BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003799
(794 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1QU2|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
pdb|1QU3|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
pdb|1FFY|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
Length = 917
Score = 216 bits (550), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 110/215 (51%), Positives = 141/215 (65%), Gaps = 4/215 (1%)
Query: 106 YKHTVDLPKTTFGMRANALVREPEIHKLWDDHQVFLRVADKNDG-ENFVLHDGPPYANGN 164
Y+ T+ +PKT F MR +EP+I + WD + + +KN G E F+LHDGPPYANGN
Sbjct: 3 YEKTLLMPKTDFPMRGGLPNKEPQIQEKWDAEDQYHKALEKNKGNETFILHDGPPYANGN 62
Query: 165 LHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSXX 224
LHMGHALNKILKD I RYK +Q + YVPGWD HGLPIE + L D KK ++ +
Sbjct: 63 LHMGHALNKILKDFIVRYKTMQGFYAPYVPGWDTHGLPIE-QALTKKGVDRKK-MSTAEF 120
Query: 225 XXXXXXXXXXXXXXQMASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGK 284
Q F+R GV D+N+PY+TL PEYEAAQI +FG+M+ +G IY+GK
Sbjct: 121 REKCKEFALEQIELQKKDFRRLGVRGDFNDPYITLKPEYEAAQIRIFGEMADKGLIYKGK 180
Query: 285 KPVHWSPSSRTALAEAELEYPEGHVSRSIYAVFRM 319
KPV+WSPSS ++LAEAE+EY + S SIY F +
Sbjct: 181 KPVYWSPSSESSLAEAEIEYHDKR-SASIYVAFNV 214
Score = 151 bits (381), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 72/146 (49%), Positives = 99/146 (67%), Gaps = 2/146 (1%)
Query: 418 IKKTLAGSDLENCRYVHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYG 477
++K G +LE HP +R+ +VI GD++TT++GTG VHTAPGHG++DY+ +Y
Sbjct: 284 LEKEYTGKELEWVVAQHPFLDRES-LVINGDHVTTDAGTGCVHTAPGHGEDDYIVGQQYE 342
Query: 478 LPILSPVDDEGKFTEEAGKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTK 537
LP++SP+DD+G FTEE G+F G+ N AV L E+ +L+ + H YP+DWRTK
Sbjct: 343 LPVISPIDDKGVFTEEGGQFEGM-FYDKANKAVTDLLTEKGALLKLDFITHSYPHDWRTK 401
Query: 538 KPTIFRATEQWFASVEGFRQAAMDAI 563
KP IFRAT QWFAS+ RQ +DAI
Sbjct: 402 KPVIFRATPQWFASISKVRQDILDAI 427
Score = 136 bits (343), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 82/199 (41%), Positives = 111/199 (55%), Gaps = 5/199 (2%)
Query: 569 VPPQEAPGYGADVLRLWVSSVDYTGDVMIGPQVLRQMSDIYRKLRGTLRYLLGNLHDWRV 628
VP Q GAD+ RLWVSS DY DV I ++L+Q SD YRK+R TLR++LGN++D+
Sbjct: 605 VPDQVVKQKGADIARLWVSSTDYLADVRISDEILKQTSDDYRKIRNTLRFMLGNINDFNP 664
Query: 629 G-NSISYDDLPMIDQYALFQLENIVKNIRESYESYXXXXXXXXXXXXXXVDLSNFYFDVA 687
+SI +L +D+Y L +L + +YE++ V+LSNFY D
Sbjct: 665 DTDSIPESELLEVDRYLLNRLREFTASTINNYENFDYLNIYQEVQNFINVELSNFYLDYG 724
Query: 688 KDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAAE 747
KD LY S RRS QTVL L+ + +++APIL H AE+VW + P E A+
Sbjct: 725 KDILYIEQRDSHIRRSMQTVLYQILVDMTKLLAPILVHTAEEVWSHTPHVKE-ESVHLAD 783
Query: 748 F--VFESKWPVLDEKWRTF 764
V E +LD KWRTF
Sbjct: 784 MPKVVEVDQALLD-KWRTF 801
>pdb|1JZQ|A Chain A, Isoleucyl-Trna Synthetase Complexed With Isoleucyl-
Adenylate Analogue
pdb|1JZS|A Chain A, Isoleucyl-trna Synthetase Complexed With Mupirocin
pdb|1ILE|A Chain A, Isoleucyl-Trna Synthetase
Length = 821
Score = 166 bits (419), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 138/469 (29%), Positives = 197/469 (42%), Gaps = 64/469 (13%)
Query: 127 EPEIHKLWDDHQVFLR-VADKNDGENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLL 185
E E+ W ++F + V ++ G + +++GPP ANG H+GHA + KD+ RYK +
Sbjct: 14 EEEVLAFWKREKIFQKSVENRKGGPRYTVYEGPPTANGLPHVGHAQARSYKDLFPRYKTM 73
Query: 186 QNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSXXXXXXXXXXXXXXXXQM---AS 242
+ Y GWD HGLP+EL+V + L +K+++ + A
Sbjct: 74 RGYYAPRRAGWDTHGLPVELEVEKKLGLKSKREIEAYGIERFNQACRESVFTYEKEWEAF 133
Query: 243 FKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALA--EA 300
+R W D + Y TL+P Y + + +G +YR K V + P T L+ E
Sbjct: 134 TERIAYWVDLEDAYATLEPTYIESIWWSLKNLFDRGLLYRDHKVVPYCPRCGTPLSSHEV 193
Query: 301 ELEYPEGHVSRSIYAVFRMVSAPPSTSGLLNEFLPDLGLXXXXXXXXXXXXXXXXXXXXK 360
L Y E S+Y F + P GL
Sbjct: 194 ALGYKEIQ-DPSVYVRFPLKE--PKKLGL------------------------------- 219
Query: 361 LQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFIIVA---SDLVPTLEAKWGTKLV 417
E SLL + + PGNV + A D LE G KL+
Sbjct: 220 ------EKASLLIWTT----TPWTLPGNVAAAVHPEYTYAAFQVGDEALILEEGLGRKLL 269
Query: 418 -----IKKTLAGSDLENCRYVHPVDN--RQCPVVIGGDYITTESGTGLVHTAPGHGQEDY 470
+ KT G LE Y P + V+ DY++ E GTG+VH AP G ED
Sbjct: 270 GEGTQVLKTFPGKALEGLPYTPPYPQALEKGYFVVLADYVSQEDGTGIVHQAPAFGAEDL 329
Query: 471 VTSLKYGLPILSPVDDEGKFTEEAGKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKY 530
T+ YGLP+L VD+EGK E F GL + N A+++ L + L EE Y H Y
Sbjct: 330 ETARVYGLPLLKTVDEEGKLLVEP--FKGL-YFREANRAILRDLRGRGLLFKEESYLHSY 386
Query: 531 PYDWRTKKPTIFRATEQWFASVEGFRQAAMDAIGQVKWVPPQEAPG-YG 578
P+ WR P ++ ATE WF F+ + ++ WVPP G YG
Sbjct: 387 PHCWRCSTPLMYYATESWFIKNTLFKDELIRNNQEIHWVPPHIKEGRYG 435
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 83/186 (44%), Gaps = 8/186 (4%)
Query: 577 YGADVLRLWV-SSVDYTGDVMIGPQVLRQ-MSDIYRKLRGTLRYLL--GNLHDWRVGNSI 632
+GAD LR ++ S D GP ++R+ + D + L + + NL + N
Sbjct: 609 FGADALRWYIYVSAPPEADRRFGPNLVRETVRDYFLTLWNVYSFFVTYANLDRPDLKNPP 668
Query: 633 SYDDLPMIDQYALFQLENIVKNIRESYESYXXXXXXXXXXXXXXVDLSNFYFDVAKDRLY 692
+ P +D++ L +++++++ + E+ E+Y DLS +Y + R +
Sbjct: 669 PPEKRPEMDRWLLARMQDLIQRVTEALEAYDPTTSARALRDFVVEDLSQWYVRRNRRRFW 728
Query: 693 TGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAAEFVFES 752
+ R + L L+ + + AP P LAE +WQNL + LE A E V +
Sbjct: 729 KN-EDALDREAAYATLYEALVLVATLAAPFTPFLAEVLWQNLVRSVRLE---AKESVHLA 784
Query: 753 KWPVLD 758
WP D
Sbjct: 785 DWPEAD 790
>pdb|1GAX|A Chain A, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1GAX|B Chain B, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1IVS|A Chain A, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1IVS|B Chain B, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1IYW|A Chain A, Preliminary Structure Of Thermus Thermophilus Ligand-Free
Valyl-Trna Synthetase
pdb|1IYW|B Chain B, Preliminary Structure Of Thermus Thermophilus Ligand-Free
Valyl-Trna Synthetase
Length = 862
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 79/164 (48%), Gaps = 3/164 (1%)
Query: 143 VADKNDGEN-FVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGL 201
VA+ G+ FV+ PP G+LHMGHAL+ L+D + RYK ++ ++ ++PG D G+
Sbjct: 26 VANPKSGKPPFVIFMPPPNVTGSLHMGHALDNSLQDALIRYKRMRGFEAVWLPGTDHAGI 85
Query: 202 PIELKVLQSLDEDAK--KDLTPSXXXXXXXXXXXXXXXXQMASFKRYGVWADWNNPYLTL 259
++ V + L ++ K DL + KR G ADW+ T+
Sbjct: 86 ATQVVVERLLLKEGKTRHDLGREKFLERVWQWKEESGGTILKQLKRLGASADWSREAFTM 145
Query: 260 DPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAEAELE 303
D + A F + +G YR + V+W P T L++ E+E
Sbjct: 146 DEKRSRAVRYAFSRYYHEGLAYRAPRLVNWCPRCETTLSDLEVE 189
Score = 37.0 bits (84), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 61/154 (39%), Gaps = 12/154 (7%)
Query: 428 ENCRYVHPVDNR-QCPV------VIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPI 480
E+ RY H + R + P+ ++ + + GTG + P H DY ++GL
Sbjct: 231 EDERYRHLLGKRARIPLTEVWIPILADPAVEKDFGTGALKVTPAHDPLDYEIGERHGLKP 290
Query: 481 LSPVDDEGKFTEE--AGKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTKK 538
+S ++ EG+ E GLD + V+ E L+ EE Y R
Sbjct: 291 VSVINLEGRMEGERVPEALRGLDRF-EARRKAVELFREAGHLVKEEDYTIALATCSRCGT 349
Query: 539 PTIFRATEQWFASVEGFRQAAMDAI--GQVKWVP 570
P + QW+ + + + + G + +VP
Sbjct: 350 PIEYAIFPQWWLRMRPLAEEVLKGLRRGDIAFVP 383
>pdb|1WK8|A Chain A, Isoleucyl-Trna Synthetase Editing Domain Complexed With
The Pre-Transfer Editing Substrate Analogue, Val-Ams
pdb|1WK8|B Chain B, Isoleucyl-Trna Synthetase Editing Domain Complexed With
The Pre-Transfer Editing Substrate Analogue, Val-Ams
Length = 194
Score = 76.3 bits (186), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 57/157 (36%), Positives = 74/157 (47%), Gaps = 13/157 (8%)
Query: 386 PGNVLKDQKKVFIIVA---SDLVPTLEAKWGTKLV-----IKKTLAGSDLENCRYVHPVD 437
PGNV + A D LE G KL+ + KT G LE Y P
Sbjct: 41 PGNVAAAVHPEYTYAAFQVGDEALILEEGLGRKLLGEGTPVLKTFPGKALEGLPYTPPYP 100
Query: 438 N--RQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPILSPVDDEGKFTEEAG 495
+ V+ DY++ E GTG+VH AP G ED T+ YGLP+L VD+EGK E
Sbjct: 101 QALEKGYFVVLADYVSQEDGTGIVHQAPAFGAEDLETARVYGLPLLKTVDEEGKLLVEP- 159
Query: 496 KFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPY 532
F GL + N A+++ L + L EE Y H YP+
Sbjct: 160 -FKGL-YFREANRAILRDLRGRGLLFKEESYLHSYPH 194
>pdb|2V0C|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Sulphamoyl Analogue Of Leucyl-Adenylate In The
Synthetic Site And An Adduct Of Amp With 5-Fluoro-1,3-
Dihydro-1-Hydroxy-2,1-Benzoxaborole (An2690) In The
Editing Site
Length = 878
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 84/178 (47%), Gaps = 18/178 (10%)
Query: 127 EPEIHKLWDDHQVFLRVAD--KNDGENFVLHDGPPYANGNLHMGHALNKILKDIINRYKL 184
E + + W++ + F++ D G+ +VL P Y +G+LHMGH N + D++ R++
Sbjct: 10 EAKWQRFWEE-KGFMKAKDLPGGRGKQYVLVMFP-YPSGDLHMGHLKNYTMGDVLARFRR 67
Query: 185 LQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSXXXXXXXXXXXXXXXXQMASFK 244
+Q Y+V + GWD GLP E L+ KD T + S +
Sbjct: 68 MQGYEVLHPMGWDAFGLPAENAALKFGVH--PKDWTYANIRQAKE------------SLR 113
Query: 245 RYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAEAEL 302
G+ DW+ T +PEY +F +M +G YR K V+W P +T LA ++
Sbjct: 114 LMGILYDWDREVTTCEPEYYRWNQWIFLKMWEKGLAYRAKGLVNWCPKCQTVLANEQV 171
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 75/204 (36%), Gaps = 46/204 (22%)
Query: 581 VLRLW---VSSVDYTGDVMIGPQVLRQMSDIYR------------------KLRGTLRYL 619
L LW V S VM+GP V Q +DI R ++G R+L
Sbjct: 629 TLHLWKPAVMSKSKGNGVMVGPFVKEQGADIARITILFAAPPENEMVWTEEGVQGAWRFL 688
Query: 620 LGNLHDWRVGNSISYDDLPMIDQYALFQLENIVKNIRESYESYXXXXXXXXXXXXXXVDL 679
R+ ++ D +++ +FQ E + RE Y DL
Sbjct: 689 N------RIYRRVAEDREALLETSGVFQAEALEGKDRELYGKLHETLKKVTE------DL 736
Query: 680 SNFYFDVAKDRLYTGGTTSFTRRSCQTVLSAHLLSI---VRVIAPILPHLAEDVWQNLPF 736
F+ A L + R + V + +I ++++ P PHLAE++W
Sbjct: 737 EALRFNTAIAALMEFLNALYEYRKDRPVTPVYRTAIRYYLQMLFPFAPHLAEELWHWF-- 794
Query: 737 AYTLEDGSAAEFVFESKWPVLDEK 760
+ +FE+ WP LDEK
Sbjct: 795 --------WPDSLFEAGWPELDEK 810
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 16/99 (16%)
Query: 433 VHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPILSPVDDEGKFTE 492
++P + P+ DY+ GTG + P H Q DY + K+GLPI ++ G+
Sbjct: 312 LNPATGERIPIWTA-DYVLFGYGTGAIMAVPAHDQRDYEFARKFGLPIKKVIERPGEPLP 370
Query: 493 E--------------AGKFSGLDVLGDGNVAVVKYLDEQ 517
E +G F G + +G V+ +L+E+
Sbjct: 371 EPLERAYEEPGIMVNSGPFDGTES-EEGKRKVIAWLEEK 408
>pdb|1OBH|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Pre-Transfer Editing Substrate Analogue In Both
Synthetic Active Site And Editing Site
pdb|2BTE|A Chain A, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
With A Trnaleu Transcript In The Post-Editing
Conformation And A Post-Transfer Editing Substrate
Analogue
pdb|2BTE|D Chain D, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
With A Trnaleu Transcript In The Post-Editing
Conformation And A Post-Transfer Editing Substrate
Analogue
pdb|2BYT|A Chain A, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
A Trnaleu Transcript In The Post-Editing Conformation
pdb|2BYT|D Chain D, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
A Trnaleu Transcript In The Post-Editing Conformation
pdb|1H3N|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Sulphamoyl Analogue Of Leucyl-Adenylate
pdb|1OBC|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Post-Transfer Editing Substrate Analogue
pdb|2V0G|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Trna(Leu) Transcript With 5-Fluoro-1,3-Dihydro-1-
Hydroxy-2,1-Benzoxaborole (An2690) Forming An Adduct To
The Ribose Of Adenosine-76 In The Enzyme Editing Site.
pdb|2V0G|D Chain D, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Trna(Leu) Transcript With 5-Fluoro-1,3-Dihydro-1-
Hydroxy-2,1-Benzoxaborole (An2690) Forming An Adduct To
The Ribose Of Adenosine-76 In The Enzyme Editing Site
Length = 878
Score = 75.1 bits (183), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 84/178 (47%), Gaps = 18/178 (10%)
Query: 127 EPEIHKLWDDHQVFLRVAD--KNDGENFVLHDGPPYANGNLHMGHALNKILKDIINRYKL 184
E + + W++ + F++ D G+ +VL P Y +G+LHMGH N + D++ R++
Sbjct: 10 EAKWQRFWEE-KGFMKAKDLPGGRGKQYVLVMFP-YPSGDLHMGHLKNYTMGDVLARFRR 67
Query: 185 LQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSXXXXXXXXXXXXXXXXQMASFK 244
+Q Y+V + GWD GLP E L+ KD T + S +
Sbjct: 68 MQGYEVLHPMGWDAFGLPAENAALKFGVH--PKDWTYANIRQAKE------------SLR 113
Query: 245 RYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAEAEL 302
G+ DW+ T +PEY +F +M +G YR K V+W P +T LA ++
Sbjct: 114 LMGILYDWDREVTTCEPEYYRWNQWIFLKMWEKGLAYRAKGLVNWCPKCQTVLANEQV 171
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 75/204 (36%), Gaps = 46/204 (22%)
Query: 581 VLRLW---VSSVDYTGDVMIGPQVLRQMSDIYR------------------KLRGTLRYL 619
L LW V S VM+GP V Q +DI R ++G R+L
Sbjct: 629 TLHLWKPAVMSKSKGNGVMVGPFVKEQGADIARITILFAAPPENEMVWTEEGVQGAWRFL 688
Query: 620 LGNLHDWRVGNSISYDDLPMIDQYALFQLENIVKNIRESYESYXXXXXXXXXXXXXXVDL 679
R+ ++ D +++ +FQ E + RE Y DL
Sbjct: 689 N------RIYRRVAEDREALLETSGVFQAEALEGKDRELYGKLHETLKKVTE------DL 736
Query: 680 SNFYFDVAKDRLYTGGTTSFTRRSCQTVLSAHLLSI---VRVIAPILPHLAEDVWQNLPF 736
F+ A L + R + V + +I ++++ P PHLAE++W
Sbjct: 737 EALRFNTAIAALMEFLNALYEYRKDRPVTPVYRTAIRYYLQMLFPFAPHLAEELWHWF-- 794
Query: 737 AYTLEDGSAAEFVFESKWPVLDEK 760
+ +FE+ WP LDEK
Sbjct: 795 --------WPDSLFEAGWPELDEK 810
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 16/99 (16%)
Query: 433 VHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPILSPVDDEGKFTE 492
++P + P+ DY+ GTG + P H Q DY + K+GLPI ++ G+
Sbjct: 312 LNPATGERIPIWTA-DYVLFGYGTGAIMAVPAHDQRDYEFARKFGLPIKKVIERPGEPLP 370
Query: 493 E--------------AGKFSGLDVLGDGNVAVVKYLDEQ 517
E +G F G + +G V+ +L+E+
Sbjct: 371 EPLERAYEEPGIMVNSGPFDGTES-EEGKRKVIAWLEEK 408
>pdb|4AQ7|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And Leucyl-Adenylate Analogue In The
Aminoacylation Conformation
pdb|4AQ7|D Chain D, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And Leucyl-Adenylate Analogue In The
Aminoacylation Conformation
pdb|4ARC|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And Leucine In The Editing Conformation
pdb|4ARI|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And The Benzoxaborole An2679 In The Editing
Conformation
pdb|4AS1|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And The Benzoxaborole An2679 In The Editing
Conformation
pdb|3ZGZ|A Chain A, Ternary Complex Of E. Coli Leucyl-trna Synthetase,
Trna(leu) And Toxic Moiety From Agrocin 84 (tm84) In
Aminoacylation- Like Conformation
pdb|3ZGZ|D Chain D, Ternary Complex Of E. Coli Leucyl-trna Synthetase,
Trna(leu) And Toxic Moiety From Agrocin 84 (tm84) In
Aminoacylation- Like Conformation
Length = 880
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 73/176 (41%), Gaps = 15/176 (8%)
Query: 127 EPEIHKLWDDHQVFLRVADKNDGENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQ 186
E ++ WD+ + F V + E + PY +G LHMGH N + D+I RY+ +
Sbjct: 31 ESKVQLHWDEKRTF-EVTEDESKEKYYCLSMLPYPSGRLHMGHVRNYTIGDVIARYQRML 89
Query: 187 NYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSXXXXXXXXXXXXXXXXQMASFKRY 246
V GWD GLP E + K + P+ K
Sbjct: 90 GKNVLQPIGWDAFGLPAEGAAV-------KNNTAPAPWTYDNIAYMKN-------QLKML 135
Query: 247 GVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAEAEL 302
G DW+ T PEY + + F ++ +G +Y+ V+W P+ +T LA ++
Sbjct: 136 GFGYDWSRELATCTPEYYRWEQKFFTELYKKGLVYKKTSAVNWCPNDQTVLANEQV 191
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 43/85 (50%), Gaps = 15/85 (17%)
Query: 431 RYVHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGL---PILSPVD-D 486
+ VHP+ + PV +++ E GTG V PGH Q DY + KYGL P++ D
Sbjct: 328 KAVHPLTGEEIPV-WAANFVLMEYGTGAVMAVPGHDQRDYEFASKYGLNIKPVILAADGS 386
Query: 487 EGKFTEEA----------GKFSGLD 501
E +++A G+F+GLD
Sbjct: 387 EPDLSQQALTEKGVLFNSGEFNGLD 411
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 9/56 (16%)
Query: 705 QTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAAEFVFESKWPVLDEK 760
+ ++ LL++VR++ P PH+ +WQ L +++ + WPV DEK
Sbjct: 767 RALMQEALLAVVRMLNPFTPHICFTLWQELKGEGDIDN---------APWPVADEK 813
>pdb|1WNY|A Chain A, Isoleucyl-Trna Synthetase Editing Domain
pdb|1WNY|B Chain B, Isoleucyl-Trna Synthetase Editing Domain
pdb|1WNZ|A Chain A, Isoleucyl-Trna Synthetase Editing Domain Complexed With
The Post-Transfer Editing Substrate Analogue, Val-2aa
Length = 186
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 71/153 (46%), Gaps = 13/153 (8%)
Query: 386 PGNVLKDQKKVFIIVA---SDLVPTLEAKWGTKLV-----IKKTLAGSDLENCRYVHPVD 437
PGNV + A D LE G KL+ + KT G LE Y P
Sbjct: 36 PGNVAAAVHPEYTYAAFQVGDEALILEEGLGRKLLGEGTPVLKTFPGKALEGLPYTPPYP 95
Query: 438 N--RQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPILSPVDDEGKFTEEAG 495
+ V+ DY++ E GTG+VH AP G ED T+ YGLP+L VD+EGK E
Sbjct: 96 QALEKGYFVVLADYVSQEDGTGIVHQAPAFGAEDLETARVYGLPLLKTVDEEGKLLVEP- 154
Query: 496 KFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEH 528
F GL + N A+++ L + L EE Y H
Sbjct: 155 -FKGL-YFREANRAILRDLRGRGLLFKEESYLH 185
>pdb|1UE0|A Chain A, Isoleucyl-Trna Synthetase Editing Domain Complexed With L-
Valine
pdb|1UE0|B Chain B, Isoleucyl-Trna Synthetase Editing Domain Complexed With L-
Valine
Length = 182
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 69/149 (46%), Gaps = 13/149 (8%)
Query: 386 PGNVLKDQKKVFIIVA---SDLVPTLEAKWGTKLV-----IKKTLAGSDLENCRYVHPVD 437
PGNV + A D LE G KL+ + KT G LE Y P
Sbjct: 36 PGNVAAAVHPEYTYAAFQVGDEALILEEGLGRKLLGEGTQVLKTFPGKALEGLPYTPPYP 95
Query: 438 N--RQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPILSPVDDEGKFTEEAG 495
+ V+ DY++ E GTG+VH AP G ED T+ YGLP+L VD+EGK E
Sbjct: 96 QALEKGYFVVLADYVSQEDGTGIVHQAPAFGAEDLETARVYGLPLLKTVDEEGKLLVEP- 154
Query: 496 KFSGLDVLGDGNVAVVKYLDEQMSLIMEE 524
F GL + N A+++ L + L EE
Sbjct: 155 -FKGL-YFREANRAILRDLRGRGFLFKEE 181
>pdb|1UDZ|A Chain A, Isoleucyl-Trna Synthetase Editing Domain
pdb|1UDZ|B Chain B, Isoleucyl-Trna Synthetase Editing Domain
Length = 182
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 69/149 (46%), Gaps = 13/149 (8%)
Query: 386 PGNVLKDQKKVFIIVA---SDLVPTLEAKWGTKLV-----IKKTLAGSDLENCRYVHPVD 437
PGNV + A D LE G KL+ + KT G LE Y P
Sbjct: 36 PGNVAAAVHPEYTYAAFQVGDEALILEEGLGRKLLGEGTPVLKTFPGKALEGLPYTPPYP 95
Query: 438 N--RQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPILSPVDDEGKFTEEAG 495
+ V+ DY++ E GTG+VH AP G ED T+ YGLP+L VD+EGK E
Sbjct: 96 QALEKGYFVVLADYVSQEDGTGIVHQAPAFGAEDLETARVYGLPLLKTVDEEGKLLVEP- 154
Query: 496 KFSGLDVLGDGNVAVVKYLDEQMSLIMEE 524
F GL + N A+++ L + L EE
Sbjct: 155 -FKGL-YFREANRAILRDLRGRGFLFKEE 181
>pdb|1WKB|A Chain A, Crystal Structure Of Leucyl-Trna Synthetase From The
Archaeon Pyrococcus Horikoshii Reveals A Novel Editing
Domain Orientation
Length = 810
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 79/189 (41%), Gaps = 13/189 (6%)
Query: 127 EPEIHKLWDDHQVFL-RVADKNDGENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLL 185
E + K W + ++F + DK + F + PY +G+LH+GHA + D+I R+K +
Sbjct: 10 EEKWQKRWLEAKIFEPNIRDKPKEKKFYITVAFPYLSGHLHVGHARTYTIPDVIARFKRM 69
Query: 186 QNYKVRYVPGWDCHGLPIELKVLQSLDEDAK-----KDL--TPSXXXXXXXXXXXXXXXX 238
Q Y V + W G PI + + D K +D+ P
Sbjct: 70 QGYNVLFPMAWHITGSPIVGIAERIKNRDPKTIWIYRDVYKVPEEILWTFEDPINIVKYF 129
Query: 239 QMA---SFKRYGVWADWNNPYLT--LDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSS 293
A +F R G DW+ + T L P + F ++ +GYI +G V W P
Sbjct: 130 MKAAKETFIRAGFSVDWSREFYTTSLFPPFSKFIEWQFWKLKEKGYIVKGAHRVRWDPVV 189
Query: 294 RTALAEAEL 302
T L + +L
Sbjct: 190 GTPLGDHDL 198
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 58/252 (23%), Positives = 92/252 (36%), Gaps = 75/252 (29%)
Query: 522 MEEPYEHKYPYDWRT---------------KKPTIFRATEQW--------FASVEGFRQA 558
M+E +E+ YP DWR IFR E W F ++EG + +
Sbjct: 594 MKEEFEYWYPLDWRCSGKDLIPNHLTFFIFNHVAIFRE-EHWPKGIAVNGFGTLEGQKMS 652
Query: 559 A--------MDAIGQVKWVPPQEAPGYGADVLRLWVSSV-DYTGDVMIGPQVLRQMSDIY 609
+DAI + GADV+RL++ S+ ++ D D
Sbjct: 653 KSKGNVLNFIDAIEE-----------NGADVVRLYIMSLAEHDSDF-----------DWR 690
Query: 610 RKLRGTLRY-------LLGNLHDWRVGNSISYDDLPMIDQYALFQLENIVKNIRESYESY 662
RK G LR L+ ++ V ++ D ID++ L +L +K + E +
Sbjct: 691 RKEVGKLRKQIERFYELISQFAEYEVKGNVELKD---IDRWMLHRLNKAIKETTNALEEF 747
Query: 663 XXXXXXXXXXXXXXVDLSNFYFDVAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPI 722
DL R Y T + + VL VR++AP
Sbjct: 748 RTRTAVQWAFYSIMNDL----------RWYLRRTEGRDDEAKRYVLRTLADVWVRLMAPF 797
Query: 723 LPHLAEDVWQNL 734
PH+ E++W+ L
Sbjct: 798 TPHICEELWEKL 809
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 44/89 (49%), Gaps = 4/89 (4%)
Query: 431 RYV-HPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVT--SLKYGLPILSPVDDE 487
+YV +PV + +++ +++ ++ TG+V + P H D+V LK IL D +
Sbjct: 294 KYVRNPVSGDEV-IILPAEFVDPDNATGVVMSVPAHAPFDHVALEDLKRETEILEKYDID 352
Query: 488 GKFTEEAGKFSGLDVLGDGNVAVVKYLDE 516
+ E S + + G G+ V+ +++
Sbjct: 353 PRIVENITYISLIKLEGYGDFPAVEEVNK 381
>pdb|1WZ2|A Chain A, The Crystal Structure Of Leucyl-Trna Synthetase And
Trna(Leucine) Complex
pdb|1WZ2|B Chain B, The Crystal Structure Of Leucyl-Trna Synthetase And
Trna(Leucine) Complex
Length = 967
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 79/189 (41%), Gaps = 13/189 (6%)
Query: 127 EPEIHKLWDDHQVFL-RVADKNDGENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLL 185
E + K W + ++F + DK + F + PY +G+LH+GHA + D+I R+K +
Sbjct: 10 EEKWQKRWLEAKIFEPNIRDKPKEKKFYITVAFPYLSGHLHVGHARTYTIPDVIARFKRM 69
Query: 186 QNYKVRYVPGWDCHGLPIELKVLQSLDEDAK-----KDL--TPSXXXXXXXXXXXXXXXX 238
Q Y V + W G PI + + D K +D+ P
Sbjct: 70 QGYNVLFPMAWHITGSPIVGIAERIKNRDPKTIWIYRDVYKVPEEILWTFEDPINIVKYF 129
Query: 239 QMA---SFKRYGVWADWNNPYLT--LDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSS 293
A +F R G DW+ + T L P + F ++ +GYI +G V W P
Sbjct: 130 MKAAKETFIRAGFSVDWSREFYTTSLFPPFSKFIEWQFWKLKEKGYIVKGAHRVRWDPVV 189
Query: 294 RTALAEAEL 302
T L + +L
Sbjct: 190 GTPLGDHDL 198
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 65/279 (23%), Positives = 101/279 (36%), Gaps = 84/279 (30%)
Query: 522 MEEPYEHKYPYDWRTKKP---------------TIFRATEQW--------FASVEGFRQA 558
M+E +E+ YP DWR IFR E W F ++EG + +
Sbjct: 594 MKEEFEYWYPLDWRCSGKDLIPNHLTFFIFNHVAIFR-EEHWPKGIAVNGFGTLEGQKMS 652
Query: 559 A--------MDAIGQVKWVPPQEAPGYGADVLRLWVSSV-DYTGDVMIGPQVLRQMSDIY 609
+DAI + GADV+RL++ S+ ++ D D
Sbjct: 653 KSKGNVLNFIDAIEE-----------NGADVVRLYIMSLAEHDSDF-----------DWR 690
Query: 610 RKLRGTLRY-------LLGNLHDWRVGNSISYDDLPMIDQYALFQLENIVKNIRESYESY 662
RK G LR L+ ++ V ++ D ID++ L +L +K + E +
Sbjct: 691 RKEVGKLRKQIERFYELISQFAEYEVKGNVELKD---IDRWMLHRLNKAIKETTNALEEF 747
Query: 663 XXXXXXXXXXXXXXVDLSNFYFDVAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPI 722
DL R Y T + + VL VR++AP
Sbjct: 748 RTRTAVQWAFYSIMNDL----------RWYLRRTEGRDDEAKRYVLRTLADVWVRLMAPF 797
Query: 723 LPHLAEDVWQNLPFAYTLEDGSAAEFVFESKWPVLDEKW 761
PH+ E++W+ L FV +KWP E+W
Sbjct: 798 TPHICEELWEKL---------GGEGFVSLAKWPEPVEEW 827
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 44/89 (49%), Gaps = 4/89 (4%)
Query: 431 RYV-HPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVT--SLKYGLPILSPVDDE 487
+YV +PV + +++ +++ ++ TG+V + P H D+V LK IL D +
Sbjct: 294 KYVRNPVSGDEV-IILPAEFVDPDNATGVVMSVPAHAPFDHVALEDLKRETEILEKYDID 352
Query: 488 GKFTEEAGKFSGLDVLGDGNVAVVKYLDE 516
+ E S + + G G+ V+ +++
Sbjct: 353 PRIVENITYISLIKLEGYGDFPAVEEVNK 381
>pdb|3H97|A Chain A, Structure Of A Mutant Methionyl-trna Synthetase With
Modified Specificity
pdb|3H99|A Chain A, Structure Of A Mutant Methionyl-Trna Synthetase With
Modified Specificity Complexed With Methionine
pdb|3H9B|A Chain A, Structure Of A Mutant Methionyl-Trna Synthetase With
Modified Specificity Complexed With Azidonorleucine
Length = 560
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 33/51 (64%)
Query: 159 PYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQ 209
PYANG++H+GH L I D+ RY+ ++ ++V ++ D HG PI LK Q
Sbjct: 27 PYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQ 77
>pdb|1QQT|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli
Length = 551
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 33/51 (64%)
Query: 159 PYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQ 209
PYANG++H+GH L I D+ RY+ ++ ++V ++ D HG PI LK Q
Sbjct: 14 PYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQ 64
>pdb|1F4L|A Chain A, Crystal Structure Of The E.Coli Methionyl-Trna Synthetase
Complexed With Methionine
Length = 551
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 33/51 (64%)
Query: 159 PYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQ 209
PYANG++H+GH L I D+ RY+ ++ ++V ++ D HG PI LK Q
Sbjct: 15 PYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQ 65
>pdb|1P7P|A Chain A, Methionyl-trna Synthetase From Escherichia Coli Complexed
With Methionine Phosphonate
pdb|1PFU|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Methionine Phosphinate
pdb|1PFV|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Difluoromethionine
pdb|1PFW|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Trifluoromethionine
pdb|1PFY|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Methionyl Sulphamoyl Adenosine
pdb|1PG0|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Methioninyl Adenylate
pdb|1PG2|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Methionine And Adenosine
Length = 551
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 33/51 (64%)
Query: 159 PYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQ 209
PYANG++H+GH L I D+ RY+ ++ ++V ++ D HG PI LK Q
Sbjct: 14 PYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQ 64
>pdb|3H9C|A Chain A, Structure Of Methionyl-Trna Synthetase: Crystal Form 2
Length = 547
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 33/51 (64%)
Query: 159 PYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQ 209
PYANG++H+GH L I D+ RY+ ++ ++V ++ D HG PI LK Q
Sbjct: 14 PYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQ 64
>pdb|3ZIU|A Chain A, Crystal Structure Of Mycoplasma Mobile Leucyl-trna
Synthetase With Leu-ams In The Active Site
pdb|3ZIU|B Chain B, Crystal Structure Of Mycoplasma Mobile Leucyl-trna
Synthetase With Leu-ams In The Active Site
Length = 637
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 77/191 (40%), Gaps = 27/191 (14%)
Query: 120 RANALVREPEIHKLWD---DHQVFLRVADKNDGENFVLHDGPPYANGN-LHMGHALNKIL 175
R + + EI K W + + +K+ + + L D PY +G+ LH+GH
Sbjct: 4 RGSHMYNHNEIEKKWQTRWEKTKAFKTTNKSKDKFYAL-DMFPYPSGSGLHVGHPEGYTA 62
Query: 176 KDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSXXXXXXXXXXXXX 235
DII+RYK L+ + V + GWD GLP E L S K P
Sbjct: 63 TDIISRYKRLKGFDVLHPIGWDAFGLPAEQYALSS-----GKHPQP-------------F 104
Query: 236 XXXQMASFKR----YGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSP 291
+ +F+R G D+ T DP Y +F Q+ +G + V+W P
Sbjct: 105 TLKNIENFRRQLKSLGFSFDYEKEVNTTDPSYYRWTQWIFKQIYKKGLAEIREVDVNWCP 164
Query: 292 SSRTALAEAEL 302
T LA E+
Sbjct: 165 GLGTVLANEEI 175
>pdb|2X1L|A Chain A, Crystal Structure Of Mycobacterium Smegmatis
Methionyl-Trna Synthetase In Complex With Methionine And
Adenosine
pdb|2X1L|B Chain B, Crystal Structure Of Mycobacterium Smegmatis
Methionyl-Trna Synthetase In Complex With Methionine And
Adenosine
pdb|2X1L|C Chain C, Crystal Structure Of Mycobacterium Smegmatis
Methionyl-Trna Synthetase In Complex With Methionine And
Adenosine
pdb|2X1M|A Chain A, Crystal Structure Of Mycobacterium Smegmatis
Methionyl-Trna Synthetase In Complex With Methionine
Length = 524
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 35/73 (47%), Gaps = 8/73 (10%)
Query: 150 ENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQ 209
E F + Y NG H+GHA I D I R+K L Y VRY+ G D HG Q
Sbjct: 12 EPFYITTAIAYPNGVPHIGHAYEYIATDAIARFKRLDGYDVRYLTGTDVHG--------Q 63
Query: 210 SLDEDAKKDLTPS 222
+ E A K+ P+
Sbjct: 64 KMAETAAKEGIPA 76
>pdb|2AJG|A Chain A, Crystal Structure Of The Editing Domain Of E. Coli Leucyl-
Trna Synthetase
pdb|2AJG|B Chain B, Crystal Structure Of The Editing Domain Of E. Coli Leucyl-
Trna Synthetase
pdb|2AJH|A Chain A, Crystal Structure Of The Editing Domain Of E. Coli Leucyl-
Trna Synthetase Complexes With Methionine
pdb|2AJH|B Chain B, Crystal Structure Of The Editing Domain Of E. Coli Leucyl-
Trna Synthetase Complexes With Methionine
pdb|2AJI|A Chain A, Crystal Structure Of The Editing Domain Of E. Coli Leucyl-
Trna Synthetase Complexes With Isoleucine
pdb|2AJI|B Chain B, Crystal Structure Of The Editing Domain Of E. Coli Leucyl-
Trna Synthetase Complexes With Isoleucine
Length = 196
Score = 47.8 bits (112), Expect = 3e-05, Method: Composition-based stats.
Identities = 29/85 (34%), Positives = 43/85 (50%), Gaps = 15/85 (17%)
Query: 431 RYVHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGL---PILSPVD-D 486
+ VHP+ + PV +++ E GTG V PGH Q DY + KYGL P++ D
Sbjct: 91 KAVHPLTGEEIPV-WAANFVLMEYGTGAVMAVPGHDQRDYEFASKYGLNIKPVILAADGS 149
Query: 487 EGKFTEEA----------GKFSGLD 501
E +++A G+F+GLD
Sbjct: 150 EPDLSQQALTEKGVLFNSGEFNGLD 174
>pdb|3O0A|A Chain A, Crystal Structure Of The Wild Type Cp1 Hydrolitic Domain
From Aquifex Aeolicus Leucyl-Trna
pdb|3O0A|B Chain B, Crystal Structure Of The Wild Type Cp1 Hydrolitic Domain
From Aquifex Aeolicus Leucyl-Trna
Length = 219
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 434 HPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPILSPVDDEGKFTEE 493
+P + + PV +Y+ E GTG + P H Q D+ + KY LPI V EG + E
Sbjct: 115 NPANGEKIPV-WSANYVLYEYGTGAIMCVPAHDQRDWEFAKKYDLPIKVVVKPEGAWDFE 173
Query: 494 AGKFSGLDVL 503
G + G L
Sbjct: 174 KGAYEGKGTL 183
>pdb|3PZ0|A Chain A, The Crystal Structure Of Aaleurs-Cp1
pdb|3PZ0|B Chain B, The Crystal Structure Of Aaleurs-Cp1
pdb|3PZ0|C Chain C, The Crystal Structure Of Aaleurs-Cp1
pdb|3PZ0|D Chain D, The Crystal Structure Of Aaleurs-Cp1
Length = 221
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 434 HPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPILSPVDDEGKFTEE 493
+P + + PV +Y+ E GTG + P H Q D+ + KY LPI V EG + E
Sbjct: 121 NPANGEKIPV-WSANYVLYEYGTGAIMCVPAHDQRDWEFAKKYDLPIKVVVKPEGAWDFE 179
Query: 494 AGKFSGLDVL 503
G + G L
Sbjct: 180 KGAYEGKGTL 189
>pdb|3PZ5|A Chain A, The Crystal Structure Of Aaleurs-Cp1-D20
pdb|3PZ5|B Chain B, The Crystal Structure Of Aaleurs-Cp1-D20
Length = 201
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 434 HPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPILSPVDDEGKFTEE 493
+P + + PV +Y+ E GTG + P H Q D+ + KY LPI V EG + E
Sbjct: 101 NPANGEKIPV-WSANYVLYEYGTGAIMCVPAHDQRDWEFAKKYDLPIKVVVKPEGAWDFE 159
Query: 494 AGKFSGLDVL 503
G + G L
Sbjct: 160 KGAYEGKGTL 169
>pdb|4DLP|A Chain A, Crystal Structure Of Methionyl-Trna Synthetase Metrs From
Brucella Melitensis Bound To Selenomethionine
pdb|4DLP|B Chain B, Crystal Structure Of Methionyl-Trna Synthetase Metrs From
Brucella Melitensis Bound To Selenomethionine
pdb|4DLP|C Chain C, Crystal Structure Of Methionyl-Trna Synthetase Metrs From
Brucella Melitensis Bound To Selenomethionine
Length = 536
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 65/157 (41%), Gaps = 22/157 (14%)
Query: 150 ENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQ 209
E + + Y NG H+GHA I D + R++ L V ++ G D HG +K+LQ
Sbjct: 25 EKYYITTAIAYPNGKPHIGHAYELIATDAMARFQRLNGMDVYFLTGTDEHG----IKMLQ 80
Query: 210 SLDEDAKKDLTPSXXXXXXXXXXXXXXXXQMASFKRYG-VWADWNNPYLTLDPE--YEAA 266
S K+ +TP ++F+R V N+ Y+ E Y+A+
Sbjct: 81 SA---RKEGITPR-----------DLADRNTSAFRRMAEVLNSSNDDYIRTSEERHYKAS 126
Query: 267 QIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAEAELE 303
Q ++ M G IY+G +S E E E
Sbjct: 127 QA-IWQAMVANGDIYKGGYAGWYSVRDEAYYGEEETE 162
>pdb|1RQG|A Chain A, Methionyl-Trna Synthetase From Pyrococcus Abyssi
Length = 722
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 159 PYANGNLHMGHALNKIL-KDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQS 210
PYANG +H GH L DI RY L+ V ++ G D HG PI + L+
Sbjct: 11 PYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALKE 63
>pdb|2CSX|A Chain A, Crystal Structure Of Aquifex Aeolicus Methionyl-Trna
Synthetase Complexed With Trna(Met)
pdb|2CSX|B Chain B, Crystal Structure Of Aquifex Aeolicus Methionyl-Trna
Synthetase Complexed With Trna(Met)
pdb|2CT8|A Chain A, Crystal Structure Of Aquifex Aeolicus Methionyl-Trna
Synthetase Complexed With Trna(Met) And
Methionyl-Adenylate Anologue
pdb|2CT8|B Chain B, Crystal Structure Of Aquifex Aeolicus Methionyl-Trna
Synthetase Complexed With Trna(Met) And
Methionyl-Adenylate Anologue
Length = 497
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 27/47 (57%)
Query: 160 YANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELK 206
Y N H+GHA I D I RY L++Y V ++ G D HGL I+ K
Sbjct: 15 YVNDVPHLGHAYTTIAADTIARYYRLRDYDVFFLTGTDEHGLKIQKK 61
>pdb|2D54|A Chain A, Crystal Structure Of Methionyl Trna Synthetase Y225a
Mutant From Thermus Thermophilus
Length = 502
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 160 YANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAK 216
Y N H+GHA ++ D + R+ L Y+ ++ G D HG + + Q+ ED K
Sbjct: 13 YVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETV-YRAAQAAGEDPK 68
>pdb|1WOY|A Chain A, Crystal Structure Of Methionyl Trna Synthetase Y225f
Mutant From Thermus Thermophilus
pdb|2D5B|A Chain A, Crystal Structure Of Thermus Thermophilus Methionyl Trna
Synthetase Y225f Mutant Obtained In The Presence Of
Peg6000
Length = 500
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 160 YANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAK 216
Y N H+GHA ++ D + R+ L Y+ ++ G D HG + + Q+ ED K
Sbjct: 13 YVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETV-YRAAQAAGEDPK 68
>pdb|1A8H|A Chain A, Methionyl-Trna Synthetase From Thermus Thermophilus
Length = 500
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 160 YANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAK 216
Y N H+GHA ++ D + R+ L Y+ ++ G D HG + + Q+ ED K
Sbjct: 13 YVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETV-YRAAQAAGEDPK 68
>pdb|3TUN|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1356
pdb|3TUN|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1356
pdb|4EG4|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1289
pdb|4EG4|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1289
pdb|4EG7|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1331
pdb|4EG7|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1331
pdb|4EGA|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1320
pdb|4EGA|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1320
pdb|3U1Z|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1433
pdb|3U1Z|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1433
Length = 542
Score = 37.0 bits (84), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 56/128 (43%), Gaps = 22/128 (17%)
Query: 160 YANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAK-KD 218
Y N H+GH + ++ D+I RY ++ +V + G D HG Q + E AK K
Sbjct: 19 YVNAAPHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHG--------QKVAEAAKQKQ 70
Query: 219 LTPSXXXXXXXXXXXXXXXXQMASFKRYGVWADWNNPYL--TLDPEYEAAQIEVFGQMSL 276
++P FK+ D++ Y T + +++A E++ ++
Sbjct: 71 VSPYDFTTAVA-----------GEFKKXFEQMDYSIDYFIRTTNEQHKAVVKELWTKLEQ 119
Query: 277 QGYIYRGK 284
+G IY G+
Sbjct: 120 KGDIYLGR 127
>pdb|4EG5|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1312
pdb|4EG5|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1312
Length = 542
Score = 37.0 bits (84), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 56/128 (43%), Gaps = 22/128 (17%)
Query: 160 YANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAK-KD 218
Y N H+GH + ++ D+I RY ++ +V + G D HG Q + E AK K
Sbjct: 19 YVNAAPHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHG--------QKVAEAAKQKQ 70
Query: 219 LTPSXXXXXXXXXXXXXXXXQMASFKRYGVWADWNNPYL--TLDPEYEAAQIEVFGQMSL 276
++P FK+ D++ Y T + +++A E++ ++
Sbjct: 71 VSPYDFTTAVA-----------GEFKKCFEQMDYSIDYFIRTTNEQHKAVVKELWTKLEQ 119
Query: 277 QGYIYRGK 284
+G IY G+
Sbjct: 120 KGDIYLGR 127
>pdb|4EG1|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Substrate Methionine
pdb|4EG1|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Substrate Methionine
pdb|4EG3|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Product Methionyl-Adenylate
pdb|4EG3|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Product Methionyl-Adenylate
pdb|4EG6|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1325
pdb|4EG6|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1325
pdb|4EG8|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Compound Chem 89
pdb|4EG8|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Compound Chem 89
pdb|3U1E|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1387
pdb|3U1E|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1387
pdb|3U1F|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1392
pdb|3U1F|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1392
pdb|3U1G|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1415
pdb|3U1G|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1415
pdb|3U20|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1444
pdb|3U20|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1444
Length = 542
Score = 37.0 bits (84), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 56/128 (43%), Gaps = 22/128 (17%)
Query: 160 YANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAK-KD 218
Y N H+GH + ++ D+I RY ++ +V + G D HG Q + E AK K
Sbjct: 19 YVNAAPHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHG--------QKVAEAAKQKQ 70
Query: 219 LTPSXXXXXXXXXXXXXXXXQMASFKRYGVWADWNNPYL--TLDPEYEAAQIEVFGQMSL 276
++P FK+ D++ Y T + +++A E++ ++
Sbjct: 71 VSPYDFTTAVA-----------GEFKKCFEQMDYSIDYFIRTTNEQHKAVVKELWTKLEQ 119
Query: 277 QGYIYRGK 284
+G IY G+
Sbjct: 120 KGDIYLGR 127
>pdb|3KG2|A Chain A, Ampa Subtype Ionotropic Glutamate Receptor In Complex With
Competitive Antagonist Zk 200775
pdb|3KG2|B Chain B, Ampa Subtype Ionotropic Glutamate Receptor In Complex With
Competitive Antagonist Zk 200775
pdb|3KG2|C Chain C, Ampa Subtype Ionotropic Glutamate Receptor In Complex With
Competitive Antagonist Zk 200775
pdb|3KG2|D Chain D, Ampa Subtype Ionotropic Glutamate Receptor In Complex With
Competitive Antagonist Zk 200775
Length = 823
Score = 36.2 bits (82), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 703 SCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAY-TLEDGSAAEFVFESKWPVLDEKW 761
S T A L++ R+++PI AED+ + AY TL+ GS EF SK V D+ W
Sbjct: 605 SSYTANLAAFLTVERMVSPI--ESAEDLSKQTEIAYGTLDSGSTKEFFRRSKIAVFDKMW 662
>pdb|3KFL|A Chain A, Leishmania Major Methionyl-Trna Synthetase In Complex With
Methionyladenylate And Pyrophosphate
Length = 564
Score = 35.8 bits (81), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 30/140 (21%), Positives = 62/140 (44%), Gaps = 20/140 (14%)
Query: 160 YANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDL 219
Y N + H+GH + ++ D++ RY ++ +V + G D HG + + AK+ +
Sbjct: 36 YVNASPHIGHVYSTLIVDVLGRYHRVKGEEVFVMTGTDEHGQKVA-------EAAAKQGV 88
Query: 220 TPSXXXXXXXXXXXXXXXXQMASFKRYGVWADWNNPYL--TLDPEYEAAQIEVFGQMSLQ 277
+P + FK+ +++ Y T +P +E +++ +++ +
Sbjct: 89 SPMDFTTSVS-----------SEFKQCFQEMNYDMNYFIRTTNPTHEKLVQDIWKKLAAK 137
Query: 278 GYIYRGKKPVHWSPSSRTAL 297
G IY GK +S S + L
Sbjct: 138 GDIYLGKYEGWYSVSDESFL 157
>pdb|2GFE|A Chain A, Crystal Structure Of The Glur2 A476e S673d Ligand Binding
Core Mutant At 1.54 Angstroms Resolution
pdb|2GFE|B Chain B, Crystal Structure Of The Glur2 A476e S673d Ligand Binding
Core Mutant At 1.54 Angstroms Resolution
pdb|2GFE|C Chain C, Crystal Structure Of The Glur2 A476e S673d Ligand Binding
Core Mutant At 1.54 Angstroms Resolution
Length = 262
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 727 AEDVWQNLPFAY-TLEDGSAAEFVFESKWPVLDEKW 761
AED+ + AY TL+DGS EF SK V D+ W
Sbjct: 124 AEDLSKQTEIAYGTLDDGSTKEFFRRSKIAVFDKMW 159
>pdb|1WK9|A Chain A, Structural Basis For Non-Cognate Amino Acid Discrimination
By The Valyl-Trna Synthetase Editing Domain
Length = 146
Score = 31.2 bits (69), Expect = 2.3, Method: Composition-based stats.
Identities = 28/108 (25%), Positives = 46/108 (42%), Gaps = 10/108 (9%)
Query: 428 ENCRYVHPVDNR-QCPV------VIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPI 480
E+ RY H + R + P+ ++ + + GTG + P H DY ++GL
Sbjct: 40 EDERYRHLLGKRARIPLTEVWIPILADPAVEKDFGTGALKVTPAHDPLDYEIGERHGLKP 99
Query: 481 LSPVDDEGKFTEE--AGKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPY 526
+S ++ EG+ E GLD + V+ E L+ EE Y
Sbjct: 100 VSVINLEGRMEGERVPEALRGLDRF-EARRKAVELFREAGHLVKEEDY 146
>pdb|1WKA|A Chain A, Structural Basis For Non-Cognate Amino Acid Discrimination
By The Valyl-Trna Synthetase Editing Domain
Length = 147
Score = 31.2 bits (69), Expect = 2.3, Method: Composition-based stats.
Identities = 28/108 (25%), Positives = 46/108 (42%), Gaps = 10/108 (9%)
Query: 428 ENCRYVHPVDNR-QCPV------VIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPI 480
E+ RY H + R + P+ ++ + + GTG + P H DY ++GL
Sbjct: 40 EDERYRHLLGKRARIPLTEVWIPILADPAVEKDFGTGALKVTPAHDPLDYEIGERHGLKP 99
Query: 481 LSPVDDEGKFTEE--AGKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPY 526
+S ++ EG+ E GLD + V+ E L+ EE Y
Sbjct: 100 VSVINLEGRMEGERVPEALRGLDRF-EARRKAVELFREAGHLVKEEDY 146
>pdb|2XRY|A Chain A, X-Ray Structure Of Archaeal Class Ii Cpd Photolyase From
Methanosarcina Mazei
pdb|2XRZ|A Chain A, X-Ray Structure Of Archaeal Class Ii Cpd Photolyase From
Methanosarcina Mazei In Complex With Intact Cpd-Lesion
pdb|2XRZ|B Chain B, X-Ray Structure Of Archaeal Class Ii Cpd Photolyase From
Methanosarcina Mazei In Complex With Intact Cpd-Lesion
Length = 482
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 258 TLDPEYEAAQIEVFGQMSLQGY--IYRGKKPVHWSPSSRTAL 297
T DP + A+Q+E+ + GY +Y KK + WS S AL
Sbjct: 373 THDPLWNASQMELLSTGKMHGYTRMYWAKKILEWSESPEKAL 414
>pdb|3RNN|A Chain A, Crystal Structure Of Iglur2 Ligand Binding Domain With
Symmetric Sulfonamide Containing Potentiator
pdb|3RNN|B Chain B, Crystal Structure Of Iglur2 Ligand Binding Domain With
Symmetric Sulfonamide Containing Potentiator
pdb|3RNN|C Chain C, Crystal Structure Of Iglur2 Ligand Binding Domain With
Symmetric Sulfonamide Containing Potentiator
Length = 292
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 727 AEDVWQNLPFAY-TLEDGSAAEFVFESKWPVLDEKW 761
AED+ + AY TL+ GS EF SK V D+ W
Sbjct: 137 AEDLSKQTEIAYGTLDSGSTKEFFRRSKIAVFDKMW 172
>pdb|2XX7|A Chain A, Crystal Structure Of
1-(4-(1-Pyrrolidinylcarbonyl)phenyl)-3-
(Trifluoromethyl)-4,5,6,7-Tetrahydro-1h-Indazole In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 2.2a Resolution.
pdb|2XX7|B Chain B, Crystal Structure Of
1-(4-(1-Pyrrolidinylcarbonyl)phenyl)-3-
(Trifluoromethyl)-4,5,6,7-Tetrahydro-1h-Indazole In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 2.2a Resolution.
pdb|2XX7|C Chain C, Crystal Structure Of
1-(4-(1-Pyrrolidinylcarbonyl)phenyl)-3-
(Trifluoromethyl)-4,5,6,7-Tetrahydro-1h-Indazole In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 2.2a Resolution
Length = 291
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 727 AEDVWQNLPFAY-TLEDGSAAEFVFESKWPVLDEKW 761
AED+ + AY TL+ GS EF SK V D+ W
Sbjct: 153 AEDLSKQTEIAYGTLDSGSTKEFFRRSKIAVFDKMW 188
>pdb|3DP6|A Chain A, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To Glutamate
pdb|3DP6|B Chain B, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To Glutamate
pdb|3DP6|C Chain C, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To Glutamate
Length = 279
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 727 AEDVWQNLPFAY-TLEDGSAAEFVFESKWPVLDEKW 761
AED+ + AY TL+ GS EF SK V D+ W
Sbjct: 140 AEDLSKQTEIAYGTLDSGSTKEFFRRSKIAVFDKMW 175
>pdb|3RN8|A Chain A, Crystal Structure Of Iglur2 Ligand Binding Domain And
Symmetrical Carboxyl Containing Potentiator
pdb|3RN8|B Chain B, Crystal Structure Of Iglur2 Ligand Binding Domain And
Symmetrical Carboxyl Containing Potentiator
pdb|3RN8|C Chain C, Crystal Structure Of Iglur2 Ligand Binding Domain And
Symmetrical Carboxyl Containing Potentiator
Length = 280
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 727 AEDVWQNLPFAY-TLEDGSAAEFVFESKWPVLDEKW 761
AED+ + AY TL+ GS EF SK V D+ W
Sbjct: 125 AEDLSKQTEIAYGTLDSGSTKEFFRRSKIAVFDKMW 160
>pdb|3PD9|A Chain A, X-Ray Structure Of The Ligand-Binding Core Of Glua2 In
Complex With (R)-5-Hpca At 2.1 A Resolution
pdb|3PD9|B Chain B, X-Ray Structure Of The Ligand-Binding Core Of Glua2 In
Complex With (R)-5-Hpca At 2.1 A Resolution
Length = 260
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 727 AEDVWQNLPFAY-TLEDGSAAEFVFESKWPVLDEKW 761
AED+ + AY TL+ GS EF SK V D+ W
Sbjct: 122 AEDLSKQTEIAYGTLDSGSTKEFFRRSKIAVFDKMW 157
>pdb|2I3V|A Chain A, Measurement Of Conformational Changes Accompanying
Desensitization In An Ionotropic Glutamate Receptor:
Structure Of G725c Mutant
pdb|2I3V|B Chain B, Measurement Of Conformational Changes Accompanying
Desensitization In An Ionotropic Glutamate Receptor:
Structure Of G725c Mutant
pdb|2I3V|C Chain C, Measurement Of Conformational Changes Accompanying
Desensitization In An Ionotropic Glutamate Receptor:
Structure Of G725c Mutant
pdb|2I3V|D Chain D, Measurement Of Conformational Changes Accompanying
Desensitization In An Ionotropic Glutamate Receptor:
Structure Of G725c Mutant
Length = 259
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 727 AEDVWQNLPFAY-TLEDGSAAEFVFESKWPVLDEKW 761
AED+ + AY TL+ GS EF SK V D+ W
Sbjct: 122 AEDLSKQTEIAYGTLDSGSTKEFFRRSKIAVFDKMW 157
>pdb|1LBC|A Chain A, Crystal Structure Of Glur2 Ligand Binding Core (S1s2j-
N775s) In Complex With Cyclothiazide (Ctz) As Well As
Glutamate At 1.8 A Resolution
pdb|1LBC|B Chain B, Crystal Structure Of Glur2 Ligand Binding Core (S1s2j-
N775s) In Complex With Cyclothiazide (Ctz) As Well As
Glutamate At 1.8 A Resolution
pdb|1LBC|C Chain C, Crystal Structure Of Glur2 Ligand Binding Core (S1s2j-
N775s) In Complex With Cyclothiazide (Ctz) As Well As
Glutamate At 1.8 A Resolution
pdb|3H6T|A Chain A, Crystal Structure Of The Iglur2 Ligand-Binding Core
(S1s2j-N754s) In Complex With Glutamate And
Cyclothiazide At 2.25 A Resolution
pdb|3H6T|B Chain B, Crystal Structure Of The Iglur2 Ligand-Binding Core
(S1s2j-N754s) In Complex With Glutamate And
Cyclothiazide At 2.25 A Resolution
pdb|3H6T|C Chain C, Crystal Structure Of The Iglur2 Ligand-Binding Core
(S1s2j-N754s) In Complex With Glutamate And
Cyclothiazide At 2.25 A Resolution
pdb|3H6U|A Chain A, Crystal Structure Of The Iglur2 Ligand-binding Core
(s1s2j-n754s) In Complex With Glutamate And Ns1493 At
1.85 A Resolution
pdb|3H6V|A Chain A, Crystal Structure Of The Iglur2 Ligand-Binding Core
(S1s2j-N754s) In Complex With Glutamate And Ns5206 At
2.10 A Resolution
pdb|3H6V|B Chain B, Crystal Structure Of The Iglur2 Ligand-Binding Core
(S1s2j-N754s) In Complex With Glutamate And Ns5206 At
2.10 A Resolution
pdb|3H6W|A Chain A, Crystal Structure Of The Iglur2 Ligand-Binding Core
(S1s2j-N754s) In Complex With Glutamate And Ns5217 At
1.50 A Resolution
pdb|3H6W|B Chain B, Crystal Structure Of The Iglur2 Ligand-Binding Core
(S1s2j-N754s) In Complex With Glutamate And Ns5217 At
1.50 A Resolution
pdb|3KGC|A Chain A, Isolated Ligand Binding Domain Dimer Of Glua2 Ionotropic
Glutamate Receptor In Complex With Glutamate, Ly 404187
And Zk 200775
pdb|3KGC|B Chain B, Isolated Ligand Binding Domain Dimer Of Glua2 Ionotropic
Glutamate Receptor In Complex With Glutamate, Ly 404187
And Zk 200775
pdb|3BBR|A Chain A, Crystal Structure Of The Iglur2 Ligand Binding Core
(S1s2j-N775s) In Complex With A Dimeric Positive
Modulator As Well As Glutamate At 2.25 A Resolution
pdb|3BBR|B Chain B, Crystal Structure Of The Iglur2 Ligand Binding Core
(S1s2j-N775s) In Complex With A Dimeric Positive
Modulator As Well As Glutamate At 2.25 A Resolution
pdb|2XX9|A Chain A, Crystal Structure Of
1-((2-Fluoro-4-(3-(Trifluoromethyl)-4,5,6,7-
Tetrahydro-1h-Indazol-1-Yl)phenyl)methyl)-2-
Pyrrolidinone In Complex With The Ligand Binding Domain
Of The Rat Glua2 Receptor And Glutamate At 2.2a
Resolution.
pdb|2XX9|B Chain B, Crystal Structure Of
1-((2-Fluoro-4-(3-(Trifluoromethyl)-4,5,6,7-
Tetrahydro-1h-Indazol-1-Yl)phenyl)methyl)-2-
Pyrrolidinone In Complex With The Ligand Binding Domain
Of The Rat Glua2 Receptor And Glutamate At 2.2a
Resolution.
pdb|2XX9|C Chain C, Crystal Structure Of
1-((2-Fluoro-4-(3-(Trifluoromethyl)-4,5,6,7-
Tetrahydro-1h-Indazol-1-Yl)phenyl)methyl)-2-
Pyrrolidinone In Complex With The Ligand Binding Domain
Of The Rat Glua2 Receptor And Glutamate At 2.2a
Resolution.
pdb|2XXH|A Chain A, Crystal Structure Of
1-(4-(2-Oxo-2-(1-Pyrrolidinyl)ethyl)phenyl)-3-
(Trifluoromethyl)-4,5,6,7-Tetrahydro-1h-Indazole In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 1.5a Resolution.
pdb|2XXH|B Chain B, Crystal Structure Of
1-(4-(2-Oxo-2-(1-Pyrrolidinyl)ethyl)phenyl)-3-
(Trifluoromethyl)-4,5,6,7-Tetrahydro-1h-Indazole In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 1.5a Resolution.
pdb|2XXH|C Chain C, Crystal Structure Of
1-(4-(2-Oxo-2-(1-Pyrrolidinyl)ethyl)phenyl)-3-
(Trifluoromethyl)-4,5,6,7-Tetrahydro-1h-Indazole In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 1.5a Resolution.
pdb|2XXI|A Chain A, Crystal Structure Of
1-((4-(3-(Trifluoromethyl)-6,7-Dihydropyrano(4,3
-C(Pyrazol-1(4h)-Yl)phenyl)methyl)-2-Pyrrolidinone In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 1.6a Resolution.
pdb|2XXI|B Chain B, Crystal Structure Of
1-((4-(3-(Trifluoromethyl)-6,7-Dihydropyrano(4,3
-C(Pyrazol-1(4h)-Yl)phenyl)methyl)-2-Pyrrolidinone In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 1.6a Resolution.
pdb|2XXI|C Chain C, Crystal Structure Of
1-((4-(3-(Trifluoromethyl)-6,7-Dihydropyrano(4,3
-C(Pyrazol-1(4h)-Yl)phenyl)methyl)-2-Pyrrolidinone In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 1.6a Resolution.
pdb|2XX8|A Chain A, Crystal Structure Of
N,N-Dimethyl-4-(3-(Trifluoromethyl)-4,
5,6,7-Tetrahydro-1h-Indazol-1-Yl)benzamide In Complex
With The Ligand Binding Domain Of The Rat Glua2 Receptor
And Glutamate At 2.2a Resolution.
pdb|2XX8|B Chain B, Crystal Structure Of
N,N-Dimethyl-4-(3-(Trifluoromethyl)-4,
5,6,7-Tetrahydro-1h-Indazol-1-Yl)benzamide In Complex
With The Ligand Binding Domain Of The Rat Glua2 Receptor
And Glutamate At 2.2a Resolution.
pdb|2XX8|C Chain C, Crystal Structure Of
N,N-Dimethyl-4-(3-(Trifluoromethyl)-4,
5,6,7-Tetrahydro-1h-Indazol-1-Yl)benzamide In Complex
With The Ligand Binding Domain Of The Rat Glua2 Receptor
And Glutamate At 2.2a Resolution
Length = 263
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 727 AEDVWQNLPFAY-TLEDGSAAEFVFESKWPVLDEKW 761
AED+ + AY TL+ GS EF SK V D+ W
Sbjct: 124 AEDLSKQTEIAYGTLDSGSTKEFFRRSKIAVFDKMW 159
>pdb|3R7X|A Chain A, Crystal Structure Analysis Of A Quinazolinedione
Sulfonamide Bound To Human Glur2: A Novel Class Of
Competitive Ampa Receptor Antagonists With Oral Activity
pdb|3R7X|B Chain B, Crystal Structure Analysis Of A Quinazolinedione
Sulfonamide Bound To Human Glur2: A Novel Class Of
Competitive Ampa Receptor Antagonists With Oral Activity
pdb|3UA8|A Chain A, Crystal Structure Analysis Of A 6-Amino Quinazolinedione
Sulfonamide Bound To Human Glur2
Length = 263
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 727 AEDVWQNLPFAY-TLEDGSAAEFVFESKWPVLDEKW 761
AED+ + AY TL+ GS EF SK V D+ W
Sbjct: 124 AEDLSKQTEIAYGTLDSGSTKEFFRRSKIAVFDKMW 159
>pdb|3B6W|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
T686s Mutant In Complex With Glutamate At 1.7 Resolution
pdb|3B6W|D Chain D, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
T686s Mutant In Complex With Glutamate At 1.7 Resolution
pdb|3B6W|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
T686s Mutant In Complex With Glutamate At 1.7 Resolution
pdb|3B6W|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
T686s Mutant In Complex With Glutamate At 1.7 Resolution
Length = 263
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 727 AEDVWQNLPFAY-TLEDGSAAEFVFESKWPVLDEKW 761
AED+ + AY TL+ GS EF SK V D+ W
Sbjct: 124 AEDLSKQTEIAYGTLDSGSTKEFFRRSKIAVFDKMW 159
>pdb|3H03|A Chain A, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To Ubp277
pdb|3H03|B Chain B, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To Ubp277
pdb|3H03|D Chain D, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To Ubp277
pdb|3H03|G Chain G, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To Ubp277
pdb|3H06|G Chain G, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To The Willardiine Antagonist,
Ubp282
pdb|3H06|B Chain B, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To The Willardiine Antagonist,
Ubp282
pdb|3H06|E Chain E, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To The Willardiine Antagonist,
Ubp282
pdb|3H06|H Chain H, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To The Willardiine Antagonist,
Ubp282
pdb|3H06|J Chain J, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To The Willardiine Antagonist,
Ubp282
pdb|3H06|L Chain L, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To The Willardiine Antagonist,
Ubp282
pdb|3H06|N Chain N, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To The Willardiine Antagonist,
Ubp282
pdb|3H06|P Chain P, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To The Willardiine Antagonist,
Ubp282
pdb|3LSL|A Chain A, Piracetam Bound To The Ligand Binding Domain Of Glua2
(Flop Form)
pdb|3LSL|D Chain D, Piracetam Bound To The Ligand Binding Domain Of Glua2
(Flop Form)
pdb|3LSL|G Chain G, Piracetam Bound To The Ligand Binding Domain Of Glua2
(Flop Form)
pdb|3M3L|A Chain A, Pepa Bound To The Ligand Binding Domain Of Glua2 (Flop
Form)
pdb|3M3L|D Chain D, Pepa Bound To The Ligand Binding Domain Of Glua2 (Flop
Form)
pdb|3M3L|G Chain G, Pepa Bound To The Ligand Binding Domain Of Glua2 (Flop
Form)
pdb|3RTF|B Chain B, Chlorowillardiine Bound To The Ligand Binding Domain Of
Glua2
pdb|3RTF|D Chain D, Chlorowillardiine Bound To The Ligand Binding Domain Of
Glua2
pdb|3RTF|F Chain F, Chlorowillardiine Bound To The Ligand Binding Domain Of
Glua2
pdb|3RTW|B Chain B, Nitrowillardiine Bound To The Ligand Binding Domain Of
Glua2
pdb|3RTW|D Chain D, Nitrowillardiine Bound To The Ligand Binding Domain Of
Glua2
pdb|3RTW|F Chain F, Nitrowillardiine Bound To The Ligand Binding Domain Of
Glua2
pdb|4GXS|B Chain B, Ligand Binding Domain Of Glua2 (AmpaGLUTAMATE RECEPTOR)
BOUND TO (-)- Kaitocephalin
pdb|4GXS|D Chain D, Ligand Binding Domain Of Glua2 (AmpaGLUTAMATE RECEPTOR)
BOUND TO (-)- Kaitocephalin
Length = 258
Score = 30.0 bits (66), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 727 AEDVWQNLPFAY-TLEDGSAAEFVFESKWPVLDEKW 761
AED+ + AY TL+ GS EF SK V D+ W
Sbjct: 121 AEDLSKQTEIAYGTLDSGSTKEFFRRSKIAVFDKMW 156
>pdb|1MQD|A Chain A, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Des-Me-Ampa At 1.46 A Resolution.
Crystallization In The Presence Of Lithium Sulfate.
pdb|1MQD|B Chain B, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Des-Me-Ampa At 1.46 A Resolution.
Crystallization In The Presence Of Lithium Sulfate.
pdb|1MQD|C Chain C, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Des-Me-Ampa At 1.46 A Resolution.
Crystallization In The Presence Of Lithium Sulfate.
pdb|1MQD|D Chain D, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Des-Me-Ampa At 1.46 A Resolution.
Crystallization In The Presence Of Lithium Sulfate.
pdb|3B7D|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core
(Hs1s2j) In Complex With Cnqx At 2.5 A Resolution
pdb|3B7D|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core
(Hs1s2j) In Complex With Cnqx At 2.5 A Resolution
pdb|3B7D|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core
(Hs1s2j) In Complex With Cnqx At 2.5 A Resolution
pdb|3B7D|D Chain D, Crystal Structure Of The Glur2 Ligand Binding Core
(Hs1s2j) In Complex With Cnqx At 2.5 A Resolution
pdb|3B7D|E Chain E, Crystal Structure Of The Glur2 Ligand Binding Core
(Hs1s2j) In Complex With Cnqx At 2.5 A Resolution
pdb|3B7D|F Chain F, Crystal Structure Of The Glur2 Ligand Binding Core
(Hs1s2j) In Complex With Cnqx At 2.5 A Resolution
pdb|3B7D|G Chain G, Crystal Structure Of The Glur2 Ligand Binding Core
(Hs1s2j) In Complex With Cnqx At 2.5 A Resolution
pdb|3B7D|H Chain H, Crystal Structure Of The Glur2 Ligand Binding Core
(Hs1s2j) In Complex With Cnqx At 2.5 A Resolution
Length = 261
Score = 30.0 bits (66), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 727 AEDVWQNLPFAY-TLEDGSAAEFVFESKWPVLDEKW 761
AED+ + AY TL+ GS EF SK V D+ W
Sbjct: 124 AEDLSKQTEIAYGTLDSGSTKEFFRRSKIAVFDKMW 159
>pdb|1GR2|A Chain A, Structure Of A Glutamate Receptor Ligand Binding Core
(Glur2) Complexed With Kainate
pdb|1FTK|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2i)
In Complex With Kainate At 1.6 A Resolution
Length = 279
Score = 30.0 bits (66), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 727 AEDVWQNLPFAY-TLEDGSAAEFVFESKWPVLDEKW 761
AED+ + AY TL+ GS EF SK V D+ W
Sbjct: 140 AEDLSKQTEIAYGTLDSGSTKEFFRRSKIAVFDKMW 175
>pdb|1FW0|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Kainate At 2.0 A Resolution
pdb|1FTJ|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Glutamate At 1.9 Resolution
pdb|1FTJ|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Glutamate At 1.9 Resolution
pdb|1FTJ|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Glutamate At 1.9 Resolution
pdb|1FTL|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With The Antagonist Dnqx At 1.8 A Resolution
pdb|1FTL|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With The Antagonist Dnqx At 1.8 A Resolution
pdb|1FTM|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Ampa At 1.7 Resolution
pdb|1FTM|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Ampa At 1.7 Resolution
pdb|1FTM|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Ampa At 1.7 Resolution
pdb|1FTO|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In The Apo State At 2.0 A Resolution
pdb|1FTO|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In The Apo State At 2.0 A Resolution
pdb|1M5B|A Chain A, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With 2-Me-Tet-Ampa At 1.85 A Resolution.
pdb|1M5B|B Chain B, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With 2-Me-Tet-Ampa At 1.85 A Resolution.
pdb|1M5B|C Chain C, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With 2-Me-Tet-Ampa At 1.85 A Resolution.
pdb|1M5C|A Chain A, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Br-Hibo At 1.65 A Resolution
pdb|1M5E|A Chain A, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Acpa At 1.46 A Resolution
pdb|1M5E|B Chain B, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Acpa At 1.46 A Resolution
pdb|1M5E|C Chain C, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Acpa At 1.46 A Resolution
pdb|1MM6|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (s1s2j)
In Complex With Quisqualate In A Non Zinc Crystal Form
At 2.15 Angstroms Resolution
pdb|1MM6|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (s1s2j)
In Complex With Quisqualate In A Non Zinc Crystal Form
At 2.15 Angstroms Resolution
pdb|1MM7|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate In A Zinc Crystal Form At
1.65 Angstroms Resolution
pdb|1MM7|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate In A Zinc Crystal Form At
1.65 Angstroms Resolution
pdb|1MM7|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate In A Zinc Crystal Form At
1.65 Angstroms Resolution
pdb|1N0T|A Chain A, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With The Antagonist (S)-Atpo At 2.1 A
Resolution.
pdb|1N0T|B Chain B, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With The Antagonist (S)-Atpo At 2.1 A
Resolution.
pdb|1N0T|C Chain C, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With The Antagonist (S)-Atpo At 2.1 A
Resolution.
pdb|1N0T|D Chain D, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With The Antagonist (S)-Atpo At 2.1 A
Resolution.
pdb|1NNK|A Chain A, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Atpa At 1.85 A Resolution.
Crystallization With Zinc Ions.
pdb|1NNP|A Chain A, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Atpa At 1.9 A Resolution.
Crystallization Without Zinc Ions.
pdb|1NNP|B Chain B, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Atpa At 1.9 A Resolution.
Crystallization Without Zinc Ions.
pdb|1MS7|A Chain A, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Des-Me-Ampa At 1.97 A Resolution,
Crystallization In The Presence Of Zinc Acetate
pdb|1MS7|B Chain B, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Des-Me-Ampa At 1.97 A Resolution,
Crystallization In The Presence Of Zinc Acetate
pdb|1MS7|C Chain C, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Des-Me-Ampa At 1.97 A Resolution,
Crystallization In The Presence Of Zinc Acetate
pdb|1MXU|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Bromo-Willardiine (Control For The
Crystal Titration Experiments)
pdb|1MXU|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Bromo-Willardiine (Control For The
Crystal Titration Experiments)
pdb|1MXU|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Bromo-Willardiine (Control For The
Crystal Titration Experiments)
pdb|1MXV|A Chain A, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Mm Brw)
pdb|1MXV|B Chain B, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Mm Brw)
pdb|1MXV|C Chain C, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Mm Brw)
pdb|1MXW|A Chain A, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
1 Mm Brw)
pdb|1MXW|B Chain B, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
1 Mm Brw)
pdb|1MXW|C Chain C, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
1 Mm Brw)
pdb|1MXX|A Chain A, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
100 Um Brw)
pdb|1MXX|B Chain B, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
100 Um Brw)
pdb|1MXX|C Chain C, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
100 Um Brw)
pdb|1MXY|A Chain A, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Um Brw)
pdb|1MXY|B Chain B, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Um Brw)
pdb|1MXY|C Chain C, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Um Brw)
pdb|1MXZ|A Chain A, Crystal Titration Experiments (ampa Co-crystals Soaked In
1 Um Brw)
pdb|1MXZ|B Chain B, Crystal Titration Experiments (ampa Co-crystals Soaked In
1 Um Brw)
pdb|1MXZ|C Chain C, Crystal Titration Experiments (ampa Co-crystals Soaked In
1 Um Brw)
pdb|1MY0|A Chain A, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
100 Nm Brw)
pdb|1MY0|B Chain B, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
100 Nm Brw)
pdb|1MY0|C Chain C, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
100 Nm Brw)
pdb|1MY1|A Chain A, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Nm Brw)
pdb|1MY1|B Chain B, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Nm Brw)
pdb|1MY1|C Chain C, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Nm Brw)
pdb|1MY2|A Chain A, Crystal Titration Experiment (Ampa Complex Control)
pdb|1MY2|B Chain B, Crystal Titration Experiment (Ampa Complex Control)
pdb|1MY2|C Chain C, Crystal Titration Experiment (Ampa Complex Control)
pdb|1MY3|A Chain A, Crystal Structure Of Glutamate Receptor Ligand-Binding
Core In Complex With Bromo-Willardiine In The Zn Crystal
Form
pdb|1MY3|B Chain B, Crystal Structure Of Glutamate Receptor Ligand-Binding
Core In Complex With Bromo-Willardiine In The Zn Crystal
Form
pdb|1MY3|C Chain C, Crystal Structure Of Glutamate Receptor Ligand-Binding
Core In Complex With Bromo-Willardiine In The Zn Crystal
Form
pdb|1MY4|A Chain A, Crystal Structure Of Glutamate Receptor Ligand-Binding
Core In Complex With Iodo-Willardiine In The Zn Crystal
Form
pdb|1MY4|B Chain B, Crystal Structure Of Glutamate Receptor Ligand-Binding
Core In Complex With Iodo-Willardiine In The Zn Crystal
Form
pdb|1MY4|C Chain C, Crystal Structure Of Glutamate Receptor Ligand-Binding
Core In Complex With Iodo-Willardiine In The Zn Crystal
Form
pdb|1MQG|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Iodo-Willardiine At 2.15 Angstroms
Resolution
pdb|1MQG|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Iodo-Willardiine At 2.15 Angstroms
Resolution
pdb|1MQI|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (s1s2j)
In Complex With Fluoro-willardiine At 1.35 Angstroms
Resolution
pdb|1MQJ|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Willardiine At 1.65 Angstroms Resolution
pdb|1SYH|A Chain A, X-ray Structure Of The Glur2 Ligand-binding Core (s1s2j)
In Complex With (s)-cpw399 At 1.85 A Resolution.
pdb|1WVJ|A Chain A, Exploring The Glur2 Ligand-Binding Core In Complex With
The Bicyclic Ampa Analogue (S)-4-Ahcp
pdb|2AIX|A Chain A, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Thio-Atpa At 2.2 A Resolution.
pdb|2AL4|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate And Cx614.
pdb|2AL4|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate And Cx614.
pdb|2AL4|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate And Cx614.
pdb|2AL4|D Chain D, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate And Cx614.
pdb|2AL4|E Chain E, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate And Cx614.
pdb|2AL4|F Chain F, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate And Cx614.
pdb|2AL5|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Fluoro-Willardiine And Aniracetam
pdb|2AL5|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Fluoro-Willardiine And Aniracetam
pdb|2CMO|A Chain A, The Structure Of A Mixed Glur2 Ligand-Binding Core Dimer
In Complex With (S)-Glutamate And The Antagonist
(S)-Ns1209
pdb|2P2A|A Chain A, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With 2-Bn-Tet-Ampa At 2.26a Resolution
pdb|2P2A|B Chain B, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With 2-Bn-Tet-Ampa At 2.26a Resolution
pdb|3BKI|P Chain P, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Fqx At 1.87 Angstroms
pdb|3BKI|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Fqx At 1.87 Angstroms
pdb|3BKI|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Fqx At 1.87 Angstroms
pdb|3BKI|D Chain D, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Fqx At 1.87 Angstroms
pdb|3BFU|A Chain A, Structure Of The Ligand-Binding Core Of Glur2 In Complex
With The Agonist (R)-Tdpa At 1.95 A Resolution
pdb|3BFU|B Chain B, Structure Of The Ligand-Binding Core Of Glur2 In Complex
With The Agonist (R)-Tdpa At 1.95 A Resolution
pdb|3BFU|C Chain C, Structure Of The Ligand-Binding Core Of Glur2 In Complex
With The Agonist (R)-Tdpa At 1.95 A Resolution
pdb|3BFU|D Chain D, Structure Of The Ligand-Binding Core Of Glur2 In Complex
With The Agonist (R)-Tdpa At 1.95 A Resolution
pdb|3BFT|A Chain A, Structure Of The Ligand-binding Core Of Glur2 In Complex
With The Agonist (s)-tdpa At 2.25 A Resolution
pdb|3BFT|B Chain B, Structure Of The Ligand-binding Core Of Glur2 In Complex
With The Agonist (s)-tdpa At 2.25 A Resolution
pdb|3BFT|C Chain C, Structure Of The Ligand-binding Core Of Glur2 In Complex
With The Agonist (s)-tdpa At 2.25 A Resolution
pdb|2CMO|B Chain B, The Structure Of A Mixed Glur2 Ligand-Binding Core Dimer
In Complex With (S)-Glutamate And The Antagonist
(S)-Ns1209
pdb|3TZA|A Chain A, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j) In Complex With The Antagonist
(S)-2-Amino-3-(2-(2-Carboxyethyl)-5-
Chloro-4-Nitrophenyl)propionic Acid At 1.9a Resolution
pdb|3TZA|B Chain B, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j) In Complex With The Antagonist
(S)-2-Amino-3-(2-(2-Carboxyethyl)-5-
Chloro-4-Nitrophenyl)propionic Acid At 1.9a Resolution
pdb|4G8M|A Chain A, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j) In Complex With The Agonist Cbg-Iv At 2.05a
Resolution
pdb|4G8M|B Chain B, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j) In Complex With The Agonist Cbg-Iv At 2.05a
Resolution
Length = 263
Score = 30.0 bits (66), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 727 AEDVWQNLPFAY-TLEDGSAAEFVFESKWPVLDEKW 761
AED+ + AY TL+ GS EF SK V D+ W
Sbjct: 124 AEDLSKQTEIAYGTLDSGSTKEFFRRSKIAVFDKMW 159
>pdb|3PD8|A Chain A, X-Ray Structure Of The Ligand-Binding Core Of Glua2 In
Complex With (S)-7-Hpca At 2.5 A Resolution
pdb|3PD8|B Chain B, X-Ray Structure Of The Ligand-Binding Core Of Glua2 In
Complex With (S)-7-Hpca At 2.5 A Resolution
pdb|3PD8|C Chain C, X-Ray Structure Of The Ligand-Binding Core Of Glua2 In
Complex With (S)-7-Hpca At 2.5 A Resolution
Length = 261
Score = 30.0 bits (66), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 727 AEDVWQNLPFAY-TLEDGSAAEFVFESKWPVLDEKW 761
AED+ + AY TL+ GS EF SK V D+ W
Sbjct: 123 AEDLSKQTEIAYGTLDSGSTKEFFRRSKIAVFDKMW 158
>pdb|1MQH|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Bromo-Willardiine At 1.8 Angstroms
Resolution
Length = 263
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 727 AEDVWQNLPFAY-TLEDGSAAEFVFESKWPVLDEKW 761
AED+ + AY TL+ GS EF SK V D+ W
Sbjct: 124 AEDLSKQTEIAYGTLDSGSTKEFFRRSKIAVFDKMW 159
>pdb|3TDJ|A Chain A, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j-L483y- N754s) In Complex With Glutamate And
Bpam-97 At 1.95 A Resolution
pdb|3TDJ|B Chain B, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j-L483y- N754s) In Complex With Glutamate And
Bpam-97 At 1.95 A Resolution
pdb|3TKD|A Chain A, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j-L483y- N754s) In Complex With Glutamate And
Cyclothiazide At 1.45 A Resolution
pdb|3TKD|B Chain B, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j-L483y- N754s) In Complex With Glutamate And
Cyclothiazide At 1.45 A Resolution
Length = 263
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 727 AEDVWQNLPFAY-TLEDGSAAEFVFESKWPVLDEKW 761
AED+ + AY TL+ GS EF SK V D+ W
Sbjct: 124 AEDLSKQTEIAYGTLDSGSTKEFFRRSKIAVFDKMW 159
>pdb|1LB8|A Chain A, Crystal Structure Of The Non-Desensitizing Glur2 Ligand
Binding Core Mutant (S1s2j-L483y) In Complex With Ampa
At 2.3 Resolution
pdb|1LB8|B Chain B, Crystal Structure Of The Non-Desensitizing Glur2 Ligand
Binding Core Mutant (S1s2j-L483y) In Complex With Ampa
At 2.3 Resolution
pdb|1LB9|A Chain A, Crystal Structure Of The Non-Desensitizing Glur2 Ligand
Binding Core Mutant (S1s2j-L483y) In Complex With
Antagonist Dnqx At 2.3 A Resolution
pdb|1LB9|B Chain B, Crystal Structure Of The Non-Desensitizing Glur2 Ligand
Binding Core Mutant (S1s2j-L483y) In Complex With
Antagonist Dnqx At 2.3 A Resolution
Length = 263
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 727 AEDVWQNLPFAY-TLEDGSAAEFVFESKWPVLDEKW 761
AED+ + AY TL+ GS EF SK V D+ W
Sbjct: 124 AEDLSKQTEIAYGTLDSGSTKEFFRRSKIAVFDKMW 159
>pdb|2XHD|A Chain A, Crystal Structure Of N-((2s)-5-(6-Fluoro-3-Pyridinyl)-2,3-
Dihydro-1h-Inden-2-Yl)-2-Propanesulfonamide In Complex
With The Ligand Binding Domain Of The Human Glua2
Receptor
pdb|2XHD|B Chain B, Crystal Structure Of N-((2s)-5-(6-Fluoro-3-Pyridinyl)-2,3-
Dihydro-1h-Inden-2-Yl)-2-Propanesulfonamide In Complex
With The Ligand Binding Domain Of The Human Glua2
Receptor
Length = 263
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 727 AEDVWQNLPFAY-TLEDGSAAEFVFESKWPVLDEKW 761
AED+ + AY TL+ GS EF SK V D+ W
Sbjct: 124 AEDLSKQTEIAYGTLDSGSTKEFFRRSKIAVFDKMW 159
>pdb|3IJO|B Chain B, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Althiazide
pdb|3IJO|E Chain E, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Althiazide
pdb|3IJO|H Chain H, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Althiazide
pdb|3IJX|B Chain B, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Hydrochlorothiazide
pdb|3IJX|D Chain D, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Hydrochlorothiazide
pdb|3IJX|H Chain H, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Hydrochlorothiazide
pdb|3IK6|B Chain B, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Chlorothiazide
pdb|3IK6|E Chain E, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Chlorothiazide
pdb|3IK6|H Chain H, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Chlorothiazide
pdb|3IL1|B Chain B, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Idra-21
pdb|3IL1|E Chain E, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Idra-21
pdb|3IL1|H Chain H, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Idra-21
pdb|3ILT|B Chain B, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Trichlormethiazide
pdb|3ILT|E Chain E, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Trichlormethiazide
pdb|3ILT|H Chain H, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Trichlormethiazide
pdb|3ILU|B Chain B, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Hydroflumethiazide
pdb|3ILU|E Chain E, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Hydroflumethiazide
pdb|3ILU|H Chain H, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Hydroflumethiazide
pdb|3LSF|B Chain B, Piracetam Bound To The Ligand Binding Domain Of Glua2
pdb|3LSF|E Chain E, Piracetam Bound To The Ligand Binding Domain Of Glua2
pdb|3LSF|H Chain H, Piracetam Bound To The Ligand Binding Domain Of Glua2
Length = 258
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 727 AEDVWQNLPFAY-TLEDGSAAEFVFESKWPVLDEKW 761
AED+ + AY TL+ GS EF SK V D+ W
Sbjct: 121 AEDLSKQTEIAYGTLDSGSTKEFFRRSKIAVFDKMW 156
>pdb|3B6T|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
T686a Mutant In Complex With Quisqualate At 2.1
Resolution
pdb|3B6Q|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
Mutant T686a In Complex With Glutamate At 2.0 Resolution
Length = 263
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 727 AEDVWQNLPFAY-TLEDGSAAEFVFESKWPVLDEKW 761
AED+ + AY TL+ GS EF SK V D+ W
Sbjct: 124 AEDLSKQTEIAYGTLDSGSTKEFFRRSKIAVFDKMW 159
>pdb|2I3W|A Chain A, Measurement Of Conformational Changes Accompanying
Desensitization In An Ionotropic Glutamate Receptor:
Structure Of S729c Mutant
pdb|2I3W|B Chain B, Measurement Of Conformational Changes Accompanying
Desensitization In An Ionotropic Glutamate Receptor:
Structure Of S729c Mutant
Length = 259
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 727 AEDVWQNLPFAY-TLEDGSAAEFVFESKWPVLDEKW 761
AED+ + AY TL+ GS EF SK V D+ W
Sbjct: 122 AEDLSKQTEIAYGTLDSGSTKEFFRRSKIAVFDKMW 157
>pdb|2UXA|A Chain A, Crystal Structure Of The Glur2-Flip Ligand Binding Domain,
RG UNEDITED.
pdb|2UXA|B Chain B, Crystal Structure Of The Glur2-Flip Ligand Binding Domain,
RG UNEDITED.
pdb|2UXA|C Chain C, Crystal Structure Of The Glur2-Flip Ligand Binding Domain,
RG UNEDITED
Length = 261
Score = 30.0 bits (66), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 727 AEDVWQNLPFAY-TLEDGSAAEFVFESKWPVLDEKW 761
AED+ + AY TL+ GS EF SK V D+ W
Sbjct: 123 AEDLSKQTEIAYGTLDSGSTKEFFRRSKIAVFDKMW 158
>pdb|1M5D|A Chain A, X-ray Structure Of The Glur2 Ligand Binding Core (s1s2j-
Y702f) In Complex With Br-hibo At 1.73 A Resolution
pdb|1M5F|A Chain A, X-ray Structure Of The Glur2 Ligand Binding Core (s1s2j-
Y702f) In Complex With Acpa At 1.95 A Resolution
pdb|1M5F|B Chain B, X-ray Structure Of The Glur2 Ligand Binding Core (s1s2j-
Y702f) In Complex With Acpa At 1.95 A Resolution
pdb|1M5F|C Chain C, X-ray Structure Of The Glur2 Ligand Binding Core (s1s2j-
Y702f) In Complex With Acpa At 1.95 A Resolution
pdb|1SYI|A Chain A, X-Ray Structure Of The Y702f Mutant Of The Glur2 Ligand-
Binding Core (S1s2j) In Complex With (S)-Cpw399 At 2.1 A
Resolution.
pdb|1SYI|B Chain B, X-Ray Structure Of The Y702f Mutant Of The Glur2 Ligand-
Binding Core (S1s2j) In Complex With (S)-Cpw399 At 2.1 A
Resolution.
pdb|1XHY|A Chain A, X-ray Structure Of The Y702f Mutant Of The Glur2
Ligand-binding Core (s1s2j) In Complex With Kainate At
1.85 A Resolution
Length = 263
Score = 30.0 bits (66), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 727 AEDVWQNLPFAY-TLEDGSAAEFVFESKWPVLDEKW 761
AED+ + AY TL+ GS EF SK V D+ W
Sbjct: 124 AEDLSKQTEIAYGTLDSGSTKEFFRRSKIAVFDKMW 159
>pdb|1LBB|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Domain
Mutant (s1s2j-n754d) In Complex With Kainate At 2.1 A
Resolution
Length = 263
Score = 30.0 bits (66), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 727 AEDVWQNLPFAY-TLEDGSAAEFVFESKWPVLDEKW 761
AED+ + AY TL+ GS EF SK V D+ W
Sbjct: 124 AEDLSKQTEIAYGTLDSGSTKEFFRRSKIAVFDKMW 159
>pdb|3O28|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
Length = 263
Score = 30.0 bits (66), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 727 AEDVWQNLPFAY-TLEDGSAAEFVFESKWPVLDEKW 761
AED+ + AY TL+ GS EF SK V D+ W
Sbjct: 124 AEDLSKQTEIAYGTLDSGSTKEFFRRSKIAVFDKMW 159
>pdb|3O29|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|3O2A|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|3O6G|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|3O6H|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|3O6I|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|3PMV|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|3PMW|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|3PMX|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|4FAT|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
Length = 263
Score = 30.0 bits (66), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 727 AEDVWQNLPFAY-TLEDGSAAEFVFESKWPVLDEKW 761
AED+ + AY TL+ GS EF SK V D+ W
Sbjct: 124 AEDLSKQTEIAYGTLDSGSTKEFFRRSKIAVFDKMW 159
>pdb|2ANJ|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j-
Y450w) Mutant In Complex With The Partial Agonist Kainic
Acid At 2.1 A Resolution
Length = 263
Score = 29.6 bits (65), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 727 AEDVWQNLPFAY-TLEDGSAAEFVFESKWPVLDEKW 761
AED+ + AY TL+ GS EF SK V D+ W
Sbjct: 124 AEDLSKQTEIAYGTLDSGSTKEFFRRSKIAVFDKMW 159
>pdb|4F22|A Chain A, Kainate Bound To The K660a Mutant Of The Ligand Binding
Domain Of Glua3
Length = 258
Score = 29.3 bits (64), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 727 AEDVWQNLPFAY-TLEDGSAAEFVFESKWPVLDEKW 761
AED+ + AY TL+ GS AEF SK V ++ W
Sbjct: 121 AEDLAKQTEIAYGTLDSGSTAEFFRRSKIAVYEKMW 156
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,875,172
Number of Sequences: 62578
Number of extensions: 943595
Number of successful extensions: 2075
Number of sequences better than 100.0: 67
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 2007
Number of HSP's gapped (non-prelim): 89
length of query: 794
length of database: 14,973,337
effective HSP length: 107
effective length of query: 687
effective length of database: 8,277,491
effective search space: 5686636317
effective search space used: 5686636317
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)