Query 003797
Match_columns 795
No_of_seqs 313 out of 2614
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 04:21:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003797.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003797hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2b3y_A Iron-responsive element 100.0 2E-221 7E-226 1930.8 57.0 789 1-794 99-888 (888)
2 1c96_A Mitochondrial aconitase 100.0 2E-168 5E-173 1468.3 53.5 658 5-792 82-751 (753)
3 1l5j_A Aconitate hydratase 2; 100.0 8.9E-94 3E-98 841.2 36.1 387 1-508 421-837 (865)
4 2pkp_A Homoaconitase small sub 100.0 1.4E-39 4.6E-44 322.0 10.1 156 569-794 7-162 (170)
5 2hcu_A 3-isopropylmalate dehyd 100.0 7.8E-39 2.7E-43 325.4 10.4 180 547-782 5-187 (213)
6 1v7l_A 3-isopropylmalate dehyd 100.0 4.1E-39 1.4E-43 316.4 7.2 152 569-793 7-159 (163)
7 3vba_A Isopropylmalate/citrama 100.0 4.4E-38 1.5E-42 311.5 10.9 160 565-793 6-165 (176)
8 1l5j_A Aconitate hydratase 2; 100.0 7.3E-40 2.5E-44 385.3 -4.5 280 438-793 48-353 (865)
9 3q3w_A 3-isopropylmalate dehyd 100.0 4.1E-35 1.4E-39 295.3 7.2 164 564-782 10-177 (203)
10 3h5j_A 3-isopropylmalate dehyd 100.0 4.4E-34 1.5E-38 280.6 7.9 157 563-782 9-169 (171)
11 2r4q_A Phosphotransferase syst 41.4 22 0.00075 32.2 3.9 33 332-365 5-37 (106)
12 2r48_A Phosphotransferase syst 39.9 22 0.00077 32.2 3.7 33 332-365 5-37 (106)
13 2kyr_A Fructose-like phosphotr 31.7 30 0.001 31.6 3.2 33 332-365 8-40 (111)
14 2m1z_A LMO0427 protein; homolo 24.6 46 0.0016 30.1 3.1 33 332-365 5-37 (106)
No 1
>2b3y_A Iron-responsive element binding protein 1; IRP1 IRE-IRP1 aconitase activity, lyase; 1.85A {Homo sapiens} SCOP: c.8.2.1 c.83.1.1 PDB: 2b3x_A 3snp_A 3sn2_A 2ipy_A
Probab=100.00 E-value=2.1e-221 Score=1930.79 Aligned_cols=789 Identities=62% Similarity=1.069 Sum_probs=748.5
Q ss_pred ChHHHHhcCCCCCccCCCCceEEEecccccCCCCCchhHHHHHHHHHHHHhhhhhhhhhhhccccCcceeeCCCCceecc
Q 003797 1 MRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTRSENAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGSGIVHQ 80 (795)
Q Consensus 1 ~r~~~~~~g~~~~~~~P~~pv~lviDH~v~~~~~~~~~a~~~n~~~e~~rn~e~~~fl~~~~~~f~~~~~~~pg~GI~Hq 80 (795)
||++++++|.||+++||.+|+++++||+||++..+..++..+|+.++|+||+|+|+||+|++++|.+|+|+|||+|||||
T Consensus 99 mr~a~~~~g~d~~ki~p~~pv~lv~DH~v~~~~~~~~da~~~n~~~e~~rN~e~~~fL~w~~~~f~~~~~~~pG~GI~Hq 178 (888)
T 2b3y_A 99 MRDAVKKLGGDPEKINPVCPADLVIDHSIQVDFNRRADSLQKNQDLEFERNRERFEFLKWGSQAFHNMRIIPPGSGIIHQ 178 (888)
T ss_dssp HHHHHHHTTCCGGGSSCSSCEEEECCSSCCCSSCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEEECTTSCCHHH
T ss_pred HHHHHHhcCCChhhcCCCCCeeEEeCCCCCcCCccccCHHHHHHHHHHHHhcchHHHHHHHHHhccCCCCCCCCCCCcce
Confidence 68899999999999999999999999999999988889999999999999999999999999999999999999999999
Q ss_pred chhccccceeccCCCcccCCeEEecCCCcCCcCccccccccccHHHHHHHHccCceeecCCceEEEEEecccCCCcchhh
Q 003797 81 VNLEYLGRVVFNTNGMLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGVTATD 160 (795)
Q Consensus 81 v~~E~~a~~v~~~~G~~~P~~vvGtDSHT~~~GalG~la~GvGg~e~~~~m~g~~~~~~vPevv~V~l~G~l~~gVtakD 160 (795)
|++||||++|+.++|+++|+|||||||||||+||||+||||||++|++++|+||++||++||+|+|+|+|+|++||||||
T Consensus 179 v~lE~la~~v~~~~G~~~P~tlVGtDSHT~t~GglG~la~GVGg~eae~~mag~~~~~~~PevvgV~ltG~L~~gVtakD 258 (888)
T 2b3y_A 179 VNLEYLARVVFDQDGYYYPDSLVGTDSHTTMIDGLGILGWGVGGIEAEAVMLGQPISMVLPQVIGYRLMGKPHPLVTSTD 258 (888)
T ss_dssp HHHHTTCCSEEEETTEEEECEEEESSGGGGGGGGGTCEEEECCHHHHHHHHTTCCEEEECCCEEEEEEESCCCTTCCHHH
T ss_pred ehhhhccccccccCcccccCeEEecCCCccccCcceeEEEccCHHHHHHHHhcCcEeecCCCEEEEEEEccCCCCcchhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCccceEEEEecCCCCCCChhhhhhhhccccccCCceeeecCCHHHHHHHhhcCCChhHHHHHHHHHHH
Q 003797 161 LVLTVTQMLRKHGVVGKFVEFHGDGMGELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVAMVEGYLRA 240 (795)
Q Consensus 161 viL~i~~~l~~~G~~g~~vEf~G~gv~~Ls~~~R~TI~NMa~E~GA~~~~fp~D~~t~~YL~~~gr~~~~~~~~~~y~~~ 240 (795)
|||+|+++|+++|++||+|||+||||++||+++|||||||++|+|||+|+||+|++|++||+.+||++++++++++|+++
T Consensus 259 viL~i~~~l~~~G~vGk~vEF~G~gv~~LS~~~R~TI~NMa~E~GAt~g~fp~De~T~~YL~~~gr~~~~~~~~e~y~~a 338 (888)
T 2b3y_A 259 IVLTITKHLRQVGVVGKFVEFFGPGVAQLSIADRATIANMCPEYGATAAFFPVDEVSITYLVQTGRDEEKLKYIKKYLQA 338 (888)
T ss_dssp HHHHHHHHHHHHCCTTCEEEEESGGGTTSCHHHHHHHHHTHHHHTCSEEECCCCHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCccceEEEEecCccccccccchhhhhhcchhhCCeeEEecCcHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999889999999999
Q ss_pred hhhcccCCCCC-CCCcccEEEEEECCCcccceecCCCCCCccccCccchhhhhhhcccccCCCCCCCccccccceeeecC
Q 003797 241 NKMFVDYNEPQ-QERVYSSYLELNLADVEPCISGPKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFH 319 (795)
Q Consensus 241 ~~l~~~~~~~D-~~a~Y~~vieiDLs~leP~vA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 319 (795)
+++|++. .+| ++|.|+++++||||+|+|+||||++|||++||++++++|.+++..+++.+|+..+.+...+.++++|+
T Consensus 339 ~~l~~~l-~~d~~dA~Yd~~ieiDLs~leP~VAgP~~P~~~~plse~~~~~~~~l~~~~g~~g~~~~~~~~~~~~~~~~~ 417 (888)
T 2b3y_A 339 VGMFRDF-NDPSQDPDFTQVVELDLKTVVPCCSGPKRPQDKVAVSDMKKDFESCLGAKQGFKGFQVAPEHHNDHKTFIYD 417 (888)
T ss_dssp HTCCCCT-TCGGGCCCCSEEEEEEGGGCCSEEECSSCTTCEEEGGGHHHHHHHHHHSCSBTTBCCCCGGGTTCEEEEEET
T ss_pred HHHHhcc-CCCCCCCceEEEEEEEhhheeEeecCCCCcccccChHHhhhhHHHhhhcccccccccccchhhcccceeecC
Confidence 9999753 234 89999999999999999999999999999999999998887776543333321110110012446788
Q ss_pred CCcccccCccEEEEEeecCCCCCChHHHHHHHHHHHHHHhCCCccCCceeEEEecCCHHHHHHHHHcChHHHHHhcCcEE
Q 003797 320 GQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHI 399 (795)
Q Consensus 320 g~~~~l~~g~V~~a~IGSCTN~~~~dl~~aA~lLa~~A~~~G~kv~~~V~~~v~PgS~~V~~~l~~~Gl~~~l~~aGa~i 399 (795)
|+++.|.||+|++|||||||||||+|+|+||++|||+|+++|+||+||||++|+|||++|++||+++||+++|+++||.|
T Consensus 418 g~~~~l~~g~V~~a~IgSCTN~s~~dl~~aA~lLak~A~~kG~kv~p~Vk~~v~PGS~~V~~~l~~~Gl~~~l~~aGf~i 497 (888)
T 2b3y_A 418 NTEFTLAHGSVVIAAITSCTNTSNPSVMLGAGLLAKKAVDAGLNVMPYIKTSLSPGSGVVTYYLQESGVMPYLSQLGFDV 497 (888)
T ss_dssp TEEEEEETTBEEEEEECCHHHHTCHHHHHHHHHHHHHHHHTTCCCCTTSEEEECCSSHHHHHHHHHTSCHHHHHHTTCCB
T ss_pred CccccccCCcEEEEEEecCCCCCcHHHHHHHHHHHHHHHhcCCCCCCCceEEEeCCCHHHHHHHHHcCcHHHHHHcCCEE
Confidence 99889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCccccCCCCCCChhhhccccCCceeEEEEeccCCCCCCCCCCccCCccccCHHHHHHHHHhCccccCCCCCCCccC
Q 003797 400 VGYGCTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVDIDFDKEPIGTT 479 (795)
Q Consensus 400 ~~~gCg~CiG~~g~l~~~~~~~i~~~~~~~~~vss~NRNF~GR~g~~~~~~yLaSP~~vaA~AlaG~I~~d~~~~plg~~ 479 (795)
++||||+|+||++++.++++.+|.+||+++++|||+||||+||||+..+++|||||+|||||||+|+|++|+++||+|.+
T Consensus 498 ~~~GC~~CiG~~~~l~~~~~~~i~~ge~~~~~vsS~NRNFeGR~g~~~~~~yLaSP~lvaA~AiaG~i~~d~~~dpl~~~ 577 (888)
T 2b3y_A 498 VGYGCMTCIGNSGPLPEPVVEAITQGDLVAVGVLSGNRNFEGRVHPNTRANYLASPPLVIAYAIAGTIRIDFEKEPLGVN 577 (888)
T ss_dssp CCSSCGGGGTCCCCCCHHHHHHHHHHTCCCEEEESSSCCCTTSSCTTCSEEEECCHHHHHHHHHHCBSCCCTTTSCSEEE
T ss_pred eCCCCcceeCCCCCCCchhhhhhccCCeeEEEEeccCCCcCcCCCCCccccEecCHHHHHHHHhcCeeecccccCccccC
Confidence 99999999999999999999999999998889999999999999999999999999999999999999999999999999
Q ss_pred CCCCeeccccCCCChHHHHHHhhccCCccccccccccccCCCCCcccccCCCCCccccCCCCcccCCCCCCCcCCCCCCC
Q 003797 480 KDGKSVYFKDIWPTTEEIAEVVQSSVLPDMFKSTYEAITKGNPTWNQLSVPASKLYSWDPNSTYIHEPPYFKDMTMDPPG 559 (795)
Q Consensus 480 ~~G~~v~l~di~P~~~ei~~~~~~~~~p~~~~~~~~~~~~~~~~w~~l~~~~~~~~~w~~~st~i~~pp~~~~~~~~~~~ 559 (795)
++|+++||+||||+.+|+++++...+++++|.+.|..++.+++.|+.++++.++.|+|+++||||++||||+.++..+++
T Consensus 578 ~~G~~v~l~diwP~~~ei~~~~~~~~~~~~f~~~y~~~~~~~~~~~~~~~~~~~~~~w~~~St~i~~~p~f~~~~~~~~~ 657 (888)
T 2b3y_A 578 AKGQQVFLKDIWPTRDEIQAVERQYVIPGMFKEVYQKIETVNESWNALATPSDKLFFWNSKSTYIKSPPFFENLTLDLQP 657 (888)
T ss_dssp TTTEEECHHHHCCCHHHHHHHHHHHCCHHHHHHHHTTTTTCCHHHHHCCCCCCSSCCCCTTCSSCCCCGGGTTCCSSCCC
T ss_pred CCCCcccccccCCchhhhHHHHHhcCCHHHhhhhhccccCCccccccCCCCCCCccccCCCcccccCCCCccccccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888888
Q ss_pred CCCcccceEEeecCCCCCcCccccCCCCCCCChHhhHHHHcCCCcccccccccCCCChhhhccccccchhhhhhhcCCCC
Q 003797 560 AHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGEV 639 (795)
Q Consensus 560 ~~~i~~~~vL~~~gd~itTD~I~PAG~i~~~s~a~~~L~~~g~~~~~~n~yg~rr~n~evm~rg~F~n~r~~n~~~~~~~ 639 (795)
++++.++++|+++|||||||||||||+|+++||||+||+++|+++++|||||+||||||||+||+|+|+|+.|+|.+ .+
T Consensus 658 ~~~~~~~~~l~~~gdnitTDhIsPAg~i~~~s~ag~~L~~~gv~~~~f~syg~rRgn~~vm~rg~F~n~r~~n~l~~-~~ 736 (888)
T 2b3y_A 658 PKSIVDAYVLLNLGDSVTTDHISPAGNIARNSPAARYLTNRGLTPREFNSYGSRRGNDAVMARGTFANIRLLNRFLN-KQ 736 (888)
T ss_dssp CCCEEEEEEEEEBCSCCBHHHHSCCSCCCSSSHHHHHHHHTTCCGGGCCCTGGGTTCHHHHHHTTTCCTTCEETTTT-EE
T ss_pred cccccCcEEEEEecCCccccccccCccccCCCHHHHHHHhcCCChHHhccccccccCHHHHhhhccccccccccccc-cc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999986 89
Q ss_pred CCcccccCCCccccccchHHHHHHcCCCcEEEeCCccCCCCchhhhhhchhhcCeeEEEecchhHHhhhhhccCcccccc
Q 003797 640 GPKTVHVPTGEKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLC 719 (795)
Q Consensus 640 g~~t~~~p~~~~~~v~~~A~~y~~~~~~~iiVaG~NfG~GSSRE~Aa~a~~~lGv~aVIA~SFarI~~~Nlin~Gilpl~ 719 (795)
|++|+++|+|+.+++||+|++|+++|.++|||||+|||||||||||+|+++++||+||||+||+||||+||+|||||||+
T Consensus 737 g~~t~~~p~g~~~~~~d~a~~y~~~g~~~iivaG~nfG~GSSREhAa~a~~~~Gi~aVIA~SFarIf~~Nli~~Gllpl~ 816 (888)
T 2b3y_A 737 APQTIHLPSGEILDVFDAAERYQQAGLPLIVLAGKEYGAGSSRDWAAKGPFLLGIKAVLAESYERIHRSNLVGMGVIPLE 816 (888)
T ss_dssp CSEEEETTTTEEEEHHHHHHHHHHTTCCEEEECCSSBTBSCCCTHHHHHHHHTTEEEEEESCBCHHHHHHHHHHTCEEEE
T ss_pred CCceeecCCCccccchhhHHHHHhcCCceEEECCCCCCCCccHHHHHHHHHHcCeeEEEEhhHHHHHHhhhhhcCCceEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCccchhhccCCCCeEEEEecCCccccCCCCceEEEEcCCCeEEEEEecCCCHHHHHHHHhcChHHHHHHHhhc
Q 003797 720 FKAGEDADSLGLTGHERFSIDLPSKISEIRPGQDVTVTTDSGKSFTCTVRFDTEVELAYFDHGGILPFVIRNLIK 794 (795)
Q Consensus 720 ~~~~~~~~~l~~~~~~~~~idl~~~~~~~~~g~~v~v~~~~g~~~~~~~~~~t~~e~~~~~aGGll~~v~~~~~~ 794 (795)
|+++++++.+.+.++++++|++.+ .++||+.+++...+|++|.++++++++.|++|+++||+|||+++++++
T Consensus 817 ~~~~~~~~~~~~~~~~~i~i~l~~---~~~~g~~v~v~~~~G~~~~~~~~~~t~~e~~~~~aGGiL~yv~~~~~~ 888 (888)
T 2b3y_A 817 YLPGENADALGLTGQERYTIIIPE---NLKPQMKVQVKLDTGKTFQAVMRFDTDVELTYFLNGGILNYMIRKMAK 888 (888)
T ss_dssp ECTTCCHHHHTCCSCSCEEECCCS---SCCTTCEEEEEETTSCEEEEEECCCSHHHHHHHHHTSHHHHHHHHHHC
T ss_pred ecccccHHHhccCCCceEEEEccc---ccCCCcEEEEEeCCCeEEEEEecCCCHHHHHHHHcCCHHHHHHHHhhC
Confidence 999999998888888999999764 488998776644678999999999999999999999999999999863
No 2
>1c96_A Mitochondrial aconitase; lyase, tricarboxylic acid cycle, iron-sulfur, mitochondrion, transit peptide, 4Fe-4S, 3D-structure; HET: FLC; 1.81A {Bos taurus} SCOP: c.8.2.1 c.83.1.1 PDB: 1c97_A* 1b0k_A* 1b0j_A* 7acn_A* 6acn_A* 5acn_A* 1b0m_A* 1ami_A* 1amj_A 8acn_A* 1fgh_A* 1aco_A* 1nis_A* 1nit_A
Probab=100.00 E-value=1.6e-168 Score=1468.33 Aligned_cols=658 Identities=30% Similarity=0.475 Sum_probs=571.0
Q ss_pred HHhcCCCCCccCCCCceEEEecccccCCCCCchhHHHHHHHHHHHHhhhhhhhhhhhccccCcceeeCCCCceeccchhc
Q 003797 5 MNKLGSDSNKINPLVPVDLVIDHSVQVDVTRSENAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGSGIVHQVNLE 84 (795)
Q Consensus 5 ~~~~g~~~~~~~P~~pv~lviDH~v~~~~~~~~~a~~~n~~~e~~rn~e~~~fl~~~~~~f~~~~~~~pg~GI~Hqv~~E 84 (795)
++.+|.++ |..|.++++||++|++..++. ++..++.+|.|+|.|++|.+++| ||+|+|||+||||||++|
T Consensus 82 l~~~G~~~----v~~P~~~~~DH~v~~~~~~~~-----d~~~~~~~n~e~~~~l~~~a~~~-gi~~~~pg~GI~Hqv~~E 151 (753)
T 1c96_A 82 FISSGLPK----VAVPSTIHCDHLIEAQLGGEK-----DLRRAKDINQEVYNFLATAGAKY-GVGFWRPGSGIIHQIILE 151 (753)
T ss_dssp HHHHTCSS----CSSCEEEECCSSCCBSSCHHH-----HHHHHHHHTHHHHHHHHHHHHHH-TCEEECTTSBCHHHHHHH
T ss_pred HHHhCCCC----CCCCCceecCCCCCCCCCccc-----chhhhhhhHHHHHHHHHHHHHHC-CCEEECCCCCeeCeEecc
Confidence 56678774 556677999999999866533 35678899999999999999999 899999999999999999
Q ss_pred cccceeccCCCcccCC-eEEecCCCcCCcCccccccccccHHHHHHHHccCceeecCCceEEEEEecccCCCcchhhHHH
Q 003797 85 YLGRVVFNTNGMLYPD-SVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGVTATDLVL 163 (795)
Q Consensus 85 ~~a~~v~~~~G~~~P~-~vvGtDSHT~~~GalG~la~GvGg~e~~~~m~g~~~~~~vPevv~V~l~G~l~~gVtakDviL 163 (795)
+ +++|+ ++|||||||||+||||+||||||++|++++|+||+|||++||+|+|+|+|+|++|||||||||
T Consensus 152 ~----------~~~Pg~~ivGtDSHT~t~GalG~la~GvG~~e~~~vmagq~~~~~~P~vv~V~l~G~L~~gVtakDviL 221 (753)
T 1c96_A 152 N----------YAYPGVLLIGTDSHTPNGGGLGGICIGVGGADAVDVMAGIPWELKCPKVIGVKLTGSLSGWTSPKDVIL 221 (753)
T ss_dssp H----------TCCTTCEEEESSTTGGGGGGGTCEEEECCHHHHHHHHHTCCEEEECCEEEEEEEESCCCTTCCHHHHHH
T ss_pred c----------ccCCCcEEecCCCCCCccchhhhheeccCHHHHHHHHhCCeeeccCCcEEEEEEeeecCCCccHHHHHH
Confidence 5 56786 799999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCccceEEEEecCCCCCCChhhhhhhhccccccCCceeeecCCHHHHHHHhhcCCChhHHHHHHHHHHHhhh
Q 003797 164 TVTQMLRKHGVVGKFVEFHGDGMGELSLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDETVAMVEGYLRANKM 243 (795)
Q Consensus 164 ~i~~~l~~~G~~g~~vEf~G~gv~~Ls~~~R~TI~NMa~E~GA~~~~fp~D~~t~~YL~~~gr~~~~~~~~~~y~~~~~l 243 (795)
+|+++|+++|++||+|||+||||++||+++|||||||++|+|||+|+||+|++|++||+.++|.+ .++++++|++ +
T Consensus 222 ~ii~~l~~~G~~g~~vEf~G~gv~~LS~~~R~TI~NMa~E~GA~~gifp~De~T~~YL~~~gr~~-~~~~~~~y~~---~ 297 (753)
T 1c96_A 222 KVAGILTVKGGTGAIVEYHGPGVDSISCTGMATICNMGAEIGATTSVFPYNHRMKKYLSKTGRAD-IANLADEFKD---H 297 (753)
T ss_dssp HHHHHHTTTTTTTEEEEEESGGGGGSCHHHHHHHHHHGGGGTCSEEECCCCHHHHHHHHHTTCHH-HHHHHHHTGG---G
T ss_pred HHHHHhccCCcceEEEEEECCccccCCcchhhhhhccchhhCcccccccCcHHHHHHHHhcCCcH-HHHHHHHHHh---h
Confidence 99999999999999999999999999999999999999999999999999999999999999887 4677777765 4
Q ss_pred cccCCCCCCCCcccEEEEEECCCcccceecCCCCCCccccCccchhhhhhhcccccCCCCCCCccccccceeeecCCCcc
Q 003797 244 FVDYNEPQQERVYSSYLELNLADVEPCISGPKRPHDRVPLKEMKADWHSCLDNKVGFKGFAVPKETQEKVVKFSFHGQPA 323 (795)
Q Consensus 244 ~~~~~~~D~~a~Y~~vieiDLs~leP~vA~P~~P~~~~~v~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~ 323 (795)
| .+|++|.|+++++||||+|+|+||||++|+|++||+|+...+.+ ++++
T Consensus 298 l----~~D~~A~Yd~~ieiDls~leP~va~P~~P~~~~~v~e~~~~~~~--------------------------~~~~- 346 (753)
T 1c96_A 298 L----VPDPGCHYDQVIEINLSELKPHINGPFTPDLAHPVAEVGSVAEK--------------------------EGWP- 346 (753)
T ss_dssp S----SCCTTCCCSEEEEEEGGGCCCEEECSSSTTCEEEHHHHHHHHHH--------------------------HTCC-
T ss_pred c----cCCCCCceeEEEEEEccccceeecCCCCCcceeEhHHhhhhHhh--------------------------cCCc-
Confidence 4 47999999999999999999999999999999999999865432 0111
Q ss_pred cccCccEEEEEeecCCCCCChHHHHHHHHHHHHHHhCCCccCCceeEEEecCCHHHHHHHHHcChHHHHHhcCcEEeccC
Q 003797 324 ELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGYG 403 (795)
Q Consensus 324 ~l~~g~V~~a~IGSCTN~~~~dl~~aA~lLa~~A~~~G~kv~~~V~~~v~PgS~~V~~~l~~~Gl~~~l~~aGa~i~~~g 403 (795)
-+|++||||||||||++||+.|| .|+|+|+++|+ +++||++|+|||++|++||+++||+++|+++||.|++||
T Consensus 347 ----~~Vd~~~IGSCTN~~~~Dl~~AA-~ilkga~~~~v--~~~V~~~v~PgS~~V~~~~~~~Gl~~~l~~aG~~i~~~g 419 (753)
T 1c96_A 347 ----LDIRVGLIGSCTNSSYEDMGRSA-AVAKQALAHGL--KCKSQFTITPGSEQIRATIERDGYAQVLRDVGGIVLANA 419 (753)
T ss_dssp ----CBEEEEEEBTTTBCSHHHHHHHH-HHHHHHHTTTC--CCSSEEEECCSBHHHHHHHHHTTHHHHHHHTTEEECCSS
T ss_pred ----cceEEEEEecCCCCCHHHHHHHH-HHhccHhhcCC--CCCceEEEeCCCHHHHHHHHHcCcHHHHHHcCcEEecCC
Confidence 14889999999999999966665 45677777664 566999999999999999999999999999999999999
Q ss_pred CccccCCCCCCChhhhccccCCceeEEEEeccCCCCCCCCC-CccCCccccCHHHHHHHHHhCccccCCCCCCCccCCCC
Q 003797 404 CTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVH-PLTRANYLASPPLVVAYALAGTVDIDFDKEPIGTTKDG 482 (795)
Q Consensus 404 Cg~CiG~~g~l~~~~~~~i~~~~~~~~~vss~NRNF~GR~g-~~~~~~yLaSP~~vaA~AlaG~I~~d~~~~plg~~~~G 482 (795)
||+|+||+++.. + ..++- .++|||+||||+|||| +..+.+|||||+|||||||+|+|++|+.+||+ .+++|
T Consensus 420 Cg~CiG~~~~~~--~----~~~~~-~~~vsT~NRNF~GR~gG~p~~~~yLaSP~~vaA~AiaG~i~~d~~~d~l-~~~~g 491 (753)
T 1c96_A 420 CGPCIGQWDRKD--I----KKGEK-NTIVTSYNRNFTGRNDANPETHAFVTSPEIVTALAIAGTLKFNPETDFL-TGKDG 491 (753)
T ss_dssp CGGGGTCBCCCS--S----CTTCC-EEEEESSSCCCTTTTTSCTTEEEEECCHHHHHHHHHHCBTTCCTTTCCC-CCSSC
T ss_pred ceeeecCCCCcc--c----ccCCc-ceEEecccCCcccccCCCCCCceeecCHHHHHHHHHcCCcccCcccccc-cCCCC
Confidence 999999997631 1 11121 1478999999999994 55577999999999999999999999999999 88999
Q ss_pred CeeccccCCCChHHHHHHhhccCCccccccccccccCCCCCcccccCCC-CCccccCCCCcccCCCCCCCcCCCCCCCCC
Q 003797 483 KSVYFKDIWPTTEEIAEVVQSSVLPDMFKSTYEAITKGNPTWNQLSVPA-SKLYSWDPNSTYIHEPPYFKDMTMDPPGAH 561 (795)
Q Consensus 483 ~~v~l~di~P~~~ei~~~~~~~~~p~~~~~~~~~~~~~~~~w~~l~~~~-~~~~~w~~~st~i~~pp~~~~~~~~~~~~~ 561 (795)
++++|+| |+.+|+++ .+|. .++..|+..+.+. +..|.|+++|+|++.||+|+. ++..
T Consensus 492 ~~v~l~~--p~~~e~~~--------~~f~-------~~~~~~~~~~~~~~~~~~~~~p~s~~~~~~~~f~~-----~~~~ 549 (753)
T 1c96_A 492 KKFKLEA--PDADELPR--------AEFD-------PGQDTYQHPPKDSSGQRVAVSPTSQRLQLLEPFDK-----WDGK 549 (753)
T ss_dssp CCCCCCC--CCCCSSCS--------SCCC-------CCSCCEECCCSCCTTCCCCCCTTCSSBCCCCCCCC-----CCSS
T ss_pred CeeeecC--Cccchhhh--------hhcc-------CCccccccCCCCCCcceEeeCCCCccccCCCCCCC-----CCcc
Confidence 9999999 88887532 2332 3567788776554 568999999999999999975 3446
Q ss_pred CcccceEEeecCCCCCcCccccCCCCCCCChHhhHHHHcCCCcccccccccCCCChhhhccccccchhhhhhhcC--CCC
Q 003797 562 GVKDAYCLLNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLLN--GEV 639 (795)
Q Consensus 562 ~i~~~~vL~~~gd~itTD~I~PAG~i~~~s~a~~~L~~~g~~~~~~n~yg~rr~n~evm~rg~F~n~r~~n~~~~--~~~ 639 (795)
++.++++|+++||+|||||||||| +||++ ||+|+|++ .|.|.. +.+
T Consensus 550 ~~~~~~vL~klgd~iTTDhIsPAG---------~~L~~----------------------rg~f~ni~-~n~l~~~~~~~ 597 (753)
T 1c96_A 550 DLEDLQILIKVKGKCTTDHISAAG---------PWLKF----------------------RGHLDNIS-NNLLIGAINIE 597 (753)
T ss_dssp CEEEEEEEEEBCSCCBHHHHBCCG---------GGGGG----------------------TBCHHHHG-GGBTTTSBBTT
T ss_pred ccccceEEEeccCCcccccccccc---------hhhcc----------------------ccchhhhh-hhhcccccccc
Confidence 899999999999999999999986 69986 46788887 666643 223
Q ss_pred CC---cccccCCCccccccchHHHHHHcCCCcEEEeCCccCCCCchhhhhhchhhcCeeEEEecchhHHhhhhhccCccc
Q 003797 640 GP---KTVHVPTGEKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGII 716 (795)
Q Consensus 640 g~---~t~~~p~~~~~~v~~~A~~y~~~~~~~iiVaG~NfG~GSSRE~Aa~a~~~lGv~aVIA~SFarI~~~Nlin~Gil 716 (795)
++ ++++.|+++.+.++++|++|+++|.++|||||+|||||||||||+|+++++||+||||+||+||||+||+|||||
T Consensus 598 ~g~~~~~~~~~~~~~~~~~d~a~~y~~~g~~~iivag~n~G~GSSRe~Aa~~~~~~Gi~avIa~sfarI~~~N~i~~Gll 677 (753)
T 1c96_A 598 NRKANSVRNAVTQEFGPVPDTARYYKQHGIRWVVIGDENYGEGASREHSALEPRHLGGRAIITKSFARIHETNLKKQGLL 677 (753)
T ss_dssp TCCBSCEECTTTCCEECHHHHHHHHHHHTCCEEEECCSSBTBSCCCTHHHHHHHHTTEEEEEESCBCHHHHHHHHHTTCE
T ss_pred CCCcceeEEecCCcccccHHHHHHHHHhCCCeEEEecCcCCCCcchHHHHhhHHHcCeeEEEehhHHHHHHhhhhhcCCc
Confidence 33 788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCccchhhccCCCCeEEEEecCCccccCCCCceEEE--EcCCCeEEEEE--ecCCCHHHHHHHHhcChHHHHHHHh
Q 003797 717 PLCFKAGEDADSLGLTGHERFSIDLPSKISEIRPGQDVTV--TTDSGKSFTCT--VRFDTEVELAYFDHGGILPFVIRNL 792 (795)
Q Consensus 717 pl~~~~~~~~~~l~~~~~~~~~idl~~~~~~~~~g~~v~v--~~~~g~~~~~~--~~~~t~~e~~~~~aGGll~~v~~~~ 792 (795)
||+|+++++++. ++++++++|+. +.++.+|..+++ +..+|+++.+. ++ +|+.|++||++||+|||++++.
T Consensus 678 pl~~~~~~~~~~--l~~gd~i~I~g---l~~l~~g~~v~~~i~~~~g~~~~~~~~~~-~t~~e~~~~~aGGlLnyvk~~~ 751 (753)
T 1c96_A 678 PLTFADPADYNK--IHPVDKLTIQG---LKDFAPGKPLKCIIKHPNGTQETILLNHT-FNETQIEWFRAGSALNRMKELQ 751 (753)
T ss_dssp EEEESSGGGGGG--CCTTCEEEEEC---GGGCCTTCCEEEEEECTTSCEEEEEEECC-CCHHHHHHHHHTSHHHHHHHHS
T ss_pred ceeecCcchhhh--cCCCCEEEEcC---hHHcCCCceEEEEEEecCCcEEEEEEeCC-CCHHHHHHHHcCCHHHHHHHhh
Confidence 999998878886 46788999972 335788876654 45667555544 44 4999999999999999999864
No 3
>1l5j_A Aconitate hydratase 2; molecular recognition, RNA binding, citric acid cycle, heat- like domain, lyase; HET: TRA; 2.40A {Escherichia coli} SCOP: a.118.15.1 c.8.2.1 c.83.1.1
Probab=100.00 E-value=8.9e-94 Score=841.16 Aligned_cols=387 Identities=24% Similarity=0.374 Sum_probs=339.1
Q ss_pred ChHHHHhcCCCCCccCCCCceEEEecccccCCCCCchhHHHHHHHHHHHHhhhhhhhhhhhccccCcceeeCCCCceecc
Q 003797 1 MRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTRSENAVKANMELEFQRNKERFAFLKWGSSAFHNMLVVPPGSGIVHQ 80 (795)
Q Consensus 1 ~r~~~~~~g~~~~~~~P~~pv~lviDH~v~~~~~~~~~a~~~n~~~e~~rn~e~~~fl~~~~~~f~~~~~~~pg~GI~Hq 80 (795)
||++++++|.+ +++|.. +..++||.++.+.. ...++.||.++|.+.+|+ .++|||+|||||
T Consensus 421 ~~~~~~~lg~~--~~~~d~-vv~~~dh~~~~~~~---------~~~e~~~~~~~Fa~~~g~-------~~~~pg~GI~Hq 481 (865)
T 1l5j_A 421 TRDELKDLACL--GFSADL-VMQSFCHTAAYPKP---------VDVNTHHTLPDFIMNRGG-------VSLRPGDGVIHS 481 (865)
T ss_dssp HHHHHHHTTCC--SCCSSC-EEECCCSSSSSCCH---------HHHHHHHHHHHHHHTTTC-------EECCTTSBCHHH
T ss_pred HHHHHHHcCCC--cCCCCe-EEEECCCCCcCCCH---------HHHHHHHHHHHHHHHcCC-------eEeCCCCceeee
Confidence 58999999965 688888 77899999887532 345567888888777764 468999999999
Q ss_pred chhccccceeccCCCcccCC-eEEecCCCcCCcCccccccccccHHHHHHHHccCceeecCCceEEEEEecccCCCcchh
Q 003797 81 VNLEYLGRVVFNTNGMLYPD-SVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLHNGVTAT 159 (795)
Q Consensus 81 v~~E~~a~~v~~~~G~~~P~-~vvGtDSHT~~~GalG~la~GvGg~e~~~~m~g~~~~~~vPevv~V~l~G~l~~gVtak 159 (795)
++.| +++|+ ++|||||||||+||+ |+|.|++|++.+|++|++|+++||+|+|+|+|+|++|||+|
T Consensus 482 ~l~~-----------~~~PG~~ivGtDSHT~~~~Gl---g~g~G~g~vA~a~atG~~~~~vPevv~V~l~G~L~~gVtaK 547 (865)
T 1l5j_A 482 WLNR-----------MLLPDTVGTGGDSHTRFPIGI---SFPAGSGLVAFAAATGVMPLDMPESVLVRFKGKMQPGITLR 547 (865)
T ss_dssp HHGG-----------GCCTTCEEEESSTTCCCSSSE---ECCCCHHHHHHHHHHSBCCEECCCEEEEEEESCCCTTCCHH
T ss_pred eecc-----------cccccceEEeCCCCccccccc---eeCccHHHHHHHHHcCceeecCCCEEEEEEEeeCCCCCChH
Confidence 8643 77896 569999999999975 56789999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhc------------CccceEEEEecCCCCCCChhhhhhhhccccccCCceeeecCC-HHHHHHHhh---
Q 003797 160 DLVLTVTQMLRKH------------GVVGKFVEFHGDGMGELSLADRATIANMSPEYGATMGFFPVD-HVTLQYLKL--- 223 (795)
Q Consensus 160 DviL~i~~~l~~~------------G~~g~~vEf~G~gv~~Ls~~~R~TI~NMa~E~GA~~~~fp~D-~~t~~YL~~--- 223 (795)
||||+|++.+.++ |++||+||| +||++||+++|||||||++|+||++|+||+| ++|++||+.
T Consensus 548 DvIL~i~~~~i~~G~l~v~k~g~~~~~~G~~vEf--~Gv~~LS~~~R~TI~NMa~E~GA~~g~f~~dDe~t~~YL~~~~~ 625 (865)
T 1l5j_A 548 DLVHAIPLYAIKQGLLTVEKKGKKNIFSGRILEI--EGLPDLKVEQAFELTDASAERSAAGCTIKLNKEPIIEYLNSNIV 625 (865)
T ss_dssp HHHHHHHHHHHHTTSBCSCSTTCCBTTTTSEEEE--ESCTTCCHHHHHHHHHGGGTTTCSEEEECCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccccCcccceeeEEEEE--cccccCChhhhhhHhhcchhcCCeeEEEeCCHHHHHHHHHhhhh
Confidence 9999999887632 347999999 5799999999999999999999999999976 788999998
Q ss_pred -------cCCC-----hhHHHHHHHHHHHhhhcccCCCCCCCCcccEEEEEECCCc-ccceecCCCCCCccccCccchhh
Q 003797 224 -------TGRS-----DETVAMVEGYLRANKMFVDYNEPQQERVYSSYLELNLADV-EPCISGPKRPHDRVPLKEMKADW 290 (795)
Q Consensus 224 -------~gr~-----~~~~~~~~~y~~~~~l~~~~~~~D~~a~Y~~vieiDLs~l-eP~vA~P~~P~~~~~v~e~~~~~ 290 (795)
+||. .++.+.+++|++++++| .+|++|.|+++++||||+| ||+||+|++|||++|++++++.
T Consensus 626 ~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~l----~~D~dA~Y~~~ieiDLs~l~eP~VA~P~~Pd~~~~vse~~~~- 700 (865)
T 1l5j_A 626 LLKWMIAEGYGDRRTLERRIQGMEKWLANPELL----EADADAEYAAVIDIDLADIKEPILCAPNDPDDARPLSAVQGE- 700 (865)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHSCCCC----CCCTTCCCSEEEEEEGGGCCSCEEECTTCTTCEEEGGGTTTC-
T ss_pred hhhhhhccCCccchhHHHHHHHHHHHHhcccee----ccCCCCcEEEEEEEEcccCCCCEecCCCChHhccchhhhccc-
Confidence 6764 34567788999988888 4799999999999999999 8999999999999999998631
Q ss_pred hhhhcccccCCCCCCCccccccceeeecCCCcccccCccEEEEEeecCCCCCChHHHHHHHHHHHHHHhCCCccCCceeE
Q 003797 291 HSCLDNKVGFKGFAVPKETQEKVVKFSFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKT 370 (795)
Q Consensus 291 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~l~~g~V~~a~IGSCTN~~~~dl~~aA~lLa~~A~~~G~kv~~~V~~ 370 (795)
.|+++|||||||+ ++||+.||.+| ||++++++|++
T Consensus 701 --------------------------------------~Id~v~IGSCTtn-~eDl~~AA~il------kg~~v~~~v~~ 735 (865)
T 1l5j_A 701 --------------------------------------KIDEVFIGSCMTN-IGHFRAAGKLL------DAHKGQLPTRL 735 (865)
T ss_dssp --------------------------------------BCCEEEECSTTCC-HHHHHHHHHHH------HHSCSCCSSEE
T ss_pred --------------------------------------ccceEEEecCCCC-HHHHHHHHHHH------cCcccCCCCCE
Confidence 2557999999877 99999999999 88999999999
Q ss_pred EEecCCHHHHHHHHHcChHHHHHhcCcEEeccCCccccCCCCCCChhhhccccCCceeEEEEeccCCCCCCCCCCccCCc
Q 003797 371 SLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGYGCTTCIGNSGDLDESVASTITDNDIVAAAVLSGNRNFEGRVHPLTRAN 450 (795)
Q Consensus 371 ~v~PgS~~V~~~l~~~Gl~~~l~~aGa~i~~~gCg~CiG~~g~l~~~~~~~i~~~~~~~~~vss~NRNF~GR~g~~~~~~ 450 (795)
+|+|||++|+++|+++|++++|+++||+|.+||||+|+||++.+ .+|++ ++||+||||+||||+. ..+
T Consensus 736 ~V~PgS~~V~~~l~~eGl~~~l~~aGa~v~~pgCg~CiGn~~~~--------~~ge~---~isTsNRNF~GR~G~~-~~~ 803 (865)
T 1l5j_A 736 WVAPPTRMDAAQLTEEGYYSVFGKSGARIEIPGCSLCMGNQARV--------ADGAT---VVSTSTRNFPNRLGTG-ANV 803 (865)
T ss_dssp EECCSBHHHHHHHHHTTHHHHHHHHTCEECCSSCGGGTCSSSCC--------CTTCE---EEESSSCCCTTSSSTT-CEE
T ss_pred EEECCCHHHHHHHHHcCcHHHHHHcCCEEcCCccccccCcCCcC--------CCCCE---EEecCCcCCCCCCCCC-cce
Confidence 99999999999999999999999999999999999999998654 34664 6799999999999955 579
Q ss_pred cccCHHHHHHHHHhCccccCCCCCCCccCCCCCeeccccCCCChHHHHHHhhccCCcc
Q 003797 451 YLASPPLVVAYALAGTVDIDFDKEPIGTTKDGKSVYFKDIWPTTEEIAEVVQSSVLPD 508 (795)
Q Consensus 451 yLaSP~~vaA~AlaG~I~~d~~~~plg~~~~G~~v~l~di~P~~~ei~~~~~~~~~p~ 508 (795)
|||||++||||||+|+| |+.+|+.+++...++|+
T Consensus 804 yLaSP~~vAAsAiaG~i------------------------~~p~e~~~~~~~~~~~~ 837 (865)
T 1l5j_A 804 FLASAELAAVAALIGKL------------------------PTPEEYQTYVAQVDKTA 837 (865)
T ss_dssp EECCHHHHHHHHHHSBC------------------------CCHHHHHHHHHHHHTTH
T ss_pred EECCHHHHHHHHhCCcC------------------------CCHHHHHHHHHhhcCCc
Confidence 99999999999999999 45677888887777773
No 4
>2pkp_A Homoaconitase small subunit; beta barrel, amino-acid biosynthesis, leucine biosynthesis, structural genomics, NPPSFA; 2.10A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=1.4e-39 Score=321.97 Aligned_cols=156 Identities=31% Similarity=0.536 Sum_probs=127.1
Q ss_pred EeecCCCCCcCccccCCCCCCCChHhhHHHHcCCCcccccccccCCCChhhhccccccchhhhhhhcCCCCCCcccccCC
Q 003797 569 LLNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGEVGPKTVHVPT 648 (795)
Q Consensus 569 L~~~gd~itTD~I~PAG~i~~~s~a~~~L~~~g~~~~~~n~yg~rr~n~evm~rg~F~n~r~~n~~~~~~~g~~t~~~p~ 648 (795)
++++|||||||||+| ++||+ |.|.+.+.+++|.++| +
T Consensus 7 v~~~~dnIdTD~IiP----------a~~l~---------------~~~~~~l~~~~f~~~~------p------------ 43 (170)
T 2pkp_A 7 AHKFGDDVDTDAIIP----------GPYLR---------------TTDPYELASHCMAGID------E------------ 43 (170)
T ss_dssp EEECCSCCBHHHHSC----------GGGGS---------------CCCHHHHHTTTTTTTC------T------------
T ss_pred EEECCCCCChhhcCh----------HHHhC---------------CCCHHHHHHHhcccCC------C------------
Confidence 688999999999999 68986 2355666788888765 1
Q ss_pred CccccccchHHHHHHcCCCcEEEeCCccCCCCchhhhhhchhhcCeeEEEecchhHHhhhhhccCccccccccCccchhh
Q 003797 649 GEKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKAGEDADS 728 (795)
Q Consensus 649 ~~~~~v~~~A~~y~~~~~~~iiVaG~NfG~GSSRE~Aa~a~~~lGv~aVIA~SFarI~~~Nlin~Gilpl~~~~~~~~~~ 728 (795)
+++.+++. ++|||||+|||||||||||||+++++||+||||+||+||||+||+|||||||+|+ ++.
T Consensus 44 -------~f~~~~~~---~~iivaG~nfG~GSSREhAa~a~~~~Gi~aVIA~SFarIf~~N~in~Gllpl~~~----~~~ 109 (170)
T 2pkp_A 44 -------NFPKKVKE---GDVIVAGENFGCGSSREQAVIAIKYCGIKAVIAKSFARIFYRNAINVGLIPIIAN----TDE 109 (170)
T ss_dssp -------THHHHCCT---TCEEEECTTBTBSSCCHHHHHHHHTTTCCEEEESCBCHHHHHHHHHHTCEEEECC----GGG
T ss_pred -------chHHhCCC---CCEEEecCCCCCCCCHHHHHHHHHHhCCcEEEEchHHHHHHhhHHHCCCceEEec----HHH
Confidence 23344432 5899999999999999999999999999999999999999999999999999996 444
Q ss_pred ccCCCCeEEEEecCCccccCCCCceEEEEcCCCeEEEEEecCCCHHHHHHHHhcChHHHHHHHhhc
Q 003797 729 LGLTGHERFSIDLPSKISEIRPGQDVTVTTDSGKSFTCTVRFDTEVELAYFDHGGILPFVIRNLIK 794 (795)
Q Consensus 729 l~~~~~~~~~idl~~~~~~~~~g~~v~v~~~~g~~~~~~~~~~t~~e~~~~~aGGll~~v~~~~~~ 794 (795)
+.++++++||+..+ +|. +..+|+++.+. ..++.+++++++||+|||++++++.
T Consensus 110 --l~~gd~i~idl~~~--------~v~-~~~~g~~~~~~--~~~~~~~~~l~aGGll~~~~~~~~~ 162 (170)
T 2pkp_A 110 --IKDGDIVEIDLDKE--------EIV-ITNKNKTIKCE--TPKGLEREILAAGGLVNYLKKRKLI 162 (170)
T ss_dssp --CCTTCEEEEETTTT--------EEE-EGGGTEEEECB--CCCHHHHHHHHTTSHHHHHHHHHHH
T ss_pred --cCCCcEEEEECCCC--------EEE-ECCCCeEEEEE--eCCHHHHHHHHcCCHHHHHHHHHHh
Confidence 46788999997653 222 33567777663 3599999999999999999998763
No 5
>2hcu_A 3-isopropylmalate dehydratase small subunit; beta barrel, lyase; 2.10A {Streptococcus mutans}
Probab=100.00 E-value=7.8e-39 Score=325.43 Aligned_cols=180 Identities=23% Similarity=0.377 Sum_probs=134.9
Q ss_pred CCCCCcCCCCCCCCCCc--ccceEEeecCCCCCcCccccCCCCCCCChHhhHHHHcCCCcccccccccCCCChhhhcccc
Q 003797 547 PPYFKDMTMDPPGAHGV--KDAYCLLNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGT 624 (795)
Q Consensus 547 pp~~~~~~~~~~~~~~i--~~~~vL~~~gd~itTD~I~PAG~i~~~s~a~~~L~~~g~~~~~~n~yg~rr~n~evm~rg~ 624 (795)
.|||.+++..+...+.+ ..++++.+.||||||||||| ++||+. +++.+| .+++
T Consensus 5 ~~~~~~~~~~~~~M~~f~~~~g~v~~l~~dnIdTD~IiP----------a~~L~~--~~~~~l-------------~~~~ 59 (213)
T 2hcu_A 5 ASMTGGQQMGRGSMEEFTIYTGTTVPLMNDNIDTDQILP----------KQFLKL--IDKKGF-------------GKYL 59 (213)
T ss_dssp --------CCCCCCCCCSEEEEEEEEECCSCCCHHHHSC----------GGGGGS--CTTSCC-------------GGGT
T ss_pred ccccCCcccccccCCCceEEEEEEEEcCCCCCChhhcch----------HHHhCc--CCHHHH-------------HHHH
Confidence 46777666555544444 67789888899999999999 699984 555554 7899
Q ss_pred ccchhhhhhhcCCCCCCcccccCCCccccccchHHHHHHcCCCcEEEeCCccCCCCchhhhhhchhhcCeeEEEecchhH
Q 003797 625 FANIRLVNKLLNGEVGPKTVHVPTGEKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFER 704 (795)
Q Consensus 625 F~n~r~~n~~~~~~~g~~t~~~p~~~~~~v~~~A~~y~~~~~~~iiVaG~NfG~GSSRE~Aa~a~~~lGv~aVIA~SFar 704 (795)
|+++|+.|+ +|.+++. ++.+. ++|+. ++|||||+|||||||||||+|+++++||+||||+||+|
T Consensus 60 f~~~r~~~~--~g~~~p~----------f~~~~-~~~~~---~~IlvaG~NfGcGSSREhA~~al~~~Gi~aVIA~SFAr 123 (213)
T 2hcu_A 60 MYEWRYLDN--NYTENPD----------FIFNQ-PEYRE---ASILITGDNFGAGSSREHAAWALADYGFKVIVAGSFGD 123 (213)
T ss_dssp THHHHBSST--TCCBCTT----------SGGGS-GGGTT---CCEEEECSSBTCSSCCHHHHHHHHHHTCCEEEESCBCH
T ss_pred hhccccccc--CCCCCCC----------ccccc-hhhcC---CcEEEecCCCCCCCCHHHHHHHHHHhCCcEEEEchHHH
Confidence 999998875 4444331 23333 35654 58999999999999999999999999999999999999
Q ss_pred HhhhhhccCccccccccCccchhhc-cCCCCeEEEEecCCccccCCCCceEEEEcCCCeEEEEEecCCCHHHHHHHHhc
Q 003797 705 IHRSNLVGMGIIPLCFKAGEDADSL-GLTGHERFSIDLPSKISEIRPGQDVTVTTDSGKSFTCTVRFDTEVELAYFDHG 782 (795)
Q Consensus 705 I~~~Nlin~Gilpl~~~~~~~~~~l-~~~~~~~~~idl~~~~~~~~~g~~v~v~~~~g~~~~~~~~~~t~~e~~~~~aG 782 (795)
|||+||+|||||||+|+++ +++.| ....+++++||+.++ +|+ ..+| ++.+++ +++.+++|.+|
T Consensus 124 IF~~N~in~GlLpl~~~~~-~~~~l~~~~~G~~i~VDl~~~--------~I~--~~~g-~~~f~i---~~~~k~~l~~G 187 (213)
T 2hcu_A 124 IHYNNDLNNGILPIIQPKE-VRDKLAKLKPTDEVTVNLFEQ--------KIY--SPVG-DFSFDI---DGEWKHKLLNG 187 (213)
T ss_dssp HHHHHHHTTTCEEEECCHH-HHHHHHTSCTTCEEEEETTTT--------EEE--ETTE-EEECCC---CHHHHHHHHTT
T ss_pred HHHHHHHHcCCCcEEeCHH-HHHHHhccCCCCEEEEECCCC--------EEE--ECCc-eEEEeC---CHHHHHHHHcC
Confidence 9999999999999999753 35555 225678999999874 333 3556 677663 78999999988
No 6
>1v7l_A 3-isopropylmalate dehydratase small subunit; beta barrel, lyase; 1.98A {Pyrococcus horikoshii} SCOP: c.8.2.1
Probab=100.00 E-value=4.1e-39 Score=316.40 Aligned_cols=152 Identities=32% Similarity=0.524 Sum_probs=123.3
Q ss_pred EeecCCCCCcCccccCCCCCCCChHhhHHHHcCCCcccccccccCCCChhhhccccccchhhhhhhcCCCCCCcccccCC
Q 003797 569 LLNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGEVGPKTVHVPT 648 (795)
Q Consensus 569 L~~~gd~itTD~I~PAG~i~~~s~a~~~L~~~g~~~~~~n~yg~rr~n~evm~rg~F~n~r~~n~~~~~~~g~~t~~~p~ 648 (795)
++++|||||||||+| ++||+ |.|.+.+.+++|.+++ |
T Consensus 7 ~~~~~dnidTD~IiP----------a~~l~---------------~~~~~~l~~~~f~~~~-----------------p- 43 (163)
T 1v7l_A 7 VWKFGDDISTDEITP----------GRYNL---------------TKDPKELAKIAFIEVR-----------------P- 43 (163)
T ss_dssp EEECCSCCBHHHHSC----------TTSCC---------------CSCHHHHHHHTTTTTC-----------------T-
T ss_pred EEEcCCCCChhccch----------HHHhC---------------CCCHHHHHHHhCCccC-----------------c-
Confidence 679999999999999 47886 2355666777887754 1
Q ss_pred CccccccchHHHHHHcCCCcEEEeCCccCCCCchhhhhhchhhcCeeEEEecchhHHhhhhhccCccccccccCccchhh
Q 003797 649 GEKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKAGEDADS 728 (795)
Q Consensus 649 ~~~~~v~~~A~~y~~~~~~~iiVaG~NfG~GSSRE~Aa~a~~~lGv~aVIA~SFarI~~~Nlin~Gilpl~~~~~~~~~~ 728 (795)
+++.+++. ++|||||+|||||||||||||+++++||+||||+||+||||+||+|||||||+|+ ++.
T Consensus 44 -------~f~~~~~~---g~iivag~nfG~GSSREhAa~a~~~~Gi~aVIA~SFarIf~~N~in~Gllpl~~~----~~~ 109 (163)
T 1v7l_A 44 -------DFARNVRP---GDVVVAGKNFGIGSSRESAALALKALGIAGVIAESFGRIFYRNAINIGIPLLLGK----TEG 109 (163)
T ss_dssp -------THHHHCCT---TCEEECCSSBTBSCCCTHHHHHHHHHTCCEEEESCBCHHHHHHHHHHTCCEEESC----CTT
T ss_pred -------chHHhCCC---CCEEEecCcCCCCCCHHHHHHHHHHhCCCEEEEchHHHHHHhhHHHCCCceEEec----HHH
Confidence 23344443 5799999999999999999999999999999999999999999999999999996 343
Q ss_pred ccCCCCeEEEEecCCccccCCCCceEEEEcCCCeE-EEEEecCCCHHHHHHHHhcChHHHHHHHhh
Q 003797 729 LGLTGHERFSIDLPSKISEIRPGQDVTVTTDSGKS-FTCTVRFDTEVELAYFDHGGILPFVIRNLI 793 (795)
Q Consensus 729 l~~~~~~~~~idl~~~~~~~~~g~~v~v~~~~g~~-~~~~~~~~t~~e~~~~~aGGll~~v~~~~~ 793 (795)
+.++++++||+..+ +| + +|++ +.+. ..++.+++++++||+|||+++++.
T Consensus 110 --l~~gd~i~idl~~~--------~v--~--~g~~~~~~~--~~~~~~~~~l~aGGll~~~~~~~~ 159 (163)
T 1v7l_A 110 --LKDGDLVTVNWETG--------EV--R--KGDEILMFE--PLEDFLLEIVREGGILEYIRRRGD 159 (163)
T ss_dssp --CCTTCEEEEETTTT--------EE--E--ETTEEEECE--ECCHHHHHHHHTTSHHHHHHHSCC
T ss_pred --cCCCcEEEEEccCC--------EE--E--CCcEEEEEE--cCCHHHHHHHHcCCHHHHHHHHHh
Confidence 46788999997753 23 3 5555 6653 248999999999999999998753
No 7
>3vba_A Isopropylmalate/citramalate isomerase small subun; lyase, LEUD, cytosol; 2.00A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=4.4e-38 Score=311.46 Aligned_cols=160 Identities=27% Similarity=0.510 Sum_probs=127.9
Q ss_pred cceEEeecCCCCCcCccccCCCCCCCChHhhHHHHcCCCcccccccccCCCChhhhccccccchhhhhhhcCCCCCCccc
Q 003797 565 DAYCLLNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGEVGPKTV 644 (795)
Q Consensus 565 ~~~vL~~~gd~itTD~I~PAG~i~~~s~a~~~L~~~g~~~~~~n~yg~rr~n~evm~rg~F~n~r~~n~~~~~~~g~~t~ 644 (795)
..+++ ++|||||||+|+| ++||+. .|.+.+.++.|.++|
T Consensus 6 ~g~v~-~~gdnIdTD~IiP----------a~~l~~---------------~~~~~l~~~~f~~~~--------------- 44 (176)
T 3vba_A 6 KGRVW-KFGNNVDTDAILP----------ARYLVY---------------TKPEELAQFVMTGAD--------------- 44 (176)
T ss_dssp EEEEE-ECCSSCBHHHHSC----------GGGTTC---------------CSHHHHGGGTTTTTC---------------
T ss_pred EEEEE-EeCCCcchhhcCc----------HHHhCc---------------CCHHHHHHhhCcCCC---------------
Confidence 44564 8899999999999 689863 244556777887764
Q ss_pred ccCCCccccccchHHHHHHcCCCcEEEeCCccCCCCchhhhhhchhhcCeeEEEecchhHHhhhhhccCccccccccCcc
Q 003797 645 HVPTGEKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKAGE 724 (795)
Q Consensus 645 ~~p~~~~~~v~~~A~~y~~~~~~~iiVaG~NfG~GSSRE~Aa~a~~~lGv~aVIA~SFarI~~~Nlin~Gilpl~~~~~~ 724 (795)
| +++.+|+. ++|||||+|||||||||||+|+++.+||+||||+||+|||++||+|+|+||++++ +
T Consensus 45 --p--------~F~~~~~~---g~IlVaG~NFG~GSSREhA~~al~~~Gi~aVIA~SFA~If~~N~in~Gl~~i~~~--~ 109 (176)
T 3vba_A 45 --P--------DFPKKVKP---GDIIVGGKNFGCGSSREHAPLGLKGAGISCVIAESFARIFYRNAINVGLPLIECK--G 109 (176)
T ss_dssp --T--------THHHHCCT---TCEEEECTTBTBSSCCTHHHHHHHHTTCCEEEESCBCHHHHHHHHHTTCCEEECT--T
T ss_pred --c--------cHHHhcCC---CCEEEeCCCccCCccHHHHHHHHHHhCCcEEEeccHHHHHHhhHHHcCCCeEEcc--h
Confidence 1 23456653 4799999999999999999999999999999999999999999999999999876 3
Q ss_pred chhhccCCCCeEEEEecCCccccCCCCceEEEEcCCCeEEEEEecCCCHHHHHHHHhcChHHHHHHHhh
Q 003797 725 DADSLGLTGHERFSIDLPSKISEIRPGQDVTVTTDSGKSFTCTVRFDTEVELAYFDHGGILPFVIRNLI 793 (795)
Q Consensus 725 ~~~~l~~~~~~~~~idl~~~~~~~~~g~~v~v~~~~g~~~~~~~~~~t~~e~~~~~aGGll~~v~~~~~ 793 (795)
+++. +..+++++||+.++ +|. +..+|+++.++. + ++.+++++++||++||++++..
T Consensus 110 ~~~~--~~~gd~i~idl~~~--------~v~-~~~~g~~~~~~~-l-~~~~~~ii~aGGli~~~k~~~~ 165 (176)
T 3vba_A 110 ISEK--VNEGDELEVNLETG--------EIK-NLTTGEVLKGQK-L-PEFMMEILEAGGLMPYLKKKMA 165 (176)
T ss_dssp HHHH--CCTTCEEEEETTTC--------EEE-ETTTCCEEECCC-C-CHHHHHHHHHTSHHHHHHHHHH
T ss_pred HHHh--cCCCCEEEEECCCC--------EEE-eCCCCeEEEEec-C-CHHHHHHHHcCCHHHHHHHhcc
Confidence 4555 45678999998763 222 234677887762 3 8999999999999999998864
No 8
>1l5j_A Aconitate hydratase 2; molecular recognition, RNA binding, citric acid cycle, heat- like domain, lyase; HET: TRA; 2.40A {Escherichia coli} SCOP: a.118.15.1 c.8.2.1 c.83.1.1
Probab=100.00 E-value=7.3e-40 Score=385.27 Aligned_cols=280 Identities=19% Similarity=0.252 Sum_probs=214.1
Q ss_pred CCCCCCCCc------cCCccccCHHHHHHHHHhCccccCCCCCCCccCCCCCee-ccccCCCChHHHH----HHhhc-cC
Q 003797 438 NFEGRVHPL------TRANYLASPPLVVAYALAGTVDIDFDKEPIGTTKDGKSV-YFKDIWPTTEEIA----EVVQS-SV 505 (795)
Q Consensus 438 NF~GR~g~~------~~~~yLaSP~~vaA~AlaG~I~~d~~~~plg~~~~G~~v-~l~di~P~~~ei~----~~~~~-~~ 505 (795)
=|.+|+.|. .++.||+|| |.+++..+.|+++..+++||+...|..| +|.|+| +.+|++ +.++. .+
T Consensus 48 ~~~~rv~pg~~~aa~vKA~fL~~i--~~~~~~~~~i~~~~a~~lLg~m~gG~nv~~L~d~~-~~~~~a~~a~~~l~~~~l 124 (865)
T 1l5j_A 48 LLTNRVPPGVDEAAYVKAGFLAAI--AKGEAKSPLLTPEKAIELLGTMQGGYNIHPLIDAL-DDAKLAPIAAKALSHTLL 124 (865)
T ss_dssp HHHHSSCCTTCHHHHHHHHHHHHH--HTTSSCBTTBCHHHHHHHHTTSCSSTTHHHHHHGG-GCTTTHHHHHHHHHTCCT
T ss_pred HHHcCCCCCCChHHHHHHHHHHHH--HhCcccCCccCHHHHHHhcccCCCCCchHHHHHHh-CchhhHHHHHHHHHhhhc
Confidence 478899888 778899999 6689999999999999999999999999 799999 545555 45544 55
Q ss_pred CccccccccccccCCCCCcccccCCCCCccccCCCCcccCCCCCCCcCCCCCCCCCCcccceEEeecCCCCCcCccccCC
Q 003797 506 LPDMFKSTYEAITKGNPTWNQLSVPASKLYSWDPNSTYIHEPPYFKDMTMDPPGAHGVKDAYCLLNFGDSITTDHISPAG 585 (795)
Q Consensus 506 ~p~~~~~~~~~~~~~~~~w~~l~~~~~~~~~w~~~st~i~~pp~~~~~~~~~~~~~~i~~~~vL~~~gd~itTD~I~PAG 585 (795)
-.++|.+.|+....+|+.|+.+ ++.|...+-+.++|+.- ..+.+ + ++++|||||||||||
T Consensus 125 ~~d~f~~v~~~~~~gn~~a~~v------l~swa~ae~Ft~~p~~~----------~~i~g-~-v~~~~~nIdTD~IiP-- 184 (865)
T 1l5j_A 125 MFDNFYDVEEKAKAGNEYAKQV------MQSWADAEWFLNRPALA----------EKLTV-T-VFKVTGETNTDDLSP-- 184 (865)
T ss_dssp TTTHHHHHHHHHHTTCHHHHHH------HHHHHTTHHHHTSCCCC----------SCEEE-E-EEEEEEEEEHHHHSC--
T ss_pred cHHHHHHHHHHHhccCHHHHHH------HHhcccccccccCCCCC----------ceEEE-E-EEecCCCCchhccCc--
Confidence 6888999999999999999864 78999877555555542 23433 4 467899999999999
Q ss_pred CCCCCChHhhHHHHcCCCcccccccccCCCChhhhccccccchhhhhhhcCCCCCCcccccCCCccccccchHHHHHHcC
Q 003797 586 SIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGEVGPKTVHVPTGEKLSVFDAAMKYKSAG 665 (795)
Q Consensus 586 ~i~~~s~a~~~L~~~g~~~~~~n~yg~rr~n~evm~rg~F~n~r~~n~~~~~~~g~~t~~~p~~~~~~v~~~A~~y~~~~ 665 (795)
++||..+ .++. .+.++.|.++|. .+.+ .|+.+. .-+..+++++..|
T Consensus 185 --------a~~l~~~-~d~~-------------~~a~~lf~~~r~--~~~p--------~f~~~~--~~~~~i~~~~~~G 230 (865)
T 1l5j_A 185 --------APDAWSR-PDIP-------------LHALAMLKNARE--GIEP--------DQPGVV--GPIKQIEALQQKG 230 (865)
T ss_dssp --------GGGGGGT-TSHH-------------HHGGGTTCSCBT--TBCC--------SBTTTB--CSHHHHHHHHTTS
T ss_pred --------hhhhhcC-CCHH-------------HHHHHHhhcccc--CCCc--------cccccc--cchhhhhhhhcCC
Confidence 6899432 3333 346677776651 1111 111111 0123346677666
Q ss_pred CCcEEEeCCccCCCCchhhhhhch-------------hhcCeeEEEecchhHHhhhhhccCccccccccCccchhhccCC
Q 003797 666 HGTIILAGAEYGSGSSRDWAAKGP-------------MLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKAGEDADSLGLT 732 (795)
Q Consensus 666 ~~~iiVaG~NfG~GSSRE~Aa~a~-------------~~lGv~aVIA~SFarI~~~Nlin~Gilpl~~~~~~~~~~l~~~ 732 (795)
..|+|+|+|||||||||||+|++ +.+| ++|||+||+||||+|++|+|+|||+++ .+. +.
T Consensus 231 -~~IlvaG~NFGcGSSREhA~~al~~~~g~~~~~~p~k~~G-~~VIA~SFA~IF~~N~~n~Gllpi~~~----v~~--l~ 302 (865)
T 1l5j_A 231 -FPLAYVGDVVGTGSSRKSATNSVLWFMGDDIPHVPNKRGG-GLCLGGKIAPIFFNTMEDAGALPIEVD----VSN--LN 302 (865)
T ss_dssp -SCEEEEEEEEEESCCCTHHHHHHHHHHSEEETTEEEEEEC-CEEEEEEECHHHHHHHHHTTCEEEECC----CTT--CC
T ss_pred -CEEEEECCceecCcchHHHHHHHHHHhcCCCcCCchhhcC-CeEEechHHHHHHHHHHHcCCceEEec----Hhh--cC
Confidence 35999999999999999999999 9999 999999999999999999999999985 334 35
Q ss_pred CCeEEEEecCCccccCCCCceEEEEcCCCeE-EEEEecCCCHHHHHHHHhcChHHHHHHHhh
Q 003797 733 GHERFSIDLPSKISEIRPGQDVTVTTDSGKS-FTCTVRFDTEVELAYFDHGGILPFVIRNLI 793 (795)
Q Consensus 733 ~~~~~~idl~~~~~~~~~g~~v~v~~~~g~~-~~~~~~~~t~~e~~~~~aGGll~~v~~~~~ 793 (795)
.+++++||+.++ +|. +..+|++ +.+++ .++++++++++||++||+++|.+
T Consensus 303 ~Gd~i~Idl~~g--------~I~-~~~~g~~~~~f~~--~p~~~~~~v~AGGli~~i~~r~l 353 (865)
T 1l5j_A 303 MGDVIDVYPYKG--------EVR-NHETGELLATFEL--KTDVLIDEVRAGGRIPLIIGRGL 353 (865)
T ss_dssp TTCEEEEETTTT--------EEE-ETTTCCEEEECCC--SCTHHHHHHHHTSHHHHHHHHHH
T ss_pred CCCEEEEECCCC--------EEE-EcCCCeEEEEEEe--CCHHHHHHHHcCChhhhhhcchH
Confidence 678999998874 222 2356655 66654 57899999999999999999876
No 9
>3q3w_A 3-isopropylmalate dehydratase small subunit; structural genomics, center for structural genomics of infec diseases, csgid, isomerase; HET: MSE; 1.89A {Campylobacter jejuni}
Probab=100.00 E-value=4.1e-35 Score=295.34 Aligned_cols=164 Identities=23% Similarity=0.370 Sum_probs=125.1
Q ss_pred ccceEEeecCCCCCcCccccCCCCCCCChHhhHHHHcCCCcccccccccCCCChhhhccccccchhhhhhhcCCCCCCcc
Q 003797 564 KDAYCLLNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGEVGPKT 643 (795)
Q Consensus 564 ~~~~vL~~~gd~itTD~I~PAG~i~~~s~a~~~L~~~g~~~~~~n~yg~rr~n~evm~rg~F~n~r~~n~~~~~~~g~~t 643 (795)
...+++.+-+||||||+|+| ++||+. +++.+| .++.|.++|+.. .|.+.+
T Consensus 10 ~~G~a~~l~~dnIDTD~IIP----------~~fL~~--~~~~~l-------------g~~~f~~~R~~~---~g~~~~-- 59 (203)
T 3q3w_A 10 HKGIACPLEYANIDTDQIIP----------KQFLLA--VSKQGF-------------GKHLFHDLRYLD---DKESVL-- 59 (203)
T ss_dssp EEEEEEEECCSSCBHHHHSC----------GGGCBS--SCSSCS-------------GGGTTHHHHBSS---SSSCSB--
T ss_pred EEEEEEECCCcccChhhcch----------HHHcCc--CCHHHH-------------HHhhhhhhhccc---cCCCCC--
Confidence 34566666679999999999 799974 555555 577899999742 222110
Q ss_pred cccCCCccccccchHHHHHHcCCCcEEEeCCccCCCCchhhhhhchhhcCeeEEEecchhHHhhhhhccCccccccccCc
Q 003797 644 VHVPTGEKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKAG 723 (795)
Q Consensus 644 ~~~p~~~~~~v~~~A~~y~~~~~~~iiVaG~NfG~GSSRE~Aa~a~~~lGv~aVIA~SFarI~~~Nlin~Gilpl~~~~~ 723 (795)
.+.|+.++ ++|+. ++|||||+|||||||||||+|+++.+||+||||+||+|||++||+|+|||||++++.
T Consensus 60 ------~pdF~~n~-~~~~~---~~IlVaG~NFGcGSSREhA~~Al~~~Gi~aVIA~SFa~IF~~N~~n~Gll~i~~~~~ 129 (203)
T 3q3w_A 60 ------NMDFNLNK-KEYQN---SSILVSFENFGSGSSREHAPWALVDYGIRAIIAPSFADIFKNNALGNGLLTIELAKD 129 (203)
T ss_dssp ------CTTSGGGS-GGGTT---EEEEEECSSBTBSSCCTHHHHHHHHHTCCEEEESCBCHHHHHHHHHTTCEEEECCHH
T ss_pred ------CCChhhcc-cccCC---CCEEEeCCCCCCCCcHHHHHHHHHHcCceEEEECcHHHHHHHHHHhCCCCeEEeCHH
Confidence 11245554 45654 589999999999999999999999999999999999999999999999999999764
Q ss_pred cchhhcc----CCCCeEEEEecCCccccCCCCceEEEEcCCCeEEEEEecCCCHHHHHHHHhc
Q 003797 724 EDADSLG----LTGHERFSIDLPSKISEIRPGQDVTVTTDSGKSFTCTVRFDTEVELAYFDHG 782 (795)
Q Consensus 724 ~~~~~l~----~~~~~~~~idl~~~~~~~~~g~~v~v~~~~g~~~~~~~~~~t~~e~~~~~aG 782 (795)
..+.|. ...+++++|||+++ +|+ . +|+++.+.+ +++.++.|.+|
T Consensus 130 -~~~~l~~~~~~~~g~~i~VDL~~~--------~i~--~-~g~~~~f~i---~~~~r~~Ll~G 177 (203)
T 3q3w_A 130 -EVLEIVDELKKSQDKNIEISLLEK--------RVF--F-KDKIFSFDL---DDFHRICLLEG 177 (203)
T ss_dssp -HHHHHHHHHHHCSCCEEEEETTTT--------EEE--E-TTEEEECCC---CHHHHHHHHHT
T ss_pred -HHHHHHHHhhcCCCCEEEEECCCC--------EEE--E-CCEEEEEEe---CHHHHHHHHcC
Confidence 244441 15678999999874 333 2 567777764 78889998887
No 10
>3h5j_A 3-isopropylmalate dehydratase small subunit; leucine biosynthesis, isopropylmalate isomerase, LEUD, amino-acid biosynthesis; 1.20A {Mycobacterium tuberculosis} PDB: 3h5h_A 3h5e_A
Probab=100.00 E-value=4.4e-34 Score=280.64 Aligned_cols=157 Identities=24% Similarity=0.361 Sum_probs=121.2
Q ss_pred cccceEEeecCCCCCcCccccCCCCCCCChHhhHHHHcCCCcccccccccCCCChhhhccccccchhhhhhhcCCCCCCc
Q 003797 563 VKDAYCLLNFGDSITTDHISPAGSIHKDSPTAKYLLERGVERRDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGEVGPK 642 (795)
Q Consensus 563 i~~~~vL~~~gd~itTD~I~PAG~i~~~s~a~~~L~~~g~~~~~~n~yg~rr~n~evm~rg~F~n~r~~n~~~~~~~g~~ 642 (795)
....+++.+.|||||||+|+| ++||+. +++.+ |.+++|.++|.. |
T Consensus 9 ~~~G~~~~l~~dnIdTD~IiP----------a~~L~~--~~~~~-------------l~~~~f~~~R~~---------p- 53 (171)
T 3h5j_A 9 THSGIGVPLRRSNVDTDQIIP----------AVFLKR--VTRTG-------------FEDGLFAGWRSD---------P- 53 (171)
T ss_dssp EEEEEEEEECCCSCCHHHHSC----------GGGTTC--CSCSC-------------CGGGTTTTGGGS---------T-
T ss_pred EEEEEEEEccCCccCcccCCc----------hhhcCC--CCHHH-------------HHHHhhccCcCC---------c-
Confidence 445678888899999999999 689984 44444 467889988721 1
Q ss_pred ccccCCCccccccchHHHHHHcCCCcEEEeCCccCCCCchhhhhhchhhcCeeEEEecchhHHhhhhhccCccccccccC
Q 003797 643 TVHVPTGEKLSVFDAAMKYKSAGHGTIILAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKA 722 (795)
Q Consensus 643 t~~~p~~~~~~v~~~A~~y~~~~~~~iiVaG~NfG~GSSRE~Aa~a~~~lGv~aVIA~SFarI~~~Nlin~Gilpl~~~~ 722 (795)
.|+.++ ++|+. ++|||||+|||||||||||+|+++.+||++|||+||+|||++||+|+|+|||++++
T Consensus 54 ---------~F~~~~-~~~~~---~~IlVaG~NFGcGSSREhA~~al~~~Gi~~VIA~Sfa~If~~N~~n~Gllpi~~~~ 120 (171)
T 3h5j_A 54 ---------AFVLNL-SPFDR---GSVLVAGPDFGTGSSREHAVWALMDYGFRVVISSRFGDIFRGNAGKAGLLAAEVAQ 120 (171)
T ss_dssp ---------TSGGGS-TTGGG---CCEEEECSSBTCSSCCHHHHHHHHHHTCCEEEESSBCHHHHHHHHHHTCEEEECCH
T ss_pred ---------Cccccc-cccCC---CcEEEeCCCccCCcCHHHHHHHHHHhCCcEEEECcHHHHHHhHHHHcCCceEEeCH
Confidence 122232 35553 47999999999999999999999999999999999999999999999999999985
Q ss_pred ccchhhc----cCCCCeEEEEecCCccccCCCCceEEEEcCCCeEEEEEecCCCHHHHHHHHhc
Q 003797 723 GEDADSL----GLTGHERFSIDLPSKISEIRPGQDVTVTTDSGKSFTCTVRFDTEVELAYFDHG 782 (795)
Q Consensus 723 ~~~~~~l----~~~~~~~~~idl~~~~~~~~~g~~v~v~~~~g~~~~~~~~~~t~~e~~~~~aG 782 (795)
. .++.| ....+++++||+.++ +| .. +|+++.+.+ .+..++.|.+|
T Consensus 121 ~-~~~~l~~~~~~~~g~~i~VDl~~~--------~i--~~-~g~~~~F~i---~~~~k~~ll~G 169 (171)
T 3h5j_A 121 D-DVELLWKLIEQSPGLEITANLQDR--------II--TA-ATVVLPFKI---DDHSAWRLLEG 169 (171)
T ss_dssp H-HHHHHHHHHHHSTTCEEEEETTTT--------EE--EE-TTEEEECBC---CHHHHHHHHHT
T ss_pred H-HHHHHHHHhhcCCCcEEEEECCCC--------EE--EE-CCEEEEEEE---CHHHHHHHHhC
Confidence 4 34444 115688999999874 33 32 566777765 67778877776
No 11
>2r4q_A Phosphotransferase system (PTS) fructose-specific iiabc component; fructose specific IIB subunit, PF structural genomics, PSI-2; HET: MSE; 1.60A {Bacillus subtilis subsp} SCOP: c.44.2.2
Probab=41.39 E-value=22 Score=32.24 Aligned_cols=33 Identities=33% Similarity=0.559 Sum_probs=26.0
Q ss_pred EEEeecCCCCCChHHHHHHHHHHHHHHhCCCccC
Q 003797 332 IAAITSCTNTSNPSVMLGAGLVAKKACELGLQVK 365 (795)
Q Consensus 332 ~a~IGSCTN~~~~dl~~aA~lLa~~A~~~G~kv~ 365 (795)
+++|++|.+|--.-. .||+.|-+.|.+.|.+++
T Consensus 5 ivaVTaCptGiAhTy-mAaeaL~~aA~~~G~~ik 37 (106)
T 2r4q_A 5 ILAVTACPTGIAHTF-MAADALKEKAKELGVEIK 37 (106)
T ss_dssp EEEEEECSCC--CHH-HHHHHHHHHHHHHTCCEE
T ss_pred EEEEecCCCcHHHHH-HHHHHHHHHHHHCCCeEE
Confidence 578999999977664 467889999999998877
No 12
>2r48_A Phosphotransferase system (PTS) mannose-specific iibca component; PTS system, fructose specific IIB PFAM02379, PSI-2, MCSG; 1.80A {Bacillus subtilis subsp} SCOP: c.44.2.2
Probab=39.89 E-value=22 Score=32.18 Aligned_cols=33 Identities=36% Similarity=0.505 Sum_probs=27.4
Q ss_pred EEEeecCCCCCChHHHHHHHHHHHHHHhCCCccC
Q 003797 332 IAAITSCTNTSNPSVMLGAGLVAKKACELGLQVK 365 (795)
Q Consensus 332 ~a~IGSCTN~~~~dl~~aA~lLa~~A~~~G~kv~ 365 (795)
+++|++|.+|--.- -.||+.|-+.|.+.|.+++
T Consensus 5 ivaVTaCptGiAhT-ymAaeaL~~aA~~~G~~ik 37 (106)
T 2r48_A 5 LLAITSCPNGIAHT-YMAAENLQKAADRLGVSIK 37 (106)
T ss_dssp EEEEEECSSCSHHH-HHHHHHHHHHHHHHTCEEE
T ss_pred EEEEecCCCcHHHH-HHHHHHHHHHHHHCCCeEE
Confidence 57899999997655 4577889999999998877
No 13
>2kyr_A Fructose-like phosphotransferase enzyme IIB compo; ALP protein, structural genomics, PSI-2; NMR {Escherichia coli}
Probab=31.70 E-value=30 Score=31.59 Aligned_cols=33 Identities=24% Similarity=0.405 Sum_probs=27.3
Q ss_pred EEEeecCCCCCChHHHHHHHHHHHHHHhCCCccC
Q 003797 332 IAAITSCTNTSNPSVMLGAGLVAKKACELGLQVK 365 (795)
Q Consensus 332 ~a~IGSCTN~~~~dl~~aA~lLa~~A~~~G~kv~ 365 (795)
++.|++|.+|--.-. .||+.|-+.|.+.|..++
T Consensus 8 IvaVTaCptGiAHTy-MAAeaL~~aA~~~G~~ik 40 (111)
T 2kyr_A 8 LIALCACPMGLAHTF-MAAQALEEAAVEAGYEVK 40 (111)
T ss_dssp EEEEEEESSCHHHHH-HHHHHHHHHHHHTSSEEE
T ss_pred EEEEEcCCCcHHHHH-HHHHHHHHHHHHCCCeEE
Confidence 578999999976654 577888899999998777
No 14
>2m1z_A LMO0427 protein; homolog PTS system IIB component, transferase; NMR {Listeria monocytogenes egd-e}
Probab=24.59 E-value=46 Score=30.11 Aligned_cols=33 Identities=27% Similarity=0.412 Sum_probs=27.0
Q ss_pred EEEeecCCCCCChHHHHHHHHHHHHHHhCCCccC
Q 003797 332 IAAITSCTNTSNPSVMLGAGLVAKKACELGLQVK 365 (795)
Q Consensus 332 ~a~IGSCTN~~~~dl~~aA~lLa~~A~~~G~kv~ 365 (795)
++.|++|.+|--... .||+.|-+.|.++|..++
T Consensus 5 ivaVtaCptGiAhTy-mAAeaLekaA~~~G~~ik 37 (106)
T 2m1z_A 5 IIAVTACATGVAHTY-MAAQALKKGAKKMGNLIK 37 (106)
T ss_dssp EEEEEECSSCHHHHH-HHHHHHHHHHHHHTCEEE
T ss_pred EEEEEECCCcHHHHH-HHHHHHHHHHHHCCCEEE
Confidence 578999999976664 467888899999998776
Done!