Query 003798
Match_columns 794
No_of_seqs 338 out of 2032
Neff 8.0
Searched_HMMs 46136
Date Thu Mar 28 12:14:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003798.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003798hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03159 cation/H(+) antiporte 100.0 2E-153 5E-158 1369.3 85.3 752 19-781 19-796 (832)
2 KOG1650 Predicted K+/H+-antipo 100.0 3E-126 6E-131 1118.2 58.6 747 24-781 3-766 (769)
3 PRK03562 glutathione-regulated 100.0 2.7E-46 5.8E-51 437.1 44.0 371 44-443 5-381 (621)
4 PRK10669 putative cation:proto 100.0 4.8E-46 1E-50 433.7 42.6 374 45-442 7-389 (558)
5 PRK03659 glutathione-regulated 100.0 1.7E-45 3.7E-50 429.8 43.2 371 44-443 5-378 (601)
6 COG0475 KefB Kef-type K+ trans 100.0 2.1E-44 4.7E-49 399.5 42.7 378 43-443 5-386 (397)
7 PRK05326 potassium/proton anti 100.0 1.4E-39 2.9E-44 379.2 36.3 381 42-442 4-388 (562)
8 TIGR00932 2a37 transporter, mo 100.0 3.1E-35 6.7E-40 313.1 31.1 270 54-343 2-273 (273)
9 PF00999 Na_H_Exchanger: Sodiu 100.0 3.8E-39 8.2E-44 360.0 -4.1 371 52-441 4-378 (380)
10 COG4651 RosB Kef-type K+ trans 100.0 9.2E-32 2E-36 269.8 28.6 370 47-441 9-387 (408)
11 TIGR00844 c_cpa1 na(+)/h(+) an 100.0 4.3E-27 9.2E-32 271.0 39.1 370 31-413 2-386 (810)
12 TIGR00831 a_cpa1 Na+/H+ antipo 100.0 4.4E-27 9.6E-32 270.6 35.2 368 51-441 5-408 (525)
13 COG0025 NhaP NhaP-type Na+/H+ 99.9 8E-24 1.7E-28 237.1 37.4 378 44-442 6-407 (429)
14 COG3263 NhaP-type Na+/H+ and K 99.9 8.3E-23 1.8E-27 215.2 27.7 370 42-434 5-378 (574)
15 TIGR00840 b_cpa1 sodium/hydrog 99.9 1.6E-22 3.5E-27 232.7 32.0 375 52-442 17-417 (559)
16 KOG1965 Sodium/hydrogen exchan 99.8 3E-17 6.5E-22 181.8 23.2 385 46-442 37-455 (575)
17 PRK14853 nhaA pH-dependent sod 99.7 2.5E-15 5.5E-20 164.2 32.9 272 104-410 62-363 (423)
18 KOG4505 Na+/H+ antiporter [Ino 99.7 1E-15 2.2E-20 156.6 23.3 346 50-409 20-382 (467)
19 TIGR00773 NhaA Na+/H+ antiport 99.5 1.7E-12 3.7E-17 139.5 24.8 271 104-410 52-344 (373)
20 PRK11175 universal stress prot 99.5 1E-12 2.2E-17 142.4 19.1 270 464-778 4-299 (305)
21 PRK14856 nhaA pH-dependent sod 99.2 2.6E-09 5.7E-14 116.9 23.7 269 104-410 68-398 (438)
22 KOG1966 Sodium/hydrogen exchan 99.2 1.8E-11 3.9E-16 135.4 6.4 363 54-442 52-449 (670)
23 PRK09560 nhaA pH-dependent sod 99.2 5.9E-09 1.3E-13 112.5 24.9 271 104-410 59-353 (389)
24 cd01988 Na_H_Antiporter_C The 99.1 3.4E-10 7.4E-15 106.2 11.9 130 465-614 1-131 (132)
25 PRK09561 nhaA pH-dependent sod 99.1 8.8E-09 1.9E-13 110.9 23.3 271 104-410 59-351 (388)
26 PRK14854 nhaA pH-dependent sod 99.1 2.1E-08 4.6E-13 107.6 22.9 271 104-410 56-348 (383)
27 PRK14855 nhaA pH-dependent sod 99.0 5.1E-08 1.1E-12 106.4 24.1 266 104-410 63-383 (423)
28 PF06965 Na_H_antiport_1: Na+/ 98.9 3.6E-09 7.9E-14 113.9 10.0 272 104-411 55-352 (378)
29 COG3004 NhaA Na+/H+ antiporter 98.8 9.3E-07 2E-11 91.5 23.5 263 113-411 71-355 (390)
30 cd01989 STK_N The N-terminal d 98.5 9.8E-07 2.1E-11 84.5 10.4 136 465-614 1-143 (146)
31 PRK15456 universal stress prot 98.4 1.8E-06 3.8E-11 82.4 10.6 134 464-614 3-141 (142)
32 PRK15005 universal stress prot 98.4 2.4E-06 5.2E-11 81.5 11.5 136 464-614 3-143 (144)
33 cd01989 STK_N The N-terminal d 98.3 8.7E-06 1.9E-10 77.9 13.1 130 635-779 1-145 (146)
34 PRK15118 universal stress glob 98.3 2.3E-06 5E-11 81.8 8.8 134 464-614 4-137 (144)
35 cd01987 USP_OKCHK USP domain i 98.3 4.6E-06 1E-10 77.4 10.2 121 465-614 1-123 (124)
36 PF00582 Usp: Universal stress 98.3 9.2E-07 2E-11 82.7 5.3 132 464-614 3-139 (140)
37 cd01988 Na_H_Antiporter_C The 98.3 1.2E-05 2.6E-10 75.2 12.8 129 635-778 1-132 (132)
38 PRK09982 universal stress prot 98.2 7.1E-06 1.5E-10 78.4 9.5 134 464-614 4-137 (142)
39 PF00582 Usp: Universal stress 98.1 1.7E-05 3.7E-10 74.0 10.8 129 634-778 3-140 (140)
40 PRK09982 universal stress prot 98.1 1.6E-05 3.5E-10 75.9 9.5 125 633-778 3-138 (142)
41 PRK15005 universal stress prot 98.1 4.8E-05 1E-09 72.5 12.2 127 634-778 3-144 (144)
42 PRK11175 universal stress prot 98.0 2.4E-05 5.3E-10 84.7 9.8 142 464-619 153-303 (305)
43 cd00293 USP_Like Usp: Universa 98.0 4.4E-05 9.6E-10 70.3 10.2 129 465-613 1-129 (130)
44 PF05684 DUF819: Protein of un 98.0 0.0072 1.6E-07 67.1 29.0 297 67-413 24-349 (378)
45 PRK10116 universal stress prot 98.0 4.4E-05 9.4E-10 72.6 9.8 135 464-615 4-138 (142)
46 PRK10116 universal stress prot 97.9 6.7E-05 1.5E-09 71.3 10.1 126 633-778 3-138 (142)
47 PRK15118 universal stress glob 97.9 6.3E-05 1.4E-09 71.8 9.6 127 633-780 3-140 (144)
48 PRK12460 2-keto-3-deoxyglucona 97.8 0.0032 6.9E-08 66.8 20.9 253 113-443 51-306 (312)
49 cd01987 USP_OKCHK USP domain i 97.8 0.00026 5.7E-09 65.5 11.2 123 635-777 1-123 (124)
50 PRK15456 universal stress prot 97.7 0.00029 6.3E-09 67.1 11.6 127 634-778 3-142 (142)
51 cd00293 USP_Like Usp: Universa 97.7 0.00062 1.3E-08 62.6 12.8 127 635-777 1-130 (130)
52 TIGR00698 conserved hypothetic 97.5 0.11 2.4E-06 56.6 28.5 89 63-159 26-115 (335)
53 PF03812 KdgT: 2-keto-3-deoxyg 97.5 0.03 6.4E-07 59.3 22.3 257 110-442 48-311 (314)
54 PRK12652 putative monovalent c 97.1 0.0041 8.9E-08 68.3 12.4 125 633-768 5-144 (357)
55 COG0385 Predicted Na+-dependen 97.1 0.26 5.7E-06 52.8 25.2 152 103-265 34-191 (319)
56 COG0589 UspA Universal stress 97.1 0.008 1.7E-07 57.2 12.4 137 464-614 6-150 (154)
57 COG3493 CitS Na+/citrate sympo 97.0 0.086 1.9E-06 56.7 20.3 287 96-415 94-413 (438)
58 PF03601 Cons_hypoth698: Conse 97.0 0.099 2.1E-06 56.3 20.9 87 64-160 22-110 (305)
59 TIGR00793 kdgT 2-keto-3-deoxyg 96.9 0.046 1E-06 57.5 16.5 258 113-442 51-311 (314)
60 COG0786 GltS Na+/glutamate sym 96.9 0.43 9.4E-06 52.1 24.2 122 283-407 231-360 (404)
61 PF03616 Glt_symporter: Sodium 96.8 0.61 1.3E-05 51.8 26.0 92 294-393 246-343 (368)
62 PF03390 2HCT: 2-hydroxycarbox 96.8 0.24 5.3E-06 54.9 22.2 283 96-415 77-394 (414)
63 PF13593 DUF4137: SBF-like CPA 96.7 0.43 9.3E-06 51.9 23.1 112 106-227 30-146 (313)
64 TIGR00832 acr3 arsenical-resis 96.5 0.9 1.9E-05 49.7 24.4 103 109-222 45-151 (328)
65 PRK03562 glutathione-regulated 96.4 0.093 2E-06 62.5 17.6 133 276-416 10-143 (621)
66 COG0798 ACR3 Arsenite efflux p 96.3 0.82 1.8E-05 49.1 21.5 180 71-265 20-202 (342)
67 TIGR00932 2a37 transporter, mo 96.2 0.16 3.5E-06 54.1 16.1 140 282-429 3-144 (273)
68 TIGR00210 gltS sodium--glutama 96.2 1.8 4E-05 48.4 24.8 93 294-391 244-339 (398)
69 PF03601 Cons_hypoth698: Conse 96.0 0.21 4.5E-06 53.9 15.9 130 278-411 5-139 (305)
70 PRK03659 glutathione-regulated 96.0 0.22 4.7E-06 59.3 17.6 115 276-396 10-125 (601)
71 PRK10669 putative cation:proto 96.0 0.24 5.2E-06 58.5 17.8 138 278-423 13-151 (558)
72 COG3180 AbrB Putative ammonia 96.0 3.2 7E-05 45.2 26.4 157 276-443 190-349 (352)
73 COG0475 KefB Kef-type K+ trans 95.9 0.29 6.2E-06 55.1 17.3 158 275-439 10-170 (397)
74 PRK05274 2-keto-3-deoxyglucona 95.9 0.5 1.1E-05 51.3 18.2 47 114-160 54-100 (326)
75 COG2855 Predicted membrane pro 95.8 0.1 2.3E-06 55.9 12.3 116 289-409 31-146 (334)
76 TIGR00783 ccs citrate carrier 95.8 0.5 1.1E-05 51.4 17.3 270 122-415 40-327 (347)
77 COG0589 UspA Universal stress 95.7 0.17 3.6E-06 48.0 12.5 131 633-780 5-153 (154)
78 PRK12652 putative monovalent c 95.6 0.057 1.2E-06 59.4 9.5 110 463-581 5-124 (357)
79 TIGR00841 bass bile acid trans 95.4 2.8 6E-05 45.0 21.7 53 106-159 7-63 (286)
80 PF03956 DUF340: Membrane prot 95.3 0.16 3.5E-06 50.8 10.9 130 72-225 2-136 (191)
81 PRK03818 putative transporter; 95.2 0.62 1.3E-05 54.7 17.0 126 47-192 9-141 (552)
82 PF06826 Asp-Al_Ex: Predicted 95.1 0.72 1.6E-05 45.2 14.6 113 64-193 19-136 (169)
83 PF01758 SBF: Sodium Bile acid 95.1 1.4 3.1E-05 44.0 17.2 107 111-228 2-112 (187)
84 PRK05326 potassium/proton anti 95.1 0.3 6.6E-06 57.7 14.2 118 278-400 13-133 (562)
85 PF05145 AmoA: Putative ammoni 94.9 3.5 7.6E-05 44.9 20.7 128 276-411 157-286 (318)
86 TIGR00698 conserved hypothetic 94.7 0.82 1.8E-05 49.9 15.3 127 279-410 10-144 (335)
87 COG2855 Predicted membrane pro 94.7 7.6 0.00017 42.0 24.3 101 63-181 32-133 (334)
88 PLN03159 cation/H(+) antiporte 94.2 1.2 2.5E-05 55.1 16.9 109 630-738 455-581 (832)
89 TIGR03802 Asp_Ala_antiprt aspa 93.7 0.54 1.2E-05 55.3 12.0 93 52-160 18-114 (562)
90 TIGR00844 c_cpa1 na(+)/h(+) an 93.3 1.2 2.6E-05 53.6 13.9 71 326-400 74-146 (810)
91 TIGR01625 YidE_YbjL_dupl AspT/ 93.2 0.45 9.7E-06 45.9 8.6 111 69-194 22-138 (154)
92 TIGR03802 Asp_Ala_antiprt aspa 92.7 0.97 2.1E-05 53.2 12.3 114 65-193 412-530 (562)
93 PRK04972 putative transporter; 92.4 1.8 4E-05 50.8 14.0 118 51-192 19-140 (558)
94 PRK10490 sensor protein KdpD; 91.7 1.2 2.5E-05 55.8 11.9 123 461-614 248-372 (895)
95 TIGR00831 a_cpa1 Na+/H+ antipo 91.2 1.4 3E-05 51.6 11.2 116 280-402 7-124 (525)
96 PRK10490 sensor protein KdpD; 89.7 1.6 3.4E-05 54.6 10.6 124 633-778 250-373 (895)
97 TIGR03082 Gneg_AbrB_dup membra 89.3 5.5 0.00012 38.6 11.8 121 280-408 4-126 (156)
98 TIGR00930 2a30 K-Cl cotranspor 89.0 74 0.0016 40.2 43.0 128 463-614 575-707 (953)
99 PF03977 OAD_beta: Na+-transpo 88.6 1.1 2.3E-05 48.0 6.6 113 325-445 66-178 (360)
100 TIGR03136 malonate_biotin Na+- 88.5 6.2 0.00013 42.9 12.2 115 324-446 101-216 (399)
101 PF02040 ArsB: Arsenical pump 88.4 50 0.0011 37.5 22.0 37 184-220 117-153 (423)
102 TIGR00210 gltS sodium--glutama 87.4 15 0.00032 41.3 15.2 169 46-224 221-394 (398)
103 PRK12460 2-keto-3-deoxyglucona 87.1 5.1 0.00011 43.0 10.7 76 71-159 169-244 (312)
104 TIGR03082 Gneg_AbrB_dup membra 86.9 3.7 8.1E-05 39.7 9.0 96 52-161 3-100 (156)
105 TIGR00808 malonate_madM malona 85.9 9.4 0.0002 38.0 10.8 110 46-162 18-134 (254)
106 COG2985 Predicted permease [Ge 85.7 3.8 8.3E-05 46.0 9.1 107 110-224 62-176 (544)
107 TIGR00946 2a69 he Auxin Efflux 85.6 16 0.00034 39.8 14.2 136 66-223 180-316 (321)
108 COG1346 LrgB Putative effector 84.7 45 0.00097 34.1 15.4 111 315-440 61-171 (230)
109 PRK04972 putative transporter; 83.1 10 0.00023 44.6 12.0 112 67-193 409-525 (558)
110 PF03547 Mem_trans: Membrane t 82.1 8.8 0.00019 42.9 10.6 135 298-442 9-146 (385)
111 PRK04288 antiholin-like protei 81.5 63 0.0014 33.4 15.3 111 315-440 64-174 (232)
112 KOG2310 DNA repair exonuclease 81.2 2.6 5.6E-05 47.7 5.6 131 559-694 41-196 (646)
113 PRK03818 putative transporter; 80.6 38 0.00081 40.0 15.3 105 71-190 403-513 (552)
114 COG2205 KdpD Osmosensitive K+ 80.3 10 0.00022 45.6 10.3 124 461-613 246-371 (890)
115 COG0025 NhaP NhaP-type Na+/H+ 80.2 8.3 0.00018 43.9 9.5 123 277-404 12-138 (429)
116 COG4651 RosB Kef-type K+ trans 80.2 9.8 0.00021 40.3 9.0 130 276-417 11-145 (408)
117 COG3329 Predicted permease [Ge 80.1 37 0.00081 36.1 13.1 129 287-423 6-139 (372)
118 PF00999 Na_H_Exchanger: Sodiu 79.6 0.69 1.5E-05 51.6 0.6 113 281-399 6-124 (380)
119 PF03956 DUF340: Membrane prot 79.5 9.2 0.0002 38.4 8.4 50 357-406 57-106 (191)
120 COG0786 GltS Na+/glutamate sym 77.7 37 0.00079 37.6 12.8 112 44-162 222-336 (404)
121 COG2205 KdpD Osmosensitive K+ 77.5 14 0.0003 44.5 10.2 126 633-778 248-373 (890)
122 PF03616 Glt_symporter: Sodium 77.5 21 0.00044 39.8 11.4 109 47-162 224-335 (368)
123 COG5505 Predicted integral mem 75.9 1.2E+02 0.0025 32.5 24.3 91 327-428 275-365 (384)
124 PF01012 ETF: Electron transfe 75.7 10 0.00023 36.7 7.6 84 643-737 14-100 (164)
125 PRK03359 putative electron tra 75.4 6.9 0.00015 41.1 6.5 111 640-762 32-149 (256)
126 cd01984 AANH_like Adenine nucl 75.1 7.6 0.00017 33.0 5.8 34 636-670 1-34 (86)
127 PRK09903 putative transporter 74.6 51 0.0011 35.7 13.4 109 66-194 171-280 (314)
128 TIGR02432 lysidine_TilS_N tRNA 73.8 23 0.00049 35.1 9.7 37 635-671 1-37 (189)
129 PRK12342 hypothetical protein; 73.0 8.9 0.00019 40.3 6.6 33 639-672 30-62 (254)
130 COG2431 Predicted membrane pro 72.8 48 0.001 34.8 11.6 77 70-159 108-188 (297)
131 COG3263 NhaP-type Na+/H+ and K 72.5 43 0.00092 37.6 11.7 111 288-402 24-136 (574)
132 cd01984 AANH_like Adenine nucl 71.5 4.8 0.0001 34.2 3.6 47 557-611 35-83 (86)
133 PF05145 AmoA: Putative ammoni 71.5 35 0.00076 37.2 11.1 100 47-160 155-256 (318)
134 TIGR01109 Na_pump_decarbB sodi 71.2 16 0.00035 39.2 7.9 174 278-459 4-193 (354)
135 PRK15475 oxaloacetate decarbox 69.4 7.6 0.00017 42.1 5.1 112 325-444 131-248 (433)
136 TIGR02039 CysD sulfate adenyly 69.1 15 0.00032 39.5 7.4 38 635-672 21-58 (294)
137 PRK10711 hypothetical protein; 69.1 1.4E+02 0.0031 30.8 14.1 111 315-440 59-169 (231)
138 PRK15477 oxaloacetate decarbox 68.8 7.9 0.00017 42.0 5.1 112 325-444 131-248 (433)
139 PRK15476 oxaloacetate decarbox 68.8 7.9 0.00017 42.0 5.1 112 325-444 131-248 (433)
140 PF01171 ATP_bind_3: PP-loop f 68.0 12 0.00026 37.1 6.1 57 635-696 1-57 (182)
141 COG1346 LrgB Putative effector 67.5 1.5E+02 0.0033 30.4 14.2 119 58-196 20-144 (230)
142 KOG0573 Asparagine synthase [A 65.0 53 0.0011 36.9 10.5 83 634-718 251-335 (520)
143 TIGR00659 conserved hypothetic 64.1 1.8E+02 0.0039 30.0 15.3 110 316-440 59-168 (226)
144 COG0679 Predicted permeases [G 63.4 2.2E+02 0.0048 30.8 29.6 136 295-438 167-304 (311)
145 TIGR00783 ccs citrate carrier 63.0 77 0.0017 34.8 11.4 95 60-161 195-293 (347)
146 PRK05253 sulfate adenylyltrans 61.1 29 0.00062 37.5 7.8 39 634-672 28-66 (301)
147 cd01992 PP-ATPase N-terminal d 60.7 49 0.0011 32.5 9.0 57 635-696 1-57 (185)
148 PF04172 LrgB: LrgB-like famil 58.0 2.2E+02 0.0049 29.1 13.8 111 315-440 48-158 (215)
149 COG1883 OadB Na+-transporting 57.2 1.7 3.7E-05 45.2 -2.2 108 326-446 82-194 (375)
150 PRK12563 sulfate adenylyltrans 54.8 28 0.00061 37.6 6.3 38 635-672 39-76 (312)
151 COG2985 Predicted permease [Ge 54.1 53 0.0012 37.3 8.4 110 70-194 397-510 (544)
152 PF13593 DUF4137: SBF-like CPA 54.0 1.2E+02 0.0026 33.0 11.2 93 297-393 6-98 (313)
153 TIGR01625 YidE_YbjL_dupl AspT/ 53.1 45 0.00098 32.2 6.9 94 298-393 24-121 (154)
154 COG3180 AbrB Putative ammonia 53.1 2.1E+02 0.0045 31.5 12.6 99 49-161 190-290 (352)
155 PF05982 DUF897: Domain of unk 51.9 1.5E+02 0.0032 32.3 11.0 50 112-162 212-264 (327)
156 COG0679 Predicted permeases [G 50.5 3.3E+02 0.0071 29.5 14.0 83 66-159 166-250 (311)
157 PRK01663 C4-dicarboxylate tran 50.3 3.1E+02 0.0068 31.2 14.2 37 125-161 66-102 (428)
158 PRK10660 tilS tRNA(Ile)-lysidi 50.1 1.1E+02 0.0024 34.9 10.6 59 634-697 16-75 (436)
159 COG3969 Predicted phosphoadeno 49.7 43 0.00092 36.3 6.5 55 634-695 28-83 (407)
160 COG2086 FixA Electron transfer 49.4 90 0.0019 32.9 8.9 112 639-763 32-149 (260)
161 PRK04125 murein hydrolase regu 48.9 2E+02 0.0044 27.3 10.3 105 43-157 7-115 (141)
162 PF05684 DUF819: Protein of un 48.2 1.4E+02 0.0031 33.3 10.9 97 321-424 51-151 (378)
163 PF03812 KdgT: 2-keto-3-deoxyg 47.9 79 0.0017 34.1 8.2 76 72-160 175-250 (314)
164 cd01993 Alpha_ANH_like_II This 43.6 63 0.0014 31.6 6.6 38 635-672 1-40 (185)
165 TIGR00793 kdgT 2-keto-3-deoxyg 43.6 1.9E+02 0.0042 31.0 10.2 76 72-160 175-250 (314)
166 TIGR00946 2a69 he Auxin Efflux 41.9 4.8E+02 0.01 28.2 25.8 136 295-440 181-319 (321)
167 PRK04125 murein hydrolase regu 41.3 2E+02 0.0044 27.3 9.0 42 331-375 69-112 (141)
168 PF01032 FecCD: FecCD transpor 40.8 4.1E+02 0.009 28.8 12.8 24 60-83 35-58 (311)
169 PF03652 UPF0081: Uncharacteri 40.5 72 0.0016 30.0 6.0 60 556-620 37-98 (135)
170 PF03547 Mem_trans: Membrane t 40.1 5.5E+02 0.012 28.3 21.1 87 296-385 244-335 (385)
171 COG1646 Predicted phosphate-bi 39.4 83 0.0018 32.4 6.5 61 545-615 15-77 (240)
172 COG3199 Predicted inorganic po 39.2 1.2E+02 0.0025 33.2 7.9 118 610-757 3-128 (355)
173 TIGR00840 b_cpa1 sodium/hydrog 37.7 1.8E+02 0.004 34.4 10.1 74 327-404 69-151 (559)
174 PRK09765 PTS system 2-O-a-mann 36.9 6.3E+02 0.014 30.4 14.6 24 240-263 419-442 (631)
175 COG4858 Uncharacterized membra 36.5 3.3E+02 0.0072 27.0 9.7 50 33-82 89-138 (226)
176 PF04172 LrgB: LrgB-like famil 35.7 5E+02 0.011 26.6 12.3 64 122-195 66-130 (215)
177 KOG2718 Na+-bile acid cotransp 33.7 3.3E+02 0.0072 30.3 10.6 32 111-142 117-148 (371)
178 PRK04288 antiholin-like protei 33.7 5.6E+02 0.012 26.5 14.5 42 119-160 79-120 (232)
179 PF03977 OAD_beta: Na+-transpo 33.0 6.9E+02 0.015 27.4 24.3 248 48-348 4-264 (360)
180 PF10136 SpecificRecomb: Site- 33.0 2.1E+02 0.0045 34.4 9.4 28 31-59 459-486 (643)
181 COG0037 MesJ tRNA(Ile)-lysidin 32.8 1.5E+02 0.0034 31.5 8.0 56 634-696 22-77 (298)
182 PF07905 PucR: Purine cataboli 31.3 3.5E+02 0.0076 24.7 9.0 84 494-581 23-110 (123)
183 PRK01821 hypothetical protein; 30.9 4.6E+02 0.0099 24.7 10.2 103 43-155 9-115 (133)
184 KOG1650 Predicted K+/H+-antipo 30.8 4.8E+02 0.01 32.2 12.4 65 110-182 313-377 (769)
185 PF03686 UPF0146: Uncharacteri 30.7 82 0.0018 29.3 4.5 35 547-581 72-106 (127)
186 PRK05274 2-keto-3-deoxyglucona 30.0 7.7E+02 0.017 27.0 13.1 86 60-158 162-250 (326)
187 PRK12933 secD preprotein trans 29.9 1E+03 0.022 28.4 15.6 57 136-195 464-522 (604)
188 COG4827 Predicted transporter 29.8 4.3E+02 0.0093 26.7 9.4 47 107-153 9-57 (239)
189 PRK01658 holin-like protein; V 29.0 4.7E+02 0.01 24.2 10.8 105 43-157 4-112 (122)
190 COG1597 LCB5 Sphingosine kinas 28.7 56 0.0012 35.3 3.7 55 703-759 35-89 (301)
191 PF01507 PAPS_reduct: Phosphoa 28.2 1.3E+02 0.0028 28.9 5.9 51 635-696 1-51 (174)
192 cd01713 PAPS_reductase This do 27.7 1.1E+02 0.0025 28.9 5.4 36 635-671 1-36 (173)
193 PF06181 DUF989: Protein of un 27.7 7.8E+02 0.017 26.3 12.9 41 327-370 229-269 (300)
194 COG1570 XseA Exonuclease VII, 27.5 1E+02 0.0023 34.8 5.5 52 688-739 152-205 (440)
195 PF02355 SecD_SecF: Protein ex 27.5 6.3E+02 0.014 25.2 16.1 26 239-264 164-189 (189)
196 COG3329 Predicted permease [Ge 27.3 8.2E+02 0.018 26.4 15.5 46 115-160 49-94 (372)
197 PF02601 Exonuc_VII_L: Exonucl 27.1 1E+02 0.0023 33.4 5.5 36 633-670 14-50 (319)
198 TIGR00832 acr3 arsenical-resis 26.6 8.7E+02 0.019 26.5 12.6 71 335-408 51-127 (328)
199 PRK00109 Holliday junction res 26.5 1.3E+02 0.0029 28.4 5.3 57 558-619 42-99 (138)
200 PRK10577 iron-hydroxamate tran 26.5 1.2E+03 0.026 28.2 17.4 24 62-85 392-415 (668)
201 PF01889 DUF63: Membrane prote 26.4 8.1E+02 0.017 26.1 16.7 45 33-82 18-69 (273)
202 cd01985 ETF The electron trans 26.0 3.6E+02 0.0078 26.3 8.7 26 643-669 18-43 (181)
203 PF08659 KR: KR domain; Inter 25.6 3.9E+02 0.0084 26.1 8.8 86 639-736 4-90 (181)
204 PF06939 DUF1286: Protein of u 25.5 1.3E+02 0.0028 27.2 4.6 57 28-84 54-110 (114)
205 PRK05812 secD preprotein trans 24.4 1.2E+03 0.025 27.3 13.8 27 136-162 357-383 (498)
206 PRK04148 hypothetical protein; 24.4 97 0.0021 29.2 3.9 33 549-581 81-113 (134)
207 COG3371 Predicted membrane pro 23.8 5E+02 0.011 25.8 8.6 63 65-139 73-135 (181)
208 KOG1965 Sodium/hydrogen exchan 23.2 2.5E+02 0.0055 32.9 7.6 74 327-403 102-181 (575)
209 COG3763 Uncharacterized protei 23.1 3.9E+02 0.0085 22.1 6.4 37 238-277 9-45 (71)
210 TIGR00400 mgtE Mg2+ transporte 22.7 6.8E+02 0.015 28.6 11.3 95 123-221 345-440 (449)
211 PRK01658 holin-like protein; V 22.4 6.2E+02 0.013 23.4 8.9 18 331-348 66-85 (122)
212 PF03600 CitMHS: Citrate trans 22.3 1E+03 0.022 25.8 15.5 18 184-201 117-134 (351)
213 PRK12737 gatY tagatose-bisphos 21.5 3.4E+02 0.0073 29.1 7.8 69 542-620 16-86 (284)
214 PF03390 2HCT: 2-hydroxycarbox 21.5 1.2E+03 0.026 26.4 13.8 97 59-161 261-360 (414)
215 cd04734 OYE_like_3_FMN Old yel 21.5 1E+03 0.022 26.1 11.9 128 588-739 185-320 (343)
216 TIGR00659 conserved hypothetic 21.1 9.2E+02 0.02 24.9 13.9 42 119-160 73-114 (226)
217 COG0421 SpeE Spermidine syntha 21.0 1.6E+02 0.0034 31.5 5.2 70 652-738 90-160 (282)
218 PRK00286 xseA exodeoxyribonucl 21.0 1.3E+02 0.0027 34.5 4.8 26 713-739 179-204 (438)
219 COG0175 CysH 3'-phosphoadenosi 20.9 3.1E+02 0.0068 28.9 7.4 33 635-671 41-73 (261)
220 COG3748 Predicted membrane pro 20.9 6.9E+02 0.015 27.1 9.5 55 312-370 212-266 (407)
221 PF13194 DUF4010: Domain of un 20.6 9.1E+02 0.02 24.6 15.7 26 282-307 138-164 (211)
222 PRK10696 tRNA 2-thiocytidine b 20.5 2.9E+02 0.0063 28.9 7.1 38 634-671 30-69 (258)
223 COG2431 Predicted membrane pro 20.3 1.1E+03 0.023 25.3 15.9 47 359-405 166-212 (297)
224 KOG1288 Amino acid transporter 20.3 9.3E+02 0.02 29.2 11.2 97 465-581 562-663 (945)
225 TIGR03869 F420-0_ABCperm propo 20.3 1.1E+03 0.025 25.6 16.1 57 62-119 48-104 (325)
226 PRK12857 fructose-1,6-bisphosp 20.0 3.7E+02 0.008 28.8 7.7 71 542-620 16-86 (284)
No 1
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=100.00 E-value=2.1e-153 Score=1369.26 Aligned_cols=752 Identities=37% Similarity=0.658 Sum_probs=689.2
Q ss_pred ccccccCCCCCccccCCCCCCccHHHHHHHHHHHHHHHHHHHHhhcccCCChhHHHHHHHHhhCccccCCchhhhhccCC
Q 003798 19 SRARSRRSHPLGIFFGESPLDSPFLLVLFEIVFIICTTSIIRFLLKPLKQPRVISEMIGGIIVGPSILGRNKKFAEAMLP 98 (794)
Q Consensus 19 ~~~~~~~~~~~g~~~g~~pl~~~l~~~l~~i~lil~~~~l~~~ll~rl~~P~ii~~IlaGiilGP~~lg~~~~~~~~lfp 98 (794)
|+ .+.+.+|+|+|+|+||++|++|++++|+++++++++++++++||+|||++++||++|+++||+++|.++.+.+.+||
T Consensus 19 c~-~~~~~~s~g~~~g~~pl~~~l~~~llql~lil~~a~l~~~ll~rl~~P~ivgeIlaGIlLGPs~lg~i~~~~~~~fp 97 (832)
T PLN03159 19 CY-APMMITTNGIWQGDNPLDFSLPLFILQLTLVVVTTRLLVFILKPFRQPRVISEILGGVILGPSVLGQSEVFANTIFP 97 (832)
T ss_pred cc-cCCCccCCcccccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHhcCHhhhCcChhhhhhcCC
Confidence 88 44467999999999999999999999999999999999999999999999999999999999999999888899999
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHhhccChhHHHhcCchhhHHHHHHHHHHHHHHHHHHHHhhccCCcchhhHHHHHHHHHH
Q 003798 99 DNSQLVVRSVGIMAFMYFMFIAGIKMDFTLLKRCGRKHVYIAVTGVIIPTATSAAVAFLTRKSMDPELAKVSSIGAITTS 178 (794)
Q Consensus 99 ~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~~~p~~l~~~~~~~l~~~~~~~~~~~~~~l~lg~~ 178 (794)
.++.+.+++++++|++|+||++|+|+|++.+||++|+++.+|+.++++|+++++++++++... .........++++|++
T Consensus 98 ~~~~~~l~~la~lGlillmFliGLE~Dl~~lr~~~k~a~~ia~~~~ilpf~lg~~~~~~l~~~-~~~~~~~~~~l~~g~a 176 (832)
T PLN03159 98 LRSVMVLETMANLGLLYFLFLVGVEMDISVIRRTGKKALAIAIAGMALPFCIGLAFSFIFHQV-SRNVHQGTFILFLGVA 176 (832)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHhhc-ccccchhHHHHHHHHH
Confidence 888889999999999999999999999999999999999999999999999999888877432 1111223567899999
Q ss_pred HhhccHHHHHHHHHhcCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 003798 179 LAVTSFPVLNPILKDLNLLSSEMGRMAIVTAVIGDAIGINIVIAFEAAKQGEGDSVDAVWYLISLVILLAFICIAVRRTM 258 (794)
Q Consensus 179 ls~Ts~~vv~~iL~el~l~~s~~g~l~ls~a~v~D~~~~ill~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~r~~~ 258 (794)
+|.||+|+++++|+|+|+++++.||+++++++++|+++|++++++.++...+......++.++..+++++++.+++||++
T Consensus 177 lS~Ts~pVv~riL~Elkll~s~~GrlaLsaavv~Dl~~~ilLav~~~l~~~~~~~~~~l~~~l~~~~f~~~~~~v~r~~~ 256 (832)
T PLN03159 177 LSVTAFPVLARILAEIKLINTELGRIAMSAALVNDMCAWILLALAIALAENDSTSLASLWVLLSSVAFVLFCFYVVRPGI 256 (832)
T ss_pred HHHhhHHHHHHHHHHcCcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998877655443324456777778888888999999999
Q ss_pred HHHHHhCCCCCcccchHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHh
Q 003798 259 LWIVHKTPVGKPVSQGYIVGILLGVLVMGFLTDMFGMAIANGPLWLGLVIPDGPPLGATLVERTETLIMEIFMPFAFAVV 338 (794)
Q Consensus 259 ~~i~~~~~~~~~~~e~~~~~il~~~l~~~~~ae~~G~~~~lgaflaGl~i~~~~~~~~~l~~kl~~~~~~~~~PlfF~~~ 338 (794)
.|+.+|++++++.++.++.+++++++++++++|.+|+|+++|||++|+++|+ +|+++++.+|++++++++|+|+||+++
T Consensus 257 ~~~~r~~~~~~~~~e~~v~~il~~vl~~a~lae~~Gl~~ilGAFlaGl~lp~-~~~~~~l~ekle~~~~~lflPlFFv~v 335 (832)
T PLN03159 257 WWIIRRTPEGETFSEFYICLILTGVMISGFITDAIGTHSVFGAFVFGLVIPN-GPLGVTLIEKLEDFVSGLLLPLFFAIS 335 (832)
T ss_pred HHHHHhCcCCCCcccchhHHHHHHHHHHHHHHHHhCccHHHHHHHHhhccCC-cchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999998888999999999999999999999999999999999999998 689999999999999999999999999
Q ss_pred cccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhHHHHHHHHHHhhhhccccCCch
Q 003798 339 GMYTDVYAMFEFGWSGLSPLFGMIVTGYISKLLGTLIPSLLCQMPFRDSLTLSLMMSLRGQVELLLYIHWIDKLIIGVPP 418 (794)
Q Consensus 339 G~~~dl~~l~~~~~~~~~~~~~i~~~~~l~K~~~~~l~~~~~~~~~~e~~~lgl~m~~kG~~~l~~~~~~~~~~ii~~~~ 418 (794)
|+++|+..+.. ...|..+++++++++++|+++++++++++|+|++|++.+|++||+||++++++++++++.|+++++.
T Consensus 336 Gl~idl~~l~~--~~~~~~~~~liv~a~~gK~~g~~l~a~~~g~~~~eal~lG~lm~~kG~~~Lii~~ig~~~gvi~~~~ 413 (832)
T PLN03159 336 GLKTNVTKIQG--PATWGLLVLVIIMASAGKIMGTIIIAFFYTMPFREGITLGFLMNTKGLVEMIVLNVGRDQEVLDDES 413 (832)
T ss_pred hheeeHHHhcC--chHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhcccHHHHHHHHHHHhcCccCchh
Confidence 99999988751 3356666777888899999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhHHHHHHhhcCCCCcccccccccccCCCCCCCceeEEEeccCCchHHHHHHHHhhCCCCCCCceEEE
Q 003798 419 FTLLVLSTVVITGIAGPLISFLYDPTRPYMVNKRRTIQHHPPDTELRLVVCVHEEESVAGLINLLEVSCPTVDSPFSIYS 498 (794)
Q Consensus 419 ~~~lv~~~ll~t~i~~plv~~l~~~~~~~~~~~~r~i~~~~~~~elriLv~v~~~~~~~~li~l~~~~~~~~~sp~~v~~ 498 (794)
|++++++++++|++++|++.++|+|+||+..|++|++|+.++++|+|+|+|+|+++|+++|++|++++++++++|+++|+
T Consensus 414 f~~lVl~avl~T~i~~Plv~~ly~p~rk~~~~~~r~i~~~~~~~elriL~cv~~~~~v~~li~Lle~s~~t~~sp~~vy~ 493 (832)
T PLN03159 414 FAVMVLVAVAMTALITPVVTVVYRPARRLVGYKRRTIQRSKHDAELRMLVCVHTPRNVPTIINLLEASHPTKRSPICIYV 493 (832)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhCHHhhhccccccccccCCCCCceeEEEEeccCCcHHHHHHHHHhcCCCCCCCceEEE
Confidence 99999999988999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeecCCCccccccccccCC--C---CCCCcchHHHHHHHHhhhhcCceEEEEeEEeccCCChhHHHHHHHHhcCCcE
Q 003798 499 LHLIELIGRGIPLLVDYENEEH--S---PEYTNDDAIHNALKLYSETRGELKFNAFTALAPMRSMYQNICELALDNKATL 573 (794)
Q Consensus 499 lhLvel~~r~~~~~~~~~~~~~--~---~~~~~~~~i~~af~~~~~~~~~v~v~~~~~vs~~~~m~~dI~~~A~~~~a~l 573 (794)
+||+|++||++|+++.|+.++. + ....++|+++++|++|++++++++++++|++||+++||+|||+.|+||++++
T Consensus 494 lhLveL~~r~~~~l~~h~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~~v~v~~~t~vs~~~~mh~dIc~~A~d~~~sl 573 (832)
T PLN03159 494 LHLVELTGRASAMLIVHNTRKSGRPALNRTQAQSDHIINAFENYEQHAGCVSVQPLTAISPYSTMHEDVCNLAEDKRVSL 573 (832)
T ss_pred EEEEeecCCCccceeeeecccccccccccccccccHHHHHHHHHHhhcCceEEEEEEEEeCcccHHHHHHHHHHhcCCCE
Confidence 9999999999999999986511 1 1335589999999999976458999999999999999999999999999999
Q ss_pred EEecCCCCCCCCCCCccccccc-hhHHHHHhhccCCCceEEEecCCCCCCCCcccCCCccceEEEEEecCCccHHHHHHH
Q 003798 574 IILPFHKEYPNNLEGTQILRRG-VQSVNIKVLSHAPCSVGVLVDKGNFRNPMHAAGGSMRRHHFVVLFLGGADAREALAY 652 (794)
Q Consensus 574 Iilp~h~~~~~d~~g~~~~~~~-~~~~n~~vl~~ApCsVgIlvdRg~~~~~~~~~~~~~~~~~I~v~f~GG~dDreAL~~ 652 (794)
||+||||+|+.| |++++.+. +|++|+|||++||||||||||||..... +.+.++..+||+++|+|||||||||+|
T Consensus 574 Iilpfhk~~~~d--g~~~~~~~~~r~~n~~VL~~ApCsVgIlVDRg~~~~~--~~~~~~~~~~v~~~F~GG~DDREALa~ 649 (832)
T PLN03159 574 IIIPFHKQQTVD--GGMEATNPAFRGVNQNVLANAPCSVGILVDRGLSGAT--RLASNQVSHHVAVLFFGGPDDREALAY 649 (832)
T ss_pred EEECCCCccCCC--CCccccCchHHHHHHHHHccCCCCEEEEEeCCCCccc--cccccccceeEEEEecCCcchHHHHHH
Confidence 999999999999 99888877 9999999999999999999999976422 123345578999999999999999999
Q ss_pred HHHHhcCCCeEEEEEEeeccCCCCC--------------------chhhhhhHHHHHHHHHhhcCCCCceEEEEEEecCh
Q 003798 653 ADRMVGNLDVSLTVIRFLSFNHEGD--------------------DEMEKKLDDGLVTWFWVKNESNERVRYREVVVRNG 712 (794)
Q Consensus 653 A~rma~~~~v~ltvl~~~~~~~~~~--------------------~~~~~~~d~~~l~~~~~~~~~~~~v~y~e~~v~~~ 712 (794)
|+|||+||++++||+||++.+...+ ++.|+++||++++|||.++..+++|.|.||+|+|+
T Consensus 650 a~rma~~p~v~lTVirf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~D~~~~~ef~~~~~~~~~v~y~E~~V~~~ 729 (832)
T PLN03159 650 AWRMSEHPGITLTVMRFIPGEDAAPTASQPASSPSDPRIPTVETDGKKERQLDEEYINEFRARNAGNESIVYTEKVVSNG 729 (832)
T ss_pred HHHHhcCCCeEEEEEEEEcccccccccccccccccccccccccccchhHHHHHHHHHHHHHHhcCCCCceEEEEEecCCH
Confidence 9999999999999999997533111 35688999999999999998889999999999999
Q ss_pred HHHHHHHHhhhccCcccEEEEecccCCCCccccccCCCCCCCccchhhhhhhccCCCCceeEEEEEeec
Q 003798 713 AETVASIQAVNDEAYCDLWIVGRYQGINGKLLEGLEAWSEDNELGVIGDYVASIDFGSTASVLVMQQQV 781 (794)
Q Consensus 713 ~~~~~~i~~~~~~~~~DL~iVGr~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~~~SvLvvqq~~ 781 (794)
+||+++||+++++ |||+||||+|+.+|++|+||+||+||||||+|||+|||+||++++||||||||+
T Consensus 730 ~e~~~~l~~~~~~--ydL~iVGr~~~~~~~~~~gL~~w~e~pELG~iGD~LaS~d~~~~~SVLVvQQ~~ 796 (832)
T PLN03159 730 EETVAAIRSMDSA--HDLFIVGRGQGMISPLTAGLTDWSECPELGAIGDLLASSDFAATVSVLVVQQYV 796 (832)
T ss_pred HHHHHHHHHhhcc--CcEEEEecCCCCCcchhccccccccCCccchhhhHHhcCCCCCceeEEEEEeec
Confidence 9999999999988 999999999988899999999999999999999999999999999999999997
No 2
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.8e-126 Score=1118.18 Aligned_cols=747 Identities=41% Similarity=0.687 Sum_probs=686.9
Q ss_pred cCCCCCccccCCCCCCccHHHHHHHHHHHHHHHHHHHHhhcccCCChhHHHHHHHHhhCccccCCchhhhhccCCCCcHH
Q 003798 24 RRSHPLGIFFGESPLDSPFLLVLFEIVFIICTTSIIRFLLKPLKQPRVISEMIGGIIVGPSILGRNKKFAEAMLPDNSQL 103 (794)
Q Consensus 24 ~~~~~~g~~~g~~pl~~~l~~~l~~i~lil~~~~l~~~ll~rl~~P~ii~~IlaGiilGP~~lg~~~~~~~~lfp~~~~~ 103 (794)
.+.++.|.|+|+||++|++|++++|+.+++++++++++++||+|||++++||++||++||+.+|+++.+.+.+||.++..
T Consensus 3 ~~~~~~g~~~~~~~~~~~lpl~~lq~~~i~~~~~~~~~~l~pl~qp~~~s~il~Gi~lgps~~g~~~~~~~~~f~~~s~~ 82 (769)
T KOG1650|consen 3 VKATSNGVFPGVNPLKYALPLLLLQIILIIVLSRLLHILLKPLGQPRVISEILAGIILGPSLLGRIPSYMNTIFPKSSMI 82 (769)
T ss_pred CccccCCcccCCCccccccHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHhcchHhhccChhhhhcccccchHH
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999988999
Q ss_pred HHHHHHHHHHHHHHHHHhhccChhHHHhcCchhhHHHHHHHHHHHHHHHHHHHHhhccCCcchh----hHHHHHHHHHHH
Q 003798 104 VVRSVGIMAFMYFMFIAGIKMDFTLLKRCGRKHVYIAVTGVIIPTATSAAVAFLTRKSMDPELA----KVSSIGAITTSL 179 (794)
Q Consensus 104 ~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~~~p~~l~~~~~~~l~~~~~~~~~----~~~~~l~lg~~l 179 (794)
.+++++.+|+.+++|+.|+|+|.+.++|++|++..+|+.++++|++.|.++...+......... ...+..++..++
T Consensus 83 ~l~~~~~lg~~~f~Fl~gl~~d~~~i~~~~kka~~I~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (769)
T KOG1650|consen 83 VLELLANLGFLFFLFLMGLEIDLRVIRRTGKKAIVIAIASVVLPFGLGFGLAFLLSDTKADKEDGALFLPFEILFILSAQ 162 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHhhccCceeEEEEEEEeehhhHhhhhhhhhccccccccccccccccHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999888877543321111 112678889999
Q ss_pred hhccHHHHHHHHHhcCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHHHHHHHHHHHHHH
Q 003798 180 AVTSFPVLNPILKDLNLLSSEMGRMAIVTAVIGDAIGINIVIAFEAAKQGEGD-SVDAVWYLISLVILLAFICIAVRRTM 258 (794)
Q Consensus 180 s~Ts~~vv~~iL~el~l~~s~~g~l~ls~a~v~D~~~~ill~v~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~v~r~~~ 258 (794)
+.||||+++++|.|+|++++++||+++++++++|+.+|.++++..+....... +....|.+...+++++++.++.||.+
T Consensus 163 s~tsfpv~~~iL~eLkll~se~Grla~saa~v~dv~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~p~~ 242 (769)
T KOG1650|consen 163 SITSFPVLARILAELKLLNSELGRLALSAAVVNDVAGWILLALALAFSSELKLSPLRSVWDLVLVIGFVLFLFFVVRPLM 242 (769)
T ss_pred hcchhHHHHHHHHHhhchhchhhhhhhhhhhhhhHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHheeeehhhhH
Confidence 99999999999999999999999999999999999999999888887765542 25567888889999999999999999
Q ss_pred HHHHHhCCCCCcccchHHHHHHHHHHHHHHHHHHhc-hhhhHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 003798 259 LWIVHKTPVGKPVSQGYIVGILLGVLVMGFLTDMFG-MAIANGPLWLGLVIPDGPPLGATLVERTETLIMEIFMPFAFAV 337 (794)
Q Consensus 259 ~~i~~~~~~~~~~~e~~~~~il~~~l~~~~~ae~~G-~~~~lgaflaGl~i~~~~~~~~~l~~kl~~~~~~~~~PlfF~~ 337 (794)
.|+.+|+|++++.++.++..++..++.++.+++.++ +|+++|||+.|+++|+++|+++.+.+|+|++.+++|+|+||+.
T Consensus 243 ~wi~kr~pe~~~~~~~~~~~~l~~vl~~~~~~~~~~~i~~~~Gaf~~Gl~iP~~~p~g~~L~ekle~~~~~~llPl~~~~ 322 (769)
T KOG1650|consen 243 KWIIKRTPEGKPVSDAYICVTLLGVLASAFLTDLIGGIHSIFGAFILGLAIPHGPPLGSALIEKLEDLVSGLLLPLYFAI 322 (769)
T ss_pred HHHhhcCCCCCccccceehhhHHHHHHHHHHHHHhccccccchhheEEEecCCCCchhHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999 8999999999999999999999999999999999999999999
Q ss_pred hcccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhHHHHHHHHHHhhhhccccCCc
Q 003798 338 VGMYTDVYAMFEFGWSGLSPLFGMIVTGYISKLLGTLIPSLLCQMPFRDSLTLSLMMSLRGQVELLLYIHWIDKLIIGVP 417 (794)
Q Consensus 338 ~G~~~dl~~l~~~~~~~~~~~~~i~~~~~l~K~~~~~l~~~~~~~~~~e~~~lgl~m~~kG~~~l~~~~~~~~~~ii~~~ 417 (794)
+|+++|+..+. . |......+...+++|++++..++.++|+|+||++.+|++|++||.+++..++.+.+.++++++
T Consensus 323 ~G~k~di~~i~---~--~~~~~~~i~~~~~~K~l~t~~~sl~~k~p~~~~l~l~~lm~~kgl~el~~~~~~~~~~~~~~~ 397 (769)
T KOG1650|consen 323 SGLKTDISRIN---K--WGALIRTILIFGAVKLLSTLGTSLYCKLPLRDSLALGLLMSTKGLVELIVLNTGLDRKILSDE 397 (769)
T ss_pred hccceeHHHHH---H--HHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHhhhHHHHHHHHHHhhcCCcccc
Confidence 99999999987 3 777788888999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhHHHHHHhhcCCCCcccccccccccCCCCCCCceeEEEeccCCchHHHHHHHHhhCCCCCCCceEE
Q 003798 418 PFTLLVLSTVVITGIAGPLISFLYDPTRPYMVNKRRTIQHHPPDTELRLVVCVHEEESVAGLINLLEVSCPTVDSPFSIY 497 (794)
Q Consensus 418 ~~~~lv~~~ll~t~i~~plv~~l~~~~~~~~~~~~r~i~~~~~~~elriLv~v~~~~~~~~li~l~~~~~~~~~sp~~v~ 497 (794)
.|++++++++++|.+++|+++.+|+|.+++..|++|++++.+++.++|++.|+|++++++++++++|++.+++++|.+++
T Consensus 398 ~f~~~vl~alv~t~I~~~~l~~~y~p~~~~~~y~~~~i~~~~~~~~Lril~cl~~~~~is~~i~~le~~~~~~~~p~~v~ 477 (769)
T KOG1650|consen 398 GFTVMVLMALVSTFITPPLLMFLYDPTRKYHGYKKRGIQHLKPNSELRILTCLHGPENISGIINLLELSSGSLESPLSVY 477 (769)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHhcchhhhcCceEeehhhhcCCCCceEEEEEecCCCcchHHHHHHHHcCCCCCCCccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988899999
Q ss_pred EEEEeeecCCCcccccccccc-C-CC-CCCCcchHHHHHHHHhhhhc-CceEEEEeEEeccCCChhHHHHHHHHhcCCcE
Q 003798 498 SLHLIELIGRGIPLLVDYENE-E-HS-PEYTNDDAIHNALKLYSETR-GELKFNAFTALAPMRSMYQNICELALDNKATL 573 (794)
Q Consensus 498 ~lhLvel~~r~~~~~~~~~~~-~-~~-~~~~~~~~i~~af~~~~~~~-~~v~v~~~~~vs~~~~m~~dI~~~A~~~~a~l 573 (794)
++|++||.+|+.|++++|+.+ + .+ .....++++.++|+.|++.+ ..+.++++|+++|+++||+|||.+|.++++++
T Consensus 478 ~lhlveL~~~~~~~li~h~~~~~~~~~~~s~~~~~i~~aF~~f~~~~~~~v~v~~~Ta~s~~~~m~edic~la~~~~~~l 557 (769)
T KOG1650|consen 478 ALHLVELVGRATPLLISHKLRKNGRVESRSSSSDQINVAFEAFEKLSQEGVMVRTFTALSPEKLMHEDICTLALDKGVSL 557 (769)
T ss_pred eeeeeecccccchhhhhhhhccccccccccccchhhHHHHHHHHHhcCCcEEEEeehhhCChhhchhhhhHHHHhhCCcE
Confidence 999999999999999999876 2 22 23344679999999999864 67999999999999999999999999999999
Q ss_pred EEecCCCCCCCCCCCccccccc-hhHHHHHhhccCCCceEEEecCCCCCCCCcccCCCccceEEEEEecCCccHHHHHHH
Q 003798 574 IILPFHKEYPNNLEGTQILRRG-VQSVNIKVLSHAPCSVGVLVDKGNFRNPMHAAGGSMRRHHFVVLFLGGADAREALAY 652 (794)
Q Consensus 574 Iilp~h~~~~~d~~g~~~~~~~-~~~~n~~vl~~ApCsVgIlvdRg~~~~~~~~~~~~~~~~~I~v~f~GG~dDreAL~~ 652 (794)
|++||||+|+.| |..|+.+. +|.+|++|+++|||||||+|||| .++.. ........++|+++|+||+||||||+|
T Consensus 558 iilpfhk~~~~~--~~~e~~~~~~r~in~~vl~~aPCSVgIlvdRg-~~~~~-~~~~~~~~~~v~~lF~GG~DDrEALa~ 633 (769)
T KOG1650|consen 558 IILPFHKHWSDG--GTLESDDPAIRELNRNVLKNAPCSVGILVDRG-LRRSG-VTQKRGSSYKVVVLFLGGKDDREALAL 633 (769)
T ss_pred EEeehhhhccCC--CceecCcHHHHHHHHHHHhcCCCeEEEEEecC-ccccc-ceecccceeEEEEEecCChhhHHHHHH
Confidence 999999999944 68888877 99999999999999999999998 22111 222233678999999999999999999
Q ss_pred HHHHhcCCCeEEEEEEeeccCCCCC----chhhhhhHHHHHHHH-HhhcCCCCceEEE-EEEecChHHHHHHHHhhhccC
Q 003798 653 ADRMVGNLDVSLTVIRFLSFNHEGD----DEMEKKLDDGLVTWF-WVKNESNERVRYR-EVVVRNGAETVASIQAVNDEA 726 (794)
Q Consensus 653 A~rma~~~~v~ltvl~~~~~~~~~~----~~~~~~~d~~~l~~~-~~~~~~~~~v~y~-e~~v~~~~~~~~~i~~~~~~~ 726 (794)
+.||++||.+++||+||.++++..+ +++++..|++..+++ +..++.+.++.|. ||.++++.||.++++++.++
T Consensus 634 ~~rm~~~~~v~lTVirf~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~ek~v~~~~et~~~~~~~~~~- 712 (769)
T KOG1650|consen 634 AKRMAENPRVTLTVIRFFPDESKYNRKVLVEVGKMLDQEGLEDFVKSTRESNLDIIYAEEKIVLNGAETTALLRSITED- 712 (769)
T ss_pred HHHHhhCCceEEEEEEeeccchhhcccccchhhhhhhhhHHHHHHHHhhhchhhhhhhhHHHHhcchhHHHHHHHhccc-
Confidence 9999999999999999998654322 467888999999998 6666666788888 69999999999999999998
Q ss_pred cccEEEEecccCCCCccccccCCCCCCCccchhhhhhhccCCCCceeEEEEEeec
Q 003798 727 YCDLWIVGRYQGINGKLLEGLEAWSEDNELGVIGDYVASIDFGSTASVLVMQQQV 781 (794)
Q Consensus 727 ~~DL~iVGr~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~~~SvLvvqq~~ 781 (794)
|||++|||+++.+++.++|++||+||||||+|||.|+|+||.+++||||+|||.
T Consensus 713 -ydL~ivGr~~~~~~~~t~gl~~W~e~pELg~IGd~las~~~~~~~svlvvqq~~ 766 (769)
T KOG1650|consen 713 -YDLFIVGRSHGMLSEATGGLSEWSECPELGVIGDLLASSDFSSKVSVLVVQQQL 766 (769)
T ss_pred -cceEEEecccccccchhcCchhcccCccccccCccccccccCccceEEEEEeee
Confidence 999999999999999999999999999999999999999999999999999987
No 3
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=100.00 E-value=2.7e-46 Score=437.05 Aligned_cols=371 Identities=15% Similarity=0.190 Sum_probs=314.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCCChhHHHHHHHHhhCccccCCchhhhhccCCCCcHHHHHHHHHHHHHHHHHHHhhc
Q 003798 44 LVLFEIVFIICTTSIIRFLLKPLKQPRVISEMIGGIIVGPSILGRNKKFAEAMLPDNSQLVVRSVGIMAFMYFMFIAGIK 123 (794)
Q Consensus 44 ~~l~~i~lil~~~~l~~~ll~rl~~P~ii~~IlaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle 123 (794)
.++.++.+++.++.++..++||+|+|+++|||++|+++||+++|.++ ..+.++.++++|++++||.+|+|
T Consensus 5 ~~l~~~~~~l~~a~i~~~l~~rl~lp~vlgyilaGillGP~~lg~i~----------~~~~i~~laelGvv~LlF~iGLE 74 (621)
T PRK03562 5 HTLIQALIYLGAAVLIVPIAVRLGLGSVLGYLIAGCIIGPWGLRLVT----------DVESILHFAEFGVVLMLFVIGLE 74 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhCcccccCCC----------CHHHHHHHHHHHHHHHHHHHHhC
Confidence 47999999999999999999999999999999999999999999864 24568899999999999999999
Q ss_pred cChhHHHhcCchhhHHHHHHHHHHHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHhhccHHHHHHHHHhcCccCChhHH
Q 003798 124 MDFTLLKRCGRKHVYIAVTGVIIPTATSAAVAFLTRKSMDPELAKVSSIGAITTSLAVTSFPVLNPILKDLNLLSSEMGR 203 (794)
Q Consensus 124 ~d~~~l~~~~~~~~~ia~~~~~~p~~l~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~l~~s~~g~ 203 (794)
+|++.+++.+|+++.+|..++++|+++++.++++++..+ ..++++|.+++.||++++.++|+|+|+++++.||
T Consensus 75 l~~~~l~~~~~~~~~~g~~qv~~~~~~~~~~~~~~g~~~-------~~al~ig~~la~SStaiv~~~L~e~~~l~t~~G~ 147 (621)
T PRK03562 75 LDPQRLWKLRRSIFGGGALQMVACGGLLGLFCMLLGLRW-------QVALLIGLGLALSSTAIAMQAMNERNLMVTQMGR 147 (621)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH-------HHHHHHHHHHHHHHHHHHHHHHHHhccccCchHH
Confidence 999999999999999999999999999888888776432 6789999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCC-chhHHH-HHHHHHH----HHHHHHHHHHHHHHHHHHhCCCCCcccchHHH
Q 003798 204 MAIVTAVIGDAIGINIVIAFEAAKQGEGD-SVDAVW-YLISLVI----LLAFICIAVRRTMLWIVHKTPVGKPVSQGYIV 277 (794)
Q Consensus 204 l~ls~a~v~D~~~~ill~v~~~~~~~~~~-~~~~l~-~~~~~~~----~~~~~~~v~r~~~~~i~~~~~~~~~~~e~~~~ 277 (794)
.+++.++++|+.++++++++..+...+.. +....+ ..+..++ ++++..++.+|+.+|+.++. .+|.+..
T Consensus 148 ~~l~~ll~~Dl~~i~ll~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~-----~~e~~~~ 222 (621)
T PRK03562 148 SAFAILLFQDIAAIPLVAMIPLLAASGASTTLGAFALSALKVAGALALVVLGGRYVTRPALRFVARSG-----LREVFTA 222 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CchHHHH
Confidence 99999999999999998887655432111 111222 2222222 22233345555555554431 3678888
Q ss_pred HHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccchhh
Q 003798 278 GILLGVLVMGFLTDMFGMAIANGPLWLGLVIPDGPPLGATLVERTETLIMEIFMPFAFAVVGMYTDVYAMFEFGWSGLSP 357 (794)
Q Consensus 278 ~il~~~l~~~~~ae~~G~~~~lgaflaGl~i~~~~~~~~~l~~kl~~~~~~~~~PlfF~~~G~~~dl~~l~~~~~~~~~~ 357 (794)
.+++++++++++++.+|+|+.+|||++|+++++ ++++++++++++++ .++|+|+||+.+|+++|+..+. . .|+.
T Consensus 223 ~~l~lv~~~a~la~~~Gls~~lGAFlAGl~l~~-~~~~~~le~~i~pf-~~lll~lFFi~vG~~id~~~l~---~-~~~~ 296 (621)
T PRK03562 223 VALFLVFGFGLLMEEVGLSMALGAFLAGVLLAS-SEYRHALESDIEPF-KGLLLGLFFIAVGMSIDFGTLL---E-NPLR 296 (621)
T ss_pred HHHHHHHHHHHHHHHhCccHHHHHHHHHHHhcC-CccHHHHHHHHHHH-HHHHHHHHHHHhhhhccHHHHH---H-HHHH
Confidence 888999999999999999999999999999998 68899999999998 7999999999999999998775 2 3444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhHHHHHHHHHHhhhhccccCCchhHHHHHHHHHHHHhHHHHH
Q 003798 358 LFGMIVTGYISKLLGTLIPSLLCQMPFRDSLTLSLMMSLRGQVELLLYIHWIDKLIIGVPPFTLLVLSTVVITGIAGPLI 437 (794)
Q Consensus 358 ~~~i~~~~~l~K~~~~~l~~~~~~~~~~e~~~lgl~m~~kG~~~l~~~~~~~~~~ii~~~~~~~lv~~~ll~t~i~~plv 437 (794)
++.++++.+++|++++++.++++|+++++++.+|++|+++|+++++++..+.+.|+++++.++.+++++++ |++.+|++
T Consensus 297 il~~~~~~~~~K~~~~~~~~~~~g~~~~~a~~~gl~L~~~Gef~~vl~~~a~~~~~i~~~~~~~lv~~v~l-S~~~tP~l 375 (621)
T PRK03562 297 ILILLLGFLAIKIAMLWLLARPLGVPRKQRRWFAVLLGQGGEFAFVVFGAAQMANVLEPEWAKLLTLAVAL-SMAATPLL 375 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHhccccHHHHHHHHHHHCCCCCHHHHHHHHHHHHH-HHHHHHHH
Confidence 55666678899999999999999999999999999999999999999999999999999999999987777 67777777
Q ss_pred HhhcCC
Q 003798 438 SFLYDP 443 (794)
Q Consensus 438 ~~l~~~ 443 (794)
..+|++
T Consensus 376 ~~~~~~ 381 (621)
T PRK03562 376 LVLLDR 381 (621)
T ss_pred HHhhhH
Confidence 666654
No 4
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=100.00 E-value=4.8e-46 Score=433.66 Aligned_cols=374 Identities=17% Similarity=0.236 Sum_probs=319.1
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCCChhHHHHHHHHhhCccccCCchhhhhccCCCCcHHHHHHHHHHHHHHHHHHHhhcc
Q 003798 45 VLFEIVFIICTTSIIRFLLKPLKQPRVISEMIGGIIVGPSILGRNKKFAEAMLPDNSQLVVRSVGIMAFMYFMFIAGIKM 124 (794)
Q Consensus 45 ~l~~i~lil~~~~l~~~ll~rl~~P~ii~~IlaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~ 124 (794)
++..+.++++++.+++.++||+|+|++++||++|+++||+++|.++ ..+.++.++++|++++||.+|+|+
T Consensus 7 ~~~~~~~~l~~a~~~~~l~~rl~~P~ivg~IlaGillGp~~lg~~~----------~~~~~~~la~lGli~llF~~Gle~ 76 (558)
T PRK10669 7 LITTIVGGLVLAFILGMLANRLRISPLVGYLLAGVLAGPFTPGFVA----------DTKLAPELAELGVILLMFGVGLHF 76 (558)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhCcccccccc----------chHHHHHHHHHHHHHHHHHhHhcC
Confidence 3567788889999999999999999999999999999999999753 246788999999999999999999
Q ss_pred ChhHHHhcCchhhHHHHHHHHHHHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHhhccHHHHHHHHHhcCccCChhHHH
Q 003798 125 DFTLLKRCGRKHVYIAVTGVIIPTATSAAVAFLTRKSMDPELAKVSSIGAITTSLAVTSFPVLNPILKDLNLLSSEMGRM 204 (794)
Q Consensus 125 d~~~l~~~~~~~~~ia~~~~~~p~~l~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~l~~s~~g~l 204 (794)
|++.+++.++.....++.++++|++++++++++++..+ ..++++|+++|.||++++.++++|+|+++++.||+
T Consensus 77 d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~al~lg~~ls~tS~~vv~~~L~e~~~l~s~~G~~ 149 (558)
T PRK10669 77 SLKDLMAVKSIAIPGAIAQIAVATLLGMALSAVLGWSL-------MTGIVFGLCLSTASTVVLLRALEERQLIDSQRGQI 149 (558)
T ss_pred CHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhCCCH-------HHHHHHHHHHHHHHHHHHHHHHHhcCcccCcchHH
Confidence 99999999888888888899999999988887776432 67888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc---CCCCch-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcccchHH
Q 003798 205 AIVTAVIGDAIGINIVIAFEAAKQ---GEGDSV-----DAVWYLISLVILLAFICIAVRRTMLWIVHKTPVGKPVSQGYI 276 (794)
Q Consensus 205 ~ls~a~v~D~~~~ill~v~~~~~~---~~~~~~-----~~l~~~~~~~~~~~~~~~v~r~~~~~i~~~~~~~~~~~e~~~ 276 (794)
++++++++|+.+++++.++..+.. .+..+. ...+.++..+++++++.++.|++..|+.++.++.+ .+|.++
T Consensus 150 ~l~~~~~~Dl~~i~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~e~~~ 228 (558)
T PRK10669 150 AIGWLIVEDLVMVLTLVLLPAVAGMMEQGDVGFATLAVDLGITIGKVIAFIAIMMLVGRRLVPWILARSAATG-SRELFT 228 (558)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CchHHH
Confidence 999999999999988887665432 111111 12344556667777788889999999999877654 577888
Q ss_pred HHHHHHHHHHHHH-HHHhchhhhHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccch
Q 003798 277 VGILLGVLVMGFL-TDMFGMAIANGPLWLGLVIPDGPPLGATLVERTETLIMEIFMPFAFAVVGMYTDVYAMFEFGWSGL 355 (794)
Q Consensus 277 ~~il~~~l~~~~~-ae~~G~~~~lgaflaGl~i~~~~~~~~~l~~kl~~~~~~~~~PlfF~~~G~~~dl~~l~~~~~~~~ 355 (794)
..++++++++++. ++.+|+|+++|||++|+++|+ ++.++++.+...++ .++|+|+||+.+|+++|+..+. ..+
T Consensus 229 l~~l~~~l~~a~~~~~~lGls~~lGAflaGl~l~~-~~~~~~~~~~~~~~-~~~f~plFFv~~G~~~d~~~l~----~~~ 302 (558)
T PRK10669 229 LSVLALALGIAFGAVELFDVSFALGAFFAGMVLNE-SELSHRAAHDTLPL-RDAFAVLFFVSVGMLFDPMILI----QQP 302 (558)
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHhC-ChhHHHHHHHHhhH-HHHHHHHHHHHhhhhcCHHHHH----HHH
Confidence 8788888877764 699999999999999999998 57888888888776 7899999999999999998775 223
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhHHHHHHHHHHhhhhccccCCchhHHHHHHHHHHHHhHHH
Q 003798 356 SPLFGMIVTGYISKLLGTLIPSLLCQMPFRDSLTLSLMMSLRGQVELLLYIHWIDKLIIGVPPFTLLVLSTVVITGIAGP 435 (794)
Q Consensus 356 ~~~~~i~~~~~l~K~~~~~l~~~~~~~~~~e~~~lgl~m~~kG~~~l~~~~~~~~~~ii~~~~~~~lv~~~ll~t~i~~p 435 (794)
...+.++++.+++|++++++.++++|+++|+++.+|+.|++||+++++++..+.+.|+++++.|++++++++++++++|.
T Consensus 303 ~~~~~~~~~~~v~K~~~~~~~~~~~g~~~~~a~~~gl~l~~~Gef~lii~~~~~~~gii~~~~~~~~v~~~~~t~~~~P~ 382 (558)
T PRK10669 303 LAVLATLAIIVFGKSLAAFFLVRLFGHSRRTALTIAASLAQIGEFAFILAGLGMALNLLPQAGQNLVLAGAILSIMLNPV 382 (558)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHhcccchHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 34455677788999999999999999999999999999999999999999999999999999999999999997777666
Q ss_pred HHHhhcC
Q 003798 436 LISFLYD 442 (794)
Q Consensus 436 lv~~l~~ 442 (794)
+.++..+
T Consensus 383 l~~~~~~ 389 (558)
T PRK10669 383 LFTLLER 389 (558)
T ss_pred HHHHhhH
Confidence 7666544
No 5
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=100.00 E-value=1.7e-45 Score=429.77 Aligned_cols=371 Identities=18% Similarity=0.222 Sum_probs=311.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCCChhHHHHHHHHhhCccccCCchhhhhccCCCCcHHHHHHHHHHHHHHHHHHHhhc
Q 003798 44 LVLFEIVFIICTTSIIRFLLKPLKQPRVISEMIGGIIVGPSILGRNKKFAEAMLPDNSQLVVRSVGIMAFMYFMFIAGIK 123 (794)
Q Consensus 44 ~~l~~i~lil~~~~l~~~ll~rl~~P~ii~~IlaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle 123 (794)
.++.++.+++.++.+...+++|+|+|++++|+++|+++||+++|.++ ..+.+..++++|++++||.+|+|
T Consensus 5 ~~~~~~~~~l~~a~~~~~l~~rl~~p~ilg~ilaGillGP~~lg~i~----------~~~~i~~laelGvv~LLF~iGLe 74 (601)
T PRK03659 5 DLLTAGVLFLFAAVVAVPLAQRLGIGAVLGYLLAGIAIGPWGLGFIS----------DVDEILHFSELGVVFLMFIIGLE 74 (601)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhccccccCCC----------cHHHHHHHHHHHHHHHHHHHHhc
Confidence 35778888999999999999999999999999999999999999864 13567899999999999999999
Q ss_pred cChhHHHhcCchhhHHHHHHHHHHHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHhhccHHHHHHHHHhcCccCChhHH
Q 003798 124 MDFTLLKRCGRKHVYIAVTGVIIPTATSAAVAFLTRKSMDPELAKVSSIGAITTSLAVTSFPVLNPILKDLNLLSSEMGR 203 (794)
Q Consensus 124 ~d~~~l~~~~~~~~~ia~~~~~~p~~l~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~l~~s~~g~ 203 (794)
+|++.+++.+|+++.+|..++++|+++++.+.++++.. +..++++|++++.||++++.++|+|+|+.+++.||
T Consensus 75 l~~~~l~~~~~~~~~~g~~~v~~t~~~~~~~~~~~g~~-------~~~a~~~g~~la~SSTaiv~~iL~e~~~~~t~~G~ 147 (601)
T PRK03659 75 LNPSKLWQLRRSIFGVGAAQVLLSAAVLAGLLMLTDFS-------WQAAVVGGIGLAMSSTAMALQLMREKGMNRSESGQ 147 (601)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-------HHHHHHHHHHHHHHHHHHHHHHHHHcccccCchHH
Confidence 99999999999999999999999998887776665432 36788899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcccchHHHHHH
Q 003798 204 MAIVTAVIGDAIGINIVIAFEAAKQGEGDSVDAV---WYLISLVILLAFICIAVRRTMLWIVHKTPVGKPVSQGYIVGIL 280 (794)
Q Consensus 204 l~ls~a~v~D~~~~ill~v~~~~~~~~~~~~~~l---~~~~~~~~~~~~~~~v~r~~~~~i~~~~~~~~~~~e~~~~~il 280 (794)
++++..+++|+.++++++++..+.........+. ..++..++++++..++.+|+.+|+.+. +.+|.++..++
T Consensus 148 ~~l~vll~~Di~~i~ll~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~e~~~~~~l 222 (601)
T PRK03659 148 LGFSVLLFQDLAVIPALALVPLLAGSADEHFDWMKIGMKVLAFAGMLIGGRYLLRPLFRFIAAS-----GVREVFTAAAL 222 (601)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----CCchHHHHHHH
Confidence 9999999999999999887765543322211111 112222222222334455555555432 24678888888
Q ss_pred HHHHHHHHHHHHhchhhhHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccchhhHHH
Q 003798 281 LGVLVMGFLTDMFGMAIANGPLWLGLVIPDGPPLGATLVERTETLIMEIFMPFAFAVVGMYTDVYAMFEFGWSGLSPLFG 360 (794)
Q Consensus 281 ~~~l~~~~~ae~~G~~~~lgaflaGl~i~~~~~~~~~l~~kl~~~~~~~~~PlfF~~~G~~~dl~~l~~~~~~~~~~~~~ 360 (794)
+++++++++++.+|+|+++|||++|+++++ ++++++++++++++ .++|+|+||+.+|+++|+..+. ..|+.++.
T Consensus 223 ~~vl~~a~l~~~~Gls~~LGAFlaGl~l~~-s~~~~~l~~~i~pf-~~lll~lFFi~vGm~id~~~l~----~~~~~il~ 296 (601)
T PRK03659 223 LLVLGSALFMDALGLSMALGTFIAGVLLAE-SEYRHELEIAIEPF-KGLLLGLFFISVGMALNLGVLY----THLLWVLI 296 (601)
T ss_pred HHHHHHHHHHHHhCccHHHHHHHHHHHhcC-CchHHHHHHHHHHH-HHHHHHHHHHHHhhhccHHHHH----HhHHHHHH
Confidence 999999999999999999999999999999 68899999999998 7999999999999999998876 34555666
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhHHHHHHHHHHhhhhccccCCchhHHHHHHHHHHHHhHHHHHHhh
Q 003798 361 MIVTGYISKLLGTLIPSLLCQMPFRDSLTLSLMMSLRGQVELLLYIHWIDKLIIGVPPFTLLVLSTVVITGIAGPLISFL 440 (794)
Q Consensus 361 i~~~~~l~K~~~~~l~~~~~~~~~~e~~~lgl~m~~kG~~~l~~~~~~~~~~ii~~~~~~~lv~~~ll~t~i~~plv~~l 440 (794)
++++.+++|++++++.++++|+++++++.+|++|+++|+++++++..+.+.|+++++.|+.+++++++ |++++|++..+
T Consensus 297 ~~~~~l~~K~~~~~~~~~~~g~~~~~al~~g~~L~~~Gef~~vl~~~a~~~g~i~~~~~~~lv~~v~l-s~~~tP~l~~~ 375 (601)
T PRK03659 297 SVVVLVAVKGLVLYLLARLYGLRSSERMQFAGVLSQGGEFAFVLFSAASSQRLLQGDQMALLLVVVTL-SMMTTPLLMKL 375 (601)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhccccHHHHHHHHHHhCCCCCHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 77778899999999999999999999999999999999999999999999999999999999887777 56778877777
Q ss_pred cCC
Q 003798 441 YDP 443 (794)
Q Consensus 441 ~~~ 443 (794)
|+|
T Consensus 376 ~~~ 378 (601)
T PRK03659 376 IDK 378 (601)
T ss_pred hHH
Confidence 655
No 6
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.1e-44 Score=399.52 Aligned_cols=378 Identities=22% Similarity=0.350 Sum_probs=325.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccCCChhHHHHHHHHhhCccccCCchhhhhccCCCCcHHHHHHHHHHHHHHHHHHHhh
Q 003798 43 LLVLFEIVFIICTTSIIRFLLKPLKQPRVISEMIGGIIVGPSILGRNKKFAEAMLPDNSQLVVRSVGIMAFMYFMFIAGI 122 (794)
Q Consensus 43 ~~~l~~i~lil~~~~l~~~ll~rl~~P~ii~~IlaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gl 122 (794)
...+.|+.++++++.+.+.++||+|+|+++||+++|+++||..++.. .+..+.++.++++|++++||.+|+
T Consensus 5 ~~~l~~~~iiL~~a~i~~~l~~rl~lp~vlg~llaGiilGp~~~~~~---------~~~~~~i~~laelGvi~LlF~~GL 75 (397)
T COG0475 5 SLILLQLLILLLVAVILGPLFKRLGLPPVLGYLLAGIILGPWGLLLI---------IESSEIIELLAELGVVFLLFLIGL 75 (397)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHhcCccccccc---------CCchHHHHHHHHHhHHHHHHHHHH
Confidence 35788999999999999999999999999999999999999544432 345899999999999999999999
Q ss_pred ccChhHHHhcCch-hhHHHHHHHHHHHHHHHHHHHH-hhccCCcchhhHHHHHHHHHHHhhccHHHHHHHHHhcCccCCh
Q 003798 123 KMDFTLLKRCGRK-HVYIAVTGVIIPTATSAAVAFL-TRKSMDPELAKVSSIGAITTSLAVTSFPVLNPILKDLNLLSSE 200 (794)
Q Consensus 123 e~d~~~l~~~~~~-~~~ia~~~~~~p~~l~~~~~~~-l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~l~~s~ 200 (794)
|+|++++||++|+ ....+..++..|+.++....+. ++..+ ..++++|.+++.||.++++++++|+|+.+++
T Consensus 76 E~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~-------~~al~lg~~l~~sS~~i~~~iL~e~~~~~~~ 148 (397)
T COG0475 76 EFDLERLKKVGRSVGLGVAQVGLTAPFLLGLLLLLGILGLSL-------IAALFLGAALALSSTAIVLKILMELGLLKTR 148 (397)
T ss_pred CcCHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHhccCh-------HHHHHHHHHHHHHHHHHHHHHHHHhccccch
Confidence 9999999999999 8888888888998888655543 43332 6799999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcccchHHHHH
Q 003798 201 MGRMAIVTAVIGDAIGINIVIAFEAAKQGEGDSV-DAVWYLISLVILLAFICIAVRRTMLWIVHKTPVGKPVSQGYIVGI 279 (794)
Q Consensus 201 ~g~l~ls~a~v~D~~~~ill~v~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~v~r~~~~~i~~~~~~~~~~~e~~~~~i 279 (794)
.|++++++++++|+.++++++++..+.+++.... ..+.......++.++..+..|++.+++.|+..+. +.+|..+.++
T Consensus 149 ~g~~~l~~~i~~Di~~i~lLai~~~l~~~g~~~~~~~~~~~~~~~~f~~~~l~~g~~l~~~~~r~~~~~-~~~e~~~~~~ 227 (397)
T COG0475 149 EGQLILGALVFDDIAAILLLAIVPALAGGGSGSVGFILGLLLAILAFLALLLLLGRYLLPPLFRRVAKT-ESSELFILFV 227 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccCCCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cchHHHHHHH
Confidence 9999999999999999999999998876655432 2345555666666666666777777777776543 2568889999
Q ss_pred HHHHHHHHHHHHHhchhhhHHHHHHHhhcCCCCCch-hHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccchhhH
Q 003798 280 LLGVLVMGFLTDMFGMAIANGPLWLGLVIPDGPPLG-ATLVERTETLIMEIFMPFAFAVVGMYTDVYAMFEFGWSGLSPL 358 (794)
Q Consensus 280 l~~~l~~~~~ae~~G~~~~lgaflaGl~i~~~~~~~-~~l~~kl~~~~~~~~~PlfF~~~G~~~dl~~l~~~~~~~~~~~ 358 (794)
+++++.+++++|.+|+|+++|||++|+++++. +.+ +++++|++++.+++|+|+||+.+|+++|++.+. ..+..+
T Consensus 228 l~i~l~~a~l~e~~gls~ilGAFlaGl~ls~~-~~~~~~l~~~i~~~~~~~fiplFFi~vG~~~dl~~l~----~~~~~~ 302 (397)
T COG0475 228 LLLVLGAAYLAELLGLSMILGAFLAGLLLSES-EYRKHELEEKIEPFGDGLFIPLFFISVGMSLDLGVLL----ENLLLI 302 (397)
T ss_pred HHHHHHHHHHHHHhChhHHHHHHHHHHHhccc-ccchHHHHHHHHhHHhHHHHHHHHHHhhHHcCHHHHh----ccHHHH
Confidence 99999999999999999999999999999995 455 799999999987799999999999999999987 345457
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhHHHHHHHHHHhhhhccccCCchhHHHHHHHHHHHHhHHHHHH
Q 003798 359 FGMIVTGYISKLLGTLIPSLLCQMPFRDSLTLSLMMSLRGQVELLLYIHWIDKLIIGVPPFTLLVLSTVVITGIAGPLIS 438 (794)
Q Consensus 359 ~~i~~~~~l~K~~~~~l~~~~~~~~~~e~~~lgl~m~~kG~~~l~~~~~~~~~~ii~~~~~~~lv~~~ll~t~i~~plv~ 438 (794)
..++.+..++|.+++++.++..|.+.+++...|+.+.++|+++++.++.+.+ +.++++.++..+.+++++|.+.+++.+
T Consensus 303 l~~~~~~i~~K~~~~~~~~~~~g~~~~~~~~~g~~~~~~ge~~~v~~~~~~~-~~i~~~~~~~~v~~smi~t~i~~~~~~ 381 (397)
T COG0475 303 LLLVALAILGKILGAYLAARLLGFSKRLALGIGLLLRQGGEFAFVLAGIALG-SAISEALLTAVVILSMITTPILPLLTP 381 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhhhhhhhHHHHHHHHhccc-chhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888889999999999999999999999999999999999999999998876 578888888888888887777776777
Q ss_pred hhcCC
Q 003798 439 FLYDP 443 (794)
Q Consensus 439 ~l~~~ 443 (794)
.+++.
T Consensus 382 ~~~~~ 386 (397)
T COG0475 382 ILLKR 386 (397)
T ss_pred HHHHH
Confidence 66643
No 7
>PRK05326 potassium/proton antiporter; Reviewed
Probab=100.00 E-value=1.4e-39 Score=379.23 Aligned_cols=381 Identities=15% Similarity=0.164 Sum_probs=313.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCCChhHHHHHHHHhhCccccCCchhhhhccCCCCcHHHHHHHHHHHHHHHHHHHh
Q 003798 42 FLLVLFEIVFIICTTSIIRFLLKPLKQPRVISEMIGGIIVGPSILGRNKKFAEAMLPDNSQLVVRSVGIMAFMYFMFIAG 121 (794)
Q Consensus 42 l~~~l~~i~lil~~~~l~~~ll~rl~~P~ii~~IlaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~G 121 (794)
...++++++++++++.+++.+++|+|+|.+++++++|+++||+++|.++ | +..+..+.++++|+++++|..|
T Consensus 4 ~~~~ll~~~~ll~l~~~~~~l~~r~~~P~ll~~il~GillGp~~lg~i~------~--~~~~~~~~i~~l~L~~iLF~~G 75 (562)
T PRK05326 4 INSLLLIGALLLLLSILASRLSSRLGIPSLLLFLAIGMLAGEDGLGGIQ------F--DNYPLAYLVGNLALAVILFDGG 75 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhCccccCCcc------c--CcHHHHHHHHHHHHHHHHHcCc
Confidence 3467889999999999999999999999999999999999999999753 1 2357889999999999999999
Q ss_pred hccChhHHHhcCchhhHHHHHHHHHHHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHhhccHHHHHHHHHhcCc-cCCh
Q 003798 122 IKMDFTLLKRCGRKHVYIAVTGVIIPTATSAAVAFLTRKSMDPELAKVSSIGAITTSLAVTSFPVLNPILKDLNL-LSSE 200 (794)
Q Consensus 122 le~d~~~l~~~~~~~~~ia~~~~~~p~~l~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~l-~~s~ 200 (794)
+|+|++.+|+++++++.+++.++++|++++...++++.... +..++++|+++++||++++.++++|+|+ ++++
T Consensus 76 l~~~~~~l~~~~~~~~~la~~gv~~t~~~~g~~~~~l~g~~------~~~alllgai~s~Td~a~v~~iL~~~~l~l~~~ 149 (562)
T PRK05326 76 LRTRWSSFRPALGPALSLATLGVLITAGLTGLFAHWLLGLD------WLEGLLLGAIVGSTDAAAVFSLLRGKGLNLKER 149 (562)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC------HHHHHHHhhhhccCchHHHHHHHhccCCCcchh
Confidence 99999999999999999999999999988655444433222 3788999999999999999999999995 7999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcccchHHHH
Q 003798 201 MGRMAIVTAVIGDAIGINIVIAFEAAKQGEGDS--VDAVWYLISLVILLAFICIAVRRTMLWIVHKTPVGKPVSQGYIVG 278 (794)
Q Consensus 201 ~g~l~ls~a~v~D~~~~ill~v~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~v~r~~~~~i~~~~~~~~~~~e~~~~~ 278 (794)
+++++.+++.+||.++++++.++..+..++..+ +..+..++..+++.++.+++.++++.|+.+|.... .++.+..+
T Consensus 150 v~~~l~~eS~~nD~~ai~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~g~l~~~l~~~~~~~--~~~~~~i~ 227 (562)
T PRK05326 150 VASTLEIESGSNDPMAVFLTITLIELITGGETGLSWGFLLLFLQQFGLGALIGLLGGWLLVQLLNRIALP--AEGLYPIL 227 (562)
T ss_pred HHhHhhhhhhcccHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc--hhhHHHHH
Confidence 999999999999999999888777665443321 22233445555666677778888899999887431 24567888
Q ss_pred HHHHHHHHHHHHHHhchhhhHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccchhhH
Q 003798 279 ILLGVLVMGFLTDMFGMAIANGPLWLGLVIPDGPPLGATLVERTETLIMEIFMPFAFAVVGMYTDVYAMFEFGWSGLSPL 358 (794)
Q Consensus 279 il~~~l~~~~~ae~~G~~~~lgaflaGl~i~~~~~~~~~l~~kl~~~~~~~~~PlfF~~~G~~~dl~~l~~~~~~~~~~~ 358 (794)
++++++++++++|.+|.|+++|+|++|+++++.++..+...+++.+...+++.|+||+++|+.+|++.+. ...+...
T Consensus 228 ~l~~~l~~~~~a~~lg~Sg~la~~iaGl~l~n~~~~~~~~i~~~~~~l~~l~~~~~Fv~lGl~~~~~~l~---~~~~~~l 304 (562)
T PRK05326 228 VLAGALLIFALTAALGGSGFLAVYLAGLVLGNRPIRHRHSILRFFDGLAWLAQIGMFLVLGLLVTPSRLL---DIALPAL 304 (562)
T ss_pred HHHHHHHHHHHHHHHCCcHHHHHHHHHHHHhCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH---HHHHHHH
Confidence 8999999999999999999999999999999875555555556666568899999999999999998775 2333323
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhHHHHHHHHHHhhhhccccCC-chhHHHHHHHHHHHHhHHHHH
Q 003798 359 FGMIVTGYISKLLGTLIPSLLCQMPFRDSLTLSLMMSLRGQVELLLYIHWIDKLIIGV-PPFTLLVLSTVVITGIAGPLI 437 (794)
Q Consensus 359 ~~i~~~~~l~K~~~~~l~~~~~~~~~~e~~~lgl~m~~kG~~~l~~~~~~~~~~ii~~-~~~~~lv~~~ll~t~i~~plv 437 (794)
++.+++.+++|+++++++++.+++++||+..+||. ++||.++++++..+...++.+. ..|+++.+++++++.+.++.+
T Consensus 305 ~i~~~l~~vaR~l~v~l~~~~~~~~~~e~~~i~~~-g~RG~v~i~lA~~~~~~~~~~~~~~~~~~~~vvl~S~~i~g~tl 383 (562)
T PRK05326 305 LLALFLILVARPLAVFLSLLPFRFNLREKLFISWV-GLRGAVPIVLATFPMMAGLPNAQLIFNVVFFVVLVSLLLQGTTL 383 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHccCCCCHhhhheeeee-cchhHHHHHHHHHHHHcCCCchhhhhhhhheeeHHHHHHHHhhH
Confidence 33445678899999999999999999999999995 8999999999999999898864 567787788888777777777
Q ss_pred HhhcC
Q 003798 438 SFLYD 442 (794)
Q Consensus 438 ~~l~~ 442 (794)
+.+.+
T Consensus 384 ~~~a~ 388 (562)
T PRK05326 384 PWAAR 388 (562)
T ss_pred HHHHH
Confidence 76654
No 8
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=100.00 E-value=3.1e-35 Score=313.12 Aligned_cols=270 Identities=20% Similarity=0.330 Sum_probs=232.5
Q ss_pred HHHHHHHHhhcccCCChhHHHHHHHHhhCccccCCchhhhhccCCCCcHHHHHHHHHHHHHHHHHHHhhccChhHHHhcC
Q 003798 54 CTTSIIRFLLKPLKQPRVISEMIGGIIVGPSILGRNKKFAEAMLPDNSQLVVRSVGIMAFMYFMFIAGIKMDFTLLKRCG 133 (794)
Q Consensus 54 ~~~~l~~~ll~rl~~P~ii~~IlaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~ 133 (794)
+++.+.+.++||+|+|++++++++|+++||+++|.++ ..+.++.++++|+++++|.+|+|+|++.+||++
T Consensus 2 ~~a~~~~~l~~~l~lP~~v~~il~GillGp~~lg~i~----------~~~~~~~l~~igl~~llF~~Gl~~d~~~l~~~~ 71 (273)
T TIGR00932 2 LAAVLAVPLSRRLGIPSVLGYLLAGVLIGPSGLGLIS----------NVEGVNHLAEFGVILLMFLIGLELDLERLWKLR 71 (273)
T ss_pred cHHHHHHHHHHHhCCCHHHHHHHHHHHhCcccccCCC----------ChHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 4577789999999999999999999999999998764 246799999999999999999999999999999
Q ss_pred chhhHHHHHHHHHH-HHHHHHHHHHhhccCCcchhhHHHHHHHHHHHhhccHHHHHHHHHhcCccCChhHHHHHHHHHHH
Q 003798 134 RKHVYIAVTGVIIP-TATSAAVAFLTRKSMDPELAKVSSIGAITTSLAVTSFPVLNPILKDLNLLSSEMGRMAIVTAVIG 212 (794)
Q Consensus 134 ~~~~~ia~~~~~~p-~~l~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~l~~s~~g~l~ls~a~v~ 212 (794)
|++..+++.++++| +++++.++++++.. +..++++|+++++||++++.++++|+|+.+++.|+++++++++|
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~lg~~ls~Ts~~v~~~il~~~~~~~~~~g~l~l~~~~~~ 144 (273)
T TIGR00932 72 KAAFGVGVLQVLVPGVLLGLLLGHLLGLA-------LGAAVVIGIILALSSTAVVVQVLKERGLLKTPFGQTVLGILLFQ 144 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHhHHHHHHHHHHHcCcccChHHHHHHHHHHHH
Confidence 99999999999999 67777677766543 26789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcccchHHHHHHHHHHHHHHHHH
Q 003798 213 DAIGINIVIAFEAAKQGEGDS-VDAVWYLISLVILLAFICIAVRRTMLWIVHKTPVGKPVSQGYIVGILLGVLVMGFLTD 291 (794)
Q Consensus 213 D~~~~ill~v~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~v~r~~~~~i~~~~~~~~~~~e~~~~~il~~~l~~~~~ae 291 (794)
|+++++++.+......+...+ ....+.+...+++.++.+++.++...|+.++.++.+ .+|.++..++.+++.+++++|
T Consensus 145 D~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~la~ 223 (273)
T TIGR00932 145 DIAVVPLLALLPLLATSASTEHVALALLLLKVFLAFLLLVLLGRWLLRPVLRLTAELR-PSELFTAGSLLLMFGSAYFAD 223 (273)
T ss_pred HHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CchHHHHHHHHHHHHHHHHHH
Confidence 999999998887766533222 223344444555555666778888889988876654 357888889999999999999
Q ss_pred HhchhhhHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHhccccc
Q 003798 292 MFGMAIANGPLWLGLVIPDGPPLGATLVERTETLIMEIFMPFAFAVVGMYTD 343 (794)
Q Consensus 292 ~~G~~~~lgaflaGl~i~~~~~~~~~l~~kl~~~~~~~~~PlfF~~~G~~~d 343 (794)
.+|.|+++|||++|+++++. +.++++.++++++. ++|+|+||+++|+++|
T Consensus 224 ~~g~s~~lgaf~aGl~~~~~-~~~~~l~~~l~~~~-~~f~plFF~~~G~~~~ 273 (273)
T TIGR00932 224 LLGLSMALGAFLAGVVLSES-EYRHKLESDLEPIG-GVLLPLFFISVGMSVD 273 (273)
T ss_pred HhCCcHHHHHHHHHHHHcCC-chHHHHHHHHHhHH-HHHHHHHHHHhCccCC
Confidence 99999999999999999995 55788999999997 9999999999999987
No 9
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]. These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.
Probab=100.00 E-value=3.8e-39 Score=359.96 Aligned_cols=371 Identities=24% Similarity=0.426 Sum_probs=84.4
Q ss_pred HHHHHHHHHHhhcccCCChhHHHHHHHHhhCccccCCchhhhhccCCCCcHHHHHHHHHHHHHHHHHHHhhccChhHHHh
Q 003798 52 IICTTSIIRFLLKPLKQPRVISEMIGGIIVGPSILGRNKKFAEAMLPDNSQLVVRSVGIMAFMYFMFIAGIKMDFTLLKR 131 (794)
Q Consensus 52 il~~~~l~~~ll~rl~~P~ii~~IlaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~ 131 (794)
+++.+.+.+.++||+++|.+++|+++|+++||.+++..+ |+ .+.++.++++|+.+++|.+|+|+|.+.+||
T Consensus 4 li~~~~~~~~l~~r~~iP~~i~~i~~Gi~lg~~~~~~~~-------~~--~~~~~~l~~i~l~~llF~~G~~~d~~~l~~ 74 (380)
T PF00999_consen 4 LILLAFVAGILFRRLGIPSIIGYILVGIVLGPSGLGLLE-------PD--NPSFELLAEIGLAFLLFEAGLELDIKELRR 74 (380)
T ss_dssp -----------------------------------------------------S-SSHHHHS--SSHHHHTTGGGG----
T ss_pred EeehHHHHHHHHHHhCCCHHHHHHHheeehhhhhhhhcc-------ch--hhHHHHHHHHHHHHHHHHHHHhhccccccc
Confidence 444566667789999999999999999999999888543 11 477889999999999999999999999999
Q ss_pred cCchhhHHHHHHHHHHHHH-HHHHHHHh-hccCCcchhhHHHHHHHHHHHhhccHHHHHHHHHhcCccCChhHHHHHHHH
Q 003798 132 CGRKHVYIAVTGVIIPTAT-SAAVAFLT-RKSMDPELAKVSSIGAITTSLAVTSFPVLNPILKDLNLLSSEMGRMAIVTA 209 (794)
Q Consensus 132 ~~~~~~~ia~~~~~~p~~l-~~~~~~~l-~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~l~~s~~g~l~ls~a 209 (794)
++|+.+.+++.++++|+.+ ++.+++++ ...+ .+..++++|.++++||++++.++++|.+..+++.++++.+++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~al~l~~~~~~ts~~~v~~~l~~~~~~~~~~~~~~~~~~ 149 (380)
T PF00999_consen 75 NWRRALALGLVGFLLPFILVGFLLSFFLFILGL-----SWAEALLLGAILSATSPAIVSPVLKELGLLPSRLGRLLLSES 149 (380)
T ss_dssp --------------------------------------------TTHHHHTT--HHHHHHHH-HHHT-SSTTHHHHTTTT
T ss_pred ccccccccccceeeehhhHHHHHHHHhhccchh-----hhHHHhhhHHhhhcccccchhhhhhhhhcccccccchhhhhc
Confidence 9999999999999999998 66666432 1111 136789999999999999999999998989999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCC-c-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcccchHHHHHHHHHHHHH
Q 003798 210 VIGDAIGINIVIAFEAAKQGEGD-S-VDAVWYLISLVILLAFICIAVRRTMLWIVHKTPVGKPVSQGYIVGILLGVLVMG 287 (794)
Q Consensus 210 ~v~D~~~~ill~v~~~~~~~~~~-~-~~~l~~~~~~~~~~~~~~~v~r~~~~~i~~~~~~~~~~~e~~~~~il~~~l~~~ 287 (794)
++||+++++++.+.....+.+.. + ......++..+...++..++.+++..|+.++. ++.++.+..+++++++..+
T Consensus 150 ~i~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~ 226 (380)
T PF00999_consen 150 VINDIIAIILLSILISLAQASGQSSLGQLLLSFLWIILIGIVIGLLFGWLLRRLIRRA---SPSSEIFILLVLALILLLY 226 (380)
T ss_dssp TTTTTTTTTTT---------------------------------------------------------------------
T ss_pred hhhccchhhhhhhhhhhhcccccccccchhcchhhhhhhheeeecccchHHHHhhhhc---cccchhhHHHHHHHHhhhc
Confidence 99999999998887776521111 1 11112222222233333333334444444432 2356788999999999999
Q ss_pred HHHHHhchhhhHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccchhhHHHHHHHHHH
Q 003798 288 FLTDMFGMAIANGPLWLGLVIPDGPPLGATLVERTETLIMEIFMPFAFAVVGMYTDVYAMFEFGWSGLSPLFGMIVTGYI 367 (794)
Q Consensus 288 ~~ae~~G~~~~lgaflaGl~i~~~~~~~~~l~~kl~~~~~~~~~PlfF~~~G~~~dl~~l~~~~~~~~~~~~~i~~~~~l 367 (794)
+++|.+|.|+++|+|++|+++++ .+.++++.++++++.++++.|+||+++|+++|++.+. .+...|...+.+.+..++
T Consensus 227 ~~a~~~g~s~~l~af~~Gl~~~~-~~~~~~~~~~l~~~~~~~~~~lfF~~iG~~~~~~~l~-~~~~~~~~~~~~~~~~~~ 304 (380)
T PF00999_consen 227 GLAEILGLSGILGAFIAGLILSN-SPFAERLEEKLESFWYGFFIPLFFVFIGMSLDFSSLF-NSPSVIILVLLLLIAILL 304 (380)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccceeeeeehcccc-ccccchhhhcccchhhHHHhhHHhhhhcccccccccc-cchhhhhhHHHHHHHHHH
Confidence 99999999999999999999996 6778889999999977999999999999999988873 013556667777777789
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHhHHHHHHHHHHhhhhccccCCchhHHHHHHHHHHHHhHHHHHHhhc
Q 003798 368 SKLLGTLIPSLLCQMPFRDSLTLSLMMSLRGQVELLLYIHWIDKLIIGVPPFTLLVLSTVVITGIAGPLISFLY 441 (794)
Q Consensus 368 ~K~~~~~l~~~~~~~~~~e~~~lgl~m~~kG~~~l~~~~~~~~~~ii~~~~~~~lv~~~ll~t~i~~plv~~l~ 441 (794)
+|++++++.+++.|.++||+..+|+.+++||+++++++..+.+.|.++++.+++++.++++++.+.|+.++.+.
T Consensus 305 ~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~la~~~~~~~~~~~~~~~~~~~~vl~t~ii~~~~~~~l~ 378 (380)
T PF00999_consen 305 GKFIGVYLASRLFGIPWKEALFIGLGMLPRGEVSLALALIALNLGIISEQMFTIIIAAVLLTIIIAGIILSPLL 378 (380)
T ss_dssp ------------------HHHHTTTTSS--HHHHHHHHHHHHH-------------------------------
T ss_pred hhhceeehhhhhcccccchhHHHHHhhcCccHHHHHHHHHHHhcCCCCHHHHHHheeeeeeHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999997777777776554
No 10
>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=9.2e-32 Score=269.79 Aligned_cols=370 Identities=20% Similarity=0.274 Sum_probs=305.5
Q ss_pred HHHHHHHHHHHHHHHhhcccCCChhHHHHHHHHhhCccccCCchhhhhccCCCCcHHHHHHHHHHHHHHHHHHHhhccCh
Q 003798 47 FEIVFIICTTSIIRFLLKPLKQPRVISEMIGGIIVGPSILGRNKKFAEAMLPDNSQLVVRSVGIMAFMYFMFIAGIKMDF 126 (794)
Q Consensus 47 ~~i~lil~~~~l~~~ll~rl~~P~ii~~IlaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~d~ 126 (794)
-.+..-+.++.+++.+..|+|+|+.+||+++|++.||..-|... +......++++|.+++||-+|++..+
T Consensus 9 ~tiv~gl~lAFl~G~lA~rlrlsPLVGyL~AGv~~gpftpGFva----------d~~La~~LAelGViLLmFgvGLhfsl 78 (408)
T COG4651 9 TTIVGGLVLAFLLGALANRLRLSPLVGYLLAGVLAGPFTPGFVA----------DQTLAPELAELGVILLMFGVGLHFSL 78 (408)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHhcCCCCCCccc----------chhHHHHHHHhhHHHHHHhcchheeH
Confidence 33444567788999999999999999999999999998777642 24455589999999999999999999
Q ss_pred hHHHhcCchhhHHHHHHHHHHHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHhhccHHHHHHHHHhcCccCChhHHHHH
Q 003798 127 TLLKRCGRKHVYIAVTGVIIPTATSAAVAFLTRKSMDPELAKVSSIGAITTSLAVTSFPVLNPILKDLNLLSSEMGRMAI 206 (794)
Q Consensus 127 ~~l~~~~~~~~~ia~~~~~~p~~l~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~l~~s~~g~l~l 206 (794)
+++......++--++.++.+...++.++++.++..+ ...+.+|.++|..|..++.|.|+|.++.+++-||+++
T Consensus 79 kdLLavk~iAipgAl~qia~at~lg~gL~~~lgws~-------~~glvfGlaLS~aSTVvllraLqEr~lidt~rG~iAi 151 (408)
T COG4651 79 KDLLAVKAIAIPGALAQIALATLLGMGLSSLLGWSF-------GTGIVFGLALSVASTVVLLRALEERQLIDTQRGRIAI 151 (408)
T ss_pred HHHhhHHHHhcchHHHHHHHHHHHHhHHHHHcCCCc-------ccceeeeehhhhHHHHHHHHHHHHhccccccCceEEE
Confidence 999877777777788888888889999998888765 3568899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc--C-CCCc-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcccchHHHH
Q 003798 207 VTAVIGDAIGINIVIAFEAAKQ--G-EGDS-----VDAVWYLISLVILLAFICIAVRRTMLWIVHKTPVGKPVSQGYIVG 278 (794)
Q Consensus 207 s~a~v~D~~~~ill~v~~~~~~--~-~~~~-----~~~l~~~~~~~~~~~~~~~v~r~~~~~i~~~~~~~~~~~e~~~~~ 278 (794)
+--+++|+..++.+...-++++ + +... ....+.......|+.++.++.|++..|+..+..... ..|.+...
T Consensus 152 GwLiveDl~mVl~Lvllpa~a~~~g~~~~~~~~~~~~l~~Tl~Kv~af~alml~VgrrviPw~le~~a~tG-srElf~L~ 230 (408)
T COG4651 152 GWLIVEDLAMVLALVLLPALAGVLGQGDVGFATLLVDLGITLGKVAAFIAIMLVVGRRLIPWILERVAATG-SRELFTLA 230 (408)
T ss_pred eehhHHHHHHHHHHHHhHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-cHHHHHHH
Confidence 9999999999887766654432 1 1111 122245668888999999999999999998854322 46888888
Q ss_pred HHHHHHHHHH-HHHHhchhhhHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccchhh
Q 003798 279 ILLGVLVMGF-LTDMFGMAIANGPLWLGLVIPDGPPLGATLVERTETLIMEIFMPFAFAVVGMYTDVYAMFEFGWSGLSP 357 (794)
Q Consensus 279 il~~~l~~~~-~ae~~G~~~~lgaflaGl~i~~~~~~~~~l~~kl~~~~~~~~~PlfF~~~G~~~dl~~l~~~~~~~~~~ 357 (794)
+++++++.++ .++.+|+++.+|||++|+++.+ ++++++..+..-+. .+.|.-+||+.+||.+|...+. .+.+.
T Consensus 231 vla~ALgVa~Ga~~LfgvsfaLGAffaGMvL~e-selshraa~~slpL-rdaFaVlFFvsVGmlf~P~~l~---~~pl~- 304 (408)
T COG4651 231 VLAIALGVAFGAAELFGVSFALGAFFAGMVLAE-SELSHRAAEDSLPL-RDAFAVLFFVSVGMLFDPMILI---QQPLA- 304 (408)
T ss_pred HHHHHHHHhhccceeeccchhHHHHHHHHHhcc-hhhhHHHHHhccCH-HHHHHHHHHHHhhhhcCcHHhh---cchHH-
Confidence 9999988877 6789999999999999999998 67788888887776 8999999999999999988776 34553
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhHHHHHHHHHHhhhhccccCCchhHHHHHHHHHHHHhHHHHH
Q 003798 358 LFGMIVTGYISKLLGTLIPSLLCQMPFRDSLTLSLMMSLRGQVELLLYIHWIDKLIIGVPPFTLLVLSTVVITGIAGPLI 437 (794)
Q Consensus 358 ~~~i~~~~~l~K~~~~~l~~~~~~~~~~e~~~lgl~m~~kG~~~l~~~~~~~~~~ii~~~~~~~lv~~~ll~t~i~~plv 437 (794)
+.....+...+|-+..+...+.+|.|.|.++.++..+.+.|+++++++..+.+.+++++ ..--++++.-+.+++..|+.
T Consensus 305 vlatllii~~gKs~aaf~ivr~Fg~~~~TaLtis~SLaqigEFsfIlaGLgi~l~llp~-~gr~LvlagailsIl~nPll 383 (408)
T COG4651 305 VLATLLIILFGKSVAAFFIVRAFGHPVRTALTISASLAQIGEFSFILAGLGIKLNLLPE-AGRDLVLAGAILSILLNPLL 383 (408)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHhCCcchHHHHHHHHHHhhhhHHHHHHHHhhhhccCcH-HHHHHHHHHHHHHHHHhHHH
Confidence 45555567789999999999999999999999999999999999999999999999984 44455555555588888876
Q ss_pred Hhhc
Q 003798 438 SFLY 441 (794)
Q Consensus 438 ~~l~ 441 (794)
....
T Consensus 384 f~~~ 387 (408)
T COG4651 384 FALL 387 (408)
T ss_pred HHHH
Confidence 5443
No 11
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=99.96 E-value=4.3e-27 Score=270.99 Aligned_cols=370 Identities=9% Similarity=0.048 Sum_probs=260.5
Q ss_pred cccCCCCCCccHHHHHHHHHHHHH-HHHHHHHhhcccCCChhHHHHHHHHhhCccccCCchhhhhccCCCCcHHHHHHHH
Q 003798 31 IFFGESPLDSPFLLVLFEIVFIIC-TTSIIRFLLKPLKQPRVISEMIGGIIVGPSILGRNKKFAEAMLPDNSQLVVRSVG 109 (794)
Q Consensus 31 ~~~g~~pl~~~l~~~l~~i~lil~-~~~l~~~ll~rl~~P~ii~~IlaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~ 109 (794)
.|+.-++-+.++... .++..++ ++.+..++-+|+.+|..+.++++|+++||.++|.++.. + +.......++ ++
T Consensus 2 ~w~~l~~~~~~l~~~--~lG~~lll~~l~s~~lkeRl~Ls~~~v~Ll~GiilGP~~l~~idP~-~--~g~~d~i~le-It 75 (810)
T TIGR00844 2 IWEQLEVTKAHVAYS--CVGIFSSIFSLVSLFVKEKLYIGESMVASIFGLIVGPHCLNWFNPL-S--WGNTDSITLE-IS 75 (810)
T ss_pred CcccccccchhhHHH--HHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHhhhhhhccCChh-h--cccchHHHHH-HH
Confidence 365555555554333 3333333 34444444459999999999999999999998865310 0 0001233445 99
Q ss_pred HHHHHHHHHHHhhccChhHHHhcCchhhHHHHHHHHHHHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHhhccHHHHHH
Q 003798 110 IMAFMYFMFIAGIKMDFTLLKRCGRKHVYIAVTGVIIPTATSAAVAFLTRKSMDPELAKVSSIGAITTSLAVTSFPVLNP 189 (794)
Q Consensus 110 ~lgl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~~~p~~l~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~ 189 (794)
++++.+.+|.+|++++.+.+++.++..+.+++.++.+++++++++++++...++ +..++++|+++++|++.....
T Consensus 76 eIvL~I~LFa~Gl~L~~~~Lrr~wrsV~rLl~~~M~lT~livAL~a~~Li~GL~-----~~~ALLLGAILAPTDPVLAss 150 (810)
T TIGR00844 76 RILLCLQVFAVSVELPRKYMLKHWVSVTMLLVPVMTSGWLVIALFVWILVPGLN-----FPASLLMGACITATDPVLAQS 150 (810)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-----HHHHHHHHhhhcCCcHHHHHH
Confidence 999999999999999999999999999999999999999999888887633222 478999999999999776666
Q ss_pred HHH---hcCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCC--c-hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003798 190 ILK---DLNLLSSEMGRMAIVTAVIGDAIGINIVIAFEAAKQG--EGD--S-VDAVWYLISLVILLAFICIAVRRTMLWI 261 (794)
Q Consensus 190 iL~---el~l~~s~~g~l~ls~a~v~D~~~~ill~v~~~~~~~--~~~--~-~~~l~~~~~~~~~~~~~~~v~r~~~~~i 261 (794)
+++ ..+ .+.++..++.+++.+||.++++++.+.+.+... ... . ...+..++..+++.++++++++.+..|+
T Consensus 151 V~kg~~~~r-vP~rLR~lL~~ESGlNDGlAfpfv~LaL~ll~~~~~g~~~~~~w~l~~~L~~i~~GiliG~vvG~l~~~L 229 (810)
T TIGR00844 151 VVSGTFAQK-VPGHLRNLLSCESGCNDGLAFPFVFLSMDLLLYPGRGGEIVKDWICVTILWECIFGSILGCIIGYCGRKA 229 (810)
T ss_pred HHhcccccc-CChHHHhHHhhhhhcccHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 665 223 578899999999999999999877666544421 111 1 1112233333334444444444444444
Q ss_pred HHhCCCCC-cccchHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCCCCCchhH-HHHHHHHHHHHHHHHHHHHHhc
Q 003798 262 VHKTPVGK-PVSQGYIVGILLGVLVMGFLTDMFGMAIANGPLWLGLVIPDGPPLGAT-LVERTETLIMEIFMPFAFAVVG 339 (794)
Q Consensus 262 ~~~~~~~~-~~~e~~~~~il~~~l~~~~~ae~~G~~~~lgaflaGl~i~~~~~~~~~-l~~kl~~~~~~~~~PlfF~~~G 339 (794)
.++..+.. -..+.++.+.++++++++.+++.+|.++++++|++|+++.+....... -...+......++..++|+++|
T Consensus 230 l~~l~rr~~i~~esfla~~LaLAli~~gla~lLggSGfLAVFVAGl~~gn~~~~~~~~~~~~f~e~ie~LLn~~lFVlLG 309 (810)
T TIGR00844 230 IRFAEGKNIIDRESFLAFYLILALTCAGFGSMLGVDDLLVSFFAGTAFAWDGWFAQKTHESNVSNVIDVLLNYAYFVYLG 309 (810)
T ss_pred HHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhcccchhhhHHHhhHHHHHHHHHHHHHHHHHH
Confidence 44332111 123456777788888889999999999999999999999985432222 2333556667889999999999
Q ss_pred ccccccccccc--cccchhhHHHHHHHHHHHHHHHHHHHHHhc--CCChHHHHHHHHHHHhHHHHHHHHHHhhhhccc
Q 003798 340 MYTDVYAMFEF--GWSGLSPLFGMIVTGYISKLLGTLIPSLLC--QMPFRDSLTLSLMMSLRGQVELLLYIHWIDKLI 413 (794)
Q Consensus 340 ~~~dl~~l~~~--~~~~~~~~~~i~~~~~l~K~~~~~l~~~~~--~~~~~e~~~lgl~m~~kG~~~l~~~~~~~~~~i 413 (794)
+.+....+... +...|..+++.+++.++.|+.++++...+. ..+|+|++++|| .++||..++.++..+.+.+.
T Consensus 310 a~L~~~~l~~~~l~~~~w~~ilLaL~LifVrRPpaVlll~~li~~~~s~rErlFigW-FGpRGIGSIyyl~~A~~~~~ 386 (810)
T TIGR00844 310 SILPWKDFNNGDIGLDVWRLIILSLVVIFLRRIPAVLILKPLIPDIKSWREAMFIGH-FGPIGVGAVFAAILSKSQLE 386 (810)
T ss_pred HhhCHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCHHHHHHhee-eccccHHHHHHHHHHHHhhh
Confidence 99987766400 012455456666677788988888764443 468999999999 79999999999999987764
No 12
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=99.96 E-value=4.4e-27 Score=270.62 Aligned_cols=368 Identities=13% Similarity=0.070 Sum_probs=259.0
Q ss_pred HHHHHHHHHHHhhcccCCChhHHHHHHHHhhCccccCCchhhhhccCCCCcHHHHHHHHHHHHHHHHHHHhhccChhHHH
Q 003798 51 FIICTTSIIRFLLKPLKQPRVISEMIGGIIVGPSILGRNKKFAEAMLPDNSQLVVRSVGIMAFMYFMFIAGIKMDFTLLK 130 (794)
Q Consensus 51 lil~~~~l~~~ll~rl~~P~ii~~IlaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~ 130 (794)
.+++++.....+++|+++|.+++++++|+++||..++... +.+ . +.+..+++..++|..|+++|++.+|
T Consensus 5 ~l~~~~~~~~~l~~r~~lP~~v~lil~Gi~lg~~~~~~~~-------~~~-~---~~~~~~~Lp~lLF~~g~~~~~~~l~ 73 (525)
T TIGR00831 5 ELVMLATAVAVTVKFIRLPYPIALILAGLLLGLAGLLPEV-------PLD-R---EIVLFLFLPPLLFEAAMNTDLRELR 73 (525)
T ss_pred HHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHhccccCCC-------CCC-H---HHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 3445566668899999999999999999999986443210 111 1 2345589999999999999999999
Q ss_pred hcCchhhHHHHHHHHHHHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHhhccHHHHHHHHHhcCccCChhHHHHHHHHH
Q 003798 131 RCGRKHVYIAVTGVIIPTATSAAVAFLTRKSMDPELAKVSSIGAITTSLAVTSFPVLNPILKDLNLLSSEMGRMAIVTAV 210 (794)
Q Consensus 131 ~~~~~~~~ia~~~~~~p~~l~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~l~~s~~g~l~ls~a~ 210 (794)
++++.+..+++.++++|++++....+++.... +..++++|+++|+|+++++.+++++.+ .++++.+++.++++
T Consensus 74 ~~~~~i~~la~~~vlit~~~v~~~~~~~~~l~------~~~alllGails~TDpvav~~il~~~~-~p~rl~~il~gESl 146 (525)
T TIGR00831 74 ENFRPIALIAFLLVVVTTVVVGFSLNWILGIP------LALALILGAVLSPTDAVAVLGTFKSIR-APKKLSILLEGESL 146 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------HHHHHHHHHHhCCCCHHHHHHHHhcCC-CCHHHHHHHhhhhh
Confidence 99999999999999999998776666543321 478999999999999999999999977 57889999999999
Q ss_pred HHHHHHHHHHHHHHHHhcC-CCCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcccchHHHHHHHHHHHHHH
Q 003798 211 IGDAIGINIVIAFEAAKQG-EGDS-VDAVWYLISLVILLAFICIAVRRTMLWIVHKTPVGKPVSQGYIVGILLGVLVMGF 288 (794)
Q Consensus 211 v~D~~~~ill~v~~~~~~~-~~~~-~~~l~~~~~~~~~~~~~~~v~r~~~~~i~~~~~~~~~~~e~~~~~il~~~l~~~~ 288 (794)
+||..+++++.++..+..+ +..+ ......++..++..++.++++..+..|+.++..+. +.....+++++++++++
T Consensus 147 lND~~alvlf~~~~~~~~~~~~~~~~~~~~~f~~~~~~gi~vG~~~g~~~~~l~~~~~~~---~~~~~~l~l~~~~~~y~ 223 (525)
T TIGR00831 147 LNDGAALVVFAIAVAVALGKGVFDPLNAALDFAVVCVGGIAAGLAVGYLAYRLLRAKIDD---PLVEIALTILAPFAGFL 223 (525)
T ss_pred hcchHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---cHHHHHHHHHHHHHHHH
Confidence 9999999999888876653 2222 22233333333344445555556666666553322 34567788899999999
Q ss_pred HHHHhchhhhHHHHHHHhhcCCCCCc---h---hHHHHHHHHHHHHHHHHHHHHHhcccccccccccccc-c--ch---h
Q 003798 289 LTDMFGMAIANGPLWLGLVIPDGPPL---G---ATLVERTETLIMEIFMPFAFAVVGMYTDVYAMFEFGW-S--GL---S 356 (794)
Q Consensus 289 ~ae~~G~~~~lgaflaGl~i~~~~~~---~---~~l~~kl~~~~~~~~~PlfF~~~G~~~dl~~l~~~~~-~--~~---~ 356 (794)
++|.+|.|+++++|++|+++++..+. . +...+.+......++.+++|+++|++++...... .. . .+ .
T Consensus 224 lAe~lg~SgilAvv~aGl~l~~~~~~~~~~~~~~~~~~~fw~~l~~ll~~~iFvllGl~l~~~~~~~-~~~~~~~~~~~~ 302 (525)
T TIGR00831 224 LAERFHFSGVIAVVAAGLILTNYGRDFSMSPTTRLIALDFWSVIVFLVNGIIFILIGVQTPGTIFSA-WKEILVAPAAVI 302 (525)
T ss_pred HHHHhCCCHHHHHHHHHHHHccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhhhhhhHHHH
Confidence 99999999999999999999885332 1 2223345455688999999999999987421110 00 0 11 0
Q ss_pred h-----HHHHHHHHHHHHHHHHHHHH--H-----hcCCChHHHHHHHHHHHhHHHHHHHHHHhhhh---cc-------cc
Q 003798 357 P-----LFGMIVTGYISKLLGTLIPS--L-----LCQMPFRDSLTLSLMMSLRGQVELLLYIHWID---KL-------II 414 (794)
Q Consensus 357 ~-----~~~i~~~~~l~K~~~~~l~~--~-----~~~~~~~e~~~lgl~m~~kG~~~l~~~~~~~~---~~-------ii 414 (794)
. .+++.......|+++++... + ..+++|||.+.++| .+.||.++++++..... .+ .+
T Consensus 303 ~~~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~r~~~v~~w-~G~RG~vslA~al~~p~~~~~g~~~p~r~~i 381 (525)
T TIGR00831 303 LALFTNAFVIYPVMTYVRFLWTMKPFSNRFLKKKPMEFGTRWKHVVSW-AGLRGAIPLALALSFPNQLLSGMAFPARYEL 381 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCChhhHHHhee-ccchHHHHHHHHHHccccccCCCCCchHHHH
Confidence 0 11222233445655443321 1 12578999999999 69999999998764321 11 12
Q ss_pred CCchhHHHHHHHHHHHHhHHHHHHhhc
Q 003798 415 GVPPFTLLVLSTVVITGIAGPLISFLY 441 (794)
Q Consensus 415 ~~~~~~~lv~~~ll~t~i~~plv~~l~ 441 (794)
-.-.+.+++++.++++...||+++++-
T Consensus 382 ~~~~~~vVl~TllvqG~tlp~l~r~l~ 408 (525)
T TIGR00831 382 VFLAAGVILFSLLVQGISLPIFVKRKF 408 (525)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHhcC
Confidence 222455677777787777788888764
No 13
>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
Probab=99.94 E-value=8e-24 Score=237.06 Aligned_cols=378 Identities=18% Similarity=0.204 Sum_probs=289.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCCChhHHHHHHHHhhCccccCCchhhhhccCCCCcHHHHHHHHHHHHHHHHHHHhhc
Q 003798 44 LVLFEIVFIICTTSIIRFLLKPLKQPRVISEMIGGIIVGPSILGRNKKFAEAMLPDNSQLVVRSVGIMAFMYFMFIAGIK 123 (794)
Q Consensus 44 ~~l~~i~lil~~~~l~~~ll~rl~~P~ii~~IlaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle 123 (794)
..+++..+++.+..+...+.+|+..|.+...++.|++.||.+++..+ | +....-+.+..+.+..++|..|+|
T Consensus 6 ~~~~~~~lil~l~~~~~~~~~~l~~~~i~~~ll~g~i~g~~~l~~~~-------~-~~~~~~el~~~l~l~ilLf~~g~~ 77 (429)
T COG0025 6 MLLFLLLLILLLGLLVSVLAGRLLLPEIPLLLLLGLLGGPPGLNLIS-------P-DLELDPELFLVLFLAILLFAGGLE 77 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhhhcccc-------c-cccCChHHHHHHHHHHHHHHhHhc
Confidence 45778888888999999999999999999999999999998887753 1 112222333499999999999999
Q ss_pred cChhHHHhcCchhhHHHHHHHHHHHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHhhccHHHHHHHHHhcCccCChhHH
Q 003798 124 MDFTLLKRCGRKHVYIAVTGVIIPTATSAAVAFLTRKSMDPELAKVSSIGAITTSLAVTSFPVLNPILKDLNLLSSEMGR 203 (794)
Q Consensus 124 ~d~~~l~~~~~~~~~ia~~~~~~p~~l~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~l~~s~~g~ 203 (794)
+|.+.+||+++....++..+++++.+......+++.+.. .+..++.+|+++|+|++.++.++.++.+ .+.++.+
T Consensus 78 l~~~~l~~~~~~I~~La~~~v~it~~~~g~~~~~l~~~i-----~~~~a~l~gAilspTDPv~v~~i~~~~~-vp~ri~~ 151 (429)
T COG0025 78 LDLRELRRVWRSILVLALPLVLITALGIGLLAHWLLPGI-----PLAAAFLLGAILSPTDPVAVSPIFKRVR-VPKRIRT 151 (429)
T ss_pred CCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCh-----hHHHHHHHhHHhcCCCchhhHHHHhcCC-CCHHHHH
Confidence 999999999999999999999999988777777774433 2478999999999999999999988866 7899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCC-CCc-hhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhCCCCCcccchHHH
Q 003798 204 MAIVTAVIGDAIGINIVIAFEAAKQGE-GDS-VDAVWYLISLV----ILLAFICIAVRRTMLWIVHKTPVGKPVSQGYIV 277 (794)
Q Consensus 204 l~ls~a~v~D~~~~ill~v~~~~~~~~-~~~-~~~l~~~~~~~----~~~~~~~~v~r~~~~~i~~~~~~~~~~~e~~~~ 277 (794)
+..+++++||..+++++.+......++ ..+ ......++..+ +.+.+.+++.+++.+++.+|. .. ....+..
T Consensus 152 iL~gESl~ND~~giv~f~~~l~~~~~~~~~~~~~~~~~fl~~~~~g~~~G~~iG~l~~~l~~~~~~~~--~~-~~~~~~~ 228 (429)
T COG0025 152 ILEGESLLNDGVGIVLFKVALAALLGTGAFSLGWALLLFLIEALGGILLGLLLGYLLGRLLRRLDRRG--WT-SPLLETL 228 (429)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--cc-chHHHHH
Confidence 999999999999999999888876533 322 22223333333 334444444444444444432 11 1356678
Q ss_pred HHHHHHHHHHHHHHHhchhhhHHHHHHHhhcC-----CCCCch-hHHHHHHHHHHHHHHHHHHHHHhccccccccccccc
Q 003798 278 GILLGVLVMGFLTDMFGMAIANGPLWLGLVIP-----DGPPLG-ATLVERTETLIMEIFMPFAFAVVGMYTDVYAMFEFG 351 (794)
Q Consensus 278 ~il~~~l~~~~~ae~~G~~~~lgaflaGl~i~-----~~~~~~-~~l~~kl~~~~~~~~~PlfF~~~G~~~dl~~l~~~~ 351 (794)
+.+...+..+.++|.+|.+++++.+++|++.. +..+.. +...+.+......++.-+.|++.|++++...+.
T Consensus 229 i~L~~~~~~~~~a~~l~~SGilAvvvaG~~~~~~~~~~~~~~~~~~~~~~fwe~l~~~ln~~iFiLlG~~i~~~~~~--- 305 (429)
T COG0025 229 LTLLLAFAAYLLAEALGVSGILAVVVAGLVLGEAVRINLSPASARLRLSSFWEVLDFLLNGLLFVLLGAQLPLSLLL--- 305 (429)
T ss_pred HHHHHHHHHHHHHHHhCcchHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH---
Confidence 89999999999999999999999999998774 112222 444555666678899999999999999988776
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHhcC------CChHHHHHHHHHHHhHHHHHHHHHHhhhhc------cccCCchh
Q 003798 352 WSGLSPLFGMIVTGYISKLLGTLIPSLLCQ------MPFRDSLTLSLMMSLRGQVELLLYIHWIDK------LIIGVPPF 419 (794)
Q Consensus 352 ~~~~~~~~~i~~~~~l~K~~~~~l~~~~~~------~~~~e~~~lgl~m~~kG~~~l~~~~~~~~~------~ii~~~~~ 419 (794)
...++..++.++..+++|++++++..+..+ .+++|+..++| -++||.++++++...... ..+..-.+
T Consensus 306 ~~~~~~~l~~~~~~~v~R~~~V~~~~~~~~~~~~~~~~~~~~~~l~w-~G~RG~vsla~al~~p~~~~~~~~~~i~~i~~ 384 (429)
T COG0025 306 ALGLLGLLVALVAVLLARPLWVFLSLKGSNLKLRDPLPWRERLFLSW-AGPRGVVSLALALLIPLELPGPARELILFIVF 384 (429)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCHHHHHHHhh-cccccHHHHHHHHHchhhccchhhhHHHHHHH
Confidence 344666788888899999999999998853 79999999999 699999999998766522 12222345
Q ss_pred HHHHHHHHHHHHhHHHHHHhhcC
Q 003798 420 TLLVLSTVVITGIAGPLISFLYD 442 (794)
Q Consensus 420 ~~lv~~~ll~t~i~~plv~~l~~ 442 (794)
.+++.++++.+...+|+.++...
T Consensus 385 ~vIl~Sl~v~g~t~~~l~~~~~~ 407 (429)
T COG0025 385 LVILFSLLVQGLTLPPLAKKLEV 407 (429)
T ss_pred HHHHHHHHHHhhhHHHHHHHhcc
Confidence 56666777777777777776553
No 14
>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]
Probab=99.92 E-value=8.3e-23 Score=215.16 Aligned_cols=370 Identities=15% Similarity=0.170 Sum_probs=299.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCCChhHHHHHHHHhhCccccCCchhhhhccCCCCcHHHHHHHHHHHHHHHHHHHh
Q 003798 42 FLLVLFEIVFIICTTSIIRFLLKPLKQPRVISEMIGGIIVGPSILGRNKKFAEAMLPDNSQLVVRSVGIMAFMYFMFIAG 121 (794)
Q Consensus 42 l~~~l~~i~lil~~~~l~~~ll~rl~~P~ii~~IlaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~G 121 (794)
...+++.-.++++++.+...+..|+|.|..+-.+..|++.|-.++|.++ | +..+.-..++++++++++|..|
T Consensus 5 ~~~ill~gsvlvivsif~s~~ssrfGvP~LllFl~iGm~aG~dGlg~I~------f--dNy~~Ay~vg~lALaiILfdgG 76 (574)
T COG3263 5 INLILLLGSVLVIVSIFSSLISSRFGVPLLLLFLSIGMLAGVDGLGGIE------F--DNYPFAYMVGNLALAIILFDGG 76 (574)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHcCCCcccccc------c--CccHHHHHHHHHHHHHHhhcCc
Confidence 3345555557778888999999999999999999999999999999774 1 2467788899999999999999
Q ss_pred hccChhHHHhcCchhhHHHHHHHHHHHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHhhccHHHHHHHHHhcCccCChh
Q 003798 122 IKMDFTLLKRCGRKHVYIAVTGVIIPTATSAAVAFLTRKSMDPELAKVSSIGAITTSLAVTSFPVLNPILKDLNLLSSEM 201 (794)
Q Consensus 122 le~d~~~l~~~~~~~~~ia~~~~~~p~~l~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~l~~s~~ 201 (794)
+.++++.+|...++++.++..+++++-.+....++++.+.. |.+++++|++...|+.+.+..+|.+.+ +|.++
T Consensus 77 ~~T~lss~r~a~~palsLATlGVl~Ts~Ltg~aA~~ll~l~------wle~~LiGAiVgSTDAAAVF~lL~~~n-l~erv 149 (574)
T COG3263 77 FGTQLSSFRVAAGPALSLATLGVLITSGLTGVAAAYLLNLD------WLEGLLIGAIVGSTDAAAVFSLLGGKN-LNERV 149 (574)
T ss_pred cCCcHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhccH------HHHHHHHHHhhccccHHHHHHHHccCC-hhhhh
Confidence 99999999999999999999999999888777776665543 488999999999999999999998877 58889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcccchHHHHH
Q 003798 202 GRMAIVTAVIGDAIGINIVIAFEAAKQGEGDS--VDAVWYLISLVILLAFICIAVRRTMLWIVHKTPVGKPVSQGYIVGI 279 (794)
Q Consensus 202 g~l~ls~a~v~D~~~~ill~v~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~v~r~~~~~i~~~~~~~~~~~e~~~~~i 279 (794)
+.+..-++--||-+++++....+.+..++.++ +..+..++.-+.+.++.++.+.++..|+++|+.- .+..|..++
T Consensus 150 ~stLEiESGtNDPmAvfLTitlieli~~get~l~~~~ll~f~~q~glG~l~G~~gg~l~~~~Inr~nL---d~GL~pil~ 226 (574)
T COG3263 150 ASTLEIESGSNDPMAVFLTITLIELIAGGETNLSWGFLLGFLQQFGLGLLLGLGGGKLLLQLINRINL---DSGLYPILA 226 (574)
T ss_pred hhhEEeecCCCCceeeehhHHHHHHHhccccccCHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcc---ccchhHHHH
Confidence 99999999999999988776666555444221 2333335566777888888888999999998732 246788999
Q ss_pred HHHHHHHHHHHHHhchhhhHHHHHHHhhcCCCCCc-hhHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccchhhH
Q 003798 280 LLGVLVMGFLTDMFGMAIANGPLWLGLVIPDGPPL-GATLVERTETLIMEIFMPFAFAVVGMYTDVYAMFEFGWSGLSPL 358 (794)
Q Consensus 280 l~~~l~~~~~ae~~G~~~~lgaflaGl~i~~~~~~-~~~l~~kl~~~~~~~~~PlfF~~~G~~~dl~~l~~~~~~~~~~~ 358 (794)
++..++.+.+++.+|.|++++.+++|+.+.|.+-. ++.+.+..+.+ +++.--+.|...|+-.+++++. ......+
T Consensus 227 la~~Ll~fs~t~aiGGsG~LaVYl~Gll~GN~~i~~r~~I~~f~dG~-twlaQI~MFlvLGLLvtPsql~---~iavPai 302 (574)
T COG3263 227 LAGGLLIFSLTGAIGGSGILAVYLAGLLLGNRPIRARHGILRFFDGL-AWLAQILMFLVLGLLVTPSQLL---PIAIPAI 302 (574)
T ss_pred HHHHHHHHHHHHHhcCcccHHHHHHHHHhCCCcchhHHHHHHHhccH-HHHHHHHHHHHHHHhcCHhhhh---HhhHHHH
Confidence 99999999999999999999999999999996333 34566666666 7888888999999999998876 4455556
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhHHHHHHHHHHhhhhccccCCch-hHHHHHHHHHHHHhHH
Q 003798 359 FGMIVTGYISKLLGTLIPSLLCQMPFRDSLTLSLMMSLRGQVELLLYIHWIDKLIIGVPP-FTLLVLSTVVITGIAG 434 (794)
Q Consensus 359 ~~i~~~~~l~K~~~~~l~~~~~~~~~~e~~~lgl~m~~kG~~~l~~~~~~~~~~ii~~~~-~~~lv~~~ll~t~i~~ 434 (794)
++.+...+++|.+++|+....++.+++|..+++| .+-||.++++++....-.|.-+.+. |++..+.++++-.+.+
T Consensus 303 lL~l~mifvaRP~aV~l~l~Pfrf~~~Ek~fvSW-vGLRGAv~IilAifpm~aglena~l~FNvAF~VVLvSlliQG 378 (574)
T COG3263 303 LLSLWMIFVARPLAVFLGLIPFRFNRREKLFVSW-VGLRGAVPIILAIFPMMAGLENARLFFNVAFFVVLVSLLIQG 378 (574)
T ss_pred HHHHHHHHHHhHHHHHHhhcccccCccchheeeh-hhcccchhhhHhhhHHhcCCccceEEeehhHHHHHHHHHHcc
Confidence 6777788899999999999999999999999999 6999999999998877666554443 3444444444333333
No 15
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3. This model is specific for the eukaryotic members members of this family.
Probab=99.91 E-value=1.6e-22 Score=232.67 Aligned_cols=375 Identities=12% Similarity=0.100 Sum_probs=260.8
Q ss_pred HHHHHHHHHHhh-ccc-CCChhHHHHHHHHhhCccccCCchhhhhccCCCCcHHHHHHHHHHHHHHHHHHHhhccChhHH
Q 003798 52 IICTTSIIRFLL-KPL-KQPRVISEMIGGIIVGPSILGRNKKFAEAMLPDNSQLVVRSVGIMAFMYFMFIAGIKMDFTLL 129 (794)
Q Consensus 52 il~~~~l~~~ll-~rl-~~P~ii~~IlaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l 129 (794)
+..++.+...+. |+. ++|..+..++.|+++|+...+... . +. ..-.-+.+-.+.+..++|..|+++|.+.+
T Consensus 17 ~~~~~~~~~~~~~~~~~~lP~s~llil~GlllG~i~~~~~~-~-----~~-~~l~~~lf~~~~LPpIlFe~g~~l~~~~f 89 (559)
T TIGR00840 17 LASLAKIGFHLTHKVIRAVPESVLLIVYGLLVGGIIKASPH-I-----DP-PTLDSSYFFLYLLPPIVLDAGYFMPQRNF 89 (559)
T ss_pred HHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHHcCCC-C-----cc-CCcCHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 333444444444 344 499999999999999986433210 0 00 01112456667888999999999999999
Q ss_pred HhcCchhhHHHHHHHHHHHHHHHHHHHHhhccCC--cchhhHHHHHHHHHHHhhccHHHHHHHHHhcCccCChhHHHHHH
Q 003798 130 KRCGRKHVYIAVTGVIIPTATSAAVAFLTRKSMD--PELAKVSSIGAITTSLAVTSFPVLNPILKDLNLLSSEMGRMAIV 207 (794)
Q Consensus 130 ~~~~~~~~~ia~~~~~~p~~l~~~~~~~l~~~~~--~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~l~~s~~g~l~ls 207 (794)
+++.+..+.+++.+++++.++.....+++..... ...-.+..++.+|+++|+|++..+..++++.+ .+.++-.++.+
T Consensus 90 ~~n~~~Il~lAv~Gvlit~~~ig~~l~~~~~~~~~~~~~l~~~~allfGAiiSaTDPVAVlai~~~~~-v~~~L~~ll~g 168 (559)
T TIGR00840 90 FENLGSILIFAVVGTLINAFVIGLSLYGICLIGGFGSIDIGLLDNLLFGSLISAVDPVAVLAVFEEYH-VNEKLYIIIFG 168 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCHHHHHHHhHHhcCCchHHHHHHHHhcC-CCcchhhheeh
Confidence 9999999999999999998877666654422111 00113578999999999999999999999988 58899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCC--CCchh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcccchHHHHHHH
Q 003798 208 TAVIGDAIGINIVIAFEAAKQGE--GDSVD----AVWYLISLVILLAFICIAVRRTMLWIVHKTPVGKPVSQGYIVGILL 281 (794)
Q Consensus 208 ~a~v~D~~~~ill~v~~~~~~~~--~~~~~----~l~~~~~~~~~~~~~~~v~r~~~~~i~~~~~~~~~~~e~~~~~il~ 281 (794)
++++||.++++++.++..+...+ ..... ....+....+..++++++...+..++.++.... +..+..++++
T Consensus 169 ESllNDavaIVLf~~~~~~~~~~~~~~~~~~~~~~i~~f~~~~~GGiliG~v~G~l~~~l~r~~~~~---~~~e~~l~l~ 245 (559)
T TIGR00840 169 ESLLNDAVTVVLYNTFIKFHKTADEPVTIVDVFEGCASFFVVTCGGLLVGVVFGFLVAFITRFTHHI---RQIEPLFVFL 245 (559)
T ss_pred hhhhhccHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---chhHHHHHHH
Confidence 99999999999998888765421 11111 111111112224455566666777777776433 2456777888
Q ss_pred HHHHHHHHHHHhchhhhHHHHHHHhhcCCC-----CCchhHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccchh
Q 003798 282 GVLVMGFLTDMFGMAIANGPLWLGLVIPDG-----PPLGATLVERTETLIMEIFMPFAFAVVGMYTDVYAMFEFGWSGLS 356 (794)
Q Consensus 282 ~~l~~~~~ae~~G~~~~lgaflaGl~i~~~-----~~~~~~l~~kl~~~~~~~~~PlfF~~~G~~~dl~~l~~~~~~~~~ 356 (794)
++++++.++|.+|.|++++.+++|+++.+. .+..+.-.+.+......++..+.|+++|+.+.... . ...|.
T Consensus 246 ~~yl~Y~lAE~l~~SGiLAvv~aGl~~~~y~~~n~s~~~~~~~~~f~~~ls~l~e~~IFvlLGl~l~~~~-~---~~~~~ 321 (559)
T TIGR00840 246 ISYLSYLFAETLHLSGILALIFCGITMKKYVEANMSRRSQTTIKYFMKMLSSLSETLIFIFLGVSLVTEN-H---EWNWA 321 (559)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch-h---hHHHH
Confidence 899999999999999999999999999642 22223333445555678889999999999763221 1 12344
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHh------cCCChHHHHHHHHHHHhHHHHHHHHHHhhhhccc-----cCCchhHHHHHH
Q 003798 357 PLFGMIVTGYISKLLGTLIPSLL------CQMPFRDSLTLSLMMSLRGQVELLLYIHWIDKLI-----IGVPPFTLLVLS 425 (794)
Q Consensus 357 ~~~~i~~~~~l~K~~~~~l~~~~------~~~~~~e~~~lgl~m~~kG~~~l~~~~~~~~~~i-----i~~~~~~~lv~~ 425 (794)
.+++.+++.+++|+++++..++. .+++++|.+.++| .+.||.++++++....+.+. +-..++.+++++
T Consensus 322 ~i~~~l~~~ll~R~l~V~~~~~~~~~~~~~~~~~~e~~il~w-~GlRGaVa~aLAl~l~~~~~~~~~~i~~~t~~VVl~T 400 (559)
T TIGR00840 322 FVVATLSFCVIYRVLGVRTLSWITNEFRPVEIPYKDQLVIFY-AGLRGAVAFALALLLDEKIFPYKFLFVTTTLVVVFFT 400 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChhhhhheee-eccccHHHHHHHHhCCCCCcchHHHHHHHHHeeehHH
Confidence 44555566678899998876653 3589999999999 69999999998865433221 212234455566
Q ss_pred HHHHHHhHHHHHHhhcC
Q 003798 426 TVVITGIAGPLISFLYD 442 (794)
Q Consensus 426 ~ll~t~i~~plv~~l~~ 442 (794)
+++....++|+++++.-
T Consensus 401 vlvqG~T~~pl~~~L~l 417 (559)
T TIGR00840 401 VIFQGGTIKPLVEVLKV 417 (559)
T ss_pred HHHHHhhHHHHHHHhCC
Confidence 77777778899988754
No 16
>KOG1965 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=99.77 E-value=3e-17 Score=181.76 Aligned_cols=385 Identities=15% Similarity=0.161 Sum_probs=259.3
Q ss_pred HHHHHHHHHHHHHHHHhhcccC---CChhHHHHHHHHhhCccccCCchhhh-----hccCCCCcHHHHHHHHHHHHHHHH
Q 003798 46 LFEIVFIICTTSIIRFLLKPLK---QPRVISEMIGGIIVGPSILGRNKKFA-----EAMLPDNSQLVVRSVGIMAFMYFM 117 (794)
Q Consensus 46 l~~i~lil~~~~l~~~ll~rl~---~P~ii~~IlaGiilGP~~lg~~~~~~-----~~lfp~~~~~~l~~l~~lgl~~ll 117 (794)
++-.+++++++.+..+++++-| +|.-+.-++.|+++|-.......... ...|.+ +.+-.+-+--+.
T Consensus 37 l~~~i~lL~l~iv~~hll~~~R~~~l~Esv~~l~iGl~vG~vi~~~~~~~s~~~~~~~~f~~------~~ff~vLLPpii 110 (575)
T KOG1965|consen 37 LLFFILLLVLCIVLGHLLEETRFRWLPESVAALFIGLLVGLVIRYSSGGKSSRGKRILVFSP------DLFFLVLLPPII 110 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhhcCCCcccccceeEEecc------cHHHHHhhchhh
Confidence 4444556677888899999988 99999999999999853321111000 011111 122233344478
Q ss_pred HHHhhccChhHHHhcCchhhHHHHHHHHHHHH-HHHHHHHHhhccCCcchhhHHHHHHHHHHHhhccHHHHHHHHHhcCc
Q 003798 118 FIAGIKMDFTLLKRCGRKHVYIAVTGVIIPTA-TSAAVAFLTRKSMDPELAKVSSIGAITTSLAVTSFPVLNPILKDLNL 196 (794)
Q Consensus 118 F~~Gle~d~~~l~~~~~~~~~ia~~~~~~p~~-l~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~l 196 (794)
|..|.+++.+.++|+.......++.|..+... +|.++.++.. ......-.+..++++|+.+|+|++..+..++.|++
T Consensus 111 f~sgy~l~k~~fF~n~~si~~fa~~Gt~IS~~~ig~gv~~~~~-~~~~~~~~f~d~L~fGaliSATDPVtvLaIfnel~- 188 (575)
T KOG1965|consen 111 FNSGYSLKKKQFFRNIGSILLFAIFGTFISAVIIGAGVYLLGF-GLLIYDLSFKDCLAFGALISATDPVTVLAIFNELG- 188 (575)
T ss_pred hcccceechhhhhhhhHHHHHhhhcceeeehhHHhhHHHHHhc-ccccccccHHHHHHHhhHhcccCchHHHHHHHHhC-
Confidence 99999999999999999999999998877755 4555544432 22112234689999999999999999999999998
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcccc
Q 003798 197 LSSEMGRMAIVTAVIGDAIGINIVIAFEAAKQGEGDSVD---AVWYLISLVILLAFICIAVRRTMLWIVHKTPVGKPVSQ 273 (794)
Q Consensus 197 ~~s~~g~l~ls~a~v~D~~~~ill~v~~~~~~~~~~~~~---~l~~~~~~~~~~~~~~~v~r~~~~~i~~~~~~~~~~~e 273 (794)
...++-.++.+++++||.++++++..+......+...+. .+..++.....-..++...+-+...+.|++.-++ .+.
T Consensus 189 vd~~Ly~LVFGESvLNDAvsIVlf~~i~~~~~~~~~~~~~~~~ig~Fl~~F~gS~~lGv~~GlisA~~lK~~~l~~-~~~ 267 (575)
T KOG1965|consen 189 VDPKLYTLVFGESVLNDAVSIVLFNTIQKFQLGSLNDWTAFSAIGNFLYTFFGSLGLGVAIGLISALVLKFLYLRR-TPS 267 (575)
T ss_pred CCcceeeeeecchhccchhHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CcH
Confidence 567889999999999999999999888876654433222 2222222211111222222222333333332222 245
Q ss_pred hHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCCC-----CCchhHHHHHHHHHHHHHHHHHHHHHhcc-ccccccc
Q 003798 274 GYIVGILLGVLVMGFLTDMFGMAIANGPLWLGLVIPDG-----PPLGATLVERTETLIMEIFMPFAFAVVGM-YTDVYAM 347 (794)
Q Consensus 274 ~~~~~il~~~l~~~~~ae~~G~~~~lgaflaGl~i~~~-----~~~~~~l~~kl~~~~~~~~~PlfF~~~G~-~~dl~~l 347 (794)
.+..+.+++....+++||.+|+++++..++.|+.+++. .+..+.-.+.+-.+...+..-+-|+++|+ -++....
T Consensus 268 lE~al~ll~sY~sY~lAE~~~lSGIvtVlFcGI~msHYt~~NlS~~Sqit~kh~f~~lsflAEtfIF~Y~Gl~~f~~~k~ 347 (575)
T KOG1965|consen 268 LESALMLLMSYLSYLLAEGCGLSGIVTVLFCGIVMSHYTYHNLSGESQITTKHFFRTLSFLAETFIFIYLGLSAFDFQKH 347 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccce
Confidence 67888999999999999999999999999999999874 34445555555556688888889999996 3344443
Q ss_pred ccccccchhhHHHHHHHHHHHHHHHHHHHHHhcC----------CChHHHHHHHHHHHhHHHHHHHHHHhhh-hc-----
Q 003798 348 FEFGWSGLSPLFGMIVTGYISKLLGTLIPSLLCQ----------MPFRDSLTLSLMMSLRGQVELLLYIHWI-DK----- 411 (794)
Q Consensus 348 ~~~~~~~~~~~~~i~~~~~l~K~~~~~l~~~~~~----------~~~~e~~~lgl~m~~kG~~~l~~~~~~~-~~----- 411 (794)
. +.....+....++.+++|..-.+-.+.+.+ +|.++-..++|.-..||.++++++..-. +.
T Consensus 348 ~---~~~~~fv~~~~vlV~lgRa~nvfPLs~L~N~~rr~k~~~~i~~~~q~~~~w~g~lRGAvs~ALa~~~~~~~~~~~~ 424 (575)
T KOG1965|consen 348 V---YKSLQFVFGAGVLVLLGRAANVFPLSFLLNLFRRHKECDLIDDKYQVIMWWAGGLRGAVSFALALGDFTDSPHTGG 424 (575)
T ss_pred e---eechHHHHHHHHHHHHHHHHHhccHHHHHHHHhccccccccChHHhhHhHhhhhhhHHHHHHHHhhhccccccccc
Confidence 3 332234566666777888887776666553 3445556666755589999999875332 11
Q ss_pred cccCCchhHHHHHHHHHHHHhHHHHHHhhcC
Q 003798 412 LIIGVPPFTLLVLSTVVITGIAGPLISFLYD 442 (794)
Q Consensus 412 ~ii~~~~~~~lv~~~ll~t~i~~plv~~l~~ 442 (794)
..+-.....++++++++....+.|+++++-.
T Consensus 425 q~i~tttl~vVlfT~lv~Gg~T~pml~~L~~ 455 (575)
T KOG1965|consen 425 QTIFTTTLVVVLFTVLVFGGSTKPMLSYLMI 455 (575)
T ss_pred cEEEEeeeeeeeeeeeeeCCccHHHHHHhcc
Confidence 3344445566677777778889999998864
No 17
>PRK14853 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=99.75 E-value=2.5e-15 Score=164.23 Aligned_cols=272 Identities=17% Similarity=0.223 Sum_probs=184.2
Q ss_pred HHHHHHHHHHHHHHHHHhhccChhHHH---hcCchh---hHHHHHHHHHHHHHHHHHHHHhhccCCcchhhHHHHHHHHH
Q 003798 104 VVRSVGIMAFMYFMFIAGIKMDFTLLK---RCGRKH---VYIAVTGVIIPTATSAAVAFLTRKSMDPELAKVSSIGAITT 177 (794)
Q Consensus 104 ~l~~l~~lgl~~llF~~Gle~d~~~l~---~~~~~~---~~ia~~~~~~p~~l~~~~~~~l~~~~~~~~~~~~~~l~lg~ 177 (794)
..+.+.+.-+.+|.|.+|+|+..+.+. ++.|++ ..-++.|+++|.++- +.+....+ ...--+|
T Consensus 62 l~~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~~~a~lP~~aAlGGm~vPaliy----~~~n~~~~------~~~~GW~- 130 (423)
T PRK14853 62 LGTWAADGLLAIFFFVVGLELKREFVAGDLRDPSRAALPVAAALGGMIVPALIY----VAVNLAGG------GALRGWA- 130 (423)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhHHHhccchhhHHHHHHHHHHHHHhHHHHHHHH----HHHhCCch------hhhhhhh-
Confidence 344455666677899999999655443 222333 456778888887433 33322111 1112222
Q ss_pred HHhhccHHHHHHHHHhcCc-cCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 003798 178 SLAVTSFPVLNPILKDLNL-LSSEMGRMAIVTAVIGDAIGINIVIAFEAAKQGEGDSVDAVWYLISLVILLAFICIAVRR 256 (794)
Q Consensus 178 ~ls~Ts~~vv~~iL~el~l-~~s~~g~l~ls~a~v~D~~~~ill~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~r~ 256 (794)
+-+.|+.+....+|+.+|. .++.++...++.|++||+.+++++++++ ++.. ...+.......+ ++.
T Consensus 131 Ip~ATDIAFalgvLallG~rvp~~l~~FLlaLAIvDDl~AIiVIAlfY----t~~i--~~~~L~~a~~~~--~~l----- 197 (423)
T PRK14853 131 IPTATDIAFALAVLAVIGTHLPSALRTFLLTLAVVDDLLAITVIAVFY----TSEL--NLEALLLALVPL--ALF----- 197 (423)
T ss_pred hhhhhHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHHHHhhhecc----CCCC--CHHHHHHHHHHH--HHH-----
Confidence 3345788888999999875 4889999999999999999999988877 2221 122222221111 111
Q ss_pred HHHHHHHhCCCCCcccchHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCCCC-----------CchhHHHHHHHHH
Q 003798 257 TMLWIVHKTPVGKPVSQGYIVGILLGVLVMGFLTDMFGMAIANGPLWLGLVIPDGP-----------PLGATLVERTETL 325 (794)
Q Consensus 257 ~~~~i~~~~~~~~~~~e~~~~~il~~~l~~~~~ae~~G~~~~lgaflaGl~i~~~~-----------~~~~~l~~kl~~~ 325 (794)
|+.++.+ +++.+.++++. +++.+..+..|+|+.+|+|++|+++|..+ +..++++++++++
T Consensus 198 ---~~l~~~~----V~~~~~Y~ilg--~~lW~~~~~sGiHatiAGvllGl~IP~~~~~~~~~~~~~~~p~~rle~~L~p~ 268 (423)
T PRK14853 198 ---WLLVQKR----VRKWWLLLPLG--VATWILVHESGVHATVAGVLLGFAVPVLRREGEEGPEAGPGLAEHLEHRLRPL 268 (423)
T ss_pred ---HHHHHcC----CchhhHHHHHH--HHHHHHHHHhCCCHHHHHHHHHHhcccccccccccccccCCHHHHHHHHHHHH
Confidence 2223322 34455665553 35677889999999999999999999521 2357899999999
Q ss_pred HHHHHHHHH-HHHhcccccc-cccccccccchhhHHHHHHHHHHHHHHHHHHHHHhc----------CCChHHHHHHHHH
Q 003798 326 IMEIFMPFA-FAVVGMYTDV-YAMFEFGWSGLSPLFGMIVTGYISKLLGTLIPSLLC----------QMPFRDSLTLSLM 393 (794)
Q Consensus 326 ~~~~~~Plf-F~~~G~~~dl-~~l~~~~~~~~~~~~~i~~~~~l~K~~~~~l~~~~~----------~~~~~e~~~lgl~ 393 (794)
+..+++|+| |+..|.++|. ..+.+ ...-.....+++..+++|.+|.+..++.. +++|++-..+|++
T Consensus 269 V~~~ILPLFAFANaGV~l~~~~~~~~--~~~~pv~lgI~lgL~vGK~lGI~~~~~l~~k~~~~~lP~~~~~~~l~gv~~L 346 (423)
T PRK14853 269 SAGVAVPVFAFFSAGVAIGGLSGLGA--ALTDPIVLGVVLGLVVGKPIGIFGTTYLLTKFTRASLDDDLTWIDVFGVALL 346 (423)
T ss_pred HHHHHHHHHHHHHhhheecCchhHHH--HhhchHHHHHHHHHHHHhHHHHHHHHHHHHHhCcCCCCCCCCHHHHHHHHHH
Confidence 999999999 9999999986 43410 11112456777788899999988776653 4789999999997
Q ss_pred HHhHHHHHHHHHHhhhh
Q 003798 394 MSLRGQVELLLYIHWID 410 (794)
Q Consensus 394 m~~kG~~~l~~~~~~~~ 410 (794)
-+.-=++++.+++.+++
T Consensus 347 ~GIGFTmSlFI~~LAf~ 363 (423)
T PRK14853 347 AGIGFTVSLLIGELAFG 363 (423)
T ss_pred HHHHHHHHHHHHHhhcC
Confidence 66666888888888883
No 18
>KOG4505 consensus Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=99.72 E-value=1e-15 Score=156.57 Aligned_cols=346 Identities=11% Similarity=0.074 Sum_probs=244.4
Q ss_pred HHHHHHHHHHHHhhcccCCChhHHHHHHHHhhCccccCCchhhhhccCCCCcHHHHHHHHHHHHHHHHHHHhhccChhHH
Q 003798 50 VFIICTTSIIRFLLKPLKQPRVISEMIGGIIVGPSILGRNKKFAEAMLPDNSQLVVRSVGIMAFMYFMFIAGIKMDFTLL 129 (794)
Q Consensus 50 ~lil~~~~l~~~ll~rl~~P~ii~~IlaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l 129 (794)
+.+.+++...-++=+|+=+...+.-.+.|+++||+.++..... .--+.+.....++.+-+-.=.|.+++|+.-..+
T Consensus 20 ~F~slF~l~S~yikekLllgEa~va~itGlI~Gphvlnlfdp~----~wgn~d~it~ei~RvvLcvqvfava~eLPr~Y~ 95 (467)
T KOG4505|consen 20 GFVSLFGLASLYIKEKLLLGEATVAVITGLIFGPHVLNLFDPN----SWGNKDYITYEISRVVLCVQVFAVAMELPRAYM 95 (467)
T ss_pred hHHHHHHHHHHHHHHhHhccchHHhhhhheeechhhhhhcCCc----cccCcchhhhhhhhhhHhHHHHHHHHhccHHHH
Confidence 3444455555555566777777777899999999998875210 001223456678888889999999999999999
Q ss_pred HhcCchhhHHHHHHHHHHHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHhhccHHHHHHHHHhc---CccCChhHHHHH
Q 003798 130 KRCGRKHVYIAVTGVIIPTATSAAVAFLTRKSMDPELAKVSSIGAITTSLAVTSFPVLNPILKDL---NLLSSEMGRMAI 206 (794)
Q Consensus 130 ~~~~~~~~~ia~~~~~~p~~l~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el---~l~~s~~g~l~l 206 (794)
.++++..+++-.--++.-+++.+++.|.+.+..+ ...++.+++++++|++.....+..+- |..+.++..+..
T Consensus 96 l~~w~Si~vlllpVmi~gwlvs~~fvy~l~p~ln-----f~~Sl~iaaCiTaTDPiLsssIV~~g~~akrvPeriR~lL~ 170 (467)
T KOG4505|consen 96 LEHWRSIFVLLLPVMIIGWLVSFGFVYALIPNLN-----FLTSLLIAACITATDPILSSSIVGGGKFAKRVPERIRNLLA 170 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-----HHHHHHHHHHccCCchhHHHHHhcCchHhhhChHHHHHHHH
Confidence 9999999888777777777888888888776553 46789999999999765555555543 345677888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCC-----c---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcccchHHHH
Q 003798 207 VTAVIGDAIGINIVIAFEAAKQGEGD-----S---VDAVWYLISLVILLAFICIAVRRTMLWIVHKTPVGKPVSQGYIVG 278 (794)
Q Consensus 207 s~a~v~D~~~~ill~v~~~~~~~~~~-----~---~~~l~~~~~~~~~~~~~~~v~r~~~~~i~~~~~~~~~~~e~~~~~ 278 (794)
+++-.||.+++.++.+.+.+...+.. + ...++.....+.++.+++++.|..+..-.++.-- ..|+++.+
T Consensus 171 AESGcNDGMaipflflai~Ll~h~~~r~~~rdwv~~~iLyec~fg~llG~vIG~l~r~~lk~aekkrli---d~eSfl~~ 247 (467)
T KOG4505|consen 171 AESGCNDGMAIPFLFLAIDLLRHKPRRKAGRDWVCDNILYECFFGCLLGCVIGYLSRQGLKFAEKKRLI---DRESFLIF 247 (467)
T ss_pred HhcCCCCCcchhHHHHHHHHHhcCchhccCCceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---cHHHHHHH
Confidence 99999999999998877765432211 1 1122222333344555566666655555444322 24788999
Q ss_pred HHHHHHHHHHHHHHhchhhhHHHHHHHhhcCCCCCchhHH-HHHHHHHHHHHHHHHHHHHhccccccccccc--ccccch
Q 003798 279 ILLGVLVMGFLTDMFGMAIANGPLWLGLVIPDGPPLGATL-VERTETLIMEIFMPFAFAVVGMYTDVYAMFE--FGWSGL 355 (794)
Q Consensus 279 il~~~l~~~~~ae~~G~~~~lgaflaGl~i~~~~~~~~~l-~~kl~~~~~~~~~PlfF~~~G~~~dl~~l~~--~~~~~~ 355 (794)
-+++++.|+.+.+.+|.+.++-.|.||.+++.+.-+.++. ..++..+...++.-.||++.|..++.+.++. .+...|
T Consensus 248 ~vvl~lfc~gigtiiGvddLl~sFfAGi~Fswd~wFsk~t~~s~v~~viD~lls~sfF~yfGaiipwsqFn~s~~gl~vw 327 (467)
T KOG4505|consen 248 YVVLALFCMGIGTIIGVDDLLVSFFAGIVFSWDEWFSKKTKESRVSEVIDLLLSLSFFLYFGAIIPWSQFNLSVEGLPVW 327 (467)
T ss_pred HHHHHHHHhhhhheechhHHHHHHHhhhhcchhHHhhhhhhhccHHHHHHHHHHHHHHHHhccccchhhcCCcccCchHH
Confidence 9999999999999999999999999999999876665544 4467777778888889999999999988861 011234
Q ss_pred hhHHHHHHHHHHH-HHHHHHHHHHhc--CCChHHHHHHHHHHHhHHHHHHHHHHhhh
Q 003798 356 SPLFGMIVTGYIS-KLLGTLIPSLLC--QMPFRDSLTLSLMMSLRGQVELLLYIHWI 409 (794)
Q Consensus 356 ~~~~~i~~~~~l~-K~~~~~l~~~~~--~~~~~e~~~lgl~m~~kG~~~l~~~~~~~ 409 (794)
- .+++.+..++. |+-++++.-... =.+|||++++|. .+|.|.-++..+..+.
T Consensus 328 r-lvilsi~iif~RRip~v~l~kp~iPdikswkEALFvGh-FGPIGVgAly~allar 382 (467)
T KOG4505|consen 328 R-LVILSITIIFIRRIPAVYLMKPLIPDIKSWKEALFVGH-FGPIGVGALYYALLAR 382 (467)
T ss_pred H-HHHHHHHHHHhcccceEEEeccCCcchhhHHHHHHhcc-CCCccHHHHHHHHHHH
Confidence 3 34444444444 443333322221 147999999999 7999998888777664
No 19
>TIGR00773 NhaA Na+/H+ antiporter NhaA. These proteins are members of the NhaA Na+:H+ Antiporter (NhaA) Family (TC. 2.A.33). The Escherichia coli NhaA protein probably functions in the regulation of the internal pH when the external pH is alkaline. It also uses the H+ gradient to expel Na+ from the cell. Its activity is highly pH dependent. Only the E. coli protein is functionally and structurally well characterized.
Probab=99.53 E-value=1.7e-12 Score=139.49 Aligned_cols=271 Identities=15% Similarity=0.155 Sum_probs=170.4
Q ss_pred HHHHHHHHHHHHHHHHHhhccChhHHH---hcCchh---hHHHHHHHHHHHHHHHHHHHHhhccCCcchhhHHHHHHHHH
Q 003798 104 VVRSVGIMAFMYFMFIAGIKMDFTLLK---RCGRKH---VYIAVTGVIIPTATSAAVAFLTRKSMDPELAKVSSIGAITT 177 (794)
Q Consensus 104 ~l~~l~~lgl~~llF~~Gle~d~~~l~---~~~~~~---~~ia~~~~~~p~~l~~~~~~~l~~~~~~~~~~~~~~l~lg~ 177 (794)
....+.+.-+.+|.|.+|+|+..+.+. ++.||+ ..-++.|+++|.++ +..+....+ . ..--+|+
T Consensus 52 l~~wiNDgLMaiFFf~vGlEiKrE~~~GeL~~~~~a~lP~~aA~GGm~vPa~i----y~~~n~~~~-~-----~~~GW~I 121 (373)
T TIGR00773 52 LLHWINDGLMAVFFLLIGLEVKRELLEGALSSLRQAIFPVIAAIGGMIAPALI----YLAFNANDP-I-----TREGWAI 121 (373)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHHH----HhheecCCC-c-----ccCcccc
Confidence 344455566677899999999877765 344444 45677788888743 222222111 0 0011121
Q ss_pred HHhh-ccHHHHHHHHHhcCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 003798 178 SLAV-TSFPVLNPILKDLNLLSSEMGRMAIVTAVIGDAIGINIVIAFEAAKQGEGDSVDAVWYLISLVILLAFICIAVRR 256 (794)
Q Consensus 178 ~ls~-Ts~~vv~~iL~el~l~~s~~g~l~ls~a~v~D~~~~ill~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~r~ 256 (794)
-++. ++|..-...+-- +..+..+....++-|++||+.++++.+++++ +. ....+.......+.+
T Consensus 122 P~ATDiAFalgvlallG-~~vP~~lr~FLl~LAIvDDlgaI~vIA~FYt----~~--i~~~~L~~a~~~~~~-------- 186 (373)
T TIGR00773 122 PAATDIAFALGVMALLG-KRVPLALKIFLLALAIIDDLGAIVIIALFYT----ND--LSMAALLVAAVAIAV-------- 186 (373)
T ss_pred ccHHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHhhHhheeeecC----CC--CCHHHHHHHHHHHHH--------
Confidence 1111 223322222222 3367778899999999999999988777662 22 122233322222211
Q ss_pred HHHHHHHhCCCCCcccchHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCCCCCc----hhHHHHHHHHHHHHHHHH
Q 003798 257 TMLWIVHKTPVGKPVSQGYIVGILLGVLVMGFLTDMFGMAIANGPLWLGLVIPDGPPL----GATLVERTETLIMEIFMP 332 (794)
Q Consensus 257 ~~~~i~~~~~~~~~~~e~~~~~il~~~l~~~~~ae~~G~~~~lgaflaGl~i~~~~~~----~~~l~~kl~~~~~~~~~P 332 (794)
.++.+|.. +++...+..+.+ ++.+++ ...|+|+.+|+|++|+++|...+. .+++++.+++.+..+++|
T Consensus 187 --l~~~~~~~----v~~~~~y~~lgv-llW~~~-~~sGVHatiaGvllGl~iP~~~~~~~~pl~rleh~L~p~v~~lilP 258 (373)
T TIGR00773 187 --LAVLNRCG----VRRLGPYMLVGV-ILWFAV-LKSGVHATLAGVIIGFFIPLKGKKGESPLKRLEHVLHPWVAYLILP 258 (373)
T ss_pred --HHHHHHcC----CchhhHHHHHHH-HHHHHH-HHcCCcHHHHHHHHeeeecccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 12334432 233444444333 333333 799999999999999999985433 345666777779899999
Q ss_pred HH-HHHhcccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHhc----------CCChHHHHHHHHHHHhHHHHH
Q 003798 333 FA-FAVVGMYTDVYAMFEFGWSGLSPLFGMIVTGYISKLLGTLIPSLLC----------QMPFRDSLTLSLMMSLRGQVE 401 (794)
Q Consensus 333 lf-F~~~G~~~dl~~l~~~~~~~~~~~~~i~~~~~l~K~~~~~l~~~~~----------~~~~~e~~~lgl~m~~kG~~~ 401 (794)
+| |+..|.++|...+. .........+++..+++|.+|++..++.. +++|++-..+|++-+.-=+++
T Consensus 259 lFAFanAGv~l~~~~~~---~~~~~v~lgI~lgLvvGK~lGI~~~~~l~~kl~~~~lP~~~~w~~~~gv~~L~GIGFTmS 335 (373)
T TIGR00773 259 LFAFANAGVSLQGVSLN---GLTSMLPLGIILGLLIGKPLGIFLFSWIAVKLKLAKLPEGINFKQIFAVGVLCGIGFTMS 335 (373)
T ss_pred HHHHHhcCeeeecCcch---hhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 99 99999999865544 22223467888888999999999887753 468999999998766666788
Q ss_pred HHHHHhhhh
Q 003798 402 LLLYIHWID 410 (794)
Q Consensus 402 l~~~~~~~~ 410 (794)
+.+.+.+++
T Consensus 336 lfI~~LAf~ 344 (373)
T TIGR00773 336 IFIASLAFG 344 (373)
T ss_pred HHHHHHhcC
Confidence 888888884
No 20
>PRK11175 universal stress protein UspE; Provisional
Probab=99.49 E-value=1e-12 Score=142.37 Aligned_cols=270 Identities=12% Similarity=0.120 Sum_probs=160.4
Q ss_pred ceeEEEeccCCchHHHHHHHHhhCCCCCCCceEEEEEEeeecCCCccccccccccCC--CCCCCcchHHHH-HHHHhhhh
Q 003798 464 LRLVVCVHEEESVAGLINLLEVSCPTVDSPFSIYSLHLIELIGRGIPLLVDYENEEH--SPEYTNDDAIHN-ALKLYSET 540 (794)
Q Consensus 464 lriLv~v~~~~~~~~li~l~~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~--~~~~~~~~~i~~-af~~~~~~ 540 (794)
.|||+|+...++....++.+..++...+ .+++++|.++-.....+.......... .......++.++ ..+.+..
T Consensus 4 ~~ILv~~D~s~~~~~al~~a~~lA~~~~--a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~- 80 (305)
T PRK11175 4 QNILVVIDPNQDDQPALRRAVYLAQRNG--GKITAFLPIYDFSYEMTTLLSPDEREAMRQGVISQRTAWIREQAKPYLD- 80 (305)
T ss_pred ceEEEEcCCCccccHHHHHHHHHHHhcC--CCEEEEEeccCchhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHhh-
Confidence 3799999999998888888877765443 578888987532211110000000000 000001111221 2222221
Q ss_pred cCceEEEEeEEeccCCChhHHHHHHHHhcCCcEEEecCCCCCCCCCCCccccccc-hhHHHHHhhccCCCceEEEecCCC
Q 003798 541 RGELKFNAFTALAPMRSMYQNICELALDNKATLIILPFHKEYPNNLEGTQILRRG-VQSVNIKVLSHAPCSVGVLVDKGN 619 (794)
Q Consensus 541 ~~~v~v~~~~~vs~~~~m~~dI~~~A~~~~a~lIilp~h~~~~~d~~g~~~~~~~-~~~~n~~vl~~ApCsVgIlvdRg~ 619 (794)
.+++++..... ..+.+++|++.|+++++||||+|+|++.. ..+. +++..+++++++||||-+.-++..
T Consensus 81 -~~~~~~~~v~~--~g~~~~~i~~~a~~~~~DLiV~G~~~~~~--------~~~~~~gs~~~~l~~~~~~pvlvv~~~~~ 149 (305)
T PRK11175 81 -AGIPIEIKVVW--HNRPFEAIIQEVIAGGHDLVVKMTHQHDK--------LESVIFTPTDWHLLRKCPCPVLMVKDQDW 149 (305)
T ss_pred -cCCceEEEEec--CCCcHHHHHHHHHhcCCCEEEEeCCCCcH--------HHhhccChhHHHHHhcCCCCEEEeccccc
Confidence 45666654443 24789999999999999999999995521 1222 788899999999999977643211
Q ss_pred CCCCCcccCCCccceEEEEEecCCccH-------HHHHHHHHHHhcCC-CeEEEEEEeeccCCC---------CCchhhh
Q 003798 620 FRNPMHAAGGSMRRHHFVVLFLGGADA-------REALAYADRMVGNL-DVSLTVIRFLSFNHE---------GDDEMEK 682 (794)
Q Consensus 620 ~~~~~~~~~~~~~~~~I~v~f~GG~dD-------reAL~~A~rma~~~-~v~ltvl~~~~~~~~---------~~~~~~~ 682 (794)
. ...+|++++.|++++ ..|+++|.++|+.. +++++++|+.+.... ..++.++
T Consensus 150 ~-----------~~~~Ilva~D~s~~~~~~~~~~~~al~~a~~la~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~ 218 (305)
T PRK11175 150 P-----------EGGKILVAVNVASEEPYHDALNEKLVEEAIDLAEQLNHAEVHLVNAYPVTPINIAIELPEFDPSVYND 218 (305)
T ss_pred C-----------CCCeEEEEeCCCCCccchhHHHHHHHHHHHHHHhhCcCCceEEEEEecCcchhccccccccchhhHHH
Confidence 1 135999999987643 68999999999887 999999999753210 0011111
Q ss_pred h---hHHHHHHHHHhhcCCCCceEEEEEEecChHHHHHHHHhhhc--cCcccEEEEecccCCCCccccccCCCCCCCccc
Q 003798 683 K---LDDGLVTWFWVKNESNERVRYREVVVRNGAETVASIQAVND--EAYCDLWIVGRYQGINGKLLEGLEAWSEDNELG 757 (794)
Q Consensus 683 ~---~d~~~l~~~~~~~~~~~~v~y~e~~v~~~~~~~~~i~~~~~--~~~~DL~iVGr~~~~~~~~~~gl~~w~e~~eLG 757 (794)
+ ..++.++++.++.... ..+..+..|. ....|.+..+ + .||+++|.+++. |+. .-=+|
T Consensus 219 ~~~~~~~~~l~~~~~~~~~~----~~~~~v~~G~-~~~~I~~~a~~~~--~DLIVmG~~~~~------~~~----~~llG 281 (305)
T PRK11175 219 AIRGQHLLAMKALRQKFGID----EEQTHVEEGL-PEEVIPDLAEHLD--AELVILGTVGRT------GLS----AAFLG 281 (305)
T ss_pred HHHHHHHHHHHHHHHHhCCC----hhheeeccCC-HHHHHHHHHHHhC--CCEEEECCCccC------CCc----ceeec
Confidence 1 1123455554443211 1112232332 2223322222 3 899999998643 112 22478
Q ss_pred hhhhhhhccCCCCceeEEEEE
Q 003798 758 VIGDYVASIDFGSTASVLVMQ 778 (794)
Q Consensus 758 ~igd~las~d~~~~~SvLvvq 778 (794)
-..+-++.. .+++||||.
T Consensus 282 S~a~~v~~~---~~~pVLvv~ 299 (305)
T PRK11175 282 NTAEHVIDH---LNCDLLAIK 299 (305)
T ss_pred chHHHHHhc---CCCCEEEEc
Confidence 888888877 778999995
No 21
>PRK14856 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=99.20 E-value=2.6e-09 Score=116.85 Aligned_cols=269 Identities=17% Similarity=0.222 Sum_probs=167.6
Q ss_pred HHHHHHHHHHHHHHHHHhhccChhHHH---hcCchh---hHHHHHHHHHHHHHHHHHHHHhhccCCcchhhHHHHHHHHH
Q 003798 104 VVRSVGIMAFMYFMFIAGIKMDFTLLK---RCGRKH---VYIAVTGVIIPTATSAAVAFLTRKSMDPELAKVSSIGAITT 177 (794)
Q Consensus 104 ~l~~l~~lgl~~llF~~Gle~d~~~l~---~~~~~~---~~ia~~~~~~p~~l~~~~~~~l~~~~~~~~~~~~~~l~lg~ 177 (794)
..+.+.+.-+.+|.|.+|+|+..+.+. ++.|++ ..-++.|+++|.+ ++..+....+ . .--+|+
T Consensus 68 l~~wINDgLMaiFFf~VGLEIKrE~~~GeLs~~rka~lPi~AAlGGmivPAl----IY~~~n~~~~-~------~~GWgI 136 (438)
T PRK14856 68 LHNWIDDVLMALFFLMIGLEIKRELLFGELSSFKKASFPVIAALGGMIAPGL----IYFFLNADTP-S------QHGFGI 136 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHhccHHHHH----HHhheecCCC-c------cCcccc
Confidence 444566666778999999999877664 333444 4567778888874 3333322111 1 111222
Q ss_pred HHhhccHHHHHHHHHhc-CccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 003798 178 SLAVTSFPVLNPILKDL-NLLSSEMGRMAIVTAVIGDAIGINIVIAFEAAKQGEGDSVDAVWYLISLVILLAFICIAVRR 256 (794)
Q Consensus 178 ~ls~Ts~~vv~~iL~el-~l~~s~~g~l~ls~a~v~D~~~~ill~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~r~ 256 (794)
-++ |+.+....++.=+ +..++.+....++-|++||+.++++++++++ +. ....+..++..++.++
T Consensus 137 PmA-TDIAFAlgvLallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFYt----~~--i~~~~L~~a~~~~~~l------- 202 (438)
T PRK14856 137 PMA-TDIAFALGVIMLLGKRVPTALKVFLITLAVADDLGAIVVIALFYT----TN--LKFAWLLGALGVVLVL------- 202 (438)
T ss_pred ccH-HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHhheeeecC----CC--CcHHHHHHHHHHHHHH-------
Confidence 221 2322223333222 2356778889999999999999988877662 22 1233333333222211
Q ss_pred HHHHHHHhCCCCCcccchHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCCCCCc----------------------
Q 003798 257 TMLWIVHKTPVGKPVSQGYIVGILLGVLVMGFLTDMFGMAIANGPLWLGLVIPDGPPL---------------------- 314 (794)
Q Consensus 257 ~~~~i~~~~~~~~~~~e~~~~~il~~~l~~~~~ae~~G~~~~lgaflaGl~i~~~~~~---------------------- 314 (794)
++.+|.. ++....++++.++ .-+....-|+|+.++..++|+++|..++.
T Consensus 203 ---~~ln~~~----v~~~~~Y~~~G~~--lW~~~l~SGVHaTiAGV~lal~iP~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (438)
T PRK14856 203 ---AVLNRLN----VRSLIPYLLLGVL--LWFCVHQSGIHATIAAVVLAFMIPVKIPKDSKNVELLELGKRYAETSSGAL 273 (438)
T ss_pred ---HHHHHcC----CccccHHHHHHHH--HHHHHHHccCcHHHHHHHHHheeecccccccchhhhhhhhhhhhccccccc
Confidence 2233322 2334444444433 33444578999999999999999964322
Q ss_pred ----------------------hhHHHHHHHHHHHHHHHHHH-HHHhcccccccccccccccchhhHHHHHHHHHHHHHH
Q 003798 315 ----------------------GATLVERTETLIMEIFMPFA-FAVVGMYTDVYAMFEFGWSGLSPLFGMIVTGYISKLL 371 (794)
Q Consensus 315 ----------------------~~~l~~kl~~~~~~~~~Plf-F~~~G~~~dl~~l~~~~~~~~~~~~~i~~~~~l~K~~ 371 (794)
.+++++.+++.+..+.+|+| |+..|..++..... ..-.....+++..++||.+
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~pl~rleh~L~p~v~f~IlPlFAfaNAGV~l~~~~~~----~~~pv~lGI~~GLvvGK~l 349 (438)
T PRK14856 274 LTKEQQEILHSIEEKASALQSPLERLEHFLAPISGYFIMPLFAFANAGVSVDSSINL----EVDKVLLGVILGLCLGKPL 349 (438)
T ss_pred cccchhhhhhhhhhcccccCCHHHHHHHhhhhhhHHhhHHHHHhhcCCceeccchhh----ccCcHHHHHHHHHHhcchH
Confidence 14567778888889999999 88999999754322 1112355667777889999
Q ss_pred HHHHHHHhc----------CCChHHHHHHHHHHHhHHHHHHHHHHhhhh
Q 003798 372 GTLIPSLLC----------QMPFRDSLTLSLMMSLRGQVELLLYIHWID 410 (794)
Q Consensus 372 ~~~l~~~~~----------~~~~~e~~~lgl~m~~kG~~~l~~~~~~~~ 410 (794)
|.+..++.. +++|++-...|++-+.-=++++.+++.+++
T Consensus 350 GI~~~s~lavkl~~a~lP~g~~w~~l~gv~~LaGIGFTmSLFIa~LAF~ 398 (438)
T PRK14856 350 GIFLITFISEKLKITARPKGISWWHILGAGLLAGIGFTMSMFISNLAFT 398 (438)
T ss_pred HHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 888776653 578999999998766666788888888884
No 22
>KOG1966 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=99.19 E-value=1.8e-11 Score=135.41 Aligned_cols=363 Identities=16% Similarity=0.148 Sum_probs=235.8
Q ss_pred HHHHHHHHhhcccC--CChhHHHHHHHHhhCccccCCc---h------hhhhccCCCCcHHHHHHHHHHHHHHHHHHHhh
Q 003798 54 CTTSIIRFLLKPLK--QPRVISEMIGGIIVGPSILGRN---K------KFAEAMLPDNSQLVVRSVGIMAFMYFMFIAGI 122 (794)
Q Consensus 54 ~~~~l~~~ll~rl~--~P~ii~~IlaGiilGP~~lg~~---~------~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gl 122 (794)
.++.+..-+.++++ +|.-...|+.|+++|-.+.+.- + .|+-.+.|| ++|-+|+
T Consensus 52 sLaKi~fh~~~~l~~i~PES~lLI~~Gl~lG~ii~~~~~~~~~~L~s~vFFlyLLPP----------------IvlDAGY 115 (670)
T KOG1966|consen 52 SLAKIVFHLMPKLRKIVPESCLLIILGLVLGGIIKALATIAPFFLESDVFFLYLLPP----------------IVLDAGY 115 (670)
T ss_pred HHHHhcccccccccccCchhHHHHHHHHHHHHHHHhhhccccccccccchhhhhcCH----------------HHhcccc
Confidence 34444444455554 6888888999999986543321 1 122223333 7799999
Q ss_pred ccChhHHHhcCchhhHHHHHHHHHHHHHHHHHHHHhhc--cCCcchhhHHHHHHHHHHHhhccHHHHHHHHHhcCccCCh
Q 003798 123 KMDFTLLKRCGRKHVYIAVTGVIIPTATSAAVAFLTRK--SMDPELAKVSSIGAITTSLAVTSFPVLNPILKDLNLLSSE 200 (794)
Q Consensus 123 e~d~~~l~~~~~~~~~ia~~~~~~p~~l~~~~~~~l~~--~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~l~~s~ 200 (794)
-|.-+.+..|...++..++.|.+.-.+...+..|.+.. .+... ......++.|...|..++..+..+..|.. .|.-
T Consensus 116 fMp~r~Ff~NlgtILlfAVvGTi~Na~~~g~sL~~i~~~glf~~~-~glld~LlFgSLIsAVDPVAVLaVFEEih-VNe~ 193 (670)
T KOG1966|consen 116 FMPNRAFFENLGTILLFAVVGTIWNAFTIGASLYAISLSGLFGMS-IGLLDILLFGSLISAVDPVAVLAVFEEIH-VNEV 193 (670)
T ss_pred cCccHHHHhccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCC-chHHHHHHHHHHHHhcCchhhhhhhhhhc-cccE
Confidence 99999999999999999999998865544333333322 12111 22356788889999999888888999988 5677
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCch------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcccch
Q 003798 201 MGRMAIVTAVIGDAIGINIVIAFEAAKQGEGDSV------DAVWYLISLVILLAFICIAVRRTMLWIVHKTPVGKPVSQG 274 (794)
Q Consensus 201 ~g~l~ls~a~v~D~~~~ill~v~~~~~~~~~~~~------~~l~~~~~~~~~~~~~~~v~r~~~~~i~~~~~~~~~~~e~ 274 (794)
+=-++.+++++||.+.+++.-++..+..-++... .....+..+.+.++.++.+..-+.....|.+.+ ++-.
T Consensus 194 LfI~VFGESLlNDaVTVVLY~~f~sf~~ig~~n~~~~d~~~G~~sFfVVslGG~lvGivfafl~sl~tkft~~---vrvi 270 (670)
T KOG1966|consen 194 LFIIVFGESLLNDAVTVVLYNMFISFVEIGSDNLTTIDYVLGVVSFFVVSLGGALVGIVFAFLASLVTKFTKH---VRVL 270 (670)
T ss_pred EEeeeehhhhhcCceEEehHHHHHHHHHhcccceeEeeeecceeEEEEEecCchhHHHHHHHHHHHHHHhhcc---eeee
Confidence 7788999999999999999988777654332210 011111111112222333333333334444432 3345
Q ss_pred HHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCCC-----CCchhHHHHHHHHHHHHHHHHHHHHHhccccccccccc
Q 003798 275 YIVGILLGVLVMGFLTDMFGMAIANGPLWLGLVIPDG-----PPLGATLVERTETLIMEIFMPFAFAVVGMYTDVYAMFE 349 (794)
Q Consensus 275 ~~~~il~~~l~~~~~ae~~G~~~~lgaflaGl~i~~~-----~~~~~~l~~kl~~~~~~~~~PlfF~~~G~~~dl~~l~~ 349 (794)
+.++++.+...++..+|.+++|++++-.+.|+++... ......-.+..-.+.+..-.++.|++.|.++--. -.
T Consensus 271 ePvfif~~pYlaYL~aEm~hlSgIlAii~CG~~m~~Yv~~Nis~~s~~tvky~~K~lss~sEt~IF~fLGvs~v~~-~h- 348 (670)
T KOG1966|consen 271 EPVFIFLLPYLAYLTAEMFHLSGILAIIFCGLCMKKYVEANISQKSATTVKYFMKMLSSLSETVIFMFLGVSTVSS-NH- 348 (670)
T ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhccchhhheeehhhhcCC-cc-
Confidence 5788899999999999999999999999999998763 2222333333444456777788899999876422 11
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHHHhc------CCChHHHHHHHHHHHhHHHHHHHHHHhhhhcc-----ccCCch
Q 003798 350 FGWSGLSPLFGMIVTGYISKLLGTLIPSLLC------QMPFRDSLTLSLMMSLRGQVELLLYIHWIDKL-----IIGVPP 418 (794)
Q Consensus 350 ~~~~~~~~~~~i~~~~~l~K~~~~~l~~~~~------~~~~~e~~~lgl~m~~kG~~~l~~~~~~~~~~-----ii~~~~ 418 (794)
..+|..+.+-++.+.+-|.+++...+++. +++..|-+.++.. +.||.+...+...--... ..-..+
T Consensus 349 --~wd~~Fi~~T~~fc~~~R~lgv~~lt~~~N~fr~~k~~~~DQfimsyG-GLRGAiaF~LV~lid~~~vp~K~~Fvttt 425 (670)
T KOG1966|consen 349 --HWDFAFICLTLVFCLIYRAIGVVVLTWFLNKFRMVKLEFVDQFIMSYG-GLRGAIAFGLVVLIDGAKVPAKNMFVTTT 425 (670)
T ss_pred --eeehhhhhhHHHHHHHHHHHHhhhhhhhhhhhheeeccccceeeeecC-CcchhhheeEEEEeccccCCcccceEeee
Confidence 23445555656667778999988887765 3577787777664 678877765543332222 222334
Q ss_pred hHHHHHHHHHHHHhHHHHHHhhcC
Q 003798 419 FTLLVLSTVVITGIAGPLISFLYD 442 (794)
Q Consensus 419 ~~~lv~~~ll~t~i~~plv~~l~~ 442 (794)
+.++.+++.+..+..-|+++|+--
T Consensus 426 i~VIfFTVflQGiTIkplvk~L~V 449 (670)
T KOG1966|consen 426 IAVIFFTVFLQGITIKPLVKFLKV 449 (670)
T ss_pred eEEEeeeeeecccchHHHHHHHcc
Confidence 556667778888888999999853
No 23
>PRK09560 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=99.18 E-value=5.9e-09 Score=112.48 Aligned_cols=271 Identities=14% Similarity=0.144 Sum_probs=166.5
Q ss_pred HHHHHHHHHHHHHHHHHhhccChhHHH---hcCchh---hHHHHHHHHHHHHHHHHHHHHhhccCCcchhhHHHHHHHHH
Q 003798 104 VVRSVGIMAFMYFMFIAGIKMDFTLLK---RCGRKH---VYIAVTGVIIPTATSAAVAFLTRKSMDPELAKVSSIGAITT 177 (794)
Q Consensus 104 ~l~~l~~lgl~~llF~~Gle~d~~~l~---~~~~~~---~~ia~~~~~~p~~l~~~~~~~l~~~~~~~~~~~~~~l~lg~ 177 (794)
..+.+.+.=+.+|.|.+|+|+..+.+. ++.|++ ..-++.|+++|.++ +..+....+ . ..--+|+
T Consensus 59 l~~wiNDgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lPi~AAlGGmivPAlI----y~~~n~g~~-~-----~~~GWgI 128 (389)
T PRK09560 59 LLHWINDGLMAVFFLLVGLEIKRELLEGQLSSWQQRILPAIAAVGGMVVPALI----YAAFNYNNP-E-----TLRGWAI 128 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHHH----HheeecCCC-c-----ccCcccc
Confidence 344455556677889999999877765 333444 45677788888743 222222111 0 0011222
Q ss_pred HHhhccHHHHHHHHHhc-CccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 003798 178 SLAVTSFPVLNPILKDL-NLLSSEMGRMAIVTAVIGDAIGINIVIAFEAAKQGEGDSVDAVWYLISLVILLAFICIAVRR 256 (794)
Q Consensus 178 ~ls~Ts~~vv~~iL~el-~l~~s~~g~l~ls~a~v~D~~~~ill~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~r~ 256 (794)
-++ |+.+....+++=+ +..+..+....++-|++||+.++++++++++ +.- ...+......++.+ .
T Consensus 129 PmA-TDIAFAlgvL~llG~rvP~~Lr~FLlaLAIvDDlgAI~VIA~FYt----~~i--~~~~L~~a~~~~~~--l----- 194 (389)
T PRK09560 129 PAA-TDIAFALGVLALLGKRVPVSLKVFLLALAIIDDLGAIVIIALFYT----SDL--SLPALALAAIAIAV--L----- 194 (389)
T ss_pred ccH-HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhHhheeeecC----CCC--CHHHHHHHHHHHHH--H-----
Confidence 211 2222222222211 2357778889999999999999988877662 221 23333332222211 1
Q ss_pred HHHHHHHhCCCCCcccchHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCCCCCc------hhHHHHHHHHHHHHHH
Q 003798 257 TMLWIVHKTPVGKPVSQGYIVGILLGVLVMGFLTDMFGMAIANGPLWLGLVIPDGPPL------GATLVERTETLIMEIF 330 (794)
Q Consensus 257 ~~~~i~~~~~~~~~~~e~~~~~il~~~l~~~~~ae~~G~~~~lgaflaGl~i~~~~~~------~~~l~~kl~~~~~~~~ 330 (794)
++.+|.. ++....+..+.++ .-+.-..-|+|+.++..++|+++|..++. .+++++++++.+..+.
T Consensus 195 ---~~ln~~~----v~~~~~Y~~~G~~--lW~~~l~SGvHaTiAGV~la~~iP~~~~~~~~~~pl~rleh~L~p~v~~~I 265 (389)
T PRK09560 195 ---FLLNRLG----VTKLTPYLIVGAI--LWFAVLKSGVHATLAGVVLAFCIPLKGKKGDEESPLHHLEHALHPWVAFAI 265 (389)
T ss_pred ---HHHHHcC----CccchHHHHHHHH--HHHHHHHccccHHHHHHHHHHhccccCCCCCCCCHHHHHHHHhhhhhhhhh
Confidence 2223322 2334455554433 33344578999999999999999974222 3578899999988888
Q ss_pred HHHH-HHHhcccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHhc----------CCChHHHHHHHHHHHhHHH
Q 003798 331 MPFA-FAVVGMYTDVYAMFEFGWSGLSPLFGMIVTGYISKLLGTLIPSLLC----------QMPFRDSLTLSLMMSLRGQ 399 (794)
Q Consensus 331 ~Plf-F~~~G~~~dl~~l~~~~~~~~~~~~~i~~~~~l~K~~~~~l~~~~~----------~~~~~e~~~lgl~m~~kG~ 399 (794)
+|+| |+..|..++-..+. ...-.....+++..++||.+|.+..++.. +++|++-..+|++-+.-=+
T Consensus 266 lPlFAlaNAGV~l~~~~~~---~~~~pv~~gI~~GLv~GK~lGI~~~s~l~vkl~~~~lP~g~~w~~l~gv~~L~GIGFT 342 (389)
T PRK09560 266 LPLFAFANAGVSLAGISLS---SLTSPVPLGIALGLFLGKQVGVFGFSWLAVKLGLAKLPEGANWKQIYGVSVLCGIGFT 342 (389)
T ss_pred HHHHHhhcCCeeecCCcHH---hccCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 9999 88889888432232 11112355667777889999888877653 4689999999987666667
Q ss_pred HHHHHHHhhhh
Q 003798 400 VELLLYIHWID 410 (794)
Q Consensus 400 ~~l~~~~~~~~ 410 (794)
+++.+++.++.
T Consensus 343 mSLFIa~LAF~ 353 (389)
T PRK09560 343 MSLFIGSLAFG 353 (389)
T ss_pred HHHHHHHhhcC
Confidence 88888888883
No 24
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=99.14 E-value=3.4e-10 Score=106.19 Aligned_cols=130 Identities=20% Similarity=0.268 Sum_probs=97.2
Q ss_pred eeEEEeccCCchHHHHHHHHhhCCCCCCCceEEEEEEeeecCCCccccccccccCCCCCCCcchHHHHHHHHhhhhcCce
Q 003798 465 RLVVCVHEEESVAGLINLLEVSCPTVDSPFSIYSLHLIELIGRGIPLLVDYENEEHSPEYTNDDAIHNALKLYSETRGEL 544 (794)
Q Consensus 465 riLv~v~~~~~~~~li~l~~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~~v 544 (794)
|||+|+++.++...+++.+..++... +.+++++|+++.+....+ +.. .......++.++.+.+..+. .++
T Consensus 1 ~ILv~vd~s~~~~~~l~~a~~la~~~--~~~v~ll~v~~~~~~~~~----~~~---~~~~~~~~~~~~~~~~~~~~-~g~ 70 (132)
T cd01988 1 RILVPVANPNTARDLLELAAALARAQ--NGEIIPLNVIEVPNHSSP----SQL---EVNVQRARKLLRQAERIAAS-LGV 70 (132)
T ss_pred CEEEecCCchhHHHHHHHHHHHhhcC--CCeEEEEEEEecCCCCCc----chh---HHHHHHHHHHHHHHHHHhhh-cCC
Confidence 69999999999999999999998653 479999999997654322 100 01122345566555555444 466
Q ss_pred EEEEeEEeccCCChhHHHHHHHHhcCCcEEEecCCCCCCCCCCCccccccc-hhHHHHHhhccCCCceEEE
Q 003798 545 KFNAFTALAPMRSMYQNICELALDNKATLIILPFHKEYPNNLEGTQILRRG-VQSVNIKVLSHAPCSVGVL 614 (794)
Q Consensus 545 ~v~~~~~vs~~~~m~~dI~~~A~~~~a~lIilp~h~~~~~d~~g~~~~~~~-~~~~n~~vl~~ApCsVgIl 614 (794)
++++....+ .+..++||+.|+++++|+|++|+|++... .+. +|+..++|++++||||.|+
T Consensus 71 ~~~~~~~~~--~~~~~~I~~~a~~~~~dlIV~G~~~~~~~--------~~~~lGs~~~~v~~~~~~pvlvv 131 (132)
T cd01988 71 PVHTIIRID--HDIASGILRTAKERQADLIIMGWHGSTSL--------RDRLFGGVIDQVLESAPCDVAVV 131 (132)
T ss_pred ceEEEEEec--CCHHHHHHHHHHhcCCCEEEEecCCCCCc--------cceecCchHHHHHhcCCCCEEEe
Confidence 777777665 37899999999999999999999976432 223 8899999999999999875
No 25
>PRK09561 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=99.13 E-value=8.8e-09 Score=110.92 Aligned_cols=271 Identities=15% Similarity=0.160 Sum_probs=165.5
Q ss_pred HHHHHHHHHHHHHHHHHhhccChhHHH---hcCchh---hHHHHHHHHHHHHHHHHHHHHhhccCCcchhhHHHHHHHHH
Q 003798 104 VVRSVGIMAFMYFMFIAGIKMDFTLLK---RCGRKH---VYIAVTGVIIPTATSAAVAFLTRKSMDPELAKVSSIGAITT 177 (794)
Q Consensus 104 ~l~~l~~lgl~~llF~~Gle~d~~~l~---~~~~~~---~~ia~~~~~~p~~l~~~~~~~l~~~~~~~~~~~~~~l~lg~ 177 (794)
..+.+.+.=+.+|.|.+|+|+..+.+. ++.|++ ..-++.|+++|.++ +..+....+ . ..--+|+
T Consensus 59 l~~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~r~a~lPi~AAlGGmivPAli----y~~~n~~~~-~-----~~~GWaI 128 (388)
T PRK09561 59 LLLWINDGLMAVFFLLIGLEVKRELLEGSLASRRQAALPVIAAIGGMLVPALI----YLLFNYADP-V-----TREGWAI 128 (388)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhchHHHHHH----HhheecCCC-c-----ccCcccc
Confidence 344455556677889999999877764 333444 45677788888743 222322110 0 0011111
Q ss_pred HHhhccHHHHHHHHHhc-CccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 003798 178 SLAVTSFPVLNPILKDL-NLLSSEMGRMAIVTAVIGDAIGINIVIAFEAAKQGEGDSVDAVWYLISLVILLAFICIAVRR 256 (794)
Q Consensus 178 ~ls~Ts~~vv~~iL~el-~l~~s~~g~l~ls~a~v~D~~~~ill~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~r~ 256 (794)
-+ .|+.+....++.=+ +..+..+....++-|++||+.++++++++++ +.. ...+.......+.+ .
T Consensus 129 P~-ATDIAFalgvlallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFYt----~~i--~~~~L~~a~~~~~~--l----- 194 (388)
T PRK09561 129 PA-ATDIAFALGVLALLGSRVPVALKIFLLALAIIDDLGAIVIIALFYT----SDL--SMVSLGVAAVAIAV--L----- 194 (388)
T ss_pred cc-HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHhheeeecC----CCc--cHHHHHHHHHHHHH--H-----
Confidence 11 12222222222222 3357778889999999999999988877662 221 22222222221111 1
Q ss_pred HHHHHHHhCCCCCcccchHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCCCCCc----hhHHHHHHHHHHHHHHHH
Q 003798 257 TMLWIVHKTPVGKPVSQGYIVGILLGVLVMGFLTDMFGMAIANGPLWLGLVIPDGPPL----GATLVERTETLIMEIFMP 332 (794)
Q Consensus 257 ~~~~i~~~~~~~~~~~e~~~~~il~~~l~~~~~ae~~G~~~~lgaflaGl~i~~~~~~----~~~l~~kl~~~~~~~~~P 332 (794)
++.+|.. ++....+.++.++ .-+....-|+|+.++..++|+.+|...+. .+++++++++.+..+.+|
T Consensus 195 ---~~ln~~~----v~~~~~Y~~~G~~--lW~~~l~SGvHaTiAGV~la~~iP~~~~~~~~pl~rleh~L~p~v~~~IlP 265 (388)
T PRK09561 195 ---AVLNLCG----VRRTSVYILVGVV--LWVAVLKSGVHATLAGVIVGFFIPLKEKHGRSPAERLEHGLHPWVAFLILP 265 (388)
T ss_pred ---HHHHHcC----CccchHHHHHHHH--HHHHHHHccccHHHHHHHHHhhccccCCCCCCHHHHHHHHhhhhhhheeHH
Confidence 2223322 2334455554433 33444578999999999999999974221 367899999999999999
Q ss_pred HH-HHHhcccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHhc----------CCChHHHHHHHHHHHhHHHHH
Q 003798 333 FA-FAVVGMYTDVYAMFEFGWSGLSPLFGMIVTGYISKLLGTLIPSLLC----------QMPFRDSLTLSLMMSLRGQVE 401 (794)
Q Consensus 333 lf-F~~~G~~~dl~~l~~~~~~~~~~~~~i~~~~~l~K~~~~~l~~~~~----------~~~~~e~~~lgl~m~~kG~~~ 401 (794)
+| |+..|..++-..+. ...-.....+++..++||.+|.+..++.. +++|++-..+|++-+.-=+++
T Consensus 266 lFAfaNAGV~l~~~~~~---~~~~pv~lgV~~GL~~GK~lGI~~~~~l~vkl~~~~lP~g~~w~~l~gv~~L~GIGFTmS 342 (388)
T PRK09561 266 LFAFANAGVSLQGVTLD---GLTSPLPLGIALGLFIGKPLGIFLFSWLAVKLKLAKLPEGTTFKQIYAVGVLCGIGFTMS 342 (388)
T ss_pred HHHhhcCCeeeccCcHH---hhcCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 99 88888888322222 11112345666777889999888776653 468999999998766666788
Q ss_pred HHHHHhhhh
Q 003798 402 LLLYIHWID 410 (794)
Q Consensus 402 l~~~~~~~~ 410 (794)
+.+.+.+++
T Consensus 343 LFIa~LAF~ 351 (388)
T PRK09561 343 IFIASLAFG 351 (388)
T ss_pred HHHHHHhcC
Confidence 888888884
No 26
>PRK14854 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=99.07 E-value=2.1e-08 Score=107.59 Aligned_cols=271 Identities=13% Similarity=0.134 Sum_probs=163.8
Q ss_pred HHHHHHHHHHHHHHHHHhhccChhHHH---hcCchh---hHHHHHHHHHHHHHHHHHHHHhhccCCcchhhHHHHHHHHH
Q 003798 104 VVRSVGIMAFMYFMFIAGIKMDFTLLK---RCGRKH---VYIAVTGVIIPTATSAAVAFLTRKSMDPELAKVSSIGAITT 177 (794)
Q Consensus 104 ~l~~l~~lgl~~llF~~Gle~d~~~l~---~~~~~~---~~ia~~~~~~p~~l~~~~~~~l~~~~~~~~~~~~~~l~lg~ 177 (794)
..+.+.+.=+.+|.|.+|+|+..+.+. ++.|++ ..-++.|+++|.++=.. +... + . ..--+|+
T Consensus 56 l~~WiNDgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lP~~AAlGGmivPAlIy~~----~n~~-~-~-----~~~GW~I 124 (383)
T PRK14854 56 LMHWINDGLMAIYFLYIGLEIKREIIVGTLSKPSNIITPAIAAFAGLAMPSLIYLS----INHD-I-K-----VINGWAI 124 (383)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHHHHHh----hccC-C-c-----ccCcccc
Confidence 344455555677889999999877664 344444 45677788888753332 2211 1 0 0111122
Q ss_pred HHhh-ccHHHHHHHHHhcCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 003798 178 SLAV-TSFPVLNPILKDLNLLSSEMGRMAIVTAVIGDAIGINIVIAFEAAKQGEGDSVDAVWYLISLVILLAFICIAVRR 256 (794)
Q Consensus 178 ~ls~-Ts~~vv~~iL~el~l~~s~~g~l~ls~a~v~D~~~~ill~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~r~ 256 (794)
-++. ++|++-...+-. +..+..+.-..++-|++||+.++++++++++ +.- ...+.......+. ..++
T Consensus 125 P~ATDIAFAlgvLallG-~rvP~~lrvFLlaLAIvDDlgAI~VIAlFYt----~~i--~~~~L~~A~~~~~--~l~~--- 192 (383)
T PRK14854 125 PSATDIAFTLGILALLG-TRVPAKLKLLVITIAIFDDIAAIAIIAIFYT----KSL--SLLSLSLGTLFIL--AMII--- 192 (383)
T ss_pred ccHHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHHhhhhHhheeeecC----CCc--cHHHHHHHHHHHH--HHHH---
Confidence 1111 223322222222 3357778888889999999999988777652 221 1222222211111 1111
Q ss_pred HHHHHHHhCCCCCcccchHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCCCCCc----hhHHHHHHHHHHHHHHHH
Q 003798 257 TMLWIVHKTPVGKPVSQGYIVGILLGVLVMGFLTDMFGMAIANGPLWLGLVIPDGPPL----GATLVERTETLIMEIFMP 332 (794)
Q Consensus 257 ~~~~i~~~~~~~~~~~e~~~~~il~~~l~~~~~ae~~G~~~~lgaflaGl~i~~~~~~----~~~l~~kl~~~~~~~~~P 332 (794)
+.|+.. ++....++++.++ .-+....-|+|+.++..+.|+++|...+. .+++++++++.+..+.+|
T Consensus 193 ----~nr~~~----v~~~~~Y~~~G~~--lW~~~l~SGvHaTiAGV~~a~~iP~~~~~~~~pl~rleh~L~p~v~~~IlP 262 (383)
T PRK14854 193 ----CNRIFK----INRSSVYVVLGFF--AWFCTIKSGVHATLAGFTTALCIPFRENDKDSPANFMEDSLHPWIIYFILP 262 (383)
T ss_pred ----HHHhcC----CceehHHHHHHHH--HHHHHHHhcccHHHHHHHHHHhcccCCCCCCCHHHHHHHHhhchHHHhhHH
Confidence 122111 2334444444333 33445678999999999999999974221 357888999999999999
Q ss_pred HH-HHHhcccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHhc----------CCChHHHHHHHHHHHhHHHHH
Q 003798 333 FA-FAVVGMYTDVYAMFEFGWSGLSPLFGMIVTGYISKLLGTLIPSLLC----------QMPFRDSLTLSLMMSLRGQVE 401 (794)
Q Consensus 333 lf-F~~~G~~~dl~~l~~~~~~~~~~~~~i~~~~~l~K~~~~~l~~~~~----------~~~~~e~~~lgl~m~~kG~~~ 401 (794)
+| |+..|..++-..+. ...-.....+++..++||.+|.+..++.. +++|++-..+|++-+.-=+++
T Consensus 263 lFA~aNAGV~l~~~~~~---~~~~pv~~GI~~GL~~GK~lGI~~~s~lavkl~~~~lP~g~~w~~l~gv~~L~GIGFTmS 339 (383)
T PRK14854 263 VFAFANAGISFSGISFS---ILFEPITLGIILGLFVGKQLGIFSILAVFKKLKWFKLGESFSNLQLYGISLLCGIGFTMS 339 (383)
T ss_pred HHHhhcCCeeeccCcHH---hhcCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 99 88889888422222 11112345667777889999888776653 468999999999766666788
Q ss_pred HHHHHhhhh
Q 003798 402 LLLYIHWID 410 (794)
Q Consensus 402 l~~~~~~~~ 410 (794)
+.+++.+++
T Consensus 340 LFIa~LAF~ 348 (383)
T PRK14854 340 LFIGVLAFN 348 (383)
T ss_pred HHHHHhhCC
Confidence 888888884
No 27
>PRK14855 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=99.03 E-value=5.1e-08 Score=106.40 Aligned_cols=266 Identities=15% Similarity=0.148 Sum_probs=164.8
Q ss_pred HHHHHHHHHHHHHHHHHhhccChhHHH---hcCchh---hHHHHHHHHHHHHHHHHHHHHhhccCCcchhhHHHHHHHHH
Q 003798 104 VVRSVGIMAFMYFMFIAGIKMDFTLLK---RCGRKH---VYIAVTGVIIPTATSAAVAFLTRKSMDPELAKVSSIGAITT 177 (794)
Q Consensus 104 ~l~~l~~lgl~~llF~~Gle~d~~~l~---~~~~~~---~~ia~~~~~~p~~l~~~~~~~l~~~~~~~~~~~~~~l~lg~ 177 (794)
..+.+.+.-+.+|.|.+|+|+..+.+. ++.|++ ..-++.|+++|.++ +..+....+ . .--+|+
T Consensus 63 l~~wINDgLMaiFFf~VGLEIKrE~l~GeLs~~r~a~lPiiAAlGGmivPAlI----y~~~n~~~~-~------~~GWgI 131 (423)
T PRK14855 63 LEHWVNDGLMAVFFLLVGLEIKRELLIGELSSPRQAALAVVAALGGMLVPAAL----YTALNAGGP-G------ASGWGV 131 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHhchHHHHHH----HheeecCCC-c------cCcccc
Confidence 344455556677889999999877764 344444 44567778888743 333322111 1 111222
Q ss_pred HHhhccHHHHHHHHHhc-CccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 003798 178 SLAVTSFPVLNPILKDL-NLLSSEMGRMAIVTAVIGDAIGINIVIAFEAAKQGEGDSVDAVWYLISLVILLAFICIAVRR 256 (794)
Q Consensus 178 ~ls~Ts~~vv~~iL~el-~l~~s~~g~l~ls~a~v~D~~~~ill~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~r~ 256 (794)
-++ |+.+....+++=+ +..+..+....++-|++||+.++++++++++ +.. ...+..++..++.+
T Consensus 132 PmA-TDIAFAlgvLallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFYt----~~i--~~~~L~~a~~~~~~-------- 196 (423)
T PRK14855 132 PMA-TDIAFALGVLALLGSRVPLGLKVFLTALAIVDDLGAVLVIALFYT----SGL--NLLALLLAALTWAL-------- 196 (423)
T ss_pred ccH-HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhhheeeEeecC----CCC--CHHHHHHHHHHHHH--------
Confidence 221 3333233333222 2356678889999999999999988777662 221 22233322222211
Q ss_pred HHHHHHHhCCCCCcccchHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCCCC-Cc---------------------
Q 003798 257 TMLWIVHKTPVGKPVSQGYIVGILLGVLVMGFLTDMFGMAIANGPLWLGLVIPDGP-PL--------------------- 314 (794)
Q Consensus 257 ~~~~i~~~~~~~~~~~e~~~~~il~~~l~~~~~ae~~G~~~~lgaflaGl~i~~~~-~~--------------------- 314 (794)
.++.+|.. ++....++.+.++ .-+....-|+|+.++..++|+++|..+ +.
T Consensus 197 --l~~ln~~~----v~~~~~Y~~~G~~--lW~~~l~SGVHaTiAGV~lal~iP~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (423)
T PRK14855 197 --ALLAGRLG----VTSLKIYAVLGAL--LWFFVLKSGLHPTVAGVLLALAVPIRRRDPLPYLASLLDAAAPGRPEVVGA 268 (423)
T ss_pred --HHHHHHcC----CccccHHHHHHHH--HHHHHHHhcccHHHHHHHHHHhccccccccchhHHHHHHHhhcccchhhhH
Confidence 12233322 2334444444433 334445789999999999999999741 11
Q ss_pred ---------------hhHHHHHHHHHHHHHHHHHH-HHHhcccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHH
Q 003798 315 ---------------GATLVERTETLIMEIFMPFA-FAVVGMYTDVYAMFEFGWSGLSPLFGMIVTGYISKLLGTLIPSL 378 (794)
Q Consensus 315 ---------------~~~l~~kl~~~~~~~~~Plf-F~~~G~~~dl~~l~~~~~~~~~~~~~i~~~~~l~K~~~~~l~~~ 378 (794)
.+++++++++.+..+.+|+| |+..|..++-..+. .....+++..++||.+|.+..++
T Consensus 269 ~~~~~~~~~~~~~~Pl~rleh~L~p~vaf~IlPlFAfaNAGV~l~~~~~~-------pv~lGI~~GLvvGK~lGI~~~s~ 341 (423)
T PRK14855 269 RLRDLEDLLERAQSPLHRLEHALHPWSTFLILPVFALFNAGVSVSGGGLG-------TVSLGVFLGLLLGKPLGVVGGAW 341 (423)
T ss_pred HHHhhhhhccccCCHHHHHHHHhhhhHHHhhHHHHHhhcCCeeecCCCCC-------cHHHHHHHHHHhcchHHHHHHHH
Confidence 24678888888888999999 88889888533222 23456666777899998888776
Q ss_pred hc----------CCChHHHHHHHHHHHhHHHHHHHHHHhhhh
Q 003798 379 LC----------QMPFRDSLTLSLMMSLRGQVELLLYIHWID 410 (794)
Q Consensus 379 ~~----------~~~~~e~~~lgl~m~~kG~~~l~~~~~~~~ 410 (794)
.. +++|++-..+|++-+.-=++++.+++.+++
T Consensus 342 lavkl~~a~lP~g~~w~~l~gv~~LaGIGFTmSLFIa~LAF~ 383 (423)
T PRK14855 342 LAVRLGLASLPRRVNWLHMLGAGLLAGIGFTMSLFISNLAFA 383 (423)
T ss_pred HHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 53 578999999999766666788888888884
No 28
>PF06965 Na_H_antiport_1: Na+/H+ antiporter 1; InterPro: IPR004670 NhaA is a sodium ion/proton antiporter that uses the proton electrochemical gradient to expel sodium ions from the cytoplasm and functions primarily in the adaptation to high salinity at alkaline pH. NhaA is also believed to be responsible for adaptation to alkaline pH when sodium is available. NhaA is one of the three known sodium ion/proton antiporters in Escherichia coli along with NhaB and ChaA, though there are other mechanisms for Na+ extrusion such as NDH-I complicating the determination of the precise roles of each of the transporters [].; GO: 0006814 sodium ion transport, 0006885 regulation of pH, 0016021 integral to membrane; PDB: 3FI1_A 1ZCD_A.
Probab=98.92 E-value=3.6e-09 Score=113.87 Aligned_cols=272 Identities=17% Similarity=0.240 Sum_probs=152.5
Q ss_pred HHHHHHHHHHHHHHHHHhhccChhHHH---hcCchh---hHHHHHHHHHHHHHHHHHHHHhhccCCcchhhHHHHHHHHH
Q 003798 104 VVRSVGIMAFMYFMFIAGIKMDFTLLK---RCGRKH---VYIAVTGVIIPTATSAAVAFLTRKSMDPELAKVSSIGAITT 177 (794)
Q Consensus 104 ~l~~l~~lgl~~llF~~Gle~d~~~l~---~~~~~~---~~ia~~~~~~p~~l~~~~~~~l~~~~~~~~~~~~~~l~lg~ 177 (794)
..+.+.+.=+.+|.|.+|+|+..+.+. ++.||+ ..-++.|+++|.+ ++..+....+ ...--+|+
T Consensus 55 l~~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~r~a~lP~~AAlGGm~vPal----Iyl~~n~~~~------~~~~GW~I 124 (378)
T PF06965_consen 55 LHHWINDGLMAIFFFVVGLEIKRELLVGELSSPRKAALPIIAALGGMLVPAL----IYLAFNAGGP------EAAHGWAI 124 (378)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSSTTTSHHHHHHHHHHTTTTHH----HHGGG--SST------THHHHTSS
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhCCCCCChhhhhhHHHHHHhcchHHHH----HHheeecCCC------CcCceEEe
Confidence 444556666678899999999877664 344444 3456667777763 2223322111 01111221
Q ss_pred HHhhccHHHHHHHHHhc-CccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 003798 178 SLAVTSFPVLNPILKDL-NLLSSEMGRMAIVTAVIGDAIGINIVIAFEAAKQGEGDSVDAVWYLISLVILLAFICIAVRR 256 (794)
Q Consensus 178 ~ls~Ts~~vv~~iL~el-~l~~s~~g~l~ls~a~v~D~~~~ill~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~r~ 256 (794)
- ..|+.+....++.=+ +..+..+....++-|++||+.++++++++++ +. ....+.......+. ..
T Consensus 125 P-~ATDIAFAlgvlal~G~rvP~~lrvFLlaLAIvDDlgaIlVIA~FYt----~~--i~~~~L~~a~~~~~--~l----- 190 (378)
T PF06965_consen 125 P-MATDIAFALGVLALLGKRVPASLRVFLLALAIVDDLGAILVIALFYT----DG--ISLLWLLLAAAALL--LL----- 190 (378)
T ss_dssp S-S---HHHHHHHHHSS-SSS-SSSHHHHHHHHHHHHHHHHHHHHHHS-----------HHHHHHHHHHHH--HH-----
T ss_pred c-ccccHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhHhheeeeeC----CC--CCHHHHHHHHHHHH--HH-----
Confidence 1 123333333343322 3356678899999999999999998887763 11 12222222222111 11
Q ss_pred HHHHHHHhCCCCCcccchHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCCCCCc--------hhHHHHHHHHHHHH
Q 003798 257 TMLWIVHKTPVGKPVSQGYIVGILLGVLVMGFLTDMFGMAIANGPLWLGLVIPDGPPL--------GATLVERTETLIME 328 (794)
Q Consensus 257 ~~~~i~~~~~~~~~~~e~~~~~il~~~l~~~~~ae~~G~~~~lgaflaGl~i~~~~~~--------~~~l~~kl~~~~~~ 328 (794)
+..+|.. ++....+..+.+ ..-+....-|+|+.++..+.|+.+|..++. -+++++++++.++.
T Consensus 191 ---~~l~r~~----v~~~~~Y~~~G~--~lW~~~l~SGvHaTiAGV~~al~iP~~~~~~~~~~~~pl~rle~~L~p~v~~ 261 (378)
T PF06965_consen 191 ---FVLNRLG----VRSLWPYLLLGI--LLWYAVLKSGVHATIAGVLLALFIPARPRAGEREAESPLERLEHALHPWVAF 261 (378)
T ss_dssp ---HHHHHTT-------THHHHHHHH--HHHHHTTTSHHHHHHHHHHHHHHS---GGGS----S-HHHHHHHHHHHHHHH
T ss_pred ---HHHHHCC----CceehHHHHHHH--HHHHHHHHcCCCHHHHHHHHheeeeccCCCCcccCCCHHHHHHHHhhhhhhh
Confidence 2233322 223444443333 233444678999999999999999985443 24888999999999
Q ss_pred HHHHHH-HHHhcccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHhc----------CCChHHHHHHHHHHHhH
Q 003798 329 IFMPFA-FAVVGMYTDVYAMFEFGWSGLSPLFGMIVTGYISKLLGTLIPSLLC----------QMPFRDSLTLSLMMSLR 397 (794)
Q Consensus 329 ~~~Plf-F~~~G~~~dl~~l~~~~~~~~~~~~~i~~~~~l~K~~~~~l~~~~~----------~~~~~e~~~lgl~m~~k 397 (794)
+.+|+| |+..|..++-..+. ...-.....+++..++||.+|.+..++.. +++|++-..+|++-+.-
T Consensus 262 ~IlPlFAlaNAGV~l~~~~~~---~~~~pv~lGI~~GLvvGK~lGI~~~~~la~kl~~~~lP~~~~w~~l~gv~~LaGIG 338 (378)
T PF06965_consen 262 VILPLFALANAGVSLSGSSLG---DLTSPVTLGIILGLVVGKPLGIFLFSWLAVKLGLARLPDGVSWRHLYGVGLLAGIG 338 (378)
T ss_dssp THHHHHHHHHS----SSS------THHHHSSTTTTHHHHHTTGGGSTTTTTTTSS-TTT----S--GGGGTTHHHHTT--
T ss_pred hhHHhHhheeCceEEecCchH---hhhChHHHHHHHHHHcccchhhhhHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHH
Confidence 999999 88999988865443 11111233445566788999888776543 46788888888865555
Q ss_pred HHHHHHHHHhhhhc
Q 003798 398 GQVELLLYIHWIDK 411 (794)
Q Consensus 398 G~~~l~~~~~~~~~ 411 (794)
=++++.+++.+++.
T Consensus 339 FTmSLFIa~LAF~~ 352 (378)
T PF06965_consen 339 FTMSLFIAGLAFDD 352 (378)
T ss_dssp HHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHcCC
Confidence 67888888888876
No 29
>COG3004 NhaA Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=98.84 E-value=9.3e-07 Score=91.55 Aligned_cols=263 Identities=16% Similarity=0.177 Sum_probs=158.6
Q ss_pred HHHHHHHHhhccChhHHH---hcCchh---hHHHHHHHHHHHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHhhccHHH
Q 003798 113 FMYFMFIAGIKMDFTLLK---RCGRKH---VYIAVTGVIIPTATSAAVAFLTRKSMDPELAKVSSIGAITTSLAVTSFPV 186 (794)
Q Consensus 113 l~~llF~~Gle~d~~~l~---~~~~~~---~~ia~~~~~~p~~l~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~v 186 (794)
...+.+.+|+|+..+.+. ++++++ ..-++.|++.|.+ ++.++....+..... ++ +-+.|+.+.
T Consensus 71 MAvFFl~iGLEvKrEll~G~L~s~~~a~~P~iAA~GGmi~PAl----iy~~~n~~~p~~~~G------Wa-IP~ATDiAF 139 (390)
T COG3004 71 MAVFFLLIGLEVKRELLEGQLSSWRNAAFPVIAAIGGMIAPAL----IYLALNAGDPATLEG------WA-IPMATDIAF 139 (390)
T ss_pred HHHHHHHHHHHHHHHHHcccccCchhhhhHHHHHhccchhhhh----HhheeecCChhhhcC------cC-cccHHHHHH
Confidence 345778899999988775 444444 3445566777653 233332221100000 11 112233333
Q ss_pred HHHHHHhc-CccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 003798 187 LNPILKDL-NLLSSEMGRMAIVTAVIGDAIGINIVIAFEAAKQGEGDSVDAVWYLISLVILLAFICIAVRRTMLWIVHKT 265 (794)
Q Consensus 187 v~~iL~el-~l~~s~~g~l~ls~a~v~D~~~~ill~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~r~~~~~i~~~~ 265 (794)
...+++=+ +..++.+.-..++-|++||+-++++.+++.+ .. .+..+...+.++. .... ..+|.
T Consensus 140 AlGvlaLLG~rVP~sLKiFLlaLAI~DDlgAIvIIAlFYt----~~--Ls~~al~~a~~~i--~vL~--------~lN~~ 203 (390)
T COG3004 140 ALGVLALLGSRVPLSLKIFLLALAIIDDLGAIVIIALFYT----TD--LSMAALGIAALAI--AVLA--------VLNRL 203 (390)
T ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHhhcchhhhhhhhhc----CC--ccHHHHHHHHHHH--HHHH--------HHHHh
Confidence 33333333 3467888889999999999999988877763 11 1122222221111 1111 11221
Q ss_pred CCCCcccchHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCCCCC----chhHHHHHHHHHHHHHHHHHH-HHHhcc
Q 003798 266 PVGKPVSQGYIVGILLGVLVMGFLTDMFGMAIANGPLWLGLVIPDGPP----LGATLVERTETLIMEIFMPFA-FAVVGM 340 (794)
Q Consensus 266 ~~~~~~~e~~~~~il~~~l~~~~~ae~~G~~~~lgaflaGl~i~~~~~----~~~~l~~kl~~~~~~~~~Plf-F~~~G~ 340 (794)
. ++....+++...++-.+. ..-|+|..++..+.|+.+|-..+ --+++++.+.+.+..+.+|+| |...|.
T Consensus 204 ~----v~~l~~Y~~~gviLW~~v--lkSGVHATLAGVi~~f~IPl~~k~~~spl~~leh~L~pwvaf~IlPlFaFaNAGv 277 (390)
T COG3004 204 G----VRRLSPYLLVGVILWIAV--LKSGVHATLAGVILAFFIPLKTKEGESPLERLEHALHPWVAFFILPLFAFANAGV 277 (390)
T ss_pred C----chhhhHHHHHHHHHHHHH--HHhhhHHHHHHHHHHeeeeccCCCCCCcHHHHHHHhhhhHHHHHHHHHHHccCCc
Confidence 1 122334444444443333 46799999999999999995422 246788888899999999999 888898
Q ss_pred cccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHhc----------CCChHHHHHHHHHHHhHHHHHHHHHHhhhh
Q 003798 341 YTDVYAMFEFGWSGLSPLFGMIVTGYISKLLGTLIPSLLC----------QMPFRDSLTLSLMMSLRGQVELLLYIHWID 410 (794)
Q Consensus 341 ~~dl~~l~~~~~~~~~~~~~i~~~~~l~K~~~~~l~~~~~----------~~~~~e~~~lgl~m~~kG~~~l~~~~~~~~ 410 (794)
+++=-.+. ...-.....+++..+++|.+|.+..++.. +.+|++-...+++-+.-=.+++.+...+++
T Consensus 278 sl~g~~~~---~l~s~l~lgI~lGL~~GKplGIf~fs~lAvkl~lA~lP~g~~~~qi~~v~iLcGIGFTMSlFI~~LAf~ 354 (390)
T COG3004 278 SLQGVSLS---GLTSPLTLGIILGLFLGKPLGIFLFSWLAVKLKLAKLPEGISWKQIYGVSILCGIGFTMSLFIASLAFG 354 (390)
T ss_pred cccccccc---ccccchHHHHHHHHHhcCcchhhhhHHHHHHhhhccCCCCCCHHHHHHHHHHHhhhHHHHHHHHHHhcC
Confidence 87722222 11223356677778899999988877653 568999888888666656778888888775
Q ss_pred c
Q 003798 411 K 411 (794)
Q Consensus 411 ~ 411 (794)
.
T Consensus 355 ~ 355 (390)
T COG3004 355 S 355 (390)
T ss_pred C
Confidence 4
No 30
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=98.46 E-value=9.8e-07 Score=84.48 Aligned_cols=136 Identities=15% Similarity=0.151 Sum_probs=85.0
Q ss_pred eeEEEeccCCchHHHHHHHHhhCCCCCCCceEEEEEEeeecCCCcccccc--ccccC-CCCCCCcchHHHHHHHHhhhhc
Q 003798 465 RLVVCVHEEESVAGLINLLEVSCPTVDSPFSIYSLHLIELIGRGIPLLVD--YENEE-HSPEYTNDDAIHNALKLYSETR 541 (794)
Q Consensus 465 riLv~v~~~~~~~~li~l~~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~--~~~~~-~~~~~~~~~~i~~af~~~~~~~ 541 (794)
+||++++..++....++.+..++...+ ..++++|+++.+... +.... ..... ........++.++.+.+..+.
T Consensus 1 ~ILVavD~S~~s~~al~~a~~~a~~~~--~~l~ll~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~- 76 (146)
T cd01989 1 SVAVAVDKDKKSKNALKWALDNLATKG--QTIVLVHVHPPITSI-PSSSGKLEVASAYKQEEDKEAKELLLPYRCFCSR- 76 (146)
T ss_pred CEEEEecCccccHHHHHHHHHhccCCC--CcEEEEEeccCcccC-CCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhh-
Confidence 489999999999999999988765543 688999998753211 10000 00000 000011123333322222111
Q ss_pred CceEEEEeEEeccCCChhHHHHHHHHhcCCcEEEecCCCCCCCCCCCccccccc-hh-HHHHHhhccCC--CceEEE
Q 003798 542 GELKFNAFTALAPMRSMYQNICELALDNKATLIILPFHKEYPNNLEGTQILRRG-VQ-SVNIKVLSHAP--CSVGVL 614 (794)
Q Consensus 542 ~~v~v~~~~~vs~~~~m~~dI~~~A~~~~a~lIilp~h~~~~~d~~g~~~~~~~-~~-~~n~~vl~~Ap--CsVgIl 614 (794)
.++.++...... .+..+.|++.|++.++|+|+||-|++... .+. ++ ++-++|+++|| |||-|.
T Consensus 77 ~~~~~~~~~~~g--~~~~~~I~~~a~~~~~dlIV~Gs~g~~~l--------~~~~~gssva~~Vi~~a~~~c~Vlvv 143 (146)
T cd01989 77 KGVQCEDVVLED--DDVAKAIVEYVADHGITKLVMGASSDNHF--------SMKFKKSDVASSVLKEAPDFCTVYVV 143 (146)
T ss_pred cCCeEEEEEEeC--CcHHHHHHHHHHHcCCCEEEEeccCCCce--------eecccCCchhHHHHhcCCCCceEEEE
Confidence 345665554432 37899999999999999999999966321 223 55 59999999999 999664
No 31
>PRK15456 universal stress protein UspG; Provisional
Probab=98.40 E-value=1.8e-06 Score=82.43 Aligned_cols=134 Identities=16% Similarity=0.125 Sum_probs=83.6
Q ss_pred ceeEEEeccC--CchHHHHHHHHhhCCCCCCCceEEEEEEeeecCCCccccccccccCCCCCCCcchHHHHHHHHhhhhc
Q 003798 464 LRLVVCVHEE--ESVAGLINLLEVSCPTVDSPFSIYSLHLIELIGRGIPLLVDYENEEHSPEYTNDDAIHNALKLYSETR 541 (794)
Q Consensus 464 lriLv~v~~~--~~~~~li~l~~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~ 541 (794)
.|||+|++.. ++....++.+..++.. . .+++++|+++-... .. ................+...+.++++.+..
T Consensus 3 ~~ILv~vD~S~~~~s~~al~~A~~la~~-~--~~l~llhv~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 77 (142)
T PRK15456 3 KTIIMPVDVFEMELSDKAVRHAEFLAQD-D--GVIHLLHVLPGSAS-LS-LHRFAADVRRFEEHLQHEAEERLQTMVSHF 77 (142)
T ss_pred ccEEEeccCCchhHHHHHHHHHHHHHhc-C--CeEEEEEEecCccc-cc-ccccccchhhHHHHHHHHHHHHHHHHHHHh
Confidence 4799999987 4778888888777643 2 37999999864321 00 000000000000001122222333333221
Q ss_pred --CceEEEEeEEeccCCChhHHHHHHHHhcCCcEEEecCCCCCCCCCCCccccccc-hhHHHHHhhccCCCceEEE
Q 003798 542 --GELKFNAFTALAPMRSMYQNICELALDNKATLIILPFHKEYPNNLEGTQILRRG-VQSVNIKVLSHAPCSVGVL 614 (794)
Q Consensus 542 --~~v~v~~~~~vs~~~~m~~dI~~~A~~~~a~lIilp~h~~~~~d~~g~~~~~~~-~~~~n~~vl~~ApCsVgIl 614 (794)
..++++..... .+..++|++.|+++++||||||.|++. ..+. +|++.++|++++||||-|.
T Consensus 78 ~~~~~~v~~~v~~---G~~~~~I~~~a~~~~~DLIVmG~~g~~---------~~~~llGS~a~~v~~~a~~pVLvV 141 (142)
T PRK15456 78 TIDPSRIKQHVRF---GSVRDEVNELAEELGADVVVIGSRNPS---------ISTHLLGSNASSVIRHANLPVLVV 141 (142)
T ss_pred CCCCcceEEEEcC---CChHHHHHHHHhhcCCCEEEEcCCCCC---------ccceecCccHHHHHHcCCCCEEEe
Confidence 34566655544 478999999999999999999999541 1223 8999999999999998764
No 32
>PRK15005 universal stress protein F; Provisional
Probab=98.40 E-value=2.4e-06 Score=81.51 Aligned_cols=136 Identities=21% Similarity=0.162 Sum_probs=81.5
Q ss_pred ceeEEEeccCCc--hHHHHHHHHhhCCCCCCCceEEEEEEeeecCCCccccccccccCCCCCCCcchHHHHHHHHhhhhc
Q 003798 464 LRLVVCVHEEES--VAGLINLLEVSCPTVDSPFSIYSLHLIELIGRGIPLLVDYENEEHSPEYTNDDAIHNALKLYSETR 541 (794)
Q Consensus 464 lriLv~v~~~~~--~~~li~l~~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~ 541 (794)
.+||+|++..++ ....++.+..++...+ .+++++|+++............... .+......++..+.++++.+..
T Consensus 3 ~~ILv~~D~s~~~~~~~a~~~a~~la~~~~--~~l~ll~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~ 79 (144)
T PRK15005 3 RTILVPIDISDSELTQRVISHVEAEAKIDD--AEVHFLTVIPSLPYYASLGLAYSAE-LPAMDDLKAEAKSQLEEIIKKF 79 (144)
T ss_pred ccEEEecCCCchhHHHHHHHHHHHHHhccC--CeEEEEEEEccCccccccccccccc-chHHHHHHHHHHHHHHHHHHHh
Confidence 369999998887 3567777766654433 6889999997432111100000000 0000001122223333333322
Q ss_pred --CceEEEEeEEeccCCChhHHHHHHHHhcCCcEEEecCCCCCCCCCCCccccccc-hhHHHHHhhccCCCceEEE
Q 003798 542 --GELKFNAFTALAPMRSMYQNICELALDNKATLIILPFHKEYPNNLEGTQILRRG-VQSVNIKVLSHAPCSVGVL 614 (794)
Q Consensus 542 --~~v~v~~~~~vs~~~~m~~dI~~~A~~~~a~lIilp~h~~~~~d~~g~~~~~~~-~~~~n~~vl~~ApCsVgIl 614 (794)
.+++++....- .+..+.|++.|+++++|||++|.|+. | . .+. ++++..+|++++||||-|.
T Consensus 80 ~~~~~~~~~~v~~---G~p~~~I~~~a~~~~~DLIV~Gs~~~------~-~--~~~llGS~a~~vl~~a~cpVlvV 143 (144)
T PRK15005 80 KLPTDRVHVHVEE---GSPKDRILELAKKIPADMIIIASHRP------D-I--TTYLLGSNAAAVVRHAECSVLVV 143 (144)
T ss_pred CCCCCceEEEEeC---CCHHHHHHHHHHHcCCCEEEEeCCCC------C-c--hheeecchHHHHHHhCCCCEEEe
Confidence 33455544433 57889999999999999999998832 1 1 223 8899999999999999764
No 33
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=98.31 E-value=8.7e-06 Score=77.89 Aligned_cols=130 Identities=12% Similarity=0.088 Sum_probs=81.1
Q ss_pred EEEEEecCCccHHHHHHHHHHHhcCCCeEEEEEEeeccCCCCC--c----------hhhhhhHHHHHHHHHhhcCCCCce
Q 003798 635 HFVVLFLGGADAREALAYADRMVGNLDVSLTVIRFLSFNHEGD--D----------EMEKKLDDGLVTWFWVKNESNERV 702 (794)
Q Consensus 635 ~I~v~f~GG~dDreAL~~A~rma~~~~v~ltvl~~~~~~~~~~--~----------~~~~~~d~~~l~~~~~~~~~~~~v 702 (794)
+|++++.|.+..+.|+++|.++++..+.+++++|++++..... . ++.++..++.++++..... ...+
T Consensus 1 ~ILVavD~S~~s~~al~~a~~~a~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~ 79 (146)
T cd01989 1 SVAVAVDKDKKSKNALKWALDNLATKGQTIVLVHVHPPITSIPSSSGKLEVASAYKQEEDKEAKELLLPYRCFCS-RKGV 79 (146)
T ss_pred CEEEEecCccccHHHHHHHHHhccCCCCcEEEEEeccCcccCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCC
Confidence 4899999999999999999999999999999999986422110 0 0112233455666554432 1234
Q ss_pred EEEEEEecChHHHHHHHHhhhccCcccEEEEecccCCCCccccccCCCCCCCccc-hhhhhhhccCCCCc--eeEEEEEe
Q 003798 703 RYREVVVRNGAETVASIQAVNDEAYCDLWIVGRYQGINGKLLEGLEAWSEDNELG-VIGDYVASIDFGST--ASVLVMQQ 779 (794)
Q Consensus 703 ~y~e~~v~~~~~~~~~i~~~~~~~~~DL~iVGr~~~~~~~~~~gl~~w~e~~eLG-~igd~las~d~~~~--~SvLvvqq 779 (794)
.+...++..+. ..+.|-+.+++.+.||+++|++++. | |.. --+| -+.+.+.-. ++ ++|||||.
T Consensus 80 ~~~~~~~~g~~-~~~~I~~~a~~~~~dlIV~Gs~g~~------~---l~~-~~~gssva~~Vi~~---a~~~c~Vlvv~~ 145 (146)
T cd01989 80 QCEDVVLEDDD-VAKAIVEYVADHGITKLVMGASSDN------H---FSM-KFKKSDVASSVLKE---APDFCTVYVVSK 145 (146)
T ss_pred eEEEEEEeCCc-HHHHHHHHHHHcCCCEEEEeccCCC------c---eee-cccCCchhHHHHhc---CCCCceEEEEeC
Confidence 45445554322 2222322222211699999998643 1 221 1355 688888876 56 89999984
No 34
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=98.30 E-value=2.3e-06 Score=81.76 Aligned_cols=134 Identities=9% Similarity=0.036 Sum_probs=81.1
Q ss_pred ceeEEEeccCCchHHHHHHHHhhCCCCCCCceEEEEEEeeecCCCccccccccccCCCCCCCcchHHHHHHHHhhhhcCc
Q 003798 464 LRLVVCVHEEESVAGLINLLEVSCPTVDSPFSIYSLHLIELIGRGIPLLVDYENEEHSPEYTNDDAIHNALKLYSETRGE 543 (794)
Q Consensus 464 lriLv~v~~~~~~~~li~l~~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~~ 543 (794)
.|||++++..++....++.+..++...+ ..++++|+.+-.....+... . ...........++..+.++++.+. .+
T Consensus 4 ~~ILvavD~S~~s~~al~~a~~la~~~~--a~l~ll~v~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~l~~~~~~-~~ 78 (144)
T PRK15118 4 KHILIAVDLSPESKVLVEKAVSMARPYN--AKVSLIHVDVNYSDLYTGLI-D-VNLGDMQKRISEETHHALTELSTN-AG 78 (144)
T ss_pred eEEEEEccCChhHHHHHHHHHHHHHhhC--CEEEEEEEccChhhhhhhhh-h-cchHHHHHHHHHHHHHHHHHHHHh-CC
Confidence 4799999999998888888877764433 58899998421100000000 0 000000001122222334444333 33
Q ss_pred eEEEEeEEeccCCChhHHHHHHHHhcCCcEEEecCCCCCCCCCCCccccccchhHHHHHhhccCCCceEEE
Q 003798 544 LKFNAFTALAPMRSMYQNICELALDNKATLIILPFHKEYPNNLEGTQILRRGVQSVNIKVLSHAPCSVGVL 614 (794)
Q Consensus 544 v~v~~~~~vs~~~~m~~dI~~~A~~~~a~lIilp~h~~~~~d~~g~~~~~~~~~~~n~~vl~~ApCsVgIl 614 (794)
+++..... ...+.++.|++.|++.++|||++|.|++ + .+.++++.++|+++|||||-|.
T Consensus 79 ~~~~~~~~--~~G~p~~~I~~~a~~~~~DLIV~Gs~~~------~----~~~lgSva~~v~~~a~~pVLvv 137 (144)
T PRK15118 79 YPITETLS--GSGDLGQVLVDAIKKYDMDLVVCGHHQD------F----WSKLMSSARQLINTVHVDMLIV 137 (144)
T ss_pred CCceEEEE--EecCHHHHHHHHHHHhCCCEEEEeCccc------H----HHHHHHHHHHHHhhCCCCEEEe
Confidence 44322221 1357899999999999999999999932 1 1126799999999999999775
No 35
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=98.29 E-value=4.6e-06 Score=77.39 Aligned_cols=121 Identities=15% Similarity=0.087 Sum_probs=85.0
Q ss_pred eeEEEeccCCchHHHHHHHHhhCCCCCCCceEEEEEEeeecCCCccccccccccCCCCCCCcchHHHHHHHHhhhhcCce
Q 003798 465 RLVVCVHEEESVAGLINLLEVSCPTVDSPFSIYSLHLIELIGRGIPLLVDYENEEHSPEYTNDDAIHNALKLYSETRGEL 544 (794)
Q Consensus 465 riLv~v~~~~~~~~li~l~~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~~v 544 (794)
|||+|+...+....+++.+..++... ...++++|+++-.. .+ .....++.++.+.+..+. .++
T Consensus 1 ~Ilv~vd~s~~s~~al~~a~~la~~~--~~~l~ll~v~~~~~--~~------------~~~~~~~~l~~~~~~~~~-~~~ 63 (124)
T cd01987 1 RILVCISGGPNAERLIRRAARLADRL--KAPWYVVYVETPRL--NR------------LSEAERRRLAEALRLAEE-LGA 63 (124)
T ss_pred CEEEEECCCcchHHHHHHHHHHHHHh--CCCEEEEEEecCcc--cc------------CCHHHHHHHHHHHHHHHH-cCC
Confidence 68999999999999999998887654 46889999886211 10 011224445444444433 233
Q ss_pred EEEEeEEeccCCChhHHHHHHHHhcCCcEEEecCCCCCCCCCCCccccccc-hhHHHHHhhccC-CCceEEE
Q 003798 545 KFNAFTALAPMRSMYQNICELALDNKATLIILPFHKEYPNNLEGTQILRRG-VQSVNIKVLSHA-PCSVGVL 614 (794)
Q Consensus 545 ~v~~~~~vs~~~~m~~dI~~~A~~~~a~lIilp~h~~~~~d~~g~~~~~~~-~~~~n~~vl~~A-pCsVgIl 614 (794)
+ ..+..+ .+..+.|++.+++.++|+|++|+|++... .+. +++..++|+++| ||+|-|.
T Consensus 64 ~--~~~~~~--~~~~~~I~~~~~~~~~dllviG~~~~~~~--------~~~~~Gs~~~~v~~~a~~~~v~v~ 123 (124)
T cd01987 64 E--VVTLPG--DDVAEAIVEFAREHNVTQIVVGKSRRSRW--------RELFRGSLVDRLLRRAGNIDVHIV 123 (124)
T ss_pred E--EEEEeC--CcHHHHHHHHHHHcCCCEEEeCCCCCchH--------HHHhcccHHHHHHHhCCCCeEEEe
Confidence 3 233333 57889999999999999999999966321 223 889999999999 9998664
No 36
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=98.28 E-value=9.2e-07 Score=82.70 Aligned_cols=132 Identities=20% Similarity=0.181 Sum_probs=84.1
Q ss_pred ceeEEEeccCCchHHHHHHHHhhCCCCCCCceEEEEEEeeecCCCccccccccccCCCCCCCcchHHHHHH----HHhhh
Q 003798 464 LRLVVCVHEEESVAGLINLLEVSCPTVDSPFSIYSLHLIELIGRGIPLLVDYENEEHSPEYTNDDAIHNAL----KLYSE 539 (794)
Q Consensus 464 lriLv~v~~~~~~~~li~l~~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~~i~~af----~~~~~ 539 (794)
.|||+|+.+.++...+++.+..++... ...++++|+++.............. .....+...... +....
T Consensus 3 ~~Ilv~~d~~~~~~~al~~a~~la~~~--~~~i~~l~v~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 75 (140)
T PF00582_consen 3 KRILVAIDGSEESRRALRFALELAKRS--GAEITLLHVIPPPPQYSFSAAEDEE-----SEEEAEEEEQARQAEAEEAEA 75 (140)
T ss_dssp SEEEEEESSSHHHHHHHHHHHHHHHHH--TCEEEEEEEEESCHCHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEECCCHHHHHHHHHHHHHHHhh--CCeEEEEEeeccccccccccccccc-----cccccchhhhhhhHHHHHHhh
Confidence 489999999999999999887776543 3789999999865432211100000 000000000000 00111
Q ss_pred hcCceEEEEeEEeccCCChhHHHHHHHHhcCCcEEEecCCCCCCCCCCCccccccc-hhHHHHHhhccCCCceEEE
Q 003798 540 TRGELKFNAFTALAPMRSMYQNICELALDNKATLIILPFHKEYPNNLEGTQILRRG-VQSVNIKVLSHAPCSVGVL 614 (794)
Q Consensus 540 ~~~~v~v~~~~~vs~~~~m~~dI~~~A~~~~a~lIilp~h~~~~~d~~g~~~~~~~-~~~~n~~vl~~ApCsVgIl 614 (794)
. ........... .+..+.|++.+++.++|+||+|.|++... .+. ++++.+++++++||||-|+
T Consensus 76 ~-~~~~~~~~~~~---~~~~~~i~~~~~~~~~dliv~G~~~~~~~--------~~~~~gs~~~~l~~~~~~pVlvv 139 (140)
T PF00582_consen 76 E-GGIVIEVVIES---GDVADAIIEFAEEHNADLIVMGSRGRSGL--------ERLLFGSVAEKLLRHAPCPVLVV 139 (140)
T ss_dssp H-TTSEEEEEEEE---SSHHHHHHHHHHHTTCSEEEEESSSTTST--------TTSSSHHHHHHHHHHTSSEEEEE
T ss_pred h-ccceeEEEEEe---eccchhhhhccccccceeEEEeccCCCCc--------cCCCcCCHHHHHHHcCCCCEEEe
Confidence 1 23333333332 48999999999999999999999975221 123 8999999999999999775
No 37
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=98.27 E-value=1.2e-05 Score=75.16 Aligned_cols=129 Identities=16% Similarity=0.155 Sum_probs=79.3
Q ss_pred EEEEEecCCccHHHHHHHHHHHhcCCCeEEEEEEeeccCCCCC---chhhhhhHHHHHHHHHhhcCCCCceEEEEEEecC
Q 003798 635 HFVVLFLGGADAREALAYADRMVGNLDVSLTVIRFLSFNHEGD---DEMEKKLDDGLVTWFWVKNESNERVRYREVVVRN 711 (794)
Q Consensus 635 ~I~v~f~GG~dDreAL~~A~rma~~~~v~ltvl~~~~~~~~~~---~~~~~~~d~~~l~~~~~~~~~~~~v~y~e~~v~~ 711 (794)
||+++..|.++.+.++++|.+|++.++.+++++|+.+...... .+...+..++.++.+...... ..+.....+..+
T Consensus 1 ~ILv~vd~s~~~~~~l~~a~~la~~~~~~v~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~ 79 (132)
T cd01988 1 RILVPVANPNTARDLLELAAALARAQNGEIIPLNVIEVPNHSSPSQLEVNVQRARKLLRQAERIAAS-LGVPVHTIIRID 79 (132)
T ss_pred CEEEecCCchhHHHHHHHHHHHhhcCCCeEEEEEEEecCCCCCcchhHHHHHHHHHHHHHHHHHhhh-cCCceEEEEEec
Confidence 5899999999999999999999999999999999986432111 111222333444444433211 112222222222
Q ss_pred hHHHHHHHHhhhccCcccEEEEecccCCCCccccccCCCCCCCccchhhhhhhccCCCCceeEEEEE
Q 003798 712 GAETVASIQAVNDEAYCDLWIVGRYQGINGKLLEGLEAWSEDNELGVIGDYVASIDFGSTASVLVMQ 778 (794)
Q Consensus 712 ~~~~~~~i~~~~~~~~~DL~iVGr~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~~~SvLvvq 778 (794)
+ +....|.+..++.+.||+++|.+++.. | ...-+|..-+-+... ++++||||+
T Consensus 80 ~-~~~~~I~~~a~~~~~dlIV~G~~~~~~---------~-~~~~lGs~~~~v~~~---~~~pvlvv~ 132 (132)
T cd01988 80 H-DIASGILRTAKERQADLIIMGWHGSTS---------L-RDRLFGGVIDQVLES---APCDVAVVK 132 (132)
T ss_pred C-CHHHHHHHHHHhcCCCEEEEecCCCCC---------c-cceecCchHHHHHhc---CCCCEEEeC
Confidence 2 222233222221118999999986431 2 344688888888877 778999985
No 38
>PRK09982 universal stress protein UspD; Provisional
Probab=98.19 E-value=7.1e-06 Score=78.38 Aligned_cols=134 Identities=11% Similarity=0.018 Sum_probs=80.1
Q ss_pred ceeEEEeccCCchHHHHHHHHhhCCCCCCCceEEEEEEeeecCCCccccccccccCCCCCCCcchHHHHHHHHhhhhcCc
Q 003798 464 LRLVVCVHEEESVAGLINLLEVSCPTVDSPFSIYSLHLIELIGRGIPLLVDYENEEHSPEYTNDDAIHNALKLYSETRGE 543 (794)
Q Consensus 464 lriLv~v~~~~~~~~li~l~~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~~ 543 (794)
.+||++++..++....++-+..++.. ...+++++|+++......+....... ........+...+.++...+....
T Consensus 4 k~ILvavD~S~~s~~al~~A~~lA~~--~~a~l~llhV~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~ 79 (142)
T PRK09982 4 KHIGVAISGNEEDALLVNKALELARH--NDAHLTLIHIDDGLSELYPGIYFPAT--EDILQLLKNKSDNKLYKLTKNIQW 79 (142)
T ss_pred eEEEEEecCCcchHHHHHHHHHHHHH--hCCeEEEEEEccCcchhchhhhccch--HHHHHHHHHHHHHHHHHHHHhcCC
Confidence 37999999999988888888777643 34789999998643211000000000 000000011111223333322122
Q ss_pred eEEEEeEEeccCCChhHHHHHHHHhcCCcEEEecCCCCCCCCCCCccccccchhHHHHHhhccCCCceEEE
Q 003798 544 LKFNAFTALAPMRSMYQNICELALDNKATLIILPFHKEYPNNLEGTQILRRGVQSVNIKVLSHAPCSVGVL 614 (794)
Q Consensus 544 v~v~~~~~vs~~~~m~~dI~~~A~~~~a~lIilp~h~~~~~d~~g~~~~~~~~~~~n~~vl~~ApCsVgIl 614 (794)
..++..... .+..+.||+.|++.++|||+||.| +. | + .+.+ ++.++|+++++|||-|.
T Consensus 80 ~~~~~~v~~---G~p~~~I~~~A~~~~aDLIVmG~~-~~-----~-~--~~~~-~va~~V~~~s~~pVLvv 137 (142)
T PRK09982 80 PKTKLRIER---GEMPETLLEIMQKEQCDLLVCGHH-HS-----F-I--NRLM-PAYRGMINKMSADLLIV 137 (142)
T ss_pred CcceEEEEe---cCHHHHHHHHHHHcCCCEEEEeCC-hh-----H-H--HHHH-HHHHHHHhcCCCCEEEe
Confidence 334444433 588999999999999999999965 31 1 1 1125 48999999999999775
No 39
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=98.14 E-value=1.7e-05 Score=73.97 Aligned_cols=129 Identities=12% Similarity=0.140 Sum_probs=77.6
Q ss_pred eEEEEEecCCccHHHHHHHHHHHhcCCCeEEEEEEeeccCCCCCch--hhhhhHHHHHHHHHh-------hcCCCCceEE
Q 003798 634 HHFVVLFLGGADAREALAYADRMVGNLDVSLTVIRFLSFNHEGDDE--MEKKLDDGLVTWFWV-------KNESNERVRY 704 (794)
Q Consensus 634 ~~I~v~f~GG~dDreAL~~A~rma~~~~v~ltvl~~~~~~~~~~~~--~~~~~d~~~l~~~~~-------~~~~~~~v~y 704 (794)
+||++++.|.++++.|+++|.+++++.+.+++++|+.+........ .+.+........... .........+
T Consensus 3 ~~Ilv~~d~~~~~~~al~~a~~la~~~~~~i~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (140)
T PF00582_consen 3 KRILVAIDGSEESRRALRFALELAKRSGAEITLLHVIPPPPQYSFSAAEDEESEEEAEEEEQARQAEAEEAEAEGGIVIE 82 (140)
T ss_dssp SEEEEEESSSHHHHHHHHHHHHHHHHHTCEEEEEEEEESCHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSEEE
T ss_pred CEEEEEECCCHHHHHHHHHHHHHHHhhCCeEEEEEeeccccccccccccccccccccchhhhhhhHHHHHHhhhccceeE
Confidence 5999999999999999999999999999999999999754321100 000000000000000 0001123333
Q ss_pred EEEEecChHHHHHHHHhhhccCcccEEEEecccCCCCccccccCCCCCCCccchhhhhhhccCCCCceeEEEEE
Q 003798 705 REVVVRNGAETVASIQAVNDEAYCDLWIVGRYQGINGKLLEGLEAWSEDNELGVIGDYVASIDFGSTASVLVMQ 778 (794)
Q Consensus 705 ~e~~v~~~~~~~~~i~~~~~~~~~DL~iVGr~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~~~SvLvvq 778 (794)
......+..+.+....+. .+ +||+++|+++.. .|.+ --+|...+-++.. +.++||||.
T Consensus 83 ~~~~~~~~~~~i~~~~~~-~~--~dliv~G~~~~~---------~~~~-~~~gs~~~~l~~~---~~~pVlvv~ 140 (140)
T PF00582_consen 83 VVIESGDVADAIIEFAEE-HN--ADLIVMGSRGRS---------GLER-LLFGSVAEKLLRH---APCPVLVVP 140 (140)
T ss_dssp EEEEESSHHHHHHHHHHH-TT--CSEEEEESSSTT---------STTT-SSSHHHHHHHHHH---TSSEEEEEE
T ss_pred EEEEeeccchhhhhcccc-cc--ceeEEEeccCCC---------CccC-CCcCCHHHHHHHc---CCCCEEEeC
Confidence 333343433322222222 23 999999998732 1222 2389999999987 778999983
No 40
>PRK09982 universal stress protein UspD; Provisional
Probab=98.09 E-value=1.6e-05 Score=75.92 Aligned_cols=125 Identities=16% Similarity=0.187 Sum_probs=73.6
Q ss_pred ceEEEEEecCCccHHHHHHHHHHHhcCCCeEEEEEEeeccCCC---C----C-c---hhhhhhHHHHHHHHHhhcCCCCc
Q 003798 633 RHHFVVLFLGGADAREALAYADRMVGNLDVSLTVIRFLSFNHE---G----D-D---EMEKKLDDGLVTWFWVKNESNER 701 (794)
Q Consensus 633 ~~~I~v~f~GG~dDreAL~~A~rma~~~~v~ltvl~~~~~~~~---~----~-~---~~~~~~d~~~l~~~~~~~~~~~~ 701 (794)
.++|+++..|.++.+.|+++|.++|+.++++++++|++++... . . + +..++..++.+++++.+.. ...
T Consensus 3 ~k~ILvavD~S~~s~~al~~A~~lA~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~ 81 (142)
T PRK09982 3 YKHIGVAISGNEEDALLVNKALELARHNDAHLTLIHIDDGLSELYPGIYFPATEDILQLLKNKSDNKLYKLTKNIQ-WPK 81 (142)
T ss_pred ceEEEEEecCCcchHHHHHHHHHHHHHhCCeEEEEEEccCcchhchhhhccchHHHHHHHHHHHHHHHHHHHHhcC-CCc
Confidence 3689999999999999999999999999999999999864210 0 0 0 1112223345666554432 122
Q ss_pred eEEEEEEecChHHHHHHHHhhhccCcccEEEEecccCCCCccccccCCCCCCCccchhhhhhhccCCCCceeEEEEE
Q 003798 702 VRYREVVVRNGAETVASIQAVNDEAYCDLWIVGRYQGINGKLLEGLEAWSEDNELGVIGDYVASIDFGSTASVLVMQ 778 (794)
Q Consensus 702 v~y~e~~v~~~~~~~~~i~~~~~~~~~DL~iVGr~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~~~SvLvvq 778 (794)
+ +..+..|......++..++.+ .||+|+|++ + + |++.| +| +.+-+... ++++||||.
T Consensus 82 ~---~~~v~~G~p~~~I~~~A~~~~-aDLIVmG~~-~--~----~~~~~-----~~-va~~V~~~---s~~pVLvv~ 138 (142)
T PRK09982 82 T---KLRIERGEMPETLLEIMQKEQ-CDLLVCGHH-H--S----FINRL-----MP-AYRGMINK---MSADLLIVP 138 (142)
T ss_pred c---eEEEEecCHHHHHHHHHHHcC-CCEEEEeCC-h--h----HHHHH-----HH-HHHHHHhc---CCCCEEEec
Confidence 2 222333422223333322222 899999974 2 1 22333 24 44444433 678899874
No 41
>PRK15005 universal stress protein F; Provisional
Probab=98.06 E-value=4.8e-05 Score=72.50 Aligned_cols=127 Identities=13% Similarity=0.076 Sum_probs=79.4
Q ss_pred eEEEEEecCCcc--HHHHHHHHHHHhcCCCeEEEEEEeeccCCC---------CCc---hhhhhhHHHHHHHHHhhcCCC
Q 003798 634 HHFVVLFLGGAD--AREALAYADRMVGNLDVSLTVIRFLSFNHE---------GDD---EMEKKLDDGLVTWFWVKNESN 699 (794)
Q Consensus 634 ~~I~v~f~GG~d--DreAL~~A~rma~~~~v~ltvl~~~~~~~~---------~~~---~~~~~~d~~~l~~~~~~~~~~ 699 (794)
++|++++.|.++ .+.|+++|.++|+..+.+++++|++++... .+. +..++..++.++++.++...
T Consensus 3 ~~ILv~~D~s~~~~~~~a~~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~- 81 (144)
T PRK15005 3 RTILVPIDISDSELTQRVISHVEAEAKIDDAEVHFLTVIPSLPYYASLGLAYSAELPAMDDLKAEAKSQLEEIIKKFKL- 81 (144)
T ss_pred ccEEEecCCCchhHHHHHHHHHHHHHhccCCeEEEEEEEccCcccccccccccccchHHHHHHHHHHHHHHHHHHHhCC-
Confidence 589999999987 479999999999999999999999864211 000 11122233455555554322
Q ss_pred CceEEEEEEecChHHHHHHHHhhh-ccCcccEEEEecccCCCCccccccCCCCCCCccchhhhhhhccCCCCceeEEEEE
Q 003798 700 ERVRYREVVVRNGAETVASIQAVN-DEAYCDLWIVGRYQGINGKLLEGLEAWSEDNELGVIGDYVASIDFGSTASVLVMQ 778 (794)
Q Consensus 700 ~~v~y~e~~v~~~~~~~~~i~~~~-~~~~~DL~iVGr~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~~~SvLvvq 778 (794)
+.+.+... +..|......++... .+ +||+++|+++ . |+.+| -+|-..+-+... ++++||||.
T Consensus 82 ~~~~~~~~-v~~G~p~~~I~~~a~~~~--~DLIV~Gs~~-~------~~~~~----llGS~a~~vl~~---a~cpVlvVr 144 (144)
T PRK15005 82 PTDRVHVH-VEEGSPKDRILELAKKIP--ADMIIIASHR-P------DITTY----LLGSNAAAVVRH---AECSVLVVR 144 (144)
T ss_pred CCCceEEE-EeCCCHHHHHHHHHHHcC--CCEEEEeCCC-C------Cchhe----eecchHHHHHHh---CCCCEEEeC
Confidence 22333333 334533333333322 24 8999999763 1 22222 378888888877 788999983
No 42
>PRK11175 universal stress protein UspE; Provisional
Probab=97.99 E-value=2.4e-05 Score=84.68 Aligned_cols=142 Identities=12% Similarity=0.018 Sum_probs=84.2
Q ss_pred ceeEEEeccCCch-------HHHHHHHHhhCCCC-CCCceEEEEEEeeecCCCccccccccccCCCCCCCcchHHHHHHH
Q 003798 464 LRLVVCVHEEESV-------AGLINLLEVSCPTV-DSPFSIYSLHLIELIGRGIPLLVDYENEEHSPEYTNDDAIHNALK 535 (794)
Q Consensus 464 lriLv~v~~~~~~-------~~li~l~~~~~~~~-~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~~i~~af~ 535 (794)
.+||+++...+.. ..+++.+..++... + ..++++|+.+............... ........++..+.++
T Consensus 153 ~~Ilva~D~s~~~~~~~~~~~~al~~a~~la~~~~~--a~l~ll~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~ 229 (305)
T PRK11175 153 GKILVAVNVASEEPYHDALNEKLVEEAIDLAEQLNH--AEVHLVNAYPVTPINIAIELPEFDP-SVYNDAIRGQHLLAMK 229 (305)
T ss_pred CeEEEEeCCCCCccchhHHHHHHHHHHHHHHhhCcC--CceEEEEEecCcchhccccccccch-hhHHHHHHHHHHHHHH
Confidence 5899999976543 35777776665433 3 5789999886432110000000000 0000001122233444
Q ss_pred HhhhhcCceEEEEeEEeccCCChhHHHHHHHHhcCCcEEEecCCCCCCCCCCCccccccc-hhHHHHHhhccCCCceEEE
Q 003798 536 LYSETRGELKFNAFTALAPMRSMYQNICELALDNKATLIILPFHKEYPNNLEGTQILRRG-VQSVNIKVLSHAPCSVGVL 614 (794)
Q Consensus 536 ~~~~~~~~v~v~~~~~vs~~~~m~~dI~~~A~~~~a~lIilp~h~~~~~d~~g~~~~~~~-~~~~n~~vl~~ApCsVgIl 614 (794)
++.+. .+++....... ..+..+.|++.|+++++|||+||.|++... .+. +++..++|++++||||-++
T Consensus 230 ~~~~~-~~~~~~~~~v~--~G~~~~~I~~~a~~~~~DLIVmG~~~~~~~--------~~~llGS~a~~v~~~~~~pVLvv 298 (305)
T PRK11175 230 ALRQK-FGIDEEQTHVE--EGLPEEVIPDLAEHLDAELVILGTVGRTGL--------SAAFLGNTAEHVIDHLNCDLLAI 298 (305)
T ss_pred HHHHH-hCCChhheeec--cCCHHHHHHHHHHHhCCCEEEECCCccCCC--------cceeecchHHHHHhcCCCCEEEE
Confidence 44433 23332222212 257789999999999999999999966321 233 8899999999999999887
Q ss_pred ecCCC
Q 003798 615 VDKGN 619 (794)
Q Consensus 615 vdRg~ 619 (794)
..+|+
T Consensus 299 ~~~~~ 303 (305)
T PRK11175 299 KPDGY 303 (305)
T ss_pred cCCCC
Confidence 66665
No 43
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=97.99 E-value=4.4e-05 Score=70.35 Aligned_cols=129 Identities=21% Similarity=0.195 Sum_probs=85.4
Q ss_pred eeEEEeccCCchHHHHHHHHhhCCCCCCCceEEEEEEeeecCCCccccccccccCCCCCCCcchHHHHHHHHhhhhcCce
Q 003798 465 RLVVCVHEEESVAGLINLLEVSCPTVDSPFSIYSLHLIELIGRGIPLLVDYENEEHSPEYTNDDAIHNALKLYSETRGEL 544 (794)
Q Consensus 465 riLv~v~~~~~~~~li~l~~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~~v 544 (794)
++|+|+.+.++...+++.+..++... ...++++|+.+-.+.... .... ......++.++.+...... .++
T Consensus 1 ~ilv~i~~~~~~~~~l~~a~~~a~~~--~~~i~~l~v~~~~~~~~~---~~~~----~~~~~~~~~l~~~~~~~~~-~~~ 70 (130)
T cd00293 1 RILVAVDGSEESERALRWAARLARRL--GAELVLLHVVDPPPSSAA---ELAE----LLEEEARALLEALREALAE-AGV 70 (130)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhc--CCEEEEEEEecCCCCcch---hHHH----HHHHHHHHHHHHHHHHHhc-CCC
Confidence 58999999999999999998887654 478899999764332211 0000 0111223333333332212 456
Q ss_pred EEEEeEEeccCCChhHHHHHHHHhcCCcEEEecCCCCCCCCCCCccccccchhHHHHHhhccCCCceEE
Q 003798 545 KFNAFTALAPMRSMYQNICELALDNKATLIILPFHKEYPNNLEGTQILRRGVQSVNIKVLSHAPCSVGV 613 (794)
Q Consensus 545 ~v~~~~~vs~~~~m~~dI~~~A~~~~a~lIilp~h~~~~~d~~g~~~~~~~~~~~n~~vl~~ApCsVgI 613 (794)
+++...... +..++|++.+++.++|++++|++++.... ...+++..+++++++||+|-+
T Consensus 71 ~~~~~~~~~---~~~~~i~~~~~~~~~dlvvig~~~~~~~~-------~~~~~~~~~~ll~~~~~pvli 129 (130)
T cd00293 71 KVETVVLEG---DPAEAILEAAEELGADLIVMGSRGRSGLR-------RLLLGSVAERVLRHAPCPVLV 129 (130)
T ss_pred ceEEEEecC---CCHHHHHHHHHHcCCCEEEEcCCCCCccc-------eeeeccHHHHHHhCCCCCEEe
Confidence 666555443 33899999999999999999998663211 112778899999999999865
No 44
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=97.98 E-value=0.0072 Score=67.08 Aligned_cols=297 Identities=18% Similarity=0.113 Sum_probs=155.3
Q ss_pred CCChhHHHHHHHHhhCccccCCchhhhhccCCCCcHHHHHHHHHHHHHHHHHHHhhccChhHHHhcCchhhHHHHHHHHH
Q 003798 67 KQPRVISEMIGGIIVGPSILGRNKKFAEAMLPDNSQLVVRSVGIMAFMYFMFIAGIKMDFTLLKRCGRKHVYIAVTGVII 146 (794)
Q Consensus 67 ~~P~ii~~IlaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~~~ 146 (794)
.+|.++--++.|+++.. +|.++ ++.+.+..+.+.+..+-+-+++.=++.|+++++|.++|.+..=+.+ .+
T Consensus 24 ~l~~~vl~~~~~~~lsn--lgli~-------~p~~s~~y~~v~~~~vPlai~LlLl~~Dlr~i~~~g~~~l~~F~~~-~~ 93 (378)
T PF05684_consen 24 YLPGAVLCYLLGMLLSN--LGLID-------SPASSPVYDFVWTYLVPLAIPLLLLSADLRRILRLGGRLLLAFLIG-AV 93 (378)
T ss_pred hcCHHHHHHHHHHHHHH--CCCcC-------CCCcchHHHHHHHHHHHHHHHHHHHHccHHHHHHhhHHHHHHHHHH-HH
Confidence 47888888899999987 45541 2234567788888888888888888999999999988876543333 34
Q ss_pred HHHHHHHHHHHhhccC-CcchhhHHHHHHHHHHHhhcc------HHHHHHHHHhcCccCChhHHHHHHHHHHHHHHHHHH
Q 003798 147 PTATSAAVAFLTRKSM-DPELAKVSSIGAITTSLAVTS------FPVLNPILKDLNLLSSEMGRMAIVTAVIGDAIGINI 219 (794)
Q Consensus 147 p~~l~~~~~~~l~~~~-~~~~~~~~~~l~lg~~ls~Ts------~~vv~~iL~el~l~~s~~g~l~ls~a~v~D~~~~il 219 (794)
..++|+.+++++.+.. . + +..-++.+++.|- +..+... ++. + ..+.-+....|.++.-+.
T Consensus 94 g~viG~~va~~l~~~~l~--~----~~wk~ag~l~gsyiGGs~N~~Av~~a---l~~--~--~~~~~a~~aaDnv~~~~~ 160 (378)
T PF05684_consen 94 GTVIGAVVAFLLFGGFLG--P----EGWKIAGMLAGSYIGGSVNFVAVAEA---LGV--S--DSLFAAALAADNVVMALW 160 (378)
T ss_pred HHHHHHHHHHHHHhhccc--c----hHHHHHHHHHhcccCchhHHHHHHHH---HCC--C--HHHHHHHHHHHHHHHHHH
Confidence 4455666666554432 2 1 1222233333322 2222222 232 1 233333344444544444
Q ss_pred HHHHHHHhcCC-------CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCCcccchHHHHHHHHHHHHHHHH
Q 003798 220 VIAFEAAKQGE-------GDSVDAVWYLISLVILLAFICIAVRRTMLWIVHK--TPVGKPVSQGYIVGILLGVLVMGFLT 290 (794)
Q Consensus 220 l~v~~~~~~~~-------~~~~~~l~~~~~~~~~~~~~~~v~r~~~~~i~~~--~~~~~~~~e~~~~~il~~~l~~~~~a 290 (794)
+.+...+.... .......... -....+. ..++++.. ..+...+.+.+....++
T Consensus 161 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~-~~l~~~la~a~~v~~~s 222 (378)
T PF05684_consen 161 FAFLLALPPFARKFDRWTKADTSSIEAL-----------------EEEIEAEEAEWARKPIS-QDLAFLLAVAFAVVALS 222 (378)
T ss_pred HHHHHHHhhhhHHhhhccCCCccccchh-----------------hhhhhhhhhccccCCcH-hHHHHHHHHHHHHHHHH
Confidence 44443332100 0000000000 0000000 00011111 22333344333333333
Q ss_pred HHhch-------------hhhHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccchhh
Q 003798 291 DMFGM-------------AIANGPLWLGLVIPDGPPLGATLVERTETLIMEIFMPFAFAVVGMYTDVYAMFEFGWSGLSP 357 (794)
Q Consensus 291 e~~G~-------------~~~lgaflaGl~i~~~~~~~~~l~~kl~~~~~~~~~PlfF~~~G~~~dl~~l~~~~~~~~~~ 357 (794)
+.++- -.++-....|++... +|..+.+ .--+.+ ..+++=+||+.+|++.|+..+. ... .
T Consensus 223 ~~la~~l~~~~~~~~~~~~~il~~tt~~l~~~~-~~~~~~l-~g~~~l-g~~lly~ffa~IGa~a~i~~l~---~ap--~ 294 (378)
T PF05684_consen 223 HALAAWLPPLFAGISSSTWLILTVTTLGLATSF-PPFRKLL-RGASEL-GTFLLYLFFAVIGASADISELL---DAP--S 294 (378)
T ss_pred HHHHHHHHHHHhhccccHHHHHHHHHHHHHHhc-cchhhcC-CchHHH-HHHHHHHHHHHHccccCHHHHH---HhH--H
Confidence 32221 123334445555443 4555444 334444 6788888999999999999887 322 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhHHHHHHHHHHhhhhccc
Q 003798 358 LFGMIVTGYISKLLGTLIPSLLCQMPFRDSLTLSLMMSLRGQVELLLYIHWIDKLI 413 (794)
Q Consensus 358 ~~~i~~~~~l~K~~~~~l~~~~~~~~~~e~~~lgl~m~~kG~~~l~~~~~~~~~~i 413 (794)
.+++.++.+..-.+..+..+|++|+|..+... +..-|.-|.........+++...
T Consensus 295 ~~l~~~i~l~iH~~l~l~~~kl~k~~l~~~~v-AS~AnIGGpaTA~a~A~a~~~~L 349 (378)
T PF05684_consen 295 LFLFGFIILAIHLLLMLILGKLFKIDLFELLV-ASNANIGGPATAPAVAAAKGPSL 349 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH-HhhcccCCcchHHHHHHhcCCcc
Confidence 34445555667788888999999999866544 44456667666655555554333
No 45
>PRK10116 universal stress protein UspC; Provisional
Probab=97.96 E-value=4.4e-05 Score=72.63 Aligned_cols=135 Identities=10% Similarity=0.030 Sum_probs=82.3
Q ss_pred ceeEEEeccCCchHHHHHHHHhhCCCCCCCceEEEEEEeeecCCCccccccccccCCCCCCCcchHHHHHHHHhhhhcCc
Q 003798 464 LRLVVCVHEEESVAGLINLLEVSCPTVDSPFSIYSLHLIELIGRGIPLLVDYENEEHSPEYTNDDAIHNALKLYSETRGE 543 (794)
Q Consensus 464 lriLv~v~~~~~~~~li~l~~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~~ 543 (794)
.+||++++..++....++.+..++...+ ..++++|.++...-... . ..... ........++..+.++++.+. .+
T Consensus 4 ~~ILv~~D~s~~s~~al~~A~~lA~~~~--a~l~ll~v~~~~~~~~~-~-~~~~~-~~~~~~~~~~~~~~l~~~~~~-~~ 77 (142)
T PRK10116 4 SNILVAVAVTPESQQLLAKAVSIARPVN--GKISLITLASDPEMYNQ-F-AAPML-EDLRSVMQEETQSFLDKLIQD-AD 77 (142)
T ss_pred ceEEEEccCCcchHHHHHHHHHHHHHhC--CEEEEEEEccCcccchh-h-hHHHH-HHHHHHHHHHHHHHHHHHHHh-cC
Confidence 4799999999988888888877765433 57888998864311000 0 00000 000001112222334444333 33
Q ss_pred eEEEEeEEeccCCChhHHHHHHHHhcCCcEEEecCCCCCCCCCCCccccccchhHHHHHhhccCCCceEEEe
Q 003798 544 LKFNAFTALAPMRSMYQNICELALDNKATLIILPFHKEYPNNLEGTQILRRGVQSVNIKVLSHAPCSVGVLV 615 (794)
Q Consensus 544 v~v~~~~~vs~~~~m~~dI~~~A~~~~a~lIilp~h~~~~~d~~g~~~~~~~~~~~n~~vl~~ApCsVgIlv 615 (794)
++..... + ...+..+.|++.|++.++||||+|-|++...+ .+.++-.+|++++||||-|+-
T Consensus 78 ~~~~~~~-~-~~G~~~~~I~~~a~~~~~DLiV~g~~~~~~~~---------~~~s~a~~v~~~~~~pVLvv~ 138 (142)
T PRK10116 78 YPIEKTF-I-AYGELSEHILEVCRKHHFDLVICGNHNHSFFS---------RASCSAKRVIASSEVDVLLVP 138 (142)
T ss_pred CCeEEEE-E-ecCCHHHHHHHHHHHhCCCEEEEcCCcchHHH---------HHHHHHHHHHhcCCCCEEEEe
Confidence 4332111 2 35688999999999999999999999552111 133667899999999998763
No 46
>PRK10116 universal stress protein UspC; Provisional
Probab=97.91 E-value=6.7e-05 Score=71.32 Aligned_cols=126 Identities=12% Similarity=0.104 Sum_probs=75.3
Q ss_pred ceEEEEEecCCccHHHHHHHHHHHhcCCCeEEEEEEeeccCCC---C-C---ch---hhhhhHHHHHHHHHhhcCCCCce
Q 003798 633 RHHFVVLFLGGADAREALAYADRMVGNLDVSLTVIRFLSFNHE---G-D---DE---MEKKLDDGLVTWFWVKNESNERV 702 (794)
Q Consensus 633 ~~~I~v~f~GG~dDreAL~~A~rma~~~~v~ltvl~~~~~~~~---~-~---~~---~~~~~d~~~l~~~~~~~~~~~~v 702 (794)
.++|+++..+.++...||++|.++|+..+++++++++.++... . . ++ ..++.-++.++++..+. .+
T Consensus 3 ~~~ILv~~D~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~ 78 (142)
T PRK10116 3 YSNILVAVAVTPESQQLLAKAVSIARPVNGKISLITLASDPEMYNQFAAPMLEDLRSVMQEETQSFLDKLIQDA----DY 78 (142)
T ss_pred CceEEEEccCCcchHHHHHHHHHHHHHhCCEEEEEEEccCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhc----CC
Confidence 3699999999999999999999999999999999999753210 0 0 00 01111223444443332 12
Q ss_pred EEEEEEecChHHHHHHHHhhhccCcccEEEEecccCCCCccccccCCCCCCCccchhhhhhhccCCCCceeEEEEE
Q 003798 703 RYREVVVRNGAETVASIQAVNDEAYCDLWIVGRYQGINGKLLEGLEAWSEDNELGVIGDYVASIDFGSTASVLVMQ 778 (794)
Q Consensus 703 ~y~e~~v~~~~~~~~~i~~~~~~~~~DL~iVGr~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~~~SvLvvq 778 (794)
...+..+..|......++...+.+ +||+|+|.++.. +++.| +...+-++.. ++++||||-
T Consensus 79 ~~~~~~~~~G~~~~~I~~~a~~~~-~DLiV~g~~~~~------~~~~~------~s~a~~v~~~---~~~pVLvv~ 138 (142)
T PRK10116 79 PIEKTFIAYGELSEHILEVCRKHH-FDLVICGNHNHS------FFSRA------SCSAKRVIAS---SEVDVLLVP 138 (142)
T ss_pred CeEEEEEecCCHHHHHHHHHHHhC-CCEEEEcCCcch------HHHHH------HHHHHHHHhc---CCCCEEEEe
Confidence 122334444544444444433222 999999998642 12222 2235555544 788999985
No 47
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=97.89 E-value=6.3e-05 Score=71.80 Aligned_cols=127 Identities=13% Similarity=0.133 Sum_probs=76.3
Q ss_pred ceEEEEEecCCccHHHHHHHHHHHhcCCCeEEEEEEeeccC-CC-C----C--chhh---hhhHHHHHHHHHhhcCCCCc
Q 003798 633 RHHFVVLFLGGADAREALAYADRMVGNLDVSLTVIRFLSFN-HE-G----D--DEME---KKLDDGLVTWFWVKNESNER 701 (794)
Q Consensus 633 ~~~I~v~f~GG~dDreAL~~A~rma~~~~v~ltvl~~~~~~-~~-~----~--~~~~---~~~d~~~l~~~~~~~~~~~~ 701 (794)
++||+++..|.++++.|+++|..+|+..+++++++|+..+. .. . . ++.+ .+...+.++++..+. .
T Consensus 3 ~~~ILvavD~S~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~ 78 (144)
T PRK15118 3 YKHILIAVDLSPESKVLVEKAVSMARPYNAKVSLIHVDVNYSDLYTGLIDVNLGDMQKRISEETHHALTELSTNA----G 78 (144)
T ss_pred ceEEEEEccCChhHHHHHHHHHHHHHhhCCEEEEEEEccChhhhhhhhhhcchHHHHHHHHHHHHHHHHHHHHhC----C
Confidence 36999999999999999999999999999999999995321 10 0 0 0011 111112334433222 1
Q ss_pred eEEEEEEecChHHHHHHHHhhhccCcccEEEEecccCCCCccccccCCCCCCCccchhhhhhhccCCCCceeEEEEEee
Q 003798 702 VRYREVVVRNGAETVASIQAVNDEAYCDLWIVGRYQGINGKLLEGLEAWSEDNELGVIGDYVASIDFGSTASVLVMQQQ 780 (794)
Q Consensus 702 v~y~e~~v~~~~~~~~~i~~~~~~~~~DL~iVGr~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~~~SvLvvqq~ 780 (794)
+...+..+..|......++..++.+ +||+|+|++++ + |. .+|-..+-+... ++++||||...
T Consensus 79 ~~~~~~~~~~G~p~~~I~~~a~~~~-~DLIV~Gs~~~-------~---~~---~lgSva~~v~~~---a~~pVLvv~~~ 140 (144)
T PRK15118 79 YPITETLSGSGDLGQVLVDAIKKYD-MDLVVCGHHQD-------F---WS---KLMSSARQLINT---VHVDMLIVPLR 140 (144)
T ss_pred CCceEEEEEecCHHHHHHHHHHHhC-CCEEEEeCccc-------H---HH---HHHHHHHHHHhh---CCCCEEEecCC
Confidence 2222334444433333333332222 89999999842 1 11 156666666655 78899999864
No 48
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=97.79 E-value=0.0032 Score=66.76 Aligned_cols=253 Identities=15% Similarity=0.119 Sum_probs=148.0
Q ss_pred HHHHHHHHhhccChhHHHhcCchhhHHHHHHHHHHHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHhhccHHHHHHHHH
Q 003798 113 FMYFMFIAGIKMDFTLLKRCGRKHVYIAVTGVIIPTATSAAVAFLTRKSMDPELAKVSSIGAITTSLAVTSFPVLNPILK 192 (794)
Q Consensus 113 l~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~~~p~~l~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~ 192 (794)
+..++|-.|-++|++...+..||...+-+.-+.++++++..++.+++.... .....+.+-++++.+--..=..+..
T Consensus 51 l~~~~~~~Ga~I~~k~~~~~l~kg~~l~~~K~~~~~~~g~~~~~~~g~~g~----~Gls~laiiaa~~~~Ng~ly~al~~ 126 (312)
T PRK12460 51 LGAFLLCMGAQISLKAAPQALLKGGVLTITKLGVAIVIGLLVGKFFGAEGI----FGLSGLAIVAAMSNSNGGLYAALMG 126 (312)
T ss_pred HHHHHHHhcCeeeccccchhhhhhhhhhhHHHHHHHHHHHHHHHHcCcccc----cchHHHHHHHHHhcCcHHHHHHHHH
Confidence 456789999999999998888999888888999999999999888875321 1245666667777776666667777
Q ss_pred hcCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccc
Q 003798 193 DLNLLSSEMGRMAIVTAVIGDAIGINIVIAFEAAKQGEGDSVDAVWYLISLVILLAFICIAVRRTMLWIVHKTPVGKPVS 272 (794)
Q Consensus 193 el~l~~s~~g~l~ls~a~v~D~~~~ill~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~r~~~~~i~~~~~~~~~~~ 272 (794)
|+| -++|.|-..+. .++|. ++..++... . .++.+ .|
T Consensus 127 ~yG-~~~d~gA~~~~--sl~~G---------------------Pf~tm~aLg---a----------~gLA~-ip------ 162 (312)
T PRK12460 127 EFG-DERDVGAISIL--SLNDG---------------------PFFTMLALG---A----------AGLAN-IP------ 162 (312)
T ss_pred HcC-CHhhhhHHhhh--hhccC---------------------cHHHHHHHH---H----------HHHhc-CC------
Confidence 777 34455532211 11211 111111110 0 01111 11
Q ss_pred chHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHhcccccccccccccc
Q 003798 273 QGYIVGILLGVLVMGFLTDMFGMAIANGPLWLGLVIPDGPPLGATLVERTETLIMEIFMPFAFAVVGMYTDVYAMFEFGW 352 (794)
Q Consensus 273 e~~~~~il~~~l~~~~~ae~~G~~~~lgaflaGl~i~~~~~~~~~l~~kl~~~~~~~~~PlfF~~~G~~~dl~~l~~~~~ 352 (794)
... + -+.+=+++.|+++.|.. +.+.+.+++- ..+.+|+|-+..|.++|++++. .
T Consensus 163 -~~~---l---------------v~lilpILiGmilGNld---~~~~~~l~~G-i~f~I~f~~f~LG~~lnl~~I~---~ 216 (312)
T PRK12460 163 -IMA---L---------------VAALLPLVLGMILGNLD---PDMRKFLTKG-GPLLIPFFAFALGAGINLSMLL---Q 216 (312)
T ss_pred -hHH---H---------------HHHHHHHHHHHHHhccc---hhhHHHHhcc-ceEeHHHHHHHhcCCeeHHHHH---H
Confidence 000 0 01233556777777732 2344555553 4568999999999999999886 2
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHH--HHHHhHHHHHHHHHHhhhhccccCCchhHHHHHHHHHHH
Q 003798 353 SGLSPLFGMIVTGYISKLLGTLIPSLLCQMPFRDSLTLS--LMMSLRGQVELLLYIHWIDKLIIGVPPFTLLVLSTVVIT 430 (794)
Q Consensus 353 ~~~~~~~~i~~~~~l~K~~~~~l~~~~~~~~~~e~~~lg--l~m~~kG~~~l~~~~~~~~~~ii~~~~~~~lv~~~ll~t 430 (794)
..+. .+++.++.++.-...+++..|++|.+.+-+..+| ..-+.-|...++.+.-.++. -.+.-++.+.+.++.|
T Consensus 217 ~G~~-GIlL~v~vv~~t~~~~~~i~rllg~~~~~g~li~stAGnAIcgpAAVaAadP~~~~---~~~~Ataqvaa~vivT 292 (312)
T PRK12460 217 AGLA-GILLGVLVTIVTGFFNIFADRLVGGTGIAGAAASSTAGNAVATPLAIAAADPSLAP---VAAAATAQVAASVIVT 292 (312)
T ss_pred hChH-HHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHhhHHHHHHHHHHHhchhHHH---HHHHHHHHHHHHHHHH
Confidence 3332 3333333444455666666788888887777766 43333333333322222211 1234566667777778
Q ss_pred HhHHHHH-HhhcCC
Q 003798 431 GIAGPLI-SFLYDP 443 (794)
Q Consensus 431 ~i~~plv-~~l~~~ 443 (794)
.+..|++ .|++|+
T Consensus 293 ail~P~~t~~~~k~ 306 (312)
T PRK12460 293 AILTPLLTSWVAKK 306 (312)
T ss_pred HHHHHHHHHHHHHH
Confidence 8777765 455544
No 49
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=97.76 E-value=0.00026 Score=65.52 Aligned_cols=123 Identities=14% Similarity=0.157 Sum_probs=75.1
Q ss_pred EEEEEecCCccHHHHHHHHHHHhcCCCeEEEEEEeeccCCCCCchhhhhhHHHHHHHHHhhcCCCCceEEEEEEecChHH
Q 003798 635 HFVVLFLGGADAREALAYADRMVGNLDVSLTVIRFLSFNHEGDDEMEKKLDDGLVTWFWVKNESNERVRYREVVVRNGAE 714 (794)
Q Consensus 635 ~I~v~f~GG~dDreAL~~A~rma~~~~v~ltvl~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~v~y~e~~v~~~~~ 714 (794)
||++++.|.+.+++|+++|.++|++.+.+++++++.+++..... +..++.++++++..... .+.+. .+.++ +
T Consensus 1 ~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~----~~~~~~l~~~~~~~~~~-~~~~~--~~~~~-~ 72 (124)
T cd01987 1 RILVCISGGPNAERLIRRAARLADRLKAPWYVVYVETPRLNRLS----EAERRRLAEALRLAEEL-GAEVV--TLPGD-D 72 (124)
T ss_pred CEEEEECCCcchHHHHHHHHHHHHHhCCCEEEEEEecCccccCC----HHHHHHHHHHHHHHHHc-CCEEE--EEeCC-c
Confidence 58999999999999999999999999999999999875432111 11223444444332211 22222 22222 2
Q ss_pred HHHHHHhhhccCcccEEEEecccCCCCccccccCCCCCCCccchhhhhhhccCCCCceeEEEE
Q 003798 715 TVASIQAVNDEAYCDLWIVGRYQGINGKLLEGLEAWSEDNELGVIGDYVASIDFGSTASVLVM 777 (794)
Q Consensus 715 ~~~~i~~~~~~~~~DL~iVGr~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~~~SvLvv 777 (794)
..+.|.+..++.+.|++++|.++.. . |. .--+|-..+-+.-.- .+..|||+
T Consensus 73 ~~~~I~~~~~~~~~dllviG~~~~~--~-------~~-~~~~Gs~~~~v~~~a--~~~~v~v~ 123 (124)
T cd01987 73 VAEAIVEFAREHNVTQIVVGKSRRS--R-------WR-ELFRGSLVDRLLRRA--GNIDVHIV 123 (124)
T ss_pred HHHHHHHHHHHcCCCEEEeCCCCCc--h-------HH-HHhcccHHHHHHHhC--CCCeEEEe
Confidence 2233332222111799999998642 1 22 225788888887662 36788886
No 50
>PRK15456 universal stress protein UspG; Provisional
Probab=97.75 E-value=0.00029 Score=67.10 Aligned_cols=127 Identities=13% Similarity=0.084 Sum_probs=78.0
Q ss_pred eEEEEEecCCc--cHHHHHHHHHHHhcCCCeEEEEEEeeccCCCC------C--ch---hhhhhHHHHHHHHHhhcCCCC
Q 003798 634 HHFVVLFLGGA--DAREALAYADRMVGNLDVSLTVIRFLSFNHEG------D--DE---MEKKLDDGLVTWFWVKNESNE 700 (794)
Q Consensus 634 ~~I~v~f~GG~--dDreAL~~A~rma~~~~v~ltvl~~~~~~~~~------~--~~---~~~~~d~~~l~~~~~~~~~~~ 700 (794)
++|++++.|.+ .++.|+++|.++|+.. .+++++|+.++.... . ++ ..++..++.++++.++... +
T Consensus 3 ~~ILv~vD~S~~~~s~~al~~A~~la~~~-~~l~llhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~ 80 (142)
T PRK15456 3 KTIIMPVDVFEMELSDKAVRHAEFLAQDD-GVIHLLHVLPGSASLSLHRFAADVRRFEEHLQHEAEERLQTMVSHFTI-D 80 (142)
T ss_pred ccEEEeccCCchhHHHHHHHHHHHHHhcC-CeEEEEEEecCcccccccccccchhhHHHHHHHHHHHHHHHHHHHhCC-C
Confidence 58999999984 8999999999999875 589999998642110 0 00 1122333456666544322 2
Q ss_pred ceEEEEEEecChHHHHHHHHhhhccCcccEEEEecccCCCCccccccCCCCCCCccchhhhhhhccCCCCceeEEEEE
Q 003798 701 RVRYREVVVRNGAETVASIQAVNDEAYCDLWIVGRYQGINGKLLEGLEAWSEDNELGVIGDYVASIDFGSTASVLVMQ 778 (794)
Q Consensus 701 ~v~y~e~~v~~~~~~~~~i~~~~~~~~~DL~iVGr~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~~~SvLvvq 778 (794)
.+.+. ..+..|.. .+.|.+.+++.+.||+|+|++++ + +. ..=+|-..+-++.. ++++||||.
T Consensus 81 ~~~v~-~~v~~G~~-~~~I~~~a~~~~~DLIVmG~~g~--~--------~~-~~llGS~a~~v~~~---a~~pVLvV~ 142 (142)
T PRK15456 81 PSRIK-QHVRFGSV-RDEVNELAEELGADVVVIGSRNP--S--------IS-THLLGSNASSVIRH---ANLPVLVVR 142 (142)
T ss_pred CcceE-EEEcCCCh-HHHHHHHHhhcCCCEEEEcCCCC--C--------cc-ceecCccHHHHHHc---CCCCEEEeC
Confidence 23332 33334422 23333322211189999999852 1 11 12479999999988 788999983
No 51
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=97.70 E-value=0.00062 Score=62.56 Aligned_cols=127 Identities=20% Similarity=0.271 Sum_probs=77.7
Q ss_pred EEEEEecCCccHHHHHHHHHHHhcCCCeEEEEEEeeccCCCCC---chhhhhhHHHHHHHHHhhcCCCCceEEEEEEecC
Q 003798 635 HFVVLFLGGADAREALAYADRMVGNLDVSLTVIRFLSFNHEGD---DEMEKKLDDGLVTWFWVKNESNERVRYREVVVRN 711 (794)
Q Consensus 635 ~I~v~f~GG~dDreAL~~A~rma~~~~v~ltvl~~~~~~~~~~---~~~~~~~d~~~l~~~~~~~~~~~~v~y~e~~v~~ 711 (794)
+|++++.+++..+.++++|.+||+..+.++|++++.++..... ++.+.+..++.+++++.... ...+.+......
T Consensus 1 ~ilv~i~~~~~~~~~l~~a~~~a~~~~~~i~~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~- 78 (130)
T cd00293 1 RILVAVDGSEESERALRWAARLARRLGAELVLLHVVDPPPSSAAELAELLEEEARALLEALREALA-EAGVKVETVVLE- 78 (130)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCCCCcchhHHHHHHHHHHHHHHHHHHHHh-cCCCceEEEEec-
Confidence 5789999999999999999999999999999999986543211 11222334567777765431 112333333332
Q ss_pred hHHHHHHHHhhhccCcccEEEEecccCCCCccccccCCCCCCCccchhhhhhhccCCCCceeEEEE
Q 003798 712 GAETVASIQAVNDEAYCDLWIVGRYQGINGKLLEGLEAWSEDNELGVIGDYVASIDFGSTASVLVM 777 (794)
Q Consensus 712 ~~~~~~~i~~~~~~~~~DL~iVGr~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~~~SvLvv 777 (794)
+.. ...|.+..++.++|++++|.++.. .|.+ --.|.+.+-|... ++.+||+|
T Consensus 79 ~~~-~~~i~~~~~~~~~dlvvig~~~~~---------~~~~-~~~~~~~~~ll~~---~~~pvliv 130 (130)
T cd00293 79 GDP-AEAILEAAEELGADLIVMGSRGRS---------GLRR-LLLGSVAERVLRH---APCPVLVV 130 (130)
T ss_pred CCC-HHHHHHHHHHcCCCEEEEcCCCCC---------ccce-eeeccHHHHHHhC---CCCCEEeC
Confidence 222 223322222211799999997542 1222 2467777777755 55677764
No 52
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=97.52 E-value=0.11 Score=56.64 Aligned_cols=89 Identities=8% Similarity=0.106 Sum_probs=61.4
Q ss_pred hcccCCChhHHHHHHHHhhCccccCCchhhhhccCCCCcHHHHHHHHHHHHHHHHHHHhhccChhHHHhcCchhhHHHHH
Q 003798 63 LKPLKQPRVISEMIGGIIVGPSILGRNKKFAEAMLPDNSQLVVRSVGIMAFMYFMFIAGIKMDFTLLKRCGRKHVYIAVT 142 (794)
Q Consensus 63 l~rl~~P~ii~~IlaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~~~~~ia~~ 142 (794)
+++.+++.++--|+.|+++|+......+. ..-| ...-.-+.+-++|.++ .|.++++.++.+.+.+.+.+...
T Consensus 26 ~~~~~l~~~~~AillG~~l~n~~~~~~~~---~~~~-Gi~f~~k~lLr~gIVL----lG~~l~~~~i~~~G~~~l~~~~~ 97 (335)
T TIGR00698 26 LADPALSALFLAILLGMVAGNTIYPQRDE---EKKR-GVLFAKPFLLRIGITL----YGFRLTFPYIADVGPNEIVADTL 97 (335)
T ss_pred hccCCCcHHHHHHHHHHHHhccccccchh---hccc-hHHHHHHHHHHHHHHH----HCccccHHHHHHhhHHHHHHHHH
Confidence 45578999999999999999864322221 0111 1122445777888875 69999999999999998887777
Q ss_pred HHHHHHHHHHHHH-HHhh
Q 003798 143 GVIIPTATSAAVA-FLTR 159 (794)
Q Consensus 143 ~~~~p~~l~~~~~-~~l~ 159 (794)
.+..++.++..++ .+++
T Consensus 98 ~v~~~~~~~~~~g~k~l~ 115 (335)
T TIGR00698 98 ILTSTFFLTVFLGSSRLK 115 (335)
T ss_pred HHHHHHHHHHHHHHHHhC
Confidence 7777776666665 3554
No 53
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=97.46 E-value=0.03 Score=59.26 Aligned_cols=257 Identities=13% Similarity=0.093 Sum_probs=140.5
Q ss_pred HHHHHHHHHHHhhccChhHHHhcCchhhHHHHHHHHHHHHHHHHHHHHhhccCCcch-hhHHHHHHHHHHHhhccHHHHH
Q 003798 110 IMAFMYFMFIAGIKMDFTLLKRCGRKHVYIAVTGVIIPTATSAAVAFLTRKSMDPEL-AKVSSIGAITTSLAVTSFPVLN 188 (794)
Q Consensus 110 ~lgl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~~~p~~l~~~~~~~l~~~~~~~~-~~~~~~l~lg~~ls~Ts~~vv~ 188 (794)
..-+..++|-.|-++|++...+..||...+-+.-+++..+++.++..+++.....+. ......+.+-++++.+-...=.
T Consensus 48 ~~iig~~l~~~Ga~I~~k~~~~~lkkg~~ll~~K~~~~~~lgl~~~~~fg~~Gi~~g~f~GlS~LAiiaa~~~~NggLY~ 127 (314)
T PF03812_consen 48 NPIIGVFLFCMGAQIDLKSAGKVLKKGGVLLLVKFIIGALLGLLVGKFFGPEGIQSGFFLGLSALAIIAAMTNSNGGLYL 127 (314)
T ss_pred HHHHHHHHHHhccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHHcCccccccccccchHHHHHHHHHhcCCHHHHH
Confidence 334556889999999999999999999999999999999999999988876421000 0125566677777777777667
Q ss_pred HHHHhcCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 003798 189 PILKDLNLLSSEMGRMAIVTAVIGDAIGINIVIAFEAAKQGEGDSVDAVWYLISLVILLAFICIAVRRTMLWIVHKTPVG 268 (794)
Q Consensus 189 ~iL~el~l~~s~~g~l~ls~a~v~D~~~~ill~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~r~~~~~i~~~~~~~ 268 (794)
.+..|++ -++|.|-..+ .-++|.=.+.++++-.+ +
T Consensus 128 aL~~~yG-d~~D~gA~~i--~sl~~GPf~tMl~LG~s------------------------------------------G 162 (314)
T PF03812_consen 128 ALMGQYG-DEEDVGAFSI--LSLNDGPFFTMLALGAS------------------------------------------G 162 (314)
T ss_pred HHHHHhC-CHHHhHHHHH--HHhhhhHHHHHHHHhhc------------------------------------------c
Confidence 7777777 2444443221 11222211111110000 0
Q ss_pred CcccchHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHhcccccccccc
Q 003798 269 KPVSQGYIVGILLGVLVMGFLTDMFGMAIANGPLWLGLVIPDGPPLGATLVERTETLIMEIFMPFAFAVVGMYTDVYAMF 348 (794)
Q Consensus 269 ~~~~e~~~~~il~~~l~~~~~ae~~G~~~~lgaflaGl~i~~~~~~~~~l~~kl~~~~~~~~~PlfF~~~G~~~dl~~l~ 348 (794)
..+..+... -+.+=+++.|+++.|- .+++.+-+.+- ...++|+|-...|..+|+..+.
T Consensus 163 --~a~ip~~~l----------------v~~llP~iiG~iLGNL---D~~~r~fl~~~-~~~lIPF~~f~lGa~inl~~i~ 220 (314)
T PF03812_consen 163 --LANIPWMSL----------------VAALLPIIIGMILGNL---DPDFRKFLAPG-VPILIPFFGFALGAGINLSNII 220 (314)
T ss_pred --ccCCCHHHH----------------HHHHHHHHHHHHHhcC---CHHHHHHHhcC-CCeeeehhhhhhcCCCCHHHHH
Confidence 000000000 1123467888888884 34666666663 7889999999999999999887
Q ss_pred cccccchhhHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHhHHHHHH----HHHHhhhhccccCCchhHHHH
Q 003798 349 EFGWSGLSPLFGMIVTGYISKLLGTLIPSLLC-QMPFRDSLTLSLMMSLRGQVEL----LLYIHWIDKLIIGVPPFTLLV 423 (794)
Q Consensus 349 ~~~~~~~~~~~~i~~~~~l~K~~~~~l~~~~~-~~~~~e~~~lgl~m~~kG~~~l----~~~~~~~~~~ii~~~~~~~lv 423 (794)
+++...+ ++-+..++.-....++.-++. |-+-.- |+..++-+.-++ +++..-.+..-. .+.-++-+
T Consensus 221 ~aGl~GI----lLgv~~~~vtg~~~~~~dr~i~~~~g~a----G~A~sstAGnavatPaaiA~~dP~~~~~-~~~ATaQv 291 (314)
T PF03812_consen 221 KAGLSGI----LLGVIVVVVTGIPLYLADRLILKGNGVA----GAAISSTAGNAVATPAAIAAADPSFAPY-AASATAQV 291 (314)
T ss_pred HhCcchH----HHHHHHHHHHhHHHHHHHHHHcCCCCce----eehHHhhhhhhhhhhHHHHHhChhhHhh-HHHHHHHH
Confidence 3222222 222222222233345555543 333222 333333333322 222222111111 12345556
Q ss_pred HHHHHHHHhHHHHHH-hhcC
Q 003798 424 LSTVVITGIAGPLIS-FLYD 442 (794)
Q Consensus 424 ~~~ll~t~i~~plv~-~l~~ 442 (794)
.+.++.|.+..|++. |.+|
T Consensus 292 AaavIvTail~P~lt~~~~k 311 (314)
T PF03812_consen 292 AAAVIVTAILTPILTSWWAK 311 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 666666777777654 5443
No 54
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=97.14 E-value=0.0041 Score=68.28 Aligned_cols=125 Identities=13% Similarity=0.102 Sum_probs=73.2
Q ss_pred ceEEEEEecCCccHHHHHHHHHHHhcCC--CeEEEEEEeeccCCCCCc-hhhhhhHHHHHHHHHhhcCC-----CCceEE
Q 003798 633 RHHFVVLFLGGADAREALAYADRMVGNL--DVSLTVIRFLSFNHEGDD-EMEKKLDDGLVTWFWVKNES-----NERVRY 704 (794)
Q Consensus 633 ~~~I~v~f~GG~dDreAL~~A~rma~~~--~v~ltvl~~~~~~~~~~~-~~~~~~d~~~l~~~~~~~~~-----~~~v~y 704 (794)
.+||++++.|.+..+.|+++|..+|+.. +++++++|+++....... +...+..++.+++.++.... ...+.+
T Consensus 5 ykkILVavDGSe~S~~Al~~AielA~~~g~~AeL~lL~Vv~~~~~~~~~~~~~~~~eelle~~~~~~~~~l~~~~~gV~v 84 (357)
T PRK12652 5 ANRLLVPVADSVTVRQTVAYAVESAEEAAETPTVHLVAAASGRAVDPEGQDELAAAEELLERVEVWATEDLGDDASSVTI 84 (357)
T ss_pred cCeEEEEeCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEEecCcccccchhHHHHHHHHHHHHHHHHHHHhhhcccCCCce
Confidence 5799999999999999999999999884 699999999975321111 11112233344444433211 134666
Q ss_pred EEEEecC-------hHHHHHHHHhhhccCcccEEEEecccCCCCccccccCCCCCCCccchhhhhhhccCC
Q 003798 705 REVVVRN-------GAETVASIQAVNDEAYCDLWIVGRYQGINGKLLEGLEAWSEDNELGVIGDYVASIDF 768 (794)
Q Consensus 705 ~e~~v~~-------~~~~~~~i~~~~~~~~~DL~iVGr~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~ 768 (794)
..+++.. |......++..++.+ +||+|+|..-...+ .-|-|-+++--|+..+.
T Consensus 85 e~~vv~~~~~~~~~G~pae~Iv~~Aee~~-aDLIVm~~~~~~~~----------~~~~~~~~~~~~~~~~~ 144 (357)
T PRK12652 85 ETALLGTDEYLFGPGDYAEVLIAYAEEHG-IDRVVLDPEYNPGG----------TAPMLQPLERELARAGI 144 (357)
T ss_pred EEEEEeccccccCCCCHHHHHHHHHHHcC-CCEEEECCCCCCCC----------CCcccchHHHHHHhcCC
Confidence 5555531 322222233333222 89999999743321 13445555555655543
No 55
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=97.12 E-value=0.26 Score=52.79 Aligned_cols=152 Identities=11% Similarity=0.026 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhccChhHHHhcC---chhhHHHHHHHHHHHHHHHHHHHHhhccCCcchhhHHHHHHHHHHH
Q 003798 103 LVVRSVGIMAFMYFMFIAGIKMDFTLLKRCG---RKHVYIAVTGVIIPTATSAAVAFLTRKSMDPELAKVSSIGAITTSL 179 (794)
Q Consensus 103 ~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~---~~~~~ia~~~~~~p~~l~~~~~~~l~~~~~~~~~~~~~~l~lg~~l 179 (794)
.+++..-...+.++||..|+.+..+++++.. |........++.+-=+++++++.++. . +++.....++++.+=
T Consensus 34 ~~~~~~~~~~l~lImf~mGl~Ls~~d~~~~~~~p~~vligl~~qfvlmPlla~~~~~~~~--l--~~~l~~Gl~ll~~~P 109 (319)
T COG0385 34 GWLGSAIPIALALIMFGMGLTLSREDFLAGLKHPRLVLIGLAAQFVLMPLLALLLAKLFP--L--PPELAVGLLLLGCCP 109 (319)
T ss_pred hhhhHHHHHHHHHHHHhcCCCCCHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHcC--C--CHHHHHhHHheeeCC
Confidence 3444456889999999999999999998544 44444445555555556666666664 2 111122222333333
Q ss_pred hhccHHHHHHHHHhcCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--c-hhHHHHHHHHHHHHHHHHHHHHH
Q 003798 180 AVTSFPVLNPILKDLNLLSSEMGRMAIVTAVIGDAIGINIVIAFEAAKQGEGD--S-VDAVWYLISLVILLAFICIAVRR 256 (794)
Q Consensus 180 s~Ts~~vv~~iL~el~l~~s~~g~l~ls~a~v~D~~~~ill~v~~~~~~~~~~--~-~~~l~~~~~~~~~~~~~~~v~r~ 256 (794)
+.|++ .+...+. +.++ -++++.+.++.+++.++.-+...+..++.. + +..++.++..++.=.+.+.+.|+
T Consensus 110 ggv~S-~~~t~lA-----kGnV-alsV~~tsvStll~~f~tPllv~l~~~~~v~~~~~~m~~~i~~~vllP~~LG~~~r~ 182 (319)
T COG0385 110 GGVAS-NAMTYLA-----KGNV-ALSVCSTSVSTLLGPFLTPLLVGLLAGGGVPVDVGGMFLSILLQVLLPFVLGQLLRP 182 (319)
T ss_pred CchhH-HHHHHHh-----cCcH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333 2222222 2222 466677888888888877666654433322 1 34445555555444556667777
Q ss_pred HHHHHHHhC
Q 003798 257 TMLWIVHKT 265 (794)
Q Consensus 257 ~~~~i~~~~ 265 (794)
....+.++.
T Consensus 183 ~~~~~~~~~ 191 (319)
T COG0385 183 LLPKWVERL 191 (319)
T ss_pred HHHHHHHHH
Confidence 776555553
No 56
>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms]
Probab=97.07 E-value=0.008 Score=57.18 Aligned_cols=137 Identities=20% Similarity=0.208 Sum_probs=81.4
Q ss_pred ceeEEEec-cCCchHHHHHHHHhhCCCCCCCceEEEEEEeeecCCCccccccccccC----CCCCCCcchHHHHHHHHhh
Q 003798 464 LRLVVCVH-EEESVAGLINLLEVSCPTVDSPFSIYSLHLIELIGRGIPLLVDYENEE----HSPEYTNDDAIHNALKLYS 538 (794)
Q Consensus 464 lriLv~v~-~~~~~~~li~l~~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~----~~~~~~~~~~i~~af~~~~ 538 (794)
.++++.+. ..+........+...+.... ..++.+++++-.+............. ........++..+..++..
T Consensus 6 ~~il~~~d~~s~~~~~a~~~a~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (154)
T COG0589 6 KKILVAVDVGSEAAEKALEEAVALAKRLG--APLILLVVIDPLEPTALVSVALADAPIPLSEEELEEEAEELLAEAKALA 83 (154)
T ss_pred ceEEEEeCCCCHHHHHHHHHHHHHHHhcC--CeEEEEEEecccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHH
Confidence 57888888 77777777777766655444 45557776654432221111000000 0001122345555445443
Q ss_pred hhcCceE-EEEeEEeccCCCh-hHHHHHHHHhcCCcEEEecCCCCCCCCCCCccccccc-hhHHHHHhhccCCCceEEE
Q 003798 539 ETRGELK-FNAFTALAPMRSM-YQNICELALDNKATLIILPFHKEYPNNLEGTQILRRG-VQSVNIKVLSHAPCSVGVL 614 (794)
Q Consensus 539 ~~~~~v~-v~~~~~vs~~~~m-~~dI~~~A~~~~a~lIilp~h~~~~~d~~g~~~~~~~-~~~~n~~vl~~ApCsVgIl 614 (794)
+. ..+. ++....- .+. .+.|+..|.+.++|+|++|.+++.+.+ +- ++++.++|++++||||-|.
T Consensus 84 ~~-~~~~~~~~~~~~---g~~~~~~i~~~a~~~~adliV~G~~g~~~l~--------~~llGsvs~~v~~~~~~pVlvv 150 (154)
T COG0589 84 EA-AGVPVVETEVVE---GSPSAEEILELAEEEDADLIVVGSRGRSGLS--------RLLLGSVAEKVLRHAPCPVLVV 150 (154)
T ss_pred HH-cCCCeeEEEEec---CCCcHHHHHHHHHHhCCCEEEECCCCCcccc--------ceeeehhHHHHHhcCCCCEEEE
Confidence 33 3333 2322222 244 699999999999999999998664332 23 8999999999999999775
No 57
>COG3493 CitS Na+/citrate symporter [Energy production and conversion]
Probab=97.03 E-value=0.086 Score=56.68 Aligned_cols=287 Identities=13% Similarity=0.105 Sum_probs=141.1
Q ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHhh------ccChhHHHhcCchhhHHHHHHHHHHHHHHHHHHHHhhccCCcchhhH
Q 003798 96 MLPDNSQLVVRSVGIMAFMYFMFIAGI------KMDFTLLKRCGRKHVYIAVTGVIIPTATSAAVAFLTRKSMDPELAKV 169 (794)
Q Consensus 96 lfp~~~~~~l~~l~~lgl~~llF~~Gl------e~d~~~l~~~~~~~~~ia~~~~~~p~~l~~~~~~~l~~~~~~~~~~~ 169 (794)
++|++..+....+.+=.-.+.+|.+++ .||.+.+-|...+-+...+.+++...+.+.+++..++........ .
T Consensus 94 llp~~~i~avt~fm~~snFL~fyIA~LI~GSILgmnRklLIk~~~~~i~~il~g~v~A~~~g~lVG~~~G~~~~d~~m-~ 172 (438)
T COG3493 94 LLPSNVIKAVTNFMGKSNFLDFYIAALIVGSILGMNRKLLIKSLKRYIPPILAGMVGAAAVGILVGLLFGLSFQDTMM-Y 172 (438)
T ss_pred cCCHHHHHHHHHHhcCCChHHHHHHHHHHhhhhhccHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhCCChHHeee-e
Confidence 345555555555555455556676665 678888888888887777777777777777787777654320000 0
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHhcCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcC------CCC-----c----h
Q 003798 170 SSIGAITTSLAVTSFPVLNPILKDLNLLSSEMGRMAIVTAVIGDAIGINIVIAFEAAKQG------EGD-----S----V 234 (794)
Q Consensus 170 ~~~l~lg~~ls~Ts~~vv~~iL~el~l~~s~~g~l~ls~a~v~D~~~~ill~v~~~~~~~------~~~-----~----~ 234 (794)
...-.+|--.-.-+.|..--.-+-.+..+.+.-..++.+..+.++++++.-++.--+... ++. + .
T Consensus 173 ~vlPIM~GG~GaGavPLS~iYs~itg~s~~~~~s~lipal~igNvfAIi~aall~~iG~K~psltGnG~Lv~~~~~~~~~ 252 (438)
T COG3493 173 VVLPIMGGGMGAGAVPLSEIYSSITGGSQEEYFSQLIPALTIGNVFAIICAALLNKIGKKKPSLTGNGELVRSKSKEATE 252 (438)
T ss_pred EEeeeccCCCCCCcccHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCccCCceEEeccccchhh
Confidence 000000100001111211111111233445566677778888888887766554433211 000 0 0
Q ss_pred -h-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcccchHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHh
Q 003798 235 -D-------AVWYLISLVILLAFICIAVRRTMLWIVHKTPVGKPVSQGYIVGILLGVLVMGFLTDMFGMAIANGPLWLGL 306 (794)
Q Consensus 235 -~-------~l~~~~~~~~~~~~~~~v~r~~~~~i~~~~~~~~~~~e~~~~~il~~~l~~~~~ae~~G~~~~lgaflaGl 306 (794)
. -...+.. -....+.++....++..+.. .| + .+ +...+.+.+-...+
T Consensus 253 ee~~~~~k~d~~~~g~-G~llA~~lf~~g~il~kf~~-~P-~-----~v-----a~MIil~a~lk~~n------------ 307 (438)
T COG3493 253 EELEKEGKLDLKLMGA-GMLLACTLFMAGGILGKFIG-LP-G-----PV-----AFMIILVAILKAAN------------ 307 (438)
T ss_pred hhhhhccCccHHHHHH-HHHHHHHHHHHHHHHHHhhc-CC-c-----hH-----HHHHHHHHHHHHhC------------
Confidence 0 0011111 11222333444444433332 12 1 11 11111111112211
Q ss_pred hcCCCCCchhHHHHHHHHH-HHHHHHHHHHHHhccc-ccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHhcCCCh
Q 003798 307 VIPDGPPLGATLVERTETL-IMEIFMPFAFAVVGMY-TDVYAMFEFGWSGLSPLFGMIVTGYISKLLGTLIPSLLCQMPF 384 (794)
Q Consensus 307 ~i~~~~~~~~~l~~kl~~~-~~~~~~PlfF~~~G~~-~dl~~l~~~~~~~~~~~~~i~~~~~l~K~~~~~l~~~~~~~~~ 384 (794)
.+|+ .-++=..++..| ...+.-|+.+ .+|.. +|+.++.. .-+|. -+++.+...++-..+.++.+|+.|+-+
T Consensus 308 lvp~---~i~~GA~~l~~F~sk~~t~~Lm~-giGv~ytdl~ev~~--alt~~-~vii~~~vVl~~i~~~~f~grl~~~YP 380 (438)
T COG3493 308 LVPK---EIEEGAKQLSQFFSKNLTWPLMA-GIGVAYTDLNEVAA--ALTWQ-NVIIALSVVLGAILGGAFVGRLMGFYP 380 (438)
T ss_pred cCCH---HHHHHHHHHHHHHHHhhHHHHHH-hhhhccccHHHHHH--Hhchh-HHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 1232 222333344433 4556666655 44655 78877652 23443 344445556677888999999999766
Q ss_pred HHHHH-HHHHHHhHHH-HHHHHHHhhhhccccC
Q 003798 385 RDSLT-LSLMMSLRGQ-VELLLYIHWIDKLIIG 415 (794)
Q Consensus 385 ~e~~~-lgl~m~~kG~-~~l~~~~~~~~~~ii~ 415 (794)
-|+.. -|+.|+.+|. -++++++.+-..+.++
T Consensus 381 VEaAI~aglC~a~~GGtGDvaVLsAa~RM~Lmp 413 (438)
T COG3493 381 VEAAITAGLCMANMGGTGDVAVLSAADRMELMP 413 (438)
T ss_pred hHHHHHHhHHhcCCCCCCchHHhhhcchhcccc
Confidence 66544 5588888854 4666666555555443
No 58
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=96.98 E-value=0.099 Score=56.35 Aligned_cols=87 Identities=15% Similarity=0.217 Sum_probs=63.5
Q ss_pred cccCCChhHHHHHHHHhhCccccCCchhhhhccCCCCcHH-HHHHHHHHHHHHHHHHHhhccChhHHHhcCchhhHHHHH
Q 003798 64 KPLKQPRVISEMIGGIIVGPSILGRNKKFAEAMLPDNSQL-VVRSVGIMAFMYFMFIAGIKMDFTLLKRCGRKHVYIAVT 142 (794)
Q Consensus 64 ~rl~~P~ii~~IlaGiilGP~~lg~~~~~~~~lfp~~~~~-~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~~~~~ia~~ 142 (794)
+...++.++--|+.|+++|+..++.-+.+. | ... .-+.+-++|.++ .|.++++.++.+.+.+.+.+...
T Consensus 22 ~~~~l~~~~~AillG~~i~n~~~~~~~~~~----~--Gi~~~~k~~Lr~gIVL----lG~~l~~~~i~~~G~~~~~~~~~ 91 (305)
T PF03601_consen 22 FLPGLGALLIAILLGMLIGNLFFGLPARFK----P--GIKFSSKKLLRLGIVL----LGFRLSFSDILALGWKGLLIIII 91 (305)
T ss_pred cccCccHHHHHHHHHHHHhhhccCCcHHHH----h--HHHHHHHHHHHHHHHH----HCccccHHHHHHhCccHHHHHHH
Confidence 346788888999999999973444422211 1 222 235778888875 79999999999999999888888
Q ss_pred HHHHHHHHHHHHH-HHhhc
Q 003798 143 GVIIPTATSAAVA-FLTRK 160 (794)
Q Consensus 143 ~~~~p~~l~~~~~-~~l~~ 160 (794)
.+...+.++..++ .+++.
T Consensus 92 ~v~~~~~~~~~lg~r~~~l 110 (305)
T PF03601_consen 92 VVILTFLLTYWLGRRLFGL 110 (305)
T ss_pred HHHHHHHHHHHHHHHHhCC
Confidence 8888887777776 55544
No 59
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=96.87 E-value=0.046 Score=57.45 Aligned_cols=258 Identities=15% Similarity=0.142 Sum_probs=136.1
Q ss_pred HHHHHHHHhhccChhHHHhcCchhhHHHHHHHHHHHHHHHHHHHHhhccCCcc-hhhHHHHHHHHHHHhhccHHHHHHHH
Q 003798 113 FMYFMFIAGIKMDFTLLKRCGRKHVYIAVTGVIIPTATSAAVAFLTRKSMDPE-LAKVSSIGAITTSLAVTSFPVLNPIL 191 (794)
Q Consensus 113 l~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~~~p~~l~~~~~~~l~~~~~~~-~~~~~~~l~lg~~ls~Ts~~vv~~iL 191 (794)
+..++|-.|-++|++...+..||...+-+.-+.+.++++..++.+++...... .-...+.+.+-++++.|--..=..+.
T Consensus 51 l~~~l~~~Ga~I~~k~~g~~l~kg~~l~~~K~~i~~~~g~~~~~~~g~~Gi~~g~~~GlS~LAiiaA~~nsNggLY~aL~ 130 (314)
T TIGR00793 51 LAVWFFCMGASIDLSATGTVLRKSGTLVVTKIAVAWVVAAIASRIIPEDGVEVGFFAGLSTLALVAAMDMTNGGLYASIM 130 (314)
T ss_pred HHHHHHHhCCeeeecccchhhhhcceeeeHHHHHHHHHHHHHHHHcCcCCccccceeccHHHHHHHHHhCCcHHHHHHHH
Confidence 45678999999999998888888888888899999999999998887532000 00124455566666666656556666
Q ss_pred HhcCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcc
Q 003798 192 KDLNLLSSEMGRMAIVTAVIGDAIGINIVIAFEAAKQGEGDSVDAVWYLISLVILLAFICIAVRRTMLWIVHKTPVGKPV 271 (794)
Q Consensus 192 ~el~l~~s~~g~l~ls~a~v~D~~~~ill~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~r~~~~~i~~~~~~~~~~ 271 (794)
.|++ -++|.|-..+. .++|.=-+.+++ +.. .| .
T Consensus 131 ~qyG-d~~D~gA~~i~--sl~~GPf~TMi~------------------------LG~------------------sG--l 163 (314)
T TIGR00793 131 QQYG-TKEEAGAFVLM--SLESGPLMTMVI------------------------LGT------------------AG--I 163 (314)
T ss_pred HHcC-CHhhhhhhhhh--hhccCcHHHHHH------------------------Hhh------------------cc--C
Confidence 7766 34444432211 112211111000 000 00 0
Q ss_pred cchHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHhccccccccccccc
Q 003798 272 SQGYIVGILLGVLVMGFLTDMFGMAIANGPLWLGLVIPDGPPLGATLVERTETLIMEIFMPFAFAVVGMYTDVYAMFEFG 351 (794)
Q Consensus 272 ~e~~~~~il~~~l~~~~~ae~~G~~~~lgaflaGl~i~~~~~~~~~l~~kl~~~~~~~~~PlfF~~~G~~~dl~~l~~~~ 351 (794)
.+..+.. +-+.+=+++.|+++.|- .+++.+-+.+- ...++|+|-...|..+|++.+.+++
T Consensus 164 A~ip~~~----------------lv~~ilPlliG~ilGNL---D~~~r~fl~~~-~~~lIpFf~FaLGaginl~~i~~aG 223 (314)
T TIGR00793 164 ASFEPHV----------------FVGAVLPFLVGFALGNL---DPELRDFFSKA-VQTLIPFFAFALGNTIDLGVIIQTG 223 (314)
T ss_pred CCCCHHH----------------HHHHHHHHHHHHHHhcC---CHHHHHHhccC-CCeeeehhhhhhcCCCCHHHHHHhC
Confidence 0111110 01123467888888884 34555666553 6788999999999999998886211
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHhcC-CChHHHHHHHHHHHhHHHHHHHHHHhhhhccccCCchhHHHHHHHHHHH
Q 003798 352 WSGLSPLFGMIVTGYISKLLGTLIPSLLCQ-MPFRDSLTLSLMMSLRGQVELLLYIHWIDKLIIGVPPFTLLVLSTVVIT 430 (794)
Q Consensus 352 ~~~~~~~~~i~~~~~l~K~~~~~l~~~~~~-~~~~e~~~lgl~m~~kG~~~l~~~~~~~~~~ii~~~~~~~lv~~~ll~t 430 (794)
...+ ++-+...+.--...++.-|+.+ -+..-....+-.-..--.+..+++..-.+..- -.+.-++.+.++++.|
T Consensus 224 l~GI----lLGl~v~~vtG~~~~~~dr~~~g~~g~aG~A~sstAGnAvatPaavA~adPs~~~-~a~~ATaqvAaavivT 298 (314)
T TIGR00793 224 LLGI----LLGVSVIILTGIPLILADKFIGGGDGTAGIAASSSAGAAVATPVLIAEMVPAFKP-VAPAATALVATSVIVT 298 (314)
T ss_pred cchH----HHHHHHHHHHhHHHHHHHHHhcCCCCchhhHHHHHHHHhhhhHHHHHHhChhhhh-hHHHHHHHHHHHHHHH
Confidence 1122 2112222223344555666553 22222333222111111112222222111111 1234556677777778
Q ss_pred HhHHHHHH-hhcC
Q 003798 431 GIAGPLIS-FLYD 442 (794)
Q Consensus 431 ~i~~plv~-~l~~ 442 (794)
.+..|++. |++|
T Consensus 299 aiL~Pilta~~~k 311 (314)
T TIGR00793 299 SLLVPIATVWWSK 311 (314)
T ss_pred HHHHHHHHHHHHH
Confidence 88877765 5454
No 60
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=96.86 E-value=0.43 Score=52.09 Aligned_cols=122 Identities=11% Similarity=0.133 Sum_probs=75.6
Q ss_pred HHHHHHHHHHhc-----hhhhHHHHHHHhhcCCCCCc--hhHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccch
Q 003798 283 VLVMGFLTDMFG-----MAIANGPLWLGLVIPDGPPL--GATLVERTETLIMEIFMPFAFAVVGMYTDVYAMFEFGWSGL 355 (794)
Q Consensus 283 ~l~~~~~ae~~G-----~~~~lgaflaGl~i~~~~~~--~~~l~~kl~~~~~~~~~PlfF~~~G~~~dl~~l~~~~~~~~ 355 (794)
+.+..++.+.++ +....++++.|+++.+-.+. ..++.++.-+.+.+.-+-+|.++.=|++.+..+. .-..
T Consensus 231 ~~vG~~i~~~l~~~~~~lP~fv~~lfvgiIvrni~~~~~~~~v~~~~v~~ig~vsL~lflamALmSlkLweL~---~l~l 307 (404)
T COG0786 231 LAVGKIINQLLKSLGLALPLFVMCLFVGVILRNILDLLKKYRVFRRAVDVIGNVSLSLFLAMALMSLKLWELA---DLAL 307 (404)
T ss_pred HHHHHHHHHHHhhccccccHHHHHHHHHHHHHhHHHHhccccccHHHHHHHhhhHHHHHHHHHHHHHHHHHHH---hccc
Confidence 333345666655 67789999999999873111 1124444444457788888888888899988886 3334
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHh-HHHHHHHHHHh
Q 003798 356 SPLFGMIVTGYISKLLGTLIPSLLCQMPFRDSLTLSLMMSL-RGQVELLLYIH 407 (794)
Q Consensus 356 ~~~~~i~~~~~l~K~~~~~l~~~~~~~~~~e~~~lgl~m~~-kG~~~l~~~~~ 407 (794)
...+++.+-..+.-+.+.++..|..|-++..+..-+.-++. -|...-+++++
T Consensus 308 pl~viL~vQ~i~m~lfa~fvtfr~mG~~YdAaV~~~G~~G~gLGATPtAianM 360 (404)
T COG0786 308 PLLVILAVQTIVMALFAIFVTFRLMGKNYDAAVLAAGHCGFGLGATPTAIANM 360 (404)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhCcchhHHHHhcccccCccCCcHHHHHhh
Confidence 44455555555556667777788888887666553333322 24455555554
No 61
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=96.81 E-value=0.61 Score=51.84 Aligned_cols=92 Identities=13% Similarity=0.191 Sum_probs=54.3
Q ss_pred chhhhHHHHHHHhhcCCC------CCchhHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccchhhHHHHHHHHHH
Q 003798 294 GMAIANGPLWLGLVIPDG------PPLGATLVERTETLIMEIFMPFAFAVVGMYTDVYAMFEFGWSGLSPLFGMIVTGYI 367 (794)
Q Consensus 294 G~~~~lgaflaGl~i~~~------~~~~~~l~~kl~~~~~~~~~PlfF~~~G~~~dl~~l~~~~~~~~~~~~~i~~~~~l 367 (794)
.+....+|++.|+++.+. ....++..+++ .++.+-+|.+..=+++++..+. .......+++++-.++
T Consensus 246 ~lP~f~~ami~g~ivrn~~~~~~~~~id~~~i~~I----~~~sL~~fl~~almsl~l~~l~---~~a~Plliil~~q~i~ 318 (368)
T PF03616_consen 246 TLPLFVGAMIVGIIVRNILDKTGKYKIDRKTIDRI----SGISLDLFLAMALMSLKLWVLA---DYALPLLIILAVQTIL 318 (368)
T ss_pred CCchHHHHHHHHHHHHHHHHHhCcccCCHHHHHHH----HHHHHHHHHHHHHHhccHHHHH---HHHHHHHHHHHHHHHH
Confidence 356789999999998762 11233344444 5555555666666788888876 2222333333444444
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHH
Q 003798 368 SKLLGTLIPSLLCQMPFRDSLTLSLM 393 (794)
Q Consensus 368 ~K~~~~~l~~~~~~~~~~e~~~lgl~ 393 (794)
.=+...++..|..|-++ |+..++..
T Consensus 319 ~~~f~~fv~fr~~gkdy-daavm~~G 343 (368)
T PF03616_consen 319 MVLFAYFVTFRVMGKDY-DAAVMSAG 343 (368)
T ss_pred HHHHHHHHhhhhhCCCh-hHHHHhhh
Confidence 44555666777888776 66665443
No 62
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=96.79 E-value=0.24 Score=54.91 Aligned_cols=283 Identities=14% Similarity=0.154 Sum_probs=154.1
Q ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHh------hccChhHHHhcCchhhHHHHHHHHHHHHHHHHHHHHhhccCCcchhhH
Q 003798 96 MLPDNSQLVVRSVGIMAFMYFMFIAG------IKMDFTLLKRCGRKHVYIAVTGVIIPTATSAAVAFLTRKSMDPELAKV 169 (794)
Q Consensus 96 lfp~~~~~~l~~l~~lgl~~llF~~G------le~d~~~l~~~~~~~~~ia~~~~~~p~~l~~~~~~~l~~~~~~~~~~~ 169 (794)
++|++..+..+.+.+-.=.+.+|.+. +.||.+.+.|...|-+..-+.+.+..++++.+++.+++....
T Consensus 77 ~ip~~~~~~v~~fm~~~~Fl~ffIa~LI~GSILgm~RklLika~~r~~p~il~g~~~a~~~g~lvG~l~G~~~~------ 150 (414)
T PF03390_consen 77 LIPESVVEAVTNFMKGSNFLYFFIAALIVGSILGMNRKLLIKAFARFIPPILGGVIGAFLLGGLVGMLFGYSFK------ 150 (414)
T ss_pred CCCHHHHHHHHHHhccCChHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH------
Confidence 34544445554444333233344433 389999999999999988889999999999999988877542
Q ss_pred HHHHHHHHHH-----hhccHHHHHHHHHhcCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-------------C
Q 003798 170 SSIGAITTSL-----AVTSFPVLNPILKDLNLLSSEMGRMAIVTAVIGDAIGINIVIAFEAAKQGE-------------G 231 (794)
Q Consensus 170 ~~~l~lg~~l-----s~Ts~~vv~~iL~el~l~~s~~g~l~ls~a~v~D~~~~ill~v~~~~~~~~-------------~ 231 (794)
...+.+++-. ..-+.|..--.-+-++....+.-..++.+.++.++++++.-++.-.+.... .
T Consensus 151 ~~i~~i~lPIMgGG~GaGavPLS~~Ya~~~g~~~~~~~s~~ipa~~lgNi~AIi~aglL~~lg~~~P~ltGnG~L~~~~~ 230 (414)
T PF03390_consen 151 DAIFYIVLPIMGGGMGAGAVPLSQIYAEALGQDAEEYFSQLIPALTLGNIFAIIFAGLLNKLGKKKPKLTGNGQLLKGGD 230 (414)
T ss_pred HHHHHHHhhhcCCCccccHhHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCceEEeCCc
Confidence 2222222211 112223222222223444555666677777888888877666555442210 0
Q ss_pred ---C--c---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcccchHHHHHHHHHHHHHHHHHHhchhhhHHHHH
Q 003798 232 ---D--S---VDAVWYLISLVILLAFICIAVRRTMLWIVHKTPVGKPVSQGYIVGILLGVLVMGFLTDMFGMAIANGPLW 303 (794)
Q Consensus 232 ---~--~---~~~l~~~~~~~~~~~~~~~v~r~~~~~i~~~~~~~~~~~e~~~~~il~~~l~~~~~ae~~G~~~~lgafl 303 (794)
. . ...-..-...-++..+.+|....+...+. + .+ .+...++..+ +...+|
T Consensus 231 ~~~~~~~~~~~~~~~~~~g~Gllla~~~y~~G~ll~~~i-----~--ih-~~a~mIi~~~-----i~K~~~--------- 288 (414)
T PF03390_consen 231 DEEEEAKKKEKPIDFSDMGAGLLLACSFYILGVLLSKLI-----G--IH-AYAWMIILVA-----IVKAFG--------- 288 (414)
T ss_pred cccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhc-----C--Cc-HHHHHHHHHH-----HHHHhC---------
Confidence 0 0 00001111222233344444444444443 0 11 2222222111 122222
Q ss_pred HHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHhccc-ccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHhcCC
Q 003798 304 LGLVIPDGPPLGATLVERTETLIMEIFMPFAFAVVGMY-TDVYAMFEFGWSGLSPLFGMIVTGYISKLLGTLIPSLLCQM 382 (794)
Q Consensus 304 aGl~i~~~~~~~~~l~~kl~~~~~~~~~PlfF~~~G~~-~dl~~l~~~~~~~~~~~~~i~~~~~l~K~~~~~l~~~~~~~ 382 (794)
++|+ .-++=.++...|...-+.+-..+-+|+. +|+.++.+ .-++. .+++++...++-.+++++.+++.|+
T Consensus 289 ---lvP~---~~e~~a~~~~~f~~~~lt~~lLvgiGv~~~~l~~l~~--a~t~~-~vv~~~~~Vl~~~~~a~~vG~l~g~ 359 (414)
T PF03390_consen 289 ---LVPE---SLEEGAKQWYKFFSKNLTWPLLVGIGVAYTDLNDLIA--AFTPQ-YVVIVLATVLGAVIGAFLVGKLVGF 359 (414)
T ss_pred ---cCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcHHHHHH--HhCHH-HHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 1333 2334445555555666666667777887 89888752 22343 4556666777888999999999997
Q ss_pred ChHH-HHHHHHHHHhH-HHHHHHHHHhhhhccccC
Q 003798 383 PFRD-SLTLSLMMSLR-GQVELLLYIHWIDKLIIG 415 (794)
Q Consensus 383 ~~~e-~~~lgl~m~~k-G~~~l~~~~~~~~~~ii~ 415 (794)
-+-| ++.-|+.|+.+ |.-+++++..+.+.+++.
T Consensus 360 YPvEsAItaGLC~an~GGtGDvAVLsAa~RM~Lmp 394 (414)
T PF03390_consen 360 YPVESAITAGLCMANMGGTGDVAVLSAANRMELMP 394 (414)
T ss_pred ChHHHHHHhhhcccCCCCCCcchheehhhhccccc
Confidence 6655 45566577666 455677776666665543
No 63
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=96.67 E-value=0.43 Score=51.85 Aligned_cols=112 Identities=15% Similarity=0.167 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHHHhhccChhHHHhcC---chhhHHHHHHHHHHHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHhhc
Q 003798 106 RSVGIMAFMYFMFIAGIKMDFTLLKRCG---RKHVYIAVTGVIIPTATSAAVAFLTRKSMDPELAKVSSIGAITTSLAVT 182 (794)
Q Consensus 106 ~~l~~lgl~~llF~~Gle~d~~~l~~~~---~~~~~ia~~~~~~p~~l~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~T 182 (794)
+....+++..++|..|+.++.+++++.. |.....-...+++.=++++++...+....+ ..+..|......
T Consensus 30 ~~~~~~~v~~iFf~~Gl~L~~~~l~~~~~~~~~~l~~~~~~fvl~Pll~~~~~~l~~~~~~-------~~l~~Gl~~~~~ 102 (313)
T PF13593_consen 30 EYVIKYGVALIFFISGLSLPTEELKAALRNWRLHLFVQAFNFVLFPLLGFGLSRLFPAFLP-------PELALGLLILAC 102 (313)
T ss_pred hhhHHHHHHHHHHHHcCCCCHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhccCC-------HHHHHHHHHHhh
Confidence 4677788888889999999999998644 333433334444444456666655543221 223344333222
Q ss_pred cHH-HHHH-HHHhcCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003798 183 SFP-VLNP-ILKDLNLLSSEMGRMAIVTAVIGDAIGINIVIAFEAAK 227 (794)
Q Consensus 183 s~~-vv~~-iL~el~l~~s~~g~l~ls~a~v~D~~~~ill~v~~~~~ 227 (794)
-++ +.+. .+++.- +.+ -..++..+.++.++++++.-+...+.
T Consensus 103 lPtTv~S~v~~T~~A--gGN-~a~Al~~~~~snllgv~ltP~ll~l~ 146 (313)
T PF13593_consen 103 LPTTVSSSVVLTRLA--GGN-VALALFNAVLSNLLGVFLTPLLLLLL 146 (313)
T ss_pred CCchhhHHHHHHHHc--CCC-HHHHHHHHHHHhhhhHhHHHHHHHHH
Confidence 111 1111 123222 222 24566677788888887776555543
No 64
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=96.51 E-value=0.9 Score=49.74 Aligned_cols=103 Identities=11% Similarity=0.058 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHhhccChhHHHhcCchhh---HHHHHHHHHHHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHhhccHH
Q 003798 109 GIMAFMYFMFIAGIKMDFTLLKRCGRKHV---YIAVTGVIIPTATSAAVAFLTRKSMDPELAKVSSIGAITTSLAVTSFP 185 (794)
Q Consensus 109 ~~lgl~~llF~~Gle~d~~~l~~~~~~~~---~ia~~~~~~p~~l~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~ 185 (794)
..++++++||-.|++++++++++..|+.. ..-+.++++-=+++++++..+.... ..+.+|..+....+.
T Consensus 45 ~~~~l~~mmf~mgl~L~~~df~~~~~~pk~~~~~~~~qfvi~Plla~~l~~l~~~~~--------p~l~~GliLv~~~Pg 116 (328)
T TIGR00832 45 IAIGLILMMYPPLAKVDYSALGDVFKDPKGLILSLFINWIIGPFLMFLLAWLFLRDL--------FEYIAGLILLGLARC 116 (328)
T ss_pred HHHHHHHHHHHhhhcCCHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHcCCC--------HHHHHHHHHHHhcch
Confidence 33566789999999999999987555443 3333344333335666665543221 124455444332222
Q ss_pred -HHHHHHHhcCccCChhHHHHHHHHHHHHHHHHHHHHH
Q 003798 186 -VLNPILKDLNLLSSEMGRMAIVTAVIGDAIGINIVIA 222 (794)
Q Consensus 186 -vv~~iL~el~l~~s~~g~l~ls~a~v~D~~~~ill~v 222 (794)
+.+...+.+- +.+. .++++...++-+++.++.-.
T Consensus 117 g~~S~v~T~lA--kGnv-alsv~lt~~stLl~~~~~P~ 151 (328)
T TIGR00832 117 IAMVFVWNQLA--KGDP-EYTLVLVAVNSLFQVFLYAP 151 (328)
T ss_pred HHHHHHHHHHc--CCCH-HHHHHHHHHHHHHHHHHHHH
Confidence 2333344433 3333 25555566677766655533
No 65
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=96.44 E-value=0.093 Score=62.54 Aligned_cols=133 Identities=15% Similarity=0.126 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCC-CCCchhHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccc
Q 003798 276 IVGILLGVLVMGFLTDMFGMAIANGPLWLGLVIPD-GPPLGATLVERTETLIMEIFMPFAFAVVGMYTDVYAMFEFGWSG 354 (794)
Q Consensus 276 ~~~il~~~l~~~~~ae~~G~~~~lgaflaGl~i~~-~~~~~~~l~~kl~~~~~~~~~PlfF~~~G~~~dl~~l~~~~~~~ 354 (794)
+.+.++.+.++..++..+|+++++|=.++|+++.. +...-.. .+.++.+ ..+-+.++...+|+++|+..+.+ .
T Consensus 10 ~~~~l~~a~i~~~l~~rl~lp~vlgyilaGillGP~~lg~i~~-~~~i~~l-aelGvv~LlF~iGLEl~~~~l~~----~ 83 (621)
T PRK03562 10 ALIYLGAAVLIVPIAVRLGLGSVLGYLIAGCIIGPWGLRLVTD-VESILHF-AEFGVVLMLFVIGLELDPQRLWK----L 83 (621)
T ss_pred HHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhCcccccCCCC-HHHHHHH-HHHHHHHHHHHHHhCcCHHHHHH----H
Confidence 44556666777788899999999999999999853 2111111 2335554 67777788888999999988751 1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhHHHHHHHHHHhhhhccccCC
Q 003798 355 LSPLFGMIVTGYISKLLGTLIPSLLCQMPFRDSLTLSLMMSLRGQVELLLYIHWIDKLIIGV 416 (794)
Q Consensus 355 ~~~~~~i~~~~~l~K~~~~~l~~~~~~~~~~e~~~lgl~m~~kG~~~l~~~~~~~~~~ii~~ 416 (794)
...++.+-..-++.-++..+..++++|.+|..++.+|..+..-.. .+ ......|.+.+..
T Consensus 84 ~~~~~~~g~~qv~~~~~~~~~~~~~~g~~~~~al~ig~~la~SSt-ai-v~~~L~e~~~l~t 143 (621)
T PRK03562 84 RRSIFGGGALQMVACGGLLGLFCMLLGLRWQVALLIGLGLALSST-AI-AMQAMNERNLMVT 143 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH-HH-HHHHHHHhccccC
Confidence 111111111122222333345566789999999999987655433 22 2444445554443
No 66
>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]
Probab=96.29 E-value=0.82 Score=49.09 Aligned_cols=180 Identities=14% Similarity=0.133 Sum_probs=91.7
Q ss_pred hHHHHHHHHhhCccccCCchhhhhccCCCCcHHHHHHHHHHHHHHHHHHHhhccChhHHHhcCchhhHHH---HHHHHHH
Q 003798 71 VISEMIGGIIVGPSILGRNKKFAEAMLPDNSQLVVRSVGIMAFMYFMFIAGIKMDFTLLKRCGRKHVYIA---VTGVIIP 147 (794)
Q Consensus 71 ii~~IlaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~~~~~ia---~~~~~~p 147 (794)
+.-.+++|+.+|-..-+.. +.+ ..-+...++.--.+|+++.|+=.=+++|++++++..|+.-.+. ....++-
T Consensus 20 v~l~i~~Gi~lG~~~p~~~----~~l-~~~~~~~~sipiai~L~~MmYP~m~ki~~~~~~~v~k~~k~L~lsL~~Nwii~ 94 (342)
T COG0798 20 VFLAIAIGILLGVHFPGLA----QLL-GKLEFGGVSIPIAIGLILMMYPPMLKIDFEELKNVFKDPKPLILSLFVNWIIG 94 (342)
T ss_pred HHHHHHHHHHHHhcccchh----hhc-ccceeCceehhHHHHHHHHHhHHHhcCCHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 5556788999985543311 100 0012334555667888888888888999999987665533222 2222322
Q ss_pred HHHHHHHHHHhhccCCcchhhHHHHHHHHHHHhhccHHHHHHHHHhcCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003798 148 TATSAAVAFLTRKSMDPELAKVSSIGAITTSLAVTSFPVLNPILKDLNLLSSEMGRMAIVTAVIGDAIGINIVIAFEAAK 227 (794)
Q Consensus 148 ~~l~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~l~~s~~g~l~ls~a~v~D~~~~ill~v~~~~~ 227 (794)
=++.+++++++.+..+ ......+.+|++=|.. -..+- . ++.+.+. ..++....+||++.+++++....+.
T Consensus 95 P~lm~~la~~fl~~~p---ey~~GlILlglApC~a-MVivw---~--~La~Gd~-~~tlv~Va~n~l~qiv~y~~~~~~~ 164 (342)
T COG0798 95 PLLMFALAWFFLPDEP---EYRAGLILLGLAPCIA-MVIVW---S--GLAKGDR-ELTLVLVAFNSLLQIVLYAPLGKFF 164 (342)
T ss_pred HHHHHHHHHHHhCCCH---HHHHHHHHHHhhhhHH-HHHHH---H--hhccCcH-hhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 2334455555553321 1122333344333322 12122 2 3333332 4556667789999998886655433
Q ss_pred cCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 003798 228 QGEGDSVDAVWYLISLVILLAFICIAVRRTMLWIVHKT 265 (794)
Q Consensus 228 ~~~~~~~~~l~~~~~~~~~~~~~~~v~r~~~~~i~~~~ 265 (794)
-+......+.+.++..+...+.+-++.+.+.+++..|.
T Consensus 165 l~v~~~~v~~~~i~~Sv~lyl~iPli~G~lTR~i~~k~ 202 (342)
T COG0798 165 LGVISISVPFWTIAKSVLLYLGIPLIAGVLTRYILIKK 202 (342)
T ss_pred HhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 22221112344444444444444555555555555553
No 67
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=96.18 E-value=0.16 Score=54.07 Aligned_cols=140 Identities=15% Similarity=0.178 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHhchhhhHHHHHHHhhcCCC-CCchhHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccchhhHHH
Q 003798 282 GVLVMGFLTDMFGMAIANGPLWLGLVIPDG-PPLGATLVERTETLIMEIFMPFAFAVVGMYTDVYAMFEFGWSGLSPLFG 360 (794)
Q Consensus 282 ~~l~~~~~ae~~G~~~~lgaflaGl~i~~~-~~~~~~l~~kl~~~~~~~~~PlfF~~~G~~~dl~~l~~~~~~~~~~~~~ 360 (794)
.....+.+++.++++.++|-.++|+++... ...- .-.+.++.+ ..+-+.++....|+++|++.+.+ .+.....
T Consensus 3 ~a~~~~~l~~~l~lP~~v~~il~GillGp~~lg~i-~~~~~~~~l-~~igl~~llF~~Gl~~d~~~l~~----~~~~~~~ 76 (273)
T TIGR00932 3 AAVLAVPLSRRLGIPSVLGYLLAGVLIGPSGLGLI-SNVEGVNHL-AEFGVILLMFLIGLELDLERLWK----LRKAAFG 76 (273)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhCcccccCC-CChHHHHHH-HHHHHHHHHHHHHhCCCHHHHHH----HHHHHHH
Confidence 344567888999999999999999998642 1110 111234554 56667777888999999988862 2222233
Q ss_pred HHHHHHHHH-HHHHHHHHHhcCCChHHHHHHHHHHHhHHHHHHHHHHhhhhccccCCchhHHHHHHHHHH
Q 003798 361 MIVTGYISK-LLGTLIPSLLCQMPFRDSLTLSLMMSLRGQVELLLYIHWIDKLIIGVPPFTLLVLSTVVI 429 (794)
Q Consensus 361 i~~~~~l~K-~~~~~l~~~~~~~~~~e~~~lgl~m~~kG~~~l~~~~~~~~~~ii~~~~~~~lv~~~ll~ 429 (794)
+....++.- ++.++..+++.+.++.+++.+|..+++-. .-+.+.+..|.+..+.+.-..++-.++++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~ls~Ts--~~v~~~il~~~~~~~~~~g~l~l~~~~~~ 144 (273)
T TIGR00932 77 VGVLQVLVPGVLLGLLLGHLLGLALGAAVVIGIILALSS--TAVVVQVLKERGLLKTPFGQTVLGILLFQ 144 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhH--HHHHHHHHHHcCcccChHHHHHHHHHHHH
Confidence 333333333 44445566778999999999999877553 23444555666666655554444444443
No 68
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=96.17 E-value=1.8 Score=48.43 Aligned_cols=93 Identities=12% Similarity=0.156 Sum_probs=55.9
Q ss_pred chhhhHHHHHHHhhcCCCCCch--hHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccchhhHHHHHHHHHHHHH-
Q 003798 294 GMAIANGPLWLGLVIPDGPPLG--ATLVERTETLIMEIFMPFAFAVVGMYTDVYAMFEFGWSGLSPLFGMIVTGYISKL- 370 (794)
Q Consensus 294 G~~~~lgaflaGl~i~~~~~~~--~~l~~kl~~~~~~~~~PlfF~~~G~~~dl~~l~~~~~~~~~~~~~i~~~~~l~K~- 370 (794)
.++...+|++.|+++.+-.+.. ..+.++.-+...++.+-+|.+..=+++++..+. +.+...+++.++.++.-.
T Consensus 244 ~lP~fv~am~~giiirni~~~~~~~~~~~~~i~~I~~~sLdlfl~~AlmsL~L~~l~----~~a~Plliil~~q~i~~~l 319 (398)
T TIGR00210 244 MLPTFVWCLFVGVILRNPLSFKKFPWVAERAVSVIGNVSLSLFLAIALMSLQLWELA----DLAGPIALILLVQVMFMAL 319 (398)
T ss_pred CCCchHHHHHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHHHHHhCcHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 3678999999999988731111 112233333346777777877777899998886 333333344434333333
Q ss_pred HHHHHHHHhcCCChHHHHHHH
Q 003798 371 LGTLIPSLLCQMPFRDSLTLS 391 (794)
Q Consensus 371 ~~~~l~~~~~~~~~~e~~~lg 391 (794)
...++.-+..|-+ .|+..++
T Consensus 320 ~~~fv~fr~mg~~-ydaaV~~ 339 (398)
T TIGR00210 320 YAIFVTFRLMGKD-YDAAVLC 339 (398)
T ss_pred HHHHHhHHhccch-HHHHHHh
Confidence 4455666777766 7776643
No 69
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=96.02 E-value=0.21 Score=53.88 Aligned_cols=130 Identities=14% Similarity=0.124 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHHHH----HhchhhhHHHHHHHhhcCC-CCCchhHHHHHHHHHHHHHHHHHHHHHhcccccccccccccc
Q 003798 278 GILLGVLVMGFLTD----MFGMAIANGPLWLGLVIPD-GPPLGATLVERTETLIMEIFMPFAFAVVGMYTDVYAMFEFGW 352 (794)
Q Consensus 278 ~il~~~l~~~~~ae----~~G~~~~lgaflaGl~i~~-~~~~~~~l~~kl~~~~~~~~~PlfF~~~G~~~dl~~l~~~~~ 352 (794)
+.+++.....++++ ..++++.+=|.+.|+++.| .....+...+-++.. ...++.+=-+..|.++++.++. .
T Consensus 5 l~~~ia~~a~~l~~~~~~~~~l~~~~~AillG~~i~n~~~~~~~~~~~Gi~~~-~k~~Lr~gIVLlG~~l~~~~i~---~ 80 (305)
T PF03601_consen 5 LCFAIAILAYFLASLPFFLPGLGALLIAILLGMLIGNLFFGLPARFKPGIKFS-SKKLLRLGIVLLGFRLSFSDIL---A 80 (305)
T ss_pred HHHHHHHHHHHHHhCcccccCccHHHHHHHHHHHHhhhccCCcHHHHhHHHHH-HHHHHHHHHHHHCccccHHHHH---H
Confidence 34444445555555 3678888899999999998 544455555555543 5688898899999999999887 3
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhHHHHHHHHHHhhhhc
Q 003798 353 SGLSPLFGMIVTGYISKLLGTLIPSLLCQMPFRDSLTLSLMMSLRGQVELLLYIHWIDK 411 (794)
Q Consensus 353 ~~~~~~~~i~~~~~l~K~~~~~l~~~~~~~~~~e~~~lgl~m~~kG~~~l~~~~~~~~~ 411 (794)
..+......++...+.=.++.++..|.+|++.+.+..++...+.-|.-+++...-..+.
T Consensus 81 ~G~~~~~~~~~~v~~~~~~~~~lg~r~~~l~~~~~~Lia~GtsICG~SAi~A~a~~i~a 139 (305)
T PF03601_consen 81 LGWKGLLIIIIVVILTFLLTYWLGRRLFGLDRKLAILIAAGTSICGASAIAATAPVIKA 139 (305)
T ss_pred hCccHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhcccchHHHHHHHcccccC
Confidence 44432333333333333444445559999999999999999888888887776655443
No 70
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=96.02 E-value=0.22 Score=59.31 Aligned_cols=115 Identities=15% Similarity=0.204 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCC-CCCchhHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccc
Q 003798 276 IVGILLGVLVMGFLTDMFGMAIANGPLWLGLVIPD-GPPLGATLVERTETLIMEIFMPFAFAVVGMYTDVYAMFEFGWSG 354 (794)
Q Consensus 276 ~~~il~~~l~~~~~ae~~G~~~~lgaflaGl~i~~-~~~~~~~l~~kl~~~~~~~~~PlfF~~~G~~~dl~~l~~~~~~~ 354 (794)
..+.++...++..++..+|+++++|=.++|+++.. ....-.. .+.++.+ ..+-+.++...+|+++|+..+.+ ...
T Consensus 10 ~~~~l~~a~~~~~l~~rl~~p~ilg~ilaGillGP~~lg~i~~-~~~i~~l-aelGvv~LLF~iGLel~~~~l~~--~~~ 85 (601)
T PRK03659 10 GVLFLFAAVVAVPLAQRLGIGAVLGYLLAGIAIGPWGLGFISD-VDEILHF-SELGVVFLMFIIGLELNPSKLWQ--LRR 85 (601)
T ss_pred HHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhccccccCCCc-HHHHHHH-HHHHHHHHHHHHHhcCCHHHHHH--HHH
Confidence 34445555566678888999999999999999854 2111111 1335544 56777777778899999988752 111
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHh
Q 003798 355 LSPLFGMIVTGYISKLLGTLIPSLLCQMPFRDSLTLSLMMSL 396 (794)
Q Consensus 355 ~~~~~~i~~~~~l~K~~~~~l~~~~~~~~~~e~~~lgl~m~~ 396 (794)
.+..+....++.-.+.....+.+.+++|..++.+|..+..
T Consensus 86 --~~~~~g~~~v~~t~~~~~~~~~~~g~~~~~a~~~g~~la~ 125 (601)
T PRK03659 86 --SIFGVGAAQVLLSAAVLAGLLMLTDFSWQAAVVGGIGLAM 125 (601)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 1111111111111212222344568899999888875543
No 71
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=95.98 E-value=0.24 Score=58.48 Aligned_cols=138 Identities=14% Similarity=0.145 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCCC-CCchhHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccchh
Q 003798 278 GILLGVLVMGFLTDMFGMAIANGPLWLGLVIPDG-PPLGATLVERTETLIMEIFMPFAFAVVGMYTDVYAMFEFGWSGLS 356 (794)
Q Consensus 278 ~il~~~l~~~~~ae~~G~~~~lgaflaGl~i~~~-~~~~~~l~~kl~~~~~~~~~PlfF~~~G~~~dl~~l~~~~~~~~~ 356 (794)
.++..++++..++..+|++.++|=.++|+++... ...-+. .+.++.+ ..+-+-++....|+++|++.+.+ .. .
T Consensus 13 ~~l~~a~~~~~l~~rl~~P~ivg~IlaGillGp~~lg~~~~-~~~~~~l-a~lGli~llF~~Gle~d~~~l~~--~~--~ 86 (558)
T PRK10669 13 GGLVLAFILGMLANRLRISPLVGYLLAGVLAGPFTPGFVAD-TKLAPEL-AELGVILLMFGVGLHFSLKDLMA--VK--S 86 (558)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhCccccccccc-hHHHHHH-HHHHHHHHHHHhHhcCCHHHHHH--Hh--h
Confidence 3455666677788889999999999999998542 111111 1334444 56666777778899999988752 11 1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhHHHHHHHHHHhhhhccccCCchhHHHH
Q 003798 357 PLFGMIVTGYISKLLGTLIPSLLCQMPFRDSLTLSLMMSLRGQVELLLYIHWIDKLIIGVPPFTLLV 423 (794)
Q Consensus 357 ~~~~i~~~~~l~K~~~~~l~~~~~~~~~~e~~~lgl~m~~kG~~~l~~~~~~~~~~ii~~~~~~~lv 423 (794)
......+...+.=++.++.....++.++.+++.+|..++.-.. .++.....|.+.++.+.....+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~lg~~ls~tS~--~vv~~~L~e~~~l~s~~G~~~l 151 (558)
T PRK10669 87 IAIPGAIAQIAVATLLGMALSAVLGWSLMTGIVFGLCLSTAST--VVLLRALEERQLIDSQRGQIAI 151 (558)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH--HHHHHHHHhcCcccCcchHHHH
Confidence 1111111122222333444556778999999999987766333 3455566677877776544443
No 72
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=95.95 E-value=3.2 Score=45.16 Aligned_cols=157 Identities=18% Similarity=0.146 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHHHHHHhchh--hhHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHhccccccccccccccc
Q 003798 276 IVGILLGVLVMGFLTDMFGMA--IANGPLWLGLVIPDGPPLGATLVERTETLIMEIFMPFAFAVVGMYTDVYAMFEFGWS 353 (794)
Q Consensus 276 ~~~il~~~l~~~~~ae~~G~~--~~lgaflaGl~i~~~~~~~~~l~~kl~~~~~~~~~PlfF~~~G~~~dl~~l~~~~~~ 353 (794)
+.+.+...++.+.+...+++. .++|+++.|..+.-.....-++-+-+. .+-.-+.-..+|.++|-..+.. -..
T Consensus 190 ~~~l~~~~~~~g~l~~~lr~Pa~~ll~~l~l~a~v~~~~~~~~~lP~wl~----~va~~~iG~~IG~~f~~~~l~~-~~r 264 (352)
T COG3180 190 LLLLILAALLGGLLGKLLRFPAPTLLGPLLLGAIVHFGGGITIQLPAWLL----AVAQALIGALIGSRFDRSILRE-AKR 264 (352)
T ss_pred HHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhhcccceeeeCCHHHH----HHHHHHHHHHHcccccHHHHHH-hHh
Confidence 344444555555566666653 577888888777654322222222222 2223345567899998655541 012
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhHHHHHHHHHHhhhhccccCCchhH-HHHHHHHHHHHh
Q 003798 354 GLSPLFGMIVTGYISKLLGTLIPSLLCQMPFRDSLTLSLMMSLRGQVELLLYIHWIDKLIIGVPPFT-LLVLSTVVITGI 432 (794)
Q Consensus 354 ~~~~~~~i~~~~~l~K~~~~~l~~~~~~~~~~e~~~lgl~m~~kG~~~l~~~~~~~~~~ii~~~~~~-~lv~~~ll~t~i 432 (794)
.....++.++..++.-...+++.+++.+.++.++.. ..+|-|.-+++....+.+. |...-. .=++=.++...+
T Consensus 265 ~~~~~~v~ii~l~~~~~~~a~ll~~~~~i~~~ta~L---a~sPGGl~~ma~~A~~l~a---d~a~V~a~q~lRll~il~i 338 (352)
T COG3180 265 LLPAILVSIIALMAIAAGMAGLLSWLTGIDLNTAYL---ATSPGGLDTMAAIAAALGA---DPAFVMALQVLRLLFILLL 338 (352)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH---HcCCCcHHHHHHHHHHcCC---ChHHHHHHHHHHHHHHHHH
Confidence 233345555555666677778888899999887643 3578888887766555432 222111 112222332334
Q ss_pred HHHHHHhhcCC
Q 003798 433 AGPLISFLYDP 443 (794)
Q Consensus 433 ~~plv~~l~~~ 443 (794)
.|++.|++.+.
T Consensus 339 ~p~l~r~l~~~ 349 (352)
T COG3180 339 GPALARFLSKR 349 (352)
T ss_pred HHHHHHHHHHH
Confidence 46677766543
No 73
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=95.94 E-value=0.29 Score=55.13 Aligned_cols=158 Identities=18% Similarity=0.191 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCC-CCCchhHHHHHHHHHHHHHHHHHHHHHhccccccccccccccc
Q 003798 275 YIVGILLGVLVMGFLTDMFGMAIANGPLWLGLVIPD-GPPLGATLVERTETLIMEIFMPFAFAVVGMYTDVYAMFEFGWS 353 (794)
Q Consensus 275 ~~~~il~~~l~~~~~ae~~G~~~~lgaflaGl~i~~-~~~~~~~l~~kl~~~~~~~~~PlfF~~~G~~~dl~~l~~~~~~ 353 (794)
.+..++..+...+.+.+.+|+++++|-.++|+++.+ +...-.+-.+.++.+ .++=.-++...+|+.+|+..+.+ ...
T Consensus 10 ~~~iiL~~a~i~~~l~~rl~lp~vlg~llaGiilGp~~~~~~~~~~~~i~~l-aelGvi~LlF~~GLE~~~~~l~~-~~~ 87 (397)
T COG0475 10 QLLILLLVAVILGPLFKRLGLPPVLGYLLAGIILGPWGLLLIIESSEIIELL-AELGVVFLLFLIGLEFDLERLKK-VGR 87 (397)
T ss_pred HHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHhcCcccccccCCchHHHHHH-HHHhHHHHHHHHHHCcCHHHHHH-hch
Confidence 355566667777799999999999999999999986 221122222333322 44444556667899999998862 111
Q ss_pred chhhHHHHHHHHHHHHHHHH--HHHHHhcCCChHHHHHHHHHHHhHHHHHHHHHHhhhhccccCCchhHHHHHHHHHHHH
Q 003798 354 GLSPLFGMIVTGYISKLLGT--LIPSLLCQMPFRDSLTLSLMMSLRGQVELLLYIHWIDKLIIGVPPFTLLVLSTVVITG 431 (794)
Q Consensus 354 ~~~~~~~i~~~~~l~K~~~~--~l~~~~~~~~~~e~~~lgl~m~~kG~~~l~~~~~~~~~~ii~~~~~~~lv~~~ll~t~ 431 (794)
.+ ......+.+..=++.+ +... +++.++.+++.+|..+..-.. -+.+.+..|.|....+....++...++.=.
T Consensus 88 ~~--~~~~~~~~~~~~~~l~~~~~~~-~~g~~~~~al~lg~~l~~sS~--~i~~~iL~e~~~~~~~~g~~~l~~~i~~Di 162 (397)
T COG0475 88 SV--GLGVAQVGLTAPFLLGLLLLLG-ILGLSLIAALFLGAALALSST--AIVLKILMELGLLKTREGQLILGALVFDDI 162 (397)
T ss_pred hh--hhhHHHHHHHHHHHHHHHHHHH-HhccChHHHHHHHHHHHHHHH--HHHHHHHHHhccccchHHHHHHHHHHHHHH
Confidence 21 2222222222222222 2223 589999999999987655433 244455667777777776666666666555
Q ss_pred hHHHHHHh
Q 003798 432 IAGPLISF 439 (794)
Q Consensus 432 i~~plv~~ 439 (794)
..-|++..
T Consensus 163 ~~i~lLai 170 (397)
T COG0475 163 AAILLLAI 170 (397)
T ss_pred HHHHHHHH
Confidence 55555444
No 74
>PRK05274 2-keto-3-deoxygluconate permease; Provisional
Probab=95.90 E-value=0.5 Score=51.34 Aligned_cols=47 Identities=11% Similarity=0.159 Sum_probs=38.0
Q ss_pred HHHHHHHhhccChhHHHhcCchhhHHHHHHHHHHHHHHHHHHHHhhc
Q 003798 114 MYFMFIAGIKMDFTLLKRCGRKHVYIAVTGVIIPTATSAAVAFLTRK 160 (794)
Q Consensus 114 ~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~~~p~~l~~~~~~~l~~ 160 (794)
..++|..|-.+|++...+..||...+.+.-+.+..+++..+..+++.
T Consensus 54 ~~~~~~~ga~i~~~~~~~~l~~g~~l~~~k~~~~~~~~~~~~~~~g~ 100 (326)
T PRK05274 54 AVFLFCMGASINLRATGTVLKKGGTLLLTKFAVAALVGVIAGKFIGE 100 (326)
T ss_pred HHHHHHcCCEEeccccchhhhhchhHHHHHHHHHHHHHHHhhhcchH
Confidence 36889999999999988888888888888888777777777666554
No 75
>COG2855 Predicted membrane protein [Function unknown]
Probab=95.83 E-value=0.1 Score=55.88 Aligned_cols=116 Identities=14% Similarity=0.094 Sum_probs=87.2
Q ss_pred HHHHhchhhhHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccchhhHHHHHHHHHHH
Q 003798 289 LTDMFGMAIANGPLWLGLVIPDGPPLGATLVERTETLIMEIFMPFAFAVVGMYTDVYAMFEFGWSGLSPLFGMIVTGYIS 368 (794)
Q Consensus 289 ~ae~~G~~~~lgaflaGl~i~~~~~~~~~l~~kl~~~~~~~~~PlfF~~~G~~~dl~~l~~~~~~~~~~~~~i~~~~~l~ 368 (794)
..+..|.++..=|.++|+++...++...+...-++.. ...++.+=.++.|++++++++. ...+. .+.+....+..
T Consensus 31 ~~~~~~l~al~lAIllGi~l~~l~~~~~~~~~GI~fs-~k~LLr~gIvLlG~~ltl~~i~---~~G~~-~v~~~~~~l~~ 105 (334)
T COG2855 31 FSIHLGLSALTLAILLGILLGILPQIPAQTSAGITFS-SKKLLRLGIVLLGFRLTLSDIA---DVGGS-GVLIIAITLSS 105 (334)
T ss_pred HhhhcCchHHHHHHHHHHHHhccccchhhhccchhhh-HHHHHHHHHHHHcceeeHHHHH---HcCcc-HHHHHHHHHHH
Confidence 4455667788999999999987655555555555553 7778888889999999999987 33332 34555556666
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHhHHHHHHHHHHhhh
Q 003798 369 KLLGTLIPSLLCQMPFRDSLTLSLMMSLRGQVELLLYIHWI 409 (794)
Q Consensus 369 K~~~~~l~~~~~~~~~~e~~~lgl~m~~kG~~~l~~~~~~~ 409 (794)
-++.+++..+++|++++.+..+|..-+.-|.-+++...-..
T Consensus 106 t~~~~~~lg~~lgld~~~a~Lia~GssICGasAiaA~~pvi 146 (334)
T COG2855 106 TFLFAYFLGKLLGLDKKLALLIAAGSSICGASAIAATAPVI 146 (334)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHccchhhHHHHHHHhCCcC
Confidence 77778888889999999999999998888887776655443
No 76
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=95.75 E-value=0.5 Score=51.39 Aligned_cols=270 Identities=15% Similarity=0.084 Sum_probs=134.3
Q ss_pred hccChhHHHhcCchhhHHHHHHHHHHHHHHHHHHHHhhccCCcchhhHHHHHHHHHHH-----hhccHHHHHHHHH-hcC
Q 003798 122 IKMDFTLLKRCGRKHVYIAVTGVIIPTATSAAVAFLTRKSMDPELAKVSSIGAITTSL-----AVTSFPVLNPILK-DLN 195 (794)
Q Consensus 122 le~d~~~l~~~~~~~~~ia~~~~~~p~~l~~~~~~~l~~~~~~~~~~~~~~l~lg~~l-----s~Ts~~vv~~iL~-el~ 195 (794)
+.||.+.+.|...|-+..-+.+.+..++++.+++.+++.... ...+++..-. ..-+.|. +.+-+ -++
T Consensus 40 L~m~Rk~Lik~~~r~~p~il~g~~~a~~~g~lvG~l~G~~~~------~~~~~i~lPIm~GG~GaGavPL-S~~Y~~~~g 112 (347)
T TIGR00783 40 LGMNRKLLLKALMRFIPPALIGMVLAVIVGILVGTLFGLGFD------HSLMYIVMPIMAGGVGAGIVPL-SIIYSAITG 112 (347)
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHh------HhhheeeehhcCCCcccchhhH-HHHHHHHhC
Confidence 389999999998888888888888888888888888776432 1111111100 0111121 11111 123
Q ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCC-CCcccc
Q 003798 196 LLSSEMGRMAIVTAVIGDAIGINIVIAFEAAKQGEGDSVDAVWYLISLVILLAFICIAVRRT-MLWIVHKTPV-GKPVSQ 273 (794)
Q Consensus 196 l~~s~~g~l~ls~a~v~D~~~~ill~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~r~~-~~~i~~~~~~-~~~~~e 273 (794)
....+.-..++.+.++.++++++.-++.--+.... +..+.--.+ .|.- ........++ ..+.+-
T Consensus 113 ~~~~~~~s~~ip~~~igni~AIi~agll~~lG~~~-p~ltG~G~L-------------~~~~~~~~~~~~~~~~~~~~~~ 178 (347)
T TIGR00783 113 RSSEEIFSQLIPAVIIGNIFAIICAGLLSRIGKKR-PKLNGHGEL-------------VRSEKREDAEKAKEITEIKIDV 178 (347)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CCcCCCceE-------------eecCCcchhhhccccccCCCCH
Confidence 33333444445555555555555444332221100 000000000 0000 0000000000 001111
Q ss_pred hHHHHHHHHHHHHHHH---HHHh-chhhhHHHHHHHhhcCCCCCchhHHHHHHHHH---HHHHHHHHHHHHhccc-cccc
Q 003798 274 GYIVGILLGVLVMGFL---TDMF-GMAIANGPLWLGLVIPDGPPLGATLVERTETL---IMEIFMPFAFAVVGMY-TDVY 345 (794)
Q Consensus 274 ~~~~~il~~~l~~~~~---ae~~-G~~~~lgaflaGl~i~~~~~~~~~l~~kl~~~---~~~~~~PlfF~~~G~~-~dl~ 345 (794)
..+..-+.++..++.+ .+.+ ++|+..-+.++|.++....=..++++++...+ ...-+.+..++-+|+. +|+.
T Consensus 179 ~~~g~Gl~~a~~~y~~g~l~~~~~~Ih~~v~mII~~vi~k~~gllp~~i~~~a~~~~~F~~~~lt~~ll~giGla~t~l~ 258 (347)
T TIGR00783 179 KLMGSGVLFAVALFMAGGLLKSFPGIPAYAFMILIAAALKAFGLVPKEIEEGAKMLSQFISKNLTWPLMVGVGVSYIDLD 258 (347)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCHH
Confidence 1122222222222222 2222 57888888888888776444445555554443 3333344444455765 7887
Q ss_pred ccccccccchhhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHHHHHhH-HHHHHHHHHhhhhccccC
Q 003798 346 AMFEFGWSGLSPLFGMIVTGYISKLLGTLIPSLLCQMPFRDS-LTLSLMMSLR-GQVELLLYIHWIDKLIIG 415 (794)
Q Consensus 346 ~l~~~~~~~~~~~~~i~~~~~l~K~~~~~l~~~~~~~~~~e~-~~lgl~m~~k-G~~~l~~~~~~~~~~ii~ 415 (794)
.+.+ .-++ ..+++++...++=.+++++.+|+.|+-+-|+ +.-|+.|+.+ |.-+++++..+...+++.
T Consensus 259 ~L~~--a~t~-~~vviiv~~Vlg~ii~s~lvGKllG~YPiE~aItagLC~~~~GGtGDvavLsAa~RM~Lmp 327 (347)
T TIGR00783 259 DLVA--ALSW-QFVVICLSVVVAMILGGAFLGKLMGMYPVESAITAGLCNSGMGGTGDVAVLSASNRMNLIP 327 (347)
T ss_pred HHHH--Hhch-hHhhhHHHHHHHHHHHHHHHHHHhCCChHHHHHHHhhhccCCCCCCceeeeehhhhccccc
Confidence 7651 1223 3566666777888899999999999765555 5556677776 455666666666555543
No 77
>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms]
Probab=95.71 E-value=0.17 Score=47.97 Aligned_cols=131 Identities=21% Similarity=0.230 Sum_probs=80.7
Q ss_pred ceEEEEEec-CCccHHHHHHHHHHHhcCCCeEEEEEEeeccCCCCC-------c-------hhhhhhHHHHHHHHHhhcC
Q 003798 633 RHHFVVLFL-GGADAREALAYADRMVGNLDVSLTVIRFLSFNHEGD-------D-------EMEKKLDDGLVTWFWVKNE 697 (794)
Q Consensus 633 ~~~I~v~f~-GG~dDreAL~~A~rma~~~~v~ltvl~~~~~~~~~~-------~-------~~~~~~d~~~l~~~~~~~~ 697 (794)
..+|++.+. |.+..+.|++.|..++...+..++++++.+...... . ....+..++.+++.+....
T Consensus 5 ~~~il~~~d~~s~~~~~a~~~a~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (154)
T COG0589 5 YKKILVAVDVGSEAAEKALEEAVALAKRLGAPLILLVVIDPLEPTALVSVALADAPIPLSEEELEEEAEELLAEAKALAE 84 (154)
T ss_pred cceEEEEeCCCCHHHHHHHHHHHHHHHhcCCeEEEEEEecccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 468999999 999999999999999999998888888875422110 0 1112333455555544432
Q ss_pred CCCceEEEEEEecChH---HHHHHHHhhhccCcccEEEEecccCCCCccccccCCCCCCCccchhhhhhhccCCCCceeE
Q 003798 698 SNERVRYREVVVRNGA---ETVASIQAVNDEAYCDLWIVGRYQGINGKLLEGLEAWSEDNELGVIGDYVASIDFGSTASV 774 (794)
Q Consensus 698 ~~~~v~y~e~~v~~~~---~~~~~i~~~~~~~~~DL~iVGr~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~~~Sv 774 (794)
... +...+..+..|. +.+....+.. + .||+++|.++. +.|.+ =-||-.-+-++.. ++++|
T Consensus 85 ~~~-~~~~~~~~~~g~~~~~~i~~~a~~~-~--adliV~G~~g~---------~~l~~-~llGsvs~~v~~~---~~~pV 147 (154)
T COG0589 85 AAG-VPVVETEVVEGSPSAEEILELAEEE-D--ADLIVVGSRGR---------SGLSR-LLLGSVAEKVLRH---APCPV 147 (154)
T ss_pred HcC-CCeeEEEEecCCCcHHHHHHHHHHh-C--CCEEEECCCCC---------ccccc-eeeehhHHHHHhc---CCCCE
Confidence 222 111122222232 3333222222 4 89999999732 22333 4578888888877 88899
Q ss_pred EEEEee
Q 003798 775 LVMQQQ 780 (794)
Q Consensus 775 Lvvqq~ 780 (794)
||++..
T Consensus 148 lvv~~~ 153 (154)
T COG0589 148 LVVRSE 153 (154)
T ss_pred EEEccC
Confidence 999753
No 78
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=95.55 E-value=0.057 Score=59.40 Aligned_cols=110 Identities=8% Similarity=0.033 Sum_probs=70.9
Q ss_pred CceeEEEeccCCchHHHHHHHHhhCCCCCCCceEEEEEEeeecCCCccccccccccCCCCCCCcchHHHHHHHHhhhh--
Q 003798 463 ELRLVVCVHEEESVAGLINLLEVSCPTVDSPFSIYSLHLIELIGRGIPLLVDYENEEHSPEYTNDDAIHNALKLYSET-- 540 (794)
Q Consensus 463 elriLv~v~~~~~~~~li~l~~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~-- 540 (794)
-.|||++++..++....++-+..++...+...+++++|+++... .....+ ......+++++..++..+.
T Consensus 5 ykkILVavDGSe~S~~Al~~AielA~~~g~~AeL~lL~Vv~~~~----~~~~~~-----~~~~~~eelle~~~~~~~~~l 75 (357)
T PRK12652 5 ANRLLVPVADSVTVRQTVAYAVESAEEAAETPTVHLVAAASGRA----VDPEGQ-----DELAAAEELLERVEVWATEDL 75 (357)
T ss_pred cCeEEEEeCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEEecCcc----cccchh-----HHHHHHHHHHHHHHHHHHHhh
Confidence 35899999999999998888877764421246999999987321 110000 0112234444444443322
Q ss_pred ---cCceEEEEeEEec-----cCCChhHHHHHHHHhcCCcEEEecCCCC
Q 003798 541 ---RGELKFNAFTALA-----PMRSMYQNICELALDNKATLIILPFHKE 581 (794)
Q Consensus 541 ---~~~v~v~~~~~vs-----~~~~m~~dI~~~A~~~~a~lIilp~h~~ 581 (794)
..+++++...... ...+.++.|++.|++.++|+|+|+-..+
T Consensus 76 ~~~~~gV~ve~~vv~~~~~~~~~G~pae~Iv~~Aee~~aDLIVm~~~~~ 124 (357)
T PRK12652 76 GDDASSVTIETALLGTDEYLFGPGDYAEVLIAYAEEHGIDRVVLDPEYN 124 (357)
T ss_pred hcccCCCceEEEEEeccccccCCCCHHHHHHHHHHHcCCCEEEECCCCC
Confidence 1367777655442 1258899999999999999999996544
No 79
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=95.40 E-value=2.8 Score=44.98 Aligned_cols=53 Identities=23% Similarity=0.351 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHhhccChhHHHhcCch--hhHHHHH-HH-HHHHHHHHHHHHHhh
Q 003798 106 RSVGIMAFMYFMFIAGIKMDFTLLKRCGRK--HVYIAVT-GV-IIPTATSAAVAFLTR 159 (794)
Q Consensus 106 ~~l~~lgl~~llF~~Gle~d~~~l~~~~~~--~~~ia~~-~~-~~p~~l~~~~~~~l~ 159 (794)
..+.-..+.+.||..|+.++.+++++..|+ ....++. .+ +.|.+ +++++.+++
T Consensus 7 ~~~~~~~l~~~m~~~G~~l~~~~~~~~~~~p~~~~~~~~~~~vi~Pll-a~~l~~~~~ 63 (286)
T TIGR00841 7 STILLILLFLIMFSMGCTLEFEDFKGHLRKPWGVIIGLLAQYGIMPLT-GFLLAKVFK 63 (286)
T ss_pred HHHHHHHHHHHHHHccCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHH-HHHHHHHhC
Confidence 333344488899999999999999886653 3333333 33 44543 455555553
No 80
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=95.30 E-value=0.16 Score=50.80 Aligned_cols=130 Identities=15% Similarity=0.326 Sum_probs=87.5
Q ss_pred HHHHHHHHhhCccccCCchhhhhccCCCCcHHHHHHHHHHHHHHHHHHHhhccCh-----hHHHhcCchhhHHHHHHHHH
Q 003798 72 ISEMIGGIIVGPSILGRNKKFAEAMLPDNSQLVVRSVGIMAFMYFMFIAGIKMDF-----TLLKRCGRKHVYIAVTGVII 146 (794)
Q Consensus 72 i~~IlaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~d~-----~~l~~~~~~~~~ia~~~~~~ 146 (794)
++.+++|+++|-..... ....+...+..+..++|.+|+++-- +.+++.+++++.+.+...+-
T Consensus 2 l~~li~Gi~lG~~~~~~-------------~~~~~~~~~~~L~lLLF~VGi~lG~~~~~l~~l~~~g~~~Llipl~tIlG 68 (191)
T PF03956_consen 2 LIALILGILLGYFLRPP-------------FSLIDKISTYALYLLLFLVGIDLGSNREILRQLRSLGKRALLIPLATILG 68 (191)
T ss_pred eeeHHHHHHHHHHhccc-------------ccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 34567888888643221 1222668888999999999998843 45677889999999999999
Q ss_pred HHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHhhccHHHHHHHHHhcCccCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003798 147 PTATSAAVAFLTRKSMDPELAKVSSIGAITTSLAVTSFPVLNPILKDLNLLSSEMGRMAIVTAVIGDAIGINIVIAFEA 225 (794)
Q Consensus 147 p~~l~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~l~~s~~g~l~ls~a~v~D~~~~ill~v~~~ 225 (794)
+++.+..++.++.... .+++.++.-+.= +.....+++|+ .+.+.|.++.=+=++-+++++++.-++.-
T Consensus 69 Sllgg~l~~~ll~~~~-------~~~lav~sG~Gw--YSlsg~~i~~~--~~~~~G~iafl~n~~RE~~a~~~~P~~~r 136 (191)
T PF03956_consen 69 SLLGGLLASLLLGLSL-------KESLAVASGFGW--YSLSGVLITQL--YGPELGTIAFLSNLFREILAIILIPLLAR 136 (191)
T ss_pred HHHHHHHHHHHhcCCH-------HHHHHHHccCcH--HHhHHHHHHhh--hCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9988888888884332 344444433321 22223334443 35688998888888888888776655543
No 81
>PRK03818 putative transporter; Validated
Probab=95.18 E-value=0.62 Score=54.67 Aligned_cols=126 Identities=20% Similarity=0.250 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHHHh-hcccCCChhHHHHHHHHhhCccc--cCCchhhhhccCCCCcHHHHHHHHHHHHHHHHHHHhhc
Q 003798 47 FEIVFIICTTSIIRFL-LKPLKQPRVISEMIGGIIVGPSI--LGRNKKFAEAMLPDNSQLVVRSVGIMAFMYFMFIAGIK 123 (794)
Q Consensus 47 ~~i~lil~~~~l~~~l-l~rl~~P~ii~~IlaGiilGP~~--lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle 123 (794)
+-+++.+.++.+++.+ ++.+++- +.|-+++|+++|-.. +|. -.| ......+.++|+.+|+|.+|++
T Consensus 9 ~~l~l~i~lG~~lG~i~i~g~~LG-~~g~L~~gl~~G~~~~~~~~-------~~~---~~~~~~~~~~gl~lFv~~vGl~ 77 (552)
T PRK03818 9 SILALVAVVGLWIGNIKIRGVGLG-IGGVLFGGIIVGHFVSQFGL-------TLD---SDMLHFIQEFGLILFVYTIGIQ 77 (552)
T ss_pred HHHHHHHHHHHhhcceEECCCccc-cHHHHHHHHHHhccccccCc-------ccC---hHHHHHHHHHHHHHHHHHHhhc
Confidence 3334444444444442 2233344 478889999998521 111 012 4567779999999999999999
Q ss_pred cChhHH---HhcCchhhHHHHHHHHHHHHHHHHHHHHhhccCCcchhhHHHHHHHH-HHHhhccHHHHHHHHH
Q 003798 124 MDFTLL---KRCGRKHVYIAVTGVIIPTATSAAVAFLTRKSMDPELAKVSSIGAIT-TSLAVTSFPVLNPILK 192 (794)
Q Consensus 124 ~d~~~l---~~~~~~~~~ia~~~~~~p~~l~~~~~~~l~~~~~~~~~~~~~~l~lg-~~ls~Ts~~vv~~iL~ 192 (794)
.-++.+ |+.+.+...+++.-.+++.++++.+.++++... ....| .+-+.|+.|.+.....
T Consensus 78 ~Gp~f~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~G~~aGa~T~tp~l~aa~~ 141 (552)
T PRK03818 78 VGPGFFSSLRKSGLRLNLFAVLIVILGGLVTAILHKLFGIPL---------PVMLGIFSGAVTNTPALGAGQQ 141 (552)
T ss_pred ccHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCH---------HHHHHHhhccccccHHHHHHHH
Confidence 987765 455666777777777777877777765554321 22333 3446677777766544
No 82
>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters. Member proteins may have 0, 1, or 2 copies of the TrkA-C potassium uptake domain (IPR006037 from INTERPRO) between the duplications. The duplication appears distantly related to both the N- and the C-terminal domains the sodium/hydrogen exchanger family domain (IPR006153 from INTERPRO). The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=95.11 E-value=0.72 Score=45.24 Aligned_cols=113 Identities=20% Similarity=0.214 Sum_probs=77.2
Q ss_pred cccCCChhHHHHHHHHhhCccccCCc-hhhhhccCCCCcHHHHHHHHHHHHHHHHHHHhhccChhHH---HhcCchhhHH
Q 003798 64 KPLKQPRVISEMIGGIIVGPSILGRN-KKFAEAMLPDNSQLVVRSVGIMAFMYFMFIAGIKMDFTLL---KRCGRKHVYI 139 (794)
Q Consensus 64 ~rl~~P~ii~~IlaGiilGP~~lg~~-~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l---~~~~~~~~~i 139 (794)
+++++-...+-+++|+++|-. +.. |.+ .| ....+.+.++|+.+|++.+|++--++-+ ++.+.+...+
T Consensus 19 ~~~~LG~a~G~L~vgL~~G~~--~~~~~~~----~~---~~~~~~l~~~GL~lFl~~VGl~aG~~F~~~l~~~G~~~~~~ 89 (169)
T PF06826_consen 19 GGFSLGAAGGVLFVGLILGAL--GRTGPIF----LP---ISAPSFLRQLGLALFLAAVGLSAGPGFFSSLKRGGLKLLLL 89 (169)
T ss_pred cceeccccHHHHHHHHHHHHh--hhccCCC----CC---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 556667777889999999863 221 111 12 4566789999999999999998876544 5667777888
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCcchhhHHHHHHHH-HHHhhccHHHHHHHHHh
Q 003798 140 AVTGVIIPTATSAAVAFLTRKSMDPELAKVSSIGAIT-TSLAVTSFPVLNPILKD 193 (794)
Q Consensus 140 a~~~~~~p~~l~~~~~~~l~~~~~~~~~~~~~~l~lg-~~ls~Ts~~vv~~iL~e 193 (794)
++.-..+|.+++..+++++.+.. . ....| .+-+.|++|.+....+.
T Consensus 90 ~~~i~~~~~~~~~~~~~~~~~l~-------~-~~~~G~~aGa~T~tp~L~~A~~~ 136 (169)
T PF06826_consen 90 GVIITLVPLLIALVIGRYLFKLN-------P-GIAAGILAGALTSTPALAAAQEA 136 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCC-------H-HHHHHHHHccccCcHHHHHHHHh
Confidence 88888888888888887443322 1 22333 34466777877766444
No 83
>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes. They are related to the human bile acid:sodium symporters, which are transmembrane proteins functioning in the liver in the uptake of bile acids from portal blood plasma, a process mediated by the co-transport of Na+ []. In yeast, overexpression of the ACR3 gene confers an arsenite- but not an arsenate-resistance phenotype [].; GO: 0008508 bile acid:sodium symporter activity, 0006814 sodium ion transport, 0016020 membrane; PDB: 3ZUX_A 3ZUY_A.
Probab=95.08 E-value=1.4 Score=44.00 Aligned_cols=107 Identities=13% Similarity=0.172 Sum_probs=53.2
Q ss_pred HHHHHHHHHHhhccChhHHHhcCchhhHHH---HHHHHHHHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHhhcc-HHH
Q 003798 111 MAFMYFMFIAGIKMDFTLLKRCGRKHVYIA---VTGVIIPTATSAAVAFLTRKSMDPELAKVSSIGAITTSLAVTS-FPV 186 (794)
Q Consensus 111 lgl~~llF~~Gle~d~~~l~~~~~~~~~ia---~~~~~~p~~l~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts-~~v 186 (794)
+.+.+.||..|+++|++++++..|+...+. +..+++.=++++++++.+.... .....|..+...+ -+.
T Consensus 2 i~l~~~mf~~gl~~~~~~l~~~~~~p~~l~~~l~~~~~i~Plla~~l~~~~~~~~--------~~~~~Gl~l~~~~P~~~ 73 (187)
T PF01758_consen 2 ILLFLMMFSMGLSLTFEDLRRVLRRPKLLLIGLLAQFLIMPLLAFGLAWLLLPLS--------PALALGLLLVAACPGGP 73 (187)
T ss_dssp -HHHHHHHHHHHC--GGGGHHHHHSHHHHHHHHHHHHHHHHHHHHHHH-HHTT----------HHHHHHHHHHHHS-B-T
T ss_pred hhhhHHHHHhhhcccHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--------HHHHHHHHHHhcCCcHH
Confidence 457789999999999999997766544322 2334444445555553332221 1223332222111 122
Q ss_pred HHHHHHhcCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 003798 187 LNPILKDLNLLSSEMGRMAIVTAVIGDAIGINIVIAFEAAKQ 228 (794)
Q Consensus 187 v~~iL~el~l~~s~~g~l~ls~a~v~D~~~~ill~v~~~~~~ 228 (794)
.+...+.+. +.+. .++.+...++.+.+.++.-+...+..
T Consensus 74 ~s~~~t~l~--~Gd~-~ls~~lt~istll~~~~~P~~~~l~~ 112 (187)
T PF01758_consen 74 ASNVFTYLA--GGDV-ALSVSLTLISTLLAPFLMPLLLYLLS 112 (187)
T ss_dssp HHHHHHHHT--T--H-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh--CCCc-ccccceeeHHHHHHHHHHHHHHHHHh
Confidence 333334332 3333 36666677787877777665555443
No 84
>PRK05326 potassium/proton antiporter; Reviewed
Probab=95.06 E-value=0.3 Score=57.65 Aligned_cols=118 Identities=13% Similarity=0.085 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCCCCCc--hhHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccch
Q 003798 278 GILLGVLVMGFLTDMFGMAIANGPLWLGLVIPDGPPL--GATLVERTETLIMEIFMPFAFAVVGMYTDVYAMFEFGWSGL 355 (794)
Q Consensus 278 ~il~~~l~~~~~ae~~G~~~~lgaflaGl~i~~~~~~--~~~l~~kl~~~~~~~~~PlfF~~~G~~~dl~~l~~~~~~~~ 355 (794)
+++++..++..+++.+|++.+++-.++|+++.....- ...-.+-.+. ...+.+++.....|+++|+..+. ..+
T Consensus 13 ~ll~l~~~~~~l~~r~~~P~ll~~il~GillGp~~lg~i~~~~~~~~~~-i~~l~L~~iLF~~Gl~~~~~~l~----~~~ 87 (562)
T PRK05326 13 LLLLLSILASRLSSRLGIPSLLLFLAIGMLAGEDGLGGIQFDNYPLAYL-VGNLALAVILFDGGLRTRWSSFR----PAL 87 (562)
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhCccccCCcccCcHHHHHH-HHHHHHHHHHHcCccCCCHHHHH----HHH
Confidence 3444555566777888999999999999988653110 0011122333 47888898888999999998886 233
Q ss_pred hhHHHHHHHHHHHHHHH-HHHHHHhcCCChHHHHHHHHHHHhHHHH
Q 003798 356 SPLFGMIVTGYISKLLG-TLIPSLLCQMPFRDSLTLSLMMSLRGQV 400 (794)
Q Consensus 356 ~~~~~i~~~~~l~K~~~-~~l~~~~~~~~~~e~~~lgl~m~~kG~~ 400 (794)
..+..+....++.-.+. ++.+.++++++|.+++.+|..+++-...
T Consensus 88 ~~~~~la~~gv~~t~~~~g~~~~~l~g~~~~~alllgai~s~Td~a 133 (562)
T PRK05326 88 GPALSLATLGVLITAGLTGLFAHWLLGLDWLEGLLLGAIVGSTDAA 133 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhhccCchH
Confidence 33333333333333333 4455567799999999999887766543
No 85
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=94.86 E-value=3.5 Score=44.91 Aligned_cols=128 Identities=16% Similarity=0.048 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHHHHHhchh--hhHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHhccccccccccccccc
Q 003798 276 IVGILLGVLVMGFLTDMFGMA--IANGPLWLGLVIPDGPPLGATLVERTETLIMEIFMPFAFAVVGMYTDVYAMFEFGWS 353 (794)
Q Consensus 276 ~~~il~~~l~~~~~ae~~G~~--~~lgaflaGl~i~~~~~~~~~l~~kl~~~~~~~~~PlfF~~~G~~~dl~~l~~~~~~ 353 (794)
+...+....+.+++.+.+++. .++|+++.+.++.......-.+-+.+. .+..-+.=..+|.+++...+.+ -..
T Consensus 157 l~~l~~~~~~g~~l~~~l~iPa~~llGpml~~a~~~~~~~~~~~~P~~l~----~~aqv~iG~~iG~~f~~~~l~~-~~~ 231 (318)
T PF05145_consen 157 LALLALAALAGGLLARRLRIPAPWLLGPMLVSAILNLFGGPSFSLPPWLV----NAAQVLIGASIGSRFTRETLRE-LRR 231 (318)
T ss_pred HHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhCCCCCCCHHHH----HHHHHHHHHHHHccccHHHHHH-HHH
Confidence 344455566677778887764 688888887776542111111122222 2222334467789998766641 123
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhHHHHHHHHHHhhhhc
Q 003798 354 GLSPLFGMIVTGYISKLLGTLIPSLLCQMPFRDSLTLSLMMSLRGQVELLLYIHWIDK 411 (794)
Q Consensus 354 ~~~~~~~i~~~~~l~K~~~~~l~~~~~~~~~~e~~~lgl~m~~kG~~~l~~~~~~~~~ 411 (794)
.+...+...+..+..-.+.+++.+++.++++.+++. .+.|-|.-|+.+.....+.
T Consensus 232 ~~~~~l~~~~~~l~~~~~~a~~l~~~~~~~~~t~~L---a~aPGGl~eM~l~A~~l~~ 286 (318)
T PF05145_consen 232 LLPPALLSTLLLLALCALFAWLLSRLTGIDFLTALL---ATAPGGLAEMALIALALGA 286 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH---HhCCccHHHHHHHHHHcCC
Confidence 344455556666666778888889999999877643 3679999988876665543
No 86
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=94.75 E-value=0.82 Score=49.90 Aligned_cols=127 Identities=12% Similarity=0.035 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHHH-----hchhhhHHHHHHHhhcCCCC--CchhHHHHHHHHHHHHHHHHHHHHHhccccccccccccc
Q 003798 279 ILLGVLVMGFLTDM-----FGMAIANGPLWLGLVIPDGP--PLGATLVERTETLIMEIFMPFAFAVVGMYTDVYAMFEFG 351 (794)
Q Consensus 279 il~~~l~~~~~ae~-----~G~~~~lgaflaGl~i~~~~--~~~~~l~~kl~~~~~~~~~PlfF~~~G~~~dl~~l~~~~ 351 (794)
.+.+.+.+.++++. .++++.+=|.+.|+++.|.. +..+....-++ +....++-+=.+..|.++++.++.
T Consensus 10 ~~~ia~~a~~l~~~~~~~~~~l~~~~~AillG~~l~n~~~~~~~~~~~~Gi~-f~~k~lLr~gIVLlG~~l~~~~i~--- 85 (335)
T TIGR00698 10 MALILLLAGAAGSIINLADPALSALFLAILLGMVAGNTIYPQRDEEKKRGVL-FAKPFLLRIGITLYGFRLTFPYIA--- 85 (335)
T ss_pred HHHHHHHHHHHHhhhhhccCCCcHHHHHHHHHHHHhccccccchhhccchHH-HHHHHHHHHHHHHHCccccHHHHH---
Confidence 33444444455443 47788888999999998831 22223232233 345677777788899999999886
Q ss_pred ccchhhHHHHHHHHHHHHHH-HHHHHHHhcCCChHHHHHHHHHHHhHHHHHHHHHHhhhh
Q 003798 352 WSGLSPLFGMIVTGYISKLL-GTLIPSLLCQMPFRDSLTLSLMMSLRGQVELLLYIHWID 410 (794)
Q Consensus 352 ~~~~~~~~~i~~~~~l~K~~-~~~l~~~~~~~~~~e~~~lgl~m~~kG~~~l~~~~~~~~ 410 (794)
...+. .+.+.+.....-+. +.++..|.+|++++.+..++...+.-|.-+++...-..+
T Consensus 86 ~~G~~-~l~~~~~~v~~~~~~~~~~g~k~l~l~~~~~~Lia~GtsICGaSAi~A~a~~i~ 144 (335)
T TIGR00698 86 DVGPN-EIVADTLILTSTFFLTVFLGSSRLKLDKQMSILLGAGSSICGAAAVAAIEPVIK 144 (335)
T ss_pred HhhHH-HHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHcchhHHHHHHHHHhccccC
Confidence 33333 22333333333344 445555899999999999999988888888776654443
No 87
>COG2855 Predicted membrane protein [Function unknown]
Probab=94.71 E-value=7.6 Score=41.98 Aligned_cols=101 Identities=11% Similarity=0.093 Sum_probs=70.3
Q ss_pred hcccCCChhHHHHHHHHhhCccccCCch-hhhhccCCCCcHHHHHHHHHHHHHHHHHHHhhccChhHHHhcCchhhHHHH
Q 003798 63 LKPLKQPRVISEMIGGIIVGPSILGRNK-KFAEAMLPDNSQLVVRSVGIMAFMYFMFIAGIKMDFTLLKRCGRKHVYIAV 141 (794)
Q Consensus 63 l~rl~~P~ii~~IlaGiilGP~~lg~~~-~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~~~~~ia~ 141 (794)
....++|..+--|+.|+++|. +...+ ... + .-.-.-+.+-++|.++ .|.++++.++...+.+.+.+-.
T Consensus 32 ~~~~~l~al~lAIllGi~l~~--l~~~~~~~~----~-GI~fs~k~LLr~gIvL----lG~~ltl~~i~~~G~~~v~~~~ 100 (334)
T COG2855 32 SIHLGLSALTLAILLGILLGI--LPQIPAQTS----A-GITFSSKKLLRLGIVL----LGFRLTLSDIADVGGSGVLIIA 100 (334)
T ss_pred hhhcCchHHHHHHHHHHHHhc--cccchhhhc----c-chhhhHHHHHHHHHHH----HcceeeHHHHHHcCccHHHHHH
Confidence 344678999999999999993 22222 110 0 1122345566777775 6999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHhh
Q 003798 142 TGVIIPTATSAAVAFLTRKSMDPELAKVSSIGAITTSLAV 181 (794)
Q Consensus 142 ~~~~~p~~l~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~ 181 (794)
..+..++++++.++.+++.+. ..++++|+--|.
T Consensus 101 ~~l~~t~~~~~~lg~~lgld~-------~~a~Lia~GssI 133 (334)
T COG2855 101 ITLSSTFLFAYFLGKLLGLDK-------KLALLIAAGSSI 133 (334)
T ss_pred HHHHHHHHHHHHHHHHhCCCH-------HHHHHHHccchh
Confidence 888888888888888665432 455555554444
No 88
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=94.25 E-value=1.2 Score=55.12 Aligned_cols=109 Identities=6% Similarity=0.060 Sum_probs=57.7
Q ss_pred CccceEEEEEecCCccHHHHHHHHHHHh--cCCCeEEEEEEeeccCCC-----------C-Cc---hhhhhhHHHHHHHH
Q 003798 630 SMRRHHFVVLFLGGADAREALAYADRMV--GNLDVSLTVIRFLSFNHE-----------G-DD---EMEKKLDDGLVTWF 692 (794)
Q Consensus 630 ~~~~~~I~v~f~GG~dDreAL~~A~rma--~~~~v~ltvl~~~~~~~~-----------~-~~---~~~~~~d~~~l~~~ 692 (794)
+++..||++.+-+-.|-+-.+.++.... +.+...+.++|+++-... . ++ +++....|..++.|
T Consensus 455 ~~~elriL~cv~~~~~v~~li~Lle~s~~t~~sp~~vy~lhLveL~~r~~~~l~~h~~~~~~~~~~~~~~~~~~~i~~af 534 (832)
T PLN03159 455 HDAELRMLVCVHTPRNVPTIINLLEASHPTKRSPICIYVLHLVELTGRASAMLIVHNTRKSGRPALNRTQAQSDHIINAF 534 (832)
T ss_pred CCCceeEEEEeccCCcHHHHHHHHHhcCCCCCCCceEEEEEEEeecCCCccceeeeecccccccccccccccccHHHHHH
Confidence 4456799988887777777788776653 334589999999863210 0 00 00111123344444
Q ss_pred HhhcCCCCceEEEE-EEecChHHHHHHHHhhhccCcccEEEEecccC
Q 003798 693 WVKNESNERVRYRE-VVVRNGAETVASIQAVNDEAYCDLWIVGRYQG 738 (794)
Q Consensus 693 ~~~~~~~~~v~y~e-~~v~~~~~~~~~i~~~~~~~~~DL~iVGr~~~ 738 (794)
+.-...+.+|.-+- ..++....+-+.|...+.+.+.||+|++-|..
T Consensus 535 ~~~~~~~~~v~v~~~t~vs~~~~mh~dIc~~A~d~~~slIilpfhk~ 581 (832)
T PLN03159 535 ENYEQHAGCVSVQPLTAISPYSTMHEDVCNLAEDKRVSLIIIPFHKQ 581 (832)
T ss_pred HHHHhhcCceEEEEEEEEeCcccHHHHHHHHHHhcCCCEEEECCCCc
Confidence 32111112343322 23334334444454444443379999999853
No 89
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=93.65 E-value=0.54 Score=55.29 Aligned_cols=93 Identities=15% Similarity=0.200 Sum_probs=59.0
Q ss_pred HHHHHHHHHHh-hcccCCChhHHHHHHHHhhCccccCCchhhhhccCCCCcHHHHHHHHHHHHHHHHHHHhhccChhHHH
Q 003798 52 IICTTSIIRFL-LKPLKQPRVISEMIGGIIVGPSILGRNKKFAEAMLPDNSQLVVRSVGIMAFMYFMFIAGIKMDFTLLK 130 (794)
Q Consensus 52 il~~~~l~~~l-l~rl~~P~ii~~IlaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~ 130 (794)
++.++++++.+ .+.+++-.+.+-+++|+++|-.... + | +.+.++|+++|+|.+|++.-+.-++
T Consensus 18 ~i~lG~~lG~iki~~~~LG~~~gvLfvgl~~G~~g~~-i--------~-------~~v~~~gl~lFvy~vG~~~Gp~Ff~ 81 (562)
T TIGR03802 18 SLALGYLIGKIKFGSFQLGGVAGSLIVAVLIGQLGIQ-I--------D-------PGVKAVFFALFIFAIGYEVGPQFFA 81 (562)
T ss_pred HHHHhHhhcceEEeeeecchHHHHHHHHHHHHhcCCC-C--------C-------hHHHHHHHHHHHHHhhhccCHHHHH
Confidence 33334444333 3445667788999999999964322 1 2 1267799999999999999988775
Q ss_pred hc---CchhhHHHHHHHHHHHHHHHHHHHHhhc
Q 003798 131 RC---GRKHVYIAVTGVIIPTATSAAVAFLTRK 160 (794)
Q Consensus 131 ~~---~~~~~~ia~~~~~~p~~l~~~~~~~l~~ 160 (794)
.- +.+-..+++..+++.++++.+++++++.
T Consensus 82 ~l~~~g~~~~~~a~~~~~~~~~~~~~~~~~~g~ 114 (562)
T TIGR03802 82 SLKKDGLREIILALVFAVSGLITVYALAKIFGL 114 (562)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 44 4444455555555555555555555543
No 90
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=93.26 E-value=1.2 Score=53.63 Aligned_cols=71 Identities=15% Similarity=0.108 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHhcccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHh--cCCChHHHHHHHHHHHhHHHH
Q 003798 326 IMEIFMPFAFAVVGMYTDVYAMFEFGWSGLSPLFGMIVTGYISKLLGTLIPSLL--CQMPFRDSLTLSLMMSLRGQV 400 (794)
Q Consensus 326 ~~~~~~PlfF~~~G~~~dl~~l~~~~~~~~~~~~~i~~~~~l~K~~~~~l~~~~--~~~~~~e~~~lgl~m~~kG~~ 400 (794)
++.+.+++-....|++++...+. ..|..+..+++.+...-++.+.+.+++ .+++|..++.+|.++++-.-+
T Consensus 74 IteIvL~I~LFa~Gl~L~~~~Lr----r~wrsV~rLl~~~M~lT~livAL~a~~Li~GL~~~~ALLLGAILAPTDPV 146 (810)
T TIGR00844 74 ISRILLCLQVFAVSVELPRKYML----KHWVSVTMLLVPVMTSGWLVIALFVWILVPGLNFPASLLMGACITATDPV 146 (810)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHH----HhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhcCCcHH
Confidence 46677788888889999998876 345444444444444445555555553 499999999999999987754
No 91
>TIGR01625 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplication domain. This model represents a domain that is duplicated the aspartate-alanine antiporter AspT, as well as HI0035 of Haemophilus influenzae, YidE and YbjL of E. coli, and a number of other known or putative transporters. Member proteins may have 0, 1, or 2 copies of TrkA potassium uptake domain pfam02080 between the duplications. The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=93.23 E-value=0.45 Score=45.92 Aligned_cols=111 Identities=14% Similarity=0.120 Sum_probs=66.1
Q ss_pred ChhHHHHHHHHhhCccccCCc-hhhhhccCCCCcHHHHHHHHHHHHHHHHHHHhhccChhHHH---hcC-chhhHHHHHH
Q 003798 69 PRVISEMIGGIIVGPSILGRN-KKFAEAMLPDNSQLVVRSVGIMAFMYFMFIAGIKMDFTLLK---RCG-RKHVYIAVTG 143 (794)
Q Consensus 69 P~ii~~IlaGiilGP~~lg~~-~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~---~~~-~~~~~ia~~~ 143 (794)
-..-+-+++|+++|-. +.. |.+. -.| ......+.++|+.+|++.+|++--.+.+. +.+ .....++..-
T Consensus 22 G~~~G~L~vgL~~G~~--~~~~p~~~--~~p---~~~~~~l~~~GL~lFl~~vGl~aG~~f~~~l~~~gg~~~~~~g~~v 94 (154)
T TIGR01625 22 GNAGGVLFVGLLLGHF--GATGPLTW--YIP---FSANLFIREFGLMLFLYGVGLSAGPGFFSSLKDGGGLLRINGGALI 94 (154)
T ss_pred cccHHHHHHHHHHHhc--cccCCcce--ecC---hhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHH
Confidence 3367889999999863 332 1111 012 34677789999999999999998876654 323 1233344444
Q ss_pred HHHHHHHHHHHHHHhhccCCcchhhHHHHHHHH-HHHhhccHHHHHHHHHhc
Q 003798 144 VIIPTATSAAVAFLTRKSMDPELAKVSSIGAIT-TSLAVTSFPVLNPILKDL 194 (794)
Q Consensus 144 ~~~p~~l~~~~~~~l~~~~~~~~~~~~~~l~lg-~~ls~Ts~~vv~~iL~el 194 (794)
.++|.+++..+...+.+.. . ....| .+-+.|++|.+....+..
T Consensus 95 ~~~~~~~~~~~~~~~~~~~-------~-~~~~G~~aGa~T~tpaL~aa~~~~ 138 (154)
T TIGR01625 95 TVVPTLLVAVALIKLLRIN-------Y-ALTAGMLAGATTNTPALDAANDTL 138 (154)
T ss_pred HHHHHHHHHHHHHHHhCCC-------H-HHHHHHHhccccChHHHHHHHHHh
Confidence 5555555555554433321 1 23333 445778888887665543
No 92
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=92.74 E-value=0.97 Score=53.22 Aligned_cols=114 Identities=18% Similarity=0.241 Sum_probs=76.0
Q ss_pred ccCCChhHHHHHHHHhhCccccCCc-hhhhhccCCCCcHHHHHHHHHHHHHHHHHHHhhccChhHH---HhcCchhhHHH
Q 003798 65 PLKQPRVISEMIGGIIVGPSILGRN-KKFAEAMLPDNSQLVVRSVGIMAFMYFMFIAGIKMDFTLL---KRCGRKHVYIA 140 (794)
Q Consensus 65 rl~~P~ii~~IlaGiilGP~~lg~~-~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l---~~~~~~~~~ia 140 (794)
++.+-...|-+++|+++|- ++.. |.+. -.| ......+.++|+.+|++.+|++--++.+ ++.+.+...++
T Consensus 412 p~~lg~~~g~l~~gl~~g~--~~~~~~~~~--~~p---~~a~~~l~~~GL~lFla~vG~~aG~~f~~~l~~~G~~~~~~g 484 (562)
T TIGR03802 412 PLTLGTGGGALISGLVFGW--LRSKHPTFG--NIP---SSASWLLKDLGLALFIAVVGLSAGPQAVTAIKEMGLTLFLLG 484 (562)
T ss_pred ceeehhhHHHHHHHHHHHH--hcccCCcce--ecC---HHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHH
Confidence 3444556788999999986 3322 1110 123 4566779999999999999998876554 56667777778
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCcchhhHHHHHHHH-HHHhhccHHHHHHHHHh
Q 003798 141 VTGVIIPTATSAAVAFLTRKSMDPELAKVSSIGAIT-TSLAVTSFPVLNPILKD 193 (794)
Q Consensus 141 ~~~~~~p~~l~~~~~~~l~~~~~~~~~~~~~~l~lg-~~ls~Ts~~vv~~iL~e 193 (794)
+.-.++|.+++..+++.+.+.. .....| .+-+.|++|.+......
T Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~--------~~~~~G~~aG~~t~t~~l~~a~~~ 530 (562)
T TIGR03802 485 IVVTILPLIITMLIGKYVLKYD--------PALLLGALAGARTATPALGAVLER 530 (562)
T ss_pred HHHHHHHHHHHHHHHHHHhCCC--------HHHHHHHhhccCCCcHHHHHHHHh
Confidence 8888888888888875443322 223344 44577888888766544
No 93
>PRK04972 putative transporter; Provisional
Probab=92.41 E-value=1.8 Score=50.84 Aligned_cols=118 Identities=17% Similarity=0.202 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHh-hcccCCChhHHHHHHHHhhCccccCCchhhhhccCCCCcHHHHHHHHHHHHHHHHHHHhhccChhHH
Q 003798 51 FIICTTSIIRFL-LKPLKQPRVISEMIGGIIVGPSILGRNKKFAEAMLPDNSQLVVRSVGIMAFMYFMFIAGIKMDFTLL 129 (794)
Q Consensus 51 lil~~~~l~~~l-l~rl~~P~ii~~IlaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l 129 (794)
+.+.++.+++.+ ++.+++-...|-+++|+++|-..+.. | ..+.++|+.+|+|.+|++.-+.-+
T Consensus 19 ~~i~lG~~lG~i~~~~~~LG~~~g~L~vgl~~g~~~~~~---------~-------~~~~~~gl~lF~~~vG~~~Gp~F~ 82 (558)
T PRK04972 19 VVLALGLCLGKLRLGSIQLGNSIGVLVVSLLLGQQHFSI---------N-------TDALNLGFMLFIFCVGVEAGPNFF 82 (558)
T ss_pred HHHHHHHhhhceEEeeEecCcchHHHHHHHHHHhCCCCC---------C-------hHHHHHHHHHHHHHHhhhhhHHHH
Confidence 334444444443 45566777779999999999743221 2 124589999999999999987665
Q ss_pred ---HhcCchhhHHHHHHHHHHHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHhhccHHHHHHHHH
Q 003798 130 ---KRCGRKHVYIAVTGVIIPTATSAAVAFLTRKSMDPELAKVSSIGAITTSLAVTSFPVLNPILK 192 (794)
Q Consensus 130 ---~~~~~~~~~ia~~~~~~p~~l~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~ 192 (794)
|+.+.+...+++...+++.+++..++++++... ....=..+-+.|++|.+.....
T Consensus 83 ~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~G~~aGa~T~tp~l~~a~~ 140 (558)
T PRK04972 83 SIFFRDGKNYLMLALVMVGSALVIALGLGKLFGWDI--------GLTAGMLAGSMTSTPVLVGAGD 140 (558)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCH--------HHHHHHhhccccCcHHHHHHHH
Confidence 455667777777777777777777776654322 1122223335666677665544
No 94
>PRK10490 sensor protein KdpD; Provisional
Probab=91.67 E-value=1.2 Score=55.78 Aligned_cols=123 Identities=10% Similarity=0.040 Sum_probs=83.5
Q ss_pred CCCceeEEEeccCCchHHHHHHHHhhCCCCCCCceEEEEEEeeecCCCccccccccccCCCCCCCcchHHHHHHHHhhhh
Q 003798 461 DTELRLVVCVHEEESVAGLINLLEVSCPTVDSPFSIYSLHLIELIGRGIPLLVDYENEEHSPEYTNDDAIHNALKLYSET 540 (794)
Q Consensus 461 ~~elriLv~v~~~~~~~~li~l~~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~ 540 (794)
....|||||+....+...+++-+..++...+ ...+++|+..-..+ . ......+++.+.++ ++++
T Consensus 248 ~~~eriLV~v~~~~~~~~lIr~~~rlA~~~~--a~~~~l~V~~~~~~--~-----------~~~~~~~~l~~~~~-lA~~ 311 (895)
T PRK10490 248 HTRDAILLCIGHNTGSEKLVRTAARLAARLG--SVWHAVYVETPRLH--R-----------LPEKKRRAILSALR-LAQE 311 (895)
T ss_pred CcCCeEEEEECCCcchHHHHHHHHHHHHhcC--CCEEEEEEecCCcC--c-----------CCHHHHHHHHHHHH-HHHH
Confidence 3567899999999999999999888876644 67889997642110 0 01122355666654 4444
Q ss_pred cCceEEEEeEEeccCCChhHHHHHHHHhcCCcEEEecCCCCCCCCCCCccccccc-hhHHHHHhhccCC-CceEEE
Q 003798 541 RGELKFNAFTALAPMRSMYQNICELALDNKATLIILPFHKEYPNNLEGTQILRRG-VQSVNIKVLSHAP-CSVGVL 614 (794)
Q Consensus 541 ~~~v~v~~~~~vs~~~~m~~dI~~~A~~~~a~lIilp~h~~~~~d~~g~~~~~~~-~~~~n~~vl~~Ap-CsVgIl 614 (794)
.+..+... ..+++.+.|.+.|++++++.||||-+++.+ . . -+++.+++++++| -+|=|+
T Consensus 312 -lGa~~~~~----~~~dva~~i~~~A~~~~vt~IViG~s~~~~------~----~~~~s~~~~l~r~~~~idi~iv 372 (895)
T PRK10490 312 -LGAETATL----SDPAEEKAVLRYAREHNLGKIIIGRRASRR------W----WRRESFADRLARLGPDLDLVIV 372 (895)
T ss_pred -cCCEEEEE----eCCCHHHHHHHHHHHhCCCEEEECCCCCCC------C----ccCCCHHHHHHHhCCCCCEEEE
Confidence 33443322 246899999999999999999999875521 0 1 2367999999997 565554
No 95
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=91.19 E-value=1.4 Score=51.56 Aligned_cols=116 Identities=13% Similarity=0.189 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHHhchhhhHHHHHHHhhcCCCCCch-hHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccchhhH
Q 003798 280 LLGVLVMGFLTDMFGMAIANGPLWLGLVIPDGPPLG-ATLVERTETLIMEIFMPFAFAVVGMYTDVYAMFEFGWSGLSPL 358 (794)
Q Consensus 280 l~~~l~~~~~ae~~G~~~~lgaflaGl~i~~~~~~~-~~l~~kl~~~~~~~~~PlfF~~~G~~~dl~~l~~~~~~~~~~~ 358 (794)
++.+.+...+++.+++++.++-+++|+++...+... -.+... ....+++|......|+++|...+. ..+..+
T Consensus 7 ~~~~~~~~~l~~r~~lP~~v~lil~Gi~lg~~~~~~~~~~~~~---~~~~~~Lp~lLF~~g~~~~~~~l~----~~~~~i 79 (525)
T TIGR00831 7 VMLATAVAVTVKFIRLPYPIALILAGLLLGLAGLLPEVPLDRE---IVLFLFLPPLLFEAAMNTDLRELR----ENFRPI 79 (525)
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHHhccccCCCCCCHH---HHHHHHHHHHHHHHHhcCCHHHHH----HHHHHH
Confidence 334444456677777888888888887775311110 011111 124578888888999999999886 233333
Q ss_pred HHHHHHHHHH-HHHHHHHHHHhcCCChHHHHHHHHHHHhHHHHHH
Q 003798 359 FGMIVTGYIS-KLLGTLIPSLLCQMPFRDSLTLSLMMSLRGQVEL 402 (794)
Q Consensus 359 ~~i~~~~~l~-K~~~~~l~~~~~~~~~~e~~~lgl~m~~kG~~~l 402 (794)
..+.+...+. -.+.++...+..++||..++.+|.++++...+..
T Consensus 80 ~~la~~~vlit~~~v~~~~~~~~~l~~~~alllGails~TDpvav 124 (525)
T TIGR00831 80 ALIAFLLVVVTTVVVGFSLNWILGIPLALALILGAVLSPTDAVAV 124 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHhCCCCHHHH
Confidence 3333333333 2333333334679999999999999998877654
No 96
>PRK10490 sensor protein KdpD; Provisional
Probab=89.73 E-value=1.6 Score=54.62 Aligned_cols=124 Identities=10% Similarity=0.101 Sum_probs=75.7
Q ss_pred ceEEEEEecCCccHHHHHHHHHHHhcCCCeEEEEEEeeccCCCCCchhhhhhHHHHHHHHHhhcCCCCceEEEEEEecCh
Q 003798 633 RHHFVVLFLGGADAREALAYADRMVGNLDVSLTVIRFLSFNHEGDDEMEKKLDDGLVTWFWVKNESNERVRYREVVVRNG 712 (794)
Q Consensus 633 ~~~I~v~f~GG~dDreAL~~A~rma~~~~v~ltvl~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~v~y~e~~v~~~ 712 (794)
..||+|...|+|+.+-+++.|.|||+.-++.+++++|.+++.....+.+++.-.+.++ +.++... .+ .. + .+
T Consensus 250 ~eriLV~v~~~~~~~~lIr~~~rlA~~~~a~~~~l~V~~~~~~~~~~~~~~~l~~~~~-lA~~lGa--~~--~~--~-~~ 321 (895)
T PRK10490 250 RDAILLCIGHNTGSEKLVRTAARLAARLGSVWHAVYVETPRLHRLPEKKRRAILSALR-LAQELGA--ET--AT--L-SD 321 (895)
T ss_pred CCeEEEEECCCcchHHHHHHHHHHHHhcCCCEEEEEEecCCcCcCCHHHHHHHHHHHH-HHHHcCC--EE--EE--E-eC
Confidence 4699999999999999999999999999999999999865432212222222222332 4333322 11 12 2 23
Q ss_pred HHHHHHHHhhhccCcccEEEEecccCCCCccccccCCCCCCCccchhhhhhhccCCCCceeEEEEE
Q 003798 713 AETVASIQAVNDEAYCDLWIVGRYQGINGKLLEGLEAWSEDNELGVIGDYVASIDFGSTASVLVMQ 778 (794)
Q Consensus 713 ~~~~~~i~~~~~~~~~DL~iVGr~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~~~SvLvvq 778 (794)
.|+.+.|-+.+....-+-+|+|++.+. -| + --|-+-|-|.-.. .+.-|.||=
T Consensus 322 ~dva~~i~~~A~~~~vt~IViG~s~~~---------~~--~-~~~s~~~~l~r~~--~~idi~iv~ 373 (895)
T PRK10490 322 PAEEKAVLRYAREHNLGKIIIGRRASR---------RW--W-RRESFADRLARLG--PDLDLVIVA 373 (895)
T ss_pred CCHHHHHHHHHHHhCCCEEEECCCCCC---------CC--c-cCCCHHHHHHHhC--CCCCEEEEe
Confidence 345455544433311578999998653 25 1 1356777777543 445777773
No 97
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=89.33 E-value=5.5 Score=38.57 Aligned_cols=121 Identities=19% Similarity=0.073 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHHhchh--hhHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccchhh
Q 003798 280 LLGVLVMGFLTDMFGMA--IANGPLWLGLVIPDGPPLGATLVERTETLIMEIFMPFAFAVVGMYTDVYAMFEFGWSGLSP 357 (794)
Q Consensus 280 l~~~l~~~~~ae~~G~~--~~lgaflaGl~i~~~~~~~~~l~~kl~~~~~~~~~PlfF~~~G~~~dl~~l~~~~~~~~~~ 357 (794)
+.+....+++.+.+|+. .++|+++++.++.-.....-.+-+.+.. +..-+.=..+|.+++...+.+ -...+..
T Consensus 4 ~~~~~~~g~l~~~l~~Pa~~llG~mi~~~~~~~~~~~~~~~P~~~~~----~~qviiG~~iG~~f~~~~l~~-~~~~~~~ 78 (156)
T TIGR03082 4 LLVGLAGGLLASLLGLPAAWLLGPLLAGAVLSLAGGLEITLPPWLLA----LAQVVIGILIGSRFTREVLAE-LKRLWPA 78 (156)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhcCCccCCCCHHHHH----HHHHHHHHHHHccCCHHHHHH-HHHHHHH
Confidence 34455566677888875 7889988888876432111122222222 223334567899998776651 1123444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhHHHHHHHHHHhh
Q 003798 358 LFGMIVTGYISKLLGTLIPSLLCQMPFRDSLTLSLMMSLRGQVELLLYIHW 408 (794)
Q Consensus 358 ~~~i~~~~~l~K~~~~~l~~~~~~~~~~e~~~lgl~m~~kG~~~l~~~~~~ 408 (794)
.+...+..++.-++.+++..+..++++.+++ ++ ..|-|.-++......
T Consensus 79 ~l~~~~~~l~~~~~~~~~l~~~~~~~~~ta~-La--~~PGGl~~m~~~A~~ 126 (156)
T TIGR03082 79 ALLSTVLLLALSALLAWLLARLTGVDPLTAF-LA--TSPGGASEMAALAAE 126 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH-HH--hCCchHHHHHHHHHH
Confidence 5555666667778888889999999998875 33 568888887775543
No 98
>TIGR00930 2a30 K-Cl cotransporter.
Probab=89.04 E-value=74 Score=40.18 Aligned_cols=128 Identities=11% Similarity=0.114 Sum_probs=76.8
Q ss_pred CceeEEEeccCCchHHHHHHHHhhCCCCCCCceEEEEEEeeecCCCccccccccccCCCCCCCcchHHHHHHHHhhhhcC
Q 003798 463 ELRLVVCVHEEESVAGLINLLEVSCPTVDSPFSIYSLHLIELIGRGIPLLVDYENEEHSPEYTNDDAIHNALKLYSETRG 542 (794)
Q Consensus 463 elriLv~v~~~~~~~~li~l~~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~ 542 (794)
.-++|+.+.+|++-+.+++++..+.+++. -..+.|+++.+.+.. ..+.++..+..+.+-+. .
T Consensus 575 rPqiLvl~~~p~~~~~Ll~f~~~l~~~~g---l~i~~~v~~~~~~~~--------------~~~~~~~~~~~~~~~~~-~ 636 (953)
T TIGR00930 575 RPQCLVLTGPPVCRPALLDFASQFTKGKG---LMICGSVIQGPRLEC--------------VKEAQAAEAKIQTWLEK-N 636 (953)
T ss_pred CCeEEEEeCCCcCcHHHHHHHHHhccCCc---EEEEEEEecCchhhh--------------HHHHHHHHHHHHHHHHH-h
Confidence 46899999999999999999999975443 445668877432110 01112222222333222 2
Q ss_pred ceEEEEeEEeccCCChhHHHHHHHHhc-----CCcEEEecCCCCCCCCCCCccccccchhHHHHHhhccCCCceEEE
Q 003798 543 ELKFNAFTALAPMRSMYQNICELALDN-----KATLIILPFHKEYPNNLEGTQILRRGVQSVNIKVLSHAPCSVGVL 614 (794)
Q Consensus 543 ~v~v~~~~~vs~~~~m~~dI~~~A~~~-----~a~lIilp~h~~~~~d~~g~~~~~~~~~~~n~~vl~~ApCsVgIl 614 (794)
++ +.+..+...+++.+++..+.+-. +.+.+++||...|+.+ .. +..+.+-+..+... ++...|.|+
T Consensus 637 ~~--~~f~~~~~~~~~~~g~~~l~q~~GlG~l~PNtv~lg~~~~w~~~--~~-~~~~~y~~~i~~a~-~~~~~v~i~ 707 (953)
T TIGR00930 637 KV--KAFYAVVVADDLREGVRHLIQASGLGRMKPNTLVMGYKKDWRQA--EP-RAWETYIGIIHDAF-DAHLAVVVV 707 (953)
T ss_pred CC--CeEEEEecCCCHHHHHHHHHHhcCCCCCCCCEEEecCccchhhc--cc-hhHHHHHHHHHHHH-HcCCcEEEE
Confidence 33 33444444469999999998865 4899999999988754 21 11122555555543 455555555
No 99
>PF03977 OAD_beta: Na+-transporting oxaloacetate decarboxylase beta subunit; InterPro: IPR005661 Members of this family are integral membrane proteins. The decarboxylation reactions they catalyse are coupled to the vectorial transport of Na+ across the cytoplasmic membrane, thereby creating a sodium ion motive force that is used for ATP synthesis [].; GO: 0016829 lyase activity, 0006814 sodium ion transport
Probab=88.63 E-value=1.1 Score=47.98 Aligned_cols=113 Identities=12% Similarity=0.247 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHHhcccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhHHHHHHHH
Q 003798 325 LIMEIFMPFAFAVVGMYTDVYAMFEFGWSGLSPLFGMIVTGYISKLLGTLIPSLLCQMPFRDSLTLSLMMSLRGQVELLL 404 (794)
Q Consensus 325 ~~~~~~~PlfF~~~G~~~dl~~l~~~~~~~~~~~~~i~~~~~l~K~~~~~l~~~~~~~~~~e~~~lgl~m~~kG~~~l~~ 404 (794)
+.++++=|+-|.-+|..+|++-+. .+.+. .++-..+-++ +..+++.+...|++.+|+..+|.+=+.-|-.++.+
T Consensus 66 i~~~l~P~LIF~GIGAmtDFgpll---anP~~--~llGaaAQ~G-if~t~~~A~~lGf~~~eAAsIgIIGgADGPtsIf~ 139 (360)
T PF03977_consen 66 ISNGLFPPLIFMGIGAMTDFGPLL---ANPKT--LLLGAAAQFG-IFATFLGAILLGFTPKEAASIGIIGGADGPTSIFV 139 (360)
T ss_pred hhcchhhHHHHHHHhHHHhhHHHH---hCHHH--HHHHHHHHHh-HHHHHHHHHHhCCCHHHhhHhhhcccCCCcHHHHH
Confidence 347888899999999999998876 33332 2222333333 34466777788999999999999877788888776
Q ss_pred HHhhhhccccCCchhHHHHHHHHHHHHhHHHHHHhhcCCCC
Q 003798 405 YIHWIDKLIIGVPPFTLLVLSTVVITGIAGPLISFLYDPTR 445 (794)
Q Consensus 405 ~~~~~~~~ii~~~~~~~lv~~~ll~t~i~~plv~~l~~~~~ 445 (794)
.+... -+.+.+-...+-.-|+++ =.+.||++|.+-.+++
T Consensus 140 s~~LA-p~LlgpIaVaAYsYMaLv-PiiqPpimklLttkke 178 (360)
T PF03977_consen 140 SSKLA-PHLLGPIAVAAYSYMALV-PIIQPPIMKLLTTKKE 178 (360)
T ss_pred HHhhh-HHHHHHHHHHHHHHHHHH-hhhhhHHHHHhcCHHH
Confidence 65432 223333222333344555 6778999998865443
No 100
>TIGR03136 malonate_biotin Na+-transporting malonate decarboxylase, carboxybiotin decarboxylase subunit. Malonate decarboxylase can be a soluble enzyme, or a sodium ion-translocating with additional membrane-bound components. Members of this protein family are integral membrane proteins required to couple decarboxylation to sodium ion export. This family belongs to a broader family, TIGR01109 of sodium ion-translocating decarboxylase beta subunits.
Probab=88.48 E-value=6.2 Score=42.89 Aligned_cols=115 Identities=11% Similarity=0.086 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHHHhcccccccccccccccchhhHHHH-HHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhHHHHHH
Q 003798 324 TLIMEIFMPFAFAVVGMYTDVYAMFEFGWSGLSPLFGM-IVTGYISKLLGTLIPSLLCQMPFRDSLTLSLMMSLRGQVEL 402 (794)
Q Consensus 324 ~~~~~~~~PlfF~~~G~~~dl~~l~~~~~~~~~~~~~i-~~~~~l~K~~~~~l~~~~~~~~~~e~~~lgl~m~~kG~~~l 402 (794)
.+.++++=|+-|.-+|..+|++-+. ...+. .++ -..+-++-+ .+++.+...|++.+|+..+|.+=+.-|-.++
T Consensus 101 gi~~gl~P~LIFlGIGAMtDFgpll---anP~~--~ll~gaaAQ~GiF-~t~~~A~~lGF~~~eAAsIgIIGgADGPTaI 174 (399)
T TIGR03136 101 TFSNSLVACILFFGIGAMSDISFIL---ARPWA--SITVALFAEMGTF-ATLVIGYYCGLTPGEAAAVGTIGGADGPMVL 174 (399)
T ss_pred HHhcccHHHHHHHhccHHhcchHHH---hChHH--HHHHHHHHHhhHH-HHHHHHHHcCCCHHHhhHHhhcccCCccHHH
Confidence 3467889999999999999998876 23332 222 223334333 3556667789999999999998777888887
Q ss_pred HHHHhhhhccccCCchhHHHHHHHHHHHHhHHHHHHhhcCCCCc
Q 003798 403 LLYIHWIDKLIIGVPPFTLLVLSTVVITGIAGPLISFLYDPTRP 446 (794)
Q Consensus 403 ~~~~~~~~~~ii~~~~~~~lv~~~ll~t~i~~plv~~l~~~~~~ 446 (794)
.+.+... -+.+.+-...+-.-|+++ =.+-||++|.+-.+++|
T Consensus 175 f~s~kLA-p~Llg~IaVAAYsYMaLV-PiiqPpimklLttkkER 216 (399)
T TIGR03136 175 FASLILA-KDLFVPISIIAYLYLSLT-YAGYPYLIKLLVPKKYR 216 (399)
T ss_pred HHHHhhh-hHhHHHHHHHHHHHHHHH-hcccchHHHhhcCHHHH
Confidence 7665432 223333222333334555 67789999988654433
No 101
>PF02040 ArsB: Arsenical pump membrane protein; InterPro: IPR000802 Arsenic is a toxic metalloid whose trivalent and pentavalent ions inhibit a variety of biochemical processes. Operons that encode arsenic resistance have been found in multicopy plasmids from both Gram-positive and Gram-negative bacteria []. The resistance mechanism is encoded from a single operon, which houses an anion pump. The pump has two polypeptide components: a catalytic subunit (the ArsA protein), which functions as an oxyanion-stimulated ATPase; and an arsenite export component (the ArsB protein), which is associated with the inner membrane []. The ArsA and ArsB proteins are thought to form a membrane complex that functions as an anion-translocating ATPase. The ArsB protein is distinguished by its overall hydrophobic character, in keeping with its role as a membrane-associated channel. Sequence analysis reveals the presence of 13 putative transmembrane (TM) regions.; GO: 0015105 arsenite transmembrane transporter activity, 0016021 integral to membrane
Probab=88.41 E-value=50 Score=37.46 Aligned_cols=37 Identities=14% Similarity=0.187 Sum_probs=29.0
Q ss_pred HHHHHHHHHhcCccCChhHHHHHHHHHHHHHHHHHHH
Q 003798 184 FPVLNPILKDLNLLSSEMGRMAIVTAVIGDAIGINIV 220 (794)
Q Consensus 184 ~~vv~~iL~el~l~~s~~g~l~ls~a~v~D~~~~ill 220 (794)
.|++..+.+.+|+.+.+.--.+++++.+.|..+..+-
T Consensus 117 TPivla~~~~~~~~~~~~lp~l~a~~~iAntASl~Lp 153 (423)
T PF02040_consen 117 TPIVLALARRLGLNPKPPLPFLFACAFIANTASLLLP 153 (423)
T ss_pred HHHHHHHHHHcCCCcccchHHHHHHHHHhhhhhcccc
Confidence 4888888888887665555788899999999987653
No 102
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=87.41 E-value=15 Score=41.34 Aligned_cols=169 Identities=18% Similarity=0.186 Sum_probs=107.4
Q ss_pred HHHHHHHHHHHHHHHHhhcc--cCCChhHHHHHHHHhhCccccCCchhhhhccCCCCcHHHHHHHHHHHHHHHHHHHhhc
Q 003798 46 LFEIVFIICTTSIIRFLLKP--LKQPRVISEMIGGIIVGPSILGRNKKFAEAMLPDNSQLVVRSVGIMAFMYFMFIAGIK 123 (794)
Q Consensus 46 l~~i~lil~~~~l~~~ll~r--l~~P~ii~~IlaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle 123 (794)
+..+.+...+++.+...++. +.+|..++-+++|+++.+.. .... ... -.++..+.++++.+-+++-.+=..
T Consensus 221 l~~i~iai~iG~~i~~~l~~~~~~lP~fv~am~~giiirni~-~~~~-----~~~-~~~~~i~~I~~~sLdlfl~~Alms 293 (398)
T TIGR00210 221 IALIAVCLLVGYELNDLVAKTALMLPTFVWCLFVGVILRNPL-SFKK-----FPW-VAERAVSVIGNVSLSLFLAIALMS 293 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHH-HHhC-----ccc-cchHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555667777777764 77999999999999998642 1110 001 124589999999999999988889
Q ss_pred cChhHHHhcCchhhHHHHHHHHHHHHHHHHHHH-HhhccCCcchhhHHHHHHHHHHHhhccHHHHH-HHH-HhcCccCCh
Q 003798 124 MDFTLLKRCGRKHVYIAVTGVIIPTATSAAVAF-LTRKSMDPELAKVSSIGAITTSLAVTSFPVLN-PIL-KDLNLLSSE 200 (794)
Q Consensus 124 ~d~~~l~~~~~~~~~ia~~~~~~p~~l~~~~~~-~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~-~iL-~el~l~~s~ 200 (794)
+++..+....-....+.+.++++..+....+.+ .+++.+. .....+-..|..+-.|+.++.- +.+ +++|-.+.-
T Consensus 294 L~L~~l~~~a~Plliil~~q~i~~~l~~~fv~fr~mg~~yd---aaV~~ag~~G~~lGatptaianm~av~~~yg~s~~a 370 (398)
T TIGR00210 294 LQLWELADLAGPIALILLVQVMFMALYAIFVTFRLMGKDYD---AAVLCAGHCGFGLGATPTAIANMQAVTERFGPSHQA 370 (398)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhccchHH---HHHHhcccccccccchHHHHHHHHHHHhccCCCCcc
Confidence 999999999999999999999888866554443 3444321 0111223455555555443322 333 333433333
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 003798 201 MGRMAIVTAVIGDAIGINIVIAFE 224 (794)
Q Consensus 201 ~g~l~ls~a~v~D~~~~ill~v~~ 224 (794)
.=-+=+-.+.+-|++...++..++
T Consensus 371 f~ivPlvgaf~id~~n~~~i~~f~ 394 (398)
T TIGR00210 371 FIVVPLVGAFFIDIINALVIKQFL 394 (398)
T ss_pred eehhhhHHHHHHHHhhHHHHHHHH
Confidence 333344567888888766655443
No 103
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=87.11 E-value=5.1 Score=42.97 Aligned_cols=76 Identities=16% Similarity=0.257 Sum_probs=57.4
Q ss_pred hHHHHHHHHhhCccccCCchhhhhccCCCCcHHHHHHHHHHHHHHHHHHHhhccChhHHHhcCchhhHHHHHHHHHHHHH
Q 003798 71 VISEMIGGIIVGPSILGRNKKFAEAMLPDNSQLVVRSVGIMAFMYFMFIAGIKMDFTLLKRCGRKHVYIAVTGVIIPTAT 150 (794)
Q Consensus 71 ii~~IlaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~~~p~~l 150 (794)
.+--|+.|+++|+. ....+ +.++.-.++++.|+.|..|..+|++.+.+.+.+.+.+++..+.+++.+
T Consensus 169 lilpILiGmilGNl-d~~~~------------~~l~~Gi~f~I~f~~f~LG~~lnl~~I~~~G~~GIlL~v~vv~~t~~~ 235 (312)
T PRK12460 169 ALLPLVLGMILGNL-DPDMR------------KFLTKGGPLLIPFFAFALGAGINLSMLLQAGLAGILLGVLVTIVTGFF 235 (312)
T ss_pred HHHHHHHHHHHhcc-chhhH------------HHHhccceEeHHHHHHHhcCCeeHHHHHHhChHHHHHHHHHHHHHHHH
Confidence 55557788888872 11122 222222334888899999999999999999999999999999999988
Q ss_pred HHHHHHHhh
Q 003798 151 SAAVAFLTR 159 (794)
Q Consensus 151 ~~~~~~~l~ 159 (794)
++.+..+++
T Consensus 236 ~~~i~rllg 244 (312)
T PRK12460 236 NIFADRLVG 244 (312)
T ss_pred HHHHHHHhC
Confidence 888887774
No 104
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=86.95 E-value=3.7 Score=39.73 Aligned_cols=96 Identities=18% Similarity=0.219 Sum_probs=60.1
Q ss_pred HHHHHHHHHHhhcccCCC--hhHHHHHHHHhhCccccCCchhhhhccCCCCcHHHHHHHHHHHHHHHHHHHhhccChhHH
Q 003798 52 IICTTSIIRFLLKPLKQP--RVISEMIGGIIVGPSILGRNKKFAEAMLPDNSQLVVRSVGIMAFMYFMFIAGIKMDFTLL 129 (794)
Q Consensus 52 il~~~~l~~~ll~rl~~P--~ii~~IlaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l 129 (794)
.+.++.+.+.+++++|+| ..+|-++++.++.-. +..+ .-.| +.+.+++.+++--.+|.+++.+.+
T Consensus 3 ~~~~~~~~g~l~~~l~~Pa~~llG~mi~~~~~~~~--~~~~----~~~P-------~~~~~~~qviiG~~iG~~f~~~~l 69 (156)
T TIGR03082 3 LLLVGLAGGLLASLLGLPAAWLLGPLLAGAVLSLA--GGLE----ITLP-------PWLLALAQVVIGILIGSRFTREVL 69 (156)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhc--CCcc----CCCC-------HHHHHHHHHHHHHHHHccCCHHHH
Confidence 455677788899999988 566666666665522 2111 0012 245566667777789999999988
Q ss_pred HhcCchhhHHHHHHHHHHHHHHHHHHHHhhcc
Q 003798 130 KRCGRKHVYIAVTGVIIPTATSAAVAFLTRKS 161 (794)
Q Consensus 130 ~~~~~~~~~ia~~~~~~p~~l~~~~~~~l~~~ 161 (794)
++..+.. ..++...++...++.+.++++.+.
T Consensus 70 ~~~~~~~-~~~l~~~~~~l~~~~~~~~~l~~~ 100 (156)
T TIGR03082 70 AELKRLW-PAALLSTVLLLALSALLAWLLARL 100 (156)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7665433 334455555566666666666553
No 105
>TIGR00808 malonate_madM malonate transporter, MadM subunit. The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM.The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=85.87 E-value=9.4 Score=37.98 Aligned_cols=110 Identities=14% Similarity=0.176 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHHHHhhcccCCChhHHHHHHHHhhCccccCCchhhhhccCCCCcHHHHHHHHHHHHH-------HHHH
Q 003798 46 LFEIVFIICTTSIIRFLLKPLKQPRVISEMIGGIIVGPSILGRNKKFAEAMLPDNSQLVVRSVGIMAFM-------YFMF 118 (794)
Q Consensus 46 l~~i~lil~~~~l~~~ll~rl~~P~ii~~IlaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~-------~llF 118 (794)
+..++++..++.++..-+.|=|++.----|+.|+++.... |.... -.+....+..++.+|++ |-.-
T Consensus 18 Fa~vG~~m~~s~~lS~~lT~Gr~hgSAIAI~lGL~lAy~g-G~~Tg------G~kGlaDi~lfsGiglmGGaMlRDfAIv 90 (254)
T TIGR00808 18 FAVVGLMMYVSHLLSKYLTKGKLHGSAIAITMGLVLAYVG-GVYTG------GEKGLADIAIFGGFGLMGGAMLRDLAIV 90 (254)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHc-ccccC------CccccchhhhhcchhhhhhHHHHHHHHH
Confidence 3334444444444444444446776666788898886432 11100 01222233334444432 2233
Q ss_pred HHhhccChhHHHhcCchhhHHHHHHHHHHHHHHHHHHHHhhccC
Q 003798 119 IAGIKMDFTLLKRCGRKHVYIAVTGVIIPTATSAAVAFLTRKSM 162 (794)
Q Consensus 119 ~~Gle~d~~~l~~~~~~~~~ia~~~~~~p~~l~~~~~~~l~~~~ 162 (794)
....|.|.+++||.+..-..--+.+..+||+.+..+++.+++..
T Consensus 91 aTAf~v~~~e~kkaG~~G~vsL~~G~v~~F~~Ga~vA~afGY~D 134 (254)
T TIGR00808 91 ATAFEVDVKEVKKAGKVGMVALLLGCVIPFVIGAMVAWAFGYRD 134 (254)
T ss_pred HHhhcCcHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 56789999999999998888888899999999999999998754
No 106
>COG2985 Predicted permease [General function prediction only]
Probab=85.73 E-value=3.8 Score=46.05 Aligned_cols=107 Identities=19% Similarity=0.208 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHhhccChhHH---HhcCchhhHHHHHHHHHHHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHhhccHHH
Q 003798 110 IMAFMYFMFIAGIKMDFTLL---KRCGRKHVYIAVTGVIIPTATSAAVAFLTRKSMDPELAKVSSIGAITTSLAVTSFPV 186 (794)
Q Consensus 110 ~lgl~~llF~~Gle~d~~~l---~~~~~~~~~ia~~~~~~p~~l~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~v 186 (794)
++|+++|.+.+|+|--+..+ |+.+++-..+++.- ++.+..+++++.+..+.+. ......+-| +.||.|.
T Consensus 62 ~lGL~LFVy~iGl~aGP~FFss~~~~Gl~~~~~alli----vi~~~~~a~~l~k~~~~~~-~~~~Gm~sG---AlTsTP~ 133 (544)
T COG2985 62 ELGLILFVYTIGLEAGPGFFSSFRKSGLNLNAFALLI----VIAALLLAWVLHKLFGIDL-GLIAGMFSG---ALTSTPG 133 (544)
T ss_pred hhhhhHhhhhhhheecccHhHHHHHhhhHHHHHHHHH----HHHHHHHHHHHHhhcCCCH-HHhhhhhcc---cccCCch
Confidence 89999999999999987654 67777777666554 3444455555554433110 011122222 3445454
Q ss_pred H---HHHHHhcCccCChhH--HHHHHHHHHHHHHHHHHHHHHH
Q 003798 187 L---NPILKDLNLLSSEMG--RMAIVTAVIGDAIGINIVIAFE 224 (794)
Q Consensus 187 v---~~iL~el~l~~s~~g--~l~ls~a~v~D~~~~ill~v~~ 224 (794)
. ..+|.|++....-.- .+..+.+..-.++++++.+-..
T Consensus 134 L~aa~~~L~~lg~~~~~~~~~~~gYamaYp~Gil~ii~~~~l~ 176 (544)
T COG2985 134 LGAAQDILRELGAPSQALDQMGMGYALAYPIGILGIILGAWLL 176 (544)
T ss_pred hHHHHHHHHhhccchhhhhhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 4 456777764322122 2333445555566665554433
No 107
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=85.61 E-value=16 Score=39.79 Aligned_cols=136 Identities=11% Similarity=0.099 Sum_probs=79.8
Q ss_pred cCCChhHHHHHHHHhhCccccCCchhhhhccCCCCcHHHHHHHHHHHHHHHHHHHhhccChhHHHhcCchhhHHHHHHH-
Q 003798 66 LKQPRVISEMIGGIIVGPSILGRNKKFAEAMLPDNSQLVVRSVGIMAFMYFMFIAGIKMDFTLLKRCGRKHVYIAVTGV- 144 (794)
Q Consensus 66 l~~P~ii~~IlaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~- 144 (794)
++.|.+++.+ +|+++...... .|.--.+.++.+++...-+-||..|+.++.+.+++..+........-.
T Consensus 180 ~~nP~iia~i-~Gl~~~~~~i~---------lP~~l~~~l~~lg~~~~plaLl~lG~~l~~~~~~~~~~~~~~~~~~kli 249 (321)
T TIGR00946 180 IKFPPLWAPL-LSVILSLVGFK---------MPGLILKSISILSGATTPMALFSLGLALSPRKIKLGVRDAILALIVRFL 249 (321)
T ss_pred HhCCChHHHH-HHHHHHHHhhc---------CcHHHHHHHHHHHHHHHHHHHHHHHHhhChhhhccChHHHHHHHHHHHH
Confidence 5778777654 45777653222 233346889999999999999999999998888777666666655555
Q ss_pred HHHHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHhhccHHHHHHHHHhcCccCChhHHHHHHHHHHHHHHHHHHHHHH
Q 003798 145 IIPTATSAAVAFLTRKSMDPELAKVSSIGAITTSLAVTSFPVLNPILKDLNLLSSEMGRMAIVTAVIGDAIGINIVIAF 223 (794)
Q Consensus 145 ~~p~~l~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~l~~s~~g~l~ls~a~v~D~~~~ill~v~ 223 (794)
+.|.+ .+++..+++.. ....-.....+....++.+.++.+.--.+. +.+-+...++-+++++.+.+.
T Consensus 250 l~P~i-~~~~~~~~~l~--------~~~~~~~vl~aa~P~a~~~~i~A~~y~~~~---~~aa~~v~~sT~ls~~tlp~~ 316 (321)
T TIGR00946 250 VQPAV-MAGISKLIGLR--------GLELSVAILQAALPGGAVAAVLATEYEVDV---ELASTAVTLSTVLSLISLPLF 316 (321)
T ss_pred HHHHH-HHHHHHHhCCC--------hHHHHHHHHHHcCChhhHHHHHHHHhCCCH---HHHHHHHHHHHHHHHHHHHHH
Confidence 34443 34444444321 122334444555545555555554322232 444444455555555544433
No 108
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=84.74 E-value=45 Score=34.14 Aligned_cols=111 Identities=10% Similarity=0.080 Sum_probs=79.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 003798 315 GATLVERTETLIMEIFMPFAFAVVGMYTDVYAMFEFGWSGLSPLFGMIVTGYISKLLGTLIPSLLCQMPFRDSLTLSLMM 394 (794)
Q Consensus 315 ~~~l~~kl~~~~~~~~~PlfF~~~G~~~dl~~l~~~~~~~~~~~~~i~~~~~l~K~~~~~l~~~~~~~~~~e~~~lgl~m 394 (794)
++.+..-+++-+-.+..|+|= +...+. +.|.....-++++.+.-++.+++.++++|.+.. +. ..+
T Consensus 61 ~~~i~~lLgPAtVAlAvPLYk-------q~~~ik----~~w~~I~~g~~vGs~~ai~s~~llak~~g~~~~--~~--~Sl 125 (230)
T COG1346 61 GQWINFLLGPATVALAVPLYK-------QRHLIK----RHWKPILAGVLVGSVVAIISGVLLAKLFGLSPE--LI--LSL 125 (230)
T ss_pred cHHHHHHHHHHHHHHhhHHHH-------HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH--HH--HHh
Confidence 556666777777778888872 344454 567667777777888888899999999998753 33 335
Q ss_pred HhHHHHHHHHHHhhhhccccCCchhHHHHHHHHHHHHhHHHHHHhh
Q 003798 395 SLRGQVELLLYIHWIDKLIIGVPPFTLLVLSTVVITGIAGPLISFL 440 (794)
Q Consensus 395 ~~kG~~~l~~~~~~~~~~ii~~~~~~~lv~~~ll~t~i~~plv~~l 440 (794)
.||....-+...+..+.|-+.+-.-..++++-++...+.+++++++
T Consensus 126 ~PkSvTTpiAm~vs~~iGGip~ltav~Vi~tGi~Gavlg~~llk~~ 171 (230)
T COG1346 126 LPKSVTTPIAMEVSESIGGIPALTAVFVILTGILGAVLGPLLLKLL 171 (230)
T ss_pred cccccccHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7999999888888888887766555666666666555555566654
No 109
>PRK04972 putative transporter; Provisional
Probab=83.13 E-value=10 Score=44.63 Aligned_cols=112 Identities=17% Similarity=0.170 Sum_probs=76.2
Q ss_pred CCChhHHHHHHHHhhCccccCCc-hhhhhccCCCCcHHHHHHHHHHHHHHHHHHHhhccChhHH---HhcCchhhHHHHH
Q 003798 67 KQPRVISEMIGGIIVGPSILGRN-KKFAEAMLPDNSQLVVRSVGIMAFMYFMFIAGIKMDFTLL---KRCGRKHVYIAVT 142 (794)
Q Consensus 67 ~~P~ii~~IlaGiilGP~~lg~~-~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l---~~~~~~~~~ia~~ 142 (794)
++-.--|-+++|+++|- ++.. |.+.. .| .....++.++|+.+|+..+|+.--.+.+ ++.+.+.+.++..
T Consensus 409 ~LG~agG~L~~gl~~g~--~~~~~~~~~~--~p---~~a~~~l~~~GL~lFla~vGl~aG~~f~~~~~~~g~~~~~~g~~ 481 (558)
T PRK04972 409 GIGNAAGLLFAGIMLGF--LRANHPTFGY--IP---QGALNMVKEFGLMVFMAGVGLSAGSGINNGLGAVGGQMLIAGLI 481 (558)
T ss_pred eccccHHHHHHHHHHHh--ccccCCCcee--eC---HHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHH
Confidence 34445678999999986 3332 21111 23 4567789999999999999998765444 5566777778888
Q ss_pred HHHHHHHHHHHHHHHhhccCCcchhhHHHHHHHH-HHHhhccHHHHHHHHHh
Q 003798 143 GVIIPTATSAAVAFLTRKSMDPELAKVSSIGAIT-TSLAVTSFPVLNPILKD 193 (794)
Q Consensus 143 ~~~~p~~l~~~~~~~l~~~~~~~~~~~~~~l~lg-~~ls~Ts~~vv~~iL~e 193 (794)
-.++|.++++.+++++.+.. . ...+| .+-+.|++|.+......
T Consensus 482 ~t~~~~~~~~~~~~~~~k~~-------~-~~~~G~~aG~~t~~~~l~~~~~~ 525 (558)
T PRK04972 482 VSLVPVVICFLFGAYVLRMN-------R-ALLFGAIMGARTCAPAMEIISDT 525 (558)
T ss_pred HHHHHHHHHHHHHHHHHcCC-------H-HHHHHHHhCCCCCcHHHHHHHhh
Confidence 88888888888886665532 2 23444 55577888877766443
No 110
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=82.14 E-value=8.8 Score=42.86 Aligned_cols=135 Identities=16% Similarity=0.116 Sum_probs=71.5
Q ss_pred hHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHH-hcccccccccccccccchhhHHHHHHHHHHHHHHHHHHH
Q 003798 298 ANGPLWLGLVIPDGPPLGATLVERTETLIMEIFMPFAFAV-VGMYTDVYAMFEFGWSGLSPLFGMIVTGYISKLLGTLIP 376 (794)
Q Consensus 298 ~lgaflaGl~i~~~~~~~~~l~~kl~~~~~~~~~PlfF~~-~G~~~dl~~l~~~~~~~~~~~~~i~~~~~l~K~~~~~l~ 376 (794)
++...++|.+..+..-+.++-.+.+..++..+++|.+... ++-..+...+. .++.+.+..++..+.=++.+++.
T Consensus 9 i~~ii~~G~~~~~~~~l~~~~~~~ls~lv~~~~lP~liF~~i~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 83 (385)
T PF03547_consen 9 IFLIILLGYLLGRFGILDPEASKGLSKLVFNVFLPALIFSSIANTDTLEDLL-----SLWFIPVFAFIIFILGLLLGFLL 83 (385)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhh-----hhHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556666665445667778889999999999987544 33333333332 23333333334444445556666
Q ss_pred HHhcCCChHHHHH--HHHHHHhHHHHHHHHHHhhhhccccCCchhHHHHHHHHHHHHhHHHHHHhhcC
Q 003798 377 SLLCQMPFRDSLT--LSLMMSLRGQVELLLYIHWIDKLIIGVPPFTLLVLSTVVITGIAGPLISFLYD 442 (794)
Q Consensus 377 ~~~~~~~~~e~~~--lgl~m~~kG~~~l~~~~~~~~~~ii~~~~~~~lv~~~ll~t~i~~plv~~l~~ 442 (794)
.++++.+.+++.. ++...+.-|.+.+-+....+.. +.....++..++...+.-++...+..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~N~~~lglpi~~~l~g~-----~~~~~~~~~~~~~~i~~~~~~~~l~~ 146 (385)
T PF03547_consen 84 SRLFRLPKEWRGVFVLAASFGNTGFLGLPILQALFGE-----RGVAYAIIFDVVNNIILWSLGYFLLE 146 (385)
T ss_pred HHhcCCCcccceEEEecccCCcchhhHHHHHHHHhcc-----hhhhhehHHHHhhHHHHHHHHHHhhc
Confidence 7777776655433 3333344566666555444332 33333333344434444444444433
No 111
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=81.49 E-value=63 Score=33.36 Aligned_cols=111 Identities=13% Similarity=0.081 Sum_probs=71.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 003798 315 GATLVERTETLIMEIFMPFAFAVVGMYTDVYAMFEFGWSGLSPLFGMIVTGYISKLLGTLIPSLLCQMPFRDSLTLSLMM 394 (794)
Q Consensus 315 ~~~l~~kl~~~~~~~~~PlfF~~~G~~~dl~~l~~~~~~~~~~~~~i~~~~~l~K~~~~~l~~~~~~~~~~e~~~lgl~m 394 (794)
++-+..-+.+-+-.+..|+|= +...+. ..|..+..-++++.+.-++++++.++++|.+.. + -..|
T Consensus 64 ~~~l~~lLgPAtVALAvPLY~-------q~~~lk----~~~~~Il~~~~vG~~~~i~s~~~la~~lgl~~~--~--~~Sl 128 (232)
T PRK04288 64 GDIISFFLEPATIAFAIPLYK-------KRDVLK----KYWWQILGGIVVGSVCSVLIIYLVAKLIQLDNA--V--MASM 128 (232)
T ss_pred hHHHHHHHHHHHHHHHHHHHH-------hHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHH--H--HHHH
Confidence 445555666666677778772 344444 355555666666777778888889999988752 2 3446
Q ss_pred HhHHHHHHHHHHhhhhccccCCchhHHHHHHHHHHHHhHHHHHHhh
Q 003798 395 SLRGQVELLLYIHWIDKLIIGVPPFTLLVLSTVVITGIAGPLISFL 440 (794)
Q Consensus 395 ~~kG~~~l~~~~~~~~~~ii~~~~~~~lv~~~ll~t~i~~plv~~l 440 (794)
.+|....-+...+..+.|-+..-.-..++++-++-..+.+++++++
T Consensus 129 ~pKSVTtPIAm~is~~iGG~psLtA~~ViitGi~Gai~g~~llk~~ 174 (232)
T PRK04288 129 LPQAATTAIALPVSAGIGGIKEITSFAVIFNAVIIYALGAKFLKLF 174 (232)
T ss_pred hhHhhhHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 7999998888888887776554444455555555444445555654
No 112
>KOG2310 consensus DNA repair exonuclease MRE11 [Replication, recombination and repair]
Probab=81.22 E-value=2.6 Score=47.75 Aligned_cols=131 Identities=15% Similarity=0.187 Sum_probs=76.0
Q ss_pred hHHHHHHHHhcCCcEEEec---CCCCCCCCCCCccccccc-hhHHHHHhhccCCCceEEEecCCCCCCCC--cccCCCcc
Q 003798 559 YQNICELALDNKATLIILP---FHKEYPNNLEGTQILRRG-VQSVNIKVLSHAPCSVGVLVDKGNFRNPM--HAAGGSMR 632 (794)
Q Consensus 559 ~~dI~~~A~~~~a~lIilp---~h~~~~~d~~g~~~~~~~-~~~~n~~vl~~ApCsVgIlvdRg~~~~~~--~~~~~~~~ 632 (794)
+++||.+|+++++|+|++| ||..-.+ ...-+. ++.+=+.-+-+-||..=++-|.+...+.. ..+--.+.
T Consensus 41 FeEIl~iA~e~~VDmiLlGGDLFHeNkPS-----r~~L~~~i~lLRryClgdkP~~le~lSD~s~~f~~~~f~~VNY~Dp 115 (646)
T KOG2310|consen 41 FEEILEIAQENDVDMILLGGDLFHENKPS-----RKTLHRCLELLRRYCLGDKPVQLEILSDQSVNFGNSVFGNVNYEDP 115 (646)
T ss_pred HHHHHHHHHhcCCcEEEecCcccccCCcc-----HHHHHHHHHHHHHHccCCCceeeEEecccceeccccccceecccCC
Confidence 5789999999999999999 6754211 111123 66777777889999999998887543221 01111122
Q ss_pred ceEEEEEecC--CccHHHH-------H------HHHHHHhcCCC-eEEEEEEeeccCCCCC---chhhhhhHHHHHHHHH
Q 003798 633 RHHFVVLFLG--GADAREA-------L------AYADRMVGNLD-VSLTVIRFLSFNHEGD---DEMEKKLDDGLVTWFW 693 (794)
Q Consensus 633 ~~~I~v~f~G--G~dDreA-------L------~~A~rma~~~~-v~ltvl~~~~~~~~~~---~~~~~~~d~~~l~~~~ 693 (794)
-.+|.+|.++ |.||.-+ | -+..-..+.++ -+++|.-++....... -......|+.+.+-|+
T Consensus 116 NlNIsIPVFsIHGNHDDpSG~~~lsalDIL~~~GLVNyFGk~~~id~I~vsPiLlqKG~tklALYGLg~irDeRL~R~Fk 195 (646)
T KOG2310|consen 116 NLNISIPVFSIHGNHDDPSGDGRLSALDILSAAGLVNYFGKVSEIDKIDVSPILLQKGSTKLALYGLGSIRDERLYRMFK 195 (646)
T ss_pred CcceeeeeEEeecCCCCCccccccchHHHHHhcchhhhhccccCcceEEEEeeeeccCceeEEEeeccccchHHHHHHHH
Confidence 3578888776 7766432 1 23333444443 4555555553321000 0012256777877776
Q ss_pred h
Q 003798 694 V 694 (794)
Q Consensus 694 ~ 694 (794)
.
T Consensus 196 ~ 196 (646)
T KOG2310|consen 196 N 196 (646)
T ss_pred h
Confidence 5
No 113
>PRK03818 putative transporter; Validated
Probab=80.58 E-value=38 Score=39.97 Aligned_cols=105 Identities=15% Similarity=0.164 Sum_probs=70.9
Q ss_pred hHHHHHHHHhhCccccCCc-hhhhhccCCCCcHHHHHHHHHHHHHHHHHHHhhccChhHHHh----cCchhhHHHHHHHH
Q 003798 71 VISEMIGGIIVGPSILGRN-KKFAEAMLPDNSQLVVRSVGIMAFMYFMFIAGIKMDFTLLKR----CGRKHVYIAVTGVI 145 (794)
Q Consensus 71 ii~~IlaGiilGP~~lg~~-~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~----~~~~~~~ia~~~~~ 145 (794)
.-|-+++|+++|-. +.. |.+ +-.| ......+.++|+.+|+..+|++--...+.. .+.+...+|+.-.+
T Consensus 403 ~~G~L~~gl~~g~~--~~~~~~~--~~~p---~~a~~~l~~~GL~lFla~vGl~aG~~f~~~~~~~~G~~~~~~g~~v~~ 475 (552)
T PRK03818 403 AGGPLIVALILGRI--GSIGKLY--WFMP---PSANLALRELGIVLFLAVVGLKSGGDFVDTLVNGEGLSWIGYGFLITA 475 (552)
T ss_pred chHHHHHHHHHHhc--cCCCCce--eecC---HHHHHHHHHHhHHHHHHHHHhhhhHHHHHHHhccchHHHHHHHHHHHH
Confidence 45789999999863 332 211 1123 456778889999999999999887665543 35666677788888
Q ss_pred HHHHHHHHHHHHhhccCCcchhhHHHHHHHH-HHHhhccHHHHHHH
Q 003798 146 IPTATSAAVAFLTRKSMDPELAKVSSIGAIT-TSLAVTSFPVLNPI 190 (794)
Q Consensus 146 ~p~~l~~~~~~~l~~~~~~~~~~~~~~l~lg-~~ls~Ts~~vv~~i 190 (794)
+|.++++.+++++.+.. ....+| .+-+.|++|.+...
T Consensus 476 ~~~~~~~~~~~~~~~~~--------~~~~~G~~aG~~t~tp~l~~a 513 (552)
T PRK03818 476 VPLLIVGILARMLAKMN--------YLTLCGMLAGSMTDPPALAFA 513 (552)
T ss_pred HHHHHHHHHHHHHHcCC--------HHHHHHHHhccCCCcHHHHHH
Confidence 88888888875554432 223444 45577888877655
No 114
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=80.33 E-value=10 Score=45.58 Aligned_cols=124 Identities=17% Similarity=0.167 Sum_probs=79.7
Q ss_pred CCCceeEEEeccCCchHHHHHHHHhhCCCCCCCceEEEEEEeeecCCCccccccccccCCCCCCCcchHHHHHHHHhhhh
Q 003798 461 DTELRLVVCVHEEESVAGLINLLEVSCPTVDSPFSIYSLHLIELIGRGIPLLVDYENEEHSPEYTNDDAIHNALKLYSET 540 (794)
Q Consensus 461 ~~elriLv~v~~~~~~~~li~l~~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~ 540 (794)
....||+||+........+++-+..++..-+ ...+++|+.. +++... ...+.+++...++--++.
T Consensus 246 ~~~e~ilvcI~~~~~~e~liR~a~RlA~~~~--a~~~av~v~~-~~~~~~------------~~~~~~~l~~~~~Lae~l 310 (890)
T COG2205 246 AARERILVCISGSPGSEKLIRRAARLASRLH--AKWTAVYVET-PELHRL------------SEKEARRLHENLRLAEEL 310 (890)
T ss_pred cccceEEEEECCCCchHHHHHHHHHHHHHhC--CCeEEEEEec-cccccc------------cHHHHHHHHHHHHHHHHh
Confidence 4457999999999999999988888876655 4567888654 221110 112234555454443332
Q ss_pred cCceEEEEeEEeccCCChhHHHHHHHHhcCCcEEEecCCCCCCCCCCCccccccc-hhHHHHHhhccCCC-ceEE
Q 003798 541 RGELKFNAFTALAPMRSMYQNICELALDNKATLIILPFHKEYPNNLEGTQILRRG-VQSVNIKVLSHAPC-SVGV 613 (794)
Q Consensus 541 ~~~v~v~~~~~vs~~~~m~~dI~~~A~~~~a~lIilp~h~~~~~d~~g~~~~~~~-~~~~n~~vl~~ApC-sVgI 613 (794)
+-.+ .+..+ .++.+.|.+.|+++++.-|++|-+++.+- ... .+++.+++++++|- +|-|
T Consensus 311 --Gae~--~~l~~--~dv~~~i~~ya~~~~~TkiViG~~~~~rw--------~~~~~~~l~~~L~~~~~~idv~i 371 (890)
T COG2205 311 --GAEI--VTLYG--GDVAKAIARYAREHNATKIVIGRSRRSRW--------RRLFKGSLADRLAREAPGIDVHI 371 (890)
T ss_pred --CCeE--EEEeC--CcHHHHHHHHHHHcCCeeEEeCCCcchHH--------HHHhcccHHHHHHhcCCCceEEE
Confidence 2222 22233 59999999999999999999998765210 011 36788999998864 4433
No 115
>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
Probab=80.25 E-value=8.3 Score=43.91 Aligned_cols=123 Identities=17% Similarity=0.178 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHHHHHhchhhhHHHHHHHhhcC-CC-CCchhHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccc
Q 003798 277 VGILLGVLVMGFLTDMFGMAIANGPLWLGLVIP-DG-PPLGATLVERTETLIMEIFMPFAFAVVGMYTDVYAMFEFGWSG 354 (794)
Q Consensus 277 ~~il~~~l~~~~~ae~~G~~~~lgaflaGl~i~-~~-~~~~~~l~~kl~~~~~~~~~PlfF~~~G~~~dl~~l~~~~~~~ 354 (794)
.+++.+...++.+++.+..+.+.-..+.|++.. .. .+......-.-|.+ ..+++|.-....|+++|...+. +.
T Consensus 12 ~lil~l~~~~~~~~~~l~~~~i~~~ll~g~i~g~~~l~~~~~~~~~~~el~-~~l~l~ilLf~~g~~l~~~~l~----~~ 86 (429)
T COG0025 12 LLILLLGLLVSVLAGRLLLPEIPLLLLLGLLGGPPGLNLISPDLELDPELF-LVLFLAILLFAGGLELDLRELR----RV 86 (429)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhhhccccccccCChHHH-HHHHHHHHHHHhHhcCCHHHHH----Hh
Confidence 334444555555555555555555555554443 11 11111111112222 2666777777789999999886 34
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhc--CCChHHHHHHHHHHHhHHHHHHHH
Q 003798 355 LSPLFGMIVTGYISKLLGTLIPSLLC--QMPFRDSLTLSLMMSLRGQVELLL 404 (794)
Q Consensus 355 ~~~~~~i~~~~~l~K~~~~~l~~~~~--~~~~~e~~~lgl~m~~kG~~~l~~ 404 (794)
|..+..+.....+...++.....++. ++|+..++.+|..+++-.-+.+.-
T Consensus 87 ~~~I~~La~~~v~it~~~~g~~~~~l~~~i~~~~a~l~gAilspTDPv~v~~ 138 (429)
T COG0025 87 WRSILVLALPLVLITALGIGLLAHWLLPGIPLAAAFLLGAILSPTDPVAVSP 138 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHhHHhcCCCchhhHH
Confidence 44444444445555555555555555 889999999999888877665543
No 116
>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=80.19 E-value=9.8 Score=40.30 Aligned_cols=130 Identities=19% Similarity=0.215 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCCCCC-c--hhHHHHHHHHHHHHHHHHHHHHHhcccccccccccccc
Q 003798 276 IVGILLGVLVMGFLTDMFGMAIANGPLWLGLVIPDGPP-L--GATLVERTETLIMEIFMPFAFAVVGMYTDVYAMFEFGW 352 (794)
Q Consensus 276 ~~~il~~~l~~~~~ae~~G~~~~lgaflaGl~i~~~~~-~--~~~l~~kl~~~~~~~~~PlfF~~~G~~~dl~~l~~~~~ 352 (794)
+...+.++|+.+.+++.+.+++.+|-.++|.+.....| + .+.+...+..+ =..+....+|+++.+.++.. .
T Consensus 11 iv~gl~lAFl~G~lA~rlrlsPLVGyL~AGv~~gpftpGFvad~~La~~LAel----GViLLmFgvGLhfslkdLLa--v 84 (408)
T COG4651 11 IVGGLVLAFLLGALANRLRLSPLVGYLLAGVLAGPFTPGFVADQTLAPELAEL----GVILLMFGVGLHFSLKDLLA--V 84 (408)
T ss_pred HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHhcCCCCCCcccchhHHHHHHHh----hHHHHHHhcchheeHHHHhh--H
Confidence 44556788888999999999999999999999864333 2 34555555554 23344557799998877652 2
Q ss_pred cchhh--HHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhHHHHHHHHHHhhhhccccCCc
Q 003798 353 SGLSP--LFGMIVTGYISKLLGTLIPSLLCQMPFRDSLTLSLMMSLRGQVELLLYIHWIDKLIIGVP 417 (794)
Q Consensus 353 ~~~~~--~~~i~~~~~l~K~~~~~l~~~~~~~~~~e~~~lgl~m~~kG~~~l~~~~~~~~~~ii~~~ 417 (794)
+.|.. ++.=+.++. . -.+-.++..|+++...+..|+.++.-..+-+ .....+++.++.+
T Consensus 85 k~iAipgAl~qia~at---~-lg~gL~~~lgws~~~glvfGlaLS~aSTVvl--lraLqEr~lidt~ 145 (408)
T COG4651 85 KAIAIPGALAQIALAT---L-LGMGLSSLLGWSFGTGIVFGLALSVASTVVL--LRALEERQLIDTQ 145 (408)
T ss_pred HHHhcchHHHHHHHHH---H-HHhHHHHHcCCCcccceeeeehhhhHHHHHH--HHHHHHhcccccc
Confidence 33321 111111111 1 1223455678888888888888777665433 2333445566554
No 117
>COG3329 Predicted permease [General function prediction only]
Probab=80.08 E-value=37 Score=36.07 Aligned_cols=129 Identities=11% Similarity=0.089 Sum_probs=76.4
Q ss_pred HHHHHHhc--hhhhHHHHHHHhhcCCC---CCchhHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccchhhHHHH
Q 003798 287 GFLTDMFG--MAIANGPLWLGLVIPDG---PPLGATLVERTETLIMEIFMPFAFAVVGMYTDVYAMFEFGWSGLSPLFGM 361 (794)
Q Consensus 287 ~~~ae~~G--~~~~lgaflaGl~i~~~---~~~~~~l~~kl~~~~~~~~~PlfF~~~G~~~dl~~l~~~~~~~~~~~~~i 361 (794)
-++.+..| +++.+.-|+.|++++-. -.+.+.+-+.+. -.++--.=.--|+.+.-+.+. ..+..++.-
T Consensus 6 ~fl~~f~~nL~sP~llFf~~Gmlia~~ksdl~iP~~i~~~ls----lyLL~aIG~kGGveir~snl~----a~v~~~~~~ 77 (372)
T COG3329 6 EFLMDFVGNLLSPTLLFFILGMLIAAFKSDLEIPEAIYQALS----LYLLLAIGFKGGVEIRNSNLT----AMVLPVALG 77 (372)
T ss_pred HHHHHHHhhhccchHHHHHHHHHHHHHhccccCchHHHHHHH----HHHHHHHhcccceeeecCCcc----hhHHHHHHH
Confidence 34445444 57888889999888752 112222222221 111111112234444333332 223334455
Q ss_pred HHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhHHHHHHHHHHhhhhccccCCchhHHHH
Q 003798 362 IVTGYISKLLGTLIPSLLCQMPFRDSLTLSLMMSLRGQVELLLYIHWIDKLIIGVPPFTLLV 423 (794)
Q Consensus 362 ~~~~~l~K~~~~~l~~~~~~~~~~e~~~lgl~m~~kG~~~l~~~~~~~~~~ii~~~~~~~lv 423 (794)
+.+.++.-++..++..++.|++..|+...+-..+.-..+.++.+...++..-+..+-|...+
T Consensus 78 ~aL~~li~~ia~f~l~kl~~vdtvdaaA~ag~yGsvS~~Tfaaa~t~Lee~giayeaym~A~ 139 (372)
T COG3329 78 VALGFLIVFIAYFLLRKLPKVDTVDAAATAGTYGSVSAVTFAAAVTFLEESGIAYEAYMPAM 139 (372)
T ss_pred HHHHHHHHHHHHHHHHHccccchHHHHHHHhhccchhHHHHHHHHHHHHHcCccHHHHHHHH
Confidence 55566667777888888889999999999988888888888877777776556666655433
No 118
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]. These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.
Probab=79.58 E-value=0.69 Score=51.62 Aligned_cols=113 Identities=19% Similarity=0.310 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHhchhhhHHHHHHHhhcCCCCCch--hHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccchhhH
Q 003798 281 LGVLVMGFLTDMFGMAIANGPLWLGLVIPDGPPLG--ATLVERTETLIMEIFMPFAFAVVGMYTDVYAMFEFGWSGLSPL 358 (794)
Q Consensus 281 ~~~l~~~~~ae~~G~~~~lgaflaGl~i~~~~~~~--~~l~~kl~~~~~~~~~PlfF~~~G~~~dl~~l~~~~~~~~~~~ 358 (794)
+.++....+.+.++++.++|-.++|+++... .+. +.-.+..+.+ ..+.+++.....|.++|...+. ..+...
T Consensus 6 ~~~~~~~~l~~r~~iP~~i~~i~~Gi~lg~~-~~~~~~~~~~~~~~l-~~i~l~~llF~~G~~~d~~~l~----~~~~~~ 79 (380)
T PF00999_consen 6 LLAFVAGILFRRLGIPSIIGYILVGIVLGPS-GLGLLEPDNPSFELL-AEIGLAFLLFEAGLELDIKELR----RNWRRA 79 (380)
T ss_dssp -------------------------------------------S-SS-HHHHS--SSHHHHTTGGGG-------------
T ss_pred ehHHHHHHHHHHhCCCHHHHHHHheeehhhh-hhhhccchhhHHHHH-HHHHHHHHHHHHHHhhcccccc----cccccc
Confidence 3344445578889999999999999999874 222 1012344444 6788888888999999999886 223333
Q ss_pred HHHHHHHHHHHHHH-HHHHHH---hcCCChHHHHHHHHHHHhHHH
Q 003798 359 FGMIVTGYISKLLG-TLIPSL---LCQMPFRDSLTLSLMMSLRGQ 399 (794)
Q Consensus 359 ~~i~~~~~l~K~~~-~~l~~~---~~~~~~~e~~~lgl~m~~kG~ 399 (794)
..+.+..++.-++. ++.... ..++++.+++.+|..+++-..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~l~~~~~~ts~ 124 (380)
T PF00999_consen 80 LALGLVGFLLPFILVGFLLSFFLFILGLSWAEALLLGAILSATSP 124 (380)
T ss_dssp ----------------------------------TTHHHHTT--H
T ss_pred cccccceeeehhhHHHHHHHHhhccchhhhHHHhhhHHhhhcccc
Confidence 33333333344444 444443 478899999999998775543
No 119
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=79.47 E-value=9.2 Score=38.36 Aligned_cols=50 Identities=20% Similarity=0.292 Sum_probs=39.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhHHHHHHHHHH
Q 003798 357 PLFGMIVTGYISKLLGTLIPSLLCQMPFRDSLTLSLMMSLRGQVELLLYI 406 (794)
Q Consensus 357 ~~~~i~~~~~l~K~~~~~l~~~~~~~~~~e~~~lgl~m~~kG~~~l~~~~ 406 (794)
..+.+-+..+++-++++++.+++.++|++|++.++..++=-......+..
T Consensus 57 ~~Llipl~tIlGSllgg~l~~~ll~~~~~~~lav~sG~GwYSlsg~~i~~ 106 (191)
T PF03956_consen 57 RALLIPLATILGSLLGGLLASLLLGLSLKESLAVASGFGWYSLSGVLITQ 106 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHccCcHHHhHHHHHHh
Confidence 36677778889999999999999999999999988776555544444433
No 120
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=77.69 E-value=37 Score=37.61 Aligned_cols=112 Identities=19% Similarity=0.169 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhcc--cCCChhHHHHHHHHhhCccccCCchhhhhccCCCCcHHHHHHHHHHHHHHHHHHHh
Q 003798 44 LVLFEIVFIICTTSIIRFLLKP--LKQPRVISEMIGGIIVGPSILGRNKKFAEAMLPDNSQLVVRSVGIMAFMYFMFIAG 121 (794)
Q Consensus 44 ~~l~~i~lil~~~~l~~~ll~r--l~~P~ii~~IlaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~G 121 (794)
..+..+++.+.++..+..+++. +.+|..++.+.+|+++-... +... ++.-..+..+.++++++-+++=.+=
T Consensus 222 ~~~~~i~i~~~vG~~i~~~l~~~~~~lP~fv~~lfvgiIvrni~----~~~~---~~~v~~~~v~~ig~vsL~lflamAL 294 (404)
T COG0786 222 ETLAIIAICLAVGKIINQLLKSLGLALPLFVMCLFVGVILRNIL----DLLK---KYRVFRRAVDVIGNVSLSLFLAMAL 294 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHhHH----HHhc---cccccHHHHHHHhhhHHHHHHHHHH
Confidence 3344455555566666666664 56899999999999997531 1111 0112367899999999999988887
Q ss_pred hccChhHHHhcCchhhHHHHHHHHHHHHHHHHH-HHHhhccC
Q 003798 122 IKMDFTLLKRCGRKHVYIAVTGVIIPTATSAAV-AFLTRKSM 162 (794)
Q Consensus 122 le~d~~~l~~~~~~~~~ia~~~~~~p~~l~~~~-~~~l~~~~ 162 (794)
+.+.+-++-..+-..+.+-..+.++..+..+.+ ...+++.+
T Consensus 295 mSlkLweL~~l~lpl~viL~vQ~i~m~lfa~fvtfr~mG~~Y 336 (404)
T COG0786 295 MSLKLWELADLALPLLVILAVQTIVMALFAIFVTFRLMGKNY 336 (404)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHhCcch
Confidence 888888888777777777667666665554443 34555544
No 121
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=77.53 E-value=14 Score=44.52 Aligned_cols=126 Identities=16% Similarity=0.197 Sum_probs=78.4
Q ss_pred ceEEEEEecCCccHHHHHHHHHHHhcCCCeEEEEEEeeccCCCCCchhhhhhHHHHHHHHHhhcCCCCceEEEEEEecCh
Q 003798 633 RHHFVVLFLGGADAREALAYADRMVGNLDVSLTVIRFLSFNHEGDDEMEKKLDDGLVTWFWVKNESNERVRYREVVVRNG 712 (794)
Q Consensus 633 ~~~I~v~f~GG~dDreAL~~A~rma~~~~v~ltvl~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~v~y~e~~v~~~ 712 (794)
..||+|-..|++...-.++.|.|||+.-+...|++++..++.....+.+++.-++.++ +.++.... -+++ .+
T Consensus 248 ~e~ilvcI~~~~~~e~liR~a~RlA~~~~a~~~av~v~~~~~~~~~~~~~~~l~~~~~-Lae~lGae------~~~l-~~ 319 (890)
T COG2205 248 RERILVCISGSPGSEKLIRRAARLASRLHAKWTAVYVETPELHRLSEKEARRLHENLR-LAEELGAE------IVTL-YG 319 (890)
T ss_pred cceEEEEECCCCchHHHHHHHHHHHHHhCCCeEEEEEeccccccccHHHHHHHHHHHH-HHHHhCCe------EEEE-eC
Confidence 3699999999999999999999999999999999999876543332233333232222 22222211 1233 33
Q ss_pred HHHHHHHHhhhccCcccEEEEecccCCCCccccccCCCCCCCccchhhhhhhccCCCCceeEEEEE
Q 003798 713 AETVASIQAVNDEAYCDLWIVGRYQGINGKLLEGLEAWSEDNELGVIGDYVASIDFGSTASVLVMQ 778 (794)
Q Consensus 713 ~~~~~~i~~~~~~~~~DL~iVGr~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~~~SvLvvq 778 (794)
.++..+|-+-++.....-+|+|++++. -|.+.-. |.+.|-|+..- ....|-+|-
T Consensus 320 ~dv~~~i~~ya~~~~~TkiViG~~~~~---------rw~~~~~-~~l~~~L~~~~--~~idv~ii~ 373 (890)
T COG2205 320 GDVAKAIARYAREHNATKIVIGRSRRS---------RWRRLFK-GSLADRLAREA--PGIDVHIVA 373 (890)
T ss_pred CcHHHHHHHHHHHcCCeeEEeCCCcch---------HHHHHhc-ccHHHHHHhcC--CCceEEEee
Confidence 456666655544411458999998764 3543322 78888888553 333444443
No 122
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=77.53 E-value=21 Score=39.83 Aligned_cols=109 Identities=21% Similarity=0.205 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHHHHhhc--ccCCChhHHHHHHHHhhCccccCCchhhhhccCCCCcHHHHHHHHHHHHHHHHHHHhhcc
Q 003798 47 FEIVFIICTTSIIRFLLK--PLKQPRVISEMIGGIIVGPSILGRNKKFAEAMLPDNSQLVVRSVGIMAFMYFMFIAGIKM 124 (794)
Q Consensus 47 ~~i~lil~~~~l~~~ll~--rl~~P~ii~~IlaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~ 124 (794)
..+.+...++..+...++ .+.+|..++-+++|+++.... ..... ..-+.+..+.++++.+-+++..+=..+
T Consensus 224 ~~i~i~~~~G~~i~~~l~~~~~~lP~f~~ami~g~ivrn~~-~~~~~------~~id~~~i~~I~~~sL~~fl~~almsl 296 (368)
T PF03616_consen 224 ALILIAIGLGYIISALLKKIGLTLPLFVGAMIVGIIVRNIL-DKTGK------YKIDRKTIDRISGISLDLFLAMALMSL 296 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHcCcCCchHHHHHHHHHHHHHHH-HHhCc------ccCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334444455555555555 367899999999999997532 11110 012367899999999999998888899
Q ss_pred ChhHHHhcCchhhHHHHHHHHHHHHHHHHH-HHHhhccC
Q 003798 125 DFTLLKRCGRKHVYIAVTGVIIPTATSAAV-AFLTRKSM 162 (794)
Q Consensus 125 d~~~l~~~~~~~~~ia~~~~~~p~~l~~~~-~~~l~~~~ 162 (794)
++..+.+..-..+.+-+.+.++..+....+ ..++++.+
T Consensus 297 ~l~~l~~~a~Plliil~~q~i~~~~f~~fv~fr~~gkdy 335 (368)
T PF03616_consen 297 KLWVLADYALPLLIILAVQTILMVLFAYFVTFRVMGKDY 335 (368)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCh
Confidence 999999988888877777777766655443 34555443
No 123
>COG5505 Predicted integral membrane protein [Function unknown]
Probab=75.89 E-value=1.2e+02 Score=32.55 Aligned_cols=91 Identities=12% Similarity=0.082 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHhcccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhHHHHHHHHHH
Q 003798 327 MEIFMPFAFAVVGMYTDVYAMFEFGWSGLSPLFGMIVTGYISKLLGTLIPSLLCQMPFRDSLTLSLMMSLRGQVELLLYI 406 (794)
Q Consensus 327 ~~~~~PlfF~~~G~~~dl~~l~~~~~~~~~~~~~i~~~~~l~K~~~~~l~~~~~~~~~~e~~~lgl~m~~kG~~~l~~~~ 406 (794)
..+++=.|++.++...|+..+. ..+.+ ++..+...+...+..+..++.++.+..+- .++.+-|.-|-.+.-...
T Consensus 275 gtv~lY~~v~vias~Ad~~~i~---taP~~--i~~gf~il~~h~~v~f~~~KlF~~dL~~i-~~AslAniGG~~sAp~~A 348 (384)
T COG5505 275 GTVLLYLFVVVIASPADLRLIV---TAPLI--ILFGFIILISHLAVSFAAGKLFRVDLEEI-LLASLANIGGPTSAPAMA 348 (384)
T ss_pred hHHHHHHHHHHhccchhHHHHH---hhhHH--HHHHHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHhccCCccchhHHH
Confidence 4566677899999999998886 33333 23333344556667778889998887654 444546777888877777
Q ss_pred hhhhccccCCchhHHHHHHHHH
Q 003798 407 HWIDKLIIGVPPFTLLVLSTVV 428 (794)
Q Consensus 407 ~~~~~~ii~~~~~~~lv~~~ll 428 (794)
.++++..+ ...++|.++
T Consensus 349 ~A~nr~lv-----~~gvlmg~l 365 (384)
T COG5505 349 IAKNRELV-----APGVLMGTL 365 (384)
T ss_pred hhcCchhc-----chHHHHHHH
Confidence 77665444 344445444
No 124
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=75.71 E-value=10 Score=36.71 Aligned_cols=84 Identities=15% Similarity=0.090 Sum_probs=46.3
Q ss_pred CccHHHHHHHHHHHhcCCCeEEEEEEeeccCCCCCchhhhhhHHHHHHHHHhhcCCCCceEEEEEEec---ChHHHHHHH
Q 003798 643 GADAREALAYADRMVGNLDVSLTVIRFLSFNHEGDDEMEKKLDDGLVTWFWVKNESNERVRYREVVVR---NGAETVASI 719 (794)
Q Consensus 643 G~dDreAL~~A~rma~~~~v~ltvl~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~v~y~e~~v~---~~~~~~~~i 719 (794)
.+.|+|+|+.|+++++..+.+++++-+-+.. + .++.+++...++ +-+++...+---. +.+....++
T Consensus 14 ~~~~~e~l~~A~~La~~~g~~v~av~~G~~~---------~-~~~~l~~~l~~~-G~d~v~~~~~~~~~~~~~~~~a~~l 82 (164)
T PF01012_consen 14 NPVSLEALEAARRLAEALGGEVTAVVLGPAE---------E-AAEALRKALAKY-GADKVYHIDDPALAEYDPEAYADAL 82 (164)
T ss_dssp -HHHHHHHHHHHHHHHCTTSEEEEEEEETCC---------C-HHHHHHHHHHST-TESEEEEEE-GGGTTC-HHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhcCCeEEEEEEecch---------h-hHHHHhhhhhhc-CCcEEEEecCccccccCHHHHHHHH
Confidence 5799999999999999888899888765211 1 222333332222 2234433221111 223344455
Q ss_pred HhhhccCcccEEEEeccc
Q 003798 720 QAVNDEAYCDLWIVGRYQ 737 (794)
Q Consensus 720 ~~~~~~~~~DL~iVGr~~ 737 (794)
.+..++..+|+++.|.+.
T Consensus 83 ~~~~~~~~~~lVl~~~t~ 100 (164)
T PF01012_consen 83 AELIKEEGPDLVLFGSTS 100 (164)
T ss_dssp HHHHHHHT-SEEEEESSH
T ss_pred HHHHHhcCCCEEEEcCcC
Confidence 444322128999999974
No 125
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=75.39 E-value=6.9 Score=41.15 Aligned_cols=111 Identities=7% Similarity=-0.070 Sum_probs=60.5
Q ss_pred ecCCccHHHHHHHHHHHhcCCC-eEEEEEEeeccCCCCCchhhhhhHHHHHHHHHhhcCCCCceEEEE-EEe--cChHHH
Q 003798 640 FLGGADAREALAYADRMVGNLD-VSLTVIRFLSFNHEGDDEMEKKLDDGLVTWFWVKNESNERVRYRE-VVV--RNGAET 715 (794)
Q Consensus 640 f~GG~dDreAL~~A~rma~~~~-v~ltvl~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~v~y~e-~~v--~~~~~~ 715 (794)
+.=.|.|+-|++.|.|+.++.+ .++|++.+=+++. .+++.+++--.. +-++....+ ... .|...|
T Consensus 32 ~~iN~~D~~AlE~Alrlke~~~g~~Vtvvs~Gp~~a---------~~~~~lr~aLAm--GaD~avli~d~~~~g~D~~~t 100 (256)
T PRK03359 32 AKISQYDLNAIEAACQLKQQAAEAQVTALSVGGKAL---------TNAKGRKDVLSR--GPDELIVVIDDQFEQALPQQT 100 (256)
T ss_pred cccChhhHHHHHHHHHHhhhcCCCEEEEEEECCcch---------hhHHHHHHHHHc--CCCEEEEEecCcccCcCHHHH
Confidence 3338999999999999998754 8999999865431 122345443333 223332222 111 133334
Q ss_pred HHHHHhhhcc-CcccEEEEecccC-CCCcc-ccccCCCCCCCccchhhhh
Q 003798 716 VASIQAVNDE-AYCDLWIVGRYQG-INGKL-LEGLEAWSEDNELGVIGDY 762 (794)
Q Consensus 716 ~~~i~~~~~~-~~~DL~iVGr~~~-~~~~~-~~gl~~w~e~~eLG~igd~ 762 (794)
..+|.+.-++ + |||++-|+... ..+-+ -.-+.+|-..|-+..+-++
T Consensus 101 A~~La~ai~~~~-~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt~v~~l 149 (256)
T PRK03359 101 ASALAAAAQKAG-FDLILCGDGSSDLYAQQVGLLVGEILNIPAINGVSKI 149 (256)
T ss_pred HHHHHHHHHHhC-CCEEEEcCccccCCCCcHHHHHHHHhCCCceeeEEEE
Confidence 4443322111 2 99999999752 22222 1223345555666665554
No 126
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
Probab=75.10 E-value=7.6 Score=32.99 Aligned_cols=34 Identities=21% Similarity=0.304 Sum_probs=27.8
Q ss_pred EEEEecCCccHHHHHHHHHHHhcCCCeEEEEEEee
Q 003798 636 FVVLFLGGADAREALAYADRMVGNLDVSLTVIRFL 670 (794)
Q Consensus 636 I~v~f~GG~dDreAL~~A~rma~~~~v~ltvl~~~ 670 (794)
|++++.||+|+..++.+|.+.+ ..+.+++++++.
T Consensus 1 ilv~~sgg~dS~~~l~~~~~~~-~~~~~~~~~~~~ 34 (86)
T cd01984 1 ILVALSGGLDSSVLLHLAKRLK-SGGPEVVALVVV 34 (86)
T ss_pred CEEEeeCCHHHHHHHHHHHHHH-hcCCCEEEEEeH
Confidence 5789999999999999999987 345677777753
No 127
>PRK09903 putative transporter YfdV; Provisional
Probab=74.56 E-value=51 Score=35.73 Aligned_cols=109 Identities=14% Similarity=0.138 Sum_probs=61.6
Q ss_pred cCCChhHHHHHHHHhhCccccCCchhhhhccCCCCcHHHHHHHHHHHHHHHHHHHhhccChhHHHhcCchhhHHHHHHH-
Q 003798 66 LKQPRVISEMIGGIIVGPSILGRNKKFAEAMLPDNSQLVVRSVGIMAFMYFMFIAGIKMDFTLLKRCGRKHVYIAVTGV- 144 (794)
Q Consensus 66 l~~P~ii~~IlaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~- 144 (794)
++-|.+++.++ |+++.- +|.. .|.--.+.++.+++...-+-||..|..+....++.. ++.+...+.-.
T Consensus 171 ~~nP~iia~~~-gl~~~l--~~i~-------lP~~i~~~l~~lg~~~~PlaL~~iG~~L~~~~~~~~-~~~~~~~~~Kli 239 (314)
T PRK09903 171 AKEPVVWAPVL-ATILVL--VGVK-------IPAAWDPTFNLIAKANSGVAVFAAGLTLAAHKFEFS-AEIAYNTFLKLI 239 (314)
T ss_pred HhchHHHHHHH-HHHHHH--cCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc-HHHHHHHHHHHH
Confidence 44577777554 555542 3321 233347889999999999999999999876655433 33333333333
Q ss_pred HHHHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHhhccHHHHHHHHHhc
Q 003798 145 IIPTATSAAVAFLTRKSMDPELAKVSSIGAITTSLAVTSFPVLNPILKDL 194 (794)
Q Consensus 145 ~~p~~l~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el 194 (794)
+.|++. .+...+++. + ....-....++....++.+.++.+.
T Consensus 240 ~~P~i~-~~~~~~~~l--~------~~~~~v~vl~aa~P~a~~~~i~A~~ 280 (314)
T PRK09903 240 LMPLAL-LLVGMACHL--N------SEHLQMMVLAGALPPAFSGIIIASR 280 (314)
T ss_pred HHHHHH-HHHHHHcCC--C------cHHHHHHHHHHcccHHHHHHHHHHH
Confidence 355543 333333321 1 2233445555555556666666553
No 128
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
Probab=73.76 E-value=23 Score=35.12 Aligned_cols=37 Identities=19% Similarity=0.250 Sum_probs=32.2
Q ss_pred EEEEEecCCccHHHHHHHHHHHhcCCCeEEEEEEeec
Q 003798 635 HFVVLFLGGADAREALAYADRMVGNLDVSLTVIRFLS 671 (794)
Q Consensus 635 ~I~v~f~GG~dDreAL~~A~rma~~~~v~ltvl~~~~ 671 (794)
||++.+.||.|.--++.++.+.++..+.++.++++..
T Consensus 1 ~v~va~SGG~DS~~ll~ll~~~~~~~~~~v~~v~vd~ 37 (189)
T TIGR02432 1 RILVAVSGGVDSMALLHLLLKLQPKLKIRLIAAHVDH 37 (189)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 5899999999999999999998877667788888853
No 129
>PRK12342 hypothetical protein; Provisional
Probab=73.00 E-value=8.9 Score=40.27 Aligned_cols=33 Identities=6% Similarity=-0.154 Sum_probs=27.0
Q ss_pred EecCCccHHHHHHHHHHHhcCCCeEEEEEEeecc
Q 003798 639 LFLGGADAREALAYADRMVGNLDVSLTVIRFLSF 672 (794)
Q Consensus 639 ~f~GG~dDreAL~~A~rma~~~~v~ltvl~~~~~ 672 (794)
.+.=+|.|+-|++.|.|+.+ .+.++|++.+=++
T Consensus 30 ~~~iNp~D~~AlE~AlrLk~-~g~~Vtvls~Gp~ 62 (254)
T PRK12342 30 EAKISQFDLNAIEAASQLAT-DGDEIAALTVGGS 62 (254)
T ss_pred CccCChhhHHHHHHHHHHhh-cCCEEEEEEeCCC
Confidence 33448999999999999995 4789999998654
No 130
>COG2431 Predicted membrane protein [Function unknown]
Probab=72.82 E-value=48 Score=34.85 Aligned_cols=77 Identities=13% Similarity=0.230 Sum_probs=49.5
Q ss_pred hhHHHHHHHHhhCccccCCchhhhhccCCCCcHHHHHHHHHHHHHHHHHHHhhccC---hhHHH-hcCchhhHHHHHHHH
Q 003798 70 RVISEMIGGIIVGPSILGRNKKFAEAMLPDNSQLVVRSVGIMAFMYFMFIAGIKMD---FTLLK-RCGRKHVYIAVTGVI 145 (794)
Q Consensus 70 ~ii~~IlaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~d---~~~l~-~~~~~~~~ia~~~~~ 145 (794)
++.+..+.|+++|-..-... ...+...+..+.+++|.+|.++. ....+ .-.|+....++...+
T Consensus 108 k~~~~vl~g~~~G~l~~~~~-------------~~~~~a~~~~L~~LlF~iGi~l~n~g~~~~~~~Lnk~gl~l~~i~il 174 (297)
T COG2431 108 KLLGVVLLGLALGLLTGSFL-------------NFPENASEYLLYLLLFLIGIQLGNSGISLRQVLLNKRGLILAFITLL 174 (297)
T ss_pred HHHHHHHHHHHHHHHhcccc-------------cCchhHHHHHHHHHHHHHHHHhccccchhhhHHhccchHHHHHHHHH
Confidence 56677888888885432221 11455778899999999999987 22111 223777777777766
Q ss_pred HHHHHHHHHHHHhh
Q 003798 146 IPTATSAAVAFLTR 159 (794)
Q Consensus 146 ~p~~l~~~~~~~l~ 159 (794)
-..+.|...+.++.
T Consensus 175 ssliGG~iaa~~l~ 188 (297)
T COG2431 175 SSLIGGLIAAFLLD 188 (297)
T ss_pred HHHHHHHHHHHHHh
Confidence 66666666555554
No 131
>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]
Probab=72.53 E-value=43 Score=37.60 Aligned_cols=111 Identities=12% Similarity=0.123 Sum_probs=67.6
Q ss_pred HHHHHhchhhhHHHHHHHhhcCCCCCch-hHH-HHHHHHHHHHHHHHHHHHHhcccccccccccccccchhhHHHHHHHH
Q 003798 288 FLTDMFGMAIANGPLWLGLVIPDGPPLG-ATL-VERTETLIMEIFMPFAFAVVGMYTDVYAMFEFGWSGLSPLFGMIVTG 365 (794)
Q Consensus 288 ~~ae~~G~~~~lgaflaGl~i~~~~~~~-~~l-~~kl~~~~~~~~~PlfF~~~G~~~dl~~l~~~~~~~~~~~~~i~~~~ 365 (794)
-++..+|....+=-...|++...++ .+ -+. ...+..++..+.+.+...-.|++++++.+. ...|....+..+..
T Consensus 24 ~~ssrfGvP~LllFl~iGm~aG~dG-lg~I~fdNy~~Ay~vg~lALaiILfdgG~~T~lss~r---~a~~palsLATlGV 99 (574)
T COG3263 24 LISSRFGVPLLLLFLSIGMLAGVDG-LGGIEFDNYPFAYMVGNLALAIILFDGGFGTQLSSFR---VAAGPALSLATLGV 99 (574)
T ss_pred HHHHHcCchHHHHHHHHHHHcCCCc-ccccccCccHHHHHHHHHHHHHHhhcCccCCcHHHHH---HHhhhhHHHHHHHH
Confidence 3444555555555555566655421 11 000 024445556666776667789999988876 34444344444444
Q ss_pred HHHHHHHHHHHHHhcCCChHHHHHHHHHHHhHHHHHH
Q 003798 366 YISKLLGTLIPSLLCQMPFRDSLTLSLMMSLRGQVEL 402 (794)
Q Consensus 366 ~l~K~~~~~l~~~~~~~~~~e~~~lgl~m~~kG~~~l 402 (794)
++.-.+....+.+.++++|-|++.+|.+.+..-..++
T Consensus 100 l~Ts~Ltg~aA~~ll~l~wle~~LiGAiVgSTDAAAV 136 (574)
T COG3263 100 LITSGLTGVAAAYLLNLDWLEGLLIGAIVGSTDAAAV 136 (574)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHhhccccHHHH
Confidence 4555666667788899999999999998766544443
No 132
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
Probab=71.52 E-value=4.8 Score=34.24 Aligned_cols=47 Identities=21% Similarity=0.186 Sum_probs=37.0
Q ss_pred ChhHHHHHHHHhcCCcEEEecCCCCCCCCCCCccccccc-hh-HHHHHhhccCCCce
Q 003798 557 SMYQNICELALDNKATLIILPFHKEYPNNLEGTQILRRG-VQ-SVNIKVLSHAPCSV 611 (794)
Q Consensus 557 ~m~~dI~~~A~~~~a~lIilp~h~~~~~d~~g~~~~~~~-~~-~~n~~vl~~ApCsV 611 (794)
.+++.+.+.|++.++|.|+.|.|.... .++. .+ +...++.++++|+|
T Consensus 35 ~~~~~~~~~a~~~~~~~Iv~G~~~~d~--------~~~~~~~~~~~~~~~~~~~~~v 83 (86)
T cd01984 35 AFVRILKRLAAEEGADVIILGHNADDV--------AGRRLGASANVLVVIKGAGIPV 83 (86)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCchhh--------hhhccCchhhhhhcccccCCce
Confidence 789999999999999999999995532 1222 33 56788899999986
No 133
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=71.49 E-value=35 Score=37.19 Aligned_cols=100 Identities=15% Similarity=0.098 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHHHhhcccCCCh--hHHHHHHHHhhCccccCCchhhhhccCCCCcHHHHHHHHHHHHHHHHHHHhhcc
Q 003798 47 FEIVFIICTTSIIRFLLKPLKQPR--VISEMIGGIIVGPSILGRNKKFAEAMLPDNSQLVVRSVGIMAFMYFMFIAGIKM 124 (794)
Q Consensus 47 ~~i~lil~~~~l~~~ll~rl~~P~--ii~~IlaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~ 124 (794)
.++.+++.++...+++++|+|+|. ++|-++++.++.-...... -+| ..+ ..++.+++=-.+|.++
T Consensus 155 ~~l~~l~~~~~~g~~l~~~l~iPa~~llGpml~~a~~~~~~~~~~------~~P----~~l---~~~aqv~iG~~iG~~f 221 (318)
T PF05145_consen 155 LWLALLALAALAGGLLARRLRIPAPWLLGPMLVSAILNLFGGPSF------SLP----PWL---VNAAQVLIGASIGSRF 221 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhCCCC------CCC----HHH---HHHHHHHHHHHHHccc
Confidence 345556667788899999999864 4555555555543311111 112 344 4444555556899999
Q ss_pred ChhHHHhcCchhhHHHHHHHHHHHHHHHHHHHHhhc
Q 003798 125 DFTLLKRCGRKHVYIAVTGVIIPTATSAAVAFLTRK 160 (794)
Q Consensus 125 d~~~l~~~~~~~~~ia~~~~~~p~~l~~~~~~~l~~ 160 (794)
+...+++.. +.+..++...+.-+.++.+.++.+..
T Consensus 222 ~~~~l~~~~-~~~~~~l~~~~~~l~~~~~~a~~l~~ 256 (318)
T PF05145_consen 222 TRETLRELR-RLLPPALLSTLLLLALCALFAWLLSR 256 (318)
T ss_pred cHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998887655 44444555555555555555555544
No 134
>TIGR01109 Na_pump_decarbB sodium ion-translocating decarboxylase, beta subunit. This model describes the beta subunits of sodium pump decarboxylases that include oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, and glutaconyl-CoA decarboxylase. Beta and gammma-subunits are integral membrane proteins, while alpha is membrane bound. Catalytically, the energy released by the decarboxylation reaction is coupled to the extrusion of Na+ ions across the membrane.
Probab=71.22 E-value=16 Score=39.17 Aligned_cols=174 Identities=14% Similarity=0.154 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhchhh-hHHHHHHHhhcCCCCCchh------HHHH--HHHHHHHHHHHHHHHHHhcccccccccc
Q 003798 278 GILLGVLVMGFLTDMFGMAI-ANGPLWLGLVIPDGPPLGA------TLVE--RTETLIMEIFMPFAFAVVGMYTDVYAMF 348 (794)
Q Consensus 278 ~il~~~l~~~~~ae~~G~~~-~lgaflaGl~i~~~~~~~~------~l~~--kl~~~~~~~~~PlfF~~~G~~~dl~~l~ 348 (794)
+.+++.+..-|++-.-++++ ++=+.-+|.++.|-|.-+- .+.+ --..+.++++=|+-|.-+|..+|++-+.
T Consensus 4 vMi~ig~~LiYLai~k~~EPlLLiPigfG~il~NiP~~~~g~~~~gg~l~~~~~~gi~~~l~P~LIFlGIGAmtDFgpll 83 (354)
T TIGR01109 4 IMLLVSLLLLYLAIAKKFEPLLLIPIGFGGILSNIPEAGLGLTAEGGILALFYKVGIGSGIAPLLIFMGIGALTDFGPLL 83 (354)
T ss_pred ehHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCccccccccCCchHHHHHHHHHhcchHHHHHHHhccHHhhhHHHH
Q ss_pred cccccchhhHHHHHHHHHHHHHHHHHHHHHhcCC------ChHHHHHHHHHHHhHHHHHHHHHHhhhhccccCCchhHHH
Q 003798 349 EFGWSGLSPLFGMIVTGYISKLLGTLIPSLLCQM------PFRDSLTLSLMMSLRGQVELLLYIHWIDKLIIGVPPFTLL 422 (794)
Q Consensus 349 ~~~~~~~~~~~~i~~~~~l~K~~~~~l~~~~~~~------~~~e~~~lgl~m~~kG~~~l~~~~~~~~~~ii~~~~~~~l 422 (794)
...+ ..++-..+-++-+. +++.+...|+ +.+|+..+|.+=+.-|-.++.+.+..... .+.+-...+-
T Consensus 84 ---anP~--~~llGaaAQ~GiF~-t~~~A~~lGf~~~~~~~~~eAAsIgIIGgADGPt~If~s~~lap~-Llg~IaVAAY 156 (354)
T TIGR01109 84 ---ANPR--TLLLGAAAQFGIFA-TVFGALTLNFFGIISFSLPQAAAIGIIGGADGPTAIYLSGKLAPE-LLAAIAVAAY 156 (354)
T ss_pred ---hChH--HHHHHHHHHhhHHH-HHHHHHHhCCCcccccChhhceeeeeeccCCCchhhhhHhhhhhH-HHHHHHHHHH
Q ss_pred HHHHHHHHHhHHHHHHhh-cCCCCcccccccccccCCC
Q 003798 423 VLSTVVITGIAGPLISFL-YDPTRPYMVNKRRTIQHHP 459 (794)
Q Consensus 423 v~~~ll~t~i~~plv~~l-~~~~~~~~~~~~r~i~~~~ 459 (794)
.-|+++ =.+.||++|.+ -|.+|+..-++.|++.+.+
T Consensus 157 sYMaLv-PiiqPpimklLttkkeR~I~M~~~r~Vsk~e 193 (354)
T TIGR01109 157 SYMALV-PIIQPPIMKALTSEKERKIRMKQLRTVSKRE 193 (354)
T ss_pred HHHHHH-hcccchHHHhhcChHHhccccCCCCCcCccc
No 135
>PRK15475 oxaloacetate decarboxylase subunit beta; Provisional
Probab=69.36 E-value=7.6 Score=42.14 Aligned_cols=112 Identities=14% Similarity=0.139 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHhcccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHh------cCCChHHHHHHHHHHHhHH
Q 003798 325 LIMEIFMPFAFAVVGMYTDVYAMFEFGWSGLSPLFGMIVTGYISKLLGTLIPSLL------CQMPFRDSLTLSLMMSLRG 398 (794)
Q Consensus 325 ~~~~~~~PlfF~~~G~~~dl~~l~~~~~~~~~~~~~i~~~~~l~K~~~~~l~~~~------~~~~~~e~~~lgl~m~~kG 398 (794)
+.++++=|+.|.-+|..+|++-+. .++... ++-..+-++-+. +++.+.. .|++.+|+..+|.+=+.-|
T Consensus 131 i~~gi~P~LIF~GIGAMtDFgpLl-anP~~~----llGaAAQ~GIF~-t~~~A~~l~~~g~~GF~~~eAAsIgIIGGADG 204 (433)
T PRK15475 131 IGSGVAPLVIFMGVGAMTDFGPLL-ANPRTL----LLGAAAQFGIFA-TVLGALTLNYFGLISFTLPQAAAIGIIGGADG 204 (433)
T ss_pred HhcchHHHHHHHhccHHhcchHHh-hCHHHH----HHHHHHHhhHHH-HHHHHHHHhhcccCCCChhhchheeeeccCCC
Confidence 457888899999999999998876 223222 222223333332 2233332 3799999999999877778
Q ss_pred HHHHHHHHhhhhccccCCchhHHHHHHHHHHHHhHHHHHHhhcCCC
Q 003798 399 QVELLLYIHWIDKLIIGVPPFTLLVLSTVVITGIAGPLISFLYDPT 444 (794)
Q Consensus 399 ~~~l~~~~~~~~~~ii~~~~~~~lv~~~ll~t~i~~plv~~l~~~~ 444 (794)
-.++.+.+... -+.+.+-...+---|+++ -.+-||++|.+-.++
T Consensus 205 PTsIfvsskLA-P~Llg~IaVAAYSYMaLV-PiIQPpimklLTTkk 248 (433)
T PRK15475 205 PTAIYLSGKLA-PELLGAIAVAAYSYMALV-PLIQPPIMKALTTET 248 (433)
T ss_pred chHHHhHhhhh-hHhHHHHHHHHHHHHHHH-hcccchHHHhccCHH
Confidence 87777665332 122322222233334555 677899999876443
No 136
>TIGR02039 CysD sulfate adenylyltransferase, small subunit. In Escherichia coli, ATP sulfurylase is a heterodimer composed of two subunits encoded by cysD and cysN, with APS kinase encoded by cysC. These genes are located in a unidirectionally transcribed gene cluster, and have been shown to be required for the synthesis of sulfur-containing amino acids. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules.
Probab=69.14 E-value=15 Score=39.47 Aligned_cols=38 Identities=16% Similarity=0.110 Sum_probs=30.5
Q ss_pred EEEEEecCCccHHHHHHHHHHHhcCCCeEEEEEEeecc
Q 003798 635 HFVVLFLGGADAREALAYADRMVGNLDVSLTVIRFLSF 672 (794)
Q Consensus 635 ~I~v~f~GG~dDreAL~~A~rma~~~~v~ltvl~~~~~ 672 (794)
+.++.|.||+|+--.|.+|.+.-...+..+.++++-+.
T Consensus 21 ~~vv~~SGGKDS~VlLhLa~kaf~~~~~p~~vl~IDTG 58 (294)
T TIGR02039 21 RPVMLYSIGKDSSVLLHLARKAFYPGPLPFPLLHVDTG 58 (294)
T ss_pred CcEEEEecChHHHHHHHHHHHHhcccCCCeEEEEEecC
Confidence 55778999999999999999886543567788888543
No 137
>PRK10711 hypothetical protein; Provisional
Probab=69.06 E-value=1.4e+02 Score=30.82 Aligned_cols=111 Identities=5% Similarity=0.019 Sum_probs=68.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 003798 315 GATLVERTETLIMEIFMPFAFAVVGMYTDVYAMFEFGWSGLSPLFGMIVTGYISKLLGTLIPSLLCQMPFRDSLTLSLMM 394 (794)
Q Consensus 315 ~~~l~~kl~~~~~~~~~PlfF~~~G~~~dl~~l~~~~~~~~~~~~~i~~~~~l~K~~~~~l~~~~~~~~~~e~~~lgl~m 394 (794)
++-+..-+.+-+-.+..|+|= +...+. +.|..+.+-+.++.+.-++.+++.++.+|.+.. +. ..|
T Consensus 59 ~~~l~~lLgPAtVALAvPLY~-------q~~~lk----~~~~~I~~~~~vG~~v~i~s~~~l~~~lg~~~~--~~--~Sl 123 (231)
T PRK10711 59 SEVLNDLLQPAVVALAFPLYE-------QLHQIR----ARWKSIISICFIGSVVAMVTGTAVALWMGATPE--IA--ASI 123 (231)
T ss_pred cHHHHhhhhHHHHHHHHHHHH-------hHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHH--HH--HHH
Confidence 344455556656667777762 333443 345555555666777778888889999988643 22 346
Q ss_pred HhHHHHHHHHHHhhhhccccCCchhHHHHHHHHHHHHhHHHHHHhh
Q 003798 395 SLRGQVELLLYIHWIDKLIIGVPPFTLLVLSTVVITGIAGPLISFL 440 (794)
Q Consensus 395 ~~kG~~~l~~~~~~~~~~ii~~~~~~~lv~~~ll~t~i~~plv~~l 440 (794)
.+|....-+...+..+.|-+.+-.-..++++-++-..+.+++++++
T Consensus 124 ~pkSVTtPIAm~is~~iGG~~sLta~~ViitGi~Ga~~g~~llk~~ 169 (231)
T PRK10711 124 LPKSVTTPIAMAVGGSIGGIPAISAVCVIFVGILGAVFGHTLLNAM 169 (231)
T ss_pred hhhhhhHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 7999988888888877775543333444445555444445556554
No 138
>PRK15477 oxaloacetate decarboxylase subunit beta; Provisional
Probab=68.85 E-value=7.9 Score=42.03 Aligned_cols=112 Identities=13% Similarity=0.126 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHhcccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHh------cCCChHHHHHHHHHHHhHH
Q 003798 325 LIMEIFMPFAFAVVGMYTDVYAMFEFGWSGLSPLFGMIVTGYISKLLGTLIPSLL------CQMPFRDSLTLSLMMSLRG 398 (794)
Q Consensus 325 ~~~~~~~PlfF~~~G~~~dl~~l~~~~~~~~~~~~~i~~~~~l~K~~~~~l~~~~------~~~~~~e~~~lgl~m~~kG 398 (794)
+.++++=|+.|.-+|..+|++-+. .++.. +++-..+-++-+. +++.+.. .|++.+|+..+|.+=+.-|
T Consensus 131 i~~gi~P~LIF~GIGAMtDFgpLl-anP~~----~llGaAAQ~GIF~-t~~~A~~l~~~g~~GF~~~eAAsIgIIGGADG 204 (433)
T PRK15477 131 IGSGVAPLVIFMGVGAMTDFGPLL-ANPRT----LLLGAAAQFGIFA-TVLGALTLNYFGLISFTLPQAAAIGIIGGADG 204 (433)
T ss_pred HhcchHHHHHHHhccHHhcchHHh-hCHHH----HHHHHHHHhhHHH-HHHHHHHHhhcccCCCChhhchheeeeccCCC
Confidence 457888899999999999998876 22322 2222223333332 2233332 3799999999999877778
Q ss_pred HHHHHHHHhhhhccccCCchhHHHHHHHHHHHHhHHHHHHhhcCCC
Q 003798 399 QVELLLYIHWIDKLIIGVPPFTLLVLSTVVITGIAGPLISFLYDPT 444 (794)
Q Consensus 399 ~~~l~~~~~~~~~~ii~~~~~~~lv~~~ll~t~i~~plv~~l~~~~ 444 (794)
-.++.+.+... -+.+.+-...+---|+++ -.+-||++|.+-.++
T Consensus 205 PTsIfvsskLA-P~Llg~IaVAAYSYMaLV-PiIQPpimklLTTkk 248 (433)
T PRK15477 205 PTAIYLSGKLA-PELLGAIAVAAYSYMALV-PLIQPPIMKALTTEK 248 (433)
T ss_pred chHHHhHhhhh-hHhHHHHHHHHHHHHHHH-hcccchHHHhccCHH
Confidence 87777665332 122322222233334555 677899999876443
No 139
>PRK15476 oxaloacetate decarboxylase subunit beta; Provisional
Probab=68.83 E-value=7.9 Score=42.03 Aligned_cols=112 Identities=13% Similarity=0.126 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHHhcccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHh------cCCChHHHHHHHHHHHhHH
Q 003798 325 LIMEIFMPFAFAVVGMYTDVYAMFEFGWSGLSPLFGMIVTGYISKLLGTLIPSLL------CQMPFRDSLTLSLMMSLRG 398 (794)
Q Consensus 325 ~~~~~~~PlfF~~~G~~~dl~~l~~~~~~~~~~~~~i~~~~~l~K~~~~~l~~~~------~~~~~~e~~~lgl~m~~kG 398 (794)
+.++++=|+.|.-+|..+|++-+. .++.. +++-..+-++-+. +++.+.. .|++.+|+..+|.+=+.-|
T Consensus 131 i~~gi~P~LIF~GIGAMtDFgpLl-anP~~----~llGaAAQ~GIF~-t~~~A~~l~~~g~~GF~~~eAAsIgIIGGADG 204 (433)
T PRK15476 131 IGSGVAPLVIFMGVGAMTDFGPLL-ANPRT----LLLGAAAQFGIFA-TVLGALTLNYFGLISFTLPQAAAIGIIGGADG 204 (433)
T ss_pred HhcchHHHHHHHhccHHhcchHHh-hCHHH----HHHHHHHHhhHHH-HHHHHHHHhhcccCCCChhhchheeeeccCCC
Confidence 457888899999999999998876 22322 2222223333332 2233332 3799999999999877778
Q ss_pred HHHHHHHHhhhhccccCCchhHHHHHHHHHHHHhHHHHHHhhcCCC
Q 003798 399 QVELLLYIHWIDKLIIGVPPFTLLVLSTVVITGIAGPLISFLYDPT 444 (794)
Q Consensus 399 ~~~l~~~~~~~~~~ii~~~~~~~lv~~~ll~t~i~~plv~~l~~~~ 444 (794)
-.++.+.+... -+.+.+-...+---|+++ -.+-||++|.+-.++
T Consensus 205 PTsIfvsskLA-P~Llg~IaVAAYSYMaLV-PiIQPpimklLTTkk 248 (433)
T PRK15476 205 PTAIYLSGKLA-PELLGAIAVAAYSYMALV-PLIQPPIMKALTTEK 248 (433)
T ss_pred chHHHhHhhhh-hHhHHHHHHHHHHHHHHH-hcccchHHHhccCHH
Confidence 87777665332 122322222233334555 677899999876443
No 140
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=68.00 E-value=12 Score=37.05 Aligned_cols=57 Identities=14% Similarity=0.100 Sum_probs=41.9
Q ss_pred EEEEEecCCccHHHHHHHHHHHhcCCCeEEEEEEeeccCCCCCchhhhhhHHHHHHHHHhhc
Q 003798 635 HFVVLFLGGADAREALAYADRMVGNLDVSLTVIRFLSFNHEGDDEMEKKLDDGLVTWFWVKN 696 (794)
Q Consensus 635 ~I~v~f~GG~dDreAL~~A~rma~~~~v~ltvl~~~~~~~~~~~~~~~~~d~~~l~~~~~~~ 696 (794)
+|+|-+.||+|.--.|.+...+.++.+.+++++++...-. .+...+.++++++-++.
T Consensus 1 ki~va~SGG~DS~~Ll~~l~~~~~~~~~~~~~~~vdh~~~-----~~s~~~~~~v~~~~~~~ 57 (182)
T PF01171_consen 1 KILVAVSGGKDSMALLHLLKELRRRNGIKLIAVHVDHGLR-----EESDEEAEFVEEICEQL 57 (182)
T ss_dssp EEEEE--SSHHHHHHHHHHHHHHTTTTTEEEEEEEE-STS-----CCHHHHHHHHHHHHHHT
T ss_pred CEEEEEcCCHHHHHHHHHHHHHHHhcCCCeEEEEEecCCC-----cccchhHHHHHHHHHhc
Confidence 5899999999999999999999999888999999975422 12234556777776654
No 141
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=67.53 E-value=1.5e+02 Score=30.38 Aligned_cols=119 Identities=13% Similarity=0.074 Sum_probs=66.5
Q ss_pred HHHHhhcccCC----ChhHHHHHHHHhhCccccCCc-hhhhhccCCCCcHHHHHHHHHHHHHHHHHHHhhccChhHHHhc
Q 003798 58 IIRFLLKPLKQ----PRVISEMIGGIIVGPSILGRN-KKFAEAMLPDNSQLVVRSVGIMAFMYFMFIAGIKMDFTLLKRC 132 (794)
Q Consensus 58 l~~~ll~rl~~----P~ii~~IlaGiilGP~~lg~~-~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~ 132 (794)
+..++.||.+- |-+++.++...++=. +|.. +++. ++.++++.+-+- .-.-|..-+==+++.+||+
T Consensus 20 ~a~~l~~r~~~~~l~PlLv~~~~li~~L~~--~~i~Y~~Y~------~g~~~i~~lLgP--AtVAlAvPLYkq~~~ik~~ 89 (230)
T COG1346 20 AAKRLYKRTKSPFLNPLLVATVLLIAFLLL--FGISYEDYM------KGGQWINFLLGP--ATVALAVPLYKQRHLIKRH 89 (230)
T ss_pred HHHHHHHhcCCcccchHHHHHHHHHHHHHH--cCCCHHHHh------cccHHHHHHHHH--HHHHHhhHHHHHHHHHHHH
Confidence 34455666663 555555544444422 2221 2221 234455554333 3334455555678899999
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHhhccCCcchhhHHHHHHHHH-HHhhccHHHHHHHHHhcCc
Q 003798 133 GRKHVYIAVTGVIIPTATSAAVAFLTRKSMDPELAKVSSIGAITT-SLAVTSFPVLNPILKDLNL 196 (794)
Q Consensus 133 ~~~~~~ia~~~~~~p~~l~~~~~~~l~~~~~~~~~~~~~~l~lg~-~ls~Ts~~vv~~iL~el~l 196 (794)
++....-.+.+..+.++.+..++.+++... .+.... -=|+| .|+...+-+++|-
T Consensus 90 w~~I~~g~~vGs~~ai~s~~llak~~g~~~---------~~~~Sl~PkSvT-TpiAm~vs~~iGG 144 (230)
T COG1346 90 WKPILAGVLVGSVVAIISGVLLAKLFGLSP---------ELILSLLPKSVT-TPIAMEVSESIGG 144 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCH---------HHHHHhcccccc-cHHHHHHHHhcCC
Confidence 999988888888888888888888776532 111121 12444 4666666666553
No 142
>KOG0573 consensus Asparagine synthase [Amino acid transport and metabolism]
Probab=64.99 E-value=53 Score=36.90 Aligned_cols=83 Identities=19% Similarity=0.152 Sum_probs=57.8
Q ss_pred eEEEEEecCCccHHHHHHHHHHHh-cCCCeEEEEEEeeccC-CCCCchhhhhhHHHHHHHHHhhcCCCCceEEEEEEecC
Q 003798 634 HHFVVLFLGGADAREALAYADRMV-GNLDVSLTVIRFLSFN-HEGDDEMEKKLDDGLVTWFWVKNESNERVRYREVVVRN 711 (794)
Q Consensus 634 ~~I~v~f~GG~dDreAL~~A~rma-~~~~v~ltvl~~~~~~-~~~~~~~~~~~d~~~l~~~~~~~~~~~~v~y~e~~v~~ 711 (794)
.+|||+|.||-|.--...+|.+.+ .|+.+.|-=+-|-.+. ..+.+.++++....-++|+++.+.. -...+.|..| +
T Consensus 251 s~VcVlfSGGvDs~vvA~l~h~~vp~ne~IdLINVaF~n~e~~~~~~~PDRktgr~g~~eL~s~~P~-R~~nlV~vnV-~ 328 (520)
T KOG0573|consen 251 SNVCVLFSGGVDSTVVAVLAHYVVPENEPIDLINVAFGNPEGSKEQNVPDRKTGRRGLEELQSLYPK-RSWNLVEVNV-T 328 (520)
T ss_pred CcEEEEecCCchHHHHHHHHHhhcCCCCceeEEEeeccCCCcccccCCccHHHHHHHHHHHHHhCCc-ceEEEEeccC-C
Confidence 499999999999999999999988 5565665555554222 1223347888888999999887653 3466677766 3
Q ss_pred hHHHHHH
Q 003798 712 GAETVAS 718 (794)
Q Consensus 712 ~~~~~~~ 718 (794)
.+|...+
T Consensus 329 ~~El~~~ 335 (520)
T KOG0573|consen 329 YEELQKA 335 (520)
T ss_pred HHHHHHH
Confidence 4444433
No 143
>TIGR00659 conserved hypothetical protein TIGR00659. Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.
Probab=64.10 E-value=1.8e+02 Score=29.97 Aligned_cols=110 Identities=6% Similarity=0.031 Sum_probs=66.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 003798 316 ATLVERTETLIMEIFMPFAFAVVGMYTDVYAMFEFGWSGLSPLFGMIVTGYISKLLGTLIPSLLCQMPFRDSLTLSLMMS 395 (794)
Q Consensus 316 ~~l~~kl~~~~~~~~~PlfF~~~G~~~dl~~l~~~~~~~~~~~~~i~~~~~l~K~~~~~l~~~~~~~~~~e~~~lgl~m~ 395 (794)
+-+..-+++-+-.+..|+|= +.+.+. ..|..+..-+.++.+.-+..+++.++.+|.+. .... .+.
T Consensus 59 ~~l~~lLgPAtVALAvPLY~-------~~~~lk----~~~~~Il~~~~~G~~~~~~s~~~la~~lg~~~--~i~~--Sl~ 123 (226)
T TIGR00659 59 GVINDLLGPAVVALAIPLYK-------QLPQIK----KYWKEIILNVAVGSVIAIISGTLLALLLGLGP--EIIA--SLL 123 (226)
T ss_pred HHHHHhhHHHHHHHHHHHHH-------hHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCH--HHHH--Hhh
Confidence 33444455555666677662 333443 34544455555666667778888899999873 3333 467
Q ss_pred hHHHHHHHHHHhhhhccccCCchhHHHHHHHHHHHHhHHHHHHhh
Q 003798 396 LRGQVELLLYIHWIDKLIIGVPPFTLLVLSTVVITGIAGPLISFL 440 (794)
Q Consensus 396 ~kG~~~l~~~~~~~~~~ii~~~~~~~lv~~~ll~t~i~~plv~~l 440 (794)
+|....-+...+..+.|-...-.-...+++-++-..+.+++++++
T Consensus 124 pkSvTtpiAm~vs~~iGG~~sLta~~vvitGi~Ga~~g~~ll~~~ 168 (226)
T TIGR00659 124 PKSVTTPIAMHVSEMIGGIPAVTAVFVILTGLLGTVFGPMVLRYF 168 (226)
T ss_pred hHHhhHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 999988888888877765433333444455555444445556654
No 144
>COG0679 Predicted permeases [General function prediction only]
Probab=63.36 E-value=2.2e+02 Score=30.77 Aligned_cols=136 Identities=18% Similarity=0.078 Sum_probs=80.2
Q ss_pred hhhhHHHHHHHhhcCC-CCCchhHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccchhhHHHHHHHHHHHHHHHH
Q 003798 295 MAIANGPLWLGLVIPD-GPPLGATLVERTETLIMEIFMPFAFAVVGMYTDVYAMFEFGWSGLSPLFGMIVTGYISKLLGT 373 (794)
Q Consensus 295 ~~~~lgaflaGl~i~~-~~~~~~~l~~kl~~~~~~~~~PlfF~~~G~~~dl~~l~~~~~~~~~~~~~i~~~~~l~K~~~~ 373 (794)
.+|.+=|+++|+++.. +-+..+.+.+-++.+ .+-..|+-.+..|+.++..... .............-.+...+.+
T Consensus 167 ~nP~i~a~i~g~~~~~~~i~lP~~~~~~~~~l-~~a~~pl~li~lG~~L~~~~~~---~~~~~~~~~~~~~kll~~Pl~~ 242 (311)
T COG0679 167 TNPLIIALILGLLLNLLGISLPAPLDTAVDLL-ASAASPLALIALGLSLAFLKLK---GSKPPIILIALSLKLLLAPLVA 242 (311)
T ss_pred hCcHHHHHHHHHHHHHcCCCCcHHHHHHHHHH-HHhhhhHHHHHHhhhcchhhhc---cccchhHHHHHHHHHHHHHHHH
Confidence 4666777777777663 223344566666665 7889999999999999985444 2333333333333567778888
Q ss_pred HHHHHhcCCChHHHHHHHHH-HHhHHHHHHHHHHhhhhccccCCchhHHHHHHHHHHHHhHHHHHH
Q 003798 374 LIPSLLCQMPFRDSLTLSLM-MSLRGQVELLLYIHWIDKLIIGVPPFTLLVLSTVVITGIAGPLIS 438 (794)
Q Consensus 374 ~l~~~~~~~~~~e~~~lgl~-m~~kG~~~l~~~~~~~~~~ii~~~~~~~lv~~~ll~t~i~~plv~ 438 (794)
++.++.++++..+...+=+. ..|.+....+++.. .+.-.+..-+.+.+++++ +.++-|.+.
T Consensus 243 ~~~~~~~~l~~~~~~v~vl~~a~P~A~~~~v~a~~---~~~~~~laa~~i~ist~l-s~~t~p~~~ 304 (311)
T COG0679 243 LLVAKLLGLSGLALQVLVLLSAMPTAVNAYVLARQ---YGGDPRLAASTILLSTLL-SLLTLPLLI 304 (311)
T ss_pred HHHHHHcCCChHHHHHHHHHhhCcHHhHHHHHHHH---hCCChHHHHHHHHHHHHH-HHHHHHHHH
Confidence 88899999876655222111 34555555444433 343333344455555555 555554443
No 145
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=63.03 E-value=77 Score=34.81 Aligned_cols=95 Identities=17% Similarity=0.081 Sum_probs=56.7
Q ss_pred HHhhccc-CCChhHHHHHHHHhhCccccCCchhhhhccCCCCcHHHHH-HHHHHHHHHHHHHHhhc-cChhHHHhcC-ch
Q 003798 60 RFLLKPL-KQPRVISEMIGGIIVGPSILGRNKKFAEAMLPDNSQLVVR-SVGIMAFMYFMFIAGIK-MDFTLLKRCG-RK 135 (794)
Q Consensus 60 ~~ll~rl-~~P~ii~~IlaGiilGP~~lg~~~~~~~~lfp~~~~~~l~-~l~~lgl~~llF~~Gle-~d~~~l~~~~-~~ 135 (794)
+.+++.+ ++|..+..++.|+++-- +|.+|+-.+ +...... .+..--...+++-+|+. +|++++.+.. .+
T Consensus 195 g~l~~~~~~Ih~~v~mII~~vi~k~--~gllp~~i~-----~~a~~~~~F~~~~lt~~ll~giGla~t~l~~L~~a~t~~ 267 (347)
T TIGR00783 195 GGLLKSFPGIPAYAFMILIAAALKA--FGLVPKEIE-----EGAKMLSQFISKNLTWPLMVGVGVSYIDLDDLVAALSWQ 267 (347)
T ss_pred HHHHHhcccCCHHHHHHHHHHHHHH--hCCCCHHHH-----HHHHHHHHHHHHHHHHHHHHHcccccCCHHHHHHHhchh
Confidence 3344443 68999999999999975 565542110 1112222 33333333344447876 8999998877 44
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcc
Q 003798 136 HVYIAVTGVIIPTATSAAVAFLTRKS 161 (794)
Q Consensus 136 ~~~ia~~~~~~p~~l~~~~~~~l~~~ 161 (794)
.+.+.+.+++--.+.++.++.+++.+
T Consensus 268 ~vviiv~~Vlg~ii~s~lvGKllG~Y 293 (347)
T TIGR00783 268 FVVICLSVVVAMILGGAFLGKLMGMY 293 (347)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHhCCC
Confidence 45555555555555666777777654
No 146
>PRK05253 sulfate adenylyltransferase subunit 2; Provisional
Probab=61.06 E-value=29 Score=37.50 Aligned_cols=39 Identities=15% Similarity=0.130 Sum_probs=31.1
Q ss_pred eEEEEEecCCccHHHHHHHHHHHhcCCCeEEEEEEeecc
Q 003798 634 HHFVVLFLGGADAREALAYADRMVGNLDVSLTVIRFLSF 672 (794)
Q Consensus 634 ~~I~v~f~GG~dDreAL~~A~rma~~~~v~ltvl~~~~~ 672 (794)
.++++.|.||+|+--.|.+|.+.-...+..+.++++-+.
T Consensus 28 ~~~vv~~SGGKDS~VLL~La~ka~~~~~~~~~vl~iDTG 66 (301)
T PRK05253 28 ENPVMLYSIGKDSSVMLHLARKAFYPGKLPFPLLHVDTG 66 (301)
T ss_pred CCEEEEecCCHHHHHHHHHHHHhhcccCCCeeEEEEeCC
Confidence 378999999999999999998876543566778887644
No 147
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.
Probab=60.71 E-value=49 Score=32.47 Aligned_cols=57 Identities=18% Similarity=0.169 Sum_probs=39.4
Q ss_pred EEEEEecCCccHHHHHHHHHHHhcCCCeEEEEEEeeccCCCCCchhhhhhHHHHHHHHHhhc
Q 003798 635 HFVVLFLGGADAREALAYADRMVGNLDVSLTVIRFLSFNHEGDDEMEKKLDDGLVTWFWVKN 696 (794)
Q Consensus 635 ~I~v~f~GG~dDreAL~~A~rma~~~~v~ltvl~~~~~~~~~~~~~~~~~d~~~l~~~~~~~ 696 (794)
+|++.+.||.|+--++.++.+...+-+.+++++++..... .+...+.+.++++..+.
T Consensus 1 ~v~v~~SGG~DS~vl~~l~~~~~~~~~~~v~~v~id~~~~-----~~~~~~~~~~~~~~~~~ 57 (185)
T cd01992 1 KILVAVSGGPDSMALLHLLSELKPRLGLRLVAVHVDHGLR-----PESDEEAAFVADLCAKL 57 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCCC-----chHHHHHHHHHHHHHHc
Confidence 5789999999999999999998876566788888754321 11123444555665544
No 148
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [].
Probab=58.05 E-value=2.2e+02 Score=29.08 Aligned_cols=111 Identities=11% Similarity=0.117 Sum_probs=66.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 003798 315 GATLVERTETLIMEIFMPFAFAVVGMYTDVYAMFEFGWSGLSPLFGMIVTGYISKLLGTLIPSLLCQMPFRDSLTLSLMM 394 (794)
Q Consensus 315 ~~~l~~kl~~~~~~~~~PlfF~~~G~~~dl~~l~~~~~~~~~~~~~i~~~~~l~K~~~~~l~~~~~~~~~~e~~~lgl~m 394 (794)
++-+..-+++-+-.+..|+|= +...+. ..|..++.-++++.+.-++.+++.++.+|.+.. .. ..+
T Consensus 48 g~~l~~lLgPatVALAvPLY~-------~~~~l~----~~~~~il~~~~~g~~~~~~~~~~l~~~lgl~~~--~~--~Sl 112 (215)
T PF04172_consen 48 GDILSFLLGPATVALAVPLYR-------QRRLLK----KNWIPILVGVLVGSLVSIFSAVLLARLLGLSPE--II--LSL 112 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHH--HH--HHH
Confidence 344444555555566666662 233443 345555566666667778888888999988653 33 335
Q ss_pred HhHHHHHHHHHHhhhhccccCCchhHHHHHHHHHHHHhHHHHHHhh
Q 003798 395 SLRGQVELLLYIHWIDKLIIGVPPFTLLVLSTVVITGIAGPLISFL 440 (794)
Q Consensus 395 ~~kG~~~l~~~~~~~~~~ii~~~~~~~lv~~~ll~t~i~~plv~~l 440 (794)
.+|....-+...+..+.|-...-.-..++++-++-..+.+++++++
T Consensus 113 ~pkSVTtpiAi~is~~iGG~~sLta~~VvitGi~Ga~~g~~llk~~ 158 (215)
T PF04172_consen 113 APKSVTTPIAIEISEQIGGIPSLTAVFVVITGILGAVLGPPLLKLL 158 (215)
T ss_pred HHHHhhHHHHHHHHHHhCChHHHHHHHHHHHhhHHHHhHHHHHhHc
Confidence 7999988888888777775543333444444455444445556653
No 149
>COG1883 OadB Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit [Energy production and conversion]
Probab=57.24 E-value=1.7 Score=45.23 Aligned_cols=108 Identities=15% Similarity=0.152 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHhcccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhHHHHHHHHH
Q 003798 326 IMEIFMPFAFAVVGMYTDVYAMFEFGWSGLSPLFGMIVTGYISKLLGTLIPSLLCQMPFRDSLTLSLMMSLRGQVELLLY 405 (794)
Q Consensus 326 ~~~~~~PlfF~~~G~~~dl~~l~~~~~~~~~~~~~i~~~~~l~K~~~~~l~~~~~~~~~~e~~~lgl~m~~kG~~~l~~~ 405 (794)
.++++=++.|..+|..+|++-+. +++...++ -..+-++ +..+++.+...|+..+|+..+|.+=+.-|-.++.+.
T Consensus 82 ~~~i~PllIFmGvGAmTDFgpll-anPktllL----GaAAQ~G-IF~t~~~A~~lgf~~~eAasIgIIGGADGPTaIy~t 155 (375)
T COG1883 82 GSGIFPLLIFMGVGAMTDFGPLL-ANPKTLLL----GAAAQFG-IFATVFGALALGFTPKEAASIGIIGGADGPTAIYLT 155 (375)
T ss_pred ccCcccHHHHhccchhcccchhh-cCcHHHHh----hhHHHhc-hHHHHHHHHHhCCCHhhhhheeeeccCCCCceEEec
Confidence 46788888999999999998876 23433322 1222222 234556777889999999999987666666665544
Q ss_pred HhhhhccccCCchhH-----HHHHHHHHHHHhHHHHHHhhcCCCCc
Q 003798 406 IHWIDKLIIGVPPFT-----LLVLSTVVITGIAGPLISFLYDPTRP 446 (794)
Q Consensus 406 ~~~~~~~ii~~~~~~-----~lv~~~ll~t~i~~plv~~l~~~~~~ 446 (794)
+. +.++... +--.|+++ -++-||+.|.+-.+++|
T Consensus 156 ~~------LAP~Ll~~iAvAAYSYMALV-PiIQPpimkaLTt~~ER 194 (375)
T COG1883 156 NK------LAPELLGAIAVAAYSYMALV-PIIQPPIMKALTTKEER 194 (375)
T ss_pred cc------cCHHHHHHHHHHHHHHHHHh-hhcccHHHHHhcCHHHH
Confidence 32 2333322 22234555 67789999988655544
No 150
>PRK12563 sulfate adenylyltransferase subunit 2; Provisional
Probab=54.77 E-value=28 Score=37.64 Aligned_cols=38 Identities=16% Similarity=0.127 Sum_probs=30.6
Q ss_pred EEEEEecCCccHHHHHHHHHHHhcCCCeEEEEEEeecc
Q 003798 635 HFVVLFLGGADAREALAYADRMVGNLDVSLTVIRFLSF 672 (794)
Q Consensus 635 ~I~v~f~GG~dDreAL~~A~rma~~~~v~ltvl~~~~~ 672 (794)
++++.|.||+|+--.|.+|.+.....+..+.++++-+.
T Consensus 39 ~~~v~~SgGKDS~VlLhLa~kaf~~~~~~~pvl~VDTG 76 (312)
T PRK12563 39 KPVMLYSIGKDSVVMLHLAMKAFRPTRPPFPLLHVDTT 76 (312)
T ss_pred CcEEEecCChHHHHHHHHHHHhhcccCCCeeEEEeCCC
Confidence 56889999999999999999987544556788887543
No 151
>COG2985 Predicted permease [General function prediction only]
Probab=54.07 E-value=53 Score=37.33 Aligned_cols=110 Identities=13% Similarity=0.096 Sum_probs=68.6
Q ss_pred hhHHHHHHHHhhCccccCCc-hhhhhccCCCCcHHHHHHHHHHHHHHHHHHHhhccChhHH---HhcCchhhHHHHHHHH
Q 003798 70 RVISEMIGGIIVGPSILGRN-KKFAEAMLPDNSQLVVRSVGIMAFMYFMFIAGIKMDFTLL---KRCGRKHVYIAVTGVI 145 (794)
Q Consensus 70 ~ii~~IlaGiilGP~~lg~~-~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l---~~~~~~~~~ia~~~~~ 145 (794)
..-|.+++|++||- +|.+ |-+ +..| ......+.++|+++||=-+|++---+.. -..+-.....+..-.+
T Consensus 397 ~aGGpLivaLiLG~--ig~iGpl~--w~mP---~~An~~lrelGl~lFLA~VGl~aG~~f~~tL~~~Gl~~ig~g~lit~ 469 (544)
T COG2985 397 NAGGPLIVALILGF--IGAIGPLT--WFMP---PGALLALRELGLALFLAGVGLSAGSGFVNTLTGSGLQIIGYGALVTL 469 (544)
T ss_pred ccccHHHHHHHHHH--hcccCceE--EEcC---hhHHHHHHHHHHHHHHHhhccccccchHhhhcccchhhhhHHHHHHH
Confidence 44567888888885 4444 211 1224 4567788999999887777776543322 2344444556666677
Q ss_pred HHHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHhhccHHHHHHHHHhc
Q 003798 146 IPTATSAAVAFLTRKSMDPELAKVSSIGAITTSLAVTSFPVLNPILKDL 194 (794)
Q Consensus 146 ~p~~l~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el 194 (794)
+|.+.++.++.++.+.. ...++=+++-+.|++|..+-. .|.
T Consensus 470 vp~i~~~llg~~v~kmn-------~~~l~G~laGs~T~ppaLa~a-nd~ 510 (544)
T COG2985 470 VPVIIVFLLGRYVLKMN-------WLLLCGALAGSMTDPPALAFA-NDA 510 (544)
T ss_pred HHHHHHHHHHHHHHhcc-------HHHHhhHHhcCCCChHHHHHH-hhc
Confidence 88888888888776643 223344455588888876643 443
No 152
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=54.04 E-value=1.2e+02 Score=32.98 Aligned_cols=93 Identities=13% Similarity=0.067 Sum_probs=49.3
Q ss_pred hhHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccchhhHHHHHHHHHHHHHHHHHHH
Q 003798 297 IANGPLWLGLVIPDGPPLGATLVERTETLIMEIFMPFAFAVVGMYTDVYAMFEFGWSGLSPLFGMIVTGYISKLLGTLIP 376 (794)
Q Consensus 297 ~~lgaflaGl~i~~~~~~~~~l~~kl~~~~~~~~~PlfF~~~G~~~dl~~l~~~~~~~~~~~~~i~~~~~l~K~~~~~l~ 376 (794)
.++.+.++|...|.-+..+..+. .|.. ..+...+.|...|++++..++. +....|..........++.=.+.++..
T Consensus 6 ~l~~ai~la~~~P~~g~~~~~~~--~~~~-~~~~v~~iFf~~Gl~L~~~~l~-~~~~~~~~~l~~~~~~fvl~Pll~~~~ 81 (313)
T PF13593_consen 6 GLLLAILLAYLFPAPGAAGGVIK--PEYV-IKYGVALIFFISGLSLPTEELK-AALRNWRLHLFVQAFNFVLFPLLGFGL 81 (313)
T ss_pred HHHHHHHHHHHcCcccccCCccc--hhhh-HHHHHHHHHHHHcCCCCHHHHH-HHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 35667788888887433333332 1222 3334666777789999988876 223455443333444444444444444
Q ss_pred HHhcCCChHHHHHHHHH
Q 003798 377 SLLCQMPFRDSLTLSLM 393 (794)
Q Consensus 377 ~~~~~~~~~e~~~lgl~ 393 (794)
.+..+-...+.+..|+.
T Consensus 82 ~~l~~~~~~~~l~~Gl~ 98 (313)
T PF13593_consen 82 SRLFPAFLPPELALGLL 98 (313)
T ss_pred HHHhhccCCHHHHHHHH
Confidence 44443222344555554
No 153
>TIGR01625 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplication domain. This model represents a domain that is duplicated the aspartate-alanine antiporter AspT, as well as HI0035 of Haemophilus influenzae, YidE and YbjL of E. coli, and a number of other known or putative transporters. Member proteins may have 0, 1, or 2 copies of TrkA potassium uptake domain pfam02080 between the duplications. The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=53.13 E-value=45 Score=32.18 Aligned_cols=94 Identities=20% Similarity=0.211 Sum_probs=55.5
Q ss_pred hHHHHHHHhhcCCC---CCchhHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccc-hhhHHHHHHHHHHHHHHHH
Q 003798 298 ANGPLWLGLVIPDG---PPLGATLVERTETLIMEIFMPFAFAVVGMYTDVYAMFEFGWSG-LSPLFGMIVTGYISKLLGT 373 (794)
Q Consensus 298 ~lgaflaGl~i~~~---~~~~~~l~~kl~~~~~~~~~PlfF~~~G~~~dl~~l~~~~~~~-~~~~~~i~~~~~l~K~~~~ 373 (794)
.-|+++.|+++.+. .|..-.+......+..++.+-+|...+|++.-...+..-.... +.......++.++.-.+..
T Consensus 24 ~~G~L~vgL~~G~~~~~~p~~~~~p~~~~~~l~~~GL~lFl~~vGl~aG~~f~~~l~~~gg~~~~~~g~~v~~~~~~~~~ 103 (154)
T TIGR01625 24 AGGVLFVGLLLGHFGATGPLTWYIPFSANLFIREFGLMLFLYGVGLSAGPGFFSSLKDGGGLLRINGGALITVVPTLLVA 103 (154)
T ss_pred cHHHHHHHHHHHhccccCCcceecChhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHH
Confidence 45777777777653 2333445555666678889999999999988643332100222 2223333344444446666
Q ss_pred HHHHHhcCCChHHHHHHHHH
Q 003798 374 LIPSLLCQMPFRDSLTLSLM 393 (794)
Q Consensus 374 ~l~~~~~~~~~~e~~~lgl~ 393 (794)
++..+++|+++- ...|.+
T Consensus 104 ~~~~~~~~~~~~--~~~G~~ 121 (154)
T TIGR01625 104 VALIKLLRINYA--LTAGML 121 (154)
T ss_pred HHHHHHhCCCHH--HHHHHH
Confidence 677788899874 444554
No 154
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=53.11 E-value=2.1e+02 Score=31.50 Aligned_cols=99 Identities=19% Similarity=0.212 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHhhcccCCChhHHHHHHHHhhCccc--cCCchhhhhccCCCCcHHHHHHHHHHHHHHHHHHHhhccCh
Q 003798 49 IVFIICTTSIIRFLLKPLKQPRVISEMIGGIIVGPSI--LGRNKKFAEAMLPDNSQLVVRSVGIMAFMYFMFIAGIKMDF 126 (794)
Q Consensus 49 i~lil~~~~l~~~ll~rl~~P~ii~~IlaGiilGP~~--lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~d~ 126 (794)
+.+...++.+.+.+.+++|+|.. ++++.++++-.+ .+.+ +.+.-..+..++..++--.+|.++|.
T Consensus 190 ~~~l~~~~~~~g~l~~~lr~Pa~--~ll~~l~l~a~v~~~~~~-----------~~~lP~wl~~va~~~iG~~IG~~f~~ 256 (352)
T COG3180 190 LLLLILAALLGGLLGKLLRFPAP--TLLGPLLLGAIVHFGGGI-----------TIQLPAWLLAVAQALIGALIGSRFDR 256 (352)
T ss_pred HHHHHHHHHHHHHHHHHHcCCcH--HHHHHHHHHHHhhcccce-----------eeeCCHHHHHHHHHHHHHHHcccccH
Confidence 55566677777888899998863 334444433211 1111 01112234466777788899999998
Q ss_pred hHHHhcCchhhHHHHHHHHHHHHHHHHHHHHhhcc
Q 003798 127 TLLKRCGRKHVYIAVTGVIIPTATSAAVAFLTRKS 161 (794)
Q Consensus 127 ~~l~~~~~~~~~ia~~~~~~p~~l~~~~~~~l~~~ 161 (794)
..++...|....+ +...+.-++++.+.++++...
T Consensus 257 ~~l~~~~r~~~~~-~v~ii~l~~~~~~~a~ll~~~ 290 (352)
T COG3180 257 SILREAKRLLPAI-LVSIIALMAIAAGMAGLLSWL 290 (352)
T ss_pred HHHHHhHhhcchH-HHHHHHHHHHHHHHHHHHHHh
Confidence 8887655544333 233333333444445555443
No 155
>PF05982 DUF897: Domain of unknown function (DUF897) ; InterPro: IPR010293 This is a family of bacterial proteins with unknown function
Probab=51.92 E-value=1.5e+02 Score=32.27 Aligned_cols=50 Identities=14% Similarity=0.289 Sum_probs=28.9
Q ss_pred HHHHHHHHHhhccChhHHHhcCchhhHHHHHHHHHHHH---HHHHHHHHhhccC
Q 003798 112 AFMYFMFIAGIKMDFTLLKRCGRKHVYIAVTGVIIPTA---TSAAVAFLTRKSM 162 (794)
Q Consensus 112 gl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~~~p~~---l~~~~~~~l~~~~ 162 (794)
-+.+||...|++- .++++..+|..+.+-..+++.|.+ ++..++++++...
T Consensus 212 ~L~lFLLeMGl~A-~~rL~~l~~~g~~li~Fgi~~Pli~a~ig~~lg~~~gls~ 264 (327)
T PF05982_consen 212 VLCLFLLEMGLVA-ARRLRDLRKVGWFLIAFGILMPLINALIGIGLGWLLGLSP 264 (327)
T ss_pred HHHHHHHHhhHHH-HHhhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 3566777788754 233444444445555566666765 5566666665543
No 156
>COG0679 Predicted permeases [General function prediction only]
Probab=50.49 E-value=3.3e+02 Score=29.45 Aligned_cols=83 Identities=22% Similarity=0.268 Sum_probs=56.8
Q ss_pred cCCChhHHHHHHHHhhCccccCCchhhhhccCCCCcHHHHHHHHHHHHHHHHHHHhhccChhHHHhcCchhhHHHHH--H
Q 003798 66 LKQPRVISEMIGGIIVGPSILGRNKKFAEAMLPDNSQLVVRSVGIMAFMYFMFIAGIKMDFTLLKRCGRKHVYIAVT--G 143 (794)
Q Consensus 66 l~~P~ii~~IlaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~~~~~ia~~--~ 143 (794)
++.|.+++.+ .|+++....+. +|+.-.+..+.+++...-+-|+..|+.++....++...+....+.. -
T Consensus 166 ~~nP~i~a~i-~g~~~~~~~i~---------lP~~~~~~~~~l~~a~~pl~li~lG~~L~~~~~~~~~~~~~~~~~~~kl 235 (311)
T COG0679 166 LTNPLIIALI-LGLLLNLLGIS---------LPAPLDTAVDLLASAASPLALIALGLSLAFLKLKGSKPPIILIALSLKL 235 (311)
T ss_pred HhCcHHHHHH-HHHHHHHcCCC---------CcHHHHHHHHHHHHhhhhHHHHHHhhhcchhhhccccchhHHHHHHHHH
Confidence 4567777654 46666543222 2444577899999999999999999999997777777777776666 3
Q ss_pred HHHHHHHHHHHHHHhh
Q 003798 144 VIIPTATSAAVAFLTR 159 (794)
Q Consensus 144 ~~~p~~l~~~~~~~l~ 159 (794)
++.|. ++..+.++++
T Consensus 236 l~~Pl-~~~~~~~~~~ 250 (311)
T COG0679 236 LLAPL-VALLVAKLLG 250 (311)
T ss_pred HHHHH-HHHHHHHHcC
Confidence 44444 4444555555
No 157
>PRK01663 C4-dicarboxylate transporter DctA; Reviewed
Probab=50.31 E-value=3.1e+02 Score=31.21 Aligned_cols=37 Identities=16% Similarity=0.116 Sum_probs=24.9
Q ss_pred ChhHHHhcCchhhHHHHHHHHHHHHHHHHHHHHhhcc
Q 003798 125 DFTLLKRCGRKHVYIAVTGVIIPTATSAAVAFLTRKS 161 (794)
Q Consensus 125 d~~~l~~~~~~~~~ia~~~~~~p~~l~~~~~~~l~~~ 161 (794)
|.+.+.|.+.+.+..-+....+..++|..++.++.+.
T Consensus 66 ~~~~lg~i~~~~~~~f~~tt~iA~~lgl~~~~l~~pg 102 (428)
T PRK01663 66 DMKKVGRVGGKALLYFEIVSTIALIIGLIVVNVVQPG 102 (428)
T ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 6667777777776665666666677777777776553
No 158
>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional
Probab=50.10 E-value=1.1e+02 Score=34.95 Aligned_cols=59 Identities=17% Similarity=0.044 Sum_probs=43.0
Q ss_pred eEEEEEecCCccHHHHHHHHHHHh-cCCCeEEEEEEeeccCCCCCchhhhhhHHHHHHHHHhhcC
Q 003798 634 HHFVVLFLGGADAREALAYADRMV-GNLDVSLTVIRFLSFNHEGDDEMEKKLDDGLVTWFWVKNE 697 (794)
Q Consensus 634 ~~I~v~f~GG~dDreAL~~A~rma-~~~~v~ltvl~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~ 697 (794)
.+|++.+.||+|.--.|.+..++. ..++.+++++|+...-. .+.+.+.++.+++..+..
T Consensus 16 ~~ilvavSGG~DS~~Ll~~l~~~~~~~~~~~l~a~hvnhglr-----~~s~~~~~~~~~~~~~l~ 75 (436)
T PRK10660 16 RQILVAFSGGLDSTVLLHLLVQWRTENPGVTLRAIHVHHGLS-----PNADSWVKHCEQVCQQWQ 75 (436)
T ss_pred CeEEEEecCCHHHHHHHHHHHHHHHhcCCCeEEEEEEeCCCC-----cchHHHHHHHHHHHHHcC
Confidence 589999999999999998888876 45678999999964321 122334567777766553
No 159
>COG3969 Predicted phosphoadenosine phosphosulfate sulfotransferase [General function prediction only]
Probab=49.75 E-value=43 Score=36.28 Aligned_cols=55 Identities=16% Similarity=0.087 Sum_probs=40.9
Q ss_pred eEEEEEecCCccHHHHHHHHHHHhcCCCe-EEEEEEeeccCCCCCchhhhhhHHHHHHHHHhh
Q 003798 634 HHFVVLFLGGADAREALAYADRMVGNLDV-SLTVIRFLSFNHEGDDEMEKKLDDGLVTWFWVK 695 (794)
Q Consensus 634 ~~I~v~f~GG~dDreAL~~A~rma~~~~v-~ltvl~~~~~~~~~~~~~~~~~d~~~l~~~~~~ 695 (794)
.+|+|-|.||+|.-..|.++.+.++..+- .+.|++.- -|-+...--++++|.+..
T Consensus 28 ~~VcVSFSGGKDS~lmLhL~~~~ar~~~~~~i~VlfiD-------~E~QYs~TidyV~em~~~ 83 (407)
T COG3969 28 PRVCVSFSGGKDSGLMLHLVAEVARENGRDKISVLFID-------WEAQYSCTIDYVQEMRES 83 (407)
T ss_pred CeEEEEecCCCchhHHHHHHHHHHHHhCCCceEEEEEc-------chhhhhhHHHHHHHHHhc
Confidence 49999999999999999999999976654 78888752 122334455567776654
No 160
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=49.39 E-value=90 Score=32.92 Aligned_cols=112 Identities=12% Similarity=-0.021 Sum_probs=61.6
Q ss_pred EecCCccHHHHHHHHHHHhc-CCCeEEEEEEeeccCCCCCchhhhhhHHHHHHHHHhhcCCCCceEEEE---EEecChHH
Q 003798 639 LFLGGADAREALAYADRMVG-NLDVSLTVIRFLSFNHEGDDEMEKKLDDGLVTWFWVKNESNERVRYRE---VVVRNGAE 714 (794)
Q Consensus 639 ~f~GG~dDreAL~~A~rma~-~~~v~ltvl~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~v~y~e---~~v~~~~~ 714 (794)
+..=.|.|+-|++.|.|+.+ ....++|++.+=++. .++.+++... .+-++..-.+ .--.+...
T Consensus 32 ~~~in~~D~~AvEeAlrLke~~~~~eV~vlt~Gp~~-----------a~~~lr~aLA--mGaDraili~d~~~~~~d~~~ 98 (260)
T COG2086 32 PLSINPFDLNAVEEALRLKEKGYGGEVTVLTMGPPQ-----------AEEALREALA--MGADRAILITDRAFAGADPLA 98 (260)
T ss_pred CcccChhhHHHHHHHHHhhccCCCceEEEEEecchh-----------hHHHHHHHHh--cCCCeEEEEecccccCccHHH
Confidence 33337999999999999999 688999999986432 2223333222 2333332222 11123344
Q ss_pred HHHHHHhhhccCcccEEEEecccCC--CCccccccCCCCCCCccchhhhhh
Q 003798 715 TVASIQAVNDEAYCDLWIVGRYQGI--NGKLLEGLEAWSEDNELGVIGDYV 763 (794)
Q Consensus 715 ~~~~i~~~~~~~~~DL~iVGr~~~~--~~~~~~gl~~w~e~~eLG~igd~l 763 (794)
|..+|.+...+..+||++.|+.... .+.+=..+.+|-..|-++.+-++-
T Consensus 99 ta~~Laa~~~~~~~~LVl~G~qa~D~~t~qvg~~lAe~Lg~P~~t~v~~i~ 149 (260)
T COG2086 99 TAKALAAAVKKIGPDLVLTGKQAIDGDTGQVGPLLAELLGWPQVTYVSKIE 149 (260)
T ss_pred HHHHHHHHHHhcCCCEEEEecccccCCccchHHHHHHHhCCceeeeEEEEE
Confidence 4555544322211789999997532 122222333455556665554443
No 161
>PRK04125 murein hydrolase regulator LrgA; Provisional
Probab=48.91 E-value=2e+02 Score=27.27 Aligned_cols=105 Identities=10% Similarity=0.094 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccCCCh---hHHHHHHHHhhCccccCCch-hhhhccCCCCcHHHHHHHHHHHHHHHHH
Q 003798 43 LLVLFEIVFIICTTSIIRFLLKPLKQPR---VISEMIGGIIVGPSILGRNK-KFAEAMLPDNSQLVVRSVGIMAFMYFMF 118 (794)
Q Consensus 43 ~~~l~~i~lil~~~~l~~~ll~rl~~P~---ii~~IlaGiilGP~~lg~~~-~~~~~lfp~~~~~~l~~l~~lgl~~llF 118 (794)
..++.|+++++.+..+...+.+-+++|- ++|.++.=+.| .++..+ +.. ....--.+.++++.|+==
T Consensus 7 ~~~l~ql~ill~~~~lGe~i~~ll~lPiPGsViGMlLL~l~L---~~~~vk~~~v-------~~~a~~LL~~m~LfFVPa 76 (141)
T PRK04125 7 YSFLHQAFIFAAIMLISNIIASFLPIPMPASVIGLVLLFVLL---CTKVVKLEQV-------ESLGTALTNNIGFLFVPS 76 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHH---HhCCcCHHHH-------HHHHHHHHHHHHHHHhhh
Confidence 3578899888888888777777777653 33333221111 123321 000 011122345555555555
Q ss_pred HHhhccChhHHHhcCchhhHHHHHHHHHHHHHHHHHHHH
Q 003798 119 IAGIKMDFTLLKRCGRKHVYIAVTGVIIPTATSAAVAFL 157 (794)
Q Consensus 119 ~~Gle~d~~~l~~~~~~~~~ia~~~~~~p~~l~~~~~~~ 157 (794)
-+|+=..++.+++++...+..-+.+.++.++.+..+..+
T Consensus 77 gVGim~~~~ll~~~~~~Il~~ivvSTllvl~vtg~v~~~ 115 (141)
T PRK04125 77 GISVINSLGVMSQYPVQIIGVIIVATILLLACTGLFSQF 115 (141)
T ss_pred HhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667766777777777776666666666666555444433
No 162
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=48.16 E-value=1.4e+02 Score=33.29 Aligned_cols=97 Identities=12% Similarity=0.230 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHHHHhcccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHhcCCC-hHHHHH-HHHHHH--h
Q 003798 321 RTETLIMEIFMPFAFAVVGMYTDVYAMFEFGWSGLSPLFGMIVTGYISKLLGTLIPSLLCQMP-FRDSLT-LSLMMS--L 396 (794)
Q Consensus 321 kl~~~~~~~~~PlfF~~~G~~~dl~~l~~~~~~~~~~~~~i~~~~~l~K~~~~~l~~~~~~~~-~~e~~~-lgl~m~--~ 396 (794)
.+.+.++..++|+-..+.=++.|+..+. .... ..+..++++.++-++++.++.+.++.. -.|... .|.+.. .
T Consensus 51 ~~y~~v~~~~vPlai~LlLl~~Dlr~i~---~~g~-~~l~~F~~~~~g~viG~~va~~l~~~~l~~~~wk~ag~l~gsyi 126 (378)
T PF05684_consen 51 PVYDFVWTYLVPLAIPLLLLSADLRRIL---RLGG-RLLLAFLIGAVGTVIGAVVAFLLFGGFLGPEGWKIAGMLAGSYI 126 (378)
T ss_pred hHHHHHHHHHHHHHHHHHHHHccHHHHH---HhhH-HHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhccc
Confidence 3445556677777666666889998886 2333 355666667777777877777766543 223322 233222 2
Q ss_pred HHHHHHHHHHhhhhccccCCchhHHHHH
Q 003798 397 RGQVELLLYIHWIDKLIIGVPPFTLLVL 424 (794)
Q Consensus 397 kG~~~l~~~~~~~~~~ii~~~~~~~lv~ 424 (794)
-|.+..+.....++ .+++.++..+.
T Consensus 127 GGs~N~~Av~~al~---~~~~~~~a~~a 151 (378)
T PF05684_consen 127 GGSVNFVAVAEALG---VSDSLFAAALA 151 (378)
T ss_pred CchhHHHHHHHHHC---CCHHHHHHHHH
Confidence 36666655555543 24455554443
No 163
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=47.91 E-value=79 Score=34.05 Aligned_cols=76 Identities=18% Similarity=0.299 Sum_probs=53.9
Q ss_pred HHHHHHHHhhCccccCCchhhhhccCCCCcHHHHHHHHHHHHHHHHHHHhhccChhHHHhcCchhhHHHHHHHHHHHHHH
Q 003798 72 ISEMIGGIIVGPSILGRNKKFAEAMLPDNSQLVVRSVGIMAFMYFMFIAGIKMDFTLLKRCGRKHVYIAVTGVIIPTATS 151 (794)
Q Consensus 72 i~~IlaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~~~p~~l~ 151 (794)
+-.++.|+++|+. .+++.+.+-| -..+-+-|+-|..|-.+|+..+.+.+-.-+.+++..++++....
T Consensus 175 llP~iiG~iLGNL----D~~~r~fl~~---------~~~~lIPF~~f~lGa~inl~~i~~aGl~GIlLgv~~~~vtg~~~ 241 (314)
T PF03812_consen 175 LLPIIIGMILGNL----DPDFRKFLAP---------GVPILIPFFGFALGAGINLSNIIKAGLSGILLGVIVVVVTGIPL 241 (314)
T ss_pred HHHHHHHHHHhcC----CHHHHHHHhc---------CCCeeeehhhhhhcCCCCHHHHHHhCcchHHHHHHHHHHHhHHH
Confidence 3446889999972 3444433323 22344557889999999999999999999999888887777666
Q ss_pred HHHHHHhhc
Q 003798 152 AAVAFLTRK 160 (794)
Q Consensus 152 ~~~~~~l~~ 160 (794)
+....++.+
T Consensus 242 ~~~dr~i~~ 250 (314)
T PF03812_consen 242 YLADRLILK 250 (314)
T ss_pred HHHHHHHcC
Confidence 666666543
No 164
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=43.64 E-value=63 Score=31.56 Aligned_cols=38 Identities=16% Similarity=0.191 Sum_probs=31.6
Q ss_pred EEEEEecCCccHHHHHHHHHHHhcCC--CeEEEEEEeecc
Q 003798 635 HFVVLFLGGADAREALAYADRMVGNL--DVSLTVIRFLSF 672 (794)
Q Consensus 635 ~I~v~f~GG~dDreAL~~A~rma~~~--~v~ltvl~~~~~ 672 (794)
||++.+.||.|.--++.++.+..++- +.++..+++...
T Consensus 1 ~v~v~~SGG~DS~~ll~~l~~~~~~~~~~~~~~~~~~d~~ 40 (185)
T cd01993 1 RILVALSGGKDSLVLLHVLKKLQRRYPYGFELEALTVDEG 40 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHhhcCCCeEEEEEEEECC
Confidence 58999999999999999999887654 678888887643
No 165
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=43.63 E-value=1.9e+02 Score=31.04 Aligned_cols=76 Identities=12% Similarity=0.220 Sum_probs=54.3
Q ss_pred HHHHHHHHhhCccccCCchhhhhccCCCCcHHHHHHHHHHHHHHHHHHHhhccChhHHHhcCchhhHHHHHHHHHHHHHH
Q 003798 72 ISEMIGGIIVGPSILGRNKKFAEAMLPDNSQLVVRSVGIMAFMYFMFIAGIKMDFTLLKRCGRKHVYIAVTGVIIPTATS 151 (794)
Q Consensus 72 i~~IlaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~~~p~~l~ 151 (794)
+-.++.|+++|+. .+++.+.+-| -..+-..|+-|..|-.+|++.+.+.+-.-+.+|+....++....
T Consensus 175 ilPlliG~ilGNL----D~~~r~fl~~---------~~~~lIpFf~FaLGaginl~~i~~aGl~GIlLGl~v~~vtG~~~ 241 (314)
T TIGR00793 175 VLPFLVGFALGNL----DPELRDFFSK---------AVQTLIPFFAFALGNTIDLGVIIQTGLLGILLGVSVIILTGIPL 241 (314)
T ss_pred HHHHHHHHHHhcC----CHHHHHHhcc---------CCCeeeehhhhhhcCCCCHHHHHHhCcchHHHHHHHHHHHhHHH
Confidence 3446889999972 3444433322 22334557889999999999999999888888888888877777
Q ss_pred HHHHHHhhc
Q 003798 152 AAVAFLTRK 160 (794)
Q Consensus 152 ~~~~~~l~~ 160 (794)
+....++.+
T Consensus 242 ~~~dr~~~g 250 (314)
T TIGR00793 242 ILADKFIGG 250 (314)
T ss_pred HHHHHHhcC
Confidence 777776643
No 166
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=41.87 E-value=4.8e+02 Score=28.16 Aligned_cols=136 Identities=15% Similarity=0.070 Sum_probs=76.6
Q ss_pred hhhhHHHHHHHhhcCCC-CCchhHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccchhhHHHHHHHHHHHHHHHH
Q 003798 295 MAIANGPLWLGLVIPDG-PPLGATLVERTETLIMEIFMPFAFAVVGMYTDVYAMFEFGWSGLSPLFGMIVTGYISKLLGT 373 (794)
Q Consensus 295 ~~~~lgaflaGl~i~~~-~~~~~~l~~kl~~~~~~~~~PlfF~~~G~~~dl~~l~~~~~~~~~~~~~i~~~~~l~K~~~~ 373 (794)
.++.+=|.++|+++.-. -+..+.+.+-++.+ .+...|+-...+|+.++...+. ..+.......++..+.-.+.+
T Consensus 181 ~nP~iia~i~Gl~~~~~~i~lP~~l~~~l~~l-g~~~~plaLl~lG~~l~~~~~~----~~~~~~~~~~~~klil~P~i~ 255 (321)
T TIGR00946 181 KFPPLWAPLLSVILSLVGFKMPGLILKSISIL-SGATTPMALFSLGLALSPRKIK----LGVRDAILALIVRFLVQPAVM 255 (321)
T ss_pred hCCChHHHHHHHHHHHHhhcCcHHHHHHHHHH-HHHHHHHHHHHHHHhhChhhhc----cChHHHHHHHHHHHHHHHHHH
Confidence 35666677777776531 23345666666665 7888999999999999876654 234444455555666666666
Q ss_pred HHHHHhcCCChHHHHHHHHH-HHhHHHHHHHHHHhhhhccccCCchhH-HHHHHHHHHHHhHHHHHHhh
Q 003798 374 LIPSLLCQMPFRDSLTLSLM-MSLRGQVELLLYIHWIDKLIIGVPPFT-LLVLSTVVITGIAGPLISFL 440 (794)
Q Consensus 374 ~l~~~~~~~~~~e~~~lgl~-m~~kG~~~l~~~~~~~~~~ii~~~~~~-~lv~~~ll~t~i~~plv~~l 440 (794)
+..+...+.+......+-+. ..|-+....++ +.+.+. +++..+ .+.+++++ +.++-|+.-++
T Consensus 256 ~~~~~~~~l~~~~~~~~vl~aa~P~a~~~~i~---A~~y~~-~~~~aa~~v~~sT~l-s~~tlp~~~~l 319 (321)
T TIGR00946 256 AGISKLIGLRGLELSVAILQAALPGGAVAAVL---ATEYEV-DVELASTAVTLSTVL-SLISLPLFIIL 319 (321)
T ss_pred HHHHHHhCCChHHHHHHHHHHcCChhhHHHHH---HHHhCC-CHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 77777777765433222111 12333333333 333343 334444 44445544 66666665443
No 167
>PRK04125 murein hydrolase regulator LrgA; Provisional
Probab=41.29 E-value=2e+02 Score=27.31 Aligned_cols=42 Identities=14% Similarity=0.083 Sum_probs=19.6
Q ss_pred HHHHHH--HhcccccccccccccccchhhHHHHHHHHHHHHHHHHHH
Q 003798 331 MPFAFA--VVGMYTDVYAMFEFGWSGLSPLFGMIVTGYISKLLGTLI 375 (794)
Q Consensus 331 ~PlfF~--~~G~~~dl~~l~~~~~~~~~~~~~i~~~~~l~K~~~~~l 375 (794)
+|+||+ .+|.-..++.+. .+.|..++.+++..++.=.+.++.
T Consensus 69 m~LfFVPagVGim~~~~ll~---~~~~~Il~~ivvSTllvl~vtg~v 112 (141)
T PRK04125 69 IGFLFVPSGISVINSLGVMS---QYPVQIIGVIIVATILLLACTGLF 112 (141)
T ss_pred HHHHHhhhHhHHHHhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577776 444444555555 333443344443333333333333
No 168
>PF01032 FecCD: FecCD transport family; InterPro: IPR000522 This is a subfamily of bacterial binding-protein-dependent transport systems family, and includes transport system permease proteins involved in the transport across the membrane of several compounds. This entry contains the inner components of this multicomponent transport system.; GO: 0005215 transporter activity, 0016020 membrane; PDB: 4DBL_A 1L7V_B 2QI9_B 2NQ2_A.
Probab=40.81 E-value=4.1e+02 Score=28.76 Aligned_cols=24 Identities=21% Similarity=0.574 Sum_probs=17.6
Q ss_pred HHhhcccCCChhHHHHHHHHhhCc
Q 003798 60 RFLLKPLKQPRVISEMIGGIIVGP 83 (794)
Q Consensus 60 ~~ll~rl~~P~ii~~IlaGiilGP 83 (794)
..+...+|+|+++.-+++|..+|-
T Consensus 35 ~~ii~~~RlPR~l~a~l~G~~La~ 58 (311)
T PF01032_consen 35 QFIIWDLRLPRILAAILVGAALAL 58 (311)
T ss_dssp HHHHCCTCHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHhHHHHHH
Confidence 445667788888888888887763
No 169
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=40.51 E-value=72 Score=30.04 Aligned_cols=60 Identities=13% Similarity=0.143 Sum_probs=45.6
Q ss_pred CChhHHHHHHHHhcCCcEEEecCCCCCCCCCCCccccccc-hhHHHHHhhccC-CCceEEEecCCCC
Q 003798 556 RSMYQNICELALDNKATLIILPFHKEYPNNLEGTQILRRG-VQSVNIKVLSHA-PCSVGVLVDKGNF 620 (794)
Q Consensus 556 ~~m~~dI~~~A~~~~a~lIilp~h~~~~~d~~g~~~~~~~-~~~~n~~vl~~A-pCsVgIlvdRg~~ 620 (794)
+...+.+.+++++++++.||+|...+. | |+...... .+.+.+++-++. +++| .++|..+.
T Consensus 37 ~~~~~~l~~li~~~~i~~iVvGlP~~~--~--G~~~~~~~~v~~f~~~L~~~~~~ipV-~~~DEr~T 98 (135)
T PF03652_consen 37 EKDIEELKKLIEEYQIDGIVVGLPLNM--D--GSESEQARRVRKFAEELKKRFPGIPV-ILVDERLT 98 (135)
T ss_dssp CCCHHHHHHHHHHCCECEEEEEEEBBC--T--SSC-CCHHHHHHHHHHHHHHH-TSEE-EEEECSCS
T ss_pred chHHHHHHHHHHHhCCCEEEEeCCccc--C--CCccHHHHHHHHHHHHHHHhcCCCcE-EEECCChh
Confidence 678999999999999999999998664 3 55332222 888888888886 8888 66776543
No 170
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=40.14 E-value=5.5e+02 Score=28.34 Aligned_cols=87 Identities=20% Similarity=0.101 Sum_probs=50.6
Q ss_pred hhhHHHHHHHhhcCCCCCc-----hhHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccchhhHHHHHHHHHHHHH
Q 003798 296 AIANGPLWLGLVIPDGPPL-----GATLVERTETLIMEIFMPFAFAVVGMYTDVYAMFEFGWSGLSPLFGMIVTGYISKL 370 (794)
Q Consensus 296 ~~~lgaflaGl~i~~~~~~-----~~~l~~kl~~~~~~~~~PlfF~~~G~~~dl~~l~~~~~~~~~~~~~i~~~~~l~K~ 370 (794)
++.+=+.++|+++.--++. ..-+.+-++.+ .....|+-.+.+|..+....... ...+......+++.++.-.
T Consensus 244 nP~~~a~~lgli~~~~~~~~~~~~~~~i~~~~~~l-g~~~~pl~l~~lG~~l~~~~~~~--~~~~~~~~~~~~~rlii~P 320 (385)
T PF03547_consen 244 NPPLIAIILGLIIGLIPPLRPLFFPSFITDSLSYL-GAAAVPLALFVLGASLARGPRKS--ALGWKPSIIAVLVRLIILP 320 (385)
T ss_pred CcHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHH-HhhhHHHHHHHHHHHHhcCCccc--chhhHHHHHHHHHHHHHHH
Confidence 4555555555555432222 24555556665 78889999999999887543220 1223333344566666666
Q ss_pred HHHHHHHHhcCCChH
Q 003798 371 LGTLIPSLLCQMPFR 385 (794)
Q Consensus 371 ~~~~l~~~~~~~~~~ 385 (794)
+.++...+..+++..
T Consensus 321 ~i~~~~~~~~~l~~~ 335 (385)
T PF03547_consen 321 LIGIGIVFLLGLDGD 335 (385)
T ss_pred HHHHHHHHHHCCCHH
Confidence 677777777776544
No 171
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=39.45 E-value=83 Score=32.37 Aligned_cols=61 Identities=15% Similarity=0.109 Sum_probs=48.4
Q ss_pred EEEEeEEeccCC-ChhHHHHHHHHhcCCcEEEecCCCCCCCCCCCccccccc-hhHHHHHhhccCCCceEEEe
Q 003798 545 KFNAFTALAPMR-SMYQNICELALDNKATLIILPFHKEYPNNLEGTQILRRG-VQSVNIKVLSHAPCSVGVLV 615 (794)
Q Consensus 545 ~v~~~~~vs~~~-~m~~dI~~~A~~~~a~lIilp~h~~~~~d~~g~~~~~~~-~~~~n~~vl~~ApCsVgIlv 615 (794)
....+|-++|.+ ...++|.+.+.+-.+|.|++|-. .+.+.. ..++.+++-++.+-+|-+|.
T Consensus 15 ~~~H~tliDP~k~~~~~ei~~~~~~~GTDaImIGGS----------~gvt~~~~~~~v~~ik~~~~lPvilfP 77 (240)
T COG1646 15 GKRHLTLIDPDKTEEADEIAEAAAEAGTDAIMIGGS----------DGVTEENVDNVVEAIKERTDLPVILFP 77 (240)
T ss_pred cceEEEEeCcccccccHHHHHHHHHcCCCEEEECCc----------ccccHHHHHHHHHHHHhhcCCCEEEec
Confidence 345689999999 89999999999999999999943 322322 77888888878888886664
No 172
>COG3199 Predicted inorganic polyphosphate/ATP-NAD kinase [General function prediction only]
Probab=39.19 E-value=1.2e+02 Score=33.21 Aligned_cols=118 Identities=23% Similarity=0.335 Sum_probs=64.7
Q ss_pred ceEEEecCCCCCCCCcccCCCccceEEEEEecCCcc--HHH----HHHHHHHHhcCCCeEEEEEEeeccCCCCCchhhhh
Q 003798 610 SVGVLVDKGNFRNPMHAAGGSMRRHHFVVLFLGGAD--ARE----ALAYADRMVGNLDVSLTVIRFLSFNHEGDDEMEKK 683 (794)
Q Consensus 610 sVgIlvdRg~~~~~~~~~~~~~~~~~I~v~f~GG~d--Dre----AL~~A~rma~~~~v~ltvl~~~~~~~~~~~~~~~~ 683 (794)
.|||+++.-.+.+. |++ ..|.| --| |.....|.-+.-+.+ -..+|+.+.. .
T Consensus 3 ~VGiivNP~AG~g~-----------r~~---lkGaDg~~~e~~~ra~~~v~rfL~~l~~~-~~~~flt~p~--------~ 59 (355)
T COG3199 3 KVGIIVNPIAGRGG-----------RVL---LKGADGLVAEAPKRAIVRVKRFLKKLDAN-GDVEFLTPPG--------P 59 (355)
T ss_pred eeEEEecCcccCCc-----------eee---ccccCcchhhhhHHHHHHHHHHHHhcccc-CceEEEeCCc--------c
Confidence 37888877433211 332 34666 223 355566776665522 2456665432 2
Q ss_pred hHHHHHHHHHhhcCCCCceE-EEEEEe-cChHHHHHHHHhhhccCcccEEEEecccCCCCccccccCCCCCCCccc
Q 003798 684 LDDGLVTWFWVKNESNERVR-YREVVV-RNGAETVASIQAVNDEAYCDLWIVGRYQGINGKLLEGLEAWSEDNELG 757 (794)
Q Consensus 684 ~d~~~l~~~~~~~~~~~~v~-y~e~~v-~~~~~~~~~i~~~~~~~~~DL~iVGr~~~~~~~~~~gl~~w~e~~eLG 757 (794)
..+..+..+..++ ++. |.|..- ...+||..+.|++.+.| .||+++--+.+...-..++. =.+-|-||
T Consensus 60 mG~~~~~~~~~~~----~v~~~~~~~~~tTa~DT~~~~r~~~~~g-VdlIvfaGGDGTarDVa~av--~~~vPvLG 128 (355)
T COG3199 60 MGESLAEASGFKY----RVIRFQESTPRTTAEDTINAVRRMVERG-VDLIVFAGGDGTARDVAEAV--GADVPVLG 128 (355)
T ss_pred cchhHHHhhcCcc----eEEeecccCCCccHHHHHHHHHHHHhcC-ceEEEEeCCCccHHHHHhhc--cCCCceEe
Confidence 2333333333332 333 777665 56789999999998855 89888765554433333333 23455555
No 173
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3. This model is specific for the eukaryotic members members of this family.
Probab=37.69 E-value=1.8e+02 Score=34.35 Aligned_cols=74 Identities=15% Similarity=0.211 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHhcccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHH---------hcCCChHHHHHHHHHHHhH
Q 003798 327 MEIFMPFAFAVVGMYTDVYAMFEFGWSGLSPLFGMIVTGYISKLLGTLIPSL---------LCQMPFRDSLTLSLMMSLR 397 (794)
Q Consensus 327 ~~~~~PlfF~~~G~~~dl~~l~~~~~~~~~~~~~i~~~~~l~K~~~~~l~~~---------~~~~~~~e~~~lgl~m~~k 397 (794)
..+++|....-.|..+|...+. ..+..++.+.+.+.+.-.+.+-...+ ..++++.+++.+|.++++.
T Consensus 69 ~~~~LPpIlFe~g~~l~~~~f~----~n~~~Il~lAv~Gvlit~~~ig~~l~~~~~~~~~~~~~l~~~~allfGAiiSaT 144 (559)
T TIGR00840 69 FLYLLPPIVLDAGYFMPQRNFF----ENLGSILIFAVVGTLINAFVIGLSLYGICLIGGFGSIDIGLLDNLLFGSLISAV 144 (559)
T ss_pred HHHHHHHHHHHHHhcCCHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCHHHHHHHhHHhcCC
Confidence 4567787777889999988886 23333333333333332222222222 1256999999999999998
Q ss_pred HHHHHHH
Q 003798 398 GQVELLL 404 (794)
Q Consensus 398 G~~~l~~ 404 (794)
.-+.+.-
T Consensus 145 DPVAVla 151 (559)
T TIGR00840 145 DPVAVLA 151 (559)
T ss_pred chHHHHH
Confidence 8876653
No 174
>PRK09765 PTS system 2-O-a-mannosyl-D-glycerate specific transporter subunit IIABC; Provisional
Probab=36.92 E-value=6.3e+02 Score=30.42 Aligned_cols=24 Identities=13% Similarity=0.295 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 003798 240 LISLVILLAFICIAVRRTMLWIVH 263 (794)
Q Consensus 240 ~~~~~~~~~~~~~v~r~~~~~i~~ 263 (794)
+++.++.+.++++++.|...|+..
T Consensus 419 llt~li~~~l~~~viGp~~~~i~~ 442 (631)
T PRK09765 419 VLGTLGAGSLMLFVVGEPVAWINN 442 (631)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555566666666666654
No 175
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=36.50 E-value=3.3e+02 Score=27.04 Aligned_cols=50 Identities=14% Similarity=0.103 Sum_probs=32.8
Q ss_pred cCCCCCCccHHHHHHHHHHHHHHHHHHHHhhcccCCChhHHHHHHHHhhC
Q 003798 33 FGESPLDSPFLLVLFEIVFIICTTSIIRFLLKPLKQPRVISEMIGGIIVG 82 (794)
Q Consensus 33 ~g~~pl~~~l~~~l~~i~lil~~~~l~~~ll~rl~~P~ii~~IlaGiilG 82 (794)
+++||+---+-.-++.++++-+++.+..++-+.-..-.+|..++.|++-|
T Consensus 89 kNtdp~lm~lDssLl~lg~~aLlsgitaff~~nA~~~GlItlll~a~vgG 138 (226)
T COG4858 89 KNTDPWLMWLDSSLLFLGAMALLSGITAFFQKNAQVYGLITLLLTAVVGG 138 (226)
T ss_pred cCCCceEEEecccHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHhhh
Confidence 46778433333345555666667777777777766667778888887766
No 176
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [].
Probab=35.72 E-value=5e+02 Score=26.58 Aligned_cols=64 Identities=17% Similarity=0.108 Sum_probs=38.2
Q ss_pred hccChhHHHhcCchhhHHHHHHHHHHHHHHHHHHHHhhccCCcchhhHHHHHHHHHHH-hhccHHHHHHHHHhcC
Q 003798 122 IKMDFTLLKRCGRKHVYIAVTGVIIPTATSAAVAFLTRKSMDPELAKVSSIGAITTSL-AVTSFPVLNPILKDLN 195 (794)
Q Consensus 122 le~d~~~l~~~~~~~~~ia~~~~~~p~~l~~~~~~~l~~~~~~~~~~~~~~l~lg~~l-s~Ts~~vv~~iL~el~ 195 (794)
+-=+.+.+||+++....--..+.++.+..+..++++++... .+..+.+- |+| .|+...+-+++|
T Consensus 66 LY~~~~~l~~~~~~il~~~~~g~~~~~~~~~~l~~~lgl~~---------~~~~Sl~pkSVT-tpiAi~is~~iG 130 (215)
T PF04172_consen 66 LYRQRRLLKKNWIPILVGVLVGSLVSIFSAVLLARLLGLSP---------EIILSLAPKSVT-TPIAIEISEQIG 130 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCH---------HHHHHHHHHHhh-HHHHHHHHHHhC
Confidence 33456778888888777777777777777777777665421 22222222 333 566666655554
No 177
>KOG2718 consensus Na+-bile acid cotransporter [Inorganic ion transport and metabolism]
Probab=33.66 E-value=3.3e+02 Score=30.27 Aligned_cols=32 Identities=22% Similarity=0.307 Sum_probs=27.2
Q ss_pred HHHHHHHHHHhhccChhHHHhcCchhhHHHHH
Q 003798 111 MAFMYFMFIAGIKMDFTLLKRCGRKHVYIAVT 142 (794)
Q Consensus 111 lgl~~llF~~Gle~d~~~l~~~~~~~~~ia~~ 142 (794)
.|+.+.++..|.+.|++.+++..++...+++.
T Consensus 117 ~gl~~~~ls~g~~~~~~~~~~~~~rP~~~~lG 148 (371)
T KOG2718|consen 117 PGLLSNMLSFGIKLDMDLFAGMIKRPTPLALG 148 (371)
T ss_pred cHHHHHHHHHhcCccHHHHhhHhhCCcceeeh
Confidence 67888899999999999999988888766543
No 178
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=33.66 E-value=5.6e+02 Score=26.55 Aligned_cols=42 Identities=17% Similarity=0.006 Sum_probs=28.9
Q ss_pred HHhhccChhHHHhcCchhhHHHHHHHHHHHHHHHHHHHHhhc
Q 003798 119 IAGIKMDFTLLKRCGRKHVYIAVTGVIIPTATSAAVAFLTRK 160 (794)
Q Consensus 119 ~~Gle~d~~~l~~~~~~~~~ia~~~~~~p~~l~~~~~~~l~~ 160 (794)
..-+=-+.+.+||+++....-.+.+.++.++.+..++.+++.
T Consensus 79 AvPLY~q~~~lk~~~~~Il~~~~vG~~~~i~s~~~la~~lgl 120 (232)
T PRK04288 79 AIPLYKKRDVLKKYWWQILGGIVVGSVCSVLIIYLVAKLIQL 120 (232)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCc
Confidence 334445677888888877777777777777777777776654
No 179
>PF03977 OAD_beta: Na+-transporting oxaloacetate decarboxylase beta subunit; InterPro: IPR005661 Members of this family are integral membrane proteins. The decarboxylation reactions they catalyse are coupled to the vectorial transport of Na+ across the cytoplasmic membrane, thereby creating a sodium ion motive force that is used for ATP synthesis [].; GO: 0016829 lyase activity, 0006814 sodium ion transport
Probab=33.00 E-value=6.9e+02 Score=27.39 Aligned_cols=248 Identities=17% Similarity=0.132 Sum_probs=116.5
Q ss_pred HHHHHHHHHHHHHHhhcccCCChhHHHHHHHHhhCccccCCchhhhhccCCCCcHHHHHHHHHHHH------HHHHHHHh
Q 003798 48 EIVFIICTTSIIRFLLKPLKQPRVISEMIGGIIVGPSILGRNKKFAEAMLPDNSQLVVRSVGIMAF------MYFMFIAG 121 (794)
Q Consensus 48 ~i~lil~~~~l~~~ll~rl~~P~ii~~IlaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl------~~llF~~G 121 (794)
++..+++...+++.-.||---|.+.-.|-.|+++.+.-+.-.. +..........+..+-+.|+ .++.+-+|
T Consensus 4 ~~vMi~vg~~liYLai~k~~EPlLLlPigfG~il~N~P~~~~~---~~~~~~~~~g~l~~~~~~gi~~~l~P~LIF~GIG 80 (360)
T PF03977_consen 4 NIVMILVGFLLIYLAIKKKYEPLLLLPIGFGMILVNIPLSGLM---DQPVGGGEIGGLQPIYYFGISNGLFPPLIFMGIG 80 (360)
T ss_pred HHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHhcCchhhc---ccccccCCCChHHHHHHHhhhcchhhHHHHHHHh
Confidence 4445555555556666776779999999999999753221110 00000001122332322222 23445677
Q ss_pred hccChhHHHhcCchhhHHHHHHHHHHHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHhhccHHHHHHHHHhcCccCChh
Q 003798 122 IKMDFTLLKRCGRKHVYIAVTGVIIPTATSAAVAFLTRKSMDPELAKVSSIGAITTSLAVTSFPVLNPILKDLNLLSSEM 201 (794)
Q Consensus 122 le~d~~~l~~~~~~~~~ia~~~~~~p~~l~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~l~~s~~ 201 (794)
--+|+.-+..+.|..+.-+..++-+ ..++..+.+++... .++..+|++-..=.+..+. ...++.+.-+
T Consensus 81 AmtDFgpllanP~~~llGaaAQ~Gi--f~t~~~A~~lGf~~-------~eAAsIgIIGgADGPtsIf---~s~~LAp~Ll 148 (360)
T PF03977_consen 81 AMTDFGPLLANPKTLLLGAAAQFGI--FATFLGAILLGFTP-------KEAASIGIIGGADGPTSIF---VSSKLAPHLL 148 (360)
T ss_pred HHHhhHHHHhCHHHHHHHHHHHHhH--HHHHHHHHHhCCCH-------HHhhHhhhcccCCCcHHHH---HHHhhhHHHH
Confidence 7899999999988855444433322 12223333444322 4555555544332221111 1112222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH----Hh--CCCCCcccc-h
Q 003798 202 GRMAIVTAVIGDAIGINIVIAFEAAKQGEGDSVDAVWYLISLVILLAFICIAVRRTMLWIV----HK--TPVGKPVSQ-G 274 (794)
Q Consensus 202 g~l~ls~a~v~D~~~~ill~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~r~~~~~i~----~~--~~~~~~~~e-~ 274 (794)
|-+++++ . .+...+-.+-+|+++-+. |+ .++.+++++ .
T Consensus 149 gpIaVaA--------Y---------------------------sYMaLvPiiqPpimklLttkkeR~I~M~~~r~Vsk~e 193 (360)
T PF03977_consen 149 GPIAVAA--------Y---------------------------SYMALVPIIQPPIMKLLTTKKERKIRMKQLRPVSKTE 193 (360)
T ss_pred HHHHHHH--------H---------------------------HHHHHHhhhhhHHHHHhcCHHHHhccCCCCCCCChHH
Confidence 3222111 0 012222333344444332 11 122233332 2
Q ss_pred HHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHhcccccccccc
Q 003798 275 YIVGILLGVLVMGFLTDMFGMAIANGPLWLGLVIPDGPPLGATLVERTETLIMEIFMPFAFAVVGMYTDVYAMF 348 (794)
Q Consensus 275 ~~~~il~~~l~~~~~ae~~G~~~~lgaflaGl~i~~~~~~~~~l~~kl~~~~~~~~~PlfF~~~G~~~dl~~l~ 348 (794)
.+.+-+....+++.+. =.-.+++|.+++|-.+.+. ...+++.+..+.-..++..-+.=..+|...+-+.+.
T Consensus 194 kiiFpivv~~~~~ll~--P~a~pLig~Lm~Gnl~rEs-gv~~rLs~taqn~l~nivTi~LGl~vGat~~a~~fL 264 (360)
T PF03977_consen 194 KIIFPIVVTILVGLLL--PSAAPLIGMLMFGNLLRES-GVVERLSKTAQNELMNIVTIFLGLTVGATMTAETFL 264 (360)
T ss_pred HHHHHHHHHHHHHHHc--cchHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHhc
Confidence 3445455444444431 2346899999999999884 333444444443333333333445677777765554
No 180
>PF10136 SpecificRecomb: Site-specific recombinase; InterPro: IPR011385 This group represents a site-specific recombinase Gcr. Please see the following relevant reference: [].
Probab=32.96 E-value=2.1e+02 Score=34.36 Aligned_cols=28 Identities=21% Similarity=0.290 Sum_probs=17.6
Q ss_pred cccCCCCCCccHHHHHHHHHHHHHHHHHH
Q 003798 31 IFFGESPLDSPFLLVLFEIVFIICTTSII 59 (794)
Q Consensus 31 ~~~g~~pl~~~l~~~l~~i~lil~~~~l~ 59 (794)
.++.-||+ .+.+.+--..++.++++.++
T Consensus 459 ~L~sl~p~-s~al~~AAiaGV~LF~SglI 486 (643)
T PF10136_consen 459 LLHSLDPF-SPALLYAAIAGVWLFLSGLI 486 (643)
T ss_pred HHHhcCcc-ccHHHHHHHHHHHHHHHHHH
Confidence 34568899 56656666666666665554
No 181
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]
Probab=32.78 E-value=1.5e+02 Score=31.45 Aligned_cols=56 Identities=14% Similarity=0.095 Sum_probs=42.0
Q ss_pred eEEEEEecCCccHHHHHHHHHHHhcCCCeEEEEEEeeccCCCCCchhhhhhHHHHHHHHHhhc
Q 003798 634 HHFVVLFLGGADAREALAYADRMVGNLDVSLTVIRFLSFNHEGDDEMEKKLDDGLVTWFWVKN 696 (794)
Q Consensus 634 ~~I~v~f~GG~dDreAL~~A~rma~~~~v~ltvl~~~~~~~~~~~~~~~~~d~~~l~~~~~~~ 696 (794)
++|+|-+.||+|.--+|.+..++.++ ..+++++|...-.. +.+.+.+..+++....
T Consensus 22 ~~ilVavSGGkDS~~ll~~L~~l~~~--~~~~a~~Vd~~~~~-----~~~~~~~~~~~~~~~~ 77 (298)
T COG0037 22 YKILVAVSGGKDSLALLHLLKELGRR--IEVEAVHVDHGLRG-----YSDQEAELVEKLCEKL 77 (298)
T ss_pred CeEEEEeCCChHHHHHHHHHHHhccC--ceEEEEEecCCCCC-----ccchHHHHHHHHHHHh
Confidence 59999999999999999999999988 89999998754221 1134455566665544
No 182
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=31.28 E-value=3.5e+02 Score=24.71 Aligned_cols=84 Identities=15% Similarity=0.149 Sum_probs=47.6
Q ss_pred ceEEEEEEeeecCCCcccccccccc-CC--CCCCCcchHHHHHHHHhhhhc-CceEEEEeEEeccCCChhHHHHHHHHhc
Q 003798 494 FSIYSLHLIELIGRGIPLLVDYENE-EH--SPEYTNDDAIHNALKLYSETR-GELKFNAFTALAPMRSMYQNICELALDN 569 (794)
Q Consensus 494 ~~v~~lhLvel~~r~~~~~~~~~~~-~~--~~~~~~~~~i~~af~~~~~~~-~~v~v~~~~~vs~~~~m~~dI~~~A~~~ 569 (794)
-.|.-+|++|.++- .+-+..++-- .. .......+...+-++...+.. ..+-+..-. .+..+.+++.+.|+++
T Consensus 23 r~V~~v~v~e~~d~-~~~l~~gElvlttg~~~~~~~~~~~~~~i~~L~~~~~agL~i~~~~---~~~~iP~~~i~~A~~~ 98 (123)
T PF07905_consen 23 RPVRWVHVMEAPDP-SDWLRGGELVLTTGYALRDDDEEELREFIRELAEKGAAGLGIKTGR---YLDEIPEEIIELADEL 98 (123)
T ss_pred CcEEEEEEeecCCH-HHhCCCCeEEEECCcccCCCCHHHHHHHHHHHHHCCCeEEEEeccC---ccccCCHHHHHHHHHc
Confidence 35778888888752 2222222110 00 011111223555556665543 334433221 2347889999999999
Q ss_pred CCcEEEecCCCC
Q 003798 570 KATLIILPFHKE 581 (794)
Q Consensus 570 ~a~lIilp~h~~ 581 (794)
+-.++.+||+-+
T Consensus 99 ~lPli~ip~~~~ 110 (123)
T PF07905_consen 99 GLPLIEIPWEVP 110 (123)
T ss_pred CCCEEEeCCCCC
Confidence 999999999743
No 183
>PRK01821 hypothetical protein; Provisional
Probab=30.89 E-value=4.6e+02 Score=24.68 Aligned_cols=103 Identities=15% Similarity=0.093 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccCCCh---hHHHHHHHHhhCccccCCch-hhhhccCCCCcHHHHHHHHHHHHHHHHH
Q 003798 43 LLVLFEIVFIICTTSIIRFLLKPLKQPR---VISEMIGGIIVGPSILGRNK-KFAEAMLPDNSQLVVRSVGIMAFMYFMF 118 (794)
Q Consensus 43 ~~~l~~i~lil~~~~l~~~ll~rl~~P~---ii~~IlaGiilGP~~lg~~~-~~~~~lfp~~~~~~l~~l~~lgl~~llF 118 (794)
..++.|+.+++.+..+...+.+-+++|- ++|.++.=+.+ .++.++ +.. ....--.++++++.|+==
T Consensus 9 ~~~l~~l~ill~~~~~Ge~i~~~l~lpiPGsViGmlLLf~~L---~~~~vk~~~v-------~~~a~~LL~~m~LfFVPa 78 (133)
T PRK01821 9 WQYLRAFVLIYACLYAGIFIASLLPITIPGSIIGMLILFVLL---ALQILPAKWV-------KPGCSLLIRYMALLFVPI 78 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHH---HhCCcCHHHH-------HHHHHHHHHHHHHHHhhh
Confidence 3467788888887777777777777653 23332211111 123321 000 011122345555555545
Q ss_pred HHhhccChhHHHhcCchhhHHHHHHHHHHHHHHHHHH
Q 003798 119 IAGIKMDFTLLKRCGRKHVYIAVTGVIIPTATSAAVA 155 (794)
Q Consensus 119 ~~Gle~d~~~l~~~~~~~~~ia~~~~~~p~~l~~~~~ 155 (794)
.+|+=...+.+++++.+....-+.+.++.++.+..+.
T Consensus 79 ~VGim~~~~ll~~~~~~il~~ivvST~lvl~vtg~~~ 115 (133)
T PRK01821 79 GVGVMQYYDLLRAQFGPIVVSCIVSTLVVLLVVGWSS 115 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666777766666655555555555444433
No 184
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]
Probab=30.77 E-value=4.8e+02 Score=32.25 Aligned_cols=65 Identities=8% Similarity=0.107 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHhhccChhHHHhcCchhhHHHHHHHHHHHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHhhc
Q 003798 110 IMAFMYFMFIAGIKMDFTLLKRCGRKHVYIAVTGVIIPTATSAAVAFLTRKSMDPELAKVSSIGAITTSLAVT 182 (794)
Q Consensus 110 ~lgl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~~~p~~l~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~T 182 (794)
.+-+-++....|++.|...+.+ +.............-++.+.+.+.+..-. +..++.+|.+++.-
T Consensus 313 ~~llPl~~~~~G~k~di~~i~~-~~~~~~~i~~~~~~K~l~t~~~sl~~k~p-------~~~~l~l~~lm~~k 377 (769)
T KOG1650|consen 313 GLLLPLYFAISGLKTDISRINK-WGALIRTILIFGAVKLLSTLGTSLYCKLP-------LRDSLALGLLMSTK 377 (769)
T ss_pred HHHHHHHHHhhccceeHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCc-------hhHHHHHHHHHHhh
Confidence 4555667778899999999988 22222222223333344444444433322 25667777776654
No 185
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=30.68 E-value=82 Score=29.30 Aligned_cols=35 Identities=31% Similarity=0.367 Sum_probs=27.5
Q ss_pred EEeEEeccCCChhHHHHHHHHhcCCcEEEecCCCC
Q 003798 547 NAFTALAPMRSMYQNICELALDNKATLIILPFHKE 581 (794)
Q Consensus 547 ~~~~~vs~~~~m~~dI~~~A~~~~a~lIilp~h~~ 581 (794)
.-..++-|...||..|.++|++-++|++|-|....
T Consensus 72 ~lIYSiRPP~El~~~il~lA~~v~adlii~pL~~e 106 (127)
T PF03686_consen 72 DLIYSIRPPPELQPPILELAKKVGADLIIRPLGGE 106 (127)
T ss_dssp EEEEEES--TTSHHHHHHHHHHHT-EEEEE-BTTB
T ss_pred cEEEEeCCChHHhHHHHHHHHHhCCCEEEECCCCC
Confidence 34778889999999999999999999999999854
No 186
>PRK05274 2-keto-3-deoxygluconate permease; Provisional
Probab=29.97 E-value=7.7e+02 Score=26.99 Aligned_cols=86 Identities=16% Similarity=0.247 Sum_probs=53.9
Q ss_pred HHhhcccCCChhHH---HHHHHHhhCccccCCchhhhhccCCCCcHHHHHHHHHHHHHHHHHHHhhccChhHHHhcCchh
Q 003798 60 RFLLKPLKQPRVIS---EMIGGIIVGPSILGRNKKFAEAMLPDNSQLVVRSVGIMAFMYFMFIAGIKMDFTLLKRCGRKH 136 (794)
Q Consensus 60 ~~ll~rl~~P~ii~---~IlaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~~~ 136 (794)
..-+.+++.|.+++ -++.|+++|. +. +.+.+..-| -.++-+-+..|..|..+++..+.+.+-..
T Consensus 162 aagla~~p~~~li~allplliG~~lgn--l~--~~l~~~~~~---------Gi~~lLp~~~~~lG~~l~lq~i~~~G~~G 228 (326)
T PRK05274 162 AAGLASFPPPALVGAVLPLLVGFILGN--LD--PELRQFLGK---------AVPVLIPFFAFALGNGIDLGTIITAGLSG 228 (326)
T ss_pred hhCcccCCCchhhHHHHHHHHHHHHHh--HH--HhhHHHhcC---------CcEEEHHHHHHHHhcceeHhHHHhcCCcc
Confidence 33445566665555 4666777776 11 111111111 11113445667799999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHh
Q 003798 137 VYIAVTGVIIPTATSAAVAFLT 158 (794)
Q Consensus 137 ~~ia~~~~~~p~~l~~~~~~~l 158 (794)
..+++..++++..+++....++
T Consensus 229 ilL~~~~~~~t~~~~~~~~Rl~ 250 (326)
T PRK05274 229 ILLGVAVVAVTGIPLYLADRLI 250 (326)
T ss_pred hhhhhhHhhccchhhHhHhhee
Confidence 9888888888877666666655
No 187
>PRK12933 secD preprotein translocase subunit SecD; Reviewed
Probab=29.95 E-value=1e+03 Score=28.42 Aligned_cols=57 Identities=14% Similarity=0.053 Sum_probs=27.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHh-hccCCcchhhHHHHHHHHHHHhhccHHHHH-HHHHhcC
Q 003798 136 HVYIAVTGVIIPTATSAAVAFLT-RKSMDPELAKVSSIGAITTSLAVTSFPVLN-PILKDLN 195 (794)
Q Consensus 136 ~~~ia~~~~~~p~~l~~~~~~~l-~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~-~iL~el~ 195 (794)
...++.++..+.+++.+++..++ +.... .....++.+++-+++=+.-++. ++-.|++
T Consensus 464 ~glva~iAL~~~l~l~l~vmsll~G~tLt---LpgIAGiILtIGmaVDanIVI~ERIrEel~ 522 (604)
T PRK12933 464 LGWVANVALIANMVCLFGLLALIPGAVLT---LPGIAGLVLTVGMAVDTNVLIFERIKDKLK 522 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCccc---HHHHHHHHHHHHhhccCcEEEehHHHHHHH
Confidence 34455566666666666666665 44332 0123344444444444434444 4444444
No 188
>COG4827 Predicted transporter [General function prediction only]
Probab=29.80 E-value=4.3e+02 Score=26.74 Aligned_cols=47 Identities=15% Similarity=0.082 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHhhccChhHHHh--cCchhhHHHHHHHHHHHHHHHH
Q 003798 107 SVGIMAFMYFMFIAGIKMDFTLLKR--CGRKHVYIAVTGVIIPTATSAA 153 (794)
Q Consensus 107 ~l~~lgl~~llF~~Gle~d~~~l~~--~~~~~~~ia~~~~~~p~~l~~~ 153 (794)
..-..|..+.+|..|+++-+..=.. ..|++..++....+....++..
T Consensus 9 l~~~~gIl~~ilIfGlKtGlg~GFag~~~r~a~~Iaa~yg~li~a~~gl 57 (239)
T COG4827 9 LTYVIGILIGILIFGLKTGLGCGFAGITTREALTIAASYGFLILAFGGL 57 (239)
T ss_pred HHHHHHHHHHHHHHhhhhccccccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 3447788888899888876543221 2234555555444333333333
No 189
>PRK01658 holin-like protein; Validated
Probab=29.01 E-value=4.7e+02 Score=24.18 Aligned_cols=105 Identities=11% Similarity=0.117 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccCCCh---hHHHHHHHHhhCccccCCch-hhhhccCCCCcHHHHHHHHHHHHHHHHH
Q 003798 43 LLVLFEIVFIICTTSIIRFLLKPLKQPR---VISEMIGGIIVGPSILGRNK-KFAEAMLPDNSQLVVRSVGIMAFMYFMF 118 (794)
Q Consensus 43 ~~~l~~i~lil~~~~l~~~ll~rl~~P~---ii~~IlaGiilGP~~lg~~~-~~~~~lfp~~~~~~l~~l~~lgl~~llF 118 (794)
..++.|+.+++.+..+...+.+-+++|- ++|.++. +.-..++.++ +.. ....--.+.++++.|+==
T Consensus 4 ~~~l~~l~il~~~~~~G~~i~~~l~lpiPGsViGmlLL---~~~L~~~~ik~~~v-------~~~a~~Ll~~m~llFVPa 73 (122)
T PRK01658 4 VKLLVQIALLYVFALVGTWIQEQLHLPIPGSIIGIFLL---LLLLSFKILKLKWI-------ELGAETLLAELPLFFIPS 73 (122)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHH---HHHHHhCCcCHHHH-------HHHHHHHHHHHHHHHHHh
Confidence 3567888888887777777777666553 3333321 1111123221 000 011122345555555555
Q ss_pred HHhhccChhHHHhcCchhhHHHHHHHHHHHHHHHHHHHH
Q 003798 119 IAGIKMDFTLLKRCGRKHVYIAVTGVIIPTATSAAVAFL 157 (794)
Q Consensus 119 ~~Gle~d~~~l~~~~~~~~~ia~~~~~~p~~l~~~~~~~ 157 (794)
.+|+=-..+.+++++-+.....+.+.++.++.+..+..+
T Consensus 74 ~VGi~~~~~ll~~~~~~il~~ivvsT~l~l~vtg~~~~~ 112 (122)
T PRK01658 74 AVGVMNYGDFLSSKGISLFLVVVISTFVVMIVTGYLTQL 112 (122)
T ss_pred hhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667766677777777777666666666666555444433
No 190
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=28.67 E-value=56 Score=35.29 Aligned_cols=55 Identities=16% Similarity=0.255 Sum_probs=38.8
Q ss_pred EEEEEEecChHHHHHHHHhhhccCcccEEEEecccCCCCccccccCCCCCCCccchh
Q 003798 703 RYREVVVRNGAETVASIQAVNDEAYCDLWIVGRYQGINGKLLEGLEAWSEDNELGVI 759 (794)
Q Consensus 703 ~y~e~~v~~~~~~~~~i~~~~~~~~~DL~iVGr~~~~~~~~~~gl~~w~e~~eLG~i 759 (794)
.+.+...+...|..+..+++..++ ||++|++-+.|.-+....||.+-...| ||+|
T Consensus 35 ~~~~~~t~~~g~a~~~a~~a~~~~-~D~via~GGDGTv~evingl~~~~~~~-Lgil 89 (301)
T COG1597 35 ELSVRVTEEAGDAIEIAREAAVEG-YDTVIAAGGDGTVNEVANGLAGTDDPP-LGIL 89 (301)
T ss_pred eEEEEEeecCccHHHHHHHHHhcC-CCEEEEecCcchHHHHHHHHhcCCCCc-eEEe
Confidence 344555555556777777766554 999999998887777788887766666 7655
No 191
>PF01507 PAPS_reduct: Phosphoadenosine phosphosulfate reductase family; InterPro: IPR002500 This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases []. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) [, ]. It is also found in NodP nodulation protein P from Rhizobium meliloti (Sinorhizobium meliloti) which has ATP sulphurylase activity (sulphate adenylate transferase) [].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2GOY_C 3G5A_C 3G6K_D 3G59_A 3FWK_A 2WSI_A 2OQ2_B 1SUR_A 2O8V_A 1ZUN_A.
Probab=28.16 E-value=1.3e+02 Score=28.87 Aligned_cols=51 Identities=22% Similarity=0.124 Sum_probs=32.5
Q ss_pred EEEEEecCCccHHHHHHHHHHHhcCCCeEEEEEEeeccCCCCCchhhhhhHHHHHHHHHhhc
Q 003798 635 HFVVLFLGGADAREALAYADRMVGNLDVSLTVIRFLSFNHEGDDEMEKKLDDGLVTWFWVKN 696 (794)
Q Consensus 635 ~I~v~f~GG~dDreAL~~A~rma~~~~v~ltvl~~~~~~~~~~~~~~~~~d~~~l~~~~~~~ 696 (794)
++++-|.||+|+.-.|.++.+...+- .++++.+.. |-..-.++++++..+.
T Consensus 1 ~i~vs~SGGKDS~v~l~l~~~~~~~~----~vv~~dtg~-------e~p~t~~~~~~~~~~~ 51 (174)
T PF01507_consen 1 NIVVSFSGGKDSTVMLHLAREAGRKV----PVVFIDTGY-------EFPETYEFVDELAKRY 51 (174)
T ss_dssp SEEEE--SSHHHHHHHHHHHHHHTTC----EEEEEE-ST-------B-HHHHHHHHHHHHHT
T ss_pred CeEEEecCCHHHHHHHHHHHHhcCCC----cEEEEecCc-------cCHHHHHHHHHHHhhh
Confidence 47889999999999999999998773 556553321 1122335666666554
No 192
>cd01713 PAPS_reductase This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases. A highly modified version of the P loop, the fingerprint peptide of mononucleotide-binding proteins, is present in the active site of the protein, which appears to be a positively charged cleft containing a number of conserved arginine and lysine residues. Although PAPS reductase has no ATPase activity, it shows a striking similarity to the structure of the ATP pyrophosphatase (ATP PPase) domain of GMP synthetase, indicating that both enzyme families have evolved from a common ancestral nucleotide-binding fold. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) . It is also found in NodP nodulation protein P from Rhizobium meliloti which has ATP sulphurylase acti
Probab=27.70 E-value=1.1e+02 Score=28.91 Aligned_cols=36 Identities=31% Similarity=0.364 Sum_probs=27.2
Q ss_pred EEEEEecCCccHHHHHHHHHHHhcCCCeEEEEEEeec
Q 003798 635 HFVVLFLGGADAREALAYADRMVGNLDVSLTVIRFLS 671 (794)
Q Consensus 635 ~I~v~f~GG~dDreAL~~A~rma~~~~v~ltvl~~~~ 671 (794)
+|++-|.||+|.--.|.++.+...+. -.+.++++..
T Consensus 1 ~i~v~~SGGkDS~~ll~l~~~~~~~~-~~~~~v~~dt 36 (173)
T cd01713 1 NVVVSFSGGKDSTVLLHLALKALPEL-KPVPVIFLDT 36 (173)
T ss_pred CeEEEecCChHHHHHHHHHHHhcccc-cCceEEEeCC
Confidence 47899999999999999998876542 3456666543
No 193
>PF06181 DUF989: Protein of unknown function (DUF989); InterPro: IPR010389 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=27.67 E-value=7.8e+02 Score=26.35 Aligned_cols=41 Identities=10% Similarity=0.017 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHhcccccccccccccccchhhHHHHHHHHHHHHH
Q 003798 327 MEIFMPFAFAVVGMYTDVYAMFEFGWSGLSPLFGMIVTGYISKL 370 (794)
Q Consensus 327 ~~~~~PlfF~~~G~~~dl~~l~~~~~~~~~~~~~i~~~~~l~K~ 370 (794)
+-+-+|+.|.++.-...+..-. ...|....++.+.+.+.|-
T Consensus 229 ~ylTlPvLf~MiSnHyp~~y~~---~~nWlil~li~~~g~~IRh 269 (300)
T PF06181_consen 229 NYLTLPVLFLMISNHYPMTYGH---PYNWLILALIMLAGALIRH 269 (300)
T ss_pred ceeHHHHHHHHHhccCcccccc---chhHHHHHHHHHHHHHHHH
Confidence 4567899998865444433222 5577666666666555554
No 194
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=27.48 E-value=1e+02 Score=34.80 Aligned_cols=52 Identities=25% Similarity=0.275 Sum_probs=30.1
Q ss_pred HHHHHHhhcCCCCceEEEEEEec--ChHHHHHHHHhhhccCcccEEEEecccCC
Q 003798 688 LVTWFWVKNESNERVRYREVVVR--NGAETVASIQAVNDEAYCDLWIVGRYQGI 739 (794)
Q Consensus 688 ~l~~~~~~~~~~~~v~y~e~~v~--~~~~~~~~i~~~~~~~~~DL~iVGr~~~~ 739 (794)
.+..++.+...-+-+.|...+-. .+.|++++|+..+..+.+|.+||||++|.
T Consensus 152 Il~~~~rR~P~~~viv~pt~VQG~~A~~eIv~aI~~an~~~~~DvlIVaRGGGS 205 (440)
T COG1570 152 ILHTLSRRFPSVEVIVYPTLVQGEGAAEEIVEAIERANQRGDVDVLIVARGGGS 205 (440)
T ss_pred HHHHHHhhCCCCeEEEEeccccCCCcHHHHHHHHHHhhccCCCCEEEEecCcch
Confidence 44444444433333334333322 34677788877655433899999999864
No 195
>PF02355 SecD_SecF: Protein export membrane protein; InterPro: IPR022813 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone protein (SecB), an ATPase (SecA), an integral membrane complex (SecCY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. The chaperone protein SecB [] is a highly acidic homotetrameric protein that exists as a "dimer of dimers" in the bacterial cytoplasm. SecB maintains preproteins in an unfolded state after translation, and targets these to the peripheral membrane protein ATPase SecA for secretion []. Together with SecY and SecG, SecE forms a multimeric channel through which preproteins are translocated, using both proton motive forces and ATP-driven secretion. The latter is mediated by SecA. The structure of the Escherichia coli SecYEG assembly revealed a sandwich of two membranes interacting through the extensive cytoplasmic domains []. Each membrane is composed of dimers of SecYEG. The monomeric complex contains 15 transmembrane helices. The SecD and SecF equivalents of the Gram-positive bacterium Bacillus subtilis are jointly present in one polypeptide, denoted SecDF, that is required to maintain a high capacity for protein secretion. Unlike the SecD subunit of the pre-protein translocase of E. coli, SecDF of B. subtilis was not required for the release of a mature secretory protein from the membrane, indicating that SecDF is involved in earlier translocation steps []. Comparison with SecD and SecF proteins from other organisms revealed the presence of 10 conserved regions in SecDF, some of which appear to be important for SecDF function. Interestingly, the SecDF protein of B. subtilis has 12 putative transmembrane domains. Thus, SecDF does not only show sequence similarity but also structural similarity to secondary solute transporters []. This entry represents bacterial SecD and SecF protein export membrane proteins and their archaeal homologues []. It is found in association with PF07549 from PFAM SecD and SecF proteins are part of the multimeric protein export complex comprising SecA, D, E, F, G, Y, and YajC []. SecD and SecF are required to maintain a proton motive force []. ; PDB: 3AQP_A 2RRN_A 3AQO_B.
Probab=27.46 E-value=6.3e+02 Score=25.18 Aligned_cols=26 Identities=23% Similarity=0.410 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003798 239 YLISLVILLAFICIAVRRTMLWIVHK 264 (794)
Q Consensus 239 ~~~~~~~~~~~~~~v~r~~~~~i~~~ 264 (794)
.+++.+.-.....++.+|+..|+.++
T Consensus 164 l~iGvi~~~~ss~~ia~~l~~~l~~~ 189 (189)
T PF02355_consen 164 LIIGVIIGTYSSLFIARPLLYWLVKK 189 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 34444444455667788888887654
No 196
>COG3329 Predicted permease [General function prediction only]
Probab=27.29 E-value=8.2e+02 Score=26.45 Aligned_cols=46 Identities=22% Similarity=0.226 Sum_probs=19.0
Q ss_pred HHHHHHhhccChhHHHhcCchhhHHHHHHHHHHHHHHHHHHHHhhc
Q 003798 115 YFMFIAGIKMDFTLLKRCGRKHVYIAVTGVIIPTATSAAVAFLTRK 160 (794)
Q Consensus 115 ~llF~~Gle~d~~~l~~~~~~~~~ia~~~~~~p~~l~~~~~~~l~~ 160 (794)
++|+-+|++=-.+.-..+....+.-...++.+.+++++...+++.+
T Consensus 49 yLL~aIG~kGGveir~snl~a~v~~~~~~~aL~~li~~ia~f~l~k 94 (372)
T COG3329 49 YLLLAIGFKGGVEIRNSNLTAMVLPVALGVALGFLIVFIAYFLLRK 94 (372)
T ss_pred HHHHHHhcccceeeecCCcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444433322222233333333444455555555444444443
No 197
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=27.10 E-value=1e+02 Score=33.37 Aligned_cols=36 Identities=19% Similarity=0.144 Sum_probs=24.3
Q ss_pred ceEEEEEecC-CccHHHHHHHHHHHhcCCCeEEEEEEee
Q 003798 633 RHHFVVLFLG-GADAREALAYADRMVGNLDVSLTVIRFL 670 (794)
Q Consensus 633 ~~~I~v~f~G-G~dDreAL~~A~rma~~~~v~ltvl~~~ 670 (794)
.++|+|++.. |+--+.-+..+.+ +.|.+++++....
T Consensus 14 p~~I~vITs~~gAa~~D~~~~~~~--r~~~~~~~~~p~~ 50 (319)
T PF02601_consen 14 PKRIAVITSPTGAAIQDFLRTLKR--RNPIVEIILYPAS 50 (319)
T ss_pred CCEEEEEeCCchHHHHHHHHHHHH--hCCCcEEEEEecc
Confidence 4688888776 5566666666666 6677777766643
No 198
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=26.60 E-value=8.7e+02 Score=26.50 Aligned_cols=71 Identities=10% Similarity=0.017 Sum_probs=36.4
Q ss_pred HHHhc--ccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHh-cCCChHHHHHHHHHH---HhHHHHHHHHHHhh
Q 003798 335 FAVVG--MYTDVYAMFEFGWSGLSPLFGMIVTGYISKLLGTLIPSLL-CQMPFRDSLTLSLMM---SLRGQVELLLYIHW 408 (794)
Q Consensus 335 F~~~G--~~~dl~~l~~~~~~~~~~~~~i~~~~~l~K~~~~~l~~~~-~~~~~~e~~~lgl~m---~~kG~~~l~~~~~~ 408 (794)
|...| +++++.++.+ ....+.......+.-++...+.++..++. ++.+.. +.+|+.+ +|-|..+.+....+
T Consensus 51 ~mmf~mgl~L~~~df~~-~~~~pk~~~~~~~~qfvi~Plla~~l~~l~~~~~p~--l~~GliLv~~~Pgg~~S~v~T~lA 127 (328)
T TIGR00832 51 LMMYPPLAKVDYSALGD-VFKDPKGLILSLFINWIIGPFLMFLLAWLFLRDLFE--YIAGLILLGLARCIAMVFVWNQLA 127 (328)
T ss_pred HHHHHhhhcCCHHHHHH-HHcCchHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH--HHHHHHHHHhcchHHHHHHHHHHc
Confidence 44444 6666666541 11233334455555556667777766765 365543 5556543 44455444444443
No 199
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=26.53 E-value=1.3e+02 Score=28.35 Aligned_cols=57 Identities=16% Similarity=0.171 Sum_probs=42.3
Q ss_pred hhHHHHHHHHhcCCcEEEecCCCCCCCCCCCccccccc-hhHHHHHhhccCCCceEEEecCCC
Q 003798 558 MYQNICELALDNKATLIILPFHKEYPNNLEGTQILRRG-VQSVNIKVLSHAPCSVGVLVDKGN 619 (794)
Q Consensus 558 m~~dI~~~A~~~~a~lIilp~h~~~~~d~~g~~~~~~~-~~~~n~~vl~~ApCsVgIlvdRg~ 619 (794)
..+.+.++.++.+++.||+|...+. | |+...... .+.+.+++-++-+++| +++|..+
T Consensus 42 ~~~~l~~~i~~~~i~~iVvGlP~~~--~--G~~~~~~~~v~~f~~~L~~~~~~~v-~~~DEr~ 99 (138)
T PRK00109 42 DWDRLEKLIKEWQPDGLVVGLPLNM--D--GTEGPRTERARKFANRLEGRFGLPV-VLVDERL 99 (138)
T ss_pred HHHHHHHHHHHhCCCEEEEeccCCC--C--CCcCHHHHHHHHHHHHHHHHhCCCE-EEEcCCc
Confidence 4688999999999999999998763 4 65432222 7788888777668887 6677654
No 200
>PRK10577 iron-hydroxamate transporter permease subunit; Provisional
Probab=26.45 E-value=1.2e+03 Score=28.20 Aligned_cols=24 Identities=25% Similarity=0.596 Sum_probs=20.6
Q ss_pred hhcccCCChhHHHHHHHHhhCccc
Q 003798 62 LLKPLKQPRVISEMIGGIIVGPSI 85 (794)
Q Consensus 62 ll~rl~~P~ii~~IlaGiilGP~~ 85 (794)
++..+|+|+++.-+++|..++-++
T Consensus 392 i~~~~RlPR~l~a~l~G~~La~sG 415 (668)
T PRK10577 392 ALLPLRLPRLLAALLAGAMLAVAG 415 (668)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466789999999999999998654
No 201
>PF01889 DUF63: Membrane protein of unknown function DUF63; InterPro: IPR002749 These proteins of unknown function are found in archaebacteria and are probably transmembrane proteins.
Probab=26.42 E-value=8.1e+02 Score=26.09 Aligned_cols=45 Identities=22% Similarity=0.204 Sum_probs=26.0
Q ss_pred cCCCCCCccHHHHHHHHHHHHHHHHHHHHhhcccCCC-------hhHHHHHHHHhhC
Q 003798 33 FGESPLDSPFLLVLFEIVFIICTTSIIRFLLKPLKQP-------RVISEMIGGIIVG 82 (794)
Q Consensus 33 ~g~~pl~~~l~~~l~~i~lil~~~~l~~~ll~rl~~P-------~ii~~IlaGiilG 82 (794)
+|.||.+. +.-..++.+....+.+++||++++ ..+-+++.|-.+-
T Consensus 18 ~GYn~Vnt-----~~YaiiL~~~v~~v~~ll~~l~i~id~~f~~al~P~m~~G~~lR 69 (273)
T PF01889_consen 18 PGYNPVNT-----LTYAIILGVAVIGVYKLLKRLRIKIDERFVLALIPFMLFGGALR 69 (273)
T ss_pred CCCcHHHH-----HHHHHHHHHHHHHHHHHHHHcCCCCchhhhhhhhhHHHHHHHHH
Confidence 35666652 333344444555667899998876 3445556655443
No 202
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=26.02 E-value=3.6e+02 Score=26.34 Aligned_cols=26 Identities=19% Similarity=0.084 Sum_probs=20.5
Q ss_pred CccHHHHHHHHHHHhcCCCeEEEEEEe
Q 003798 643 GADAREALAYADRMVGNLDVSLTVIRF 669 (794)
Q Consensus 643 G~dDreAL~~A~rma~~~~v~ltvl~~ 669 (794)
.+.|.|+++.|++|++ .+.+++++-+
T Consensus 18 ~~~~~e~l~~A~~l~~-~~~~v~~v~~ 43 (181)
T cd01985 18 NPLDLEAVEAALRLKE-YGGEVTALVI 43 (181)
T ss_pred CHhhHHHHHHHHHHhh-cCCeEEEEEE
Confidence 7889999999999987 4456666654
No 203
>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....
Probab=25.57 E-value=3.9e+02 Score=26.10 Aligned_cols=86 Identities=14% Similarity=0.075 Sum_probs=54.3
Q ss_pred EecCCccHHHHHHHHHHHhcCCCeEEEEEEeeccCCCCCchhhhhhHHHHHHHHHhhcCCCCceEEEEEEecChHHHHHH
Q 003798 639 LFLGGADAREALAYADRMVGNLDVSLTVIRFLSFNHEGDDEMEKKLDDGLVTWFWVKNESNERVRYREVVVRNGAETVAS 718 (794)
Q Consensus 639 ~f~GG~dDreAL~~A~rma~~~~v~ltvl~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~v~y~e~~v~~~~~~~~~ 718 (794)
+..||- ......+|+.|+++...++-++.=.+ ..+...++.+++++.. ..+|.|...-+.|.+++.++
T Consensus 4 litGG~-gglg~~la~~La~~~~~~~il~~r~~--------~~~~~~~~~i~~l~~~---g~~v~~~~~Dv~d~~~v~~~ 71 (181)
T PF08659_consen 4 LITGGL-GGLGQSLARWLAERGARRLILLGRSG--------APSAEAEAAIRELESA---GARVEYVQCDVTDPEAVAAA 71 (181)
T ss_dssp EEETTT-SHHHHHHHHHHHHTT-SEEEEEESSG--------GGSTTHHHHHHHHHHT---T-EEEEEE--TTSHHHHHHH
T ss_pred EEECCc-cHHHHHHHHHHHHcCCCEEEEeccCC--------CccHHHHHHHHHHHhC---CCceeeeccCccCHHHHHHH
Confidence 445554 56889999999999888877666221 1223345678888764 34899988889999999999
Q ss_pred HHhhhccC-cccEEEEecc
Q 003798 719 IQAVNDEA-YCDLWIVGRY 736 (794)
Q Consensus 719 i~~~~~~~-~~DL~iVGr~ 736 (794)
+.+...+. +-|-++-..+
T Consensus 72 ~~~~~~~~~~i~gVih~ag 90 (181)
T PF08659_consen 72 LAQLRQRFGPIDGVIHAAG 90 (181)
T ss_dssp HHTSHTTSS-EEEEEE---
T ss_pred HHHHHhccCCcceeeeeee
Confidence 98887550 1255665554
No 204
>PF06939 DUF1286: Protein of unknown function (DUF1286); InterPro: IPR009705 This entry is represented by Sulfolobus virus STSV1, Orf8. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical archaeal proteins of around 120 residues in length. All members of this family seem to be Sulfolobus species specific. The function of this family is unknown.
Probab=25.51 E-value=1.3e+02 Score=27.16 Aligned_cols=57 Identities=16% Similarity=0.222 Sum_probs=31.0
Q ss_pred CCccccCCCCCCccHHHHHHHHHHHHHHHHHHHHhhcccCCChhHHHHHHHHhhCcc
Q 003798 28 PLGIFFGESPLDSPFLLVLFEIVFIICTTSIIRFLLKPLKQPRVISEMIGGIIVGPS 84 (794)
Q Consensus 28 ~~g~~~g~~pl~~~l~~~l~~i~lil~~~~l~~~ll~rl~~P~ii~~IlaGiilGP~ 84 (794)
..|...-..|+++++|--.+.-.+..+-..++-..+....--.+.-.++.|++.||+
T Consensus 54 ~~g~i~~RTPlTHT~pRSv~WGli~slp~i~~l~~~~~~~~~~il~~Ll~Gvl~GPS 110 (114)
T PF06939_consen 54 RYGYIPVRTPLTHTLPRSVLWGLIPSLPLIILLYYYYGYFNYIILLALLSGVLVGPS 110 (114)
T ss_pred CCCcceecCCCccCcchhhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhhhccchH
Confidence 355566688999988853332222222111112222222333456668899999996
No 205
>PRK05812 secD preprotein translocase subunit SecD; Reviewed
Probab=24.39 E-value=1.2e+03 Score=27.25 Aligned_cols=27 Identities=19% Similarity=0.074 Sum_probs=16.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhccC
Q 003798 136 HVYIAVTGVIIPTATSAAVAFLTRKSM 162 (794)
Q Consensus 136 ~~~ia~~~~~~p~~l~~~~~~~l~~~~ 162 (794)
...++..+..+.+++++++..+++...
T Consensus 357 ~glia~iaL~~~v~~~l~~~~l~g~~l 383 (498)
T PRK05812 357 FGLIANIALVANLVLILAVLSLLGATL 383 (498)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHCCCc
Confidence 344555666666777777777776544
No 206
>PRK04148 hypothetical protein; Provisional
Probab=24.39 E-value=97 Score=29.16 Aligned_cols=33 Identities=33% Similarity=0.420 Sum_probs=29.6
Q ss_pred eEEeccCCChhHHHHHHHHhcCCcEEEecCCCC
Q 003798 549 FTALAPMRSMYQNICELALDNKATLIILPFHKE 581 (794)
Q Consensus 549 ~~~vs~~~~m~~dI~~~A~~~~a~lIilp~h~~ 581 (794)
..++-|..+|+..|.++|++.++|++|-|....
T Consensus 81 iysirpp~el~~~~~~la~~~~~~~~i~~l~~e 113 (134)
T PRK04148 81 IYSIRPPRDLQPFILELAKKINVPLIIKPLSGE 113 (134)
T ss_pred EEEeCCCHHHHHHHHHHHHHcCCCEEEEcCCCC
Confidence 566778899999999999999999999999854
No 207
>COG3371 Predicted membrane protein [Function unknown]
Probab=23.76 E-value=5e+02 Score=25.76 Aligned_cols=63 Identities=17% Similarity=0.224 Sum_probs=41.5
Q ss_pred ccCCChhHHHHHHHHhhCccccCCchhhhhccCCCCcHHHHHHHHHHHHHHHHHHHhhccChhHHHhcCchhhHH
Q 003798 65 PLKQPRVISEMIGGIIVGPSILGRNKKFAEAMLPDNSQLVVRSVGIMAFMYFMFIAGIKMDFTLLKRCGRKHVYI 139 (794)
Q Consensus 65 rl~~P~ii~~IlaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle~d~~~l~~~~~~~~~i 139 (794)
|.+-+.-.-.+++|+.+.- -|. ||++. ....+......+++|.+.+-+..+..+++.+....+
T Consensus 73 k~~~~g~~ll~is~lfLaL--VGV--------FpEgt--~pH~~vs~~ffll~fi~~~i~si~~~~~~~~~~~~~ 135 (181)
T COG3371 73 KIENYGGALLIISGLFLAL--VGV--------FPEGT--PPHVFVSILFFLLSFIAMLIYSIGRLLRNRSGFGLI 135 (181)
T ss_pred HhhhcchHHHHHHHHHHHh--eee--------CCCCC--CchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 5666666667788887753 233 44322 455677788888899999888888877755444433
No 208
>KOG1965 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=23.17 E-value=2.5e+02 Score=32.91 Aligned_cols=74 Identities=19% Similarity=0.323 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHhcccccccccccccccchhh------HHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhHHHH
Q 003798 327 MEIFMPFAFAVVGMYTDVYAMFEFGWSGLSP------LFGMIVTGYISKLLGTLIPSLLCQMPFRDSLTLSLMMSLRGQV 400 (794)
Q Consensus 327 ~~~~~PlfF~~~G~~~dl~~l~~~~~~~~~~------~~~i~~~~~l~K~~~~~l~~~~~~~~~~e~~~lgl~m~~kG~~ 400 (794)
..+++|---.-.|.+++-+.+.+ +...+.. .+..++++...|+.+. .-..++++++|.+.+|.+.+.---+
T Consensus 102 f~vLLPpiif~sgy~l~k~~fF~-n~~si~~fa~~Gt~IS~~~ig~gv~~~~~--~~~~~~~~f~d~L~fGaliSATDPV 178 (575)
T KOG1965|consen 102 FLVLLPPIIFNSGYSLKKKQFFR-NIGSILLFAIFGTFISAVIIGAGVYLLGF--GLLIYDLSFKDCLAFGALISATDPV 178 (575)
T ss_pred HHHhhchhhhcccceechhhhhh-hhHHHHHhhhcceeeehhHHhhHHHHHhc--ccccccccHHHHHHHhhHhcccCch
Confidence 45556655556788888666651 1111110 1111122233333332 3345688999999999988766555
Q ss_pred HHH
Q 003798 401 ELL 403 (794)
Q Consensus 401 ~l~ 403 (794)
...
T Consensus 179 tvL 181 (575)
T KOG1965|consen 179 TVL 181 (575)
T ss_pred HHH
Confidence 443
No 209
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.13 E-value=3.9e+02 Score=22.11 Aligned_cols=37 Identities=19% Similarity=0.249 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcccchHHH
Q 003798 238 WYLISLVILLAFICIAVRRTMLWIVHKTPVGKPVSQGYIV 277 (794)
Q Consensus 238 ~~~~~~~~~~~~~~~v~r~~~~~i~~~~~~~~~~~e~~~~ 277 (794)
+..+++++.++..+|+.|+.+..-++.+| |+.|-.+.
T Consensus 9 ~ivl~ll~G~~~G~fiark~~~k~lk~NP---pine~~iR 45 (71)
T COG3763 9 LIVLALLAGLIGGFFIARKQMKKQLKDNP---PINEEMIR 45 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCC---CCCHHHHH
Confidence 34455555566667888888877777766 34555444
No 210
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=22.73 E-value=6.8e+02 Score=28.61 Aligned_cols=95 Identities=17% Similarity=0.081 Sum_probs=38.9
Q ss_pred ccChhHHHhcCchhhHHHHHHHHHHHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHhhccHHHHHHH-HHhcCccCChh
Q 003798 123 KMDFTLLKRCGRKHVYIAVTGVIIPTATSAAVAFLTRKSMDPELAKVSSIGAITTSLAVTSFPVLNPI-LKDLNLLSSEM 201 (794)
Q Consensus 123 e~d~~~l~~~~~~~~~ia~~~~~~p~~l~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~i-L~el~l~~s~~ 201 (794)
+++.+..++...|-+.+|+..-++..+++++.++++....... .....++++...++.. ++...++ +..+|+-+...
T Consensus 345 ~i~~~~~~~~~~~e~~v~~~~g~~~g~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~-~G~~lp~~~~k~~~DPa~~ 422 (449)
T TIGR00400 345 TVKVKDFFKVILREICVSILVGAILASVNFLRIVFFQGKLLIA-FVVSSSLFVSLTVAKI-LGGLLPIVAKLLKLDPALM 422 (449)
T ss_pred CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHH-HHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCChhhh
Confidence 4466665555555555554333333333344444432221100 0011122222222222 3333333 45556433333
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 003798 202 GRMAIVTAVIGDAIGINIVI 221 (794)
Q Consensus 202 g~l~ls~a~v~D~~~~ill~ 221 (794)
..-. .+.++|+++++++.
T Consensus 423 s~p~--itt~~D~~g~~~~~ 440 (449)
T TIGR00400 423 SGPL--ITTIADALTLIIYF 440 (449)
T ss_pred hhhH--HHHHHHHHHHHHHH
Confidence 3222 34477888766553
No 211
>PRK01658 holin-like protein; Validated
Probab=22.41 E-value=6.2e+02 Score=23.36 Aligned_cols=18 Identities=11% Similarity=0.089 Sum_probs=9.7
Q ss_pred HHHHHHHhcc--cccccccc
Q 003798 331 MPFAFAVVGM--YTDVYAMF 348 (794)
Q Consensus 331 ~PlfF~~~G~--~~dl~~l~ 348 (794)
+|+||+=.|. --..+.+.
T Consensus 66 m~llFVPa~VGi~~~~~ll~ 85 (122)
T PRK01658 66 LPLFFIPSAVGVMNYGDFLS 85 (122)
T ss_pred HHHHHHHhhhHHHHhHHHHH
Confidence 5777764444 33445554
No 212
>PF03600 CitMHS: Citrate transporter; InterPro: IPR004680 Characterised proteins in this entry belong mostly to the divalent anion symporter family, which is found in bacteria, archaea and eukaryotes. Substrates shown to be transported by these proteins include citrate and phosphate []. This entry also contains the melanocyte-specific transporter protein P, mutation of which leads to albinism []. Another protein in this entry, SAC1, has been shown to regulate the sulphur deprivation response in Chlamydomonas by inducing cysteine biosynthesis, though its precise role in this induction is not known [].; GO: 0015137 citrate transmembrane transporter activity, 0015746 citrate transport, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=22.31 E-value=1e+03 Score=25.81 Aligned_cols=18 Identities=17% Similarity=0.473 Sum_probs=12.5
Q ss_pred HHHHHHHHHhcCccCChh
Q 003798 184 FPVLNPILKDLNLLSSEM 201 (794)
Q Consensus 184 ~~vv~~iL~el~l~~s~~ 201 (794)
.|++.++.++.|+.+++.
T Consensus 117 ~Pi~~~~~~~~~i~~~~~ 134 (351)
T PF03600_consen 117 IPIVLSLARKLGIPPSPL 134 (351)
T ss_pred HHHHHHHHHHcCCChHHH
Confidence 378888888888655443
No 213
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=21.53 E-value=3.4e+02 Score=29.08 Aligned_cols=69 Identities=10% Similarity=0.043 Sum_probs=50.9
Q ss_pred CceEEEEeEEeccCCChhHHHHHHHHhcCCcEEEecCCCCCCCCCCCcccccc-c-hhHHHHHhhccCCCceEEEecCCC
Q 003798 542 GELKFNAFTALAPMRSMYQNICELALDNKATLIILPFHKEYPNNLEGTQILRR-G-VQSVNIKVLSHAPCSVGVLVDKGN 619 (794)
Q Consensus 542 ~~v~v~~~~~vs~~~~m~~dI~~~A~~~~a~lIilp~h~~~~~d~~g~~~~~~-~-~~~~n~~vl~~ApCsVgIlvdRg~ 619 (794)
++..|=.+.... ..+.+.|++.|++.++..||--.... ..... . +....+...++++++|++=-|-|.
T Consensus 16 ~~yaV~AfN~~n--~e~~~avi~AAee~~sPvIiq~~~~~--------~~~~g~~~~~~~~~~~a~~~~VPValHLDH~~ 85 (284)
T PRK12737 16 EGYAVPAFNIHN--LETLQVVVETAAELRSPVILAGTPGT--------FSYAGTDYIVAIAEVAARKYNIPLALHLDHHE 85 (284)
T ss_pred cCceEEEEEeCC--HHHHHHHHHHHHHhCCCEEEEcCccH--------HhhCCHHHHHHHHHHHHHHCCCCEEEECCCCC
Confidence 345555566665 38899999999999999999765422 21111 2 778888999999999999888876
Q ss_pred C
Q 003798 620 F 620 (794)
Q Consensus 620 ~ 620 (794)
.
T Consensus 86 ~ 86 (284)
T PRK12737 86 D 86 (284)
T ss_pred C
Confidence 4
No 214
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=21.51 E-value=1.2e+03 Score=26.38 Aligned_cols=97 Identities=13% Similarity=0.029 Sum_probs=61.5
Q ss_pred HHHhhcc-cCCChhHHHHHHHHhhCccccCCchhhhhccCCCCcHHHHHHHHHHHHHHHHHHHhhc-cChhHHHhcCchh
Q 003798 59 IRFLLKP-LKQPRVISEMIGGIIVGPSILGRNKKFAEAMLPDNSQLVVRSVGIMAFMYFMFIAGIK-MDFTLLKRCGRKH 136 (794)
Q Consensus 59 ~~~ll~r-l~~P~ii~~IlaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~~Gle-~d~~~l~~~~~~~ 136 (794)
++.++++ +++|..+..|+.=+++-- +|.+|+-.+ ....++.+++..--.--+|+-+|+. +|++++.+.....
T Consensus 261 ~G~ll~~~i~ih~~a~mIi~~~i~K~--~~lvP~~~e----~~a~~~~~f~~~~lt~~lLvgiGv~~~~l~~l~~a~t~~ 334 (414)
T PF03390_consen 261 LGVLLSKLIGIHAYAWMIILVAIVKA--FGLVPESLE----EGAKQWYKFFSKNLTWPLLVGIGVAYTDLNDLIAAFTPQ 334 (414)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHH--hCcCCHHHH----HHHHHHHHHHHHHHHHHHHHHHHhhhCcHHHHHHHhCHH
Confidence 3444333 599999999888777753 566643221 1224566666666677789999998 9999998877655
Q ss_pred hHHHHHHHHHH-HHHHHHHHHHhhcc
Q 003798 137 VYIAVTGVIIP-TATSAAVAFLTRKS 161 (794)
Q Consensus 137 ~~ia~~~~~~p-~~l~~~~~~~l~~~ 161 (794)
..+-+....+. .+.++.++++++.+
T Consensus 335 ~vv~~~~~Vl~~~~~a~~vG~l~g~Y 360 (414)
T PF03390_consen 335 YVVIVLATVLGAVIGAFLVGKLVGFY 360 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 54444433333 34445566666554
No 215
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=21.50 E-value=1e+03 Score=26.12 Aligned_cols=128 Identities=17% Similarity=0.038 Sum_probs=64.2
Q ss_pred Cccccccc-hhHHHHHhhccCCCceEEEecCCCCCCCCcccCCCccceEEEEEecCCccHHHHHHHHHHHhcCCCeE-EE
Q 003798 588 GTQILRRG-VQSVNIKVLSHAPCSVGVLVDKGNFRNPMHAAGGSMRRHHFVVLFLGGADAREALAYADRMVGNLDVS-LT 665 (794)
Q Consensus 588 g~~~~~~~-~~~~n~~vl~~ApCsVgIlvdRg~~~~~~~~~~~~~~~~~I~v~f~GG~dDreAL~~A~rma~~~~v~-lt 665 (794)
|.++.+-. ..++.+.|-+..+.++-|-+-=+.. . ..-||.+-.|++++|+++.+...+. ++
T Consensus 185 GslenR~r~~~eiv~~ir~~vg~~~~v~iRl~~~--------------~---~~~~G~~~~e~~~~~~~l~~~G~vd~i~ 247 (343)
T cd04734 185 GSLENRMRFLLEVLAAVRAAVGPDFIVGIRISGD--------------E---DTEGGLSPDEALEIAARLAAEGLIDYVN 247 (343)
T ss_pred CCHHHHhHHHHHHHHHHHHHcCCCCeEEEEeehh--------------h---ccCCCCCHHHHHHHHHHHHhcCCCCEEE
Confidence 55553323 7788888888776664433211111 0 1347888899999999999865322 22
Q ss_pred EE--EeeccC--CC--CCchhhhhhHHHHHHHHHhhcCCCCceEEEEEEecChHHHHHHHHhhhccCcccEEEEecccCC
Q 003798 666 VI--RFLSFN--HE--GDDEMEKKLDDGLVTWFWVKNESNERVRYREVVVRNGAETVASIQAVNDEAYCDLWIVGRYQGI 739 (794)
Q Consensus 666 vl--~~~~~~--~~--~~~~~~~~~d~~~l~~~~~~~~~~~~v~y~e~~v~~~~~~~~~i~~~~~~~~~DL~iVGr~~~~ 739 (794)
|- +.-... .. .....+.....++.+.+++.. +..|...=. +.+.++..+++++ .. .|++.+||.--.
T Consensus 248 vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~--~ipvi~~G~-i~~~~~~~~~l~~--~~--~D~V~~gR~~la 320 (343)
T cd04734 248 VSAGSYYTLLGLAHVVPSMGMPPGPFLPLAARIKQAV--DLPVFHAGR-IRDPAEAEQALAA--GH--ADMVGMTRAHIA 320 (343)
T ss_pred eCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHc--CCCEEeeCC-CCCHHHHHHHHHc--CC--CCeeeecHHhHh
Confidence 21 110000 00 000011112234556666542 222333211 2234555556543 23 799999997433
No 216
>TIGR00659 conserved hypothetical protein TIGR00659. Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.
Probab=21.14 E-value=9.2e+02 Score=24.88 Aligned_cols=42 Identities=12% Similarity=0.181 Sum_probs=28.5
Q ss_pred HHhhccChhHHHhcCchhhHHHHHHHHHHHHHHHHHHHHhhc
Q 003798 119 IAGIKMDFTLLKRCGRKHVYIAVTGVIIPTATSAAVAFLTRK 160 (794)
Q Consensus 119 ~~Gle~d~~~l~~~~~~~~~ia~~~~~~p~~l~~~~~~~l~~ 160 (794)
..-+=-+.+.+||+++....-...+.++.+..+..++.+++.
T Consensus 73 AvPLY~~~~~lk~~~~~Il~~~~~G~~~~~~s~~~la~~lg~ 114 (226)
T TIGR00659 73 AIPLYKQLPQIKKYWKEIILNVAVGSVIAIISGTLLALLLGL 114 (226)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCc
Confidence 344445677888888777776666777777667777766654
No 217
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=21.01 E-value=1.6e+02 Score=31.53 Aligned_cols=70 Identities=16% Similarity=0.213 Sum_probs=37.7
Q ss_pred HHHHHhcCCC-eEEEEEEeeccCCCCCchhhhhhHHHHHHHHHhhcCCCCceEEEEEEecChHHHHHHHHhhhccCcccE
Q 003798 652 YADRMVGNLD-VSLTVIRFLSFNHEGDDEMEKKLDDGLVTWFWVKNESNERVRYREVVVRNGAETVASIQAVNDEAYCDL 730 (794)
Q Consensus 652 ~A~rma~~~~-v~ltvl~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~v~y~e~~v~~~~~~~~~i~~~~~~~~~DL 730 (794)
.++...+|+. .++|++.+.+. --++-.+++.++..... ++|+ |.++.|| .+.+++..+. ||+
T Consensus 90 tlRevlkh~~ve~i~~VEID~~--------Vi~~ar~~l~~~~~~~~-dpRv---~i~i~Dg---~~~v~~~~~~--fDv 152 (282)
T COG0421 90 TLREVLKHLPVERITMVEIDPA--------VIELARKYLPEPSGGAD-DPRV---EIIIDDG---VEFLRDCEEK--FDV 152 (282)
T ss_pred HHHHHHhcCCcceEEEEEcCHH--------HHHHHHHhccCcccccC-CCce---EEEeccH---HHHHHhCCCc--CCE
Confidence 4444556664 56666654211 11233333333322211 4665 6667666 4567777666 999
Q ss_pred EEEecccC
Q 003798 731 WIVGRYQG 738 (794)
Q Consensus 731 ~iVGr~~~ 738 (794)
+|+=-+..
T Consensus 153 Ii~D~tdp 160 (282)
T COG0421 153 IIVDSTDP 160 (282)
T ss_pred EEEcCCCC
Confidence 99977644
No 218
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=20.97 E-value=1.3e+02 Score=34.46 Aligned_cols=26 Identities=38% Similarity=0.433 Sum_probs=19.6
Q ss_pred HHHHHHHHhhhccCcccEEEEecccCC
Q 003798 713 AETVASIQAVNDEAYCDLWIVGRYQGI 739 (794)
Q Consensus 713 ~~~~~~i~~~~~~~~~DL~iVGr~~~~ 739 (794)
.+++++|+.....+ ||.+|+||++|.
T Consensus 179 ~~i~~al~~~~~~~-~Dviii~RGGGS 204 (438)
T PRK00286 179 ASIVAAIERANARG-EDVLIVARGGGS 204 (438)
T ss_pred HHHHHHHHHhcCCC-CCEEEEecCCCC
Confidence 56677777776544 799999999875
No 219
>COG0175 CysH 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=20.90 E-value=3.1e+02 Score=28.86 Aligned_cols=33 Identities=30% Similarity=0.382 Sum_probs=24.3
Q ss_pred EEEEEecCCccHHHHHHHHHHHhcCCCeEEEEEEeec
Q 003798 635 HFVVLFLGGADAREALAYADRMVGNLDVSLTVIRFLS 671 (794)
Q Consensus 635 ~I~v~f~GG~dDreAL~~A~rma~~~~v~ltvl~~~~ 671 (794)
.+++.|.||+|+-..|.+|.+.... +.|+++-+
T Consensus 41 ~~~~~~S~Gkds~V~l~L~~k~~~~----~~vif~DT 73 (261)
T COG0175 41 PVVVSFSGGKDSTVLLHLAAKAFPD----FPVIFLDT 73 (261)
T ss_pred CeEEEecCchhHHHHHHHHHHhcCC----CcEEEEeC
Confidence 3678888888888888888877765 56666543
No 220
>COG3748 Predicted membrane protein [Function unknown]
Probab=20.89 E-value=6.9e+02 Score=27.14 Aligned_cols=55 Identities=15% Similarity=0.099 Sum_probs=32.2
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccchhhHHHHHHHHHHHHH
Q 003798 312 PPLGATLVERTETLIMEIFMPFAFAVVGMYTDVYAMFEFGWSGLSPLFGMIVTGYISKL 370 (794)
Q Consensus 312 ~~~~~~l~~kl~~~~~~~~~PlfF~~~G~~~dl~~l~~~~~~~~~~~~~i~~~~~l~K~ 370 (794)
|.+++.-.+|-.. .+-+-+|+.|+++-=+..+..=. ...|.++.++.+.++..|-
T Consensus 212 P~~gk~akqRS~H-NnylTLPVlF~MlSNHyp~~~gt---~fnWii~alv~l~gV~IRh 266 (407)
T COG3748 212 PKLGKTAKQRSRH-NNYLTLPVLFTMLSNHYPLAFGT---QFNWIIAALVFLMGVLIRH 266 (407)
T ss_pred cchhhhhhhhhhh-cceehHHHHHHHHhccCcccccC---chhHHHHHHHHHHHHHHHH
Confidence 4444444444333 35677899998876665544322 4578766666666665553
No 221
>PF13194 DUF4010: Domain of unknown function (DUF4010)
Probab=20.59 E-value=9.1e+02 Score=24.56 Aligned_cols=26 Identities=19% Similarity=0.028 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHhchhhhH-HHHHHHhh
Q 003798 282 GVLVMGFLTDMFGMAIAN-GPLWLGLV 307 (794)
Q Consensus 282 ~~l~~~~~ae~~G~~~~l-gaflaGl~ 307 (794)
+.++..+..+++|-.++. .+++.|++
T Consensus 138 i~~~~~~~~~~~G~~Gl~~~a~isGl~ 164 (211)
T PF13194_consen 138 ILLLSRAAQRWFGDSGLYALAAISGLA 164 (211)
T ss_pred HHHHHHHHHHHHChhhHHHHHHHHHhh
Confidence 444556677788887754 67888864
No 222
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional
Probab=20.49 E-value=2.9e+02 Score=28.94 Aligned_cols=38 Identities=16% Similarity=0.226 Sum_probs=30.4
Q ss_pred eEEEEEecCCccHHHHHHHHHHHhcCC--CeEEEEEEeec
Q 003798 634 HHFVVLFLGGADAREALAYADRMVGNL--DVSLTVIRFLS 671 (794)
Q Consensus 634 ~~I~v~f~GG~dDreAL~~A~rma~~~--~v~ltvl~~~~ 671 (794)
.+|+|.+.||+|.--.|.++.++.+.. +.++..+++..
T Consensus 30 ~kilVa~SGG~DS~~LL~ll~~l~~~~~~~~~l~av~vd~ 69 (258)
T PRK10696 30 DRVMVCLSGGKDSYTLLDILLNLQKRAPINFELVAVNLDQ 69 (258)
T ss_pred CEEEEEecCCHHHHHHHHHHHHHHHhCCCCeEEEEEEecC
Confidence 499999999999999888888887543 46777777653
No 223
>COG2431 Predicted membrane protein [Function unknown]
Probab=20.33 E-value=1.1e+03 Score=25.26 Aligned_cols=47 Identities=21% Similarity=0.363 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHhHHHHHHHHH
Q 003798 359 FGMIVTGYISKLLGTLIPSLLCQMPFRDSLTLSLMMSLRGQVELLLY 405 (794)
Q Consensus 359 ~~i~~~~~l~K~~~~~l~~~~~~~~~~e~~~lgl~m~~kG~~~l~~~ 405 (794)
...-+..+++-.++..+++...++|++++++++..++=-......++
T Consensus 166 l~l~~i~ilssliGG~iaa~~l~lpl~~~lAmasG~GWYSlsG~ll~ 212 (297)
T COG2431 166 LILAFITLLSSLIGGLIAAFLLDLPLTTGLAMASGFGWYSLSGILLT 212 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhccchhhhhhHHHh
Confidence 44455566778888889999999999999888776555444444443
No 224
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=20.33 E-value=9.3e+02 Score=29.20 Aligned_cols=97 Identities=18% Similarity=0.105 Sum_probs=56.7
Q ss_pred eeEEEeccCCchHHHHHHHHhhCCCCCCCceEEEEEEeeecCCCccccccccccCCCCCCCcchHHHHHHHHhhhhcCce
Q 003798 465 RLVVCVHEEESVAGLINLLEVSCPTVDSPFSIYSLHLIELIGRGIPLLVDYENEEHSPEYTNDDAIHNALKLYSETRGEL 544 (794)
Q Consensus 465 riLv~v~~~~~~~~li~l~~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~~v 544 (794)
+||.-+.||+..-+++++...+.+ ...|.+--|.+.|..+..+ + + .++-..+--.+.. ..
T Consensus 562 QILLlV~nPrss~~Lirf~N~LKK-----ggLYilGHV~~gd~~~~~~--d-------~---l~~q~~~W~s~vd---~~ 621 (945)
T KOG1288|consen 562 QILLLVSNPRSSCNLIRFCNDLKK-----GGLYILGHVIVGDDFSASM--D-------E---LQQQQRAWLSFVD---DA 621 (945)
T ss_pred eEEEEecCCcccchHHHHHHhhcc-----cceEEEEEEEecccccccc--c-------h---hhHHHHHHHHHHH---Hh
Confidence 699999999999999999988843 4568887777665333111 0 0 0111111111111 22
Q ss_pred EEEEeEEeccCCChhHHHHHHHHh-----cCCcEEEecCCCC
Q 003798 545 KFNAFTALAPMRSMYQNICELALD-----NKATLIILPFHKE 581 (794)
Q Consensus 545 ~v~~~~~vs~~~~m~~dI~~~A~~-----~~a~lIilp~h~~ 581 (794)
.+..|+.+.--.++-.+|-++-+- .+.+.+++||+..
T Consensus 622 ~iKAFvelt~spsir~Giq~Lir~SGLGgMKPNt~VlgF~d~ 663 (945)
T KOG1288|consen 622 GIKAFVELTISPSIRWGIQHLIRLSGLGGMKPNTAVLGFYDL 663 (945)
T ss_pred hhhhheeeccChhHHHHHHHHhhhcccCCcCCceEEEEeecC
Confidence 233344443223777777776653 4579999999843
No 225
>TIGR03869 F420-0_ABCperm proposed F420-0 ABC transporter, permease protein. his small clade of ABC-type transporter permease protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and an ATPase (TIGR03873). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with an F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this permease protein is a component of a F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=20.28 E-value=1.1e+03 Score=25.61 Aligned_cols=57 Identities=14% Similarity=0.103 Sum_probs=33.3
Q ss_pred hhcccCCChhHHHHHHHHhhCccccCCchhhhhccCCCCcHHHHHHHHHHHHHHHHHH
Q 003798 62 LLKPLKQPRVISEMIGGIIVGPSILGRNKKFAEAMLPDNSQLVVRSVGIMAFMYFMFI 119 (794)
Q Consensus 62 ll~rl~~P~ii~~IlaGiilGP~~lg~~~~~~~~lfp~~~~~~l~~l~~lgl~~llF~ 119 (794)
+...+|+|+++.-+++|..+|=++.=.-.-+.+.+- +.+.--++.-+.+|.++.+|.
T Consensus 48 ii~~~RlPRil~a~lvG~~La~sG~i~Q~l~rNpLa-~P~iLGissGA~l~~~l~~~~ 104 (325)
T TIGR03869 48 IVWDLRLPRVLTAAAVGAGLAIAGAVMQSLTRNPLA-DPYLLGLSSGASLGAVAVLVL 104 (325)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC-CCcHHHHHHHHHHHHHHHHHH
Confidence 445779999999999999998654211000111111 112334455667777777665
No 226
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=20.04 E-value=3.7e+02 Score=28.79 Aligned_cols=71 Identities=20% Similarity=0.208 Sum_probs=50.6
Q ss_pred CceEEEEeEEeccCCChhHHHHHHHHhcCCcEEEecCCCCCCCCCCCccccccchhHHHHHhhccCCCceEEEecCCCC
Q 003798 542 GELKFNAFTALAPMRSMYQNICELALDNKATLIILPFHKEYPNNLEGTQILRRGVQSVNIKVLSHAPCSVGVLVDKGNF 620 (794)
Q Consensus 542 ~~v~v~~~~~vs~~~~m~~dI~~~A~~~~a~lIilp~h~~~~~d~~g~~~~~~~~~~~n~~vl~~ApCsVgIlvdRg~~ 620 (794)
++..|=.+...+ ..+.+.+++.|++.++..||--....-... | .+.+........++++++|++=-|-|..
T Consensus 16 ~~yaV~AfNv~n--~e~~~avi~AAee~~sPvIlq~~~~~~~~~--g----~~~~~~~~~~~A~~~~VPValHLDH~~~ 86 (284)
T PRK12857 16 GGYAVGAFNCNN--MEIVQAIVAAAEAEKSPVIIQASQGAIKYA--G----IEYISAMVRTAAEKASVPVALHLDHGTD 86 (284)
T ss_pred cCCeEEEEEeCC--HHHHHHHHHHHHHhCCCEEEEechhHhhhC--C----HHHHHHHHHHHHHHCCCCEEEECCCCCC
Confidence 344455566555 388999999999999999997765321111 1 1127778888999999999998888853
Done!