. .+..+.+ ...+......-+++++.+|-.+ ... .....+-||.+|++
T Consensus 6 ~~ki~~~G~~~~GKS-sli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v 84 (181)
T 3t5g_A 6 SRKIAILGYRSVGKS-SLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILV 84 (181)
T ss_dssp EEEEEEEESTTSSHH-HHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEEEE
T ss_pred eEEEEEECcCCCCHH-HHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEEEE
Confidence 456899999998885 673333311 11 1111112 1222334444678889887322 221 22345679999999
Q ss_pred eeCCCccccccccccC---hHHHHHHHHHHhcCCCceEEEeccCCc
Q 003796 152 ASASSFSEESMSYYID---SFGNQCLSVFRSLGLPSTAVLIRDLPT 194 (795)
Q Consensus 152 idas~g~~~~~~~~fe---~eg~e~L~~l~aqG~P~vigVl~~Ld~ 194 (795)
+|++.. ..|+ .+-.++++.+...+.| ++.|++..|.
T Consensus 85 ~d~~~~------~s~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl 123 (181)
T 3t5g_A 85 YSVTSI------KSFEVIKVIHGKLLDMVGKVQIP-IMLVGNKKDL 123 (181)
T ss_dssp EETTCH------HHHHHHHHHHHHHHHHC----CC-EEEEEECTTC
T ss_pred EECCCH------HHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccc
Confidence 999842 2233 3444555555555776 5667787774
No 91
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=92.11 E-value=0.66 Score=44.24 Aligned_cols=104 Identities=11% Similarity=0.062 Sum_probs=60.5
Q ss_pred CCEEEEEecCCCccChhhHHHHHHHhhccCCC------CCc----ceEEEecCceeeEEEEeCCCCC-hH-HHHHHHhhh
Q 003796 78 PPRVIVLFGLSASVNLNSVREDLLRQLSSEGT------GAL----SSTVSSSKYRLRTSVLQAPHGD-LV-GCMEMAKVA 145 (795)
Q Consensus 78 pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~------~~g----~~tv~~~r~k~Ritfie~~~~d-l~-~~LD~aKvA 145 (795)
+++-|+|+|.++.+.. +| +..|+.... +.| ..++.......++.|+.+|-.. +. -.....+-|
T Consensus 14 ~~~~i~v~G~~~~GKs-sl----i~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 88 (195)
T 1x3s_A 14 TTLKILIIGESGVGKS-SL----LLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGA 88 (195)
T ss_dssp EEEEEEEECSTTSSHH-HH----HHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTC
T ss_pred CceEEEEECCCCCCHH-HH----HHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccC
Confidence 3567999999998876 67 444433221 112 2233344445678888887311 11 244567889
Q ss_pred ceEEEeeeCCCccccccccccChHHHHHHHHHHhc----CCCceEEEeccCCc
Q 003796 146 DLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSL----GLPSTAVLIRDLPT 194 (795)
Q Consensus 146 DlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aq----G~P~vigVl~~Ld~ 194 (795)
|.+|||+|++.. ..|+. ....|..+..+ +. .++.|++..|.
T Consensus 89 d~ii~v~d~~~~------~s~~~-~~~~~~~i~~~~~~~~~-p~ilv~nK~Dl 133 (195)
T 1x3s_A 89 QGVILVYDVTRR------DTFVK-LDNWLNELETYCTRNDI-VNMLVGNKIDK 133 (195)
T ss_dssp CEEEEEEETTCH------HHHHT-HHHHHHHHTTCCSCSCC-EEEEEEECTTS
T ss_pred CEEEEEEECcCH------HHHHH-HHHHHHHHHHhcCcCCC-cEEEEEECCcC
Confidence 999999999853 22322 22344555443 33 34567888775
No 92
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.09 E-value=1.5 Score=42.92 Aligned_cols=109 Identities=10% Similarity=0.035 Sum_probs=59.1
Q ss_pred CCCEEEEEecCCCccChhhHHHHHHHhhccCCC-CCcceEEEecCceeeEEEEeCCCC-ChHH-HHHHHhh----hceEE
Q 003796 77 SPPRVIVLFGLSASVNLNSVREDLLRQLSSEGT-GALSSTVSSSKYRLRTSVLQAPHG-DLVG-CMEMAKV----ADLVA 149 (795)
Q Consensus 77 ~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~-~~g~~tv~~~r~k~Ritfie~~~~-dl~~-~LD~aKv----ADlVl 149 (795)
..+.-|+|+|+++++.. +|++.|......... ...|.+ ...-...++.++..|-. .+.. +...++- ||.+|
T Consensus 10 ~~~~~i~~~G~~g~GKT-sl~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i 87 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKT-SLLTLLTTDSVRPTVVSQEPLS-AADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLI 87 (218)
T ss_dssp CCCCEEEEECSTTSSHH-HHHHHHHHSSCCCBCCCSSCEE-ETTGGGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEE
T ss_pred CCCCEEEEECCCCCCHH-HHHHHHhcCCCCCeeeecCceE-EEEeeCceEEEEECCCcHHHHHHHHHHHHhccccCCEEE
Confidence 34556889999998886 673333322111111 112222 21113468888987632 2222 2333343 89999
Q ss_pred EeeeCC-CccccccccccChHHHHHHHHHHh------cCCCceEEEeccCCc
Q 003796 150 FVASAS-SFSEESMSYYIDSFGNQCLSVFRS------LGLPSTAVLIRDLPT 194 (795)
Q Consensus 150 l~idas-~g~~~~~~~~fe~eg~e~L~~l~a------qG~P~vigVl~~Ld~ 194 (795)
+++|++ .. ..|+.....+..++.. .+.| ++.|++..|.
T Consensus 88 ~v~D~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl 132 (218)
T 1nrj_B 88 FMVDSTVDP------KKLTTTAEFLVDILSITESSCENGID-ILIACNKSEL 132 (218)
T ss_dssp EEEETTSCT------TCCHHHHHHHHHHHHHHHHHSTTCCC-EEEEEECTTS
T ss_pred EEEECCCCh------HHHHHHHHHHHHHHhcccccccCCCC-EEEEEEchHh
Confidence 999998 21 2354444444444433 4555 6677888875
No 93
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=92.08 E-value=0.47 Score=46.48 Aligned_cols=106 Identities=12% Similarity=0.026 Sum_probs=62.0
Q ss_pred CCCEEEEEecCCCccChhhHHHHHHHhhccCCC------CCc---ceEEEecCceeeEEEEeCCCC-ChHHHH-HHHhhh
Q 003796 77 SPPRVIVLFGLSASVNLNSVREDLLRQLSSEGT------GAL---SSTVSSSKYRLRTSVLQAPHG-DLVGCM-EMAKVA 145 (795)
Q Consensus 77 ~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~------~~g---~~tv~~~r~k~Ritfie~~~~-dl~~~L-D~aKvA 145 (795)
..++-|+|+|.++.+.. +| +..|+.... +.+ ..++......-.+.|+..|-. .+..+. ...+-|
T Consensus 28 ~~~~ki~vvG~~~~GKS-sL----i~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 102 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKT-CL----LISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQT 102 (204)
T ss_dssp --CEEEEEEESTTSSHH-HH----HHHHHHSCCCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTC
T ss_pred CCeEEEEEECcCCCCHH-HH----HHHHHhCCCCCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccC
Confidence 45778999999998875 67 444432211 111 122333434456668887621 222222 255789
Q ss_pred ceEEEeeeCCCccccccccccChHHHHHHHHHHhc--CCCceEEEeccCCc
Q 003796 146 DLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSL--GLPSTAVLIRDLPT 194 (795)
Q Consensus 146 DlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aq--G~P~vigVl~~Ld~ 194 (795)
|.+|+|+|++.. ..|+.....++..++.+ +.| ++.|++..|.
T Consensus 103 d~~i~v~d~~~~------~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl 146 (204)
T 4gzl_A 103 DVFLICFSLVSP------ASFENVRAKWYPEVRHHCPNTP-IILVGTKLDL 146 (204)
T ss_dssp SEEEEEEETTCH------HHHHHHHHTHHHHHHHHCSSCC-EEEEEECHHH
T ss_pred CEEEEEEECCCH------HHHHHHHHHHHHHHHHhCCCCC-EEEEEechhh
Confidence 999999999853 33544444677777776 555 4556777664
No 94
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=92.05 E-value=0.39 Score=53.88 Aligned_cols=100 Identities=12% Similarity=0.195 Sum_probs=64.7
Q ss_pred EEEEEecCCCccChhhHHHHHHHhhccCCCC---C--c----ceEEEecCceeeEEEEeCCCC-C------hHH----HH
Q 003796 80 RVIVLFGLSASVNLNSVREDLLRQLSSEGTG---A--L----SSTVSSSKYRLRTSVLQAPHG-D------LVG----CM 139 (795)
Q Consensus 80 ~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~---~--g----~~tv~~~r~k~Ritfie~~~~-d------l~~----~L 139 (795)
..|+|+|.++.+.. +| +..|++.... . | .....+.-...+++++..+ . + ... ..
T Consensus 24 ~~V~lvG~~nvGKS-TL----~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~-G~~~~~~~~~~~~~~~~~ 97 (456)
T 4dcu_A 24 PVVAIVGRPNVGKS-TI----FNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTG-GIDIGDEPFLAQIRQQAE 97 (456)
T ss_dssp CEEEEECSSSSSHH-HH----HHHHEEEEEC-----------CEEEECTTCSSCCEEECCC-C------CCHHHHHHHHH
T ss_pred CEEEEECCCCCcHH-HH----HHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECC-CCCCcchHHHHHHHHHHH
Confidence 36899999998886 77 5555443211 1 2 1222222224678888877 4 1 111 23
Q ss_pred HHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc
Q 003796 140 EMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT 194 (795)
Q Consensus 140 D~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~ 194 (795)
-+..-||+||||+|+..| +.....+++..|+..|.| ++.|++.+|.
T Consensus 98 ~~~~~ad~il~VvD~~~~--------~~~~d~~l~~~l~~~~~p-vilV~NK~D~ 143 (456)
T 4dcu_A 98 IAMDEADVIIFMVNGREG--------VTAADEEVAKILYRTKKP-VVLAVNKLDN 143 (456)
T ss_dssp HHHHHCSEEEEEEESSSC--------SCHHHHHHHHHHTTCCSC-EEEEEECC--
T ss_pred hhHhhCCEEEEEEeCCCC--------CChHHHHHHHHHHHcCCC-EEEEEECccc
Confidence 345679999999999854 777788999999998988 5556788875
No 95
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=92.02 E-value=0.9 Score=42.44 Aligned_cols=144 Identities=8% Similarity=0.049 Sum_probs=74.8
Q ss_pred CEEEEEecCCCccChhhHHHHHHHh-hccCCC-CCc----ceEEEecCceeeEEEEeCCCC-ChHHH-HHHHhhhceEEE
Q 003796 79 PRVIVLFGLSASVNLNSVREDLLRQ-LSSEGT-GAL----SSTVSSSKYRLRTSVLQAPHG-DLVGC-MEMAKVADLVAF 150 (795)
Q Consensus 79 P~iV~Vvg~~~~~~~~sl~~~lvk~-~~~~~~-~~g----~~tv~~~r~k~Ritfie~~~~-dl~~~-LD~aKvADlVll 150 (795)
++-|+|+|.++.+.. +|++.|+.. +..... +.+ ..++.......+++++.+|-. ....+ ...++-||.+|+
T Consensus 14 ~~~i~v~G~~~~GKs-sli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~ 92 (179)
T 2y8e_A 14 KFKLVFLGEQSVGKT-SLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVV 92 (179)
T ss_dssp EEEEEEEESTTSSHH-HHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEEE
T ss_pred ceEEEEECCCCCCHH-HHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEEE
Confidence 456999999998876 673333321 111111 112 122333433458889988731 23333 345678999999
Q ss_pred eeeCCCccccccccccChHHHHHHHHHHhc---CCCceEEEeccCCcchhh---hHHHHHHHHhhcccccCCCCeeEEeC
Q 003796 151 VASASSFSEESMSYYIDSFGNQCLSVFRSL---GLPSTAVLIRDLPTDLKK---RKDLKKMCISSLTSEFPEDCKFYAAD 224 (795)
Q Consensus 151 ~idas~g~~~~~~~~fe~eg~e~L~~l~aq---G~P~vigVl~~Ld~~~Kk---~~~~kK~lk~~f~~ef~~~~Klf~l~ 224 (795)
++|++.. ..|+.. ...|..+..+ +.| ++.|++..|....+ ....++..+.. +..+|.+|
T Consensus 93 v~d~~~~------~s~~~~-~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~~-------~~~~~~~S 157 (179)
T 2y8e_A 93 VYDITNT------NSFHQT-SKWIDDVRTERGSDVI-IMLVGNKTDLSDKRQVSTEEGERKAKEL-------NVMFIETS 157 (179)
T ss_dssp EEETTCH------HHHHTH-HHHHHHHHHHHTTSSE-EEEEEECGGGGGGCCSCHHHHHHHHHHH-------TCEEEEEB
T ss_pred EEECCCH------HHHHHH-HHHHHHHHHhcCCCCc-EEEEEECCcccccCcCCHHHHHHHHHHc-------CCeEEEEe
Confidence 9999853 223322 2333333332 444 56678887751111 12233333221 45778887
Q ss_pred CH--HHHHHHHHHHhh
Q 003796 225 TK--DELHKFLWLFKE 238 (795)
Q Consensus 225 ~~--~E~~nL~R~Is~ 238 (795)
.. ..+..|...|..
T Consensus 158 a~~~~~i~~l~~~l~~ 173 (179)
T 2y8e_A 158 AKAGYNVKQLFRRVAA 173 (179)
T ss_dssp TTTTBSHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHH
Confidence 42 335556555543
No 96
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=92.00 E-value=0.92 Score=50.47 Aligned_cols=130 Identities=9% Similarity=0.086 Sum_probs=77.2
Q ss_pred CCCEEEEEecCCCccChhhHHHHHHHhhccCCC---CC--c------ceEEEecCceeeEEEEeCCCC-----------C
Q 003796 77 SPPRVIVLFGLSASVNLNSVREDLLRQLSSEGT---GA--L------SSTVSSSKYRLRTSVLQAPHG-----------D 134 (795)
Q Consensus 77 ~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~---~~--g------~~tv~~~r~k~Ritfie~~~~-----------d 134 (795)
..+.-|+|+|.++.+.. +| +..|+.... .. | ...+... .++++++..| . .
T Consensus 173 ~~~~ki~lvG~~nvGKS-SL----in~l~~~~~~~~~~~~gtT~d~~~~~~~~~--~~~~~l~DT~-G~~~~~~~~~~~e 244 (436)
T 2hjg_A 173 EEVIQFCLIGRPNVGKS-SL----VNAMLGEERVIVSNVAGTTRDAVDTSFTYN--QQEFVIVDTA-GMRKKGKVYETTE 244 (436)
T ss_dssp TTCEEEEEECSTTSSHH-HH----HHHHHTSTTEEEC---------CCEEEEET--TEEEEETTHH-HHTCBTTBCCCCS
T ss_pred ccCcEEEEEcCCCCCHH-HH----HHHHhCCCceeecCCCCceeeeeEEEEEEC--CeEEEEEECC-CcCcCccccchHH
Confidence 34677999999998875 77 444433221 11 1 1122222 2456666554 2 2
Q ss_pred hHH---HHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchhh---hHHHHHHHHh
Q 003796 135 LVG---CMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKK---RKDLKKMCIS 208 (795)
Q Consensus 135 l~~---~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~~~Kk---~~~~kK~lk~ 208 (795)
-.+ .+.+.+-||.+|||+|++.| +..+..+++..+...|.| ++.|++..|...+. ....++.+..
T Consensus 245 ~~~~~~~~~~~~~ad~~llv~D~~~~--------~s~~~~~~~~~~~~~~~~-iiiv~NK~Dl~~~~~~~~~~~~~~~~~ 315 (436)
T 2hjg_A 245 KYSVLRALKAIDRSEVVAVVLDGEEG--------IIEQDKRIAGYAHEAGKA-VVIVVNKWDAVDKDESTMKEFEENIRD 315 (436)
T ss_dssp HHHHHHHHHHHHHCSEEEEEEETTTC--------CCHHHHHHHHHHHHTTCE-EEEEEECGGGSCCCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCEEEEEEcCCcC--------CcHHHHHHHHHHHHcCCc-EEEEEECccCCCcchHHHHHHHHHHHH
Confidence 222 34577889999999999965 555666788888888876 55567766641011 2345555555
Q ss_pred hcccccCCCCeeEEeCC
Q 003796 209 SLTSEFPEDCKFYAADT 225 (795)
Q Consensus 209 ~f~~ef~~~~Klf~l~~ 225 (795)
.+... .++.++.+|.
T Consensus 316 ~l~~~--~~~~~~~~SA 330 (436)
T 2hjg_A 316 HFQFL--DYAPILFMSA 330 (436)
T ss_dssp HCGGG--TTSCEEECCT
T ss_pred hcccC--CCCCEEEEec
Confidence 55432 2578888884
No 97
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=91.97 E-value=2.2 Score=46.51 Aligned_cols=104 Identities=13% Similarity=0.129 Sum_probs=59.1
Q ss_pred CCCEEEEEecCCCccChhhHHHHHHHhhccCCCCC--------cc--eEEEecCceeeEEEEeCCC--CC--------hH
Q 003796 77 SPPRVIVLFGLSASVNLNSVREDLLRQLSSEGTGA--------LS--STVSSSKYRLRTSVLQAPH--GD--------LV 136 (795)
Q Consensus 77 ~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~~--------g~--~tv~~~r~k~Ritfie~~~--~d--------l~ 136 (795)
+.| +|+|+|+++.+++ +| ++.+++..... .+ -++..+. ..+.++..+- .+ +.
T Consensus 178 ~~~-~V~lvG~~naGKS-TL----ln~L~~~~~~~~~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~ 249 (364)
T 2qtf_A 178 NIP-SIGIVGYTNSGKT-SL----FNSLTGLTQKVDTKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFF 249 (364)
T ss_dssp -CC-EEEEECBTTSSHH-HH----HHHHHCC-----------CCSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHH
T ss_pred CCc-EEEEECCCCCCHH-HH----HHHHHCCCccccCCcccccCCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHH
Confidence 344 6899999998876 77 55554433210 12 1233333 4677776651 11 35
Q ss_pred HHHHHHhhhceEEEeeeCCCccccccccccChHH---HHHHHHHHhcCCCceEEEeccCCc
Q 003796 137 GCMEMAKVADLVAFVASASSFSEESMSYYIDSFG---NQCLSVFRSLGLPSTAVLIRDLPT 194 (795)
Q Consensus 137 ~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg---~e~L~~l~aqG~P~vigVl~~Ld~ 194 (795)
++++.++.||+||+++|++... ...+..- .++|..+...+.| ++.|++..|.
T Consensus 250 ~tl~~~~~aD~il~VvD~s~~~-----~~~~~~~~~~~~~L~~l~~~~~p-~ilV~NK~Dl 304 (364)
T 2qtf_A 250 VTLSEAKYSDALILVIDSTFSE-----NLLIETLQSSFEILREIGVSGKP-ILVTLNKIDK 304 (364)
T ss_dssp HHHHGGGGSSEEEEEEETTSCH-----HHHHHHHHHHHHHHHHHTCCSCC-EEEEEECGGG
T ss_pred HHHHHHHhCCEEEEEEECCCCc-----chHHHHHHHHHHHHHHhCcCCCC-EEEEEECCCC
Confidence 6778889999999999998530 0012222 3444444444555 6667777664
No 98
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=91.91 E-value=0.5 Score=52.65 Aligned_cols=99 Identities=10% Similarity=0.158 Sum_probs=62.2
Q ss_pred EEEEecCCCccChhhHHHHHHHhhccCCCC--C---cc----eEEEecCceeeEEEEeCCCCC----------hHH-HHH
Q 003796 81 VIVLFGLSASVNLNSVREDLLRQLSSEGTG--A---LS----STVSSSKYRLRTSVLQAPHGD----------LVG-CME 140 (795)
Q Consensus 81 iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~--~---g~----~tv~~~r~k~Ritfie~~~~d----------l~~-~LD 140 (795)
.|+|||.++.++. +| +..|++.... . |. ......-...+++++..+ .- +.. ...
T Consensus 5 ~V~ivG~~nvGKS-tL----~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~-G~~~~~~~~~~~~~~~~~~ 78 (436)
T 2hjg_A 5 VVAIVGRPNVGKS-TI----FNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTG-GIDIGDEPFLAQIRQQAEI 78 (436)
T ss_dssp EEEEECSTTSSHH-HH----HHHHEEEECC-----------CEEEECTTCSSCCEEEC----------CHHHHHHHHHHH
T ss_pred EEEEECCCCCCHH-HH----HHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECC-CCCCcchhHHHHHHHHHHH
Confidence 5899999998876 77 5666543221 1 21 111222123578888776 32 122 244
Q ss_pred HHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc
Q 003796 141 MAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT 194 (795)
Q Consensus 141 ~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~ 194 (795)
+.+-||+||||+|++.| +.....++...|+..+.| ++.|++..|.
T Consensus 79 ~~~~ad~il~vvD~~~~--------~~~~d~~~~~~l~~~~~p-vilv~NK~D~ 123 (436)
T 2hjg_A 79 AMDEADVIIFMVNGREG--------VTAADEEVAKILYRTKKP-VVLAVNKLDN 123 (436)
T ss_dssp HHHHCSEEEEEEETTTC--------SCHHHHHHHHHHTTCCSC-EEEEEECCCC
T ss_pred HHHhCCEEEEEEeCCCC--------CCHHHHHHHHHHHHcCCC-EEEEEECccC
Confidence 66789999999999865 555567788888888887 5667888886
No 99
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.85 E-value=0.45 Score=45.00 Aligned_cols=104 Identities=13% Similarity=0.080 Sum_probs=62.5
Q ss_pred CCCEEEEEecCCCccChhhHHHHHHHhhccCC-----CCCcc--eEEEecCceeeEEEEeCCCC-ChHH-HHHHHhhhce
Q 003796 77 SPPRVIVLFGLSASVNLNSVREDLLRQLSSEG-----TGALS--STVSSSKYRLRTSVLQAPHG-DLVG-CMEMAKVADL 147 (795)
Q Consensus 77 ~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~-----~~~g~--~tv~~~r~k~Ritfie~~~~-dl~~-~LD~aKvADl 147 (795)
..++-|+|+|+++.+.. +| +..++... .+.|. .++... ..+++++..|-. .... .....+-||.
T Consensus 16 ~~~~~i~v~G~~~~GKs-sl----i~~l~~~~~~~~~~t~~~~~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 88 (183)
T 1moz_A 16 NKELRILILGLDGAGKT-TI----LYRLQIGEVVTTKPTIGFNVETLSYK--NLKLNVWDLGGQTSIRPYWRCYYADTAA 88 (183)
T ss_dssp SSCEEEEEEEETTSSHH-HH----HHHTCCSEEEEECSSTTCCEEEEEET--TEEEEEEEEC----CCTTGGGTTTTEEE
T ss_pred CCccEEEEECCCCCCHH-HH----HHHHhcCCcCccCCcCccceEEEEEC--CEEEEEEECCCCHhHHHHHHHHhccCCE
Confidence 45778999999998876 67 55554321 11122 223333 367888887621 1222 2345678999
Q ss_pred EEEeeeCCCccccccccccChHHHHHHHHHHh---cCCCceEEEeccCCc
Q 003796 148 VAFVASASSFSEESMSYYIDSFGNQCLSVFRS---LGLPSTAVLIRDLPT 194 (795)
Q Consensus 148 Vll~idas~g~~~~~~~~fe~eg~e~L~~l~a---qG~P~vigVl~~Ld~ 194 (795)
+|+++|++.. ..|+.....+..+++. .+.| ++.|++..|.
T Consensus 89 ii~v~d~~~~------~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl 131 (183)
T 1moz_A 89 VIFVVDSTDK------DRMSTASKELHLMLQEEELQDAA-LLVFANKQDQ 131 (183)
T ss_dssp EEEEEETTCT------TTHHHHHHHHHHHTTSSTTSSCE-EEEEEECTTS
T ss_pred EEEEEECCCH------HHHHHHHHHHHHHHcChhhCCCe-EEEEEECCCC
Confidence 9999999853 2355444445555543 4554 6777888885
No 100
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=91.85 E-value=0.62 Score=44.63 Aligned_cols=105 Identities=9% Similarity=-0.020 Sum_probs=62.6
Q ss_pred CCEEEEEecCCCccChhhHHHHHHHhhccCCC------CCc----ceEEEecCceeeEEEEeCCCC-ChH-HHHHHHhhh
Q 003796 78 PPRVIVLFGLSASVNLNSVREDLLRQLSSEGT------GAL----SSTVSSSKYRLRTSVLQAPHG-DLV-GCMEMAKVA 145 (795)
Q Consensus 78 pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~------~~g----~~tv~~~r~k~Ritfie~~~~-dl~-~~LD~aKvA 145 (795)
..+-|+|+|.++.+.. +| +..|+.... +.| ..++.......+++++.++-. .+. ......+-|
T Consensus 21 ~~~ki~vvG~~~~GKS-sl----i~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 95 (189)
T 2gf9_A 21 YMFKLLLIGNSSVGKT-SF----LFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGA 95 (189)
T ss_dssp EEEEEEEECSTTSSHH-HH----HHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTC
T ss_pred ceeEEEEECCCCCCHH-HH----HHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCC
Confidence 3456999999998876 77 444433221 112 223333434568889988631 111 123456789
Q ss_pred ceEEEeeeCCCccccccccccChHHHHHHHHHHhcCC--CceEEEeccCCc
Q 003796 146 DLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGL--PSTAVLIRDLPT 194 (795)
Q Consensus 146 DlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~--P~vigVl~~Ld~ 194 (795)
|.+|+++|++.. ..|+. ..+++..+..+.. ..++.|++..|.
T Consensus 96 d~ii~v~d~~~~------~s~~~-~~~~~~~i~~~~~~~~piilv~nK~Dl 139 (189)
T 2gf9_A 96 MGFLLMYDIANQ------ESFAA-VQDWATQIKTYSWDNAQVILVGNKCDL 139 (189)
T ss_dssp SEEEEEEETTCH------HHHHT-HHHHHHHHHHHSCTTCEEEEEEECTTC
T ss_pred CEEEEEEECCCH------HHHHH-HHHHHHHHHHhcCCCCCEEEEEECccc
Confidence 999999999853 22332 3356666666532 346777888885
No 101
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=91.81 E-value=0.5 Score=54.55 Aligned_cols=64 Identities=14% Similarity=0.130 Sum_probs=46.2
Q ss_pred eeEEEEeCCC-CC-----------hHH-HHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEe
Q 003796 123 LRTSVLQAPH-GD-----------LVG-CMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLI 189 (795)
Q Consensus 123 ~Ritfie~~~-~d-----------l~~-~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl 189 (795)
..++|+..|- .+ +.. +...++-||.||+|+|++. .++..+..++|..|+.++.| ++.|+
T Consensus 154 ~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~-------~~~~~~~~~~l~~l~~~~~p-vilVl 225 (550)
T 2qpt_A 154 ESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHK-------LEISDEFSEAIGALRGHEDK-IRVVL 225 (550)
T ss_dssp HHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTS-------CCCCHHHHHHHHHTTTCGGG-EEEEE
T ss_pred CCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCc-------CCCCHHHHHHHHHHHhcCCC-EEEEE
Confidence 3688898873 11 222 3346778999999999974 12455667888988888876 78889
Q ss_pred ccCCc
Q 003796 190 RDLPT 194 (795)
Q Consensus 190 ~~Ld~ 194 (795)
+..|.
T Consensus 226 NK~Dl 230 (550)
T 2qpt_A 226 NKADM 230 (550)
T ss_dssp ECGGG
T ss_pred ECCCc
Confidence 98885
No 102
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=91.79 E-value=0.74 Score=42.97 Aligned_cols=104 Identities=12% Similarity=-0.006 Sum_probs=57.3
Q ss_pred CCEEEEEecCCCccChhhHHHHHHHhhccCCC-----CCc----ceEEEecCceeeEEEEeCCCCCh---HHHHH-HHhh
Q 003796 78 PPRVIVLFGLSASVNLNSVREDLLRQLSSEGT-----GAL----SSTVSSSKYRLRTSVLQAPHGDL---VGCME-MAKV 144 (795)
Q Consensus 78 pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~-----~~g----~~tv~~~r~k~Ritfie~~~~dl---~~~LD-~aKv 144 (795)
++.-|+|+|.++.+.. +| +..|+.... ..| ..++.......++.++..+-..- ..+.. ..+.
T Consensus 3 ~~~ki~i~G~~~vGKS-sl----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~ 77 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKT-SL----ASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQG 77 (175)
T ss_dssp CEEEEEEECCTTSSHH-HH----HHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTS
T ss_pred eEEEEEEECCCCccHH-HH----HHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhccc
Confidence 3566999999998876 77 444433221 112 23344444445788888763221 22222 2356
Q ss_pred hceEEEeeeCCCccccccccccChHHHHHHHHHHh----cCCCceEEEeccCCc
Q 003796 145 ADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRS----LGLPSTAVLIRDLPT 194 (795)
Q Consensus 145 ADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~a----qG~P~vigVl~~Ld~ 194 (795)
||.+|+++|.+.. ..|+.-. +++..|.. .+.| ++.|++..|.
T Consensus 78 ~~~~i~v~d~~~~------~s~~~~~-~~~~~l~~~~~~~~~p-iilv~NK~Dl 123 (175)
T 2nzj_A 78 GSAYVIVYSIADR------GSFESAS-ELRIQLRRTHQADHVP-IILVGNKADL 123 (175)
T ss_dssp CSEEEEEEETTCH------HHHHHHH-HHHHHHHHCC----CC-EEEEEECTTC
T ss_pred CCEEEEEEECCCH------HHHHHHH-HHHHHHHHhhccCCCC-EEEEEEChhh
Confidence 8999999999842 2243222 33443433 3666 6677888875
No 103
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=91.75 E-value=0.92 Score=43.34 Aligned_cols=104 Identities=9% Similarity=0.024 Sum_probs=60.9
Q ss_pred CCEEEEEecCCCccChhhHHHHHHHhhccCCC------CCc----ceEEEecCceeeEEEEeCCCCC-hHH-HHHHHhhh
Q 003796 78 PPRVIVLFGLSASVNLNSVREDLLRQLSSEGT------GAL----SSTVSSSKYRLRTSVLQAPHGD-LVG-CMEMAKVA 145 (795)
Q Consensus 78 pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~------~~g----~~tv~~~r~k~Ritfie~~~~d-l~~-~LD~aKvA 145 (795)
.++-|+|+|.++.+.. +| +..|..... +.+ ..++.......+++|+.+|-.. ... .....+-|
T Consensus 15 ~~~ki~v~G~~~~GKS-sl----i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 89 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKS-CL----LLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGA 89 (196)
T ss_dssp EEEEEEEECSTTSSHH-HH----HHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTC
T ss_pred cceEEEEECcCCCCHH-HH----HHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhC
Confidence 3566999999998876 67 444433221 111 2333344444678888887311 222 34567889
Q ss_pred ceEEEeeeCCCccccccccccChHHHHHHHHHHhc---CCCceEEEeccCCc
Q 003796 146 DLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSL---GLPSTAVLIRDLPT 194 (795)
Q Consensus 146 DlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aq---G~P~vigVl~~Ld~ 194 (795)
|.+|+|+|++.. ..|+.. ...+..+..+ +.| ++.|++..|.
T Consensus 90 d~~i~v~d~~~~------~s~~~~-~~~~~~i~~~~~~~~p-~ilv~nK~Dl 133 (196)
T 3tkl_A 90 HGIIVVYDVTDQ------ESFNNV-KQWLQEIDRYASENVN-KLLVGNKCDL 133 (196)
T ss_dssp SEEEEEEETTCH------HHHHTH-HHHHHHHHHHSCTTCE-EEEEEECTTC
T ss_pred CEEEEEEECcCH------HHHHHH-HHHHHHHHHhcCCCCC-EEEEEECccc
Confidence 999999999853 223322 3355555544 444 4556788775
No 104
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=91.70 E-value=0.6 Score=48.57 Aligned_cols=138 Identities=17% Similarity=0.151 Sum_probs=77.5
Q ss_pred CEEEEEecCCCccChhhHHHHHHHhhccCCCCC----c----ce--EEEecCceeeEEEEeCCC-CChHH---------H
Q 003796 79 PRVIVLFGLSASVNLNSVREDLLRQLSSEGTGA----L----SS--TVSSSKYRLRTSVLQAPH-GDLVG---------C 138 (795)
Q Consensus 79 P~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~~----g----~~--tv~~~r~k~Ritfie~~~-~dl~~---------~ 138 (795)
+..|+|+|.++.+.. +| +..|++..... | +. ++... ..++.++..|- .++.+ .
T Consensus 3 ~~~I~lvG~~n~GKS-TL----in~l~g~~~~v~~~~g~t~~~~~~~~~~~--~~~~~liDtpG~~~~~~~~~~~~~~e~ 75 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKT-TL----FNQLTGSRQRVGNWAGVTVERKEGQFSTT--DHQVTLVDLPGTYSLTTISSQTSLDEQ 75 (274)
T ss_dssp CEEEEEEECTTSSHH-HH----HHHHHTTCEEEEECTTSSSEEEEEEEECS--SCEEEEEECCCCSCSCC----CCHHHH
T ss_pred ccEEEEECCCCCCHH-HH----HHHHhCCCcccCCCCCeeEEEEEEEEEeC--CCceEEEECcCCCccccccccCCHHHH
Confidence 467999999998886 77 55554433110 1 11 12222 35788888863 12221 1
Q ss_pred ----HHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchhh-hHHHHHHHHhhcccc
Q 003796 139 ----MEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKK-RKDLKKMCISSLTSE 213 (795)
Q Consensus 139 ----LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~~~Kk-~~~~kK~lk~~f~~e 213 (795)
.-...-||+||+++|++. ++ ....++..+...|+| ++.|++..|...++ .....+.+.+.+
T Consensus 76 i~~~~~~~~~~d~ii~VvD~~~---------~~-~~~~~~~~l~~~~~p-~ivv~NK~Dl~~~~~~~~~~~~l~~~l--- 141 (274)
T 3i8s_A 76 IACHYILSGDADLLINVVDASN---------LE-RNLYLTLQLLELGIP-CIVALNMLDIAEKQNIRIEIDALSARL--- 141 (274)
T ss_dssp HHHHHHHHTCCSEEEEEEEGGG---------HH-HHHHHHHHHHHHTCC-EEEEEECHHHHHHTTEEECHHHHHHHH---
T ss_pred HHHHHHhhcCCCEEEEEecCCC---------hH-HHHHHHHHHHhcCCC-EEEEEECccchhhhhHHHHHHHHHHhc---
Confidence 112357999999999984 22 234556666777988 56677777741011 000112232222
Q ss_pred cCCCCeeEEeCC--HHHHHHHHHHHhhcc
Q 003796 214 FPEDCKFYAADT--KDELHKFLWLFKEQR 240 (795)
Q Consensus 214 f~~~~Klf~l~~--~~E~~nL~R~Is~~k 240 (795)
+..++.+|. ...+..|...|...-
T Consensus 142 ---g~~~i~~SA~~g~gi~el~~~i~~~~ 167 (274)
T 3i8s_A 142 ---GCPVIPLVSTRGRGIEALKLAIDRYK 167 (274)
T ss_dssp ---TSCEEECCCGGGHHHHHHHHHHHTCC
T ss_pred ---CCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 357888885 345667777776543
No 105
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=91.70 E-value=0.54 Score=44.97 Aligned_cols=104 Identities=10% Similarity=0.043 Sum_probs=63.5
Q ss_pred CCCEEEEEecCCCccChhhHHHHHHHhhccCCC-----CCcc--eEEEecCceeeEEEEeCCCC-ChHHH-HHHHhhhce
Q 003796 77 SPPRVIVLFGLSASVNLNSVREDLLRQLSSEGT-----GALS--STVSSSKYRLRTSVLQAPHG-DLVGC-MEMAKVADL 147 (795)
Q Consensus 77 ~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~-----~~g~--~tv~~~r~k~Ritfie~~~~-dl~~~-LD~aKvADl 147 (795)
..+.-|+|+|.++.+.. +| +..++.... +.|. .++... ..+++++.+|-. ....+ ....+-||.
T Consensus 20 ~~~~~i~v~G~~~~GKs-sl----i~~l~~~~~~~~~~t~~~~~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 92 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKT-SI----LYRLHLGDVVTTVPTVGVNLETLQYK--NISFEVWDLGGQTGVRPYWRCYFSDTDA 92 (189)
T ss_dssp TSCEEEEEEEETTSSHH-HH----HHHTCCSCCEEECSSTTCCEEEEEET--TEEEEEEEECCSSSSCCCCSSSSTTCCE
T ss_pred CCceEEEEECCCCCCHH-HH----HHHHHcCCCCCcCCCCceEEEEEEEC--CEEEEEEECCCCHhHHHHHHHHhhcCCE
Confidence 45677999999998886 77 555543221 1122 223333 467888888621 12221 224567999
Q ss_pred EEEeeeCCCccccccccccChHHHHHHHHHHh---cCCCceEEEeccCCc
Q 003796 148 VAFVASASSFSEESMSYYIDSFGNQCLSVFRS---LGLPSTAVLIRDLPT 194 (795)
Q Consensus 148 Vll~idas~g~~~~~~~~fe~eg~e~L~~l~a---qG~P~vigVl~~Ld~ 194 (795)
+|+|+|++.. ..|+.....+..+++. .+.| ++.|++..|.
T Consensus 93 ii~v~d~~~~------~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl 135 (189)
T 2x77_A 93 VIYVVDSTDR------DRMGVAKHELYALLDEDELRKSL-LLIFANKQDL 135 (189)
T ss_dssp EEEEEETTCC------TTHHHHHHHHHHHHTCSTTTTCE-EEEEEECTTS
T ss_pred EEEEEeCCCH------HHHHHHHHHHHHHHhhhhcCCCe-EEEEEECCCC
Confidence 9999999853 3355555555566554 3555 6777888885
No 106
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=91.48 E-value=1.7 Score=41.93 Aligned_cols=77 Identities=14% Similarity=0.144 Sum_probs=45.7
Q ss_pred CEEEEEecCCCccChhhHHHHHHHhhccCC-----CCCcceEEEe-cCceeeEEEEeCCC-CChHHH----HHHHhhhce
Q 003796 79 PRVIVLFGLSASVNLNSVREDLLRQLSSEG-----TGALSSTVSS-SKYRLRTSVLQAPH-GDLVGC----MEMAKVADL 147 (795)
Q Consensus 79 P~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~-----~~~g~~tv~~-~r~k~Ritfie~~~-~dl~~~----LD~aKvADl 147 (795)
..=|+|+|.++.+.. +|++.+...+.... .....+.+.. +.....++++..+- ..+..+ -...+-||.
T Consensus 20 ~~ki~~vG~~~vGKT-sLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~ 98 (196)
T 3llu_A 20 KPRILLMGLRRSGKS-SIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFRGTGA 98 (196)
T ss_dssp CCEEEEEESTTSSHH-HHHHHHHSCCCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHHHTCSE
T ss_pred ceEEEEECCCCCCHH-HHHHHHHhcCCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccccccCCE
Confidence 344899999998876 67333232221110 0013333322 13456889998863 223444 367788999
Q ss_pred EEEeeeCCC
Q 003796 148 VAFVASASS 156 (795)
Q Consensus 148 Vll~idas~ 156 (795)
+|||+|++.
T Consensus 99 ~i~v~d~~~ 107 (196)
T 3llu_A 99 LIYVIDAQD 107 (196)
T ss_dssp EEEEEETTS
T ss_pred EEEEEECCC
Confidence 999999985
No 107
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=91.48 E-value=0.97 Score=43.30 Aligned_cols=105 Identities=10% Similarity=-0.022 Sum_probs=61.0
Q ss_pred CCEEEEEecCCCccChhhHHHHHHHhhccCCCC-----C-c----ceEEEecCceeeEEEEeCCC-CChHH-HHHHHhhh
Q 003796 78 PPRVIVLFGLSASVNLNSVREDLLRQLSSEGTG-----A-L----SSTVSSSKYRLRTSVLQAPH-GDLVG-CMEMAKVA 145 (795)
Q Consensus 78 pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~-----~-g----~~tv~~~r~k~Ritfie~~~-~dl~~-~LD~aKvA 145 (795)
.++-|+|+|.++.+.. +| +..|+..... . | ..++..+....+++|+.+|- ..... .....+-|
T Consensus 24 ~~~ki~v~G~~~~GKS-sL----i~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 98 (193)
T 2oil_A 24 FVFKVVLIGESGVGKT-NL----LSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGA 98 (193)
T ss_dssp EEEEEEEESSTTSSHH-HH----HHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTC
T ss_pred cceEEEEECcCCCCHH-HH----HHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccC
Confidence 3456999999998876 77 4444332211 1 2 12333343456788888763 12222 34456789
Q ss_pred ceEEEeeeCCCccccccccccChHHHHHHHHHHhcCC--CceEEEeccCCc
Q 003796 146 DLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGL--PSTAVLIRDLPT 194 (795)
Q Consensus 146 DlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~--P~vigVl~~Ld~ 194 (795)
|.+|||+|++.. ..|+ ....+|..+..+.- ..++.|++..|.
T Consensus 99 d~vi~v~D~~~~------~s~~-~~~~~l~~i~~~~~~~~piilv~nK~Dl 142 (193)
T 2oil_A 99 VGALLVFDLTKH------QTYA-VVERWLKELYDHAEATIVVMLVGNKSDL 142 (193)
T ss_dssp CEEEEEEETTCH------HHHH-THHHHHHHHHTTSCTTCEEEEEEECGGG
T ss_pred CEEEEEEECCCH------HHHH-HHHHHHHHHHHhcCCCCeEEEEEECCCc
Confidence 999999999853 2232 22345555555422 235667888775
No 108
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=91.47 E-value=2.9 Score=40.12 Aligned_cols=110 Identities=10% Similarity=0.069 Sum_probs=61.4
Q ss_pred CCCEEEEEecCCCccChhhHHHHHHHhh-cc-CCCCCcc---eEEEecCceeeEEEEeCCC-CChHHHH-HHHhhhceEE
Q 003796 77 SPPRVIVLFGLSASVNLNSVREDLLRQL-SS-EGTGALS---STVSSSKYRLRTSVLQAPH-GDLVGCM-EMAKVADLVA 149 (795)
Q Consensus 77 ~pP~iV~Vvg~~~~~~~~sl~~~lvk~~-~~-~~~~~g~---~tv~~~r~k~Ritfie~~~-~dl~~~L-D~aKvADlVl 149 (795)
.+++-|+|+|.++.+.. +|++.|+..- .. +..+.+. ..+.......++.|+..|- .....+. ...+-||.+|
T Consensus 12 ~~~~ki~v~G~~~~GKS-sli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i 90 (206)
T 2bov_A 12 LALHKVIMVGSGGVGKS-ALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL 90 (206)
T ss_dssp CCEEEEEEECSTTSSHH-HHHHHHHHSCCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred CceEEEEEECCCCCCHH-HHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEEE
Confidence 34566999999998875 6733333211 01 1111121 2233333345788998873 2333333 4467799999
Q ss_pred EeeeCCCccccccccccCh---HHHHHHHHHHhcCCCceEEEeccCCc
Q 003796 150 FVASASSFSEESMSYYIDS---FGNQCLSVFRSLGLPSTAVLIRDLPT 194 (795)
Q Consensus 150 l~idas~g~~~~~~~~fe~---eg~e~L~~l~aqG~P~vigVl~~Ld~ 194 (795)
+++|++.. ..|+. +-.++++.+...+.| ++.|++..|.
T Consensus 91 ~v~d~~~~------~s~~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl 131 (206)
T 2bov_A 91 CVFSITEM------ESFAATADFREQILRVKEDENVP-FLLVGNKSDL 131 (206)
T ss_dssp EEEETTCH------HHHHHHHHHHHHHHHHTTCSCCC-EEEEEECTTC
T ss_pred EEEECCCH------HHHHHHHHHHHHHHHhcCCCCCC-EEEEEeccCc
Confidence 99999853 22322 223344333334666 6677888885
No 109
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=91.38 E-value=1.7 Score=48.25 Aligned_cols=129 Identities=9% Similarity=0.076 Sum_probs=73.6
Q ss_pred CCCEEEEEecCCCccChhhHHHHHHHhhccCCC-----CC--------cceEEEecCceeeEEEEeCCC-----------
Q 003796 77 SPPRVIVLFGLSASVNLNSVREDLLRQLSSEGT-----GA--------LSSTVSSSKYRLRTSVLQAPH----------- 132 (795)
Q Consensus 77 ~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~-----~~--------g~~tv~~~r~k~Ritfie~~~----------- 132 (795)
..+.-|+|+|+++.+.+ +| ++.+++... .. |.+.+ .. +.++++..+-
T Consensus 178 ~~~~kvaivG~~gvGKS-TL----ln~l~g~~~~~v~~~~gtT~d~~~~~i~~--~g--~~~~l~Dt~G~~~~~~~~~~~ 248 (439)
T 1mky_A 178 TDAIKVAIVGRPNVGKS-TL----FNAILNKERALVSPIPGTTRDPVDDEVFI--DG--RKYVFVDTAGLRRKSRVEPRT 248 (439)
T ss_dssp CSCEEEEEECSTTSSHH-HH----HHHHHTSTTEEECCCC------CCEEEEE--TT--EEEEESSCSCC----------
T ss_pred ccCceEEEECCCCCCHH-HH----HHHHhCCcccccCCCCCCcCCceEEEEEE--CC--EEEEEEECCCCccccccchhh
Confidence 34678999999998886 77 444433221 00 22221 21 2344433320
Q ss_pred ---CChHHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchhh---hHHHHHHH
Q 003796 133 ---GDLVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKK---RKDLKKMC 206 (795)
Q Consensus 133 ---~dl~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~~~Kk---~~~~kK~l 206 (795)
-.....+.+...||.||+++|++.+ +......++..+...|.|- +.|++..|...+. .....+.+
T Consensus 249 ~e~~~~~~~~~~i~~ad~vllv~d~~~~--------~~~~~~~i~~~l~~~~~~~-ilv~NK~Dl~~~~~~~~~~~~~~~ 319 (439)
T 1mky_A 249 VEKYSNYRVVDSIEKADVVVIVLDATQG--------ITRQDQRMAGLMERRGRAS-VVVFNKWDLVVHREKRYDEFTKLF 319 (439)
T ss_dssp -CCSCCHHHHHHHHHCSEEEEEEETTTC--------CCHHHHHHHHHHHHTTCEE-EEEEECGGGSTTGGGCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCCEEEEEEeCCCC--------CCHHHHHHHHHHHHcCCCE-EEEEECccCCCchhhHHHHHHHHH
Confidence 1122346778899999999999865 4444466777788888764 4556666641011 23344455
Q ss_pred HhhcccccCCCCeeEEeCC
Q 003796 207 ISSLTSEFPEDCKFYAADT 225 (795)
Q Consensus 207 k~~f~~ef~~~~Klf~l~~ 225 (795)
...+... .++.++.+|.
T Consensus 320 ~~~~~~~--~~~~~~~~SA 336 (439)
T 1mky_A 320 REKLYFI--DYSPLIFTSA 336 (439)
T ss_dssp HHHCGGG--TTSCEEECBT
T ss_pred HHHhccC--CCCcEEEEEC
Confidence 4444322 2567888883
No 110
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=91.31 E-value=1.3 Score=41.39 Aligned_cols=105 Identities=7% Similarity=0.040 Sum_probs=59.4
Q ss_pred CCEEEEEecCCCccChhhHHHHHHHhhccCCC------CCc----ceEEEecCceeeEEEEeCCCC-ChHHH-HHHHhhh
Q 003796 78 PPRVIVLFGLSASVNLNSVREDLLRQLSSEGT------GAL----SSTVSSSKYRLRTSVLQAPHG-DLVGC-MEMAKVA 145 (795)
Q Consensus 78 pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~------~~g----~~tv~~~r~k~Ritfie~~~~-dl~~~-LD~aKvA 145 (795)
.+.-|+|+|+++.+.. +| +..|..... +.| ..++..+....+++|+.+|-. ....+ ....+-|
T Consensus 6 ~~~~i~v~G~~~~GKS-sl----i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 80 (177)
T 1wms_A 6 SLFKVILLGDGGVGKS-SL----MNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGS 80 (177)
T ss_dssp EEEEEEEECCTTSSHH-HH----HHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTC
T ss_pred ceeEEEEECCCCCCHH-HH----HHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcC
Confidence 3556999999998876 77 444432221 112 223333433458899998732 23333 2445679
Q ss_pred ceEEEeeeCCCccccccccccC---hHHHHHHHHHHh---cCCCceEEEeccCCc
Q 003796 146 DLVAFVASASSFSEESMSYYID---SFGNQCLSVFRS---LGLPSTAVLIRDLPT 194 (795)
Q Consensus 146 DlVll~idas~g~~~~~~~~fe---~eg~e~L~~l~a---qG~P~vigVl~~Ld~ 194 (795)
|.+|+++|++.. ..|+ .+-.++...+.. .+.| ++.|++..|.
T Consensus 81 ~~~i~v~d~~~~------~s~~~~~~~~~~~~~~~~~~~~~~~p-~i~v~nK~Dl 128 (177)
T 1wms_A 81 DCCLLTFSVDDS------QSFQNLSNWKKEFIYYADVKEPESFP-FVILGNKIDI 128 (177)
T ss_dssp SEEEEEEETTCH------HHHHTHHHHHHHHHHHHTCSCTTTSC-EEEEEECTTC
T ss_pred CEEEEEEECcCH------HHHHHHHHHHHHHHHHccccccCCCc-EEEEEECCcc
Confidence 999999999853 2232 223333333321 3444 6677888875
No 111
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.29 E-value=0.36 Score=46.50 Aligned_cols=105 Identities=9% Similarity=-0.010 Sum_probs=60.9
Q ss_pred CCEEEEEecCCCccChhhHHHHHHHhhccCCCC-C---------cceEEEecCceeeEEEEeCCCC-ChH-HHHHHHhhh
Q 003796 78 PPRVIVLFGLSASVNLNSVREDLLRQLSSEGTG-A---------LSSTVSSSKYRLRTSVLQAPHG-DLV-GCMEMAKVA 145 (795)
Q Consensus 78 pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~-~---------g~~tv~~~r~k~Ritfie~~~~-dl~-~~LD~aKvA 145 (795)
..+=|+|+|.++.+.. +| +..|+..... . ...++........++|+.++-. ... -.....+-|
T Consensus 22 ~~~ki~v~G~~~~GKS-sl----i~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 96 (191)
T 3dz8_A 22 YMFKLLIIGNSSVGKT-SF----LFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGA 96 (191)
T ss_dssp ECEEEEEEESTTSSHH-HH----HHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTC
T ss_pred eeeEEEEECCCCcCHH-HH----HHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccC
Confidence 4456999999998876 77 4444332211 1 2233333333456777776521 112 234567789
Q ss_pred ceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCC--ceEEEeccCCc
Q 003796 146 DLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLP--STAVLIRDLPT 194 (795)
Q Consensus 146 DlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P--~vigVl~~Ld~ 194 (795)
|.+|||+|++.. ..|+. ..+++..+..+..+ .++.|++..|.
T Consensus 97 d~~i~v~d~~~~------~s~~~-~~~~~~~i~~~~~~~~piilv~nK~Dl 140 (191)
T 3dz8_A 97 MGFILMYDITNE------ESFNA-VQDWATQIKTYSWDNAQVILVGNKCDM 140 (191)
T ss_dssp CEEEEEEETTCH------HHHHT-HHHHHHHHHHHSCTTCEEEEEEECTTC
T ss_pred CEEEEEEECcCH------HHHHH-HHHHHHHHHHhcCCCCCEEEEEECCCC
Confidence 999999999853 23432 23466666664322 25666788885
No 112
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=91.29 E-value=0.93 Score=50.57 Aligned_cols=101 Identities=13% Similarity=0.196 Sum_probs=67.2
Q ss_pred CCCEEEEEecCCCccChhhHHHHHHHhhccCCCC---C--c------ceEEEecCceeeEEEEeCCC-C--------ChH
Q 003796 77 SPPRVIVLFGLSASVNLNSVREDLLRQLSSEGTG---A--L------SSTVSSSKYRLRTSVLQAPH-G--------DLV 136 (795)
Q Consensus 77 ~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~---~--g------~~tv~~~r~k~Ritfie~~~-~--------dl~ 136 (795)
...+-|+|+|..+.+++ +| +..|+..+.. . | ..++.... ..++.|+.+|- . .+.
T Consensus 32 ~~~~kI~IvG~~~vGKS-TL----in~L~~~~~~~~~~~~gtT~d~~~~~~~~~~-~~~l~liDTpG~~d~~~l~~~~~~ 105 (423)
T 3qq5_A 32 GFRRYIVVAGRRNVGKS-SF----MNALVGQNVSIVSDYAGTTTDPVYKSMELHP-IGPVTLVDTPGLDDVGELGRLRVE 105 (423)
T ss_dssp CCCEEEEEECSCSTTTT-TT----TTSSCC-------------CCCCEEEEEETT-TEEEEEEECSSTTCCCTTCCCCHH
T ss_pred CCCEEEEEECCCCCCHH-HH----HHHHHcCCCCccCCCCCeeeeeEEEEEEECC-CCeEEEEECcCCCcccchhHHHHH
Confidence 34567999999987775 56 5555443321 1 1 12222222 23889998873 1 234
Q ss_pred HHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc
Q 003796 137 GCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT 194 (795)
Q Consensus 137 ~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~ 194 (795)
.++.+..-||.+|+|+|++ +.....+++..++..++| ++.|++..|.
T Consensus 106 ~~~~~l~~aD~vllVvD~~----------~~~~~~~~l~~l~~~~~p-iIvV~NK~Dl 152 (423)
T 3qq5_A 106 KARRVFYRADCGILVTDSA----------PTPYEDDVVNLFKEMEIP-FVVVVNKIDV 152 (423)
T ss_dssp HHHHHHTSCSEEEEECSSS----------CCHHHHHHHHHHHHTTCC-EEEECCCCTT
T ss_pred HHHHHHhcCCEEEEEEeCC----------ChHHHHHHHHHHHhcCCC-EEEEEeCcCC
Confidence 4577788899999999994 456678899999999998 6677888885
No 113
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=91.25 E-value=0.69 Score=42.87 Aligned_cols=102 Identities=11% Similarity=0.020 Sum_probs=51.0
Q ss_pred EEEEecCCCccChhhHHHHHHHhhccCCCCC-----cc---eEEEecCceeeEEEEeCCCCC-hHHH-HHHHhhhceEEE
Q 003796 81 VIVLFGLSASVNLNSVREDLLRQLSSEGTGA-----LS---STVSSSKYRLRTSVLQAPHGD-LVGC-MEMAKVADLVAF 150 (795)
Q Consensus 81 iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~~-----g~---~tv~~~r~k~Ritfie~~~~d-l~~~-LD~aKvADlVll 150 (795)
=|+|+|.++.+.. +| ++.|++..... |. .++.......++.++..+-.. ...+ -...+-||.+|+
T Consensus 4 ki~~vG~~~~GKS-sl----i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 78 (166)
T 3q72_A 4 KVLLLGAPGVGKS-AL----ARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVI 78 (166)
T ss_dssp EEEEEESTTSSHH-HH----HHHHCCC----------CEEEEEEEETTEEEEEEEEECC---------------CCEEEE
T ss_pred EEEEECCCCCCHH-HH----HHHHcCccccCCCCccccceEEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEE
Confidence 4899999998876 77 56565432211 11 223334445677788775211 2222 234578999999
Q ss_pred eeeCCCccccccccccChHHHHHHHHHH---hcCCCceEEEeccCCc
Q 003796 151 VASASSFSEESMSYYIDSFGNQCLSVFR---SLGLPSTAVLIRDLPT 194 (795)
Q Consensus 151 ~idas~g~~~~~~~~fe~eg~e~L~~l~---aqG~P~vigVl~~Ld~ 194 (795)
++|.+.. ..|+.-...+..+++ ..+.| ++.|++..|.
T Consensus 79 v~d~~~~------~s~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl 118 (166)
T 3q72_A 79 VYSVTDK------GSFEKASELRVQLRRARQTDDVP-IILVGNKSDL 118 (166)
T ss_dssp EEETTCH------HHHHHHHHHHHHHHHCC---CCC-EEEEEECTTC
T ss_pred EEECCCH------HHHHHHHHHHHHHHHhcCCCCCC-EEEEEecccc
Confidence 9999842 234433332233333 24555 4566787774
No 114
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=91.16 E-value=0.83 Score=46.56 Aligned_cols=103 Identities=10% Similarity=0.015 Sum_probs=58.6
Q ss_pred CCCEEEEEecCCCccChhhHHHHHHHhhccCCCC-----CcceEE-----EecCceeeEEEEeCCCCC------------
Q 003796 77 SPPRVIVLFGLSASVNLNSVREDLLRQLSSEGTG-----ALSSTV-----SSSKYRLRTSVLQAPHGD------------ 134 (795)
Q Consensus 77 ~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~-----~g~~tv-----~~~r~k~Ritfie~~~~d------------ 134 (795)
..+.-|+|+|.++.+.. +| +..|...... .+++|. ...-...++.|+..| .-
T Consensus 20 ~~~~~I~lvG~~g~GKS-tl----~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTp-G~~~~~~~~~~~~~ 93 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKS-AA----GNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTP-DMFSWKDHCEALYK 93 (260)
T ss_dssp -CCEEEEEEECTTSCHH-HH----HHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECC-GGGGSSCCCHHHHH
T ss_pred CCceEEEEECCCCCCHH-HH----HHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECc-CCCCCCCCHHHHHH
Confidence 45677999999998876 67 3333332210 011221 111113689999887 31
Q ss_pred --hHHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhc-----CCCceEEEeccCCc
Q 003796 135 --LVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSL-----GLPSTAVLIRDLPT 194 (795)
Q Consensus 135 --l~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aq-----G~P~vigVl~~Ld~ 194 (795)
...+...++.||.+|+|+|++. |+.....++..|... +.|.++.|-+..|.
T Consensus 94 ~i~~~~~~~~~~~d~il~V~d~~~---------~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl 151 (260)
T 2xtp_A 94 EVQRCYLLSAPGPHVLLLVTQLGR---------YTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDL 151 (260)
T ss_dssp HHHHHHHHHTTCCSEEEEEEETTC---------CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGG
T ss_pred HHHHHHHhcCCCCcEEEEEEeCCC---------CCHHHHHHHHHHHHHhCchhhccEEEEEEccccc
Confidence 1122234567999999999972 555566666666554 55654444336664
No 115
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=91.13 E-value=0.69 Score=50.06 Aligned_cols=89 Identities=9% Similarity=0.099 Sum_probs=49.6
Q ss_pred eeEEEEeCCCCChHHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchh-hhHH
Q 003796 123 LRTSVLQAPHGDLVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLK-KRKD 201 (795)
Q Consensus 123 ~Ritfie~~~~dl~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~~~K-k~~~ 201 (795)
..+.|+.++ .--.+...++..||+||+|+|++.+ ..+..... +...+| ++.|++..|...+ ....
T Consensus 172 ~~~iiiDTp-Gi~~~~~~~~~~aD~vl~V~d~~~~------~~~~~l~~------~~~~~p-~ivVlNK~Dl~~~~~~~~ 237 (355)
T 3p32_A 172 FDVILIETV-GVGQSEVAVANMVDTFVLLTLARTG------DQLQGIKK------GVLELA-DIVVVNKADGEHHKEARL 237 (355)
T ss_dssp CCEEEEEEC-SCSSHHHHHHTTCSEEEEEEESSTT------CTTTTCCT------TSGGGC-SEEEEECCCGGGHHHHHH
T ss_pred CCEEEEeCC-CCCcHHHHHHHhCCEEEEEECCCCC------ccHHHHHH------hHhhcC-CEEEEECCCCcChhHHHH
Confidence 568889887 6445566677999999999998864 11111000 112234 4667888885212 1223
Q ss_pred HHHHHHhhcccccC----CCCeeEEeCC
Q 003796 202 LKKMCISSLTSEFP----EDCKFYAADT 225 (795)
Q Consensus 202 ~kK~lk~~f~~ef~----~~~Klf~l~~ 225 (795)
..+.++..+...-+ -+..++.+|.
T Consensus 238 ~~~~l~~~l~~~~~~~~~~~~~vi~iSA 265 (355)
T 3p32_A 238 AARELSAAIRLIYPREALWRPPVLTMSA 265 (355)
T ss_dssp HHHHHHHHHHHHSTTCCSCCCCEEEEBG
T ss_pred HHHHHHHHHhhccccccCCCCceEEEEc
Confidence 34444444321111 1457888884
No 116
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=91.12 E-value=1 Score=43.23 Aligned_cols=144 Identities=12% Similarity=0.110 Sum_probs=75.2
Q ss_pred CCEEEEEecCCCccChhhHHHHHHHhh-c-cCCCCCcc---eEEEecCceeeEEEEeCCCC-ChHHHHHHHhhhceEEEe
Q 003796 78 PPRVIVLFGLSASVNLNSVREDLLRQL-S-SEGTGALS---STVSSSKYRLRTSVLQAPHG-DLVGCMEMAKVADLVAFV 151 (795)
Q Consensus 78 pP~iV~Vvg~~~~~~~~sl~~~lvk~~-~-~~~~~~g~---~tv~~~r~k~Ritfie~~~~-dl~~~LD~aKvADlVll~ 151 (795)
..+-|+|+|.++.+.. +|++.++..- . .+..+.+. .++......-.+.++..+-. ...++....+-||.+|++
T Consensus 20 ~~~ki~vvG~~~vGKT-sLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~ilv 98 (187)
T 3c5c_A 20 LEVNLAILGRRGAGKS-ALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNCERYLNWAHAFLVV 98 (187)
T ss_dssp CEEEEEEECCTTSSHH-HHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCCTHHHHTTCSEEEEE
T ss_pred ceEEEEEECCCCCcHH-HHHHHHHhCCCCcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchhHHHHHhhCCEEEEE
Confidence 3456999999998876 6733333211 0 01111121 22333434457778877621 122344577889999999
Q ss_pred eeCCCccccccccccChHHHHHHHHHHh------cCCCceEEEeccCCcchhh---hHHHHHHHHhhcccccCCCCeeEE
Q 003796 152 ASASSFSEESMSYYIDSFGNQCLSVFRS------LGLPSTAVLIRDLPTDLKK---RKDLKKMCISSLTSEFPEDCKFYA 222 (795)
Q Consensus 152 idas~g~~~~~~~~fe~eg~e~L~~l~a------qG~P~vigVl~~Ld~~~Kk---~~~~kK~lk~~f~~ef~~~~Klf~ 222 (795)
+|.+.. ..|+.- .+.|..+.. .+.| ++.|++..|....+ ....++..+.. +..+|.
T Consensus 99 ~d~~~~------~s~~~~-~~~~~~i~~~~~~~~~~~p-iilv~nK~Dl~~~~~v~~~~~~~~~~~~-------~~~~~e 163 (187)
T 3c5c_A 99 YSVDSR------QSFDSS-SSYLELLALHAKETQRSIP-ALLLGNKLDMAQYRQVTKAEGVALAGRF-------GCLFFE 163 (187)
T ss_dssp EETTCH------HHHHHH-HHHHHHHHHHHHHHCCCCC-EEEEEECGGGGGGCSSCHHHHHHHHHHH-------TCEEEE
T ss_pred EECCCH------HHHHHH-HHHHHHHHHHhhccCCCCC-EEEEEECcchhhcCccCHHHHHHHHHHc-------CCcEEE
Confidence 999843 234332 233444433 3666 66777877751111 12233333221 356777
Q ss_pred eCC-H--HHHHHHHHHHh
Q 003796 223 ADT-K--DELHKFLWLFK 237 (795)
Q Consensus 223 l~~-~--~E~~nL~R~Is 237 (795)
+|. . ..+..|...|.
T Consensus 164 ~Sa~~~g~gv~~lf~~l~ 181 (187)
T 3c5c_A 164 VSACLDFEHVQHVFHEAV 181 (187)
T ss_dssp CCSSSCSHHHHHHHHHHH
T ss_pred EeecCccccHHHHHHHHH
Confidence 775 2 34555555554
No 117
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=91.11 E-value=0.69 Score=44.73 Aligned_cols=106 Identities=12% Similarity=0.107 Sum_probs=58.9
Q ss_pred CCCEEEEEecCCCccChhhHHHHHHHhhccCCCC------Cc----ceEEEecCceeeEEEEeCCCCC-hHH-HHHHHhh
Q 003796 77 SPPRVIVLFGLSASVNLNSVREDLLRQLSSEGTG------AL----SSTVSSSKYRLRTSVLQAPHGD-LVG-CMEMAKV 144 (795)
Q Consensus 77 ~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~------~g----~~tv~~~r~k~Ritfie~~~~d-l~~-~LD~aKv 144 (795)
.+++-|+|+|.++.+.. +| +..|...... .| ..++.......+++|+..|-.. +.. .....+-
T Consensus 6 ~~~~ki~v~G~~~~GKS-sl----i~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 80 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKT-SL----MNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRG 80 (207)
T ss_dssp -CEEEEEEECCTTSSHH-HH----HHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTT
T ss_pred CcceEEEEECcCCCCHH-HH----HHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhC
Confidence 45677999999998876 77 4444332211 12 2233333334678888886211 111 2344577
Q ss_pred hceEEEeeeCCCccccccccccC---hHHHHHHHHHHh---cCCCceEEEeccCCc
Q 003796 145 ADLVAFVASASSFSEESMSYYID---SFGNQCLSVFRS---LGLPSTAVLIRDLPT 194 (795)
Q Consensus 145 ADlVll~idas~g~~~~~~~~fe---~eg~e~L~~l~a---qG~P~vigVl~~Ld~ 194 (795)
||.+|+|+|++.+ ..|+ .+-.+++..+.. .+.| ++.|++..|.
T Consensus 81 ~d~~i~v~d~~~~------~s~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl 129 (207)
T 1vg8_A 81 ADCCVLVFDVTAP------NTFKTLDSWRDEFLIQASPRDPENFP-FVVLGNKIDL 129 (207)
T ss_dssp CSEEEEEEETTCH------HHHHTHHHHHHHHHHHHCCSSGGGSC-EEEEEECTTS
T ss_pred CcEEEEEEECCCH------HHHHHHHHHHHHHHHhcccccCCCCc-EEEEEECCCC
Confidence 9999999999853 2232 222233332211 3444 5667888885
No 118
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=91.09 E-value=0.64 Score=43.19 Aligned_cols=106 Identities=7% Similarity=0.007 Sum_probs=57.7
Q ss_pred CCCCEEEEEecCCCccChhhHHHHHHHhhccCCC------CCc----ceEEEecCceeeEEEEeCCCCC-hHHH-HHHHh
Q 003796 76 ASPPRVIVLFGLSASVNLNSVREDLLRQLSSEGT------GAL----SSTVSSSKYRLRTSVLQAPHGD-LVGC-MEMAK 143 (795)
Q Consensus 76 ~~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~------~~g----~~tv~~~r~k~Ritfie~~~~d-l~~~-LD~aK 143 (795)
...++-|+|+|.++.+.. +| +..|..... +.| ..++.......+++++..|-.. ...+ ....+
T Consensus 3 ~~~~~~i~v~G~~~~GKs-sl----i~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~ 77 (170)
T 1z08_A 3 RAYSFKVVLLGEGCVGKT-SL----VLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYR 77 (170)
T ss_dssp -CEEEEEEEECCTTSCHH-HH----HHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSST
T ss_pred CCcceEEEEECcCCCCHH-HH----HHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhc
Confidence 345667999999998876 67 444432211 112 2233344445578888886321 2222 22346
Q ss_pred hhceEEEeeeCCCccccccccccChHHHHHHHHHHh---cCCCceEEEeccCCc
Q 003796 144 VADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRS---LGLPSTAVLIRDLPT 194 (795)
Q Consensus 144 vADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~a---qG~P~vigVl~~Ld~ 194 (795)
-||.+|+++|++.. ..|+. ...+|..++. .+.| ++.|++..|.
T Consensus 78 ~~d~~i~v~d~~~~------~s~~~-~~~~~~~~~~~~~~~~p-iilv~nK~Dl 123 (170)
T 1z08_A 78 DSNGAILVYDITDE------DSFQK-VKNWVKELRKMLGNEIC-LCIVGNKIDL 123 (170)
T ss_dssp TCSEEEEEEETTCH------HHHHH-HHHHHHHHHHHHGGGSE-EEEEEECGGG
T ss_pred cCCEEEEEEECcCH------HHHHH-HHHHHHHHHHhcCCCCe-EEEEEECccc
Confidence 79999999999853 22332 2233444433 3433 5667888775
No 119
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=90.94 E-value=0.95 Score=46.70 Aligned_cols=100 Identities=13% Similarity=0.035 Sum_probs=57.1
Q ss_pred CEEEEEecCCCccChhhHHHHHHHhhccCCCCC----c----ceEEEecCceeeEEEEeCCC-CChHH------H-HHH-
Q 003796 79 PRVIVLFGLSASVNLNSVREDLLRQLSSEGTGA----L----SSTVSSSKYRLRTSVLQAPH-GDLVG------C-MEM- 141 (795)
Q Consensus 79 P~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~~----g----~~tv~~~r~k~Ritfie~~~-~dl~~------~-LD~- 141 (795)
+.-|+|+|.++.+.. +| +..|++..... | ..+.........++++..|- .++.+ + -+.
T Consensus 5 ~~kI~lvG~~nvGKT-sL----~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~ 79 (258)
T 3a1s_A 5 MVKVALAGCPNVGKT-SL----FNALTGTKQYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYL 79 (258)
T ss_dssp EEEEEEECCTTSSHH-HH----HHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHH-HH----HHHHHCCCCcccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHH
Confidence 456999999998886 77 45554422110 1 11111111135888998873 11211 1 112
Q ss_pred -HhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc
Q 003796 142 -AKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT 194 (795)
Q Consensus 142 -aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~ 194 (795)
..-+|+||+++|++. ++. ...++..+...|.| ++.|++..|.
T Consensus 80 ~~~~~d~ii~V~D~t~---------~~~-~~~~~~~l~~~~~p-vilv~NK~Dl 122 (258)
T 3a1s_A 80 LKGDADLVILVADSVN---------PEQ-SLYLLLEILEMEKK-VILAMTAIDE 122 (258)
T ss_dssp HHSCCSEEEEEEETTS---------CHH-HHHHHHHHHTTTCC-EEEEEECHHH
T ss_pred hhcCCCEEEEEeCCCc---------hhh-HHHHHHHHHhcCCC-EEEEEECcCC
Confidence 256999999999985 322 23355556667888 4556777664
No 120
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=90.62 E-value=1.6 Score=41.58 Aligned_cols=107 Identities=11% Similarity=0.029 Sum_probs=60.1
Q ss_pred CCCCEEEEEecCCCccChhhHHHHHHHhhccCC------CCCcc---eEEEecCceeeEEEEeCCCCC-hHHHH-HHHhh
Q 003796 76 ASPPRVIVLFGLSASVNLNSVREDLLRQLSSEG------TGALS---STVSSSKYRLRTSVLQAPHGD-LVGCM-EMAKV 144 (795)
Q Consensus 76 ~~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~------~~~g~---~tv~~~r~k~Ritfie~~~~d-l~~~L-D~aKv 144 (795)
...+.-|+|+|.++.+.. +| +..|.... .+.+. .++........+.++.++-.. ...+. ...+-
T Consensus 4 ~~~~~ki~v~G~~~vGKS-sl----i~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 78 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKT-AL----LHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPD 78 (184)
T ss_dssp --CEEEEEEEESTTSSHH-HH----HHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTT
T ss_pred CceEEEEEEECCCCCCHH-HH----HHHHhcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhcCC
Confidence 345566999999998876 77 44443221 11121 122333345678888887221 22222 24577
Q ss_pred hceEEEeeeCCCccccccccccChHHHHHHHHHHhc--CCCceEEEeccCCc
Q 003796 145 ADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSL--GLPSTAVLIRDLPT 194 (795)
Q Consensus 145 ADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aq--G~P~vigVl~~Ld~ 194 (795)
||.+||++|++.. ..|+.--..++..++.+ +.| ++.|++..|.
T Consensus 79 ~~~~i~v~d~~~~------~s~~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl 123 (184)
T 1m7b_A 79 SDAVLICFDISRP------ETLDSVLKKWKGEIQEFCPNTK-MLLVGCKSDL 123 (184)
T ss_dssp CSEEEEEEETTCH------HHHHHHHHTHHHHHHHHCTTCE-EEEEEECGGG
T ss_pred CcEEEEEEECCCH------HHHHHHHHHHHHHHHHHCCCCC-EEEEEEcchh
Confidence 9999999999853 22433223344555443 444 6667788775
No 121
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=90.57 E-value=2.3 Score=50.45 Aligned_cols=63 Identities=17% Similarity=0.258 Sum_probs=52.8
Q ss_pred eeEEEEeCCC-CC-hHHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc
Q 003796 123 LRTSVLQAPH-GD-LVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT 194 (795)
Q Consensus 123 ~Ritfie~~~-~d-l~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~ 194 (795)
.+|.+|-+|- -| ...+.-+..++|-+|+||||..| ++..|+.+|+.+...|+|.+ .||+.+|.
T Consensus 85 ~~iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveG--------V~~qT~~v~~~a~~~~lp~i-~~iNKiDr 149 (709)
T 4fn5_A 85 YRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSG--------VEPQSETVWRQANKYGVPRI-VYVNKMDR 149 (709)
T ss_dssp EEEEEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTC--------SCHHHHHHHHHHHHHTCCEE-EEEECSSS
T ss_pred EEEEEEeCCCCcccHHHHHHHHHHhCeEEEEEECCCC--------CchhHHHHHHHHHHcCCCeE-EEEccccc
Confidence 5799999872 34 34588889999999999999965 89999999999999999965 46788874
No 122
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=90.50 E-value=0.96 Score=47.35 Aligned_cols=62 Identities=16% Similarity=0.134 Sum_probs=42.1
Q ss_pred eeEEEEeCCCCC-----------h-----HHHHHHHhhhceEEEeeeC-CCccccccccccC-hHHHHHHHHHHhcCCCc
Q 003796 123 LRTSVLQAPHGD-----------L-----VGCMEMAKVADLVAFVASA-SSFSEESMSYYID-SFGNQCLSVFRSLGLPS 184 (795)
Q Consensus 123 ~Ritfie~~~~d-----------l-----~~~LD~aKvADlVll~ida-s~g~~~~~~~~fe-~eg~e~L~~l~aqG~P~ 184 (795)
..++|+..| .- + .....+.+-||.+||++|+ +.+ +. .+...++..+...|.|
T Consensus 131 ~~~~lvDTp-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~--------~~~~~~~~i~~~~~~~~~~- 200 (315)
T 1jwy_B 131 VNLTLVDLP-GITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTD--------LANSDALQLAKEVDPEGKR- 200 (315)
T ss_dssp CSEEEEECC-CCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSC--------STTCSHHHHHHHHCSSCSS-
T ss_pred CCcEEEECC-CCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcc--------hhhhHHHHHHHHhCCCCCc-
Confidence 468888876 31 1 2244566789999999997 432 32 2235788888878876
Q ss_pred eEEEeccCCc
Q 003796 185 TAVLIRDLPT 194 (795)
Q Consensus 185 vigVl~~Ld~ 194 (795)
++.|++..|.
T Consensus 201 ~i~v~NK~Dl 210 (315)
T 1jwy_B 201 TIGVITKLDL 210 (315)
T ss_dssp EEEEEECTTS
T ss_pred EEEEEcCccc
Confidence 5678888885
No 123
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=90.43 E-value=1.3 Score=42.50 Aligned_cols=105 Identities=9% Similarity=-0.012 Sum_probs=61.1
Q ss_pred CCCEEEEEecCCCccChhhHHHHHHHhhccCCCC------Cc----ceEEEecCceeeEEEEeCCCCC-hHH-HHHHHhh
Q 003796 77 SPPRVIVLFGLSASVNLNSVREDLLRQLSSEGTG------AL----SSTVSSSKYRLRTSVLQAPHGD-LVG-CMEMAKV 144 (795)
Q Consensus 77 ~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~------~g----~~tv~~~r~k~Ritfie~~~~d-l~~-~LD~aKv 144 (795)
.+++-|+|+|.++.+.. +| +..|+..... .| ..++.......+++++..+-.. +.. .....+-
T Consensus 19 ~~~~ki~v~G~~~~GKS-sl----i~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 93 (191)
T 2a5j_A 19 SYLFKYIIIGDTGVGKS-CL----LLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRG 93 (191)
T ss_dssp CEEEEEEEESSTTSSHH-HH----HHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTT
T ss_pred CcceEEEEECcCCCCHH-HH----HHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhcc
Confidence 34455999999998876 67 4444322211 11 2234444445678888876211 111 3456678
Q ss_pred hceEEEeeeCCCccccccccccChHHHHHHHHHHhc---CCCceEEEeccCCc
Q 003796 145 ADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSL---GLPSTAVLIRDLPT 194 (795)
Q Consensus 145 ADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aq---G~P~vigVl~~Ld~ 194 (795)
||.+||++|++.. ..|+. ...+|..+..+ +.| ++.|++..|.
T Consensus 94 ~d~ii~v~d~~~~------~s~~~-~~~~l~~i~~~~~~~~p-iilv~nK~Dl 138 (191)
T 2a5j_A 94 AAGALLVYDITRR------ETFNH-LTSWLEDARQHSSSNMV-IMLIGNKSDL 138 (191)
T ss_dssp CSEEEEEEETTCH------HHHHT-HHHHHHHHHHHSCTTCE-EEEEEECTTC
T ss_pred CCEEEEEEECCCH------HHHHH-HHHHHHHHHHhcCCCCC-EEEEEECccc
Confidence 9999999999853 22332 23455555554 333 5667888885
No 124
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=90.29 E-value=4.8 Score=38.85 Aligned_cols=105 Identities=10% Similarity=0.062 Sum_probs=58.9
Q ss_pred CCCCEEEEEecCCCccChhhHHHHHHHhhccCC-----C-CCcceEEEe-cCceeeEEEEeCCCCC-----------hH-
Q 003796 76 ASPPRVIVLFGLSASVNLNSVREDLLRQLSSEG-----T-GALSSTVSS-SKYRLRTSVLQAPHGD-----------LV- 136 (795)
Q Consensus 76 ~~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~-----~-~~g~~tv~~-~r~k~Ritfie~~~~d-----------l~- 136 (795)
..+...|+|+|+++.++. +| ++.+++.. . ..|.+.+.. -.....+.++..|.-. +.
T Consensus 23 ~~~~~~v~lvG~~g~GKS-TL----l~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~ 97 (210)
T 1pui_A 23 SDTGIEVAFAGRSNAGKS-SA----LNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQR 97 (210)
T ss_dssp CSCSEEEEEEECTTSSHH-HH----HTTTCCC-------------CCEEEEEEETTEEEEECCCCC------CCHHHHHH
T ss_pred CCCCcEEEEECCCCCCHH-HH----HHHHhCCCccccccCCCccceeeEEEEecCCEEEEECcCCcccccCHHHHHHHHH
Confidence 356678999999998886 67 77666543 1 113222110 0011245667665211 11
Q ss_pred ---HHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc
Q 003796 137 ---GCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT 194 (795)
Q Consensus 137 ---~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~ 194 (795)
.++.....+|.+++++|++.+ ......+++..+...|+|.+ .|++..|.
T Consensus 98 ~~~~~~~~~~~~~~~~~v~d~~~~--------~~~~~~~~~~~~~~~~~~~~-~v~nK~D~ 149 (210)
T 1pui_A 98 ALGEYLEKRQSLQGLVVLMDIRHP--------LKDLDQQMIEWAVDSNIAVL-VLLTKADK 149 (210)
T ss_dssp HHHHHHHHCTTEEEEEEEEETTSC--------CCHHHHHHHHHHHHTTCCEE-EEEECGGG
T ss_pred HHHHHHHhhhcccEEEEEEECCCC--------CchhHHHHHHHHHHcCCCeE-EEEecccC
Confidence 222223578999999999864 33334567777778898854 45565553
No 125
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=90.16 E-value=1.9 Score=42.42 Aligned_cols=105 Identities=11% Similarity=0.061 Sum_probs=56.3
Q ss_pred CCEEEEEecCCCccChhhHHHHHHHhhccCC------CCCc---ceEEEecCceeeEEEEeCCCC-ChHHHHH-HHhhhc
Q 003796 78 PPRVIVLFGLSASVNLNSVREDLLRQLSSEG------TGAL---SSTVSSSKYRLRTSVLQAPHG-DLVGCME-MAKVAD 146 (795)
Q Consensus 78 pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~------~~~g---~~tv~~~r~k~Ritfie~~~~-dl~~~LD-~aKvAD 146 (795)
.++-|+|+|.++.+.. +| +..|+... .+.+ ..++.......+++++.++-. .+..+.. ..+-||
T Consensus 33 ~~~ki~vvG~~~vGKS-sl----i~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d 107 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKT-SL----LMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDAS 107 (214)
T ss_dssp CEEEEEEEECTTSSHH-HH----HHHHHC-------CCCCCEEEEEEEEETTEEEEEEEEEC---------------CEE
T ss_pred ceEEEEEECcCCCCHH-HH----HHHHHcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCC
Confidence 3567999999998876 67 44443221 1111 122333444557888888731 2223222 356799
Q ss_pred eEEEeeeCCCccccccccccChHHHHHHHHHHhc--CCCceEEEeccCCc
Q 003796 147 LVAFVASASSFSEESMSYYIDSFGNQCLSVFRSL--GLPSTAVLIRDLPT 194 (795)
Q Consensus 147 lVll~idas~g~~~~~~~~fe~eg~e~L~~l~aq--G~P~vigVl~~Ld~ 194 (795)
.+||++|++.. ..|+.....++..+..+ +.| ++.|++..|.
T Consensus 108 ~~i~v~d~~~~------~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl 150 (214)
T 2j1l_A 108 VLLLCFDVTSP------NSFDNIFNRWYPEVNHFCKKVP-IIVVGCKTDL 150 (214)
T ss_dssp EEEEEEETTCH------HHHHHHHHTHHHHHHHHCSSCC-EEEEEECGGG
T ss_pred EEEEEEECcCH------HHHHHHHHHHHHHHHHhCCCCC-EEEEEEChhh
Confidence 99999999853 23443333455555543 555 5667787775
No 126
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=90.11 E-value=1.1 Score=43.54 Aligned_cols=104 Identities=13% Similarity=0.015 Sum_probs=59.5
Q ss_pred CCCEEEEEecCCCccChhhHHHHHHHhhccCCC------CC----cceEEEecCceeeEEEEeCCCCCh--HH-HHHHHh
Q 003796 77 SPPRVIVLFGLSASVNLNSVREDLLRQLSSEGT------GA----LSSTVSSSKYRLRTSVLQAPHGDL--VG-CMEMAK 143 (795)
Q Consensus 77 ~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~------~~----g~~tv~~~r~k~Ritfie~~~~dl--~~-~LD~aK 143 (795)
..++=|+|+|.++.+.. +| ++.|..... +. ....+..+....+++|+.++ ..- .. .....+
T Consensus 23 ~~~~ki~v~G~~~~GKS-sL----i~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~-G~~~~~~~~~~~~~ 96 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKS-CL----LHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTA-GQERFRSVTRSYYR 96 (200)
T ss_dssp CEEEEEEEEESTTSSHH-HH----HHHHHC------------CCEEEEEEEETTEEEEEEEECCT-THHHHSCCCHHHHT
T ss_pred CcceEEEEECcCCCCHH-HH----HHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCC-CcHhHHHHHHHHhc
Confidence 34566999999998876 67 444432211 11 22333344445688888887 321 11 234567
Q ss_pred hhceEEEeeeCCCccccccccccChHHHHHHHHHHhc---CCCceEEEeccCCc
Q 003796 144 VADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSL---GLPSTAVLIRDLPT 194 (795)
Q Consensus 144 vADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aq---G~P~vigVl~~Ld~ 194 (795)
-||.+||++|++.. ..|+. ...+|..++.+ +.| ++.|++..|.
T Consensus 97 ~~d~~i~v~d~~~~------~s~~~-~~~~~~~~~~~~~~~~p-iilv~nK~Dl 142 (200)
T 2o52_A 97 GAAGALLVYDITSR------ETYNS-LAAWLTDARTLASPNIV-VILCGNKKDL 142 (200)
T ss_dssp TCSEEEEEEETTCH------HHHHT-HHHHHHHHHHHTCTTCE-EEEEEECGGG
T ss_pred cCCEEEEEEECcCH------HHHHH-HHHHHHHHHHhcCCCCc-EEEEEECCCc
Confidence 89999999999853 22322 23444444433 444 5667887775
No 127
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=90.07 E-value=0.79 Score=44.93 Aligned_cols=103 Identities=7% Similarity=-0.042 Sum_probs=59.0
Q ss_pred CEEEEEecCCCccChhhHHHHHHHhhccCCCCC------c----ceEEEecCc----------eeeEEEEeCCCC-ChHH
Q 003796 79 PRVIVLFGLSASVNLNSVREDLLRQLSSEGTGA------L----SSTVSSSKY----------RLRTSVLQAPHG-DLVG 137 (795)
Q Consensus 79 P~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~~------g----~~tv~~~r~----------k~Ritfie~~~~-dl~~ 137 (795)
.+-|+|+|.++.+.. +| +..|+...... + ..++..... ..+++|+.++-. .+..
T Consensus 25 ~~ki~vvG~~~~GKS-sL----i~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~ 99 (217)
T 2f7s_A 25 LIKLLALGDSGVGKT-TF----LYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRS 99 (217)
T ss_dssp EEEEEEESCTTSSHH-HH----HHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHH
T ss_pred eEEEEEECcCCCCHH-HH----HHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHh
Confidence 456999999998876 77 55554433222 1 111222221 457888888621 1222
Q ss_pred -HHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhc----CCCceEEEeccCCc
Q 003796 138 -CMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSL----GLPSTAVLIRDLPT 194 (795)
Q Consensus 138 -~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aq----G~P~vigVl~~Ld~ 194 (795)
.....+-||.+|||+|++.. ..|+ ...++|..+..+ +. .++.|++..|.
T Consensus 100 ~~~~~~~~~d~iilV~D~~~~------~s~~-~~~~~l~~i~~~~~~~~~-piilV~NK~Dl 153 (217)
T 2f7s_A 100 LTTAFFRDAMGFLLMFDLTSQ------QSFL-NVRNWMSQLQANAYCENP-DIVLIGNKADL 153 (217)
T ss_dssp HHHHHHTTCCEEEEEEETTCH------HHHH-HHHHHHHTCCCCCTTTCC-EEEEEEECTTC
T ss_pred HHHHHhcCCCEEEEEEECcCH------HHHH-HHHHHHHHHHHhcCcCCC-CEEEEEECCcc
Confidence 33556789999999999853 1222 122444444442 33 36777888885
No 128
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=89.86 E-value=0.69 Score=47.73 Aligned_cols=135 Identities=13% Similarity=0.067 Sum_probs=74.2
Q ss_pred EEEEecCCCccChhhHHHHHHHhhccCCCCC----c------ceEEEecCceeeEEEEeCCC-CChHH---------HH-
Q 003796 81 VIVLFGLSASVNLNSVREDLLRQLSSEGTGA----L------SSTVSSSKYRLRTSVLQAPH-GDLVG---------CM- 139 (795)
Q Consensus 81 iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~~----g------~~tv~~~r~k~Ritfie~~~-~dl~~---------~L- 139 (795)
-|+++|.++++.. +| +..|++..... | ..++..+ ...++++..|- .++.+ .+
T Consensus 3 kI~lvG~~n~GKS-TL----~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~--~~~~~lvDtpG~~~~~~~~~~~~~~e~i~ 75 (256)
T 3iby_A 3 HALLIGNPNCGKT-TL----FNALTNANQRVGNWPGVTVEKKTGEFLLG--EHLIEITDLPGVYSLVANAEGISQDEQIA 75 (256)
T ss_dssp EEEEEESTTSSHH-HH----HHHHHTTSEEEEECTTSSSEEEEEEEEET--TEEEEEEECCCCSSCC------CHHHHHH
T ss_pred EEEEECCCCCCHH-HH----HHHHHCCCCCccCCCCceEEEEEEEEEEC--CeEEEEEeCCCcccccccccCCCHHHHHH
Confidence 4789999998886 77 44454432110 1 1122222 25888998873 12221 11
Q ss_pred -H--HHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchhh-hHHHHHHHHhhcccccC
Q 003796 140 -E--MAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKK-RKDLKKMCISSLTSEFP 215 (795)
Q Consensus 140 -D--~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~~~Kk-~~~~kK~lk~~f~~ef~ 215 (795)
+ ...-||.||+|+|++. . +....++..|...|.| ++.|++..|...++ .....+.+.+.+
T Consensus 76 ~~~~~~~~~d~vi~VvDas~---------~-~~~~~l~~~l~~~~~p-vilv~NK~Dl~~~~~~~~~~~~l~~~l----- 139 (256)
T 3iby_A 76 AQSVIDLEYDCIINVIDACH---------L-ERHLYLTSQLFELGKP-VVVALNMMDIAEHRGISIDTEKLESLL----- 139 (256)
T ss_dssp HHHHHHSCCSEEEEEEEGGG---------H-HHHHHHHHHHTTSCSC-EEEEEECHHHHHHTTCEECHHHHHHHH-----
T ss_pred HHHHhhCCCCEEEEEeeCCC---------c-hhHHHHHHHHHHcCCC-EEEEEEChhcCCcCCcHHHHHHHHHHc-----
Confidence 1 1256999999999983 2 2234566667777887 55667777741011 001122233333
Q ss_pred CCCeeEEeCC--HHHHHHHHHHHhhc
Q 003796 216 EDCKFYAADT--KDELHKFLWLFKEQ 239 (795)
Q Consensus 216 ~~~Klf~l~~--~~E~~nL~R~Is~~ 239 (795)
+..++.+|. ..-+..|...|...
T Consensus 140 -g~~vi~~SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 140 -GCSVIPIQAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp -CSCEEECBGGGTBSHHHHHHHHHTC
T ss_pred -CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 467888884 33466666666544
No 129
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=89.77 E-value=2.4 Score=41.21 Aligned_cols=104 Identities=9% Similarity=-0.011 Sum_probs=59.7
Q ss_pred CEEEEEecCCCccChhhHHHHHHHhhccCCC------CCc----ceEEEecCceeeEEEEeCCCC-ChHHH-HHHHhhhc
Q 003796 79 PRVIVLFGLSASVNLNSVREDLLRQLSSEGT------GAL----SSTVSSSKYRLRTSVLQAPHG-DLVGC-MEMAKVAD 146 (795)
Q Consensus 79 P~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~------~~g----~~tv~~~r~k~Ritfie~~~~-dl~~~-LD~aKvAD 146 (795)
++-|+|+|.++.++. +| +..|+.... +.| ..++.......++.|+..+-. ....+ ....+-||
T Consensus 29 ~~ki~vvG~~~vGKS-sl----i~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 103 (201)
T 2hup_A 29 LFKLVLVGDASVGKT-CV----VQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSAN 103 (201)
T ss_dssp EEEEEEEECTTSSHH-HH----HHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCS
T ss_pred ceEEEEECcCCCCHH-HH----HHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCC
Confidence 456999999998876 67 444432221 111 223334443468888888632 23333 34567899
Q ss_pred eEEEeeeCCCccccccccccChHHHHHHHHHHhcCC--CceEEEeccCCc
Q 003796 147 LVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGL--PSTAVLIRDLPT 194 (795)
Q Consensus 147 lVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~--P~vigVl~~Ld~ 194 (795)
.+|||+|++.. ..|+.. .++|..+..+.- ..++.|++..|.
T Consensus 104 ~iilv~D~~~~------~s~~~~-~~~~~~i~~~~~~~~piilv~NK~Dl 146 (201)
T 2hup_A 104 GAILAYDITKR------SSFLSV-PHWIEDVRKYAGSNIVQLLIGNKSDL 146 (201)
T ss_dssp EEEEEEETTBH------HHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTC
T ss_pred EEEEEEECCCH------HHHHHH-HHHHHHHHHhcCCCCCEEEEEECCcc
Confidence 99999999843 224322 245555554432 234566788885
No 130
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=89.68 E-value=1.9 Score=48.55 Aligned_cols=104 Identities=11% Similarity=0.061 Sum_probs=62.1
Q ss_pred CEEEEEecCCCccChhhHHHHHHHhhccCCC-----CCcceEEEecCceeeEEEEeCCC-CChHH-HHHHHhhhceEEEe
Q 003796 79 PRVIVLFGLSASVNLNSVREDLLRQLSSEGT-----GALSSTVSSSKYRLRTSVLQAPH-GDLVG-CMEMAKVADLVAFV 151 (795)
Q Consensus 79 P~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~-----~~g~~tv~~~r~k~Ritfie~~~-~dl~~-~LD~aKvADlVll~ 151 (795)
.+-|+|+|.++.++. +| +..|+.... +.|...........+++|+..+- ..+.. .....+-||+||+|
T Consensus 322 ~~ki~lvG~~nvGKS-sL----l~~l~~~~~~~~~~T~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~V 396 (497)
T 3lvq_E 322 EMRILMLGLDAAGKT-TI----LYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFV 396 (497)
T ss_dssp EEEEEEECSTTSSHH-HH----HHHHHHSSCCCCCCCSSEEEEEEESSSCEEEEEEECCCGGGSGGGGGGGTTCCEEEEE
T ss_pred ceeEEEEcCCCCCHH-HH----HHHHhcCCCCCcCCccceeEEEEEeCCEEEEEEECCCcHHHHHHHHHHhccCCEEEEE
Confidence 466999999998876 77 444433221 11333322222245788887762 12222 23356779999999
Q ss_pred eeCCCccccccccccChHHHHHHHHHHh---cCCCceEEEeccCCc
Q 003796 152 ASASSFSEESMSYYIDSFGNQCLSVFRS---LGLPSTAVLIRDLPT 194 (795)
Q Consensus 152 idas~g~~~~~~~~fe~eg~e~L~~l~a---qG~P~vigVl~~Ld~ 194 (795)
+|++.. ..|+.....+..+++. .+.| +|.|++..|.
T Consensus 397 ~D~~~~------~s~~~~~~~~~~~~~~~~~~~~p-~ilv~NK~Dl 435 (497)
T 3lvq_E 397 VDCADR------DRIDEARQELHRIINDREMRDAI-ILIFANKQDL 435 (497)
T ss_dssp EETTCG------GGHHHHHHHHHHHHTSGGGTTCE-EEEEEECCSS
T ss_pred EECcch------hHHHHHHHHHHHHhhhhhcCCCc-EEEEEECCCC
Confidence 999853 3466555555556554 4555 4556777775
No 131
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=89.38 E-value=2.2 Score=40.90 Aligned_cols=106 Identities=9% Similarity=0.052 Sum_probs=47.6
Q ss_pred CEEEEEecCCCccChhhHHHHHHHh---hc-cCCCCCc----ceEEEecCc--eeeEEEEeCCCCC--hHHH-HHHHhhh
Q 003796 79 PRVIVLFGLSASVNLNSVREDLLRQ---LS-SEGTGAL----SSTVSSSKY--RLRTSVLQAPHGD--LVGC-MEMAKVA 145 (795)
Q Consensus 79 P~iV~Vvg~~~~~~~~sl~~~lvk~---~~-~~~~~~g----~~tv~~~r~--k~Ritfie~~~~d--l~~~-LD~aKvA 145 (795)
+.-|+|+|.++.+.. +|++.|+.. +. .+..+.| ..++..+.. ..+++|+.+| .. ...+ ....+-|
T Consensus 20 ~~~i~v~G~~~~GKs-sli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~-G~~~~~~~~~~~~~~~ 97 (208)
T 2yc2_C 20 RCKVAVVGEATVGKS-ALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTA-GSDLYKEQISQYWNGV 97 (208)
T ss_dssp EEEEEEC-----------------------------------CEEEECTTSSEEEEEEEEETT-TTHHHHHHHSTTCCCC
T ss_pred ceEEEEECCCCCCHH-HHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECC-CcHHHHHHHHHHHhhC
Confidence 457999999987775 663322322 11 1111112 223444433 5688999887 43 2222 2335569
Q ss_pred ceEEEeeeCCCccccccccccChHHHHHHHHHHhc------CCCceEEEeccCCc
Q 003796 146 DLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSL------GLPSTAVLIRDLPT 194 (795)
Q Consensus 146 DlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aq------G~P~vigVl~~Ld~ 194 (795)
|.+|||+|++.+ ..|+.. ..+|..+..+ +.| ++.|++..|.
T Consensus 98 d~~i~v~d~~~~------~s~~~~-~~~~~~i~~~~~~~~~~~p-iilv~nK~Dl 144 (208)
T 2yc2_C 98 YYAILVFDVSSM------ESFESC-KAWFELLKSARPDRERPLR-AVLVANKTDL 144 (208)
T ss_dssp CEEEEEEETTCH------HHHHHH-HHHHHHHHHHCSCTTSCCE-EEEEEECC--
T ss_pred cEEEEEEECCCH------HHHHHH-HHHHHHHHHhhcccccCCc-EEEEEECccc
Confidence 999999999853 234332 3555555553 444 6677888886
No 132
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=89.37 E-value=1.8 Score=42.36 Aligned_cols=105 Identities=10% Similarity=-0.006 Sum_probs=58.6
Q ss_pred CCCEEEEEecCCCccChhhHHHHHHHhhccCCCCC------cc----eEEEec-CceeeEEEEeCCCCC-hHH-HHHHHh
Q 003796 77 SPPRVIVLFGLSASVNLNSVREDLLRQLSSEGTGA------LS----STVSSS-KYRLRTSVLQAPHGD-LVG-CMEMAK 143 (795)
Q Consensus 77 ~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~~------g~----~tv~~~-r~k~Ritfie~~~~d-l~~-~LD~aK 143 (795)
..++=|+|+|.++.+.. +| +..|+...... |. ..+... ....+++++..+-.. ... .-...+
T Consensus 9 ~~~~ki~vvG~~~~GKS-sl----i~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 83 (218)
T 4djt_A 9 ELTYKICLIGDGGVGKT-TY----INRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYI 83 (218)
T ss_dssp -CEEEEEEECCTTSSHH-HH----HCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHT
T ss_pred cCccEEEEECCCCCCHH-HH----HHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhh
Confidence 34667999999998876 67 66665332211 21 122211 112568888876211 111 123356
Q ss_pred hhceEEEeeeCCCccccccccccChHHHHHHHHHHh---cCCCceEEEeccCCc
Q 003796 144 VADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRS---LGLPSTAVLIRDLPT 194 (795)
Q Consensus 144 vADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~a---qG~P~vigVl~~Ld~ 194 (795)
-||.+|+++|++.+ ..|+.. .+++..+.. .+.| ++.|++..|.
T Consensus 84 ~~d~~i~v~d~~~~------~s~~~~-~~~~~~~~~~~~~~~p-iilv~nK~Dl 129 (218)
T 4djt_A 84 GASGAILFFDVTSR------ITCQNL-ARWVKEFQAVVGNEAP-IVVCANKIDI 129 (218)
T ss_dssp TCSEEEEEEETTCH------HHHHTH-HHHHHHHHHHHCSSSC-EEEEEECTTC
T ss_pred cCCEEEEEEeCCCH------HHHHHH-HHHHHHHHHhcCCCCC-EEEEEECCCC
Confidence 69999999999864 223222 233344433 3544 6677888886
No 133
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=89.35 E-value=2.6 Score=39.99 Aligned_cols=109 Identities=9% Similarity=0.028 Sum_probs=56.3
Q ss_pred CCEEEEEecCCCccChhhHHHHHHHhh-cc-CCCCCc---ceEEEecCceeeEEEEeCCCCC-hHHH-HHHHhhhceEEE
Q 003796 78 PPRVIVLFGLSASVNLNSVREDLLRQL-SS-EGTGAL---SSTVSSSKYRLRTSVLQAPHGD-LVGC-MEMAKVADLVAF 150 (795)
Q Consensus 78 pP~iV~Vvg~~~~~~~~sl~~~lvk~~-~~-~~~~~g---~~tv~~~r~k~Ritfie~~~~d-l~~~-LD~aKvADlVll 150 (795)
+++-|+|+|.++.+.. +|++.|+..- .. +..+.+ ..++........++++.+|-.+ ...+ -...+-||.+|+
T Consensus 20 ~~~ki~vvG~~~~GKS-sli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 98 (190)
T 3con_A 20 TEYKLVVVGAGGVGKS-ALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 98 (190)
T ss_dssp EEEEEEEECSTTSSHH-HHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----------CTTCSEEEE
T ss_pred ceeEEEEECcCCCCHH-HHHHHHHcCCCccccCCccceEEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEEE
Confidence 4567999999998876 7743333221 00 011111 1223333334568889887322 2332 344678999999
Q ss_pred eeeCCCccccccccccCh---HHHHHHHHHHhcCCCceEEEeccCCc
Q 003796 151 VASASSFSEESMSYYIDS---FGNQCLSVFRSLGLPSTAVLIRDLPT 194 (795)
Q Consensus 151 ~idas~g~~~~~~~~fe~---eg~e~L~~l~aqG~P~vigVl~~Ld~ 194 (795)
++|++.. ..|+. +-.++.......+.| ++.|++..|.
T Consensus 99 v~d~~~~------~s~~~~~~~~~~i~~~~~~~~~p-~ilv~nK~Dl 138 (190)
T 3con_A 99 VFAINNS------KSFADINLYREQIKRVKDSDDVP-MVLVGNKCDL 138 (190)
T ss_dssp EEETTCH------HHHHHHHHHHHHHHHHHTCSCCC-EEEEEECTTC
T ss_pred EEECcCH------HHHHHHHHHHHHHHHHhCCCCCe-EEEEEECCcC
Confidence 9999853 22322 222233333234665 5677888774
No 134
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=89.34 E-value=0.76 Score=44.39 Aligned_cols=107 Identities=14% Similarity=0.089 Sum_probs=60.0
Q ss_pred CCCCEEEEEecCCCccChhhHHHHHHHhhccCC------CCCcc---eEEEecCceeeEEEEeCCCC-ChHHHH-HHHhh
Q 003796 76 ASPPRVIVLFGLSASVNLNSVREDLLRQLSSEG------TGALS---STVSSSKYRLRTSVLQAPHG-DLVGCM-EMAKV 144 (795)
Q Consensus 76 ~~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~------~~~g~---~tv~~~r~k~Ritfie~~~~-dl~~~L-D~aKv 144 (795)
...+.-|+|+|.++.+.. +| +..|.... .+.+. .++......-++.|+.++-. ....+. ...+-
T Consensus 17 ~~~~~ki~~~G~~~~GKs-sl----~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 91 (201)
T 2q3h_A 17 EGRGVKCVLVGDGAVGKT-SL----VVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTN 91 (201)
T ss_dssp ---CEEEEEECSTTSSHH-HH----HHHHHC--------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTT
T ss_pred CCcceEEEEECCCCCCHH-HH----HHHHHhCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCC
Confidence 345667999999998875 67 44443221 11121 12333333457778887621 122222 24567
Q ss_pred hceEEEeeeCCCccccccccccChHHHHHHHHHHhc--CCCceEEEeccCCc
Q 003796 145 ADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSL--GLPSTAVLIRDLPT 194 (795)
Q Consensus 145 ADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aq--G~P~vigVl~~Ld~ 194 (795)
||.+||++|++.. ..|+.-...++..+..+ +.| ++.|++..|.
T Consensus 92 ~~~~i~v~d~~~~------~s~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl 136 (201)
T 2q3h_A 92 TDIFLLCFSVVSP------SSFQNVSEKWVPEIRCHCPKAP-IILVGTQSDL 136 (201)
T ss_dssp CSEEEEEEETTCH------HHHHHHHHTHHHHHHHHCSSSC-EEEEEECGGG
T ss_pred CcEEEEEEECCCH------HHHHHHHHHHHHHHHHhCCCCC-EEEEEECHhh
Confidence 9999999999853 23443333566666654 555 5667787775
No 135
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=89.25 E-value=1.1 Score=43.58 Aligned_cols=104 Identities=9% Similarity=-0.015 Sum_probs=60.1
Q ss_pred CEEEEEecCCCccChhhHHHHHHHhhccCCC------CCc----ceEEEecCceeeEEEEeCCCC-ChHH-HHHHHhhhc
Q 003796 79 PRVIVLFGLSASVNLNSVREDLLRQLSSEGT------GAL----SSTVSSSKYRLRTSVLQAPHG-DLVG-CMEMAKVAD 146 (795)
Q Consensus 79 P~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~------~~g----~~tv~~~r~k~Ritfie~~~~-dl~~-~LD~aKvAD 146 (795)
++-|+|+|.++.+.. +| +..|..... +.| ..++..+....+++++..|-. .... .....+-||
T Consensus 8 ~~ki~v~G~~~~GKS-sl----i~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 82 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKS-CL----LLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSH 82 (206)
T ss_dssp EEEEEEEESTTSSHH-HH----HHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCS
T ss_pred ceEEEEECCCCCCHH-HH----HHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCC
Confidence 456899999998876 77 444432221 111 223444443457888887631 1222 234467799
Q ss_pred eEEEeeeCCCccccccccccChHHHHHHHHHHhcCC--CceEEEeccCCc
Q 003796 147 LVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGL--PSTAVLIRDLPT 194 (795)
Q Consensus 147 lVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~--P~vigVl~~Ld~ 194 (795)
.+|||+|++.. ..|+. ...+|..+..+.. ..++.|++..|.
T Consensus 83 ~vilv~d~~~~------~s~~~-~~~~~~~i~~~~~~~~piilv~nK~Dl 125 (206)
T 2bcg_Y 83 GIIIVYDVTDQ------ESFNG-VKMWLQEIDRYATSTVLKLLVGNKCDL 125 (206)
T ss_dssp EEEEEEETTCH------HHHHH-HHHHHHHHHHHSCTTCEEEEEEECTTC
T ss_pred EEEEEEECcCH------HHHHH-HHHHHHHHHHhcCCCCCEEEEEECCCC
Confidence 99999999853 22322 2334555555442 235667888885
No 136
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=89.24 E-value=1.6 Score=48.45 Aligned_cols=97 Identities=15% Similarity=0.157 Sum_probs=61.6
Q ss_pred EEEEecCCCccChhhHHHHHHHhhccCCC---CC--cc------eEEEecCceeeEEEEeCCCCC-----------hH-H
Q 003796 81 VIVLFGLSASVNLNSVREDLLRQLSSEGT---GA--LS------STVSSSKYRLRTSVLQAPHGD-----------LV-G 137 (795)
Q Consensus 81 iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~---~~--g~------~tv~~~r~k~Ritfie~~~~d-----------l~-~ 137 (795)
.|+|||.++.+.+ +| +..|++... .. |. .++... .+.++++..+ .- +. .
T Consensus 3 ~v~ivG~pnvGKS-tL----~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~--~~~~~l~DT~-G~~~~~~~~~~~~~~~~ 74 (439)
T 1mky_A 3 TVLIVGRPNVGKS-TL----FNKLVKKKKAIVEDEEGVTRDPVQDTVEWY--GKTFKLVDTC-GVFDNPQDIISQKMKEV 74 (439)
T ss_dssp EEEEECCTTSSHH-HH----HHHHHC--------------CCSEEEEEET--TEEEEEEECT-TTTSSGGGCCCHHHHHH
T ss_pred EEEEECCCCCCHH-HH----HHHHhCCCCceecCCCCCccceeeEEEEEC--CeEEEEEECC-CccccccchHHHHHHHH
Confidence 4899999998886 77 444443321 11 21 122222 2578888876 31 11 2
Q ss_pred HHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc
Q 003796 138 CMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT 194 (795)
Q Consensus 138 ~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~ 194 (795)
..-+.+-||+||||+|+..| +.....++...|+..+.| ++.|++..|.
T Consensus 75 ~~~~~~~ad~il~V~D~~~~--------~~~~d~~i~~~l~~~~~p-~ilv~NK~D~ 122 (439)
T 1mky_A 75 TLNMIREADLVLFVVDGKRG--------ITKEDESLADFLRKSTVD-TILVANKAEN 122 (439)
T ss_dssp HHHHHTTCSEEEEEEETTTC--------CCHHHHHHHHHHHHHTCC-EEEEEESCCS
T ss_pred HHHHHHhCCEEEEEEECCCC--------CCHHHHHHHHHHHHcCCC-EEEEEeCCCC
Confidence 34466889999999999865 544556777778888888 5677888886
No 137
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=89.21 E-value=2.6 Score=40.22 Aligned_cols=110 Identities=11% Similarity=0.065 Sum_probs=59.3
Q ss_pred CCCEEEEEecCCCccChhhHHHHHHHhhcc--CCCCCcce---EEEecCceeeEEEEeCCC-CChHH-HHHHHhhhceEE
Q 003796 77 SPPRVIVLFGLSASVNLNSVREDLLRQLSS--EGTGALSS---TVSSSKYRLRTSVLQAPH-GDLVG-CMEMAKVADLVA 149 (795)
Q Consensus 77 ~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~--~~~~~g~~---tv~~~r~k~Ritfie~~~-~dl~~-~LD~aKvADlVl 149 (795)
..+.-|+|+|.++.+.. +|++.|+..-.. +..+.+.. .+.......+++|+..|- .+... .....+-||.+|
T Consensus 6 ~~~~ki~vvG~~~~GKS-sli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 84 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKS-SLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFI 84 (199)
T ss_dssp CCCEEEEEEECTTSSHH-HHHHHHHHSCCCCTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEE
T ss_pred CCeeEEEEECCCCCcHH-HHHHHHHcCCCCCcccCccccceeEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEE
Confidence 44677999999998875 673333321101 01111211 122233345788888863 12223 234567799999
Q ss_pred EeeeCCCccccccccccChHHH--HHHHHHHh--cCCCceEEEeccCCc
Q 003796 150 FVASASSFSEESMSYYIDSFGN--QCLSVFRS--LGLPSTAVLIRDLPT 194 (795)
Q Consensus 150 l~idas~g~~~~~~~~fe~eg~--e~L~~l~a--qG~P~vigVl~~Ld~ 194 (795)
+++|++.. ..|+.... +.|..+.. .+.| ++.|++..|.
T Consensus 85 ~v~d~~~~------~s~~~~~~~~~~i~~~~~~~~~~p-iilv~nK~Dl 126 (199)
T 2gf0_A 85 LVFSVTSK------QSLEELGPIYKLIVQIKGSVEDIP-VMLVGNKCDE 126 (199)
T ss_dssp EEEETTCH------HHHHTTHHHHHHHHHHHSCGGGSC-EEEEEECTTC
T ss_pred EEEECcCH------HHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccC
Confidence 99999853 22332222 22222222 2555 6778888885
No 138
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=89.15 E-value=4 Score=39.03 Aligned_cols=107 Identities=12% Similarity=0.046 Sum_probs=59.1
Q ss_pred CCCCEEEEEecCCCccChhhHHHHHHHhh-cc-CCCCCcc--eEEEecCceeeEEEEeCCCCChHHHHHHHhhhceEEEe
Q 003796 76 ASPPRVIVLFGLSASVNLNSVREDLLRQL-SS-EGTGALS--STVSSSKYRLRTSVLQAPHGDLVGCMEMAKVADLVAFV 151 (795)
Q Consensus 76 ~~pP~iV~Vvg~~~~~~~~sl~~~lvk~~-~~-~~~~~g~--~tv~~~r~k~Ritfie~~~~dl~~~LD~aKvADlVll~ 151 (795)
..+.+-|+|+|.++.+.. +|++.++..- .. +..+.+. .++......-++.++..+-..-.. ..+-||.+|++
T Consensus 17 ~~~~~ki~ivG~~~vGKS-sL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~---~~~~~~~~i~v 92 (184)
T 3ihw_A 17 QGPELKVGIVGNLSSGKS-ALVHRYLTGTYVQEESPEGGRFKKEIVVDGQSYLLLIRDEGGPPELQ---FAAWVDAVVFV 92 (184)
T ss_dssp CCCEEEEEEECCTTSCHH-HHHHHHHHSSCCCCCCTTCEEEEEEEEETTEEEEEEEEECSSSCCHH---HHHHCSEEEEE
T ss_pred CCCeeEEEEECCCCCCHH-HHHHHHhcCCCCCCcCCCcceEEEEEEECCEEEEEEEEECCCChhhh---eecCCCEEEEE
Confidence 345566999999998876 6733222211 00 1111121 234444445677778776322222 66789999999
Q ss_pred eeCCCccccccccccChHHHHHHHHHHhc----CCCceEEEeccCCc
Q 003796 152 ASASSFSEESMSYYIDSFGNQCLSVFRSL----GLPSTAVLIRDLPT 194 (795)
Q Consensus 152 idas~g~~~~~~~~fe~eg~e~L~~l~aq----G~P~vigVl~~Ld~ 194 (795)
+|++.. ..|+.- ..++..+..+ ++| ++.|.+..|.
T Consensus 93 ~d~~~~------~s~~~~-~~~~~~i~~~~~~~~~p-iilv~nK~Dl 131 (184)
T 3ihw_A 93 FSLEDE------ISFQTV-YNYFLRLCSFRNASEVP-MVLVGTQDAI 131 (184)
T ss_dssp EETTCH------HHHHHH-HHHHHHHHTTSCGGGSC-EEEEEECTTC
T ss_pred EECcCH------HHHHHH-HHHHHHHHHhcCCCCCC-EEEEEECccc
Confidence 999853 224332 2344544443 444 4556676664
No 139
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=89.09 E-value=1.5 Score=42.26 Aligned_cols=103 Identities=8% Similarity=-0.008 Sum_probs=61.3
Q ss_pred CEEEEEecCCCccChhhHHHHHHHhhccCCCC------Cc----ceEEEecCceeeEEEEeCCCC-ChHH-HHHHHhhhc
Q 003796 79 PRVIVLFGLSASVNLNSVREDLLRQLSSEGTG------AL----SSTVSSSKYRLRTSVLQAPHG-DLVG-CMEMAKVAD 146 (795)
Q Consensus 79 P~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~------~g----~~tv~~~r~k~Ritfie~~~~-dl~~-~LD~aKvAD 146 (795)
.+=|+|+|.++.+.. +| +..|+..... .| ..++.......+++|+.+|-. .... .....+-||
T Consensus 8 ~~ki~v~G~~~~GKS-sl----i~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 82 (203)
T 1zbd_A 8 MFKILIIGNSSVGKT-SF----LFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAM 82 (203)
T ss_dssp EEEEEEECSTTSSHH-HH----HHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCS
T ss_pred eeEEEEECCCCCCHH-HH----HHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCC
Confidence 355899999998876 77 5545432211 12 223333434568889988732 2222 344567799
Q ss_pred eEEEeeeCCCccccccccccChHHHHHHHHHHhc---CCCceEEEeccCCc
Q 003796 147 LVAFVASASSFSEESMSYYIDSFGNQCLSVFRSL---GLPSTAVLIRDLPT 194 (795)
Q Consensus 147 lVll~idas~g~~~~~~~~fe~eg~e~L~~l~aq---G~P~vigVl~~Ld~ 194 (795)
.+||++|++.. ..|+. ...++..+..+ +.| ++.|++..|.
T Consensus 83 ~ii~v~d~~~~------~s~~~-~~~~~~~i~~~~~~~~p-iilv~nK~Dl 125 (203)
T 1zbd_A 83 GFILMYDITNE------ESFNA-VQDWSTQIKTYSWDNAQ-VLLVGNKCDM 125 (203)
T ss_dssp EEEEEEETTCH------HHHHH-HHHHHHHHHHHSCSSCE-EEEEEECTTC
T ss_pred EEEEEEECcCH------HHHHH-HHHHHHHHHHhcCCCCC-EEEEEECccc
Confidence 99999999853 22332 23455555554 343 5677888885
No 140
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=88.87 E-value=2.1 Score=48.43 Aligned_cols=101 Identities=17% Similarity=0.156 Sum_probs=62.2
Q ss_pred EEEEEecCCCccChhhHHHHHHHhh-ccCC---CCC---cceEEEecCceeeEEEEeCCCCC-----------hHHHHHH
Q 003796 80 RVIVLFGLSASVNLNSVREDLLRQL-SSEG---TGA---LSSTVSSSKYRLRTSVLQAPHGD-----------LVGCMEM 141 (795)
Q Consensus 80 ~iV~Vvg~~~~~~~~sl~~~lvk~~-~~~~---~~~---g~~tv~~~r~k~Ritfie~~~~d-----------l~~~LD~ 141 (795)
.-|+|+|.++.++. +|++.|+..- .... .+. ...++..+. ..++++..+--. +...+..
T Consensus 244 ~kV~ivG~pnvGKS-SLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g--~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~ 320 (482)
T 1xzp_A 244 LRMVIVGKPNVGKS-TLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQE 320 (482)
T ss_dssp EEEEEECCHHHHTC-HHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred CEEEEECcCCCcHH-HHHHHHHCCCCCccCCCCCeeeeeEEEEEecCC--eEEEEEECCCccccchhhHHHHHHHHHHHH
Confidence 56899999998875 7744444321 0000 011 122333332 468888876211 2346788
Q ss_pred HhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc
Q 003796 142 AKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT 194 (795)
Q Consensus 142 aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~ 194 (795)
++-||+||+|+|++.+ ...+..+++..+ .+.| ++.|++..|.
T Consensus 321 ~~~aD~vl~VvD~s~~--------~s~~~~~il~~l--~~~p-iivV~NK~DL 362 (482)
T 1xzp_A 321 IEKADIVLFVLDASSP--------LDEEDRKILERI--KNKR-YLVVINKVDV 362 (482)
T ss_dssp HHHCSEEEEEEETTSC--------CCHHHHHHHHHH--TTSS-EEEEEEECSS
T ss_pred hhcccEEEEEecCCCC--------CCHHHHHHHHHh--cCCC-EEEEEECccc
Confidence 8999999999999853 334456677665 3665 6777888775
No 141
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=88.22 E-value=0.99 Score=42.53 Aligned_cols=108 Identities=12% Similarity=0.011 Sum_probs=61.3
Q ss_pred CEEEEEecCCCccChhhHHHHHHHh-hccCC-CCCc---ceEEEecCceeeEEEEeCCCC-ChHHHH-HHHhhhceEEEe
Q 003796 79 PRVIVLFGLSASVNLNSVREDLLRQ-LSSEG-TGAL---SSTVSSSKYRLRTSVLQAPHG-DLVGCM-EMAKVADLVAFV 151 (795)
Q Consensus 79 P~iV~Vvg~~~~~~~~sl~~~lvk~-~~~~~-~~~g---~~tv~~~r~k~Ritfie~~~~-dl~~~L-D~aKvADlVll~ 151 (795)
..-|+|+|.++.+.. +|++.|... +.... .+.+ ..++......-+++++..|-. ....+. ...+-||.+|++
T Consensus 5 ~~~i~~~G~~~~GKs-sl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v 83 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKT-CLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLIC 83 (186)
T ss_dssp EEEEEEECSTTSSHH-HHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEE
T ss_pred EEEEEEECCCCCCHH-HHHHHHHcCCCCCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEEE
Confidence 456899999998876 673333321 11111 1112 123334444567778888632 122222 245679999999
Q ss_pred eeCCCccccccccccChHHHHHHHHHHhc--CCCceEEEeccCCc
Q 003796 152 ASASSFSEESMSYYIDSFGNQCLSVFRSL--GLPSTAVLIRDLPT 194 (795)
Q Consensus 152 idas~g~~~~~~~~fe~eg~e~L~~l~aq--G~P~vigVl~~Ld~ 194 (795)
+|++.+ ..|+.....++..++.+ +.| ++.|++..|.
T Consensus 84 ~d~~~~------~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl 121 (186)
T 1mh1_A 84 FSLVSP------ASFENVRAKWYPEVRHHCPNTP-IILVGTKLDL 121 (186)
T ss_dssp EETTCH------HHHHHHHHTHHHHHHHHSTTSC-EEEEEECHHH
T ss_pred EECCCh------hhHHHHHHHHHHHHHHhCCCCC-EEEEeEcccc
Confidence 999853 23444333566666655 666 5666777764
No 142
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=88.17 E-value=2 Score=41.60 Aligned_cols=104 Identities=10% Similarity=-0.005 Sum_probs=59.8
Q ss_pred CCEEEEEecCCCccChhhHHHHHHHhhccCCC------CCc----ceEEEecCceeeEEEEeCCCCC-hHH-HHHHHhhh
Q 003796 78 PPRVIVLFGLSASVNLNSVREDLLRQLSSEGT------GAL----SSTVSSSKYRLRTSVLQAPHGD-LVG-CMEMAKVA 145 (795)
Q Consensus 78 pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~------~~g----~~tv~~~r~k~Ritfie~~~~d-l~~-~LD~aKvA 145 (795)
.++-|+|+|.++.+.. +| +..|+.... +.+ ..++..+....+++|+.+|-.. ... .....+-|
T Consensus 19 ~~~~i~v~G~~~~GKS-sl----i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 93 (213)
T 3cph_A 19 SIMKILLIGDSGVGKS-CL----LVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGA 93 (213)
T ss_dssp -CEEEEEECSTTSSHH-HH----HHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTC
T ss_pred cceEEEEECCCCCCHH-HH----HHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccC
Confidence 3566999999998875 67 444432221 111 2233344444678899887311 111 34556789
Q ss_pred ceEEEeeeCCCccccccccccChHHHHHHHHHHhc---CCCceEEEeccCCc
Q 003796 146 DLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSL---GLPSTAVLIRDLPT 194 (795)
Q Consensus 146 DlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aq---G~P~vigVl~~Ld~ 194 (795)
|.+|+|+|++.. ..|+. ..++|..+..+ +. .++.|++..|.
T Consensus 94 d~ii~v~d~~~~------~s~~~-~~~~~~~i~~~~~~~~-piilv~nK~Dl 137 (213)
T 3cph_A 94 MGIILVYDVTDE------RTFTN-IKQWFKTVNEHANDEA-QLLLVGNKSDM 137 (213)
T ss_dssp SEEEEEEETTCH------HHHHT-HHHHHHHHHHHTTTCS-EEEEEEECTTC
T ss_pred CEEEEEEECCCH------HHHHH-HHHHHHHHHHhcCCCC-CEEEEEECCCC
Confidence 999999999853 22322 22444444444 33 35667888775
No 143
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=88.11 E-value=1.4 Score=42.63 Aligned_cols=104 Identities=13% Similarity=0.068 Sum_probs=56.4
Q ss_pred CCEEEEEecCCCccChhhHHHHHHHhhccCCC------CCc---ceEEEecCceeeEEEEeCCCCC-hHH-HHHHHhhhc
Q 003796 78 PPRVIVLFGLSASVNLNSVREDLLRQLSSEGT------GAL---SSTVSSSKYRLRTSVLQAPHGD-LVG-CMEMAKVAD 146 (795)
Q Consensus 78 pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~------~~g---~~tv~~~r~k~Ritfie~~~~d-l~~-~LD~aKvAD 146 (795)
.++-|+|+|.++.+.. +| +..|..... +.+ ...+.......+++|+..+-.+ ... .....+-||
T Consensus 23 ~~~ki~vvG~~~~GKS-sl----i~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 97 (201)
T 3oes_A 23 RYRKVVILGYRCVGKT-SL----AHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVH 97 (201)
T ss_dssp CEEEEEEEESTTSSHH-HH----HHHHHHSCCCSCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCC
T ss_pred CcEEEEEECCCCcCHH-HH----HHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCC
Confidence 3556999999998875 77 444433221 112 1112222234667888876322 111 234567799
Q ss_pred eEEEeeeCCCccccccccccChHHHHHHHHHHh----cCCCceEEEeccCCc
Q 003796 147 LVAFVASASSFSEESMSYYIDSFGNQCLSVFRS----LGLPSTAVLIRDLPT 194 (795)
Q Consensus 147 lVll~idas~g~~~~~~~~fe~eg~e~L~~l~a----qG~P~vigVl~~Ld~ 194 (795)
.+|+++|++.. ..|+.-. ..+..+.. .+.| ++.|++..|.
T Consensus 98 ~~i~v~d~~~~------~s~~~~~-~~~~~i~~~~~~~~~p-iilv~nK~Dl 141 (201)
T 3oes_A 98 GYVLVYSVTSL------HSFQVIE-SLYQKLHEGHGKTRVP-VVLVGNKADL 141 (201)
T ss_dssp EEEEEEETTCH------HHHHHHH-HHHHHHHC-----CCC-EEEEEECTTC
T ss_pred EEEEEEeCCCH------HHHHHHH-HHHHHHHHhcCCCCCC-EEEEEECccC
Confidence 99999999853 2233222 33333332 3555 6677888885
No 144
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=88.05 E-value=1.7 Score=40.74 Aligned_cols=105 Identities=8% Similarity=0.052 Sum_probs=58.2
Q ss_pred CCCEEEEEecCCCccChhhHHHHHHHhhccCCC-------CCc----ceEEEecCceeeEEEEeCCCC-ChHH-HHHHHh
Q 003796 77 SPPRVIVLFGLSASVNLNSVREDLLRQLSSEGT-------GAL----SSTVSSSKYRLRTSVLQAPHG-DLVG-CMEMAK 143 (795)
Q Consensus 77 ~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~-------~~g----~~tv~~~r~k~Ritfie~~~~-dl~~-~LD~aK 143 (795)
.+++-|+|+|.++.+.. +| +..|..... +.+ ...+.......+++++.+|-. .... .....+
T Consensus 8 ~~~~~i~v~G~~~~GKs-sl----i~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~ 82 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKT-CL----LVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYR 82 (180)
T ss_dssp SEEEEEEEECSTTSSHH-HH----HHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGG
T ss_pred CcceEEEEECcCCCCHH-HH----HHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHcc
Confidence 34566999999998876 67 444432221 112 112233444568888888732 2222 334567
Q ss_pred hhceEEEeeeCCCccccccccccChHHHHHHHHHHh---cCCCceEEEeccCCc
Q 003796 144 VADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRS---LGLPSTAVLIRDLPT 194 (795)
Q Consensus 144 vADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~a---qG~P~vigVl~~Ld~ 194 (795)
-||.+|+|+|++.. ..|+. ..++|..+.. .+.| ++.|++..|.
T Consensus 83 ~~d~ii~v~d~~~~------~s~~~-~~~~~~~i~~~~~~~~p-iilv~nK~Dl 128 (180)
T 2g6b_A 83 DAHALLLLYDVTNK------ASFDN-IQAWLTEIHEYAQHDVA-LMLLGNKVDS 128 (180)
T ss_dssp GCSEEEEEEETTCH------HHHHT-HHHHHHHHHHHSCTTCE-EEEEEECCST
T ss_pred CCCEEEEEEECCCH------HHHHH-HHHHHHHHHHhCCCCCc-EEEEEECccc
Confidence 79999999999853 22322 1234444443 3444 5667888875
No 145
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=87.52 E-value=3.5 Score=42.39 Aligned_cols=98 Identities=8% Similarity=0.052 Sum_probs=56.4
Q ss_pred CEEEEEecCCCccChhhHHHHHHHhhccCCCCC----------cceEEEecCceeeEEEEeCCC-CChHH------HH--
Q 003796 79 PRVIVLFGLSASVNLNSVREDLLRQLSSEGTGA----------LSSTVSSSKYRLRTSVLQAPH-GDLVG------CM-- 139 (795)
Q Consensus 79 P~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~~----------g~~tv~~~r~k~Ritfie~~~-~dl~~------~L-- 139 (795)
.+-|+++|+++++++ +| ++.|++..... ...++... ..++.++..|- .++.+ +.
T Consensus 3 ~~~i~lvG~~g~GKT-TL----~n~l~g~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~ 75 (271)
T 3k53_A 3 LKTVALVGNPNVGKT-TI----FNALTGLRQHVGNWPGVTVEKKEGIMEYR--EKEFLVVDLPGIYSLTAHSIDELIARN 75 (271)
T ss_dssp CEEEEEEECSSSSHH-HH----HHHHHTTCEEEEECTTSSCEEEEEEEEET--TEEEEEEECCCCSCCCSSCHHHHHHHH
T ss_pred eeEEEEECCCCCCHH-HH----HHHHhCCCcccCCCCCeEEEeeEEEEEEC--CceEEEEeCCCccccccCCHHHHHHHH
Confidence 466999999998886 77 44444332110 11122222 35688998873 12222 11
Q ss_pred -HHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcC-CCceEEEeccCCc
Q 003796 140 -EMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLG-LPSTAVLIRDLPT 194 (795)
Q Consensus 140 -D~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG-~P~vigVl~~Ld~ 194 (795)
-...-||.||+++|++.+ + ....++..+...| .| ++.|++..|.
T Consensus 76 ~~~~~~~d~vi~v~D~~~~---------~-~~~~~~~~~~~~~~~p-~ilv~NK~Dl 121 (271)
T 3k53_A 76 FILDGNADVIVDIVDSTCL---------M-RNLFLTLELFEMEVKN-IILVLNKFDL 121 (271)
T ss_dssp HHHTTCCSEEEEEEEGGGH---------H-HHHHHHHHHHHTTCCS-EEEEEECHHH
T ss_pred hhhccCCcEEEEEecCCcc---------h-hhHHHHHHHHhcCCCC-EEEEEEChhc
Confidence 111349999999999852 2 2334444455566 65 6677888774
No 146
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=87.43 E-value=3.4 Score=42.45 Aligned_cols=106 Identities=14% Similarity=0.202 Sum_probs=62.4
Q ss_pred CCCEEEEEecCCCccChhhHHHHHHHhhccCCC---CC------cceEEEecCceeeEEEEeCCCC-Ch----HHHHHHH
Q 003796 77 SPPRVIVLFGLSASVNLNSVREDLLRQLSSEGT---GA------LSSTVSSSKYRLRTSVLQAPHG-DL----VGCMEMA 142 (795)
Q Consensus 77 ~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~---~~------g~~tv~~~r~k~Ritfie~~~~-dl----~~~LD~a 142 (795)
..+.-|+|+|.++.++. +| +..|..... .. .+.++.......+++++..|-- +. ..++...
T Consensus 37 ~~~~~I~vvG~~g~GKS-SL----in~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i 111 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKS-ST----VNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNII 111 (270)
T ss_dssp CCEEEEEEEESTTSSHH-HH----HHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHH
T ss_pred CCCeEEEEECCCCCCHH-HH----HHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHH
Confidence 34677999999998876 77 444433221 11 2223322222457999988731 11 1222222
Q ss_pred h------hhceEEEeeeCCCccccccccccChHHHHHHHHHHhc-CC---CceEEEeccCCc
Q 003796 143 K------VADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSL-GL---PSTAVLIRDLPT 194 (795)
Q Consensus 143 K------vADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aq-G~---P~vigVl~~Ld~ 194 (795)
+ -||.+|+++|.+. ..|+....+++..|... |- ..++.|+++.|.
T Consensus 112 ~~~~~~~~~d~il~v~~~d~-------~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl 166 (270)
T 1h65_A 112 KSFLLDKTIDVLLYVDRLDA-------YRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQF 166 (270)
T ss_dssp HHHTTTCEECEEEEEEESSC-------CCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSC
T ss_pred HHHhhcCCCCEEEEEEeCCC-------CcCCHHHHHHHHHHHHHhCcccccCEEEEEECccc
Confidence 2 4899999977653 12665666777777544 53 367888998885
No 147
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=87.04 E-value=2.4 Score=41.82 Aligned_cols=103 Identities=15% Similarity=0.071 Sum_probs=58.0
Q ss_pred CEEEEEecCCCccChhhHHHHHHHhhccCCCC------Cc----ceEEEecCceeeEEEEeCCCC-ChHH-HHHHHhhhc
Q 003796 79 PRVIVLFGLSASVNLNSVREDLLRQLSSEGTG------AL----SSTVSSSKYRLRTSVLQAPHG-DLVG-CMEMAKVAD 146 (795)
Q Consensus 79 P~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~------~g----~~tv~~~r~k~Ritfie~~~~-dl~~-~LD~aKvAD 146 (795)
.+-|+|+|.++.+.. +| +..|...... .| ..++..+....+++|+..+-. .... .....+-||
T Consensus 13 ~~ki~v~G~~~vGKS-sl----i~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 87 (223)
T 3cpj_B 13 LFKIVLIGDSGVGKS-NL----LSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAV 87 (223)
T ss_dssp EEEEEEESCTTSSHH-HH----HHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCC
T ss_pred eeEEEEECcCCCCHH-HH----HHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCC
Confidence 455899999998876 67 4444332211 11 233444444468888887621 1222 233457799
Q ss_pred eEEEeeeCCCccccccccccChHHHHHHHHHHhc---CCCceEEEeccCCc
Q 003796 147 LVAFVASASSFSEESMSYYIDSFGNQCLSVFRSL---GLPSTAVLIRDLPT 194 (795)
Q Consensus 147 lVll~idas~g~~~~~~~~fe~eg~e~L~~l~aq---G~P~vigVl~~Ld~ 194 (795)
.+|||+|++.. ..|+. ..++|..+..+ +.| ++.|++..|.
T Consensus 88 ~vilV~D~~~~------~s~~~-~~~~l~~i~~~~~~~~p-iilv~nK~Dl 130 (223)
T 3cpj_B 88 GALIVYDISKS------SSYEN-CNHWLSELRENADDNVA-VGLIGNKSDL 130 (223)
T ss_dssp EEEEEEC-CCH------HHHHH-HHHHHHHHHHHCC--CE-EEEEECCGGG
T ss_pred EEEEEEeCCCH------HHHHH-HHHHHHHHHHhCCCCCe-EEEEEECccc
Confidence 99999999853 22332 23445555554 443 5567788775
No 148
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=86.92 E-value=1.1 Score=42.05 Aligned_cols=105 Identities=13% Similarity=0.071 Sum_probs=55.9
Q ss_pred CCEEEEEecCCCccChhhHHHHHHHhhccCCCCC--cce-------EEEecCceeeEEEEeCCC-CChHHH-HHHHhhhc
Q 003796 78 PPRVIVLFGLSASVNLNSVREDLLRQLSSEGTGA--LSS-------TVSSSKYRLRTSVLQAPH-GDLVGC-MEMAKVAD 146 (795)
Q Consensus 78 pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~~--g~~-------tv~~~r~k~Ritfie~~~-~dl~~~-LD~aKvAD 146 (795)
.+.-|+|+|.++.+.. +| +..|+...... .|. ++......-+++++.+|- .....+ ....+-||
T Consensus 7 ~~~ki~v~G~~~~GKs-sl----~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 81 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKT-CL----LISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGAD 81 (182)
T ss_dssp CCCEEEEECSTTSSHH-HH----HHHHHHSCCC----------CBCCCC-------CEEECCCC-CTTTTTGGGGGTTCS
T ss_pred ceEEEEEECCCCCCHH-HH----HHHHhcCCCCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCC
Confidence 4566999999998876 67 44443222111 110 111222234566887752 122222 23456799
Q ss_pred eEEEeeeCCCccccccccccChHHHHHHHHHHhc--CCCceEEEeccCCc
Q 003796 147 LVAFVASASSFSEESMSYYIDSFGNQCLSVFRSL--GLPSTAVLIRDLPT 194 (795)
Q Consensus 147 lVll~idas~g~~~~~~~~fe~eg~e~L~~l~aq--G~P~vigVl~~Ld~ 194 (795)
.+|+++|++.. ..|+.....++..+..+ +.| ++.|++..|.
T Consensus 82 ~~i~v~d~~~~------~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl 124 (182)
T 3bwd_D 82 VFILAFSLISK------ASYENVSKKWIPELKHYAPGVP-IVLVGTKLDL 124 (182)
T ss_dssp EEEEEEETTCH------HHHHHHHHTHHHHHHHHCTTCC-EEEEEECHHH
T ss_pred EEEEEEECCCH------HHHHHHHHHHHHHHHHhCCCCC-EEEEEechhh
Confidence 99999999853 23443333466666654 555 5666777774
No 149
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=86.92 E-value=1.6 Score=41.31 Aligned_cols=104 Identities=9% Similarity=-0.020 Sum_probs=58.9
Q ss_pred CCEEEEEecCCCccChhhHHHHHHHhhccCCC------CCc----ceEEEecCceeeEEEEeCCCC-ChHH-HHHHHhhh
Q 003796 78 PPRVIVLFGLSASVNLNSVREDLLRQLSSEGT------GAL----SSTVSSSKYRLRTSVLQAPHG-DLVG-CMEMAKVA 145 (795)
Q Consensus 78 pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~------~~g----~~tv~~~r~k~Ritfie~~~~-dl~~-~LD~aKvA 145 (795)
.++-|+|+|+++.+.. +| ++.|..... +.+ ..++..+....+++|+.+|-. +..+ .....+-|
T Consensus 9 ~~~ki~v~G~~~~GKS-sl----i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 83 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKS-CL----LHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGA 83 (186)
T ss_dssp EEEEEEEEESTTSSHH-HH----HHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTC
T ss_pred cceEEEEECCCCCCHH-HH----HHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcC
Confidence 3456899999998886 77 444432211 111 222333444468889988732 2233 33446779
Q ss_pred ceEEEeeeCCCccccccccccChHHHHHHHHHHh---cCCCceEEEeccCCc
Q 003796 146 DLVAFVASASSFSEESMSYYIDSFGNQCLSVFRS---LGLPSTAVLIRDLPT 194 (795)
Q Consensus 146 DlVll~idas~g~~~~~~~~fe~eg~e~L~~l~a---qG~P~vigVl~~Ld~ 194 (795)
|.+|+++|++.. ..|+.. ..++..+.. .+.| ++.|++..|.
T Consensus 84 d~~i~v~d~~~~------~s~~~~-~~~~~~~~~~~~~~~p-iilv~nK~Dl 127 (186)
T 2bme_A 84 AGALLVYDITSR------ETYNAL-TNWLTDARMLASQNIV-IILCGNKKDL 127 (186)
T ss_dssp SEEEEEEETTCH------HHHHTH-HHHHHHHHHHSCTTCE-EEEEEECGGG
T ss_pred CEEEEEEECcCH------HHHHHH-HHHHHHHHHhcCCCCc-EEEEEECccc
Confidence 999999999853 223221 233333332 3444 5667787775
No 150
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=86.51 E-value=2.8 Score=39.25 Aligned_cols=107 Identities=17% Similarity=0.080 Sum_probs=58.1
Q ss_pred CCCEEEEEecCCCccChhhHHHHHHHh-hccCCCCCcc---eEEEecCceeeEEEEeCCCCChHHHHHHHhhhceEEEee
Q 003796 77 SPPRVIVLFGLSASVNLNSVREDLLRQ-LSSEGTGALS---STVSSSKYRLRTSVLQAPHGDLVGCMEMAKVADLVAFVA 152 (795)
Q Consensus 77 ~pP~iV~Vvg~~~~~~~~sl~~~lvk~-~~~~~~~~g~---~tv~~~r~k~Ritfie~~~~dl~~~LD~aKvADlVll~i 152 (795)
.+++=|+|+|.++.+.. +|++.++.. +..+..+.|. .++..+....++.++..+ ..-. -...+-||.+|||+
T Consensus 5 ~~~~ki~~vG~~~vGKT-sli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~-G~~~--~~~~~~~d~~ilv~ 80 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKS-SLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEA-GAPD--AKFSGWADAVIFVF 80 (178)
T ss_dssp CCEEEEEEECCGGGCHH-HHHHHHHHSCCCCCSSCSSSEEEEEEEETTEEEEEEEEECS-SSCC--HHHHHHCSEEEEEE
T ss_pred CCceEEEEECCCCCCHH-HHHHHHHhCCCCCcCCCcceeEEEEEEECCEEEEEEEEECC-CCch--hHHHHhCCEEEEEE
Confidence 34566999999998876 773333321 1111111121 223334445678888886 3322 24567799999999
Q ss_pred eCCCccccccccccChHHH--HHHHHHHhc---CCCceEEEeccCCc
Q 003796 153 SASSFSEESMSYYIDSFGN--QCLSVFRSL---GLPSTAVLIRDLPT 194 (795)
Q Consensus 153 das~g~~~~~~~~fe~eg~--e~L~~l~aq---G~P~vigVl~~Ld~ 194 (795)
|++.. ..|+.-.. +.|..+..+ +.| ++.|.+..|.
T Consensus 81 D~~~~------~s~~~~~~~~~~i~~~~~~~~~~~p-iilv~nK~Dl 120 (178)
T 2iwr_A 81 SLEDE------NSFQAVSRLHGQLSSLRGEGRGGLA-LALVGTQDRI 120 (178)
T ss_dssp ETTCH------HHHHHHHHHHHHHHHHHCSSSCCCE-EEEEEECTTC
T ss_pred ECcCH------HHHHHHHHHHHHHHHHHhcCCCCCC-EEEEEECccc
Confidence 99843 22332211 123333333 444 5566777664
No 151
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=86.49 E-value=2.2 Score=41.80 Aligned_cols=107 Identities=10% Similarity=0.078 Sum_probs=58.5
Q ss_pred CEEEEEecCCCccChhhHHHHHHHhhcc--CCCCCc----ceEEEecCceeeEEEEeCCCCC-hHH-HHHHHhhhceEEE
Q 003796 79 PRVIVLFGLSASVNLNSVREDLLRQLSS--EGTGAL----SSTVSSSKYRLRTSVLQAPHGD-LVG-CMEMAKVADLVAF 150 (795)
Q Consensus 79 P~iV~Vvg~~~~~~~~sl~~~lvk~~~~--~~~~~g----~~tv~~~r~k~Ritfie~~~~d-l~~-~LD~aKvADlVll 150 (795)
++-|+|+|.++.+.. +|++.|+..... ...+.| ..++.......+++|+.++-.. +.. ....++-||.+|+
T Consensus 26 ~~ki~lvG~~~vGKS-sLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 104 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKT-CLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALIL 104 (201)
T ss_dssp EEEEEEEESTTSSHH-HHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEE
T ss_pred ceEEEEECcCCCCHH-HHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence 456899999998876 773333322110 111112 1233344444578888886322 333 3345678999999
Q ss_pred eeeCCCccccccccccChHHHHHHHHHHhc---CCCceEEEeccCCc
Q 003796 151 VASASSFSEESMSYYIDSFGNQCLSVFRSL---GLPSTAVLIRDLPT 194 (795)
Q Consensus 151 ~idas~g~~~~~~~~fe~eg~e~L~~l~aq---G~P~vigVl~~Ld~ 194 (795)
++|++.. ..|+.- .+.+..++.. +.| ++.|++..|.
T Consensus 105 v~D~~~~------~s~~~~-~~~~~~i~~~~~~~~p-iilv~NK~Dl 143 (201)
T 2ew1_A 105 TYDITCE------ESFRCL-PEWLREIEQYASNKVI-TVLVGNKIDL 143 (201)
T ss_dssp EEETTCH------HHHHTH-HHHHHHHHHHSCTTCE-EEEEEECGGG
T ss_pred EEECCCH------HHHHHH-HHHHHHHHHhcCCCCC-EEEEEECCCC
Confidence 9999853 223221 2334444433 333 5566787775
No 152
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=86.41 E-value=1.6 Score=47.98 Aligned_cols=69 Identities=13% Similarity=0.273 Sum_probs=46.8
Q ss_pred EEEEecCCCccChhhHHHHHHHhhccCCCCC--------cce--EEEecCceeeEEEEeCCC---------CChHHHHHH
Q 003796 81 VIVLFGLSASVNLNSVREDLLRQLSSEGTGA--------LSS--TVSSSKYRLRTSVLQAPH---------GDLVGCMEM 141 (795)
Q Consensus 81 iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~~--------g~~--tv~~~r~k~Ritfie~~~---------~dl~~~LD~ 141 (795)
-|++||+|+.+.+ +| ++.+|+..... .|+ .+..+ -.+++|+..|- .-.+..|..
T Consensus 74 ~V~ivG~PNvGKS-TL----~n~Lt~~~~~v~~~pftT~~~~~g~~~~~--~~~i~l~D~pGl~~~a~~~~~~g~~~l~~ 146 (376)
T 4a9a_A 74 SVGFVGFPSVGKS-TL----LSKLTGTESEAAEYEFTTLVTVPGVIRYK--GAKIQMLDLPGIIDGAKDGRGRGKQVIAV 146 (376)
T ss_dssp EEEEECCCCHHHH-HH----HHHHHSBCCCGGGTCSSCCCEEEEEEEET--TEEEEEEECGGGCCC-----CHHHHHHHH
T ss_pred eEEEECCCCCCHH-HH----HHHHhCCCCcccCCCCceeeeeeEEEEeC--CcEEEEEeCCCccCCchhhhHHHHHHHHH
Confidence 3899999998775 67 56666544221 121 12223 36888888762 112678999
Q ss_pred HhhhceEEEeeeCCC
Q 003796 142 AKVADLVAFVASASS 156 (795)
Q Consensus 142 aKvADlVll~idas~ 156 (795)
++-||+||+|+|++.
T Consensus 147 i~~ad~il~vvD~~~ 161 (376)
T 4a9a_A 147 ARTCNLLFIILDVNK 161 (376)
T ss_dssp HHHCSEEEEEEETTS
T ss_pred HHhcCccccccccCc
Confidence 999999999999984
No 153
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=86.22 E-value=5.2 Score=37.73 Aligned_cols=101 Identities=14% Similarity=0.159 Sum_probs=58.7
Q ss_pred CCEEEEEecCCCccChhhHHHHHHHhhccCCC---CC--c----c--eEEEecCceeeEEEEeCCC-CC---------hH
Q 003796 78 PPRVIVLFGLSASVNLNSVREDLLRQLSSEGT---GA--L----S--STVSSSKYRLRTSVLQAPH-GD---------LV 136 (795)
Q Consensus 78 pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~---~~--g----~--~tv~~~r~k~Ritfie~~~-~d---------l~ 136 (795)
+..-|+|+|.++.+.. +| ++.|+.... .. | . -++.... ..+.++..+- .+ +.
T Consensus 3 ~~~ki~ivG~~g~GKS-tL----l~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~ 75 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKS-SL----LNALAGREAAIVTDIAGTTRDVLREHIHIDG--MPLHIIDTAGLREASDEVERIGIE 75 (172)
T ss_dssp -CEEEEEEESTTSSHH-HH----HHHHHTSCCSCCCSSTTCCCSCEEEEEEETT--EEEEEEECCCCSCCSSHHHHHHHH
T ss_pred CCCEEEEECCCCCCHH-HH----HHHHhCCCcceeeCCCCceeceeeEEEEECC--eEEEEEECCCcccchhHHHHHHHH
Confidence 4567999999998886 77 555544321 11 1 1 1222332 4577787652 11 22
Q ss_pred HHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhc---CCCceEEEeccCCc
Q 003796 137 GCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSL---GLPSTAVLIRDLPT 194 (795)
Q Consensus 137 ~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aq---G~P~vigVl~~Ld~ 194 (795)
.++...+-||.+|+++|++.. ..|+ ..+++..+..+ +.| ++.|++..|.
T Consensus 76 ~~~~~~~~ad~~i~v~D~~~~------~s~~--~~~~~~~~~~~~~~~~p-~ilv~NK~Dl 127 (172)
T 2gj8_A 76 RAWQEIEQADRVLFMVDGTTT------DAVD--PAEIWPEFIARLPAKLP-ITVVRNKADI 127 (172)
T ss_dssp HHHHHHHTCSEEEEEEETTTC------CCCS--HHHHCHHHHHHSCTTCC-EEEEEECHHH
T ss_pred HHHHHHHhCCEEEEEEECCCC------CCHH--HHHHHHHHHHhcccCCC-EEEEEECccC
Confidence 234567889999999999854 2244 23455555544 455 5667777664
No 154
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=85.99 E-value=1.7 Score=40.96 Aligned_cols=105 Identities=11% Similarity=0.021 Sum_probs=50.2
Q ss_pred CCEEEEEecCCCccChhhHHHHHHHhhccCCCC-C-----c----ceEEEecCceeeEEEEeCCCC-ChHHH-HHHHhhh
Q 003796 78 PPRVIVLFGLSASVNLNSVREDLLRQLSSEGTG-A-----L----SSTVSSSKYRLRTSVLQAPHG-DLVGC-MEMAKVA 145 (795)
Q Consensus 78 pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~-~-----g----~~tv~~~r~k~Ritfie~~~~-dl~~~-LD~aKvA 145 (795)
.++-|+|+|.++.+.. +| +..|+..... . | ..++..+....+++|+.+|-. ....+ ....+-|
T Consensus 7 ~~~ki~v~G~~~~GKs-sl----~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 81 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKT-CV----LFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGA 81 (183)
T ss_dssp EEEEEEEECCCCC---------------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTC
T ss_pred CceEEEEECCCCCCHH-HH----HHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcC
Confidence 3566999999998875 66 4444332211 1 2 223334444578889988731 22222 2345679
Q ss_pred ceEEEeeeCCCccccccccccChHHHHHHHHHHhcCC--CceEEEeccCCc
Q 003796 146 DLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGL--PSTAVLIRDLPT 194 (795)
Q Consensus 146 DlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~--P~vigVl~~Ld~ 194 (795)
|.+|+|+|++.. ..|+. ..++|..+..+.. ..++.|++..|.
T Consensus 82 d~~i~v~d~~~~------~s~~~-~~~~~~~i~~~~~~~~piilv~nK~Dl 125 (183)
T 2fu5_C 82 MGIMLVYDITNE------KSFDN-IRNWIRNIEEHASADVEKMILGNKCDV 125 (183)
T ss_dssp SEEEEEEETTCH------HHHHH-HHHHHHHHHHHSCTTCEEEEEEEC--C
T ss_pred CEEEEEEECcCH------HHHHH-HHHHHHHHHHhcCCCCCEEEEEECccC
Confidence 999999999853 22332 2345666665522 235666787775
No 155
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=85.74 E-value=3.2 Score=39.09 Aligned_cols=104 Identities=10% Similarity=-0.080 Sum_probs=60.2
Q ss_pred CCEEEEEecCCCccChhhHHHHHHHhhccCCC------CCcc-----eEEEecCc---------eeeEEEEeCCCC-ChH
Q 003796 78 PPRVIVLFGLSASVNLNSVREDLLRQLSSEGT------GALS-----STVSSSKY---------RLRTSVLQAPHG-DLV 136 (795)
Q Consensus 78 pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~------~~g~-----~tv~~~r~---------k~Ritfie~~~~-dl~ 136 (795)
.++-|+|+|.++.+.. +| +..|..... +.|. .++..... ..+++++..|-. .+.
T Consensus 10 ~~~ki~v~G~~~~GKS-sl----i~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 84 (195)
T 3bc1_A 10 YLIKFLALGDSGVGKT-SV----LYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFR 84 (195)
T ss_dssp EEEEEEEECSTTSSHH-HH----HHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGH
T ss_pred eeEEEEEECCCCCCHH-HH----HHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHH
Confidence 3566999999998876 67 444432211 1122 12222222 458888888632 233
Q ss_pred H-HHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhc----CCCceEEEeccCCc
Q 003796 137 G-CMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSL----GLPSTAVLIRDLPT 194 (795)
Q Consensus 137 ~-~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aq----G~P~vigVl~~Ld~ 194 (795)
. .....+-||.+|||+|++.. ..|+. ..++|..+..+ +.| ++.|++..|.
T Consensus 85 ~~~~~~~~~~d~~i~v~d~~~~------~s~~~-~~~~~~~i~~~~~~~~~p-iilv~nK~Dl 139 (195)
T 3bc1_A 85 SLTTAFFRDAMGFLLLFDLTNE------QSFLN-VRNWISQLQMHAYSENPD-IVLCGNKSDL 139 (195)
T ss_dssp HHHHHTTTTCSEEEEEEETTCH------HHHHT-HHHHHHHHHHHSSSSSCC-EEEEEECTTC
T ss_pred HHHHHHHcCCCEEEEEEECCCH------HHHHH-HHHHHHHHHHhcCCCCCC-EEEEEECccc
Confidence 3 34456789999999999853 22322 23455555543 444 6677888885
No 156
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=85.47 E-value=4.6 Score=39.47 Aligned_cols=105 Identities=11% Similarity=0.013 Sum_probs=60.4
Q ss_pred CCEEEEEecCCCccChhhHHHHHHHhhccCCC------CCcc---eEEEecCceeeEEEEeCCCC-ChHHHH-HHHhhhc
Q 003796 78 PPRVIVLFGLSASVNLNSVREDLLRQLSSEGT------GALS---STVSSSKYRLRTSVLQAPHG-DLVGCM-EMAKVAD 146 (795)
Q Consensus 78 pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~------~~g~---~tv~~~r~k~Ritfie~~~~-dl~~~L-D~aKvAD 146 (795)
..+-|+|+|.++.+.. +| +..|+.... +.+. .++.......++.|+.++-. ....+. ...+-||
T Consensus 27 ~~~ki~vvG~~~vGKS-sL----i~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 101 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKT-AL----LHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSD 101 (205)
T ss_dssp CEEEEEEEESTTSSHH-HH----HHHHHHSCCCSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCS
T ss_pred eeeEEEEECCCCCCHH-HH----HHHHhcCCCCCCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCC
Confidence 3566999999998876 77 444433221 1121 12333434567888888621 122222 2356799
Q ss_pred eEEEeeeCCCccccccccccChHHHHHHHHHHhc--CCCceEEEeccCCc
Q 003796 147 LVAFVASASSFSEESMSYYIDSFGNQCLSVFRSL--GLPSTAVLIRDLPT 194 (795)
Q Consensus 147 lVll~idas~g~~~~~~~~fe~eg~e~L~~l~aq--G~P~vigVl~~Ld~ 194 (795)
.+||++|++.. ..|+.....++..++.+ +.| ++.|++..|.
T Consensus 102 ~~ilv~D~~~~------~s~~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl 144 (205)
T 1gwn_A 102 AVLICFDISRP------ETLDSVLKKWKGEIQEFCPNTK-MLLVGCKSDL 144 (205)
T ss_dssp EEEEEEETTCH------HHHHHHHHTHHHHHHHHCTTCE-EEEEEECGGG
T ss_pred EEEEEEECCCH------HHHHHHHHHHHHHHHHHCCCCC-EEEEEechhh
Confidence 99999999853 23443323445555543 433 5667788775
No 157
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=85.15 E-value=2.3 Score=39.71 Aligned_cols=106 Identities=10% Similarity=0.102 Sum_probs=55.8
Q ss_pred CCCEEEEEecCCCccChhhHHHHHHHhhccCCC------CCc----ceEEEec-CceeeEEEEeCCCC-ChHH-HHHHHh
Q 003796 77 SPPRVIVLFGLSASVNLNSVREDLLRQLSSEGT------GAL----SSTVSSS-KYRLRTSVLQAPHG-DLVG-CMEMAK 143 (795)
Q Consensus 77 ~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~------~~g----~~tv~~~-r~k~Ritfie~~~~-dl~~-~LD~aK 143 (795)
..++-|+|+|+++.+.. +| +..|..... +.| ..++... ....+++++.+|-. .... .....+
T Consensus 6 ~~~~~i~v~G~~~~GKS-sl----i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 80 (182)
T 1ky3_A 6 KNILKVIILGDSGVGKT-SL----MHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYR 80 (182)
T ss_dssp -CEEEEEEECCTTSSHH-HH----HHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCST
T ss_pred CceEEEEEECCCCCCHH-HH----HHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhh
Confidence 34567999999998876 67 444432221 111 2223322 23457888888731 1222 233457
Q ss_pred hhceEEEeeeCCCccccccccccCh---HHHHHHHHHHh---cCCCceEEEeccCCc
Q 003796 144 VADLVAFVASASSFSEESMSYYIDS---FGNQCLSVFRS---LGLPSTAVLIRDLPT 194 (795)
Q Consensus 144 vADlVll~idas~g~~~~~~~~fe~---eg~e~L~~l~a---qG~P~vigVl~~Ld~ 194 (795)
-||.+|+++|++.. ..|+. +-.+++..+.. .+.| ++.|++..|.
T Consensus 81 ~~d~~i~v~d~~~~------~s~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl 130 (182)
T 1ky3_A 81 GADCCVLVYDVTNA------SSFENIKSWRDEFLVHANVNSPETFP-FVILGNKIDA 130 (182)
T ss_dssp TCCEEEEEEETTCH------HHHHTHHHHHHHHHHHHCCSCTTTCC-EEEEEECTTS
T ss_pred cCCEEEEEEECCCh------HHHHHHHHHHHHHHHHhcccCcCCCc-EEEEEECCcc
Confidence 79999999999853 22322 22233333221 3444 5667888775
No 158
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=84.99 E-value=4.2 Score=41.61 Aligned_cols=105 Identities=16% Similarity=0.252 Sum_probs=61.7
Q ss_pred CCCEEEEEecCCCccChhhHHHHHHHhhccCCC---CC------cceEEEecCceeeEEEEeCCCCC--h----HHHHHH
Q 003796 77 SPPRVIVLFGLSASVNLNSVREDLLRQLSSEGT---GA------LSSTVSSSKYRLRTSVLQAPHGD--L----VGCMEM 141 (795)
Q Consensus 77 ~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~---~~------g~~tv~~~r~k~Ritfie~~~~d--l----~~~LD~ 141 (795)
..++-|+|+|.++.+.. +| +..|+.... .. ...+....--..+++++..| .- . ...+..
T Consensus 34 ~~~~~I~lvG~~g~GKS-SL----in~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTp-G~~~~~~~~~~~~~~ 107 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKS-ST----VNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTP-GLVEAGYVNHQALEL 107 (262)
T ss_dssp CCEEEEEEEECTTSSHH-HH----HHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECC-CSEETTEECHHHHHH
T ss_pred CCCcEEEEECCCCCCHH-HH----HHHHhCCCCcccCCCCCcceeeEEEEEEECCeeEEEEECC-CCCCcccchHHHHHH
Confidence 45778999999998886 77 444433321 11 22222211123589999987 42 1 122222
Q ss_pred Hh------hhceEEEeeeCCCccccccccccChHHHHHHHHHHhc-C---CCceEEEeccCCc
Q 003796 142 AK------VADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSL-G---LPSTAVLIRDLPT 194 (795)
Q Consensus 142 aK------vADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aq-G---~P~vigVl~~Ld~ 194 (795)
.+ -+|.+|+++|... ..|+....+++..|+.. | ...++.|+++.|.
T Consensus 108 i~~~l~~~~~~~il~V~~~d~-------~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl 163 (262)
T 3def_A 108 IKGFLVNRTIDVLLYVDRLDV-------YAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQF 163 (262)
T ss_dssp HHHHTTTCEECEEEEEEESSC-------SCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTC
T ss_pred HHHHHhcCCCCEEEEEEcCCC-------CCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCccc
Confidence 22 5799999987653 23666666677666654 3 2356778888774
No 159
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=84.69 E-value=2.8 Score=45.11 Aligned_cols=65 Identities=8% Similarity=-0.010 Sum_probs=43.0
Q ss_pred eeEEEEeCCC-CC--------------hHHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEE
Q 003796 123 LRTSVLQAPH-GD--------------LVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAV 187 (795)
Q Consensus 123 ~Ritfie~~~-~d--------------l~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vig 187 (795)
..++++..|- .+ ..-+...++-||.|||+++++.. .....+..+++..+...|.| +|+
T Consensus 136 ~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~------~~~~~~~~~l~~~~~~~~~~-~i~ 208 (360)
T 3t34_A 136 VNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQ------DLATSDAIKISREVDPSGDR-TFG 208 (360)
T ss_dssp CSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTS------CGGGCHHHHHHHHSCTTCTT-EEE
T ss_pred CCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccC------CcCCHHHHHHHHHhcccCCC-EEE
Confidence 4678888762 12 22344556779999999986521 12334557777888778876 678
Q ss_pred EeccCCc
Q 003796 188 LIRDLPT 194 (795)
Q Consensus 188 Vl~~Ld~ 194 (795)
|+|..|.
T Consensus 209 V~nK~Dl 215 (360)
T 3t34_A 209 VLTKIDL 215 (360)
T ss_dssp EEECGGG
T ss_pred EEeCCcc
Confidence 8898885
No 160
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=84.49 E-value=5.3 Score=43.07 Aligned_cols=125 Identities=13% Similarity=0.114 Sum_probs=68.5
Q ss_pred EEEecCCCccChhhHHHHHHHhhccCCC-------CC-cce--EEEecCceeeEEEEeCCCCC----------hHHHHHH
Q 003796 82 IVLFGLSASVNLNSVREDLLRQLSSEGT-------GA-LSS--TVSSSKYRLRTSVLQAPHGD----------LVGCMEM 141 (795)
Q Consensus 82 V~Vvg~~~~~~~~sl~~~lvk~~~~~~~-------~~-g~~--tv~~~r~k~Ritfie~~~~d----------l~~~LD~ 141 (795)
|+|+|.++.+++ +| +..|+.... +. .|. .+..+. ..+++++..| .- ....|..
T Consensus 161 V~lvG~~nvGKS-TL----ln~L~~~~~~i~~~~ftTl~p~~g~v~~~~-~~~~~l~DtP-G~i~~a~~~~~l~~~fl~~ 233 (342)
T 1lnz_A 161 VGLVGFPSVGKS-TL----LSVVSSAKPKIADYHFTTLVPNLGMVETDD-GRSFVMADLP-GLIEGAHQGVGLGHQFLRH 233 (342)
T ss_dssp EEEESSTTSSHH-HH----HHHSEEECCEESSTTSSCCCCCEEEEECSS-SCEEEEEEHH-HHHHHTTCTTTTHHHHHHH
T ss_pred eeeeCCCCCCHH-HH----HHHHHcCCCccccCCccccCceEEEEEeCC-CceEEEecCC-CCcccccccchhHHHHHHH
Confidence 899999998876 77 666654321 11 221 222221 2578888776 31 1445666
Q ss_pred HhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhc-----CCCceEEEeccCCcchhhhHHHHHHHHhhcccccCC
Q 003796 142 AKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSL-----GLPSTAVLIRDLPTDLKKRKDLKKMCISSLTSEFPE 216 (795)
Q Consensus 142 aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aq-----G~P~vigVl~~Ld~~~Kk~~~~kK~lk~~f~~ef~~ 216 (795)
+.-||++|+|+|++.. +. ...++ .-..++..|... +.| ++.|++..|. -......+.++..+..
T Consensus 234 i~~~d~ll~VvD~s~~-~~--~~~~~-~~~~~~~eL~~~~~~l~~~p-~ilV~NK~Dl--~~~~e~~~~l~~~l~~---- 302 (342)
T 1lnz_A 234 IERTRVIVHVIDMSGL-EG--RDPYD-DYLTINQELSEYNLRLTERP-QIIVANKMDM--PEAAENLEAFKEKLTD---- 302 (342)
T ss_dssp HHHCCEEEEEEESSCS-SC--CCHHH-HHHHHHHHHHHSCSSTTTSC-BCBEEECTTS--TTHHHHHHHHHHHCCS----
T ss_pred HHhccEEEEEEECCcc-cc--cChHH-HHHHHHHHHHHhhhhhcCCC-EEEEEECccC--CCCHHHHHHHHHHhhc----
Confidence 6679999999999741 00 01122 223455666653 455 5667888886 1112222334444332
Q ss_pred CCeeEEeC
Q 003796 217 DCKFYAAD 224 (795)
Q Consensus 217 ~~Klf~l~ 224 (795)
...+|.+|
T Consensus 303 ~~~v~~iS 310 (342)
T 1lnz_A 303 DYPVFPIS 310 (342)
T ss_dssp CCCBCCCS
T ss_pred CCCEEEEE
Confidence 24566666
No 161
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=84.43 E-value=12 Score=35.08 Aligned_cols=78 Identities=14% Similarity=0.120 Sum_probs=44.2
Q ss_pred CCEEEEEecCCCccChhhHHHHHHHhhccCC-CC------CcceEE----------EecCceeeEEEEeCCC-CChHHHH
Q 003796 78 PPRVIVLFGLSASVNLNSVREDLLRQLSSEG-TG------ALSSTV----------SSSKYRLRTSVLQAPH-GDLVGCM 139 (795)
Q Consensus 78 pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~-~~------~g~~tv----------~~~r~k~Ritfie~~~-~dl~~~L 139 (795)
..+=|+|+|.++.+.. +|++.+...+.... .. .-.-|+ .......+++++..+- ..+..+.
T Consensus 13 ~~~ki~vvG~~~~GKs-sL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 91 (198)
T 3t1o_A 13 INFKIVYYGPGLSGKT-TNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNASR 91 (198)
T ss_dssp EEEEEEEECSTTSSHH-HHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSHHH
T ss_pred cccEEEEECCCCCCHH-HHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHHHH
Confidence 3455999999998876 67333232221110 00 000111 1222345788888862 2344444
Q ss_pred H-HHhhhceEEEeeeCCC
Q 003796 140 E-MAKVADLVAFVASASS 156 (795)
Q Consensus 140 D-~aKvADlVll~idas~ 156 (795)
. ..+-||.+|||+|++.
T Consensus 92 ~~~~~~~d~~i~v~D~~~ 109 (198)
T 3t1o_A 92 KLILRGVDGIVFVADSAP 109 (198)
T ss_dssp HHHTTTCCEEEEEEECCG
T ss_pred HHHHhcCCEEEEEEECCc
Confidence 3 5678999999999984
No 162
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=84.00 E-value=2.9 Score=41.09 Aligned_cols=110 Identities=8% Similarity=0.017 Sum_probs=60.8
Q ss_pred CCCCEEEEEecCCCccChhhHHHHHH-Hhhcc-CCCCC----cceEEEecCceeeEEEEeCCCCC-hHH-HHHHHhhhce
Q 003796 76 ASPPRVIVLFGLSASVNLNSVREDLL-RQLSS-EGTGA----LSSTVSSSKYRLRTSVLQAPHGD-LVG-CMEMAKVADL 147 (795)
Q Consensus 76 ~~pP~iV~Vvg~~~~~~~~sl~~~lv-k~~~~-~~~~~----g~~tv~~~r~k~Ritfie~~~~d-l~~-~LD~aKvADl 147 (795)
....+-|+|+|.++.+.. +|++.++ ..+.. +..+. ...++.......+++|+..+-.. ... .....+-||.
T Consensus 12 ~~~~~ki~v~G~~~~GKS-sli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 90 (221)
T 3gj0_A 12 PQVQFKLVLVGDGGTGKT-TFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQC 90 (221)
T ss_dssp CCCEEEEEEEECTTSSHH-HHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCE
T ss_pred cccceEEEEECCCCCCHH-HHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCE
Confidence 345566999999998875 6633211 11111 11111 23344444445678888876211 111 2345667999
Q ss_pred EEEeeeCCCccccccccccChHHHHHHHHHHhc--CCCceEEEeccCCc
Q 003796 148 VAFVASASSFSEESMSYYIDSFGNQCLSVFRSL--GLPSTAVLIRDLPT 194 (795)
Q Consensus 148 Vll~idas~g~~~~~~~~fe~eg~e~L~~l~aq--G~P~vigVl~~Ld~ 194 (795)
+|+|+|++.. ..|+.- ..++..+..+ +.| ++.|++..|.
T Consensus 91 ~i~v~d~~~~------~s~~~~-~~~~~~~~~~~~~~p-~ilv~nK~Dl 131 (221)
T 3gj0_A 91 AIIMFDVTSR------VTYKNV-PNWHRDLVRVCENIP-IVLCGNKVDI 131 (221)
T ss_dssp EEEEEETTCH------HHHHTH-HHHHHHHHHHSTTCC-EEEEEECTTS
T ss_pred EEEEEECCCH------HHHHHH-HHHHHHHHHhCCCCC-EEEEEECCcc
Confidence 9999999853 223322 2334444333 555 5667888775
No 163
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=83.56 E-value=3.4 Score=46.54 Aligned_cols=137 Identities=10% Similarity=0.044 Sum_probs=72.5
Q ss_pred CEEEEEecCCCccChhhHHHHHHHhhcc-CC-C--CC---cceEEEecCceeeEEEEeCCC-CCh---------HHHHHH
Q 003796 79 PRVIVLFGLSASVNLNSVREDLLRQLSS-EG-T--GA---LSSTVSSSKYRLRTSVLQAPH-GDL---------VGCMEM 141 (795)
Q Consensus 79 P~iV~Vvg~~~~~~~~sl~~~lvk~~~~-~~-~--~~---g~~tv~~~r~k~Ritfie~~~-~dl---------~~~LD~ 141 (795)
+.-|+|+|.++.++. +|++.|+..-.. .. . +. ...++.... ..++++..+- .+. ...+..
T Consensus 224 ~~kV~ivG~~nvGKS-SLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~v~liDT~G~~~~~~~ve~~gi~~~~~~ 300 (462)
T 3geh_A 224 GLKVAIVGRPNVGKS-SLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGG--IPVQVLDTAGIRETSDQVEKIGVERSRQA 300 (462)
T ss_dssp CEEEEEEECTTSSHH-HHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETT--EEEEECC--------------------CC
T ss_pred CCEEEEEcCCCCCHH-HHHHHHhCCCcccccCCCCeeEEEEEEEEEECC--EEEEEEECCccccchhHHHHHHHHHHhhh
Confidence 345999999998876 774444432110 11 0 01 112233332 4666766542 122 223445
Q ss_pred HhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchhhhHHHHHHHHhhcccccCCCCeeE
Q 003796 142 AKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKKRKDLKKMCISSLTSEFPEDCKFY 221 (795)
Q Consensus 142 aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~~~Kk~~~~kK~lk~~f~~ef~~~~Klf 221 (795)
++-||+||+|+|++.+ +..+..+++..+.. ..++.|++..|...... .. .+ ..+..+..++
T Consensus 301 ~~~aD~vl~VvD~s~~--------~~~~~~~i~~~l~~---~piivV~NK~Dl~~~~~--~~-----~~-~~~~~~~~~i 361 (462)
T 3geh_A 301 ANTADLVLLTIDAATG--------WTTGDQEIYEQVKH---RPLILVMNKIDLVEKQL--IT-----SL-EYPENITQIV 361 (462)
T ss_dssp CCSCSEEEEEEETTTC--------SCHHHHHHHHHHTT---SCEEEEEECTTSSCGGG--ST-----TC-CCCTTCCCEE
T ss_pred hhcCCEEEEEeccCCC--------CCHHHHHHHHhccC---CcEEEEEECCCCCcchh--hH-----HH-HHhccCCcEE
Confidence 6779999999999854 56666788887754 35778889888511111 10 11 1222356788
Q ss_pred EeCCH--HHHHHHHHHHh
Q 003796 222 AADTK--DELHKFLWLFK 237 (795)
Q Consensus 222 ~l~~~--~E~~nL~R~Is 237 (795)
.+|.. .-+..|...|.
T Consensus 362 ~iSAktg~Gi~eL~~~i~ 379 (462)
T 3geh_A 362 HTAAAQKQGIDSLETAIL 379 (462)
T ss_dssp EEBTTTTBSHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 88842 23444444443
No 164
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=83.39 E-value=18 Score=38.78 Aligned_cols=33 Identities=9% Similarity=0.130 Sum_probs=22.2
Q ss_pred eEEEEeCCCCChHHHHHHHhhhceEEEeeeCCCc
Q 003796 124 RTSVLQAPHGDLVGCMEMAKVADLVAFVASASSF 157 (795)
Q Consensus 124 Ritfie~~~~dl~~~LD~aKvADlVll~idas~g 157 (795)
.+.|++.+ .=..+-..+...||++|+|+|++.|
T Consensus 168 ~~iliDT~-Gi~~~~~~l~~~~d~vl~V~d~~~~ 200 (349)
T 2www_A 168 DIILIETV-GVGQSEFAVADMVDMFVLLLPPAGG 200 (349)
T ss_dssp SEEEEECC-CC--CHHHHHTTCSEEEEEECCC--
T ss_pred CEEEEECC-CcchhhhhHHhhCCEEEEEEcCCcc
Confidence 56777775 4222345668899999999999854
No 165
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=82.97 E-value=3.1 Score=40.44 Aligned_cols=110 Identities=13% Similarity=0.012 Sum_probs=61.6
Q ss_pred CCCEEEEEecCCCccChhhHHHHHHHhh-cc-CCCCCc---ceEEEecCceeeEEEEeCCC-CChHHHH-HHHhhhceEE
Q 003796 77 SPPRVIVLFGLSASVNLNSVREDLLRQL-SS-EGTGAL---SSTVSSSKYRLRTSVLQAPH-GDLVGCM-EMAKVADLVA 149 (795)
Q Consensus 77 ~pP~iV~Vvg~~~~~~~~sl~~~lvk~~-~~-~~~~~g---~~tv~~~r~k~Ritfie~~~-~dl~~~L-D~aKvADlVl 149 (795)
...+-|+|+|.++.+.. +|++.++..- .. +..+.+ ..++......-.+.++..+- .....+. ...+-||.+|
T Consensus 7 ~~~~ki~i~G~~~~GKT-sli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 85 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKT-CMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFV 85 (212)
T ss_dssp CCEEEEEEEESTTSSHH-HHHHHHHHSCCCSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEE
T ss_pred CceEEEEEECCCCCCHH-HHHHHHhcCCCCccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEE
Confidence 34566999999998876 6733333211 11 111112 12233343446788887752 1222232 2467799999
Q ss_pred EeeeCCCccccccccccChHHHHHHHHHHhc--CCCceEEEeccCCc
Q 003796 150 FVASASSFSEESMSYYIDSFGNQCLSVFRSL--GLPSTAVLIRDLPT 194 (795)
Q Consensus 150 l~idas~g~~~~~~~~fe~eg~e~L~~l~aq--G~P~vigVl~~Ld~ 194 (795)
||+|++.. ..|+..-..++..++.+ +.| ++.|++..|.
T Consensus 86 lv~d~~~~------~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl 125 (212)
T 2j0v_A 86 LAFSLISK------ASYENVLKKWMPELRRFAPNVP-IVLVGTKLDL 125 (212)
T ss_dssp EEEETTCH------HHHHHHHHTHHHHHHHHCTTCC-EEEEEECHHH
T ss_pred EEEECCCH------HHHHHHHHHHHHHHHHhCCCCC-EEEEEeCHHh
Confidence 99999853 23444334566677665 555 5566777664
No 166
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=82.81 E-value=4.9 Score=48.71 Aligned_cols=64 Identities=11% Similarity=0.087 Sum_probs=48.4
Q ss_pred eeeEEEEeCCC-CChH-HHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc
Q 003796 122 RLRTSVLQAPH-GDLV-GCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT 194 (795)
Q Consensus 122 k~Ritfie~~~-~dl~-~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~ 194 (795)
..++.++.+|- .|+. .+..+.+.||.+|+|+|++.| ....+..++..+...|+|.++ |++.+|.
T Consensus 97 ~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g--------~~~qt~~~~~~~~~~~~p~il-viNK~D~ 162 (842)
T 1n0u_A 97 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEG--------VCVQTETVLRQALGERIKPVV-VINKVDR 162 (842)
T ss_dssp EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTB--------SCHHHHHHHHHHHHTTCEEEE-EEECHHH
T ss_pred CceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCC--------CCHHHHHHHHHHHHcCCCeEE-EEECCCc
Confidence 46889998873 3443 456677999999999999965 666778888888888999654 6666553
No 167
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=82.71 E-value=1.9 Score=46.42 Aligned_cols=62 Identities=19% Similarity=0.200 Sum_probs=41.6
Q ss_pred eeEEEEeCCCC---------------ChHHHHH-HH-hhhceEEEeeeCCCccccccccccCh-HHHHHHHHHHhcCCCc
Q 003796 123 LRTSVLQAPHG---------------DLVGCME-MA-KVADLVAFVASASSFSEESMSYYIDS-FGNQCLSVFRSLGLPS 184 (795)
Q Consensus 123 ~Ritfie~~~~---------------dl~~~LD-~a-KvADlVll~idas~g~~~~~~~~fe~-eg~e~L~~l~aqG~P~ 184 (795)
..++|+..| . .+..|+. .+ ..+|+||+++|++.+ +.. +-.+++..+...|.|
T Consensus 130 ~~l~lvDTP-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~--------~~~~~~~~i~~~~~~~~~~- 199 (353)
T 2x2e_A 130 LNLTLVDLP-GMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSD--------LANSDALKVAKEVDPQGQR- 199 (353)
T ss_dssp CSEEEEECC-CBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSC--------GGGCHHHHHHHHHCTTCTT-
T ss_pred CCcEEEECC-CCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCc--------cchhHHHHHHHHhCcCCCc-
Confidence 578999887 4 2333443 22 567888999998753 322 234578888778876
Q ss_pred eEEEeccCCc
Q 003796 185 TAVLIRDLPT 194 (795)
Q Consensus 185 vigVl~~Ld~ 194 (795)
+++|++..|.
T Consensus 200 ~i~V~NK~Dl 209 (353)
T 2x2e_A 200 TIGVITKLDL 209 (353)
T ss_dssp EEEEEECGGG
T ss_pred eEEEeccccc
Confidence 6778998885
No 168
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=82.19 E-value=2.2 Score=40.86 Aligned_cols=106 Identities=9% Similarity=0.019 Sum_probs=61.2
Q ss_pred CCCEEEEEecCCCccChhhHHHHHHHhhccCCCC------Ccc---eEEEecCceeeEEEEeCCCC-ChHHHH-HHHhhh
Q 003796 77 SPPRVIVLFGLSASVNLNSVREDLLRQLSSEGTG------ALS---STVSSSKYRLRTSVLQAPHG-DLVGCM-EMAKVA 145 (795)
Q Consensus 77 ~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~------~g~---~tv~~~r~k~Ritfie~~~~-dl~~~L-D~aKvA 145 (795)
..++-|+|+|.++.+.. +| +..|+..... .+. ..+......-.++++..+-. ....+. ...+-|
T Consensus 21 ~~~~ki~~vG~~~~GKS-sl----~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 95 (194)
T 3reg_A 21 KKALKIVVVGDGAVGKT-CL----LLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADS 95 (194)
T ss_dssp CEEEEEEEECSTTSSHH-HH----HHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTC
T ss_pred ceeeEEEEECcCCCCHH-HH----HHHHhcCCCCCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHhHhhccCC
Confidence 34567999999998875 77 4444332221 111 12223333456788887621 222222 245679
Q ss_pred ceEEEeeeCCCccccccccccChHHHHHHHHHHhc--CCCceEEEeccCCc
Q 003796 146 DLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSL--GLPSTAVLIRDLPT 194 (795)
Q Consensus 146 DlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aq--G~P~vigVl~~Ld~ 194 (795)
|.+|+++|++.. ..|+.-...++..++.+ +.| ++.|++..|.
T Consensus 96 d~~i~v~d~~~~------~s~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl 139 (194)
T 3reg_A 96 DVVLLCFAVNNR------TSFDNISTKWEPEIKHYIDTAK-TVLVGLKVDL 139 (194)
T ss_dssp SEEEEEEETTCH------HHHHHHHHTHHHHHHHHCTTSE-EEEEEECGGG
T ss_pred cEEEEEEECCCH------HHHHHHHHHHHHHHHHhCCCCC-EEEEEEChhh
Confidence 999999999853 33544345566666654 344 5566777664
No 169
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=81.93 E-value=2.1 Score=41.30 Aligned_cols=105 Identities=9% Similarity=0.024 Sum_probs=59.6
Q ss_pred CCCEEEEEecCCCccChhhHHHHHHHhhccCCCCC----------cceEEEecCceeeEEEEeCCCCC-hHH-HHHHHhh
Q 003796 77 SPPRVIVLFGLSASVNLNSVREDLLRQLSSEGTGA----------LSSTVSSSKYRLRTSVLQAPHGD-LVG-CMEMAKV 144 (795)
Q Consensus 77 ~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~~----------g~~tv~~~r~k~Ritfie~~~~d-l~~-~LD~aKv 144 (795)
..++-|+|+|.++.++. +| +..|....... ...++.......+++|+.++-.. ... .....+-
T Consensus 31 ~~~~ki~vvG~~~~GKS-sl----i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 105 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKS-CL----LLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRG 105 (199)
T ss_dssp SEEEEEEEECCTTSCCT-TT----TTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CC
T ss_pred CcceEEEEECCCCCCHH-HH----HHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhc
Confidence 34567999999998876 66 66665433221 22334444445678888886311 111 2335677
Q ss_pred hceEEEeeeCCCccccccccccChHHHHHHHHHHhc---CCCceEEEeccCCc
Q 003796 145 ADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSL---GLPSTAVLIRDLPT 194 (795)
Q Consensus 145 ADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aq---G~P~vigVl~~Ld~ 194 (795)
||.+|||+|++.. ..|+. ..+++..+... +.| ++.|++..|.
T Consensus 106 ~d~~i~v~d~~~~------~s~~~-~~~~~~~i~~~~~~~~p-~ilv~nK~Dl 150 (199)
T 3l0i_B 106 AHGIIVVYDVTDQ------ESFNN-VKQWLQEIDRYASENVN-KLLVGNKCDL 150 (199)
T ss_dssp CSEEEECC-CCCS------HHHHH-HHHHHHHHHSCC-CCSE-EEEC-CCSSC
T ss_pred CCEEEEEEECCCH------HHHHH-HHHHHHHHHHhccCCCC-EEEEEECccC
Confidence 9999999999853 22332 23455555554 333 4556787775
No 170
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=81.88 E-value=6.6 Score=40.75 Aligned_cols=104 Identities=13% Similarity=0.007 Sum_probs=58.6
Q ss_pred CEEEEEecCCCccChhhHHHHHHHhhccCCC------CCc---ceEEEecCceeeEEEEeCCCC-ChHHHH-HHHhhhce
Q 003796 79 PRVIVLFGLSASVNLNSVREDLLRQLSSEGT------GAL---SSTVSSSKYRLRTSVLQAPHG-DLVGCM-EMAKVADL 147 (795)
Q Consensus 79 P~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~------~~g---~~tv~~~r~k~Ritfie~~~~-dl~~~L-D~aKvADl 147 (795)
+.-|+|+|.++.++. +| +..|+.... +.+ ..++......-.+.|+.++-. ....+. ...+-||.
T Consensus 155 ~~~i~i~G~~~~GKs-sl----i~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 229 (332)
T 2wkq_A 155 LIKCVVVGDGAVGKT-CL----LISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDV 229 (332)
T ss_dssp CEEEEEEESTTSSHH-HH----HHHHHHSCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSE
T ss_pred eeEEEEECCCCCChH-HH----HHHHHhCCCCcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCE
Confidence 566899999998875 67 444432211 111 122333434456668887631 122222 24567999
Q ss_pred EEEeeeCCCccccccccccChHHHHHHHHHHhc--CCCceEEEeccCCc
Q 003796 148 VAFVASASSFSEESMSYYIDSFGNQCLSVFRSL--GLPSTAVLIRDLPT 194 (795)
Q Consensus 148 Vll~idas~g~~~~~~~~fe~eg~e~L~~l~aq--G~P~vigVl~~Ld~ 194 (795)
+|+|+|++.. ..|+.....++..+..+ +.| ++.|++..|.
T Consensus 230 ~i~v~d~~~~------~s~~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl 271 (332)
T 2wkq_A 230 FLICFSLVSP------ASFHHVRAKWYPEVRHHCPNTP-IILVGTKLDL 271 (332)
T ss_dssp EEEEEETTCH------HHHHHHHHTHHHHHHHHCTTSC-EEEEEECHHH
T ss_pred EEEEEeCCCH------HHHHHHHHHHHHHHHhhCCCCc-EEEEEEchhc
Confidence 9999999853 23433333455566555 555 4566777664
No 171
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=81.54 E-value=2.3 Score=41.91 Aligned_cols=104 Identities=12% Similarity=0.030 Sum_probs=59.1
Q ss_pred CEEEEEecCCCccChhhHHHHHHHhhccCCC------CCcc---eEEEecCceeeEEEEeCCCC-ChHHHHH-HHhhhce
Q 003796 79 PRVIVLFGLSASVNLNSVREDLLRQLSSEGT------GALS---STVSSSKYRLRTSVLQAPHG-DLVGCME-MAKVADL 147 (795)
Q Consensus 79 P~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~------~~g~---~tv~~~r~k~Ritfie~~~~-dl~~~LD-~aKvADl 147 (795)
.+=|+|+|.++.+.. +| +..|+.... +.+. .++.......++.++..+-. ....+.. ..+-||.
T Consensus 27 ~~ki~vvG~~~vGKS-sL----~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 101 (214)
T 3q3j_B 27 RCKLVLVGDVQCGKT-AM----LQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDA 101 (214)
T ss_dssp CEEEEEECSTTSSHH-HH----HHHHHHSCCCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred eEEEEEECcCCCCHH-HH----HHHHhcCCCCCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeE
Confidence 455999999998876 67 444433221 1111 12233334567888887621 2222222 3567999
Q ss_pred EEEeeeCCCccccccccccChHHHHHHHHHHhc--CCCceEEEeccCCc
Q 003796 148 VAFVASASSFSEESMSYYIDSFGNQCLSVFRSL--GLPSTAVLIRDLPT 194 (795)
Q Consensus 148 Vll~idas~g~~~~~~~~fe~eg~e~L~~l~aq--G~P~vigVl~~Ld~ 194 (795)
+|||+|++.. ..|+..-..++..++.+ +.| ++.|++..|.
T Consensus 102 ~i~v~d~~~~------~s~~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl 143 (214)
T 3q3j_B 102 VLLCFDISRP------ETVDSALKKWRTEILDYCPSTR-VLLIGCKTDL 143 (214)
T ss_dssp EEEEEETTCT------HHHHHHHTHHHHHHHHHCTTSE-EEEEEECGGG
T ss_pred EEEEEECcCH------HHHHHHHHHHHHHHHHhCCCCC-EEEEEEChhh
Confidence 9999999853 33444345566666665 444 4555677764
No 172
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=81.54 E-value=15 Score=35.35 Aligned_cols=104 Identities=13% Similarity=0.069 Sum_probs=57.0
Q ss_pred CCEEEEEecCCCccChhhHHHHHHHhhccCC------CCC----cceEEEecCceeeEEEEeCCCC-ChHH-HHH-HHhh
Q 003796 78 PPRVIVLFGLSASVNLNSVREDLLRQLSSEG------TGA----LSSTVSSSKYRLRTSVLQAPHG-DLVG-CME-MAKV 144 (795)
Q Consensus 78 pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~------~~~----g~~tv~~~r~k~Ritfie~~~~-dl~~-~LD-~aKv 144 (795)
..+-|+|+|.++.++. +| ++.|++.. .+. ...++......-++.++..+-. .... +.. ..+-
T Consensus 22 ~~~ki~vvG~~~vGKS-sL----i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~ 96 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKS-TL----AGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQT 96 (195)
T ss_dssp CEEEEEEECSTTSSHH-HH----HHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHH
T ss_pred cEEEEEEECCCCCCHH-HH----HHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhcc
Confidence 3466999999998886 77 66664211 111 1123333444456666676522 2333 322 3566
Q ss_pred hceEEEeeeCCCccccccccccChHHHHHHHHHHh----cCCCceEEEeccCCc
Q 003796 145 ADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRS----LGLPSTAVLIRDLPT 194 (795)
Q Consensus 145 ADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~a----qG~P~vigVl~~Ld~ 194 (795)
||.+||++|.+.. ..|+.-. +.+..+.. .++| ++.|.+..|.
T Consensus 97 ~d~~ilv~d~~~~------~s~~~~~-~~~~~i~~~~~~~~~p-iilv~nK~Dl 142 (195)
T 3cbq_A 97 GDAFLIVFSVTDR------RSFSKVP-ETLLRLRAGRPHHDLP-VILVGNKSDL 142 (195)
T ss_dssp CSEEEEEEETTCH------HHHHTHH-HHHHHHHHHSTTSCCC-EEEEEECTTC
T ss_pred CCEEEEEEECCCH------HHHHHHH-HHHHHHHHhcCCCCCC-EEEEeechhc
Confidence 9999999999742 2233222 23333333 3555 5566777775
No 173
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=81.25 E-value=11 Score=42.35 Aligned_cols=99 Identities=10% Similarity=-0.002 Sum_probs=53.1
Q ss_pred EEEEEecCCCccChhhHHHHHHHhhccCCC---CC--c------ceEEEecCceeeEEEEeCCC-CChHH---------H
Q 003796 80 RVIVLFGLSASVNLNSVREDLLRQLSSEGT---GA--L------SSTVSSSKYRLRTSVLQAPH-GDLVG---------C 138 (795)
Q Consensus 80 ~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~---~~--g------~~tv~~~r~k~Ritfie~~~-~dl~~---------~ 138 (795)
+-|+|+|.++.++. +| +..|++.+. +. | ..++.... ..++|+..+- .+..+ .
T Consensus 234 ~kV~ivG~~nvGKS-SL----ln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~ 306 (476)
T 3gee_A 234 VSTVIAGKPNAGKS-TL----LNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRS 306 (476)
T ss_dssp EEEEEECCTTSSHH-HH----HHHCC------------------CEEEEETT--EEEEEEC-------------------
T ss_pred CEEEEECCCCCCHH-HH----HHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHH
Confidence 44999999998876 77 555544321 11 1 11223332 4677777652 22222 2
Q ss_pred HHHHhhhceEEEeeeCCCccccccccccCh--HHHHHHHHHHhcCCCceEEEeccCCc
Q 003796 139 MEMAKVADLVAFVASASSFSEESMSYYIDS--FGNQCLSVFRSLGLPSTAVLIRDLPT 194 (795)
Q Consensus 139 LD~aKvADlVll~idas~g~~~~~~~~fe~--eg~e~L~~l~aqG~P~vigVl~~Ld~ 194 (795)
+..++-||+||+|+|++.+ ..++. +..+++..+. +.| ++.|++..|.
T Consensus 307 ~~~~~~aD~vl~VvD~s~~------~s~~~~~~~~~~l~~l~--~~p-iIvV~NK~Dl 355 (476)
T 3gee_A 307 RMKMAEADLILYLLDLGTE------RLDDELTEIRELKAAHP--AAK-FLTVANKLDR 355 (476)
T ss_dssp -CCCSSCSEEEEEEETTTC------SSGGGHHHHHHHHHHCT--TSE-EEEEEECTTS
T ss_pred HhhcccCCEEEEEEECCCC------cchhhhHHHHHHHHhcC--CCC-EEEEEECcCC
Confidence 3446779999999999964 11211 4455565554 444 6777888885
No 174
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=80.63 E-value=7.4 Score=41.62 Aligned_cols=34 Identities=15% Similarity=0.083 Sum_probs=23.6
Q ss_pred eeEEEEeCCCCChHHHHHHHhhhceEEEeeeCCCc
Q 003796 123 LRTSVLQAPHGDLVGCMEMAKVADLVAFVASASSF 157 (795)
Q Consensus 123 ~Ritfie~~~~dl~~~LD~aKvADlVll~idas~g 157 (795)
..+.|+.+| .-......+.+.||++|+|+|++.+
T Consensus 149 ~~i~liDTp-G~~~~~~~~~~~aD~vl~Vvd~~~~ 182 (341)
T 2p67_A 149 YDVVIVETV-GVGQSETEVARMVDCFISLQIAGGG 182 (341)
T ss_dssp CSEEEEEEE-CCTTHHHHHHTTCSEEEEEECC---
T ss_pred CCEEEEeCC-CccchHHHHHHhCCEEEEEEeCCcc
Confidence 478899987 5333333467999999999999854
No 175
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=80.23 E-value=7.5 Score=39.92 Aligned_cols=62 Identities=19% Similarity=0.243 Sum_probs=40.2
Q ss_pred eeEEEEeCCCC---------------ChHH-HHHHHhhhc-eEEEeeeCCCccccccccccChH-HHHHHHHHHhcCCCc
Q 003796 123 LRTSVLQAPHG---------------DLVG-CMEMAKVAD-LVAFVASASSFSEESMSYYIDSF-GNQCLSVFRSLGLPS 184 (795)
Q Consensus 123 ~Ritfie~~~~---------------dl~~-~LD~aKvAD-lVll~idas~g~~~~~~~~fe~e-g~e~L~~l~aqG~P~ 184 (795)
..++|+..| + .+.. +...++-|| +||+++|++.+ +... -..++..+...|.|
T Consensus 125 ~~l~lvDtp-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~--------~~~~~~~~~~~~~~~~~~~- 194 (299)
T 2aka_B 125 LNLTLVDLP-GMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSD--------LANSDALKIAKEVDPQGQR- 194 (299)
T ss_dssp CSEEEEECC-CBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSC--------GGGCHHHHHHHHHCTTCSS-
T ss_pred CCceEEeCC-CCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcc--------hhhhHHHHHHHHhCCCCCe-
Confidence 589999887 4 1222 334555555 55579999854 3222 24688888878875
Q ss_pred eEEEeccCCc
Q 003796 185 TAVLIRDLPT 194 (795)
Q Consensus 185 vigVl~~Ld~ 194 (795)
+++|++..|.
T Consensus 195 ~i~V~NK~Dl 204 (299)
T 2aka_B 195 TIGVITKLDL 204 (299)
T ss_dssp EEEEEECGGG
T ss_pred EEEEEEcccc
Confidence 6778888875
No 176
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=79.57 E-value=9.2 Score=35.51 Aligned_cols=98 Identities=14% Similarity=0.157 Sum_probs=55.7
Q ss_pred CEEEEEecCCCccChhhHHHHHHHhhccCCC--CC--------cceEEEecCceeeEEEEeCCC-CChH------HHHHH
Q 003796 79 PRVIVLFGLSASVNLNSVREDLLRQLSSEGT--GA--------LSSTVSSSKYRLRTSVLQAPH-GDLV------GCMEM 141 (795)
Q Consensus 79 P~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~--~~--------g~~tv~~~r~k~Ritfie~~~-~dl~------~~LD~ 141 (795)
+..|+|+|+++.+.. +| ++.|++... .. ...++... ...++++..+- .... .+...
T Consensus 3 ~~~v~lvG~~gvGKS-tL----~~~l~~~~~~~~~~~~~t~~~~~~~~~~~--~~~l~i~Dt~G~~~~~~~~~~~~~~~~ 75 (165)
T 2wji_A 3 SYEIALIGNPNVGKS-TI----FNALTGENVYIGNWPGVTVEKKEGEFEYN--GEKFKVVDLPGVYSLTANSIDEIIARD 75 (165)
T ss_dssp EEEEEEECSTTSSHH-HH----HHHHHCCSSSCC-----CCCCCEEEEEET--TEEEEEEECCCCSCSSSSSHHHHHHHH
T ss_pred ccEEEEECCCCCCHH-HH----HHHHhCCCeeccCCCCcceeeeEEEEEEC--CcEEEEEECCCcccCCCcchhHHHHHH
Confidence 467999999998876 67 454543211 10 11122222 25788887762 1111 22221
Q ss_pred -H--hhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc
Q 003796 142 -A--KVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT 194 (795)
Q Consensus 142 -a--KvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~ 194 (795)
. .-||+|++++|++. ++. ..+++..+..+|.| ++.|++..|.
T Consensus 76 ~~~~~~~~~~i~v~D~~~---------~~~-~~~~~~~~~~~~~p-~ilv~nK~Dl 120 (165)
T 2wji_A 76 YIINEKPDLVVNIVDATA---------LER-NLYLTLQLMEMGAN-LLLALNKMDL 120 (165)
T ss_dssp HHHHHCCSEEEEEEETTC---------HHH-HHHHHHHHHHTTCC-EEEEEECHHH
T ss_pred HHhcCCCCEEEEEecCCc---------hhH-hHHHHHHHHhcCCC-EEEEEEchHh
Confidence 1 25899999999974 322 23355556667877 5566776664
No 177
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=77.45 E-value=9.4 Score=43.46 Aligned_cols=29 Identities=21% Similarity=0.232 Sum_probs=19.2
Q ss_pred CCCEEEEEecCCCccChhhHHHHHHHhhcc
Q 003796 77 SPPRVIVLFGLSASVNLNSVREDLLRQLSS 106 (795)
Q Consensus 77 ~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~ 106 (795)
.+|.+|+|+|+++++.+ +++..|...+..
T Consensus 99 ~~~~vI~ivG~~GvGKT-Tl~~kLA~~l~~ 127 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKT-TTCSKLAYYYQR 127 (504)
T ss_dssp S--EEEEEECSTTSSHH-HHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHH-HHHHHHHHHHHh
Confidence 56899999999987765 455555655543
No 178
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=77.34 E-value=6.3 Score=44.83 Aligned_cols=128 Identities=12% Similarity=0.068 Sum_probs=70.4
Q ss_pred CCEEEEEecCCCccChhhHHHHHHHhhccCCC------CCcceEE------------EecCceeeEEEEeCCC-CChHHH
Q 003796 78 PPRVIVLFGLSASVNLNSVREDLLRQLSSEGT------GALSSTV------------SSSKYRLRTSVLQAPH-GDLVGC 138 (795)
Q Consensus 78 pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~------~~g~~tv------------~~~r~k~Ritfie~~~-~dl~~~ 138 (795)
...=|+++|.++.+++ +| ++.+++... +.|.... .......+++++..+- ....++
T Consensus 40 ~~~kV~lvG~~~vGKS-SL----l~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~ 114 (535)
T 3dpu_A 40 QEIKVHLIGDGMAGKT-SL----LKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHAS 114 (535)
T ss_dssp CEEEEEEESSSCSSHH-HH----HHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTT
T ss_pred cceEEEEECCCCCCHH-HH----HHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHH
Confidence 3456999999998876 77 555544331 1121111 1111246788888762 122222
Q ss_pred HH-HHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcC--CCceEEEeccCCcchhhhHHHHHHHHhhcccccC
Q 003796 139 ME-MAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLG--LPSTAVLIRDLPTDLKKRKDLKKMCISSLTSEFP 215 (795)
Q Consensus 139 LD-~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG--~P~vigVl~~Ld~~~Kk~~~~kK~lk~~f~~ef~ 215 (795)
.. ..+-||++|+|+|++. + .....++..|...+ .| ++.|+++.|.. .++.-....++..+.. +
T Consensus 115 ~~~~l~~~d~ii~V~D~s~---------~-~~~~~~~~~l~~~~~~~p-vilV~NK~Dl~-~~~~v~~~~~~~~~~~-~- 180 (535)
T 3dpu_A 115 HQFFMTRSSVYMLLLDSRT---------D-SNKHYWLRHIEKYGGKSP-VIVVMNKIDEN-PSYNIEQKKINERFPA-I- 180 (535)
T ss_dssp CHHHHHSSEEEEEEECGGG---------G-GGHHHHHHHHHHHSSSCC-EEEEECCTTTC-TTCCCCHHHHHHHCGG-G-
T ss_pred HHHHccCCcEEEEEEeCCC---------c-hhHHHHHHHHHHhCCCCC-EEEEEECCCcc-cccccCHHHHHHHHHh-c-
Confidence 22 3456999999999984 2 23456777777766 66 56778988851 1111112223333322 1
Q ss_pred CCCeeEEeCC
Q 003796 216 EDCKFYAADT 225 (795)
Q Consensus 216 ~~~Klf~l~~ 225 (795)
+..+|.+|.
T Consensus 181 -~~~~~~vSA 189 (535)
T 3dpu_A 181 -ENRFHRISC 189 (535)
T ss_dssp -TTCEEECCC
T ss_pred -CCceEEEec
Confidence 456888884
No 179
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=76.63 E-value=12 Score=38.82 Aligned_cols=99 Identities=14% Similarity=0.154 Sum_probs=56.1
Q ss_pred CEEEEEecCCCccChhhHHHHHHHhhccCCC--CC--c----ceEEEecCceeeEEEEeCCC-CChH------HHH-HHH
Q 003796 79 PRVIVLFGLSASVNLNSVREDLLRQLSSEGT--GA--L----SSTVSSSKYRLRTSVLQAPH-GDLV------GCM-EMA 142 (795)
Q Consensus 79 P~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~--~~--g----~~tv~~~r~k~Ritfie~~~-~dl~------~~L-D~a 142 (795)
++.|+++|.++.++. +| +..|++... .. | ..+..... ...+.++..|- .++. .+. +..
T Consensus 3 ~~kI~lvG~~nvGKS-TL----~n~L~g~~~~v~~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~ 76 (272)
T 3b1v_A 3 MTEIALIGNPNSGKT-SL----FNLITGHNQRVGNWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYL 76 (272)
T ss_dssp CEEEEEECCTTSSHH-HH----HHHHHCCCCCCCSSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHH-HH----HHHHHCCCCcccCCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHH
Confidence 467999999998886 77 565654321 11 1 22222222 35788887762 1221 222 222
Q ss_pred h--hhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc
Q 003796 143 K--VADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT 194 (795)
Q Consensus 143 K--vADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~ 194 (795)
. -||+||+|+|++. ++. ...++..+...|.|- +.|++..|.
T Consensus 77 ~~~~~d~vi~V~D~t~---------~e~-~~~~~~~l~~~~~p~-ilv~NK~Dl 119 (272)
T 3b1v_A 77 LSQRADSILNVVDATN---------LER-NLYLTTQLIETGIPV-TIALNMIDV 119 (272)
T ss_dssp HTTCCSEEEEEEEGGG---------HHH-HHHHHHHHHHTCSCE-EEEEECHHH
T ss_pred hcCCCCEEEEEecCCc---------hHh-HHHHHHHHHhcCCCE-EEEEEChhh
Confidence 2 3999999999984 221 223344455578884 455666664
No 180
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=75.85 E-value=15 Score=39.70 Aligned_cols=82 Identities=16% Similarity=0.227 Sum_probs=45.1
Q ss_pred ceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc-chhhhHHHHHHHHhhcccccCCCCeeEEeC
Q 003796 146 DLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT-DLKKRKDLKKMCISSLTSEFPEDCKFYAAD 224 (795)
Q Consensus 146 DlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~-~~Kk~~~~kK~lk~~f~~ef~~~~Klf~l~ 224 (795)
|++|++|+++. ..|.....+++..|. .++| +|.|++..|. ........++.++..+... +..+|.+|
T Consensus 147 ~~~vy~I~~~~-------~~l~~~d~~~~~~l~-~~~p-iIlV~NK~Dl~~~~ev~~~k~~i~~~~~~~---~i~~~~~S 214 (361)
T 2qag_A 147 HCCFYFISPFG-------HGLKPLDVAFMKAIH-NKVN-IVPVIAKADTLTLKERERLKKRILDEIEEH---NIKIYHLP 214 (361)
T ss_dssp CEEEEEECSSS-------SSCCHHHHHHHHHTC-S-SC-EEEEEECCSSSCHHHHHHHHHHHHHHTTCC----CCSCCCC
T ss_pred EEEEEEEecCC-------CCcchhHHHHHHHhc-cCCC-EEEEEECCCCCCHHHHHHHHHHHHHHHHHC---CCCEEeCC
Confidence 46777887632 236666678888774 5666 7888998885 1122223344555544332 45677766
Q ss_pred C-----HHHHHHHHHHHhhc
Q 003796 225 T-----KDELHKFLWLFKEQ 239 (795)
Q Consensus 225 ~-----~~E~~nL~R~Is~~ 239 (795)
. ......|++.|...
T Consensus 215 a~~~~~~e~~~~l~~~i~~~ 234 (361)
T 2qag_A 215 DAESDEDEDFKEQTRLLKAS 234 (361)
T ss_dssp ---------CHHHHHHHHHT
T ss_pred CcCCCcchhHHHHHHHHHhc
Confidence 3 22345667776543
No 181
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=73.37 E-value=0.88 Score=44.20 Aligned_cols=104 Identities=13% Similarity=0.037 Sum_probs=56.8
Q ss_pred CEEEEEecCCCccChhhHHHHHHHhhccCCC------CCc---ceEEEecCceeeEEEEeCCC-CChHHHH-HHHhhhce
Q 003796 79 PRVIVLFGLSASVNLNSVREDLLRQLSSEGT------GAL---SSTVSSSKYRLRTSVLQAPH-GDLVGCM-EMAKVADL 147 (795)
Q Consensus 79 P~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~------~~g---~~tv~~~r~k~Ritfie~~~-~dl~~~L-D~aKvADl 147 (795)
++-|+|+|.++.+.. +| +..|+.... +.+ ..++......-+++|+.+|- .+...+. ..++-||.
T Consensus 30 ~~ki~v~G~~~~GKS-sl----i~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 104 (204)
T 3th5_A 30 AIKCVVVGDGAVGKT-CL----LISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDV 104 (204)
Confidence 455899999987775 66 333322111 111 11222222334566776652 1222222 24567999
Q ss_pred EEEeeeCCCccccccccccChHHHHHHHHHHhc--CCCceEEEeccCCc
Q 003796 148 VAFVASASSFSEESMSYYIDSFGNQCLSVFRSL--GLPSTAVLIRDLPT 194 (795)
Q Consensus 148 Vll~idas~g~~~~~~~~fe~eg~e~L~~l~aq--G~P~vigVl~~Ld~ 194 (795)
+|||+|++.. ..|+.....++..++.. +.| ++.|++..|.
T Consensus 105 iilv~D~~~~------~s~~~~~~~~~~~l~~~~~~~p-iilv~NK~Dl 146 (204)
T 3th5_A 105 FLICFSLVSP------ASFENVRAKWYPEVRHHCPNTP-IILVGTKLDL 146 (204)
Confidence 9999998853 33544434556666655 555 4556777775
No 182
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=70.22 E-value=11 Score=45.15 Aligned_cols=43 Identities=23% Similarity=0.092 Sum_probs=33.3
Q ss_pred hhhceEEEeeeCCCccccccccccC-hHHHHHHHHHHhcCCCceEEEeccCCc
Q 003796 143 KVADLVAFVASASSFSEESMSYYID-SFGNQCLSVFRSLGLPSTAVLIRDLPT 194 (795)
Q Consensus 143 KvADlVll~idas~g~~~~~~~~fe-~eg~e~L~~l~aqG~P~vigVl~~Ld~ 194 (795)
+-||+||+|+||+.+ +. .+...++..|...|.| +++||+..|.
T Consensus 186 ~~aDlIL~VVDAs~~--------~~~~d~l~ll~~L~~~g~p-vIlVlNKiDl 229 (772)
T 3zvr_A 186 KENCLILAVSPANSD--------LANSDALKIAKEVDPQGQR-TIGVITKLDL 229 (772)
T ss_dssp STTEEEEEEEETTSC--------SSSCHHHHHHHHHCTTCSS-EEEEEECTTS
T ss_pred cCCcEEEEEEcCCCC--------cchhHHHHHHHHHHhcCCC-EEEEEeCccc
Confidence 468999999999964 32 2345788999888877 6778898885
No 183
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=66.28 E-value=6.5 Score=43.85 Aligned_cols=67 Identities=15% Similarity=0.148 Sum_probs=40.0
Q ss_pred eEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc-chhhhHHHHHHHHhhcccccCCCCeeEEeCC
Q 003796 147 LVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT-DLKKRKDLKKMCISSLTSEFPEDCKFYAADT 225 (795)
Q Consensus 147 lVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~-~~Kk~~~~kK~lk~~f~~ef~~~~Klf~l~~ 225 (795)
+|+|++|+..| +...-.+++..|. . -.+||.|++..|. ........++.++..+.. .|..+|+++.
T Consensus 151 ~v~fI~d~~~~--------l~~~Dieilk~L~-~-~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~---~gi~I~~is~ 217 (427)
T 2qag_B 151 CLYFIAPTGHS--------LKSLDLVTMKKLD-S-KVNIIPIIAKADAISKSELTKFKIKITSELVS---NGVQIYQFPT 217 (427)
T ss_dssp EEEEECCCC-----------CHHHHHHHHHTC-S-CSEEEEEESCGGGSCHHHHHHHHHHHHHHHBT---TBCCCCCCC-
T ss_pred EEEEEeCCCCC--------CCHHHHHHHHHHh-h-CCCEEEEEcchhccchHHHHHHHHHHHHHHHH---cCCcEEecCC
Confidence 57888888754 4444478888886 4 4568888887664 112233445555544443 4788888885
Q ss_pred H
Q 003796 226 K 226 (795)
Q Consensus 226 ~ 226 (795)
.
T Consensus 218 ~ 218 (427)
T 2qag_B 218 D 218 (427)
T ss_dssp -
T ss_pred C
Confidence 3
No 184
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=63.44 E-value=37 Score=37.49 Aligned_cols=139 Identities=14% Similarity=0.143 Sum_probs=71.9
Q ss_pred EEEEecCCCccChhhHHHHHHHhhccCCC-------CC-cce--EEEecCceeeEEEEeCCCCC---------h-HHHHH
Q 003796 81 VIVLFGLSASVNLNSVREDLLRQLSSEGT-------GA-LSS--TVSSSKYRLRTSVLQAPHGD---------L-VGCME 140 (795)
Q Consensus 81 iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~-------~~-g~~--tv~~~r~k~Ritfie~~~~d---------l-~~~LD 140 (795)
.|++||+++.+++ +| ++.++.... +. .|. .|.... ...+++...| .- + ...+.
T Consensus 159 ~VgLVG~~gAGKS-TL----L~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~-~~~~~l~Dtp-Gli~~a~~~~~L~~~fl~ 231 (416)
T 1udx_A 159 DVGLVGYPNAGKS-SL----LAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-EERFTLADIP-GIIEGASEGKGLGLEFLR 231 (416)
T ss_dssp SEEEECCGGGCHH-HH----HHHHCSSCCEECCCTTCSSCCEEEEEECSS-SCEEEEEECC-CCCCCGGGSCCSCHHHHH
T ss_pred EEEEECCCCCcHH-HH----HHHHHcCCccccCcccceecceeeEEEecC-cceEEEEecc-ccccchhhhhhhhHHHHH
Confidence 5899999998875 67 666654421 11 111 122221 2567777776 32 1 23455
Q ss_pred HHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHh-cCCCceEEEeccCCcchhhhHHHHHHHHhhcccccCCCCe
Q 003796 141 MAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRS-LGLPSTAVLIRDLPTDLKKRKDLKKMCISSLTSEFPEDCK 219 (795)
Q Consensus 141 ~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~a-qG~P~vigVl~~Ld~~~Kk~~~~kK~lk~~f~~ef~~~~K 219 (795)
...-||.+|+++|++ . +....+...-.+++.+..+ ..-|.+ .|++.+|. ... .....+++.+.. .+..
T Consensus 232 ~~era~~lL~vvDls-~---~~~~~ls~g~~el~~la~aL~~~P~I-LVlNKlDl--~~~-~~~~~l~~~l~~---~g~~ 300 (416)
T 1udx_A 232 HIARTRVLLYVLDAA-D---EPLKTLETLRKEVGAYDPALLRRPSL-VALNKVDL--LEE-EAVKALADALAR---EGLA 300 (416)
T ss_dssp HHTSSSEEEEEEETT-S---CHHHHHHHHHHHHHHHCHHHHHSCEE-EEEECCTT--SCH-HHHHHHHHHHHT---TTSC
T ss_pred HHHHHHhhhEEeCCc-c---CCHHHHHHHHHHHHHHhHHhhcCCEE-EEEECCCh--hhH-HHHHHHHHHHHh---cCCe
Confidence 566799999999986 1 0001122222334333222 245654 45699997 222 223333333322 2457
Q ss_pred eEEeCC--HHHHHHHHHHHh
Q 003796 220 FYAADT--KDELHKFLWLFK 237 (795)
Q Consensus 220 lf~l~~--~~E~~nL~R~Is 237 (795)
++.+|. ...+..|+..|.
T Consensus 301 vi~iSA~~g~gi~eL~~~i~ 320 (416)
T 1udx_A 301 VLPVSALTGAGLPALKEALH 320 (416)
T ss_dssp EEECCTTTCTTHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHH
Confidence 788773 233444554444
No 185
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=62.53 E-value=63 Score=35.64 Aligned_cols=148 Identities=9% Similarity=-0.059 Sum_probs=81.9
Q ss_pred CCEEEEEecCCCccChhhHHHHHHHhhccCCCC--C-cc-eE----EEecCceeeEEEEeCCC-----CChHHHHHHHhh
Q 003796 78 PPRVIVLFGLSASVNLNSVREDLLRQLSSEGTG--A-LS-ST----VSSSKYRLRTSVLQAPH-----GDLVGCMEMAKV 144 (795)
Q Consensus 78 pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~--~-g~-~t----v~~~r~k~Ritfie~~~-----~dl~~~LD~aKv 144 (795)
.+.+|+|+|+++.++. +|++.|...+.-.... . |. +| +.-...-..+++++.+. ..+..+|+...+
T Consensus 68 ~~~~valvG~nGaGKS-TLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L 146 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKS-SFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKF 146 (413)
T ss_dssp CCEEEEEEECTTSSHH-HHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTG
T ss_pred CCeEEEEECCCCCcHH-HHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHHHHHHHHHHcCC
Confidence 3568999999998875 6733333322111111 0 21 10 11111112567766531 346777777666
Q ss_pred hc--eEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEE-----------eccCCcchhhhHHHHHHHHhhcc
Q 003796 145 AD--LVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVL-----------IRDLPTDLKKRKDLKKMCISSLT 211 (795)
Q Consensus 145 AD--lVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigV-----------l~~Ld~~~Kk~~~~kK~lk~~f~ 211 (795)
.+ .+++ +|+.. +...-..+..+|...|.|-++.+ ...||. ..+.++.+.++...+
T Consensus 147 ~~~~~~~~-lS~G~---------~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~--~~~~~l~~~l~~l~~ 214 (413)
T 1tq4_A 147 YEYDFFII-ISATR---------FKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQT--FDKEKVLQDIRLNCV 214 (413)
T ss_dssp GGCSEEEE-EESSC---------CCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTT--CCHHHHHHHHHHHHH
T ss_pred CccCCeEE-eCCCC---------ccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCH--HHHHHHHHHHHHHHH
Confidence 54 4444 77652 45566788889988898765544 135665 445556666666543
Q ss_pred c---cc-CCCCeeEEeCC--HHH--HHHHHHHHhh
Q 003796 212 S---EF-PEDCKFYAADT--KDE--LHKFLWLFKE 238 (795)
Q Consensus 212 ~---ef-~~~~Klf~l~~--~~E--~~nL~R~Is~ 238 (795)
. +. .+...+|.+|+ .++ +-.|+-.|..
T Consensus 215 ~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~ 249 (413)
T 1tq4_A 215 NTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLIS 249 (413)
T ss_dssp HHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHH
T ss_pred HHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHH
Confidence 1 21 22468888886 444 7777766643
No 186
>1sqr_A 50S ribosomal protein L35AE; PFR48, structure, autostructure, northeast structural genomics consortium, beta-barrel; NMR {Pyrococcus furiosus} SCOP: b.43.3.3 PDB: 2lp6_A
Probab=61.90 E-value=7.1 Score=34.33 Aligned_cols=53 Identities=25% Similarity=0.302 Sum_probs=41.8
Q ss_pred eeeEEEeec-CCChhhccccccceeeec--cc--ccceeeCCCCCCceeEEEeccccc
Q 003796 716 KLKAIVRYM-FHNPEDVRWFKPVEVWTK--CG--RRGRIKEPVGTHGAMKCVFNGILQ 768 (795)
Q Consensus 716 K~tA~Ir~M-F~n~~dV~~Fk~a~L~Tk--sG--irG~IK~~lgt~G~fka~Fe~~i~ 768 (795)
-+||.||== -++.+|.+||-|-.+-=+ .| |-|.|..|-|..|.+||.|...|-
T Consensus 19 ~~~aLlkIegV~~k~~a~fYlGKrvayvyka~rviwGKVtR~HGnsGvVrAkF~~nLP 76 (95)
T 1sqr_A 19 NNVMIIKPLDVNSREEASKLIGRLVLWKSPSGKILKGKIVRVHGTKGAVRARFEKGLP 76 (95)
T ss_dssp CCEEEEEESCCCCHHHHHHHTTCEEEECCSTTCCEEEEEEEESSSSSCEEEECSSCCS
T ss_pred CceEEEEEcCCCCHHHHHhhcCCeEEEEECCCCEEEEEEEeeeCCCCEEEEEeCCCCC
Confidence 356666643 688899999988776544 33 779999999999999999997764
No 187
>4a18_H RPL35A; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_H 4a1b_H 4a1d_H
Probab=61.81 E-value=12 Score=33.82 Aligned_cols=65 Identities=23% Similarity=0.353 Sum_probs=49.8
Q ss_pred EeeeeEEEeec-CCChhhccccccceee----ec--cc-----ccceeeCCCCCCceeEEEeccccc---cccEEEEecc
Q 003796 714 VSKLKAIVRYM-FHNPEDVRWFKPVEVW----TK--CG-----RRGRIKEPVGTHGAMKCVFNGILQ---QRDTVCMSLY 778 (795)
Q Consensus 714 I~K~tA~Ir~M-F~n~~dV~~Fk~a~L~----Tk--sG-----irG~IK~~lgt~G~fka~Fe~~i~---~~D~V~m~ly 778 (795)
-+-|||.||== =++.+|..||-|-.+- ++ .| |-|.|..|-|..|.+||.|...|- +++.|.+-||
T Consensus 30 Q~~~taLlKIeGV~~~~~a~fylGKrvayvykak~~~g~k~RviwGKVtR~HGnsGvVrAkF~~nLP~kA~G~~VrVmLy 109 (113)
T 4a18_H 30 QNSNQALLKLQNVNTKEDVAFYQGKRVVYIYKGQKKNGSNYRTIWGRIGKAHGNNGVAVARFAHNLPPQAIGSVLRVMLY 109 (113)
T ss_dssp EEEEEEEEEETTCCSHHHHHTTTTCEEEEEEEEEEETTEEEEEEEEEEEEEETTTTEEEEEESSCCCGGGGGSEEEEECC
T ss_pred CCCCeEEEEEcCcCCHHHHHhhcCCeEEEEEecCCCCCCeEEEEEEEEEeeeCCCCeEEEEeCCCCChHHcCCeEEEEEe
Confidence 56678888754 5788999999886542 22 34 349999999999999999998874 4566877777
No 188
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=60.29 E-value=1.6e+02 Score=32.75 Aligned_cols=30 Identities=17% Similarity=0.386 Sum_probs=20.6
Q ss_pred CCCEEEEEecCCCccChhhHHHHHHHhhccC
Q 003796 77 SPPRVIVLFGLSASVNLNSVREDLLRQLSSE 107 (795)
Q Consensus 77 ~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~ 107 (795)
++|.+|+++|+++++.+ +++..|..+|...
T Consensus 98 ~~p~vIlivG~~G~GKT-Tt~~kLA~~l~~~ 127 (443)
T 3dm5_A 98 EKPTILLMVGIQGSGKT-TTVAKLARYFQKR 127 (443)
T ss_dssp SSSEEEEEECCTTSSHH-HHHHHHHHHHHTT
T ss_pred CCCeEEEEECcCCCCHH-HHHHHHHHHHHHC
Confidence 57999999999997765 3334445555443
No 189
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=58.78 E-value=36 Score=35.51 Aligned_cols=106 Identities=15% Similarity=0.157 Sum_probs=56.3
Q ss_pred CEEEEEecCCCccChhhHHHHHHHhhcc-----CCCCCcce--EEEecCceeeEEEEeCCCCChH-------H-HHHHHh
Q 003796 79 PRVIVLFGLSASVNLNSVREDLLRQLSS-----EGTGALSS--TVSSSKYRLRTSVLQAPHGDLV-------G-CMEMAK 143 (795)
Q Consensus 79 P~iV~Vvg~~~~~~~~sl~~~lvk~~~~-----~~~~~g~~--tv~~~r~k~Ritfie~~~~dl~-------~-~LD~aK 143 (795)
.+=|+++|.++.+.. +|++.++..+.. ...+.+.. ++.... ..++.++.+| +.-. . .-...+
T Consensus 3 ~~KI~lvG~~~vGKS-SLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~-~~~l~i~Dt~-G~~~~~~~~~~~~~~~~~~ 79 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKS-SMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLG-NMTLNLWDCG-GQDVFMENYFTKQKDHIFQ 79 (307)
T ss_dssp EEEEEEECCTTSSHH-HHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETT-TEEEEEEEEC-CSHHHHHHHHTTTHHHHHT
T ss_pred ceEEEEECCCCCCHH-HHHHHHHhCCCCccccCcCCccceEEEEEEeCC-ceEEEEEECC-CcHHHhhhhhhhHHHHHhc
Confidence 345899999998886 773333322100 01111221 122222 4678889887 4421 1 223346
Q ss_pred hhceEEEeeeCCCccccccccccChHH--HHHHHHHHhc--CCCceEEEeccCCc
Q 003796 144 VADLVAFVASASSFSEESMSYYIDSFG--NQCLSVFRSL--GLPSTAVLIRDLPT 194 (795)
Q Consensus 144 vADlVll~idas~g~~~~~~~~fe~eg--~e~L~~l~aq--G~P~vigVl~~Ld~ 194 (795)
-||.+|+|+|++.. ..|+.-. .+.|..++.+ |.| ++.|++..|.
T Consensus 80 ~ad~vi~V~D~t~~------~s~~~l~~~~~~l~~l~~~~~~~p-iilv~NK~Dl 127 (307)
T 3r7w_A 80 MVQVLIHVFDVEST------EVLKDIEIFAKALKQLRKYSPDAK-IFVLLHKMDL 127 (307)
T ss_dssp TCSEEEEEEETTCS------CHHHHHHHHHHHHHHHHHHCTTCE-EEEEEECGGG
T ss_pred cCCEEEEEEECCCh------hhHHHHHHHHHHHHHHHHhCCCCe-EEEEEecccc
Confidence 79999999999853 2233221 2233333333 555 5666787775
No 190
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=58.69 E-value=20 Score=39.36 Aligned_cols=34 Identities=12% Similarity=0.200 Sum_probs=22.9
Q ss_pred eeEEEEeCCCCCh----------HHHHHHHhhhceEEEeeeCCCc
Q 003796 123 LRTSVLQAPHGDL----------VGCMEMAKVADLVAFVASASSF 157 (795)
Q Consensus 123 ~Ritfie~~~~dl----------~~~LD~aKvADlVll~idas~g 157 (795)
..+.|+..| .-. +..+...+-||.+|+|+|++.+
T Consensus 71 ~~i~lvDtp-G~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 71 IPVKMVDVA-GLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp EEEEEEECC----------------CCCSSTTCSEEEEEEETTCC
T ss_pred EEEEEEECC-CcccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 468888776 321 2334567889999999999864
No 191
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=58.55 E-value=45 Score=31.23 Aligned_cols=103 Identities=16% Similarity=0.115 Sum_probs=50.5
Q ss_pred EEEEEecCCCccChhhHHHHHHHhhccCC-C--CC-----cc----eEEEe---cCceeeEEEEeCCCC-ChHHHH-HHH
Q 003796 80 RVIVLFGLSASVNLNSVREDLLRQLSSEG-T--GA-----LS----STVSS---SKYRLRTSVLQAPHG-DLVGCM-EMA 142 (795)
Q Consensus 80 ~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~-~--~~-----g~----~tv~~---~r~k~Ritfie~~~~-dl~~~L-D~a 142 (795)
+-|+|+|+++.+.. +| ++.|+... . .. |. .++.. ......+.++..+-. ...++. ...
T Consensus 3 ~kv~ivG~~gvGKS-tL----l~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~ 77 (184)
T 2zej_A 3 MKLMIVGNTGSGKT-TL----LQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFM 77 (184)
T ss_dssp CEEEEESCTTSSHH-HH----HHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHH
T ss_pred eEEEEECCCCCCHH-HH----HHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHc
Confidence 34899999998876 77 55554421 1 10 21 11111 111345666665411 111111 123
Q ss_pred hhhceEEEeeeCCCccccccccccChHHHHHHHHHHhc--CCCceEEEeccCCc
Q 003796 143 KVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSL--GLPSTAVLIRDLPT 194 (795)
Q Consensus 143 KvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aq--G~P~vigVl~~Ld~ 194 (795)
+-||++++++|.+.+. ..|+.- ...|..++.+ +.| ++.|.++.|.
T Consensus 78 ~~~~~~i~v~d~~~~~-----~s~~~~-~~~~~~~~~~~~~~p-iilv~nK~Dl 124 (184)
T 2zej_A 78 TQRALYLAVYDLSKGQ-----AEVDAM-KPWLFNIKARASSSP-VILVGTHLDV 124 (184)
T ss_dssp HHSEEEEEEEEGGGCH-----HHHHTH-HHHHHHHHHHCTTCE-EEEEEECGGG
T ss_pred cCCcEEEEEEeCCcch-----hHHHHH-HHHHHHHHhhCCCCc-EEEEEECCCc
Confidence 5589999999987430 113322 2334434333 443 5666788885
No 192
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=56.44 E-value=25 Score=35.31 Aligned_cols=63 Identities=21% Similarity=0.181 Sum_probs=46.1
Q ss_pred eEEEEeCCCCChHHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc
Q 003796 124 RTSVLQAPHGDLVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT 194 (795)
Q Consensus 124 Ritfie~~~~dl~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~ 194 (795)
.+.+|.||+..-...+.++..||.||+++.++.. .+ .....++..|+..|.+.+-.|++..+.
T Consensus 112 D~viiD~~~~~~~~~~~~~~~ad~vi~v~~~~~~-------~~-~~~~~~~~~l~~~~~~~~~vv~N~~~~ 174 (263)
T 1hyq_A 112 DILLLDAPAGLERSAVIAIAAAQELLLVVNPEIS-------SI-TDGLKTKIVAERLGTKVLGVVVNRITT 174 (263)
T ss_dssp SEEEEECCSSSSHHHHHHHHHSSEEEEEECSSHH-------HH-HHHHHHHHHHHHHTCEEEEEEEEEECT
T ss_pred CEEEEeCCCCCChHHHHHHHHCCEEEEEeCCChh-------HH-HHHHHHHHHHHhcCCCeeEEEEccCCc
Confidence 5678888754446677889999999999988742 11 246778888888888665556787775
No 193
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=55.51 E-value=15 Score=36.23 Aligned_cols=63 Identities=17% Similarity=0.125 Sum_probs=45.5
Q ss_pred eEEEEeCCCCChHHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc
Q 003796 124 RTSVLQAPHGDLVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT 194 (795)
Q Consensus 124 Ritfie~~~~dl~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~ 194 (795)
.+.+|.||+.--...+.++..||.||+++.++.. .+ .....++..+...|++.+..|++..+.
T Consensus 133 D~viiD~pp~~~~~~~~~l~~aD~viiv~~~~~~-------s~-~~~~~~~~~~~~~~~~~~~~v~N~~~~ 195 (254)
T 3kjh_A 133 EAVVMDMGAGIEHLTRGTAKAVDMMIAVIEPNLN-------SI-KTGLNIEKLAGDLGIKKVRYVINKVRN 195 (254)
T ss_dssp SEEEEEECTTCTTCCHHHHTTCSEEEEEECSSHH-------HH-HHHHHHHHHHHHHTCSCEEEEEEEECC
T ss_pred CEEEEeCCCcccHHHHHHHHHCCEEEEecCCCHH-------HH-HHHHHHHHHHHHcCCccEEEEEeCCCC
Confidence 4667888753333456677899999999998741 12 245677788889999888778887765
No 194
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=54.49 E-value=67 Score=31.50 Aligned_cols=103 Identities=11% Similarity=-0.008 Sum_probs=52.7
Q ss_pred CEEEEEecCCCccChhhHHHHHHHhhccCCC---C----Cc----ceEEEecCceeeEEEEeCCCCC--hHHHHHH-Hhh
Q 003796 79 PRVIVLFGLSASVNLNSVREDLLRQLSSEGT---G----AL----SSTVSSSKYRLRTSVLQAPHGD--LVGCMEM-AKV 144 (795)
Q Consensus 79 P~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~---~----~g----~~tv~~~r~k~Ritfie~~~~d--l~~~LD~-aKv 144 (795)
.+-|+|||.++.+.. +| +..|+.... . .| ..++......-.+.++...-.. ...+... .+.
T Consensus 37 ~~kVvlvG~~~vGKS-SL----l~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~ 111 (211)
T 2g3y_A 37 YYRVVLIGEQGVGKS-TL----ANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQV 111 (211)
T ss_dssp EEEEEEECCTTSSHH-HH----HHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCC
T ss_pred ceEEEEECCCCCCHH-HH----HHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhh
Confidence 456999999998886 67 555542111 1 12 1223333333345555443111 1122221 245
Q ss_pred hceEEEeeeCCCccccccccccChHHHHHHHHHH----hcCCCceEEEeccCCc
Q 003796 145 ADLVAFVASASSFSEESMSYYIDSFGNQCLSVFR----SLGLPSTAVLIRDLPT 194 (795)
Q Consensus 145 ADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~----aqG~P~vigVl~~Ld~ 194 (795)
||.+|+|+|.+.- ..|+.-. +.+..|. ..+.| ++.|.+..|.
T Consensus 112 a~~~ilVydvt~~------~sf~~~~-~~~~~l~~~~~~~~~p-iilVgNK~DL 157 (211)
T 2g3y_A 112 GDAYLIVYSITDR------ASFEKAS-ELRIQLRRARQTEDIP-IILVGNKSDL 157 (211)
T ss_dssp CSEEEEEEETTCH------HHHHHHH-HHHHHHHTSGGGTTSC-EEEEEECTTC
T ss_pred CCEEEEEEECCCH------HHHHHHH-HHHHHHHHHhCCCCCc-EEEEEEChHH
Confidence 8999999998731 2344322 2222232 23666 6677888775
No 195
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=50.58 E-value=45 Score=31.70 Aligned_cols=76 Identities=14% Similarity=0.025 Sum_probs=50.2
Q ss_pred eEEEEeCCCCChHHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCC--C--ceEEEeccCCcchhhh
Q 003796 124 RTSVLQAPHGDLVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGL--P--STAVLIRDLPTDLKKR 199 (795)
Q Consensus 124 Ritfie~~~~dl~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~--P--~vigVl~~Ld~~~Kk~ 199 (795)
.+.+|.||+..-.....++..||.||+++.++.. +.....++..|+..+- | ++..|++..+...+-.
T Consensus 77 D~viiD~~~~~~~~~~~~l~~ad~viiv~~~~~~---------~~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~~~~ 147 (206)
T 4dzz_A 77 DFAIVDGAGSLSVITSAAVMVSDLVIIPVTPSPL---------DFSAAGSVVTVLEAQAYSRKVEARFLITRKIEMATML 147 (206)
T ss_dssp SEEEEECCSSSSHHHHHHHHHCSEEEEEECSCTT---------THHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHCCEEEEEecCCHH---------HHHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCchHH
Confidence 5678888865555667888999999999998852 2567788888876652 2 2345578877521222
Q ss_pred HHHHHHHHh
Q 003796 200 KDLKKMCIS 208 (795)
Q Consensus 200 ~~~kK~lk~ 208 (795)
..+++.++.
T Consensus 148 ~~~~~~l~~ 156 (206)
T 4dzz_A 148 NVLKESIKD 156 (206)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 345555554
No 196
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=47.28 E-value=81 Score=29.82 Aligned_cols=104 Identities=9% Similarity=0.018 Sum_probs=55.7
Q ss_pred CEEEEEecCCCccChhhHHHHHHHhhccCCC------CCc----ceEEEecCceeeEEEEeCCCCC-hHH-HHHHHhhhc
Q 003796 79 PRVIVLFGLSASVNLNSVREDLLRQLSSEGT------GAL----SSTVSSSKYRLRTSVLQAPHGD-LVG-CMEMAKVAD 146 (795)
Q Consensus 79 P~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~------~~g----~~tv~~~r~k~Ritfie~~~~d-l~~-~LD~aKvAD 146 (795)
.+-|+|+|+++.++. +| ++.|+.... +.| .-++......-++.++..+... ... ..-..+-||
T Consensus 5 ~~kv~lvG~~g~GKS-TL----l~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~ 79 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKS-NL----LSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAV 79 (199)
T ss_dssp EEEEEEESSTTSSHH-HH----HHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCS
T ss_pred eEEEEEECcCCCCHH-HH----HHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCC
Confidence 456999999998886 67 555544321 111 1233334334466667665211 111 122346789
Q ss_pred eEEEeeeCCCccccccccccChHHHHHHHHHHhcC--CCceEEEeccCCc
Q 003796 147 LVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLG--LPSTAVLIRDLPT 194 (795)
Q Consensus 147 lVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG--~P~vigVl~~Ld~ 194 (795)
.+|+++|.+.. ..|+. ...++..+.... -..++.|++.+|.
T Consensus 80 ~~i~v~d~~~~------~s~~~-~~~~~~~~~~~~~~~~~i~~v~nK~Dl 122 (199)
T 2f9l_A 80 GALLVYDIAKH------LTYEN-VERWLKELRDHADSNIVIMLVGNKSDL 122 (199)
T ss_dssp EEEEEEETTCH------HHHHT-HHHHHHHHHHHSCTTCEEEEEEECTTC
T ss_pred EEEEEEECcCH------HHHHH-HHHHHHHHHHhcCCCCeEEEEEECccc
Confidence 99999998742 12321 123344444332 1346667888775
No 197
>3j21_c 50S ribosomal protein L35AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} PDB: 1sqr_A 2lp6_A
Probab=46.86 E-value=15 Score=31.86 Aligned_cols=53 Identities=23% Similarity=0.281 Sum_probs=37.0
Q ss_pred eeEEEeec-CCChhhcccccccee--eeccc--ccceeeCCCCCCceeEEEecccccc
Q 003796 717 LKAIVRYM-FHNPEDVRWFKPVEV--WTKCG--RRGRIKEPVGTHGAMKCVFNGILQQ 769 (795)
Q Consensus 717 ~tA~Ir~M-F~n~~dV~~Fk~a~L--~TksG--irG~IK~~lgt~G~fka~Fe~~i~~ 769 (795)
|||.||== =++.+|..||-|-.+ .++.| |.|.|..|-|..|.+||.|...|-.
T Consensus 20 ~taLlkieGV~~~~~a~fylGKrvayv~~~g~~iwGKVtr~HGnsGvVrAkF~~nLP~ 77 (87)
T 3j21_c 20 NVMIIKPLDVNSREEASKLIGRLVLWKSPSGKILKGKIVRVHGTKGAVRARFEKGLPG 77 (87)
T ss_dssp TCEEEEESSCCSHHHHGGGTTCEEEECCSSSCCEEEEEEEECCSSSCEEEEESSCCCS
T ss_pred CeEEEEEcCcCCHHHHHhhcCceEEEEeCCCCEEEEEEEeeeCCCCeEEEEeCCCCCh
Confidence 45555432 367778888876433 33333 5699999999999999999876643
No 198
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=46.58 E-value=27 Score=34.26 Aligned_cols=63 Identities=11% Similarity=0.126 Sum_probs=46.1
Q ss_pred eEEEEeCCCCChHHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc
Q 003796 124 RTSVLQAPHGDLVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT 194 (795)
Q Consensus 124 Ritfie~~~~dl~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~ 194 (795)
.+.+|.||+.--...+.++..||.||+++.++.. .+ .....++..|+.+|.+.+..|++..+.
T Consensus 113 D~viiD~~~~~~~~~~~~~~~ad~vi~v~~~~~~-------~~-~~~~~~~~~l~~~~~~~~~vv~N~~~~ 175 (237)
T 1g3q_A 113 DFILIDCPAGLQLDAMSAMLSGEEALLVTNPEIS-------CL-TDTMKVGIVLKKAGLAILGFVLNRYGR 175 (237)
T ss_dssp SEEEEECCSSSSHHHHHHHTTCSEEEEEECSCHH-------HH-HHHHHHHHHHHHTTCEEEEEEEEEETS
T ss_pred CEEEEECCCCcCHHHHHHHHHCCeEEEEecCCcc-------cH-HHHHHHHHHHHhCCCceEEEEEecCCc
Confidence 5678888755446678889999999999988742 11 245678888888888665556787765
No 199
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=46.26 E-value=42 Score=32.79 Aligned_cols=75 Identities=11% Similarity=0.158 Sum_probs=48.7
Q ss_pred eEEEEeCCCC-ChHHHHHHHhhhceEEEeeeCCCccccccccccC-hHHHHHHHHHHhc-CCCceEEEeccCCcch-hhh
Q 003796 124 RTSVLQAPHG-DLVGCMEMAKVADLVAFVASASSFSEESMSYYID-SFGNQCLSVFRSL-GLPSTAVLIRDLPTDL-KKR 199 (795)
Q Consensus 124 Ritfie~~~~-dl~~~LD~aKvADlVll~idas~g~~~~~~~~fe-~eg~e~L~~l~aq-G~P~vigVl~~Ld~~~-Kk~ 199 (795)
.+.+|.||+. .-.....++..||.||+++.++. .+ .....++..|+.. +.+ +..|++..+... +-.
T Consensus 69 D~viiD~p~~~~~~~~~~~l~~aD~viiv~~~~~---------~~~~~~~~~~~~l~~~~~~~-~~vv~N~~~~~~~~~~ 138 (209)
T 3cwq_A 69 QNIVIDTQARPEDEDLEALADGCDLLVIPSTPDA---------LALDALMLTIETLQKLGNNR-FRILLTIIPPYPSKDG 138 (209)
T ss_dssp SEEEEEEECCCSSSHHHHHHHTSSEEEEEECSSH---------HHHHHHHHHHHHHHHTCSSS-EEEEECSBCCTTSCHH
T ss_pred CEEEEeCCCCcCcHHHHHHHHHCCEEEEEecCCc---------hhHHHHHHHHHHHHhccCCC-EEEEEEecCCccchHH
Confidence 5677888755 44566778899999999999874 22 2356677777773 665 555578777621 112
Q ss_pred HHHHHHHHh
Q 003796 200 KDLKKMCIS 208 (795)
Q Consensus 200 ~~~kK~lk~ 208 (795)
+++.+.++.
T Consensus 139 ~~~~~~l~~ 147 (209)
T 3cwq_A 139 DEARQLLTT 147 (209)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 345555554
No 200
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=45.90 E-value=25 Score=34.06 Aligned_cols=25 Identities=12% Similarity=0.173 Sum_probs=18.0
Q ss_pred CEEEEEecCCCccChhhHHHHHHHhh
Q 003796 79 PRVIVLFGLSASVNLNSVREDLLRQL 104 (795)
Q Consensus 79 P~iV~Vvg~~~~~~~~sl~~~lvk~~ 104 (795)
+.+|+|+|.++++.. +|++.|+..+
T Consensus 30 ~~~i~i~G~~g~GKT-Tl~~~l~~~~ 54 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKT-LLIERTIERI 54 (221)
T ss_dssp CEEEEEEECTTSCHH-HHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHH-HHHHHHHHHh
Confidence 467899999998875 6655556553
No 201
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=44.74 E-value=1.3e+02 Score=29.62 Aligned_cols=60 Identities=15% Similarity=0.211 Sum_probs=34.3
Q ss_pred eEEEEeCCCCChHH---------HHHHHhhhceEEEeeeCCCccccccccccChHHHH-----HHHHHHhcCCCceEEEe
Q 003796 124 RTSVLQAPHGDLVG---------CMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQ-----CLSVFRSLGLPSTAVLI 189 (795)
Q Consensus 124 Ritfie~~~~dl~~---------~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e-----~L~~l~aqG~P~vigVl 189 (795)
.+.|+.+| ..+.. ++.++.- |+||+++|++.+ .+...+. .+..+...++|- +.|+
T Consensus 110 d~iiiDtp-G~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~--------~~~~~~~~~~~~~~~~~~~~~~p~-~iv~ 178 (262)
T 1yrb_A 110 DYVLIDTP-GQMETFLFHEFGVRLMENLPY-PLVVYISDPEIL--------KKPNDYCFVRFFALLIDLRLGATT-IPAL 178 (262)
T ss_dssp SEEEEECC-SSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGC--------CSHHHHHHHHHHHHHHHHHHTSCE-EEEE
T ss_pred CEEEEeCC-CccchhhhhhhHHHHHHHHhh-ceEEeccchhhh--------cCHHHHHHHHHHHHHHhcccCCCe-EEEE
Confidence 78899998 54432 1223333 788899998753 2221111 223334457875 4678
Q ss_pred ccCCc
Q 003796 190 RDLPT 194 (795)
Q Consensus 190 ~~Ld~ 194 (795)
+..|.
T Consensus 179 NK~D~ 183 (262)
T 1yrb_A 179 NKVDL 183 (262)
T ss_dssp CCGGG
T ss_pred ecccc
Confidence 88775
No 202
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=44.33 E-value=37 Score=36.84 Aligned_cols=73 Identities=10% Similarity=-0.004 Sum_probs=43.8
Q ss_pred EEEEEecCCCccChhhHHHHHHHhhc------cCCCC--CcceEEEecCce---------------eeEEEEeCCCCCh-
Q 003796 80 RVIVLFGLSASVNLNSVREDLLRQLS------SEGTG--ALSSTVSSSKYR---------------LRTSVLQAPHGDL- 135 (795)
Q Consensus 80 ~iV~Vvg~~~~~~~~sl~~~lvk~~~------~~~~~--~g~~tv~~~r~k---------------~Ritfie~~~~dl- 135 (795)
.-|+|||+++.+.+ +|.+.|...-. .+... .|.+.+ +..+ ..++|+..| .-.
T Consensus 3 ~kI~IVG~pnvGKS-TL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~--~~~r~~~l~~~~~~~~~~~~~i~lvDtp-Gl~~ 78 (363)
T 1jal_A 3 FKCGIVGLPNVGKS-TLFNALTKAGIEAANYPFCTIEPNTGVVPM--PDPRLDALAEIVKPERILPTTMEFVDIA-GLVA 78 (363)
T ss_dssp CEEEEECCTTSSHH-HHHHHHHHTC------CCCCCCCCSSEEEC--CCHHHHHHHHHHCCSEEECCEEEEEECC-SCCT
T ss_pred CEEEEECCCCCCHH-HHHHHHHCCCCcccCCCCceECceEEEEec--CCcccceeeeeecccceeeeEEEEEECC-CCcc
Confidence 35899999998875 67443333110 00111 143333 2111 468899887 322
Q ss_pred ---------HHHHHHHhhhceEEEeeeCCC
Q 003796 136 ---------VGCMEMAKVADLVAFVASASS 156 (795)
Q Consensus 136 ---------~~~LD~aKvADlVll~idas~ 156 (795)
+..|...+-||.+|+|+|++.
T Consensus 79 ~a~~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 79 GASKGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp THHHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred cccccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 245677899999999999984
No 203
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=43.12 E-value=2.8e+02 Score=28.69 Aligned_cols=60 Identities=15% Similarity=0.057 Sum_probs=32.9
Q ss_pred eEEEEeCCCCCh--H--HHH------HHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCC
Q 003796 124 RTSVLQAPHGDL--V--GCM------EMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLP 193 (795)
Q Consensus 124 Ritfie~~~~dl--~--~~L------D~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld 193 (795)
.+.+|.||...- . .++ ..+-.+|.+||++|+..| ....+.+..+.. ++|-...|+|.+|
T Consensus 182 D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g----------~~~~~~~~~~~~-~~~i~gvVlnk~D 250 (297)
T 1j8m_F 182 EIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG----------QKAYDLASKFNQ-ASKIGTIIITKMD 250 (297)
T ss_dssp SEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG----------GGHHHHHHHHHH-TCTTEEEEEECGG
T ss_pred CEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCch----------HHHHHHHHHHHh-hCCCCEEEEeCCC
Confidence 467777764221 1 232 234568888888888743 122333443332 4554555678887
Q ss_pred c
Q 003796 194 T 194 (795)
Q Consensus 194 ~ 194 (795)
.
T Consensus 251 ~ 251 (297)
T 1j8m_F 251 G 251 (297)
T ss_dssp G
T ss_pred C
Confidence 6
No 204
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=42.83 E-value=57 Score=36.11 Aligned_cols=27 Identities=26% Similarity=0.389 Sum_probs=18.9
Q ss_pred CCCEEEEEecCCCccChhhHHHHHHHhh
Q 003796 77 SPPRVIVLFGLSASVNLNSVREDLLRQL 104 (795)
Q Consensus 77 ~pP~iV~Vvg~~~~~~~~sl~~~lvk~~ 104 (795)
++|.+|+|+|+++++.+ +++..|...+
T Consensus 97 ~~~~vI~ivG~~GvGKT-Tla~~La~~l 123 (432)
T 2v3c_C 97 KKQNVILLVGIQGSGKT-TTAAKLARYI 123 (432)
T ss_dssp SSCCCEEEECCSSSSTT-HHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHH-HHHHHHHHHH
Confidence 56889999999987775 3444445444
No 205
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=42.83 E-value=1.6e+02 Score=29.35 Aligned_cols=46 Identities=13% Similarity=0.088 Sum_probs=25.4
Q ss_pred hhceEEEeeeCCCccccccccccC---hHHHHHHHHHHhcCCCceEEEeccCCc
Q 003796 144 VADLVAFVASASSFSEESMSYYID---SFGNQCLSVFRSLGLPSTAVLIRDLPT 194 (795)
Q Consensus 144 vADlVll~idas~g~~~~~~~~fe---~eg~e~L~~l~aqG~P~vigVl~~Ld~ 194 (795)
=||.+|||+|++... + ..|+ .+-.+++......+.| ++.|++..|.
T Consensus 162 ~ad~vilV~D~t~~~--~--~s~~~~~~~l~~i~~~~~~~~~p-iilV~NK~Dl 210 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGM--N--RNFDDQLKFVSNLYNQLAKTKKP-IVVVLTKCDE 210 (255)
T ss_dssp ECCEEEEEEECBC--------CHHHHHHHHHHHHHHHHHTTCC-EEEEEECGGG
T ss_pred cCCEEEEEEECCCCc--h--hhHHHHHHHHHHHHHHhccCCCC-EEEEEEcccc
Confidence 389999999987410 0 1133 2333333333334555 5667787775
No 206
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=42.81 E-value=37 Score=35.27 Aligned_cols=62 Identities=15% Similarity=0.165 Sum_probs=45.3
Q ss_pred EEEEeCCCC-ChHHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc
Q 003796 125 TSVLQAPHG-DLVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT 194 (795)
Q Consensus 125 itfie~~~~-dl~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~ 194 (795)
+.+|.||+. .....+-++..||.||+++.+... =-....+.+..|+..|.+.+-.||+..+.
T Consensus 204 ~VIIDtpp~~~~~da~~l~~~aD~vllVv~~~~~--------~~~~~~~~~~~l~~~g~~~~GvVlN~v~~ 266 (286)
T 3la6_A 204 LVLIDTPPILAVTDAAIVGRHVGTTLMVARYAVN--------TLKEVETSLSRFEQNGIPVKGVILNSIFR 266 (286)
T ss_dssp EEEEECCCTTTCTHHHHHTTTCSEEEEEEETTTS--------BHHHHHHHHHHHHHTTCCCCEEEEEEECC
T ss_pred EEEEcCCCCcchHHHHHHHHHCCeEEEEEeCCCC--------cHHHHHHHHHHHHhCCCCEEEEEEcCccc
Confidence 677777742 334567778899999999998742 12356788899999997766666888876
No 207
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=42.81 E-value=38 Score=36.10 Aligned_cols=27 Identities=11% Similarity=0.037 Sum_probs=20.1
Q ss_pred CCCEEEEEecCCCccChhhHHHHHHHhh
Q 003796 77 SPPRVIVLFGLSASVNLNSVREDLLRQL 104 (795)
Q Consensus 77 ~pP~iV~Vvg~~~~~~~~sl~~~lvk~~ 104 (795)
.+..+|+|+|+++++++ +|++.|...+
T Consensus 53 ~~g~~v~i~G~~GaGKS-TLl~~l~g~~ 79 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKS-TTIDALGSLL 79 (337)
T ss_dssp CCSEEEEEECCTTSCHH-HHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHH-HHHHHHHHhh
Confidence 55789999999998875 6655555554
No 208
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=41.55 E-value=93 Score=29.41 Aligned_cols=108 Identities=11% Similarity=-0.046 Sum_probs=50.5
Q ss_pred CEEEEEecCCCccChhhHHHHHHHhhccCCC---CCc----ceEEEecCceeeEEEEeCCCCC--hHHHHH-HHhhhceE
Q 003796 79 PRVIVLFGLSASVNLNSVREDLLRQLSSEGT---GAL----SSTVSSSKYRLRTSVLQAPHGD--LVGCME-MAKVADLV 148 (795)
Q Consensus 79 P~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~---~~g----~~tv~~~r~k~Ritfie~~~~d--l~~~LD-~aKvADlV 148 (795)
.+-|+|||.++.+.. +|++.++........ ..| ..++......-.+.++...-.. ...+.. ..+.||.+
T Consensus 6 ~~kv~lvG~~~vGKS-sL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~~ 84 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKS-TLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAY 84 (192)
T ss_dssp EEEEEEECSTTSSHH-HHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSEE
T ss_pred eEEEEEECCCCCCHH-HHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCEE
Confidence 456999999998876 674333321100000 011 1233334323344444432110 011211 24668999
Q ss_pred EEeeeCCCccccccccccChHH---HHHHHHHHhcCCCceEEEeccCCc
Q 003796 149 AFVASASSFSEESMSYYIDSFG---NQCLSVFRSLGLPSTAVLIRDLPT 194 (795)
Q Consensus 149 ll~idas~g~~~~~~~~fe~eg---~e~L~~l~aqG~P~vigVl~~Ld~ 194 (795)
|+|+|.+.- ..|+... ..+.......|.| ++.|.+..|.
T Consensus 85 i~v~dv~~~------~s~~~~~~~~~~l~~~~~~~~~p-iilV~NK~Dl 126 (192)
T 2cjw_A 85 LIVYSITDR------ASFEKASELRIQLRRARQTEDIP-IILVGNKSDL 126 (192)
T ss_dssp EEEEETTCH------HHHHHHHHHHHHHHHHTTTSCCC-EEEEEECTTC
T ss_pred EEEEECCCH------HHHHHHHHHHHHHHHhhCCCCCe-EEEEEechhh
Confidence 999998731 2344322 1122221234666 5666777775
No 209
>3iz5_j 60S ribosomal protein L35A (L35AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_j
Probab=41.38 E-value=21 Score=32.30 Aligned_cols=63 Identities=17% Similarity=0.415 Sum_probs=42.0
Q ss_pred eeeEEEeec-CCChhhccccccceee----e-----cccc---cceeeCCCCCCceeEEEecccccc---ccEEEEecc
Q 003796 716 KLKAIVRYM-FHNPEDVRWFKPVEVW----T-----KCGR---RGRIKEPVGTHGAMKCVFNGILQQ---RDTVCMSLY 778 (795)
Q Consensus 716 K~tA~Ir~M-F~n~~dV~~Fk~a~L~----T-----ksGi---rG~IK~~lgt~G~fka~Fe~~i~~---~D~V~m~ly 778 (795)
-|||.||== =++.+|..||-|-.+- + .+.+ -|.|..|-|..|.+||.|...|-. ++.|.+-||
T Consensus 29 ~~taLlKIeGV~~~~~a~fylGKrvayvykak~~~~g~k~R~iwGKVtR~HGnsGvVrAkF~~nLP~kA~G~~VrVmLy 107 (111)
T 3iz5_j 29 ENTSLLQIEGVNTKEEVGWYAGKRIAYVYKAKTKSNDSTIRCIWGKVTRPHGNSGVVRAKFRSNLPPTSMGKKVRVFMY 107 (111)
T ss_dssp CCEEEEEESSCSTTHHHHTTSCCCCEECCCCCSSSCCCCSCCEECEEEEESSSSSCEEEECSSCCSTTCCSSCBCC---
T ss_pred CCeEEEEEcCcCCHHHHHhhcCcEEEEEEeccccCCCceEEEEEEEEEeeeCCCCEEEEEeCCCCChHHcCCEEEEEEe
Confidence 355555533 4678999999886552 1 1224 499999999999999999987743 444554454
No 210
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=41.02 E-value=74 Score=33.16 Aligned_cols=46 Identities=11% Similarity=0.162 Sum_probs=33.1
Q ss_pred HHhhhceEEEeeeCCCccccccccccCh-HHHHHHHHHHhcCCCceEEEeccCCc
Q 003796 141 MAKVADLVAFVASASSFSEESMSYYIDS-FGNQCLSVFRSLGLPSTAVLIRDLPT 194 (795)
Q Consensus 141 ~aKvADlVll~idas~g~~~~~~~~fe~-eg~e~L~~l~aqG~P~vigVl~~Ld~ 194 (795)
.++-||.||+|+|++.. .+.. .-..+|..+...|.|. +.|++..|.
T Consensus 76 ~~~naD~vliV~d~~~p-------~~s~~~l~~~l~~~~~~~~~~-ilV~NK~DL 122 (302)
T 2yv5_A 76 KVANVDRVIIVETLKMP-------EFNNYLLDNMLVVYEYFKVEP-VIVFNKIDL 122 (302)
T ss_dssp EEESCCEEEEEECSTTT-------TCCHHHHHHHHHHHHHTTCEE-EEEECCGGG
T ss_pred HHHhcCEEEEEEECCCC-------CCCHHHHHHHHHHHHhCCCCE-EEEEEcccC
Confidence 47889999999999842 1222 2457788888889885 567887775
No 211
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=39.04 E-value=1.4e+02 Score=29.40 Aligned_cols=102 Identities=8% Similarity=0.043 Sum_probs=55.0
Q ss_pred EEEEecCCCccChhhHHHHHHHhhccCC------CCCc----ceEEEecCceeeEEEEeCCC-CChHHHHH-HHhhhceE
Q 003796 81 VIVLFGLSASVNLNSVREDLLRQLSSEG------TGAL----SSTVSSSKYRLRTSVLQAPH-GDLVGCME-MAKVADLV 148 (795)
Q Consensus 81 iV~Vvg~~~~~~~~sl~~~lvk~~~~~~------~~~g----~~tv~~~r~k~Ritfie~~~-~dl~~~LD-~aKvADlV 148 (795)
=|+|||.++.+.. +| +..|.... .+.| ..++......-++.++..+- ....++.. ..+-||.+
T Consensus 15 KivlvGd~~VGKT-sL----i~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~ 89 (216)
T 4dkx_A 15 KLVFLGEQSVGKT-SL----ITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAA 89 (216)
T ss_dssp EEEEECSTTSSHH-HH----HHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEE
T ss_pred EEEEECcCCcCHH-HH----HHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEE
Confidence 3899999998876 77 44443221 1112 23444444455677776542 23344433 35789999
Q ss_pred EEeeeCCCccccccccccChHHHHHHHHHHhcCCC--ceEEEeccCCc
Q 003796 149 AFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLP--STAVLIRDLPT 194 (795)
Q Consensus 149 ll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P--~vigVl~~Ld~ 194 (795)
|+++|.+.- ..|+.-. +.+..++.+.-| .+|.|.+..|.
T Consensus 90 ilv~di~~~------~Sf~~i~-~~~~~i~~~~~~~~piilVgNK~Dl 130 (216)
T 4dkx_A 90 VVVYDITNV------NSFQQTT-KWIDDVRTERGSDVIIMLVGNKTDL 130 (216)
T ss_dssp EEEEETTCH------HHHHTHH-HHHHHHHHHHTTSSEEEEEEECTTC
T ss_pred EEEeecchh------HHHHHHH-HHHHHHHHhcCCCCeEEEEeeccch
Confidence 999998742 2344322 233333333222 24455677775
No 212
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=38.75 E-value=29 Score=38.21 Aligned_cols=74 Identities=14% Similarity=0.138 Sum_probs=43.1
Q ss_pred CCCCEEEEEecCCCccChhhHHHHHHHhhccCCCCC------------cceEEEecCc-------------eeeEEEEeC
Q 003796 76 ASPPRVIVLFGLSASVNLNSVREDLLRQLSSEGTGA------------LSSTVSSSKY-------------RLRTSVLQA 130 (795)
Q Consensus 76 ~~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~~------------g~~tv~~~r~-------------k~Ritfie~ 130 (795)
-..+.-|+|||+++.+.+ +| ++.+++..... |.+.+.-.+. ...++|+..
T Consensus 19 i~~~~kvgIVG~pnvGKS-TL----~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDt 93 (396)
T 2ohf_A 19 FGTSLKIGIVGLPNVGKS-TF----FNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDI 93 (396)
T ss_dssp SSSCCCEEEECCSSSSHH-HH----HHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEEC
T ss_pred ccCCCEEEEECCCCCCHH-HH----HHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEEC
Confidence 345667999999998875 67 55555432111 2222211010 124788877
Q ss_pred CCCCh----------HHHHHHHhhhceEEEeeeCC
Q 003796 131 PHGDL----------VGCMEMAKVADLVAFVASAS 155 (795)
Q Consensus 131 ~~~dl----------~~~LD~aKvADlVll~idas 155 (795)
| .-. +..+..++-||.||+|+|++
T Consensus 94 p-Gl~~~as~~~glg~~~l~~ir~aD~Il~VvD~~ 127 (396)
T 2ohf_A 94 A-GLVKGAHNGQGLGNAFLSHISACDGIFHLTRAF 127 (396)
T ss_dssp C-C-----------CCHHHHHHHTSSSEEEEEEC-
T ss_pred C-CcccccchhhHHHHHHHHHHHhcCeEEEEEecC
Confidence 6 322 25678888999999999987
No 213
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=36.07 E-value=57 Score=33.45 Aligned_cols=62 Identities=10% Similarity=0.156 Sum_probs=42.5
Q ss_pred eEEEEeCCCC-ChHHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEE-eccCCc
Q 003796 124 RTSVLQAPHG-DLVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVL-IRDLPT 194 (795)
Q Consensus 124 Ritfie~~~~-dl~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigV-l~~Ld~ 194 (795)
.+.+|.||+. ......-++..||.||+++.+... --....+++..|+..|.+ ++|| |+..+.
T Consensus 193 D~VIIDtpp~~~~~d~~~l~~~aD~vilVv~~~~~--------~~~~~~~~~~~l~~~~~~-~~GvVlN~~~~ 256 (271)
T 3bfv_A 193 NFVIIDTPPVNTVTDAQLFSKFTGNVVYVVNSENN--------NKDEVKKGKELIEATGAK-LLGVVLNRMPK 256 (271)
T ss_dssp SEEEEECCCTTTCSHHHHHHHHHCEEEEEEETTSC--------CHHHHHHHHHHHHTTTCE-EEEEEEEEECC
T ss_pred CEEEEeCCCCchHHHHHHHHHHCCEEEEEEeCCCC--------cHHHHHHHHHHHHhCCCC-EEEEEEeCCcC
Confidence 4677788742 334455677889999999988742 123467778888888875 4554 777776
No 214
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=33.93 E-value=80 Score=30.88 Aligned_cols=62 Identities=10% Similarity=0.016 Sum_probs=43.1
Q ss_pred eEEEEeCCCCChHHHHHHHhhhceEEEeeeCCCccccccccccC-hHHHHHHHHHHhcCC--CceEEEeccCCc
Q 003796 124 RTSVLQAPHGDLVGCMEMAKVADLVAFVASASSFSEESMSYYID-SFGNQCLSVFRSLGL--PSTAVLIRDLPT 194 (795)
Q Consensus 124 Ritfie~~~~dl~~~LD~aKvADlVll~idas~g~~~~~~~~fe-~eg~e~L~~l~aqG~--P~vigVl~~Ld~ 194 (795)
.+.+|.||+.--...+.++..||.||+++..+. +. .....++..|+..|. ..+..|++..+.
T Consensus 120 D~viiD~p~~~~~~~~~~l~~ad~viiv~~~~~---------~~~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~ 184 (245)
T 3ea0_A 120 DYIIVDFGASIDHVGVWVLEHLDELCIVTTPSL---------QSLRRAGQLLKLCKEFEKPISRIEIILNRADT 184 (245)
T ss_dssp SEEEEEEESSCCTTHHHHGGGCSEEEEEECSSH---------HHHHHHHHHHHHHHTCSSCCSCEEEEEESTTS
T ss_pred CEEEEeCCCCCchHHHHHHHHCCEEEEEecCcH---------HHHHHHHHHHHHHHHhCCCccceEEEEecCCC
Confidence 456777764333355677889999999998873 22 356788899998885 334445777765
No 215
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=32.77 E-value=53 Score=35.57 Aligned_cols=34 Identities=9% Similarity=0.019 Sum_probs=25.4
Q ss_pred eeEEEEeCCCC--------Ch-HHHHHHHhhhceEEEeeeCCC
Q 003796 123 LRTSVLQAPHG--------DL-VGCMEMAKVADLVAFVASASS 156 (795)
Q Consensus 123 ~Ritfie~~~~--------dl-~~~LD~aKvADlVll~idas~ 156 (795)
..++|+..|-- .+ +..+..++-||.+|+|+|++.
T Consensus 69 ~~i~lvDtpGl~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 69 THVEFVDIAGLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CEEEEEECCSCCCCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred ceEEEEECCCccccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 36888877621 12 467888899999999999984
No 216
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=32.72 E-value=1.4e+02 Score=29.84 Aligned_cols=75 Identities=15% Similarity=0.065 Sum_probs=47.0
Q ss_pred eEEEEeCCCCChHHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCC-ceEEEeccCCcchhhhHHH
Q 003796 124 RTSVLQAPHGDLVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLP-STAVLIRDLPTDLKKRKDL 202 (795)
Q Consensus 124 Ritfie~~~~dl~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P-~vigVl~~Ld~~~Kk~~~~ 202 (795)
.+.+|.||+.--.....+...||.||+++.++.. .+ .....++..|+..|.. ++..|++..+. .+-.+++
T Consensus 146 D~viiD~pp~~~~~~~~~l~~aD~vivv~~~~~~-------s~-~~~~~~~~~l~~~~~~~~~~vv~N~~~~-~~~~~~~ 216 (267)
T 3k9g_A 146 DYIVIDTNPSLDVTLKNALLCSDYVIIPMTAEKW-------AV-ESLDLFNFFVRKLNLFLPIFLIITRFKK-NRTHKTL 216 (267)
T ss_dssp SEEEEEECSSCSHHHHHHHTTCSEEEEEEESCTT-------HH-HHHHHHHHHHHTTTCCCCEEEEEEEECT-TCSCCHH
T ss_pred CEEEEECcCCccHHHHHHHHHCCeEEEEeCCChH-------HH-HHHHHHHHHHHHHhccCCEEEEEecccC-cchHHHH
Confidence 4677888754434456677889999999998742 12 2356788888888764 44555776643 1223445
Q ss_pred HHHHH
Q 003796 203 KKMCI 207 (795)
Q Consensus 203 kK~lk 207 (795)
.+.++
T Consensus 217 ~~~l~ 221 (267)
T 3k9g_A 217 FEILK 221 (267)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 55554
No 217
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=32.34 E-value=88 Score=32.51 Aligned_cols=63 Identities=6% Similarity=0.065 Sum_probs=42.8
Q ss_pred eEEEEeCCCC-ChHHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc
Q 003796 124 RTSVLQAPHG-DLVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT 194 (795)
Q Consensus 124 Ritfie~~~~-dl~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~ 194 (795)
.+.+|.||+. ......-++..||.||+++.+... --....+++..|+..|++-.-.||+..+.
T Consensus 215 D~VIIDtpp~~~~~d~~~l~~~ad~vilV~~~~~~--------~~~~~~~~~~~l~~~~~~~~GvVlN~~~~ 278 (299)
T 3cio_A 215 DLVIVDTPPMLAVSDAAVVGRSVGTSLLVARFGLN--------TAKEVSLSMQRLEQAGVNIKGAILNGVIK 278 (299)
T ss_dssp SEEEEECCCTTTCTHHHHHGGGCSEEEEEEETTTS--------CTTHHHHHHHHHHHTTCCCCCEEEEECCC
T ss_pred CEEEEcCCCCchhHHHHHHHHHCCEEEEEEcCCCC--------hHHHHHHHHHHHHhCCCCeEEEEEeCCcc
Confidence 3667888742 223444567889999999987742 22356788888888898755455787775
No 218
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=31.42 E-value=1.3e+02 Score=33.38 Aligned_cols=30 Identities=20% Similarity=0.249 Sum_probs=20.7
Q ss_pred CCCCEEEEEecCCCccChhhHHHHHHHhhcc
Q 003796 76 ASPPRVIVLFGLSASVNLNSVREDLLRQLSS 106 (795)
Q Consensus 76 ~~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~ 106 (795)
.++|.+|+++|+++++.+ +++..|...+..
T Consensus 94 ~~~~~vI~lvG~~GsGKT-Tt~~kLA~~l~~ 123 (433)
T 3kl4_A 94 TKLPFIIMLVGVQGSGKT-TTAGKLAYFYKK 123 (433)
T ss_dssp CSSSEEEEECCCTTSCHH-HHHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHH-HHHHHHHHHHHH
Confidence 357999999999997775 343444555544
No 219
>3izc_j 60S ribosomal protein RPL33 (L35AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_j 3u5e_f 3u5i_f 4b6a_f
Probab=30.87 E-value=23 Score=31.81 Aligned_cols=62 Identities=18% Similarity=0.404 Sum_probs=40.6
Q ss_pred eeEEEeec-CCChhhcccccccee----eecc---c-----ccceeeCCCCCCceeEEEecccccc---ccEEEEecc
Q 003796 717 LKAIVRYM-FHNPEDVRWFKPVEV----WTKC---G-----RRGRIKEPVGTHGAMKCVFNGILQQ---RDTVCMSLY 778 (795)
Q Consensus 717 ~tA~Ir~M-F~n~~dV~~Fk~a~L----~Tks---G-----irG~IK~~lgt~G~fka~Fe~~i~~---~D~V~m~ly 778 (795)
+||.||== =++.+|..||-|-.+ +++. | |-|.|..|-|..|.+||.|...|-. ++.|.+-||
T Consensus 26 ~taLlKIeGV~~~~~a~fylGKrvayvykak~~~~g~k~RviwGKVtR~HGnsGvVrAkF~~nLP~kA~G~~VrVmLy 103 (107)
T 3izc_j 26 NVSLIKIEGVATPQDAQFYLGKRIAYVYRASKEVRGSKIRVMWGKVTRTHGNSGVVRATFRNNLPAKTFGASVRIFLY 103 (107)
T ss_dssp CEEEEEESSCSTTHHHHTTCCCCCCCCCCCCSSSCCCCSCCCCCCEEECSSSSSCEEECCCSCCSTTCCSSCBCC---
T ss_pred CeEEEEEcCcCCHHHHHhhcCCEEEEEEecCcccCCceEEEEEEEEEeeeCCCCeEEEEeCCCCChHHcCCeEEEEEe
Confidence 45555532 367788999877543 2222 3 3499999999999999999987754 444554454
No 220
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=30.27 E-value=1.4e+02 Score=29.72 Aligned_cols=33 Identities=18% Similarity=0.059 Sum_probs=24.9
Q ss_pred eEEEEeCCCCChHHHHHHHhhhceEEEeeeCCC
Q 003796 124 RTSVLQAPHGDLVGCMEMAKVADLVAFVASASS 156 (795)
Q Consensus 124 Ritfie~~~~dl~~~LD~aKvADlVll~idas~ 156 (795)
.+.+|.||+.--.....++..||.||+++.++.
T Consensus 113 D~iiiD~pp~~~~~~~~~l~~aD~viiv~~~~~ 145 (257)
T 1wcv_1 113 DLVLLDAPPSLSPLTLNALAAAEGVVVPVQAEY 145 (257)
T ss_dssp SEEEEECCSSCCHHHHHHHHHCSEEEEEEESST
T ss_pred CEEEEeCCCCCCHHHHHHHHHCCeEEEEecCch
Confidence 577888985433345677789999999999874
No 221
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=28.87 E-value=1.7e+02 Score=29.59 Aligned_cols=76 Identities=8% Similarity=-0.135 Sum_probs=49.5
Q ss_pred HHHHHHHhhhce-EEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchhhhHHHHHHHHhhccccc
Q 003796 136 VGCMEMAKVADL-VAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLKKRKDLKKMCISSLTSEF 214 (795)
Q Consensus 136 ~~~LD~aKvADl-Vll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~~~Kk~~~~kK~lk~~f~~ef 214 (795)
..++|+|+..+. ||||+++.-| .+ ..+..-+..|+..|++ .=.|++..+.+..-...++-.|.+++.++
T Consensus 151 ~~~adlA~~l~~pVILV~~~~lg-------~i-~~~~lt~~~l~~~g~~-~GvIlN~v~~~~~~~~~~~p~le~~~~~~- 220 (242)
T 3qxc_A 151 ENMLDFALKLKAKMLLISHDNLG-------LI-NDCLLNDFLLKSHQLD-YKIAINLKGNNTAFHSISLPYIELFNTRS- 220 (242)
T ss_dssp CBHHHHHHHHTCEEEEEECCSTT-------HH-HHHHHHHHHHHTSSSC-EEEEECCCTTCCHHHHHTHHHHHHHHHHC-
T ss_pred chHHHHHHHcCCCEEEEEcCCCc-------HH-HHHHHHHHHHHhCCCC-EEEEEeCCCCccchhhhhHHHHHHhcCcc-
Confidence 467888887776 8888888754 12 2456666777889999 44447888762122334677777777766
Q ss_pred CCCCeeEEe
Q 003796 215 PEDCKFYAA 223 (795)
Q Consensus 215 ~~~~Klf~l 223 (795)
...++.+
T Consensus 221 --~~~~~~~ 227 (242)
T 3qxc_A 221 --NNPIVIF 227 (242)
T ss_dssp --SSCCEEG
T ss_pred --cCCceec
Confidence 3455554
No 222
>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}
Probab=28.85 E-value=1e+02 Score=30.18 Aligned_cols=57 Identities=7% Similarity=0.085 Sum_probs=45.5
Q ss_pred eeEEEEeCCCCChHHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEE
Q 003796 123 LRTSVLQAPHGDLVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVL 188 (795)
Q Consensus 123 ~Ritfie~~~~dl~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigV 188 (795)
.++.++.++..|..++-.+++-+|+|+...... .++..+..+|..++.+|..++|.+
T Consensus 67 ~~~~~~~~Dl~d~~~~~~~~~~~D~vv~~a~~~---------~~~~~~~~~~~~~~~~~~~~iV~i 123 (236)
T 3qvo_A 67 TNSQIIMGDVLNHAALKQAMQGQDIVYANLTGE---------DLDIQANSVIAAMKACDVKRLIFV 123 (236)
T ss_dssp TTEEEEECCTTCHHHHHHHHTTCSEEEEECCST---------THHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCcEEEEecCCCHHHHHHHhcCCCEEEEcCCCC---------chhHHHHHHHHHHHHcCCCEEEEE
Confidence 368889998888888888888889988665332 256678899999999999888766
No 223
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=28.56 E-value=1.5e+02 Score=27.89 Aligned_cols=104 Identities=9% Similarity=0.019 Sum_probs=53.0
Q ss_pred CEEEEEecCCCccChhhHHHHHHHhhccCCCC------Cc----ceEEEecCceeeEEEEeCCC-CChHH-HHHHHhhhc
Q 003796 79 PRVIVLFGLSASVNLNSVREDLLRQLSSEGTG------AL----SSTVSSSKYRLRTSVLQAPH-GDLVG-CMEMAKVAD 146 (795)
Q Consensus 79 P~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~------~g----~~tv~~~r~k~Ritfie~~~-~dl~~-~LD~aKvAD 146 (795)
.+.|+|+|++++++. +| ++.|+..... .| .-++......-.+.++..+. ....+ +-...+-||
T Consensus 29 ~~kv~lvG~~g~GKS-TL----l~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~ 103 (191)
T 1oix_A 29 LFKVVLIGDSGVGKS-NL----LSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAV 103 (191)
T ss_dssp EEEEEEEECTTSSHH-HH----HHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCC
T ss_pred ceEEEEECcCCCCHH-HH----HHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCC
Confidence 467999999998886 77 5544432211 11 12233333233444555431 11222 223456789
Q ss_pred eEEEeeeCCCccccccccccChHHHHHHHHHHhcC--CCceEEEeccCCc
Q 003796 147 LVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLG--LPSTAVLIRDLPT 194 (795)
Q Consensus 147 lVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG--~P~vigVl~~Ld~ 194 (795)
.+|+++|.+.. ..|+. -..++..+.... -..++.|++.+|.
T Consensus 104 ~~i~v~d~~~~------~s~~~-~~~~~~~~~~~~~~~~~i~~v~nK~Dl 146 (191)
T 1oix_A 104 GALLVYDIAKH------LTYEN-VERWLKELRDHADSNIVIMLVGNKSDL 146 (191)
T ss_dssp EEEEEEETTCH------HHHHT-HHHHHHHHHHHSCTTCEEEEEEECGGG
T ss_pred EEEEEEECcCH------HHHHH-HHHHHHHHHHhcCCCCcEEEEEECccc
Confidence 99999998742 11221 112344343322 2246667777775
No 224
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=28.54 E-value=1.9e+02 Score=26.57 Aligned_cols=92 Identities=10% Similarity=0.030 Sum_probs=46.6
Q ss_pred CCEEEEEecCCCccChhhHHHHHHHhhccCCCCCcceEEEecCceeeEEEEeCCCCChHHHHHHHhhhceEEEeeeCCCc
Q 003796 78 PPRVIVLFGLSASVNLNSVREDLLRQLSSEGTGALSSTVSSSKYRLRTSVLQAPHGDLVGCMEMAKVADLVAFVASASSF 157 (795)
Q Consensus 78 pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~~~g~~tv~~~r~k~Ritfie~~~~dl~~~LD~aKvADlVll~idas~g 157 (795)
+..+++++|++++++. .|++.+...+.. .| .+..++... ++... +. +.+.=||++|--..
T Consensus 35 ~g~~~~l~G~~G~GKT-tL~~~i~~~~~~----~g----------~~~~~~~~~--~~~~~-~~--~~~~~lLilDE~~~ 94 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKS-HLLQAWVAQALE----AG----------KNAAYIDAA--SMPLT-DA--AFEAEYLAVDQVEK 94 (149)
T ss_dssp CCSEEEEESSSTTTTC-HHHHHHHHHHHT----TT----------CCEEEEETT--TSCCC-GG--GGGCSEEEEESTTC
T ss_pred CCCEEEEECCCCCCHH-HHHHHHHHHHHh----cC----------CcEEEEcHH--HhhHH-HH--HhCCCEEEEeCccc
Confidence 3456889999998875 554444555432 12 112223221 11100 11 22334566775322
Q ss_pred cccccccccChHHHHHHHHHHhcCCCceEEEeccCCc
Q 003796 158 SEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT 194 (795)
Q Consensus 158 ~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~ 194 (795)
... .. ...-+++|+.+..+|.+ ++.+.+|.++
T Consensus 95 ~~~---~~-~~~l~~li~~~~~~g~~-~iiits~~~p 126 (149)
T 2kjq_A 95 LGN---EE-QALLFSIFNRFRNSGKG-FLLLGSEYTP 126 (149)
T ss_dssp CCS---HH-HHHHHHHHHHHHHHTCC-EEEEEESSCT
T ss_pred cCh---HH-HHHHHHHHHHHHHcCCc-EEEEECCCCH
Confidence 100 01 34567888888889977 3444567654
No 225
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=28.25 E-value=1.6e+02 Score=29.93 Aligned_cols=61 Identities=13% Similarity=-0.009 Sum_probs=38.0
Q ss_pred eEEEEeCCCCChHHHHHHHhhhceEEEeeeCCCccccccccccChH-HHHHHHHHHh------cCCCceEEE-eccCCc
Q 003796 124 RTSVLQAPHGDLVGCMEMAKVADLVAFVASASSFSEESMSYYIDSF-GNQCLSVFRS------LGLPSTAVL-IRDLPT 194 (795)
Q Consensus 124 Ritfie~~~~dl~~~LD~aKvADlVll~idas~g~~~~~~~~fe~e-g~e~L~~l~a------qG~P~vigV-l~~Ld~ 194 (795)
.+.+|.||+.--.....+...||.||+++.++. +... ...++..|+. .+++ ++|| ++..+.
T Consensus 156 D~IiiD~pp~~~~~~~~~l~~aD~viiv~~~~~---------~s~~~~~~~~~~l~~~~~~~~~~~~-~~gvv~n~~~~ 224 (298)
T 2oze_A 156 DLIIIDTVPTPSVYTNNAIVASDYVMIPLQAEE---------ESTNNIQNYISYLIDLQEQFNPGLD-MIGFVPYLVDT 224 (298)
T ss_dssp SEEEEEECSSCSHHHHHHHHHCSEEEEEECGGG---------CCHHHHHHHHHHHHHHHHHHCTTCE-EEEEEEEESCT
T ss_pred CEEEEECCCCccHHHHHHHHHCCeEEEEecCcH---------HHHHHHHHHHHHHHHHHHHhCCCCe-EEEEEEEEECC
Confidence 567888885433334556668999999998874 3333 3445555544 2544 4554 677775
No 226
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=25.79 E-value=3e+02 Score=30.24 Aligned_cols=28 Identities=18% Similarity=0.162 Sum_probs=19.2
Q ss_pred CCEEEEEecCCCccChhhHHHHHHHhhcc
Q 003796 78 PPRVIVLFGLSASVNLNSVREDLLRQLSS 106 (795)
Q Consensus 78 pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~ 106 (795)
+|.+|+|+|+++++.+ +++..|...+..
T Consensus 97 ~~~vi~i~G~~GsGKT-T~~~~LA~~l~~ 124 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKT-TTAAKLALYYKG 124 (425)
T ss_dssp SSEEEEEECCTTSSHH-HHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHH-HHHHHHHHHHHH
Confidence 7999999999987765 343344555543
No 227
>3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii}
Probab=25.56 E-value=53 Score=29.03 Aligned_cols=45 Identities=18% Similarity=0.240 Sum_probs=34.3
Q ss_pred eeecccccceeeCCC--CCCceeEEE-ecc----ccccccEEEEecceeecc
Q 003796 739 VWTKCGRRGRIKEPV--GTHGAMKCV-FNG----ILQQRDTVCMSLYKRAYP 783 (795)
Q Consensus 739 L~TksGirG~IK~~l--gt~G~fka~-Fe~----~i~~~D~V~m~lykrv~P 783 (795)
+.++.|..|++.+-. -.-|.+|+| |++ .+..+|+|.++.|.|++-
T Consensus 32 ~~~~~G~~~~v~~~~l~D~TG~IrvtlW~~~a~~~l~~Gdvv~i~g~vk~~~ 83 (105)
T 3dm3_A 32 FKRADGSIGKLKSFIVRDETGSIRVTLWDNLTDIDVGRGDYVRVRGYIREGY 83 (105)
T ss_dssp EECTTSCEEEEEEEEEEETTEEEEEEEEGGGGGSCCCTTCEEEEEEEEEECT
T ss_pred EEcCCCCeeEEEEEEEECCCCcEEEEEECcccccccCCCCEEEEEEEEEEcc
Confidence 345677777777654 245799998 777 688999999999998863
No 228
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=25.28 E-value=3.8e+02 Score=30.79 Aligned_cols=128 Identities=19% Similarity=0.189 Sum_probs=77.6
Q ss_pred CCCCCCcEEEEEEecCchhHHhhhccccCCCcEEEEe--c-ccccceeeEEEEEEEecCCCcccCCCCCeEEEEeeeeee
Q 003796 553 DSVPASLYVRLHIKEVPAGIAHRLCEMAERSPLIASG--L-LQHESKMSVLHFSVKKHDTYDAPIKAKEELIFHVGFRQF 629 (795)
Q Consensus 553 ~g~~~G~yVri~i~~vp~~~~~~~~~~~~~~Plil~g--L-l~~E~k~svv~~~ikrh~~~~~~lKSkdpLi~s~GwRRF 629 (795)
+.+.||..|.|.|+++...-+. +=-+|+. - .+.....=-.++.+- +++.||+...+++++||-++-
T Consensus 466 ~~A~aGd~v~l~l~~~~~~di~--------rGdvl~~~~~~~~~~~~~f~a~v~~l---~~~~~l~~g~~~~l~~~t~~~ 534 (611)
T 3izq_1 466 DVAIKGDFVTLKLRKAYPEDIQ--------NGDLAASVDYSSIHSAQCFVLELTTF---DMNRPLLPGTPFILFIGVKEQ 534 (611)
T ss_dssp CCEETTCEEEEEESSCCTTSCC--------TTCEEBCSTTCSCCCBSCEEEEEEEC---SCSSCBCTTEEEEEESSSCEE
T ss_pred ceecCCCcceEEeeeccHhhCc--------ceEEccCCCCCCCceeeEEEEEEEEE---CCCCCCCCCCEEEEEECCeEe
Confidence 5678999999999987543221 2223332 1 223333223333332 247899999999999999887
Q ss_pred eeeee--eccCCCCCCce-EEecccCCCceEEEEEEe-----ecCCCC------ccEEEEEeCCCCCCCeEEEEeEEecc
Q 003796 630 VARPI--FSSDNMNSDKH-KMERFLHAGCFSVASIYA-----PICFPP------LPLIVLKSADGGVAPAVAAVGSLRSI 695 (795)
Q Consensus 630 q~~Pi--fS~~~~~~~r~-k~~ky~~~~~~~~Atfyg-----Pi~~~~------t~vl~f~~~~~~~~~ri~atG~vl~~ 695 (795)
.+.-. -+.-+.+.... .--+++..|..+++.+-- |+++-+ +|-++++.. -+.+|.|.|+.+
T Consensus 535 ~~~v~~l~~~~d~~t~~~~~~~~~l~~~d~a~v~~~~~~~~~pi~~e~~~~~~~~grf~lr~~-----~~Tva~G~i~~v 609 (611)
T 3izq_1 535 PARIKRLISFIDKGNTASKKKIRHLGSKQRAFVEIELIEVKRWIPLLTAHENDRLGRVVLRKD-----GRTIAAGKISEI 609 (611)
T ss_dssp EEEEEEEEESSSSCCCBCTTCSCSSSSCCSEEEEEEESSCSSCBCCCCTTTCHHHHEEEEESS-----SSEEEEEEEEEE
T ss_pred eEEeeeeeeeecccccccccCccccCCCCEEEEEEEECCCCCceEEeecccCCCCCcEEEEeC-----CCEEEEEEEEEe
Confidence 65432 22213332222 112488899888888765 876544 344444432 268999999987
Q ss_pred C
Q 003796 696 D 696 (795)
Q Consensus 696 d 696 (795)
+
T Consensus 610 ~ 610 (611)
T 3izq_1 610 T 610 (611)
T ss_dssp C
T ss_pred c
Confidence 6
No 229
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=23.07 E-value=6.6e+02 Score=26.81 Aligned_cols=65 Identities=14% Similarity=0.216 Sum_probs=44.3
Q ss_pred ccCCCCCeEEEEeeeeeeeeeeeeccCCCCCCceEEecccCCCceEEEEEEeecCCCCccEEEEEeCCCCCCCeEEEEeE
Q 003796 612 APIKAKEELIFHVGFRQFVARPIFSSDNMNSDKHKMERFLHAGCFSVASIYAPICFPPLPLIVLKSADGGVAPAVAAVGS 691 (795)
Q Consensus 612 ~~lKSkdpLi~s~GwRRFq~~PifS~~~~~~~r~k~~ky~~~~~~~~AtfygPi~~~~t~vl~f~~~~~~~~~ri~atG~ 691 (795)
.||+...++.|++|-.+-.+.-.. . + . ..|...+--|+++-+---++++.... ...|++|+|.
T Consensus 343 ~~l~~g~~~~~~~~t~~~~~~v~~-~-~--~------------~~~~~~~~~p~~~~~~~~~~~~~~~~-~~~r~ig~G~ 405 (408)
T 1s0u_A 343 EPLRTGEVLMLNIGTATTAGVITS-A-R--G------------DIADIKLKLPICAEIGDRVAISRRVG-SRWRLIGYGT 405 (408)
T ss_dssp CCCCTTCEEEEEETTEEEEEEEEE-E-E--T------------TEEEEEEEEEEECCTTCEEEEEEECS-SSEEEEEEEE
T ss_pred cCCCCCCEEEEEEcCCEEEEEEEE-e-c--C------------CEEEEEECCcEEecCCCEEEEEEecC-CCeEEEEEEE
Confidence 799999999999997665543332 1 1 1 25566777898776544445554322 5799999999
Q ss_pred Ee
Q 003796 692 LR 693 (795)
Q Consensus 692 vl 693 (795)
|.
T Consensus 406 i~ 407 (408)
T 1s0u_A 406 IE 407 (408)
T ss_dssp EC
T ss_pred Ec
Confidence 86
No 230
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=23.06 E-value=89 Score=34.41 Aligned_cols=68 Identities=12% Similarity=0.171 Sum_probs=38.7
Q ss_pred hceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCc-chhhhHHHHHHHHhhcccccCCCCeeEEe
Q 003796 145 ADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPT-DLKKRKDLKKMCISSLTSEFPEDCKFYAA 223 (795)
Q Consensus 145 ADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~-~~Kk~~~~kK~lk~~f~~ef~~~~Klf~l 223 (795)
+|+||+++..+. .+|+....++|..|.. |.| +|.|+++.|. ........++.++..+... +..+|..
T Consensus 139 ~~vlL~ldePt~-------~~L~~~d~~~lk~L~~-~v~-iIlVinK~Dll~~~ev~~~k~~i~~~~~~~---~i~~~~~ 206 (418)
T 2qag_C 139 VQCCLYFIAPSG-------HGLKPLDIEFMKRLHE-KVN-IIPLIAKADTLTPEECQQFKKQIMKEIQEH---KIKIYEF 206 (418)
T ss_dssp CCEEEEECCC-C-------CSCCHHHHHHHHHHTT-TSE-EEEEEESTTSSCHHHHHHHHHHHHHHHHHH---TCCCCCC
T ss_pred eeEEEEEecCcc-------cCCCHHHHHHHHHHhc-cCc-EEEEEEcccCccHHHHHHHHHHHHHHHHHc---CCeEEeC
Confidence 345666666541 2377766788888864 654 7888999985 1122233344455444332 4555555
Q ss_pred C
Q 003796 224 D 224 (795)
Q Consensus 224 ~ 224 (795)
+
T Consensus 207 s 207 (418)
T 2qag_C 207 P 207 (418)
T ss_dssp C
T ss_pred C
Confidence 5
No 231
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=23.03 E-value=77 Score=31.33 Aligned_cols=63 Identities=16% Similarity=0.130 Sum_probs=42.2
Q ss_pred eEEEEeCCCCChHHHHHHHhhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCC-------CceEEE-eccCCc
Q 003796 124 RTSVLQAPHGDLVGCMEMAKVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGL-------PSTAVL-IRDLPT 194 (795)
Q Consensus 124 Ritfie~~~~dl~~~LD~aKvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~-------P~vigV-l~~Ld~ 194 (795)
.+.+|.||+.--.....++..||.||+++.++.. ==.....++..|+.++. +..+++ ++..+.
T Consensus 115 D~viiD~p~~~~~~~~~~l~~ad~vi~v~~~~~~--------s~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~N~~~~ 185 (260)
T 3q9l_A 115 EFIVCDSPAGIETGALMALYFADEAIITTNPEVS--------SVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNP 185 (260)
T ss_dssp SEEEEECCSSSSHHHHHHHHTCSEEEEEECSSHH--------HHHHHHHHHHHHTTSSHHHHTTCSCCEEEEEEEEECH
T ss_pred CEEEEcCCCCCCHHHHHHHHhCCEEEEEecCChh--------HHHHHHHHHHHHHHhccccccccCCcceEEEEecCCc
Confidence 5678888754444677788899999999998742 01245667888877763 234555 666654
No 232
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=22.97 E-value=97 Score=33.86 Aligned_cols=76 Identities=11% Similarity=0.112 Sum_probs=44.5
Q ss_pred CCCCCEEEEEecCCCccChhhHHHHHHHhhccCCC-----------C--CcceEEEecCc---------e----eeEEEE
Q 003796 75 IASPPRVIVLFGLSASVNLNSVREDLLRQLSSEGT-----------G--ALSSTVSSSKY---------R----LRTSVL 128 (795)
Q Consensus 75 ~~~pP~iV~Vvg~~~~~~~~sl~~~lvk~~~~~~~-----------~--~g~~tv~~~r~---------k----~Ritfi 128 (795)
.-.....|++||+++.+.+ +| ++.+++... . .|.+++.-.++ + ..+.|+
T Consensus 16 ~v~~g~~vgiVG~pnaGKS-TL----~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lv 90 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKS-TF----FRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVF 90 (392)
T ss_dssp SSSSCCEEEEEECSSSSHH-HH----HHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEE
T ss_pred cccCCCEEEEECCCCCCHH-HH----HHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEE
Confidence 4455778999999998876 67 555544322 1 14444431111 0 235666
Q ss_pred eCCC--------CCh-HHHHHHHhhhceEEEeeeCC
Q 003796 129 QAPH--------GDL-VGCMEMAKVADLVAFVASAS 155 (795)
Q Consensus 129 e~~~--------~dl-~~~LD~aKvADlVll~idas 155 (795)
..+- ..| +..+...+-+|.+++++|++
T Consensus 91 D~pGl~~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~ 126 (392)
T 1ni3_A 91 DIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAF 126 (392)
T ss_dssp CTGGGCCCCCSSSSSCHHHHHHHTTCSEEEEEEECC
T ss_pred eccccccCCcHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5541 012 35667777888888888886
No 233
>3rhi_A DNA-binding protein HU; structural genomics, center for structural genom infectious diseases, csgid; 2.48A {Bacillus anthracis} SCOP: a.55.1.1 PDB: 1hue_A 1huu_A
Probab=20.85 E-value=26 Score=30.26 Aligned_cols=20 Identities=25% Similarity=0.501 Sum_probs=16.8
Q ss_pred CCCCCeEEeCCCCceeecee
Q 003796 283 LSVNQLVHISGAGDFQLGKI 302 (795)
Q Consensus 283 l~~n~lVHIpG~GDfqi~~I 302 (795)
|..|..|+|+|+|-|.+..-
T Consensus 39 L~~g~~V~l~gfG~F~v~~r 58 (93)
T 3rhi_A 39 LAAGEKVQLIGFGTFEVRER 58 (93)
T ss_dssp HHTTCCEEETTTEEEEEEEE
T ss_pred HhCCCEEEEcCCEEEEEEEE
Confidence 55677899999999999763
No 234
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=20.20 E-value=1.7e+02 Score=31.35 Aligned_cols=96 Identities=8% Similarity=-0.068 Sum_probs=50.8
Q ss_pred CCCChHHHHHHH-hhhceEEEeeeCCCccccccccccChHHHHHHHHHHhcCCCceEEEeccCCcchh--hhHHHHHHHH
Q 003796 131 PHGDLVGCMEMA-KVADLVAFVASASSFSEESMSYYIDSFGNQCLSVFRSLGLPSTAVLIRDLPTDLK--KRKDLKKMCI 207 (795)
Q Consensus 131 ~~~dl~~~LD~a-KvADlVll~idas~g~~~~~~~~fe~eg~e~L~~l~aqG~P~vigVl~~Ld~~~K--k~~~~kK~lk 207 (795)
+..++.++|... .-+|+||+|+|++.. + ..+..+-.++ + .+.| ++.|++..|.-.+ ....+++.++
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~-~----~s~~~~l~~~---l--~~~p-iilV~NK~DLl~~~~~~~~~~~~l~ 125 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDF-N----GSFIPGLPRF---A--ADNP-ILLVGNKADLLPRSVKYPKLLRWMR 125 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCS-G----GGCCSSHHHH---C--TTSC-EEEEEECGGGSCTTCCHHHHHHHHH
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCC-C----CchhhHHHHH---h--CCCC-EEEEEEChhcCCCccCHHHHHHHHH
Confidence 336788888766 667899999999842 0 1122222222 2 2444 6677887664112 1334555555
Q ss_pred hhcccccCCCCeeEEeCCH--HHHHHHHHHHh
Q 003796 208 SSLTSEFPEDCKFYAADTK--DELHKFLWLFK 237 (795)
Q Consensus 208 ~~f~~ef~~~~Klf~l~~~--~E~~nL~R~Is 237 (795)
.++...=.....+|.+|.. ..+..|...|.
T Consensus 126 ~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~I~ 157 (369)
T 3ec1_A 126 RMAEELGLCPVDVCLVSAAKGIGMAKVMEAIN 157 (369)
T ss_dssp HHHHTTTCCCSEEEECBTTTTBTHHHHHHHHH
T ss_pred HHHHHcCCCcccEEEEECCCCCCHHHHHHHHH
Confidence 5554321112478888842 23444554443
Done!