Query 003797
Match_columns 795
No_of_seqs 313 out of 2614
Neff 5.6
Searched_HMMs 46136
Date Thu Mar 28 12:12:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003797.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003797hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00070 aconitate hydratase 100.0 5E-236 1E-240 2038.8 69.5 795 1-795 142-936 (936)
2 PTZ00092 aconitate hydratase-l 100.0 9E-234 2E-238 2017.4 67.7 789 1-795 110-898 (898)
3 KOG0452 RNA-binding translatio 100.0 2E-235 5E-240 1895.2 42.9 790 1-793 103-892 (892)
4 TIGR01341 aconitase_1 aconitat 100.0 9E-232 2E-236 1997.0 67.9 782 1-793 86-876 (876)
5 PRK12881 acnA aconitate hydrat 100.0 1E-230 3E-235 1993.2 67.5 779 1-794 103-889 (889)
6 PRK09277 aconitate hydratase; 100.0 3E-230 7E-235 1985.9 68.9 778 1-795 104-888 (888)
7 TIGR02333 2met_isocit_dHY 2-me 100.0 3E-226 6E-231 1944.4 67.2 757 1-794 93-858 (858)
8 COG1048 AcnA Aconitase A [Ener 100.0 1E-223 3E-228 1898.0 61.5 763 1-794 95-861 (861)
9 TIGR01340 aconitase_mito aconi 100.0 1E-167 3E-172 1456.4 55.5 657 4-788 72-745 (745)
10 PRK07229 aconitate hydratase; 100.0 7E-156 1E-160 1352.2 52.6 600 3-793 44-645 (646)
11 TIGR01342 acon_putative aconit 100.0 2E-154 4E-159 1337.9 50.6 607 4-795 42-655 (658)
12 TIGR00139 h_aconitase homoacon 100.0 3E-141 6E-146 1225.0 50.1 623 5-792 48-712 (712)
13 PRK11413 putative hydratase; P 100.0 7E-139 2E-143 1210.3 48.9 643 4-791 74-751 (751)
14 KOG0453 Aconitase/homoaconitas 100.0 3E-132 7E-137 1095.0 42.9 665 5-790 104-774 (778)
15 cd01586 AcnA_IRP Aconitase A c 100.0 7E-124 1E-128 1019.2 35.1 382 1-467 19-404 (404)
16 TIGR00170 leuC 3-isopropylmala 100.0 4E-115 8E-120 974.9 37.7 414 3-468 42-460 (465)
17 cd01584 AcnA_Mitochondrial Aco 100.0 2E-114 5E-119 954.2 36.8 395 4-467 15-412 (412)
18 PRK12466 isopropylmalate isome 100.0 2E-114 5E-119 969.8 37.4 413 4-468 44-462 (471)
19 PRK05478 isopropylmalate isome 100.0 6E-114 1E-118 966.8 37.8 414 3-468 42-460 (466)
20 PF00330 Aconitase: Aconitase 100.0 7E-114 1E-118 969.1 31.4 418 4-465 43-465 (465)
21 cd01583 IPMI 3-isopropylmalate 100.0 7E-113 2E-117 936.5 37.4 367 3-467 14-382 (382)
22 cd01585 AcnA_Bact Aconitase ca 100.0 1E-111 3E-116 924.2 36.0 365 3-467 15-380 (380)
23 COG0065 LeuC 3-isopropylmalate 100.0 1E-110 3E-115 897.2 33.9 372 3-468 44-417 (423)
24 TIGR01343 hacA_fam homoaconita 100.0 5E-110 1E-114 919.8 36.4 368 3-468 40-409 (412)
25 TIGR02086 IPMI_arch 3-isopropy 100.0 2E-109 4E-114 915.3 35.3 367 3-468 41-408 (412)
26 PRK00402 3-isopropylmalate deh 100.0 4E-109 8E-114 914.2 36.5 368 3-468 43-412 (418)
27 TIGR02083 LEU2 3-isopropylmala 100.0 1E-108 2E-113 908.6 37.3 371 3-468 42-414 (419)
28 cd01582 Homoaconitase Homoacon 100.0 2E-103 3E-108 854.0 34.5 347 5-467 15-363 (363)
29 cd01581 AcnB Aconitate hydrata 100.0 6E-101 1E-105 850.4 33.6 367 3-467 40-436 (436)
30 cd01351 Aconitase Aconitase ca 100.0 7.7E-98 2E-102 824.3 36.1 375 3-467 14-389 (389)
31 PRK09238 bifunctional aconitat 100.0 2.5E-93 5.4E-98 829.3 35.6 370 2-468 411-810 (835)
32 TIGR00117 acnB aconitate hydra 100.0 3.3E-92 7.1E-97 817.4 37.2 369 2-468 412-810 (844)
33 PLN00094 aconitate hydratase 2 100.0 4.2E-90 9.2E-95 797.2 36.4 370 2-468 485-884 (938)
34 cd01580 AcnA_IRP_Swivel Aconit 100.0 1.3E-64 2.7E-69 491.1 12.2 170 571-740 1-170 (171)
35 COG1049 AcnB Aconitase B [Ener 100.0 3.3E-47 7.2E-52 420.4 21.5 335 65-502 458-822 (852)
36 KOG0454 3-isopropylmalate dehy 100.0 2.1E-46 4.5E-51 403.0 17.7 400 237-742 14-420 (502)
37 cd01578 AcnA_Mitochon_Swivel M 100.0 5.7E-40 1.2E-44 315.1 9.1 141 571-740 1-141 (149)
38 COG0066 LeuD 3-isopropylmalate 100.0 2.9E-38 6.3E-43 312.5 10.1 165 569-793 11-180 (191)
39 PRK00439 leuD 3-isopropylmalat 100.0 7E-38 1.5E-42 309.2 11.4 156 569-792 4-159 (163)
40 TIGR02084 leud 3-isopropylmala 100.0 8.6E-38 1.9E-42 305.8 10.7 154 569-790 3-156 (156)
41 PRK14023 homoaconitate hydrata 100.0 1.4E-37 3E-42 307.4 11.8 154 569-791 4-157 (166)
42 TIGR02087 LEUD_arch 3-isopropy 100.0 1.1E-37 2.3E-42 304.7 10.3 151 570-791 4-154 (154)
43 PLN00072 3-isopropylmalate iso 100.0 1.1E-35 2.5E-40 306.7 12.0 169 565-792 70-241 (246)
44 TIGR00171 leuD 3-isopropylmala 100.0 3.2E-34 6.9E-39 288.0 8.8 165 565-782 8-174 (188)
45 PRK01641 leuD isopropylmalate 100.0 2E-33 4.2E-38 285.0 9.1 160 566-782 9-172 (200)
46 cd01579 AcnA_Bact_Swivel Bacte 100.0 1.3E-33 2.7E-38 265.9 5.6 121 571-741 1-121 (121)
47 PF00694 Aconitase_C: Aconitas 100.0 3.7E-34 8.1E-39 272.1 2.0 128 595-722 3-130 (131)
48 cd01577 IPMI_Swivel Aconatase- 100.0 2E-30 4.4E-35 231.9 5.9 73 668-741 19-91 (91)
49 cd00404 Aconitase_swivel Aconi 100.0 1.4E-29 2.9E-34 225.0 6.2 71 668-740 17-87 (88)
50 cd01674 Homoaconitase_Swivel H 99.9 1.1E-28 2.5E-33 231.2 3.4 100 572-722 2-101 (129)
51 PRK09238 bifunctional aconitat 99.9 4.2E-27 9.2E-32 275.9 11.9 163 565-793 167-342 (835)
52 cd01576 AcnB_Swivel Aconitase 99.9 1.2E-25 2.6E-30 213.4 5.3 67 668-740 52-130 (131)
53 KOG0454 3-isopropylmalate dehy 99.9 1.1E-25 2.4E-30 243.4 5.3 377 5-466 111-498 (502)
54 TIGR00117 acnB aconitate hydra 99.9 4.2E-24 9.1E-29 250.2 10.9 161 566-793 169-343 (844)
55 PRK14812 hypothetical protein; 99.8 2.9E-20 6.3E-25 174.4 8.1 90 678-782 2-92 (119)
56 PLN00094 aconitate hydratase 2 99.8 1.9E-19 4.1E-24 211.0 12.7 118 657-793 284-415 (938)
57 PF06434 Aconitase_2_N: Aconit 98.3 1.1E-06 2.5E-11 88.4 6.6 119 656-793 44-175 (204)
58 PF04412 DUF521: Protein of un 96.2 0.012 2.7E-07 66.7 8.3 68 329-404 289-356 (400)
59 COG1049 AcnB Aconitase B [Ener 96.1 0.012 2.5E-07 68.4 7.1 117 657-791 213-342 (852)
60 COG1679 Predicted aconitase [G 94.4 0.1 2.2E-06 58.3 7.4 69 328-404 288-356 (403)
61 cd01355 AcnX Putative Aconitas 92.2 0.34 7.3E-06 55.1 7.2 69 330-409 279-347 (389)
62 PF00694 Aconitase_C: Aconitas 34.9 20 0.00043 35.1 1.3 30 568-609 11-40 (131)
63 COG0311 PDX2 Predicted glutami 34.4 44 0.00095 34.7 3.7 75 367-444 38-114 (194)
64 COG1833 Uri superfamily endonu 31.0 1.1E+02 0.0023 30.1 5.5 37 368-411 69-105 (132)
65 TIGR00829 FRU PTS system, fruc 25.5 58 0.0013 29.3 2.5 31 334-365 2-32 (85)
66 COG1445 FrwB Phosphotransferas 22.0 1E+02 0.0023 29.9 3.6 33 332-365 4-36 (122)
No 1
>PLN00070 aconitate hydratase
Probab=100.00 E-value=4.6e-236 Score=2038.78 Aligned_cols=795 Identities=92% Similarity=1.435 Sum_probs=765.9
Q ss_pred ChHHHHhcCCCCCccCCCCceEEEecccccCCCCCchhHHHHHHHHHHHHhhhhhhhhhhhccccCcceeeCCCCceecc
Q 003797 1 MRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTRSENAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGSGIVHQ 80 (795)
Q Consensus 1 ~r~~~~~~g~~~~~~~P~~pv~lviDH~v~~~~~~~~~a~~~n~~~e~~rn~e~~~fl~~~~~~f~~~~~~~pg~GI~Hq 80 (795)
|||+++++|+||++|||.+||||||||||++|.+++++++..|+.+||+||+|||.|++|++++|+||+|+|||+|||||
T Consensus 142 mr~a~~~~g~dp~~inp~vPvdlviDHsvqvd~~g~~~a~~~n~~~e~~rN~Ery~flkw~~~af~~~~vvpPG~GI~HQ 221 (936)
T PLN00070 142 MRDAMNNLGGDPNKINPLVPVDLVIDHSVQVDVARSENAVQANMELEFQRNKERFAFLKWGSTAFQNMLVVPPGSGIVHQ 221 (936)
T ss_pred HHHHHHHcCCCccccCCCCCcceEecCceeecccCCcCHHHHHHHHHHHHhHHHhChhhhhhhhhcCccccCCCCceEee
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhccccceeccCCCcccCCeEEecCCCcCCcCccccccccccHHHHHHHHccCceeecCCceEEEEEecccCCCcchhh
Q 003797 81 VNLEYLGRVVFNTNGMLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGVTATD 160 (795)
Q Consensus 81 v~~E~~a~~v~~~~G~~~P~~vvGtDSHT~~~GalG~la~GvGg~e~~~~m~g~~~~~~vPevv~V~l~G~l~~gVtakD 160 (795)
|++||||++|+.++|+++|+++|||||||||+||||+|||||||+|++++|+|||+||++||||+|+|+|+|++||||||
T Consensus 222 V~lE~la~~v~~~~G~~~PdtlVGtDSHT~~~GglG~lg~GVGg~EaeaaMlgqp~~~~vPevvgV~LtG~L~~GVtAKD 301 (936)
T PLN00070 222 VNLEYLGRVVFNTDGILYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRDGVTATD 301 (936)
T ss_pred echhhhcccccccCCcccCCeEEeCCcccCCCCcccccEecccHHHHHHHHhCCeEEeeCCCEEEEEEEeecCCCCCHhH
Confidence 99999999999778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCccceEEEEecCCCCCCChhhhhhhhccccccCCceeeecCCHHHHHHHhhcCCChhHHHHHHHHHHH
Q 003797 161 LVLTVTQMLRKHGVVGKFVEFHGDGMGELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVAMVEGYLRA 240 (795)
Q Consensus 161 viL~i~~~l~~~G~~g~~vEf~G~gv~~Ls~~~R~TI~NMa~E~GA~~~~fp~D~~t~~YL~~~gr~~~~~~~~~~y~~~ 240 (795)
|||+|+++||++|++||+|||+|||+++||+++|||||||++|+|||+||||+|++|++||+.|||++++++++++|+|+
T Consensus 302 liL~i~~~Lr~~GvvGk~VEF~G~Gv~~LSv~dRaTIaNMa~E~GAt~g~FP~De~T~~YL~~tgR~~~~~~~v~~y~k~ 381 (936)
T PLN00070 302 LVLTVTQMLRKHGVVGKFVEFYGEGMSELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVAMIEAYLRA 381 (936)
T ss_pred HHHHHHHHhCcCccceEEEEEeCCccccCCHhHHhhHhhcchhhCceeeEecCChHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccCCCCCCCCcccEEEEEECCCcccceecCCCCCCccccCccchhhhhhhcccccCCCCCCCccccccceeeecCC
Q 003797 241 NKMFVDYNEPQQERVYSSYLELNLADVEPCISGPKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHG 320 (795)
Q Consensus 241 ~~l~~~~~~~D~~a~Y~~vieiDLs~leP~vA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g 320 (795)
|+||++...+|++|.|+++++||||+|+|+||||++|||++||++++++|.+++.++.+.+++..+.++.....+++++|
T Consensus 382 ~~l~~~~~~~D~da~Y~~vieiDLs~veP~VAgP~~P~~~v~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 461 (936)
T PLN00070 382 NKMFVDYNEPQQERVYSSYLELDLEDVEPCISGPKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKEAQSKVAKFSFHG 461 (936)
T ss_pred ccccccccCCCCCCceeEEEEEEcccceEecCCCcChhcCcCHHHhhhhHHHhhcccccccccccchhhhhhhhhhhccC
Confidence 99999765678999999999999999999999999999999999999999888876554444433323323334566899
Q ss_pred CcccccCccEEEEEeecCCCCCChHHHHHHHHHHHHHHhCCCccCCceeEEEecCCHHHHHHHHHcChHHHHHhcCcEEe
Q 003797 321 QPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIV 400 (795)
Q Consensus 321 ~~~~l~~g~V~~a~IGSCTN~~~~dl~~aA~lLa~~A~~~G~kv~~~V~~~v~PgS~~V~~~l~~~Gl~~~l~~aGa~i~ 400 (795)
+++.+++|+|++|||||||||||||+|+||++|||||+++|+||+||||++|+|||++|++||+++||+++|+++||+|+
T Consensus 462 ~~~~l~~g~V~ia~IgSCTNts~~dl~~aA~lLakkA~~~Glkv~p~Vk~~vaPGS~~V~~~l~~~Gl~~~L~~aGf~v~ 541 (936)
T PLN00070 462 QPAELRHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLEVKPWIKTSLAPGSGVVTKYLLKSGLQKYLNQQGFHIV 541 (936)
T ss_pred CCCCcccCCEeEEEEECCCCCCcHHHHHHHHHHHHHHHhcCCccCCCccEEEeCCCHHHHHHHHHCCcHHHHHHcCCEEc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCccccCCCCCCChhhhccccCCceeEEEEeccCCCCCCCCCCccCCccccCHHHHHHHHHhCccccCCCCCCCccCC
Q 003797 401 GYGCTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVDIDFDKEPIGTTK 480 (795)
Q Consensus 401 ~~gCg~CiG~~g~l~~~~~~~i~~~~~~~~~vss~NRNF~GR~g~~~~~~yLaSP~~vaA~AlaG~I~~d~~~~plg~~~ 480 (795)
+||||+|+||++++.++++++|.+|+++++||||+||||+||||+..+++|||||++||||||+|+|++|+++||+|+++
T Consensus 542 ~~GCg~CIG~~g~l~~~~~~~i~~~~l~~~~VsS~NRNFeGR~gp~~~~~yLaSP~lVaA~AlaG~i~~d~~~dplg~~~ 621 (936)
T PLN00070 542 GYGCTTCIGNSGELDESVASAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVDIDFEKEPIGTGK 621 (936)
T ss_pred CCccccccCCCCCCCchhhhccccCCeeEEEEeccCCCCCCCCCCCCCceEEcCHHHHHHHHHcCCcccCCCCCCCccCC
Confidence 99999999999999999999999999998999999999999999999999999999999999999999999999999999
Q ss_pred CCCeeccccCCCChHHHHHHhhccCCccccccccccccCCCCCcccccCCCCCccccCCCCcccCCCCCCCcCCCCCCCC
Q 003797 481 DGKSVYFKDIWPTTEEIAEVVQSSVLPDMFKSTYEAITKGNPTWNQLSVPASKLYSWDPNSTYIHEPPYFKDMTMDPPGA 560 (795)
Q Consensus 481 ~G~~v~l~di~P~~~ei~~~~~~~~~p~~~~~~~~~~~~~~~~w~~l~~~~~~~~~w~~~st~i~~pp~~~~~~~~~~~~ 560 (795)
+|++|||+||||+.+|+++++...++|++|.+.|++++.+++.|++|+.|.+..|+||++||||++||||++++..++++
T Consensus 622 ~G~~v~l~diwP~~~ei~~~~~~~v~~~~f~~~y~~~~~g~~~w~~l~~p~~~~~~wd~~Styi~~pp~f~~~~~~~~~~ 701 (936)
T PLN00070 622 DGKDVFFRDIWPSNEEVAEVVQSSVLPDMFKSTYEAITKGNPMWNQLSVPSGTLYSWDPKSTYIHEPPYFKNMTMSPPGP 701 (936)
T ss_pred CCCEecccCCCCChHHHHHHHHccCCHHHhhhhhhhccCCccccccCCCCCCCcccCCCCcceeecCCCCCCcCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998888888
Q ss_pred CCcccceEEeecCCCCCcCccccCCCCCCCChHhhHHHHcCCCcccccccccCCCChhhhccccccchhhhhhhcCCCCC
Q 003797 561 HGVKDAYCLLNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGEVG 640 (795)
Q Consensus 561 ~~i~~~~vL~~~gd~itTD~I~PAG~i~~~s~a~~~L~~~g~~~~~~n~yg~rr~n~evm~rg~F~n~r~~n~~~~~~~g 640 (795)
.+|+++|||+++||+||||||||||+|+++||||+||+++|+.++|||+||+||||||||+||||+|+|++|+|+++.+|
T Consensus 702 ~~i~~arvL~~lgD~iTTDHISPAG~i~~~spag~yL~~~gv~~~dfnsygsrRgN~evm~rgtFaNir~~N~~~~g~~g 781 (936)
T PLN00070 702 HGVKDAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLMERGVDRKDFNSYGSRRGNDEIMARGTFANIRIVNKLLKGEVG 781 (936)
T ss_pred cCccCcEEEEEECCCCcccccCCCCCCCCCChHHHHHHhcCCChhhccccccccCcchhhhceeccchhhhhhhcCCCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccCCCccccccchHHHHHHcCCCcEEEeCCccCCCCchhhhhhchhhcCeeEEEecchhHHhhhhhccCccccccc
Q 003797 641 PKTVHVPTGEKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCF 720 (795)
Q Consensus 641 ~~t~~~p~~~~~~v~~~A~~y~~~~~~~iiVaG~NfG~GSSRE~Aa~a~~~lGv~aVIA~SFarI~~~Nlin~Gilpl~~ 720 (795)
++|+|+|+|+.++|||+|++|+++|+|+|||||+|||||||||||||++++||||||||+||+||||+||+|||||||+|
T Consensus 782 ~~t~~~p~g~~~~i~daA~~Y~~~g~p~iIvaG~nyG~GSSRe~AA~~~~~lGvkaVIA~SF~rIhrsNli~~GiLPL~f 861 (936)
T PLN00070 782 PKTVHIPTGEKLSVFDAAMKYKSEGHDTIILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCF 861 (936)
T ss_pred CeeEecCCCceeeHHHHHHHHHhcCCceEEEccCccCCCCcHHHHHHHHHHhCCcEEEEccHHHHHHhhhhhcCcceEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCccchhhccCCCCeEEEEecCCccccCCCCceEEEEcCCCeEEEEEecCCCHHHHHHHHhcChHHHHHHHhhcC
Q 003797 721 KAGEDADSLGLTGHERFSIDLPSKISEIRPGQDVTVTTDSGKSFTCTVRFDTEVELAYFDHGGILPFVIRNLIKQ 795 (795)
Q Consensus 721 ~~~~~~~~l~~~~~~~~~idl~~~~~~~~~g~~v~v~~~~g~~~~~~~~~~t~~e~~~~~aGGll~~v~~~~~~~ 795 (795)
.++++++.+++.+++.++|++.+++.+++||++++++..+|++|.++++++|+.|++||++||+||||+|++++|
T Consensus 862 ~~~~~~~~l~~~g~~~~~i~l~~~~~~l~p~~~~~v~~~~g~~~~~~~r~dt~~E~~~~~~GGiL~~v~r~~~~~ 936 (936)
T PLN00070 862 KSGEDADTLGLTGHERYTIDLPSNISEIKPGQDVTVTTDNGKSFTCTLRFDTEVELAYFDHGGILPYVIRNLIKQ 936 (936)
T ss_pred CCcccHHHHhcCCCceEEEeccccccccCCCCEEEEEeCCCeEEEEEEeCCCHHHHHHHHcCCHHHHHHHHHhhC
Confidence 999999999988889999998776667999998888777889999999999999999999999999999999876
No 2
>PTZ00092 aconitate hydratase-like protein; Provisional
Probab=100.00 E-value=9.1e-234 Score=2017.39 Aligned_cols=789 Identities=71% Similarity=1.163 Sum_probs=758.4
Q ss_pred ChHHHHhcCCCCCccCCCCceEEEecccccCCCCCchhHHHHHHHHHHHHhhhhhhhhhhhccccCcceeeCCCCceecc
Q 003797 1 MRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTRSENAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGSGIVHQ 80 (795)
Q Consensus 1 ~r~~~~~~g~~~~~~~P~~pv~lviDH~v~~~~~~~~~a~~~n~~~e~~rn~e~~~fl~~~~~~f~~~~~~~pg~GI~Hq 80 (795)
|||+++++|+||.+|||.+||+|+|||+||++..++.+++..|+.++|+||+|||.|++|++++|+||+|+|||+|||||
T Consensus 110 mR~~~~~~g~d~~~inp~vpvdlviDHsvq~d~~~~~da~~~n~~~e~~rN~ery~fl~~~~~~f~~~~v~pPg~GI~HQ 189 (898)
T PTZ00092 110 MRDAMKRLGGDPAKINPLVPVDLVIDHSVQVDFSRSPDALELNQEIEFERNLERFEFLKWGSKAFKNLLIVPPGSGIVHQ 189 (898)
T ss_pred HHHHHHHcCCChhhcCCCCCcceecCCCCCCCCCCCcCHHHHHHHHHHHhhHHHhChHHhhhhhhcCCcccCCCCceece
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhccccceeccCCCcccCCeEEecCCCcCCcCccccccccccHHHHHHHHccCceeecCCceEEEEEecccCCCcchhh
Q 003797 81 VNLEYLGRVVFNTNGMLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGVTATD 160 (795)
Q Consensus 81 v~~E~~a~~v~~~~G~~~P~~vvGtDSHT~~~GalG~la~GvGg~e~~~~m~g~~~~~~vPevv~V~l~G~l~~gVtakD 160 (795)
|++||||++|++++|+++|+++|||||||||+||||+|||||||+|++++|+|||+||++||||+|+|+|+|++||||||
T Consensus 190 V~lE~la~vv~~e~G~~~Pd~lvGtDSHT~~~GalG~la~GVGg~Eaeaamlgq~~~~~vPevvgV~LtG~L~~gVtakD 269 (898)
T PTZ00092 190 VNLEYLARVVFNKDGLLYPDSVVGTDSHTTMINGLGVLGWGVGGIEAEAVMLGQPISMVLPEVVGFKLTGKLSEHVTATD 269 (898)
T ss_pred echhhhccccccccCcccCCeEEecCCCCCCCCcccccEecccHHHHHHHHhcCcEEeeCCCEEEEEEEeecCCCcCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCccceEEEEecCCCCCCChhhhhhhhccccccCCceeeecCCHHHHHHHhhcCCChhHHHHHHHHHHH
Q 003797 161 LVLTVTQMLRKHGVVGKFVEFHGDGMGELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVAMVEGYLRA 240 (795)
Q Consensus 161 viL~i~~~l~~~G~~g~~vEf~G~gv~~Ls~~~R~TI~NMa~E~GA~~~~fp~D~~t~~YL~~~gr~~~~~~~~~~y~~~ 240 (795)
|||+|+++||++|++||+|||+|||+++||+++|||||||++|+|||+||||+|++|++||+.+||++++++++++|.|+
T Consensus 270 liL~i~~~L~~~G~vgk~vEF~G~gv~~LSv~dRaTIaNMa~E~GAt~gifp~De~T~~YL~~tgR~~~~~~lve~y~ka 349 (898)
T PTZ00092 270 LVLTVTSMLRKRGVVGKFVEFYGPGVKTLSLADRATIANMAPEYGATMGFFPIDEKTLDYLKQTGRSEEKVELIEKYLKA 349 (898)
T ss_pred HHHHHHHHhcccCccceEEEEEccccccCcHHHhhhhhccccccCceEEEecCChhHHHHHHhcccchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999889999999999
Q ss_pred hhhcccCCCCCCCCcccEEEEEECCCcccceecCCCCCCccccCccchhhhhhhcccccCCCCCCCccccccceeeecCC
Q 003797 241 NKMFVDYNEPQQERVYSSYLELNLADVEPCISGPKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHG 320 (795)
Q Consensus 241 ~~l~~~~~~~D~~a~Y~~vieiDLs~leP~vA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g 320 (795)
|++|++ +|++|.|+++++||||+|+|+||||++|||++||++++++|.+++..+.+.+++.+++.+..+.+++.++|
T Consensus 350 ~~l~~~---~D~da~Y~~vieiDLs~veP~VAgP~~P~~~v~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 426 (898)
T PTZ00092 350 NGLFRT---YAEQIEYSDVLELDLSTVVPSVAGPKRPHDRVPLSDLKKDFTACLSAPVGFKGFGIPEEKHEKKVKFTYKG 426 (898)
T ss_pred HHHhhc---CCCCCceeEEEEEEcccceEeccCCCChhhccCccccCCCHHHhhhhhhhhhccCCCccccccccccccCC
Confidence 999963 68899999999999999999999999999999999999998887765444445544444333333444678
Q ss_pred CcccccCccEEEEEeecCCCCCChHHHHHHHHHHHHHHhCCCccCCceeEEEecCCHHHHHHHHHcChHHHHHhcCcEEe
Q 003797 321 QPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIV 400 (795)
Q Consensus 321 ~~~~l~~g~V~~a~IGSCTN~~~~dl~~aA~lLa~~A~~~G~kv~~~V~~~v~PgS~~V~~~l~~~Gl~~~l~~aGa~i~ 400 (795)
+++.+.||+|++|||||||||||||+|+||++|||||+++|+||+||||++|+|||++|++||+++||+++|+++||.|+
T Consensus 427 ~~~~~~~g~V~~a~IgSCTN~s~~dl~~aA~lLakkAv~kG~kv~p~Vk~~v~PGS~~V~~~l~~~Gl~~~l~~aGf~i~ 506 (898)
T PTZ00092 427 KEYTLTHGSVVIAAITSCTNTSNPSVMLAAGLLAKKAVEKGLKVPPYIKTSLSPGSKVVTKYLEASGLLKYLEKLGFYTA 506 (898)
T ss_pred cccccCCCceeEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCCccCCCccEEEeCCCHHHHHHHHHcCcHHHHHHcCCEEe
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCccccCCCCCCChhhhccccCCceeEEEEeccCCCCCCCCCCccCCccccCHHHHHHHHHhCccccCCCCCCCccCC
Q 003797 401 GYGCTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVDIDFDKEPIGTTK 480 (795)
Q Consensus 401 ~~gCg~CiG~~g~l~~~~~~~i~~~~~~~~~vss~NRNF~GR~g~~~~~~yLaSP~~vaA~AlaG~I~~d~~~~plg~~~ 480 (795)
+||||+|+|||++++++++++|.+|++++++|||+||||+||||+..+++|||||+|||||||+|+|++|+++||+|+++
T Consensus 507 ~~GCg~CiG~~g~l~~~~~~~i~~~~l~~~~VsS~NRNFeGR~g~~~~~~yLaSP~lvaA~AlaG~i~~d~~~dplg~~~ 586 (898)
T PTZ00092 507 GYGCMTCIGNSGDLDPEVSEAITNNDLVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGRVNIDFETEPLGSDK 586 (898)
T ss_pred CCccccccCcCCCCCchhhhhhccCCeeeeeecccCCCCCCCCCCCCCceEEcCHHHHHHHHHcCceecccccCCcccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeeccccCCCChHHHHHHhhccCCccccccccccccCCCCCcccccCCCCCccccCCCCcccCCCCCCCcCCCCCCCC
Q 003797 481 DGKSVYFKDIWPTTEEIAEVVQSSVLPDMFKSTYEAITKGNPTWNQLSVPASKLYSWDPNSTYIHEPPYFKDMTMDPPGA 560 (795)
Q Consensus 481 ~G~~v~l~di~P~~~ei~~~~~~~~~p~~~~~~~~~~~~~~~~w~~l~~~~~~~~~w~~~st~i~~pp~~~~~~~~~~~~ 560 (795)
+|++|||+||||+.+|+++++..+++|++|.+.|..++.++++|++|+++.+++|+||++||||++||||++++..+++.
T Consensus 587 ~G~~v~l~diwP~~~ei~~~~~~~v~~~~f~~~y~~~~~~~~~w~~l~~~~~~~~~w~~~StyI~~pp~f~~~~~~~~~~ 666 (898)
T PTZ00092 587 TGKPVFLRDIWPSREEIQALEAKYVKPEMFKEVYSNITQGNKQWNELQVPKGKLYEWDEKSTYIHNPPFFQTMELEPPPI 666 (898)
T ss_pred CCCEeeeeCCCCChHHHHHHHHccCCHHHhhHhhhcccCCchhhhhccCCCCCccccCCCCCcccCCCCccccccCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998888888
Q ss_pred CCcccceEEeecCCCCCcCccccCCCCCCCChHhhHHHHcCCCcccccccccCCCChhhhccccccchhhhhhhcCCCCC
Q 003797 561 HGVKDAYCLLNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGEVG 640 (795)
Q Consensus 561 ~~i~~~~vL~~~gd~itTD~I~PAG~i~~~s~a~~~L~~~g~~~~~~n~yg~rr~n~evm~rg~F~n~r~~n~~~~~~~g 640 (795)
.+|.++|||+++||+||||||||||+|+++||||+||.++|+.++||||||+||||||||+||||+|+|++|+|+ |.+|
T Consensus 667 ~~i~~arvL~~~gD~iTTDHISPAG~i~~~spag~yL~~~gv~~~dfnsygsrRgN~~vm~RgtF~Niri~N~l~-g~~g 745 (898)
T PTZ00092 667 KSIENAYCLLNLGDSITTDHISPAGNIAKNSPAAKYLMERGVERKDFNTYGARRGNDEVMVRGTFANIRLINKLC-GKVG 745 (898)
T ss_pred CCccCcEEEEEECCCCcccccCCCCCCCCCChHHHHHHHcCCChhhccccccccCCchhhcceeccccceeeeec-cCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999 8899
Q ss_pred CcccccCCCccccccchHHHHHHcCCCcEEEeCCccCCCCchhhhhhchhhcCeeEEEecchhHHhhhhhccCccccccc
Q 003797 641 PKTVHVPTGEKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCF 720 (795)
Q Consensus 641 ~~t~~~p~~~~~~v~~~A~~y~~~~~~~iiVaG~NfG~GSSRE~Aa~a~~~lGv~aVIA~SFarI~~~Nlin~Gilpl~~ 720 (795)
++|.|+|+|+.++|||+|++|+++|+|+|||||+|||||||||||||++++||||||||+||+||||+||+|||||||+|
T Consensus 746 ~~t~~~p~g~~~~i~daA~~Y~~~g~p~iivaG~nyG~GSSRe~AA~~~~~lGvraVIA~SF~rIh~~Nli~~GvlPL~f 825 (898)
T PTZ00092 746 PNTVHVPTGEKMSIYDAAEKYKQEGVPLIVLAGKEYGSGSSRDWAAKGPYLQGVKAVIAESFERIHRSNLVGMGILPLQF 825 (898)
T ss_pred CceEeCCCCcEecHHHHHHHHHHcCCceEEEccCccCCCCcHHHHHHHHHHhCCcEEEEecHHHHHHhhhhhcCcceeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCccchhhccCCCCeEEEEecCCccccCCCCceEEEEcCCCeEEEEEecCCCHHHHHHHHhcChHHHHHHHhhcC
Q 003797 721 KAGEDADSLGLTGHERFSIDLPSKISEIRPGQDVTVTTDSGKSFTCTVRFDTEVELAYFDHGGILPFVIRNLIKQ 795 (795)
Q Consensus 721 ~~~~~~~~l~~~~~~~~~idl~~~~~~~~~g~~v~v~~~~g~~~~~~~~~~t~~e~~~~~aGGll~~v~~~~~~~ 795 (795)
.++++++.++++++++++|++... .++||++++++..+|++|.++++++|+.|++||++||+||||+++++++
T Consensus 826 ~~~~~~~~l~~~~~~~i~i~~~~~--~l~p~~~v~v~~~~G~~~~~~~r~dt~~e~~y~~~GGiL~yv~~~~~~~ 898 (898)
T PTZ00092 826 LNGENADSLGLTGKEQFSIDLNSG--ELKPGQDVTVKTDTGKTFDTILRIDTEVEVEYFKHGGILQYVLRKLVKG 898 (898)
T ss_pred CCcccHHHhcCCCCeEEEEecccc--ccCCCCeEEEEeCCCcEEEEEEeCCCHHHHHHHHcCCHHHHHHHHHhcC
Confidence 999999999999999999987322 5899998888778889999999999999999999999999999999864
No 3
>KOG0452 consensus RNA-binding translational regulator IRP (aconitase superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.4e-235 Score=1895.24 Aligned_cols=790 Identities=73% Similarity=1.198 Sum_probs=779.8
Q ss_pred ChHHHHhcCCCCCccCCCCceEEEecccccCCCCCchhHHHHHHHHHHHHhhhhhhhhhhhccccCcceeeCCCCceecc
Q 003797 1 MRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTRSENAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGSGIVHQ 80 (795)
Q Consensus 1 ~r~~~~~~g~~~~~~~P~~pv~lviDH~v~~~~~~~~~a~~~n~~~e~~rn~e~~~fl~~~~~~f~~~~~~~pg~GI~Hq 80 (795)
|||+++++|+||++|||.+|+|||||||+|+|..++.+++++|+..||+||+|||.||||+.++|+|+.++|||.||+||
T Consensus 103 MRdAv~~lGgdp~KinP~cP~DLviDHSvQvDf~r~~~alqkN~~lEF~RNkERf~FlKWgs~af~NmlivPPGsGivHQ 182 (892)
T KOG0452|consen 103 MRDAVKNLGGDPEKINPLCPVDLVIDHSVQVDFARSADALQKNQELEFERNKERFTFLKWGSRAFDNMLIVPPGSGIVHQ 182 (892)
T ss_pred HHHHHHHcCCCHHHcCCCCCcceEeeeeeEEeeccCHHHHhhcceeeeecchhhhhhhhhhhHhhcceEEeCCCCceeEE
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhccccceeccCCCcccCCeEEecCCCcCCcCccccccccccHHHHHHHHccCceeecCCceEEEEEecccCCCcchhh
Q 003797 81 VNLEYLGRVVFNTNGMLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGVTATD 160 (795)
Q Consensus 81 v~~E~~a~~v~~~~G~~~P~~vvGtDSHT~~~GalG~la~GvGg~e~~~~m~g~~~~~~vPevv~V~l~G~l~~gVtakD 160 (795)
||+|||||+|+.+++++|||.+|||||||+|++|||++||||||+|++++|+|||+.|.+|+||+.+|+|+|.++||++|
T Consensus 183 vNLEYLaRvVF~~~~~lyPDSvVGTDSHtTMidGlGvlGWGVGGIEaEAvMLGqpiSmvlP~ViG~~L~Gkl~~~vTstD 262 (892)
T KOG0452|consen 183 VNLEYLARVVFESKDLLYPDSVVGTDSHTTMIDGLGVLGWGVGGIEAEAVMLGQPISMVLPEVIGYKLTGKLSPLVTSTD 262 (892)
T ss_pred eehhhhhheeeccCceecccccccccCcceeecccceeeccccceehhhhhhcCchheecccceeEEeccccCCCceeeh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCccceEEEEecCCCCCCChhhhhhhhccccccCCceeeecCCHHHHHHHhhcCCChhHHHHHHHHHHH
Q 003797 161 LVLTVTQMLRKHGVVGKFVEFHGDGMGELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVAMVEGYLRA 240 (795)
Q Consensus 161 viL~i~~~l~~~G~~g~~vEf~G~gv~~Ls~~~R~TI~NMa~E~GA~~~~fp~D~~t~~YL~~~gr~~~~~~~~~~y~~~ 240 (795)
++|+|+++||+.|++||||||+|+|+.+||+.||+||+||+||||||.||||.|+.|++||+.|||+++.++.+++|+|+
T Consensus 263 lVLtiTk~LRq~GVvGKFVEF~G~Gva~LSiaDRaTIaNMcPEYGAt~gfFPvD~vtl~yl~~Tgrs~~~~~~i~~yLka 342 (892)
T KOG0452|consen 263 LVLTITKHLRQLGVVGKFVEFFGPGVAELSIADRATIANMCPEYGATMGFFPVDEVTLQYLKQTGRSEEKLDIIEKYLKA 342 (892)
T ss_pred hhhhHHHHHHHhccceeeEEEecCccceechhhhhhhhhcCccccceeeeeccchhHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccCCCCCCCCcccEEEEEECCCcccceecCCCCCCccccCccchhhhhhhcccccCCCCCCCccccccceeeecCC
Q 003797 241 NKMFVDYNEPQQERVYSSYLELNLADVEPCISGPKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHG 320 (795)
Q Consensus 241 ~~l~~~~~~~D~~a~Y~~vieiDLs~leP~vA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g 320 (795)
.++|++...++.++.|.+++++||++|+|+|++|++|+++++|++++++|..||+++++++|+.++++.+++.+.+.|+|
T Consensus 343 ~~~f~~~~~~~q~p~yt~~l~l~L~~vvp~vSGPKRPhDrV~v~dmk~Df~scL~~~vgFKgFai~~e~q~~~v~f~~~g 422 (892)
T KOG0452|consen 343 VKMFRDYNDPSQDPVYTQVLELDLGTVVPSVSGPKRPHDRVAVSDMKADFHSCLDSKVGFKGFAIAPEAQSKSVEFQYDG 422 (892)
T ss_pred HhhhhhccCcccCcceeeEEEEecCceeeccCCCCCCccccchhhHHHHHHHhhcCcccccccccChhHhhceEEEEECC
Confidence 99999987788899999999999999999999999999999999999999999999999999999998888889999999
Q ss_pred CcccccCccEEEEEeecCCCCCChHHHHHHHHHHHHHHhCCCccCCceeEEEecCCHHHHHHHHHcChHHHHHhcCcEEe
Q 003797 321 QPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIV 400 (795)
Q Consensus 321 ~~~~l~~g~V~~a~IGSCTN~~~~dl~~aA~lLa~~A~~~G~kv~~~V~~~v~PgS~~V~~~l~~~Gl~~~l~~aGa~i~ 400 (795)
++++|.||+|+||+|+||||+|||++|.+|++|||+|++.|++|+||+|++++|||..|..||.++|++++|.++||.|+
T Consensus 423 ~~~~l~HGsVVIAAitSCTNtsNPSVMlgAgLlAKkAv~~GL~v~PyikTSLsPGSgvVt~YL~~SGv~pyL~klGF~Iv 502 (892)
T KOG0452|consen 423 TTAKLKHGSVVIAAITSCTNTSNPSVMLGAGLLAKKAVELGLNVKPYIKTSLSPGSGVVTKYLSESGVLPYLEKLGFDIV 502 (892)
T ss_pred eeeEeccCcEEEEEEecccCCCCcHHhhhhhHHHHHHHhcCceecceeecccCCCCchhhhhhhhccchhHHHhcCceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCccccCCCCCCChhhhccccCCceeEEEEeccCCCCCCCCCCccCCccccCHHHHHHHHHhCccccCCCCCCCccCC
Q 003797 401 GYGCTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVDIDFDKEPIGTTK 480 (795)
Q Consensus 401 ~~gCg~CiG~~g~l~~~~~~~i~~~~~~~~~vss~NRNF~GR~g~~~~~~yLaSP~~vaA~AlaG~I~~d~~~~plg~~~ 480 (795)
+|||++||||+|+|.+++..+|.+|++++++|+|+||||+||+||.+++||||||++|+||||+|++++||+++|+|+++
T Consensus 503 GYGC~TCiGNsgpl~e~V~~ai~~ndlV~~gvLSGNrNFEGRvhp~tRANYLASPpLvvaYaiaGtV~IDfe~eplg~~~ 582 (892)
T KOG0452|consen 503 GYGCMTCIGNSGPLDEAVVNAIEQNDLVAAGVLSGNRNFEGRVHPNTRANYLASPPLVVAYAIAGTVNIDFETEPLGVDP 582 (892)
T ss_pred ccccceeccCCCCCCHHHHHhhhcCCeEEEEEeecCCCccccccccchhhhccCchHHhhhhhcceeecceeccccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeeccccCCCChHHHHHHhhccCCccccccccccccCCCCCcccccCCCCCccccCCCCcccCCCCCCCcCCCCCCCC
Q 003797 481 DGKSVYFKDIWPTTEEIAEVVQSSVLPDMFKSTYEAITKGNPTWNQLSVPASKLYSWDPNSTYIHEPPYFKDMTMDPPGA 560 (795)
Q Consensus 481 ~G~~v~l~di~P~~~ei~~~~~~~~~p~~~~~~~~~~~~~~~~w~~l~~~~~~~~~w~~~st~i~~pp~~~~~~~~~~~~ 560 (795)
+|+.+||+||||+++|++++++++|.|+||++.|+.|..+++.|+.|++|++.+|+||++||||++||||++++.++..+
T Consensus 583 ~Gk~vfl~DIWPtr~Ev~~ve~~~Vip~mFk~~y~~I~~gn~~Wn~L~~p~~~Ly~Wd~~STYI~~ppfF~~mT~~~p~~ 662 (892)
T KOG0452|consen 583 DGKNVFLRDIWPTREEVAEVEEEHVIPSMFKEVYEKIELGNPDWNQLEVPSSKLYPWDPKSTYIKEPPFFEGMTRDLPGP 662 (892)
T ss_pred CCCeEEEeecCCCHHHHHHHHHhcccHHHHHHHHHHHhhcChhhhhccCCccceeccCCCCceecCCccccccccCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccceEEeecCCCCCcCccccCCCCCCCChHhhHHHHcCCCcccccccccCCCChhhhccccccchhhhhhhcCCCCC
Q 003797 561 HGVKDAYCLLNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGEVG 640 (795)
Q Consensus 561 ~~i~~~~vL~~~gd~itTD~I~PAG~i~~~s~a~~~L~~~g~~~~~~n~yg~rr~n~evm~rg~F~n~r~~n~~~~~~~g 640 (795)
++|++|++|+.+||+||||||||||+|+++|||++||..||++++|||+||+||||++||.||||+|+|+.|++.. +.|
T Consensus 663 ~~i~~A~~LLnlGDSvTTDHISPAGsI~r~SpAAr~L~~Rg~tprdFNsYGsRRGND~vMaRGTFANIrlvNkl~~-k~g 741 (892)
T KOG0452|consen 663 QSIEDAYCLLNLGDSVTTDHISPAGSIARTSPAARYLTERGLTPRDFNSYGSRRGNDAVMARGTFANIRLVNKLLS-KVG 741 (892)
T ss_pred ccccceeEEEeccCcccccccCCCccccccCHHHHHHHhcCCChhhccccccccCchhhhhcccchhhHHHHHHhc-ccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999985 899
Q ss_pred CcccccCCCccccccchHHHHHHcCCCcEEEeCCccCCCCchhhhhhchhhcCeeEEEecchhHHhhhhhccCccccccc
Q 003797 641 PKTVHVPTGEKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCF 720 (795)
Q Consensus 641 ~~t~~~p~~~~~~v~~~A~~y~~~~~~~iiVaG~NfG~GSSRE~Aa~a~~~lGv~aVIA~SFarI~~~Nlin~Gilpl~~ 720 (795)
|.|.|+|+||.+.|||+|++|+++|.|.||+||+.||||||||||||+|.+||||||||+||+||||+||++|||+||+|
T Consensus 742 P~TvHiPsge~ldvFdAA~~Y~~~g~p~iilaGkeYGsGsSRDWAAKGP~LlGvKAViaeS~ErIHrsnLvGmGIiPl~f 821 (892)
T KOG0452|consen 742 PKTVHIPSGEELDVFDAAERYKSEGIPLIILAGKEYGSGSSRDWAAKGPFLLGVKAVIAESYERIHRSNLVGMGIIPLQF 821 (892)
T ss_pred CceEecCCCCeecHhhHHHHHHhcCCceEEEeccccCCCCccchhhcCchhhhhHHHHHHHHHHHHhhccccceeeeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCccchhhccCCCCeEEEEecCCccccCCCCceEEEEcCCCeEEEEEecCCCHHHHHHHHhcChHHHHHHHhh
Q 003797 721 KAGEDADSLGLTGHERFSIDLPSKISEIRPGQDVTVTTDSGKSFTCTVRFDTEVELAYFDHGGILPFVIRNLI 793 (795)
Q Consensus 721 ~~~~~~~~l~~~~~~~~~idl~~~~~~~~~g~~v~v~~~~g~~~~~~~~~~t~~e~~~~~aGGll~~v~~~~~ 793 (795)
..++++++|+++|.|.++|.+++. .|+||+.++|+..+|+.|.+.+|+|++.|+.|+++||||||+.|+++
T Consensus 822 ~~Ge~AdtLgLtG~E~yti~lP~~--~lkPgq~i~v~~dtGk~F~~~~rFdteVeltyy~~GGiL~y~iRk~~ 892 (892)
T KOG0452|consen 822 LPGEDADTLGLTGRERYTIHLPEN--ILKPGQDITVTTDTGKVFVCTLRFDTEVELTYYKNGGILNYMIRKLS 892 (892)
T ss_pred cCCCChhhcCcccceeEEEECCcc--cCCCCceEEEEecCCcEEEEEEEecceEEEEEEecCCcHHHHHhhcC
Confidence 999999999999999999999984 39999999999888999999999999999999999999999999874
No 4
>TIGR01341 aconitase_1 aconitate hydratase 1. This model represents one form of the TCA cycle enzyme aconitate hydratase, also known as aconitase and citrate hydro-lyase. It is found in bacteria, archaea, and eukaryotic cytosol. It has been shown to act also as an iron-responsive element binding protein in animals and may have the same role in other eukaryotes.
Probab=100.00 E-value=9e-232 Score=1996.97 Aligned_cols=782 Identities=65% Similarity=1.067 Sum_probs=745.9
Q ss_pred ChHHHHhcCCCCCccCCCCceEEEecccccCCCCCchhHHHHHHHHHHHHhhhhhhhhhhhccccCcceeeCCCCceecc
Q 003797 1 MRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTRSENAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGSGIVHQ 80 (795)
Q Consensus 1 ~r~~~~~~g~~~~~~~P~~pv~lviDH~v~~~~~~~~~a~~~n~~~e~~rn~e~~~fl~~~~~~f~~~~~~~pg~GI~Hq 80 (795)
|||+++++|+||.+|||.+||+|+|||+||++..++.+++..|+.++|+||+|||.||||++++|.+|+|+|||+|||||
T Consensus 86 mrda~~~~G~d~~~inp~vPvdlviDHsv~~d~~~~~da~~~n~~~e~~rN~ery~fLkw~~~~f~~~~v~ppg~GI~Hq 165 (876)
T TIGR01341 86 MREAMKNLGGDPKKINPLVPVDLVIDHSVQVDYYGTEYALEFNMELEFERNLERYQFLKWAQKAFRNFRVVPPGTGIIHQ 165 (876)
T ss_pred HHHHHHHcCCCHHHcCCCCCcceEeCCCCCCCCCCCcCHHHHHHHHHHHhCHHHHhHHHHHHHHcccCCCCCCCCCeece
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhccccceeccCC----CcccCCeEEecCCCcCCcCccccccccccHHHHHHHHccCceeecCCceEEEEEecccCCCc
Q 003797 81 VNLEYLGRVVFNTN----GMLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGV 156 (795)
Q Consensus 81 v~~E~~a~~v~~~~----G~~~P~~vvGtDSHT~~~GalG~la~GvGg~e~~~~m~g~~~~~~vPevv~V~l~G~l~~gV 156 (795)
||+|+||++|+.++ |+++|+++|||||||||+||||+|||||||+|++++|+||++||++||||+|+|+|+|++||
T Consensus 166 V~lE~la~~v~~~~~~g~g~a~PdtlVGtDSHT~t~GalG~la~GVGg~Eaeavmlgq~~~~~vPevvgV~LtG~L~~gV 245 (876)
T TIGR01341 166 VNLEYLATVVFKAEVDGELTAYPDSLVGTDSHTTMINGLGVLGWGVGGIEAEAAMLGQPYYMNVPEVIGVKLTGKLQEGV 245 (876)
T ss_pred echhhcccceeecccCCcceeccceeeecCCCCCCCCeecceEecccHHHHHHHHhCCcEEeeCCCEEEEEEEeecCCCc
Confidence 99999999999653 69999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHHhcCccceEEEEecCCCCCCChhhhhhhhccccccCCceeeecCCHHHHHHHhhcCCChhHHHHHHH
Q 003797 157 TATDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVAMVEG 236 (795)
Q Consensus 157 takDviL~i~~~l~~~G~~g~~vEf~G~gv~~Ls~~~R~TI~NMa~E~GA~~~~fp~D~~t~~YL~~~gr~~~~~~~~~~ 236 (795)
|||||||+|+++||++|++||+|||+|||+++||+++|||||||++|+|||+||||+|++|++||+.+||++++++++++
T Consensus 246 tAkDliL~i~~~L~~~G~vgk~VEF~G~gv~~LS~~dRaTIaNMa~E~GAt~g~fp~De~T~~YL~~tgr~~~~~~l~~~ 325 (876)
T TIGR01341 246 TATDLVLTVTQMLRKKGVVGKFVEFFGPGLSELSLADRATIANMAPEYGATCGFFPIDDVTLQYLRLTGRDGDHVELVEK 325 (876)
T ss_pred CHHHHHHHHHHHhcccCcceEEEEEeCccccccCHhHHhhhhhcchhhCceEEEEcCChhHHHHHHhCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcccCCCCC-CCCcccEEEEEECCCcccceecCCCCCCccccCccchhhhhhhcccccCCCCCCCcccccccee
Q 003797 237 YLRANKMFVDYNEPQ-QERVYSSYLELNLADVEPCISGPKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVK 315 (795)
Q Consensus 237 y~~~~~l~~~~~~~D-~~a~Y~~vieiDLs~leP~vA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 315 (795)
|+|+|++|+ +| ++|.|+++++||||+|||+||||++|||++||+++.+.|.+++..+.+.+++.+... ...
T Consensus 326 y~k~~~l~~----~d~~~a~Y~~vieiDLs~veP~VAgP~~P~~~v~l~e~~~~~~~~~~~~~~~~~~~~~~~----~~~ 397 (876)
T TIGR01341 326 YARAQGLFY----DDSEEPRYTDVVELDLSDVEPSVAGPKRPQDRIPLREVKAKFSKELEKNGGDKGFTLRKE----PLK 397 (876)
T ss_pred HHHhccccc----CCCCCCceeEEEEEEcccceeeccCCCChhhccChhhcchhhhhHhhhhcccccccchhh----hhh
Confidence 999999995 45 799999999999999999999999999999999999998877654332222221111 111
Q ss_pred eecCCCcccccCccEEEEEeecCCCCCChHHHHHHHHHHHHHHhCCCccCCceeEEEecCCHHHHHHHHHcChHHHHHhc
Q 003797 316 FSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQ 395 (795)
Q Consensus 316 ~~~~g~~~~l~~g~V~~a~IGSCTN~~~~dl~~aA~lLa~~A~~~G~kv~~~V~~~v~PgS~~V~~~l~~~Gl~~~l~~a 395 (795)
..++|++..|.||+|++|||||||||||||+|+||++|||||+++|+||+||||++|+|||++|++||+++||+++|+++
T Consensus 398 ~~~~g~~~~l~~g~I~~a~IgSCTN~s~~dl~~aA~lLakkA~~kG~kv~p~Vk~~v~PGS~~V~~~l~~~Gl~~~L~~a 477 (876)
T TIGR01341 398 KKVNGQNKQLEDGAVVIAAITSCTNTSNPSVMLGAGLLAKKAVELGLKVPPYVKTSLAPGSKVVTDYLAESGLLPYLEEL 477 (876)
T ss_pred eeccCcceecCCCcEEEEEeeCCCCCCcHhHHHHHHHHHHHHHhcCCccCCCccEEEeCCCHHHHHHHHHCCcHHHHHHc
Confidence 12468888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEeccCCccccCCCCCCChhhhccccCCceeEEEEeccCCCCCCCCCCccCCccccCHHHHHHHHHhCccccCCCCCC
Q 003797 396 GFHIVGYGCTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVDIDFDKEP 475 (795)
Q Consensus 396 Ga~i~~~gCg~CiG~~g~l~~~~~~~i~~~~~~~~~vss~NRNF~GR~g~~~~~~yLaSP~~vaA~AlaG~I~~d~~~~p 475 (795)
||.|++||||+|+||+|++.++++++|.+++++.++|||+||||+||||+..+++|||||+|||||||+|+|++|+++||
T Consensus 478 Gf~i~~~GCg~CiG~~g~l~~~~e~ai~~~~l~~~~VsS~NRNFeGR~g~~~~~~yLaSP~lVaA~AlaG~I~~d~~~dp 557 (876)
T TIGR01341 478 GFNLVGYGCTTCIGNSGPLPKYVEEAIKKNDLEVYAVLSGNRNFEGRIHPLVKGNYLASPPLVVAYALAGNIDINLYTEP 557 (876)
T ss_pred CCEEecCCccccccCCCCCCcchhcccccCCceEEEEeccCCCCCCCCCCCCCceEECCHHHHHHHHHhCCcccCccCCC
Confidence 99999999999999999999999999999999889999999999999999999999999999999999999999999999
Q ss_pred CccCCCCCeeccccCCCChHHHHHHhhccCCccccccccccccCCCCCcccccCCCCCccccCCCCcccCCCCCCCcCCC
Q 003797 476 IGTTKDGKSVYFKDIWPTTEEIAEVVQSSVLPDMFKSTYEAITKGNPTWNQLSVPASKLYSWDPNSTYIHEPPYFKDMTM 555 (795)
Q Consensus 476 lg~~~~G~~v~l~di~P~~~ei~~~~~~~~~p~~~~~~~~~~~~~~~~w~~l~~~~~~~~~w~~~st~i~~pp~~~~~~~ 555 (795)
+|++++|++|||+||||+.+|+++++...++++||.+.|.+++.+++.|++|+++.++.|+||++||||++||||++++.
T Consensus 558 lg~~~~G~~v~l~diwP~~~ei~~~~~~~v~~~~f~~~y~~~~~g~~~w~~l~~~~~~~~~w~~~StyI~~pp~f~~~~~ 637 (876)
T TIGR01341 558 IGTDKDGKPVYLRDIWPSNKEIAAYVNMAVKPEMFKKEYENIFEGNERWNSIKTPSGDTYSWDEKSTYIRLPPFFEEMKQ 637 (876)
T ss_pred cccCCCCCeeeccCCCCChHHHHHHHHhcCCHHHcccccccccCCcccccccCCCCCCccccCCCCCcccCCCCCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCCCCCcccceEEeecCCCCCcCccccCCCCCCCChHhhHHHHcCCCcccccccccCCCChhhhccccccchhhhhhhc
Q 003797 556 DPPGAHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLL 635 (795)
Q Consensus 556 ~~~~~~~i~~~~vL~~~gd~itTD~I~PAG~i~~~s~a~~~L~~~g~~~~~~n~yg~rr~n~evm~rg~F~n~r~~n~~~ 635 (795)
+++++.+|.++|||+++||+||||||||||+|+++||||+||+++|+.++||||||+||||||||+||||+|+|+.|+|+
T Consensus 638 ~~~~~~~i~~arvL~~lgD~iTTDHISPAG~i~~~spag~yL~~~gv~~~dfnsygsrRgN~evm~rgtFanir~~N~l~ 717 (876)
T TIGR01341 638 DPEEVEDIKGARILLLLGDSITTDHISPAGSITKDSPAGKYLQERGVSRRDFNSYGSRRGNHEVMMRGTFANIRIKNLMV 717 (876)
T ss_pred CCCCCCCccCCEEEEEECCCCcccccCCCCCCCCCChHHHHHHHcCCChhhcccccccccCHHHHHHhhcccchhhhhcc
Confidence 88888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccccCCCccccccchHHHHHHcCCCcEEEeCCccCCCCchhhhhhchhhcCeeEEEecchhHHhhhhhccCcc
Q 003797 636 NGEVGPKTVHVPTGEKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGI 715 (795)
Q Consensus 636 ~~~~g~~t~~~p~~~~~~v~~~A~~y~~~~~~~iiVaG~NfG~GSSRE~Aa~a~~~lGv~aVIA~SFarI~~~Nlin~Gi 715 (795)
+|.+|++|+|+|+|+.++|||+|++|+++|+|+|||||+|||||||||||+|++++|||+||||+||+||||+||+||||
T Consensus 718 ~g~egg~t~~~p~g~~~~i~daA~~Y~~~g~p~iivag~~yG~GSSRe~Aa~~~~~lGv~avia~sf~rI~~~N~~~~Gi 797 (876)
T TIGR01341 718 KGKEGGYTVHFPDGKVASVYDAAMQYKKEGTPLVVIAGKEYGSGSSRDWAAKGTKLLGVKAVIAESFERIHRSNLVGMGV 797 (876)
T ss_pred cCccCceeEecCCCccccHHHHHHHHHhcCCceEEEccCccCCCCcHHHHHHHHHHhCCcEEEEccHHHHHHhhHhhcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCccchhhccCCCCeEEEEecCCccccCCCCceEEEEc--CCC--eEEEEEecCCCHHHHHHHHhcChHHHHHHH
Q 003797 716 IPLCFKAGEDADSLGLTGHERFSIDLPSKISEIRPGQDVTVTT--DSG--KSFTCTVRFDTEVELAYFDHGGILPFVIRN 791 (795)
Q Consensus 716 lpl~~~~~~~~~~l~~~~~~~~~idl~~~~~~~~~g~~v~v~~--~~g--~~~~~~~~~~t~~e~~~~~aGGll~~v~~~ 791 (795)
|||+|+++++|++|+++++|+++|... .+++||++++++. .+| ++|.+.+++||+.|++||++||+||||+|+
T Consensus 798 lpl~~~~~~~~~~l~l~g~e~~~i~~~---~~l~pg~~v~v~~~~~~g~~~~~~~~~r~dt~~E~~~~~~GGiL~yv~r~ 874 (876)
T TIGR01341 798 IPLQFPQGEDAETLGLTGDETIDIDGI---KDLKPGKEVTVTFTNSKGEKITFKCVLRIDTEVELDYYKHGGILQYVLRK 874 (876)
T ss_pred ceEecCCCCCHHHhCCCCCCeEEEcCc---cccCCCCEEEEEEEcCCCCEEEEEEEEecCCHHHHHHHHcCCHHHHHHHh
Confidence 999999999999999999999998532 2579998887753 577 789999999999999999999999999999
Q ss_pred hh
Q 003797 792 LI 793 (795)
Q Consensus 792 ~~ 793 (795)
++
T Consensus 875 ~~ 876 (876)
T TIGR01341 875 FL 876 (876)
T ss_pred hC
Confidence 74
No 5
>PRK12881 acnA aconitate hydratase; Provisional
Probab=100.00 E-value=1.3e-230 Score=1993.19 Aligned_cols=779 Identities=60% Similarity=1.002 Sum_probs=742.3
Q ss_pred ChHHHHhcCCCCCccCCCCceEEEecccccCCCCCchhHHHHHHHHHHHHhhhhhhhhhhhccccCcceeeCCCCceecc
Q 003797 1 MRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTRSENAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGSGIVHQ 80 (795)
Q Consensus 1 ~r~~~~~~g~~~~~~~P~~pv~lviDH~v~~~~~~~~~a~~~n~~~e~~rn~e~~~fl~~~~~~f~~~~~~~pg~GI~Hq 80 (795)
|||+++++|+||+++||.+||+++|||+||++..++.+++.+|+.++|+||+|||.||||++++|.+|+|+|||+|||||
T Consensus 103 mr~a~~~~G~d~~~~~p~vpvdlviDHsv~~d~~~~~da~~~n~~~e~~rN~ery~fLkw~~~~f~~~~v~pPg~GI~Hq 182 (889)
T PRK12881 103 MRDAAAEAGGDPAKINPLVPVDLVVDHSVAVDYFGQKDALDLNMKIEFQRNAERYQFLKWGMQAFDNFRVVPPGTGIMHQ 182 (889)
T ss_pred HHHHHHHcCCChhhcCCCCCcceEeCCCCccCCCCCCCHHHHHHHHHHHhhHHHhChHHHHHHHccCCCCCCCCCCccce
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhccccceeccC----CCcccCCeEEecCCCcCCcCccccccccccHHHHHHHHccCceeecCCceEEEEEecccCCCc
Q 003797 81 VNLEYLGRVVFNT----NGMLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGV 156 (795)
Q Consensus 81 v~~E~~a~~v~~~----~G~~~P~~vvGtDSHT~~~GalG~la~GvGg~e~~~~m~g~~~~~~vPevv~V~l~G~l~~gV 156 (795)
|++|+||++|+.+ .|+++|+++|||||||||+||||+|||||||+|++++|+||++||++||||+|+|+|+|++||
T Consensus 183 V~lE~la~vv~~~~~~~~g~~~PdtlVGtDSHT~~~galG~lg~GVGg~Eaeaamlgq~~~~~vPevigV~l~G~L~~gV 262 (889)
T PRK12881 183 VNLEYLARVVHTKEDDGDTVAYPDTLVGTDSHTTMINGIGVLGWGVGGIEAEAVMLGQPVYMLIPDVVGVELTGKLREGV 262 (889)
T ss_pred EchhhhcccceecccCCcceecCCeEEecCCCCCCCccccceEecccHHHHHHHHhCCcEEeeCCCEEEEEEEeecCCCc
Confidence 9999999999964 379999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHHhcCccceEEEEecCCCCCCChhhhhhhhccccccCCceeeecCCHHHHHHHhhcCCChhHHHHHHH
Q 003797 157 TATDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVAMVEG 236 (795)
Q Consensus 157 takDviL~i~~~l~~~G~~g~~vEf~G~gv~~Ls~~~R~TI~NMa~E~GA~~~~fp~D~~t~~YL~~~gr~~~~~~~~~~ 236 (795)
|||||||+|+++||++|++||+|||+||||++||+++|||||||++|||||+||||+|++|++||+.|||++++++++|+
T Consensus 263 tAkDliL~i~~~L~~~G~vgk~vEF~G~gv~~LS~~dRaTIaNMa~E~GAt~g~fp~De~T~~YL~~tgr~~~~v~l~e~ 342 (889)
T PRK12881 263 TATDLVLTVTEMLRKEGVVGKFVEFFGEGVASLTLGDRATIANMAPEYGATMGFFPVDEQTLDYLRLTGRTEAQIALVEA 342 (889)
T ss_pred CHHHHHHHHHHHhcccccceEEEEEECccccccCHHHHHHHhcccHhhCceEEEecCChhHHHHHHhcccchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcccCCCCCCCCcccEEEEEECCCcccceecCCCCCCccccCccchhhhhhhcccccCCCCCCCccccccceee
Q 003797 237 YLRANKMFVDYNEPQQERVYSSYLELNLADVEPCISGPKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKF 316 (795)
Q Consensus 237 y~~~~~l~~~~~~~D~~a~Y~~vieiDLs~leP~vA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 316 (795)
|.|+|++|++ +|++|.|+++++||||+|+|+||||++|||++||++++++|.+++..+...+++....
T Consensus 343 y~ka~~l~~~---~d~~a~Y~~vieiDLs~veP~vAgP~~P~~~v~l~e~~~~~~~~~~~~~~~~~~~~~~--------- 410 (889)
T PRK12881 343 YAKAQGLWGD---PKAEPRYTRTLELDLSTVAPSLAGPKRPQDRIALGNVKSAFSDLFSKPVAENGFAKKA--------- 410 (889)
T ss_pred HHHHHHhhcC---cCCCCceeEEEEEEccceeEeccCCCChhhCcCchhcCcCHHHHhhhHHHhhhhhccc---------
Confidence 9999999974 6889999999999999999999999999999999999998887764322211111000
Q ss_pred ecCCCcccccCccEEEEEeecCCCCCChHHHHHHHHHHHHHHhCCCccCCceeEEEecCCHHHHHHHHHcChHHHHHhcC
Q 003797 317 SFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQG 396 (795)
Q Consensus 317 ~~~g~~~~l~~g~V~~a~IGSCTN~~~~dl~~aA~lLa~~A~~~G~kv~~~V~~~v~PgS~~V~~~l~~~Gl~~~l~~aG 396 (795)
-.+....+.||+|++|||||||||||||+|+||++|||||+++|+||+||||++|+|||++|++||+++||+++|+++|
T Consensus 411 -~~~~~~~l~~g~V~~a~IgSCTNts~~dl~~aA~lLak~A~~kG~kv~p~Vk~~v~PGS~~V~~~l~~~Gl~~~l~~aG 489 (889)
T PRK12881 411 -QTSNGVDLPDGAVAIAAITSCTNTSNPSVLIAAGLLAKKAVERGLTVKPWVKTSLAPGSKVVTEYLERAGLLPYLEKLG 489 (889)
T ss_pred -ccCCCccccCccEEEEEEeCCCCCCcHHHHHHHHHHHHHHHhCCCccCCCccEEEeCCCHHHHHHHHHcCcHHHHHHcC
Confidence 0234456889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEeccCCccccCCCCCCChhhhccccCCceeEEEEeccCCCCCCCCCCccCCccccCHHHHHHHHHhCccccCCCCCCC
Q 003797 397 FHIVGYGCTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVDIDFDKEPI 476 (795)
Q Consensus 397 a~i~~~gCg~CiG~~g~l~~~~~~~i~~~~~~~~~vss~NRNF~GR~g~~~~~~yLaSP~~vaA~AlaG~I~~d~~~~pl 476 (795)
|.|++||||+|+||+|++.++++++|.+|++++++|||+||||+||||+..+++|||||+|||||||+|+|++|+++||+
T Consensus 490 f~i~~~GCg~CiG~~g~l~~~~~~~i~~g~~~~~~VsS~NRNFeGR~g~~~~~~yLaSP~lvaA~AlaG~i~~d~~~dpl 569 (889)
T PRK12881 490 FGIVGYGCTTCIGNSGPLTPEIEQAITKNDLVAAAVLSGNRNFEGRIHPNIKANFLASPPLVVAYALAGTVRRDLMTEPL 569 (889)
T ss_pred CEEeCCcchhhhccCCCCCchhhhhcccCCceeEEEeecCCCCCCCCCCCCCceEECCHHHHHHHHhcCceecCCCCCCc
Confidence 99999999999999999999999999999988889999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCeeccccCCCChHHHHHHhhccCCccccccccccccCCCCCcccccCCCCCccccCCCCcccCCCCCCCcCCCC
Q 003797 477 GTTKDGKSVYFKDIWPTTEEIAEVVQSSVLPDMFKSTYEAITKGNPTWNQLSVPASKLYSWDPNSTYIHEPPYFKDMTMD 556 (795)
Q Consensus 477 g~~~~G~~v~l~di~P~~~ei~~~~~~~~~p~~~~~~~~~~~~~~~~w~~l~~~~~~~~~w~~~st~i~~pp~~~~~~~~ 556 (795)
|++++|++|||+||||+.+|+++++.+.+++++|...|++++.+++.|++|+++.+++|+||++||||++||||+.+...
T Consensus 570 g~~~~G~~v~l~diwP~~~ei~~~~~~~v~~~~f~~~y~~~~~~~~~w~~l~~~~~~~~~wd~~StyI~~pPff~~~~~~ 649 (889)
T PRK12881 570 GKGKDGRPVYLKDIWPSSAEIDALVAFAVDPEDFRKNYAEVFKGSELWAAIEAPDGPLYDWDPKSTYIRRPPFFDFSMGP 649 (889)
T ss_pred ccCCCCCEeeccCCCCChHHHHHHHHcCCCHHHhhhhhhhhcCCccccccccCCCCCeeccCCCCCcccCCCCCcccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred CCCCCCcccceEEeecCCCCCcCccccCCCCCCCChHhhHHHHcCCCcccccccccCCCChhhhccccccchhhhhhhcC
Q 003797 557 PPGAHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLLN 636 (795)
Q Consensus 557 ~~~~~~i~~~~vL~~~gd~itTD~I~PAG~i~~~s~a~~~L~~~g~~~~~~n~yg~rr~n~evm~rg~F~n~r~~n~~~~ 636 (795)
+.++.+|.++|||+++||+||||||||||+|+++||||+||+++|+.++||||||+||||||||+||||+|+|++|+|.+
T Consensus 650 ~~~~~~i~~arvL~~~gD~iTTDHISPAG~i~~~spag~yL~~~gv~~~dfnsyg~rRgN~evm~rgtF~nir~~N~l~~ 729 (889)
T PRK12881 650 AASIATVKGARPLAVLGDSITTDHISPAGAIKADSPAGKYLKENGVPKADFNSYGSRRGNHEVMMRGTFANVRIKNLMIP 729 (889)
T ss_pred CCCCCCccCCEEEEEECCCCcccccCcCCCCCCCCchHHHHHHcCCChhhcccccccccchHHhhhhccccCcccceecc
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccccCCCccccccchHHHHHHcCCCcEEEeCCccCCCCchhhhhhchhhcCeeEEEecchhHHhhhhhccCccc
Q 003797 637 GEVGPKTVHVPTGEKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGII 716 (795)
Q Consensus 637 ~~~g~~t~~~p~~~~~~v~~~A~~y~~~~~~~iiVaG~NfG~GSSRE~Aa~a~~~lGv~aVIA~SFarI~~~Nlin~Gil 716 (795)
+.+|++|+|+|+|+.++|||+|++|+++|+|+|||||+|||||||||||||++++|||+||||+||+||||+||+|||||
T Consensus 730 ~~egg~t~~~p~g~~~~i~daA~~y~~~g~p~iIvaG~nyG~GSSRe~Aa~~~~~lGv~aVIA~SFaRIh~~Nli~~Gil 809 (889)
T PRK12881 730 GKEGGLTLHQPSGEVLSIYDAAMRYQAAGTPLVVIAGEEYGTGSSRDWAAKGTRLLGVKAVIAESFERIHRSNLVGMGVL 809 (889)
T ss_pred ccccCeeEeCCCCcEeeHHHHHHHHHhcCCceEEEecCccCCCCcHHHHHHHHHHhCCcEEEEecHHHHHHhhhhhcCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCccchhhccCCCCeEEEEecCCccccCCCCceEEEE--cCCC--eEEEEEecCCCHHHHHHHHhcChHHHHHHHh
Q 003797 717 PLCFKAGEDADSLGLTGHERFSIDLPSKISEIRPGQDVTVT--TDSG--KSFTCTVRFDTEVELAYFDHGGILPFVIRNL 792 (795)
Q Consensus 717 pl~~~~~~~~~~l~~~~~~~~~idl~~~~~~~~~g~~v~v~--~~~g--~~~~~~~~~~t~~e~~~~~aGGll~~v~~~~ 792 (795)
||+|++++++++|.++++++++|+...+ .+.||++++++ ..+| .+|.+.++++|+.|++|+++||+|+|+++++
T Consensus 810 pL~f~~~~~~~~l~l~g~d~i~I~~~~~--~i~p~~~v~v~~~~~~G~~~~~~~~~r~dt~~e~e~~~aGGiL~yv~~~~ 887 (889)
T PRK12881 810 PLQFKGGDSRQSLGLTGGETFDIEGLPG--EIKPRQDVTLVIHRADGSTERVPVLCRIDTPIEVDYYKAGGILPYVLRQL 887 (889)
T ss_pred eEEeCCccchhhcCcCCCCEEEEeCCcc--ccCCCCeEEEEEEeCCCCEEEEEEEeccCCHHHHHHHHcCCHHHHHHHHh
Confidence 9999999999999999999999986542 58899888764 3566 6788888889999999999999999999998
Q ss_pred hc
Q 003797 793 IK 794 (795)
Q Consensus 793 ~~ 794 (795)
++
T Consensus 888 ~~ 889 (889)
T PRK12881 888 LA 889 (889)
T ss_pred hC
Confidence 63
No 6
>PRK09277 aconitate hydratase; Validated
Probab=100.00 E-value=3.3e-230 Score=1985.85 Aligned_cols=778 Identities=63% Similarity=1.063 Sum_probs=745.9
Q ss_pred ChHHHHhcCCCCCccCCCCceEEEecccccCCCCCchhHHHHHHHHHHHHhhhhhhhhhhhccccCcceeeCCCCceecc
Q 003797 1 MRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTRSENAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGSGIVHQ 80 (795)
Q Consensus 1 ~r~~~~~~g~~~~~~~P~~pv~lviDH~v~~~~~~~~~a~~~n~~~e~~rn~e~~~fl~~~~~~f~~~~~~~pg~GI~Hq 80 (795)
|||+++++|+||++|||.+||++|+||+||++..++.+++..|+.++|+||+|||.||||++++|.+++|+|||+|||||
T Consensus 104 mr~a~~~~G~dp~~i~p~vpvdlviDHsv~~d~~~~~da~~~n~~~e~~rN~er~~fLkw~~~~f~~~~v~pPg~GI~Hq 183 (888)
T PRK09277 104 MRDAIADLGGDPAKINPLVPVDLVIDHSVQVDYFGTPDAFEKNVELEFERNEERYQFLKWGQKAFDNFRVVPPGTGICHQ 183 (888)
T ss_pred HHHHHHHcCCChhhcCCCCCeEEEeCCCCcCCCCCCcCHHHHHHHHHHHhCHHHHhHHHHHHHHhcCCCCCCCCCCccce
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhccccceeccC-CC--cccCCeEEecCCCcCCcCccccccccccHHHHHHHHccCceeecCCceEEEEEecccCCCcc
Q 003797 81 VNLEYLGRVVFNT-NG--MLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGVT 157 (795)
Q Consensus 81 v~~E~~a~~v~~~-~G--~~~P~~vvGtDSHT~~~GalG~la~GvGg~e~~~~m~g~~~~~~vPevv~V~l~G~l~~gVt 157 (795)
|++||||+||+.+ +| +++|+++|||||||||+||||+|||||||+|++++|+||++||++||||+|+|+|+|++|||
T Consensus 184 V~lE~la~vv~~~~~G~~~~~PdtlVGtDSHT~t~GalG~la~GVGg~Eaeaam~g~~~~~~vPevvgV~LtG~L~~gVt 263 (888)
T PRK09277 184 VNLEYLAPVVWTREDGELVAYPDTLVGTDSHTTMINGLGVLGWGVGGIEAEAAMLGQPSSMLIPEVVGVKLTGKLPEGVT 263 (888)
T ss_pred echhhcccceeecCCCceeeccceEEecCCCCCCCCcccccEEccCHHHHHHHHhcCcEEeeCCCEEEEEEEeecCCCcc
Confidence 9999999999976 77 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHhcCccceEEEEecCCCCCCChhhhhhhhccccccCCceeeecCCHHHHHHHhhcCCChhHHHHHHHH
Q 003797 158 ATDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVAMVEGY 237 (795)
Q Consensus 158 akDviL~i~~~l~~~G~~g~~vEf~G~gv~~Ls~~~R~TI~NMa~E~GA~~~~fp~D~~t~~YL~~~gr~~~~~~~~~~y 237 (795)
||||||+|+++||++|++||+|||+|||+++||+++|||||||++|+|||+||||+|++|++||+.|||++++++++++|
T Consensus 264 AkDliL~i~~~L~~~G~vgk~vEF~G~gv~~LS~~dRaTIaNMa~E~GAt~g~fp~De~T~~YL~~tgr~~~~v~~~e~y 343 (888)
T PRK09277 264 ATDLVLTVTEMLRKKGVVGKFVEFFGEGLASLSLADRATIANMAPEYGATCGFFPIDEETLDYLRLTGRDEEQVALVEAY 343 (888)
T ss_pred HhHHHHHHHHHhcccCcccEEEEEECcccccCCHHHHHHHhccchhhCceEEEecCChhHHHHHHhcCCChHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcccCCCCCCCCcccEEEEEECCCcccceecCCCCCCccccCccchhhhhhhcccccCCCCCCCccccccceeee
Q 003797 238 LRANKMFVDYNEPQQERVYSSYLELNLADVEPCISGPKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFS 317 (795)
Q Consensus 238 ~~~~~l~~~~~~~D~~a~Y~~vieiDLs~leP~vA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 317 (795)
.|++++|+. +|++|.|+++++||||+|+|+||||++|||++||+|+++.|.++++. +.+++ ..+.+
T Consensus 344 ~ka~~~~~~---~D~~a~Y~~vieiDLs~leP~VAgP~~P~~~v~v~e~~~~~~~~~~~--~~~~~---------~~~~~ 409 (888)
T PRK09277 344 AKAQGLWRD---PLEEPVYTDVLELDLSTVEPSLAGPKRPQDRIPLSDVKEAFAKSAEL--GVQGF---------GLDEA 409 (888)
T ss_pred HHHHhhhcc---CCCCCCEEEEEEEEccceeEecCCCCCcccCcChhhcCcchhhhchh--hhhhh---------hhhhh
Confidence 999999962 58899999999999999999999999999999999999887765321 11111 11234
Q ss_pred cCCCcccccCccEEEEEeecCCCCCChHHHHHHHHHHHHHHhCCCccCCceeEEEecCCHHHHHHHHHcChHHHHHhcCc
Q 003797 318 FHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGF 397 (795)
Q Consensus 318 ~~g~~~~l~~g~V~~a~IGSCTN~~~~dl~~aA~lLa~~A~~~G~kv~~~V~~~v~PgS~~V~~~l~~~Gl~~~l~~aGa 397 (795)
++|....+.||+|++|||||||||||||+|+||++|||||+++|+||+||||++|+|||++|++||+++||+++|+++||
T Consensus 410 ~~g~~~~l~~g~V~~a~IGSCTN~s~~dl~~AA~lLakkA~~kG~kv~p~Vk~~v~PGS~~V~~~l~~~Gl~~~l~~aGf 489 (888)
T PRK09277 410 EEGEDYELPDGAVVIAAITSCTNTSNPSVMIAAGLLAKKAVEKGLKVKPWVKTSLAPGSKVVTDYLEKAGLLPYLEALGF 489 (888)
T ss_pred hcCCCccccCCceEEEEEeCCCCCCcHhHHHHHHHHHHHHHhcCCccCCCeeEEEeCCCHHHHHHHHHCChHHHHHHcCC
Confidence 67888889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccCCccccCCCCCCChhhhccccCCceeEEEEeccCCCCCCCCCCccCCccccCHHHHHHHHHhCccccCCCCCCCc
Q 003797 398 HIVGYGCTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVDIDFDKEPIG 477 (795)
Q Consensus 398 ~i~~~gCg~CiG~~g~l~~~~~~~i~~~~~~~~~vss~NRNF~GR~g~~~~~~yLaSP~~vaA~AlaG~I~~d~~~~plg 477 (795)
.|++||||+|+||++++.++++++|.+|++++++|||+||||+||||+..+++|||||+|||||||+|+|++|+++||+|
T Consensus 490 ~i~~~GCg~CiG~~g~l~~~~~~~i~~~e~~~~~VsS~NRNFeGR~g~~~~~~yLaSP~lvaA~AlaG~I~~d~~~dplg 569 (888)
T PRK09277 490 NLVGYGCTTCIGNSGPLPPEIEKAINDNDLVVTAVLSGNRNFEGRIHPLVKANYLASPPLVVAYALAGTVDIDLEKDPLG 569 (888)
T ss_pred EEeCCCccccccCCCCCCchhhhhcccCCceeEEEeccCCCCCCCCCCCCCceEEcCHHHHHHHHHcCccccCCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCeeccccCCCChHHHHHHhhccCCccccccccccccCCCCCcccccCCCCCccccCCCCcccCCCCCCCcCCCCC
Q 003797 478 TTKDGKSVYFKDIWPTTEEIAEVVQSSVLPDMFKSTYEAITKGNPTWNQLSVPASKLYSWDPNSTYIHEPPYFKDMTMDP 557 (795)
Q Consensus 478 ~~~~G~~v~l~di~P~~~ei~~~~~~~~~p~~~~~~~~~~~~~~~~w~~l~~~~~~~~~w~~~st~i~~pp~~~~~~~~~ 557 (795)
++++|++|||+||||+.+|+++++.+.+++++|.+.|++++.+++.|++++++.++.|+||++||||++||||++++.++
T Consensus 570 ~~~~G~~v~l~diwP~~~ei~~~~~~~v~~~~f~~~y~~~~~~~~~w~~l~~~~~~~~~w~~~StyI~~pp~f~~~~~~~ 649 (888)
T PRK09277 570 TDKDGNPVYLKDIWPSDEEIDAVVAKAVKPEMFRKEYADVFEGDERWNAIEVPEGPLYDWDPDSTYIRNPPYFEGMLAEP 649 (888)
T ss_pred cCCCCCEeeccCCCCChHHHHHHHHccCCHHHhhhhcccccCCchhhccCCCCCCCccccCCCCCcccCCCCCCcccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988777
Q ss_pred CCCCCcccceEEeecCCCCCcCccccCCCCCCCChHhhHHHHcCCCcccccccccCCCChhhhccccccchhhhhhhcCC
Q 003797 558 PGAHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLLNG 637 (795)
Q Consensus 558 ~~~~~i~~~~vL~~~gd~itTD~I~PAG~i~~~s~a~~~L~~~g~~~~~~n~yg~rr~n~evm~rg~F~n~r~~n~~~~~ 637 (795)
.++.++.++|||+++||+||||||||||+|+++||||+||+++|+.++||||||+||||||||+||||+|+|++|+|+++
T Consensus 650 ~~~~~i~~arvL~~~gD~iTTDHISPAG~i~~~spag~yL~~~gv~~~dfnsygsrRgN~evm~RgtfaNir~~N~l~~g 729 (888)
T PRK09277 650 GPVRDIKGARVLALLGDSITTDHISPAGAIKADSPAGKYLLEHGVEPKDFNSYGSRRGNHEVMMRGTFANIRIRNEMVPG 729 (888)
T ss_pred CCCCCccCCEEEEEECCCCcccccCCCCCCCCCChHHHHHHHcCCChhhccccccccccchhhhheeccccchhhhcccC
Confidence 77899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccccCCCccccccchHHHHHHcCCCcEEEeCCccCCCCchhhhhhchhhcCeeEEEecchhHHhhhhhccCcccc
Q 003797 638 EVGPKTVHVPTGEKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIP 717 (795)
Q Consensus 638 ~~g~~t~~~p~~~~~~v~~~A~~y~~~~~~~iiVaG~NfG~GSSRE~Aa~a~~~lGv~aVIA~SFarI~~~Nlin~Gilp 717 (795)
.+|++|+++|+|+.++|||+|++|+++|+|+|||||+|||||||||||+|++++|||+||||+||+||||+||+||||||
T Consensus 730 ~egg~t~~~p~g~~~~i~daA~~y~~~g~~~iivag~nyG~GSSRe~Aa~~~~~lgi~avia~sf~rI~~~Nli~~Gilp 809 (888)
T PRK09277 730 VEGGYTRHFPEGEVMSIYDAAMKYKEEGTPLVVIAGKEYGTGSSRDWAAKGTRLLGVKAVIAESFERIHRSNLVGMGVLP 809 (888)
T ss_pred CccceEEECCCCcEeeHHHHHHHHHhcCCceEEEccCccCCCCcHHHHHHHHHHhCCcEEEEecHHHHHHhhHhhcCcce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCccchhhccCCCCeEEEEecCCccccCCCCceEEEE--cCCC--eEEEEEecCCCHHHHHHHHhcChHHHHHHHhh
Q 003797 718 LCFKAGEDADSLGLTGHERFSIDLPSKISEIRPGQDVTVT--TDSG--KSFTCTVRFDTEVELAYFDHGGILPFVIRNLI 793 (795)
Q Consensus 718 l~~~~~~~~~~l~~~~~~~~~idl~~~~~~~~~g~~v~v~--~~~g--~~~~~~~~~~t~~e~~~~~aGGll~~v~~~~~ 793 (795)
|+|+++++|++|+++++|+++|+... +++||++++++ ..+| ++|.++++++|+.|++||++||+||||+|+++
T Consensus 810 l~~~~~~~~~~lgl~g~e~~~i~~l~---~l~p~~~v~v~~~~~~G~~~~~~~~~r~dt~~Ei~y~~~GGiL~yv~r~~~ 886 (888)
T PRK09277 810 LQFKPGESRKTLGLDGTETFDIEGLE---DLKPGATVTVVITRADGEVVEFPVLCRIDTAVEVDYYRNGGILQYVLRDLL 886 (888)
T ss_pred eecCCcccHHHhCCCCCceEEEcCcc---cCCCCCEEEEEEEeCCCCEEEEEEEEecCCHHHHHHHHcCCHHHHHHHHHh
Confidence 99999999999999999999985332 48899888774 4566 78999999999999999999999999999998
Q ss_pred cC
Q 003797 794 KQ 795 (795)
Q Consensus 794 ~~ 795 (795)
++
T Consensus 887 ~~ 888 (888)
T PRK09277 887 AS 888 (888)
T ss_pred hC
Confidence 64
No 7
>TIGR02333 2met_isocit_dHY 2-methylisocitrate dehydratase, Fe/S-dependent. Members of this family appear in an operon for the degradation of propionyl-CoA via 2-methylcitrate. This family is homologous to aconitases A and B and appears to act the part as 2-methylisocitrate dehydratase, the enzyme after PrpD and before PrpB. In Escherichia coli, which lacks a member of this family, 2-methylisocitrate dehydratase activity was traced to aconitase B (TIGR00117) (PubMed:12473114).
Probab=100.00 E-value=2.5e-226 Score=1944.37 Aligned_cols=757 Identities=46% Similarity=0.803 Sum_probs=721.0
Q ss_pred ChHHHHhcCCCCCccCCCCceEEEecccccCCCCC-chhHHHHHHHHHHHHhhhhhhhhhhhccccCcceeeCCCCceec
Q 003797 1 MRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTR-SENAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGSGIVH 79 (795)
Q Consensus 1 ~r~~~~~~g~~~~~~~P~~pv~lviDH~v~~~~~~-~~~a~~~n~~~e~~rn~e~~~fl~~~~~~f~~~~~~~pg~GI~H 79 (795)
|||+++++|+||++|||.+|++|||||||++|.++ +.+++..|+.+||+||.|||+||||++++|+||+|+|||+||||
T Consensus 93 mr~a~~~~g~dp~~inp~vP~dlviDHsv~vd~~g~~~da~~~n~~~e~~rN~Ery~FLkwa~~af~~~~~~ppG~GI~H 172 (858)
T TIGR02333 93 LRDAIAEKGGDPAQVNPVVPTQLIVDHSLAVEYGGFDPDAFEKNRAIEDRRNEDRFHFINWTKTAFKNVDVIPAGNGIMH 172 (858)
T ss_pred hHHHHHHcCCChhhcCCCCCCeEEeCCcceeccCCCCcchhHHHHHHHHhhhHHHHHHHHHHHHHhCCcEEeCCCCCEee
Confidence 89999999999999999999999999999999999 79999999999999999999999999999999999999999999
Q ss_pred cchhccccceeccCCCcccCCeEEecCCCcCCcCccccccccccHHHHHHHHccCceeecCCceEEEEEecccCCCcchh
Q 003797 80 QVNLEYLGRVVFNTNGMLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGVTAT 159 (795)
Q Consensus 80 qv~~E~~a~~v~~~~G~~~P~~vvGtDSHT~~~GalG~la~GvGg~e~~~~m~g~~~~~~vPevv~V~l~G~l~~gVtak 159 (795)
||++||||+||+.++|+++|+++|||||||||+||||+|||||||+|++++|+||++||++||||+|+|+|+|++|||||
T Consensus 173 QV~lE~la~vv~~~~G~a~Pd~ivGTDSHT~~~GgLG~lg~GVGg~Ea~aamlg~p~~l~vPevIgV~LtG~L~~gVtak 252 (858)
T TIGR02333 173 QINLEKMSPVIQVKNGVAFPDTCVGTDSHTPHVDALGVIAIGVGGLEAETVMLGRASMMRLPDIVGVELTGKRQPGITAT 252 (858)
T ss_pred eEchhhccccccccCCcccCCeEEecCCCCCCCCccceeEecCCHHHHHHHHhCCeeeeeCCcEEEEEEEeecCCCCCHh
Confidence 99999999999988899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhcCccceEEEEecCCCCCCChhhhhhhhccccccCCceeeecCCHHHHHHHhhcCCChhHHHHHHHHHH
Q 003797 160 DLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVAMVEGYLR 239 (795)
Q Consensus 160 DviL~i~~~l~~~G~~g~~vEf~G~gv~~Ls~~~R~TI~NMa~E~GA~~~~fp~D~~t~~YL~~~gr~~~~~~~~~~y~~ 239 (795)
||||+|+++||++|++||+|||+|||+++||+++|||||||++|+|||+||||+|++|++||+.|||++++++++|+|.|
T Consensus 253 DliL~i~~~Lr~~Gvvgk~VEF~G~gv~~LS~~dRaTIaNMa~E~GAt~gifp~De~T~~YL~~tgR~~~~~~lve~y~k 332 (858)
T TIGR02333 253 DIVLALTEFLRKERVVSAYLEFFGEGARALTIGDRATISNMTPEYGATAAMFYIDEQTIDYLKLTGREPEQVKLVETYAK 332 (858)
T ss_pred HHHHHHHHHHhhcCccceEEEEeCCccccCCHHHHHHHhccchhhCceEEEECCChhHHHHHHhcCCchhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988999999999
Q ss_pred HhhhcccCCCCCCCCcccEEEEEECCCcccceecCCCCCCccccCccchhhhhhhcccccCCCCCCCccccccceeeecC
Q 003797 240 ANKMFVDYNEPQQERVYSSYLELNLADVEPCISGPKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFH 319 (795)
Q Consensus 240 ~~~l~~~~~~~D~~a~Y~~vieiDLs~leP~vA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 319 (795)
++++|++ +|++|.|+++++||||+|||+||+|++|||++|++|++..... .+ . .+ ...
T Consensus 333 ~~~l~~d---~d~~a~Y~~vieiDLs~leP~VAgP~~Pd~~vpl~e~~~~~~~-------~~-~---~~--------~~~ 390 (858)
T TIGR02333 333 AAGLWAD---SLKHAVYERVLEFDLSSVVRNMAGPSNPHARVPTSDLAARGIA-------GP-A---EE--------QPE 390 (858)
T ss_pred HHHhhcC---cCCCCCeEEEEEEEcccceecccCCCChhhcCCHHHhhhcccc-------cc-c---cc--------ccc
Confidence 9999964 5789999999999999999999999999999999998742110 00 0 00 012
Q ss_pred CCcccccCccEEEEEeecCCCCCChHHHHHHHHHHHHHHhCCCccCCceeEEEecCCHHHHHHHHHcChHHHHHhcCcEE
Q 003797 320 GQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHI 399 (795)
Q Consensus 320 g~~~~l~~g~V~~a~IGSCTN~~~~dl~~aA~lLa~~A~~~G~kv~~~V~~~v~PgS~~V~~~l~~~Gl~~~l~~aGa~i 399 (795)
| .+.||+|++|||||||||||||+|+||++|||+|+++|+||+||||++|+|||++|++||+++||+++|+++||.|
T Consensus 391 g---~l~~g~V~ia~IgSCTN~s~~d~~~aA~lLak~A~~~Glkv~p~Vk~~v~PGS~~V~~~l~~~Gl~~~L~~aGf~v 467 (858)
T TIGR02333 391 G---LMPDGAVIIAAITSCTNTSNPRNVVAAGLLARNANQLGLKRKPWVKTSFAPGSKVAQLYLEEAGLLPELEQLGFGI 467 (858)
T ss_pred C---cccCCceeEEEEECCCCCCCHhHHHHHHHHHHHHHhcCCCcCCCeeEEEeCCCHHHHHHHHHcCcHHHHHHcCCEE
Confidence 3 4789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCccccCCCCCCChhhhccccCCceeEEEEeccCCCCCCCCCCccCCccccCHHHHHHHHHhCccccCCCCCCCccC
Q 003797 400 VGYGCTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVDIDFDKEPIGTT 479 (795)
Q Consensus 400 ~~~gCg~CiG~~g~l~~~~~~~i~~~~~~~~~vss~NRNF~GR~g~~~~~~yLaSP~~vaA~AlaG~I~~d~~~~plg~~ 479 (795)
++||||+|+|++|++.+++++.|.+++++.++|||+||||+||||+..+.+|||||++||||||+|+|++|+++||||+|
T Consensus 468 ~~~GCg~CiG~~G~l~~~~~~~i~~~~~~~~~VsS~NRNF~GR~g~~~~~~yLASP~lVaA~AlaG~I~~d~~~dplg~~ 547 (858)
T TIGR02333 468 VAFACTTCNGMSGALDPVIQQEIIDRDLYATAVLSGNRNFDGRIHPYAKQAFLASPPLVVAYAIAGTIRFDIEKDVLGVD 547 (858)
T ss_pred eCCcchhccCcCCCCCcchhhhhcccCceeEEEeccCCCCCCCCCCCcceeEecCHHHHHHHHHhCceeeccCcCccccC
Confidence 99999999999999999999999999999999999999999999999989999999999999999999999999999999
Q ss_pred CCCCeeccccCCCChHHHHHHhhccCCccccccccccccCCCCCcccccCCCCCccccCCCCcccCCCCCCCcCCCCCCC
Q 003797 480 KDGKSVYFKDIWPTTEEIAEVVQSSVLPDMFKSTYEAITKGNPTWNQLSVPASKLYSWDPNSTYIHEPPYFKDMTMDPPG 559 (795)
Q Consensus 480 ~~G~~v~l~di~P~~~ei~~~~~~~~~p~~~~~~~~~~~~~~~~w~~l~~~~~~~~~w~~~st~i~~pp~~~~~~~~~~~ 559 (795)
++|++|||+||||+.+||++++...++|++|++.|++++.+++ ++++.+++|+||++||||++||||+.+ +.+
T Consensus 548 ~~G~~v~l~diwP~~~Ei~~~~~~~~~~~~f~~~y~~~~~~~~----~~~~~~~~~~w~~~Styi~~pp~f~~~---~~~ 620 (858)
T TIGR02333 548 ADGKPIRLKDIWPSDEEIDAVVAAAVKPEQFRKVYIPMFDLDD----TQSAVSPLYDWRPMSTYIRRPPYWEGA---LAG 620 (858)
T ss_pred CCCCeEeecCCCCChHHHHHHHHhccChhhhhhhccccccCCc----cccCcCCCccCCCCCceecCCCCccCC---CCc
Confidence 9999999999999999999999999999999999999988876 678888999999999999999999987 345
Q ss_pred CCCcccceEEeecCCCCCcCccccCCCCCCCChHhhHHHHcCCCcccccccccCCCChhhhccccccchhhhhhhcC--C
Q 003797 560 AHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLLN--G 637 (795)
Q Consensus 560 ~~~i~~~~vL~~~gd~itTD~I~PAG~i~~~s~a~~~L~~~g~~~~~~n~yg~rr~n~evm~rg~F~n~r~~n~~~~--~ 637 (795)
+.+|+++|+|+++||+||||||||||+|+++||||+||+++|+.+++||+||+||||||||+||||+|+|++|+|++ +
T Consensus 621 ~~~i~~arvL~~lgdsiTTDHISPAg~i~~~spAG~yL~~~Gv~~~~fnsyg~rRgN~~vm~rgtF~n~rl~N~l~~~~g 700 (858)
T TIGR02333 621 ERTLKGMRPLAILGDNITTDHLSPSNAILADSAAGEYLAKMGLPEEDFNSYATHRGDHLTAQRATFANPKLFNEMVKNDG 700 (858)
T ss_pred ccCccCcEeeeecCCCccccccCcCCCCCCCCchHHHHHHcCCChhhcccccccccchHHHhhcccccchhhhhhccccC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999997 3
Q ss_pred --CCCCcccccCCCccccccchHHHHHHcCCCcEEEeCCccCCCCchhhhhhchhhcCeeEEEecchhHHhhhhhccCcc
Q 003797 638 --EVGPKTVHVPTGEKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGI 715 (795)
Q Consensus 638 --~~g~~t~~~p~~~~~~v~~~A~~y~~~~~~~iiVaG~NfG~GSSRE~Aa~a~~~lGv~aVIA~SFarI~~~Nlin~Gi 715 (795)
.+|++|+|+|+|+.++|||+|++|+++|+|+|||||+|||||||||||+|++++|||+||||+||+|||++||+||||
T Consensus 701 ~~~~g~~t~~~p~g~~~~i~daA~~Y~~~g~p~iivag~nyG~GSSRe~Aa~~~~~lGv~avia~sf~rI~~~Nl~~~G~ 780 (858)
T TIGR02333 701 SVKQGSLARIEPEGKVTRMWEAIETYMNRKQPLIIIAGADYGQGSSRDWAAKGVRLAGVEAIVAEGFERIHRTNLVGMGV 780 (858)
T ss_pred ccccCceeEecCCCcEeeHHHHHHHHHHcCCeEEEEccCccCCCCcHHHHHHHHHHhCceEEEEccHHHHHHhhhhhcCc
Confidence 479999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCccchhhccCCCCeEEEEecCCccccCCCCceEEEE--cCCC--eEEEEEecCCCHHHHHHHHhcChHHHHHHH
Q 003797 716 IPLCFKAGEDADSLGLTGHERFSIDLPSKISEIRPGQDVTVT--TDSG--KSFTCTVRFDTEVELAYFDHGGILPFVIRN 791 (795)
Q Consensus 716 lpl~~~~~~~~~~l~~~~~~~~~idl~~~~~~~~~g~~v~v~--~~~g--~~~~~~~~~~t~~e~~~~~aGGll~~v~~~ 791 (795)
|||+|.+++++++|++++.|.++|. + +++||++++++ ..+| .+|.+.+++||+.|++||++||+||||+|+
T Consensus 781 lpl~f~~~~~~~~l~l~g~e~~~i~--~---~~~p~~~~~v~~~~~~g~~~~~~~~~r~dt~~ei~y~~~GgiL~~v~~~ 855 (858)
T TIGR02333 781 LPLEFKPGTNRHTLGLDGTETFDVV--G---EITPRADLTLVVTRKNGEKLEVPVTCRLDTAEEVSVYEAGGVLQRFAQD 855 (858)
T ss_pred ceEEeCCCCChhhcCCCCCeeEEec--c---CCCCCCeEEEEEEeCCCCEEEEEEEEEcCCHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999999999998883 2 47899988775 3677 689999999999999999999999999999
Q ss_pred hhc
Q 003797 792 LIK 794 (795)
Q Consensus 792 ~~~ 794 (795)
+++
T Consensus 856 ~~~ 858 (858)
T TIGR02333 856 FLE 858 (858)
T ss_pred hhC
Confidence 863
No 8
>COG1048 AcnA Aconitase A [Energy production and conversion]
Probab=100.00 E-value=1.4e-223 Score=1897.96 Aligned_cols=763 Identities=63% Similarity=1.041 Sum_probs=731.7
Q ss_pred ChHHHHhcCCCCCccCCCCceEEEecccccCCCCCchhHHHHHHHHHHHHhhhhhhhhhhhccccCcceeeCCCCceecc
Q 003797 1 MRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTRSENAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGSGIVHQ 80 (795)
Q Consensus 1 ~r~~~~~~g~~~~~~~P~~pv~lviDH~v~~~~~~~~~a~~~n~~~e~~rn~e~~~fl~~~~~~f~~~~~~~pg~GI~Hq 80 (795)
|||+++++|+||.++||.+|++|+|||++++|.++.++|+.+|+.+||+||.|||+||+|++++|+||+|+|||+|||||
T Consensus 95 mr~a~~~~g~dp~~inP~~pvdLviDHsv~vd~~g~~~a~~~n~~~e~~rN~ery~FL~w~~kaf~n~~vvPPGtGIiHQ 174 (861)
T COG1048 95 MRDAMVELGGDPAKINPVVPVDLVIDHSVQVDVGGDPDAFEKNVELEFERNGERYKFLKWAAKAFYNFRVVPPGTGIIHQ 174 (861)
T ss_pred HHHHHHHhcCChhhcCCCCcceeeecceeeeecCCChhhhhhhhhhHhhhhhHHHHHHHHHHHhcCCcEEECCCCceeee
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhccccceeccCCCcccCCeEEecCCCcCCcCccccccccccHHHHHHHHccCceeecCCceEEEEEecccCCCcchhh
Q 003797 81 VNLEYLGRVVFNTNGMLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGVTATD 160 (795)
Q Consensus 81 v~~E~~a~~v~~~~G~~~P~~vvGtDSHT~~~GalG~la~GvGg~e~~~~m~g~~~~~~vPevv~V~l~G~l~~gVtakD 160 (795)
||+||||++||..+|++||+|+|||||||||+||||+|||||||+|++++|+|||+||++|+||+|+|+|+|++||||||
T Consensus 175 VnLE~la~vv~~~~g~a~pdtlvGTDSHTtminGLGvLgwGVGGiEAeaaMlG~p~~~~iP~VvGVkLtGkl~~gvTatD 254 (861)
T COG1048 175 VNLEYLAKVVWAKPGVAYPDTLVGTDSHTTMIGGLGVLGWGVGGIEAEAAMLGQPWYMLIPEVVGVKLTGKLPEGVTATD 254 (861)
T ss_pred ehHhhhccceeccCcccccCceeeccCCCCCcCcceEEEeccchHHHHHHHcCCceEeeCCcEEEEEEeccCCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCccceEEEEecCCCCCCChhhhhhhhccccccCCceeeecCCHHHHHHHhhcCCChhHHHHHHHHHHH
Q 003797 161 LVLTVTQMLRKHGVVGKFVEFHGDGMGELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVAMVEGYLRA 240 (795)
Q Consensus 161 viL~i~~~l~~~G~~g~~vEf~G~gv~~Ls~~~R~TI~NMa~E~GA~~~~fp~D~~t~~YL~~~gr~~~~~~~~~~y~~~ 240 (795)
|||+|+++||++|++||||||||||+++||+++|+|||||++||||||||||.|++|++||+.|||.+++++++|+|+++
T Consensus 255 lvL~vt~~Lr~~gvVgkfVEFfG~Gv~~Ls~~dRaTI~NM~pEyGAT~g~FPiDe~tl~YL~~tgR~~~~i~lve~y~~~ 334 (861)
T COG1048 255 LVLTVTGMLRKKGVVGKFVEFFGPGVASLSLADRATIANMGPEYGATSGFFPIDEETLDYLRLTGRSEEQVALVEAYAKA 334 (861)
T ss_pred HHHHHHHHHHhcCccceEEEEECCchhhCCcccceeeeccccccccccccCCCCHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccCCCCCCCCcccEEEEEECCCcccceecCCCCCCccccCccchhhhhhhcccccCCCCCCCccccccceeeecCC
Q 003797 241 NKMFVDYNEPQQERVYSSYLELNLADVEPCISGPKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHG 320 (795)
Q Consensus 241 ~~l~~~~~~~D~~a~Y~~vieiDLs~leP~vA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g 320 (795)
|+||+.. +|++|+|+++++||||+|+|+||+|++||++++|++++++|.+.+.+.... ..+...|
T Consensus 335 ~~l~~~~--~~~~a~Y~~~lelDLS~v~p~lAGP~~P~~~v~l~~~~~~~~~~~~~~~~~-------------~~~~~~~ 399 (861)
T COG1048 335 QGLWYDP--ADKDAEYDKVLELDLSTVEPSLAGPKRPQDRVPLSEVAENFEKILREIEIK-------------RVYSLLG 399 (861)
T ss_pred hcccCCc--cccCCccceeEEEEhhhCcccccCCCChhhceEHHHHHHHHHHhhhhhhcc-------------ccccccc
Confidence 9999764 678999999999999999999999999999999999999988765432110 1133344
Q ss_pred CcccccCccEEEEEeecCCCCCChHHHHHHHHHHHHHHhCCCccCCceeEEEecCCHHHHHHHHHcChHHHHHhcCcEEe
Q 003797 321 QPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIV 400 (795)
Q Consensus 321 ~~~~l~~g~V~~a~IGSCTN~~~~dl~~aA~lLa~~A~~~G~kv~~~V~~~v~PgS~~V~~~l~~~Gl~~~l~~aGa~i~ 400 (795)
+ ++.+|+|+||+|||||||||||+++||++|||+|+++|+|++||||++|+|||++|.+||+++||+++|+++||.++
T Consensus 400 ~--~~~~g~V~iaaItSCTNtSnp~v~~aAgllak~a~~~Gl~v~p~VktslAPGS~vV~~yL~~~Gl~~~L~~lGf~iv 477 (861)
T COG1048 400 K--ELGDGKVVIAAITSCTNTSNPDVLIAAGLLAKKAVEKGLKVKPWVKTSVAPGSKVVTEYLEKAGLLPYLEKLGFNIV 477 (861)
T ss_pred c--cCCCCcEEEEEEeeccCCCCHHHHHHHHHHHhhHHhcccCCCCCeeEeeCCCcHHHHHHHHHcCCHHHHHhcCCEEe
Confidence 4 68899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCccccCCCCCCChhhhccccCCceeEEEEeccCCCCCCCCCCccCCccccCHHHHHHHHHhCccccCCCCCCCccCC
Q 003797 401 GYGCTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVDIDFDKEPIGTTK 480 (795)
Q Consensus 401 ~~gCg~CiG~~g~l~~~~~~~i~~~~~~~~~vss~NRNF~GR~g~~~~~~yLaSP~~vaA~AlaG~I~~d~~~~plg~~~ 480 (795)
++||+||||||++|+++++..|.+|++++++|+|+||||+||+||..+.+|||||++|+||||+|+|++|+++||+|.++
T Consensus 478 ~~gCttCIGnsg~L~~~i~~~I~~~~l~~~avlSgNRNFeGRi~p~~k~nyLaSP~LVvAyAlAG~i~~d~~~~~lg~~~ 557 (861)
T COG1048 478 GYGCTTCIGNSGPLPEEIEKAINDNDLVVTAVLSGNRNFEGRIGPLVKANYLASPPLVVAYALAGTINFDLTTDPLGTDN 557 (861)
T ss_pred ccccccccCCCCCCChhhhhccccCceEEEeeeccCCCCCcCCCChhhcccccCcHHHHHHHHhcccccCcccCccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeeccccCCCChHHHHHHhhccCCccccccccccccCCCCCcccccCCCCCccccCCCCcccCCCCCCCcCCCCCCCC
Q 003797 481 DGKSVYFKDIWPTTEEIAEVVQSSVLPDMFKSTYEAITKGNPTWNQLSVPASKLYSWDPNSTYIHEPPYFKDMTMDPPGA 560 (795)
Q Consensus 481 ~G~~v~l~di~P~~~ei~~~~~~~~~p~~~~~~~~~~~~~~~~w~~l~~~~~~~~~w~~~st~i~~pp~~~~~~~~~~~~ 560 (795)
+|++|||+||||+.+|+.+.+...+.+++|.+.|.++|. |+.++++.+++|.|++.||||++||||+.+...+.+
T Consensus 558 ~g~~v~l~diwP~~~ei~~~v~~~~~~e~f~~~y~~v~~----w~~~~~~~~~~y~w~~~styi~~pP~f~~~~~~~~~- 632 (861)
T COG1048 558 DGKPVYLKDIWPSTEEIAEAVGKAVKPEMFRKEYADVFK----WNAIEVPEGPLYDWPNISTYIRLPPFFDGMGAEPKP- 632 (861)
T ss_pred CCCceeeeccCCCcHHHHHHHhhccChhhhccccccccc----cccccCCCcCcccCCCcCccccCCCccccccccccc-
Confidence 999999999999999999999999999999999999998 999999999999999999999999999988765543
Q ss_pred CCcccceEEeecCCCCCcCccccCCCCCCCChHhhHHHHcCCCcccccccccCCCChhhhccccccchhhhhhhcCCCCC
Q 003797 561 HGVKDAYCLLNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGEVG 640 (795)
Q Consensus 561 ~~i~~~~vL~~~gd~itTD~I~PAG~i~~~s~a~~~L~~~g~~~~~~n~yg~rr~n~evm~rg~F~n~r~~n~~~~~~~g 640 (795)
|+++|+|+++||+||||||||||+|+++|||++||.++|+.+.|||+||+||||||||+|++|+|+|++|++.++ +|
T Consensus 633 --~~~~r~L~~~gD~iTTDHISPAg~i~~~spag~yl~~~gv~~~dfNsygsrrgnhevm~r~tfaNir~~n~~~~~-~g 709 (861)
T COG1048 633 --IKGARVLAKLGDSITTDHISPAGSIKADSPAGKYLYEHGVERIDFNSYGSRRGNHEVMMRGTFANIRIRNEMVPG-EG 709 (861)
T ss_pred --cccceeeeeecCccccCcccCCCCCCCCCccchhhhhcCCCcccccchhcccccHHHhhhhhhcccccccccccc-cC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999988 99
Q ss_pred CcccccCCCccccccchHHHHHHcCCCcEEEeCCccCCCCchhhhhhchhhcCeeEEEecchhHHhhhhhccCccccccc
Q 003797 641 PKTVHVPTGEKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCF 720 (795)
Q Consensus 641 ~~t~~~p~~~~~~v~~~A~~y~~~~~~~iiVaG~NfG~GSSRE~Aa~a~~~lGv~aVIA~SFarI~~~Nlin~Gilpl~~ 720 (795)
++|+++|+|+ |||+|++|++.++|+|||||+|||+||||||||+++++|||+||||+|||||||+||||||||||+|
T Consensus 710 g~t~~~p~g~---iydaa~~yk~~g~p~vvvaG~~YG~GSSRdwAAkg~~lLGv~AVIAeSFeRIHrSNLi~mGvLPLqf 786 (861)
T COG1048 710 GYTIHQPSGE---IYDAAMKYKEEGIPLVVVAGKNYGTGSSRDWAAKGPRLLGVKAVIAESFERIHRSNLIGMGVLPLQF 786 (861)
T ss_pred cceeecCCch---hHHHHHHHHHcCCCeEEEeeccCCCCchHHHHhhCchhcCeeeeeehhHHHHHHhhcccceeeeeec
Confidence 9999999998 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCccchhhccCCCCeEEEEecCCccccCCCCceEEEE--cCCC--eEEEEEecCCCHHHHHHHHhcChHHHHHHHhhc
Q 003797 721 KAGEDADSLGLTGHERFSIDLPSKISEIRPGQDVTVT--TDSG--KSFTCTVRFDTEVELAYFDHGGILPFVIRNLIK 794 (795)
Q Consensus 721 ~~~~~~~~l~~~~~~~~~idl~~~~~~~~~g~~v~v~--~~~g--~~~~~~~~~~t~~e~~~~~aGGll~~v~~~~~~ 794 (795)
++++++++|++++.+.+.|.+.+ .++|+.+++++ ..|| .++...++++|+.|++|+++||+|+|+++++++
T Consensus 787 ~~~~~~~~l~l~g~e~~~i~~~~---~~~p~~~~~v~~~~~dg~~~~~~~~~r~dt~~E~~y~k~GGiL~~v~~~~~~ 861 (861)
T COG1048 787 PNGETYDKLGLDGEETIDIGGLE---NLKPGATVTVTVTRGDGPVEEFPVLCRIDTAEEIEYYKAGGILNYVKRDLLK 861 (861)
T ss_pred cCCCChhhcCCCCceeEeecccc---cCCCCceEEEEEEcCCCceEEEeeeeecCCHHHHHHHHcCchHHHHHHHhhC
Confidence 99999999999998888887664 57888877665 4566 678899999999999999999999999999864
No 9
>TIGR01340 aconitase_mito aconitate hydratase, mitochondrial. This model represents mitochondrial forms of the TCA cycle enzyme aconitate hydratase, also known as aconitase and citrate hydro-lyase.
Probab=100.00 E-value=1.4e-167 Score=1456.43 Aligned_cols=657 Identities=30% Similarity=0.466 Sum_probs=557.6
Q ss_pred HHHhcCCCCCccCCCCceEEEecccccCCCCCchhHHHHHHHHHHHHhhhhhhhhhhhccccCcceeeCCCCceeccchh
Q 003797 4 AMNKLGSDSNKINPLVPVDLVIDHSVQVDVTRSENAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGSGIVHQVNL 83 (795)
Q Consensus 4 ~~~~~g~~~~~~~P~~pv~lviDH~v~~~~~~~~~a~~~n~~~e~~rn~e~~~fl~~~~~~f~~~~~~~pg~GI~Hqv~~ 83 (795)
.|+++|.+ + |..|+++++||++|++.... .++..+++||.|+|+|++|.+++| ||+|+|||+||||||++
T Consensus 72 ~f~~~g~~-~---v~~P~~v~~DH~~~~~~~~~-----~~~~~a~~~N~e~~~~lr~~a~~~-gi~~~~~g~GI~Hqv~~ 141 (745)
T TIGR01340 72 QFMTCGLP-Q---VAVPASIHCDHLIVGQKGGD-----KDLARAIATNKEVFDFLESAGKKY-GIGFWKPGSGIIHQIVL 141 (745)
T ss_pred HHHHcCCC-C---CCCCCeEEeCCCCccccCcc-----ccHHHHhHhHHHHHHHHHHHHHHC-CCEEECCCCCeeceEch
Confidence 35667763 4 44556899999999775442 457888999999999999999999 89999999999999999
Q ss_pred ccccceeccCCCcccCC-eEEecCCCcCCcCccccccccccHHHHHHHHccCceeecCCceEEEEEecccCCCcchhhHH
Q 003797 84 EYLGRVVFNTNGMLYPD-SVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGVTATDLV 162 (795)
Q Consensus 84 E~~a~~v~~~~G~~~P~-~vvGtDSHT~~~GalG~la~GvGg~e~~~~m~g~~~~~~vPevv~V~l~G~l~~gVtakDvi 162 (795)
|+ +++|+ ++|||||||||+||||+||||||++|++++|+|++|||++||+|+|+|+|+|++||||||||
T Consensus 142 E~----------~a~PG~~ivGtDSHT~t~GalG~la~GvG~td~a~~m~G~~~~~~vPe~i~V~l~G~l~~gVtaKDvi 211 (745)
T TIGR01340 142 EN----------YAFPGLMMLGTDSHTPNAGGLGTIAIGVGGADAVDALAGAPWELKAPKILGVKLTGKLNGWTSPKDII 211 (745)
T ss_pred hh----------ccCCCCeEEccCCCcccccchheeEeccCHHHHHHHHhCCeeeccCCcEEEEEEEeecCCCcCHHHHH
Confidence 95 55775 69999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCccceEEEEecCCCCCCChhhhhhhhccccccCCceeeecCCHHHHHHHhhcCCChhHHH-HHHHHHHHh
Q 003797 163 LTVTQMLRKHGVVGKFVEFHGDGMGELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVA-MVEGYLRAN 241 (795)
Q Consensus 163 L~i~~~l~~~G~~g~~vEf~G~gv~~Ls~~~R~TI~NMa~E~GA~~~~fp~D~~t~~YL~~~gr~~~~~~-~~~~y~~~~ 241 (795)
|+|+++|+++|++||+|||+|||+++||+++|||||||++|+|||+||||+|++|++||+.+||.+.... .++.|. .
T Consensus 212 L~ii~~l~~~G~~g~~vEf~G~gv~~Ls~~~R~Ti~NMa~E~GA~~gifp~De~T~~yL~~~gr~~~~~~~~~~~~~--~ 289 (745)
T TIGR01340 212 LKLAGLLTVRGGTGYIVEYFGPGVESLSCTGMATICNMGAEIGATTSIFPFNEAMSRYLKATNRAQIAEDAKTGQYS--F 289 (745)
T ss_pred HHHHHHhCcCCccceEEEEeCcccccCCHHHhhhhhhcccccCceeEEeCCChHHHHHHHhcCCchhhhHHHHHHHh--c
Confidence 9999999999999999999999999999999999999999999999999999999999999999875422 222222 1
Q ss_pred hhcccCCCCCCCCcccEEEEEECCCcccceecCCCCCCccccCccchhhhhhhcccccCCCCCCCccccccceeeecCCC
Q 003797 242 KMFVDYNEPQQERVYSSYLELNLADVEPCISGPKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHGQ 321 (795)
Q Consensus 242 ~l~~~~~~~D~~a~Y~~vieiDLs~leP~vA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~ 321 (795)
.+| .+|++|.|+++++||||+|||+||+|++|||++||+|+++.+.+ .|+
T Consensus 290 ~~~----~~D~~a~Y~~~i~iDls~leP~vA~P~~Pdn~~~v~e~~~~~~~--------------------------~g~ 339 (745)
T TIGR01340 290 FKL----KADEGAQYDELIEIDLSKLEPHINGPFTPDLSTPISKFKETVQK--------------------------NGW 339 (745)
T ss_pred ccc----cCCCCCCeEEEEEEEccceeEeecCCCChhcccChHHhCchhhh--------------------------cCC
Confidence 223 57999999999999999999999999999999999999865421 011
Q ss_pred cccccCccEEEEEeecCCCCCChHHHHHHHHHHHHHHhCCCccCCceeEEEecCCHHHHHHHHHcChHHHHHhcCcEEec
Q 003797 322 PAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVG 401 (795)
Q Consensus 322 ~~~l~~g~V~~a~IGSCTN~~~~dl~~aA~lLa~~A~~~G~kv~~~V~~~v~PgS~~V~~~l~~~Gl~~~l~~aGa~i~~ 401 (795)
+ .+|+|||||||||||++||+.||.+| |+|+ |++++++|+++|+|||++|+++|+++|++++|+++||.|.+
T Consensus 340 ~-----~~Id~a~IGSCTNgr~~Dl~~AA~il-k~a~--~~~v~~~v~~~v~PgS~~V~~~l~~~Gl~~~l~~aGa~v~~ 411 (745)
T TIGR01340 340 P-----EKLSAGLIGSCTNSSYEDMSRCASIV-KDAE--QAGLKPKSPFYVTPGSEQIRATLERDGILQTFEKFGGIVLA 411 (745)
T ss_pred C-----ceecEEEEEcCCCCCHHHHHHHHHHh-hhhh--hCCCCCCCCEEEECCCHHHHHHHHHCCcHHHHHHcCCEEeC
Confidence 1 24789999999999999987777665 5554 46678889999999999999999999999999999999999
Q ss_pred cCCccccCCCCCCChhhhccccCCceeEEEEeccCCCCCCCC-CCccCCccccCHHHHHHHHHhCccccCCCCCCCccCC
Q 003797 402 YGCTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRV-HPLTRANYLASPPLVVAYALAGTVDIDFDKEPIGTTK 480 (795)
Q Consensus 402 ~gCg~CiG~~g~l~~~~~~~i~~~~~~~~~vss~NRNF~GR~-g~~~~~~yLaSP~~vaA~AlaG~I~~d~~~~plg~~~ 480 (795)
||||+|+|+++.+. .+.+|+.+ ++|||+||||+||| |...+.+|||||++||||||+|+|++|+++||| +++
T Consensus 412 ~gCg~CiG~~~~~~-----~~~~ge~~-~~vst~NRNF~GR~~g~~~~~~yLaSP~~vaAsAlaG~i~~d~~~dpl-~~~ 484 (745)
T TIGR01340 412 NACGPCIGQWDRKD-----DVKKGEPN-TILTSYNRNFRGRNDGNPATMNFLASPEIVTAMSYAGSLTFNPLTDSL-TTP 484 (745)
T ss_pred CCccccccCCCCcC-----ccCCCCce-EEEEecCCCCCcCCCCCCCceEEECCHHHHHHHHhhceeecCcccCcc-cCC
Confidence 99999999986432 13456654 57899999999999 555678999999999999999999999999999 699
Q ss_pred CCCeeccccCCCChHHHHHHhhccCCccccccccccccCCCCCcccccCC--CCCccccCCCCcccCCCCCCCcCCCCCC
Q 003797 481 DGKSVYFKDIWPTTEEIAEVVQSSVLPDMFKSTYEAITKGNPTWNQLSVP--ASKLYSWDPNSTYIHEPPYFKDMTMDPP 558 (795)
Q Consensus 481 ~G~~v~l~di~P~~~ei~~~~~~~~~p~~~~~~~~~~~~~~~~w~~l~~~--~~~~~~w~~~st~i~~pp~~~~~~~~~~ 558 (795)
+|++|||+ ||+.+|+++. +| ...+..|+.+..+ .+..|+|+++||||++||+|+..
T Consensus 485 ~g~~v~l~--~p~~~e~~~~--------~~-------~~~~~~~~~~~~~~~~~~~~~~~p~s~~i~~~~~f~~~----- 542 (745)
T TIGR01340 485 DGKEFKFP--APKGDELPEK--------GF-------EAGRDTFQAPPGSPNPNVEVAVSPSSDRLQLLEPFEPW----- 542 (745)
T ss_pred CCCEeecC--CCCccccchh--------cc-------cCCccceeCCCCCCCCCceEEeCCCCCCCCCCCCCCCC-----
Confidence 99999999 7999998766 12 1235566665443 46789999999999999999643
Q ss_pred CCCCcccceEEeecCCCCCcCccccCCCCCCCChHhhHHHHcCCCcccccccccCCCChhhhccccccchhhhhhhcC--
Q 003797 559 GAHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLLN-- 636 (795)
Q Consensus 559 ~~~~i~~~~vL~~~gd~itTD~I~PAG~i~~~s~a~~~L~~~g~~~~~~n~yg~rr~n~evm~rg~F~n~r~~n~~~~-- 636 (795)
+..+++++|||+++||||||||||||| .||++|| +|.|++ .|.|..
T Consensus 543 ~~~~i~~a~vLlk~gd~iTTDHIsPAG---------~~L~~rg----------------------~~~~i~-~n~~~~~~ 590 (745)
T TIGR01340 543 NGKDLSGLRVLIKVTGKCTTDHISAAG---------PWLKYKG----------------------HLDNIS-NNTLIGAV 590 (745)
T ss_pred CcCCccCCeEEEEECCCcChhcccccc---------hhHhhcC----------------------Chhhhh-cceecccc
Confidence 457899999999999999999999997 4899754 444444 344431
Q ss_pred CCCCC--cccccCCCccccccchHHHHHHcCCCcEEEeCCccCCCCchhhhhhchhhcCeeEEEecchhHHhhhhhccCc
Q 003797 637 GEVGP--KTVHVPTGEKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMG 714 (795)
Q Consensus 637 ~~~g~--~t~~~p~~~~~~v~~~A~~y~~~~~~~iiVaG~NfG~GSSRE~Aa~a~~~lGv~aVIA~SFarI~~~Nlin~G 714 (795)
+.+++ .+.+.|+|+.++++++|++|++.++++|||||+||||||||||||+++++|||+||||+||+||||+||||||
T Consensus 591 n~~~~~~~~~~~~~g~~~~~~~~a~~~~~~~~~~iivaG~nyG~GSSRE~Aa~~~~~lGv~aVIA~SFaRI~~~Nlin~G 670 (745)
T TIGR01340 591 NAETGEVNKAYDLDGSKGTIPELARDWKARGQPWVVVAEHNYGEGSAREHAALEPRHLGGRIIITKSFARIHETNLKKQG 670 (745)
T ss_pred cccCCceeEEEcCCCCccchHHHHHHHHhCCccEEEEccccccCCCchHHHHHHHHHhCCcEEEEehHHHHHHhhhhhcC
Confidence 11222 4556689999999999999999998999999999999999999999999999999999999999999999999
Q ss_pred cccccccCccchhhccCCCCeEEEEe-cCCccccCCC---CceEEE--EcCCC--eEEEEEecCCCHHHHHHHHhcChHH
Q 003797 715 IIPLCFKAGEDADSLGLTGHERFSID-LPSKISEIRP---GQDVTV--TTDSG--KSFTCTVRFDTEVELAYFDHGGILP 786 (795)
Q Consensus 715 ilpl~~~~~~~~~~l~~~~~~~~~id-l~~~~~~~~~---g~~v~v--~~~~g--~~~~~~~~~~t~~e~~~~~aGGll~ 786 (795)
||||+|.++++++.+. .++++++. +. ++.| ++.+.+ ...+| .+|.+++++ |+.|++||++||+||
T Consensus 671 ilpl~~~~~~~~~~i~--~gd~~~~~~l~----~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~l-t~~E~~~~~aGGiLn 743 (745)
T TIGR01340 671 VLPLTFANEADYDKIQ--PGDEVATLNLY----EMLKNGGGGEVDLRVTKKNGKVFEIKLKHTV-SKDQIGFFKAGSALN 743 (745)
T ss_pred ceeEEecCCccHhhcC--CCCEEEEcChh----hccccCCCCeEEEEEEeCCCcEEEEEEEeeC-CHHHHHHHHcCCccc
Confidence 9999998888888764 45665553 33 3343 556664 33455 678888888 999999999999999
Q ss_pred HH
Q 003797 787 FV 788 (795)
Q Consensus 787 ~v 788 (795)
|+
T Consensus 744 y~ 745 (745)
T TIGR01340 744 LM 745 (745)
T ss_pred CC
Confidence 85
No 10
>PRK07229 aconitate hydratase; Validated
Probab=100.00 E-value=6.7e-156 Score=1352.15 Aligned_cols=600 Identities=34% Similarity=0.545 Sum_probs=522.6
Q ss_pred HHHHhcCCCCCccCCCCceEEEecccccCCCCCchhHHHHHHHHHHHHhhhhhhhhhhhccccCcceeeCCCCceeccch
Q 003797 3 DAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTRSENAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGSGIVHQVN 82 (795)
Q Consensus 3 ~~~~~~g~~~~~~~P~~pv~lviDH~v~~~~~~~~~a~~~n~~~e~~rn~e~~~fl~~~~~~f~~~~~~~pg~GI~Hqv~ 82 (795)
..++++|.+ +.++|.. + +++||++|.. +.+|.++|+|++|++++| +++|+|||+|||||++
T Consensus 44 ~~~~~~G~~-~~~~p~~-~-~~~DH~~~~~---------------~~~~~~~~~~l~~~a~~~-gi~~~~~g~GI~Hqv~ 104 (646)
T PRK07229 44 LQFEAMGLD-RVKTELS-V-QYVDHNLLQA---------------DFENADDHRFLQSVAAKY-GIYFSKPGNGICHQVH 104 (646)
T ss_pred HHHHHcCCC-cCCCCCe-E-EECCCCCCCC---------------ChhhHHHHHHHHHHHHHh-CCeEECCCCCCcceeh
Confidence 456788886 4466644 3 5899988775 267899999999999999 7999999999999999
Q ss_pred hccccceeccCCCcccCCeEEecCCCcCCcCccccccccccHHHHHHHHccCceeecCCceEEEEEecccCCCcchhhHH
Q 003797 83 LEYLGRVVFNTNGMLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGVTATDLV 162 (795)
Q Consensus 83 ~E~~a~~v~~~~G~~~P~~vvGtDSHT~~~GalG~la~GvGg~e~~~~m~g~~~~~~vPevv~V~l~G~l~~gVtakDvi 162 (795)
+|+|++ +| +++|||||||||+||||+||||||++|++++|+|+++||++||+|+|+|+|+|++||++||||
T Consensus 105 ~E~~a~-----PG----~~ivGtDSHT~~~GalG~la~GvG~~d~~~~m~~g~~~~~vPe~v~V~l~G~l~~gV~akDvi 175 (646)
T PRK07229 105 LERFAF-----PG----KTLLGSDSHTPTAGGLGMLAIGAGGLDVALAMAGGPYYLKMPKVVGVKLTGKLPPWVSAKDVI 175 (646)
T ss_pred hhhccC-----CC----CEEEeCCCCcCcCCcccccEEccCHHHHHHHHhcCcEEccCCCEEEEEEEccCCCCcCHHHHH
Confidence 996664 33 689999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCccceEEEEecCCCCCCChhhhhhhhccccccCCceeeecCCHHHHHHHhhcCCChhHHHHHHHHHHHhh
Q 003797 163 LTVTQMLRKHGVVGKFVEFHGDGMGELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVAMVEGYLRANK 242 (795)
Q Consensus 163 L~i~~~l~~~G~~g~~vEf~G~gv~~Ls~~~R~TI~NMa~E~GA~~~~fp~D~~t~~YL~~~gr~~~~~~~~~~y~~~~~ 242 (795)
|+|+++|+.+|++||+|||+|||+++||+++|||||||++|+|||+||||+|++|++||+.+||.+++.+
T Consensus 176 L~i~~~l~~~G~~g~~vEf~G~gv~~Ls~~~R~Ti~NM~~E~GA~~~if~~D~~t~~yL~~~gr~~~~~~---------- 245 (646)
T PRK07229 176 LELLRRLTVKGGVGKIIEYFGPGVATLSVPERATITNMGAELGATTSIFPSDERTREFLKAQGREDDWVE---------- 245 (646)
T ss_pred HHHHHHhCccCccceEEEEECcccccccHHHHhhhhccccccCceEEEecCcHHHHHHHHhcCCccccee----------
Confidence 9999999999999999999999999999999999999999999999999999999999999998765421
Q ss_pred hcccCCCCCCCCcccEEEEEECCCcccceecCCCCCCccccCccchhhhhhhcccccCCCCCCCccccccceeeecCCCc
Q 003797 243 MFVDYNEPQQERVYSSYLELNLADVEPCISGPKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHGQP 322 (795)
Q Consensus 243 l~~~~~~~D~~a~Y~~vieiDLs~leP~vA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~ 322 (795)
+ .+|++|.|+++++||||+|||+||+|++|||++||+|+++.
T Consensus 246 -l----~~D~~a~Y~~~i~iDLs~leP~va~P~~Pd~~~pv~e~~~~--------------------------------- 287 (646)
T PRK07229 246 -L----LADPDAEYDEVIEIDLSELEPLIAGPHSPDNVVPVSEVAGI--------------------------------- 287 (646)
T ss_pred -c----cCCCCCCeeEEEEEEccceeeeeecCCCccceeEhHHhCCC---------------------------------
Confidence 1 47999999999999999999999999999999999998631
Q ss_pred ccccCccEEEEEeecCCCCCChHHHHHHHHHHHHHHhCCCccCCceeEEEecCCHHHHHHHHHcChHHHHHhcCcEEecc
Q 003797 323 AELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGY 402 (795)
Q Consensus 323 ~~l~~g~V~~a~IGSCTN~~~~dl~~aA~lLa~~A~~~G~kv~~~V~~~v~PgS~~V~~~l~~~Gl~~~l~~aGa~i~~~ 402 (795)
+|++||||||||||++||++||++| +|+||+++||++|+|||++|+++|+++|++++|+++||+|.+|
T Consensus 288 ------~I~~a~IGSCTN~~~~Dl~~aA~iL------~G~~v~~~v~~~v~PgS~~V~~~l~~~Gl~~~l~~aGa~i~~~ 355 (646)
T PRK07229 288 ------KVDQVLIGSCTNSSYEDLMRAASIL------KGKKVHPKVSLVINPGSRQVLEMLARDGALADLIAAGARILEN 355 (646)
T ss_pred ------eEEEEEEecCCCCChHHHHHHHHHh------cCCCCCCCeeEEEeCCCHHHHHHHHHCCcHHHHHHcCCEEeCC
Confidence 3789999999999999999999999 8999999999999999999999999999999999999999999
Q ss_pred CCccccCCCCCCChhhhccccCCceeEEEEeccCCCCCCCCCCccCCccccCHHHHHHHHHhCccccCCCCCCCccCCCC
Q 003797 403 GCTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVDIDFDKEPIGTTKDG 482 (795)
Q Consensus 403 gCg~CiG~~g~l~~~~~~~i~~~~~~~~~vss~NRNF~GR~g~~~~~~yLaSP~~vaA~AlaG~I~~d~~~~plg~~~~G 482 (795)
|||+|+|+++. +. ++++ +|||+||||+||||+..+.+|||||++||||||+|+|+ |+.++|++. |
T Consensus 356 gCg~CiG~g~~-~~-------~~~~---~vst~NRNF~GR~G~~~~~~yLaSP~~vaAsA~~G~i~-dp~~~~~~~---g 420 (646)
T PRK07229 356 ACGPCIGMGQA-PA-------TGNV---SLRTFNRNFPGRSGTKDAQVYLASPETAAASALTGVIT-DPRTLALEN---G 420 (646)
T ss_pred CccccccCCCC-CC-------CCcE---EEEccCCCCCccCCCCCCeEEECCHHHHHHHHhcCccC-Chhhccccc---C
Confidence 99999998543 22 3454 78999999999999988899999999999999999999 999999977 8
Q ss_pred CeeccccCCCChHHHHHHhhccCCccccccccccccCCCCCcccccCCCCCccccCCCCcccCCCCCCCcCCCCCCCCCC
Q 003797 483 KSVYFKDIWPTTEEIAEVVQSSVLPDMFKSTYEAITKGNPTWNQLSVPASKLYSWDPNSTYIHEPPYFKDMTMDPPGAHG 562 (795)
Q Consensus 483 ~~v~l~di~P~~~ei~~~~~~~~~p~~~~~~~~~~~~~~~~w~~l~~~~~~~~~w~~~st~i~~pp~~~~~~~~~~~~~~ 562 (795)
++++|+ ||+. +.++..+|.. .++.|.+++++ .++||+++|+|+++ .+
T Consensus 421 ~~~~~~--~p~~--------~~~~~~~~~~-------~~~~~~~~~~~---------~~p~~~~~~~~~~~-------~~ 467 (646)
T PRK07229 421 EYPKLE--EPEG--------FAVDDAGIIA-------PAEDGSDVEVV---------RGPNIKPLPLLEPL-------PD 467 (646)
T ss_pred Ccceec--CCcc--------ccCChhhhcC-------CCccccccccc---------CCCCCCCCccCCCC-------Cc
Confidence 999996 6772 1233344322 34567666554 45788888888654 47
Q ss_pred cccceEEeecCCCCCcCccccCCCCCCCChHhhHHHHcCCCcccccccccCCCChhhhccccccchhhhhhhcCCCCCCc
Q 003797 563 VKDAYCLLNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGEVGPK 642 (795)
Q Consensus 563 i~~~~vL~~~gd~itTD~I~PAG~i~~~s~a~~~L~~~g~~~~~~n~yg~rr~n~evm~rg~F~n~r~~n~~~~~~~g~~ 642 (795)
+.++++|+++|||||||||||+|+ +||++ |+|++.|.+++|.+.+ |.|
T Consensus 468 ~~~~~vl~~~gd~i~TD~I~Pa~~--------~~l~~--------------r~~~~~l~~~~f~~~~--~~f-------- 515 (646)
T PRK07229 468 LLEGKVLLKVGDNITTDHIMPAGA--------KWLPY--------------RSNIPNISEFVFEGVD--NTF-------- 515 (646)
T ss_pred CceEEEEEEcCCCCChhccCcCCc--------chhcc--------------CCCHHHHHHHHhccCC--hhh--------
Confidence 999999999999999999999862 47763 6899999999998532 222
Q ss_pred ccccCCCccccccchHHHHHHcCCCcEEEeCCccCCCCchhhhhhchhhcCeeEEEecchhHHhhhhhccCccccccccC
Q 003797 643 TVHVPTGEKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKA 722 (795)
Q Consensus 643 t~~~p~~~~~~v~~~A~~y~~~~~~~iiVaG~NfG~GSSRE~Aa~a~~~lGv~aVIA~SFarI~~~Nlin~Gilpl~~~~ 722 (795)
+.+++..+ ++|||||+|||||||||||||+++++||+||||+||+|||||||+|+|||||+|.+
T Consensus 516 ---------------~~~~~~~~-~~iiVaG~nfG~GSSRE~Aa~a~~~lGv~aVIA~SFarIf~~N~in~Gllpl~~~~ 579 (646)
T PRK07229 516 ---------------PERAKEQG-GGIVVGGENYGQGSSREHAALAPRYLGVKAVLAKSFARIHKANLINFGILPLTFAD 579 (646)
T ss_pred ---------------hHHHHhcC-CcEEEecCccCCCCchHHHHHHHHHHCCCEEEEeCHHHHHHhhHHhcCCceEEecC
Confidence 23566555 78999999999999999999999999999999999999999999999999999987
Q ss_pred ccchhhccCCCCeEEEE-ecCCccccCCCCceEEEEc-CCCeEEEEEecCCCHHHHHHHHhcChHHHHHHHhh
Q 003797 723 GEDADSLGLTGHERFSI-DLPSKISEIRPGQDVTVTT-DSGKSFTCTVRFDTEVELAYFDHGGILPFVIRNLI 793 (795)
Q Consensus 723 ~~~~~~l~~~~~~~~~i-dl~~~~~~~~~g~~v~v~~-~~g~~~~~~~~~~t~~e~~~~~aGGll~~v~~~~~ 793 (795)
+++++.+ ..+++++| |+.+ +.++.+|++.. .+|++|.++.++ ++.|++|+++||+|||+++++.
T Consensus 580 ~~~~~~l--~~gd~i~i~dl~~----~~~~~~v~v~~~~~~~~~~~~~~l-~~~e~~i~~aGGll~~~~~~~~ 645 (646)
T PRK07229 580 PADYDKI--EEGDVLEIEDLRE----FLPGGPLTVVNVTKDEEIEVRHTL-SERQIEILLAGGALNLIKKKLA 645 (646)
T ss_pred hHhHhhc--CCCCEEEEccchh----cCCCCeEEEEEecCCEEEEEEccC-CHHHHHHHHcCCHHHHHHHhcc
Confidence 7778875 45788898 6653 45566656543 456889988777 8999999999999999999864
No 11
>TIGR01342 acon_putative aconitate hydratase, putative, Aquifex type. This model represents a small family of proteins homologous (and likely functionally equivalent to) aconitase 1. Members are found, so far in the anaerobe Clostridium acetobutylicum, in the microaerophilic, early-branching bacterium Aquifex aeolicus, and in the halophilic archaeon Halobacterium sp. NRC-1. No member is experimentally characterized.
Probab=100.00 E-value=1.6e-154 Score=1337.92 Aligned_cols=607 Identities=32% Similarity=0.495 Sum_probs=515.4
Q ss_pred HHHhcCCCCCccCCCCceEEEecccccCCCCCchhHHHHHHHHHHHHhhhhhhhhhhhccccCcceeeCCCCceeccchh
Q 003797 4 AMNKLGSDSNKINPLVPVDLVIDHSVQVDVTRSENAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGSGIVHQVNL 83 (795)
Q Consensus 4 ~~~~~g~~~~~~~P~~pv~lviDH~v~~~~~~~~~a~~~n~~~e~~rn~e~~~fl~~~~~~f~~~~~~~pg~GI~Hqv~~ 83 (795)
.|+++|.+ + +.|.+ +.+++||++|+.. .||.++|+|++|.+++| ++.|++||+||||||++
T Consensus 42 ~~~~~g~~-~-v~~~~-~~~~~DH~~~~~d---------------~~~a~~~~~l~~~a~~~-gi~~~~pg~GI~Hqv~~ 102 (658)
T TIGR01342 42 EFEALEMD-E-VKTEL-AAQYCDHNMLQFD---------------FKNADDHKFLMSAAGKF-GAWFSKPGNGICHNVHK 102 (658)
T ss_pred HHHHcCCC-c-cCCCC-eEEECCCCCCCCC---------------hhhHHHHHHHHHHHHHh-CCeEECCCCCEEeeEch
Confidence 46677763 4 45766 8899999998842 25779999999999999 57899999999999999
Q ss_pred ccccceeccCCCcccCCeEEecCCCcCCcCccccccccccHHHHHHHHccCceeecCCceEEEEEecccCCCcchhhHHH
Q 003797 84 EYLGRVVFNTNGMLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGVTATDLVL 163 (795)
Q Consensus 84 E~~a~~v~~~~G~~~P~~vvGtDSHT~~~GalG~la~GvGg~e~~~~m~g~~~~~~vPevv~V~l~G~l~~gVtakDviL 163 (795)
|+|++ +| +++|||||||||+||||+||||||++|++++|+||++||++||+|+|+|+|+|++||++|||||
T Consensus 103 E~~a~-----PG----~~ivGtDSHT~t~GalG~la~GvG~td~a~~matg~~~~~vPe~i~V~l~G~l~~gV~aKDviL 173 (658)
T TIGR01342 103 ENFAA-----PG----KTLLGSDSHTPTAGGLGMLAIGAGGIDIAAAMAGEAFYLEMPEIVGVHLEGELPEWATAKDIIL 173 (658)
T ss_pred hhccC-----CC----CEEEecCcCcCCCCcccccEEccCHHHHHHHHhCCcEEccCCcEEEEEEecccCCCcCHHHHHH
Confidence 96654 33 6899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCccceEEEEecCCCCCCChhhhhhhhccccccCCceeeecCCHHHHHHHhhcCCChhHHHHHHHHHHHhhh
Q 003797 164 TVTQMLRKHGVVGKFVEFHGDGMGELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVAMVEGYLRANKM 243 (795)
Q Consensus 164 ~i~~~l~~~G~~g~~vEf~G~gv~~Ls~~~R~TI~NMa~E~GA~~~~fp~D~~t~~YL~~~gr~~~~~~~~~~y~~~~~l 243 (795)
+|+++|+.+|++||+|||+|||+++||+++|||||||++|+|||+||||+|++|++||+.++|.+++..
T Consensus 174 ~i~~~l~~~G~~g~~vEf~G~gv~~Ls~~~R~Ti~NM~~E~GA~~~if~~D~~t~~yl~~~~r~~~~~~----------- 242 (658)
T TIGR01342 174 ELLRRLSVKGGLGKIFEYFGEGVEELSVPERATITNMGAELGATSSIFPSDDITEAWLAAFDREDDFVD----------- 242 (658)
T ss_pred HHHHHhcccCcceEEEEEecCCcCccCHHHHhhhhccchhhCceEEEEcCcHHHHHHHHhcCCchheee-----------
Confidence 999999999999999999999999999999999999999999999999999999999999998665321
Q ss_pred cccCCCCCCCCcccEEEEEECCCcccceecCCCCCCccccCccchhhhhhhcccccCCCCCCCccccccceeeecCCCcc
Q 003797 244 FVDYNEPQQERVYSSYLELNLADVEPCISGPKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHGQPA 323 (795)
Q Consensus 244 ~~~~~~~D~~a~Y~~vieiDLs~leP~vA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~ 323 (795)
..+|++|.|+++++||||+|||+||+|++|||++||+|++. +
T Consensus 243 ----l~~D~~a~Y~~~i~iDls~leP~va~P~~Pd~v~~v~e~~g--------------~-------------------- 284 (658)
T TIGR01342 243 ----LLADADAEYADEIEIDLSDLEPLIAEPHMPDNVVPVREIAG--------------I-------------------- 284 (658)
T ss_pred ----ccCCCCCcEEEEEEEEccceeeeeeCCCCCCCeeEhHHhCC--------------c--------------------
Confidence 14899999999999999999999999999999999999862 1
Q ss_pred cccCccEEEEEeecCCCCCChHHHHHHHHHHHHHHhCCCccCCceeEEEecCCHHHHHHHHHcChHHHHHhcCcEEeccC
Q 003797 324 ELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGYG 403 (795)
Q Consensus 324 ~l~~g~V~~a~IGSCTN~~~~dl~~aA~lLa~~A~~~G~kv~~~V~~~v~PgS~~V~~~l~~~Gl~~~l~~aGa~i~~~g 403 (795)
+|+++|||||||||++||++||++| +|+||+|+||++|+|||++|+++|+++|++++|+++||+|.+||
T Consensus 285 -----~id~v~IGSCTn~~~~Dl~~aA~il------~G~~v~~~v~~~v~PgS~~V~~~~~~~G~~~~l~~aGa~i~~~g 353 (658)
T TIGR01342 285 -----EVDQVMIGSCTNGAFEDLLPAAKLL------EGREVHKDTEFAVAPGSKQALELIAQEGALAEFLAAGANFLEAA 353 (658)
T ss_pred -----eeeeEEEeCCCCCChHHHHHHHHHh------CCCccCCCccEEEeCCcHHHHHHHHHcCcHHHHHHcCCEEeCCC
Confidence 2678999999999999999999999 89999999999999999999999999999999999999999999
Q ss_pred CccccCCCCCCChhhhccccCCceeEEEEeccCCCCCCCCCCccCCccccCHHHHHHHHHhCccccCCCCCCCccCCCCC
Q 003797 404 CTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVDIDFDKEPIGTTKDGK 483 (795)
Q Consensus 404 Cg~CiG~~g~l~~~~~~~i~~~~~~~~~vss~NRNF~GR~g~~~~~~yLaSP~~vaA~AlaG~I~~d~~~~plg~~~~G~ 483 (795)
||+|+|+++.+. +++ ++|||+||||+||||+..+.+|||||++||||||+|+|+ |+.. ++ +.+|
T Consensus 354 Cg~CiG~~~~~~--------~~~---~~vst~NRNF~gR~G~~~~~~yLaSP~~vaAsA~~G~i~-dp~~--l~-~~~g- 417 (658)
T TIGR01342 354 CGACIGIGFAPA--------SDG---VSLRSFNRNFEGRAGIEDAKVYLASPETATAAAIAGEII-DPRD--LA-DDEG- 417 (658)
T ss_pred ccccccCCCCCC--------CCc---EEEEccCCCCCccCCCCCCeEEECCHHHHHHHHHcCCcC-CHHH--hc-cccC-
Confidence 999999965432 234 378999999999999988899999999999999999993 4432 22 1233
Q ss_pred eeccccC-CCChHHHHHHhhccCCccccccccccccCCCCCcccccC---CCCCccccCCCCcccCCCCCCCcCCCCCCC
Q 003797 484 SVYFKDI-WPTTEEIAEVVQSSVLPDMFKSTYEAITKGNPTWNQLSV---PASKLYSWDPNSTYIHEPPYFKDMTMDPPG 559 (795)
Q Consensus 484 ~v~l~di-~P~~~ei~~~~~~~~~p~~~~~~~~~~~~~~~~w~~l~~---~~~~~~~w~~~st~i~~pp~~~~~~~~~~~ 559 (795)
|+ ||+.++ |+.|...|+..+ |+.++. ++.+++ .+|||+++|+|++++
T Consensus 418 -----~~~~p~~~~----------p~~~~~~~~~~~-----~~~~~~~~~~~~~~~----~~p~i~~~p~~~~~~----- 468 (658)
T TIGR01342 418 -----DLEAIGFEM----------GEKFPGGYDAAD-----IDIIPKEEREDDDII----KGPNIKPLPEFDPLG----- 468 (658)
T ss_pred -----cccCCCCCC----------chhhcccccccc-----cccCCCCCCCCccee----eCCCCCCCCCCCCCc-----
Confidence 44 776552 344544444332 665544 333444 489999999998775
Q ss_pred CCCcccceEEeecCCCCCcCccccCCCCCCCChHhhHHHHcCCCcccccccccCCCChhhhccccccchhhhhhhcCCCC
Q 003797 560 AHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGEV 639 (795)
Q Consensus 560 ~~~i~~~~vL~~~gd~itTD~I~PAG~i~~~s~a~~~L~~~g~~~~~~n~yg~rr~n~evm~rg~F~n~r~~n~~~~~~~ 639 (795)
.++++ |++.++|||||||||+|||. .||.+ |+|.+.+.+.+|..++
T Consensus 469 -~~i~g-rv~~~~gDnI~TD~I~Pa~~--------~~l~~--------------r~~~~~l~~~~~~~~~---------- 514 (658)
T TIGR01342 469 -ADIEG-ETALIMEDNITTDHIIPAGA--------DILKF--------------RSNIEAISEFTLHRID---------- 514 (658)
T ss_pred -cccCc-eEEEEcCCCCChhcCCCCCc--------ccccc--------------CCCHHHHhhheeeCCC----------
Confidence 35665 99999999999999999874 24532 6677878888876321
Q ss_pred CCcccccCCCccccccchHHHHHHcCCCcEEEeCCccCCCCchhhhhhchhhcCeeEEEecchhHHhhhhhccCcccccc
Q 003797 640 GPKTVHVPTGEKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLC 719 (795)
Q Consensus 640 g~~t~~~p~~~~~~v~~~A~~y~~~~~~~iiVaG~NfG~GSSRE~Aa~a~~~lGv~aVIA~SFarI~~~Nlin~Gilpl~ 719 (795)
.+ +.+++++|++.+.++|||||+|||||||||||||++++|||+||||+||+||||+||+|+|||||+
T Consensus 515 ---------p~---f~~~~~~~~~~~~~~iiVaG~nfG~GSSREhAa~a~~~lGv~aVIA~SFarIf~~N~in~Gllpl~ 582 (658)
T TIGR01342 515 ---------DE---FAERAKAADEKGKAGIIIAGENYGQGSSREHAALAPMFLGVEAVIAKSFARIHHANLFNFGILPLE 582 (658)
T ss_pred ---------ch---HHHHhhcccccCCceEEEcCCcCCCCccHHHHHHHHHHHCCCEEEEecHHHHHHhhhhhcCcceEE
Confidence 11 235778898888899999999999999999999999999999999999999999999999999999
Q ss_pred ccCccchhhccCCCCeEEEEe--cCCccccCCCCceEEE-EcCCCeEEEEEecCCCHHHHHHHHhcChHHHHHHHhhcC
Q 003797 720 FKAGEDADSLGLTGHERFSID--LPSKISEIRPGQDVTV-TTDSGKSFTCTVRFDTEVELAYFDHGGILPFVIRNLIKQ 795 (795)
Q Consensus 720 ~~~~~~~~~l~~~~~~~~~id--l~~~~~~~~~g~~v~v-~~~~g~~~~~~~~~~t~~e~~~~~aGGll~~v~~~~~~~ 795 (795)
|+++++++.+. .+++++|+ +.+ .+.||++..+ +..+|.++.++..+ ++.|++|+++||+|||++++..+|
T Consensus 583 ~~d~~~~~~i~--~Gd~l~id~~l~~---~~~~g~~~~i~~~~~g~~~~~~~~l-~~~e~ei~~aGGlln~~~~~~~~~ 655 (658)
T TIGR01342 583 FDNEEDYAKFE--LGDDIEIPDDLAA---ALADGEDEFTINKNDDEEALATLDA-SEREKEILAAGGKLNLIKNKHREE 655 (658)
T ss_pred ecChhhHHHhC--CCCEEEECchhhh---hcCCCCceEEEEecCCeEEEEeCCC-CHHHHHHHHcCCHHHHHHHhhccc
Confidence 99888888764 36778887 554 4778864444 34566666666444 899999999999999999987653
No 12
>TIGR00139 h_aconitase homoaconitase. Homoaconitase, aconitase, and 3-isopropylmalate dehydratase have similar overall structures, but 3-isopropylmalate dehydratase is split into large (leuC) and small (leuD) chains in eubacteria. Several pairs of archaeal proteins resemble leuC and leuD over their lengths but are even closer to the respective domains of homoaconitase, and their identity is uncertain.
Probab=100.00 E-value=2.9e-141 Score=1225.04 Aligned_cols=623 Identities=26% Similarity=0.363 Sum_probs=476.9
Q ss_pred HHhcCCCCCccCCCCceEEEecccccCCCCCchhHHHHHHHHHHHHhhhhhhhhhhhccccCcceeeCCCCceeccchhc
Q 003797 5 MNKLGSDSNKINPLVPVDLVIDHSVQVDVTRSENAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLE 84 (795)
Q Consensus 5 ~~~~g~~~~~~~P~~pv~lviDH~v~~~~~~~~~a~~~n~~~e~~rn~e~~~fl~~~~~~f~~~~~~~pg~GI~Hqv~~E 84 (795)
+.++|. +++++|.+ +.+++||++|+.... .+..++.+++|+| +| +|+|+|||+|||||+++|
T Consensus 48 ~~~~g~-~~V~~p~~-~v~~~DH~v~~~~~~--~~~~~~~l~~fAk-------------k~-Gi~f~~~g~GI~Hqv~~E 109 (712)
T TIGR00139 48 FMGIGA-SKIHNPDQ-IVMTLDHDIQNKSDK--NLKKYKNIEEFAK-------------KH-GIDFYPAGRGIGHQIMIE 109 (712)
T ss_pred HHHcCC-CccCCCCC-EEEEcCCCCCCCCHH--HHHHHHHHHHHHH-------------Hh-CCeEECCCCCeEeEeecc
Confidence 457887 58899999 889999999997542 3334444454444 44 588899999999999999
Q ss_pred cccceeccCCCcccCC-eEEecCCCcCCcCccccccccccHHHHHHHHccCceeecCCceEEEEEecccCCCcchhhHHH
Q 003797 85 YLGRVVFNTNGMLYPD-SVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGVTATDLVL 163 (795)
Q Consensus 85 ~~a~~v~~~~G~~~P~-~vvGtDSHT~~~GalG~la~GvGg~e~~~~m~g~~~~~~vPevv~V~l~G~l~~gVtakDviL 163 (795)
+|+++|+ ++|||||||||+||||+||||||++|++++|+||++|++|||+|+|+|+|+|++||++|||||
T Consensus 110 ---------~g~a~PG~~ivGsDSHT~t~GalGala~GvG~tDva~amatg~~w~~vPe~v~V~ltG~L~~gV~aKDviL 180 (712)
T TIGR00139 110 ---------EGFAFPGNLAVASDSHSNMYGGLGCLGTPIVRTDAAAIWATGKTWWQIPPVAKVEFKGQLPPGVSGKDIIV 180 (712)
T ss_pred ---------cCcccCCeEEEccCcCcCccchhhheeeccchHHHHHHHhhCCEeccCCCEEEEEEecccCCCCCHHHHHH
Confidence 8899996 679999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCccceEEEEec--CCCCCCChhhhhhhhccccccCCceeeecCCHHHHHHHhhcCCChh--------HHHH
Q 003797 164 TVTQMLRKHGVVGKFVEFHG--DGMGELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDE--------TVAM 233 (795)
Q Consensus 164 ~i~~~l~~~G~~g~~vEf~G--~gv~~Ls~~~R~TI~NMa~E~GA~~~~fp~D~~t~~YL~~~gr~~~--------~~~~ 233 (795)
+|+++|+.+|++||+|||+| |||++||+++|||||||++|+|||+++||+|++|++||+.++|... ....
T Consensus 181 ~l~~~l~~~g~~g~~iEf~G~~~gv~~Ls~~~R~TI~NM~~E~GA~tgifp~De~t~~yL~~~~~~~~~~~~~~~~~~~~ 260 (712)
T TIGR00139 181 ALCGLFNKDDVLNHAIEFTGSEDSLNALPIDHRLTIANMTTEWGALSGLFPIDKTLIDWLKGKATLAALGLADGPFINPA 260 (712)
T ss_pred HHHHHhccCCcceEEEEEecCcchhhcCCHHHHhhHhhhhHhhCceeeEecCChHHHHHHHhcCcccccccccccccchh
Confidence 99999999999999999999 9999999999999999999999999999999999999999875311 0011
Q ss_pred HHHHHH---HhhhcccCCCCCCCCcccEEEEEECCCcccceecCCCCCCccccCccchhhhhhhcccccCCCCCCCcccc
Q 003797 234 VEGYLR---ANKMFVDYNEPQQERVYSSYLELNLADVEPCISGPKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQ 310 (795)
Q Consensus 234 ~~~y~~---~~~l~~~~~~~D~~a~Y~~vieiDLs~leP~vA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~ 310 (795)
.++|.+ +...| ....+|++|.|+++++||||+|+|+||+|++|++++||++++.. +
T Consensus 261 ~~r~~~~~~~~~~~-~~l~aD~~A~Y~~~~~iDLs~leP~vA~P~~p~~~~~v~el~~~------------~-------- 319 (712)
T TIGR00139 261 AERFTHPALEEKAE-IPLKADKDAHYAKELFIDLASLSHYVSGPNSVKVANPLKDLEAQ------------D-------- 319 (712)
T ss_pred HHHHHHHHHHHHhh-ccCCCCCCCCEEEEEEEEcccceeeeeCCCCCCCcCcHHHhhhc------------C--------
Confidence 112211 01111 12368999999999999999999999999999999999987410 1
Q ss_pred ccceeeecCCCcccccCccEEEEEeecCCCCCChHHHHHHHHHHHHHHhC---CCccCCceeEEEecCCHHHHHHHHHcC
Q 003797 311 EKVVKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACEL---GLQVKPWVKTSLAPGSGVVTKYLLQSG 387 (795)
Q Consensus 311 ~~~~~~~~~g~~~~l~~g~V~~a~IGSCTN~~~~dl~~aA~lLa~~A~~~---G~kv~~~V~~~v~PgS~~V~~~l~~~G 387 (795)
-+|++||||||||||++||++||++|+++|+++ |+||+|+|+++|+|||++|+++|+++|
T Consensus 320 -----------------~~Id~~~IGSCTN~r~~Dl~~AA~ilk~a~~~~gg~~rkV~p~V~~~v~PgS~~V~~~a~~~G 382 (712)
T TIGR00139 320 -----------------IKIDKAYLVSCTNSRASDIAAAADVFCEAADKNGGKINKIAPGVEFYIAAASIEEEAAAEGNG 382 (712)
T ss_pred -----------------ceeeeEEEecCCCCCcHHHHHHHHHHHhhhhhcCCcccccCCCceEEEeCCCHHHHHHHHHCC
Confidence 137799999999999999999999998888876 389999999999999999999999999
Q ss_pred hHHHHHhcCcEEeccCCccccCCCCCCChhhhccccCCceeEEEEeccCCCCCCCCCCccCCccccCHHHHHHHHHhCcc
Q 003797 388 LQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTV 467 (795)
Q Consensus 388 l~~~l~~aGa~i~~~gCg~CiG~~g~l~~~~~~~i~~~~~~~~~vss~NRNF~GR~g~~~~~~yLaSP~~vaA~AlaG~I 467 (795)
++++|++|||.|.+||||+|+|+++++.++ +++ +|||+||||+||||++.+.+|||||++||||||+|+|
T Consensus 383 l~~~l~~AGa~i~~~gCg~CiG~~~~~~~~-------gev---~isT~NRNF~GRmG~~~a~~YLaSP~~vAAsAl~G~I 452 (712)
T TIGR00139 383 AWEKLLEAGAIPLPAGCGPCIGLGAGLLEP-------GEV---GISASNRNFKGRMGSKDAKAYLASPAVVAASALLGKI 452 (712)
T ss_pred cHHHHHHcCCEEcCCccccccCcCCCCCCC-------CCE---EEEecCCCCCCCCCCCCCcEEECCHHHHHHHHhcCcc
Confidence 999999999999999999999999776544 454 6899999999999998899999999999999999999
Q ss_pred ccCCCCCCCccCCCCCeeccccCCCCh--H---HHHHHhhccCCccccccccccc---cCCCCCcccccCCCCCccccCC
Q 003797 468 DIDFDKEPIGTTKDGKSVYFKDIWPTT--E---EIAEVVQSSVLPDMFKSTYEAI---TKGNPTWNQLSVPASKLYSWDP 539 (795)
Q Consensus 468 ~~d~~~~plg~~~~G~~v~l~di~P~~--~---ei~~~~~~~~~p~~~~~~~~~~---~~~~~~w~~l~~~~~~~~~w~~ 539 (795)
+ ||..+.. + .-||.. . .+.......++.+++...-..+ ....+.-.+...+.
T Consensus 453 t-----dPr~~~~---~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 512 (712)
T TIGR00139 453 S-----GPAEVLS---P----EGWTEIIFGEGDGIKEEDRMLTNEEALEKIIGIIDDLVADEEKNAASEAPA-------- 512 (712)
T ss_pred C-----CHHHHhc---c----cccccccccccccccCcccccCcHHHHhhhhhhccCccccchhcccccccc--------
Confidence 6 5432210 0 001100 0 0000000011222221000000 00000001111110
Q ss_pred CCcccC--CCCCCCcCCCCCCCCCCcccceEEeecCCCCCcCccccCCCCCCCChHhhHHHHcCCCcccccccccCCCCh
Q 003797 540 NSTYIH--EPPYFKDMTMDPPGAHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGND 617 (795)
Q Consensus 540 ~st~i~--~pp~~~~~~~~~~~~~~i~~~~vL~~~gd~itTD~I~PAG~i~~~s~a~~~L~~~g~~~~~~n~yg~rr~n~ 617 (795)
+..+. ..|.+++ +.+....+++++.|||||||||+| ++||....++ .
T Consensus 513 -~~~~~~~~~~~~~~-------~~~~i~g~v~~~~gdnI~TD~I~P----------~~~~~~~~~~-------------~ 561 (712)
T TIGR00139 513 -QEESEQGLTEILEG-------FPEEFSGELVFCDADNINTDGIYP----------GKYTYQDDVP-------------K 561 (712)
T ss_pred -cchhccCCCCcCCC-------CCceEEEEEEEcCCCCCchhhccc----------hhhcccCCCC-------------H
Confidence 11111 2233333 335667899999999999999999 5788422122 2
Q ss_pred hhhccccccchhhhhhhcCCCCCCcccccCCCccccccchHHHHHHcCCCcEEEeCCccCCCCchhhhhhchhhcCeeEE
Q 003797 618 EVMARGTFANIRLVNKLLNGEVGPKTVHVPTGEKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLLGVKAV 697 (795)
Q Consensus 618 evm~rg~F~n~r~~n~~~~~~~g~~t~~~p~~~~~~v~~~A~~y~~~~~~~iiVaG~NfG~GSSRE~Aa~a~~~lGv~aV 697 (795)
+.|.++.|.+.+ | +++.+++. ++|||||+|||||||||||+|+++++||+||
T Consensus 562 ~~l~~~~~~~~d-----------------p--------~f~~~~~~---g~iiVaG~NfG~GSSREhA~~al~~~Gi~~V 613 (712)
T TIGR00139 562 EKMAQVCMENYD-----------------A--------EFRTKAHE---GDILVSGFNFGCGSSREQAATAILAKGINLV 613 (712)
T ss_pred HHHHHhhccCCC-----------------c--------chhhcCCC---CCEEEeCCccCCCCcHHHHHHHHHHcCCcEE
Confidence 355667776432 1 12334443 5799999999999999999999999999999
Q ss_pred EecchhHHhhhhhccCccccccccCccchhhcc---------C--CCCeEEEEecCCccccCCCCceEEEEcCC----Ce
Q 003797 698 IAKSFERIHRSNLVGMGIIPLCFKAGEDADSLG---------L--TGHERFSIDLPSKISEIRPGQDVTVTTDS----GK 762 (795)
Q Consensus 698 IA~SFarI~~~Nlin~Gilpl~~~~~~~~~~l~---------~--~~~~~~~idl~~~~~~~~~g~~v~v~~~~----g~ 762 (795)
||+||+|||+||++|+|||||+|++ ..+.|. + ..+++++||+.++ .|+. ..+ ++
T Consensus 614 iA~SFarIf~rN~iN~Gl~~l~~~~--~~~~l~~~~~~~~~~~~~~~Gd~l~vD~~~g--------~i~~-t~g~~~~~~ 682 (712)
T TIGR00139 614 VSGSFGNIFSRNSINNALLGLEIPA--LIKKLREKFGGADKELTRRTGWFLKWDVADA--------KIEV-QEGSLDGGP 682 (712)
T ss_pred EEchHHHHHHhHHHhcCCceEEchh--HHHHHHhhhcccccccccCCCCEEEEEccCC--------EEEE-CCCcccccc
Confidence 9999999999999999999999975 234432 1 1478899998864 3333 222 22
Q ss_pred EEEEEecCCCHHHHHHHHhcChHHHHHHHh
Q 003797 763 SFTCTVRFDTEVELAYFDHGGILPFVIRNL 792 (795)
Q Consensus 763 ~~~~~~~~~t~~e~~~~~aGGll~~v~~~~ 792 (795)
++.+++...+++.++|+++|||++|+|+++
T Consensus 683 ~~~~~~~~~p~~~~eii~~GGl~~~~k~~~ 712 (712)
T TIGR00139 683 ILEHKVGELGKNLQEIIAKGGLEGWVKNAI 712 (712)
T ss_pred eeEEEcCCCCHHHHHHHHcCCHHHHHHhcC
Confidence 233443334899999999999999999874
No 13
>PRK11413 putative hydratase; Provisional
Probab=100.00 E-value=7.5e-139 Score=1210.31 Aligned_cols=643 Identities=21% Similarity=0.278 Sum_probs=486.3
Q ss_pred HHHhcCCCCCccCCCCceEEEecccccCCCCCchhHHHHHHHHHHHHhhhhhhhhhhhccccCcceeeCCCCceeccchh
Q 003797 4 AMNKLGSDSNKINPLVPVDLVIDHSVQVDVTRSENAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGSGIVHQVNL 83 (795)
Q Consensus 4 ~~~~~g~~~~~~~P~~pv~lviDH~v~~~~~~~~~a~~~n~~~e~~rn~e~~~fl~~~~~~f~~~~~~~pg~GI~Hqv~~ 83 (795)
.++++|.+ + + | +|+.+++||++|+...++. |.++|.|++.++++| ++.|+|||+|||||+++
T Consensus 74 ~f~~~G~~-~-v-p-~~~v~~~DH~~~~~~g~~~-------------n~~~~~~~~~~a~k~-Gi~f~~pg~GI~Hqv~~ 135 (751)
T PRK11413 74 TAKASGME-R-F-P-LPYVLTNCHNSLCAVGGTI-------------NEDDHVFGLSAAQKY-GGIFVPPHIAVIHQYMR 135 (751)
T ss_pred HHHHcCCC-c-C-C-CCEEEECCCCCcCCCCCCc-------------cHHHHHHHHHHHHHc-CCcEECCCCCeECcCch
Confidence 46788874 3 4 5 6799999999999755432 334555555555566 46799999999999999
Q ss_pred ccccceeccCCCcccC-CeEEecCCCcCCcCccccccccccHHHHHHHHccCceeecCCceEEEEEecccCCCcchhhHH
Q 003797 84 EYLGRVVFNTNGMLYP-DSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGVTATDLV 162 (795)
Q Consensus 84 E~~a~~v~~~~G~~~P-~~vvGtDSHT~~~GalG~la~GvGg~e~~~~m~g~~~~~~vPevv~V~l~G~l~~gVtakDvi 162 (795)
|+|+ .| +++|||||||+ +||||+||||||++|++.+|+|++||+++||+|+|+|+|+|++||+|||||
T Consensus 136 E~~a----------~PG~~ivGtDSHT~-~GalG~la~GvGgtd~a~~mag~~~~~kvPe~i~V~LtG~l~~gV~aKDvi 204 (751)
T PRK11413 136 EMMA----------GGGKMILGSDSHTR-YGALGTMAVGEGGGELVKQLLNDTYDIDYPGVVAVYLTGKPAPGVGPQDVA 204 (751)
T ss_pred hhcc----------CCCcEEEeeCcCcc-cchhhhceeCCChHHHHHHHhCCeeeccCCCEEEEEEEeecCCCcCHHHHH
Confidence 9555 45 58999999996 899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCc-cceEEEEecCCCCCCChhhhhhhhccccccCCceeeecCCHHHHHHHhhcCCChhHHHHHHHHHHHh
Q 003797 163 LTVTQMLRKHGV-VGKFVEFHGDGMGELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVAMVEGYLRAN 241 (795)
Q Consensus 163 L~i~~~l~~~G~-~g~~vEf~G~gv~~Ls~~~R~TI~NMa~E~GA~~~~fp~D~~t~~YL~~~gr~~~~~~~~~~y~~~~ 241 (795)
|+|+++|+.+|+ +||+|||+||||++||+++|||||||++|+|||+||||+|++|++||+.++|.+++.+
T Consensus 205 L~ii~~l~~~G~v~~k~vEF~G~gv~~LS~~~R~TI~NM~~E~GA~~~ifp~De~t~~yL~~~gr~~~~~~--------- 275 (751)
T PRK11413 205 LAIIGAVFKNGYVKNKVMEFVGPGVSALSTDFRNGVDVMTTETTCLSSIWQTDEEVHNWLALHGRGQDYCE--------- 275 (751)
T ss_pred HHHHHHHhhcCcccceEEEEECCccccCCHhHHhhhhhcccccCceEEEecCcHHHHHHHHhCCChhhcee---------
Confidence 999999999999 6999999999999999999999999999999999999999999999999998765321
Q ss_pred hhcccCCCCCCCCcccEEEEEECCCcccceecCCCCCCccccCccchhhhhhhcccccCCCCCCCccccccceeeecCCC
Q 003797 242 KMFVDYNEPQQERVYSSYLELNLADVEPCISGPKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHGQ 321 (795)
Q Consensus 242 ~l~~~~~~~D~~a~Y~~vieiDLs~leP~vA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~ 321 (795)
..+|++|.|+++++||||+|+|+||+|++|+|++||+|+.+++.++++.. ..++... ..+...++..+
T Consensus 276 ------l~~D~~A~Yd~~ieiDLs~leP~VA~P~~Pdnv~~v~e~~~~~~~~~~~~-~~~~~~~----~~~~~~~~~~~- 343 (751)
T PRK11413 276 ------LNPQPMAYYDGCISVDLSAIKPMIALPFHPSNVYEIDELNQNLTDILREV-EIESERV----AHGKAKLSLLD- 343 (751)
T ss_pred ------ccCCCCCCeeEEEEEEcccceeeecCCCChhhCcChhhcccchhhhcchh-hhhhhhh----hhhhccccccc-
Confidence 14899999999999999999999999999999999999998888776542 1111100 00011111110
Q ss_pred ccccc--CccEEEEEeecCCCCCChHHHHHHHHHHHHHHhCCCccC-CceeEEEecCCHHHHHHHHHcChHHHHHhcCcE
Q 003797 322 PAELK--HGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVK-PWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFH 398 (795)
Q Consensus 322 ~~~l~--~g~V~~a~IGSCTN~~~~dl~~aA~lLa~~A~~~G~kv~-~~V~~~v~PgS~~V~~~l~~~Gl~~~l~~aGa~ 398 (795)
.+. .-+|+|||||||||||++||+.||++| +|++|+ ++||++|+|||++|+++|+++|++++|+++||.
T Consensus 344 --ki~~~~~~Idq~~IGSCTNg~~eDl~~AA~IL------kgk~v~~~~v~~~V~PgS~~V~~~l~~~G~~~~l~~AGa~ 415 (751)
T PRK11413 344 --KIENGRLKVQQGIIAGCSGGNYENVIAAANAL------RGQSCGNDTFSLSVYPSSQPVFMDLAKKGVVADLMGAGAI 415 (751)
T ss_pred --cccCCCcEeeeEEEecCCCCCHHHHHHHHHHh------cCcccCCCceeEEEECCCHHHHHHHHHcCcHHHHHHcCCE
Confidence 122 236899999999999999999999999 999998 569999999999999999999999999999999
Q ss_pred EeccCCccccCCCCCCChhhhccccCCceeEEEEeccCCCCCCCCCCccCC-----ccccCHHHHHHHHHh-CccccCCC
Q 003797 399 IVGYGCTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRA-----NYLASPPLVVAYALA-GTVDIDFD 472 (795)
Q Consensus 399 i~~~gCg~CiG~~g~l~~~~~~~i~~~~~~~~~vss~NRNF~GR~g~~~~~-----~yLaSP~~vaA~Ala-G~I~~d~~ 472 (795)
|.+||||+|+|+++. +. ++++ +|||+||||+||||++.++ +||+||+++||+|+. |+|+
T Consensus 416 i~~~gCgpCiG~~~~-~~-------~ge~---~isTsNRNF~GR~G~~~~~~ylasvyL~sp~~~Aasa~~gG~it---- 480 (751)
T PRK11413 416 IRTAFCGPCFGAGDT-PA-------NNGL---SIRHTTRNFPNREGSKPANGQMSAVALMDARSIAATAANGGYLT---- 480 (751)
T ss_pred ECCCchhhhhCcCCc-CC-------CCCE---EEeecCCCCCCCCCCccccceecccccCCHHHHHHHHHhCCccC----
Confidence 999999999998644 22 3454 7899999999999998886 778889999999999 6996
Q ss_pred CCCCccCCCCCeeccccCCCChHHHHHHhhccCCccccc-cccccccCCCCCcccccCCCCCccccCCCCcccCCCCCCC
Q 003797 473 KEPIGTTKDGKSVYFKDIWPTTEEIAEVVQSSVLPDMFK-STYEAITKGNPTWNQLSVPASKLYSWDPNSTYIHEPPYFK 551 (795)
Q Consensus 473 ~~plg~~~~G~~v~l~di~P~~~ei~~~~~~~~~p~~~~-~~~~~~~~~~~~w~~l~~~~~~~~~w~~~st~i~~pp~~~ 551 (795)
+|...+. ++ +.. .+.++..+|. ..|.......+ .+++.. +++|++.|-++
T Consensus 481 -~p~~~~~----------~~---~~p---~~~~~~~~y~~~~~~~~~~~~~---~~~~~~---------gPni~~~p~~~ 531 (751)
T PRK11413 481 -SATELDC----------WD---NVP---EYAFDVTPYKNRVYQGFGKGAT---QQPLIY---------GPNIKDWPEMG 531 (751)
T ss_pred -CHHHccc----------cc---cCC---CcccCccccccccccCCCCCCC---cceEEe---------CcCCCCCCCCC
Confidence 5543210 01 101 1234555553 33322111111 122221 22333333333
Q ss_pred cCCCCCCCCCCcccceEEeecCCCCC-cCccccCCCCCCCChHhhHHHHcCCCcccccccccCCCChhhhccccccchhh
Q 003797 552 DMTMDPPGAHGVKDAYCLLNFGDSIT-TDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRL 630 (795)
Q Consensus 552 ~~~~~~~~~~~i~~~~vL~~~gd~it-TD~I~PAG~i~~~s~a~~~L~~~g~~~~~~n~yg~rr~n~evm~rg~F~n~r~ 630 (795)
. +.+-..++|+.|+||||| ||||+||| +||.+ |||-+.+.+.+|.. .
T Consensus 532 ~-------l~~~~~~kv~~k~~D~itTTD~i~paG---------~~l~~--------------Rsn~~~is~~~~~~--~ 579 (751)
T PRK11413 532 A-------LTDNILLKVCSKILDPVTTTDELIPSG---------ETSSY--------------RSNPLGLAEFTLSR--R 579 (751)
T ss_pred C-------CCCcEEEEEEEEeCCCCccccccccCC---------Ccccc--------------ccCHHHHhhhhccc--c
Confidence 2 234567889999999997 99999997 47775 67777777777753 3
Q ss_pred hhhhcCCCCC--CcccccCCCccccccchHHHH--------------HHcCCCcEEEeCCccCCCCchhhhhhchhhcCe
Q 003797 631 VNKLLNGEVG--PKTVHVPTGEKLSVFDAAMKY--------------KSAGHGTIILAGAEYGSGSSRDWAAKGPMLLGV 694 (795)
Q Consensus 631 ~n~~~~~~~g--~~t~~~p~~~~~~v~~~A~~y--------------~~~~~~~iiVaG~NfG~GSSRE~Aa~a~~~lGv 694 (795)
.|.+...... .......+|. +.+.|+.| ++.+.+ +||+|.||||||||||||++|++|||
T Consensus 580 d~~~~~ra~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~iv~~~nyG~GSSREhAAla~r~LGi 655 (751)
T PRK11413 580 DPGYVGRSKAVAELENQRLAGN---VSELTEVFARIKQIAGQEHIDPLQTEIG-SMVYAVKPGDGSAREQAASCQRVLGG 655 (751)
T ss_pred ChhhHHHHHHHhhhhhhhhcCC---cHHHHHHHHhhhhccccccccccccCce-EEEEEeCCCCCccHHHHHHHHHHhCc
Confidence 3333210000 0000011222 22344444 455655 55556999999999999999999999
Q ss_pred eEEEecchhHH-hhhhhccCccccccccCccchhhccCCCCeEEEEecCCccccCCCC-c--eEEEEcCCC--eEEEEEe
Q 003797 695 KAVIAKSFERI-HRSNLVGMGIIPLCFKAGEDADSLGLTGHERFSIDLPSKISEIRPG-Q--DVTVTTDSG--KSFTCTV 768 (795)
Q Consensus 695 ~aVIA~SFarI-~~~Nlin~Gilpl~~~~~~~~~~l~~~~~~~~~idl~~~~~~~~~g-~--~v~v~~~~g--~~~~~~~ 768 (795)
+||||+||+|| ||+||||+|||||+|.+.. .+..++.++|+.... .+..+ . +..+...+| +.+.+++
T Consensus 656 ~AVIAkSFARIf~RsNlIN~GilpL~f~~~~-----~i~~GD~l~id~~~~--~l~~~~~~~~~~i~~~~~~~~~~~~~~ 728 (751)
T PRK11413 656 LANIAEEYATKRYRSNVINWGMLPFQMAEEP-----TFEVGDYIYIPGIRA--ALDNPGTTFKGYVIHEDAPVTEITLYM 728 (751)
T ss_pred eEEEEeeehHHHHhhhhhhcCccceecCchh-----hCCCCCEEEEechhh--hhhcCCCceeEEEEeCCCceeeEEEEe
Confidence 99999999999 5569999999999998642 356688899986532 23322 2 223333443 4455554
Q ss_pred cCCCHHHHHHHHhcChHHHHHHH
Q 003797 769 RFDTEVELAYFDHGGILPFVIRN 791 (795)
Q Consensus 769 ~~~t~~e~~~~~aGGll~~v~~~ 791 (795)
...++.|++||++||+|||++++
T Consensus 729 ~~l~~~~~eil~aGGllny~k~~ 751 (751)
T PRK11413 729 ESLTAEEREIIKAGCLINYNKNR 751 (751)
T ss_pred CCCCHHHHHHHHcCCHHHHhhcC
Confidence 23399999999999999999863
No 14
>KOG0453 consensus Aconitase/homoaconitase (aconitase superfamily) [Energy production and conversion; Amino acid transport and metabolism]
Probab=100.00 E-value=3.3e-132 Score=1094.98 Aligned_cols=665 Identities=31% Similarity=0.493 Sum_probs=547.5
Q ss_pred HHhcCCCCCccCCCCceEEEecccccCCCCCchhHHHHHHHHHHHHhhhhhhhhhhhccccCcceeeCCCCceeccchhc
Q 003797 5 MNKLGSDSNKINPLVPVDLVIDHSVQVDVTRSENAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLE 84 (795)
Q Consensus 5 ~~~~g~~~~~~~P~~pv~lviDH~v~~~~~~~~~a~~~n~~~e~~rn~e~~~fl~~~~~~f~~~~~~~pg~GI~Hqv~~E 84 (795)
++.|+.-.+++ .+|..++|||.+.+...+..| +.+.-+.|+|.|+||..+.++| +|.||+||+||+|||++|
T Consensus 104 LqFms~Gl~kv--avPstIhCdhli~a~~gg~~D-----l~~a~~~Nkevydfl~saakky-gi~Fw~pGsGIiHQIvlE 175 (778)
T KOG0453|consen 104 LQFMSSGLKKV--AVPSTIHCDHLIEAQVGGDKD-----LQRASDLNKEVYDFLESAAKKY-GIGFWKPGSGIIHQIVLE 175 (778)
T ss_pred HHHHhcCcccc--cCCceEEecceeeeccCCcch-----hhhhhhhhHHHHHHHHHHHHhc-CCCccCCCCceeeeeeee
Confidence 34454444433 367889999999998777544 5667789999999999999988 699999999999999999
Q ss_pred cccceeccCCCcccCC-eEEecCCCcCCcCccccccccccHHHHHHHHccCceeecCCceEEEEEecccCCCcchhhHHH
Q 003797 85 YLGRVVFNTNGMLYPD-SVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGVTATDLVL 163 (795)
Q Consensus 85 ~~a~~v~~~~G~~~P~-~vvGtDSHT~~~GalG~la~GvGg~e~~~~m~g~~~~~~vPevv~V~l~G~l~~gVtakDviL 163 (795)
+ ++||+ ++|||||||+++||||+|++||||+|++.+|+++||.++.|++++|+|+|+|+.|+++|||||
T Consensus 176 n----------YAfPG~m~igTDSHTpn~GGLG~l~igVggaDAvdvmA~~pWelk~PkvigV~LtG~l~gwtSpKDvIl 245 (778)
T KOG0453|consen 176 N----------YAFPGLMMIGTDSHTPNAGGLGCLAIGVGGADAVDVMATQPWELKCPKVIGVKLTGQLPGWTSPKDVIL 245 (778)
T ss_pred c----------ccCCcceEEeccCCCCCCCccceeeeccccchHHHHhcCCCceecCCceEEEEEeeecCCCCChhHHHH
Confidence 4 55785 789999999999999999999999999999999998899999999999999999999999999
Q ss_pred HHHHHHHhcCccceEEEEecCCCCCCChhhhhhhhccccccCCceeeecCCHHHHHHHhhcCCChhHHHHHHHHHHHhhh
Q 003797 164 TVTQMLRKHGVVGKFVEFHGDGMGELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVAMVEGYLRANKM 243 (795)
Q Consensus 164 ~i~~~l~~~G~~g~~vEf~G~gv~~Ls~~~R~TI~NMa~E~GA~~~~fp~D~~t~~YL~~~gr~~~~~~~~~~y~~~~~l 243 (795)
++.+.|..+|++|++||||||||.+||++.|+|||||++|.|||+|+||.|+++++||+.+||.+. .+..++|+++ +
T Consensus 246 klagiltvkggtg~iiEy~G~Gv~slSctgm~TIcNMgaEiGAtTs~FP~n~~m~~yL~atgr~~i-a~~a~~~~~~--~ 322 (778)
T KOG0453|consen 246 KLAGILTVKGGTGHIIEYFGPGVNSLSCTGMATICNMGAEIGATTSLFPYNERMIDYLQATGRNEI-AREARETLDA--I 322 (778)
T ss_pred hhhceeeecCccceeEEEecCccceeccccceeeccccccccccccccCCCHHHHHHHHHhCcccc-hhhhHHhhhh--c
Confidence 999999999999999999999999999999999999999999999999999999999999999865 3344555554 2
Q ss_pred cccCCCCCCCCcccEEEEEECCCcccceecCCCCCCccccCccchhhhhhhcccccCCCCCCCccccccceeeecCCCcc
Q 003797 244 FVDYNEPQQERVYSSYLELNLADVEPCISGPKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHGQPA 323 (795)
Q Consensus 244 ~~~~~~~D~~a~Y~~vieiDLs~leP~vA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~ 323 (795)
+ .+|++|.||++|+||||+|+|+|.+|++||-..|++++.+.. .. +|||.
T Consensus 323 l----~AD~~a~Ydk~ieIdLstL~P~vnGPfTpdl~~pvskl~e~~--------~k------------------n~wp~ 372 (778)
T KOG0453|consen 323 L----AADKGAHYDKIIEIDLSTLEPHVNGPFTPDLSTPVSKLGENS--------EK------------------NGWPI 372 (778)
T ss_pred c----cCCCCCCcceEEEEEhhhcccccCCCCCccccChHHHHhHHh--------hh------------------cCCce
Confidence 2 589999999999999999999999999999999999987521 11 34443
Q ss_pred cccCccEEEEEeecCCCCCChHHHHHHHHHHHHHHhCCCccCCceeEEEecCCHHHHHHHHHcChHHHHHhcCcEEeccC
Q 003797 324 ELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGYG 403 (795)
Q Consensus 324 ~l~~g~V~~a~IGSCTN~~~~dl~~aA~lLa~~A~~~G~kv~~~V~~~v~PgS~~V~~~l~~~Gl~~~l~~aGa~i~~~g 403 (795)
. |..++||||||+||+|+-.+|.++ ++|..+|+ ++.|.+.|+|||.+|+..+++.|++++|+++|+.+++++
T Consensus 373 ~-----i~~gligSCTNSsyeDm~raa~iv-~~a~~~gl--k~~v~F~VtpgSeqirAtierdG~~e~l~~~G~~vLana 444 (778)
T KOG0453|consen 373 K-----IKVGLIGSCTNSSYEDMSRAADIV-KQAKGKGL--KPKVPFYVTPGSEQIRATIERDGIWETLEKAGGIVLANA 444 (778)
T ss_pred e-----eeeeEEEeecCccHHHHHHHHHHH-HHHHhcCC--CCCcceEeccChHHhhhhHhhcchHHHHHhcCCEEcccC
Confidence 3 457899999999999988888765 88887775 566999999999999999999999999999999999999
Q ss_pred CccccCCCCCCChhhhccccCCceeEEEEeccCCCCCCCCCCcc-CCccccCHHHHHHHHHhCccccCCCCCCCccCCCC
Q 003797 404 CTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLT-RANYLASPPLVVAYALAGTVDIDFDKEPIGTTKDG 482 (795)
Q Consensus 404 Cg~CiG~~g~l~~~~~~~i~~~~~~~~~vss~NRNF~GR~g~~~-~~~yLaSP~~vaA~AlaG~I~~d~~~~plg~~~~G 482 (795)
||||||+|..- -|++||.- +.|+|+||||.|||+.+. ...||+||++|+|+||+|++.+++++|.+ .+++|
T Consensus 445 CGPCIGqw~r~------dvk~GE~n-tivts~NRNFtgRnd~np~t~afltSP~iVtA~aiaG~l~fnp~td~l-~~~dg 516 (778)
T KOG0453|consen 445 CGPCIGQWDRK------DIKKGEKN-TIVTSYNRNFTGRNDANPATHAFLTSPEIVTALAIAGDLSFNPETDSL-TAPDG 516 (778)
T ss_pred cCCcccccccc------cccCCCcC-ceeeeecccccccCCCCcchhhcccCHHHHHHHHHhccccCCCccccc-ccCCc
Confidence 99999998551 13455552 358999999999998765 56799999999999999999999999988 57789
Q ss_pred CeeccccCCCChHHHHHHhhccCCccccccccccccCCCCCcccccCCC-CCccccCCCCcccCCCCCCCcCCCCCCCCC
Q 003797 483 KSVYFKDIWPTTEEIAEVVQSSVLPDMFKSTYEAITKGNPTWNQLSVPA-SKLYSWDPNSTYIHEPPYFKDMTMDPPGAH 561 (795)
Q Consensus 483 ~~v~l~di~P~~~ei~~~~~~~~~p~~~~~~~~~~~~~~~~w~~l~~~~-~~~~~w~~~st~i~~pp~~~~~~~~~~~~~ 561 (795)
+.+.++. |..+|+.+ +.++|. ...|+. ++ .+. ..-+..||.|..++....|+. +...
T Consensus 517 ~~fk~~~--p~g~~lp~---~g~d~g--~~ty~a----p~------~~~~~~~v~v~p~s~rlqlLepF~~-----w~gk 574 (778)
T KOG0453|consen 517 KAFKLEP--PIGDELPK---KGFDPG--QDTYQA----PP------SSSSVVEVDVDPTSDRLQLLEPFDK-----WDGK 574 (778)
T ss_pred ccccccC--CcCCCCcc---cccCCC--cccccC----CC------CCCCcceeecCCcccchhhcCCCCc-----cccc
Confidence 9998875 67766543 223431 112221 11 111 123566788888877766653 4457
Q ss_pred CcccceEEeecCCCCCcCccccCCCCCCCChHhhHHHHcCCCcccccccccCCCChhhhccccccchhhhhhhcCCCCCC
Q 003797 562 GVKDAYCLLNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGEVGP 641 (795)
Q Consensus 562 ~i~~~~vL~~~gd~itTD~I~PAG~i~~~s~a~~~L~~~g~~~~~~n~yg~rr~n~evm~rg~F~n~r~~n~~~~~~~g~ 641 (795)
|++++.||+++..+|||||||-||+ ||+++|+-+.-.|.+---.-|.|.|- ..
T Consensus 575 d~edl~ilikv~gkCttDhIsaaGp---------wlkY~Ghl~nisnn~~igain~En~e------------------~n 627 (778)
T KOG0453|consen 575 DLEDLKILIKVKGKCTTDHISAAGP---------WLKYRGHLENISNNDLIGAINKENGE------------------AN 627 (778)
T ss_pred ccccceEEEEEecccCccccccCCc---------ceeccchhhhcccchhhhhcchhhhh------------------hh
Confidence 8999999999999999999999975 99998876554443310011222211 11
Q ss_pred cccccCCCccccccchHHHHHHcCCCcEEEeCCccCCCCchhhhhhchhhcCeeEEEecchhHHhhhhhccCcccccccc
Q 003797 642 KTVHVPTGEKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFK 721 (795)
Q Consensus 642 ~t~~~p~~~~~~v~~~A~~y~~~~~~~iiVaG~NfG~GSSRE~Aa~a~~~lGv~aVIA~SFarI~~~Nlin~Gilpl~~~ 721 (795)
.-.+..+||...+.+.++.||+.|++||+|+++|||.||||||||.+|++||+++||.+||+|||++||+|+|+|||+|.
T Consensus 628 ~~~n~~~ge~~~vp~~~~~yk~~g~~wvvv~~~NyGeGSsREhAAlepr~lGg~~ii~kSFarIhetNlkkqglLpLtfa 707 (778)
T KOG0453|consen 628 CVKNYLTGEFGTVPDTARDYKKHGIRWVVVGDENYGEGSSREHAALEPRHLGGRAIITKSFARIHETNLKKQGLLPLTFA 707 (778)
T ss_pred hhhhccccccCCcCchhhhHHhcCceeEEEcccccCCCcchhhhhhchhhcCCcEEEeehhHHHHHhhhhhcceeeeecc
Confidence 22334578888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccchhhccCCCCeEEEEecCCccccCCCCceEEE--EcCCCeEEEEEecCC-CHHHHHHHHhcChHHHHHH
Q 003797 722 AGEDADSLGLTGHERFSIDLPSKISEIRPGQDVTV--TTDSGKSFTCTVRFD-TEVELAYFDHGGILPFVIR 790 (795)
Q Consensus 722 ~~~~~~~l~~~~~~~~~idl~~~~~~~~~g~~v~v--~~~~g~~~~~~~~~~-t~~e~~~~~aGGll~~v~~ 790 (795)
++.+|++|. ..+.+++ . ++.++.||.++++ +..+|+++..++.+. +..|++|+++|..|+++++
T Consensus 708 npadydKi~--~~d~~~~--~-~L~~~~~gkp~t~~vt~~dg~~~~~kl~ht~n~~Qi~~fkaGsaln~~~e 774 (778)
T KOG0453|consen 708 NPADYDKIR--PADKVSI--K-GLTRRTPGKPLTVVVTKKDGKEVEIKLNHTGNKLQIEWFKAGSALNVMKE 774 (778)
T ss_pred CHHHhhhcC--hhcccch--h-hhhhhcCCCceeEEEECCCCcEEEEecccccchhhhHhhhcchHHHHHHH
Confidence 999999973 3333343 2 2446778876665 456888888887764 8899999999999998765
No 15
>cd01586 AcnA_IRP Aconitase A catalytic domain. Aconitase A catalytic domain. This is the major form of the TCA cycle enzyme aconitate hydratase, also known as aconitase and citrate hydrolyase. It includes bacterial and archaeal aconitase A, and the eukaryotic cytosolic form of aconitase. This group also includes sequences that have been shown to act as an iron-responsive element (IRE) binding protein in animals and may have the same role in other eukaryotes.
Probab=100.00 E-value=6.8e-124 Score=1019.18 Aligned_cols=382 Identities=76% Similarity=1.212 Sum_probs=370.4
Q ss_pred ChHHHHhcCCCCCccCCCCceEEEecccccCCCCCchhHHHHHHHHHHHHhhhhhhhhhhhccccCcceeeCCCCceecc
Q 003797 1 MRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTRSENAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGSGIVHQ 80 (795)
Q Consensus 1 ~r~~~~~~g~~~~~~~P~~pv~lviDH~v~~~~~~~~~a~~~n~~~e~~rn~e~~~fl~~~~~~f~~~~~~~pg~GI~Hq 80 (795)
|||+++++|+||+++||.+|++|++||+++++..+..+++.+|+.++++||+|||.|++|++++|.+++|+|||+|||||
T Consensus 19 ~R~~~~~~g~d~~~~~p~~p~~l~~DH~v~~~~~~~~~~~~~~~~~~~~~N~e~~~~~~~~~~~~~~~~~~~pg~GI~Hq 98 (404)
T cd01586 19 MRDAVKRLGGDPEKINPLIPVDLVIDHSVQVDFYGTADALAKNMKLEFERNRERYEFLKWGQKAFKNLRVVPPGTGIIHQ 98 (404)
T ss_pred HHHHHHHhCCChhhcCCCCCcceEcCCCCCCCCccccCHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCCCCCCCCCEeee
Confidence 89999999999999999999999999999999988889999999999999999999999999999999999999999999
Q ss_pred chhccccceec----cCCCcccCCeEEecCCCcCCcCccccccccccHHHHHHHHccCceeecCCceEEEEEecccCCCc
Q 003797 81 VNLEYLGRVVF----NTNGMLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGV 156 (795)
Q Consensus 81 v~~E~~a~~v~----~~~G~~~P~~vvGtDSHT~~~GalG~la~GvGg~e~~~~m~g~~~~~~vPevv~V~l~G~l~~gV 156 (795)
|++|+||++++ +++|+++|+++|||||||||+||||+||||||++|++.+|+||++||++||+|+|+|+|+|++||
T Consensus 99 v~~E~~a~~~~~~~~~~~g~~~P~~ivg~DSHT~t~GalGala~GvG~te~~~~ma~~~~~~~vP~~i~V~l~G~l~~gV 178 (404)
T cd01586 99 VNLEYLARVVFTSEEDGDGVAYPDSVVGTDSHTTMINGLGVLGWGVGGIEAEAVMLGQPISMLLPEVVGVKLTGKLRPGV 178 (404)
T ss_pred ehhhhcccceeecccCCCceEeeeeEeecCCCCccCCcccceEecccHHHHHHHHhCCccccCCCcEEEEEEEeecCCCc
Confidence 99999999998 45789999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHHhcCccceEEEEecCCCCCCChhhhhhhhccccccCCceeeecCCHHHHHHHhhcCCChhHHHHHHH
Q 003797 157 TATDLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVAMVEG 236 (795)
Q Consensus 157 takDviL~i~~~l~~~G~~g~~vEf~G~gv~~Ls~~~R~TI~NMa~E~GA~~~~fp~D~~t~~YL~~~gr~~~~~~~~~~ 236 (795)
|+|||||+|+++|+.+|++|++|||+|||+++||+++|||||||++|+|||++|||+|
T Consensus 179 taKDviL~li~~l~~~G~~g~~iEf~G~gi~~LS~~~R~Ti~NMa~E~GA~~gif~~D---------------------- 236 (404)
T cd01586 179 TATDLVLTVTQMLRKVGVVGKFVEFFGPGVAKLSVADRATIANMAPEYGATCGFFPVD---------------------- 236 (404)
T ss_pred CHHHHHHHHHHHhCcCCccceEEEEECcccccccHhHhhhhhccchhhCceeeEeccC----------------------
Confidence 9999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHhhhcccCCCCCCCCcccEEEEEECCCcccceecCCCCCCccccCccchhhhhhhcccccCCCCCCCccccccceee
Q 003797 237 YLRANKMFVDYNEPQQERVYSSYLELNLADVEPCISGPKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKF 316 (795)
Q Consensus 237 y~~~~~l~~~~~~~D~~a~Y~~vieiDLs~leP~vA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 316 (795)
+++++||||+|||+||+|++|+|++||.
T Consensus 237 --------------------d~~i~iDls~leP~Va~P~~Pd~v~~v~-------------------------------- 264 (404)
T cd01586 237 --------------------TQVVELDLSTVEPSVSGPKRPQDRVPLH-------------------------------- 264 (404)
T ss_pred --------------------ceEEEEEcccceeeecCCCCcccccCcC--------------------------------
Confidence 5679999999999999999999999982
Q ss_pred ecCCCcccccCccEEEEEeecCCCCCChHHHHHHHHHHHHHHhCCCccCCceeEEEecCCHHHHHHHHHcChHHHHHhcC
Q 003797 317 SFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQG 396 (795)
Q Consensus 317 ~~~g~~~~l~~g~V~~a~IGSCTN~~~~dl~~aA~lLa~~A~~~G~kv~~~V~~~v~PgS~~V~~~l~~~Gl~~~l~~aG 396 (795)
++|++||||||||||+||++.||++|+|||+.+|+||+||||++|+|||++|+++|+++|++++|.++|
T Consensus 265 -----------~~Id~v~IGSCTNgr~eDl~~aA~iL~~~a~~kG~kv~~~V~~~v~PgS~~V~~~~~~~Gl~~~l~~aG 333 (404)
T cd01586 265 -----------GSVVIAAITSCTNTSNPSVMLAAGLLAKKAVELGLKVKPYVKTSLAPGSRVVTKYLEASGLLPYLEKLG 333 (404)
T ss_pred -----------CcEeEEEEEcCCCCCCHHHHHHHHHHHHHHHhcCCccCCCccEEEeCCCHHHHHHHHHCChHHHHHHcC
Confidence 137799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEeccCCccccCCCCCCChhhhccccCCceeEEEEeccCCCCCCCCCCccCCccccCHHHHHHHHHhCcc
Q 003797 397 FHIVGYGCTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTV 467 (795)
Q Consensus 397 a~i~~~gCg~CiG~~g~l~~~~~~~i~~~~~~~~~vss~NRNF~GR~g~~~~~~yLaSP~~vaA~AlaG~I 467 (795)
|.|.+||||+|+|+++++.+.++..+.+||+++++|||+||||+||||+..+++|||||++|||+||+|+|
T Consensus 334 a~v~~pgCg~CiG~~g~~~~~~~~~~~~ge~~~~~vsT~NRNF~GR~G~~~~~vyLaSP~~vAAsAi~G~i 404 (404)
T cd01586 334 FHVVGYGCTTCIGNSGPLPEEVEEAIKENDLVVAAVLSGNRNFEGRIHPLVRANYLASPPLVVAYALAGTV 404 (404)
T ss_pred CEEcCCcchhccCCCCCCCchhhhhccCCCeEEEEEeccCCCCCCCCCCCcCceEECCHHHHHHHHhcccC
Confidence 99999999999999999988888888999998778999999999999999999999999999999999986
No 16
>TIGR00170 leuC 3-isopropylmalate dehydratase, large subunit. Several pairs of archaeal proteins resemble the leuC and leuD pair in length and sequence but even more closely resemble the respective domains of homoaconitase, and their identity is uncertain. These homologs are now described by a separate model of subfamily (rather than equivalog) homology type, and the priors and cutoffs for this model have been changed to focus this equivalog family more narrowly.
Probab=100.00 E-value=3.8e-115 Score=974.92 Aligned_cols=414 Identities=26% Similarity=0.396 Sum_probs=364.9
Q ss_pred HHHHhcCCCCCccCCCCceEEEecccccCCCC--CchhHHHHHHHHHHHHhhhhhhhhhhhccccCcceeeCCCCceecc
Q 003797 3 DAMNKLGSDSNKINPLVPVDLVIDHSVQVDVT--RSENAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGSGIVHQ 80 (795)
Q Consensus 3 ~~~~~~g~~~~~~~P~~pv~lviDH~v~~~~~--~~~~a~~~n~~~e~~rn~e~~~fl~~~~~~f~~~~~~~pg~GI~Hq 80 (795)
+.|+++|. ++++|.. +++++||++|++.. +..++...|+.+++++|.++|.+ + .+++.+||+|||||
T Consensus 42 ~~~~~~g~--~v~~p~~-~~~~~DH~vp~~~~~~~~~~~~~~~~~~~~r~~a~~~gi------~--~~~v~~p~~GI~Hq 110 (465)
T TIGR00170 42 EGLRQAGR--KVRRPQK-TFATMDHNIPTQNRDFNIKDEVAKIQVTELEKNCKEFGV------R--LFDLHSVDQGIVHV 110 (465)
T ss_pred HHHHHcCC--CcCCCcC-EEEEeCCCCCCCCccccccCHHHHHHHHHHHHHHHHhCC------e--eeccCCCCCCEeCe
Confidence 35667773 6778877 99999999999763 45667789999999999999875 2 24567899999999
Q ss_pred chhccccceeccCCCcccC-CeEEecCCCcCCcCccccccccccHHHHHHHHccCceeecCCceEEEEEecccCCCcchh
Q 003797 81 VNLEYLGRVVFNTNGMLYP-DSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGVTAT 159 (795)
Q Consensus 81 v~~E~~a~~v~~~~G~~~P-~~vvGtDSHT~~~GalG~la~GvGg~e~~~~m~g~~~~~~vPevv~V~l~G~l~~gVtak 159 (795)
|++| +|+++| +++|||||||||+||||+||||||++|++.+|+||++||++||+|+|+|+|+|++||++|
T Consensus 111 v~~E---------~g~~~PG~~ivgtDSHT~t~GalGala~GvG~te~~~~l~tg~~~~~vPe~v~V~l~G~l~~gV~aK 181 (465)
T TIGR00170 111 MGPE---------QGLTLPGMTIVCGDSHTSTHGAFGALAFGIGTSEVEHVLATQTLKQARAKTMKIEVDGKLAPGITAK 181 (465)
T ss_pred Eccc---------cCcccCCceEEecCCCccccccccceEEccCHHHHHHHHhCCcEeccCCCEEEEEEEeecCCCcCHH
Confidence 9999 899999 689999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhcCccceEEEEecCCCCCCChhhhhhhhccccccCCceeeecCCHHHHHHHhhcCCChhHHHHHHHHHH
Q 003797 160 DLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVAMVEGYLR 239 (795)
Q Consensus 160 DviL~i~~~l~~~G~~g~~vEf~G~gv~~Ls~~~R~TI~NMa~E~GA~~~~fp~D~~t~~YL~~~gr~~~~~~~~~~y~~ 239 (795)
||||+|+++|+.+|++||+|||+|+||++||+++|||||||++|+||++||||+|++|++||+.+++... .++|.+
T Consensus 182 DviL~ii~~lg~~G~~g~~vEF~G~gv~~Ls~~~R~Ti~NMa~E~GA~~gi~~~D~~t~~yl~~r~~~~~----~~~~~~ 257 (465)
T TIGR00170 182 DIILAIIGKTGVAGGTGHVIEFCGEAIRDLSMEGRMTVCNMAIEAGARAGLIAPDETTFEYCKGRPHAPK----GKEFDK 257 (465)
T ss_pred HHHHHHHHHhCccCcceEEEEEEccccccccHHHhhhhhhcchhhCceeeEecCChhHHHHHhcCCcccc----hhHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998776543 367888
Q ss_pred HhhhcccCCCCCCCCcccEEEEEECCCcccceecCCCCCCccccCccchhhhhhhcccccCCCCCCCccccccceeeecC
Q 003797 240 ANKMFVDYNEPQQERVYSSYLELNLADVEPCISGPKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFH 319 (795)
Q Consensus 240 ~~~l~~~~~~~D~~a~Y~~vieiDLs~leP~vA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 319 (795)
++.+|+.. .+|++|.|+++++||||+|+|+||+|++|+|++||+|+.++...+.+.. ++.....+++|+
T Consensus 258 ~~~~~~~l-~~d~~a~Y~~~i~iDls~leP~Va~P~~P~n~~~v~e~~~~~~~~~~~~----------~~~~~~~~~~~~ 326 (465)
T TIGR00170 258 AVAYWKTL-KTDEGAVFDTVITLEANDISPQVTWGTNPGQVLPVNSEVPDPESFADPV----------DKASAERALAYM 326 (465)
T ss_pred HHHhhhhc-cCCCCCceeEEEEEEcccceeeecCCCChhhccCccccCCChhhhcchh----------hhhhhhhhhhhc
Confidence 98998753 6899999999999999999999999999999999999876544432210 111111223333
Q ss_pred CCcc--cccCccEEEEEeecCCCCCChHHHHHHHHHHHHHHhCCCccCCceeEEEecCCHHHHHHHHHcChHHHHHhcCc
Q 003797 320 GQPA--ELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGF 397 (795)
Q Consensus 320 g~~~--~l~~g~V~~a~IGSCTN~~~~dl~~aA~lLa~~A~~~G~kv~~~V~~~v~PgS~~V~~~l~~~Gl~~~l~~aGa 397 (795)
|... .+.+.+|++||||||||||++||++||++| ||+||+||||++|+|||++|++||+++||+++|+++||
T Consensus 327 ~~~~~~~~~~~~Id~~~IGSCTNgr~~dl~aaA~vl------kG~kv~~~V~~~v~PgS~~V~~~~~~~Gl~~~l~~aG~ 400 (465)
T TIGR00170 327 GLEPGTPLKDIKVDKVFIGSCTNSRIEDLRAAAAVI------KGRKVADNVKALVVPGSGLVKLQAEKEGLDKIFIEAGF 400 (465)
T ss_pred cccCCcccCCCeEEEEEEecCCCCCHHHHHHHHHHh------cCCCcCCCccEEEECCCHHHHHHHHHCCcHHHHHHcCC
Confidence 3221 367789999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred EEeccCCccccCCCCCCChhhhccccCCceeEEEEeccCCCCCCCCCCccCCccccCHHHHHHHHHhCccc
Q 003797 398 HIVGYGCTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVD 468 (795)
Q Consensus 398 ~i~~~gCg~CiG~~g~l~~~~~~~i~~~~~~~~~vss~NRNF~GR~g~~~~~~yLaSP~~vaA~AlaG~I~ 468 (795)
.|.+||||+|+|+++++.++ +++ ++||+||||+||||+. ..+|||||++||||||+|+|+
T Consensus 401 ~i~~~gCg~C~G~~~~~~~~-------ge~---~isTsNRNF~GR~G~~-~~~yLaSP~~vAAsAi~G~it 460 (465)
T TIGR00170 401 EWREPGCSMCLGMNNDRLPE-------GER---CASTSNRNFEGRQGRG-GRTHLVSPAMAAAAAIHGHFV 460 (465)
T ss_pred EEcCCccccccCcCCCCCCC-------CCE---EEEecCCCCCCCCCCC-CCEEEcCHHHHHHHHhCceec
Confidence 99999999999999887654 443 5799999999999985 478999999999999999996
No 17
>cd01584 AcnA_Mitochondrial Aconitase catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Mitochondrial aconitase A catalytic domain. Aconitase (also known as aconitate hydratase and citrate hydro-lyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediary product during the course of the reaction. In eukaryotes two isozymes of aconitase are known to exist: one found in the mitochondrial matrix and the other found in the cytoplasm. This is the mitochondrial form. The mitochondrial product is coded by a nuclear gene. Most members of this subfamily are mitochondrial but there are some bacterial members.
Probab=100.00 E-value=2.2e-114 Score=954.18 Aligned_cols=395 Identities=32% Similarity=0.518 Sum_probs=350.7
Q ss_pred HHHhcCCCCCccCCCCceEEEecccccCCCCCchhHHHHHHHHHHHHhhhhhhhhhhhccccCcceeeCCCCceeccchh
Q 003797 4 AMNKLGSDSNKINPLVPVDLVIDHSVQVDVTRSENAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGSGIVHQVNL 83 (795)
Q Consensus 4 ~~~~~g~~~~~~~P~~pv~lviDH~v~~~~~~~~~a~~~n~~~e~~rn~e~~~fl~~~~~~f~~~~~~~pg~GI~Hqv~~ 83 (795)
.|+++|. ++.++|. ++++||++|++..+.++ ...++.+|.++|+|++|.+++| +|+|++||+||||||++
T Consensus 15 ~f~~~g~-~~v~~p~---~~~~DH~~~~~~~~~~~-----~~~a~~~n~~~~~~~r~~a~~~-gi~~~~~g~GI~Hqv~~ 84 (412)
T cd01584 15 QFMSSGL-PKVAVPS---TIHCDHLIEAQVGGEKD-----LKRAKDINKEVYDFLASAGAKY-GIGFWKPGSGIIHQIVL 84 (412)
T ss_pred HHHHhCC-CCCCCCC---eEEeCCCccccccCCCc-----hhhhhhhhHHHHHHHHHHHHHc-CCeEECCCCCeeceEch
Confidence 4667776 4666666 68999999998776544 4667789999999999999998 89999999999999999
Q ss_pred ccccceeccCCCcccCC-eEEecCCCcCCcCccccccccccHHHHHHHHccCceeecCCceEEEEEecccCCCcchhhHH
Q 003797 84 EYLGRVVFNTNGMLYPD-SVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGVTATDLV 162 (795)
Q Consensus 84 E~~a~~v~~~~G~~~P~-~vvGtDSHT~~~GalG~la~GvGg~e~~~~m~g~~~~~~vPevv~V~l~G~l~~gVtakDvi 162 (795)
|+ +++|+ ++|||||||||+||||+||||||++|++++|+|++|||++||+|+|+|+|+|++||++||||
T Consensus 85 E~----------~~~PG~~ivG~DSHT~t~GalGa~a~GvG~td~~~~m~g~~~~~~vPe~i~v~l~G~l~~gV~aKDli 154 (412)
T cd01584 85 EN----------YAFPGLLMIGTDSHTPNAGGLGGIAIGVGGADAVDVMAGIPWELKCPKVIGVKLTGKLSGWTSPKDVI 154 (412)
T ss_pred hh----------ccCCCCeEEeccCCCCCcChhhheeeccCHHHHHHHHhCCeeccCCCCEEEEEEEcccCCCcCHHHHH
Confidence 93 56785 79999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCccceEEEEecCCCCCCChhhhhhhhccccccCCceeeecCCHHHHHHHhhcCCChhHHHHHHHHHHHhh
Q 003797 163 LTVTQMLRKHGVVGKFVEFHGDGMGELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVAMVEGYLRANK 242 (795)
Q Consensus 163 L~i~~~l~~~G~~g~~vEf~G~gv~~Ls~~~R~TI~NMa~E~GA~~~~fp~D~~t~~YL~~~gr~~~~~~~~~~y~~~~~ 242 (795)
|+|+++|+.+|++||+|||+|+|+++||+++|||||||++|+|||+||||+|++|++||+.++|.++ .+++++|+ ++.
T Consensus 155 L~ii~~l~~~G~~~~~vEf~G~gi~~Ls~~~R~Ti~NMa~E~GA~~gi~~~D~~t~~yl~~~~~~~~-~~~~~~y~-~~~ 232 (412)
T cd01584 155 LKVAGILTVKGGTGAIVEYFGPGVDSLSCTGMGTICNMGAEIGATTSVFPYNERMKKYLKATGRAEI-ADLADEFK-DDL 232 (412)
T ss_pred HHHHHHhCcCCcceEEEEEECcccccCChhhhcchhhcchhhCceEEEecCChhHHHHHHhcCchHH-HHHHHHHH-hcc
Confidence 9999999999999999999999999999999999999999999999999999999999999998865 67777777 333
Q ss_pred hcccCCCCCCCCcccEEEEEECCCcccceecCCCCCCccccCccchhhhhhhcccccCCCCCCCccccccceeeecCCCc
Q 003797 243 MFVDYNEPQQERVYSSYLELNLADVEPCISGPKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHGQP 322 (795)
Q Consensus 243 l~~~~~~~D~~a~Y~~vieiDLs~leP~vA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~ 322 (795)
+| +|++|.|+++++||||+|||+||+|++|+|++||+|+.+.+.+ .|++
T Consensus 233 l~-----~D~da~Y~~~i~iDls~leP~va~P~~P~nv~~v~e~~~~~~~--------------------------~g~~ 281 (412)
T cd01584 233 LV-----ADEGAEYDQLIEINLSELEPHINGPFTPDLATPVSKFKEVAEK--------------------------NGWP 281 (412)
T ss_pred cC-----CCCCCCeEEEEEEEcccceEeecCCCChhcCcChhHcChhhhc--------------------------cCCc
Confidence 43 7999999999999999999999999999999999999864321 1111
Q ss_pred ccccCccEEEEEeecCCCCCChHHHHHHHHHHHHHHhCCCccCCceeEEEecCCHHHHHHHHHcChHHHHHhcCcEEecc
Q 003797 323 AELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGY 402 (795)
Q Consensus 323 ~~l~~g~V~~a~IGSCTN~~~~dl~~aA~lLa~~A~~~G~kv~~~V~~~v~PgS~~V~~~l~~~Gl~~~l~~aGa~i~~~ 402 (795)
-+|++||||||||||+|||+.|| .++|+|+++|+|++ ||++|+|||++|+++|+++||+++|.++||.|.+|
T Consensus 282 -----~~Id~a~IGSCTNgr~~Dl~~AA-~ilk~a~~~g~~v~--vr~~v~PgS~~V~~~~~~~Gl~~~l~~aG~~i~~p 353 (412)
T cd01584 282 -----LDLRVGLIGSCTNSSYEDMGRAA-SIAKQALAHGLKCK--SIFTITPGSEQIRATIERDGLLQTFRDAGGIVLAN 353 (412)
T ss_pred -----eeEEEEEEeccCCCChHHHHHHH-HHHhhHHhCCCCCC--CcEEEeCCCHHHHHHHHHCCcHHHHHHcCCEEcCC
Confidence 24789999999999999977666 55689999999998 89999999999999999999999999999999999
Q ss_pred CCccccCCCCC-CChhhhccccCCceeEEEEeccCCCCCCCC-CCccCCccccCHHHHHHHHHhCcc
Q 003797 403 GCTTCIGNSGD-LDESVASTITDNDIVAAAVLSGNRNFEGRV-HPLTRANYLASPPLVVAYALAGTV 467 (795)
Q Consensus 403 gCg~CiG~~g~-l~~~~~~~i~~~~~~~~~vss~NRNF~GR~-g~~~~~~yLaSP~~vaA~AlaG~I 467 (795)
|||+|+|++++ ..+ +++.. ++|||+||||+||| |+....+|||||++||||||+|++
T Consensus 354 gCg~C~G~~~~~~~~-------~g~~~-~~vsT~NRNF~GR~gg~~~~~~YLaSP~~vaAsAi~G~~ 412 (412)
T cd01584 354 ACGPCIGQWDRKDIK-------KGEKN-TIVTSYNRNFTGRNDANPATHAFVASPEIVTAMAIAGTL 412 (412)
T ss_pred cccccccCCCCcccC-------CCCce-EEEEecCCCCCCCCCCCCCceEEeCCHHHHHHHHhcccC
Confidence 99999999875 221 23321 36899999999998 555667999999999999999985
No 18
>PRK12466 isopropylmalate isomerase large subunit; Provisional
Probab=100.00 E-value=2.4e-114 Score=969.76 Aligned_cols=413 Identities=28% Similarity=0.403 Sum_probs=366.6
Q ss_pred HHHhcCCCCCccCCCCceEEEecccccCCCCC---chhHHHHHHHHHHHHhhhhhhhhhhhccccCcceeeCCCCceecc
Q 003797 4 AMNKLGSDSNKINPLVPVDLVIDHSVQVDVTR---SENAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGSGIVHQ 80 (795)
Q Consensus 4 ~~~~~g~~~~~~~P~~pv~lviDH~v~~~~~~---~~~a~~~n~~~e~~rn~e~~~fl~~~~~~f~~~~~~~pg~GI~Hq 80 (795)
.|+++|. +++||.+ +.+++||++|+++.+ ..+....|+.+++++|.++|.+. .+++.+||+|||||
T Consensus 44 ~~~~~g~--~v~~P~~-~~~~~DH~vp~~~~~~~~~~~~~~~~~~~~~r~~a~~~gi~--------~~~~~~p~~GI~Hq 112 (471)
T PRK12466 44 GLRARGR--TVRRPDL-TLAVVDHVVPTRPGRDRGITDPGGALQVDYLRENCADFGIR--------LFDVDDPRQGIVHV 112 (471)
T ss_pred HHHHcCC--cccCCCC-eEEEeCCCCCCCccccccccCHHHHHHHHHHHHHHHHcCCe--------eeccCCCCCCEEeE
Confidence 4667763 6899999 579999999998732 33466788899999999988642 24557899999999
Q ss_pred chhccccceeccCCCcccCC-eEEecCCCcCCcCccccccccccHHHHHHHHccCceeecCCceEEEEEecccCCCcchh
Q 003797 81 VNLEYLGRVVFNTNGMLYPD-SVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGVTAT 159 (795)
Q Consensus 81 v~~E~~a~~v~~~~G~~~P~-~vvGtDSHT~~~GalG~la~GvGg~e~~~~m~g~~~~~~vPevv~V~l~G~l~~gVtak 159 (795)
+++| +|+++|+ ++|||||||||+||||+||||||++|++.+|+||++||++||+|+|+|+|+|++||++|
T Consensus 113 v~~E---------~G~~~PG~~ivg~DSHT~t~GalGala~GvG~td~~~~l~tg~~~~~vPetv~V~l~G~l~~gV~aK 183 (471)
T PRK12466 113 VAPE---------LGLTLPGMVIVCGDSHTTTYGALGALAFGIGTSEVEHVLATQTLVYRKPKTMRVRVDGELPPGVTAK 183 (471)
T ss_pred Eccc---------cCcccCCceEEccCCCcCCcChhhheEEccCHHHHHHHHhCCeEEeeCCcEEEEEEEcccCCCcCHH
Confidence 9999 8999996 79999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhcCccceEEEEecCCCCCCChhhhhhhhccccccCCceeeecCCHHHHHHHhhcCCChhHHHHHHHHHH
Q 003797 160 DLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVAMVEGYLR 239 (795)
Q Consensus 160 DviL~i~~~l~~~G~~g~~vEf~G~gv~~Ls~~~R~TI~NMa~E~GA~~~~fp~D~~t~~YL~~~gr~~~~~~~~~~y~~ 239 (795)
||||+|+++|+.+|++||+|||+||||++||+++|||||||++|+||++||||+|++|++||+.++|.++. ++|.+
T Consensus 184 DviL~ii~~lg~~G~~g~~iEf~G~~i~~Ls~~~R~Ti~NMa~E~GA~~gi~~~D~~t~~yl~~~~~~~~~----~~~~~ 259 (471)
T PRK12466 184 DLILALIARIGADGATGYAIEFAGEAIRALSMEGRMTLCNMAVEAGARGGLIAPDETTFDYLRGRPRAPKG----ALWDA 259 (471)
T ss_pred HHHHHHHHHhCcCCccceEEEEECCccccCCHHHHhhhhhcccccCceEEEecCChHHHHHHHhCCCchhH----HHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999988653 47888
Q ss_pred HhhhcccCCCCCCCCcccEEEEEECCCcccceecCCCCCCccccCccchhhhhhhcccccCCCCCCCccccccceeeecC
Q 003797 240 ANKMFVDYNEPQQERVYSSYLELNLADVEPCISGPKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFH 319 (795)
Q Consensus 240 ~~~l~~~~~~~D~~a~Y~~vieiDLs~leP~vA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 319 (795)
++..|+.. .+|++|.|+++++||||+|||+||+|++|+|++||+|+.+++.++++... +......++|+
T Consensus 260 ~~~~~~~~-~~D~~a~Y~~~i~iDls~leP~va~P~~P~n~~~v~e~~~~~~~~~~~~~----------~~~~~~~~~y~ 328 (471)
T PRK12466 260 ALAYWRTL-RSDADAVFDREVEIDAADIAPQVTWGTSPDQAVPITGRVPDPAAEADPAR----------RAAMERALDYM 328 (471)
T ss_pred HHhhhhcc-cCCCCCceEEEEEEEcccceEeecCCCChhhceEccccCcChhhhcchhh----------hhhhhhhhhhc
Confidence 88888643 68999999999999999999999999999999999999988877664321 11111234454
Q ss_pred CCcc--cccCccEEEEEeecCCCCCChHHHHHHHHHHHHHHhCCCccCCceeEEEecCCHHHHHHHHHcChHHHHHhcCc
Q 003797 320 GQPA--ELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGF 397 (795)
Q Consensus 320 g~~~--~l~~g~V~~a~IGSCTN~~~~dl~~aA~lLa~~A~~~G~kv~~~V~~~v~PgS~~V~~~l~~~Gl~~~l~~aGa 397 (795)
+... .+.+.+|++||||||||||+|||++||++| ||+||+||||++|+|||++|+.+|+++||+++|+++||
T Consensus 329 ~l~~g~~~~~~~Id~~~IGSCTNgr~eDl~~aA~il------kG~kv~~~V~~~v~PgS~~V~~~~~~~Gl~~~~~~aG~ 402 (471)
T PRK12466 329 GLTPGTPLAGIPIDRVFIGSCTNGRIEDLRAAAAVL------RGRKVAPGVRAMVVPGSGAVRRQAEAEGLARIFIAAGF 402 (471)
T ss_pred ccCCCcccCCceEEEEEEeccCCCChHHHHHHHHHH------cCCCCCCCccEEEECCCHHHHHHHHHCCcHHHHHHcCC
Confidence 4322 266789999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred EEeccCCccccCCCCCCChhhhccccCCceeEEEEeccCCCCCCCCCCccCCccccCHHHHHHHHHhCccc
Q 003797 398 HIVGYGCTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVD 468 (795)
Q Consensus 398 ~i~~~gCg~CiG~~g~l~~~~~~~i~~~~~~~~~vss~NRNF~GR~g~~~~~~yLaSP~~vaA~AlaG~I~ 468 (795)
.|.+||||+|+|+++++.++ ||+ +|||+||||+||||+ ...+|||||++||||||+|+|+
T Consensus 403 ~i~~~gCg~C~G~~~~~~~~-------ge~---~vsT~NRNF~GR~G~-~~~~yLaSP~~vAAsAi~G~I~ 462 (471)
T PRK12466 403 EWREPGCSMCLAMNDDVLAP-------GER---CASTTNRNFEGRQGP-GARTHLMSPAMVAAAAVAGHIT 462 (471)
T ss_pred EEcCCccccccCcCCCCCCC-------CCE---EEEecCCCCCCCCCC-CCcEEECCHHHHHHHHhCcEeC
Confidence 99999999999999776544 454 689999999999998 4567999999999999999995
No 19
>PRK05478 isopropylmalate isomerase large subunit; Validated
Probab=100.00 E-value=5.7e-114 Score=966.78 Aligned_cols=414 Identities=27% Similarity=0.398 Sum_probs=367.8
Q ss_pred HHHHhcCCCCCccCCCCceEEEecccccCCCC--CchhHHHHHHHHHHHHhhhhhhhhhhhccccCcceeeCCCCceecc
Q 003797 3 DAMNKLGSDSNKINPLVPVDLVIDHSVQVDVT--RSENAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGSGIVHQ 80 (795)
Q Consensus 3 ~~~~~~g~~~~~~~P~~pv~lviDH~v~~~~~--~~~~a~~~n~~~e~~rn~e~~~fl~~~~~~f~~~~~~~pg~GI~Hq 80 (795)
+.|+++|. ++++|.+ +.+++||++|++.. ...++...|+.+++++|.+||.|. | +++.+|++|||||
T Consensus 42 ~~~~~~g~--~v~~p~~-~~~~~DH~v~~~~~~~~~~~~~~~~~~~~~r~~a~~~gi~------~--~~~~~~~~GI~Hq 110 (466)
T PRK05478 42 EGLRLAGR--KVRRPDL-TFATMDHNVPTTDRDLPIADPVSRIQVETLEKNCKEFGIT------L--FDLGDPRQGIVHV 110 (466)
T ss_pred HHHHHcCC--CccCCCC-eEEEcCCCCCCCcccccccCHHHHHHHHHHHHHHHHcCCe------e--eccCCCCCCEeCe
Confidence 35667774 6889999 88999999999876 456677889999999999998772 2 4456788999999
Q ss_pred chhccccceeccCCCcccC-CeEEecCCCcCCcCccccccccccHHHHHHHHccCceeecCCceEEEEEecccCCCcchh
Q 003797 81 VNLEYLGRVVFNTNGMLYP-DSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGVTAT 159 (795)
Q Consensus 81 v~~E~~a~~v~~~~G~~~P-~~vvGtDSHT~~~GalG~la~GvGg~e~~~~m~g~~~~~~vPevv~V~l~G~l~~gVtak 159 (795)
+++| +|+++| +++|||||||||+||||+||||||++|++.+|+||++||++||+|+|+|+|+|++||++|
T Consensus 111 v~~E---------~g~~~PG~~ivGtDSHT~t~GalGa~a~GvG~td~a~~m~tg~~~~~vPe~i~V~l~G~l~~gV~aK 181 (466)
T PRK05478 111 VGPE---------QGLTLPGMTIVCGDSHTSTHGAFGALAFGIGTSEVEHVLATQTLLQKKPKTMKIEVDGKLPPGVTAK 181 (466)
T ss_pred Eccc---------cccccCCceEEecCCCccccchhhheEeCCCHHHHHHHHhCCcEeccCCCEEEEEEEeecCCCcCHH
Confidence 9999 899999 689999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhcCccceEEEEecCCCCCCChhhhhhhhccccccCCceeeecCCHHHHHHHhhcCCChhHHHHHHHHHH
Q 003797 160 DLVLTVTQMLRKHGVVGKFVEFHGDGMGELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVAMVEGYLR 239 (795)
Q Consensus 160 DviL~i~~~l~~~G~~g~~vEf~G~gv~~Ls~~~R~TI~NMa~E~GA~~~~fp~D~~t~~YL~~~gr~~~~~~~~~~y~~ 239 (795)
||||+|+++|+.+|++|++|||+||||++||+++|+|||||++|+||++||||+|++|++||+.+++.. .+++|.+
T Consensus 182 DviL~ii~~l~~~g~~g~~vEf~G~gv~~Ls~~~R~Ti~NMa~E~GA~~~i~~~De~t~~yl~~r~~~~----~~~~~~~ 257 (466)
T PRK05478 182 DIILAIIGKIGTAGGTGYVIEFAGEAIRALSMEGRMTICNMSIEAGARAGLVAPDETTFEYLKGRPFAP----KGEDWDK 257 (466)
T ss_pred HHHHHHHHHhCcCCcceEEEEEECccccccCHHHHhhhhhcccccCceeeeecCCHhHHHHHhcCCccc----cHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999654432 4678999
Q ss_pred HhhhcccCCCCCCCCcccEEEEEECCCcccceecCCCCCCccccCccchhhhhhhcccccCCCCCCCccccccceeeecC
Q 003797 240 ANKMFVDYNEPQQERVYSSYLELNLADVEPCISGPKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFH 319 (795)
Q Consensus 240 ~~~l~~~~~~~D~~a~Y~~vieiDLs~leP~vA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 319 (795)
++.+|+.. .+|++|.|+++++||||+|||+||+|++|+|++||+|+.+++.++++... +.......+|+
T Consensus 258 a~~~~~~l-~~D~~a~Y~~~i~iDls~leP~va~P~~P~n~~~v~e~~~~~~~~~~~~~----------~~~~~~~~~y~ 326 (466)
T PRK05478 258 AVAYWKTL-KSDEDAVFDKVVTLDAADIEPQVTWGTNPGQVISIDGKVPDPEDFADPVK----------RASAERALAYM 326 (466)
T ss_pred HHHhhhcc-cCCCCCceeEEEEEEcccceeeecCCCChhhceEccccCcChhhhcchhh----------hhhhhhhhhhc
Confidence 99998754 68999999999999999999999999999999999999988887776431 11111223343
Q ss_pred CCc--ccccCccEEEEEeecCCCCCChHHHHHHHHHHHHHHhCCCccCCceeEEEecCCHHHHHHHHHcChHHHHHhcCc
Q 003797 320 GQP--AELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGF 397 (795)
Q Consensus 320 g~~--~~l~~g~V~~a~IGSCTN~~~~dl~~aA~lLa~~A~~~G~kv~~~V~~~v~PgS~~V~~~l~~~Gl~~~l~~aGa 397 (795)
+.. ..+.+.+|++||||||||||++||++||++| +|+||+||||++|+|||++|+++|+++|++++|+++||
T Consensus 327 ~~~~g~~~~~~~id~~~IGSCTNg~~~dl~~aA~il------kG~kv~~~V~~~v~PgS~~V~~~~~~~Gl~~~l~~aG~ 400 (466)
T PRK05478 327 GLKPGTPITDIKIDKVFIGSCTNSRIEDLRAAAAVV------KGRKVAPGVRALVVPGSGLVKAQAEAEGLDKIFIEAGF 400 (466)
T ss_pred ccccCCccCCCeEEEEEEecCCCCCcHHHHHHHHHh------cCCCCCCCceEEEECCCHHHHHHHHHCCcHHHHHHcCC
Confidence 321 1267889999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred EEeccCCccccCCCCCCChhhhccccCCceeEEEEeccCCCCCCCCCCccCCccccCHHHHHHHHHhCccc
Q 003797 398 HIVGYGCTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVD 468 (795)
Q Consensus 398 ~i~~~gCg~CiG~~g~l~~~~~~~i~~~~~~~~~vss~NRNF~GR~g~~~~~~yLaSP~~vaA~AlaG~I~ 468 (795)
.|.+||||+|+|++++.. .+|++ +|||+||||+||||+.. .+|||||++||||||+|+|+
T Consensus 401 ~i~~~gCg~C~G~~~~~l-------~~ge~---~vst~NRNF~GR~G~~~-~~yLaSP~~vaAsAi~G~It 460 (466)
T PRK05478 401 EWREPGCSMCLAMNPDKL-------PPGER---CASTSNRNFEGRQGKGG-RTHLVSPAMAAAAAITGHFV 460 (466)
T ss_pred EEcCCccccccCcCCCCC-------CCCCE---EEEecCCCCCCCCCCCC-CEEEcCHHHHHHHHhCCCcC
Confidence 999999999999985543 34665 68999999999999655 58999999999999999995
No 20
>PF00330 Aconitase: Aconitase family (aconitate hydratase); InterPro: IPR001030 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. 3-isopropylmalate dehydratase (or isopropylmalate isomerase; 4.2.1.33 from EC) catalyses the stereo-specific isomerisation of 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate. This enzyme performs the second step in the biosynthesis of leucine, and is present in most prokaryotes and many fungal species. The prokaryotic enzyme is a heterodimer composed of a large (LeuC) and small (LeuD) subunit, while the fungal form is a monomeric enzyme. Both forms of isopropylmalate are related and are part of the larger aconitase family []. Aconitases are mostly monomeric proteins which share four domains in common and contain a single, labile [4Fe-4S] cluster. Three structural domains (1, 2 and 3) are tightly packed around the iron-sulphur cluster, while a fourth domain (4) forms a deep active-site cleft. The prokaryotic enzyme is encoded by two adjacent genes, leuC and leuD, corresponding to aconitase domains 1-3 and 4 respectively [, ]. LeuC does not bind an iron-sulphur cluster. It is thought that some prokaryotic isopropylamalate dehydrogenases can also function as homoaconitase 4.2.1.36 from EC, converting cis-homoaconitate to homoisocitric acid in lysine biosynthesis []. Homoaconitase has been identified in higher fungi (mitochondria) and several archaea and one thermophilic species of bacteria, Thermus thermophilus []. This entry represents a region containing 3 domains, each with a 3-layer alpha/beta/alpha topology. This regions represents the [4Fe-4S] cluster-binding region found at the N-terminal of eukaryotic mAcn, cAcn/IPR1 and IRP2, and bacterial AcnA, but in the C-terminal of bacterial AcnB. This domain is also found in the large subunit of isopropylmalate dehydratase (LeuC). More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0008152 metabolic process; PDB: 1L5J_B 1B0M_A 1B0J_A 1B0K_A 7ACN_A 6ACN_A 5ACN_A 3SNP_B 3SN2_A 2B3Y_A ....
Probab=100.00 E-value=6.6e-114 Score=969.10 Aligned_cols=418 Identities=41% Similarity=0.646 Sum_probs=340.2
Q ss_pred HHHhcCCCCCccCCCCceEEEecccccCCCCCchhHHHHHHHHHHHHhhhhhhhhhhhccccCcceeeCCC-Cceeccch
Q 003797 4 AMNKLGSDSNKINPLVPVDLVIDHSVQVDVTRSENAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPG-SGIVHQVN 82 (795)
Q Consensus 4 ~~~~~g~~~~~~~P~~pv~lviDH~v~~~~~~~~~a~~~n~~~e~~rn~e~~~fl~~~~~~f~~~~~~~pg-~GI~Hqv~ 82 (795)
.++++|. ++++|.. +++++||++|++..+. .|+..++.+|+++|+|++|.+++|+ +.+++|+ .||||||+
T Consensus 43 ~l~~~g~--~v~~p~~-v~~~~DH~vp~~~~~~-----~~~~~~~~~n~~~~~~l~~~~~~~g-i~~~~~~~~GI~Hqv~ 113 (465)
T PF00330_consen 43 DLRAMGE--KVRDPDK-VVLVIDHSVPADDIGS-----ANLQIEDARNRERYRFLRWFAKEFG-IKFFDPGGPGICHQVL 113 (465)
T ss_dssp HHHHHCH--CCHSTTS-EEEE--SS--BSS-HH-----HHHHHHHHHCHHHHHHHHHHHHHCT-TEEEETTSSBSHHHHH
T ss_pred hHHHCCC--ceecCCC-ceEEecCccccccccc-----hhcchhhHHHHHHHHHHHHHHHHcC-CceecCCCCCeeeeee
Confidence 4677775 4679998 9999999999987642 3788899999999999999999986 5555555 59999999
Q ss_pred hccccceeccCCCcccCC-eEEecCCCcCCcCccccccccccHHHHHHHHccCceeecCCceEEEEEecccCCCcchhhH
Q 003797 83 LEYLGRVVFNTNGMLYPD-SVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGVTATDL 161 (795)
Q Consensus 83 ~E~~a~~v~~~~G~~~P~-~vvGtDSHT~~~GalG~la~GvGg~e~~~~m~g~~~~~~vPevv~V~l~G~l~~gVtakDv 161 (795)
+| .|++.|+ ++||+||||||+||||+||||||++|++++|+||++||++||+|+|+|+|+|++||+||||
T Consensus 114 ~E---------~g~~~PG~~vvg~DSHT~t~GalGa~a~GvG~td~a~~l~tg~~~~~vPetv~V~l~G~l~~gV~aKDv 184 (465)
T PF00330_consen 114 PE---------EGLVLPGMTVVGTDSHTCTYGALGAFATGVGSTDVAAALATGPLWFRVPETVRVELTGKLPPGVTAKDV 184 (465)
T ss_dssp HH---------HTT-STTEEEEESSTTGGGGGGGTSEEEE--HHHHHHHHCTSBEEEE--EEEEEEEES---TT--HHHH
T ss_pred hh---------hccccceeEEEeCCCCcchhhhceeEEeccCHHHHHHHHHhhhhccccCceEEEEEEecCCCCccHHHH
Confidence 99 8889995 7999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCccceEEEEecCCCCCCChhhhhhhhccccccCCceeeecCCHHHHHHHhhcCCChhHHHHHHHHHHHh
Q 003797 162 VLTVTQMLRKHGVVGKFVEFHGDGMGELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVAMVEGYLRAN 241 (795)
Q Consensus 162 iL~i~~~l~~~G~~g~~vEf~G~gv~~Ls~~~R~TI~NMa~E~GA~~~~fp~D~~t~~YL~~~gr~~~~~~~~~~y~~~~ 241 (795)
||+|+++|+.+|++||+|||+||||++||+++|||||||++|+||++||||+|++|++||+.++|.+...++.++|.+.+
T Consensus 185 iL~ii~~lg~~G~~~~~vEf~G~~v~~Ls~~~R~Ti~NMa~E~GA~~g~~~~De~t~~Yl~~~~~~~~~~~~~~~~~~~~ 264 (465)
T PF00330_consen 185 ILHIIGRLGADGATGKAVEFFGPGVESLSMDDRMTICNMAIEMGAKTGIFPPDEKTLEYLRGRGRSPEGEELDEAYAKWQ 264 (465)
T ss_dssp HHHHHHHHHCCTTTTEEEEEESGGGGGS-HHHHHHHHHCGGHHTBSEEEE-B-HHHHHHHHHTTHHHHHHHHHHHHHHHG
T ss_pred HHHHHHhhhhhccCCeEEEEEChhhhhcCHhhhhhhhccccccCceEEEecCcHHHHHHHHhhhhhhHHHHHHHhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999887777777777777
Q ss_pred hhcccCCCCCCCCcccEEEEEECCCcccceecCCCCCCccccCccchhhhhhhcccccCCCCCCCccccccceeeecCC-
Q 003797 242 KMFVDYNEPQQERVYSSYLELNLADVEPCISGPKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHG- 320 (795)
Q Consensus 242 ~l~~~~~~~D~~a~Y~~vieiDLs~leP~vA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g- 320 (795)
.|+ +|++|.|+++++||||+|+|+||+|++|+|++||+|+.+++.++++.. .. ......++|++
T Consensus 265 ~l~-----~D~dA~Y~~~i~iDls~leP~va~P~~P~~~~~v~e~~~~~~~~~~~v-~~---------~~~~kal~y~~~ 329 (465)
T PF00330_consen 265 GLK-----SDPDAEYDKVIEIDLSELEPQVAGPHSPDNVVPVSEVAPDFASILDPV-ER---------EAAEKALDYMGL 329 (465)
T ss_dssp CSS-------TT---SEEEEEEGGG-SSEEE-SSSTTSEEEHHHHHHHHHHHH-----C---------CGCC-EEEECHT
T ss_pred hcc-----CCCccCeeEEEEEEcCccccccccCCCCcccccccccccccccccccc-cc---------cccccccccccc
Confidence 775 799999999999999999999999999999999999999988765431 11 11122355543
Q ss_pred -CcccccCccEEEEEeecCCCCCChHHHHHHHHHHHHHHhCCCccCCceeEEEecCCHHHHHHHHHcChHHHHHhcCcEE
Q 003797 321 -QPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHI 399 (795)
Q Consensus 321 -~~~~l~~g~V~~a~IGSCTN~~~~dl~~aA~lLa~~A~~~G~kv~~~V~~~v~PgS~~V~~~l~~~Gl~~~l~~aGa~i 399 (795)
...++.+.+|++||||||||||+|||++||++|+++|. +||+|+|+++|+|||++|+++|+++||+++|+++||.|
T Consensus 330 ~~~~~~~~~~i~~~~IgSCTn~~~~dl~~aA~il~~~~~---~~v~~~v~~~v~PgS~~v~~~~~~~Gl~~~l~~aG~~v 406 (465)
T PF00330_consen 330 KPGQELEGTKIDQAFIGSCTNGRNEDLRAAAGILKGKAV---LKVAPGVKTSVVPGSRQVYEQLEREGLLEILEEAGFEV 406 (465)
T ss_dssp TEEEEEETTBEEEEEEETTTSCTHHHHHHHHHHHHHHHC---TTS-TSSEEEEE-SBHHHHHHHHHTTHHHHHHHTTEEE
T ss_pred cccccccceeeeEEEEcCCcCCCHHHHHHHHHHhhchhh---ccCcceeEEEEcCCCHHHHHHHHHcCCchhhhccceEE
Confidence 23578899999999999999999999999999977766 69999999999999999999999999999999999999
Q ss_pred eccCCccccCCCCCCChhhhccccC-CceeEEEEeccCCCCCCCCCCccCCccccCHHHHHHHHHhC
Q 003797 400 VGYGCTTCIGNSGDLDESVASTITD-NDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAG 465 (795)
Q Consensus 400 ~~~gCg~CiG~~g~l~~~~~~~i~~-~~~~~~~vss~NRNF~GR~g~~~~~~yLaSP~~vaA~AlaG 465 (795)
.+||||+|+|+++ +.+. +.+ ++ ++|||+||||+||||+..+++|||||++||||||+|
T Consensus 407 ~~~gC~~C~G~~~-~~~~----~~~~~~---~~vst~NRNF~GR~g~~~~~~yLaSP~~vaA~Ai~G 465 (465)
T PF00330_consen 407 RGPGCGPCIGMSG-LPDV----LAPLGE---VCVSTSNRNFEGRMGPKDATVYLASPATVAASAIAG 465 (465)
T ss_dssp --SSSGGGGTSBS---CC----HCCTTE---EEEESSSS-CTTTTTTTTTEEEE--HHHHHHHHHHS
T ss_pred ecCCccEEECCCC-CCcc----cccccc---eEEEecCCCCCCCCCCCcCeEEECCHHHHHHHHhcC
Confidence 9999999999985 2211 122 44 378999999999999999999999999999999998
No 21
>cd01583 IPMI 3-isopropylmalate dehydratase catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate. Aconatase-like catalytic domain of 3-isopropylmalate dehydratase and related uncharacterized proteins. 3-isopropylmalate dehydratase catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate 3-isopropylmalate. IPMI is involved in fungal and bacterial leucine biosynthesis and is also found in eukaryotes.
Probab=100.00 E-value=7.5e-113 Score=936.48 Aligned_cols=367 Identities=27% Similarity=0.431 Sum_probs=335.2
Q ss_pred HHHHhcCCCCCccCCCCceEEEecccccCCCCCchhHHHHHHHHHHHHhhhhhhhhhhhccccCcceeeCC-CCceeccc
Q 003797 3 DAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTRSENAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPP-GSGIVHQV 81 (795)
Q Consensus 3 ~~~~~~g~~~~~~~P~~pv~lviDH~v~~~~~~~~~a~~~n~~~e~~rn~e~~~fl~~~~~~f~~~~~~~p-g~GI~Hqv 81 (795)
+.++++|.+ +.+||.+ +++++||++|++. ....|+.+++.+|.++|. |+++++ |+|||||+
T Consensus 14 ~~~~~~g~~-~v~dp~k-~~~~~DH~vp~~~-----~~~~~~~~~~r~~a~~~g-----------i~~~~~~g~GI~H~v 75 (382)
T cd01583 14 EGLREAGRE-KVWDPEK-IVAVFDHNVPTPD-----IKAAEQVKTLRKFAKEFG-----------INFFDVGRQGICHVI 75 (382)
T ss_pred HHHHHhCCc-ccCCCCc-eEEEcCCCCCCCC-----HHHHHHHHHHHHHHHHhC-----------cccccCCCCCEeeEE
Confidence 467788874 7899999 9999999999973 335566666666666553 334556 89999999
Q ss_pred hhccccceeccCCCcccC-CeEEecCCCcCCcCccccccccccHHHHHHHHccCceeecCCceEEEEEecccCCCcchhh
Q 003797 82 NLEYLGRVVFNTNGMLYP-DSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGVTATD 160 (795)
Q Consensus 82 ~~E~~a~~v~~~~G~~~P-~~vvGtDSHT~~~GalG~la~GvGg~e~~~~m~g~~~~~~vPevv~V~l~G~l~~gVtakD 160 (795)
++| +|++.| +++|||||||||+||||+||||||++|++.+|+||++||++||+|+|+|+|+|++||++||
T Consensus 76 ~~E---------~g~~~PG~~ivg~DSHT~t~GalGa~a~GvG~td~a~~latg~~w~~vPeti~v~l~G~l~~gV~aKD 146 (382)
T cd01583 76 LPE---------KGLTLPGMTIVGGDSHTCTHGAFGAFATGIGTTDVAHVLATGKLWFRVPETMRVNVEGKLPPGVTAKD 146 (382)
T ss_pred ecc---------ccEecCCcEEEecCCCcccCCeeeeEEEccCHHHHHHHHhcCCeeeeCCcEEEEEEEeecCCCcCHHH
Confidence 999 788899 6899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCccceEEEEecCCCCCCChhhhhhhhccccccCCceeeecCCHHHHHHHhhcCCChhHHHHHHHHHHH
Q 003797 161 LVLTVTQMLRKHGVVGKFVEFHGDGMGELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVAMVEGYLRA 240 (795)
Q Consensus 161 viL~i~~~l~~~G~~g~~vEf~G~gv~~Ls~~~R~TI~NMa~E~GA~~~~fp~D~~t~~YL~~~gr~~~~~~~~~~y~~~ 240 (795)
|||+|+++|+.+|++||+|||+|+||++||+++|||||||++|+||++||||+|++|++||+.++|..- +
T Consensus 147 viL~ii~~lg~~g~~g~~vEf~G~~v~~Ls~~~R~Ti~NMa~E~GA~~gi~~~De~t~~yL~~~~~~~~--~-------- 216 (382)
T cd01583 147 VILYIIGKIGVDGATYKAMEFAGEAIESLSMEERMTLCNMAIEAGAKAGIVAPDETTFEYLKGRGKAYW--K-------- 216 (382)
T ss_pred HHHHHHHHhccCCccceEEEEEcCccccCCHHHHhhHhccccccCceEEEecCChHHHHHHHhcCccch--h--------
Confidence 999999999999999999999999999999999999999999999999999999999999999887621 1
Q ss_pred hhhcccCCCCCCCCcccEEEEEECCCcccceecCCCCCCccccCccchhhhhhhcccccCCCCCCCccccccceeeecCC
Q 003797 241 NKMFVDYNEPQQERVYSSYLELNLADVEPCISGPKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHG 320 (795)
Q Consensus 241 ~~l~~~~~~~D~~a~Y~~vieiDLs~leP~vA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g 320 (795)
.+ .+|++|.|+++++||||+|||+||+|++|+|++||+|+.+
T Consensus 217 --~~----~~D~~a~Y~~~~~iDls~leP~va~P~~P~nv~~v~e~~~-------------------------------- 258 (382)
T cd01583 217 --EL----KSDEDAEYDKVVEIDASELEPQVAWPHSPDNVVPVSEVEG-------------------------------- 258 (382)
T ss_pred --hc----CCCCCCCEEEEEEEEcccceeeEecCCCccceEECcccCC--------------------------------
Confidence 22 4899999999999999999999999999999999999863
Q ss_pred CcccccCccEEEEEeecCCCCCChHHHHHHHHHHHHHHhCCCccCCceeEEEecCCHHHHHHHHHcChHHHHHhcCcEEe
Q 003797 321 QPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIV 400 (795)
Q Consensus 321 ~~~~l~~g~V~~a~IGSCTN~~~~dl~~aA~lLa~~A~~~G~kv~~~V~~~v~PgS~~V~~~l~~~Gl~~~l~~aGa~i~ 400 (795)
-+|++||||||||||+|||++||++| ||+||+|+||++|+|||++|+++|+++|++++|+++||.|.
T Consensus 259 -------~~Id~v~IGSCTNgr~eDl~~AA~iL------kG~kv~~~Vr~~v~P~S~~V~~~~~~~G~~~~l~~aGa~i~ 325 (382)
T cd01583 259 -------IKIDQVFIGSCTNGRLEDLRAAAEIL------KGRKVADGVRLIVVPASQRVYKQAEKEGLIEIFIEAGAEVR 325 (382)
T ss_pred -------cceeEEEEeccCCCChHHHHHHHHHh------cCCCCCCCccEEEECCCHHHHHHHHHCCcHHHHHHCCCEEe
Confidence 13779999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred ccCCccccCCCCCCChhhhccccCCceeEEEEeccCCCCCCCCCCccCCccccCHHHHHHHHHhCcc
Q 003797 401 GYGCTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTV 467 (795)
Q Consensus 401 ~~gCg~CiG~~g~l~~~~~~~i~~~~~~~~~vss~NRNF~GR~g~~~~~~yLaSP~~vaA~AlaG~I 467 (795)
+||||+|+|+++++.. +||+ +|||+||||+||||+..+.+|||||++||||||+|+|
T Consensus 326 ~pgCg~C~G~~~g~~~-------~ge~---~vsT~NRNF~GRmG~~~~~~yLaSP~~vAAsAi~G~i 382 (382)
T cd01583 326 PPGCGACLGGHMGVLA-------PGER---CVSTSNRNFKGRMGSPGARIYLASPATAAASAITGEI 382 (382)
T ss_pred CCCcccccCCCCCcCC-------CCCE---EEEecCCCCCcCCCCCCCcEEECCHHHHHHHHhcccC
Confidence 9999999999876543 4665 6899999999999998889999999999999999987
No 22
>cd01585 AcnA_Bact Aconitase catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Bacterial Aconitase-like catalytic domain. Aconitase (aconitate hydratase or citrate hydrolyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediate product during the course of the reaction. This distinct subfamily is found only in bacteria and Archaea. Its exact characteristics are not known.
Probab=100.00 E-value=1.2e-111 Score=924.19 Aligned_cols=365 Identities=35% Similarity=0.573 Sum_probs=335.4
Q ss_pred HHHHhcCCCCCccCCCCceEEEecccccCCCCCchhHHHHHHHHHHHHhhhhhhhhhhhccccCcceeeCCCCceeccch
Q 003797 3 DAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTRSENAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGSGIVHQVN 82 (795)
Q Consensus 3 ~~~~~~g~~~~~~~P~~pv~lviDH~v~~~~~~~~~a~~~n~~~e~~rn~e~~~fl~~~~~~f~~~~~~~pg~GI~Hqv~ 82 (795)
+.|+++|.+ ++++| . +.+++||++|+.. .+|.++|+|++|.+++| +|+|++||+|||||++
T Consensus 15 ~~~~~~g~~-~v~~~-~-~~~~~DH~~p~~~---------------~~~a~~~~~lr~~a~~~-gi~~~~~g~GI~H~v~ 75 (380)
T cd01585 15 LQFEAMGVD-RVRTE-L-SVSYVDHNTLQTD---------------FENADDHRFLQTVAARY-GIYFSRPGNGICHQVH 75 (380)
T ss_pred HHHHHcCCC-eeCCC-C-eEEEeCCCCCCCC---------------hHHHHHHHHHHHHHHHc-CCEEECCCCCeeeeec
Confidence 457788885 66777 5 8899999999953 24567788888888888 6899999999999999
Q ss_pred hccccceeccCCCcccC-CeEEecCCCcCCcCccccccccccHHHHHHHHccCceeecCCceEEEEEecccCCCcchhhH
Q 003797 83 LEYLGRVVFNTNGMLYP-DSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGVTATDL 161 (795)
Q Consensus 83 ~E~~a~~v~~~~G~~~P-~~vvGtDSHT~~~GalG~la~GvGg~e~~~~m~g~~~~~~vPevv~V~l~G~l~~gVtakDv 161 (795)
+|+ ++.| +++|||||||||+||||+||||||++|++.+|+||++||++||+|+|+|+|+|++||++|||
T Consensus 76 ~E~----------~~~PG~~ivg~DSHT~t~GalGa~a~GvG~td~~~~latg~~~~~vPetv~V~l~G~l~~gV~aKDv 145 (380)
T cd01585 76 LER----------FAVPGKTLLGSDSHTPTAGGLGMLAIGAGGLDVALAMAGEPYYIPMPKVVGVRLTGELPPWVTAKDV 145 (380)
T ss_pred Hhh----------ccCCCCEEEecCcCcCCCCcccccEEccCHHHHHHHHhCCeEeccCCcEEEEEEEccCCCCcCHHHH
Confidence 994 4556 68999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCccceEEEEecCCCCCCChhhhhhhhccccccCCceeeecCCHHHHHHHhhcCCChhHHHHHHHHHHHh
Q 003797 162 VLTVTQMLRKHGVVGKFVEFHGDGMGELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVAMVEGYLRAN 241 (795)
Q Consensus 162 iL~i~~~l~~~G~~g~~vEf~G~gv~~Ls~~~R~TI~NMa~E~GA~~~~fp~D~~t~~YL~~~gr~~~~~~~~~~y~~~~ 241 (795)
||+|+++|+.+|++||+|||+|||+++||+++|||||||++|+||+++|||+|++|++||+.+||.+.+..
T Consensus 146 iL~li~~lg~~g~~~~~iEf~G~~i~~Ls~~~R~Tl~NMa~E~GA~~gi~~~De~t~~yl~~~gr~~~~~~--------- 216 (380)
T cd01585 146 ILELLRRLTVKGGVGKIFEYTGPGVATLSVPERATITNMGAELGATTSIFPSDERTREFLAAQGREDDWVE--------- 216 (380)
T ss_pred HHHHHHHhCcccccceEEEEeCCcccccCHHHHhhhhccccccCceEEEecCcHHHHHHHHhcCCchhccc---------
Confidence 99999999999999999999999999999999999999999999999999999999999999988654311
Q ss_pred hhcccCCCCCCCCcccEEEEEECCCcccceecCCCCCCccccCccchhhhhhhcccccCCCCCCCccccccceeeecCCC
Q 003797 242 KMFVDYNEPQQERVYSSYLELNLADVEPCISGPKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHGQ 321 (795)
Q Consensus 242 ~l~~~~~~~D~~a~Y~~vieiDLs~leP~vA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~ 321 (795)
+ .+|++|.|+++++||||+|||+||+|++|+|++||+|++.
T Consensus 217 -l-----~~D~~a~Y~~~i~iDls~leP~va~P~~pd~v~pv~~~~g--------------------------------- 257 (380)
T cd01585 217 -L-----AADADAEYDEEIEIDLSELEPLIARPHSPDNVVPVREVAG--------------------------------- 257 (380)
T ss_pred -c-----CCCCCCceEEEEEEEcccceeeecCCCCCCceeEhhhhCC---------------------------------
Confidence 1 4899999999999999999999999999999999999862
Q ss_pred cccccCccEEEEEeecCCCCCChHHHHHHHHHHHHHHhCCCccCCceeEEEecCCHHHHHHHHHcChHHHHHhcCcEEec
Q 003797 322 PAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVG 401 (795)
Q Consensus 322 ~~~l~~g~V~~a~IGSCTN~~~~dl~~aA~lLa~~A~~~G~kv~~~V~~~v~PgS~~V~~~l~~~Gl~~~l~~aGa~i~~ 401 (795)
-+|++||||||||||+|||++||++| ||+||+|+||++|+|||++|+++|+++|++++|+++||.|.+
T Consensus 258 ------~~Id~~~IGSCTngr~eDl~~aA~iL------kG~kv~~~V~~~v~P~S~~V~~~a~~~Gl~~~l~~aGa~i~~ 325 (380)
T cd01585 258 ------IKVDQVAIGSCTNSSYEDLMTVAAIL------KGRRVHPHVSMVVAPGSKQVLEMLARNGALADLLAAGARILE 325 (380)
T ss_pred ------ceEEEEEEecCCCCCcHHHHHHHHHH------cCCCCCCCceEEEECCCHHHHHHHHHCCcHHHHHHcCCEEeC
Confidence 13789999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred cCCccccCCCCCCChhhhccccCCceeEEEEeccCCCCCCCCCCccCCccccCHHHHHHHHHhCcc
Q 003797 402 YGCTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTV 467 (795)
Q Consensus 402 ~gCg~CiG~~g~l~~~~~~~i~~~~~~~~~vss~NRNF~GR~g~~~~~~yLaSP~~vaA~AlaG~I 467 (795)
|||++|+|+++.+. +|++ +|||+||||+||||+..+.+|||||++||||||+|+|
T Consensus 326 pgCg~C~G~~~~~~--------~ge~---~vsT~NRNF~GRmG~~~~~~yLaSP~~vaAsAi~G~i 380 (380)
T cd01585 326 SACGPCIGMGQAPP--------TGGV---SVRTFNRNFEGRSGTKDDLVYLASPEVAAAAALTGVI 380 (380)
T ss_pred CCceeccCCCCCCC--------CCcE---EEEccCCCCCccCCCCCCcEEeCCHHHHHHHHhCccC
Confidence 99999999976532 3554 6899999999999998889999999999999999987
No 23
>COG0065 LeuC 3-isopropylmalate dehydratase large subunit [Amino acid transport and metabolism]
Probab=100.00 E-value=1.5e-110 Score=897.21 Aligned_cols=372 Identities=30% Similarity=0.476 Sum_probs=333.1
Q ss_pred HHHHhcCCCCCccCCCCceEEEecccccCCCCCchhHHHHHHHHHHHHhhhhhhhhhhhccccCcceeeCCC-Cceeccc
Q 003797 3 DAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTRSENAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPG-SGIVHQV 81 (795)
Q Consensus 3 ~~~~~~g~~~~~~~P~~pv~lviDH~v~~~~~~~~~a~~~n~~~e~~rn~e~~~fl~~~~~~f~~~~~~~pg-~GI~Hqv 81 (795)
+.|+++|. ++++|.+ +.+++||++|+++.. .+.+++.+++|.+ +| ++ +.|++.| +||||||
T Consensus 44 ~~lr~~g~--kV~~p~k-~~~~~DH~vPt~~~~--~a~~~~~lr~~~k---e~-----Gi-----~~~~~~g~~GI~H~v 105 (423)
T COG0065 44 EGLREAGR--KVRDPEK-TVATFDHNVPTPDIK--AAEQQKELRENAK---EF-----GI-----VNFYDVGDQGIVHQV 105 (423)
T ss_pred HHHHHhCC--cccCccc-eEEEecCCCCCccHH--HHHHHHHHHHHHH---Hh-----CC-----eeeecCCCCcEEEEE
Confidence 45778887 8899999 999999999998664 3334444444444 33 22 4456778 9999999
Q ss_pred hhccccceeccCCCcccC-CeEEecCCCcCCcCccccccccccHHHHHHHHccCceeecCCceEEEEEecccCCCcchhh
Q 003797 82 NLEYLGRVVFNTNGMLYP-DSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGVTATD 160 (795)
Q Consensus 82 ~~E~~a~~v~~~~G~~~P-~~vvGtDSHT~~~GalG~la~GvGg~e~~~~m~g~~~~~~vPevv~V~l~G~l~~gVtakD 160 (795)
.+| +|++.| ++|||+||||||+||||+||+|+|++|++.+|++|++|+++||+++|+++|+|++||||||
T Consensus 106 ~pE---------~G~~~PG~~Iv~gDSHT~T~GAfGAfA~GiGttdva~vlatg~lw~~vpktm~v~v~G~l~~gV~aKD 176 (423)
T COG0065 106 GPE---------QGLTLPGMTIVGGDSHTCTHGAFGAFAFGIGTTDVAHVLATGKLWFRVPKTMKVEVEGKLPPGVTAKD 176 (423)
T ss_pred ecc---------ccccCCCcEEEecccCcccchhhhhhhccccHHHHHHHHHhCceeeeccceEEEEEecccCCCccHHH
Confidence 999 999999 5899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCccceEEEEecCCCCCCChhhhhhhhccccccCCceeeecCCHHHHHHHhhcCCChhHHHHHHHHHHH
Q 003797 161 LVLTVTQMLRKHGVVGKFVEFHGDGMGELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVAMVEGYLRA 240 (795)
Q Consensus 161 viL~i~~~l~~~G~~g~~vEf~G~gv~~Ls~~~R~TI~NMa~E~GA~~~~fp~D~~t~~YL~~~gr~~~~~~~~~~y~~~ 240 (795)
|||+||++++.+|++|+++||+|+.+++|||++|||||||++|+||++|+|+||++|++||+... ++
T Consensus 177 iiL~iIg~iG~~g~t~~aiEf~Ge~i~~lsme~RmTicNMaIE~GAkaGii~pDe~T~~Y~k~~~-------------~a 243 (423)
T COG0065 177 IILALIGKIGVDGGTGYAIEFAGEAIRSLSMEGRMTLCNMAIEAGAKAGIIAPDETTFEYLKEWD-------------GA 243 (423)
T ss_pred HHHHHHHHhccCCcceEEEEEeccchhhCChhhhhhhhhhhhhhcccceeeCCcHhHHHHHHHHh-------------cc
Confidence 99999999999999999999999999999999999999999999999999999999999999421 12
Q ss_pred hhhcccCCCCCCCCcccEEEEEECCCcccceecCCCCCCccccCccchhhhhhhcccccCCCCCCCccccccceeeecCC
Q 003797 241 NKMFVDYNEPQQERVYSSYLELNLADVEPCISGPKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHG 320 (795)
Q Consensus 241 ~~l~~~~~~~D~~a~Y~~vieiDLs~leP~vA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g 320 (795)
...|+.. .+|+||.|+++|+||+|+|+|+||||++|+|+++|+|+.++ +
T Consensus 244 ~~~~~~l-~sD~dA~y~~~v~~d~s~leP~Va~p~~p~nv~~v~e~~~~--------------~---------------- 292 (423)
T COG0065 244 VAYWKTL-KSDEDAVYDKVVELDASDLEPQVAWPTNPDNVVPVSEVEPD--------------P---------------- 292 (423)
T ss_pred cccccee-cCCCCCceeEEEEEEcccCCceeeCCCCcccceecccccCC--------------c----------------
Confidence 2244432 68999999999999999999999999999999999998631 0
Q ss_pred CcccccCccEEEEEeecCCCCCChHHHHHHHHHHHHHHhCCCccCCceeEEEecCCHHHHHHHHHcChHHHHHhcCcEEe
Q 003797 321 QPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIV 400 (795)
Q Consensus 321 ~~~~l~~g~V~~a~IGSCTN~~~~dl~~aA~lLa~~A~~~G~kv~~~V~~~v~PgS~~V~~~l~~~Gl~~~l~~aGa~i~ 400 (795)
-.|+++|||||||||++||++||++| ||+||+++||++|+|||+.|+++++++||+++|.+|||.|.
T Consensus 293 -------i~iDqVFIGSCTNgRieDLr~AA~Il------kgrkva~~Vr~iVvP~S~~V~~qA~~eGl~~if~~AG~~~~ 359 (423)
T COG0065 293 -------IKIDQVFIGSCTNGRIEDLRAAAEIL------KGRKVAPGVRAIVVPGSRRVKEQAEKEGLDKIFIEAGFEWR 359 (423)
T ss_pred -------eeeceEEEeccCCccHHHHHHHHHHh------ccCccCCCceEEEecCcHHHHHHHHHccHHHHHHhcCcEEc
Confidence 13779999999999999999999999 89999999999999999999999999999999999999999
Q ss_pred ccCCccccCCCCCCChhhhccccCCceeEEEEeccCCCCCCCCCCccCCccccCHHHHHHHHHhCccc
Q 003797 401 GYGCTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVD 468 (795)
Q Consensus 401 ~~gCg~CiG~~g~l~~~~~~~i~~~~~~~~~vss~NRNF~GR~g~~~~~~yLaSP~~vaA~AlaG~I~ 468 (795)
.||||||+|+|.++.++ ||+ |+||+||||+||||+..+.+||+||+++||+|++|+|+
T Consensus 360 ~pgCg~CLg~~~gvL~~-------gE~---c~STSNRNF~GRqG~~~a~~~L~SPA~AAAaAv~G~i~ 417 (423)
T COG0065 360 EPGCGPCLGMHPGVLGP-------GER---CASTSNRNFEGRQGSPGARTYLASPAMAAAAAVEGEIV 417 (423)
T ss_pred CCCCccccccCCCcCCC-------CCE---EeeccCCCCCccCCCCCCeEEecCHHHHHHHHhhCEec
Confidence 99999999999665544 454 57999999999999777889999999999999999995
No 24
>TIGR01343 hacA_fam homoaconitate hydratase family protein. This model represents a subfamily of proteins consisting of aconitase, homoaconitase, 3-isopropylmalate dehydratase, and uncharacterized proteins. The majority of the members of this family have been designated as 3-isopropylmalate dehydratase large subunit (LeuC) in microbial genome annotation, but the only characterized member is Thermus thermophilus homoaconitase, an enzyme of a non-aspartate pathway of Lys biosynthesis.
Probab=100.00 E-value=4.7e-110 Score=919.83 Aligned_cols=368 Identities=28% Similarity=0.459 Sum_probs=336.5
Q ss_pred HHHHhcCCCCCccCCCCceEEEecccccCCCCCchhHHHHHHHHHHHHhhhhhhhhhhhccccCcce-eeCCCCceeccc
Q 003797 3 DAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTRSENAVKANMELEFQRNKERFAFLKWGSSAFHNML-VVPPGSGIVHQV 81 (795)
Q Consensus 3 ~~~~~~g~~~~~~~P~~pv~lviDH~v~~~~~~~~~a~~~n~~~e~~rn~e~~~fl~~~~~~f~~~~-~~~pg~GI~Hqv 81 (795)
+.|+++|. .++++|.+ +.+++||++|+.... .+..++..++|+|+ + +|. |+++|+|||||+
T Consensus 40 ~~~~~~g~-~~v~~P~~-v~~~~DH~~p~~~~~--~a~~~~~~r~fa~~--------~------gi~~~~~~g~GI~H~v 101 (412)
T TIGR01343 40 RRLEEYGI-DKVFDPER-IVIVVDHVVPASTIK--AAEMQKLAREFVKK--------T------GIKHFFDVGEGICHQV 101 (412)
T ss_pred HHHHHcCC-CcCCCCCc-EEEEcCCCCCCCChh--HHHHHHHHHHHHHH--------c------CCceeecCCCCEEEEE
Confidence 46778887 48899999 999999999997653 45567778888874 2 343 688999999999
Q ss_pred hhccccceeccCCCcccC-CeEEecCCCcCCcCccccccccccHHHHHHHHccCceeecCCceEEEEEecccCCCcchhh
Q 003797 82 NLEYLGRVVFNTNGMLYP-DSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGVTATD 160 (795)
Q Consensus 82 ~~E~~a~~v~~~~G~~~P-~~vvGtDSHT~~~GalG~la~GvGg~e~~~~m~g~~~~~~vPevv~V~l~G~l~~gVtakD 160 (795)
++| +|++.| ++++||||||||+||||+||||||++|++.+|++|++||++||+|+|+|+|+|++||++||
T Consensus 102 ~~E---------~g~~~PG~~iig~DSHT~t~GalGa~a~GvG~td~a~~~atg~~w~~vPe~i~v~l~G~l~~gV~akD 172 (412)
T TIGR01343 102 LPE---------EGLVKPGDLVVGADSHTCTYGALGAFATGMGSTDIAYAIATGKTWFRVPESMKVTLTGKLNPGVTAKD 172 (412)
T ss_pred chh---------hCcCCCCcEEEecCCCcCCcCchhheeecccHHHHHHHHhcCcEeecCCcEEEEEEEcccCCCcCHHH
Confidence 999 889999 6899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCccceEEEEecCCCCCCChhhhhhhhccccccCCceeeecCCHHHHHHHhhcCCChhHHHHHHHHHHH
Q 003797 161 LVLTVTQMLRKHGVVGKFVEFHGDGMGELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVAMVEGYLRA 240 (795)
Q Consensus 161 viL~i~~~l~~~G~~g~~vEf~G~gv~~Ls~~~R~TI~NMa~E~GA~~~~fp~D~~t~~YL~~~gr~~~~~~~~~~y~~~ 240 (795)
|||+|+++|+.+|++||+|||+|||+++||+++|||||||++|+||+++|||+|++|++||+.++|.+. +
T Consensus 173 viL~li~~~g~~g~~~~~vEf~G~~i~~Ls~~~R~ti~NMa~E~GA~~~i~~~De~t~~yl~~~~~~~~--~-------- 242 (412)
T TIGR01343 173 VILEVIGQIGVDGATYMAMEFHGETIKNMTMEERMTLANMAIEAGGKTGIIEPDEKTRAYLKERYKEPF--R-------- 242 (412)
T ss_pred HHHHHHHHhCcCCcceEEEEEECCcccccCHHHHhhhhccccccCceeeEecCcHHHHHHHHhhCcccc--c--------
Confidence 999999999999999999999999999999999999999999999999999999999999999876431 1
Q ss_pred hhhcccCCCCCCCCcccEEEEEECCCcccceecCCCCCCccccCccchhhhhhhcccccCCCCCCCccccccceeeecCC
Q 003797 241 NKMFVDYNEPQQERVYSSYLELNLADVEPCISGPKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHG 320 (795)
Q Consensus 241 ~~l~~~~~~~D~~a~Y~~vieiDLs~leP~vA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g 320 (795)
.+ .+|++|.|+++++||||+|||+||+|++|+|++||+|+..
T Consensus 243 --~~----~~D~da~Y~~~i~iDls~leP~va~P~~Pdnv~~v~~~~g-------------------------------- 284 (412)
T TIGR01343 243 --VY----KSDEDAEYAKEVEIDASQLEPVVAAPHNVDNVHPVSEVEG-------------------------------- 284 (412)
T ss_pred --cc----CCCCCCCEEEEEEEEcccceeeEecCCCCCcEEEhHHhCC--------------------------------
Confidence 12 4899999999999999999999999999999999999862
Q ss_pred CcccccCccEEEEEeecCCCCCChHHHHHHHHHHHHHHhCCCccCCceeEEEecCCHHHHHHHHHcChHHHHHhcCcEEe
Q 003797 321 QPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIV 400 (795)
Q Consensus 321 ~~~~l~~g~V~~a~IGSCTN~~~~dl~~aA~lLa~~A~~~G~kv~~~V~~~v~PgS~~V~~~l~~~Gl~~~l~~aGa~i~ 400 (795)
-.|+|||||||||||++||++||++| +|+||+|+||++|+|||++|+++|+++|++++|.++||.|.
T Consensus 285 -------~~id~~~IGSCTngr~~Dl~~aA~il------~G~kv~~~v~~~v~P~S~~V~~~~~~~G~~~~l~~aG~~i~ 351 (412)
T TIGR01343 285 -------IEVDQVFIGSCTNGRIEDLRVAAKIL------KGRKVAPDVRLIVIPASRAVYLQALKEGLIEIFVKAGAVVS 351 (412)
T ss_pred -------CeeeEEEEecCCCCChHHHHHHHHHH------cCCCCCCCCCEEEeCCCHHHHHHHHHcCcHHHHHHcCCEEc
Confidence 13779999999999999999999999 89999999999999999999999999999999999999999
Q ss_pred ccCCccccCCCCCCChhhhccccCCceeEEEEeccCCCCCCCCCCccCCccccCHHHHHHHHHhCccc
Q 003797 401 GYGCTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVD 468 (795)
Q Consensus 401 ~~gCg~CiG~~g~l~~~~~~~i~~~~~~~~~vss~NRNF~GR~g~~~~~~yLaSP~~vaA~AlaG~I~ 468 (795)
+||||+|+|++....+ +|++ +|||+||||+||||+..+.+|||||++||||||+|+|+
T Consensus 352 ~pgCg~C~G~~~g~l~-------~ge~---~vsT~NRNF~GR~G~~~~~~yLaSP~~vaAsAi~G~it 409 (412)
T TIGR01343 352 TPGCGPCLGRHQGVLA-------PGEV---CISTSNRNFKGRMGDPNAEIYLASPATAAASAVKGRIA 409 (412)
T ss_pred CCccccccCcCCCcCC-------CCCE---EEEecCCCCCCCCCCCCCcEEECCHHHHHHHHhCcccC
Confidence 9999999999744332 3554 68999999999999988889999999999999999996
No 25
>TIGR02086 IPMI_arch 3-isopropylmalate dehydratase, large subunit. This subfamily is a subset of the larger HacA family (Homoaconitate hydratase family, TIGR01343) and is most closely related to the 3-isopropylmalate dehydratase, large subunits which form TIGR00170. This subfamily includes the members of TIGR01343 which are gene clustered with other genes of leucine biosynthesis. The rest of the subfamily includes mainly archaeal species which exhibit two hits to this model. In these cases it is possible that one or the other of the hits does not have a 3-isopropylmalate dehydratase activity but rather one of the other related aconitase-like activities.
Probab=100.00 E-value=1.7e-109 Score=915.33 Aligned_cols=367 Identities=29% Similarity=0.441 Sum_probs=336.8
Q ss_pred HHHHhcCCCCCccCCCCceEEEecccccCCCCCchhHHHHHHHHHHHHhhhhhhhhhhhccccCcceeeCCCCceeccch
Q 003797 3 DAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTRSENAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGSGIVHQVN 82 (795)
Q Consensus 3 ~~~~~~g~~~~~~~P~~pv~lviDH~v~~~~~~~~~a~~~n~~~e~~rn~e~~~fl~~~~~~f~~~~~~~pg~GI~Hqv~ 82 (795)
+.|+++| .++++|.+ +.+++||++|+.... .+..++..++|.|. | ++.+++||+|||||++
T Consensus 41 ~~~~~~g--~~v~~p~~-~~~~~DH~~p~~~~~--~a~~~~~~r~fa~~-------------~-gi~~~~~g~GI~H~v~ 101 (412)
T TIGR02086 41 ETLRELG--ARVEDPEK-IVIFFDHVVPPPTVE--AANRQKEIREFAKE-------------H-GIPVFDVGEGICHQVL 101 (412)
T ss_pred HHHHHcC--CcccCCCC-EEEECCCCCCCCCHH--HHHHHHHHHHHHHH-------------c-CCcEECCCCCeEeEEh
Confidence 5677888 68899999 999999999998653 44456667777663 2 4667899999999999
Q ss_pred hccccceeccCCCcccC-CeEEecCCCcCCcCccccccccccHHHHHHHHccCceeecCCceEEEEEecccCCCcchhhH
Q 003797 83 LEYLGRVVFNTNGMLYP-DSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGVTATDL 161 (795)
Q Consensus 83 ~E~~a~~v~~~~G~~~P-~~vvGtDSHT~~~GalG~la~GvGg~e~~~~m~g~~~~~~vPevv~V~l~G~l~~gVtakDv 161 (795)
+| .|+++| +++||+||||||+||||+||||||++|++.+|++|++|+++||+|+|+|+|+|++||++|||
T Consensus 102 ~E---------~G~~~PG~~iig~DSHT~t~GalGa~a~GvG~td~a~~latg~~~~~vPeti~v~l~G~l~~gV~aKDv 172 (412)
T TIGR02086 102 VE---------EGYAGPGMVVVGGDSHTCTSGAVGAFATGMGATDVAIALATGKTWLKVPESIKVVVEGKPEEGVTAKDV 172 (412)
T ss_pred hh---------cCccCCCcEEEecCCCccccchhhheeecccHHHHHHHHhcCCchhcCCCEEEEEEEccCCCCcCHHHH
Confidence 99 899999 57999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCccceEEEEecCCCCCCChhhhhhhhccccccCCceeeecCCHHHHHHHhhcCCChhHHHHHHHHHHHh
Q 003797 162 VLTVTQMLRKHGVVGKFVEFHGDGMGELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVAMVEGYLRAN 241 (795)
Q Consensus 162 iL~i~~~l~~~G~~g~~vEf~G~gv~~Ls~~~R~TI~NMa~E~GA~~~~fp~D~~t~~YL~~~gr~~~~~~~~~~y~~~~ 241 (795)
||+|++.|+.+|++||+|||+|+|+++||+++|||||||++|+||+++|||+|++|++||+.++|.+.
T Consensus 173 iL~li~~lg~~g~~~~~vEf~G~~v~~Ls~~~R~Ti~NMa~E~GA~~~i~~~D~~t~~yl~~~~~~~~------------ 240 (412)
T TIGR02086 173 ALHIVGELGADGATYMAIEFFGLPIEAMSMDERMTLCNMAVEAGAKAGIVVPDEETYEYLKKRRGYEF------------ 240 (412)
T ss_pred HHHHHHHhCcCccceeEEEEECccccccCHHHHhhhhhcccccCceeeEecCCHHHHHHHHhcCCccc------------
Confidence 99999999999999999999999999999999999999999999999999999999999999987541
Q ss_pred hhcccCCCCCCCCcccEEEEEECCCcccceecCCCCCCccccCccchhhhhhhcccccCCCCCCCccccccceeeecCCC
Q 003797 242 KMFVDYNEPQQERVYSSYLELNLADVEPCISGPKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHGQ 321 (795)
Q Consensus 242 ~l~~~~~~~D~~a~Y~~vieiDLs~leP~vA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~ 321 (795)
..| .+|++|.|+++++||||+|||+||+|++|+|++|++++..
T Consensus 241 ~~~----~~D~~a~Y~~~i~iDls~leP~va~P~~P~nv~~v~~~~~--------------------------------- 283 (412)
T TIGR02086 241 RIL----RPDPGAKYDDEIEIDLSDLEPLVAVPHSVDNVRPVSDVEG--------------------------------- 283 (412)
T ss_pred ccc----cCCCCCCEEEEEEEEccceeEEecCCCChHhcccchhhcc---------------------------------
Confidence 122 5899999999999999999999999999999999999862
Q ss_pred cccccCccEEEEEeecCCCCCChHHHHHHHHHHHHHHhCCCccCCceeEEEecCCHHHHHHHHHcChHHHHHhcCcEEec
Q 003797 322 PAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVG 401 (795)
Q Consensus 322 ~~~l~~g~V~~a~IGSCTN~~~~dl~~aA~lLa~~A~~~G~kv~~~V~~~v~PgS~~V~~~l~~~Gl~~~l~~aGa~i~~ 401 (795)
-+|++||||||||||++||++||++| ||+||+|+||++|+|||++|+++|+++|++++|.++||.|.+
T Consensus 284 ------~~id~~~IGSCTngr~~Dl~~aA~vL------kG~kv~~~v~~~v~P~S~~v~~~~~~~G~~~~~~~aGa~i~~ 351 (412)
T TIGR02086 284 ------TEIDQVFIGSCTNGRIEDLRIAAEIL------EGRRVHPDVRLIVVPASRKVYERALEEGIILTLIRAGAIICP 351 (412)
T ss_pred ------cceeEEEEeccCCCChHHHHHHHHHH------cCCCCCCCcCEEEeCCCHHHHHHHHHcCcHHHHHHcCCEEcC
Confidence 12678999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred cCCccccCCCCCCChhhhccccCCceeEEEEeccCCCCCCCCCCccCCccccCHHHHHHHHHhCccc
Q 003797 402 YGCTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVD 468 (795)
Q Consensus 402 ~gCg~CiG~~g~l~~~~~~~i~~~~~~~~~vss~NRNF~GR~g~~~~~~yLaSP~~vaA~AlaG~I~ 468 (795)
||||+|+|++..+.. +|++ +|||+||||+||||+..+.+|||||++||||||+|+|+
T Consensus 352 pgCg~C~G~~~g~~~-------~ge~---~vsT~NRNF~GR~G~~~~~~yLaSP~~aAAsAi~G~it 408 (412)
T TIGR02086 352 PGCGPCLGRHMGVLG-------DGEV---CVSTTNRNFRGRMGSPDAEIYLASPATAAASAVEGYIT 408 (412)
T ss_pred CccccccCcCCCcCC-------CCCE---EEEecCCCCCcCCCCCCCcEEECCHHHHHHHHhCCccC
Confidence 999999999855432 3565 68999999999999888889999999999999999996
No 26
>PRK00402 3-isopropylmalate dehydratase large subunit; Reviewed
Probab=100.00 E-value=3.7e-109 Score=914.17 Aligned_cols=368 Identities=31% Similarity=0.482 Sum_probs=334.7
Q ss_pred HHHHhcCCCCCccCCCCceEEEecccccCCCCCchhHHHHHHHHHHHHhhhhhhhhhhhccccCcce-eeCCCCceeccc
Q 003797 3 DAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTRSENAVKANMELEFQRNKERFAFLKWGSSAFHNML-VVPPGSGIVHQV 81 (795)
Q Consensus 3 ~~~~~~g~~~~~~~P~~pv~lviDH~v~~~~~~~~~a~~~n~~~e~~rn~e~~~fl~~~~~~f~~~~-~~~pg~GI~Hqv 81 (795)
+.++++|.+ ++++|.+ +.+++||++|+... ..+..++..++|.|+ | +|+ |+++|+|||||+
T Consensus 43 ~~~~~~g~~-~v~~P~~-~~~~~DH~~p~~~~--~~a~~~~~~r~fa~~-------------~-gi~~~~~~g~GI~H~v 104 (418)
T PRK00402 43 KEFEKIGGD-KVFDPSK-IVIVFDHFVPAKDI--KSAEQQKILREFAKE-------------Q-GIPNFFDVGEGICHQV 104 (418)
T ss_pred HHHHHcCCC-ccCCCCc-EEEECCCCCCCCCh--hhHHHHHHHHHHHHH-------------c-CCcceeCCCCCEeeEe
Confidence 456677774 7899999 99999999999865 344577778888773 2 354 678999999999
Q ss_pred hhccccceeccCCCcccC-CeEEecCCCcCCcCccccccccccHHHHHHHHccCceeecCCceEEEEEecccCCCcchhh
Q 003797 82 NLEYLGRVVFNTNGMLYP-DSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGVTATD 160 (795)
Q Consensus 82 ~~E~~a~~v~~~~G~~~P-~~vvGtDSHT~~~GalG~la~GvGg~e~~~~m~g~~~~~~vPevv~V~l~G~l~~gVtakD 160 (795)
++| +|+++| +++|||||||||+||||+||||||++|++.+|++|++||++||+|+|+|+|+|++||++||
T Consensus 105 ~~E---------~g~~~PG~~ivg~DSHT~t~GalG~~a~GvG~td~~~~l~tg~~~~~vPe~v~V~l~G~l~~gV~akD 175 (418)
T PRK00402 105 LPE---------KGLVRPGDVVVGADSHTCTYGALGAFATGMGSTDMAAAMATGKTWFKVPETIKVVLEGKLPPGVTAKD 175 (418)
T ss_pred hhh---------cCccCCCcEEEeCCCCccccCccceEEecccHHHHHHHHhcCcEEEcCCCEEEEEEEeecCCCcCHHH
Confidence 999 788999 5899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCccceEEEEecCCCCCCChhhhhhhhccccccCCceeeecCCHHHHHHHhhcCCChhHHHHHHHHHHH
Q 003797 161 LVLTVTQMLRKHGVVGKFVEFHGDGMGELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVAMVEGYLRA 240 (795)
Q Consensus 161 viL~i~~~l~~~G~~g~~vEf~G~gv~~Ls~~~R~TI~NMa~E~GA~~~~fp~D~~t~~YL~~~gr~~~~~~~~~~y~~~ 240 (795)
|||+|+++|+.+|++||+|||+|+|+++||+++|||||||++|+||+++|||+|++|++||+.+++.+ +
T Consensus 176 viL~li~~l~~~g~~~~~vEf~G~~i~~Ls~~~R~Ti~NM~~E~GA~~~i~~~D~~t~~yl~~~~~~~-~---------- 244 (418)
T PRK00402 176 VILHIIGDIGVDGATYKALEFTGETIEALSMDERMTLANMAIEAGAKAGIFAPDEKTLEYLKERAGRD-Y---------- 244 (418)
T ss_pred HHHHHHHHhCcCccceEEEEEECCccccCCHHHHhhhhhcccccCceeeEecCChHHHHHHHhhcccc-c----------
Confidence 99999999999999999999999999999999999999999999999999999999999999975332 1
Q ss_pred hhhcccCCCCCCCCcccEEEEEECCCcccceecCCCCCCccccCccchhhhhhhcccccCCCCCCCccccccceeeecCC
Q 003797 241 NKMFVDYNEPQQERVYSSYLELNLADVEPCISGPKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHG 320 (795)
Q Consensus 241 ~~l~~~~~~~D~~a~Y~~vieiDLs~leP~vA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g 320 (795)
.| ..+|++|.|+++++||||+|||+||+|++|+|++||+|+++
T Consensus 245 --~~---l~~D~~a~Y~~~i~iDls~leP~va~P~~Pdnv~~v~~~~g-------------------------------- 287 (418)
T PRK00402 245 --KP---WKSDEDAEYEEVYEIDLSKLEPQVAAPHLPDNVKPVSEVEG-------------------------------- 287 (418)
T ss_pred --cc---ccCCCCCCEEEEEEEEcccceeeeecCCCccceeEchhhCC--------------------------------
Confidence 11 14799999999999999999999999999999999999862
Q ss_pred CcccccCccEEEEEeecCCCCCChHHHHHHHHHHHHHHhCCCccCCceeEEEecCCHHHHHHHHHcChHHHHHhcCcEEe
Q 003797 321 QPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIV 400 (795)
Q Consensus 321 ~~~~l~~g~V~~a~IGSCTN~~~~dl~~aA~lLa~~A~~~G~kv~~~V~~~v~PgS~~V~~~l~~~Gl~~~l~~aGa~i~ 400 (795)
-+|++||||||||||+|||++||++| ||+||+|+||++|+|||++|+++|+++|++++|+++||.|.
T Consensus 288 -------~~id~~~IGSCTngr~eDl~~aA~il------~G~kv~~~V~~~v~PgS~~V~~~~~~~G~~~~l~~aGa~i~ 354 (418)
T PRK00402 288 -------TKVDQVFIGSCTNGRLEDLRIAAEIL------KGRKVAPGVRLIVIPASQKIYLQALKEGLIEIFVDAGAVVS 354 (418)
T ss_pred -------ceeeEEEEecCCCCChHHHHHHHHHH------cCCCCCCCccEEEeCCCHHHHHHHHHcCcHHHHHHcCCEEc
Confidence 13779999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred ccCCccccCCCCCCChhhhccccCCceeEEEEeccCCCCCCCCCCccCCccccCHHHHHHHHHhCccc
Q 003797 401 GYGCTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVD 468 (795)
Q Consensus 401 ~~gCg~CiG~~g~l~~~~~~~i~~~~~~~~~vss~NRNF~GR~g~~~~~~yLaSP~~vaA~AlaG~I~ 468 (795)
+||||+|+|++....+ +|++ +|||+||||+||||+..+.+|||||++||||||+|+|+
T Consensus 355 ~pgCg~C~G~~~g~~~-------~ge~---~vsT~NRNF~GR~G~~~~~~yLaSP~~vaAsAl~G~it 412 (418)
T PRK00402 355 TPTCGPCLGGHMGVLA-------PGEV---CLSTTNRNFKGRMGSPESEVYLASPAVAAASAVTGKIT 412 (418)
T ss_pred CCccccccCcCCCcCC-------CCCE---EEEecCCCCCCCCCCCCCeEEECCHHHHHHHHhCCeeC
Confidence 9999999998754332 3554 68999999999999888899999999999999999995
No 27
>TIGR02083 LEU2 3-isopropylmalate dehydratase, large subunit. This model along with TIGR00170 describe clades which consist only of LeuC sequences. Here, the genes from Pyrococcus furiosus, Clostridium acetobutylicum, Thermotoga maritima and others are gene clustered with related genes from the leucine biosynthesis pathway.
Probab=100.00 E-value=1e-108 Score=908.58 Aligned_cols=371 Identities=32% Similarity=0.498 Sum_probs=335.0
Q ss_pred HHHHhcCCCCCccCCCCceEEEecccccCCCCCchhHHHHHHHHHHHHhhhhhhhhhhhccccCcceeeCCCC-ceeccc
Q 003797 3 DAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTRSENAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGS-GIVHQV 81 (795)
Q Consensus 3 ~~~~~~g~~~~~~~P~~pv~lviDH~v~~~~~~~~~a~~~n~~~e~~rn~e~~~fl~~~~~~f~~~~~~~pg~-GI~Hqv 81 (795)
+.|+++|. +++++|.+ +.+++||++|+... ..+..++.+++|.|+ +++++ |+++|+ |||||+
T Consensus 42 ~~f~~~g~-~~V~dp~~-v~~~~DH~vpa~~~--~~a~~~~~~r~fa~~--------~gi~~-----f~d~g~~GI~H~v 104 (419)
T TIGR02083 42 KAFKEYGG-KKVFDPDR-VALVPDHFTPNKDI--KSAEQCKMMREFARE--------QGIEK-----FFEIGNMGIEHAL 104 (419)
T ss_pred HHHHHcCC-CcCCCCCC-EEEEeCCCCCCCCH--HHHHHHHHHHHHHHH--------cCCcc-----eecCCCcceeeee
Confidence 56778876 58899999 99999999999854 455578888888884 23333 456775 999999
Q ss_pred hhccccceeccCCCcccC-CeEEecCCCcCCcCccccccccccHHHHHHHHccCceeecCCceEEEEEecccCCCcchhh
Q 003797 82 NLEYLGRVVFNTNGMLYP-DSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGVTATD 160 (795)
Q Consensus 82 ~~E~~a~~v~~~~G~~~P-~~vvGtDSHT~~~GalG~la~GvGg~e~~~~m~g~~~~~~vPevv~V~l~G~l~~gVtakD 160 (795)
++| +|+++| +++||+||||||+||||+||||||++|++.+|++|++||+|||+|+|+|+|+|++||++||
T Consensus 105 ~~E---------~g~~~PG~~ivg~DSHT~t~Ga~Ga~a~GvG~td~a~~latg~~w~~vPetv~v~l~G~l~~gV~aKD 175 (419)
T TIGR02083 105 LPE---------EGIVKPGDLIIGADSHTCTYGALGAFATGVGSTDMAVGMATGKAWFRVPEAIKFVLKGKLKPWVTGKD 175 (419)
T ss_pred ccc---------cCccCCCeEEEecCCCccccCccceeEEccChHHHHHHHhcCCeeecCCCEEEEEEEeecCCCcCHHH
Confidence 999 899999 5799999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCccceEEEEecCCCCCCChhhhhhhhccccccCCceeeecCCHHHHHHHhhcCCChhHHHHHHHHHHH
Q 003797 161 LVLTVTQMLRKHGVVGKFVEFHGDGMGELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVAMVEGYLRA 240 (795)
Q Consensus 161 viL~i~~~l~~~G~~g~~vEf~G~gv~~Ls~~~R~TI~NMa~E~GA~~~~fp~D~~t~~YL~~~gr~~~~~~~~~~y~~~ 240 (795)
|||+|+++|+.+|++||+|||+|||+++||+++|||||||++|+||+++|||+|++|++||+.+++.+ .+
T Consensus 176 viL~l~~~lg~~G~~~~~iEf~G~~v~~ls~~~R~Tl~NMa~E~GA~~~i~~~D~~t~~yL~~r~~~~--~~-------- 245 (419)
T TIGR02083 176 LILHIIGIIGVDGALYKSMEFSGEGLKELSMDDRFTIANMAIEAGAKTGIFPVDEITIEYEKGRGKRE--EK-------- 245 (419)
T ss_pred HHHHHHHHhCcCCccceEEEEECCccccCCHHHHhhhhhcccccCceeeEecCChHHHHHHhhCCccc--hh--------
Confidence 99999999999999999999999999999999999999999999999999999999999999765332 11
Q ss_pred hhhcccCCCCCCCCcccEEEEEECCCcccceecCCCCCCccccCccchhhhhhhcccccCCCCCCCccccccceeeecCC
Q 003797 241 NKMFVDYNEPQQERVYSSYLELNLADVEPCISGPKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHG 320 (795)
Q Consensus 241 ~~l~~~~~~~D~~a~Y~~vieiDLs~leP~vA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g 320 (795)
.+ .+|++|.|+++++||||+|||+||+|++|+|++||+|++..
T Consensus 246 --~~----~~D~dA~Y~~~~~iDls~leP~va~P~~pdnv~~v~e~~~~------------------------------- 288 (419)
T TIGR02083 246 --IY----KADEDAKYVRVIEIDLSELEPQVAFPHLPENTKDISEAGKE------------------------------- 288 (419)
T ss_pred --cc----cCCCCCCEEEEEEEEccccceeecCCCCcccCcChhhcccc-------------------------------
Confidence 22 48999999999999999999999999999999999998610
Q ss_pred CcccccCccEEEEEeecCCCCCChHHHHHHHHHHHHHHhCCCccCCceeEEEecCCHHHHHHHHHcChHHHHHhcCcEEe
Q 003797 321 QPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIV 400 (795)
Q Consensus 321 ~~~~l~~g~V~~a~IGSCTN~~~~dl~~aA~lLa~~A~~~G~kv~~~V~~~v~PgS~~V~~~l~~~Gl~~~l~~aGa~i~ 400 (795)
.-+|++||||||||||++||++||++| ||+||+++||++|+|||++|+++|+++|++++|.++||.|.
T Consensus 289 ------g~~id~v~IGSCTngr~eDl~~AA~iL------kG~kv~~~vr~~v~P~S~~v~~~a~~~G~~~~l~~aGa~i~ 356 (419)
T TIGR02083 289 ------EIKIDQVVIGSCTNGRLEDLRLAAEIL------KGKTVAPDVRCIIIPGSQNVYLEAMKEGLLEIFIEAGAVVS 356 (419)
T ss_pred ------cCccCeEEEEcCCCCChHHHHHHHHHH------cCCCCCCCccEEEeCCCHHHHHHHHHCCcHHHHHHcCCEEc
Confidence 113779999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred ccCCccccCCCCCCChhhhccccCCceeEEEEeccCCCCCCCCCCccCCccccCHHHHHHHHHhCccc
Q 003797 401 GYGCTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVD 468 (795)
Q Consensus 401 ~~gCg~CiG~~g~l~~~~~~~i~~~~~~~~~vss~NRNF~GR~g~~~~~~yLaSP~~vaA~AlaG~I~ 468 (795)
+||||+|+|++....+ +|++ +|||+||||+||||+..+.+|||||++||||||+|+|+
T Consensus 357 ~pgCg~C~G~~~g~l~-------~ge~---~vsT~NRNF~GRmG~~~~~~yLaSP~~vAAsAi~G~it 414 (419)
T TIGR02083 357 TPTCGPCLGGHMGILA-------EGER---AISTTNRNFVGRMGHPKSEVYLASPAVAAASAIKGYIA 414 (419)
T ss_pred CCccccccCcCCCcCC-------CCCE---EEEecCCCCCccCCCCCCeEEECCHHHHHHHHhCCCcC
Confidence 9999999998744332 3454 68999999999999777889999999999999999996
No 28
>cd01582 Homoaconitase Homoaconitase and other uncharacterized proteins of the Aconitase family. Homoaconitase catalytic domain. Homoaconitase and other uncharacterized proteins of the Aconitase family. Homoaconitase is part of an unusual lysine biosynthesis pathway found only in filamentous fungi, in which lysine is synthesized via the alpha-aminoadipate pathway. In this pathway, homoaconitase catalyzes the conversion of cis-homoaconitic acid into homoisocitric acid. The reaction mechanism is believed to be similar to that of other aconitases.
Probab=100.00 E-value=1.5e-103 Score=854.01 Aligned_cols=347 Identities=32% Similarity=0.510 Sum_probs=311.8
Q ss_pred HHhcCCCCCccCCCCceEEEecccccCCCCCchhHHHHHHHHHHHHhhhhhhhhhhhccccCcceeeCCCCceeccchhc
Q 003797 5 MNKLGSDSNKINPLVPVDLVIDHSVQVDVTRSENAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLE 84 (795)
Q Consensus 5 ~~~~g~~~~~~~P~~pv~lviDH~v~~~~~~~~~a~~~n~~~e~~rn~e~~~fl~~~~~~f~~~~~~~pg~GI~Hqv~~E 84 (795)
+.++|. +++++|.+ +.+++||++|+.... .+..++.+++|+|. | +|+|+++|+|||||+++|
T Consensus 15 ~~~~g~-~~v~~p~~-~~~~~DH~vp~~~~~--~~~~~~~lr~~ak~-------------~-gi~~~~~g~GI~Hqv~~E 76 (363)
T cd01582 15 FMSIGA-TKIHNPDQ-IVMTLDHDVQNKSEK--NLKKYKNIESFAKK-------------H-GIDFYPAGRGIGHQIMIE 76 (363)
T ss_pred HHHcCC-CccCCCCC-EEEEcCCCCCCCCHH--HHHHHHHHHHHHHH-------------h-CCeEECCCCCEEEEeccc
Confidence 557776 58999999 999999999998653 34456666666663 3 578899999999999999
Q ss_pred cccceeccCCCcccCC-eEEecCCCcCCcCccccccccccHHHHHHHHccCceeecCCceEEEEEecccCCCcchhhHHH
Q 003797 85 YLGRVVFNTNGMLYPD-SVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGVTATDLVL 163 (795)
Q Consensus 85 ~~a~~v~~~~G~~~P~-~vvGtDSHT~~~GalG~la~GvGg~e~~~~m~g~~~~~~vPevv~V~l~G~l~~gVtakDviL 163 (795)
+|+++|+ ++|||||||||+||||+||||||++|++.+|+++++|+++||+|+|+|+|+|++||++|||||
T Consensus 77 ---------~g~~~PG~~ivg~DSHT~t~GalGa~a~GvG~td~~~~~~tG~~w~~vPe~i~v~l~G~l~~gV~aKDviL 147 (363)
T cd01582 77 ---------EGYAFPGTLAVASDSHSNMYGGVGCLGTPIVRTDAAAIWATGQTWWQIPPVAKVELKGQLPKGVTGKDVIV 147 (363)
T ss_pred ---------cCccCCCeEEEecCCCccccccchheEeccCHHHHHHHHHhCCeeecCCCEEEEEEecccCCCCCHHHHHH
Confidence 8999996 579999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCccceEEEEecCCCCCCChhhhhhhhccccccCCceeeecCCHHHHHHHhhcCCChhHHHHHHHHHHHhhh
Q 003797 164 TVTQMLRKHGVVGKFVEFHGDGMGELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVAMVEGYLRANKM 243 (795)
Q Consensus 164 ~i~~~l~~~G~~g~~vEf~G~gv~~Ls~~~R~TI~NMa~E~GA~~~~fp~D~~t~~YL~~~gr~~~~~~~~~~y~~~~~l 243 (795)
+|+++|+.+|++||+|||+|||+++||+++|||||||++|+||+++|||+|
T Consensus 148 ~li~~l~~~g~~~~~vEf~G~~i~~Ls~~~R~Ti~NMa~E~GA~~~i~~~D----------------------------- 198 (363)
T cd01582 148 ALCGLFNKDQVLNHAIEFTGSGLNSLSVDTRLTIANMTTEWGALSGLFPTD----------------------------- 198 (363)
T ss_pred HHHHHhCcCCceeEEEEEECCccccCCHHHHhhHHhcccccCcceeEeccC-----------------------------
Confidence 999999999999999999999999999999999999999999999999998
Q ss_pred cccCCCCCCCCcccEEEEEECCCcccceecCCCCCCccccCccchhhhhhhcccccCCCCCCCccccccceeeecCCCcc
Q 003797 244 FVDYNEPQQERVYSSYLELNLADVEPCISGPKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHGQPA 323 (795)
Q Consensus 244 ~~~~~~~D~~a~Y~~vieiDLs~leP~vA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~ 323 (795)
+++++||||+|||+||+|++|+|++|+++++.. +
T Consensus 199 -------------~~~~~iDls~leP~va~P~~p~~~~~~~~~~~~------------~--------------------- 232 (363)
T cd01582 199 -------------AKHLILDLSTLSPYVSGPNSVKVSTPLKELEAQ------------N--------------------- 232 (363)
T ss_pred -------------ceEEEEEcccceeeeeCCCCCCCcCCHHHhhhc------------C---------------------
Confidence 456999999999999999999999999997420 0
Q ss_pred cccCccEEEEEeecCCCCCChHHHHHHHHHHHHHHhCC-CccCCceeEEEecCCHHHHHHHHHcChHHHHHhcCcEEecc
Q 003797 324 ELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELG-LQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGY 402 (795)
Q Consensus 324 ~l~~g~V~~a~IGSCTN~~~~dl~~aA~lLa~~A~~~G-~kv~~~V~~~v~PgS~~V~~~l~~~Gl~~~l~~aGa~i~~~ 402 (795)
-+|++||||||||||++||+.||++|+++..++| ++|+||||++|+|||++|+++|+++||+++|.++||.|.+|
T Consensus 233 ----~~id~~~IGSCTngr~~Dl~~aA~il~gk~~~~~~~~v~~~Vr~~v~PgS~~V~~~a~~~Gl~~~l~~aGa~i~~p 308 (363)
T cd01582 233 ----IKINKAYLVSCTNSRASDIAAAADVVKGKKEKNGKIPVAPGVEFYVAAASSEVQAAAEKNGDWQTLLEAGATPLPA 308 (363)
T ss_pred ----ceEeEEEEEcCCCCChHHHHHHHHHHhCccccccCcccCCCceEEEeCCCHHHHHHHHHcCcHHHHHHCCCEEECC
Confidence 1377999999999999999999999932222222 23999999999999999999999999999999999999999
Q ss_pred CCccccCCCCCCChhhhccccCCceeEEEEeccCCCCCCCCCCccCCccccCHHHHHHHHHhCcc
Q 003797 403 GCTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTV 467 (795)
Q Consensus 403 gCg~CiG~~g~l~~~~~~~i~~~~~~~~~vss~NRNF~GR~g~~~~~~yLaSP~~vaA~AlaG~I 467 (795)
||++|+|+++++.++ +|+ +|||+||||+||||+..+.+|||||++||||||+|+|
T Consensus 309 gCg~C~G~~~~~~~~-------ge~---~vsT~NRNF~GR~G~~~~~~yLaSP~~vaAsAi~G~i 363 (363)
T cd01582 309 GCGPCIGLGQGLLEP-------GEV---GISATNRNFKGRMGSTEALAYLASPAVVAASAISGKI 363 (363)
T ss_pred CCeeccCCCCCCCCC-------CCE---EEEecCCCCCcCCCCCCCcEEECCHHHHHHHHhCccC
Confidence 999999999776543 565 5899999999999998889999999999999999986
No 29
>cd01581 AcnB Aconitate hydratase B catalyses the formation of cis-aconitate from citrate as part of the TCA cycle. Aconitase B catalytic domain. Aconitate hydratase B catalyses the formation of cis-aconitate from citrate as part of the TCA cycle. Aconitase has an active (4FE-4S) and an inactive (3FE-4S) form. The active cluster is part of the catalytic site that interconverts citrate, cis-aconitase and isocitrate. The domain architecture of aconitase B is different from other aconitases in that the catalytic domain is normally found at C-terminus for other aconitases, but it is at N-terminus for B family. It also has a HEAT domain before domain 4 which plays a role in protein-protein interaction. This alignment is the core domain including domains 1,2 and 3.
Probab=100.00 E-value=6e-101 Score=850.44 Aligned_cols=367 Identities=24% Similarity=0.381 Sum_probs=324.8
Q ss_pred HHHHhcCCCCCccCCCCceEEEecccccCCCCCchhHHHHHHHHHHHHhhhhhhhhhhhccccCcceeeCCCCceeccch
Q 003797 3 DAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTRSENAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGSGIVHQVN 82 (795)
Q Consensus 3 ~~~~~~g~~~~~~~P~~pv~lviDH~v~~~~~~~~~a~~~n~~~e~~rn~e~~~fl~~~~~~f~~~~~~~pg~GI~Hqv~ 82 (795)
+.|+++|. ++|+|.+ +.+++||++|+.+.. .+..++.+++|.+++ ++.|+++|+|||||++
T Consensus 40 ~~f~~~~~--~v~d~~~-~v~~~DH~~p~~~~~--~a~~~~~~r~fa~~~--------------gi~~~~~g~GI~Hqv~ 100 (436)
T cd01581 40 DELKELAC--LGFSADL-VMQSFCHTAAYPKPV--DVKTHRTLPDFISNR--------------GGVALRPGDGVIHSWL 100 (436)
T ss_pred HHHHHcCC--cccCCcc-EEEEcCCCCCCCCHH--HHHHHHHHHHHHHHc--------------CCcEECCCCCeeeeee
Confidence 56788865 7899999 999999999997653 555788899999852 3567899999999998
Q ss_pred hccccceeccCCCcccCC-eEEecCCCcCCcCccccccccccHHHHHHHHccCceeecCCceEEEEEecccCCCcchhhH
Q 003797 83 LEYLGRVVFNTNGMLYPD-SVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGVTATDL 161 (795)
Q Consensus 83 ~E~~a~~v~~~~G~~~P~-~vvGtDSHT~~~GalG~la~GvGg~e~~~~m~g~~~~~~vPevv~V~l~G~l~~gVtakDv 161 (795)
.| +++|+ ++|||||||||+|| ||||+|++|++.+|++|++||++||+|+|+|+|+|++||++|||
T Consensus 101 ~e-----------~~~PG~~ivGtDSHT~t~ga---~a~GvG~td~a~~latG~~w~~vPeti~V~l~G~l~~gV~aKDv 166 (436)
T cd01581 101 NR-----------MLLPDTVGTGGDSHTRFPIG---ISFPAGSGLVAFAAATGVMPLDMPESVLVRFKGKMQPGITLRDL 166 (436)
T ss_pred hh-----------hccCCceEEeeccccCCCCc---eEEeecHHHHHHHHHhCeeeeeCCCEEEEEEecccCCCcChhHH
Confidence 87 35775 57999999999987 79999999999999999999999999999999999999999999
Q ss_pred HHHHH----HH--------HHhcCccceEEEEecCCCCCCChhhhhhhhccccccCCceeeecCCHHH-HHHHhhc----
Q 003797 162 VLTVT----QM--------LRKHGVVGKFVEFHGDGMGELSLADRATIANMSPEYGATMGFFPVDHVT-LQYLKLT---- 224 (795)
Q Consensus 162 iL~i~----~~--------l~~~G~~g~~vEf~G~gv~~Ls~~~R~TI~NMa~E~GA~~~~fp~D~~t-~~YL~~~---- 224 (795)
||+|+ ++ ++.+|++||+|||. |+++||+++|||||||++|+|||+||||+|++| ++||+.+
T Consensus 167 iL~i~~~li~~g~l~v~~~~g~~g~~g~~iEf~--Gv~~Ls~~~R~Ti~NMa~E~GA~~gif~~De~t~~~yL~~~~~~~ 244 (436)
T cd01581 167 VNAIPYYAIQQGLLTVEKKGKKNVFNGRILEIE--GLPDLKVEQAFELTDASAERSAAACTVRLDKEPVIEYLESNVVLM 244 (436)
T ss_pred HHHHHHHHHhcccccccccCCcccccceEEEEC--CcccCCHhHHHHHHhhhhhhCceEEEecCCHhHHHHHHHhCcccc
Confidence 99864 44 44445699999995 599999999999999999999999999999988 8999996
Q ss_pred ------CCCh-----hHHHHHHHHHHHhhhcccCCCCCCCCcccEEEEEECCCc-ccceecCCCCCCccccCccchhhhh
Q 003797 225 ------GRSD-----ETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADV-EPCISGPKRPHDRVPLKEMKADWHS 292 (795)
Q Consensus 225 ------gr~~-----~~~~~~~~y~~~~~l~~~~~~~D~~a~Y~~vieiDLs~l-eP~vA~P~~P~~~~~v~e~~~~~~~ 292 (795)
||.+ .+.++++.|.+.+.+| .+|++|.|+++++||||+| ||+||+|++|+|++|++|+..
T Consensus 245 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~----~~D~da~Y~~~ieiDls~l~eP~VA~P~~pdn~~~v~e~~g---- 316 (436)
T cd01581 245 KIMIANGYDDARTLLRRIIAMEEWLANPPLL----EPDADAEYAAVIEIDLDDIKEPILACPNDPDDVKLLSEVAG---- 316 (436)
T ss_pred ccccccCcccccchhHHHHHHHHHHhhcccc----cCCCCCceEEEEEEEhHhCCCCeecCCCChhhceEhHHhcC----
Confidence 5532 3345677888877777 4799999999999999999 999999999999999999862
Q ss_pred hhcccccCCCCCCCccccccceeeecCCCcccccCccEEEEEeecCCCCCChHHHHHHHHHHHHHHhCCCccCCceeEEE
Q 003797 293 CLDNKVGFKGFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSL 372 (795)
Q Consensus 293 ~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IGSCTN~~~~dl~~aA~lLa~~A~~~G~kv~~~V~~~v 372 (795)
. +|+++||||||| |++||+.||.+| ||+|+ +.||++|
T Consensus 317 ----------~-------------------------~id~~~IGSCTn-r~eDl~~AA~il------kg~~~-~~vr~~v 353 (436)
T cd01581 317 ----------K-------------------------KIDEVFIGSCMT-NIGHFRAAAKIL------RGKEF-KPTRLWV 353 (436)
T ss_pred ----------C-------------------------ccceEEEecCCC-CHHHHHHHHHHH------cCCCC-CCCCEEE
Confidence 1 267899999999 999999999999 99996 4599999
Q ss_pred ecCCHHHHHHHHHcChHHHHHhcCcEEeccCCccccCCCCCCChhhhccccCCceeEEEEeccCCCCCCCCCCccCCccc
Q 003797 373 APGSGVVTKYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRANYL 452 (795)
Q Consensus 373 ~PgS~~V~~~l~~~Gl~~~l~~aGa~i~~~gCg~CiG~~g~l~~~~~~~i~~~~~~~~~vss~NRNF~GR~g~~~~~~yL 452 (795)
+|||++|+++|+++|++++|+++||.|.+||||+|+|+.+.+ .+|++ +|||+||||+||||+ .+.+||
T Consensus 354 ~P~S~~V~~~~~~~G~~~~l~~aGa~v~~pgCg~C~G~~~~~--------~~gev---~vsT~NRNF~GRmG~-~~~~yL 421 (436)
T cd01581 354 APPTRMDWAILQEEGYYSIFGDAGARTEMPGCSLCMGNQARV--------ADGAT---VFSTSTRNFDNRVGK-GAEVYL 421 (436)
T ss_pred ECCCHHHHHHHHHcChHHHHHHcCCEECCCccccccCcCCcC--------CCCCE---EEEecCCCCCCCCCC-CCcEEE
Confidence 999999999999999999999999999999999999985443 35665 689999999999999 668999
Q ss_pred cCHHHHHHHHHhCcc
Q 003797 453 ASPPLVVAYALAGTV 467 (795)
Q Consensus 453 aSP~~vaA~AlaG~I 467 (795)
|||++||||||+|+|
T Consensus 422 aSP~~vAAsAi~G~i 436 (436)
T cd01581 422 GSAELAAVCALLGRI 436 (436)
T ss_pred CCHHHHHHHHhCccC
Confidence 999999999999987
No 30
>cd01351 Aconitase Aconitase catalytic domain; Aconitase catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Aconitase catalytic domain. Aconitase (aconitate hydratase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediate product during the course of the reaction. In eukaryotes two isozymes of aconitase are known to exist: one found in the mitochondrial matrix and the other found in the cytoplasm. Aconitase, in its active form, contains a 4Fe-4S iron-sulfur cluster; three cysteine residues have been shown to be ligands of the 4Fe-4S cluster. This is the Aconitase core domain, including structural domains 1, 2 and 3, which binds the Fe-S cluster. The aconitase family also contains the following proteins: - Iron-responsive element binding protein (IRE-BP), a cytosolic protein that binds to iron-responsive elements (IREs). IREs are stem-loop structures found in the 5'
Probab=100.00 E-value=7.7e-98 Score=824.33 Aligned_cols=375 Identities=38% Similarity=0.604 Sum_probs=339.6
Q ss_pred HHHHhcCCCCCccCCCCceEEEecccccCCCCCchhHHHHHHHHHHHHhhhhhhhhhhhccccCcceeeCCCCceeccch
Q 003797 3 DAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTRSENAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGSGIVHQVN 82 (795)
Q Consensus 3 ~~~~~~g~~~~~~~P~~pv~lviDH~v~~~~~~~~~a~~~n~~~e~~rn~e~~~fl~~~~~~f~~~~~~~pg~GI~Hqv~ 82 (795)
+.|+++|.+.++++|.. +.+++||++|++.. +|.++|+|++|.+++|+ ++|+++|+|||||++
T Consensus 14 ~~~~~~~~~~~v~~p~~-v~~~~DH~~p~~~~---------------~~~~~~~~lr~f~~~~g-i~~~~~g~Gi~H~~~ 76 (389)
T cd01351 14 KAFEILAALGKVADPSQ-IACVHDHAVQLEKP---------------VNNEGHKFLSFFAALQG-IAFYRPGVGIIHQIM 76 (389)
T ss_pred HHHHHcCCCCCCCCccc-EEEEECCCCCCCCh---------------hHHHHHHHHHHHHHHcC-CcEECCCCCeECccc
Confidence 46778887446788877 99999999999532 45566777777777775 889999999999999
Q ss_pred hccccceeccCCCcccC-CeEEecCCCcCCcCccccccccccHHHHHHHHccCceeecCCceEEEEEecccCCCcchhhH
Q 003797 83 LEYLGRVVFNTNGMLYP-DSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGVTATDL 161 (795)
Q Consensus 83 ~E~~a~~v~~~~G~~~P-~~vvGtDSHT~~~GalG~la~GvGg~e~~~~m~g~~~~~~vPevv~V~l~G~l~~gVtakDv 161 (795)
+|++ ..| ++++|+||||||+||||++|||+|++|++++|+||++|+++|++++|+|+|+|++||++||+
T Consensus 77 ~E~~----------~~pG~~i~g~DSHT~t~Ga~ga~a~G~G~td~~~~~~tg~~~~~vP~~~~v~l~G~l~~~V~~kDl 146 (389)
T cd01351 77 VENL----------ALPGDLLVGSDSHTTSYGGLGAISTGAGGGDVAFVMAGGPAWLKKPEVVGVNLTGKLSPGVTGKDV 146 (389)
T ss_pred cccc----------CCCCCEEEEcCcCccccCcchheEEeeeHHHHHHHHhcCceeccCCcEEEEEEecccCCCceeeHH
Confidence 9943 455 68999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCccceEEEEecCCCCCCChhhhhhhhccccccCCceeeecCCHHHHHHHhhcCCChhHHHHHHHHHHHh
Q 003797 162 VLTVTQMLRKHGVVGKFVEFHGDGMGELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVAMVEGYLRAN 241 (795)
Q Consensus 162 iL~i~~~l~~~G~~g~~vEf~G~gv~~Ls~~~R~TI~NMa~E~GA~~~~fp~D~~t~~YL~~~gr~~~~~~~~~~y~~~~ 241 (795)
+|+|++.|+.+|++|+++||+|+|+++||+++|+|||||++|+||++|+||+|++|++||+.++|.+... .+++|.+
T Consensus 147 ~l~ilg~lg~~g~~~~~~Ef~G~~~~~ls~d~r~tl~nm~~E~ga~~gi~p~D~~t~~yl~~~~~~~~~~-~~~~~~~-- 223 (389)
T cd01351 147 VLKLGGIVGVDGVLNRIVEFYGEGVSSLSIEDRLTICNMMAELGATTGIFPEDKTTLKWLEATGRPLLKN-LWLAFPE-- 223 (389)
T ss_pred HHHHHHHHhhcccCceEEEEECCccCCCCHHHHHHHHHHhHhhhheEeEeCCcHHHHHHHHhcCCchhhH-HHHHHHh--
Confidence 9999999999999999999999999999999999999999999999999999999999999999887543 3333333
Q ss_pred hhcccCCCCCCCCcccEEEEEECCCcccceecCCCCCCccccCccchhhhhhhcccccCCCCCCCccccccceeeecCCC
Q 003797 242 KMFVDYNEPQQERVYSSYLELNLADVEPCISGPKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHGQ 321 (795)
Q Consensus 242 ~l~~~~~~~D~~a~Y~~vieiDLs~leP~vA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~ 321 (795)
.+ .+|++|.|+++++||||+|+|+|++|++|+|++|++++..
T Consensus 224 -~l----~~d~~a~y~~~i~iDls~lep~va~p~~p~~~~~v~~~~~--------------------------------- 265 (389)
T cd01351 224 -EL----LADEGAEYDQVIEIDLSELEPDISGPNRPDDAVSVSEVEG--------------------------------- 265 (389)
T ss_pred -cc----CCCCCCCeeEEEEEEhhhceeEEecCCChhhccChhhccC---------------------------------
Confidence 22 5899999999999999999999999999999999999752
Q ss_pred cccccCccEEEEEeecCCCCCChHHHHHHHHHHHHHHhCCCccCCceeEEEecCCHHHHHHHHHcChHHHHHhcCcEEec
Q 003797 322 PAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVG 401 (795)
Q Consensus 322 ~~~l~~g~V~~a~IGSCTN~~~~dl~~aA~lLa~~A~~~G~kv~~~V~~~v~PgS~~V~~~l~~~Gl~~~l~~aGa~i~~ 401 (795)
.+|+++|||||||+|++||+.||++| ||+||+++|+++|+|||++|+++|+++|++++|+++||.|..
T Consensus 266 ------~~Id~v~IGSCtn~~~~dl~~aA~il------kgk~v~~~v~~~v~P~S~~v~~~a~~~Gl~~~l~~aG~~i~~ 333 (389)
T cd01351 266 ------TKIDQVLIGSCTNNRYSDMLAAAKLL------KGAKVAPGVRLIVTPGSRMVYATLSREGYYEILVDSGARILP 333 (389)
T ss_pred ------CceeEEEEecCCCCCHHHHHHHHHHH------cCCcCCCCceEEEECCCHHHHHHHHHcChHHHHHHCCCEEeC
Confidence 14789999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred cCCccccCCCCCCChhhhccccCCceeEEEEeccCCCCCCCCCCccCCccccCHHHHHHHHHhCcc
Q 003797 402 YGCTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTV 467 (795)
Q Consensus 402 ~gCg~CiG~~g~l~~~~~~~i~~~~~~~~~vss~NRNF~GR~g~~~~~~yLaSP~~vaA~AlaG~I 467 (795)
+||++|+|+++++..+ |++ +|||+||||+||||+..+++|||||++||||||+|+|
T Consensus 334 ~gC~~C~G~~~~~~~~-------g~~---~vst~nRNF~GR~g~~~~~~yLaSP~~vaAsAl~G~i 389 (389)
T cd01351 334 PGCGPCMGNGARLVAD-------GEV---GVSSGNRNFPGRLGTYERHVYLASPELAAATAIAGKI 389 (389)
T ss_pred CCCcccCCCCCCcCCC-------CcE---EEEeecCCCccccCCCCCceEECCHHHHHHHHhcCcC
Confidence 9999999999776543 554 6899999999999998889999999999999999986
No 31
>PRK09238 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; Validated
Probab=100.00 E-value=2.5e-93 Score=829.27 Aligned_cols=370 Identities=24% Similarity=0.374 Sum_probs=331.7
Q ss_pred hHHHHhcCCCCCccCCCCceEEEecccccCCCCCchhHHHHHHHHHHHHhhhhhhhhhhhccccCcceeeCCCCceeccc
Q 003797 2 RDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTRSENAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGSGIVHQV 81 (795)
Q Consensus 2 r~~~~~~g~~~~~~~P~~pv~lviDH~v~~~~~~~~~a~~~n~~~e~~rn~e~~~fl~~~~~~f~~~~~~~pg~GI~Hqv 81 (795)
|+.|+++|. ++++|.. +.+++||.+|.... .++..|+.+++|.++++ +.+++||+|||||+
T Consensus 411 ~~~~~~lg~--~~~~~d~-v~~~~dH~~p~~~~--~~a~~~~~lr~Fa~~~G--------------i~~~~pG~GI~H~v 471 (835)
T PRK09238 411 RDELKDLAC--LGFSADL-VMQSFCHTAAYPKP--VDVKTHHTLPDFIMNRG--------------GVSLRPGDGVIHSW 471 (835)
T ss_pred HHHHHHcCC--cccCCCc-EEEEccCCCCCCCH--HHHHHHHHHHHHHHHcC--------------CcEeCCCCCeeeec
Confidence 688999998 7899999 99999999999755 46668899999998633 34578999999999
Q ss_pred hhccccceeccCCCcccCCe-EEecCCCcCCcCccccccccccHHHHHHHHccCceeecCCceEEEEEecccCCCcchhh
Q 003797 82 NLEYLGRVVFNTNGMLYPDS-VVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGVTATD 160 (795)
Q Consensus 82 ~~E~~a~~v~~~~G~~~P~~-vvGtDSHT~~~GalG~la~GvGg~e~~~~m~g~~~~~~vPevv~V~l~G~l~~gVtakD 160 (795)
+ +++++|++ ++||||||||+|| ||||+|++|++.+|++|++||+|||+|+|+|+|+|++|||+||
T Consensus 472 l-----------~~~~~Pg~vivG~DSHT~t~ga---~a~G~Gs~~vA~a~atG~~~l~vPesv~V~l~G~L~~gVtaKD 537 (835)
T PRK09238 472 L-----------NRMLLPDTVGTGGDSHTRFPIG---ISFPAGSGLVAFAAATGVMPLDMPESVLVRFKGEMQPGITLRD 537 (835)
T ss_pred c-----------cccccCCeEEEecccccCCCCc---eEeccchHHHHHHHhhCceEEeCCCEEEEEEecccCCCcCHhH
Confidence 6 35889975 6999999999998 6899999999999999999999999999999999999999999
Q ss_pred HHHHH----HHH--------HHhcCccceEEEEecCCCCCCChhhhhhhhccccccCCceeeec-CCHHHHHHHhhc---
Q 003797 161 LVLTV----TQM--------LRKHGVVGKFVEFHGDGMGELSLADRATIANMSPEYGATMGFFP-VDHVTLQYLKLT--- 224 (795)
Q Consensus 161 viL~i----~~~--------l~~~G~~g~~vEf~G~gv~~Ls~~~R~TI~NMa~E~GA~~~~fp-~D~~t~~YL~~~--- 224 (795)
|||+| +++ ++.+|++||+|||. |+++||+++|||||||++|+||++|+|| +|++|++||+.+
T Consensus 538 viL~I~~~~i~~g~ltv~~~~g~~~~~gr~lEf~--Gv~~Lsve~R~Tl~NMa~E~GA~~~i~~~~de~t~eYL~~~~~~ 615 (835)
T PRK09238 538 LVHAIPYYAIKQGLLTVEKKGKKNIFSGRILEIE--GLPDLKVEQAFELTDASAERSAAGCTIKLSKEPIIEYLRSNIVL 615 (835)
T ss_pred HHHHHHHHHHhcccccccccCCccceeeeEEEEc--CcccCCHHHHHhHhhccHhhCceeceecCChHHHHHHHHhcccc
Confidence 99999 442 33445789999994 6999999999999999999999999999 789999999986
Q ss_pred -------CCC-----hhHHHHHHHHHHHhhhcccCCCCCCCCcccEEEEEECCCc-ccceecCCCCCCccccCccchhhh
Q 003797 225 -------GRS-----DETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADV-EPCISGPKRPHDRVPLKEMKADWH 291 (795)
Q Consensus 225 -------gr~-----~~~~~~~~~y~~~~~l~~~~~~~D~~a~Y~~vieiDLs~l-eP~vA~P~~P~~~~~v~e~~~~~~ 291 (795)
||. ...++.+++|++.+.+| .+|++|.|+++|+||||+| ||+||+|++|||++||+|+.+.
T Consensus 616 ~~~mi~~g~~~~~~~~~r~~~~~~w~~~~~ll----~aD~dA~Y~~vieIDLs~i~eP~VA~P~~Pdnv~~lsev~g~-- 689 (835)
T PRK09238 616 LKWMIAEGYGDARTLERRIAAMEEWLANPELL----EADADAEYAAVIEIDLAEIKEPILACPNDPDDVRLLSEVAGT-- 689 (835)
T ss_pred cccccccCcccccchhHHHHHHHHHHhhcccc----cCCCCCceEEEEEEEhhhcCCCeecCCCChhhheEHHHhcCC--
Confidence 664 23467788999888888 5899999999999999999 9999999999999999998631
Q ss_pred hhhcccccCCCCCCCccccccceeeecCCCcccccCccEEEEEeecCCCCCChHHHHHHHHHHHHHHhCCCccCCceeEE
Q 003797 292 SCLDNKVGFKGFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTS 371 (795)
Q Consensus 292 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IGSCTN~~~~dl~~aA~lLa~~A~~~G~kv~~~V~~~ 371 (795)
.|+++|||||| |+++|++.||.+| ||+++++.||++
T Consensus 690 -------------------------------------~Id~vfIGSCT-gr~~DlraAA~IL------kg~~v~~~vr~~ 725 (835)
T PRK09238 690 -------------------------------------KIDEVFIGSCM-TNIGHFRAAGKLL------EGKKGQLPTRLW 725 (835)
T ss_pred -------------------------------------ccCeEEEEcCC-CCHHHHHHHHHHH------cCCccCCCCCEE
Confidence 26689999999 9999999999999 999999999999
Q ss_pred EecCCHHHHHHHHHcChHHHHHhcCcEEeccCCccccCCCCCCChhhhccccCCceeEEEEeccCCCCCCCCCCccCCcc
Q 003797 372 LAPGSGVVTKYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRANY 451 (795)
Q Consensus 372 v~PgS~~V~~~l~~~Gl~~~l~~aGa~i~~~gCg~CiG~~g~l~~~~~~~i~~~~~~~~~vss~NRNF~GR~g~~~~~~y 451 (795)
|+|||++|+.+|+++|++++|.++||.|..||||+|+|+.+.+ .+|++ +|||+||||+||||+ .+.+|
T Consensus 726 V~P~S~~v~~~l~~eG~~~~l~~AGa~v~~pGCg~C~G~~~~~--------~~ge~---~vSTsNRNF~GRmG~-~a~vY 793 (835)
T PRK09238 726 VAPPTKMDADQLTEEGYYSIFGKAGARIEMPGCSLCMGNQARV--------ADGAT---VFSTSTRNFPNRLGK-GANVY 793 (835)
T ss_pred EECCCHHHHHHHHHcCcHHHHHHcCCEECCCcchhhhCccCcC--------CCCCE---EEeecCCCCCCCCCC-CCCeE
Confidence 9999999999999999999999999999999999999985543 35665 689999999999997 56799
Q ss_pred ccCHHHHHHHHHhCccc
Q 003797 452 LASPPLVVAYALAGTVD 468 (795)
Q Consensus 452 LaSP~~vaA~AlaG~I~ 468 (795)
|+||++||||||+|+|+
T Consensus 794 LaSP~~aAAsAi~G~I~ 810 (835)
T PRK09238 794 LGSAELAAVCALLGRIP 810 (835)
T ss_pred eCCHHHHHHHHhCCccC
Confidence 99999999999999994
No 32
>TIGR00117 acnB aconitate hydratase 2. Aconitate hydratase (aconitase) is an enzyme of the TCA cycle. This model describes aconitase 2, AcnB, which has weak similarity to aconitase 1. It is found almost exclusively in the Proteobacteria.
Probab=100.00 E-value=3.3e-92 Score=817.36 Aligned_cols=369 Identities=24% Similarity=0.382 Sum_probs=328.3
Q ss_pred hHHHHhcCCCCCccCCCCceEEEecccccCCCCCchhHHHHHHHHHHHHhhhhhhhhhhhccccCcceeeCCCCceeccc
Q 003797 2 RDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTRSENAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGSGIVHQV 81 (795)
Q Consensus 2 r~~~~~~g~~~~~~~P~~pv~lviDH~v~~~~~~~~~a~~~n~~~e~~rn~e~~~fl~~~~~~f~~~~~~~pg~GI~Hqv 81 (795)
|+.|+++|. ++|+|.+ +.+++||.+|.... .++..|+.+++|.+++. +.+++||+|||||+
T Consensus 412 ~~~~~~l~~--~vfdpd~-v~~~~DH~~p~~~~--~~a~~~~~lr~Fa~~~G--------------i~~~~pG~GI~Hqv 472 (844)
T TIGR00117 412 RDELKELAC--LGFSADL-VLQSFCHTAAYPKP--VDVNTHHTLPDFIMNRG--------------GVALRPGDGVIHSW 472 (844)
T ss_pred HHHHHHhCC--ceECCCc-EEEEeCCCCCCCCH--HHHHHHHHHHHHHHHcC--------------CeEECCCCceeccc
Confidence 688999976 7899999 99999999988754 46668999999998632 44688999999999
Q ss_pred hhccccceeccCCCcccCCe-EEecCCCcCCcCccccccccccHHHHHHHHccCceeecCCceEEEEEecccCCCcchhh
Q 003797 82 NLEYLGRVVFNTNGMLYPDS-VVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGVTATD 160 (795)
Q Consensus 82 ~~E~~a~~v~~~~G~~~P~~-vvGtDSHT~~~GalG~la~GvGg~e~~~~m~g~~~~~~vPevv~V~l~G~l~~gVtakD 160 (795)
+.| +++||+ ++||||||||+ +| ||+|+|++|++.+|++|++||+|||+|+|+|+|+|++|||+||
T Consensus 473 l~e-----------~~~PG~vivG~DSHT~t~--~G-~a~G~Gs~dvA~a~atG~~~l~vPesV~V~l~G~L~~gVtaKD 538 (844)
T TIGR00117 473 LNR-----------MLLPDTVGTGGDSHTRFP--LG-ISFPAGSGLVAFAAATGVMPLDMPESVLVRFKGEMQPGITLRD 538 (844)
T ss_pred chh-----------hccCCeeEEecccccccc--ce-EEecccHHHHHHHHHhCeeeEeCCCEEEEEEeccCCCCcChhh
Confidence 876 468864 69999999997 67 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH------h------cCccceEEEEecCCCCCCChhhhhhhhccccccCCceeeecCCHH-HHHHHhhc---
Q 003797 161 LVLTVTQMLR------K------HGVVGKFVEFHGDGMGELSLADRATIANMSPEYGATMGFFPVDHV-TLQYLKLT--- 224 (795)
Q Consensus 161 viL~i~~~l~------~------~G~~g~~vEf~G~gv~~Ls~~~R~TI~NMa~E~GA~~~~fp~D~~-t~~YL~~~--- 224 (795)
|||+|+..+. . +|++|++|||. |+++||+++|||||||++|+||++|+||+|++ |++||+.+
T Consensus 539 liL~I~~~~i~~G~ltv~k~g~~ng~~gk~lEf~--Gi~~Lsve~R~Ti~NMaaE~GA~~gii~~D~e~t~eYLk~~~~~ 616 (844)
T TIGR00117 539 LVNAIPLYAIKQGLLTVEKKGKKNVFNGRILEIE--GLPDLKVEQAFELTDASAERSAAGCTIKLNKEPIIEYLNSNIVL 616 (844)
T ss_pred HHHHHHHHHHhcCeeecccccccccccceEEEEC--CcccCCHhHHHHHhhhhhhhCceEEEeccChHHHHHHHHhCccc
Confidence 9999954333 2 45789999995 59999999999999999999999999999964 89999995
Q ss_pred -------CCCh-----hHHHHHHHHHHHhhhcccCCCCCCCCcccEEEEEECCCc-ccceecCCCCCCccccCccchhhh
Q 003797 225 -------GRSD-----ETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADV-EPCISGPKRPHDRVPLKEMKADWH 291 (795)
Q Consensus 225 -------gr~~-----~~~~~~~~y~~~~~l~~~~~~~D~~a~Y~~vieiDLs~l-eP~vA~P~~P~~~~~v~e~~~~~~ 291 (795)
||.+ .+++.+++|++.+.+| .+|++|.|+++|+||||+| ||+||+|++|||++||+|+.+.
T Consensus 617 ~~~mi~~G~~~~~~~~~~~~~~e~w~~~~~ll----~aD~dA~Y~~vieIDLs~i~EP~VA~P~~PDnv~pvsev~g~-- 690 (844)
T TIGR00117 617 LKWMIAEGYGDRRTLERRIQGMEKWLANPELL----EADADAEYAAVIEIDLAEIKEPILAAPNDPDDVRPLSEVQGD-- 690 (844)
T ss_pred cccccccCCcchhhhhHHHHHHHHHHhhcccc----cCCCCCceEEEEEEEhHhCCCCeeCCCCChhhccChHhhcCc--
Confidence 6653 3567788999888887 4899999999999999999 9999999999999999998631
Q ss_pred hhhcccccCCCCCCCccccccceeeecCCCcccccCccEEEEEeecCCCCCChHHHHHHHHHHHHHHhCCCccCCceeEE
Q 003797 292 SCLDNKVGFKGFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTS 371 (795)
Q Consensus 292 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IGSCTN~~~~dl~~aA~lLa~~A~~~G~kv~~~V~~~ 371 (795)
.|+++|||||| ++++|++.||.+| ||+++++ ||++
T Consensus 691 -------------------------------------~IdqVfIGSCT-~n~~DlraAA~IL------kg~~v~~-vrl~ 725 (844)
T TIGR00117 691 -------------------------------------KIDEVFIGSCM-TNIGHFRAAGKIL------DAAGQLP-TRLW 725 (844)
T ss_pred -------------------------------------ccceEEEEcCC-CCHHHHHHHHHHH------cCCCcCC-CCEE
Confidence 25689999999 7999999999999 9999988 9999
Q ss_pred EecCCHHHHHHHHHcChHHHHHhcCcEEeccCCccccCCCCCCChhhhccccCCceeEEEEeccCCCCCCCCCCccCCcc
Q 003797 372 LAPGSGVVTKYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRANY 451 (795)
Q Consensus 372 v~PgS~~V~~~l~~~Gl~~~l~~aGa~i~~~gCg~CiG~~g~l~~~~~~~i~~~~~~~~~vss~NRNF~GR~g~~~~~~y 451 (795)
|+|||++|+++|+++|++++|.++||+|..||||+|+|+.+.+. +|++ +|||+||||+||||+ .+.+|
T Consensus 726 V~P~S~~V~~~l~~eG~~~~f~~AGa~i~~pGCg~C~Gn~~~v~--------~Ge~---vvSTsNRNF~GRmG~-~a~vY 793 (844)
T TIGR00117 726 VAPPTRMDEQQLTEEGYYSIFGAAGARTEIPGCSLCMGNQARVA--------DGAT---VFSTSTRNFPNRMGT-GANVY 793 (844)
T ss_pred EECCCHHHHHHHHHcCcHHHHHHcCCEECCCccccccCCCCcCC--------CCCE---EEeccCCCCCCCCCC-CccEE
Confidence 99999999999999999999999999999999999999966543 3554 689999999999998 55799
Q ss_pred ccCHHHHHHHHHhCccc
Q 003797 452 LASPPLVVAYALAGTVD 468 (795)
Q Consensus 452 LaSP~~vaA~AlaG~I~ 468 (795)
||||++||||||+|+|+
T Consensus 794 LaSP~~aAAsAi~G~I~ 810 (844)
T TIGR00117 794 LGSAELAAVCALLGKIP 810 (844)
T ss_pred eCCHHHHHHHHhCcccC
Confidence 99999999999999994
No 33
>PLN00094 aconitate hydratase 2; Provisional
Probab=100.00 E-value=4.2e-90 Score=797.24 Aligned_cols=370 Identities=22% Similarity=0.360 Sum_probs=327.5
Q ss_pred hHHHHhcCCCCCccCCCCceEEEecccccCCCCCchhHHHHHHHHHHHHhhhhhhhhhhhccccCcceeeCCCCceeccc
Q 003797 2 RDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTRSENAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGSGIVHQV 81 (795)
Q Consensus 2 r~~~~~~g~~~~~~~P~~pv~lviDH~v~~~~~~~~~a~~~n~~~e~~rn~e~~~fl~~~~~~f~~~~~~~pg~GI~Hqv 81 (795)
|+.|+++|.. .++|.+ |.+++||.+|+... .++..++.+++|.+++ ++.+++||+|||||+
T Consensus 485 ~~efkel~~~--~~dpdk-v~~~fDH~ap~p~~--~~~~~~~~lr~Fa~~~--------------Gi~~~~~G~GI~Hqv 545 (938)
T PLN00094 485 RDELKDLACL--GFSADL-VMQSFCHTAAYPKP--VDVVTHHTLPDFIRNR--------------GGVSLRPGDGVIHSW 545 (938)
T ss_pred HHHHHHhccc--ccCccc-EEEEccCCCCCCCH--HHHHHHHHHHHHHHHc--------------CCEEECCCCceeccc
Confidence 6889998874 679988 99999999998755 4666788899988852 345788999999999
Q ss_pred hhccccceeccCCCcccCC-eEEecCCCcCCcCccccccccccHHHHHHHHccCceeecCCceEEEEEecccCCCcchhh
Q 003797 82 NLEYLGRVVFNTNGMLYPD-SVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGVTATD 160 (795)
Q Consensus 82 ~~E~~a~~v~~~~G~~~P~-~vvGtDSHT~~~GalG~la~GvGg~e~~~~m~g~~~~~~vPevv~V~l~G~l~~gVtakD 160 (795)
+.| +++|+ +++|+|||||+..|+ +||.|++|++.+|++|++||+|||+|+|+|+|+|++|||+||
T Consensus 546 L~e-----------~~lPG~vivGgDSHT~fa~GI---sf~aGsgdvA~a~ATG~~wlkvPEsV~V~l~G~L~~gVtaKD 611 (938)
T PLN00094 546 LNR-----------MLLPDTVGTGGDSHTRFPIGI---SFPAGSGLVAFGAATGVIPLDMPESVLVRFTGTMQPGITLRD 611 (938)
T ss_pred ccc-----------cccCCeEEEeecCCCCCcccc---cCCCcHHHHHHHHHhCeehhcCCCEEEEEEecccCCCcCHhH
Confidence 754 67885 689999999988776 668899999999999999999999999999999999999999
Q ss_pred HHHHHH------HHHHh------cCccceEEEEecCCCCCCChhhhhhhhccccccCCceeeecCC-HHHHHHHhh----
Q 003797 161 LVLTVT------QMLRK------HGVVGKFVEFHGDGMGELSLADRATIANMSPEYGATMGFFPVD-HVTLQYLKL---- 223 (795)
Q Consensus 161 viL~i~------~~l~~------~G~~g~~vEf~G~gv~~Ls~~~R~TI~NMa~E~GA~~~~fp~D-~~t~~YL~~---- 223 (795)
|||+|+ +.|+. .+++||+||| +||++||+++|||||||++|+||++|+||+| ++|++||+.
T Consensus 612 lIL~Ii~~~i~~G~Ltv~k~gk~~~f~GkilEf--~Gl~~Lsve~R~TL~NMaaE~GAk~gii~~Dde~t~eYL~~n~~~ 689 (938)
T PLN00094 612 LVHAIPYTAIQDGLLTVEKKGKKNVFSGRILEI--EGLPHLKCEQAFELSDASAERSAAGCTIKLDKEPIIEYLNSNVVM 689 (938)
T ss_pred HHHHHHHHhhhccccchhhcCccceEeeEEEEe--CCcccCCHhHHHHHHhHHHHhCccEEEECCChhHHHHHHhhcccc
Confidence 999997 44433 3468999999 7799999999999999999999999999999 578999986
Q ss_pred ------cCCC-----hhHHHHHHHHHHHhhhcccCCCCCCCCcccEEEEEECCCc-ccceecCCCCCCccccCccchhhh
Q 003797 224 ------TGRS-----DETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADV-EPCISGPKRPHDRVPLKEMKADWH 291 (795)
Q Consensus 224 ------~gr~-----~~~~~~~~~y~~~~~l~~~~~~~D~~a~Y~~vieiDLs~l-eP~vA~P~~P~~~~~v~e~~~~~~ 291 (795)
+|+. +..++.+++|++...+| .+|++|.|+++|+||||+| ||+||+|++|||++||+|+.+
T Consensus 690 ~~~mi~~g~~~~rt~~~ri~~~e~w~~~~~ll----~aD~dA~Y~~vieIDLs~I~EP~VA~P~~PDnv~~lsev~g--- 762 (938)
T PLN00094 690 LKWMIAEGYGDRRTLERRIARMQQWLADPELL----EADPDAEYAAVIEIDMDEIKEPILCAPNDPDDARLLSEVTG--- 762 (938)
T ss_pred hhhhhccCCCchhhHHHHHHHHHHHHhhcccc----cCCCCCceEEEEEEEhHHCCCCeEeCCCChhhceECchhcC---
Confidence 4533 34467889999888887 5899999999999999999 999999999999999999862
Q ss_pred hhhcccccCCCCCCCccccccceeeecCCCcccccCccEEEEEeecCCCCCChHHHHHHHHHHHHHHhCCCccCCceeEE
Q 003797 292 SCLDNKVGFKGFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTS 371 (795)
Q Consensus 292 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IGSCTN~~~~dl~~aA~lLa~~A~~~G~kv~~~V~~~ 371 (795)
-+|+++|||||| ++++|++.||.+| +|+|+++.||++
T Consensus 763 ------------------------------------~kIDqVFIGSCT-grieDlraAA~IL------kGrkv~~~Vrl~ 799 (938)
T PLN00094 763 ------------------------------------DKIDEVFIGSCM-TNIGHFRAAGKLL------NDNLSQLPTRLW 799 (938)
T ss_pred ------------------------------------CccCeEEEEeCC-CCHHHHHHHHHHH------cCCCCCCCCcEE
Confidence 126789999999 7999999999999 999999999999
Q ss_pred EecCCHHHHHHHHHcChHHHHHhcCcEEeccCCccccCCCCCCChhhhccccCCceeEEEEeccCCCCCCCCCCccCCcc
Q 003797 372 LAPGSGVVTKYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRANY 451 (795)
Q Consensus 372 v~PgS~~V~~~l~~~Gl~~~l~~aGa~i~~~gCg~CiG~~g~l~~~~~~~i~~~~~~~~~vss~NRNF~GR~g~~~~~~y 451 (795)
|+|||++|+.+|+++|++++|.++||+|..||||+|+|+++.+. +|++ +|||+||||+||||+ .+.+|
T Consensus 800 V~P~Sr~V~~ql~~eG~~~if~~AGA~i~~PGCg~CmG~~g~l~--------~Gev---~vSTSNRNF~GRmG~-~a~VY 867 (938)
T PLN00094 800 VAPPTKMDEAQLKAEGYYSTFGTVGARTEMPGCSLCMGNQARVA--------EKST---VVSTSTRNFPNRLGK-GANVY 867 (938)
T ss_pred EeCCCHHHHHHHHHcCcHHHHHhCCCEEcCCccccccCCCCcCC--------CCCe---EEeecCCCCCCCCCC-CccEE
Confidence 99999999999999999999999999999999999999966653 4554 689999999999998 56899
Q ss_pred ccCHHHHHHHHHhCccc
Q 003797 452 LASPPLVVAYALAGTVD 468 (795)
Q Consensus 452 LaSP~~vaA~AlaG~I~ 468 (795)
|+||++|||+||+|+|+
T Consensus 868 LaSP~~AAASAi~G~It 884 (938)
T PLN00094 868 LASAELAAVAAILGRLP 884 (938)
T ss_pred ecCHHHHHHHHhCCccC
Confidence 99999999999999994
No 34
>cd01580 AcnA_IRP_Swivel Aconitase A swivel domain. This is the major form of the TCA cycle enzyme aconitate hydratase, also known as aconitase and citrate hydro-lyase. It includes bacterial and archaeal aconitase A, and the eukaryotic cytosolic form of aconitase. This group also includes sequences that have been shown to act as an iron-responsive element (IRE) binding protein in animals and may have the same role in other eukaryotes. This is the aconitase-like swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism.
Probab=100.00 E-value=1.3e-64 Score=491.10 Aligned_cols=170 Identities=75% Similarity=1.143 Sum_probs=166.7
Q ss_pred ecCCCCCcCccccCCCCCCCChHhhHHHHcCCCcccccccccCCCChhhhccccccchhhhhhhcCCCCCCcccccCCCc
Q 003797 571 NFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGEVGPKTVHVPTGE 650 (795)
Q Consensus 571 ~~gd~itTD~I~PAG~i~~~s~a~~~L~~~g~~~~~~n~yg~rr~n~evm~rg~F~n~r~~n~~~~~~~g~~t~~~p~~~ 650 (795)
+|||+||||||||||+|+++||||+||.++|++++|||+||+||||||||+||||+|+|++|+|+++.+|++|+|+|+|+
T Consensus 1 ~lgD~iTTDHISPaG~I~~~s~ag~yL~~~gv~~~dfnsyg~rRgnhevm~RgtFan~r~~N~~~~~~~g~~t~~~p~g~ 80 (171)
T cd01580 1 LLGDSVTTDHISPAGSIAKDSPAGKYLAERGVKPRDFNSYGSRRGNDEVMMRGTFANIRLRNKLVPGTEGGTTHHPPTGE 80 (171)
T ss_pred CCCCCccccccCCCCCCCCCChHHHHHHHcCCChhhccccccccCCceEeecccccchhhhhcccCCCCCCcEEECCCCc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccchHHHHHHcCCCcEEEeCCccCCCCchhhhhhchhhcCeeEEEecchhHHhhhhhccCccccccccCccchhhcc
Q 003797 651 KLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKAGEDADSLG 730 (795)
Q Consensus 651 ~~~v~~~A~~y~~~~~~~iiVaG~NfG~GSSRE~Aa~a~~~lGv~aVIA~SFarI~~~Nlin~Gilpl~~~~~~~~~~l~ 730 (795)
.++|||+|++|+++++++|||||+|||||||||||||+++++||+||||+||+|||++||+|||||||+|++++++++|+
T Consensus 81 ~~~i~~aA~~Yk~~g~plIIvaG~nfG~GSSRE~Aa~~~~~lGi~aVIA~SFarI~~~Nli~~Gllpl~~~~~~~~~~l~ 160 (171)
T cd01580 81 VMSIYDAAMRYKEEGVPLVILAGKEYGSGSSRDWAAKGPFLLGVKAVIAESFERIHRSNLVGMGILPLQFPPGENADSLG 160 (171)
T ss_pred EeeHHHHHHHHHHcCCcEEEEccCcccCCCcHHHHHHHHHHhCCCEEEEccHHHHHHhhHhhcCcceEEeCCccCHHhhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEe
Q 003797 731 LTGHERFSID 740 (795)
Q Consensus 731 ~~~~~~~~id 740 (795)
+++.|.++|.
T Consensus 161 l~g~e~~~i~ 170 (171)
T cd01580 161 LTGEETYDII 170 (171)
T ss_pred CCCceeEEee
Confidence 9999988874
No 35
>COG1049 AcnB Aconitase B [Energy production and conversion]
Probab=100.00 E-value=3.3e-47 Score=420.44 Aligned_cols=335 Identities=27% Similarity=0.426 Sum_probs=286.1
Q ss_pred cCcceeeCCCCceeccchhccccceeccCCCcccCCeE-EecCCCcCCcCccccccccccHHHHHHHHccCceeecCCce
Q 003797 65 FHNMLVVPPGSGIVHQVNLEYLGRVVFNTNGMLYPDSV-VGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGV 143 (795)
Q Consensus 65 f~~~~~~~pg~GI~Hqv~~E~~a~~v~~~~G~~~P~~v-vGtDSHT~~~GalG~la~GvGg~e~~~~m~g~~~~~~vPev 143 (795)
++++. ..||.||+|.+. +.+++|||| .|+||||.+.=|+ +|+.|+.=++.+.++|.+.|.+||+
T Consensus 458 rGgVs-lrpgdGVIHswL-----------NrmllpDtvgtGGDSHTRfpiGi---sFpAgSGlVAfAaatGvmpldmPeS 522 (852)
T COG1049 458 RGGVS-LRPGDGVIHSWL-----------NRMLLPDTVGTGGDSHTRFPIGI---SFPAGSGLVAFAAATGVMPLDMPES 522 (852)
T ss_pred cCcee-cCCCCccHHHHH-----------HhccCCcceecCCcccccccccc---eecCCCchhhhhHhcCcccCCCCce
Confidence 33444 458899999987 568999975 8999999998776 8899999999999999999999999
Q ss_pred EEEEEecccCCCcchhhHHHHHHHH------HH--h----cCccceEEEEecCCCCCCChhhhhhhhccccccCCceeee
Q 003797 144 VGFKLSGKLHNGVTATDLVLTVTQM------LR--K----HGVVGKFVEFHGDGMGELSLADRATIANMSPEYGATMGFF 211 (795)
Q Consensus 144 v~V~l~G~l~~gVtakDviL~i~~~------l~--~----~G~~g~~vEf~G~gv~~Ls~~~R~TI~NMa~E~GA~~~~f 211 (795)
|.|+++|+++||||-+||+.+|--. |. + +-..|+++|. +|+.+|.+++-++++..++|..|..+.+
T Consensus 523 VlVrFkG~mQPgitlRDlV~Aip~yaikQglltv~k~~k~NiFsGRIlEi--eglp~LkveQAFeltDasAErsaa~cti 600 (852)
T COG1049 523 VLVRFKGEMQPGITLRDLVHAIPYYAIKQGLLTVEKKGKKNIFSGRILEI--EGLPDLKVEQAFELTDASAERSAAGCTI 600 (852)
T ss_pred EEEEeccccCCCcCHHHHHhhhHHHHHHhhheeccccCccceecceeEEe--ccCcccchhhheeccchhhhhhhccceE
Confidence 9999999999999999999877533 22 1 1256999999 8899999999999999999999988865
Q ss_pred c-CCHHHHHHHhhc----------CCCh-----hHHHHHHHHHHHhhhcccCCCCCCCCcccEEEEEECCCc-ccceecC
Q 003797 212 P-VDHVTLQYLKLT----------GRSD-----ETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADV-EPCISGP 274 (795)
Q Consensus 212 p-~D~~t~~YL~~~----------gr~~-----~~~~~~~~y~~~~~l~~~~~~~D~~a~Y~~vieiDLs~l-eP~vA~P 274 (795)
- .+|...+||+.. |..+ ..++.+|+|+....++ ++|.||+|..+|+|||+.| ||++|+|
T Consensus 601 kl~~e~iiEyL~sni~l~k~MIa~Gy~d~rTL~rri~~me~wla~p~ll----e~D~dAeYaavIeidL~~IkEPila~P 676 (852)
T COG1049 601 KLNKEPIIEYLKSNIVLLKWMIAEGYGDARTLERRIDKMEAWLANPELL----EADADAEYAAVIEIDLADIKEPILAAP 676 (852)
T ss_pred ecCchhHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHhhcCcccc----CCCCCCceeEEEEeeHHHcCCCeecCC
Confidence 4 677778999754 4332 3477889999988887 6899999999999999999 8999999
Q ss_pred CCCCCccccCccchhhhhhhcccccCCCCCCCccccccceeeecCCCcccccCccEEEEEeecCCCCCChHHHHHHHHHH
Q 003797 275 KRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVA 354 (795)
Q Consensus 275 ~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IGSCTN~~~~dl~~aA~lLa 354 (795)
.+||++..+|++..+ .|+-+|||||.. .+-+++++|++|
T Consensus 677 NdpDd~r~lse~~~~---------------------------------------~idevFiGSCMt-niGh~ra~~klL- 715 (852)
T COG1049 677 NDPDDVRLLSEVAGD---------------------------------------KIDEVFIGSCMT-NIGHFRAAGKLL- 715 (852)
T ss_pred CCchHhhHhHHhcCC---------------------------------------ccceeeeehhhc-cchhHHHHHHHH-
Confidence 999999999997631 256799999976 467999999999
Q ss_pred HHHHhCCCccCCceeEEEecCCHHHHHHHHHcChHHHHHhcCcEEeccCCccccCCCCCCChhhhccccCCceeEEEEec
Q 003797 355 KKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVAAAVLS 434 (795)
Q Consensus 355 ~~A~~~G~kv~~~V~~~v~PgS~~V~~~l~~~Gl~~~l~~aGa~i~~~gCg~CiG~~g~l~~~~~~~i~~~~~~~~~vss 434 (795)
++.+-.-..|++|+|-++...++|.+||++.+|-++|+++..|||+.|+||.... ++|.. .+||
T Consensus 716 -----~~~~~~~~~rLwvapPTkmd~~qL~~EG~y~ifg~agar~E~PGCsLCMGNQarv--------~dgat---V~sT 779 (852)
T COG1049 716 -----ENAKGELPTRLWVAPPTKMDAAQLTEEGYYSIFGKAGARIEMPGCSLCMGNQARV--------ADGAT---VFST 779 (852)
T ss_pred -----HhcccCCCcceEecCCccccHHHHhhcchHHHHhhccceecCCCcccccccHhhh--------ccCCE---EEee
Confidence 5554233379999999999999999999999999999999999999999996543 35654 4799
Q ss_pred cCCCCCCCCCCccCCccccCHHHHHHHHHhCccccCCCCCCCccCCCCCeeccccCCCChHHHHHHhh
Q 003797 435 GNRNFEGRVHPLTRANYLASPPLVVAYALAGTVDIDFDKEPIGTTKDGKSVYFKDIWPTTEEIAEVVQ 502 (795)
Q Consensus 435 ~NRNF~GR~g~~~~~~yLaSP~~vaA~AlaG~I~~d~~~~plg~~~~G~~v~l~di~P~~~ei~~~~~ 502 (795)
++|||++|+|... .+||+|.+++|.+|+-|+| |+.||..+++.
T Consensus 780 STRnF~nRlg~~a-~vyL~Saelaav~aiLGki------------------------Pt~eEY~~~v~ 822 (852)
T COG1049 780 STRNFPNRLGKGA-NVYLASAELAAVCAILGKI------------------------PTVEEYMAYVA 822 (852)
T ss_pred ccccCCccccccc-ceeeeccHHHHHHHHHcCC------------------------CCHHHHHHHHH
Confidence 9999999999875 5899999999999999999 88899888776
No 36
>KOG0454 consensus 3-isopropylmalate dehydratase (aconitase superfamily) [Amino acid transport and metabolism]
Probab=100.00 E-value=2.1e-46 Score=403.03 Aligned_cols=400 Identities=23% Similarity=0.278 Sum_probs=262.6
Q ss_pred HHHHhhhcccCCCCCCCCcccEEEEEECCCcccceecCCCCCCccccCccchhhhhhhcccccCCCCCCCccccccceee
Q 003797 237 YLRANKMFVDYNEPQQERVYSSYLELNLADVEPCISGPKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKF 316 (795)
Q Consensus 237 y~~~~~l~~~~~~~D~~a~Y~~vieiDLs~leP~vA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 316 (795)
|-++..+|... .+|+.+.|+.+++|..-++.|.+.|..+||++.|+.--.++-....+ +| -...-...+
T Consensus 14 we~avaywktl-~~de~ak~dhe~~i~aidv~pt~twgtspqd~~pitGsvpdp~~vtd--------~i--~a~~~ersL 82 (502)
T KOG0454|consen 14 WESAVAYWKTL-FPDESAKSDHECQIKAIDVKPTSTWGTSPQDSPPITGSVPDPMTVTD--------KI--LARASERSL 82 (502)
T ss_pred hhhhhhhhhcc-cCcccccceeeeeccccceeeeeeecCCcccCCCcCCcCCCCcccch--------HH--HHhhhhhce
Confidence 44555666543 68999999999999999999999999999999999765432111100 00 001112356
Q ss_pred ecCCCccccc--CccEEEEEeecCCCCCChHHHHHHHHHHHHHHhCCCccCCcee-EEEecCCHHHHHHHHHcChHHHHH
Q 003797 317 SFHGQPAELK--HGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVK-TSLAPGSGVVTKYLLQSGLQKYLN 393 (795)
Q Consensus 317 ~~~g~~~~l~--~g~V~~a~IGSCTN~~~~dl~~aA~lLa~~A~~~G~kv~~~V~-~~v~PgS~~V~~~l~~~Gl~~~l~ 393 (795)
.|+|.+.... --.++-+|||||||++.+||+.+|+++ +|.|++-.+| .+++|||+.|..+++.+||.++|.
T Consensus 83 ~ymGl~pnt~v~s~~~dkVfigsctn~riedlr~aAaVv------~g~Kia~n~k~am~vpgsglvkk~aeaegld~if~ 156 (502)
T KOG0454|consen 83 VYMGLNPNTNVDSLMTDKVFIGSCTNIRIEDLREAAAVV------DGEKIAVNPKHAMFVPGSGLVKKVAEAEGLDRIFN 156 (502)
T ss_pred eeccCCCCcccceeeecceeccccccccHHHHhhhhhcc------ccceeEecccceEEecCchhhHhHHHHHhhHHHHH
Confidence 6788654332 224567999999999999999999999 9999998887 689999999999999999999999
Q ss_pred hcCcEEeccCCccccCCCCCCChhhhccccCCceeEEEEeccCCCCCCCCCCccCCccccCHHHHHHHHHhCccccCCCC
Q 003797 394 EQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVDIDFDK 473 (795)
Q Consensus 394 ~aGa~i~~~gCg~CiG~~g~l~~~~~~~i~~~~~~~~~vss~NRNF~GR~g~~~~~~yLaSP~~vaA~AlaG~I~~d~~~ 473 (795)
++||.|+..||+.|+||+.+.....+.| -+|+|||||||+|...++ +||||.+.+|.++.|+-. ++..
T Consensus 157 eagF~wreagcs~clgmnpd~l~~yerc----------astsnRnfEgrqGa~srT-hlma~s~qfAagi~~~~~-~~~~ 224 (502)
T KOG0454|consen 157 EAGFYWREAGCSFCLGMNPDGLCHYERC----------ASTSNRNFEGRQGADSRT-HLMAASMQFAAGIGGHDL-GFRE 224 (502)
T ss_pred hhceehhhccccccccCCchhccHHHHh----------hhccCCCccccccccccc-hhhhhhHHhhcccccccc-cccc
Confidence 9999999999999999985544455554 489999999999998875 999999999999999874 1111
Q ss_pred CCCccCCCCCeeccccCCCChHHHHHHhhccCCccccccccccccC-CCCCcccccCCCCCccccCC-CCc--ccCCCCC
Q 003797 474 EPIGTTKDGKSVYFKDIWPTTEEIAEVVQSSVLPDMFKSTYEAITK-GNPTWNQLSVPASKLYSWDP-NST--YIHEPPY 549 (795)
Q Consensus 474 ~plg~~~~G~~v~l~di~P~~~ei~~~~~~~~~p~~~~~~~~~~~~-~~~~w~~l~~~~~~~~~w~~-~st--~i~~pp~ 549 (795)
-+ .+ ... -..|+..-.-+-....+.+ .+..+.. .+..-.. .+.+.=++ .|+ .+..++|
T Consensus 225 ~~---~k---~~~--~~~Ps~~l~~~g~s~sv~~-----~~~li~~ia~ds~t~-----i~~~at~e~~s~~sSl~m~~F 286 (502)
T KOG0454|consen 225 FT---GK---DSL--KVSPSPFLTLKGESPSVLP-----AKDLIVSIATDSSTD-----IPRVATMEFSSTTSSLGMETF 286 (502)
T ss_pred cc---cc---ccc--cCCCCceEEeCCCCccccc-----cccchhhhhcccccc-----ccceecccCCCccccccCcce
Confidence 00 00 000 0011110000000000000 0000000 0000000 01111110 111 1223333
Q ss_pred CCcCCCCCCCCCCcccceEEeecCCCCCcCccccCCCCCCCChHhhHHHHcCCCcccccccccCCCChhhhccccccchh
Q 003797 550 FKDMTMDPPGAHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIR 629 (795)
Q Consensus 550 ~~~~~~~~~~~~~i~~~~vL~~~gd~itTD~I~PAG~i~~~s~a~~~L~~~g~~~~~~n~yg~rr~n~evm~rg~F~n~r 629 (795)
. .+. ..+.|||+||+|+| ++||+. +.+... .+..|..++
T Consensus 287 ~-----------tLc-----~vv~dNiDTD~IIP----------~qfltl--i~~~~~-------------~~~~f~~~~ 325 (502)
T KOG0454|consen 287 H-----------TLC-----GVVADNIDTDQIIP----------AQFLTL--IPSTGL-------------ILSCFYEVA 325 (502)
T ss_pred e-----------eee-----hhhhhhCCcCcccC----------hhhhcc--cccchh-------------hhhhhhhhe
Confidence 1 122 24559999999999 589986 333322 466777776
Q ss_pred hhhhhcCCCCCCcccccCCCccccccchHHHHHHcCCCcEEEeCCccCCCCchhhhhhchhhcCeeEEEecchhHHhhhh
Q 003797 630 LVNKLLNGEVGPKTVHVPTGEKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSN 709 (795)
Q Consensus 630 ~~n~~~~~~~g~~t~~~p~~~~~~v~~~A~~y~~~~~~~iiVaG~NfG~GSSRE~Aa~a~~~lGv~aVIA~SFarI~~~N 709 (795)
+. +.... + ...||++. +.|++ -.|+|+|.|||||||||||+|++.+.|+++|||+||+|||++|
T Consensus 326 ~d-----g~~k~---~----~~dFv~~v-E~~~~---~siii~~DNFGCGSSREHAPv~L~~~GakaivA~Sya~IFfrN 389 (502)
T KOG0454|consen 326 LD-----GLPKS---F----VTDFVLPV-EPLRK---YSIIIGGDNFGCGSSREHAPVCLGAAGAKAIVAPSYARIFFRN 389 (502)
T ss_pred ec-----CCchh---h----ccceeccc-cccce---eEEEeccCCcccccccccCcchhhhcccceecchhHHHHHHHh
Confidence 53 11001 0 12345554 44444 3799999999999999999999999999999999999999999
Q ss_pred hccCccccccccCccchhhccCCCCeEEEEecC
Q 003797 710 LVGMGIIPLCFKAGEDADSLGLTGHERFSIDLP 742 (795)
Q Consensus 710 lin~Gilpl~~~~~~~~~~l~~~~~~~~~idl~ 742 (795)
++.+|.+|..-+.....++. ..++..+|.+.
T Consensus 390 ~~atG~l~~~~s~~~v~de~--~~~dv~~v~l~ 420 (502)
T KOG0454|consen 390 SVATGELPPLPSEVRVCDEC--VTGDVYTVELS 420 (502)
T ss_pred HHhcCCccCCCceeeecccc--eecceeeEEcc
Confidence 99999988865443333321 22445555554
No 37
>cd01578 AcnA_Mitochon_Swivel Mitochondrial aconitase A swivel domain. Aconitase (also known as aconitate hydratase and citrate hydro-lyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. This is the aconitase swivel domain, which undergoes swivelling conformational change in the enzyme mechanism. In eukaryotes two isozymes of aconitase are known to exist: one found in the mitochondrial matrix and the other found in the cytoplasm. This is the mitochondrial form. The mitochondrial product is coded by a nuclear gene. Most members of this subfamily are mitochondrial but there are some bacterial members.
Probab=100.00 E-value=5.7e-40 Score=315.09 Aligned_cols=141 Identities=35% Similarity=0.502 Sum_probs=123.9
Q ss_pred ecCCCCCcCccccCCCCCCCChHhhHHHHcCCCcccccccccCCCChhhhccccccchhhhhhhcCCCCCCcccccCCCc
Q 003797 571 NFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGEVGPKTVHVPTGE 650 (795)
Q Consensus 571 ~~gd~itTD~I~PAG~i~~~s~a~~~L~~~g~~~~~~n~yg~rr~n~evm~rg~F~n~r~~n~~~~~~~g~~t~~~p~~~ 650 (795)
|..+|||||||||||+ ||++ |||-+.+.+.+|. +..|.+. + +-...++.++|+
T Consensus 1 k~~g~~tTDhI~pag~---------~l~~--------------R~~l~~is~~~~~--~a~n~~~-~-~~~~~~~~~~g~ 53 (149)
T cd01578 1 KAKGKCTTDHISAAGP---------WLKY--------------RGHLDNISNNLLI--GAINAEN-G-KANSVKNQVTGE 53 (149)
T ss_pred CCCCccCcccccCCCc---------cccc--------------ccCHHHHHHHHhh--hhhhhhc-c-ccccccccCCCc
Confidence 4578999999999984 7886 6788888888885 5567764 3 334567889999
Q ss_pred cccccchHHHHHHcCCCcEEEeCCccCCCCchhhhhhchhhcCeeEEEecchhHHhhhhhccCccccccccCccchhhcc
Q 003797 651 KLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKAGEDADSLG 730 (795)
Q Consensus 651 ~~~v~~~A~~y~~~~~~~iiVaG~NfG~GSSRE~Aa~a~~~lGv~aVIA~SFarI~~~Nlin~Gilpl~~~~~~~~~~l~ 730 (795)
.++++++|++|++.++++|||||+|||||||||||||+|++|||+||||+||+|||++||+|+|||||+|+++++|+.+
T Consensus 54 ~~~~~~~A~~yk~~g~~~iIVaG~nyG~GSSREhAa~a~~~lGv~aVIA~SFarI~~~Nlin~Gilpl~f~~~~~~~~i- 132 (149)
T cd01578 54 YGPVPDTARDYKAHGIKWVVIGDENYGEGSSREHAALEPRHLGGRAIITKSFARIHETNLKKQGLLPLTFADPADYDKI- 132 (149)
T ss_pred ccchHHHHHHHHHcCCCeEEEccCccCCCCchHHHHHHHHHhCCCEEEEecHHHHHHHHHHhcCCceEEecChHHHHhc-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998888875
Q ss_pred CCCCeEEEEe
Q 003797 731 LTGHERFSID 740 (795)
Q Consensus 731 ~~~~~~~~id 740 (795)
.++++++|.
T Consensus 133 -~~gd~i~i~ 141 (149)
T cd01578 133 -HPDDKVDIL 141 (149)
T ss_pred -CCCCEEEEe
Confidence 567788874
No 38
>COG0066 LeuD 3-isopropylmalate dehydratase small subunit [Amino acid transport and metabolism]
Probab=100.00 E-value=2.9e-38 Score=312.54 Aligned_cols=165 Identities=25% Similarity=0.457 Sum_probs=130.9
Q ss_pred EeecC-CCCCcCccccCCCCCCCChHhhHHHHcCCCcccccccccCCCChhhhccccccchhhhhhhcCCCCCCcccccC
Q 003797 569 LLNFG-DSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGEVGPKTVHVP 647 (795)
Q Consensus 569 L~~~g-d~itTD~I~PAG~i~~~s~a~~~L~~~g~~~~~~n~yg~rr~n~evm~rg~F~n~r~~n~~~~~~~g~~t~~~p 647 (795)
..++| ||||||+|+| ++||+. +++.+| .++.|.++|+.. |
T Consensus 11 ~~pl~~dnIDTD~IIP----------~~fLk~--i~~~gl-------------~k~~f~~~r~~~--------P------ 51 (191)
T COG0066 11 VWPLGRDNVDTDQIIP----------KRFLKT--ITRTGL-------------GKHLFEDWRYLD--------P------ 51 (191)
T ss_pred EEecCCCCCccccCcc----------HHHhcc--cCHhhh-------------hhcccccccccC--------c------
Confidence 35677 9999999999 799995 777777 577899998632 1
Q ss_pred CCccccccchHHHHHHcCCCcEEEeCCccCCCCchhhhhhchhhcCeeEEEecchhHHhhhhhccCccccccccCccchh
Q 003797 648 TGEKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKAGEDAD 727 (795)
Q Consensus 648 ~~~~~~v~~~A~~y~~~~~~~iiVaG~NfG~GSSRE~Aa~a~~~lGv~aVIA~SFarI~~~Nlin~Gilpl~~~~~~~~~ 727 (795)
.|+.+. ++|+. ++|||||+|||||||||||+||++.+||+||||+||||||++||+|+||||+...+++..+
T Consensus 52 ----dF~~n~-~~yq~---g~IlVag~NFGcGSSREHApwALk~~Gi~~VIA~SFAdIFy~Na~nnG~Lpi~~~~~~~~~ 123 (191)
T COG0066 52 ----DFVLNV-PPYQG---GDILVAGENFGCGSSREHAPWALKDYGIRAVIAPSFADIFYRNAINNGLLPIVLAEEDVTE 123 (191)
T ss_pred ----chhhcC-CccCC---ccEEEecCCCCCCccHHHHHHHHHHcCeeEEEeccHHHHHhhhhhhcCcCceecChHHHHH
Confidence 134444 56655 5899999999999999999999999999999999999999999999999999987653223
Q ss_pred hccCCCCeEEEEecCCccccCCCCceEEEEcCCCeEEEEEecCCCHHHHHHHHhc----ChHHHHHHHhh
Q 003797 728 SLGLTGHERFSIDLPSKISEIRPGQDVTVTTDSGKSFTCTVRFDTEVELAYFDHG----GILPFVIRNLI 793 (795)
Q Consensus 728 ~l~~~~~~~~~idl~~~~~~~~~g~~v~v~~~~g~~~~~~~~~~t~~e~~~~~aG----Gll~~v~~~~~ 793 (795)
.+....+++++|||+.+ +|+..++.++.+.+ +++.++++.+| ||+.|.++++.
T Consensus 124 l~~~~~g~~i~VDL~~~----------~v~~~~~~~~~f~i---~~f~~~~L~~GlD~iGlt~~~~~~i~ 180 (191)
T COG0066 124 LFEDVPGDEVTVDLETG----------EVTNPTGGEEPFEI---DDFRREILLNGLDDIGLTLQHKKEID 180 (191)
T ss_pred HHHhCCCCEEEEEcCCC----------eEEeCCCCEEEccC---CHHHHHHHHcCCcccchHHHHHHHHh
Confidence 33333578899999874 44444443444443 79999999999 99999998763
No 39
>PRK00439 leuD 3-isopropylmalate dehydratase small subunit; Reviewed
Probab=100.00 E-value=7e-38 Score=309.22 Aligned_cols=156 Identities=31% Similarity=0.516 Sum_probs=126.8
Q ss_pred EeecCCCCCcCccccCCCCCCCChHhhHHHHcCCCcccccccccCCCChhhhccccccchhhhhhhcCCCCCCcccccCC
Q 003797 569 LLNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGEVGPKTVHVPT 648 (795)
Q Consensus 569 L~~~gd~itTD~I~PAG~i~~~s~a~~~L~~~g~~~~~~n~yg~rr~n~evm~rg~F~n~r~~n~~~~~~~g~~t~~~p~ 648 (795)
+.++|||||||||+| ++||+. .+.+.|.+++|.++| +
T Consensus 4 v~~~gdnIdTD~I~P----------~~~l~~---------------~~~~~l~~~~f~~~~------p------------ 40 (163)
T PRK00439 4 VWKFGDNIDTDVIIP----------ARYLNT---------------SDPQELAKHCMEDLD------P------------ 40 (163)
T ss_pred EEEeCCCCchhhCCh----------HHHhCC---------------CCHHHHHHHHhccCC------c------------
Confidence 478999999999999 689974 245667888898875 1
Q ss_pred CccccccchHHHHHHcCCCcEEEeCCccCCCCchhhhhhchhhcCeeEEEecchhHHhhhhhccCccccccccCccchhh
Q 003797 649 GEKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKAGEDADS 728 (795)
Q Consensus 649 ~~~~~v~~~A~~y~~~~~~~iiVaG~NfG~GSSRE~Aa~a~~~lGv~aVIA~SFarI~~~Nlin~Gilpl~~~~~~~~~~ 728 (795)
+++.+.+ .+.|||||+|||||||||||+|+++++||+||||+||+|||++||+|+||||+++++ +++.
T Consensus 41 -------~f~~~~~---~g~IiVaG~NfG~GSSRE~A~~al~~~Gi~aVIA~SFa~If~rN~~n~Gll~i~~~~--~~~~ 108 (163)
T PRK00439 41 -------EFAKKVK---PGDIIVAGKNFGCGSSREHAPIALKAAGVSAVIAKSFARIFYRNAINIGLPVLECDE--AVDK 108 (163)
T ss_pred -------chHhhcC---CceEEEeCCcccCCccHHHHHHHHHHHCCCeEEEehHHHHHHhhHHhcCCCeEEchh--HHHh
Confidence 1122333 257999999999999999999999999999999999999999999999999999964 3665
Q ss_pred ccCCCCeEEEEecCCccccCCCCceEEEEcCCCeEEEEEecCCCHHHHHHHHhcChHHHHHHHh
Q 003797 729 LGLTGHERFSIDLPSKISEIRPGQDVTVTTDSGKSFTCTVRFDTEVELAYFDHGGILPFVIRNL 792 (795)
Q Consensus 729 l~~~~~~~~~idl~~~~~~~~~g~~v~v~~~~g~~~~~~~~~~t~~e~~~~~aGGll~~v~~~~ 792 (795)
+ ..+++++||+.++ +|.. ..+|+++.++. + ++.+++++++||++||++++.
T Consensus 109 l--~~gd~i~idl~~~--------~v~~-~~~g~~~~f~~-l-~~~~~~il~aGGl~~~~~~~~ 159 (163)
T PRK00439 109 I--EDGDEVEVDLETG--------VITN-LTTGEEYKFKP-I-PEFMLEILKAGGLIEYLKKKG 159 (163)
T ss_pred c--CCCCEEEEECCCC--------EEEe-CCCCeEEEEee-C-CHHHHHHHHcCCHHHHHHHhc
Confidence 4 5678999998763 3332 23478888863 3 899999999999999999875
No 40
>TIGR02084 leud 3-isopropylmalate dehydratase, small subunit. Several pairs of archaeal proteins resemble the leuC and leuD pair in length and sequence but even more closely resemble the respective domains of homoaconitase, and their identity is uncertain. The members of the seed for this model are those sequences which are gene clustered with other genes involved in leucine biosynthesis and include some archaea.
Probab=100.00 E-value=8.6e-38 Score=305.77 Aligned_cols=154 Identities=32% Similarity=0.550 Sum_probs=122.7
Q ss_pred EeecCCCCCcCccccCCCCCCCChHhhHHHHcCCCcccccccccCCCChhhhccccccchhhhhhhcCCCCCCcccccCC
Q 003797 569 LLNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGEVGPKTVHVPT 648 (795)
Q Consensus 569 L~~~gd~itTD~I~PAG~i~~~s~a~~~L~~~g~~~~~~n~yg~rr~n~evm~rg~F~n~r~~n~~~~~~~g~~t~~~p~ 648 (795)
+.++|||||||||+| ++||.. .+.+.|.++.|.++|-
T Consensus 3 v~~~gdnIdTD~I~P----------~~~l~~---------------~~~~~l~~~~f~~~~p------------------ 39 (156)
T TIGR02084 3 VHKYGDNVDTDVIIP----------ARYLNT---------------SDPKELAKHCMEDLDK------------------ 39 (156)
T ss_pred eEEcCCCccHhhccH----------HHHcCc---------------CCHHHHHhhhhccCCh------------------
Confidence 478999999999999 689863 2456778888887651
Q ss_pred CccccccchHHHHHHcCCCcEEEeCCccCCCCchhhhhhchhhcCeeEEEecchhHHhhhhhccCccccccccCccchhh
Q 003797 649 GEKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKAGEDADS 728 (795)
Q Consensus 649 ~~~~~v~~~A~~y~~~~~~~iiVaG~NfG~GSSRE~Aa~a~~~lGv~aVIA~SFarI~~~Nlin~Gilpl~~~~~~~~~~ 728 (795)
+++++++. ++|||||+|||||||||||+|+++++||+||||+||+|||+|||+|+|| |+.. .++.++.
T Consensus 40 -------~f~~~~~~---g~iiVaG~NFG~GSSRE~A~~al~~~Gi~aVIA~SFarIf~rN~iN~GL-p~~~-~~~~~~~ 107 (156)
T TIGR02084 40 -------DFVKKVKE---GDIIVAGENFGCGSSREHAPIAIKASGISCVIAKSFARIFYRNAINIGL-PIVE-SEEAVDE 107 (156)
T ss_pred -------hHHhhcCC---CCEEEccCcccCCCcHHHHHHHHHHhCCCEEEEehHHHHHHhhhhhCCC-Ceec-CHHHHHH
Confidence 12344432 5899999999999999999999999999999999999999999999997 5543 3345666
Q ss_pred ccCCCCeEEEEecCCccccCCCCceEEEEcCCCeEEEEEecCCCHHHHHHHHhcChHHHHHH
Q 003797 729 LGLTGHERFSIDLPSKISEIRPGQDVTVTTDSGKSFTCTVRFDTEVELAYFDHGGILPFVIR 790 (795)
Q Consensus 729 l~~~~~~~~~idl~~~~~~~~~g~~v~v~~~~g~~~~~~~~~~t~~e~~~~~aGGll~~v~~ 790 (795)
+ ..+++++||+.++ +|. +..+|++|.+++ + ++++++++++|||++|+++
T Consensus 108 l--~~gd~i~idl~~~--------~v~-~~~~g~~~~~~~-~-~~~~~~il~~GGl~~~~~~ 156 (156)
T TIGR02084 108 I--EEGDEVEVDLEKG--------IIK-NLTKGKEYKATP-F-PEFLQKIMKAGGLLNYVKK 156 (156)
T ss_pred h--CCCCEEEEECCCC--------EEE-EecCCEEEEeec-C-CHHHHHHHHcCCHHHHhhC
Confidence 5 4678999998763 222 234578888884 3 7999999999999999974
No 41
>PRK14023 homoaconitate hydratase small subunit; Provisional
Probab=100.00 E-value=1.4e-37 Score=307.39 Aligned_cols=154 Identities=34% Similarity=0.553 Sum_probs=125.5
Q ss_pred EeecCCCCCcCccccCCCCCCCChHhhHHHHcCCCcccccccccCCCChhhhccccccchhhhhhhcCCCCCCcccccCC
Q 003797 569 LLNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGEVGPKTVHVPT 648 (795)
Q Consensus 569 L~~~gd~itTD~I~PAG~i~~~s~a~~~L~~~g~~~~~~n~yg~rr~n~evm~rg~F~n~r~~n~~~~~~~g~~t~~~p~ 648 (795)
+.++|||||||+|+| ++||+.. .+.+.|.++.|.++|-
T Consensus 4 v~~~gdnIdTD~IiP----------a~~l~~~--------------~~~~~l~~~~f~~~~p------------------ 41 (166)
T PRK14023 4 VWKFGDNINTDDILP----------GKYAPFM--------------VGEDRFHNYAFAHLRP------------------ 41 (166)
T ss_pred eEEcCCCcchhhcch----------HHHhccC--------------CCHHHHHhhhccCCCh------------------
Confidence 478999999999999 6999751 2446677888876541
Q ss_pred CccccccchHHHHHHcCCCcEEEeCCccCCCCchhhhhhchhhcCeeEEEecchhHHhhhhhccCccccccccCccchhh
Q 003797 649 GEKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKAGEDADS 728 (795)
Q Consensus 649 ~~~~~v~~~A~~y~~~~~~~iiVaG~NfG~GSSRE~Aa~a~~~lGv~aVIA~SFarI~~~Nlin~Gilpl~~~~~~~~~~ 728 (795)
+++++|+. ++|||||+|||||||||||+|+++++||+||||+||+|||++||+|+||||++.+ ++++.
T Consensus 42 -------~f~~~~~~---g~IIVaG~NFG~GSSREhA~~al~~~Gi~aVIA~SFa~If~rN~~n~Gll~~~~~--~~~~~ 109 (166)
T PRK14023 42 -------EFASTVRP---GDILVAGRNFGLGSSREYAPEALKMLGIGAIIAKSYARIFYRNLVNLGIPPFESE--EVVDA 109 (166)
T ss_pred -------hhHhhcCC---CCEEEccCcccCCccHHHHHHHHHHHCCCEEEEehHHHHHHhhhhhcCCCccCCH--HHHHH
Confidence 12345553 5799999999999999999999999999999999999999999999999998743 45666
Q ss_pred ccCCCCeEEEEecCCccccCCCCceEEEEcCCCeEEEEEecCCCHHHHHHHHhcChHHHHHHH
Q 003797 729 LGLTGHERFSIDLPSKISEIRPGQDVTVTTDSGKSFTCTVRFDTEVELAYFDHGGILPFVIRN 791 (795)
Q Consensus 729 l~~~~~~~~~idl~~~~~~~~~g~~v~v~~~~g~~~~~~~~~~t~~e~~~~~aGGll~~v~~~ 791 (795)
+ ..+++++||+.++ + ++. +|+++.+.+ .++.+++++++|||++|++++
T Consensus 110 l--~~gd~i~vDl~~~--------~--v~~-~g~~~~~~~--~~~~~~~il~aGGl~~~~~~~ 157 (166)
T PRK14023 110 L--EDGDEVELDLETG--------V--LTR-GGETFQLRP--PPEFLLEALKEGSILEYYRKH 157 (166)
T ss_pred h--CCCCEEEEECCCC--------E--EEE-CCEEEEEee--CCHHHHHHHHcCCHHHHHHHh
Confidence 4 4578899998864 2 332 567788876 489999999999999999986
No 42
>TIGR02087 LEUD_arch 3-isopropylmalate dehydratase, small subunit. This subfamily is most closely related to the 3-isopropylmalate dehydratase, small subunits which form TIGR00171. This subfamily includes the members of TIGR02084 which are gene clustered with other genes of leucine biosynthesis. The rest of the subfamily includes mainly archaeal species which exhibit two hits to this model. In these cases it is possible that one or the other of the hits does not have a 3-isopropylmalate dehydratase activity but rather one of the other related aconitase-like activities.
Probab=100.00 E-value=1.1e-37 Score=304.75 Aligned_cols=151 Identities=28% Similarity=0.532 Sum_probs=121.6
Q ss_pred eecCCCCCcCccccCCCCCCCChHhhHHHHcCCCcccccccccCCCChhhhccccccchhhhhhhcCCCCCCcccccCCC
Q 003797 570 LNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGEVGPKTVHVPTG 649 (795)
Q Consensus 570 ~~~gd~itTD~I~PAG~i~~~s~a~~~L~~~g~~~~~~n~yg~rr~n~evm~rg~F~n~r~~n~~~~~~~g~~t~~~p~~ 649 (795)
.++|||||||||+| ++||+. + +.|.|.+++|.++| |
T Consensus 4 ~~~gdnIdTD~IiP----------~~~l~~--~-------------~~~~l~~~~f~~~~------p------------- 39 (154)
T TIGR02087 4 WKFGDDIDTDEIIP----------GRYLRT--T-------------DPDELASHAMEGID------P------------- 39 (154)
T ss_pred EEcCCCcchhhCcH----------HHHhCc--C-------------CHHHHHhhccCcCC------c-------------
Confidence 68999999999999 699964 2 45667888888765 1
Q ss_pred ccccccchHHHHHHcCCCcEEEeCCccCCCCchhhhhhchhhcCeeEEEecchhHHhhhhhccCccccccccCccchhhc
Q 003797 650 EKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKAGEDADSL 729 (795)
Q Consensus 650 ~~~~v~~~A~~y~~~~~~~iiVaG~NfG~GSSRE~Aa~a~~~lGv~aVIA~SFarI~~~Nlin~Gilpl~~~~~~~~~~l 729 (795)
+++.+.+. ++|||||+|||||||||||+|+++.+||+||||+||+|||++||+|+||||+++++ +.
T Consensus 40 ------~f~~~~~~---g~iiVaG~NFG~GSSRE~A~~al~~~Gi~aVIA~SFa~If~rN~in~Glp~i~~~~----~~- 105 (154)
T TIGR02087 40 ------EFAKKVRP---GDVIVAGKNFGCGSSREQAALALKAAGIAAVIAESFARIFYRNAINIGLPLIEAKT----EG- 105 (154)
T ss_pred ------hhhhcCCC---CcEEEcCCcccCCccHHHHHHHHHHhCCCEEEeehHHHHHHhhhhhcCCCcEecCH----HH-
Confidence 11122222 47999999999999999999999999999999999999999999999998888764 22
Q ss_pred cCCCCeEEEEecCCccccCCCCceEEEEcCCCeEEEEEecCCCHHHHHHHHhcChHHHHHHH
Q 003797 730 GLTGHERFSIDLPSKISEIRPGQDVTVTTDSGKSFTCTVRFDTEVELAYFDHGGILPFVIRN 791 (795)
Q Consensus 730 ~~~~~~~~~idl~~~~~~~~~g~~v~v~~~~g~~~~~~~~~~t~~e~~~~~aGGll~~v~~~ 791 (795)
+..+++++||+..+ +|. ..+|+++.+.. + ++.+++++++||+++|++++
T Consensus 106 -i~~gd~i~vdl~~~--------~v~--~~~g~~~~~~~-l-~~~~~~i~~aGGl~~~~~~~ 154 (154)
T TIGR02087 106 -IKDGDEVTVDLETG--------EIR--VNGNEEYKGEP-L-PDFLLEILREGGLLEYLKKR 154 (154)
T ss_pred -CCCCCEEEEECCCC--------EEE--ECCCeEEEEeC-C-CHHHHHHHHcCCHHHHHhcC
Confidence 34678899998763 333 35567788753 3 89999999999999999875
No 43
>PLN00072 3-isopropylmalate isomerase/dehydratase small subunit; Provisional
Probab=100.00 E-value=1.1e-35 Score=306.72 Aligned_cols=169 Identities=27% Similarity=0.398 Sum_probs=125.2
Q ss_pred cceEEeecCCCCCcCccccCCCCCCCChHhhHHHHcCCCcccccccccCCCChhhhccccccchh--hhhhhcCCCCCCc
Q 003797 565 DAYCLLNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIR--LVNKLLNGEVGPK 642 (795)
Q Consensus 565 ~~~vL~~~gd~itTD~I~PAG~i~~~s~a~~~L~~~g~~~~~~n~yg~rr~n~evm~rg~F~n~r--~~n~~~~~~~g~~ 642 (795)
..|| .++|||||||||+| ++||...... ..+.+.|.++.|.+++ +..+
T Consensus 70 ~Grv-~k~gDNIdTD~IiP----------a~~l~~~~sn----------~~~~~~l~~~~F~~l~~~~~~r--------- 119 (246)
T PLN00072 70 HGLC-FVVGDNIDTDQIIP----------AEYLTLVPSK----------PDEYEKLGSYALIGLPAFYKTR--------- 119 (246)
T ss_pred EEeE-EEeCCCcchhhccc----------HHHhcccccc----------CCCHHHHHHhhhccCCcchhhc---------
Confidence 4566 68999999999999 6899752100 0124667788887654 1111
Q ss_pred ccccCCCccccccchHHHHHHcCCCcEEEeCCccCCCCchhhhhhchhhcCeeEEEecchhHHhhhhhccCc-ccccccc
Q 003797 643 TVHVPTGEKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMG-IIPLCFK 721 (795)
Q Consensus 643 t~~~p~~~~~~v~~~A~~y~~~~~~~iiVaG~NfG~GSSRE~Aa~a~~~lGv~aVIA~SFarI~~~Nlin~G-ilpl~~~ 721 (795)
....|+. + .+ ..|||||+|||||||||||+|+++++||+||||+||+|||+|||+|+| +||++.
T Consensus 120 --~v~~Gd~----------~-~~-~~IIVaG~NFGcGSSREhA~~AL~~~GI~aVIA~SFArIF~rN~iN~GLllpi~~- 184 (246)
T PLN00072 120 --FVEPGEM----------K-TK-YSIIIGGENFGCGSSREHAPVALGAAGAKAVVAESYARIFFRNSVATGEVYPLES- 184 (246)
T ss_pred --ccCCCCC----------C-CC-ceEEEecCcccCCCcHHHHHHHHHHcCCCEEEECcHHHHHHHHHHhCCcceeecc-
Confidence 1111111 0 11 369999999999999999999999999999999999999999999999 788884
Q ss_pred CccchhhccCCCCeEEEEecCCccccCCCCceEEEEcCCCeEEEEEecCCCHHHHHHHHhcChHHHHHHHh
Q 003797 722 AGEDADSLGLTGHERFSIDLPSKISEIRPGQDVTVTTDSGKSFTCTVRFDTEVELAYFDHGGILPFVIRNL 792 (795)
Q Consensus 722 ~~~~~~~l~~~~~~~~~idl~~~~~~~~~g~~v~v~~~~g~~~~~~~~~~t~~e~~~~~aGGll~~v~~~~ 792 (795)
+.+.++.+ ..+++++||+.++ +| .+..+|++|.+++. +.+++++++||+++|++++-
T Consensus 185 ~~~~~e~i--~~Gd~i~VDl~~~--------~v-~n~t~g~~~~~~p~---~~~~~Il~aGGl~~y~r~~g 241 (246)
T PLN00072 185 EVRICEEC--KTGDVVTVELGNS--------VL-INHTTGKEYKLKPI---GDAGPVIDAGGIFAYARKTG 241 (246)
T ss_pred cHHHHHhc--CCCCEEEEECCCC--------EE-EECCCCeEEEecCC---HHHHHHHHcCCHHHHHHhhC
Confidence 33445554 4678899998753 22 23456788988873 34999999999999999873
No 44
>TIGR00171 leuD 3-isopropylmalate dehydratase, small subunit. Several pairs of archaeal proteins resemble the leuC and leuD pair in length and sequence but even more closely resemble the respective domains of homoaconitase, and their identity is uncertain. The candidate archaeal leuD proteins are not included in the seed alignment for this model and score below the trusted cutoff.
Probab=100.00 E-value=3.2e-34 Score=287.99 Aligned_cols=165 Identities=23% Similarity=0.376 Sum_probs=123.3
Q ss_pred cceEEeecCCCCCcCccccCCCCCCCChHhhHHHHcCCCcccccccccCCCChhhhccccccchhhhhhhcCCCCCCccc
Q 003797 565 DAYCLLNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGEVGPKTV 644 (795)
Q Consensus 565 ~~~vL~~~gd~itTD~I~PAG~i~~~s~a~~~L~~~g~~~~~~n~yg~rr~n~evm~rg~F~n~r~~n~~~~~~~g~~t~ 644 (795)
..++...-|||||||+|+| ++||+. +++. .+.+++|.++|+.+. .|. .+.
T Consensus 8 ~G~~~~l~~dnIDTD~IiP----------~rfl~~--~~~~-------------~l~~~~f~~~R~~~~--~g~-~~~-- 57 (188)
T TIGR00171 8 TGLVAPLDAANVDTDAIIP----------KQFLKR--ITRT-------------GFGKHLFFDWRFLDA--NGK-EPN-- 57 (188)
T ss_pred EEEEEECCCCcCcHhhhhH----------HHHhCc--CCHH-------------HHHHhcccccccccc--ccC-CCC--
Confidence 4455444499999999999 799975 3333 457889999997421 110 010
Q ss_pred ccCCCccccccchHHHHHHcCCCcEEEeCCccCCCCchhhhhhchhhcCeeEEEecchhHHhhhhhccCccccccccCcc
Q 003797 645 HVPTGEKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKAGE 724 (795)
Q Consensus 645 ~~p~~~~~~v~~~A~~y~~~~~~~iiVaG~NfG~GSSRE~Aa~a~~~lGv~aVIA~SFarI~~~Nlin~Gilpl~~~~~~ 724 (795)
+.+++|+ +.|+. ++|||||+|||||||||||+|+++.+||+||||+||+|||++||+|+|||||++++++
T Consensus 58 ------p~F~ln~-~~~~~---~~IlVaG~NFGcGSSREhA~~aL~~~Gi~aVIA~SFa~IF~rN~~nnGll~i~~~~~~ 127 (188)
T TIGR00171 58 ------PDFVLNQ-PQYQG---ASILLARENFGCGSSREHAPWALDDYGFKVIIAPSFADIFYNNSFKNGLLPIRLSYDE 127 (188)
T ss_pred ------cchhhcc-cccCC---CcEEEcCCcccCCCcHHHHHHHHHHcCCCEEEechHHHHHHHHHHHCCCCccccCHHH
Confidence 1244454 45654 5799999999999999999999999999999999999999999999999999998644
Q ss_pred chhhc--cCCCCeEEEEecCCccccCCCCceEEEEcCCCeEEEEEecCCCHHHHHHHHhc
Q 003797 725 DADSL--GLTGHERFSIDLPSKISEIRPGQDVTVTTDSGKSFTCTVRFDTEVELAYFDHG 782 (795)
Q Consensus 725 ~~~~l--~~~~~~~~~idl~~~~~~~~~g~~v~v~~~~g~~~~~~~~~~t~~e~~~~~aG 782 (795)
..+.+ ....+++++||+.++ +|+..+|+++.+++ ++..++.|-.|
T Consensus 128 i~~~~~~~~~~g~~i~vDl~~~----------~v~~~~~~~~~f~i---~~~~r~~ll~G 174 (188)
T TIGR00171 128 VKELFGQVENQGLQMTVDLENQ----------LIHDSEGKVYSFEI---DPFRKHCLING 174 (188)
T ss_pred HHHHHHHhhCCCCEEEEECCCC----------EEEeCCCeEEEEEe---CHHHHHHHHcC
Confidence 33321 136678999999874 34434667788874 68888888877
No 45
>PRK01641 leuD isopropylmalate isomerase small subunit; Provisional
Probab=100.00 E-value=2e-33 Score=285.03 Aligned_cols=160 Identities=28% Similarity=0.476 Sum_probs=123.3
Q ss_pred ceEEeecCCCCCcCccccCCCCCCCChHhhHHHHcCCCcccccccccCCCChhhhccccccchhhhhhhcCCCCCCcccc
Q 003797 566 AYCLLNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGEVGPKTVH 645 (795)
Q Consensus 566 ~~vL~~~gd~itTD~I~PAG~i~~~s~a~~~L~~~g~~~~~~n~yg~rr~n~evm~rg~F~n~r~~n~~~~~~~g~~t~~ 645 (795)
.+++...|||||||+|+| ++||+. +++ +.|.++.|.++|+... +...|
T Consensus 9 G~~~~l~~dnIDTD~IiP----------a~fl~~--~~~-------------~~l~~~~f~~~r~~~~---~~~~p---- 56 (200)
T PRK01641 9 GLAVPLDRANVDTDQIIP----------KQFLKR--ITR-------------TGFGKGLFDDWRYLDD---GQPNP---- 56 (200)
T ss_pred EEEEEcCCCCCChhhcch----------HhHcCc--CCH-------------HHHHHhhhcccccccc---CCCCC----
Confidence 466666699999999999 699874 333 4457889999986421 11111
Q ss_pred cCCCccccccchHHHHHHcCCCcEEEeCCccCCCCchhhhhhchhhcCeeEEEecchhHHhhhhhccCccccccccCccc
Q 003797 646 VPTGEKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKAGED 725 (795)
Q Consensus 646 ~p~~~~~~v~~~A~~y~~~~~~~iiVaG~NfG~GSSRE~Aa~a~~~lGv~aVIA~SFarI~~~Nlin~Gilpl~~~~~~~ 725 (795)
.+++++ ++|+. +.|||||+|||||||||||+|+++.+||+||||+||+|||++||+|+|||||+++++ .
T Consensus 57 ------~F~ln~-~~~~~---~~IlVaG~NFGcGSSRE~A~~al~~~Gi~aVIA~SFa~IF~rN~~n~Gll~i~~~~~-~ 125 (200)
T PRK01641 57 ------DFVLNQ-PRYQG---ASILLAGDNFGCGSSREHAPWALADYGFRAVIAPSFADIFYNNCFKNGLLPIVLPEE-D 125 (200)
T ss_pred ------Cccccc-cccCC---CeEEEcCCcccCCCcHHHHHHHHHHcCCCEEEechHHHHHHHHHHHCCCCeEeeCHH-H
Confidence 133444 55644 579999999999999999999999999999999999999999999999999999754 3
Q ss_pred hhhcc--C--CCCeEEEEecCCccccCCCCceEEEEcCCCeEEEEEecCCCHHHHHHHHhc
Q 003797 726 ADSLG--L--TGHERFSIDLPSKISEIRPGQDVTVTTDSGKSFTCTVRFDTEVELAYFDHG 782 (795)
Q Consensus 726 ~~~l~--~--~~~~~~~idl~~~~~~~~~g~~v~v~~~~g~~~~~~~~~~t~~e~~~~~aG 782 (795)
++.|. + ..+++++||+.++ +|+.. |+++.+++ ++..++++.+|
T Consensus 126 i~~l~~~~~~~~g~~i~vDl~~~----------~v~~~-~~~~~f~i---~~~~~~~l~~G 172 (200)
T PRK01641 126 VDELFKLVEANPGAELTVDLEAQ----------TVTAP-DKTFPFEI---DPFRRHCLLNG 172 (200)
T ss_pred HHHHHHHHhcCCCCEEEEEcCCC----------EEecC-CeEEEEEc---CHHHHHHHHcC
Confidence 44442 2 5678999999874 33322 57788874 78999999998
No 46
>cd01579 AcnA_Bact_Swivel Bacterial Aconitase-like swivel domain. Aconitase (aconitate hydratase or citrate hydrolyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediate product during the course of the reaction. This is the aconitase-like swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism. This distinct subfamily is found only in bacteria and archea. Its exact characteristics are not known.
Probab=99.98 E-value=1.3e-33 Score=265.88 Aligned_cols=121 Identities=46% Similarity=0.747 Sum_probs=95.5
Q ss_pred ecCCCCCcCccccCCCCCCCChHhhHHHHcCCCcccccccccCCCChhhhccccccchhhhhhhcCCCCCCcccccCCCc
Q 003797 571 NFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGEVGPKTVHVPTGE 650 (795)
Q Consensus 571 ~~gd~itTD~I~PAG~i~~~s~a~~~L~~~g~~~~~~n~yg~rr~n~evm~rg~F~n~r~~n~~~~~~~g~~t~~~p~~~ 650 (795)
++|||||||||+|++. +||.+ |++.+.|.+++|.+.+ |
T Consensus 1 ~~gdnidTD~IiP~~~--------~~~~~--------------~~~~~~l~~~~f~~~~-----------------p--- 38 (121)
T cd01579 1 KVGDNITTDHIMPAGA--------KVLPL--------------RSNIPAISEFVFHRVD-----------------P--- 38 (121)
T ss_pred CCCCcCChhhcCCCCc--------ccccc--------------CCCHHHHHHhhccCCC-----------------c---
Confidence 5899999999999652 46654 3455677888887542 0
Q ss_pred cccccchHHHHHHcCCCcEEEeCCccCCCCchhhhhhchhhcCeeEEEecchhHHhhhhhccCccccccccCccchhhcc
Q 003797 651 KLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKAGEDADSLG 730 (795)
Q Consensus 651 ~~~v~~~A~~y~~~~~~~iiVaG~NfG~GSSRE~Aa~a~~~lGv~aVIA~SFarI~~~Nlin~Gilpl~~~~~~~~~~l~ 730 (795)
+++.+++..+ ..|||||+|||||||||||+|+++.+||+||||+||+|||+|||+|+|||||++++++.++.+
T Consensus 39 -----~f~~~~~~~~-~~iiVaG~nFG~GSSRE~A~~al~~~Gi~aVIA~SFa~If~rN~in~Gll~i~~~~~~~~~~~- 111 (121)
T cd01579 39 -----TFAERAKAAG-PGFIVGGENYGQGSSREHAALAPMYLGVRAVLAKSFARIHRANLINFGILPLTFADEDDYDRF- 111 (121)
T ss_pred -----hHHhhcccCC-CeEEEcCCcCCCCccHHHHHHHHHHHCCCEEEEccHHHHHHhHHhhcCcceEEecChhhHhhc-
Confidence 1223333322 469999999999999999999999999999999999999999999999999999877666653
Q ss_pred CCCCeEEEEec
Q 003797 731 LTGHERFSIDL 741 (795)
Q Consensus 731 ~~~~~~~~idl 741 (795)
..+++++||+
T Consensus 112 -~~gd~i~id~ 121 (121)
T cd01579 112 -EQGDQLELPL 121 (121)
T ss_pred -CCCCEEEcCC
Confidence 4567788764
No 47
>PF00694 Aconitase_C: Aconitase C-terminal domain CAUTION: The Prosite patterns do not match this domain.; InterPro: IPR000573 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. 3-isopropylmalate dehydratase (or isopropylmalate isomerase; 4.2.1.33 from EC) catalyses the stereo-specific isomerisation of 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate. This enzyme performs the second step in the biosynthesis of leucine, and is present in most prokaryotes and many fungal species. The prokaryotic enzyme is a heterodimer composed of a large (LeuC) and small (LeuD) subunit, while the fungal form is a monomeric enzyme. Both forms of isopropylmalate are related and are part of the larger aconitase family []. Aconitases are mostly monomeric proteins which share four domains in common and contain a single, labile [4Fe-4S] cluster. Three structural domains (1, 2 and 3) are tightly packed around the iron-sulphur cluster, while a fourth domain (4) forms a deep active-site cleft. The prokaryotic enzyme is encoded by two adjacent genes, leuC and leuD, corresponding to aconitase domains 1-3 and 4 respectively [, ]. LeuC does not bind an iron-sulphur cluster. It is thought that some prokaryotic isopropylamalate dehydrogenases can also function as homoaconitase 4.2.1.36 from EC, converting cis-homoaconitate to homoisocitric acid in lysine biosynthesis []. Homoaconitase has been identified in higher fungi (mitochondria) and several archaea and one thermophilic species of bacteria, Thermus thermophilus []. This entry represents the 'swivel' domain found at the C-terminal of eukaryotic mAcn, cAcn/IPR1 and IRP2, and bacterial AcnA. This domain has a three layer beta/beta/alpha structure, and in cytosolic Acn is known to rotate between the cAcn and IRP1 forms of the enzyme. This domain is also found in the small subunit of isopropylmalate dehydratase (LeuD). More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0008152 metabolic process; PDB: 2PKP_A 2B3Y_A 2B3X_A 1V7L_B 1C97_A 1NIT_A 8ACN_A 1C96_A 1ACO_A 1NIS_A ....
Probab=99.98 E-value=3.7e-34 Score=272.15 Aligned_cols=128 Identities=41% Similarity=0.541 Sum_probs=110.6
Q ss_pred hHHHHcCCCcccccccccCCCChhhhccccccchhhhhhhcCCCCCCcccccCCCccccccchHHHHHHcCCCcEEEeCC
Q 003797 595 KYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGEVGPKTVHVPTGEKLSVFDAAMKYKSAGHGTIILAGA 674 (795)
Q Consensus 595 ~~L~~~g~~~~~~n~yg~rr~n~evm~rg~F~n~r~~n~~~~~~~g~~t~~~p~~~~~~v~~~A~~y~~~~~~~iiVaG~ 674 (795)
+||+.+|+...++++|+.++++|++|.+++|.+.++.|.+..+...+.+.+.|+++.+.+++.+++|+.++.+.||++|+
T Consensus 3 ~~~~~~G~~~~~~~s~idtd~i~p~~~~~~~~~~~l~~~l~~~~r~~~~~~~~~~~~~~f~~~~~~~~~~~~~ilv~~g~ 82 (131)
T PF00694_consen 3 KFLKIKGVAVPDFNSNIDTDQIIPAMFLGTFANTGLGNILFDDWRYGKTGYLPDGEKPDFYLNAPRYKVEGGDILVVGGE 82 (131)
T ss_dssp CCSEEEEEEEEEHHSTGGGHHHSCGGHHHSCGCTTTGGGTTTTSCBSSEEETTTTEEETHHHHHHHHHHTTTEEEEEE-S
T ss_pred ccEEEeCccccccccccccccccHHHHhccccCcchhhhhccCcceeeeeccccCcCCcchhchhhhcccCCCEEEECCC
Confidence 47777778888888888888888888888999999999988777777888889999999999999999888766677789
Q ss_pred ccCCCCchhhhhhchhhcCeeEEEecchhHHhhhhhccCccccccccC
Q 003797 675 EYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKA 722 (795)
Q Consensus 675 NfG~GSSRE~Aa~a~~~lGv~aVIA~SFarI~~~Nlin~Gilpl~~~~ 722 (795)
|||||||||||||+++++||+||||+||+|||++||+|+|||||+|++
T Consensus 83 nfG~GSSRE~A~~al~~~Gi~aVIA~SFa~If~~N~~n~Gllpl~~~~ 130 (131)
T PF00694_consen 83 NFGCGSSREHAAWALKDLGIRAVIAESFARIFRRNLINNGLLPLEFPE 130 (131)
T ss_dssp SBTBSS--THHHHHHHHTTEEEEEESSB-HHHHHHHHHTT-EEEEESC
T ss_pred cccCCcchHHHHHHHHHhCCeEEEechHHHHHHHHHHhCCceEEEecC
Confidence 999999999999999999999999999999999999999999999975
No 48
>cd01577 IPMI_Swivel Aconatase-like swivel domain of 3-isopropylmalate dehydratase and related uncharacterized proteins. 3-isopropylmalate dehydratase catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate 3-isopropylmalate. IPMI is involved in fungal and bacterial leucine biosynthesis and is also found in eukaryotes. This is the aconitase-like swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism.
Probab=99.96 E-value=2e-30 Score=231.87 Aligned_cols=73 Identities=33% Similarity=0.548 Sum_probs=63.7
Q ss_pred cEEEeCCccCCCCchhhhhhchhhcCeeEEEecchhHHhhhhhccCccccccccCccchhhccCCCCeEEEEec
Q 003797 668 TIILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKAGEDADSLGLTGHERFSIDL 741 (795)
Q Consensus 668 ~iiVaG~NfG~GSSRE~Aa~a~~~lGv~aVIA~SFarI~~~Nlin~Gilpl~~~~~~~~~~l~~~~~~~~~idl 741 (795)
+|||+|+|||||||||||+|+++++||++|||+||+|||++||+|+||||+++.++..++ +....+++++||+
T Consensus 19 ~ilVaG~nfG~GSSRE~A~~al~~~Gi~avia~sFa~If~~N~~n~Gllp~~~~~~~~~~-~~~~~g~~i~vdl 91 (91)
T cd01577 19 DIIVAGKNFGCGSSREHAPWALKDAGIRAVIAESFARIFFRNAINNGLLPVTLADEDVEE-VEAKPGDEVEVDL 91 (91)
T ss_pred CEEEecCcccCCCcHHHHHHHHHHhCCCEEEEchHHHHHHhhHhhCCCcceeeChhhhhH-hhcCCCCEEEEeC
Confidence 599999999999999999999999999999999999999999999999999987765443 2345566777764
No 49
>cd00404 Aconitase_swivel Aconitase swivel domain. Aconitase (aconitate hydratase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. This is the aconitase swivel domain, which undergoes swivelling conformational change in the enzyme mechanism. The aconitase family contains the following proteins: - Iron-responsive element binding protein (IRE-BP). IRE-BP is a cytosolic protein that binds to iron-responsive elements (IREs). IREs are stem-loop structures found in the 5'UTR of ferritin, and delta aminolevulinic acid synthase mRNAs, and in the 3'UTR of transferrin receptor mRNA. IRE-BP also express aconitase activity. - 3-isopropylmalate dehydratase (isopropylmalate isomerase), the enzyme that catalyzes the second step in the biosynthesis of leucine. - Homoaconitase (homoaconitate hydratase), an enzyme that participates in the alpha-aminoadipate pathway of lysine biosynthesis and that converts cis-homoaconitate into homoisocitric acid.
Probab=99.96 E-value=1.4e-29 Score=225.05 Aligned_cols=71 Identities=44% Similarity=0.614 Sum_probs=64.5
Q ss_pred cEEEeCCccCCCCchhhhhhchhhcCeeEEEecchhHHhhhhhccCccccccccCccchhhccCCCCeEEEEe
Q 003797 668 TIILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKAGEDADSLGLTGHERFSID 740 (795)
Q Consensus 668 ~iiVaG~NfG~GSSRE~Aa~a~~~lGv~aVIA~SFarI~~~Nlin~Gilpl~~~~~~~~~~l~~~~~~~~~id 740 (795)
+|||||+|||||||||||+|+++++|+++|||+||+|||++|++|+|+|||+|++..+++++ ..+++++||
T Consensus 17 ~iiVaG~nfG~GSSRE~A~~al~~~Gi~aVia~sfa~If~rN~~n~Gll~l~~~~~~~~~~i--~~gd~l~id 87 (88)
T cd00404 17 GVVIGDENYGTGSSREHAALELRLLGGRAVIAKSFARIFFRNLVDQGLLPLEFADPEDYLKL--HTGDELDIY 87 (88)
T ss_pred EEEEecCCeecCCCHHHHHHHHHHhCCCEEEEeCHHHHHHhhHHhcCCceEEecCcchhhhc--CCCCEEEeC
Confidence 59999999999999999999999999999999999999999999999999999987777664 456777765
No 50
>cd01674 Homoaconitase_Swivel Homoaconitase swivel domain. This family includes homoaconitase and other uncharacterized proteins of the Aconitase family. Homoaconitase is part of an unusual lysine biosynthesis pathway found only in filamentous fungi, in which lysine is synthesized via the alpha-aminoadipate pathway. In this pathway, homoaconitase catalyzes the conversion of cis-homoaconitic acid into homoisocitric acid. The reaction mechanism is believed to be similar to that of other aconitases. This is the swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism.
Probab=99.95 E-value=1.1e-28 Score=231.22 Aligned_cols=100 Identities=29% Similarity=0.466 Sum_probs=79.4
Q ss_pred cCCCCCcCccccCCCCCCCChHhhHHHHcCCCcccccccccCCCChhhhccccccchhhhhhhcCCCCCCcccccCCCcc
Q 003797 572 FGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGEVGPKTVHVPTGEK 651 (795)
Q Consensus 572 ~gd~itTD~I~PAG~i~~~s~a~~~L~~~g~~~~~~n~yg~rr~n~evm~rg~F~n~r~~n~~~~~~~g~~t~~~p~~~~ 651 (795)
..|||+||+|+| ++||..... +.|.|.+..|.+.+ |
T Consensus 2 ~~DnInTD~IiP----------~~y~~~~~~-------------~~e~la~~~~e~~d-----------------p---- 37 (129)
T cd01674 2 DADNLNTDGIYP----------GKYTYQDDI-------------TPEKMAEVCMENYD-----------------S---- 37 (129)
T ss_pred CccccchhccCc----------ccccccCCC-------------CHHHHHHhhcccCC-----------------c----
Confidence 358999999999 578732111 34566777776543 1
Q ss_pred ccccchHHHHHHcCCCcEEEeCCccCCCCchhhhhhchhhcCeeEEEecchhHHhhhhhccCccccccccC
Q 003797 652 LSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKA 722 (795)
Q Consensus 652 ~~v~~~A~~y~~~~~~~iiVaG~NfG~GSSRE~Aa~a~~~lGv~aVIA~SFarI~~~Nlin~Gilpl~~~~ 722 (795)
+++.+.+ .++|||+|+|||||||||||+|+++.+||++|||+||+|||+||++|+|||||++++
T Consensus 38 ----~f~~~v~---~gdilVaG~nFG~GSSRE~A~~al~~~Gi~~VIA~SFa~If~rN~iN~Gl~~i~~~~ 101 (129)
T cd01674 38 ----EFSTKTK---QGDILVSGFNFGTGSSREQAATALLAKGIPLVVSGSFGNIFSRNSINNALLSIELPF 101 (129)
T ss_pred ----hhhhcCC---CCCEEEeCCccCCCCcHHHHHHHHHHcCccEEEechHHHHHHHhhHhcCCCeEechH
Confidence 1222222 258999999999999999999999999999999999999999999999999999975
No 51
>PRK09238 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; Validated
Probab=99.94 E-value=4.2e-27 Score=275.90 Aligned_cols=163 Identities=21% Similarity=0.284 Sum_probs=120.0
Q ss_pred cceEEeecCCCCCcCccccCCCCCCCChHhhHHHHcCCCcccccccccCCCChhhhccccccchhhhhhhcCCCCCCccc
Q 003797 565 DAYCLLNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGEVGPKTV 644 (795)
Q Consensus 565 ~~~vL~~~gd~itTD~I~PAG~i~~~s~a~~~L~~~g~~~~~~n~yg~rr~n~evm~rg~F~n~r~~n~~~~~~~g~~t~ 644 (795)
..+| +|+|||||||||||| +|+.. |.|.+...+..|.+.+
T Consensus 167 ~g~V-~KvgdnInTD~I~Pa----------~~~~~--------------Rsdipl~a~~~~e~~~--------------- 206 (835)
T PRK09238 167 TVTV-FKVTGETNTDDLSPA----------PDAWS--------------RPDIPLHALAMLKNRR--------------- 206 (835)
T ss_pred EEEE-EEeCCCCchhccCCc----------ccccc--------------CCCHHHHHHHhccCCC---------------
Confidence 4566 899999999999995 56643 3455555555554432
Q ss_pred ccCCCccccccchHHHHHHcCCCcEEEeCCccCCCCchhhhhhchh------------hcCeeEEEecchhHHhhhhhcc
Q 003797 645 HVPTGEKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPM------------LLGVKAVIAKSFERIHRSNLVG 712 (795)
Q Consensus 645 ~~p~~~~~~v~~~A~~y~~~~~~~iiVaG~NfG~GSSRE~Aa~a~~------------~lGv~aVIA~SFarI~~~Nlin 712 (795)
| .+.+++++++..| ..|||+|+|||||||||||++++. ..+.++|||+||+|||++|++|
T Consensus 207 --p-----~f~~~i~~~~~~G-~~IivaG~nfG~GSSREhA~~al~~~~G~~ip~vP~k~~g~~VIa~SfArIFf~Nain 278 (835)
T PRK09238 207 --P-----GPIKQIEELKKKG-HPVAYVGDVVGTGSSRKSATNSVLWHMGEDIPYVPNKRAGGVVLGGKIAPIFFNTMED 278 (835)
T ss_pred --C-----cHHHHHHhhccCC-CEEEEECCCEeCCcCHHHHHHHHHHhhCCccccccccceEEEEEeCchHHHHHhhhHH
Confidence 1 0223334333344 359999999999999999999973 2335999999999999999999
Q ss_pred CccccccccCccchhhccCCCCeEEEEecCCccccCCCCceEEEEcCCCeE-EEEEecCCCHHHHHHHHhcChHHHHHHH
Q 003797 713 MGIIPLCFKAGEDADSLGLTGHERFSIDLPSKISEIRPGQDVTVTTDSGKS-FTCTVRFDTEVELAYFDHGGILPFVIRN 791 (795)
Q Consensus 713 ~Gilpl~~~~~~~~~~l~~~~~~~~~idl~~~~~~~~~g~~v~v~~~~g~~-~~~~~~~~t~~e~~~~~aGGll~~v~~~ 791 (795)
+|+|||+++ ++.+ ..++.++||+.++ .+...+|+. +.+.+ .++++++++++||++||++.|
T Consensus 279 ~GlLpIe~d----~~~i--~~Gd~i~Id~~~g----------~I~~~~g~~~~~f~l--~p~~~~div~AGGli~~i~gr 340 (835)
T PRK09238 279 SGALPIELD----VSKL--NMGDVIDIYPYKG----------KIRNETGEVIATFKL--KTDVLLDEVRAGGRIPLIIGR 340 (835)
T ss_pred cCCceEEeC----HHHc--CCCCEEEEECCCC----------EEEeCCCeEEEEEec--CcHHHHHHHHcCChHHHHHhc
Confidence 999999985 4443 4678999998764 233344432 55654 478999999999999999987
Q ss_pred hh
Q 003797 792 LI 793 (795)
Q Consensus 792 ~~ 793 (795)
-+
T Consensus 341 ~l 342 (835)
T PRK09238 341 GL 342 (835)
T ss_pred cc
Confidence 54
No 52
>cd01576 AcnB_Swivel Aconitase B swivel domain. Aconitate hydratase B is involved in energy metabolism as part of the TCA cycle. It catalyses the formation of cis-aconitate from citrate. This is the aconitase swivel domain, which undergoes swivelling conformational change in the enzyme mechanism. The domain structure of Aconitase B is different from other Aconitases in that he swivel domain that is found at N-terminus of B family is normally found at C-terminus for other Aconitases. In most members of the family, there is also a HEAT domain before domain 4, which is believed to play a role in protein-protein interaction.
Probab=99.92 E-value=1.2e-25 Score=213.36 Aligned_cols=67 Identities=21% Similarity=0.286 Sum_probs=58.2
Q ss_pred cEEEeCCccCCCCchhhhhhchh------------hcCeeEEEecchhHHhhhhhccCccccccccCccchhhccCCCCe
Q 003797 668 TIILAGAEYGSGSSRDWAAKGPM------------LLGVKAVIAKSFERIHRSNLVGMGIIPLCFKAGEDADSLGLTGHE 735 (795)
Q Consensus 668 ~iiVaG~NfG~GSSRE~Aa~a~~------------~lGv~aVIA~SFarI~~~Nlin~Gilpl~~~~~~~~~~l~~~~~~ 735 (795)
.|||+|+|||||||||||+++++ .+|++||||+||+|||+||++|+|+||++++. +. +..++
T Consensus 52 ~ilvaG~nFG~GSSRe~A~~aL~w~~g~~~~~~~~~~g~~aVia~sfa~IF~rNa~n~Gl~~i~~~~----~~--~~~GD 125 (131)
T cd01576 52 PVAYVGDVVGTGSSRKSATNSVLWHTGKDIPFVPNKRAGGVVLGGKIAPIFFNTAEDSGALPIQLDV----SV--LDMGD 125 (131)
T ss_pred eEEEECCceeeccchHHHHHHHHHHhccccccccccceEEEEEeCchhHHHHhhHHHcCCceEEeCH----HH--cCCCC
Confidence 39999999999999999999998 77999999999999999999999999999862 22 34566
Q ss_pred EEEEe
Q 003797 736 RFSID 740 (795)
Q Consensus 736 ~~~id 740 (795)
.+++|
T Consensus 126 ~l~vD 130 (131)
T cd01576 126 ILNID 130 (131)
T ss_pred EEEeC
Confidence 66665
No 53
>KOG0454 consensus 3-isopropylmalate dehydratase (aconitase superfamily) [Amino acid transport and metabolism]
Probab=99.91 E-value=1.1e-25 Score=243.43 Aligned_cols=377 Identities=14% Similarity=0.065 Sum_probs=278.1
Q ss_pred HHhcCCCCCccCCCCceEEEecccccCCCCCchhHHHHHHHHHHHHhhhhhhhhhhhccccCcceeeCCCCceeccchhc
Q 003797 5 MNKLGSDSNKINPLVPVDLVIDHSVQVDVTRSENAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLE 84 (795)
Q Consensus 5 ~~~~g~~~~~~~P~~pv~lviDH~v~~~~~~~~~a~~~n~~~e~~rn~e~~~fl~~~~~~f~~~~~~~pg~GI~Hqv~~E 84 (795)
.++++..+.+|+|.+ +...+||.+-+...+ .-.....+++..|....-.| .|-- .-.+|-.-+--.|.||.-..-
T Consensus 111 iedlr~aAaVv~g~K-ia~n~k~am~vpgsg--lvkk~aeaegld~if~eagF-~wre-agcs~clgmnpd~l~~yerca 185 (502)
T KOG0454|consen 111 IEDLREAAAVVDGEK-IAVNPKHAMFVPGSG--LVKKVAEAEGLDRIFNEAGF-YWRE-AGCSFCLGMNPDGLCHYERCA 185 (502)
T ss_pred HHHHhhhhhccccce-eEecccceEEecCch--hhHhHHHHHhhHHHHHhhce-ehhh-ccccccccCCchhccHHHHhh
Confidence 357788889999999 999999998876443 11123333444443332223 2422 222344444447999964321
Q ss_pred cccceeccCCCcccC-CeEEecCCCcCCcCccccccccccHHHHHHHHccCceeecCCceEEEEEecccCCCcchhhHHH
Q 003797 85 YLGRVVFNTNGMLYP-DSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGVTATDLVL 163 (795)
Q Consensus 85 ~~a~~v~~~~G~~~P-~~vvGtDSHT~~~GalG~la~GvGg~e~~~~m~g~~~~~~vPevv~V~l~G~l~~gVtakDviL 163 (795)
.+.-.| ....|+||||++.++.+.+|.|+|+.++.....++...+++|.++.+++.|+.+.-..++|+++
T Consensus 186 ---------stsnRnfEgrqGa~srThlma~s~qfAagi~~~~~~~~~~~~k~~~~~~Ps~~l~~~g~s~sv~~~~~li~ 256 (502)
T KOG0454|consen 186 ---------STSNRNFEGRQGADSRTHLMAASMQFAAGIGGHDLGFREFTGKDSLKVSPSPFLTLKGESPSVLPAKDLIV 256 (502)
T ss_pred ---------hccCCCccccccccccchhhhhhHHhhccccccccccccccccccccCCCCceEEeCCCCccccccccchh
Confidence 566677 5789999999999999999999999999999998889999999999999999999999999999
Q ss_pred HHHHHHHhcCccceEEEEecCCCCCCChhhhhhhhccccccCCceeeecCCHHHHHHHhhcCCChhHHHHHHHHHHHhhh
Q 003797 164 TVTQMLRKHGVVGKFVEFHGDGMGELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVAMVEGYLRANKM 243 (795)
Q Consensus 164 ~i~~~l~~~G~~g~~vEf~G~gv~~Ls~~~R~TI~NMa~E~GA~~~~fp~D~~t~~YL~~~gr~~~~~~~~~~y~~~~~l 243 (795)
.++...-..+...+..||-+--. +|+++.|+|+|||..|-+-|-.|+|++-.|+-|-....+... + -
T Consensus 257 ~ia~ds~t~i~~~at~e~~s~~s-Sl~m~~F~tLc~vv~dNiDTD~IIP~qfltli~~~~~~~~~f--------~----~ 323 (502)
T KOG0454|consen 257 SIATDSSTDIPRVATMEFSSTTS-SLGMETFHTLCGVVADNIDTDQIIPAQFLTLIPSTGLILSCF--------Y----E 323 (502)
T ss_pred hhhccccccccceecccCCCccc-cccCcceeeeehhhhhhCCcCcccChhhhcccccchhhhhhh--------h----h
Confidence 99888888888899999977666 899999999999999999999999998777766544333221 1 1
Q ss_pred cccCCCCCCC-CcccEEEEEECCCcccceecCCCCCCccccCccchhhhhhhcccccCCCCCCCccccccceeeecCCCc
Q 003797 244 FVDYNEPQQE-RVYSSYLELNLADVEPCISGPKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHGQP 322 (795)
Q Consensus 244 ~~~~~~~D~~-a~Y~~vieiDLs~leP~vA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~ 322 (795)
| +.|.+ +.|...+.+|.+..+|....|++ ||.===|+-
T Consensus 324 ~----~~dg~~k~~~~dFv~~vE~~~~~siii~~-DNFGCGSSR------------------------------------ 362 (502)
T KOG0454|consen 324 V----ALDGLPKSFVTDFVLPVEPLRKYSIIIGG-DNFGCGSSR------------------------------------ 362 (502)
T ss_pred h----eecCCchhhccceeccccccceeEEEecc-CCccccccc------------------------------------
Confidence 2 12333 78899999999999999999987 654221111
Q ss_pred ccccCccEEEEEeecCCCCCChHHHHHHHHHHHHHHhCCCccCCceeEEEecCCHHHHH-----HHHHc---ChHHHHHh
Q 003797 323 AELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVTK-----YLLQS---GLQKYLNE 394 (795)
Q Consensus 323 ~~l~~g~V~~a~IGSCTN~~~~dl~~aA~lLa~~A~~~G~kv~~~V~~~v~PgS~~V~~-----~l~~~---Gl~~~l~~ 394 (795)
.|-+|...++|+|+-..-++.|++ +++-++.|++++. ...+.|..+-+.. .+-.+ =++.+++.
T Consensus 363 ---EHAPv~L~~~GakaivA~Sya~IF----frN~~atG~l~~~--~s~~~v~de~~~~dv~~v~l~~dg~~~~i~~t~~ 433 (502)
T KOG0454|consen 363 ---EHAPVCLGAAGAKAIVAPSYARIF----FRNSVATGELPPL--PSEVRVCDECVTGDVYTVELSVDGGNQLINHTTG 433 (502)
T ss_pred ---ccCcchhhhcccceecchhHHHHH----HHhHHhcCCccCC--CceeeecccceecceeeEEcccCCcceeeeeecc
Confidence 133456788999999999887665 5666788998773 3344444433321 11121 25667778
Q ss_pred cCcEEeccCCccccCCC-CCCChhhhccccCCceeEEEEeccCCCCCCCCCCccCCccccCHHHHHHHHHhCc
Q 003797 395 QGFHIVGYGCTTCIGNS-GDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGT 466 (795)
Q Consensus 395 aGa~i~~~gCg~CiG~~-g~l~~~~~~~i~~~~~~~~~vss~NRNF~GR~g~~~~~~yLaSP~~vaA~AlaG~ 466 (795)
.+..=+.|-|..|.++. +++. . ...-+. .|+|+||||++|||.+..++|||||.+|+|++++|+
T Consensus 434 k~~f~lkP~~~aclV~~ad~I~----~-~~~ke~---mIss~~a~r~e~~~~~eg~~~la~~~~v~~~k~t~~ 498 (502)
T KOG0454|consen 434 KVYFKLKPFGDACLVIDADGIF----A-YARKEG---MISSTEANRPERMGHKEGQIYLASPYTVAASKLTGR 498 (502)
T ss_pred cceeecCcccccCcccCchHHH----H-hhcccc---ccchhhhcCccccCccccceEEccccchhhhhhcCC
Confidence 88866789999999975 2221 1 112222 579999999999999999999999999999999998
No 54
>TIGR00117 acnB aconitate hydratase 2. Aconitate hydratase (aconitase) is an enzyme of the TCA cycle. This model describes aconitase 2, AcnB, which has weak similarity to aconitase 1. It is found almost exclusively in the Proteobacteria.
Probab=99.90 E-value=4.2e-24 Score=250.18 Aligned_cols=161 Identities=21% Similarity=0.248 Sum_probs=118.1
Q ss_pred ceEEeecCCCCCcCccccCCCCCCCChHhhHHHHcCCCcccccccccCCCChhhhccccccchhhhhhhcCCCCCCcccc
Q 003797 566 AYCLLNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGEVGPKTVH 645 (795)
Q Consensus 566 ~~vL~~~gd~itTD~I~PAG~i~~~s~a~~~L~~~g~~~~~~n~yg~rr~n~evm~rg~F~n~r~~n~~~~~~~g~~t~~ 645 (795)
.+| .++||+|+||+||| |+||..| .+.+.+.+..|.+.+ ++.
T Consensus 169 g~V-~k~gddinTD~i~P----------a~~a~sr--------------~D~~~~a~~m~~~~~---------p~~---- 210 (844)
T TIGR00117 169 VTV-FKVTGETNTDDLSP----------APDAWTR--------------PDIPLHALAMLKNAR---------EGI---- 210 (844)
T ss_pred EEE-EEeCCCCchhccCC----------hhhhhcC--------------CCHHHHHHHHhhcCC---------ccH----
Confidence 454 69999999999999 6898753 233334444443322 010
Q ss_pred cCCCccccccchHHHHHHcCCCcEEEeCCccCCCCchhhhhhch-------------hhcCeeEEEecchhHHhhhhhcc
Q 003797 646 VPTGEKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGP-------------MLLGVKAVIAKSFERIHRSNLVG 712 (795)
Q Consensus 646 ~p~~~~~~v~~~A~~y~~~~~~~iiVaG~NfG~GSSRE~Aa~a~-------------~~lGv~aVIA~SFarI~~~Nlin 712 (795)
.+.-.+.++.|. .|+|+|+|||||||||||+.++ +.+| .+|||+||+|||+||++|
T Consensus 211 ---------~~~i~~~~~~Gd-~iivaG~nfG~GSSRe~A~~al~w~~g~~~p~vp~k~~G-~~Via~sfArIFfrnain 279 (844)
T TIGR00117 211 ---------EPQIEALKQKGF-PVAYVGDVVGTGSSRKSATNSVLWHMGDDIPFVPNKRGG-GLCLGGKIAPIFFNTMED 279 (844)
T ss_pred ---------HHHHHHhccCCC-eEEEeCCceecCcchHHHHHHHHHhccCccccccccccc-ceEEeccChHhhhcchhh
Confidence 011122233432 2999999999999999999999 9999 999999999999999999
Q ss_pred CccccccccCccchhhccCCCCeEEEEecCCccccCCCCceEEEEcCCCeE-EEEEecCCCHHHHHHHHhcChHHHHHHH
Q 003797 713 MGIIPLCFKAGEDADSLGLTGHERFSIDLPSKISEIRPGQDVTVTTDSGKS-FTCTVRFDTEVELAYFDHGGILPFVIRN 791 (795)
Q Consensus 713 ~Gilpl~~~~~~~~~~l~~~~~~~~~idl~~~~~~~~~g~~v~v~~~~g~~-~~~~~~~~t~~e~~~~~aGGll~~v~~~ 791 (795)
.|+|||+++ .+. +..|+.++||+.++ .|...+|++ +.+++ .++..++++++||++||+.-|
T Consensus 280 ~Gl~~ie~~----~~~--l~~GD~i~Id~~~G----------~I~n~~g~~~~~f~~--~p~~l~div~AGGli~~i~gr 341 (844)
T TIGR00117 280 SGALPIEVD----VSN--LNMGDVIDIYPYKG----------EITNHEGELLATFEL--KPETLLDEVRAGGRIPLIIGR 341 (844)
T ss_pred cCCCeEEeC----Hhh--cCCCCEEEEECCCC----------EEEeCCCCEEEEeee--CCHHHHHHHHcCCchhhhhcc
Confidence 999999985 233 45688999998764 232234544 77765 378899999999999999866
Q ss_pred hh
Q 003797 792 LI 793 (795)
Q Consensus 792 ~~ 793 (795)
-+
T Consensus 342 ~l 343 (844)
T TIGR00117 342 GL 343 (844)
T ss_pred cc
Confidence 43
No 55
>PRK14812 hypothetical protein; Provisional
Probab=99.81 E-value=2.9e-20 Score=174.35 Aligned_cols=90 Identities=27% Similarity=0.347 Sum_probs=71.0
Q ss_pred CCCchhhhhhchhhcCeeEEEecchhHHhhhhhccCccccccccCccchhhc-cCCCCeEEEEecCCccccCCCCceEEE
Q 003797 678 SGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKAGEDADSL-GLTGHERFSIDLPSKISEIRPGQDVTV 756 (795)
Q Consensus 678 ~GSSRE~Aa~a~~~lGv~aVIA~SFarI~~~Nlin~Gilpl~~~~~~~~~~l-~~~~~~~~~idl~~~~~~~~~g~~v~v 756 (795)
||||||||+|+++.+||+||||+||++||++||+|+||||++++++ .++.| ....+++++||+.++ +|
T Consensus 2 cGSSREhA~wAL~~~Gi~aVIA~SFa~IF~~N~~nnGllpi~~~~~-~~~~l~~~~~g~~i~vDL~~~----------~v 70 (119)
T PRK14812 2 AGSSREHAAWALADYGFKVVIAGSFGDIHYNNELNNGMLPIVQPRE-VREKLAQLKPTDQVTVDLEQQ----------KI 70 (119)
T ss_pred CCCcHHHHHHHHHHcCCCEEEEchHHHHHHhHHHHCCCCcccCCHH-HHHHHhccCCCCEEEEEcCCC----------EE
Confidence 9999999999999999999999999999999999999999998764 45544 346788999999874 34
Q ss_pred EcCCCeEEEEEecCCCHHHHHHHHhc
Q 003797 757 TTDSGKSFTCTVRFDTEVELAYFDHG 782 (795)
Q Consensus 757 ~~~~g~~~~~~~~~~t~~e~~~~~aG 782 (795)
+.. ++++.+.+ .+..+..|-+|
T Consensus 71 ~~~-~~~~~f~i---~~~~~~~Ll~G 92 (119)
T PRK14812 71 ISP-VEEFTFEI---DSEWKHKLLNS 92 (119)
T ss_pred EcC-CeEEEEEE---CHHHHHHHHhC
Confidence 332 35677776 34445555555
No 56
>PLN00094 aconitate hydratase 2; Provisional
Probab=99.80 E-value=1.9e-19 Score=210.96 Aligned_cols=118 Identities=22% Similarity=0.276 Sum_probs=97.8
Q ss_pred hHHHHHHcCCCcEEEeCCccCCCCchhhhhhch-------------hhcCeeEEEecchhHHhhhhhccCccccccccCc
Q 003797 657 AAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGP-------------MLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKAG 723 (795)
Q Consensus 657 ~A~~y~~~~~~~iiVaG~NfG~GSSRE~Aa~a~-------------~~lGv~aVIA~SFarI~~~Nlin~Gilpl~~~~~ 723 (795)
.-...|+.|.| |+|+|+|||||||||||+.++ +.+|+.+ ||+||+|||+||++|.|+|||+++
T Consensus 284 ~i~~lk~~g~~-iivvG~nfG~GSSResA~nsl~w~~g~~ip~vpnK~~G~~~-ia~sfArIFfrnain~G~~~Ie~~-- 359 (938)
T PLN00094 284 QIEELKKKGHP-LAYVGDVVGTGSSRKSATNSVLWFMGDDIPNVPNKRTGGVC-IGGKIAPIFFNTMEDSGALPIEMD-- 359 (938)
T ss_pred HHHHHHHcCCc-eEEECCceecCCchHHHHHHHHHhccCCCcCCccccccceE-eeceecHHHhhchhhcCCceEecc--
Confidence 44677888875 999999999999999999999 9999999 999999999999999999999985
Q ss_pred cchhhccCCCCeEEEEecCCccccCCCCceEEEEcCCCeEE-EEEecCCCHHHHHHHHhcChHHHHHHHhh
Q 003797 724 EDADSLGLTGHERFSIDLPSKISEIRPGQDVTVTTDSGKSF-TCTVRFDTEVELAYFDHGGILPFVIRNLI 793 (795)
Q Consensus 724 ~~~~~l~~~~~~~~~idl~~~~~~~~~g~~v~v~~~~g~~~-~~~~~~~t~~e~~~~~aGGll~~v~~~~~ 793 (795)
.+. +..|+.++||+.++ +| .+..+|+++ .+++ .++..++++++||++||++-|-+
T Consensus 360 --v~~--i~~GD~I~id~~~G--------~I-~n~~~g~~~~~f~~--~p~~l~d~vrAGGli~~i~gr~l 415 (938)
T PLN00094 360 --VKN--LNMGDVIDIYPYEG--------VV-KRHGTDEVITTFSL--KTPVLLDEVRAGGRIPLIIGRGL 415 (938)
T ss_pred --Hhh--cCCCCEEEEEcCCC--------EE-EecCCCeEEEeccC--CChHHHHHHHcCCcHhhhhcccc
Confidence 233 45688999998764 12 233567777 6665 37889999999999999987643
No 57
>PF06434 Aconitase_2_N: Aconitate hydratase 2 N-terminus; InterPro: IPR015929 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal region of bacterial aconitase B (AcnB), which consists of both a HEAT-like domain and a 'swivel' domain. HEAT-like domains are usually implicated in protein-protein interactions, while the 'swivel' domain is usually a mobile unit in proteins that carry it. In AcnB, this N-terminal region was shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=98.29 E-value=1.1e-06 Score=88.37 Aligned_cols=119 Identities=21% Similarity=0.271 Sum_probs=72.9
Q ss_pred chHHHHHHcCCCcEEEeCCccCCCCchhhhhhchhhcCe------------eEEEecchhHHhhhhhccCccccccccCc
Q 003797 656 DAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLLGV------------KAVIAKSFERIHRSNLVGMGIIPLCFKAG 723 (795)
Q Consensus 656 ~~A~~y~~~~~~~iiVaG~NfG~GSSRE~Aa~a~~~lGv------------~aVIA~SFarI~~~Nlin~Gilpl~~~~~ 723 (795)
++-+..|+.|.+.+.| |.--|.||||--|.-....... -.||...+|.||++-+---|-|||+++
T Consensus 44 ~~i~~lk~kg~~la~v-GdvvGtGSSRKSa~NSvlW~~G~diP~VPnKr~GGvv~G~~IAPIFfnT~edsGaLPIe~d-- 120 (204)
T PF06434_consen 44 EQIEELKEKGHPLAYV-GDVVGTGSSRKSATNSVLWHMGEDIPYVPNKRTGGVVIGGKIAPIFFNTAEDSGALPIECD-- 120 (204)
T ss_dssp HHHHHHHTTSS-EEEE-EEEEEES---THHHHHHHHHHSEEETTEEEEEE--EEEEEEE-HHHHHHHHHTT-EEEE----
T ss_pred HHHHHHHHcCCcEEEe-cCccccCcccchhhhhhhhhccCCCCCCCccCccCeEECCEEcceEeccccccCCceEEEe--
Confidence 3446677888775555 8889999999998866544322 357889999999999999999999973
Q ss_pred cchhhccCCCCeEEEEecCCccccCCCCceEEEEcCCCeE-EEEEecCCCHHHHHHHHhcChHHHHHHHhh
Q 003797 724 EDADSLGLTGHERFSIDLPSKISEIRPGQDVTVTTDSGKS-FTCTVRFDTEVELAYFDHGGILPFVIRNLI 793 (795)
Q Consensus 724 ~~~~~l~~~~~~~~~idl~~~~~~~~~g~~v~v~~~~g~~-~~~~~~~~t~~e~~~~~aGGll~~v~~~~~ 793 (795)
... +..++.++|+.-++ .+...+|+. ..+++ .++..++-++|||-+|++.-|-+
T Consensus 121 --v~~--l~~Gdvi~I~p~~g----------ki~~~~gev~~~f~l--~p~~l~DevrAGGri~LiiGR~L 175 (204)
T PF06434_consen 121 --VSS--LNTGDVITIYPYEG----------KIYKENGEVISTFEL--KPQTLLDEVRAGGRIPLIIGRGL 175 (204)
T ss_dssp ---TT----TT-EEEEETTTT----------EEEETT--EEEE-----S-TCHHHHHHHTSHHHHHHHHHH
T ss_pred --ccc--cCCCcEEEEecCCc----------EEECCCCCEEEEeec--CchhHHHHHhcCCcEEEEechHH
Confidence 333 35678899986654 233344431 22332 34567789999999999886644
No 58
>PF04412 DUF521: Protein of unknown function (DUF521); InterPro: IPR007506 This is a group of hypothetical proteins.
Probab=96.25 E-value=0.012 Score=66.74 Aligned_cols=68 Identities=26% Similarity=0.306 Sum_probs=60.4
Q ss_pred cEEEEEeecCCCCCChHHHHHHHHHHHHHHhCCCccCCceeEEEecCCHHHHHHHHHcChHHHHHhcCcEEeccCC
Q 003797 329 SVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGYGC 404 (795)
Q Consensus 329 ~V~~a~IGSCTN~~~~dl~~aA~lLa~~A~~~G~kv~~~V~~~v~PgS~~V~~~l~~~Gl~~~l~~aGa~i~~~gC 404 (795)
+|+.++|| |=--|++.++..|++| +|+|++++++++|. -|+.|+..+.+.|+.+.|+++|++|+.-.|
T Consensus 289 ~~D~V~lG-cPH~S~~El~~ia~ll------~gr~~~~~~~~~i~-t~~~v~~~a~~~G~~~~le~~G~~iv~dTC 356 (400)
T PF04412_consen 289 KVDLVALG-CPHLSLEELREIAELL------EGRKVHPNVPLWIT-TSRAVYELAERMGYVERLEKAGVQIVTDTC 356 (400)
T ss_pred CCCEEEEC-CCCCCHHHHHHHHHHH------hCCCCCCCceEEEE-CCHHHHHHHHhCCHHHHHHHcCCEEEcccc
Confidence 46677775 8888999999999999 99999999988877 689999999999999999999999997665
No 59
>COG1049 AcnB Aconitase B [Energy production and conversion]
Probab=96.10 E-value=0.012 Score=68.43 Aligned_cols=117 Identities=21% Similarity=0.310 Sum_probs=75.6
Q ss_pred hHHHHHHcCCCcEEEeCCccCCCCchhhhhhchhhcCe------------eEEEecchhHHhhhhhccCccccccccCcc
Q 003797 657 AAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLLGV------------KAVIAKSFERIHRSNLVGMGIIPLCFKAGE 724 (795)
Q Consensus 657 ~A~~y~~~~~~~iiVaG~NfG~GSSRE~Aa~a~~~lGv------------~aVIA~SFarI~~~Nlin~Gilpl~~~~~~ 724 (795)
.-+.-++.|++ ++-.|.--|.||||--|.-.....+- -.|+..-.+.||++-+---|-|||+++
T Consensus 213 ~i~~lk~Kg~~-vayvgdvvGtGSSRkSa~NsvlW~~g~diP~VPnkr~ggivlG~~IaPIFfnT~ed~GalPI~~d--- 288 (852)
T COG1049 213 QIEALKQKGHP-VAYVGDVVGTGSSRKSATNSVLWHMGDDIPYVPNKRYGGIVLGGKIAPIFFNTMEDAGALPIEVD--- 288 (852)
T ss_pred HHHHHhhcCce-EEEeccccccCcccccccceeeeecCCCCCCCCccCccceeecCeecceeeeehhhcCCCceEee---
Confidence 33566778876 55556669999999987654332221 235556678899999989999999863
Q ss_pred chhhccCCCCeEEEEecCCccccCCCCceEEEEc-CCCeEEEEEecCCCHHHHHHHHhcChHHHHHHH
Q 003797 725 DADSLGLTGHERFSIDLPSKISEIRPGQDVTVTT-DSGKSFTCTVRFDTEVELAYFDHGGILPFVIRN 791 (795)
Q Consensus 725 ~~~~l~~~~~~~~~idl~~~~~~~~~g~~v~v~~-~~g~~~~~~~~~~t~~e~~~~~aGGll~~v~~~ 791 (795)
... +..++.++|+--++ .++. .+|+. -.+..+.++..++-+++||-+|.+.-|
T Consensus 289 -v~~--l~~Gdvi~i~py~g----------ki~~~~~ge~-v~~f~lkt~~lldevrAGgripliiGr 342 (852)
T COG1049 289 -VSN--LEMGDVIDIYPYEG----------KIRNNNTGEV-VATFSLKTDVLLDEVRAGGRIPLIIGR 342 (852)
T ss_pred -ecc--ccccceEEeeccCC----------eeeccCCCcE-EEEeecCchhHHHHHhcCCceeEEEcc
Confidence 223 34567788874442 2222 23422 222223478899999999988876543
No 60
>COG1679 Predicted aconitase [General function prediction only]
Probab=94.43 E-value=0.1 Score=58.26 Aligned_cols=69 Identities=23% Similarity=0.243 Sum_probs=58.7
Q ss_pred ccEEEEEeecCCCCCChHHHHHHHHHHHHHHhCCCccCCceeEEEecCCHHHHHHHHHcChHHHHHhcCcEEeccCC
Q 003797 328 GSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGYGC 404 (795)
Q Consensus 328 g~V~~a~IGSCTN~~~~dl~~aA~lLa~~A~~~G~kv~~~V~~~v~PgS~~V~~~l~~~Gl~~~l~~aGa~i~~~gC 404 (795)
+.++..+|| |---|.+.++..|.+| +|+|-++++.++|+ -|+.|+.++.++|+++.|+++|..++.-.|
T Consensus 288 ~epdli~iG-cPHaS~~E~~~la~~l------~~r~~~~~~~~~V~-~sr~v~~~a~~~G~~~~le~~g~~vv~DtC 356 (403)
T COG1679 288 GEPDLIALG-CPHASLEELRRLAELL------KGRKRPAGVPLYVT-TSRAVYAQARKEGYLAKLEELGVKVVSDTC 356 (403)
T ss_pred CCCCEEEeC-CCCCCHHHHHHHHHHH------hccCCCCCCCEEEE-cCHHHHHHHhhhhhHHHHHHcCCEEecCce
Confidence 345667776 7777899999999999 88888888877766 789999999999999999999999987553
No 61
>cd01355 AcnX Putative Aconitase X catalytic domain. Putative Aconitase X catalytic domain. It is predicted by comparative genomic analysis. The proteins are mainly found in archaea and proteobacteria. They are distantly related to Aconitase family of proteins by sequence similarity and seconary structure prediction. The functions have not yet been experimentally characterized. Thus, the prediction should be treated with caution.
Probab=92.20 E-value=0.34 Score=55.10 Aligned_cols=69 Identities=19% Similarity=0.268 Sum_probs=57.2
Q ss_pred EEEEEeecCCCCCChHHHHHHHHHHHHHHhCCCccCCceeEEEecCCHHHHHHHHHcChHHHHHhcCcEEeccCCccccC
Q 003797 330 VVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGYGCTTCIG 409 (795)
Q Consensus 330 V~~a~IGSCTN~~~~dl~~aA~lLa~~A~~~G~kv~~~V~~~v~PgS~~V~~~l~~~Gl~~~l~~aGa~i~~~gCg~CiG 409 (795)
+++++| +|=--|.+.++.-|++| +|++++++++++|. -|+.|+ +.+.|+.+.++++|+.|+.-.|. |+-
T Consensus 279 ~dlv~l-GcPH~Sl~E~~~la~ll------~g~~~~~~~~~~v~-t~r~v~--a~~~g~~~~ie~~G~~i~~DtC~-~v~ 347 (389)
T cd01355 279 PDLVVL-GCPHASLEELRKLADLL------AGRRVAPSVPLYVT-TSRAVY--AKRMGYVDVIEKLGARVLTDTCM-VVS 347 (389)
T ss_pred CCEEEe-cCCCCCHHHHHHHHHHh------cCCccCCCCCEEEE-ccHHHH--HhhccHHHHHHHcCCEEEeeecc-eee
Confidence 556777 68888999999999999 89877777776655 567777 88999999999999999997776 664
No 62
>PF00694 Aconitase_C: Aconitase C-terminal domain CAUTION: The Prosite patterns do not match this domain.; InterPro: IPR000573 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. 3-isopropylmalate dehydratase (or isopropylmalate isomerase; 4.2.1.33 from EC) catalyses the stereo-specific isomerisation of 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate. This enzyme performs the second step in the biosynthesis of leucine, and is present in most prokaryotes and many fungal species. The prokaryotic enzyme is a heterodimer composed of a large (LeuC) and small (LeuD) subunit, while the fungal form is a monomeric enzyme. Both forms of isopropylmalate are related and are part of the larger aconitase family []. Aconitases are mostly monomeric proteins which share four domains in common and contain a single, labile [4Fe-4S] cluster. Three structural domains (1, 2 and 3) are tightly packed around the iron-sulphur cluster, while a fourth domain (4) forms a deep active-site cleft. The prokaryotic enzyme is encoded by two adjacent genes, leuC and leuD, corresponding to aconitase domains 1-3 and 4 respectively [, ]. LeuC does not bind an iron-sulphur cluster. It is thought that some prokaryotic isopropylamalate dehydrogenases can also function as homoaconitase 4.2.1.36 from EC, converting cis-homoaconitate to homoisocitric acid in lysine biosynthesis []. Homoaconitase has been identified in higher fungi (mitochondria) and several archaea and one thermophilic species of bacteria, Thermus thermophilus []. This entry represents the 'swivel' domain found at the C-terminal of eukaryotic mAcn, cAcn/IPR1 and IRP2, and bacterial AcnA. This domain has a three layer beta/beta/alpha structure, and in cytosolic Acn is known to rotate between the cAcn and IRP1 forms of the enzyme. This domain is also found in the small subunit of isopropylmalate dehydratase (LeuD). More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0008152 metabolic process; PDB: 2PKP_A 2B3Y_A 2B3X_A 1V7L_B 1C97_A 1NIT_A 8ACN_A 1C96_A 1ACO_A 1NIS_A ....
Probab=34.94 E-value=20 Score=35.11 Aligned_cols=30 Identities=27% Similarity=0.472 Sum_probs=22.9
Q ss_pred EEeecCCCCCcCccccCCCCCCCChHhhHHHHcCCCcccccc
Q 003797 568 CLLNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNS 609 (795)
Q Consensus 568 vL~~~gd~itTD~I~PAG~i~~~s~a~~~L~~~g~~~~~~n~ 609 (795)
..-.+.+|||||.|+| ++||.. +.+.++..
T Consensus 11 ~~~~~~s~idtd~i~p----------~~~~~~--~~~~~l~~ 40 (131)
T PF00694_consen 11 AVPDFNSNIDTDQIIP----------AMFLGT--FANTGLGN 40 (131)
T ss_dssp EEEEHHSTGGGHHHSC----------GGHHHS--CGCTTTGG
T ss_pred cccccccccccccccH----------HHHhcc--ccCcchhh
Confidence 4467889999999999 689974 66665543
No 63
>COG0311 PDX2 Predicted glutamine amidotransferase involved in pyridoxine biosynthesis [Coenzyme metabolism]
Probab=34.37 E-value=44 Score=34.67 Aligned_cols=75 Identities=23% Similarity=0.182 Sum_probs=45.3
Q ss_pred ceeEEEecC--CHHHHHHHHHcChHHHHHhcCcEEeccCCccccCCCCCCChhhhccccCCceeEEEEeccCCCCCCCCC
Q 003797 367 WVKTSLAPG--SGVVTKYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVH 444 (795)
Q Consensus 367 ~V~~~v~Pg--S~~V~~~l~~~Gl~~~l~~aGa~i~~~gCg~CiG~~g~l~~~~~~~i~~~~~~~~~vss~NRNF~GR~g 444 (795)
.+...|.|| |..+..-+.+.|+++.|.+.=.. .-|-=|+|.|+- -|..++.+. .+.....+-=-+-+||.-||+=
T Consensus 38 ~~d~LIiPGGESTTi~rL~~~~gl~e~l~~~~~~-G~Pv~GTCAGlI-lLakei~~~-~~~~~Lg~mdi~V~RNAfGRQ~ 114 (194)
T COG0311 38 GVDGLIIPGGESTTIGRLLKRYGLLEPLREFIAD-GLPVFGTCAGLI-LLAKEILDG-PEQPLLGLLDVTVRRNAFGRQV 114 (194)
T ss_pred cCcEEEecCccHHHHHHHHHHcCcHHHHHHHHHc-CCceEEechhhh-hhhhhhcCC-CCCcccceEEEEEEcccccccc
Confidence 467789999 77888889999999887765443 335557899962 122222210 0001001111356899999983
No 64
>COG1833 Uri superfamily endonuclease [Replication, recombination, and repair]
Probab=31.00 E-value=1.1e+02 Score=30.12 Aligned_cols=37 Identities=27% Similarity=0.470 Sum_probs=27.0
Q ss_pred eeEEEecCCHHHHHHHHHcChHHHHHhcCcEEeccCCccccCCC
Q 003797 368 VKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGYGCTTCIGNS 411 (795)
Q Consensus 368 V~~~v~PgS~~V~~~l~~~Gl~~~l~~aGa~i~~~gCg~CiG~~ 411 (795)
+..++.| ...|..+-..|.+-+-.|.+.||+-|---+
T Consensus 69 ~~a~~~~-------~~~Ecela~~ls~~~~~I~gFG~SDc~cks 105 (132)
T COG1833 69 LGAIIFP-------ERLECELARALSKNFEGIEGFGCSDCKCKS 105 (132)
T ss_pred eEEEEec-------CchHHHHHHHHHhcCCccCCCCCCCCCCcc
Confidence 3456666 334566777888899999999999997543
No 65
>TIGR00829 FRU PTS system, fructose-specific, IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Fru family is a large and complex family which includes several sequenced fructose and mannitol-specific permeases as well as several PTS components of unknown specificities. The fructose components of this family phosphorylate fructose on the 1-position. The Fru family PTS systems typically have 3 domains, IIA, IIB and IIC, which may be found as 1 or more proteins. The fructose and mannitol transporters form separate phylogenetic clusters in this family. This family is specific for the IIB domain of the fructose PTS transporters.
Probab=25.50 E-value=58 Score=29.32 Aligned_cols=31 Identities=29% Similarity=0.443 Sum_probs=25.9
Q ss_pred EeecCCCCCChHHHHHHHHHHHHHHhCCCccC
Q 003797 334 AITSCTNTSNPSVMLGAGLVAKKACELGLQVK 365 (795)
Q Consensus 334 ~IGSCTN~~~~dl~~aA~lLa~~A~~~G~kv~ 365 (795)
+|++|..|.-.- ..||+.|.+.|.+.|..++
T Consensus 2 ~vtacp~G~Aht-~lAae~L~~aA~~~G~~i~ 32 (85)
T TIGR00829 2 AVTACPTGIAHT-FMAAEALEKAAKKRGWEVK 32 (85)
T ss_pred EEecCCCcHHHH-HHHHHHHHHHHHHCCCeEE
Confidence 589999998766 4578899999999998777
No 66
>COG1445 FrwB Phosphotransferase system fructose-specific component IIB [Carbohydrate transport and metabolism]
Probab=22.02 E-value=1e+02 Score=29.85 Aligned_cols=33 Identities=33% Similarity=0.530 Sum_probs=27.0
Q ss_pred EEEeecCCCCCChHHHHHHHHHHHHHHhCCCccC
Q 003797 332 IAAITSCTNTSNPSVMLGAGLVAKKACELGLQVK 365 (795)
Q Consensus 332 ~a~IGSCTN~~~~dl~~aA~lLa~~A~~~G~kv~ 365 (795)
++.|++|..|=---.| ||+-|-+.|.+.|..|+
T Consensus 4 IVAVTACPtGIAHTyM-AAeaLe~~A~~~g~~IK 36 (122)
T COG1445 4 IVAVTACPTGIAHTYM-AAEALEKAAKKLGVEIK 36 (122)
T ss_pred EEEEecCCchHHHHHH-HHHHHHHHHHHcCCeEE
Confidence 5789999999665555 67888899999998877
Done!