Query 003798
Match_columns 794
No_of_seqs 338 out of 2032
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 04:23:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003798.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003798hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zcd_A Na(+)/H(+) antiporter 1 99.9 7.5E-24 2.6E-28 229.7 12.0 301 104-441 59-384 (388)
2 3mt0_A Uncharacterized protein 99.6 3.3E-14 1.1E-18 151.2 20.7 254 464-781 8-278 (290)
3 3loq_A Universal stress protei 99.5 8E-14 2.7E-18 148.5 13.8 267 464-781 23-292 (294)
4 3cis_A Uncharacterized protein 99.5 2.6E-13 9E-18 145.6 15.9 276 463-780 19-307 (309)
5 3olq_A Universal stress protei 99.5 1.4E-13 4.9E-18 148.1 13.8 276 464-781 8-307 (319)
6 3ab8_A Putative uncharacterize 99.4 1.1E-12 3.8E-17 137.5 16.7 254 465-777 2-267 (268)
7 3fdx_A Putative filament prote 98.5 2.7E-07 9.3E-12 86.2 8.6 136 464-614 2-142 (143)
8 3s3t_A Nucleotide-binding prot 98.5 1.4E-07 4.8E-12 88.6 6.0 137 464-614 6-145 (146)
9 3dlo_A Universal stress protei 98.5 6.5E-07 2.2E-11 85.4 10.6 129 463-614 24-154 (155)
10 3hgm_A Universal stress protei 98.4 2.9E-07 1E-11 86.4 7.7 136 464-613 3-146 (147)
11 1mjh_A Protein (ATP-binding do 98.4 1.2E-06 4.2E-11 83.7 11.7 137 464-614 6-157 (162)
12 1tq8_A Hypothetical protein RV 98.4 1.2E-06 4.1E-11 84.3 11.4 136 463-614 17-156 (163)
13 3tnj_A Universal stress protei 98.4 4.6E-07 1.6E-11 85.4 7.0 138 464-615 7-146 (150)
14 2dum_A Hypothetical protein PH 98.4 1.1E-06 3.7E-11 84.9 9.4 138 464-615 6-155 (170)
15 2z08_A Universal stress protei 98.3 7E-07 2.4E-11 82.9 7.5 132 464-614 3-136 (137)
16 3s3t_A Nucleotide-binding prot 98.3 7.6E-06 2.6E-10 76.5 13.5 128 633-778 5-146 (146)
17 1jmv_A USPA, universal stress 98.3 2.4E-06 8.1E-11 79.6 9.5 133 464-615 3-137 (141)
18 2gm3_A Unknown protein; AT3G01 98.3 3E-06 1E-10 82.3 10.4 142 464-617 6-164 (175)
19 3fg9_A Protein of universal st 98.3 6.9E-07 2.4E-11 84.9 5.5 137 463-614 15-155 (156)
20 3idf_A USP-like protein; unive 98.2 8.2E-06 2.8E-10 75.6 12.5 125 634-777 2-137 (138)
21 3dlo_A Universal stress protei 98.2 3.1E-06 1.1E-10 80.6 9.9 128 633-778 24-155 (155)
22 3tnj_A Universal stress protei 98.2 3.5E-06 1.2E-10 79.3 9.4 127 633-780 6-148 (150)
23 3idf_A USP-like protein; unive 98.2 9.2E-07 3.2E-11 82.1 5.2 132 465-614 3-137 (138)
24 3fg9_A Protein of universal st 98.2 4.2E-06 1.4E-10 79.5 9.5 128 633-778 15-156 (156)
25 2dum_A Hypothetical protein PH 98.1 1.4E-05 4.9E-10 76.9 11.2 132 633-781 5-158 (170)
26 3hgm_A Universal stress protei 98.1 9.8E-06 3.3E-10 75.8 9.7 128 634-777 3-147 (147)
27 3fdx_A Putative filament prote 98.1 2.2E-05 7.5E-10 73.0 11.8 127 634-778 2-143 (143)
28 2z08_A Universal stress protei 98.1 1.8E-05 6.1E-10 73.2 10.4 125 634-778 3-137 (137)
29 1mjh_A Protein (ATP-binding do 98.0 4.8E-05 1.6E-09 72.4 13.4 130 633-780 5-160 (162)
30 1jmv_A USPA, universal stress 98.0 1E-05 3.6E-10 75.1 7.3 126 634-780 3-139 (141)
31 1tq8_A Hypothetical protein RV 97.9 4E-05 1.4E-09 73.5 10.4 129 633-780 17-159 (163)
32 1q77_A Hypothetical protein AQ 97.8 4.9E-05 1.7E-09 70.3 8.7 101 633-738 4-120 (138)
33 1q77_A Hypothetical protein AQ 97.8 8.7E-05 3E-09 68.6 9.8 129 464-614 5-137 (138)
34 3olq_A Universal stress protei 97.7 4.3E-05 1.5E-09 81.5 6.6 146 463-620 156-309 (319)
35 3cis_A Uncharacterized protein 97.7 0.00015 5.3E-09 76.9 10.7 134 631-781 17-163 (309)
36 3zux_A Transporter, ASBTNM; tr 97.6 0.015 5.2E-07 62.2 26.3 110 108-228 44-156 (332)
37 2gm3_A Unknown protein; AT3G01 97.6 0.00048 1.6E-08 66.4 13.0 131 633-781 5-165 (175)
38 3loq_A Universal stress protei 97.6 0.00016 5.5E-09 76.1 10.3 119 462-614 169-288 (294)
39 3mt0_A Uncharacterized protein 97.6 0.00014 4.7E-09 76.5 8.6 121 633-780 7-129 (290)
40 3ab8_A Putative uncharacterize 97.5 0.00012 4.1E-09 75.9 6.6 129 635-781 2-151 (268)
41 3g40_A Na-K-CL cotransporter; 96.2 0.1 3.5E-06 53.6 15.4 219 464-738 21-255 (294)
42 1efv_B Electron transfer flavo 70.3 6.9 0.00024 39.7 6.6 92 643-750 39-144 (255)
43 1efp_B ETF, protein (electron 68.9 7.2 0.00025 39.5 6.4 92 643-750 36-141 (252)
44 1o97_C Electron transferring f 65.1 5.5 0.00019 40.7 4.7 93 643-750 36-140 (264)
45 3zux_A Transporter, ASBTNM; tr 59.3 38 0.0013 35.6 10.1 126 302-441 28-155 (332)
46 1zun_A Sulfate adenylyltransfe 56.6 10 0.00035 39.9 5.0 56 635-697 48-103 (325)
47 1iv0_A Hypothetical protein; r 54.5 21 0.00071 30.4 5.7 57 557-619 38-95 (98)
48 1ni5_A Putative cell cycle pro 47.8 29 0.00098 38.0 7.1 58 634-696 14-72 (433)
49 1wy5_A TILS, hypothetical UPF0 45.8 29 0.00098 36.2 6.4 58 634-696 25-83 (317)
50 2k3c_A TMIX peptide; membrane 38.5 0.79 2.7E-05 30.9 -4.5 27 285-311 5-31 (33)
51 2wsi_A FAD synthetase; transfe 37.7 44 0.0015 34.6 6.3 55 635-696 55-127 (306)
52 3a2k_A TRNA(Ile)-lysidine synt 34.5 50 0.0017 36.4 6.4 59 634-696 19-77 (464)
53 1nu0_A Hypothetical protein YQ 33.7 47 0.0016 30.1 4.9 59 556-619 39-98 (138)
54 2l0e_A Sodium/hydrogen exchang 32.4 14 0.00048 24.7 0.8 26 171-196 5-30 (33)
55 3fwk_A FMN adenylyltransferase 30.1 1.6E+02 0.0054 30.4 8.8 91 635-738 60-171 (308)
56 2oq2_A Phosphoadenosine phosph 28.3 50 0.0017 33.3 4.6 55 635-697 43-97 (261)
57 1sur_A PAPS reductase; assimil 24.1 76 0.0026 30.6 5.0 51 635-696 46-96 (215)
58 2k4m_A TR8_protein, UPF0146 pr 23.6 1.2E+02 0.004 28.0 5.6 36 547-582 91-126 (153)
59 2zy9_A Mg2+ transporter MGTE; 22.9 3.1E+02 0.011 29.9 10.3 94 123-221 369-463 (473)
60 3o4f_A Spermidine synthase; am 22.4 47 0.0016 34.2 3.1 70 652-737 97-167 (294)
No 1
>1zcd_A Na(+)/H(+) antiporter 1; membrane protein; 3.45A {Escherichia coli} PDB: 3fi1_A
Probab=99.90 E-value=7.5e-24 Score=229.71 Aligned_cols=301 Identities=13% Similarity=0.124 Sum_probs=213.6
Q ss_pred HHHHHHHHHHHHHHHHHhhccChhHH----HhcCc--hhhHHHHHHHHHHHHHHHHHHHHhhccCCcchhhHHHHHHHHH
Q 003798 104 VVRSVGIMAFMYFMFIAGIKMDFTLL----KRCGR--KHVYIAVTGVIIPTATSAAVAFLTRKSMDPELAKVSSIGAITT 177 (794)
Q Consensus 104 ~l~~l~~lgl~~llF~~Gle~d~~~l----~~~~~--~~~~ia~~~~~~p~~l~~~~~~~l~~~~~~~~~~~~~~l~lg~ 177 (794)
....+.+-.+.+|||.+|+|+|.+.+ ++.+| .....++.|+++|+++. ..+.... ..+.....
T Consensus 59 l~~windglm~lFff~vGLEik~e~l~G~L~~~~~a~~p~~aAlgGmivP~~iy----~~~~~~~-------~~~~~gw~ 127 (388)
T 1zcd_A 59 MLLWINDALMAVFFLLVGLEVKRELMQGSLASLRQAAFPVIAAIGGMIVPALLY----LAFNYAD-------PITREGWA 127 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSSTTTSHHHHHHHHHHTTTTHHHH----GGGCCSS-------TTHHHHTS
T ss_pred HHHHHhhHhHHHHHHHHHHHhhHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHH----HHHhcCC-------hhhhhhhH
Confidence 45667888999999999999999877 55444 37888999999999873 2232211 23445566
Q ss_pred HHhhccHHHHHHHHHhcCc-cCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 003798 178 SLAVTSFPVLNPILKDLNL-LSSEMGRMAIVTAVIGDAIGINIVIAFEAAKQGEGDSVDAVWYLISLVILLAFICIAVRR 256 (794)
Q Consensus 178 ~ls~Ts~~vv~~iL~el~l-~~s~~g~l~ls~a~v~D~~~~ill~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~r~ 256 (794)
+.+.|+.+....++..++. .++..++.+++.|++||+.+|++++++++ ++ . ...+... .++++++.
T Consensus 128 ip~ATdIAfal~vL~~lg~~~p~~l~~flLalAvvDDl~aiivIAvfyt---~~-~--~~~~l~~-~~~~~~~~------ 194 (388)
T 1zcd_A 128 IPAATDIAFALGVLALLGSRVPLALKIFLMALAIIDDLGAIIIIALFYT---ND-L--SMASLGV-AAVAIAVL------ 194 (388)
T ss_dssp SSSCCCHHHHHHHHHSSCSSSCSSSHHHHHHHHHHHHHHHHHHHHHHSC---CC-C--CHHHHHH-HHHHHHHH------
T ss_pred HHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHc---CC-c--cHHHHHH-HHHHHHHH------
Confidence 6777888888899998754 45666799999999999999999988853 22 2 1111111 11111111
Q ss_pred HHHHHHHhCCCCCcccchHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhcCCCC----CchhHHHHHHHHHHHHHHHH
Q 003798 257 TMLWIVHKTPVGKPVSQGYIVGILLGVLVMGFLTDMFGMAIANGPLWLGLVIPDGP----PLGATLVERTETLIMEIFMP 332 (794)
Q Consensus 257 ~~~~i~~~~~~~~~~~e~~~~~il~~~l~~~~~ae~~G~~~~lgaflaGl~i~~~~----~~~~~l~~kl~~~~~~~~~P 332 (794)
++.+|.. +++...+..+ .+ .+.+.++..|+|+.+|+|++|+++|..+ +..+++++++++++..+++|
T Consensus 195 ---~~l~r~~----v~~~~~y~~l-gl-~~w~~~~~sGvHatigg~l~Gl~ip~~~~~~~~~~~~le~~l~p~v~~~ilP 265 (388)
T 1zcd_A 195 ---AVLNLCG----ARRTGVYILV-GV-VLWTAVLKSGVHATLAGVIVGFFIPLKEKHGRSPAKRLEHVLHPWVAYLILP 265 (388)
T ss_dssp ---HHHHHTT----CCCTHHHHHH-HH-HHHHHTTTSHHHHHHHHHHHHHHSCCCGGGSSCHHHHHHHHHHHHHHHTHHH
T ss_pred ---HHHHHhc----chhHHHHHHH-HH-HHHHHHHHhCccHHHHHHHHHHhccCCCccCCCHHHHHHHHHHHHHHHHHHH
Confidence 2223321 1223344433 22 4456779999999999999999999853 45789999999999999999
Q ss_pred HH-HHHhccccccccccc-ccccchhhHHHHHHHHHHHHHHHHHHHHHhc----------CCChHHHHHHHHHHHhHHHH
Q 003798 333 FA-FAVVGMYTDVYAMFE-FGWSGLSPLFGMIVTGYISKLLGTLIPSLLC----------QMPFRDSLTLSLMMSLRGQV 400 (794)
Q Consensus 333 lf-F~~~G~~~dl~~l~~-~~~~~~~~~~~i~~~~~l~K~~~~~l~~~~~----------~~~~~e~~~lgl~m~~kG~~ 400 (794)
+| |+..|+++|...+.. .++..| .+++..+++|++|++..++.. |++|+|...+|++++.++++
T Consensus 266 lFaFanaGv~l~~~~~~~l~~~~~l----gi~~glvvGK~~Gi~~~~~l~~rl~~~~lp~g~~~~~~~~vg~L~gigftm 341 (388)
T 1zcd_A 266 LFAFANAGVSLQGVTLDGLTSILPL----GIIAGLLIGKPLGISLFCWLALRLKLAHLPEGTTYQQIMVVGILCGIGFTM 341 (388)
T ss_dssp HHHHHHCCCCCSSSCCCTHHHHSST----TTTHHHHHTTGGGSTTHHHHTSSCTTTCCCCSCCGGGGTTHHHHTTCCHHH
T ss_pred HHHHHhcCeeecccchhhccChHHH----HHHHHHHHHHHHHHHHHHHHHHHhccCcCCCCCCHHHHHHHHHHhccchHH
Confidence 99 999999999743220 001222 344455889998855544444 99999999999999999999
Q ss_pred HHHHHHhhhhccc--cCCchhHHHHHHHHHHHHhHHHHHHhhc
Q 003798 401 ELLLYIHWIDKLI--IGVPPFTLLVLSTVVITGIAGPLISFLY 441 (794)
Q Consensus 401 ~l~~~~~~~~~~i--i~~~~~~~lv~~~ll~t~i~~plv~~l~ 441 (794)
++++++.+++.+. +.++.+..+++++++++.+.+.++++.+
T Consensus 342 sL~Ia~laf~~~~~~~~~~ak~~il~~s~~s~i~g~~~L~~~~ 384 (388)
T 1zcd_A 342 SIFIASLAFGSVDPELINWAKLGILVGSISSAVIGYSWLRVRL 384 (388)
T ss_dssp HHHHHHHHSTTSSCSSHHHHHHHHHHHHHTTTSTTTGGGTTTC
T ss_pred HHHHHHHhccCCchhhHhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999998875 3456688888888886655555555443
No 2
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=99.60 E-value=3.3e-14 Score=151.19 Aligned_cols=254 Identities=14% Similarity=0.097 Sum_probs=167.8
Q ss_pred ceeEEEeccCCchHHHHHHHHhhCCCCCCCceEEEEEEeeecCCCccccccccccCCCCCCCcchHHHH-HHHHhhhhcC
Q 003798 464 LRLVVCVHEEESVAGLINLLEVSCPTVDSPFSIYSLHLIELIGRGIPLLVDYENEEHSPEYTNDDAIHN-ALKLYSETRG 542 (794)
Q Consensus 464 lriLv~v~~~~~~~~li~l~~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~~i~~-af~~~~~~~~ 542 (794)
.+||+|++..++....++.+..++...+ ..++++|+++ + .+ .+..++ ..+.+.. .
T Consensus 8 ~~ILv~~D~s~~s~~al~~A~~la~~~~--a~l~ll~v~~-~---------~~----------~~~~l~~~~~~~~~--~ 63 (290)
T 3mt0_A 8 RSILVVIEPDQLEGLALKRAQLIAGVTQ--SHLHLLVCEK-R---------RD----------HSAALNDLAQELRE--E 63 (290)
T ss_dssp CEEEEECCSSCSCCHHHHHHHHHHHHHC--CEEEEEEECS-S---------SC----------CHHHHHHHHHHHHH--T
T ss_pred ceEEEEeCCCccchHHHHHHHHHHHhcC--CeEEEEEeeC-c---------HH----------HHHHHHHHHHHHhh--C
Confidence 5899999999999888888877765544 5789999986 1 10 122232 2233322 4
Q ss_pred ceEEEEeEEeccCCChhHHHHHHHHhcCCcEEEecCCCCCCCCCCCccccccc-hhHHHHHhhccCCCceEEEecCCCCC
Q 003798 543 ELKFNAFTALAPMRSMYQNICELALDNKATLIILPFHKEYPNNLEGTQILRRG-VQSVNIKVLSHAPCSVGVLVDKGNFR 621 (794)
Q Consensus 543 ~v~v~~~~~vs~~~~m~~dI~~~A~~~~a~lIilp~h~~~~~d~~g~~~~~~~-~~~~n~~vl~~ApCsVgIlvdRg~~~ 621 (794)
+++++...... .+..+.|++.|+++++|+|++|.|++... .+. +++..+++++++||+|.|.- .+...
T Consensus 64 ~~~~~~~~~~~--g~~~~~i~~~a~~~~~dliV~G~~~~~~~--------~~~~~gs~~~~vl~~~~~PVlvv~-~~~~~ 132 (290)
T 3mt0_A 64 GYSVSTNQAWK--DSLHQTIIAEQQAEGCGLIIKQHFPDNPL--------KKAILTPDDWKLLRFAPCPVLMTK-TARPW 132 (290)
T ss_dssp TCCEEEEEECS--SSHHHHHHHHHHHHTCSEEEEECCCSCTT--------STTSCCHHHHHHHHHCSSCEEEEC-CCSCS
T ss_pred CCeEEEEEEeC--CCHHHHHHHHHHhcCCCEEEEecccCCch--------hhcccCHHHHHHHhcCCCCEEEec-CCCCC
Confidence 67776665532 47899999999999999999999965321 222 78999999999999997753 12111
Q ss_pred CCCcccCCCccceEEEEEecCCcc-------HHHHHHHHHHHhcCCCeEEEEEEeeccCCCC---C----chhhhhhHHH
Q 003798 622 NPMHAAGGSMRRHHFVVLFLGGAD-------AREALAYADRMVGNLDVSLTVIRFLSFNHEG---D----DEMEKKLDDG 687 (794)
Q Consensus 622 ~~~~~~~~~~~~~~I~v~f~GG~d-------DreAL~~A~rma~~~~v~ltvl~~~~~~~~~---~----~~~~~~~d~~ 687 (794)
..++|++++.|.++ .+.|+++|.++++..+.+++++|+.+..... . .+..++..++
T Consensus 133 ----------~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (290)
T 3mt0_A 133 ----------TGGKILAAVDVGNNDGEHRSLHAGIISHAYDIAGLAKATLHVISAHPSPMLSSADPTFQLSETIEARYRE 202 (290)
T ss_dssp ----------TTCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEC---------CHHHHHHHHHHHHH
T ss_pred ----------CCCeEEEEECCCCcchhhhHHHHHHHHHHHHHHHHcCCeEEEEEEecCccccccCchhHHHHHHHHHHHH
Confidence 24699999999998 7999999999999999999999998643211 0 0111233445
Q ss_pred HHHHHHhhcCCCCceEEEEEEecChHHH-HHHHHhhhccCcccEEEEecccCCCCccccccCCCCCCCccchhhhhhhcc
Q 003798 688 LVTWFWVKNESNERVRYREVVVRNGAET-VASIQAVNDEAYCDLWIVGRYQGINGKLLEGLEAWSEDNELGVIGDYVASI 766 (794)
Q Consensus 688 ~l~~~~~~~~~~~~v~y~e~~v~~~~~~-~~~i~~~~~~~~~DL~iVGr~~~~~~~~~~gl~~w~e~~eLG~igd~las~ 766 (794)
.++++.+++... .+.+ .....+..+. .+..++ .+ +||+++|++++. |+.+| -+|-..+-+...
T Consensus 203 ~l~~~~~~~g~~-~~~~-~v~~g~~~~~I~~~a~~--~~--~dLiVmG~~g~~------~~~~~----~~Gsv~~~vl~~ 266 (290)
T 3mt0_A 203 ACRTFQAEYGFS-DEQL-HIEEGPADVLIPRTAQK--LD--AVVTVIGTVART------GLSGA----LIGNTAEVVLDT 266 (290)
T ss_dssp HHHHHHHHHTCC-TTTE-EEEESCHHHHHHHHHHH--HT--CSEEEEECCSSC------CGGGC----CSCHHHHHHHTT
T ss_pred HHHHHHHHcCCC-cceE-EEeccCHHHHHHHHHHh--cC--CCEEEECCCCCc------CCcce----ecchHHHHHHhc
Confidence 666666655321 1111 1111222222 222222 23 899999998643 23333 378888888876
Q ss_pred CCCCceeEEEEEeec
Q 003798 767 DFGSTASVLVMQQQV 781 (794)
Q Consensus 767 d~~~~~SvLvvqq~~ 781 (794)
++++||||..+.
T Consensus 267 ---~~~pVLvv~~~~ 278 (290)
T 3mt0_A 267 ---LESDVLVLKPDD 278 (290)
T ss_dssp ---CSSEEEEECCHH
T ss_pred ---CCCCEEEECCCC
Confidence 678999997653
No 3
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=99.51 E-value=8e-14 Score=148.51 Aligned_cols=267 Identities=14% Similarity=0.062 Sum_probs=167.9
Q ss_pred ceeEEEeccCCchHHHHHHHHhhCCCCCCCceEEEEEEeeecCCCccccccccccC-CCCCCCcchHHHHHHHHhhhhcC
Q 003798 464 LRLVVCVHEEESVAGLINLLEVSCPTVDSPFSIYSLHLIELIGRGIPLLVDYENEE-HSPEYTNDDAIHNALKLYSETRG 542 (794)
Q Consensus 464 lriLv~v~~~~~~~~li~l~~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~-~~~~~~~~~~i~~af~~~~~~~~ 542 (794)
.|||+|++..++....++.+..++... ...++++|+++.+..... ........ ........++.++.+.+..+. .
T Consensus 23 ~~ILv~vD~s~~s~~al~~A~~lA~~~--~a~l~ll~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~ 98 (294)
T 3loq_A 23 NAMLLPTDLSENSFKVLEYLGDFKKVG--VEEIGVLFVINLTKLSTV-SGGIDIDHYIDEMSEKAEEVLPEVAQKIEA-A 98 (294)
T ss_dssp CEEEEECCSCTGGGGGGGGHHHHHHTT--CCEEEEECCEECTTC------CCCTTHHHHHHHHHHHHHHHHHHHHHHH-T
T ss_pred ccEEEecCCCHHHHHHHHHHHHHHhhc--CCEEEEEEEecCcccccc-cccccHHHHHHHHHHHHHHHHHHHHHHHHH-c
Confidence 589999999999988888887776543 378999999886432110 00000000 000111233444443333333 5
Q ss_pred ceEEEE-eEEeccCCChhHHHHHHHHhcCCcEEEecCCCCCCCCCCCccccccc-hhHHHHHhhccCCCceEEEecCCCC
Q 003798 543 ELKFNA-FTALAPMRSMYQNICELALDNKATLIILPFHKEYPNNLEGTQILRRG-VQSVNIKVLSHAPCSVGVLVDKGNF 620 (794)
Q Consensus 543 ~v~v~~-~~~vs~~~~m~~dI~~~A~~~~a~lIilp~h~~~~~d~~g~~~~~~~-~~~~n~~vl~~ApCsVgIlvdRg~~ 620 (794)
+++++. ... ...+..+.| .|+++++|+|++|.|++. ...+. ++++.+++++++||+|.|.- ++..
T Consensus 99 g~~~~~~~v~--~~g~~~~~I--~a~~~~~DliV~G~~g~~--------~~~~~~~Gs~~~~vl~~~~~PVlvv~-~~~~ 165 (294)
T 3loq_A 99 GIKAEVIKPF--PAGDPVVEI--IKASENYSFIAMGSRGAS--------KFKKILLGSVSEGVLHDSKVPVYIFK-HDMV 165 (294)
T ss_dssp TCEEEECSSC--CEECHHHHH--HHHHTTSSEEEEECCCCC--------HHHHHHHCCHHHHHHHHCSSCEEEEC-CCTT
T ss_pred CCCcceeEee--ccCChhHhe--eeccCCCCEEEEcCCCCc--------cccceeeccHHHHHHhcCCCCEEEec-Cccc
Confidence 677765 332 124778888 999999999999998542 11223 78899999999999997753 3221
Q ss_pred CCCCcccCCCccceEEEEEecCCccHHHHHHHHHHHhcCCCeEEEEEEeeccCCCCCchhhhhhHHHHHHHHHhhcCCCC
Q 003798 621 RNPMHAAGGSMRRHHFVVLFLGGADAREALAYADRMVGNLDVSLTVIRFLSFNHEGDDEMEKKLDDGLVTWFWVKNESNE 700 (794)
Q Consensus 621 ~~~~~~~~~~~~~~~I~v~f~GG~dDreAL~~A~rma~~~~v~ltvl~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~ 700 (794)
. .....+|++++.|.++++.|+++|.++++..+.+++++++.++.. .++.-+++.+.++.. +-
T Consensus 166 ~--------~~~~~~Ilv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~------~~~~l~~~~~~l~~~---~~ 228 (294)
T 3loq_A 166 V--------NSLFDRVLVAYDFSKWADRALEYAKFVVKKTGGELHIIHVSEDGD------KTADLRVMEEVIGAE---GI 228 (294)
T ss_dssp T--------TCTTSEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEECSSSC------CHHHHHHHHHHHHHT---TC
T ss_pred c--------CccCCEEEEEECCCHHHHHHHHHHHHHhhhcCCEEEEEEEccCch------HHHHHHHHHHHHHHc---CC
Confidence 1 012469999999999999999999999999999999999986532 112222333333332 11
Q ss_pred ceEEEEEEecChHHHHHHHHhhhccCcccEEEEecccCCCCccccccCCCCCCCccchhhhhhhccCCCCceeEEEEEee
Q 003798 701 RVRYREVVVRNGAETVASIQAVNDEAYCDLWIVGRYQGINGKLLEGLEAWSEDNELGVIGDYVASIDFGSTASVLVMQQQ 780 (794)
Q Consensus 701 ~v~y~e~~v~~~~~~~~~i~~~~~~~~~DL~iVGr~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~~~SvLvvqq~ 780 (794)
.+. ..+..| +..+.|.+..++..+||+++|++++. ++.+| -+|-..+-+... ++++||||.+.
T Consensus 229 ~~~---~~~~~g-~~~~~I~~~a~~~~~dLlV~G~~~~~------~~~~~----~~Gs~~~~vl~~---~~~pvLvv~~~ 291 (294)
T 3loq_A 229 EVH---VHIESG-TPHKAILAKREEINATTIFMGSRGAG------SVMTM----ILGSTSESVIRR---SPVPVFVCKRG 291 (294)
T ss_dssp CEE---EEEECS-CHHHHHHHHHHHTTCSEEEEECCCCS------CHHHH----HHHCHHHHHHHH---CSSCEEEECSC
T ss_pred cEE---EEEecC-CHHHHHHHHHHhcCcCEEEEeCCCCC------Cccce----eeCcHHHHHHhc---CCCCEEEECCC
Confidence 232 223344 34444444433111899999998642 12222 367777777766 67899999775
Q ss_pred c
Q 003798 781 V 781 (794)
Q Consensus 781 ~ 781 (794)
.
T Consensus 292 ~ 292 (294)
T 3loq_A 292 D 292 (294)
T ss_dssp T
T ss_pred C
Confidence 4
No 4
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=99.49 E-value=2.6e-13 Score=145.60 Aligned_cols=276 Identities=13% Similarity=0.129 Sum_probs=168.1
Q ss_pred CceeEEEeccCCchHHHHHHHHhhCCCCCCCceEEEEEEeeecCCCc-cc-cccccccCCCCCCCcchHHHHHHHH-hhh
Q 003798 463 ELRLVVCVHEEESVAGLINLLEVSCPTVDSPFSIYSLHLIELIGRGI-PL-LVDYENEEHSPEYTNDDAIHNALKL-YSE 539 (794)
Q Consensus 463 elriLv~v~~~~~~~~li~l~~~~~~~~~sp~~v~~lhLvel~~r~~-~~-~~~~~~~~~~~~~~~~~~i~~af~~-~~~ 539 (794)
..+||+|++..++....++.+..++...+ ..++++|+++ +.... +. ....+.. .......++.++.+.+ +.+
T Consensus 19 ~~~ILv~~D~s~~s~~al~~A~~lA~~~~--a~l~ll~v~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~ 93 (309)
T 3cis_A 19 SLGIIVGIDDSPAAQVAVRWAARDAELRK--IPLTLVHAVS-PEVATWLEVPLPPGVL--RWQQDHGRHLIDDALKVVEQ 93 (309)
T ss_dssp TTEEEEECCSSHHHHHHHHHHHHHHHHHT--CCEEEEEECC-CCCCCTTCCCCCHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCHHHHHHHHHHHHHHHhcC--CcEEEEEEec-CcccccccCCCCchhh--HHHHHHHHHHHHHHHHHHHH
Confidence 46899999999998888888877764333 5789999987 22111 00 0000000 0001112333332222 222
Q ss_pred h---cCceEEEEeEEeccCCChhHHHHHHHHhcCCcEEEecCCCCCCCCCCCccccccc-hhHHHHHhhccCCCceEEEe
Q 003798 540 T---RGELKFNAFTALAPMRSMYQNICELALDNKATLIILPFHKEYPNNLEGTQILRRG-VQSVNIKVLSHAPCSVGVLV 615 (794)
Q Consensus 540 ~---~~~v~v~~~~~vs~~~~m~~dI~~~A~~~~a~lIilp~h~~~~~d~~g~~~~~~~-~~~~n~~vl~~ApCsVgIlv 615 (794)
. ..+++++..... .+..+.|++.|+ ++|+||||.|++... .+. ++++.++|++++||+|-|.-
T Consensus 94 ~~~~~~~~~~~~~~~~---g~~~~~I~~~a~--~~DliV~G~~g~~~~--------~~~~~Gs~~~~vl~~~~~PVlvv~ 160 (309)
T 3cis_A 94 ASLRAGPPTVHSEIVP---AAAVPTLVDMSK--DAVLMVVGCLGSGRW--------PGRLLGSVSSGLLRHAHCPVVIIH 160 (309)
T ss_dssp HCSSSCCSCEEEEEES---SCHHHHHHHHGG--GEEEEEEESSCTTCC--------TTCCSCHHHHHHHHHCSSCEEEEC
T ss_pred hcccCCCceEEEEEec---CCHHHHHHHHhc--CCCEEEECCCCCccc--------cccccCcHHHHHHHhCCCCEEEEc
Confidence 1 115666665443 588999999996 899999999965321 223 88999999999999997763
Q ss_pred cCCCCCCCCcccCCCccceEEEEEecCCccHHHHHHHHHHHhcCCCeEEEEEEeeccCCCC---C-c-hhhhhhHHHHHH
Q 003798 616 DKGNFRNPMHAAGGSMRRHHFVVLFLGGADAREALAYADRMVGNLDVSLTVIRFLSFNHEG---D-D-EMEKKLDDGLVT 690 (794)
Q Consensus 616 dRg~~~~~~~~~~~~~~~~~I~v~f~GG~dDreAL~~A~rma~~~~v~ltvl~~~~~~~~~---~-~-~~~~~~d~~~l~ 690 (794)
.+.... ......+|++++.|.++++.|+++|.++++..+.+++++|+.++.... . + +...+..++.++
T Consensus 161 ~~~~~~-------~~~~~~~Ilv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~l~ 233 (309)
T 3cis_A 161 DEDSVM-------PHPQQAPVLVGVDGSSASELATAIAFDEASRRNVDLVALHAWSDVDVSEWPGIDWPATQSMAEQVLA 233 (309)
T ss_dssp TTCCCS-------CSSCCCCEEEECCSSHHHHHHHHHHHHHHHHTTCCEEEEEESCSSCCTTCSSCCHHHHHHHHHHHHH
T ss_pred CCcccC-------CCCCCCeEEEEeCCChHHHHHHHHHHHHHHhcCCEEEEEEEeecccccCCCcccHHHHHHHHHHHHH
Confidence 322110 011246999999999999999999999999999999999998643211 0 0 111122333444
Q ss_pred HHHhhcCC-CCceEEEEEEecChHHHHHHHHhhhccCcccEEEEecccCCCCccccccCCCCCCCccchhhhhhhccCCC
Q 003798 691 WFWVKNES-NERVRYREVVVRNGAETVASIQAVNDEAYCDLWIVGRYQGINGKLLEGLEAWSEDNELGVIGDYVASIDFG 769 (794)
Q Consensus 691 ~~~~~~~~-~~~v~y~e~~v~~~~~~~~~i~~~~~~~~~DL~iVGr~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~ 769 (794)
++..+... ...+.+... +..| +..+.|.+.+++ +||+++|++++. ++.+| -+|-..+-+...
T Consensus 234 ~~~~~~~~~~~~~~~~~~-~~~g-~~~~~I~~~a~~--adliV~G~~~~~------~~~~~----l~Gsv~~~vl~~--- 296 (309)
T 3cis_A 234 ERLAGWQERYPNVAITRV-VVRD-QPARQLVQRSEE--AQLVVVGSRGRG------GYAGM----LVGSVGETVAQL--- 296 (309)
T ss_dssp HHHTTHHHHCTTSCEEEE-EESS-CHHHHHHHHHTT--CSEEEEESSCSS------CCTTC----SSCHHHHHHHHH---
T ss_pred HHHHHHHhhCCCCcEEEE-EEcC-CHHHHHHHhhCC--CCEEEECCCCCC------Ccccc----ccCcHHHHHHhc---
Confidence 44332210 011222223 3344 344555555556 999999998642 22222 378888888766
Q ss_pred CceeEEEEEee
Q 003798 770 STASVLVMQQQ 780 (794)
Q Consensus 770 ~~~SvLvvqq~ 780 (794)
++++||||..+
T Consensus 297 ~~~pVlvv~~~ 307 (309)
T 3cis_A 297 ARTPVIVARES 307 (309)
T ss_dssp CSSCEEEECC-
T ss_pred CCCCEEEeCCC
Confidence 67899999653
No 5
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=99.48 E-value=1.4e-13 Score=148.10 Aligned_cols=276 Identities=14% Similarity=0.101 Sum_probs=169.4
Q ss_pred ceeEEEeccCCchHHHHHHHHhhCCCCCCCceEEEEEEeeecCC-CccccccccccC-CCCCCCcchHHHHHHHHhhhhc
Q 003798 464 LRLVVCVHEEESVAGLINLLEVSCPTVDSPFSIYSLHLIELIGR-GIPLLVDYENEE-HSPEYTNDDAIHNALKLYSETR 541 (794)
Q Consensus 464 lriLv~v~~~~~~~~li~l~~~~~~~~~sp~~v~~lhLvel~~r-~~~~~~~~~~~~-~~~~~~~~~~i~~af~~~~~~~ 541 (794)
.+||+|++..++....++.+..++...+ ..++++|+++-... ............ ........++.++.+.+....
T Consensus 8 k~ILv~~D~s~~s~~al~~A~~lA~~~~--a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~- 84 (319)
T 3olq_A 8 QNLLVVIDPNQDDQPALRRAVYIVQRNG--GRIKAFLPVYDLSYDMTTLLSPDERNAMRKGVINQKTAWIKQQARYYLE- 84 (319)
T ss_dssp CEEEEECCTTCSCCHHHHHHHHHHHHHC--CEEEEEEEECCGGGGCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred ceEEEEECCCcccHHHHHHHHHHHHHcC--CeEEEEEEecccchhhccccChhhHHHHHHHHHHHHHHHHHHHHHHHhh-
Confidence 5899999999998888888877765443 68999999762110 000000000000 000001112223222222112
Q ss_pred CceEEEEeEEeccCCChhHHHHHHHHhcCCcEEEecCCCCCCCCCCCccccccc-hhHHHHHhhccCCCceEEEecCCCC
Q 003798 542 GELKFNAFTALAPMRSMYQNICELALDNKATLIILPFHKEYPNNLEGTQILRRG-VQSVNIKVLSHAPCSVGVLVDKGNF 620 (794)
Q Consensus 542 ~~v~v~~~~~vs~~~~m~~dI~~~A~~~~a~lIilp~h~~~~~d~~g~~~~~~~-~~~~n~~vl~~ApCsVgIlvdRg~~ 620 (794)
.+++++..... ..+..+.|++.|+++++||||+|+|++.. ..+. +++..++|++++||+|.|.-++. .
T Consensus 85 ~~v~~~~~~~~--~g~~~~~i~~~a~~~~~DLiV~G~~g~~~--------~~~~~~Gs~~~~vl~~~~~PVlvv~~~~-~ 153 (319)
T 3olq_A 85 AGIQIDIKVIW--HNRPYEAIIEEVITDKHDLLIKMAHQHDK--------LGSLIFTPLDWQLLRKCPAPVWMVKDKE-W 153 (319)
T ss_dssp TTCCEEEEEEE--CSCHHHHHHHHHHHHTCSEEEEEEBCC----------CCSCBCCHHHHHHHHHCSSCEEEEESSC-C
T ss_pred cCCeEEEEEEe--cCChHHHHHHHHHhcCCCEEEEecCcCch--------hhcccccccHHHHHhcCCCCEEEecCcc-c
Confidence 56777766652 25889999999999999999999996522 1233 78999999999999997753322 1
Q ss_pred CCCCcccCCCccceEEEEEecCCcc-------HHHHHHHHHHHhcCC--CeEEEEEEeeccCCCC-------Cc-----h
Q 003798 621 RNPMHAAGGSMRRHHFVVLFLGGAD-------AREALAYADRMVGNL--DVSLTVIRFLSFNHEG-------DD-----E 679 (794)
Q Consensus 621 ~~~~~~~~~~~~~~~I~v~f~GG~d-------DreAL~~A~rma~~~--~v~ltvl~~~~~~~~~-------~~-----~ 679 (794)
....+|++++.|.++ ++.|+++|.++++.. +.+++++|+.+..... .+ +
T Consensus 154 ----------~~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~ 223 (319)
T 3olq_A 154 ----------PEYGTIVVAANLSNEESYHDALNLKLIELTNDLSHRIQKDPDVHLLSAYPVAPINIAIELPDFDPNLYNN 223 (319)
T ss_dssp ----------CTTCEEEEECCCSCCSTHHHHHHHHHHHHHHHHHHHHCSSCCEEEEEEECCCSCSCCTTCTTCCHHHHHH
T ss_pred ----------ccCCeEEEEECCCCcchhHHHHHHHHHHHHHHHHHhccCCCeEEEEEeecCcchhhhccCCcccHHHHHH
Confidence 123699999999995 599999999999876 9999999998653211 00 1
Q ss_pred hhhhhHHHHHHHHHhhcCCCCceEEEEEEecChHHHHHHHHhhhccCcccEEEEecccCCCCccccccCCCCCCCccchh
Q 003798 680 MEKKLDDGLVTWFWVKNESNERVRYREVVVRNGAETVASIQAVNDEAYCDLWIVGRYQGINGKLLEGLEAWSEDNELGVI 759 (794)
Q Consensus 680 ~~~~~d~~~l~~~~~~~~~~~~v~y~e~~v~~~~~~~~~i~~~~~~~~~DL~iVGr~~~~~~~~~~gl~~w~e~~eLG~i 759 (794)
..++..++.++++..++... .+.+. +..| +....|.+.+++...||+++|++++. |+.+| -+|-.
T Consensus 224 ~~~~~~~~~l~~~~~~~~~~-~~~~~---v~~g-~~~~~I~~~a~~~~~dLiV~G~~g~~------~~~~~----~~Gsv 288 (319)
T 3olq_A 224 ALRGQHLIAMKELRQKFSIP-EEKTH---VKEG-LPEQVIPQVCEELNAGIVVLGILGRT------GLSAA----FLGNT 288 (319)
T ss_dssp HHHHHHHHHHHHHHHHTTCC-GGGEE---EEES-CHHHHHHHHHHHTTEEEEEEECCSCC------STHHH----HHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCC-cccEE---EecC-CcHHHHHHHHHHhCCCEEEEeccCcc------CCccc----cccHH
Confidence 11223345666666655322 22111 2223 22334433333111799999997542 12222 36888
Q ss_pred hhhhhccCCCCceeEEEEEeec
Q 003798 760 GDYVASIDFGSTASVLVMQQQV 781 (794)
Q Consensus 760 gd~las~d~~~~~SvLvvqq~~ 781 (794)
.+-+... ++++||||..+.
T Consensus 289 ~~~vl~~---~~~pVLvv~~~~ 307 (319)
T 3olq_A 289 AEQLIDH---IKCDLLAIKPDG 307 (319)
T ss_dssp HHHHHTT---CCSEEEEECCTT
T ss_pred HHHHHhh---CCCCEEEECCCC
Confidence 8888866 678999997654
No 6
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=99.44 E-value=1.1e-12 Score=137.49 Aligned_cols=254 Identities=14% Similarity=0.129 Sum_probs=162.1
Q ss_pred eeEEEeccCCchHHHHHHHHhhCCCCCCCceEEEEEEeeecCCCccccccccccCCC----------CCCCcchHHHHHH
Q 003798 465 RLVVCVHEEESVAGLINLLEVSCPTVDSPFSIYSLHLIELIGRGIPLLVDYENEEHS----------PEYTNDDAIHNAL 534 (794)
Q Consensus 465 riLv~v~~~~~~~~li~l~~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~----------~~~~~~~~i~~af 534 (794)
|||+|++..++....++.+..++...+ ..++++|+++......+-.......... ......++.++.+
T Consensus 2 ~ILv~vD~s~~s~~al~~A~~lA~~~~--a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 79 (268)
T 3ab8_A 2 RILLATDGSPQARGAEALAEWLAYKLS--APLTVLFVVDTRLARIPELLDFGALTVPVPVLRTELERALALRGEAVLERV 79 (268)
T ss_dssp CEEEECCSCGGGHHHHHHHHHHHHHHT--CCEEEEEEEEHHHHTHHHHC-------CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEcCCCHHHHHHHHHHHHHHHHhC--CcEEEEEEeccCCcccccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 799999999999999888877765433 6789999987432100000000000000 0001123344333
Q ss_pred HHhhhhcCceEEEEeEEeccCCChhHHHHHHHHhcCCcEEEecCCCCC-CCCCCCccccccc-hhHHHHHhhccCCCceE
Q 003798 535 KLYSETRGELKFNAFTALAPMRSMYQNICELALDNKATLIILPFHKEY-PNNLEGTQILRRG-VQSVNIKVLSHAPCSVG 612 (794)
Q Consensus 535 ~~~~~~~~~v~v~~~~~vs~~~~m~~dI~~~A~~~~a~lIilp~h~~~-~~d~~g~~~~~~~-~~~~n~~vl~~ApCsVg 612 (794)
.+..+. .+++++..... .+..+.|++. ++++|+|+||.|++. .. .+. ++++.++|++++||||-
T Consensus 80 ~~~~~~-~g~~~~~~~~~---g~~~~~I~~~--~~~~dliV~G~~g~~~~~--------~~~~~Gs~~~~v~~~a~~PVl 145 (268)
T 3ab8_A 80 RQSALA-AGVAVEAVLEE---GVPHEAILRR--ARAADLLVLGRSGEAHGD--------GFGGLGSTADRVLRASPVPVL 145 (268)
T ss_dssp HHHHHH-TTCCEEEEEEE---ECHHHHHHHH--HTTCSEEEEESSCTTSCT--------TCCSCCHHHHHHHHHCSSCEE
T ss_pred HHHHHh-CCCCeEEEEec---CCHHHHHHhh--ccCCCEEEEeccCCCccc--------cccccchhHHHHHHhCCCCEE
Confidence 333222 45666665543 4789999998 889999999999653 21 223 88999999999999996
Q ss_pred EEecCCCCCCCCcccCCCccceEEEEEecCCccHHHHHHHHHHHhcCCCeEEEEEEeeccCCCCCchhhhhhHHHHHHHH
Q 003798 613 VLVDKGNFRNPMHAAGGSMRRHHFVVLFLGGADAREALAYADRMVGNLDVSLTVIRFLSFNHEGDDEMEKKLDDGLVTWF 692 (794)
Q Consensus 613 IlvdRg~~~~~~~~~~~~~~~~~I~v~f~GG~dDreAL~~A~rma~~~~v~ltvl~~~~~~~~~~~~~~~~~d~~~l~~~ 692 (794)
|. .++.. ...+|++++.|.++++.|+++|.++++..+.+++++|+.++. +..++.-++..+.+
T Consensus 146 vv-~~~~~-----------~~~~ilv~~d~s~~~~~al~~a~~la~~~~a~l~ll~v~~~~-----~~~~~~l~~~~~~l 208 (268)
T 3ab8_A 146 LA-PGEPV-----------ELEGALLGYDASESAVRALHALAPLARALGLGVRVVSVHEDP-----ARAEAWALEAEAYL 208 (268)
T ss_dssp EE-CSSCC-----------CCCEEEEECCSCHHHHHHHHHHHHHHHHHTCCEEEEEECSSH-----HHHHHHHHHHHHHH
T ss_pred EE-CCCCC-----------CCCEEEEEECCCHHHHHHHHHHHHhhhcCCCEEEEEEEcCcH-----HHHHHHHHHHHHHH
Confidence 65 32221 135999999999999999999999999889999999997532 11112222333333
Q ss_pred HhhcCCCCceEEEEEEecChHHHHHHHHhhhccCcccEEEEecccCCCCccccccCCCCCCCccchhhhhhhccCCCCce
Q 003798 693 WVKNESNERVRYREVVVRNGAETVASIQAVNDEAYCDLWIVGRYQGINGKLLEGLEAWSEDNELGVIGDYVASIDFGSTA 772 (794)
Q Consensus 693 ~~~~~~~~~v~y~e~~v~~~~~~~~~i~~~~~~~~~DL~iVGr~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~~~ 772 (794)
... +-.+.+ . +..| +..+.|.+..++ +||+++|+ ++.+| -+|-..+-+... +++
T Consensus 209 ~~~---~~~~~~--~-~~~g-~~~~~i~~~a~~--~dliV~G~----------~~~~~----~~Gs~~~~vl~~---~~~ 262 (268)
T 3ab8_A 209 RDH---GVEASA--L-VLGG-DAADHLLRLQGP--GDLLALGA----------PVRRL----VFGSTAERVIRN---AQG 262 (268)
T ss_dssp HHT---TCCEEE--E-EECS-CHHHHHHHHCCT--TEEEEEEC----------CCSCC----SSCCHHHHHHHH---CSS
T ss_pred HHc---CCceEE--E-EeCC-ChHHHHHHHHHh--CCEEEECC----------ccccc----EeccHHHHHHhc---CCC
Confidence 321 112322 2 2344 456677777777 79999999 22222 368787777766 677
Q ss_pred eEEEE
Q 003798 773 SVLVM 777 (794)
Q Consensus 773 SvLvv 777 (794)
+||||
T Consensus 263 pvlvv 267 (268)
T 3ab8_A 263 PVLTA 267 (268)
T ss_dssp CEEEE
T ss_pred CEEEe
Confidence 89887
No 7
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=98.48 E-value=2.7e-07 Score=86.24 Aligned_cols=136 Identities=21% Similarity=0.164 Sum_probs=86.5
Q ss_pred ceeEEEeccCCc--hHHHHHHHHhhCCCCCCCceEEEEEEeeecCCCccccccccccCCCCCCCcchHHHHHHHHhhhhc
Q 003798 464 LRLVVCVHEEES--VAGLINLLEVSCPTVDSPFSIYSLHLIELIGRGIPLLVDYENEEHSPEYTNDDAIHNALKLYSETR 541 (794)
Q Consensus 464 lriLv~v~~~~~--~~~li~l~~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~ 541 (794)
-|||+|++..++ ....++.+..++...+ ..++++|+++.............. .........++..+.++++.+..
T Consensus 2 k~ILv~vD~s~~~~s~~al~~a~~la~~~~--a~l~ll~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~ 78 (143)
T 3fdx_A 2 NAILVPIDISDKEFTERIISHVESEARIDD--AEVHFLTVIPSLPYYASLGMAYTA-ELPGMDELREGSETQLKEIAKKF 78 (143)
T ss_dssp CEEEEECCTTCSSCCTTHHHHHHHHHHHHT--CEEEEEEEECC-----------------CHHHHHHHHHHHHHHHHTTS
T ss_pred CEEEEEecCChHhhHHHHHHHHHHHHHhcC--CeEEEEEEecCCcccccccccccc-hhhhHHHHHHHHHHHHHHHHHHc
Confidence 479999999988 7888887766654333 689999998854321110000000 00011122345555566655543
Q ss_pred --CceEEEEeEEeccCCChhHHHHHHHHhcCCcEEEecCCCCCCCCCCCccccccc-hhHHHHHhhccCCCceEEE
Q 003798 542 --GELKFNAFTALAPMRSMYQNICELALDNKATLIILPFHKEYPNNLEGTQILRRG-VQSVNIKVLSHAPCSVGVL 614 (794)
Q Consensus 542 --~~v~v~~~~~vs~~~~m~~dI~~~A~~~~a~lIilp~h~~~~~d~~g~~~~~~~-~~~~n~~vl~~ApCsVgIl 614 (794)
..+.++..... .+..+.|++.|+++++|+|+||.|+ . +. .+. ++++.++|++++||||-|+
T Consensus 79 ~~~~~~v~~~~~~---g~~~~~I~~~a~~~~~dliV~G~~~-~-----~~---~~~~~Gs~~~~v~~~~~~pVlvv 142 (143)
T 3fdx_A 79 SIPEDRMHFHVAE---GSPKDKILALAKSLPADLVIIASHR-P-----DI---TTYLLGSNAAAVVRHAECSVLVV 142 (143)
T ss_dssp CCCGGGEEEEEEE---SCHHHHHHHHHHHTTCSEEEEESSC-T-----TC---CSCSSCHHHHHHHHHCSSEEEEE
T ss_pred CCCCCceEEEEEe---cChHHHHHHHHHHhCCCEEEEeCCC-C-----CC---eeeeeccHHHHHHHhCCCCEEEe
Confidence 23455555544 4889999999999999999999984 2 11 223 8899999999999999764
No 8
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=98.46 E-value=1.4e-07 Score=88.57 Aligned_cols=137 Identities=16% Similarity=0.136 Sum_probs=89.0
Q ss_pred ceeEEEeccCCchHHHHHHHHhhCCCCCCCceEEEEEEeeecCCCccccccccccCCCCCCCcchHHHHHHHHhhhhcCc
Q 003798 464 LRLVVCVHEEESVAGLINLLEVSCPTVDSPFSIYSLHLIELIGRGIPLLVDYENEEHSPEYTNDDAIHNALKLYSETRGE 543 (794)
Q Consensus 464 lriLv~v~~~~~~~~li~l~~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~~ 543 (794)
.|||+|++..++....++.+..++...+ ..++++|+++........................++.++.+.+..+. .+
T Consensus 6 ~~ILv~~D~s~~s~~al~~A~~la~~~~--a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~g 82 (146)
T 3s3t_A 6 TNILVPVDSSDAAQAAFTEAVNIAQRHQ--ANLTALYVVDDSAYHTPALDPVLSELLDAEAAHAKDAMRQRQQFVAT-TS 82 (146)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHHHT--CEEEEEEEEECCCCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SS
T ss_pred ceEEEEcCCCHHHHHHHHHHHHHHHhcC--CEEEEEEEecCccccccccccccHHHHHHHHHHHHHHHHHHHHHHHh-cC
Confidence 5899999999998888888877764433 68999999986543211100000000000112233444443333222 35
Q ss_pred e-EEEEeEEeccCCChhHHHHH-HHHhcCCcEEEecCCCCCCCCCCCccccccc-hhHHHHHhhccCCCceEEE
Q 003798 544 L-KFNAFTALAPMRSMYQNICE-LALDNKATLIILPFHKEYPNNLEGTQILRRG-VQSVNIKVLSHAPCSVGVL 614 (794)
Q Consensus 544 v-~v~~~~~vs~~~~m~~dI~~-~A~~~~a~lIilp~h~~~~~d~~g~~~~~~~-~~~~n~~vl~~ApCsVgIl 614 (794)
+ .++..... .+..+.|++ .|++.++|+|+||.|++... .+. ++++.++|++++||||-|.
T Consensus 83 ~~~~~~~~~~---g~~~~~I~~~~a~~~~~dliV~G~~~~~~~--------~~~~~Gs~~~~vl~~~~~pVlvV 145 (146)
T 3s3t_A 83 APNLKTEISY---GIPKHTIEDYAKQHPEIDLIVLGATGTNSP--------HRVAVGSTTSYVVDHAPCNVIVI 145 (146)
T ss_dssp CCCCEEEEEE---ECHHHHHHHHHHHSTTCCEEEEESCCSSCT--------TTCSSCHHHHHHHHHCSSEEEEE
T ss_pred CcceEEEEec---CChHHHHHHHHHhhcCCCEEEECCCCCCCc--------ceEEEcchHHHHhccCCCCEEEe
Confidence 6 66655544 378999999 99999999999999965321 223 8899999999999999764
No 9
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=98.46 E-value=6.5e-07 Score=85.43 Aligned_cols=129 Identities=14% Similarity=0.121 Sum_probs=88.5
Q ss_pred CceeEEEecc-CCchHHHHHHHHhhCCCCCCCceEEEEEEeeecCCCccccccccccCCCCCCCcchHHHHHHHHhhhhc
Q 003798 463 ELRLVVCVHE-EESVAGLINLLEVSCPTVDSPFSIYSLHLIELIGRGIPLLVDYENEEHSPEYTNDDAIHNALKLYSETR 541 (794)
Q Consensus 463 elriLv~v~~-~~~~~~li~l~~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~ 541 (794)
-.+||+|++. .+.....++.+..++...+ ..++++|+++..+... . . .....++.++.+.+..+.
T Consensus 24 ~~~ILv~vD~~s~~s~~al~~A~~la~~~~--a~l~llhV~~~~~~~~-----~-~-----~~~~~~~~l~~~~~~~~~- 89 (155)
T 3dlo_A 24 YMPIVVAVDKKSDRAERVLRFAAEEARLRG--VPVYVVHSLPGGGRTK-----D-E-----DIIEAKETLSWAVSIIRK- 89 (155)
T ss_dssp CCCEEEECCSSSHHHHHHHHHHHHHHHHHT--CCEEEEEEECCSTTSC-----H-H-----HHHHHHHHHHHHHHHHHH-
T ss_pred cCeEEEEECCCCHHHHHHHHHHHHHHHhcC--CEEEEEEEEcCCCccc-----H-H-----HHHHHHHHHHHHHHHHHh-
Confidence 4589999999 8888888888877765433 5789999988433110 0 0 111234444443333333
Q ss_pred CceEEEEeEEeccCCChhHHHHHHHHhcCCcEEEecCCCCCCCCCCCccccccc-hhHHHHHhhccCCCceEEE
Q 003798 542 GELKFNAFTALAPMRSMYQNICELALDNKATLIILPFHKEYPNNLEGTQILRRG-VQSVNIKVLSHAPCSVGVL 614 (794)
Q Consensus 542 ~~v~v~~~~~vs~~~~m~~dI~~~A~~~~a~lIilp~h~~~~~d~~g~~~~~~~-~~~~n~~vl~~ApCsVgIl 614 (794)
.++.++..+.+. ..+..+.|++.|++.++|+|+||.|++... .+. ++++.++|++++||||-|.
T Consensus 90 ~g~~~~~~~~v~-~G~~~~~I~~~a~~~~~DLIV~G~~g~~~~--------~~~~lGSv~~~vl~~a~~PVLvV 154 (155)
T 3dlo_A 90 EGAEGEEHLLVR-GKEPPDDIVDFADEVDAIAIVIGIRKRSPT--------GKLIFGSVARDVILKANKPVICI 154 (155)
T ss_dssp TTCCEEEEEEES-SSCHHHHHHHHHHHTTCSEEEEECCEECTT--------SCEECCHHHHHHHHHCSSCEEEE
T ss_pred cCCCceEEEEec-CCCHHHHHHHHHHHcCCCEEEECCCCCCCC--------CCEEeccHHHHHHHhCCCCEEEe
Confidence 455665544442 368899999999999999999999865321 233 8899999999999999764
No 10
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=98.44 E-value=2.9e-07 Score=86.35 Aligned_cols=136 Identities=15% Similarity=0.074 Sum_probs=87.4
Q ss_pred ceeEEEeccCCchHHHHHHHHhhCCCCCCCceEEEEEEeeecCCCcccc--ccccccC--CCCCCCcchHHHHHHHHhhh
Q 003798 464 LRLVVCVHEEESVAGLINLLEVSCPTVDSPFSIYSLHLIELIGRGIPLL--VDYENEE--HSPEYTNDDAIHNALKLYSE 539 (794)
Q Consensus 464 lriLv~v~~~~~~~~li~l~~~~~~~~~sp~~v~~lhLvel~~r~~~~~--~~~~~~~--~~~~~~~~~~i~~af~~~~~ 539 (794)
.|||+|+...++....++.+..++...+ ..++++|+++......... ....... ........++.++.+.+..+
T Consensus 3 ~~ILv~vD~s~~s~~al~~A~~la~~~~--a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 80 (147)
T 3hgm_A 3 NRIMVPVDGSKGAVKALEKGVGLQQLTG--AELYILCVFKHHSLLEASLSMARPEQLDIPDDALKDYATEIAVQAKTRAT 80 (147)
T ss_dssp SEEEEECCSBHHHHHHHHHHHHHHHHHC--CEEEEEEEECCHHHHHHTBSSCCCGGGCCCTTHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHHHhcC--CEEEEEEEecCcccccccccccChhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3799999999988888888877765433 6899999987532000000 0000000 00011223444444444333
Q ss_pred hcCceEE---EEeEEeccCCChhHHHHHHHHhcCCcEEEecCCCCCCCCCCCccccccc-hhHHHHHhhccCCCceEE
Q 003798 540 TRGELKF---NAFTALAPMRSMYQNICELALDNKATLIILPFHKEYPNNLEGTQILRRG-VQSVNIKVLSHAPCSVGV 613 (794)
Q Consensus 540 ~~~~v~v---~~~~~vs~~~~m~~dI~~~A~~~~a~lIilp~h~~~~~d~~g~~~~~~~-~~~~n~~vl~~ApCsVgI 613 (794)
. .++++ +..... .+..+.|++.|+++++|+|+||.|++... .+. ++++.++|++++||||-|
T Consensus 81 ~-~g~~~~~~~~~~~~---g~~~~~I~~~a~~~~~dliV~G~~~~~~~--------~~~~~Gs~~~~vl~~~~~pVlv 146 (147)
T 3hgm_A 81 E-LGVPADKVRAFVKG---GRPSRTIVRFARKRECDLVVIGAQGTNGD--------KSLLLGSVAQRVAGSAHCPVLV 146 (147)
T ss_dssp H-TTCCGGGEEEEEEE---SCHHHHHHHHHHHTTCSEEEECSSCTTCC--------SCCCCCHHHHHHHHHCSSCEEE
T ss_pred h-cCCCccceEEEEec---CCHHHHHHHHHHHhCCCEEEEeCCCCccc--------cceeeccHHHHHHhhCCCCEEE
Confidence 3 44554 544443 47899999999999999999999965321 223 889999999999999865
No 11
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=98.42 E-value=1.2e-06 Score=83.75 Aligned_cols=137 Identities=15% Similarity=0.093 Sum_probs=87.7
Q ss_pred ceeEEEeccCCchHHHHHHHHhhCCCCCCCceEEEEEEeeecC----CCcccc-----c-ccc---c-cCCCCCCCcchH
Q 003798 464 LRLVVCVHEEESVAGLINLLEVSCPTVDSPFSIYSLHLIELIG----RGIPLL-----V-DYE---N-EEHSPEYTNDDA 529 (794)
Q Consensus 464 lriLv~v~~~~~~~~li~l~~~~~~~~~sp~~v~~lhLvel~~----r~~~~~-----~-~~~---~-~~~~~~~~~~~~ 529 (794)
.|||+|++..++....++.+..++...+ ..++++|+++... ...+.- . +.+ . ..........++
T Consensus 6 ~~ILv~vD~s~~s~~al~~a~~la~~~~--a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (162)
T 1mjh_A 6 KKILYPTDFSETAEIALKHVKAFKTLKA--EEVILLHVIDEREIKKRDIFSLLLGVAGLNKSVEEFENELKNKLTEEAKN 83 (162)
T ss_dssp CEEEEECCSCHHHHHHHHHHHHTCCSSC--CEEEEEEEEEGGGTC-----------------CHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhcC--CeEEEEEEecCccccccccccccccccccccchhhhHHHHHHHHHHHHHH
Confidence 4899999999999999999988876543 7899999987430 000000 0 000 0 000000011223
Q ss_pred HHHHHHHhhhhcCceEEEEeEEeccCCChhHHHHHHHHhcCCcEEEecCCCCCCCCCCCccccccc-hhHHHHHhhccCC
Q 003798 530 IHNALKLYSETRGELKFNAFTALAPMRSMYQNICELALDNKATLIILPFHKEYPNNLEGTQILRRG-VQSVNIKVLSHAP 608 (794)
Q Consensus 530 i~~af~~~~~~~~~v~v~~~~~vs~~~~m~~dI~~~A~~~~a~lIilp~h~~~~~d~~g~~~~~~~-~~~~n~~vl~~Ap 608 (794)
.++.+.+..+. .+++++..... .+..+.|++.|+++++|+|+||.|++... .+. ++++.++|++++|
T Consensus 84 ~l~~~~~~~~~-~g~~~~~~v~~---G~~~~~I~~~a~~~~~dlIV~G~~g~~~~--------~~~~~GSv~~~vl~~~~ 151 (162)
T 1mjh_A 84 KMENIKKELED-VGFKVKDIIVV---GIPHEEIVKIAEDEGVDIIIMGSHGKTNL--------KEILLGSVTENVIKKSN 151 (162)
T ss_dssp HHHHHHHHHHH-TTCEEEEEEEE---ECHHHHHHHHHHHTTCSEEEEESCCSSCC--------TTCSSCHHHHHHHHHCC
T ss_pred HHHHHHHHHHH-cCCceEEEEcC---CCHHHHHHHHHHHcCCCEEEEcCCCCCCc--------cceEecchHHHHHHhCC
Confidence 33333222222 45777665443 47899999999999999999999965321 233 8899999999999
Q ss_pred CceEEE
Q 003798 609 CSVGVL 614 (794)
Q Consensus 609 CsVgIl 614 (794)
|||-|.
T Consensus 152 ~pVlvv 157 (162)
T 1mjh_A 152 KPVLVV 157 (162)
T ss_dssp SCEEEE
T ss_pred CCEEEE
Confidence 999776
No 12
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=98.42 E-value=1.2e-06 Score=84.32 Aligned_cols=136 Identities=14% Similarity=0.038 Sum_probs=87.0
Q ss_pred CceeEEEeccCCchHHHHHHHHhhCCCCCCCceEEEE--EEeeecCCCccccccccccCCCCCCCcchHHHHHHHHhhhh
Q 003798 463 ELRLVVCVHEEESVAGLINLLEVSCPTVDSPFSIYSL--HLIELIGRGIPLLVDYENEEHSPEYTNDDAIHNALKLYSET 540 (794)
Q Consensus 463 elriLv~v~~~~~~~~li~l~~~~~~~~~sp~~v~~l--hLvel~~r~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~ 540 (794)
..|||+|++..++....++.+..++. .+ ..++++ |+++......+........ ........++.++.+.+..+.
T Consensus 17 ~~~ILv~vD~s~~s~~al~~A~~lA~-~~--a~l~ll~a~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~ 92 (163)
T 1tq8_A 17 YKTVVVGTDGSDSSMRAVDRAAQIAG-AD--AKLIIASAYLPQHEDARAADILKDESY-KVTGTAPIYEILHDAKERAHN 92 (163)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHHHT-TT--SEEEEEEECCC---------------------CCTHHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCHHHHHHHHHHHHHhC-CC--CEEEEEEeeeccCcccccccccccHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999998889998877775 43 688899 8776432101100000000 011223345555544443333
Q ss_pred cCceE-EEEeEEeccCCChhHHHHHHHHhcCCcEEEecCCCCCCCCCCCccccccc-hhHHHHHhhccCCCceEEE
Q 003798 541 RGELK-FNAFTALAPMRSMYQNICELALDNKATLIILPFHKEYPNNLEGTQILRRG-VQSVNIKVLSHAPCSVGVL 614 (794)
Q Consensus 541 ~~~v~-v~~~~~vs~~~~m~~dI~~~A~~~~a~lIilp~h~~~~~d~~g~~~~~~~-~~~~n~~vl~~ApCsVgIl 614 (794)
.+++ ++..... .+..+.|++.|++.++|+|+||.|++.. ..+. ++++.++|++++||||-|.
T Consensus 93 -~gv~~v~~~v~~---G~~~~~I~~~a~~~~~DLIV~G~~g~~~--------~~~~~lGSva~~vl~~a~~PVlvV 156 (163)
T 1tq8_A 93 -AGAKNVEERPIV---GAPVDALVNLADEEKADLLVVGNVGLST--------IAGRLLGSVPANVSRRAKVDVLIV 156 (163)
T ss_dssp -TTCCEEEEEEEC---SSHHHHHHHHHHHTTCSEEEEECCCCCS--------HHHHHTBBHHHHHHHHTTCEEEEE
T ss_pred -cCCCeEEEEEec---CCHHHHHHHHHHhcCCCEEEECCCCCCc--------ccceeeccHHHHHHHhCCCCEEEE
Confidence 4565 6655543 5789999999999999999999995521 1233 8899999999999999776
No 13
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=98.37 E-value=4.6e-07 Score=85.44 Aligned_cols=138 Identities=12% Similarity=0.068 Sum_probs=82.0
Q ss_pred ceeEEEeccCCchHHHHHHHHhhCCCCCCCceEEEEEEeeecCCCccccccccccC-CCCCCCcchHHHHHHHHhhhhcC
Q 003798 464 LRLVVCVHEEESVAGLINLLEVSCPTVDSPFSIYSLHLIELIGRGIPLLVDYENEE-HSPEYTNDDAIHNALKLYSETRG 542 (794)
Q Consensus 464 lriLv~v~~~~~~~~li~l~~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~-~~~~~~~~~~i~~af~~~~~~~~ 542 (794)
.|||+|+...++....++.+..++...+ ..++++|+++......+......... ........++..+.++++.+..
T Consensus 7 ~~ILv~vD~s~~s~~al~~a~~la~~~~--a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 83 (150)
T 3tnj_A 7 HHILLAVDFSSEDSQVVQKVRNLASQIG--ARLSLIHVLDNIPMPDTPYGTAIPLDTETTYDAMLDVEKQKLSQIGNTL- 83 (150)
T ss_dssp SEEEEECCCSTTHHHHHHHHHHHHHHHT--CEEEEEEEEC--------CTTCCCSSSCCCHHHHHHHHHHHHHHHHHHH-
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhcC--CEEEEEEEEcCccccccccccccCcCHHHHHHHHHHHHHHHHHHHHHHc-
Confidence 5899999999999999888877765433 68999999875321100000000000 0000111233334445444432
Q ss_pred ceE-EEEeEEeccCCChhHHHHHHHHhcCCcEEEecCCCCCCCCCCCccccccchhHHHHHhhccCCCceEEEe
Q 003798 543 ELK-FNAFTALAPMRSMYQNICELALDNKATLIILPFHKEYPNNLEGTQILRRGVQSVNIKVLSHAPCSVGVLV 615 (794)
Q Consensus 543 ~v~-v~~~~~vs~~~~m~~dI~~~A~~~~a~lIilp~h~~~~~d~~g~~~~~~~~~~~n~~vl~~ApCsVgIlv 615 (794)
+++ ++..... .+..+.|++.|+++++|+|+||.|++. .. ...++++.++|++++||+|-|.-
T Consensus 84 ~~~~~~~~~~~---g~~~~~I~~~a~~~~~dliV~G~~~~~------~~--~~~~Gs~~~~vl~~~~~pVlvv~ 146 (150)
T 3tnj_A 84 GIDPAHRWLVW---GEPREEIIRIAEQENVDLIVVGSHGRH------GL--ALLLGSTANSVLHYAKCDVLAVR 146 (150)
T ss_dssp TCCGGGEEEEE---SCHHHHHHHHHHHTTCSEEEEEEC----------------CCCHHHHHHHHCSSEEEEEE
T ss_pred CCCcceEEEec---CCHHHHHHHHHHHcCCCEEEEecCCCC------Cc--CeEecchHHHHHHhCCCCEEEEe
Confidence 222 2222222 478999999999999999999998552 11 21278899999999999997763
No 14
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=98.35 E-value=1.1e-06 Score=84.91 Aligned_cols=138 Identities=14% Similarity=0.073 Sum_probs=86.1
Q ss_pred ceeEEEeccCCchHHHHHHHHhhCCCCCCCceEEEEEEeeecCCCccc-ccc--c---cccCCCC---CCCcchHHHHHH
Q 003798 464 LRLVVCVHEEESVAGLINLLEVSCPTVDSPFSIYSLHLIELIGRGIPL-LVD--Y---ENEEHSP---EYTNDDAIHNAL 534 (794)
Q Consensus 464 lriLv~v~~~~~~~~li~l~~~~~~~~~sp~~v~~lhLvel~~r~~~~-~~~--~---~~~~~~~---~~~~~~~i~~af 534 (794)
.|||+|++..++....++.+..++...+ ..++++|+++........ -.. . ....... .....++.++.+
T Consensus 6 ~~ILv~vD~s~~s~~al~~A~~la~~~~--a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 83 (170)
T 2dum_A 6 RKVLFPTDFSEGAYRAVEVFEKRNKMEV--GEVILLHVIDEGTLEELMDGYSFFYDNAEIELKDIKEKLKEEASRKLQEK 83 (170)
T ss_dssp SEEEEECCSSHHHHHHHHHHHHHCCSCC--SEEEEEEEEETTGGGCCC------------CCTTSHHHHHHHHHHHHHHH
T ss_pred ceEEEEecCCHHHHHHHHHHHHHHHhcC--CEEEEEEEecCccccccccccccccccccccHHHHHHHHHHHHHHHHHHH
Confidence 4899999999999999999988876544 789999998742210000 000 0 0000000 001122333333
Q ss_pred HHhhhhcCceEEEE--eEEeccCCChhHHHHHHHHhcCCcEEEecCCCCCCCCCCCccccccc-hhHHHHHhhccCCCce
Q 003798 535 KLYSETRGELKFNA--FTALAPMRSMYQNICELALDNKATLIILPFHKEYPNNLEGTQILRRG-VQSVNIKVLSHAPCSV 611 (794)
Q Consensus 535 ~~~~~~~~~v~v~~--~~~vs~~~~m~~dI~~~A~~~~a~lIilp~h~~~~~d~~g~~~~~~~-~~~~n~~vl~~ApCsV 611 (794)
.+..+. .+++++. .... .+..+.|++.|+++++|+||||.|++... .+. ++++.++|++++||+|
T Consensus 84 ~~~~~~-~g~~~~~~~~~~~---g~~~~~I~~~a~~~~~DlIV~G~~g~~~~--------~~~~~Gsv~~~vl~~~~~PV 151 (170)
T 2dum_A 84 AEEVKR-AFRAKNVRTIIRF---GIPWDEIVKVAEEENVSLIILPSRGKLSL--------SHEFLGSTVMRVLRKTKKPV 151 (170)
T ss_dssp HHHHHH-HTTCSEEEEEEEE---ECHHHHHHHHHHHTTCSEEEEESCCCCC----------TTCCCHHHHHHHHHCSSCE
T ss_pred HHHHHH-cCCceeeeeEEec---CChHHHHHHHHHHcCCCEEEECCCCCCcc--------ccceechHHHHHHHhCCCCE
Confidence 222111 2445544 3332 47899999999999999999999965321 223 8899999999999999
Q ss_pred EEEe
Q 003798 612 GVLV 615 (794)
Q Consensus 612 gIlv 615 (794)
-|+-
T Consensus 152 lvv~ 155 (170)
T 2dum_A 152 LIIK 155 (170)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 7763
No 15
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=98.34 E-value=7e-07 Score=82.91 Aligned_cols=132 Identities=14% Similarity=0.077 Sum_probs=82.3
Q ss_pred ceeEEEeccCCchHHHHHHHHhhCCCCCCCceEEEEEEeeecCCCccccccccccCCCCCCCcchHHHHHHHHhhhhcCc
Q 003798 464 LRLVVCVHEEESVAGLINLLEVSCPTVDSPFSIYSLHLIELIGRGIPLLVDYENEEHSPEYTNDDAIHNALKLYSETRGE 543 (794)
Q Consensus 464 lriLv~v~~~~~~~~li~l~~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~~ 543 (794)
.|||+|++..++....++.+..++...+ ..++++|+++-.. . +. ..... ........++..+.++++.+. .+
T Consensus 3 ~~ILv~~D~s~~s~~al~~a~~la~~~~--a~l~ll~v~~~~~-~-~~-~~~~~--~~~~~~~~~~~~~~l~~~~~~-~g 74 (137)
T 2z08_A 3 KTILLAYDGSEHARRAAEVAKAEAEAHG--ARLIVVHAYEPVP-D-YL-GEPFF--EEALRRRLERAEGVLEEARAL-TG 74 (137)
T ss_dssp SEEEEECCSSHHHHHHHHHHHHHHHHHT--CEEEEEEEECC-------------------CHHHHHHHHHHHHHHHH-HC
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhcC--CEEEEEEEecCCC-c-cc-cccch--HHHHHHHHHHHHHHHHHHHHH-cC
Confidence 3799999999888888888877764333 6889999987211 0 10 00000 000011112233334444332 22
Q ss_pred e-EEEEeEEeccCCChhHHHHHHHHhcCCcEEEecCCCCCCCCCCCccccccc-hhHHHHHhhccCCCceEEE
Q 003798 544 L-KFNAFTALAPMRSMYQNICELALDNKATLIILPFHKEYPNNLEGTQILRRG-VQSVNIKVLSHAPCSVGVL 614 (794)
Q Consensus 544 v-~v~~~~~vs~~~~m~~dI~~~A~~~~a~lIilp~h~~~~~d~~g~~~~~~~-~~~~n~~vl~~ApCsVgIl 614 (794)
+ +++..... .+..+.|++.|+++++|+|+||.|++... .+. ++++.++|++++||||-|.
T Consensus 75 ~~~~~~~~~~---g~~~~~I~~~a~~~~~dliV~G~~~~~~~--------~~~~~Gs~~~~vl~~~~~pVlvv 136 (137)
T 2z08_A 75 VPKEDALLLE---GVPAEAILQAARAEKADLIVMGTRGLGAL--------GSLFLGSQSQRVVAEAPCPVLLV 136 (137)
T ss_dssp CCGGGEEEEE---SSHHHHHHHHHHHTTCSEEEEESSCTTCC--------SCSSSCHHHHHHHHHCSSCEEEE
T ss_pred CCccEEEEEe---cCHHHHHHHHHHHcCCCEEEECCCCCchh--------hhhhhccHHHHHHhcCCCCEEEe
Confidence 3 33333332 57899999999999999999999965321 223 8899999999999999764
No 16
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=98.29 E-value=7.6e-06 Score=76.49 Aligned_cols=128 Identities=14% Similarity=0.136 Sum_probs=83.4
Q ss_pred ceEEEEEecCCccHHHHHHHHHHHhcCCCeEEEEEEeeccCCCCCc----------hhhhhhHHHHHHHHHhhcCCCCce
Q 003798 633 RHHFVVLFLGGADAREALAYADRMVGNLDVSLTVIRFLSFNHEGDD----------EMEKKLDDGLVTWFWVKNESNERV 702 (794)
Q Consensus 633 ~~~I~v~f~GG~dDreAL~~A~rma~~~~v~ltvl~~~~~~~~~~~----------~~~~~~d~~~l~~~~~~~~~~~~v 702 (794)
.++|++++.|.++++.|+++|.++|+..+.+++++|+.+....... +..++..++.++++....... .+
T Consensus 5 ~~~ILv~~D~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-g~ 83 (146)
T 3s3t_A 5 YTNILVPVDSSDAAQAAFTEAVNIAQRHQANLTALYVVDDSAYHTPALDPVLSELLDAEAAHAKDAMRQRQQFVATT-SA 83 (146)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEEEECCCCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-SC
T ss_pred cceEEEEcCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCccccccccccccHHHHHHHHHHHHHHHHHHHHHHHhc-CC
Confidence 4699999999999999999999999999999999999875332111 112234455667666554322 22
Q ss_pred -EEEEEEecChHHHHHHHHh-hh--ccCcccEEEEecccCCCCccccccCCCCCCCccchhhhhhhccCCCCceeEEEEE
Q 003798 703 -RYREVVVRNGAETVASIQA-VN--DEAYCDLWIVGRYQGINGKLLEGLEAWSEDNELGVIGDYVASIDFGSTASVLVMQ 778 (794)
Q Consensus 703 -~y~e~~v~~~~~~~~~i~~-~~--~~~~~DL~iVGr~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~~~SvLvvq 778 (794)
.+... +..|. ....|.+ .+ .+ +||+|+|+++.. ++.+| -+|-..+-+... ++++||||.
T Consensus 84 ~~~~~~-~~~g~-~~~~I~~~~a~~~~--~dliV~G~~~~~------~~~~~----~~Gs~~~~vl~~---~~~pVlvV~ 146 (146)
T 3s3t_A 84 PNLKTE-ISYGI-PKHTIEDYAKQHPE--IDLIVLGATGTN------SPHRV----AVGSTTSYVVDH---APCNVIVIR 146 (146)
T ss_dssp CCCEEE-EEEEC-HHHHHHHHHHHSTT--CCEEEEESCCSS------CTTTC----SSCHHHHHHHHH---CSSEEEEEC
T ss_pred cceEEE-EecCC-hHHHHHHHHHhhcC--CCEEEECCCCCC------CcceE----EEcchHHHHhcc---CCCCEEEeC
Confidence 22222 22332 3333333 33 34 999999998642 11222 378888888877 678999984
No 17
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=98.28 E-value=2.4e-06 Score=79.56 Aligned_cols=133 Identities=14% Similarity=0.057 Sum_probs=83.0
Q ss_pred ceeEEEeccCCchHHHHHHHHhhCCCCCCCceEEEEEEeee-cCCCccccccccccCCCCCCCcchHHHHHHHHhhhhcC
Q 003798 464 LRLVVCVHEEESVAGLINLLEVSCPTVDSPFSIYSLHLIEL-IGRGIPLLVDYENEEHSPEYTNDDAIHNALKLYSETRG 542 (794)
Q Consensus 464 lriLv~v~~~~~~~~li~l~~~~~~~~~sp~~v~~lhLvel-~~r~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~ 542 (794)
.|||+|+...++....++.+..++...+ ..++++|+++- +..... ....... .......++..+.++++.+. .
T Consensus 3 ~~ILv~~D~s~~s~~al~~a~~la~~~~--a~l~ll~v~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~l~~~~~~-~ 76 (141)
T 1jmv_A 3 KHILVAVDLSEESPILLKKAVGIAKRHD--AKLSIIHVDVNFSDLYTG-LIDVNMS--SMQDRISTETQKALLDLAES-V 76 (141)
T ss_dssp SEEEEEECCSTTHHHHHHHHHHHHHHHT--CEEEEEEEEECCGGGCCC-CEEHHHH--HHTTCCCCHHHHHHHHHHHH-S
T ss_pred ceEEEEecCchhhHHHHHHHHHHHHhcC--CEEEEEEEecCchhhhcc-ccccchH--HHHHHHHHHHHHHHHHHHHH-c
Confidence 3799999999998888888877764333 68999999842 221111 0000000 00011112333334444433 2
Q ss_pred ceEE-EEeEEeccCCChhHHHHHHHHhcCCcEEEecCCCCCCCCCCCccccccchhHHHHHhhccCCCceEEEe
Q 003798 543 ELKF-NAFTALAPMRSMYQNICELALDNKATLIILPFHKEYPNNLEGTQILRRGVQSVNIKVLSHAPCSVGVLV 615 (794)
Q Consensus 543 ~v~v-~~~~~vs~~~~m~~dI~~~A~~~~a~lIilp~h~~~~~d~~g~~~~~~~~~~~n~~vl~~ApCsVgIlv 615 (794)
++++ +..... .+..+.|++.|++.++|+|+||.| +. ..+ .++++.++|++++||||-|.-
T Consensus 77 ~~~~~~~~~~~---g~~~~~I~~~a~~~~~dliV~G~~-~~------~~~---~lgs~~~~vl~~~~~pVlvv~ 137 (141)
T 1jmv_A 77 DYPISEKLSGS---GDLGQVLSDAIEQYDVDLLVTGHH-QD------FWS---KLMSSTRQVMNTIKIDMLVVP 137 (141)
T ss_dssp SSCCCCEEEEE---ECHHHHHHHHHHHTTCCEEEEEEC-CC------CHH---HHHHHHHHHHTTCCSEEEEEE
T ss_pred CCCceEEEEec---CCHHHHHHHHHHhcCCCEEEEeCC-Cc------hhh---hhcchHHHHHhcCCCCEEEee
Confidence 3333 222222 478999999999999999999998 52 111 168999999999999998864
No 18
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=98.27 E-value=3e-06 Score=82.25 Aligned_cols=142 Identities=13% Similarity=0.116 Sum_probs=83.2
Q ss_pred ceeEEEeccCC---------chHHHHHHHHhhCCCC-CCCceEEEEEEeeecCCCcc----ccc-cccccC-CCCCCCcc
Q 003798 464 LRLVVCVHEEE---------SVAGLINLLEVSCPTV-DSPFSIYSLHLIELIGRGIP----LLV-DYENEE-HSPEYTND 527 (794)
Q Consensus 464 lriLv~v~~~~---------~~~~li~l~~~~~~~~-~sp~~v~~lhLvel~~r~~~----~~~-~~~~~~-~~~~~~~~ 527 (794)
.|||+|+...+ .....++.+..+.... .....++++|+++....... ... ..+... ........
T Consensus 6 ~~ILv~vD~s~~~~~~~~~~~s~~al~~a~~la~~~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (175)
T 2gm3_A 6 TKVMVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSNTSDFKILLLHVQVVDEDGFDDVDSIYASPEDFRDMRQSNKAKG 85 (175)
T ss_dssp EEEEEECCBCSSSCTTCBCHHHHHHHHHHHHHTTTTCTTSEEEEEEEEEC----------CCCCSHHHHHHHTTSHHHHH
T ss_pred cEEEEEECCCcccccccccHHHHHHHHHHHHHhhcccCCCCEEEEEEEeecccccccccccccCCHHHHHHHHHHHHHHH
Confidence 58999999988 7788888887754222 13478999999863221000 000 000000 00000112
Q ss_pred hHHHHHHHHhhhhcCceEEEEeEEeccCCChhHHHHHHHHhcCCcEEEecCCCCCCCCCCCccccccc-hhHHHHHhhcc
Q 003798 528 DAIHNALKLYSETRGELKFNAFTALAPMRSMYQNICELALDNKATLIILPFHKEYPNNLEGTQILRRG-VQSVNIKVLSH 606 (794)
Q Consensus 528 ~~i~~af~~~~~~~~~v~v~~~~~vs~~~~m~~dI~~~A~~~~a~lIilp~h~~~~~d~~g~~~~~~~-~~~~n~~vl~~ 606 (794)
++.++.+.+..+. .+++++..+.. .+..+.|++.|+++++||||||.|++... .+. ++++.++|+++
T Consensus 86 ~~~l~~~~~~~~~-~g~~~~~~v~~---G~~~~~I~~~a~~~~~DLIVmG~~g~~~~--------~~~~~Gsva~~vl~~ 153 (175)
T 2gm3_A 86 LHLLEFFVNKCHE-IGVGCEAWIKT---GDPKDVICQEVKRVRPDFLVVGSRGLGRF--------QKVFVGTVSAFCVKH 153 (175)
T ss_dssp HHHHHHHHHHHHH-HTCEEEEEEEE---SCHHHHHHHHHHHHCCSEEEEEECCCC----------------CHHHHHHHH
T ss_pred HHHHHHHHHHHHH-CCCceEEEEec---CCHHHHHHHHHHHhCCCEEEEeCCCCChh--------hhhhcCchHHHHHhC
Confidence 3334333322222 35666655443 47899999999999999999999965211 223 88999999999
Q ss_pred CCCceEEEecC
Q 003798 607 APCSVGVLVDK 617 (794)
Q Consensus 607 ApCsVgIlvdR 617 (794)
+||+|-|+-..
T Consensus 154 a~~pVlvv~~~ 164 (175)
T 2gm3_A 154 AECPVMTIKRN 164 (175)
T ss_dssp CSSCEEEEECC
T ss_pred CCCCEEEEcCC
Confidence 99999886443
No 19
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=98.26 E-value=6.9e-07 Score=84.95 Aligned_cols=137 Identities=13% Similarity=0.113 Sum_probs=86.5
Q ss_pred CceeEEEec--cCCchHHHHHHHHhhCCCCCCCceEEEEEEeeecCCCccccccccccCCCCCCCcchHHHHHHHHhhhh
Q 003798 463 ELRLVVCVH--EEESVAGLINLLEVSCPTVDSPFSIYSLHLIELIGRGIPLLVDYENEEHSPEYTNDDAIHNALKLYSET 540 (794)
Q Consensus 463 elriLv~v~--~~~~~~~li~l~~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~ 540 (794)
-.|||+|++ ..++....++.+..++...+ ..++++|+++............+. ........++.++.+.+..+.
T Consensus 15 ~~~ILv~vD~~~s~~s~~al~~a~~la~~~~--a~l~ll~v~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~ 90 (156)
T 3fg9_A 15 YRRILLTVDEDDNTSSERAFRYATTLAHDYD--VPLGICSVLESEDINIFDSLTPSK--IQAKRKHVEDVVAEYVQLAEQ 90 (156)
T ss_dssp CC-EEEECCSCCCHHHHHHHHHHHHHHHHHT--CCEEEEEEECCCCTTCCCSSHHHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCHHHHHHHHHHHHHHHhcC--CEEEEEEEEeCCCccccccCCHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 458999999 99888888888877764433 678999999854321100000000 000111233444333332222
Q ss_pred cCce-EEEEeEEeccCCChhHHHHHH-HHhcCCcEEEecCCCCCCCCCCCccccccchhHHHHHhhccCCCceEEE
Q 003798 541 RGEL-KFNAFTALAPMRSMYQNICEL-ALDNKATLIILPFHKEYPNNLEGTQILRRGVQSVNIKVLSHAPCSVGVL 614 (794)
Q Consensus 541 ~~~v-~v~~~~~vs~~~~m~~dI~~~-A~~~~a~lIilp~h~~~~~d~~g~~~~~~~~~~~n~~vl~~ApCsVgIl 614 (794)
.++ .++.....+ .+..+.|++. |++.++|+|++|.|++.. .+ .-++++.++|++++||||-|.
T Consensus 91 -~g~~~~~~~v~~~--g~~~~~I~~~~a~~~~~DlIV~G~~g~~~------~~--~~~Gs~~~~vl~~a~~PVlvV 155 (156)
T 3fg9_A 91 -RGVNQVEPLVYEG--GDVDDVILEQVIPEFKPDLLVTGADTEFP------HS--KIAGAIGPRLARKAPISVIVV 155 (156)
T ss_dssp -HTCSSEEEEEEEC--SCHHHHHHHTHHHHHCCSEEEEETTCCCT------TS--SSCSCHHHHHHHHCSSEEEEE
T ss_pred -cCCCceEEEEEeC--CCHHHHHHHHHHHhcCCCEEEECCCCCCc------cc--eeecchHHHHHHhCCCCEEEe
Confidence 345 355555541 4789999999 999999999999996532 21 137889999999999998764
No 20
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=98.25 E-value=8.2e-06 Score=75.56 Aligned_cols=125 Identities=16% Similarity=0.139 Sum_probs=81.0
Q ss_pred eEEEEEecCCccHHHHHHHHHHHh-cCCCeEEEEEEeeccCCCCCc---------hhhh-hhHHHHHHHHHhhcCCCCce
Q 003798 634 HHFVVLFLGGADAREALAYADRMV-GNLDVSLTVIRFLSFNHEGDD---------EMEK-KLDDGLVTWFWVKNESNERV 702 (794)
Q Consensus 634 ~~I~v~f~GG~dDreAL~~A~rma-~~~~v~ltvl~~~~~~~~~~~---------~~~~-~~d~~~l~~~~~~~~~~~~v 702 (794)
++|++++.|.++++.|+++|.+++ +..+.+++++|+.++...... +..+ +..++.++++...... ..+
T Consensus 2 ~~ILv~~D~s~~s~~al~~a~~la~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~g~ 80 (138)
T 3idf_A 2 KKLLFAIDDTEACERAAQYILDMFGKDADCTLTLIHVKPEFMLYGEAVLAAYDEIEMKEEEKAKLLTQKFSTFFTE-KGI 80 (138)
T ss_dssp EEEEEECCSSHHHHHHHHHHHHHHTTCTTEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TTC
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHhccCCCCEEEEEEEecCCCcccccccCcHHHHHHHHHHHHHHHHHHHHHHHHH-CCC
Confidence 589999999999999999999999 999999999999875432110 0111 3344566666554432 222
Q ss_pred EEEEEEecChHHHHHHHHhhhccCcccEEEEecccCCCCccccccCCCCCCCccchhhhhhhccCCCCceeEEEE
Q 003798 703 RYREVVVRNGAETVASIQAVNDEAYCDLWIVGRYQGINGKLLEGLEAWSEDNELGVIGDYVASIDFGSTASVLVM 777 (794)
Q Consensus 703 ~y~e~~v~~~~~~~~~i~~~~~~~~~DL~iVGr~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~~~SvLvv 777 (794)
.+... +..|. ..+.|.+.+++ +||+++|+++.. .|.+.- |...+-+... ++++||||
T Consensus 81 ~~~~~-v~~g~-~~~~I~~~a~~--~dliV~G~~~~~---------~~~~~~--Gs~~~~vl~~---~~~pVlvv 137 (138)
T 3idf_A 81 NPFVV-IKEGE-PVEMVLEEAKD--YNLLIIGSSENS---------FLNKIF--ASHQDDFIQK---APIPVLIV 137 (138)
T ss_dssp CCEEE-EEESC-HHHHHHHHHTT--CSEEEEECCTTS---------TTSSCC--CCTTCHHHHH---CSSCEEEE
T ss_pred CeEEE-EecCC-hHHHHHHHHhc--CCEEEEeCCCcc---------hHHHHh--CcHHHHHHhc---CCCCEEEe
Confidence 33222 23342 34444444445 999999997532 222222 7777777766 66789987
No 21
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=98.25 E-value=3.1e-06 Score=80.61 Aligned_cols=128 Identities=13% Similarity=0.094 Sum_probs=83.6
Q ss_pred ceEEEEEecC-CccHHHHHHHHHHHhcCCCeEEEEEEeeccCCCCCchhhhhhHHHHHHHHHhhcCC-CCceEEEEEEec
Q 003798 633 RHHFVVLFLG-GADAREALAYADRMVGNLDVSLTVIRFLSFNHEGDDEMEKKLDDGLVTWFWVKNES-NERVRYREVVVR 710 (794)
Q Consensus 633 ~~~I~v~f~G-G~dDreAL~~A~rma~~~~v~ltvl~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~-~~~v~y~e~~v~ 710 (794)
.++|++++.| .++++.|+++|.++|+..+.+++++++.+..... .+...+..++.++++.+.... ...+.. +..+.
T Consensus 24 ~~~ILv~vD~~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~g~~~~~-~~~v~ 101 (155)
T 3dlo_A 24 YMPIVVAVDKKSDRAERVLRFAAEEARLRGVPVYVVHSLPGGGRT-KDEDIIEAKETLSWAVSIIRKEGAEGEE-HLLVR 101 (155)
T ss_dssp CCCEEEECCSSSHHHHHHHHHHHHHHHHHTCCEEEEEEECCSTTS-CHHHHHHHHHHHHHHHHHHHHTTCCEEE-EEEES
T ss_pred cCeEEEEECCCCHHHHHHHHHHHHHHHhcCCEEEEEEEEcCCCcc-cHHHHHHHHHHHHHHHHHHHhcCCCceE-EEEec
Confidence 4699999999 9999999999999999999999999998654322 222334445566665544321 223332 22343
Q ss_pred ChHHHHHHHHhhhc--cCcccEEEEecccCCCCccccccCCCCCCCccchhhhhhhccCCCCceeEEEEE
Q 003798 711 NGAETVASIQAVND--EAYCDLWIVGRYQGINGKLLEGLEAWSEDNELGVIGDYVASIDFGSTASVLVMQ 778 (794)
Q Consensus 711 ~~~~~~~~i~~~~~--~~~~DL~iVGr~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~~~SvLvvq 778 (794)
.|. ..+.|.+.++ + +||+|+|++++. ++.+ --+|...+-+... ++++||||+
T Consensus 102 ~G~-~~~~I~~~a~~~~--~DLIV~G~~g~~------~~~~----~~lGSv~~~vl~~---a~~PVLvVr 155 (155)
T 3dlo_A 102 GKE-PPDDIVDFADEVD--AIAIVIGIRKRS------PTGK----LIFGSVARDVILK---ANKPVICIK 155 (155)
T ss_dssp SSC-HHHHHHHHHHHTT--CSEEEEECCEEC------TTSC----EECCHHHHHHHHH---CSSCEEEEC
T ss_pred CCC-HHHHHHHHHHHcC--CCEEEECCCCCC------CCCC----EEeccHHHHHHHh---CCCCEEEeC
Confidence 443 3333333333 4 899999997632 1111 2378888888876 778999984
No 22
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=98.22 E-value=3.5e-06 Score=79.30 Aligned_cols=127 Identities=13% Similarity=0.131 Sum_probs=80.5
Q ss_pred ceEEEEEecCCccHHHHHHHHHHHhcCCCeEEEEEEeeccCCC--------------CCchhhhhhHHHHHHHHHhhcCC
Q 003798 633 RHHFVVLFLGGADAREALAYADRMVGNLDVSLTVIRFLSFNHE--------------GDDEMEKKLDDGLVTWFWVKNES 698 (794)
Q Consensus 633 ~~~I~v~f~GG~dDreAL~~A~rma~~~~v~ltvl~~~~~~~~--------------~~~~~~~~~d~~~l~~~~~~~~~ 698 (794)
.++|++++.|.++++.|+++|.++|++.+.+++++|+.++... +..+..++..++.++++..+...
T Consensus 6 ~~~ILv~vD~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 85 (150)
T 3tnj_A 6 YHHILLAVDFSSEDSQVVQKVRNLASQIGARLSLIHVLDNIPMPDTPYGTAIPLDTETTYDAMLDVEKQKLSQIGNTLGI 85 (150)
T ss_dssp CSEEEEECCCSTTHHHHHHHHHHHHHHHTCEEEEEEEEC--------CTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred cceEEEEeCCCHHHHHHHHHHHHHHhhcCCEEEEEEEEcCccccccccccccCcCHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4699999999999999999999999999999999999864211 01122234455667777665432
Q ss_pred CCceEEEEEEecChHHHHHHHHhhhc--cCcccEEEEecccCCCCccccccCCCCCCCccchhhhhhhccCCCCceeEEE
Q 003798 699 NERVRYREVVVRNGAETVASIQAVND--EAYCDLWIVGRYQGINGKLLEGLEAWSEDNELGVIGDYVASIDFGSTASVLV 776 (794)
Q Consensus 699 ~~~v~y~e~~v~~~~~~~~~i~~~~~--~~~~DL~iVGr~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~~~SvLv 776 (794)
. .+. ..+..|. ..+.|.+.++ + +||+++|++++. .|. --+|-..+-+... ++++|||
T Consensus 86 ~-~~~---~~~~~g~-~~~~I~~~a~~~~--~dliV~G~~~~~---------~~~--~~~Gs~~~~vl~~---~~~pVlv 144 (150)
T 3tnj_A 86 D-PAH---RWLVWGE-PREEIIRIAEQEN--VDLIVVGSHGRH---------GLA--LLLGSTANSVLHY---AKCDVLA 144 (150)
T ss_dssp C-GGG---EEEEESC-HHHHHHHHHHHTT--CSEEEEEEC-------------------CCCHHHHHHHH---CSSEEEE
T ss_pred C-cce---EEEecCC-HHHHHHHHHHHcC--CCEEEEecCCCC---------CcC--eEecchHHHHHHh---CCCCEEE
Confidence 2 121 1222332 2333333333 4 899999998642 122 3578888888877 6789999
Q ss_pred EEee
Q 003798 777 MQQQ 780 (794)
Q Consensus 777 vqq~ 780 (794)
|...
T Consensus 145 v~~~ 148 (150)
T 3tnj_A 145 VRLR 148 (150)
T ss_dssp EECC
T ss_pred EeCC
Confidence 9753
No 23
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=98.21 E-value=9.2e-07 Score=82.08 Aligned_cols=132 Identities=11% Similarity=0.058 Sum_probs=86.2
Q ss_pred eeEEEeccCCchHHHHHHHHhhC-CCCCCCceEEEEEEeeecCCCcccc-ccccccCCCCCC-CcchHHHHHHHHhhhhc
Q 003798 465 RLVVCVHEEESVAGLINLLEVSC-PTVDSPFSIYSLHLIELIGRGIPLL-VDYENEEHSPEY-TNDDAIHNALKLYSETR 541 (794)
Q Consensus 465 riLv~v~~~~~~~~li~l~~~~~-~~~~sp~~v~~lhLvel~~r~~~~~-~~~~~~~~~~~~-~~~~~i~~af~~~~~~~ 541 (794)
|||+|++..++....++.+..++ ...+ ..++++|+++......... ...+. ..... ...++.++.+.+..+.
T Consensus 3 ~ILv~~D~s~~s~~al~~a~~la~~~~~--a~l~ll~v~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~- 77 (138)
T 3idf_A 3 KLLFAIDDTEACERAAQYILDMFGKDAD--CTLTLIHVKPEFMLYGEAVLAAYDE--IEMKEEEKAKLLTQKFSTFFTE- 77 (138)
T ss_dssp EEEEECCSSHHHHHHHHHHHHHHTTCTT--EEEEEEEEECCCCCCHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHT-
T ss_pred eEEEEeCCCHHHHHHHHHHHHHhccCCC--CEEEEEEEecCCCcccccccCcHHH--HHHHHHHHHHHHHHHHHHHHHH-
Confidence 79999999999999999998887 4443 7899999988543211100 00000 00001 2233444444433332
Q ss_pred CceEEEEeEEeccCCChhHHHHHHHHhcCCcEEEecCCCCCCCCCCCccccccchhHHHHHhhccCCCceEEE
Q 003798 542 GELKFNAFTALAPMRSMYQNICELALDNKATLIILPFHKEYPNNLEGTQILRRGVQSVNIKVLSHAPCSVGVL 614 (794)
Q Consensus 542 ~~v~v~~~~~vs~~~~m~~dI~~~A~~~~a~lIilp~h~~~~~d~~g~~~~~~~~~~~n~~vl~~ApCsVgIl 614 (794)
.+++++..... .+..+.|++.|+ ++|+|+||.|++.... + .++++.++|++++||||-|.
T Consensus 78 ~g~~~~~~v~~---g~~~~~I~~~a~--~~dliV~G~~~~~~~~--~------~~Gs~~~~vl~~~~~pVlvv 137 (138)
T 3idf_A 78 KGINPFVVIKE---GEPVEMVLEEAK--DYNLLIIGSSENSFLN--K------IFASHQDDFIQKAPIPVLIV 137 (138)
T ss_dssp TTCCCEEEEEE---SCHHHHHHHHHT--TCSEEEEECCTTSTTS--S------CCCCTTCHHHHHCSSCEEEE
T ss_pred CCCCeEEEEec---CChHHHHHHHHh--cCCEEEEeCCCcchHH--H------HhCcHHHHHHhcCCCCEEEe
Confidence 45666655554 478999999999 9999999999663222 1 13677899999999999764
No 24
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=98.20 E-value=4.2e-06 Score=79.46 Aligned_cols=128 Identities=19% Similarity=0.238 Sum_probs=82.1
Q ss_pred ceEEEEEec--CCccHHHHHHHHHHHhcCCCeEEEEEEeeccCCCCC--------chhhhhhHHHHHHHHHhhcCC--CC
Q 003798 633 RHHFVVLFL--GGADAREALAYADRMVGNLDVSLTVIRFLSFNHEGD--------DEMEKKLDDGLVTWFWVKNES--NE 700 (794)
Q Consensus 633 ~~~I~v~f~--GG~dDreAL~~A~rma~~~~v~ltvl~~~~~~~~~~--------~~~~~~~d~~~l~~~~~~~~~--~~ 700 (794)
.++|++++. |.++.+.|+++|.++|+..+.+++++|+.+...... .+..++..++.++++.+.... -.
T Consensus 15 ~~~ILv~vD~~~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~ 94 (156)
T 3fg9_A 15 YRRILLTVDEDDNTSSERAFRYATTLAHDYDVPLGICSVLESEDINIFDSLTPSKIQAKRKHVEDVVAEYVQLAEQRGVN 94 (156)
T ss_dssp CC-EEEECCSCCCHHHHHHHHHHHHHHHHHTCCEEEEEEECCCCTTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred CceEEEEECCCCCHHHHHHHHHHHHHHHhcCCEEEEEEEEeCCCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 579999999 999999999999999999999999999986532110 011223445566666544321 11
Q ss_pred ceEEEEEEecChHHHHHHHHh-h-hccCcccEEEEecccCCCCccccccCCCCCCCccchhhhhhhccCCCCceeEEEEE
Q 003798 701 RVRYREVVVRNGAETVASIQA-V-NDEAYCDLWIVGRYQGINGKLLEGLEAWSEDNELGVIGDYVASIDFGSTASVLVMQ 778 (794)
Q Consensus 701 ~v~y~e~~v~~~~~~~~~i~~-~-~~~~~~DL~iVGr~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~~~SvLvvq 778 (794)
.+. ..+..+|......++. . +.+ +||+++|++++. .+. . -+|...+-+... ++++||||.
T Consensus 95 ~~~--~~v~~~g~~~~~I~~~~a~~~~--~DlIV~G~~g~~---------~~~-~-~~Gs~~~~vl~~---a~~PVlvV~ 156 (156)
T 3fg9_A 95 QVE--PLVYEGGDVDDVILEQVIPEFK--PDLLVTGADTEF---------PHS-K-IAGAIGPRLARK---APISVIVVR 156 (156)
T ss_dssp SEE--EEEEECSCHHHHHHHTHHHHHC--CSEEEEETTCCC---------TTS-S-SCSCHHHHHHHH---CSSEEEEEC
T ss_pred ceE--EEEEeCCCHHHHHHHHHHHhcC--CCEEEECCCCCC---------ccc-e-eecchHHHHHHh---CCCCEEEeC
Confidence 232 2233324323333333 2 234 899999998642 232 2 489888888877 778999983
No 25
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=98.10 E-value=1.4e-05 Score=76.87 Aligned_cols=132 Identities=13% Similarity=0.008 Sum_probs=83.3
Q ss_pred ceEEEEEecCCccHHHHHHHHHHHhcCCCeEEEEEEeeccCCC----------------CC-c--hhhhhhHHHHHHHHH
Q 003798 633 RHHFVVLFLGGADAREALAYADRMVGNLDVSLTVIRFLSFNHE----------------GD-D--EMEKKLDDGLVTWFW 693 (794)
Q Consensus 633 ~~~I~v~f~GG~dDreAL~~A~rma~~~~v~ltvl~~~~~~~~----------------~~-~--~~~~~~d~~~l~~~~ 693 (794)
.++|++++.|.++++.|+++|.++|+..+.+|+++|+.++... .. + +..++..++.++++.
T Consensus 5 ~~~ILv~vD~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 84 (170)
T 2dum_A 5 FRKVLFPTDFSEGAYRAVEVFEKRNKMEVGEVILLHVIDEGTLEELMDGYSFFYDNAEIELKDIKEKLKEEASRKLQEKA 84 (170)
T ss_dssp CSEEEEECCSSHHHHHHHHHHHHHCCSCCSEEEEEEEEETTGGGCCC------------CCTTSHHHHHHHHHHHHHHHH
T ss_pred cceEEEEecCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCccccccccccccccccccccHHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999999999999999999999999999854210 00 0 111233445566665
Q ss_pred hhcCC-CCceEEEEEEecChHHHHHHHHhhhc--cCcccEEEEecccCCCCccccccCCCCCCCccchhhhhhhccCCCC
Q 003798 694 VKNES-NERVRYREVVVRNGAETVASIQAVND--EAYCDLWIVGRYQGINGKLLEGLEAWSEDNELGVIGDYVASIDFGS 770 (794)
Q Consensus 694 ~~~~~-~~~v~y~e~~v~~~~~~~~~i~~~~~--~~~~DL~iVGr~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~ 770 (794)
..... .-.+.+ +..+..| +..+.|.+.++ + +||+|+|++++. ++. .--+|-..+-+... +
T Consensus 85 ~~~~~~g~~~~~-~~~~~~g-~~~~~I~~~a~~~~--~DlIV~G~~g~~------~~~----~~~~Gsv~~~vl~~---~ 147 (170)
T 2dum_A 85 EEVKRAFRAKNV-RTIIRFG-IPWDEIVKVAEEEN--VSLIILPSRGKL------SLS----HEFLGSTVMRVLRK---T 147 (170)
T ss_dssp HHHHHHTTCSEE-EEEEEEE-CHHHHHHHHHHHTT--CSEEEEESCCCC------C------TTCCCHHHHHHHHH---C
T ss_pred HHHHHcCCceee-eeEEecC-ChHHHHHHHHHHcC--CCEEEECCCCCC------ccc----cceechHHHHHHHh---C
Confidence 44211 123332 1122233 23333333333 4 899999998632 111 22478888888877 6
Q ss_pred ceeEEEEEeec
Q 003798 771 TASVLVMQQQV 781 (794)
Q Consensus 771 ~~SvLvvqq~~ 781 (794)
+++||||....
T Consensus 148 ~~PVlvv~~~~ 158 (170)
T 2dum_A 148 KKPVLIIKEVD 158 (170)
T ss_dssp SSCEEEECCCC
T ss_pred CCCEEEEccCC
Confidence 78999997654
No 26
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=98.10 E-value=9.8e-06 Score=75.77 Aligned_cols=128 Identities=19% Similarity=0.208 Sum_probs=79.5
Q ss_pred eEEEEEecCCccHHHHHHHHHHHhcCCCeEEEEEEeeccCC----------CC----CchhhhhhHHHHHHHHHhhcCC-
Q 003798 634 HHFVVLFLGGADAREALAYADRMVGNLDVSLTVIRFLSFNH----------EG----DDEMEKKLDDGLVTWFWVKNES- 698 (794)
Q Consensus 634 ~~I~v~f~GG~dDreAL~~A~rma~~~~v~ltvl~~~~~~~----------~~----~~~~~~~~d~~~l~~~~~~~~~- 698 (794)
++|++++.|.++++.|+++|.++|++.+.+++++|+.+... .. ..+..++..++.++++......
T Consensus 3 ~~ILv~vD~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 82 (147)
T 3hgm_A 3 NRIMVPVDGSKGAVKALEKGVGLQQLTGAELYILCVFKHHSLLEASLSMARPEQLDIPDDALKDYATEIAVQAKTRATEL 82 (147)
T ss_dssp SEEEEECCSBHHHHHHHHHHHHHHHHHCCEEEEEEEECCHHHHHHTBSSCCCGGGCCCTTHHHHHHHHHHHHHHHHHHHT
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCcccccccccccChhhhhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 59999999999999999999999999999999999986421 00 0122234445566666544321
Q ss_pred CCceEEEEEEecChHHHHHHHHhhhc--cCcccEEEEecccCCCCccccccCCCCCCCccchhhhhhhccCCCCceeEEE
Q 003798 699 NERVRYREVVVRNGAETVASIQAVND--EAYCDLWIVGRYQGINGKLLEGLEAWSEDNELGVIGDYVASIDFGSTASVLV 776 (794)
Q Consensus 699 ~~~v~y~e~~v~~~~~~~~~i~~~~~--~~~~DL~iVGr~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~~~SvLv 776 (794)
+-.+...+..+..|. ..+.|.+.++ + +||+++|++++. + |. .--+|-..+-+... ++++|||
T Consensus 83 g~~~~~~~~~~~~g~-~~~~I~~~a~~~~--~dliV~G~~~~~------~---~~-~~~~Gs~~~~vl~~---~~~pVlv 146 (147)
T 3hgm_A 83 GVPADKVRAFVKGGR-PSRTIVRFARKRE--CDLVVIGAQGTN------G---DK-SLLLGSVAQRVAGS---AHCPVLV 146 (147)
T ss_dssp TCCGGGEEEEEEESC-HHHHHHHHHHHTT--CSEEEECSSCTT------C---CS-CCCCCHHHHHHHHH---CSSCEEE
T ss_pred CCCccceEEEEecCC-HHHHHHHHHHHhC--CCEEEEeCCCCc------c---cc-ceeeccHHHHHHhh---CCCCEEE
Confidence 111200012222332 3333333333 4 899999998632 1 11 22478888888876 6778988
Q ss_pred E
Q 003798 777 M 777 (794)
Q Consensus 777 v 777 (794)
|
T Consensus 147 V 147 (147)
T 3hgm_A 147 V 147 (147)
T ss_dssp C
T ss_pred C
Confidence 6
No 27
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=98.08 E-value=2.2e-05 Score=73.04 Aligned_cols=127 Identities=14% Similarity=0.101 Sum_probs=77.7
Q ss_pred eEEEEEecCCcc--HHHHHHHHHHHhcCCCeEEEEEEeeccCCCC---------C---chhhhhhHHHHHHHHHhhcCCC
Q 003798 634 HHFVVLFLGGAD--AREALAYADRMVGNLDVSLTVIRFLSFNHEG---------D---DEMEKKLDDGLVTWFWVKNESN 699 (794)
Q Consensus 634 ~~I~v~f~GG~d--DreAL~~A~rma~~~~v~ltvl~~~~~~~~~---------~---~~~~~~~d~~~l~~~~~~~~~~ 699 (794)
++|++++.|.++ ++.|+++|.++|+..+.+++++|+.+..... + .+...+...+.++++..+....
T Consensus 2 k~ILv~vD~s~~~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 81 (143)
T 3fdx_A 2 NAILVPIDISDKEFTERIISHVESEARIDDAEVHFLTVIPSLPYYASLGMAYTAELPGMDELREGSETQLKEIAKKFSIP 81 (143)
T ss_dssp CEEEEECCTTCSSCCTTHHHHHHHHHHHHTCEEEEEEEECC----------------CHHHHHHHHHHHHHHHHTTSCCC
T ss_pred CEEEEEecCChHhhHHHHHHHHHHHHHhcCCeEEEEEEecCCcccccccccccchhhhHHHHHHHHHHHHHHHHHHcCCC
Confidence 489999999999 9999999999999999999999998652210 0 0111122223344444333211
Q ss_pred -CceEEEEEEecChHHHHHHHHhhhccCcccEEEEecccCCCCccccccCCCCCCCccchhhhhhhccCCCCceeEEEEE
Q 003798 700 -ERVRYREVVVRNGAETVASIQAVNDEAYCDLWIVGRYQGINGKLLEGLEAWSEDNELGVIGDYVASIDFGSTASVLVMQ 778 (794)
Q Consensus 700 -~~v~y~e~~v~~~~~~~~~i~~~~~~~~~DL~iVGr~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~~~SvLvvq 778 (794)
.++.+ . +..| +..+.|.+.+++..+||+++|+++ . |+.+ --+|-..+-+... ++++||||.
T Consensus 82 ~~~v~~--~-~~~g-~~~~~I~~~a~~~~~dliV~G~~~-~------~~~~----~~~Gs~~~~v~~~---~~~pVlvv~ 143 (143)
T 3fdx_A 82 EDRMHF--H-VAEG-SPKDKILALAKSLPADLVIIASHR-P------DITT----YLLGSNAAAVVRH---AECSVLVVR 143 (143)
T ss_dssp GGGEEE--E-EEES-CHHHHHHHHHHHTTCSEEEEESSC-T------TCCS----CSSCHHHHHHHHH---CSSEEEEEC
T ss_pred CCceEE--E-EEec-ChHHHHHHHHHHhCCCEEEEeCCC-C------CCee----eeeccHHHHHHHh---CCCCEEEeC
Confidence 12322 2 2233 233444334331118999999983 2 1222 2478888888877 778999983
No 28
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=98.05 E-value=1.8e-05 Score=73.23 Aligned_cols=125 Identities=16% Similarity=0.161 Sum_probs=79.8
Q ss_pred eEEEEEecCCccHHHHHHHHHHHhcCCCeEEEEEEeeccCCC--C---Cc---hhhhhhHHHHHHHHHhhcCCCCceEEE
Q 003798 634 HHFVVLFLGGADAREALAYADRMVGNLDVSLTVIRFLSFNHE--G---DD---EMEKKLDDGLVTWFWVKNESNERVRYR 705 (794)
Q Consensus 634 ~~I~v~f~GG~dDreAL~~A~rma~~~~v~ltvl~~~~~~~~--~---~~---~~~~~~d~~~l~~~~~~~~~~~~v~y~ 705 (794)
++|++++.|.++++.|+++|.++|+..+.+++++|+.++... . .+ +..++..++.++++..+. +-+.+.+.
T Consensus 3 ~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~~~~ 81 (137)
T 2z08_A 3 KTILLAYDGSEHARRAAEVAKAEAEAHGARLIVVHAYEPVPDYLGEPFFEEALRRRLERAEGVLEEARALT-GVPKEDAL 81 (137)
T ss_dssp SEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEEECC--------------CHHHHHHHHHHHHHHHHH-CCCGGGEE
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhcCCEEEEEEEecCCCccccccchHHHHHHHHHHHHHHHHHHHHHc-CCCccEEE
Confidence 599999999999999999999999999999999999864210 0 00 111234455676666542 11023222
Q ss_pred EEEecChHHHHHHHHhhhc--cCcccEEEEecccCCCCccccccCCCCCCCccchhhhhhhccCCCCceeEEEEE
Q 003798 706 EVVVRNGAETVASIQAVND--EAYCDLWIVGRYQGINGKLLEGLEAWSEDNELGVIGDYVASIDFGSTASVLVMQ 778 (794)
Q Consensus 706 e~~v~~~~~~~~~i~~~~~--~~~~DL~iVGr~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~~~SvLvvq 778 (794)
+. .| +..+.|.+.++ + +||+++|++++. ++. .--+|-..+-+... ++++||||.
T Consensus 82 --~~-~g-~~~~~I~~~a~~~~--~dliV~G~~~~~------~~~----~~~~Gs~~~~vl~~---~~~pVlvv~ 137 (137)
T 2z08_A 82 --LL-EG-VPAEAILQAARAEK--ADLIVMGTRGLG------ALG----SLFLGSQSQRVVAE---APCPVLLVR 137 (137)
T ss_dssp --EE-ES-SHHHHHHHHHHHTT--CSEEEEESSCTT------CCS----CSSSCHHHHHHHHH---CSSCEEEEC
T ss_pred --EE-ec-CHHHHHHHHHHHcC--CCEEEECCCCCc------hhh----hhhhccHHHHHHhc---CCCCEEEeC
Confidence 22 33 23333333333 4 899999998632 111 12378888888877 678999983
No 29
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=98.03 E-value=4.8e-05 Score=72.44 Aligned_cols=130 Identities=15% Similarity=0.114 Sum_probs=82.9
Q ss_pred ceEEEEEecCCccHHHHHHHHHHHhcCCCeEEEEEEeeccC-----C---CC-------Cc------h---hhhhhHHHH
Q 003798 633 RHHFVVLFLGGADAREALAYADRMVGNLDVSLTVIRFLSFN-----H---EG-------DD------E---MEKKLDDGL 688 (794)
Q Consensus 633 ~~~I~v~f~GG~dDreAL~~A~rma~~~~v~ltvl~~~~~~-----~---~~-------~~------~---~~~~~d~~~ 688 (794)
.++|++++.|.++++.|+++|.++|+..+.+++++|+.++. . .. .. + ..++..++.
T Consensus 5 ~~~ILv~vD~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (162)
T 1mjh_A 5 YKKILYPTDFSETAEIALKHVKAFKTLKAEEVILLHVIDEREIKKRDIFSLLLGVAGLNKSVEEFENELKNKLTEEAKNK 84 (162)
T ss_dssp CCEEEEECCSCHHHHHHHHHHHHTCCSSCCEEEEEEEEEGGGTC-----------------CHHHHHHHHHHHHHHHHHH
T ss_pred cceEEEEeCCCHHHHHHHHHHHHHHhhcCCeEEEEEEecCccccccccccccccccccccchhhhHHHHHHHHHHHHHHH
Confidence 46999999999999999999999999999999999998643 1 10 11 0 011233455
Q ss_pred HHHHHhhcCCCCceEEEEEEecChHHHHHHHHhhhc--cCcccEEEEecccCCCCccccccCCCCCCCccchhhhhhhcc
Q 003798 689 VTWFWVKNESNERVRYREVVVRNGAETVASIQAVND--EAYCDLWIVGRYQGINGKLLEGLEAWSEDNELGVIGDYVASI 766 (794)
Q Consensus 689 l~~~~~~~~~~~~v~y~e~~v~~~~~~~~~i~~~~~--~~~~DL~iVGr~~~~~~~~~~gl~~w~e~~eLG~igd~las~ 766 (794)
++++...... ..+.+...+. .| +..+.|.+.++ + +||+|+|++++. ++.+| -+|-+.+-+...
T Consensus 85 l~~~~~~~~~-~g~~~~~~v~-~G-~~~~~I~~~a~~~~--~dlIV~G~~g~~------~~~~~----~~GSv~~~vl~~ 149 (162)
T 1mjh_A 85 MENIKKELED-VGFKVKDIIV-VG-IPHEEIVKIAEDEG--VDIIIMGSHGKT------NLKEI----LLGSVTENVIKK 149 (162)
T ss_dssp HHHHHHHHHH-TTCEEEEEEE-EE-CHHHHHHHHHHHTT--CSEEEEESCCSS------CCTTC----SSCHHHHHHHHH
T ss_pred HHHHHHHHHH-cCCceEEEEc-CC-CHHHHHHHHHHHcC--CCEEEEcCCCCC------Cccce----EecchHHHHHHh
Confidence 6666554321 1233322222 34 23333433333 4 899999998642 22222 389888888877
Q ss_pred CCCCceeEEEEEee
Q 003798 767 DFGSTASVLVMQQQ 780 (794)
Q Consensus 767 d~~~~~SvLvvqq~ 780 (794)
++++||||...
T Consensus 150 ---~~~pVlvv~~~ 160 (162)
T 1mjh_A 150 ---SNKPVLVVKRK 160 (162)
T ss_dssp ---CCSCEEEECCC
T ss_pred ---CCCCEEEEeCC
Confidence 67899999753
No 30
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=97.98 E-value=1e-05 Score=75.11 Aligned_cols=126 Identities=15% Similarity=0.081 Sum_probs=77.5
Q ss_pred eEEEEEecCCccHHHHHHHHHHHhcCCCeEEEEEEeecc-CC-CCC-c--------hhhhhhHHHHHHHHHhhcCCCCce
Q 003798 634 HHFVVLFLGGADAREALAYADRMVGNLDVSLTVIRFLSF-NH-EGD-D--------EMEKKLDDGLVTWFWVKNESNERV 702 (794)
Q Consensus 634 ~~I~v~f~GG~dDreAL~~A~rma~~~~v~ltvl~~~~~-~~-~~~-~--------~~~~~~d~~~l~~~~~~~~~~~~v 702 (794)
++|++++.|.++++.|+++|.++|+..+.+++++|+.++ .. ... . +..++..++.++++..+.... +
T Consensus 3 ~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~ 80 (141)
T 1jmv_A 3 KHILVAVDLSEESPILLKKAVGIAKRHDAKLSIIHVDVNFSDLYTGLIDVNMSSMQDRISTETQKALLDLAESVDYP--I 80 (141)
T ss_dssp SEEEEEECCSTTHHHHHHHHHHHHHHHTCEEEEEEEEECCGGGCCCCEEHHHHHHTTCCCCHHHHHHHHHHHHSSSC--C
T ss_pred ceEEEEecCchhhHHHHHHHHHHHHhcCCEEEEEEEecCchhhhccccccchHHHHHHHHHHHHHHHHHHHHHcCCC--c
Confidence 599999999999999999999999998999999999843 11 100 0 001133455666666554221 1
Q ss_pred EEEEEEecChHHHHHHHHhhhccCcccEEEEecccCCCCccccccCCCCCCCccchhhhhhhccCCCCceeEEEEEee
Q 003798 703 RYREVVVRNGAETVASIQAVNDEAYCDLWIVGRYQGINGKLLEGLEAWSEDNELGVIGDYVASIDFGSTASVLVMQQQ 780 (794)
Q Consensus 703 ~y~e~~v~~~~~~~~~i~~~~~~~~~DL~iVGr~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~~~SvLvvqq~ 780 (794)
.+..+..|......++...+.+ +||+++|++ .. . |. .+|-..+-+... ++++||||...
T Consensus 81 --~~~~~~~g~~~~~I~~~a~~~~-~dliV~G~~-~~--~-------~~---~lgs~~~~vl~~---~~~pVlvv~~~ 139 (141)
T 1jmv_A 81 --SEKLSGSGDLGQVLSDAIEQYD-VDLLVTGHH-QD--F-------WS---KLMSSTRQVMNT---IKIDMLVVPLR 139 (141)
T ss_dssp --CCEEEEEECHHHHHHHHHHHTT-CCEEEEEEC-CC--C-------HH---HHHHHHHHHHTT---CCSEEEEEECC
T ss_pred --eEEEEecCCHHHHHHHHHHhcC-CCEEEEeCC-Cc--h-------hh---hhcchHHHHHhc---CCCCEEEeeCC
Confidence 1112222322222222222222 899999987 32 1 11 257777777765 67899999753
No 31
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=97.92 E-value=4e-05 Score=73.50 Aligned_cols=129 Identities=17% Similarity=0.188 Sum_probs=80.2
Q ss_pred ceEEEEEecCCccHHHHHHHHHHHhcCCCeEEEEE--EeeccCCC--C----C---chhhhhhHHHHHHHHHhhcCCCCc
Q 003798 633 RHHFVVLFLGGADAREALAYADRMVGNLDVSLTVI--RFLSFNHE--G----D---DEMEKKLDDGLVTWFWVKNESNER 701 (794)
Q Consensus 633 ~~~I~v~f~GG~dDreAL~~A~rma~~~~v~ltvl--~~~~~~~~--~----~---~~~~~~~d~~~l~~~~~~~~~~~~ 701 (794)
.++|++++.|.+.++.|+++|.++|+ .+.+++++ ++.+.... . . .+..++..++.++++.+..... .
T Consensus 17 ~~~ILv~vD~s~~s~~al~~A~~lA~-~~a~l~ll~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-g 94 (163)
T 1tq8_A 17 YKTVVVGTDGSDSSMRAVDRAAQIAG-ADAKLIIASAYLPQHEDARAADILKDESYKVTGTAPIYEILHDAKERAHNA-G 94 (163)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHHHT-TTSEEEEEEECCC--------------------CCTHHHHHHHHHHHHHTT-T
T ss_pred CCEEEEEcCCCHHHHHHHHHHHHHhC-CCCEEEEEEeeeccCcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHc-C
Confidence 56999999999999999999999999 99999999 88753211 0 0 0112234455666665543221 2
Q ss_pred eE-EEEEEecChHHHHHHHHhhh--ccCcccEEEEecccCCCCccccccCCCCCCCccchhhhhhhccCCCCceeEEEEE
Q 003798 702 VR-YREVVVRNGAETVASIQAVN--DEAYCDLWIVGRYQGINGKLLEGLEAWSEDNELGVIGDYVASIDFGSTASVLVMQ 778 (794)
Q Consensus 702 v~-y~e~~v~~~~~~~~~i~~~~--~~~~~DL~iVGr~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~~~SvLvvq 778 (794)
+. +...+. .|. ..+.|.+.+ .+ +||+|+|++++. ++.+| -+|-+.+-+... ++++||||.
T Consensus 95 v~~v~~~v~-~G~-~~~~I~~~a~~~~--~DLIV~G~~g~~------~~~~~----~lGSva~~vl~~---a~~PVlvV~ 157 (163)
T 1tq8_A 95 AKNVEERPI-VGA-PVDALVNLADEEK--ADLLVVGNVGLS------TIAGR----LLGSVPANVSRR---AKVDVLIVH 157 (163)
T ss_dssp CCEEEEEEE-CSS-HHHHHHHHHHHTT--CSEEEEECCCCC------SHHHH----HTBBHHHHHHHH---TTCEEEEEC
T ss_pred CCeEEEEEe-cCC-HHHHHHHHHHhcC--CCEEEECCCCCC------cccce----eeccHHHHHHHh---CCCCEEEEe
Confidence 22 222333 343 333333322 34 899999998642 11121 378888888877 678999997
Q ss_pred ee
Q 003798 779 QQ 780 (794)
Q Consensus 779 q~ 780 (794)
..
T Consensus 158 ~~ 159 (163)
T 1tq8_A 158 TT 159 (163)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 32
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=97.81 E-value=4.9e-05 Score=70.27 Aligned_cols=101 Identities=18% Similarity=0.147 Sum_probs=62.9
Q ss_pred ceEEEEEecCCccHHHHHHHHHHHhcCCCeEEEEEEee-cc---C-------CCCCch---hhhhhHHHHHHHHHhh--c
Q 003798 633 RHHFVVLFLGGADAREALAYADRMVGNLDVSLTVIRFL-SF---N-------HEGDDE---MEKKLDDGLVTWFWVK--N 696 (794)
Q Consensus 633 ~~~I~v~f~GG~dDreAL~~A~rma~~~~v~ltvl~~~-~~---~-------~~~~~~---~~~~~d~~~l~~~~~~--~ 696 (794)
.++|++++.|.++++.|+++|.++|+..+.+++++|+. +. . ...+++ ..++..++.++++ .+ .
T Consensus 4 ~~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~ 82 (138)
T 1q77_A 4 MKVLLVLTDAYSDCEKAITYAVNFSEKLGAELDILAVLEDVYNLERANVTFGLPFPPEIKEESKKRIERRLREV-WEKLT 82 (138)
T ss_dssp CEEEEEEESTTCCCHHHHHHHHHHHTTTCCEEEEEEECHHHHHHHHHHHHHCCCCCTHHHHHHHHHHHHHHHHH-HHHHH
T ss_pred ccEEEEEccCCHhHHHHHHHHHHHHHHcCCeEEEEEEecccccccccccccCCCCChHHHHHHHHHHHHHHHHH-HHHhh
Confidence 46999999999999999999999999999999999998 52 0 110111 1123344566666 44 1
Q ss_pred CCCCceEEEEEEecChHHHHHHHHhhhccCcccEEEEecccC
Q 003798 697 ESNERVRYREVVVRNGAETVASIQAVNDEAYCDLWIVGRYQG 738 (794)
Q Consensus 697 ~~~~~v~y~e~~v~~~~~~~~~i~~~~~~~~~DL~iVGr~~~ 738 (794)
...+++.+. +..|. ..+.|.+.+++..+||+++|+++.
T Consensus 83 ~~~~~~~~~---~~~g~-~~~~I~~~a~~~~~dliV~G~~g~ 120 (138)
T 1q77_A 83 GSTEIPGVE---YRIGP-LSEEVKKFVEGKGYELVVWACYPS 120 (138)
T ss_dssp SCCCCCCEE---EECSC-HHHHHHHHHTTSCCSEEEECSCCG
T ss_pred ccCCcceEE---EEcCC-HHHHHHHHHHhcCCCEEEEeCCCC
Confidence 111134332 33343 334444443311189999998753
No 33
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=97.77 E-value=8.7e-05 Score=68.55 Aligned_cols=129 Identities=7% Similarity=-0.050 Sum_probs=78.3
Q ss_pred ceeEEEeccCCchHHHHHHHHhhCCCCCCCceEEEEEEe-ee-cCCCc-cc-cccccccCCCCCCCcchHHHHHHHHhhh
Q 003798 464 LRLVVCVHEEESVAGLINLLEVSCPTVDSPFSIYSLHLI-EL-IGRGI-PL-LVDYENEEHSPEYTNDDAIHNALKLYSE 539 (794)
Q Consensus 464 lriLv~v~~~~~~~~li~l~~~~~~~~~sp~~v~~lhLv-el-~~r~~-~~-~~~~~~~~~~~~~~~~~~i~~af~~~~~ 539 (794)
.|||+|++..++....++.+..++... ...++++|++ +. +.... .. -.+.............++.++.++.++.
T Consensus 5 ~~ILv~~D~s~~s~~al~~a~~la~~~--~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 82 (138)
T 1q77_A 5 KVLLVLTDAYSDCEKAITYAVNFSEKL--GAELDILAVLEDVYNLERANVTFGLPFPPEIKEESKKRIERRLREVWEKLT 82 (138)
T ss_dssp EEEEEEESTTCCCHHHHHHHHHHHTTT--CCEEEEEEECHHHHHHHHHHHHHCCCCCTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEEccCCHhHHHHHHHHHHHHHHc--CCeEEEEEEecccccccccccccCCCCChHHHHHHHHHHHHHHHHHHHHhh
Confidence 489999999999999999887776543 3689999998 63 10000 00 0000000000000112233333222101
Q ss_pred hcCceEEEEeEEeccCCChhHHHHHHHHhcCCcEEEecCCCCCCCCCCCccccccchhHHHHHhhccCCCceEEE
Q 003798 540 TRGELKFNAFTALAPMRSMYQNICELALDNKATLIILPFHKEYPNNLEGTQILRRGVQSVNIKVLSHAPCSVGVL 614 (794)
Q Consensus 540 ~~~~v~v~~~~~vs~~~~m~~dI~~~A~~~~a~lIilp~h~~~~~d~~g~~~~~~~~~~~n~~vl~~ApCsVgIl 614 (794)
...+ +++.... ..+..+.|++.|+++++|+|+||.| |. ++.++|++++||+|-|.
T Consensus 83 ~~~~-~~~~~~~---~g~~~~~I~~~a~~~~~dliV~G~~--------g~--------sv~~~vl~~a~~PVlvv 137 (138)
T 1q77_A 83 GSTE-IPGVEYR---IGPLSEEVKKFVEGKGYELVVWACY--------PS--------AYLCKVIDGLNLASLIV 137 (138)
T ss_dssp SCCC-CCCEEEE---CSCHHHHHHHHHTTSCCSEEEECSC--------CG--------GGTHHHHHHSSSEEEEC
T ss_pred ccCC-cceEEEE---cCCHHHHHHHHHHhcCCCEEEEeCC--------CC--------chHHHHHHhCCCceEee
Confidence 1133 4444433 3588999999999999999999998 33 34789999999998663
No 34
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=97.66 E-value=4.3e-05 Score=81.47 Aligned_cols=146 Identities=12% Similarity=0.027 Sum_probs=86.0
Q ss_pred CceeEEEeccCCc-------hHHHHHHHHhhCCCCCCCceEEEEEEeeecCCCccccccccccCCCCCCCcchHHHHHHH
Q 003798 463 ELRLVVCVHEEES-------VAGLINLLEVSCPTVDSPFSIYSLHLIELIGRGIPLLVDYENEEHSPEYTNDDAIHNALK 535 (794)
Q Consensus 463 elriLv~v~~~~~-------~~~li~l~~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~~i~~af~ 535 (794)
..|||+|+...+. ....++.+..++........++++|+.+........-.+.... ........++..+.++
T Consensus 156 ~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~ 234 (319)
T 3olq_A 156 YGTIVVAANLSNEESYHDALNLKLIELTNDLSHRIQKDPDVHLLSAYPVAPINIAIELPDFDP-NLYNNALRGQHLIAMK 234 (319)
T ss_dssp TCEEEEECCCSCCSTHHHHHHHHHHHHHHHHHHHHCSSCCEEEEEEECCCSCSCCTTCTTCCH-HHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCcchhHHHHHHHHHHHHHHHHHhccCCCeEEEEEeecCcchhhhccCCcccH-HHHHHHHHHHHHHHHH
Confidence 4689999998874 3556666655443320025789999987543221100000000 0000011122334445
Q ss_pred HhhhhcCceEEEEeEEeccCCChhHHHHHHHHhcCCcEEEecCCCCCCCCCCCccccccc-hhHHHHHhhccCCCceEEE
Q 003798 536 LYSETRGELKFNAFTALAPMRSMYQNICELALDNKATLIILPFHKEYPNNLEGTQILRRG-VQSVNIKVLSHAPCSVGVL 614 (794)
Q Consensus 536 ~~~~~~~~v~v~~~~~vs~~~~m~~dI~~~A~~~~a~lIilp~h~~~~~d~~g~~~~~~~-~~~~n~~vl~~ApCsVgIl 614 (794)
.+.+..+...++....- .+..+.|++.|+++++|||+||.|++.+ ..+. ++++.++|++++||+|.|+
T Consensus 235 ~~~~~~~~~~~~~~v~~---g~~~~~I~~~a~~~~~dLiV~G~~g~~~--------~~~~~~Gsv~~~vl~~~~~pVLvv 303 (319)
T 3olq_A 235 ELRQKFSIPEEKTHVKE---GLPEQVIPQVCEELNAGIVVLGILGRTG--------LSAAFLGNTAEQLIDHIKCDLLAI 303 (319)
T ss_dssp HHHHHTTCCGGGEEEEE---SCHHHHHHHHHHHTTEEEEEEECCSCCS--------THHHHHHHHHHHHHTTCCSEEEEE
T ss_pred HHHHHhCCCcccEEEec---CCcHHHHHHHHHHhCCCEEEEeccCccC--------CccccccHHHHHHHhhCCCCEEEE
Confidence 55444221112222222 4779999999999999999999986532 1233 8999999999999999888
Q ss_pred ecCCCC
Q 003798 615 VDKGNF 620 (794)
Q Consensus 615 vdRg~~ 620 (794)
-.+|+.
T Consensus 304 ~~~~~~ 309 (319)
T 3olq_A 304 KPDGFT 309 (319)
T ss_dssp CCTTCC
T ss_pred CCCCCC
Confidence 666654
No 35
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=97.65 E-value=0.00015 Score=76.89 Aligned_cols=134 Identities=14% Similarity=0.147 Sum_probs=85.9
Q ss_pred ccceEEEEEecCCccHHHHHHHHHHHhcCCCeEEEEEEeeccCCCC------Cch---hhhhhHHHHHHHHHhhcCC---
Q 003798 631 MRRHHFVVLFLGGADAREALAYADRMVGNLDVSLTVIRFLSFNHEG------DDE---MEKKLDDGLVTWFWVKNES--- 698 (794)
Q Consensus 631 ~~~~~I~v~f~GG~dDreAL~~A~rma~~~~v~ltvl~~~~~~~~~------~~~---~~~~~d~~~l~~~~~~~~~--- 698 (794)
...++|++++.|.++++.|+++|.++|++.+.+++++|+.++.... ..+ ..++..++.++++++....
T Consensus 17 ~~~~~ILv~~D~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 96 (309)
T 3cis_A 17 NSSLGIIVGIDDSPAAQVAVRWAARDAELRKIPLTLVHAVSPEVATWLEVPLPPGVLRWQQDHGRHLIDDALKVVEQASL 96 (309)
T ss_dssp -CTTEEEEECCSSHHHHHHHHHHHHHHHHHTCCEEEEEECCCCCCCTTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred CCCCeEEEEECCCHHHHHHHHHHHHHHHhcCCcEEEEEEecCcccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3457999999999999999999999999989999999998632210 111 1122333445554433211
Q ss_pred -CCceEEEEEEecChHHHHHHHHhhhccCcccEEEEecccCCCCccccccCCCCCCCccchhhhhhhccCCCCceeEEEE
Q 003798 699 -NERVRYREVVVRNGAETVASIQAVNDEAYCDLWIVGRYQGINGKLLEGLEAWSEDNELGVIGDYVASIDFGSTASVLVM 777 (794)
Q Consensus 699 -~~~v~y~e~~v~~~~~~~~~i~~~~~~~~~DL~iVGr~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~~~SvLvv 777 (794)
...+.+..++. .| +..+.|.+.+++ +||+|+|+++.. + | +.--+|-..+-+... +++.||||
T Consensus 97 ~~~~~~~~~~~~-~g-~~~~~I~~~a~~--~DliV~G~~g~~------~---~-~~~~~Gs~~~~vl~~---~~~PVlvv 159 (309)
T 3cis_A 97 RAGPPTVHSEIV-PA-AAVPTLVDMSKD--AVLMVVGCLGSG------R---W-PGRLLGSVSSGLLRH---AHCPVVII 159 (309)
T ss_dssp SSCCSCEEEEEE-SS-CHHHHHHHHGGG--EEEEEEESSCTT------C---C-TTCCSCHHHHHHHHH---CSSCEEEE
T ss_pred cCCCceEEEEEe-cC-CHHHHHHHHhcC--CCEEEECCCCCc------c---c-cccccCcHHHHHHHh---CCCCEEEE
Confidence 11233333333 44 344555555556 999999997532 1 2 122478888888877 67899999
Q ss_pred Eeec
Q 003798 778 QQQV 781 (794)
Q Consensus 778 qq~~ 781 (794)
....
T Consensus 160 ~~~~ 163 (309)
T 3cis_A 160 HDED 163 (309)
T ss_dssp CTTC
T ss_pred cCCc
Confidence 8654
No 36
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=97.65 E-value=0.015 Score=62.20 Aligned_cols=110 Identities=10% Similarity=-0.012 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHhhccChhHHHhcCc---hhhHHHHHHHHHHHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHhhccH
Q 003798 108 VGIMAFMYFMFIAGIKMDFTLLKRCGR---KHVYIAVTGVIIPTATSAAVAFLTRKSMDPELAKVSSIGAITTSLAVTSF 184 (794)
Q Consensus 108 l~~lgl~~llF~~Gle~d~~~l~~~~~---~~~~ia~~~~~~p~~l~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~ 184 (794)
.....+.+.||..|++++.+++++..+ ......+..+++-=+++++++.++.. ++......++++++=+.++.
T Consensus 44 ~i~~~l~~~mf~~G~~l~~~~l~~~~~~~~~~~~~l~~~~vi~Pll~~~l~~~~~l----~~~~~~Glil~~~~P~~~~s 119 (332)
T 3zux_A 44 YIPWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQFAIMPATAWCLSKLLNL----PAEIAVGVILVGCCPGGTAS 119 (332)
T ss_dssp GHHHHHHHHHHHHHHHCCGGGGHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHTTC----CHHHHHHHHHHHHSCCCTHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCC----ChHHHHHHHHHhcCCchhHH
Confidence 445678899999999999999985443 33333334443333345555555422 11111122222222222333
Q ss_pred HHHHHHHHhcCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 003798 185 PVLNPILKDLNLLSSEMGRMAIVTAVIGDAIGINIVIAFEAAKQ 228 (794)
Q Consensus 185 ~vv~~iL~el~l~~s~~g~l~ls~a~v~D~~~~ill~v~~~~~~ 228 (794)
.+ ++.+ .+.+. .++.+...++.+++.+.+-+...+..
T Consensus 120 ~v----~t~~--a~Gd~-~la~~~~~~stll~~~~~Pl~~~l~~ 156 (332)
T 3zux_A 120 NV----MTYL--ARGNV-ALSVAVTSVSTLTSPLLTPAIFLMLA 156 (332)
T ss_dssp HH----HHHH--TTCCH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HH----HHHH--hCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 33 3332 22332 57777788888888887766655443
No 37
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=97.63 E-value=0.00048 Score=66.39 Aligned_cols=131 Identities=11% Similarity=0.160 Sum_probs=77.0
Q ss_pred ceEEEEEecCCc---------cHHHHHHHHHHHh-cC--CCeEEEEEEeeccCCC--C------Cch--------hhhhh
Q 003798 633 RHHFVVLFLGGA---------DAREALAYADRMV-GN--LDVSLTVIRFLSFNHE--G------DDE--------MEKKL 684 (794)
Q Consensus 633 ~~~I~v~f~GG~---------dDreAL~~A~rma-~~--~~v~ltvl~~~~~~~~--~------~~~--------~~~~~ 684 (794)
.++|++++.|.+ .++.|+++|.+++ +. .+.+|+++|+.+.... . ... ..++.
T Consensus 5 ~~~ILv~vD~s~~~~~~~~~~~s~~al~~a~~la~~~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (175)
T 2gm3_A 5 PTKVMVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSNTSDFKILLLHVQVVDEDGFDDVDSIYASPEDFRDMRQSNKAK 84 (175)
T ss_dssp CEEEEEECCBCSSSCTTCBCHHHHHHHHHHHHHTTTTCTTSEEEEEEEEEC----------CCCCSHHHHHHHTTSHHHH
T ss_pred ccEEEEEECCCcccccccccHHHHHHHHHHHHHhhcccCCCCEEEEEEEeecccccccccccccCCHHHHHHHHHHHHHH
Confidence 479999999999 9999999999987 44 5899999999753210 0 000 01122
Q ss_pred HHHHHHHHHhhcCCCCceEEEEEEecChHHHHHHHHhhhc--cCcccEEEEecccCCCCccccccCCCCCCCccchhhhh
Q 003798 685 DDGLVTWFWVKNESNERVRYREVVVRNGAETVASIQAVND--EAYCDLWIVGRYQGINGKLLEGLEAWSEDNELGVIGDY 762 (794)
Q Consensus 685 d~~~l~~~~~~~~~~~~v~y~e~~v~~~~~~~~~i~~~~~--~~~~DL~iVGr~~~~~~~~~~gl~~w~e~~eLG~igd~ 762 (794)
.++.++++...... ..+.+...+. .|. ....|.+.++ + +||+|+|+++.. ++.+| -+|-..+-
T Consensus 85 ~~~~l~~~~~~~~~-~g~~~~~~v~-~G~-~~~~I~~~a~~~~--~DLIVmG~~g~~------~~~~~----~~Gsva~~ 149 (175)
T 2gm3_A 85 GLHLLEFFVNKCHE-IGVGCEAWIK-TGD-PKDVICQEVKRVR--PDFLVVGSRGLG------RFQKV----FVGTVSAF 149 (175)
T ss_dssp HHHHHHHHHHHHHH-HTCEEEEEEE-ESC-HHHHHHHHHHHHC--CSEEEEEECCCC------------------CHHHH
T ss_pred HHHHHHHHHHHHHH-CCCceEEEEe-cCC-HHHHHHHHHHHhC--CCEEEEeCCCCC------hhhhh----hcCchHHH
Confidence 34566666544321 1233322333 332 2333333322 4 899999998532 12222 37888888
Q ss_pred hhccCCCCceeEEEEEeec
Q 003798 763 VASIDFGSTASVLVMQQQV 781 (794)
Q Consensus 763 las~d~~~~~SvLvvqq~~ 781 (794)
+... ++++||||....
T Consensus 150 vl~~---a~~pVlvv~~~~ 165 (175)
T 2gm3_A 150 CVKH---AECPVMTIKRNA 165 (175)
T ss_dssp HHHH---CSSCEEEEECCG
T ss_pred HHhC---CCCCEEEEcCCc
Confidence 8877 678999998654
No 38
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=97.63 E-value=0.00016 Score=76.14 Aligned_cols=119 Identities=12% Similarity=0.011 Sum_probs=84.3
Q ss_pred CCceeEEEeccCCchHHHHHHHHhhCCCCCCCceEEEEEEeeecCCCccccccccccCCCCCCCcchHHHHHHHHhhhhc
Q 003798 462 TELRLVVCVHEEESVAGLINLLEVSCPTVDSPFSIYSLHLIELIGRGIPLLVDYENEEHSPEYTNDDAIHNALKLYSETR 541 (794)
Q Consensus 462 ~elriLv~v~~~~~~~~li~l~~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~ 541 (794)
...||++|+...+.....++.+..++...+ ..++++|+.+-.. .++.++.+.++-+.
T Consensus 169 ~~~~Ilv~~d~s~~s~~al~~a~~la~~~~--~~l~ll~v~~~~~--------------------~~~~l~~~~~~l~~- 225 (294)
T 3loq_A 169 LFDRVLVAYDFSKWADRALEYAKFVVKKTG--GELHIIHVSEDGD--------------------KTADLRVMEEVIGA- 225 (294)
T ss_dssp TTSEEEEECCSSHHHHHHHHHHHHHHHHHT--CEEEEEEECSSSC--------------------CHHHHHHHHHHHHH-
T ss_pred cCCEEEEEECCCHHHHHHHHHHHHHhhhcC--CEEEEEEEccCch--------------------HHHHHHHHHHHHHH-
Confidence 346899999998888888888776654333 5788999876321 12333333333333
Q ss_pred CceEEEEeEEeccCCChhHHHHHHHHhcCCcEEEecCCCCCCCCCCCccccccc-hhHHHHHhhccCCCceEEE
Q 003798 542 GELKFNAFTALAPMRSMYQNICELALDNKATLIILPFHKEYPNNLEGTQILRRG-VQSVNIKVLSHAPCSVGVL 614 (794)
Q Consensus 542 ~~v~v~~~~~vs~~~~m~~dI~~~A~~~~a~lIilp~h~~~~~d~~g~~~~~~~-~~~~n~~vl~~ApCsVgIl 614 (794)
.+++++.... ..+..+.|++.|++.++|||+||.+++.. ..+. ++++.+++++++||||-|+
T Consensus 226 ~~~~~~~~~~---~g~~~~~I~~~a~~~~~dLlV~G~~~~~~--------~~~~~~Gs~~~~vl~~~~~pvLvv 288 (294)
T 3loq_A 226 EGIEVHVHIE---SGTPHKAILAKREEINATTIFMGSRGAGS--------VMTMILGSTSESVIRRSPVPVFVC 288 (294)
T ss_dssp TTCCEEEEEE---CSCHHHHHHHHHHHTTCSEEEEECCCCSC--------HHHHHHHCHHHHHHHHCSSCEEEE
T ss_pred cCCcEEEEEe---cCCHHHHHHHHHHhcCcCEEEEeCCCCCC--------ccceeeCcHHHHHHhcCCCCEEEE
Confidence 3555654443 25899999999999999999999996521 1233 8899999999999999776
No 39
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=97.56 E-value=0.00014 Score=76.55 Aligned_cols=121 Identities=12% Similarity=0.047 Sum_probs=78.7
Q ss_pred ceEEEEEecCCccHHHHHHHHHHHhcCCCeEEEEEEeeccCCCCCchhhhhhHHHHHHHHHhhcCCCCceEEEEEEecCh
Q 003798 633 RHHFVVLFLGGADAREALAYADRMVGNLDVSLTVIRFLSFNHEGDDEMEKKLDDGLVTWFWVKNESNERVRYREVVVRNG 712 (794)
Q Consensus 633 ~~~I~v~f~GG~dDreAL~~A~rma~~~~v~ltvl~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~v~y~e~~v~~~ 712 (794)
.++|++++.|.+.++.|+++|.++|++.+.+++++|+.++. +.+ +.-+++.++++.. .+.+...+...+
T Consensus 7 ~~~ILv~~D~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~-----~~~-~~l~~~~~~~~~~-----~~~~~~~~~~~g 75 (290)
T 3mt0_A 7 IRSILVVIEPDQLEGLALKRAQLIAGVTQSHLHLLVCEKRR-----DHS-AALNDLAQELREE-----GYSVSTNQAWKD 75 (290)
T ss_dssp CCEEEEECCSSCSCCHHHHHHHHHHHHHCCEEEEEEECSSS-----CCH-HHHHHHHHHHHHT-----TCCEEEEEECSS
T ss_pred hceEEEEeCCCccchHHHHHHHHHHHhcCCeEEEEEeeCcH-----HHH-HHHHHHHHHHhhC-----CCeEEEEEEeCC
Confidence 46999999999999999999999999999999999998631 111 2222344444321 223333333233
Q ss_pred HHHHHHHHhh--hccCcccEEEEecccCCCCccccccCCCCCCCccchhhhhhhccCCCCceeEEEEEee
Q 003798 713 AETVASIQAV--NDEAYCDLWIVGRYQGINGKLLEGLEAWSEDNELGVIGDYVASIDFGSTASVLVMQQQ 780 (794)
Q Consensus 713 ~~~~~~i~~~--~~~~~~DL~iVGr~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~~~SvLvvqq~ 780 (794)
. ....|.+. +.+ +||+|+|+++.. + + +.--+|..-+-+.-. +++.||||..+
T Consensus 76 ~-~~~~i~~~a~~~~--~dliV~G~~~~~------~---~-~~~~~gs~~~~vl~~---~~~PVlvv~~~ 129 (290)
T 3mt0_A 76 S-LHQTIIAEQQAEG--CGLIIKQHFPDN------P---L-KKAILTPDDWKLLRF---APCPVLMTKTA 129 (290)
T ss_dssp S-HHHHHHHHHHHHT--CSEEEEECCCSC------T---T-STTSCCHHHHHHHHH---CSSCEEEECCC
T ss_pred C-HHHHHHHHHHhcC--CCEEEEecccCC------c---h-hhcccCHHHHHHHhc---CCCCEEEecCC
Confidence 2 22333333 344 899999998632 1 1 122478888877766 67899999843
No 40
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=97.47 E-value=0.00012 Score=75.92 Aligned_cols=129 Identities=21% Similarity=0.200 Sum_probs=82.1
Q ss_pred EEEEEecCCccHHHHHHHHHHHhcCCCeEEEEEEeeccCCC--------C---Cc---------hhhhhhHHHHHHHHHh
Q 003798 635 HFVVLFLGGADAREALAYADRMVGNLDVSLTVIRFLSFNHE--------G---DD---------EMEKKLDDGLVTWFWV 694 (794)
Q Consensus 635 ~I~v~f~GG~dDreAL~~A~rma~~~~v~ltvl~~~~~~~~--------~---~~---------~~~~~~d~~~l~~~~~ 694 (794)
+|++++.|.++++.|+++|.++|++.+.+++++|+.+.... . ++ +..++..++.++++..
T Consensus 2 ~ILv~vD~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 81 (268)
T 3ab8_A 2 RILLATDGSPQARGAEALAEWLAYKLSAPLTVLFVVDTRLARIPELLDFGALTVPVPVLRTELERALALRGEAVLERVRQ 81 (268)
T ss_dssp CEEEECCSCGGGHHHHHHHHHHHHHHTCCEEEEEEEEHHHHTHHHHC-------CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEcCCCHHHHHHHHHHHHHHHHhCCcEEEEEEeccCCcccccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999998999999999853210 0 00 0112233455666654
Q ss_pred hcCC-CCceEEEEEEecChHHHHHHHHhhhccCcccEEEEecccCCCCccccccCCCCCCCccchhhhhhhccCCCCcee
Q 003798 695 KNES-NERVRYREVVVRNGAETVASIQAVNDEAYCDLWIVGRYQGINGKLLEGLEAWSEDNELGVIGDYVASIDFGSTAS 773 (794)
Q Consensus 695 ~~~~-~~~v~y~e~~v~~~~~~~~~i~~~~~~~~~DL~iVGr~~~~~~~~~~gl~~w~e~~eLG~igd~las~d~~~~~S 773 (794)
.... +-.+.+ .+. .|. ..+.|.+.+.+ +||+|+|+++... ++ +.--+|-..+-+... ++++
T Consensus 82 ~~~~~g~~~~~--~~~-~g~-~~~~I~~~~~~--~dliV~G~~g~~~-----~~----~~~~~Gs~~~~v~~~---a~~P 143 (268)
T 3ab8_A 82 SALAAGVAVEA--VLE-EGV-PHEAILRRARA--ADLLVLGRSGEAH-----GD----GFGGLGSTADRVLRA---SPVP 143 (268)
T ss_dssp HHHHTTCCEEE--EEE-EEC-HHHHHHHHHTT--CSEEEEESSCTTS-----CT----TCCSCCHHHHHHHHH---CSSC
T ss_pred HHHhCCCCeEE--EEe-cCC-HHHHHHhhccC--CCEEEEeccCCCc-----cc----cccccchhHHHHHHh---CCCC
Confidence 4321 112322 222 332 33344444666 9999999975320 11 122478888888876 6789
Q ss_pred EEEEEeec
Q 003798 774 VLVMQQQV 781 (794)
Q Consensus 774 vLvvqq~~ 781 (794)
||||....
T Consensus 144 Vlvv~~~~ 151 (268)
T 3ab8_A 144 VLLAPGEP 151 (268)
T ss_dssp EEEECSSC
T ss_pred EEEECCCC
Confidence 99998654
No 41
>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta sheet, transport protein; 1.90A {Methanosarcina acetivorans}
Probab=96.17 E-value=0.1 Score=53.61 Aligned_cols=219 Identities=11% Similarity=0.002 Sum_probs=137.3
Q ss_pred ceeEEEeccCCchHHHHHHHHhhCCCCCCCceEEEEEEeeecCCCccccccccccCCCCCCCcchHHHHHHHHhhhhcCc
Q 003798 464 LRLVVCVHEEESVAGLINLLEVSCPTVDSPFSIYSLHLIELIGRGIPLLVDYENEEHSPEYTNDDAIHNALKLYSETRGE 543 (794)
Q Consensus 464 lriLv~v~~~~~~~~li~l~~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~~ 543 (794)
-.+||+..+|..-.+++.++..+..++ ..+.+.++..- ++ .+.+ .++ +.++++|-++ .+
T Consensus 21 P~iLV~sg~p~~~~~li~la~~lt~~~---G~ltv~~i~p~-~~-~~~l--------------~~q-l~~l~~~l~~-r~ 79 (294)
T 3g40_A 21 ANLLVPVEDPRELMGTFDFLRDITYPK---GSVKLLGLAGN-TD-KENL--------------LSQ-LPSISEGFQE-EG 79 (294)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHTTT---CEEEEEECC----C-TTCH--------------HHH-HHHHHHHHHH-TT
T ss_pred CcEEEecCCchhhhhHHHHHHHhccCc---eeEEEEEEccC-CC-ccHH--------------HHH-HHHHHHHHHh-CC
Confidence 479999999999999999999998766 46677776421 11 1100 122 2555555444 55
Q ss_pred eEEEEeEEeccCCChhHHHHHHHHhcC-----CcEEEecCCCCCCCCCCCccccccchhHHHHHhhccCCCceEEEecC-
Q 003798 544 LKFNAFTALAPMRSMYQNICELALDNK-----ATLIILPFHKEYPNNLEGTQILRRGVQSVNIKVLSHAPCSVGVLVDK- 617 (794)
Q Consensus 544 v~v~~~~~vs~~~~m~~dI~~~A~~~~-----a~lIilp~h~~~~~d~~g~~~~~~~~~~~n~~vl~~ApCsVgIlvdR- 617 (794)
+..-..+.. .++.++++-...+..+ .+.|+|+|..+.. ....+++++++..+. --.|-||-+.
T Consensus 80 v~a~~~vi~--a~d~~~G~~~lvq~yglg~l~PNTilLg~~~~~e--------~~~~y~~~i~~~~~~-~~nVlil~~~~ 148 (294)
T 3g40_A 80 VFSSWTIID--TAEFEENLVVGMEALTGSFFRPSILFLRLPENRD--------RDEEIREIIRKASMY-RMGVLLFSKHP 148 (294)
T ss_dssp CEEEEEEC-------CHHHHHHHHHHTTCSSCSCEEEEECCSSGG--------GHHHHHHHHHHHHHT-TCEEEEEECCT
T ss_pred ceeEEEEEe--cCChhHHHHHHHHHcCCCCCCCCEEEeCCCCChh--------hhHHHHHHHHHHHHh-CceEEEEecCC
Confidence 655444444 4589999999988876 6899999974421 112388888776544 6666666321
Q ss_pred CCCCCCCcccCCCccceEEEEEecC--------C--ccHHHHHHHHHHHhcCCCeEEEEEEeeccCCCCCchhhhhhHHH
Q 003798 618 GNFRNPMHAAGGSMRRHHFVVLFLG--------G--ADAREALAYADRMVGNLDVSLTVIRFLSFNHEGDDEMEKKLDDG 687 (794)
Q Consensus 618 g~~~~~~~~~~~~~~~~~I~v~f~G--------G--~dDreAL~~A~rma~~~~v~ltvl~~~~~~~~~~~~~~~~~d~~ 687 (794)
.... ...++|=+...| | .+-..++-+|-.+.++.++++.+..++++ |.+++..+.
T Consensus 149 ~~~f---------g~~~~IdvW~~~~~~~W~~g~~~~Ng~LmlllAylL~~nW~A~I~L~~vV~d------e~a~~~a~~ 213 (294)
T 3g40_A 149 QAGL---------GRQNLINLWIENRGLDWDISMELGNMDLALLIAYKLKSNWKASLSFMTFAPT------AIQAQAAEN 213 (294)
T ss_dssp TTTT---------TTSCEEEEECCCC---CCCCSCCCTTHHHHHHHHHHHHHHTCEEEEEEECSS------HHHHHHHHH
T ss_pred ccCC---------CCCceEEEecCCCCCcccccccccchhHHHHHHHHHhhCcCCeEEEEEecCC------HHHHHHHHH
Confidence 1111 113577766433 2 25567888999999899999999999853 356667778
Q ss_pred HHHHHHhhcCCCCceEEEEEEecChHHHHHHHHhhhccCcccEEEEecccC
Q 003798 688 LVTWFWVKNESNERVRYREVVVRNGAETVASIQAVNDEAYCDLWIVGRYQG 738 (794)
Q Consensus 688 ~l~~~~~~~~~~~~v~y~e~~v~~~~~~~~~i~~~~~~~~~DL~iVGr~~~ 738 (794)
+++++.+..-..... + . |. .+-.++|++. .+ -||+++|-...
T Consensus 214 ~l~~Lv~~~Ri~a~~-~--v-v~--~~F~~il~~s-~~--ADL~flGl~~~ 255 (294)
T 3g40_A 214 FLQSLAELARIPNVK-M--Q-VL--RENPIKSSKL-PF--ASLHIFSLDPN 255 (294)
T ss_dssp HHHHHHHHHTCCSCE-E--E-EE--SSCTTTSSSC-CC--CSEEEEECCSS
T ss_pred HHHHHHHHhcCCceE-E--E-ec--CchHHHHhhC-cC--CCEEEEcCCCC
Confidence 888887765332222 2 2 22 2345566665 44 69999999653
No 42
>1efv_B Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 PDB: 1t9g_S* 2a1u_B* 2a1t_S*
Probab=70.33 E-value=6.9 Score=39.72 Aligned_cols=92 Identities=12% Similarity=0.113 Sum_probs=53.7
Q ss_pred CccHHHHHHHHHHHhcCCCe--EEEEEEeeccCCCCCchhhhhhHHHHHHHHHhhcCCCCceEEEE-EE----ecChHHH
Q 003798 643 GADAREALAYADRMVGNLDV--SLTVIRFLSFNHEGDDEMEKKLDDGLVTWFWVKNESNERVRYRE-VV----VRNGAET 715 (794)
Q Consensus 643 G~dDreAL~~A~rma~~~~v--~ltvl~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~v~y~e-~~----v~~~~~~ 715 (794)
.|.|.+|++.|.|+.+. +. +++++-+=++. .++.+++.... +.+++...+ -- -.+...+
T Consensus 39 np~d~~Ale~A~~Lke~-g~~~~V~av~~G~~~-----------a~~~lr~ala~--GaD~vi~v~~d~~~~~~~~~~~~ 104 (255)
T 1efv_B 39 NPFCEIAVEEAVRLKEK-KLVKEVIAVSCGPAQ-----------CQETIRTALAM--GADRGIHVEVPPAEAERLGPLQV 104 (255)
T ss_dssp CHHHHHHHHHHHHHHHT-TSCSEEEEEEEESTT-----------HHHHHHHHHHH--TCSEEEEEECCHHHHTTCCHHHH
T ss_pred CHHHHHHHHHHHHHHhc-CCCceEEEEEeCChh-----------HHHHHHHHHhc--CCCEEEEEecChhhcccCCHHHH
Confidence 89999999999999976 54 88888765321 22234333222 345554433 11 1123344
Q ss_pred HHHHHhhh--ccCcccEEEEecccCC-----CCccccccCCC
Q 003798 716 VASIQAVN--DEAYCDLWIVGRYQGI-----NGKLLEGLEAW 750 (794)
Q Consensus 716 ~~~i~~~~--~~~~~DL~iVGr~~~~-----~~~~~~gl~~w 750 (794)
..+|.+.. .+ ||+++.|++... -.|.++.+.+|
T Consensus 105 A~~La~~i~~~~--~dlVl~G~~s~d~d~~~v~p~lA~~L~~ 144 (255)
T 1efv_B 105 ARVLAKLAEKEK--VDLVLLGKQAIDDDCNQTGQMTAGFLDW 144 (255)
T ss_dssp HHHHHHHHHHHT--CSEEEEESCCTTTCCCCHHHHHHHHHTC
T ss_pred HHHHHHHHHhcC--CCEEEEeCcccCCchhhHHHHHHHHhCC
Confidence 44444442 24 899999998632 24555666666
No 43
>1efp_B ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} SCOP: c.26.2.3
Probab=68.91 E-value=7.2 Score=39.51 Aligned_cols=92 Identities=13% Similarity=0.093 Sum_probs=54.0
Q ss_pred CccHHHHHHHHHHHhcCCCe--EEEEEEeeccCCCCCchhhhhhHHHHHHHHHhhcCCCCceEEEE-EE----ecChHHH
Q 003798 643 GADAREALAYADRMVGNLDV--SLTVIRFLSFNHEGDDEMEKKLDDGLVTWFWVKNESNERVRYRE-VV----VRNGAET 715 (794)
Q Consensus 643 G~dDreAL~~A~rma~~~~v--~ltvl~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~v~y~e-~~----v~~~~~~ 715 (794)
.|.|.+|++.|.|+.+. +. +++++-+=++. .++.+++.... +-+++...+ -- -.+...+
T Consensus 36 np~d~~Ale~A~~Lke~-g~~~~V~av~~G~~~-----------a~~~lr~ala~--GaD~vi~v~~d~~~~~~~~~~~~ 101 (252)
T 1efp_B 36 NPFDEIAVEEAIRLKEK-GQAEEIIAVSIGVKQ-----------AAETLRTALAM--GADRAILVVAADDVQQDIEPLAV 101 (252)
T ss_dssp CHHHHHHHHHHHHHHTT-TSCSEEEEEEEESGG-----------GHHHHHHHHHH--TCSEEEEEECCSSTTCCCCHHHH
T ss_pred CHHHHHHHHHHHHHHhc-CCCceEEEEEeCChh-----------HHHHHHHHHhc--CCCEEEEEecChhhcccCCHHHH
Confidence 89999999999999976 54 88888765321 12233333222 345554443 11 1133444
Q ss_pred HHHHHhhh--ccCcccEEEEecccCC-----CCccccccCCC
Q 003798 716 VASIQAVN--DEAYCDLWIVGRYQGI-----NGKLLEGLEAW 750 (794)
Q Consensus 716 ~~~i~~~~--~~~~~DL~iVGr~~~~-----~~~~~~gl~~w 750 (794)
..+|.+.. .+ ||+++.|++... -.|.++.+.+|
T Consensus 102 a~~La~~i~~~~--~dlVl~G~~s~d~~~~~v~p~lA~~L~~ 141 (252)
T 1efp_B 102 AKILAAVARAEG--TELIIAGKQAIDNDMNATGQMLAAILGW 141 (252)
T ss_dssp HHHHHHHHHHHT--CSEEEEESCCTTTCCCCHHHHHHHHHTC
T ss_pred HHHHHHHHHhcC--CCEEEEcCCccCCchhhHHHHHHHHhCC
Confidence 44554442 24 999999998632 24555666666
No 44
>1o97_C Electron transferring flavoprotein beta-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 PDB: 1o95_C* 1o96_A* 1o94_C* 3clr_C* 3cls_C* 3clt_C* 3clu_C*
Probab=65.07 E-value=5.5 Score=40.66 Aligned_cols=93 Identities=13% Similarity=0.025 Sum_probs=53.3
Q ss_pred CccHHHHHHHHHHHhcCCCe--EEEEEEeeccCCCCCchhhhhhHHHHHHHHHhhcCCCCceEEEEEEe---cChHHHHH
Q 003798 643 GADAREALAYADRMVGNLDV--SLTVIRFLSFNHEGDDEMEKKLDDGLVTWFWVKNESNERVRYREVVV---RNGAETVA 717 (794)
Q Consensus 643 G~dDreAL~~A~rma~~~~v--~ltvl~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~v~y~e~~v---~~~~~~~~ 717 (794)
.|.|.+|++.|.|+++..+. +++++.+=++. .++.+++.... +-+++...+--. .+...+..
T Consensus 36 np~d~~ale~A~~Lke~~g~~~~V~av~~G~~~-----------~~~~lr~ala~--GaD~vi~v~d~~~~~~~~~~~a~ 102 (264)
T 1o97_C 36 NEWDDFSLEEAMKIKESSDTDVEVVVVSVGPDR-----------VDESLRKCLAK--GADRAVRVWDDAAEGSDAIVVGR 102 (264)
T ss_dssp CHHHHHHHHHHHHHHHHCSSCCEEEEEEESCGG-----------GHHHHHHHHHT--TCSEEEEECCGGGTTCCHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcCCCceEEEEEeCchh-----------HHHHHHHHHhc--CCCEEEEEcCcccccCCHHHHHH
Confidence 89999999999999875444 88887764211 12234433222 345554433111 12334444
Q ss_pred HHHhhhc--cCcccEEEEecccCC-----CCccccccCCC
Q 003798 718 SIQAVND--EAYCDLWIVGRYQGI-----NGKLLEGLEAW 750 (794)
Q Consensus 718 ~i~~~~~--~~~~DL~iVGr~~~~-----~~~~~~gl~~w 750 (794)
+|.+..+ + ||+++.|++... -.|.++.+.+|
T Consensus 103 ~La~~i~~~~--~dlVl~G~~s~d~~~~~v~p~lA~~L~~ 140 (264)
T 1o97_C 103 ILTEVIKKEA--PDMVFAGVQSSDQAYASTGISVASYLNW 140 (264)
T ss_dssp HHHHHHHHHC--CSEEEEESCCTTTCCCCHHHHHHHHHTC
T ss_pred HHHHHHHhcC--CCEEEEcCCccCCchhhHHHHHHHHhCC
Confidence 5544422 4 899999998632 24445555566
No 45
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=59.33 E-value=38 Score=35.62 Aligned_cols=126 Identities=10% Similarity=0.044 Sum_probs=64.1
Q ss_pred HHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHhcC
Q 003798 302 LWLGLVIPDGPPLGATLVERTETLIMEIFMPFAFAVVGMYTDVYAMFEFGWSGLSPLFGMIVTGYISKLLGTLIPSLLCQ 381 (794)
Q Consensus 302 flaGl~i~~~~~~~~~l~~kl~~~~~~~~~PlfF~~~G~~~dl~~l~~~~~~~~~~~~~i~~~~~l~K~~~~~l~~~~~~ 381 (794)
.++|...|..... ++.. ....+.+-+...|++++..++.+ ....+.......+.-++...+.++..++.++
T Consensus 28 ~~lg~~~P~~~~~-------~~~~-i~~~l~~~mf~~G~~l~~~~l~~-~~~~~~~~~~~l~~~~vi~Pll~~~l~~~~~ 98 (332)
T 3zux_A 28 AAAAFFAPDTFKW-------AGPY-IPWLLGIIMFGMGLTLKPSDFDI-LFKHPKVVIIGVIAQFAIMPATAWCLSKLLN 98 (332)
T ss_dssp HHHHHHCGGGTGG-------GGGG-HHHHHHHHHHHHHHHCCGGGGHH-HHHSHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcchhhhh-------hHHH-HHHHHHHHHHHHHhCCCHHHHHH-HHhCcHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4667777763221 1222 23456677778899999888751 1123443444455566667777787788777
Q ss_pred CChHHHHHHHHHH-HhHHHHHHHHHHhhhhccccCCc-hhHHHHHHHHHHHHhHHHHHHhhc
Q 003798 382 MPFRDSLTLSLMM-SLRGQVELLLYIHWIDKLIIGVP-PFTLLVLSTVVITGIAGPLISFLY 441 (794)
Q Consensus 382 ~~~~e~~~lgl~m-~~kG~~~l~~~~~~~~~~ii~~~-~~~~lv~~~ll~t~i~~plv~~l~ 441 (794)
.+...+..+-+.. .|-|..+.+....+. | |.+ ......++.++ +.++.|+.-.++
T Consensus 99 l~~~~~~Glil~~~~P~~~~s~v~t~~a~--G--d~~la~~~~~~stll-~~~~~Pl~~~l~ 155 (332)
T 3zux_A 99 LPAEIAVGVILVGCCPGGTASNVMTYLAR--G--NVALSVAVTSVSTLT-SPLLTPAIFLML 155 (332)
T ss_dssp CCHHHHHHHHHHHHSCCCTHHHHHHHHTT--C--CHHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred CChHHHHHHHHHhcCCchhHHHHHHHHhC--C--CHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 7654333322222 333444444333221 2 111 22233334444 445556655544
No 46
>1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae} SCOP: c.26.2.2
Probab=56.60 E-value=10 Score=39.92 Aligned_cols=56 Identities=13% Similarity=-0.030 Sum_probs=40.1
Q ss_pred EEEEEecCCccHHHHHHHHHHHhcCCCeEEEEEEeeccCCCCCchhhhhhHHHHHHHHHhhcC
Q 003798 635 HFVVLFLGGADAREALAYADRMVGNLDVSLTVIRFLSFNHEGDDEMEKKLDDGLVTWFWVKNE 697 (794)
Q Consensus 635 ~I~v~f~GG~dDreAL~~A~rma~~~~v~ltvl~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~ 697 (794)
++++.|.||+|+--.|.++.+.....+..+.++++.+.-. .....++++++.+++.
T Consensus 48 ~ivVa~SGGkDS~vLL~Ll~~~~~~~~~~i~vv~vDtg~~-------~~et~~~v~~~~~~~g 103 (325)
T 1zun_A 48 NPVMLYSIGKDSAVMLHLARKAFFPGKLPFPVMHVDTRWK-------FQEMYRFRDQMVEEMG 103 (325)
T ss_dssp SEEEECCSSHHHHHHHHHHHHHHTTSCCSSCEEEECCSCC-------CHHHHHHHHHHHHTTT
T ss_pred CEEEEEcChHHHHHHHHHHHHhccccCCCEEEEEEECCCC-------CHHHHHHHHHHHHHcC
Confidence 7899999999999999999998764445667788754321 1224567777776653
No 47
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8
Probab=54.49 E-value=21 Score=30.38 Aligned_cols=57 Identities=9% Similarity=0.045 Sum_probs=41.2
Q ss_pred ChhHHHHHHHHhcCCcEEEecCCCCCCCCCCCccccccc-hhHHHHHhhccCCCceEEEecCCC
Q 003798 557 SMYQNICELALDNKATLIILPFHKEYPNNLEGTQILRRG-VQSVNIKVLSHAPCSVGVLVDKGN 619 (794)
Q Consensus 557 ~m~~dI~~~A~~~~a~lIilp~h~~~~~d~~g~~~~~~~-~~~~n~~vl~~ApCsVgIlvdRg~ 619 (794)
...+.|.+++++.+++.|++|..++. | |+...... .+.+.+++-++ +.+| .++|.-+
T Consensus 38 ~~~~~l~~li~e~~v~~iVvGlP~~m--d--Gt~~~~~~~~~~f~~~L~~~-~lpV-~~~DERl 95 (98)
T 1iv0_A 38 EDVEALLDFVRREGLGKLVVGLPLRT--D--LKESAQAGKVLPLVEALRAR-GVEV-ELWDERF 95 (98)
T ss_dssp HHHHHHHHHHHHHTCCEEEEECCCCC--C--SSSCCCSSTTHHHHHHHHHT-TCEE-EEECCSC
T ss_pred HHHHHHHHHHHHcCCCEEEEeeccCC--C--CCcCHHHHHHHHHHHHHhcC-CCCE-EEECCCC
Confidence 45678899999999999999998774 3 55332222 77777777776 8888 6666543
No 48
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase, PP-type, putative cell cycle PR PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1
Probab=47.80 E-value=29 Score=38.00 Aligned_cols=58 Identities=16% Similarity=0.015 Sum_probs=44.1
Q ss_pred eEEEEEecCCccHHHHHHHHHHHhcC-CCeEEEEEEeeccCCCCCchhhhhhHHHHHHHHHhhc
Q 003798 634 HHFVVLFLGGADAREALAYADRMVGN-LDVSLTVIRFLSFNHEGDDEMEKKLDDGLVTWFWVKN 696 (794)
Q Consensus 634 ~~I~v~f~GG~dDreAL~~A~rma~~-~~v~ltvl~~~~~~~~~~~~~~~~~d~~~l~~~~~~~ 696 (794)
.+|+|.+.||+|.--+|.++.++.+. .+.++.++|+...-. .+.+.+.++++++..+.
T Consensus 14 ~~vlVa~SGG~DS~~Ll~ll~~~~~~~~g~~v~avhvdhglr-----~~s~~~~~~v~~~~~~l 72 (433)
T 1ni5_A 14 RQILVAFSGGLDSTVLLHQLVQWRTENPGVALRAIHVHHGLS-----ANADAWVTHCENVCQQW 72 (433)
T ss_dssp SEEEEECCSBHHHHHHHHHHHHHHTTSTTCEEEEEEECCSCC-----SSHHHHHHHHHHHHHHT
T ss_pred CEEEEEEcchHHHHHHHHHHHHHHHhcCCCeEEEEEEECCCC-----cccHHHHHHHHHHHHHc
Confidence 48999999999999999999998876 788999999864321 12234556777776655
No 49
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A*
Probab=45.81 E-value=29 Score=36.17 Aligned_cols=58 Identities=12% Similarity=0.201 Sum_probs=42.7
Q ss_pred eEEEEEecCCccHHHHHHHHHHHhcCCCeE-EEEEEeeccCCCCCchhhhhhHHHHHHHHHhhc
Q 003798 634 HHFVVLFLGGADAREALAYADRMVGNLDVS-LTVIRFLSFNHEGDDEMEKKLDDGLVTWFWVKN 696 (794)
Q Consensus 634 ~~I~v~f~GG~dDreAL~~A~rma~~~~v~-ltvl~~~~~~~~~~~~~~~~~d~~~l~~~~~~~ 696 (794)
.+|++.+.||+|.--+|.++.+..+..+.+ +.++++...-. .+.+.|.++++++..+.
T Consensus 25 ~~vlva~SGG~DS~~Ll~ll~~~~~~~g~~~v~av~vd~g~r-----~~s~~~~~~v~~~a~~l 83 (317)
T 1wy5_A 25 RRVLIAFSGGVDSVVLTDVLLKLKNYFSLKEVALAHFNHMLR-----ESAERDEEFCKEFAKER 83 (317)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHSTTTTTCSEEEEEEEECCSS-----THHHHHHHHHHHHHHHH
T ss_pred CEEEEEecchHHHHHHHHHHHHHHHHcCCCEEEEEEEECCCC-----cccHHHHHHHHHHHHHc
Confidence 489999999999999999999887766677 88888864321 12234566677776655
No 50
>2k3c_A TMIX peptide; membrane peptide, dodecylphosphocholine micelle, NHE1, Na+/H+ transporter, metal transport; NMR {Synthetic}
Probab=38.49 E-value=0.79 Score=30.87 Aligned_cols=27 Identities=11% Similarity=0.148 Sum_probs=23.6
Q ss_pred HHHHHHHHhchhhhHHHHHHHhhcCCC
Q 003798 285 VMGFLTDMFGMAIANGPLWLGLVIPDG 311 (794)
Q Consensus 285 ~~~~~ae~~G~~~~lgaflaGl~i~~~ 311 (794)
+++.++|.+|+|++++.+.+|+.+.+.
T Consensus 5 ~~Yl~AE~~~lSGIlavv~~Gi~~~~y 31 (33)
T 2k3c_A 5 MAYLSAELFHLSGIMALIASGVVMRPK 31 (33)
T ss_dssp TTTGGGSSSTTTTTTTTTTTTSCCCCC
T ss_pred HHHHHHHHhCcChHHHHHHHHHHHhhc
Confidence 456789999999999999999998764
No 51
>2wsi_A FAD synthetase; transferase, nucleotidyltransferase, nucleotide-binding; HET: FAD; 1.90A {Saccharomyces cerevisiae}
Probab=37.72 E-value=44 Score=34.61 Aligned_cols=55 Identities=11% Similarity=-0.064 Sum_probs=39.1
Q ss_pred EEEEEecCCccHHHHHHHHHHHh-c-----------------CCCeEEEEEEeeccCCCCCchhhhhhHHHHHHHHHhhc
Q 003798 635 HFVVLFLGGADAREALAYADRMV-G-----------------NLDVSLTVIRFLSFNHEGDDEMEKKLDDGLVTWFWVKN 696 (794)
Q Consensus 635 ~I~v~f~GG~dDreAL~~A~rma-~-----------------~~~v~ltvl~~~~~~~~~~~~~~~~~d~~~l~~~~~~~ 696 (794)
+|++-|.||+|+--.|.++.+.. + .+...+.++++.+.. +.....++++++.+++
T Consensus 55 ~i~vafSGGKDS~VLL~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~vv~iDtg~-------~fpet~~fv~~~~~~y 127 (306)
T 2wsi_A 55 EISFSYNGGKDCQVLLLLYLSCLWEYFFIKAQNSQFDFEFQSFPMQRLPTVFIDQEE-------TFPTLENFVLETSERY 127 (306)
T ss_dssp SEEEECCSCHHHHHHHHHHHHHHHHHHHHHHHHC--------CCCCCEEEEECCCTT-------CCHHHHHHHHHHHHHT
T ss_pred CEEEEecCCHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCeeEEEEeCCC-------CCHHHHHHHHHHHHHc
Confidence 79999999999999999998863 1 134567778775332 2344566777777665
No 52
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}
Probab=34.48 E-value=50 Score=36.40 Aligned_cols=59 Identities=15% Similarity=0.133 Sum_probs=45.2
Q ss_pred eEEEEEecCCccHHHHHHHHHHHhcCCCeEEEEEEeeccCCCCCchhhhhhHHHHHHHHHhhc
Q 003798 634 HHFVVLFLGGADAREALAYADRMVGNLDVSLTVIRFLSFNHEGDDEMEKKLDDGLVTWFWVKN 696 (794)
Q Consensus 634 ~~I~v~f~GG~dDreAL~~A~rma~~~~v~ltvl~~~~~~~~~~~~~~~~~d~~~l~~~~~~~ 696 (794)
.+|+|.+.||+|.--+|.++.++.+..+.++.++|+...-. ..+.+.|.++++++..+.
T Consensus 19 ~~vlVa~SGG~DS~~Ll~ll~~~~~~~~~~v~avhvdhglr----g~~s~~~~~~v~~~~~~l 77 (464)
T 3a2k_A 19 AAVIVGVSGGPDSLALLHVFLSLRDEWKLQVIAAHVDHMFR----GRESEEEMEFVKRFCVER 77 (464)
T ss_dssp SBEEEECCSSHHHHHHHHHHHHHHHTTTCBCEEEEEECTTC----THHHHHHHHHHHHHHHHT
T ss_pred CEEEEEEcCcHHHHHHHHHHHHHHHHcCCeEEEEEEECCCC----ccccHHHHHHHHHHHHHc
Confidence 48999999999999999999999887788899999864321 022345667788777665
No 53
>1nu0_A Hypothetical protein YQGF; structural genomics, structure 2 function project, S2F, unknown function; 1.60A {Escherichia coli} SCOP: c.55.3.8 PDB: 1nmn_A 1ovq_A
Probab=33.66 E-value=47 Score=30.11 Aligned_cols=59 Identities=15% Similarity=0.112 Sum_probs=41.2
Q ss_pred CChhHHHHHHHHhcCCcEEEecCCCCCCCCCCCccccccc-hhHHHHHhhccCCCceEEEecCCC
Q 003798 556 RSMYQNICELALDNKATLIILPFHKEYPNNLEGTQILRRG-VQSVNIKVLSHAPCSVGVLVDKGN 619 (794)
Q Consensus 556 ~~m~~dI~~~A~~~~a~lIilp~h~~~~~d~~g~~~~~~~-~~~~n~~vl~~ApCsVgIlvdRg~ 619 (794)
+...+.|.++.++.+++.||+|..++. | |+...... .+.+.+++-++-+.+| .++|.-+
T Consensus 39 ~~~~~~l~~li~e~~v~~iVvGlP~~m--d--Gt~~~~~~~~~~f~~~L~~~~~lpV-~~~DERl 98 (138)
T 1nu0_A 39 TPDWNIIERLLKEWQPDEIIVGLPLNM--D--GTEQPLTARARKFANRIHGRFGVEV-KLHDERL 98 (138)
T ss_dssp EECHHHHHHHHHHHCCSEEEEEEEECT--T--SCBCHHHHHHHHHHHHHHHHHCCCE-EEEEEEC
T ss_pred chHHHHHHHHHHHcCCCEEEEecccCC--C--cCcCHHHHHHHHHHHHHHHHhCCCE-EEEcCCc
Confidence 345789999999999999999988764 3 65322222 6666766655557888 5666544
No 54
>2l0e_A Sodium/hydrogen exchanger 1; transmembrane helix, membrane protein, NHE1; NMR {Homo sapiens}
Probab=32.44 E-value=14 Score=24.74 Aligned_cols=26 Identities=0% Similarity=0.011 Sum_probs=22.8
Q ss_pred HHHHHHHHHhhccHHHHHHHHHhcCc
Q 003798 171 SIGAITTSLAVTSFPVLNPILKDLNL 196 (794)
Q Consensus 171 ~~l~lg~~ls~Ts~~vv~~iL~el~l 196 (794)
.++++|+++|+|++..+..++++++.
T Consensus 5 ~~llfGAiis~TDpVavlaif~~~~v 30 (33)
T 2l0e_A 5 DNLLFGSIISAVDPVAVLAVFEEIHK 30 (33)
T ss_dssp CCCTTHHHHTTCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHccCCChHHHHHHHHHcCC
Confidence 46788999999999999999999875
No 55
>3fwk_A FMN adenylyltransferase; FAD biosynthesis, alpha/beta protein, rossmann- like fold, APO-form, extended loop region; HET: BGC; 1.20A {Candida glabrata} PDB: 3g59_A* 3g5a_A* 3g6k_A*
Probab=30.08 E-value=1.6e+02 Score=30.45 Aligned_cols=91 Identities=13% Similarity=0.028 Sum_probs=50.6
Q ss_pred EEEEEecCCccHHHHHHHHHHHh-c-----------------CCCeEEEEEEeeccCCCCCchhhhhhHHHHHHHHHhhc
Q 003798 635 HFVVLFLGGADAREALAYADRMV-G-----------------NLDVSLTVIRFLSFNHEGDDEMEKKLDDGLVTWFWVKN 696 (794)
Q Consensus 635 ~I~v~f~GG~dDreAL~~A~rma-~-----------------~~~v~ltvl~~~~~~~~~~~~~~~~~d~~~l~~~~~~~ 696 (794)
++++.|.||+|+--.|.++.+-- + .|...+.|+.+-+... -..-.++++++.+++
T Consensus 60 ~ialSfSGGKDStVLLhL~~kal~~~~~~~~~~~~~~~~~~~~p~~~ipvifiDTG~~-------FpET~ef~d~~~~~y 132 (308)
T 3fwk_A 60 EISFSYNGGKDCQVLLLLYLSCLWEYYIVKLSQSQFDGKFHRFPLTKLPTVFIDHDDT-------FKTLENFIEETSLRY 132 (308)
T ss_dssp SEEEECCSSHHHHHHHHHHHHHHHHHHTCCE-----------------EEEECCCTTC-------CHHHHHHHHHHHHHT
T ss_pred CEEEEecCChhHHHHHHHHHHHhhhhcccccccccccccccccCCCCccEEEEeCCCC-------CHHHHHHHHHHHHHh
Confidence 68999999999999999998852 1 1234677777643321 122335777776665
Q ss_pred CCCCceEEEEEEec---ChHHHHHHHHhhhccCcccEEEEecccC
Q 003798 697 ESNERVRYREVVVR---NGAETVASIQAVNDEAYCDLWIVGRYQG 738 (794)
Q Consensus 697 ~~~~~v~y~e~~v~---~~~~~~~~i~~~~~~~~~DL~iVGr~~~ 738 (794)
.. ++ .....+ .-.+....+++.... +|.++.|.|..
T Consensus 133 gL--~L--~v~~p~~~~~~~~~cc~~~K~~P~--~~AwitG~RR~ 171 (308)
T 3fwk_A 133 SL--SL--YESDRDKCETMAEAFETFLQVFPE--TKAIVIGIRHT 171 (308)
T ss_dssp TE--EE--EECCTTSCCCHHHHHHHHHHHCTT--CCEEECCCCTT
T ss_pred CC--cE--EEeCCCCCHHHHHHHHHHHHhCCC--CCEEEEEeecC
Confidence 32 11 110000 011223334444434 89999999876
No 56
>2oq2_A Phosphoadenosine phosphosulfate reductase; sulfate reduction, PAPS reductase, oxidoreductase; HET: A3P; 2.10A {Saccharomyces cerevisiae}
Probab=28.31 E-value=50 Score=33.26 Aligned_cols=55 Identities=9% Similarity=-0.066 Sum_probs=39.5
Q ss_pred EEEEEecCCccHHHHHHHHHHHhcCCCeEEEEEEeeccCCCCCchhhhhhHHHHHHHHHhhcC
Q 003798 635 HFVVLFLGGADAREALAYADRMVGNLDVSLTVIRFLSFNHEGDDEMEKKLDDGLVTWFWVKNE 697 (794)
Q Consensus 635 ~I~v~f~GG~dDreAL~~A~rma~~~~v~ltvl~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~ 697 (794)
++++.|.||+|+--.|.++.+.... +..+.++++.+... ...+.++++++.+++.
T Consensus 43 ~v~va~SGGkDS~vLL~ll~~~~~~-~~~i~vv~iDtg~~-------~~et~~~v~~~~~~~g 97 (261)
T 2oq2_A 43 HLFQTTAFGLTGLVTIDMLSKLSEK-YYMPELLFIDTLHH-------FPQTLTLKNEIEKKYY 97 (261)
T ss_dssp SEEEECCCCHHHHHHHHHHHHHTTT-SCCCEEEEECCSCB-------CHHHHHHHHHHHHHHT
T ss_pred CEEEEecCCHHHHHHHHHHHHhCcc-CCCeeEEEecCCCC-------CHHHHHHHHHHHHHhC
Confidence 7899999999999999999998764 45567777643321 1234567777776653
No 57
>1sur_A PAPS reductase; assimilatory sulfate reduction, 3-phospho-adenylyl-sulfate reductase, oxidoreductase; 2.00A {Escherichia coli} SCOP: c.26.2.2
Probab=24.09 E-value=76 Score=30.61 Aligned_cols=51 Identities=14% Similarity=-0.044 Sum_probs=36.6
Q ss_pred EEEEEecCCccHHHHHHHHHHHhcCCCeEEEEEEeeccCCCCCchhhhhhHHHHHHHHHhhc
Q 003798 635 HFVVLFLGGADAREALAYADRMVGNLDVSLTVIRFLSFNHEGDDEMEKKLDDGLVTWFWVKN 696 (794)
Q Consensus 635 ~I~v~f~GG~dDreAL~~A~rma~~~~v~ltvl~~~~~~~~~~~~~~~~~d~~~l~~~~~~~ 696 (794)
+|+|-|.||+|+--.|.++.+.. + ++.++++...-. ...+.++++++..+.
T Consensus 46 ~v~Va~SGGkDS~vLL~ll~~~~--~--~v~~v~vd~g~~-------~~e~~~~v~~~~~~~ 96 (215)
T 1sur_A 46 EYVLSSSFGIQAAVSLHLVNQIR--P--DIPVILTDTGYL-------FPETYRFIDELTDKL 96 (215)
T ss_dssp EEEEECCCCTTHHHHHHHHHHHS--T--TCEEEEEECSCB-------CHHHHHHHHHHHHHT
T ss_pred CEEEEecCCHHHHHHHHHHHHhC--C--CCeEEEeeCCCC-------CHHHHHHHHHHHHHh
Confidence 89999999999999999999885 3 356777654321 122456777777665
No 58
>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=23.59 E-value=1.2e+02 Score=27.97 Aligned_cols=36 Identities=22% Similarity=0.252 Sum_probs=31.3
Q ss_pred EEeEEeccCCChhHHHHHHHHhcCCcEEEecCCCCC
Q 003798 547 NAFTALAPMRSMYQNICELALDNKATLIILPFHKEY 582 (794)
Q Consensus 547 ~~~~~vs~~~~m~~dI~~~A~~~~a~lIilp~h~~~ 582 (794)
.-...+-|..+|+..|.++|++-.+|+||-|.....
T Consensus 91 DLIYsirPP~El~~~i~~lA~~v~adliI~pL~~E~ 126 (153)
T 2k4m_A 91 ALIYSIRPPAEIHSSLMRVADAVGARLIIKPLTGED 126 (153)
T ss_dssp EEEEEESCCTTTHHHHHHHHHHHTCEEEEECBTTBC
T ss_pred CEEEEcCCCHHHHHHHHHHHHHcCCCEEEEcCCCCc
Confidence 345577799999999999999999999999998654
No 59
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A
Probab=22.85 E-value=3.1e+02 Score=29.92 Aligned_cols=94 Identities=14% Similarity=0.097 Sum_probs=41.6
Q ss_pred ccChhHHHhcCchhhHHHHHHHHHHHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHhhccHHHHHHH-HHhcCccCChh
Q 003798 123 KMDFTLLKRCGRKHVYIAVTGVIIPTATSAAVAFLTRKSMDPELAKVSSIGAITTSLAVTSFPVLNPI-LKDLNLLSSEM 201 (794)
Q Consensus 123 e~d~~~l~~~~~~~~~ia~~~~~~p~~l~~~~~~~l~~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~i-L~el~l~~s~~ 201 (794)
+++.+..++..+|-+.+|+..-++-.++.++.++++.. .. -......++++...++.. .+...++ +..+|+-+.-.
T Consensus 369 ~~~~~~~~~~~~ke~~~~~~~g~~~~~~~~~~~~~~~~-~~-~~~~v~~a~~~~~~~a~~-~g~~~p~~~~~~~~DPa~~ 445 (473)
T 2zy9_A 369 DLDLRDWRRVFLKEMGVGLLLGLTLSFLLVGKVYWDGH-PL-LLPVVGVSLVLIVFFANL-VGAMLPFLLRRLGVDPALV 445 (473)
T ss_dssp SSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-TT-SHHHHHHHHHHHHHHHHH-HHTTHHHHHHHHTCCGGGS
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hH-HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCCcccc
Confidence 57777777666666666655333333333333333322 11 000111222222222222 2333333 45566543333
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 003798 202 GRMAIVTAVIGDAIGINIVI 221 (794)
Q Consensus 202 g~l~ls~a~v~D~~~~ill~ 221 (794)
+.-. .+.++|+++++++.
T Consensus 446 s~p~--itt~~D~~g~~~~~ 463 (473)
T 2zy9_A 446 SNPL--VATLSDVTGLLIYL 463 (473)
T ss_dssp CHHH--HHHHHHHHHHHHHH
T ss_pred ccch--HHHHHHHHHHHHHH
Confidence 2322 34578888876653
No 60
>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}
Probab=22.42 E-value=47 Score=34.23 Aligned_cols=70 Identities=10% Similarity=0.116 Sum_probs=40.2
Q ss_pred HHHHHhcCCC-eEEEEEEeeccCCCCCchhhhhhHHHHHHHHHhhcCCCCceEEEEEEecChHHHHHHHHhhhccCcccE
Q 003798 652 YADRMVGNLD-VSLTVIRFLSFNHEGDDEMEKKLDDGLVTWFWVKNESNERVRYREVVVRNGAETVASIQAVNDEAYCDL 730 (794)
Q Consensus 652 ~A~rma~~~~-v~ltvl~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~v~y~e~~v~~~~~~~~~i~~~~~~~~~DL 730 (794)
.++.+.+|+. .++|++-+-+ .--+.-++++.+.....-.++|+ +.++.|+-+ .+++..+. ||+
T Consensus 97 ~~revlk~~~v~~v~~VEID~--------~Vv~~a~~~lp~~~~~~~~dpRv---~v~~~Dg~~---~l~~~~~~--yDv 160 (294)
T 3o4f_A 97 MLREVTRHKNVESITMVEIDA--------GVVSFCRQYLPNHNAGSYDDPRF---KLVIDDGVN---FVNQTSQT--FDV 160 (294)
T ss_dssp HHHHHHTCTTCCEEEEEESCH--------HHHHHHHHHCHHHHTTGGGCTTE---EEEESCTTT---TTSCSSCC--EEE
T ss_pred HHHHHHHcCCcceEEEEcCCH--------HHHHHHHhcCccccccccCCCcE---EEEechHHH---HHhhcccc--CCE
Confidence 3455667765 5788776422 11133344544443332335676 667777754 45566666 999
Q ss_pred EEEeccc
Q 003798 731 WIVGRYQ 737 (794)
Q Consensus 731 ~iVGr~~ 737 (794)
+|+=-..
T Consensus 161 Ii~D~~d 167 (294)
T 3o4f_A 161 IISDCTD 167 (294)
T ss_dssp EEESCCC
T ss_pred EEEeCCC
Confidence 9997653
Done!