Query 003799
Match_columns 794
No_of_seqs 373 out of 2501
Neff 7.2
Searched_HMMs 46136
Date Thu Mar 28 12:15:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003799.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003799hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0060 IleS Isoleucyl-tRNA sy 100.0 8E-158 2E-162 1382.2 53.8 644 105-791 2-829 (933)
2 PLN02843 isoleucyl-tRNA synthe 100.0 6E-138 1E-142 1259.8 62.1 670 119-791 1-849 (974)
3 PRK13804 ileS isoleucyl-tRNA s 100.0 3E-138 6E-143 1263.1 59.0 654 104-791 7-854 (961)
4 KOG0433 Isoleucyl-tRNA synthet 100.0 5E-138 1E-142 1145.7 54.3 659 91-789 2-842 (937)
5 PRK05743 ileS isoleucyl-tRNA s 100.0 4E-137 8E-142 1251.1 56.8 643 105-791 3-816 (912)
6 PLN02882 aminoacyl-tRNA ligase 100.0 4E-126 9E-131 1167.0 57.9 628 120-792 7-851 (1159)
7 PTZ00427 isoleucine-tRNA ligas 100.0 3E-125 7E-130 1154.5 57.7 649 114-792 65-978 (1205)
8 PRK06039 ileS isoleucyl-tRNA s 100.0 4E-124 8E-129 1145.3 58.0 623 117-792 7-820 (975)
9 TIGR00392 ileS isoleucyl-tRNA 100.0 9E-123 2E-127 1128.1 58.1 639 116-790 1-844 (861)
10 COG0525 ValS Valyl-tRNA synthe 100.0 3E-122 8E-127 1068.9 50.5 582 118-792 2-744 (877)
11 PRK05729 valS valyl-tRNA synth 100.0 2E-116 4E-121 1070.6 52.8 585 115-792 3-740 (874)
12 PLN02943 aminoacyl-tRNA ligase 100.0 5E-116 1E-120 1067.7 54.4 582 117-792 57-816 (958)
13 PLN02381 valyl-tRNA synthetase 100.0 4E-116 9E-121 1073.3 53.5 603 117-789 96-920 (1066)
14 PTZ00419 valyl-tRNA synthetase 100.0 4E-115 8E-120 1070.6 53.9 592 117-792 24-854 (995)
15 PRK14900 valS valyl-tRNA synth 100.0 6E-115 1E-119 1065.3 52.0 595 116-792 14-765 (1052)
16 TIGR00422 valS valyl-tRNA synt 100.0 4E-114 8E-119 1051.3 53.1 586 118-792 2-746 (861)
17 PRK13208 valS valyl-tRNA synth 100.0 2E-112 5E-117 1028.8 53.7 583 115-792 4-750 (800)
18 PLN02959 aminoacyl-tRNA ligase 100.0 1E-106 3E-111 992.9 49.6 611 115-789 7-924 (1084)
19 KOG0434 Isoleucyl-tRNA synthet 100.0 4E-105 8E-110 874.7 41.4 630 120-792 7-840 (1070)
20 TIGR00395 leuS_arch leucyl-tRN 100.0 1E-103 3E-108 959.5 53.2 585 125-785 2-816 (938)
21 KOG0432 Valyl-tRNA synthetase 100.0 3E-100 6E-105 862.1 50.4 593 109-792 39-858 (995)
22 PRK12300 leuS leucyl-tRNA synt 100.0 9E-100 2E-104 922.4 49.0 549 165-791 1-776 (897)
23 PRK00390 leuS leucyl-tRNA synt 100.0 1.6E-97 3E-102 894.1 35.9 559 118-762 2-740 (805)
24 PF00133 tRNA-synt_1: tRNA syn 100.0 9.4E-98 2E-102 874.0 29.5 398 129-572 1-402 (601)
25 TIGR00396 leuS_bact leucyl-tRN 100.0 2.4E-95 5E-100 876.5 42.0 557 121-763 1-778 (842)
26 PLN02563 aminoacyl-tRNA ligase 100.0 5.1E-93 1.1E-97 857.2 41.0 566 116-763 75-893 (963)
27 COG0495 LeuS Leucyl-tRNA synth 100.0 1.5E-75 3.2E-80 683.0 39.7 608 119-791 3-799 (814)
28 KOG0435 Leucyl-tRNA synthetase 100.0 1.9E-65 4E-70 564.0 27.4 551 125-763 34-800 (876)
29 PLN02224 methionine-tRNA ligas 100.0 9.2E-60 2E-64 546.7 31.9 463 148-736 67-546 (616)
30 KOG0437 Leucyl-tRNA synthetase 100.0 1.5E-57 3.2E-62 503.9 36.8 607 120-784 11-909 (1080)
31 PLN02610 probable methionyl-tR 100.0 2.4E-57 5.3E-62 540.8 36.4 467 147-736 14-532 (801)
32 COG0143 MetG Methionyl-tRNA sy 100.0 5.4E-57 1.2E-61 512.7 31.6 462 149-737 4-513 (558)
33 PRK12267 methionyl-tRNA synthe 100.0 5.4E-57 1.2E-61 535.1 31.2 458 150-736 4-478 (648)
34 PRK00133 metG methionyl-tRNA s 100.0 1.5E-55 3.3E-60 523.5 29.5 450 150-736 2-503 (673)
35 PRK12268 methionyl-tRNA synthe 100.0 1.4E-55 3.1E-60 515.9 26.8 487 150-757 3-521 (556)
36 TIGR00398 metG methionyl-tRNA 100.0 5.6E-55 1.2E-59 508.1 30.8 467 152-736 1-503 (530)
37 KOG0436 Methionyl-tRNA synthet 100.0 7.1E-55 1.5E-59 458.8 25.6 466 148-737 37-528 (578)
38 PRK11893 methionyl-tRNA synthe 100.0 1.1E-51 2.5E-56 479.1 31.3 456 150-736 1-476 (511)
39 cd00817 ValRS_core catalytic c 100.0 5.1E-44 1.1E-48 398.6 13.6 154 150-303 1-156 (382)
40 PF09334 tRNA-synt_1g: tRNA sy 100.0 5.9E-41 1.3E-45 373.7 1.7 359 152-619 1-390 (391)
41 cd00814 MetRS_core catalytic c 100.0 1.4E-37 3E-42 339.6 13.0 217 151-413 1-218 (319)
42 cd00818 IleRS_core catalytic c 100.0 9.1E-38 2E-42 343.0 9.5 140 150-289 1-143 (338)
43 cd00668 Ile_Leu_Val_MetRS_core 100.0 8E-35 1.7E-39 317.2 12.4 136 151-287 1-136 (312)
44 KOG1247 Methionyl-tRNA synthet 100.0 3.5E-31 7.5E-36 279.5 19.4 477 148-736 12-520 (567)
45 PRK00260 cysS cysteinyl-tRNA s 100.0 3.3E-30 7.2E-35 293.9 25.0 337 148-686 22-376 (463)
46 cd00812 LeuRS_core catalytic c 100.0 4.6E-32 1E-36 295.3 8.0 126 151-290 1-126 (314)
47 PTZ00399 cysteinyl-tRNA-synthe 100.0 2.6E-28 5.6E-33 286.2 24.5 373 149-685 60-437 (651)
48 cd07960 Anticodon_Ia_Ile_BEm A 100.0 1.6E-27 3.4E-32 239.5 20.4 179 597-783 1-180 (180)
49 TIGR00435 cysS cysteinyl-tRNA 99.9 1.6E-26 3.6E-31 263.1 20.1 129 148-295 20-149 (465)
50 cd07961 Anticodon_Ia_Ile_ABEc 99.9 2.5E-26 5.4E-31 231.4 19.2 178 597-782 1-182 (183)
51 TIGR03447 mycothiol_MshC cyste 99.9 6.6E-26 1.4E-30 250.5 21.9 127 148-293 35-165 (411)
52 PLN02946 cysteine-tRNA ligase 99.9 1.2E-25 2.6E-30 256.7 23.3 345 158-686 87-444 (557)
53 PRK12418 cysteinyl-tRNA synthe 99.9 1.1E-25 2.3E-30 247.9 21.7 124 151-293 11-138 (384)
54 PRK14535 cysS cysteinyl-tRNA s 99.9 7.1E-25 1.5E-29 251.2 20.9 123 155-294 252-375 (699)
55 PRK14536 cysS cysteinyl-tRNA s 99.9 1.5E-24 3.2E-29 245.4 22.9 352 155-676 27-400 (490)
56 COG0215 CysS Cysteinyl-tRNA sy 99.9 9.7E-23 2.1E-27 224.8 19.6 324 157-677 28-370 (464)
57 PRK14534 cysS cysteinyl-tRNA s 99.9 3.3E-22 7.2E-27 225.3 22.6 123 154-293 24-156 (481)
58 PRK01611 argS arginyl-tRNA syn 99.9 1.7E-20 3.8E-25 217.0 25.2 126 148-289 109-235 (507)
59 PF08264 Anticodon_1: Anticodo 99.9 7.7E-21 1.7E-25 185.4 15.0 141 641-790 1-142 (153)
60 PF13603 tRNA-synt_1_2: Leucyl 99.8 3.4E-21 7.3E-26 191.7 3.5 158 310-515 7-185 (185)
61 PF01406 tRNA-synt_1e: tRNA sy 99.7 3.5E-18 7.7E-23 180.4 10.7 123 154-293 11-134 (300)
62 cd07962 Anticodon_Ia_Val Antic 99.7 5.9E-17 1.3E-21 155.1 16.8 135 597-734 1-135 (135)
63 cd00671 ArgRS_core catalytic c 99.7 4.2E-17 9E-22 168.1 13.5 124 152-294 2-125 (212)
64 TIGR00456 argS arginyl-tRNA sy 99.7 6.9E-16 1.5E-20 180.9 25.2 136 149-287 111-286 (566)
65 KOG2007 Cysteinyl-tRNA synthet 99.7 1.4E-15 3.1E-20 165.9 24.9 348 158-689 62-429 (586)
66 cd07959 Anticodon_Ia_Leu_AEc A 99.7 8.2E-16 1.8E-20 142.9 14.9 116 597-734 1-117 (117)
67 cd00674 LysRS_core_class_I cat 99.7 6.5E-16 1.4E-20 169.1 15.3 125 149-282 18-151 (353)
68 cd07957 Anticodon_Ia_Met Antic 99.6 1.5E-15 3.3E-20 143.3 12.9 96 637-734 34-129 (129)
69 cd00672 CysRS_core catalytic c 99.6 1.4E-15 3.1E-20 156.2 11.2 93 148-258 19-112 (213)
70 cd07958 Anticodon_Ia_Leu_BEm A 99.6 3.4E-14 7.4E-19 131.7 13.3 117 597-734 1-117 (117)
71 PRK00750 lysK lysyl-tRNA synth 99.5 8.2E-14 1.8E-18 160.8 8.8 127 149-282 22-157 (510)
72 COG0018 ArgS Arginyl-tRNA synt 99.4 3.2E-11 6.8E-16 140.0 27.5 133 149-283 116-287 (577)
73 PRK12451 arginyl-tRNA syntheta 99.3 2.7E-10 5.9E-15 133.6 27.0 136 149-288 112-285 (562)
74 cd07375 Anticodon_Ia_like Anti 99.3 2E-11 4.2E-16 112.6 13.8 116 600-723 2-117 (117)
75 TIGR00467 lysS_arch lysyl-tRNA 99.2 2.7E-11 5.9E-16 139.1 11.8 96 150-251 18-121 (515)
76 cd00802 class_I_aaRS_core cata 99.2 4E-11 8.6E-16 116.0 9.2 76 155-244 2-77 (143)
77 PLN02286 arginine-tRNA ligase 99.1 3.8E-08 8.1E-13 115.8 27.7 134 149-287 116-288 (576)
78 PF00750 tRNA-synt_1d: tRNA sy 98.8 2E-08 4.4E-13 111.5 13.0 138 148-287 18-197 (354)
79 cd09287 GluRS_non_core catalyt 98.4 6.3E-07 1.4E-11 93.3 8.4 91 158-282 7-97 (240)
80 PRK04156 gltX glutamyl-tRNA sy 98.3 1.6E-06 3.4E-11 100.6 8.0 97 151-282 101-197 (567)
81 TIGR00463 gltX_arch glutamyl-t 98.2 3.8E-06 8.2E-11 97.3 8.4 94 153-282 94-187 (560)
82 PLN03233 putative glutamate-tR 98.1 6E-06 1.3E-10 94.7 8.7 94 153-282 12-105 (523)
83 TIGR03838 queuosine_YadB gluta 98.1 7.3E-06 1.6E-10 87.3 8.2 89 158-282 6-95 (272)
84 PTZ00402 glutamyl-tRNA synthet 98.1 7.4E-06 1.6E-10 95.0 8.6 93 153-281 53-146 (601)
85 cd00807 GlnRS_core catalytic c 98.1 1.1E-05 2.4E-10 83.8 8.8 90 157-282 6-95 (238)
86 PLN02907 glutamate-tRNA ligase 98.1 1.4E-05 3E-10 96.0 10.1 94 153-282 214-307 (722)
87 PF00749 tRNA-synt_1c: tRNA sy 98.0 1E-05 2.3E-10 88.4 8.0 89 158-282 7-96 (314)
88 COG0008 GlnS Glutamyl- and glu 98.0 1.4E-05 3E-10 91.1 8.5 94 153-282 10-104 (472)
89 PTZ00437 glutaminyl-tRNA synth 98.0 1.8E-05 4E-10 91.0 9.2 92 155-282 54-145 (574)
90 TIGR00440 glnS glutaminyl-tRNA 97.9 2.2E-05 4.8E-10 90.2 8.8 91 157-283 5-96 (522)
91 PRK12558 glutamyl-tRNA synthet 97.9 2.6E-05 5.5E-10 88.5 9.0 90 157-282 7-96 (445)
92 PRK05710 glutamyl-Q tRNA(Asp) 97.9 3E-05 6.4E-10 83.7 8.0 90 157-282 10-100 (299)
93 PRK05347 glutaminyl-tRNA synth 97.9 3.2E-05 6.9E-10 89.2 8.5 94 153-282 30-124 (554)
94 PRK12410 glutamylglutaminyl-tR 97.9 3.2E-05 6.9E-10 87.3 8.4 89 158-282 5-93 (433)
95 PRK14895 gltX glutamyl-tRNA sy 97.8 4E-05 8.7E-10 87.9 8.7 90 157-282 9-99 (513)
96 TIGR00464 gltX_bact glutamyl-t 97.8 3.6E-05 7.9E-10 88.6 8.3 89 158-282 7-96 (470)
97 cd00418 GlxRS_core catalytic c 97.8 4.7E-05 1E-09 79.1 8.3 86 157-278 6-92 (230)
98 PLN02859 glutamine-tRNA ligase 97.8 5.7E-05 1.2E-09 89.9 9.3 94 153-282 265-358 (788)
99 PRK14703 glutaminyl-tRNA synth 97.8 4.5E-05 9.8E-10 91.5 8.0 95 153-283 32-127 (771)
100 PLN02627 glutamyl-tRNA synthet 97.7 9.5E-05 2.1E-09 85.1 8.3 93 154-282 47-148 (535)
101 PRK01406 gltX glutamyl-tRNA sy 97.5 0.0002 4.3E-09 82.6 8.1 91 156-282 8-106 (476)
102 cd00808 GluRS_core catalytic c 97.5 0.00028 6.1E-09 73.9 8.1 86 157-278 6-100 (239)
103 KOG4426 Arginyl-tRNA synthetas 96.7 0.015 3.3E-07 63.9 12.1 144 149-297 187-369 (656)
104 KOG1147 Glutamyl-tRNA syntheta 96.5 0.01 2.2E-07 67.0 9.2 99 153-287 201-299 (712)
105 cd00817 ValRS_core catalytic c 96.0 0.007 1.5E-07 68.3 4.7 68 505-572 118-197 (382)
106 KOG1148 Glutaminyl-tRNA synthe 95.9 0.02 4.4E-07 65.3 7.5 90 154-282 250-342 (764)
107 PRK11893 methionyl-tRNA synthe 95.8 0.0074 1.6E-07 70.7 4.0 66 506-571 101-184 (511)
108 PF01921 tRNA-synt_1f: tRNA sy 95.5 0.0048 1E-07 68.0 0.8 97 149-250 22-126 (360)
109 COG1384 LysS Lysyl-tRNA synthe 95.2 0.043 9.4E-07 62.5 7.3 98 150-251 19-124 (521)
110 PRK12268 methionyl-tRNA synthe 95.2 0.0096 2.1E-07 70.6 2.2 43 530-572 171-213 (556)
111 KOG1195 Arginyl-tRNA synthetas 94.5 0.36 7.8E-06 54.8 11.9 151 127-281 88-276 (567)
112 TIGR00398 metG methionyl-tRNA 94.5 0.018 3.9E-07 67.9 2.0 49 524-572 160-211 (530)
113 KOG1149 Glutamyl-tRNA syntheta 94.3 0.19 4E-06 56.0 8.9 129 158-322 39-191 (524)
114 cd00672 CysRS_core catalytic c 94.0 0.0088 1.9E-07 61.9 -1.7 90 505-598 116-213 (213)
115 cd07956 Anticodon_Ia_Arg Antic 92.9 1.1 2.3E-05 43.9 11.1 135 576-719 2-148 (156)
116 COG0495 LeuS Leucyl-tRNA synth 92.8 0.026 5.7E-07 68.5 -0.6 54 415-474 259-312 (814)
117 cd00818 IleRS_core catalytic c 92.2 0.13 2.9E-06 57.0 4.1 59 505-572 119-177 (338)
118 PRK12267 methionyl-tRNA synthe 90.3 0.23 4.9E-06 60.2 3.8 60 506-565 104-178 (648)
119 cd00806 TrpRS_core catalytic c 86.0 2.7 5.8E-05 45.4 8.2 69 160-255 7-75 (280)
120 PRK12285 tryptophanyl-tRNA syn 84.4 5.9 0.00013 44.5 10.2 79 149-256 64-142 (368)
121 PLN02486 aminoacyl-tRNA ligase 80.6 16 0.00034 41.3 11.7 89 148-264 70-159 (383)
122 PLN02563 aminoacyl-tRNA ligase 80.2 1.4 3E-05 55.5 3.5 66 506-572 213-292 (963)
123 cd00395 Tyr_Trp_RS_core cataly 78.3 6 0.00013 42.6 7.3 71 161-248 8-79 (273)
124 PRK12284 tryptophanyl-tRNA syn 77.1 9.2 0.0002 43.6 8.5 95 161-283 11-108 (431)
125 TIGR00396 leuS_bact leucyl-tRN 68.8 4.3 9.3E-05 50.7 3.7 67 506-572 131-212 (842)
126 PLN02886 aminoacyl-tRNA ligase 67.9 11 0.00024 42.5 6.4 94 160-281 54-148 (389)
127 cd00805 TyrRS_core catalytic c 66.8 8.8 0.00019 41.2 5.2 72 160-248 8-80 (269)
128 PRK08560 tyrosyl-tRNA syntheta 66.3 18 0.00039 40.0 7.7 40 150-194 29-68 (329)
129 cd00814 MetRS_core catalytic c 65.3 5.9 0.00013 43.6 3.6 62 507-571 101-165 (319)
130 PRK00133 metG methionyl-tRNA s 65.2 3.8 8.2E-05 49.9 2.2 35 530-564 169-203 (673)
131 PF05746 DALR_1: DALR anticodo 60.2 68 0.0015 29.2 9.3 79 638-720 32-112 (119)
132 PRK12556 tryptophanyl-tRNA syn 59.4 24 0.00051 39.2 6.9 67 161-254 12-78 (332)
133 PF00579 tRNA-synt_1b: tRNA sy 58.9 35 0.00076 36.9 8.1 41 150-195 4-44 (292)
134 PRK00927 tryptophanyl-tRNA syn 57.4 17 0.00036 40.4 5.4 31 160-194 9-39 (333)
135 PRK00390 leuS leucyl-tRNA synt 54.4 9.8 0.00021 47.3 3.3 62 505-566 133-208 (805)
136 TIGR00234 tyrS tyrosyl-tRNA sy 51.0 15 0.00032 41.5 3.7 44 151-200 30-74 (377)
137 PLN02610 probable methionyl-tR 49.9 12 0.00025 46.6 2.8 42 523-564 180-221 (801)
138 PRK05912 tyrosyl-tRNA syntheta 48.0 18 0.00039 41.4 3.8 41 150-195 32-73 (408)
139 KOG0435 Leucyl-tRNA synthetase 47.0 8.1 0.00017 45.8 0.8 36 530-565 198-233 (876)
140 PRK13354 tyrosyl-tRNA syntheta 46.2 38 0.00082 38.7 6.0 43 149-196 31-74 (410)
141 cd00668 Ile_Leu_Val_MetRS_core 45.2 17 0.00036 39.8 3.0 52 505-571 114-165 (312)
142 COG0180 TrpS Tryptophanyl-tRNA 42.1 62 0.0014 35.5 6.6 43 151-199 5-48 (314)
143 cd00812 LeuRS_core catalytic c 41.7 19 0.0004 39.6 2.6 55 505-571 101-157 (314)
144 COG1656 Uncharacterized conser 39.0 58 0.0013 32.2 5.2 89 179-298 18-108 (165)
145 TIGR00233 trpS tryptophanyl-tR 38.8 24 0.00052 39.0 2.9 32 160-195 10-41 (328)
146 PRK12283 tryptophanyl-tRNA syn 36.7 90 0.002 35.5 7.0 87 160-274 10-98 (398)
147 PTZ00126 tyrosyl-tRNA syntheta 34.8 34 0.00073 38.7 3.3 42 150-195 65-106 (383)
148 PRK12282 tryptophanyl-tRNA syn 32.4 1.2E+02 0.0025 33.8 7.0 16 161-176 11-26 (333)
149 cd07955 Anticodon_Ia_Cys_like 30.2 1.6E+02 0.0035 25.4 6.1 53 600-676 2-55 (81)
150 KOG2145 Cytoplasmic tryptophan 30.0 49 0.0011 35.6 3.3 27 148-174 82-108 (397)
151 KOG3326 Uncharacterized conser 27.5 2.2E+02 0.0049 27.5 6.8 62 197-260 50-117 (154)
152 COG0162 TyrS Tyrosyl-tRNA synt 25.4 69 0.0015 36.5 3.7 31 161-195 41-72 (401)
153 COG1998 RPS31 Ribosomal protei 25.2 44 0.00095 26.2 1.4 28 288-318 20-49 (51)
154 PF04918 DltD_M: DltD central 23.1 2.4E+02 0.0052 27.8 6.7 24 536-560 23-46 (163)
155 PRK14900 valS valyl-tRNA synth 23.0 44 0.00096 42.9 1.8 35 263-297 330-367 (1052)
156 PLN02517 phosphatidylcholine-s 20.7 91 0.002 37.2 3.5 72 508-587 159-232 (642)
No 1
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.5e-158 Score=1382.25 Aligned_cols=644 Identities=46% Similarity=0.821 Sum_probs=609.4
Q ss_pred cccccccCCCccCCCCCCcccccHHHHHHHhhcCcchhccc--cCCCCcEEEEcCCCCCCCcccchHHHhHHHHHHHHHH
Q 003799 105 RYKHTVDLPKTTFGMRANALVREPEIHKLWDDHQVFLRVAD--KNDGENFVLHDGPPYANGNLHMGHALNKILKDIINRY 182 (794)
Q Consensus 105 ~~~~t~~lp~t~f~~r~n~~~~E~~~~~~W~~~~~~~~~~~--~~~~~~f~i~~~pPy~nG~lHiGHa~~~il~Dii~R~ 182 (794)
.|++|||||+|.||||+|+..+|++++++|+++++|++..+ +.++++|++|||||||||.+|||||+|+|+||||.||
T Consensus 2 ~~k~tl~lp~T~fpmr~~l~~~E~~i~~~W~e~~iy~k~~~~~~~g~~~FvfhDGPPyANG~iHiGHalnKilKDiI~Ry 81 (933)
T COG0060 2 DYKDTLNLPKTDFPMRANLPKKEPKILKFWEENDIYEKIREERNKGKPKFVLHDGPPYANGNIHIGHALNKILKDIIVRY 81 (933)
T ss_pred CccccccCccCCCCccCChhhcCHHHHHHHHHhhHHHHHHHHHhCCCCcEEEeCCCCCCCCCcchhhhHHHhhhhhhhhh
Confidence 58899999999999999999999999999999999999873 4688999999999999999999999999999999999
Q ss_pred HHhCCCeeEEeccccCCCchHHHHHHhhchhh--hhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCCccccCC
Q 003799 183 KLLQNYKVRYVPGWDCHGLPIELKVLQSLDED--AKKDLTPSKLRAKAAKFAKATVKAQMASFKRYGVWADWNNPYLTLD 260 (794)
Q Consensus 183 ~r~~G~~V~~~~G~D~hGlpie~~~~k~~~~~--~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~lGi~~dwd~~~~T~d 260 (794)
+.|+||+|.++|||||||||||.+++|+++.. +...++.++|+++|+++|.++++.|+++|+|||+|+||+++|.|||
T Consensus 82 ~~m~G~~v~~~pGWDcHGLPIE~~vek~lg~~k~~i~~~~~~efr~~Cr~~a~~~v~~q~~~f~RLGv~~Dw~npY~Tmd 161 (933)
T COG0060 82 KTMQGYDVPYVPGWDCHGLPIELKVEKKLGIGKKDIESFGVEEFREKCREFALEQVDEQKEQFKRLGVWGDWENPYKTMD 161 (933)
T ss_pred hcccCCcCCCCCCCcCCCchHHHHHHHHhCCCcchhhhcCHHHHHHHHHHHHHHHHHHHHHHHHhheEeeccCCCeecCC
Confidence 99999999999999999999999999999842 3356889999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHcCCeeecccCceeccCCCccccccccccCCcccccccceeEEeccCCCCcccccccccCCccce
Q 003799 261 PEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAEAELEYPEGHVSRSIYAVFRMVSAPPSTSGLLNEFLPDLGLA 340 (794)
Q Consensus 261 ~~~~~~v~~~f~~L~~kGlIy~~~~~v~w~~~~~t~Lae~Evey~e~~~~~~~~v~F~l~~~~~~~~~~l~~~~~~~~l~ 340 (794)
+.|++.++++|++|++|||||||.+||+|||+|+|+|||+||+|.+ +.++|+||+|++.+.+ ...+.+++
T Consensus 162 ~~ye~~~~~~f~~~~~kGllyrg~Kpv~wsp~c~TaLAeaEvey~d-~~dpSIyV~F~v~~~~---------~~~~~~lv 231 (933)
T COG0060 162 PSYEESVWWAFKELYEKGLLYRGYKPVPWSPRCETALAEAEVEYGD-VKDPSIYVKFPVKDEG---------LDENAYLV 231 (933)
T ss_pred HHHHHHHHHHHHHHHHCCCeecCCeeeeecCCCCcchhhhhhcccc-cCCceEEEEEEeccCC---------CCCCcEEE
Confidence 9999999999999999999999999999999999999999999976 9999999999997641 12568999
Q ss_pred eccCCCCccccccEEEECCCcceeeeeecccccCCCCCcCCCCCCCCCcccCCcceEeeecccchHHHHHhcCCc-eEEE
Q 003799 341 VWTTTPWTVPANAAVAVNAKLQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFIIVASDLVPTLEAKWGTK-LVIK 419 (794)
Q Consensus 341 iwTT~PwTi~~n~av~v~p~~~Y~~v~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~iv~~~~~~~~~~~~~~~-~~~~ 419 (794)
||||||||||+|.||||||+.+|+++++. ++.+|||+++++++.+..|.+ ++++
T Consensus 232 iWTTTPWTLPaN~aiav~pd~~Y~lv~~~-------------------------~~~~IlA~~lve~~~~~~~~~~~~vl 286 (933)
T COG0060 232 IWTTTPWTLPANLAIAVHPDLDYVLVEVN-------------------------GEKLILAKALVESVAKKAGVEDYEVL 286 (933)
T ss_pred EEeCCCCCchhcceeEeCCCcceEEEEEC-------------------------CEEEEEhHHHHHHHHHHcCCcceEEe
Confidence 99999999999999999999999999876 489999999999999999987 8999
Q ss_pred eeeccCcccCCeeecCCCC----CcccEEeccCcccccCCCCceeecCCCChhhHHHHHHhC-CCccccCCCCCcccccc
Q 003799 420 KTLAGSDLENCRYVHPVDN----RQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYG-LPILSPVDDEGKFTEEA 494 (794)
Q Consensus 420 ~~~~G~~L~g~~~~~Pl~~----~~~pvvi~~~~V~~~~GTG~Vh~aPaHg~~D~~~~~~~g-l~i~~~vd~~G~~~~~~ 494 (794)
++++|++|+|..|.|||.. +..|| +.+|||+.+.|||+||+|||||+|||.+|+++| +|+++|||++|+||+++
T Consensus 287 ~~~kG~~Leg~~y~hPf~~~~~~~~~~v-~~gd~VT~d~GTG~VHtAPghGeeDy~vg~~~g~l~v~~pVD~~G~yt~~~ 365 (933)
T COG0060 287 ETFKGSELEGLRYEHPFYDFVYDRAFPV-ILGDHVTLDDGTGLVHTAPGHGEEDYEVGKKYGLLEVLNPVDDNGRYTEEA 365 (933)
T ss_pred EEeehhhhCCCEeeCCcccccccceeeE-EecCeEecCCCccceecCCCCCHHHHHHHHHcCCcCCccccCCCccccccc
Confidence 9999999999999999995 77788 679999999999999999999999999999999 79999999999999999
Q ss_pred CCCCCccccccchHHHHHHHHhcCCcccccccccccccccCCCCcEEEcccCccccchhhHHHHHHhhhcCeeecCCC--
Q 003799 495 GKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTKKPTIFRATEQWFASVEGFRQAAMDAIGQVKWVPPQ-- 572 (794)
Q Consensus 495 ~~~~G~~v~~ea~~~ii~~L~~~g~l~~~~~~~h~yp~~WRt~~pii~r~t~QWfi~~~~~~~~~l~~i~~v~~~P~~-- 572 (794)
+.|.|+.+. +||+.||+.|+++|.|++.+.|.|+||||||||+|||||+|+|||++|+++|++|++++++|+|+|.+
T Consensus 366 ~~~~G~~v~-dAn~~Ii~~Lk~~g~Ll~~e~i~HsYPhcWR~ktPlIyRAt~QWFi~v~~~r~~~l~~i~~v~w~P~~~~ 444 (933)
T COG0060 366 PKYEGLFVK-DANKKIIEDLKEKGNLLKSEKIEHSYPHCWRTKTPLIYRATPQWFVSVDKLRDKMLKEINKVNWVPDWGK 444 (933)
T ss_pred hhhCCceec-cCCHHHHHHHHhCCceeeeeeEEeCCCcccCCCCeeEEeecchheeEHHHHHHHHHHHHhcceEEChhHH
Confidence 999999995 99999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred --------------------------------------------------------------------------------
Q 003799 573 -------------------------------------------------------------------------------- 572 (794)
Q Consensus 573 -------------------------------------------------------------------------------- 572 (794)
T Consensus 445 ~R~~~mve~r~DW~ISRQR~WGvPiPi~~~~~~g~~~~~~~El~e~~~~~~~~~g~~~w~~~~idel~~~~~~~g~~~~r 524 (933)
T COG0060 445 NRFGNMVENRPDWCISRQRYWGVPIPVWYCKETGEILVITEELEELVGQLVEEKGIDDWHRPDIDELLPPCPEDGKEYRR 524 (933)
T ss_pred HHHHHHHcCCCcceeeccccCCCceeEEEECCCCCeeccHHHHHHHHHHHhhhcCchhhhccchHhhcCCCCCCcceeEe
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 003799 573 -------------------------------------------------------------------------------- 572 (794)
Q Consensus 573 -------------------------------------------------------------------------------- 572 (794)
T Consensus 525 v~DvlDVWFDSGs~~~a~~~~~~~~~~~~~~aD~~lEGsDQ~RGWF~Ssl~~s~a~~~~aPYk~vltHGfvlDe~GrKMS 604 (933)
T COG0060 525 VPDVLDVWFDSGSTPYAVLHPRENLKFPALFADFYLEGSDQTRGWFYSSLLTSTALFGRAPYKNVLTHGFVLDEKGRKMS 604 (933)
T ss_pred cCcceEEEEcCCCCcccccCCcccccCccccCcEEEEeccccchhHHHHHHHHHHHcCCchHHHHhhcccEECCCCCCcc
Confidence
Q ss_pred -----------CCCCCCCchhhhhhhhcCCCCceecChHHHHHHHHHHHHHHhHHHHHHhcccCCCCCC-CcCCCCCChh
Q 003799 573 -----------EAPGYGADVLRLWVSSVDYTGDVMIGPQVLRQMSDIYRKLRGTLRYLLGNLHDWRVGN-SISYDDLPMI 640 (794)
Q Consensus 573 -----------~~~~yGaD~lRl~las~~~~~Di~~s~~~l~~~~~~~~kl~Nt~rfll~nl~~~~~~~-~~~~~~l~~~ 640 (794)
++++||||+||||++++++++|+.+|+++++++.+.|++||||+||+++|+++|+|.. .++..++..+
T Consensus 605 KSlGN~v~P~~V~~~yGADiLRLwv~ssd~~~dl~~s~~il~~~~~~~r~irNt~rF~l~nl~~fdp~~~~~~~~~~~~~ 684 (933)
T COG0060 605 KSLGNVVDPQDVIDKYGADILRLWVASSDYWEDLRFSDEILKQVREVYRKIRNTYRFLLGNLDDFDPKKDAVLPEELREL 684 (933)
T ss_pred ccCCCcCCHHHHHHhhCchheeeeeeecCchhccccCHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccccchhhcchh
Confidence 3468999999999999999999999999999999999999999999999999999984 3566788999
Q ss_pred hHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhHHHHHhhccccccCCCChHhHHHHHHHHHHHHHHHHHHhc
Q 003799 641 DQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIA 720 (794)
Q Consensus 641 D~~il~~l~~lv~~v~~~~e~y~f~~ai~~l~~f~~~~lsn~Yle~~K~rly~~~~d~~~r~s~~~vL~~iL~~l~~lLa 720 (794)
|||+|+++++++++++++|++|+|++|++.|++|+.++||+|||+++|+|+|++..++.+|+++|++|+++|..++++||
T Consensus 685 Drwil~rl~~l~~~v~eaye~y~f~~v~~~l~~F~~~dLS~~Yld~~kdr~y~~~~~s~~rraa~~~Ly~il~~l~~~lA 764 (933)
T COG0060 685 DRWILSRLNSLVKEVREAYENYDFHKVVRALMNFVSEDLSNWYLDIIKDRLYTEAADSPDRRAAQTTLYHILKALVRLLA 764 (933)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999988999999999999999999999999
Q ss_pred cccchHHHHHHHhCCCCccccCCCCCCceeecCCCCCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhcCC
Q 003799 721 PILPHLAEDVWQNLPFAYTLEDGSAAEFVFESKWPVLDEKWRTFPVGEIYFWGKILEVIVVVTYLNETEGF 791 (794)
Q Consensus 721 P~~P~~aEEiw~~L~~~~~~~~~~~~~sV~~~~wP~~~e~~~~~~~~~~~~~~~i~~lR~~v~~~~e~~~~ 791 (794)
||+||+|||+|++|+.. ...+|||++.||++++.+.+.+......|..++++|..+++++|.++.
T Consensus 765 PilPftaEeiw~~l~~~------~~~eSVhl~~~p~~~~~~~~~~~~~~~r~~~~~k~R~~v~~~l~~~r~ 829 (933)
T COG0060 765 PILPFTAEEIWQNLPGE------RKEESVHLEDWPEVDEELIDVEAALAARWEALLKLRDPVNKALEAARL 829 (933)
T ss_pred ccchhhHHHHHHhCccC------CCCceeEeccCCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999754 114799999999999887765566788899999999999999999874
No 2
>PLN02843 isoleucyl-tRNA synthetase
Probab=100.00 E-value=6.3e-138 Score=1259.84 Aligned_cols=670 Identities=76% Similarity=1.264 Sum_probs=603.2
Q ss_pred CCCCcccccHHHHHHHhhcCcchhccccCCCCcEEEEcCCCCCCCcccchHHHhHHHHHHHHHHHHhCCCeeEEeccccC
Q 003799 119 MRANALVREPEIHKLWDDHQVFLRVADKNDGENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDC 198 (794)
Q Consensus 119 ~r~n~~~~E~~~~~~W~~~~~~~~~~~~~~~~~f~i~~~pPy~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G~D~ 198 (794)
||+|+..+|++|+++|+++++|++..+.+.+++|+|++|||||||.||||||+|++++|+++||+||+||+|+|+|||||
T Consensus 1 m~~~~~~~E~~~~~~W~~~~~y~~~~~~~~~~~f~i~~~PPy~nG~lHiGHa~~~~lkDii~Ry~rm~G~~v~~~pG~D~ 80 (974)
T PLN02843 1 MRANSVTREPEIQKLWEENQVYKRVSDRNNGESFTLHDGPPYANGDLHIGHALNKILKDFINRYQLLQGKKVHYVPGWDC 80 (974)
T ss_pred CCCChHHhhHHHHHHHHHCCCccccccccCCCCEEEeCCCCCCCCCcchhHHHHHHHHHHHHHHHHhcCCccccCCccCC
Confidence 89999999999999999999999876544567899999999999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHhhchhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCCccccCChHHHHHHHHHHHHHHHcC
Q 003799 199 HGLPIELKVLQSLDEDAKKDLTPSKLRAKAAKFAKATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQG 278 (794)
Q Consensus 199 hGlpie~~~~k~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~lGi~~dwd~~~~T~d~~~~~~v~~~f~~L~~kG 278 (794)
||+|||.+++|.++...+.++++++|+++|++|++++++.|+++|++||+++||+++|+||||.|++.++++|.+|+++|
T Consensus 81 hGlpie~~vek~l~~~~~~~~~~~~f~~~c~~~~~~~~~~~~~~~~~lG~~~Dw~~~y~T~d~~~~~~v~~~f~~l~~~G 160 (974)
T PLN02843 81 HGLPIELKVLQSLDQEARKELTPIKLRAKAAKFAKKTVDTQRESFKRYGVWGDWENPYLTLDPEYEAAQIEVFGQMFLNG 160 (974)
T ss_pred CCcHHHHHHHHHhchhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCceecCCCCccCCHHHHHHHHHHHHHHHHCC
Confidence 99999999999987656778999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeecccCceeccCCCccccccccccCCcccccccceeEEeccCCCCcccccccccCCccceeccCCCCccccccEEEEC
Q 003799 279 YIYRGKKPVHWSPSSRTALAEAELEYPEGHVSRSIYAVFRMVSAPPSTSGLLNEFLPDLGLAVWTTTPWTVPANAAVAVN 358 (794)
Q Consensus 279 lIy~~~~~v~w~~~~~t~Lae~Evey~e~~~~~~~~v~F~l~~~~~~~~~~l~~~~~~~~l~iwTT~PwTi~~n~av~v~ 358 (794)
+||||.+||+|||+|+|+|||+||+|++++.++++||+|++.+....+...+.+..++.+++||||||||||||+|||||
T Consensus 161 lIyr~~kpV~Wcp~~~Talae~Evey~e~~~~~s~yv~f~~~~~~~~~~~~~~~~~~~~~lviwTTtPwTlpan~AiaVn 240 (974)
T PLN02843 161 YIYRGRKPVHWSPSSRTALAEAELEYPEGHVSKSIYVAFPVVSPSETSPEELEEFLPGLSLAIWTTTPWTMPANAAVAVN 240 (974)
T ss_pred CEEecceeeeecCCCCCcchHhHhcccCCccCceEEEEEEecCCccccccccccccccceEEEEeCcchhhccCcEEEEC
Confidence 99999999999999999999999999877899999999999753211111111111236899999999999999999999
Q ss_pred CCcceeeeeecccccCCCCCcCCCCCCCCCcccCCcceEeeecccchHHHHHhcCCceEEEeeeccCcccCCeeecCCCC
Q 003799 359 AKLQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFIIVASDLVPTLEAKWGTKLVIKKTLAGSDLENCRYVHPVDN 438 (794)
Q Consensus 359 p~~~Y~~v~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~G~~L~g~~~~~Pl~~ 438 (794)
|+++|++++.++...|....+.+.....|..+..++++.+||++++++.+.+.++.+++++++++|++|+|++|.||+++
T Consensus 241 P~~~Y~~v~~~~~~~d~r~~~~~~~~~~~~~~~~~~~~~~iva~~l~~~~~~~~~~~~~~~~~~~g~~L~g~~~~~P~~~ 320 (974)
T PLN02843 241 DKLQYSVVEVQSFSEDESTSGGNKKKRPGNVLKEQQKLFLIVATDLVPALEAKWGVKLVVLKTFPGSDLEGCRYIHPLYN 320 (974)
T ss_pred CCCceEEEEeccccccccccccccccccccccccccCceEEeHHHHHHHHHHhhCCceEEEeeechHHcCCCEEECCCCC
Confidence 99999999876433333333333444566666665568899999999999988887899999999999999999999999
Q ss_pred CcccEEeccCcccccCCCCceeecCCCChhhHHHHHHhCCCccccCCCCCccccccCCCCCccccccchHHHHHHHHhcC
Q 003799 439 RQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPILSPVDDEGKFTEEAGKFSGLDVLGDGNVAVVKYLDEQM 518 (794)
Q Consensus 439 ~~~pvvi~~~~V~~~~GTG~Vh~aPaHg~~D~~~~~~~gl~i~~~vd~~G~~~~~~~~~~G~~v~~ea~~~ii~~L~~~g 518 (794)
+++|++++++||++++|||+||+|||||++||+++++|||+++++||++|+|+++.|+|.|+.|+.+||+.|++.|++.|
T Consensus 321 ~~~pii~~~~~V~~~~GTG~Vh~aPaHg~~Dy~~~~~~~l~~~~~vd~~G~~~~~~~~~~G~~v~~~a~~~Ii~~L~~~g 400 (974)
T PLN02843 321 RESPVVIGGDYITTESGTGLVHTAPGHGQEDYITGLKYGLPLLSPVDDAGKFTEEAGQFSGLSVLGEGNAAVVEALDEAG 400 (974)
T ss_pred CceeEEecCCccCCCCCCCeEEeCCCCCHHHHHHHHHcCCCcccccCCCceEccCCcccCCcEehhcchHHHHHHHHHCC
Confidence 99999777999999999999999999999999999999999999999999999998999999997689999999999999
Q ss_pred CcccccccccccccccCCCCcEEEcccCccccchhhHHHHHHhhhcCeeecCCC--------------------------
Q 003799 519 SLIMEEPYEHKYPYDWRTKKPTIFRATEQWFASVEGFRQAAMDAIGQVKWVPPQ-------------------------- 572 (794)
Q Consensus 519 ~l~~~~~~~h~yp~~WRt~~pii~r~t~QWfi~~~~~~~~~l~~i~~v~~~P~~-------------------------- 572 (794)
++++.+.+.|+|||||||++|||+|+++|||++++.+|+++++++++|+|+|++
T Consensus 401 ~l~~~e~~~H~yp~cwR~~~pvi~r~t~QWFi~~~~~k~~al~~~~~v~~~P~~~~~r~~~~i~~~~DWcISRQr~WG~p 480 (974)
T PLN02843 401 SLLMEEAYGHKYPYDWRTKKPTIFRATEQWFASVEGFRQAALDAIDKVKWIPAQGENRIRAMVSGRSDWCISRQRTWGVP 480 (974)
T ss_pred CeeeeeeecCCCCccCCCCCeEEEEecCceeEeCHHHHHHHHHHHhccEEEChHHHHHHHHHHhcCcceeeeeccccccE
Confidence 999999999999999999999999999999999999999999999999999996
Q ss_pred --------------------------------------------------------------------------------
Q 003799 573 -------------------------------------------------------------------------------- 572 (794)
Q Consensus 573 -------------------------------------------------------------------------------- 572 (794)
T Consensus 481 IP~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~w~~~~~~~l~p~~~~~~~~~~~k~~DvlDvWFdSg~~~~~~~~~~~~ 560 (974)
T PLN02843 481 IPVFYHVETKEPLMNEETIAHVKSIVAQKGSDAWWYMDVEDLLPEKYRDKASDYEKGTDTMDVWFDSGSSWAGVLGSREG 560 (974)
T ss_pred EEEEEEcCCCCEeechhhHHHHHHHHHhhCCcccccCCHHHhCcccccCchhhhEecccccccchhcCCChHHHhccccc
Confidence
Q ss_pred ----------------------------------------------------------------CCC---------CCCC
Q 003799 573 ----------------------------------------------------------------EAP---------GYGA 579 (794)
Q Consensus 573 ----------------------------------------------------------------~~~---------~yGa 579 (794)
+++ +||+
T Consensus 561 ~~~PaDl~~eG~Di~rgWf~s~l~~~~~~~g~~Pfk~v~~HG~vld~~G~KMSKSlGNvI~p~~vi~~~~~~~~~~~yGa 640 (974)
T PLN02843 561 LSYPADLYLEGSDQHRGWFQSSLLTSVATKGKAPYKSVLTHGFVLDEKGFKMSKSLGNVVDPRLVIEGGKNQKQEPAYGA 640 (974)
T ss_pred cCCCceeeeeeccccchHHHHHHHHHHHhcCCCccceEEEeccEECCCCCCcCCCCCCcCCHHHHHhhccccccccccCh
Confidence 223 6999
Q ss_pred chhhhhhhhcCCCCceecChHHHHHHHHHHHHHHhHHHHHHhcccCCCCCCCcCCCCCChhhHHHHHHHHHHHHHHHHHH
Q 003799 580 DVLRLWVSSVDYTGDVMIGPQVLRQMSDIYRKLRGTLRYLLGNLHDWRVGNSISYDDLPMIDQYALFQLENIVKNIRESY 659 (794)
Q Consensus 580 D~lRl~las~~~~~Di~~s~~~l~~~~~~~~kl~Nt~rfll~nl~~~~~~~~~~~~~l~~~D~~il~~l~~lv~~v~~~~ 659 (794)
|+||||+++++|++|++|+++.++++.+.++||||++||+++|+.+|.+...++..++..+|+|+++++++++++++++|
T Consensus 641 D~lR~~l~~~~~~~d~~~s~~~l~~~~~~~~kl~n~~rf~lgnl~~~~~~~~~~~~~~~~~D~wiLskL~~li~~v~~ay 720 (974)
T PLN02843 641 DVLRLWVASVDYTGDVLIGPQILKQMSDIYRKLRGTLRYLLGNLHDWKPDNAVPYEDLPSIDKYALFQLENVVNEIEESY 720 (974)
T ss_pred HHHHHHHHhcccCCCceeCHHHHHHHHHHHHHHHHHHHHHHhCccCCCcccccCccccCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998764334455677889999999999999999999
Q ss_pred hcccHHHHHHHHHHHHHHhhhHHHHHhhccccccCCCChHhHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhCCCCcc
Q 003799 660 ESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYT 739 (794)
Q Consensus 660 e~y~f~~ai~~l~~f~~~~lsn~Yle~~K~rly~~~~d~~~r~s~~~vL~~iL~~l~~lLaP~~P~~aEEiw~~L~~~~~ 739 (794)
++|+|++|++.+++|++.++||+||+.+|||+|++..++..|++++++|+.+|+.+++||+|||||+|||||++|+..
T Consensus 721 e~y~f~~A~~~i~~f~~~dlsn~Yie~~Kprly~~~~~~~~r~~~qtvL~~iLe~l~~LLaPimPf~aEEiw~~L~~~-- 798 (974)
T PLN02843 721 DNYQFFKIFQILQRFTIVDLSNFYLDVAKDRLYVGGTTSFTRRSCQTVLAAHLLSLLRAIAPILPHLAEDAWQNLPFQ-- 798 (974)
T ss_pred HccCHHHHHHHHHHHHHHHHhHHHHHhcchhhhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcccc--
Confidence 999999999999999999999999999999999987777778899999999999999999999999999999999742
Q ss_pred ccCCCCCCceeecCCCCCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhcCC
Q 003799 740 LEDGSAAEFVFESKWPVLDEKWRTFPVGEIYFWGKILEVIVVVTYLNETEGF 791 (794)
Q Consensus 740 ~~~~~~~~sV~~~~wP~~~e~~~~~~~~~~~~~~~i~~lR~~v~~~~e~~~~ 791 (794)
.++...+|||++.||++++.+.+.++.....|+.++++|.+|++++|.+|-
T Consensus 799 -~~~~~~~sv~~~~~P~~~~~~~~~~~~~~~~~~~~~~~r~~v~~~l~~~r~ 849 (974)
T PLN02843 799 -EDGSAAESVFEAGWPTPNEEWLSFPAEDVDFWSLLLEVRDEVNKVLESARN 849 (974)
T ss_pred -ccCCCCCceEecCCCCCchhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 011113699999999998887654345566799999999999999998874
No 3
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=100.00 E-value=2.9e-138 Score=1263.12 Aligned_cols=654 Identities=41% Similarity=0.716 Sum_probs=595.3
Q ss_pred ccccccccCCCccCCCCCCcccccHHHHHHHhhcCcchhccc-cCCCCcEEEEcCCCCCCCcccchHHHhHHHHHHHHHH
Q 003799 104 GRYKHTVDLPKTTFGMRANALVREPEIHKLWDDHQVFLRVAD-KNDGENFVLHDGPPYANGNLHMGHALNKILKDIINRY 182 (794)
Q Consensus 104 ~~~~~t~~lp~t~f~~r~n~~~~E~~~~~~W~~~~~~~~~~~-~~~~~~f~i~~~pPy~nG~lHiGHa~~~il~Dii~R~ 182 (794)
.+|++|||||+|.||||+|+..+|++||++|+++++|++..+ +.++++|+||+|||||||.||||||+|++++|+++||
T Consensus 7 ~~y~~tl~lp~t~f~m~~~~~~~E~~~~~~W~~~~~y~~~~~~~~~~~~f~l~dgPPyanG~lHiGHaln~~lkDii~Ry 86 (961)
T PRK13804 7 MDYKKTLNLPQTAFPMRAGLPQKEPEIQARWEEIDLYKKLREQAKGRPKFVLHDGPPYANGNIHIGHALNKILKDVIVRS 86 (961)
T ss_pred CchHhhcCCCCCCCCCCCChHHhHHHHHHHHHHCCCccccccccCCCCcEEEeCCCCCCCCCccHHHHHHHHHHHHHHHH
Confidence 379999999999999999999999999999999999998754 3467899999999999999999999999999999999
Q ss_pred HHhCCCeeEEeccccCCCchHHHHHHhhchh--hhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCCccccCC
Q 003799 183 KLLQNYKVRYVPGWDCHGLPIELKVLQSLDE--DAKKDLTPSKLRAKAAKFAKATVKAQMASFKRYGVWADWNNPYLTLD 260 (794)
Q Consensus 183 ~r~~G~~V~~~~G~D~hGlpie~~~~k~~~~--~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~lGi~~dwd~~~~T~d 260 (794)
+||+||+|+|+|||||||+|||.+++|.++. ..+.++++.+|+++|++||.++++.|+++|++||+++||+++|.|||
T Consensus 87 ~rm~G~~v~~~pGwD~hGlPiE~~vek~~~~~~~~~~~~~~~~f~~~c~~~a~~~i~~~~~~~~rlG~~~Dw~~~y~T~d 166 (961)
T PRK13804 87 KQMLGFDANYVPGWDCHGLPIEWKIEEKYRAKGKNKDEVPVAEFRKECREYALSWIDVQREEFKRLGVLGDWDNPYTTMD 166 (961)
T ss_pred HHhcCCcccCCCCcCCCCcHHHHHHHHhhhhcCCChHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCceecCCCCcCcCC
Confidence 9999999999999999999999999988732 22456899999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHcCCeeecccCceeccCCCccccccccccCCcccccccceeEEeccCCCCcccccccccCCccce
Q 003799 261 PEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAEAELEYPEGHVSRSIYAVFRMVSAPPSTSGLLNEFLPDLGLA 340 (794)
Q Consensus 261 ~~~~~~v~~~f~~L~~kGlIy~~~~~v~w~~~~~t~Lae~Evey~e~~~~~~~~v~F~l~~~~~~~~~~l~~~~~~~~l~ 340 (794)
|.|++.++++|.+|+++|+|||+.+||+|||.|+|+|||+||||.+ +.++++||+|++.+... . + ..+.+++
T Consensus 167 ~~y~~~~~~~F~~l~~kGliyr~~kpV~Wcp~~~TaLa~~Evey~~-~~s~~~~v~F~~~~~~~-~---~---~~~~~lv 238 (961)
T PRK13804 167 FHAEARIAREFGKFAAKGQLYRGSKPVMWSVVERTALAEAEIEYHD-IESDTIWVKFPVKDGKG-I---L---DSGTYVV 238 (961)
T ss_pred HHHHHHHHHHHHHHHHCCCEEeCCcceecCCCCCCCccchhccccc-ccCceEEEEEEecCccc-c---c---CCCCeEE
Confidence 9999999999999999999999999999999999999999999975 89999999999964211 0 1 1246899
Q ss_pred eccCCCCccccccEEEECCCcceeeeeecccccCCCCCcCCCCCCCCCcccCCcceEeeecccchHHHHHhcCCc-eEEE
Q 003799 341 VWTTTPWTVPANAAVAVNAKLQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFIIVASDLVPTLEAKWGTK-LVIK 419 (794)
Q Consensus 341 iwTT~PwTi~~n~av~v~p~~~Y~~v~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~iv~~~~~~~~~~~~~~~-~~~~ 419 (794)
||||||||||||+||||||+++|++++..+.. ...|- ..++.+||++++++++..+.+.+ ++++
T Consensus 239 iwTTtPwTl~an~aiav~p~~~Y~~v~~~~~~----------~~~~~-----~~~e~~iva~~~~~~~~~~~~~~~~~~~ 303 (961)
T PRK13804 239 IWTTTPWTIPANRAISYSPDIEYGLYEVTGAE----------NDFWA-----KPGERLVVADALAESVAKKAGVESFERL 303 (961)
T ss_pred EEeCCchhhhhCeEEEECCCCceEEEEecccc----------ccccc-----cCCcEEEeHHHHHHHHHHHhCCCCcEEE
Confidence 99999999999999999999999999864200 00000 01368999999999999887764 7899
Q ss_pred eeeccCcccCCeeecCCCCC-----cccEEeccCcccccCCCCceeecCCCChhhHHHHHHhCC-CccccCCCCCccccc
Q 003799 420 KTLAGSDLENCRYVHPVDNR-----QCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGL-PILSPVDDEGKFTEE 493 (794)
Q Consensus 420 ~~~~G~~L~g~~~~~Pl~~~-----~~pvvi~~~~V~~~~GTG~Vh~aPaHg~~D~~~~~~~gl-~i~~~vd~~G~~~~~ 493 (794)
++++|++|+|++|.||++++ ++|| ++++||+.+.|||+||+|||||++||.++++||| |++++||++|+|+++
T Consensus 304 ~~~~g~~L~g~~~~~P~~~~~~~~~~~pv-i~~~~V~~~~GTG~Vh~aPahg~~Dy~~~~~~~l~~~~~~vd~~G~~~~~ 382 (961)
T PRK13804 304 ADVKGEDLEKIVCAHPLDGLDGYEFEVPV-LDGDHVTDDAGTGFVHTAPGHGREDFNVWMKYGRTEIPVTVDEDGFYTEN 382 (961)
T ss_pred EEEEhhhccCCEEECCCCCcccccceeEE-EecCccCCCCCCceEEeCCCCCHHHHHHHHHcCCCcccccCCCCeEEccC
Confidence 99999999999999999998 7898 7899999999999999999999999999999999 999999999999988
Q ss_pred cCC--------CCCccccccchHHHHHHHHhcCCcccccccccccccccCCCCcEEEcccCccccchhh-------HHHH
Q 003799 494 AGK--------FSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTKKPTIFRATEQWFASVEG-------FRQA 558 (794)
Q Consensus 494 ~~~--------~~G~~v~~ea~~~ii~~L~~~g~l~~~~~~~h~yp~~WRt~~pii~r~t~QWfi~~~~-------~~~~ 558 (794)
+++ |.|+.+. +|++.|++.|++.|++++.+.|.|+||||||||+|||+|+++|||++++. +|++
T Consensus 383 ~~~~~g~~v~~~~G~~~~-ea~~~Ii~~L~~~g~l~~~~~~~h~yp~~wR~~~pii~r~t~QWFi~~~~~~~~~~~~k~~ 461 (961)
T PRK13804 383 APGFGGARVIDDEGKKYG-DANKAVIEKLIEAGLLLARGRLKHSYPHSWRSKKPVIFRNTPQWFISMDKDLGDGTTLRSR 461 (961)
T ss_pred CCccccccccccCCcchh-hhhHHHHHHHHhCCCcccccceecCCCccCCCCCeEEEeccccccEEcCCcccchHHHHHH
Confidence 776 8888885 99999999999999999999999999999999999999999999999998 9999
Q ss_pred HHhhhcCeeecCCC------------------------------------------------------------------
Q 003799 559 AMDAIGQVKWVPPQ------------------------------------------------------------------ 572 (794)
Q Consensus 559 ~l~~i~~v~~~P~~------------------------------------------------------------------ 572 (794)
+++++++|+|+|++
T Consensus 462 al~~i~~v~~~P~~~~~r~~~~i~~~~DWcISRQR~WG~PIP~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~w~~~~~~~ 541 (961)
T PRK13804 462 ALDAIDKTRFVPAAGQNRLYNMIEDRPDWVISRQRAWGVPIPIFVAEDGEILMDEEVNARIADAFEEEGADAWFAEGAKE 541 (961)
T ss_pred HHHHHhccEEECHHHHHHHHHHHhcCccceeeeeccCCceeeEEEcCCCCEeccHHHHHHHHHHHHhcCCccccccCHHH
Confidence 99999999999986
Q ss_pred --------------------------------------------------------------------------------
Q 003799 573 -------------------------------------------------------------------------------- 572 (794)
Q Consensus 573 -------------------------------------------------------------------------------- 572 (794)
T Consensus 542 ~~~~~~~~~~~~~r~~DvlDvWFdSg~s~~~~~~~~~~~~~PaD~~~eG~Di~rgWF~s~ll~s~~~~~~~P~k~V~~HG 621 (961)
T PRK13804 542 RFLGGFHPNGEFTKVTDILDVWFDSGSTHAFVLEDRPDLKWPADLYLEGSDQHRGWFNSSLLESCGTRGRAPYKAVLTHG 621 (961)
T ss_pred hcCcccCcccceEecCcceeeeecCCCCccccccCCcccCCCceEEEEEcccccHHHHHHHHHHHHhcCCCChhhEEEec
Confidence
Q ss_pred ----------------------CCCCCCCchhhhhhhhcCCCCceecChHHHHHHHHHHHHHHhHHHHHHhcccCCCCCC
Q 003799 573 ----------------------EAPGYGADVLRLWVSSVDYTGDVMIGPQVLRQMSDIYRKLRGTLRYLLGNLHDWRVGN 630 (794)
Q Consensus 573 ----------------------~~~~yGaD~lRl~las~~~~~Di~~s~~~l~~~~~~~~kl~Nt~rfll~nl~~~~~~~ 630 (794)
++++||||++|||++++++++|++|++++++++.+.+++|||++||+++|+.+|.+..
T Consensus 622 ~vld~~G~KMSKSlGNvIdP~~ii~~yGaD~lRl~lls~~~~~D~~fs~~~l~~~~~~~~kL~N~~rf~l~nl~~~~~~~ 701 (961)
T PRK13804 622 FTLDEKGEKMSKSLGNTVSPQDVIKQSGADILRLWVASVDYSDDQRIGKEILKQVSETYRKLRNTLRWLLGNLAHFDPGE 701 (961)
T ss_pred cEECCCCCCccCCCCCcCCHHHHHHhcCHHHHHHHHHhCCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHhccccCCccc
Confidence 3358999999999999999999999999999999999999999999999999987652
Q ss_pred -CcCCCCCChhhHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhHHHHHhhccccccCCCChHhHHHHHHHHH
Q 003799 631 -SISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRLYTGGTTSFTRRSCQTVLS 709 (794)
Q Consensus 631 -~~~~~~l~~~D~~il~~l~~lv~~v~~~~e~y~f~~ai~~l~~f~~~~lsn~Yle~~K~rly~~~~d~~~r~s~~~vL~ 709 (794)
.++..++..+|+|+++++++++++++++|++|+|++|++.+++|++++|||+|++.+|||+|++..++..|++++++|+
T Consensus 702 ~~~~~~~~~~~D~wil~~l~~~~~~v~~~~e~y~f~~a~~~l~~f~~~~lsn~Yle~~K~rl~~~~~~~~~r~~~~~vL~ 781 (961)
T PRK13804 702 DVVAYADLPELERYMLHRLNELDGLVREAYDAYDFKRIYKALVNFVNVDLSAFYFDIRKDALYCDAPSSLRRRAAQTVFY 781 (961)
T ss_pred ccCChhhcCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcCCCCcHHHHHHHHHHH
Confidence 2344567789999999999999999999999999999999999998889999999999999998888778889999999
Q ss_pred HHHHHHHHHhccccchHHHHHHHhCCCCccccCCCCCCceeecCCCCCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhc
Q 003799 710 AHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAAEFVFESKWPVLDEKWRTFPVGEIYFWGKILEVIVVVTYLNETE 789 (794)
Q Consensus 710 ~iL~~l~~lLaP~~P~~aEEiw~~L~~~~~~~~~~~~~sV~~~~wP~~~e~~~~~~~~~~~~~~~i~~lR~~v~~~~e~~ 789 (794)
.+|+.+++||+|||||+|||||++|+.. ..+|||++.||++++.+.+ +++++.|+.+.++|..|++++|.+
T Consensus 782 ~il~~l~~lLaPi~P~~aEeiw~~L~~~-------~~~sv~l~~wP~~~~~~~d--~~~~~~~~~~~~~r~~v~~~le~~ 852 (961)
T PRK13804 782 EIFVRLTKWLAPILPFTAEEAWLYRYPE-------EEVSVHLEQFPETPAFWRD--DALAEKWRKFRAVRDVVTGALEEE 852 (961)
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHhcccC-------CCCceEecCCCCCcchhCC--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999841 1369999999999887765 677888999999999999999987
Q ss_pred CC
Q 003799 790 GF 791 (794)
Q Consensus 790 ~~ 791 (794)
|-
T Consensus 853 R~ 854 (961)
T PRK13804 853 RA 854 (961)
T ss_pred HH
Confidence 53
No 4
>KOG0433 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.5e-138 Score=1145.67 Aligned_cols=659 Identities=44% Similarity=0.710 Sum_probs=612.5
Q ss_pred hhhhhhhcchhhcccccccccCCCccCCCCCCcccccHHHHHHHhhcCcchhccccCCCCcEEEEcCCCCCCCcccchHH
Q 003799 91 AAKKAAEGEKKEEGRYKHTVDLPKTTFGMRANALVREPEIHKLWDDHQVFLRVADKNDGENFVLHDGPPYANGNLHMGHA 170 (794)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~t~~lp~t~f~~r~n~~~~E~~~~~~W~~~~~~~~~~~~~~~~~f~i~~~pPy~nG~lHiGHa 170 (794)
+.++.+...+.+...|+.|+++||| |+|.|.+.++.+..+.|+...+.......+++..|+++| +||.||||||
T Consensus 2 ~fk~~s~~~~~e~~~ys~T~~lpKt--~v~~Ns~gr~~q~~evi~~~~~~~~qls~~q~~~f~L~d----anG~lhlgha 75 (937)
T KOG0433|consen 2 SFKDFSFEFNGEPIHYSITSHLPKT--LVHFNSTGRIGQVIEVIQPPEILSSQLSDQQRVEFELKD----ANGNLHLGHA 75 (937)
T ss_pred ChhhcchhhcCCcccceeecCCCCC--ccccccccchHHHHHHhCChHHHHHHHhhccCceEEEec----cCCCccchHH
Confidence 3455566666778889999999999 999999999999999999988888777777899999999 9999999999
Q ss_pred HhHHHHHHHHHHHHhCCCeeEEeccccCCCchHH-HHHHhhchhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Q 003799 171 LNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIE-LKVLQSLDEDAKKDLTPSKLRAKAAKFAKATVKAQMASFKRYGVW 249 (794)
Q Consensus 171 ~~~il~Dii~R~~r~~G~~V~~~~G~D~hGlpie-~~~~k~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~lGi~ 249 (794)
+|+|++||+.||+.++|.+|+|+|||||||+||| .++.+.+... ...++|.|+|++++.||.+.++.|++.|+||||+
T Consensus 76 lnkILkdIinr~~laqg~~alyvpGwDchGLPiEs~kalssl~~~-~~~~s~leiR~~Ar~fA~~AIk~Q~e~F~r~gv~ 154 (937)
T KOG0433|consen 76 LNKILKDIINRILLAQGKSALYVPGWDCHGLPIESTKALSSLTES-EGSRTPLEIRAKARIFADEAIKKQMEAFRRWGVT 154 (937)
T ss_pred HHHHHHHHHHHHHHhcCceeccCCCCCcCCCchHHHHHhhhhhhc-cccCCcHHHHHHHHHHHHHHHHHHHHHHHHheee
Confidence 9999999999999999999999999999999999 6888877644 3678999999999999999999999999999999
Q ss_pred cCCCCccccCChHHHHHHHHHHHHHHHcCCeeecccCceeccCCCccccccccccCCcccccccceeEEeccCCCCcccc
Q 003799 250 ADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAEAELEYPEGHVSRSIYAVFRMVSAPPSTSGL 329 (794)
Q Consensus 250 ~dwd~~~~T~d~~~~~~v~~~f~~L~~kGlIy~~~~~v~w~~~~~t~Lae~Evey~e~~~~~~~~v~F~l~~~~~~~~~~ 329 (794)
.||.++|.|+||.|+..+.++|.+|++||||||+.+||||+|+++|||||+|+||+++|.++++|++|++.++... ...
T Consensus 155 aDW~n~Y~T~~~~ye~aQL~iF~~lyekgLvyR~~KPVyWSpSSRTALAEaELEYn~nH~S~S~Y~~F~L~~~S~~-~~~ 233 (937)
T KOG0433|consen 155 ADWENPYVTKSPSYEAAQLDIFAKLYEKGLVYRSFKPVYWSPSSRTALAESELEYNDNHQSTSAYFRFKLINFSSS-AHS 233 (937)
T ss_pred ccCCCceeecChHHHHHHHHHHHHHHhccceeccCCcceecCcchhhhhhhhccCCcCCcceeEEEEEeccCCccc-ccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999876543 112
Q ss_pred cccccCCccceeccCCCCccccccEEEECCCcceeeeeecccccCCCCCcCCCCCCCCCcccCCcceEeeecccchHHHH
Q 003799 330 LNEFLPDLGLAVWTTTPWTVPANAAVAVNAKLQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFIIVASDLVPTLE 409 (794)
Q Consensus 330 l~~~~~~~~l~iwTT~PwTi~~n~av~v~p~~~Y~~v~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~iv~~~~~~~~~ 409 (794)
+....++++++||||||||||+|.||||||++.|++++.+.. ..++.++|+.++++++.
T Consensus 234 ~~~~~~~iyaLVWTTTPWTlPsN~Ai~~n~~~~Yslv~~~~~---------------------~~~~~ylvas~L~~~fe 292 (937)
T KOG0433|consen 234 EDSKIPQIYALVWTTTPWTLPSNNAISVNSAIQYSLVQFDNN---------------------PTSTFYLVASKLLEEFE 292 (937)
T ss_pred CCCccCcEEEEEEeCCCccccccceeeeccccceEEEEeccC---------------------CcceEEEEccchhhhhh
Confidence 233456799999999999999999999999999999998631 23578999999999999
Q ss_pred HhcCCceEEEeeeccCcccCCeeecCCC-CCcccEEeccCcccccCCCCceeecCCCChhhHHHHHHhCCCccccCCCCC
Q 003799 410 AKWGTKLVIKKTLAGSDLENCRYVHPVD-NRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPILSPVDDEG 488 (794)
Q Consensus 410 ~~~~~~~~~~~~~~G~~L~g~~~~~Pl~-~~~~pvvi~~~~V~~~~GTG~Vh~aPaHg~~D~~~~~~~gl~i~~~vd~~G 488 (794)
..++.+.+++++++|.+|+|++|.||+. +...|+ +.++||+.+.|||+||+|||||++||.++.++|||+.++||+.|
T Consensus 293 ~~~~~k~~i~~t~~g~~L~~~~Y~~pl~~~~~~P~-l~g~hVT~~~GTGLVHTAP~HG~eDYlv~l~~~l~~~s~VD~~G 371 (937)
T KOG0433|consen 293 KSSDRKCKIVGTVKGANLIGRRYKHPLHNELGLPI-LEGPHVTDTVGTGLVHTAPAHGFEDYLVAISKGLRVESFVDSRG 371 (937)
T ss_pred hhcCcceeeeeecchhhccCceecCcCccccCCcc-ccccceecCcccceeecCCCCChHHHHHHhhcCCCcccccCCCC
Confidence 9999999999999999999999999975 456888 67999999999999999999999999999999999999999999
Q ss_pred ccccccC-CCCCccccccchHHHHHHHHhcCCcccccccccccccccCCCCcEEEcccCccccchhhHHHHHHhhhcCee
Q 003799 489 KFTEEAG-KFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTKKPTIFRATEQWFASVEGFRQAAMDAIGQVK 567 (794)
Q Consensus 489 ~~~~~~~-~~~G~~v~~ea~~~ii~~L~~~g~l~~~~~~~h~yp~~WRt~~pii~r~t~QWfi~~~~~~~~~l~~i~~v~ 567 (794)
+||.++| .+.|+.|++|+++.|+.+|. ..+++.++|.|+||||||||+|+|+|+++|||++++++|..|++++++|+
T Consensus 372 ~yT~ea~~~l~Gk~VL~eG~k~vl~~l~--~~iv~~sky~HsYPYDWRTKKPvIiRAseQWFi~~e~~k~~A~~al~~Vk 449 (937)
T KOG0433|consen 372 CYTREAGHDLDGKEVLGEGQKIVLRLLN--HDIVHVSKYVHSYPYDWRTKKPVIIRASEQWFIDVEEIKKRASMALDDVK 449 (937)
T ss_pred ceecccccccccchhhccccHhHHHHHh--hhhhhhhcccccCCcccccCCceEEecchhheeeHHhhhhHHHHHHhhce
Confidence 9999988 89999999999999999999 78999999999999999999999999999999999999999999999999
Q ss_pred ecCCC---------------------------------------------------------------------------
Q 003799 568 WVPPQ--------------------------------------------------------------------------- 572 (794)
Q Consensus 568 ~~P~~--------------------------------------------------------------------------- 572 (794)
|+|..
T Consensus 450 ~~P~~~~~rl~~~~~~R~~WCISRQR~WGvPIP~ly~k~~~~~l~ns~~~~h~~~~~eqeGsD~Ww~~~~eellpe~~~~ 529 (937)
T KOG0433|consen 450 VAPGDSDLRLKQLVTTRPSWCISRQRVWGVPIPALYDKNGGSYLSNSLIEWHAKLTREQEGSDVWWEIDVEELLPEEEVR 529 (937)
T ss_pred eCCcchHHHHHHHHcCCCcceeeeccccCCcceeEEecCCCceeehHHHHHHHHHHHHHhCCcceEeCChhHhCcHhhhc
Confidence 99997
Q ss_pred --------------------------------------------------------------------------------
Q 003799 573 -------------------------------------------------------------------------------- 572 (794)
Q Consensus 573 -------------------------------------------------------------------------------- 572 (794)
T Consensus 530 e~~~~a~ey~kgtDimDVWFDSGssWs~v~~~~~~~~aDv~LEG~DQ~rGWFQSsLLTsvA~q~kAPYk~vivHGFtlDE 609 (937)
T KOG0433|consen 530 EIPDIASEYKKGTDIMDVWFDSGSSWSAVLDNEREHVADVYLEGVDQFRGWFQSSLLTSVAVQNKAPYKKVIVHGFTLDE 609 (937)
T ss_pred ccchhHHHhccCCceeeeEecCCCcceeecCCCCCcceeeEEecchhcchHHHHHHHHHHHHhccCCchheeeeeeEecC
Confidence
Q ss_pred -----------------------CCCCCCCchhhhhhhhcCCCCceecChHHHHHHHHHHHHHHhHHHHHHhcccCCCCC
Q 003799 573 -----------------------EAPGYGADVLRLWVSSVDYTGDVMIGPQVLRQMSDIYRKLRGTLRYLLGNLHDWRVG 629 (794)
Q Consensus 573 -----------------------~~~~yGaD~lRl~las~~~~~Di~~s~~~l~~~~~~~~kl~Nt~rfll~nl~~~~~~ 629 (794)
..|.||+|+||||++++++++|+.+|+++|.++.+.+.|+|||+||++||+++|.+.
T Consensus 610 ~G~KMSKSlGNVidP~~v~~G~~k~payGaD~LR~WVA~~~~t~d~~iGp~il~qv~e~l~K~R~T~RfllGnl~d~~~~ 689 (937)
T KOG0433|consen 610 NGNKMSKSLGNVVDPTMVTDGSLKQPAYGADGLRFWVAGSENTGESKIGPKILDQVDEKLIKFRNTFRFLLGNLQDFDGK 689 (937)
T ss_pred CccchhhcccCcCCHHHHhCCcccCCCccccceeeeeecccccCceecCHHHHHHHHHHHHHHHhHHHHHhhcccccCCc
Confidence 235699999999999999999999999999999999999999999999999999988
Q ss_pred -CCcCCCCCChhhHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhHHHHHhhccccccCCCChHhHHHHHHHH
Q 003799 630 -NSISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRLYTGGTTSFTRRSCQTVL 708 (794)
Q Consensus 630 -~~~~~~~l~~~D~~il~~l~~lv~~v~~~~e~y~f~~ai~~l~~f~~~~lsn~Yle~~K~rly~~~~d~~~r~s~~~vL 708 (794)
..+|..++.-+|+++|.+|+++++++++.|++|+|+++++.|..|++++||++|++++||||||+..++..|+++|++|
T Consensus 690 ~~~~p~~dl~~iDq~~L~ql~~~~~~i~e~Y~~Y~f~kVv~~lq~F~~~~lSa~YfdivKDRLY~~~~~s~~rrs~QttL 769 (937)
T KOG0433|consen 690 QVKFPLKDLRYIDQYMLQQLDAIVKRIIELYNDYKFRKVVNDLQQFLQRNLSAFYFDIVKDRLYCDKVGSESRRSAQTTL 769 (937)
T ss_pred cccccchhhhhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhHHHHHHHhhhhhcCCCCcHHHHHHHHHH
Confidence 7889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccccchHHHHHHHhCCCCccccCCCCCCceeecCCCCCCcccCCCChhHHHHHHHHHHHHHHHHHHHhh
Q 003799 709 SAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAAEFVFESKWPVLDEKWRTFPVGEIYFWGKILEVIVVVTYLNET 788 (794)
Q Consensus 709 ~~iL~~l~~lLaP~~P~~aEEiw~~L~~~~~~~~~~~~~sV~~~~wP~~~e~~~~~~~~~~~~~~~i~~lR~~v~~~~e~ 788 (794)
+++|.+++++++||+||++||+||+|+.. .+-+|...||..++.|.....++...|..++++|.+....++.
T Consensus 770 ~h~l~~l~~~iaPIlP~LaeEvwq~lP~~--------~~~~f~~k~~~l~s~~~~~~~~~~~~~~~vl~~~~~~~~~l~l 841 (937)
T KOG0433|consen 770 HHLLHNLAHIISPILPHLAEEVWQHLPGS--------HEKIFRLKWEDLHSGLLTPHDQLSKHMKFVLEVRNELESTLGL 841 (937)
T ss_pred HHHHHHHHHHHccccHHHHHHHHHhCCCC--------CCcccccCccccchhhcCchhHHHHHHHHHHHHHHhHHHHHHh
Confidence 99999999999999999999999999853 1239999999999999886555555799999999999877765
Q ss_pred c
Q 003799 789 E 789 (794)
Q Consensus 789 ~ 789 (794)
+
T Consensus 842 a 842 (937)
T KOG0433|consen 842 A 842 (937)
T ss_pred h
Confidence 4
No 5
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=3.7e-137 Score=1251.14 Aligned_cols=643 Identities=47% Similarity=0.849 Sum_probs=594.7
Q ss_pred cccccccCCCccCCCCCCcccccHHHHHHHhhcCcchhccc-cCCCCcEEEEcCCCCCCCcccchHHHhHHHHHHHHHHH
Q 003799 105 RYKHTVDLPKTTFGMRANALVREPEIHKLWDDHQVFLRVAD-KNDGENFVLHDGPPYANGNLHMGHALNKILKDIINRYK 183 (794)
Q Consensus 105 ~~~~t~~lp~t~f~~r~n~~~~E~~~~~~W~~~~~~~~~~~-~~~~~~f~i~~~pPy~nG~lHiGHa~~~il~Dii~R~~ 183 (794)
+|++|||||+|.||||+|+..+|++||++|+++++|++..+ +.++++|+|++|||||||.||||||+|++++|+++||+
T Consensus 3 ~y~~tl~lp~t~f~m~~~l~~~E~~~~~~W~~~~~~~~~~~~~~~~~~f~i~~~pPyanG~lHiGHa~~~~~~Dii~Ry~ 82 (912)
T PRK05743 3 DYKDTLNLPKTDFPMRANLPKREPEILKRWEENDLYQKIREANKGKPKFILHDGPPYANGDIHIGHALNKILKDIIVKSK 82 (912)
T ss_pred ChHhhcCCCCCCCCCCCChHHhhHHHHHHHHHCCCccccchhcCCCCcEEEeCCCCCCCCCccHHHHHHHHHHHHHHHHH
Confidence 69999999999999999999999999999999999998643 35678899999999999999999999999999999999
Q ss_pred HhCCCeeEEeccccCCCchHHHHHHhhchhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCCccccCChHH
Q 003799 184 LLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKAAKFAKATVKAQMASFKRYGVWADWNNPYLTLDPEY 263 (794)
Q Consensus 184 r~~G~~V~~~~G~D~hGlpie~~~~k~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~lGi~~dwd~~~~T~d~~~ 263 (794)
||+||+|+|+|||||||+|||.+++|.++.. +.++++++|+++|++|++++++.|+++|++||++.||+++|.|+||.|
T Consensus 83 rm~G~~v~~~~G~D~~Glpie~~~ek~l~~~-~~~~~~~~f~~~c~~~~~~~~~~~~~~~~~lG~~~dw~~~~~T~~~~~ 161 (912)
T PRK05743 83 TMSGFDAPYVPGWDCHGLPIELKVEKKLGKK-GKKLSAAEFRKKCREYALEQVDIQREDFKRLGVLGDWDNPYLTMDFKY 161 (912)
T ss_pred HccCCcccCCCCcCCCccHhHHHHHHHcCCc-cccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccCCCCcCCCCHHH
Confidence 9999999999999999999999999887633 568899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCeeecccCceeccCCCccccccccccCCcccccccceeEEeccCCCCcccccccccCCccceecc
Q 003799 264 EAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAEAELEYPEGHVSRSIYAVFRMVSAPPSTSGLLNEFLPDLGLAVWT 343 (794)
Q Consensus 264 ~~~v~~~f~~L~~kGlIy~~~~~v~w~~~~~t~Lae~Evey~e~~~~~~~~v~F~l~~~~~~~~~~l~~~~~~~~l~iwT 343 (794)
++.++++|.+|+++|+|||+.+||+|||.|+|+|||+||+|++ +.++++||+|++.+.. +...+.+.+++|||
T Consensus 162 ~~~v~~~f~~l~~~Gliy~~~~~v~w~p~~~TaLad~Evey~~-~~s~~~yv~f~l~~~~------~~~~~~~~~l~i~T 234 (912)
T PRK05743 162 EANIIRALGKMAKKGYLYKGLKPVYWCPDCGSALAEAEVEYHD-KTSPSIYVAFPVVDGK------LAAAFKDASLVIWT 234 (912)
T ss_pred HHHHHHHHHHHHHCCCEEecceeEecCCCcCCCchhhHhhccc-ccCceEEEEEEecCcc------hhcccCCCEEEEEe
Confidence 9999999999999999999999999999999999999999976 7899999999996521 10001346899999
Q ss_pred CCCCccccccEEEECCCcceeeeeecccccCCCCCcCCCCCCCCCcccCCcceEeeecccchHHHHHhcCC-ceEEEeee
Q 003799 344 TTPWTVPANAAVAVNAKLQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFIIVASDLVPTLEAKWGT-KLVIKKTL 422 (794)
Q Consensus 344 T~PwTi~~n~av~v~p~~~Y~~v~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~iv~~~~~~~~~~~~~~-~~~~~~~~ 422 (794)
|||||||||+||||||+++|+++++. ++.+|+++++++++....+. ++++++++
T Consensus 235 TrP~Tl~~n~aiav~p~~~Y~~~~~~-------------------------~~~~i~a~~~~~~~~~~~~~~~~~~~~~~ 289 (912)
T PRK05743 235 TTPWTLPANQAIAVHPEFDYVLVEVE-------------------------GEKLIVAKDLVESVLERFGWEDYEVLATF 289 (912)
T ss_pred CCChhhhhCeEEEECCCCeeEEEEcC-------------------------CCEEEEeHHhHHHHHHhhCCcceEEEEEe
Confidence 99999999999999999999999864 35799999999999988776 48899999
Q ss_pred ccCcccCCeeecCCCCCcccEEeccCcccccCCCCceeecCCCChhhHHHHHHhCCCccccCCCCCccccccCCCCCccc
Q 003799 423 AGSDLENCRYVHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPILSPVDDEGKFTEEAGKFSGLDV 502 (794)
Q Consensus 423 ~G~~L~g~~~~~Pl~~~~~pvvi~~~~V~~~~GTG~Vh~aPaHg~~D~~~~~~~gl~i~~~vd~~G~~~~~~~~~~G~~v 502 (794)
+|++|+|++|.||++++++|| +.++||+.++|||+||+|||||++||.++++||||++++||++|+|+++.|+|.|+++
T Consensus 290 ~G~~l~g~~~~~Pl~~~~~pv-i~~~~V~~~~GTG~Vh~aPahg~~Dy~~~~~~~L~~~~~vd~~G~~~~~~~~~~Gl~v 368 (912)
T PRK05743 290 KGKELEGLVAQHPFYDRDSPV-ILGDHVTLDAGTGLVHTAPGHGEDDYVVGQKYGLEVLNPVDDDGRYTEEAPLFAGLFV 368 (912)
T ss_pred chHhhcCCEEECCCCCCeeeE-eCCCccCCCCCcCeEEeCCCCCHHHHHHHHHcCCCcccccCCCceEecCCcccCCcCH
Confidence 999999999999999999999 6799999999999999999999999999999999999999999999999899999999
Q ss_pred cccchHHHHHHHHhcCCcccccccccccccccCCCCcEEEcccCccccchhh--HHHHHHhhhcCeeecCCC--------
Q 003799 503 LGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTKKPTIFRATEQWFASVEG--FRQAAMDAIGQVKWVPPQ-------- 572 (794)
Q Consensus 503 ~~ea~~~ii~~L~~~g~l~~~~~~~h~yp~~WRt~~pii~r~t~QWfi~~~~--~~~~~l~~i~~v~~~P~~-------- 572 (794)
. +|+++|++.|++.|.+++.+.|.|+||||||||+|||||+++|||+++++ +|+++++++++|+|+|++
T Consensus 369 ~-ea~~~Ii~~L~~~g~l~~~~~~~h~yp~~wR~~~pvi~r~~~QWFi~~~~~~~k~~~l~~~~~v~~~P~~~~~r~~~~ 447 (912)
T PRK05743 369 F-KANPKIIEKLEEKGALLKEEKITHSYPHCWRTKKPVIFRATPQWFISMDKKGLREQALKAIEKVKWIPAWGKNRIESM 447 (912)
T ss_pred H-HhHHHHHHHHHhCCCeeeeeeeeccCCeecCCCCEEEEEecCcccEeCChHHHHHHHHHHHcccEEEChHHHHHHHHH
Confidence 6 99999999999999999999999999999999999999999999999997 999999999999999875
Q ss_pred --------------------------------------------------------------------------------
Q 003799 573 -------------------------------------------------------------------------------- 572 (794)
Q Consensus 573 -------------------------------------------------------------------------------- 572 (794)
T Consensus 448 i~~~~DWcISRQR~WG~PIP~~~~~~~g~~~~~~~~~~~i~~~~~~~g~~~W~~~~~~~~~~~~~~~~~~~~DvlDvWfd 527 (912)
T PRK05743 448 VENRPDWCISRQRTWGVPIPIFYHKETGELHPTPELIEHVAKLFEKEGIDAWFELDAKELLPDEADEYEKETDILDVWFD 527 (912)
T ss_pred HhcCcCccccccceeCceEEEEEECCCCcEeecHHHHHHHHHHHHhhCCccccccCHHHhcCCcccCEEECCchhhhhhh
Confidence
Q ss_pred ------------------------------------------------------------------------------CC
Q 003799 573 ------------------------------------------------------------------------------EA 574 (794)
Q Consensus 573 ------------------------------------------------------------------------------~~ 574 (794)
++
T Consensus 528 Sg~s~~~~~~~~~~~~~P~Dl~~~G~Di~r~Wf~~~l~~~~~~~g~~P~k~vl~HG~vld~~G~KMSKSlGNvIdP~~ii 607 (912)
T PRK05743 528 SGSSHAAVLEQRPELGYPADLYLEGSDQHRGWFQSSLLTSVATRGKAPYKQVLTHGFTVDGKGRKMSKSLGNVIDPQDVI 607 (912)
T ss_pred hCCCHHHHhcCccccCCCceEEEecccccchHHHHHHHHHHHhcCCCccceeEEeeeEECCCCCCCCCCCCCcCCHHHHH
Confidence 33
Q ss_pred CCCCCchhhhhhhhcCCCCceecChHHHHHHHHHHHHHHhHHHHHHhcccCCCCC-CCcCCCCCChhhHHHHHHHHHHHH
Q 003799 575 PGYGADVLRLWVSSVDYTGDVMIGPQVLRQMSDIYRKLRGTLRYLLGNLHDWRVG-NSISYDDLPMIDQYALFQLENIVK 653 (794)
Q Consensus 575 ~~yGaD~lRl~las~~~~~Di~~s~~~l~~~~~~~~kl~Nt~rfll~nl~~~~~~-~~~~~~~l~~~D~~il~~l~~lv~ 653 (794)
++||||+||||++++++++|++|+++.++++.+.+++|||++||+++|+.+|.+. ..++..++..+|+|++++++++++
T Consensus 608 ~~yGaDalR~~ll~~~~~~D~~~s~~~l~~~~~~~~kl~N~~rf~~~nl~~~~~~~~~~~~~~l~~~D~~il~~l~~~~~ 687 (912)
T PRK05743 608 KKYGADILRLWVASTDYSGDVRISDEILKQVAEAYRRIRNTLRFLLGNLNDFDPAKDAVPYEELLELDRWALHRLAELQE 687 (912)
T ss_pred HhcChHHHHHHHHhcCCCCCeeecHHHHHHHHHHHHHHHHHHHHHHhCccCCCcccccCCchhCCHHHHHHHHHHHHHHH
Confidence 5899999999999999999999999999999999999999999999999887654 223344567899999999999999
Q ss_pred HHHHHHhcccHHHHHHHHHHHHHHhhhHHHHHhhccccccCCCChHhHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Q 003799 654 NIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQN 733 (794)
Q Consensus 654 ~v~~~~e~y~f~~ai~~l~~f~~~~lsn~Yle~~K~rly~~~~d~~~r~s~~~vL~~iL~~l~~lLaP~~P~~aEEiw~~ 733 (794)
+++++|++|+|++|++.+++|+++++||+|++.+|||+|+...++..|++++++|+.+|+.+++||+|||||+|||+|++
T Consensus 688 ~v~~~~e~~~f~~a~~~l~~f~~~~ls~~Yie~~K~rly~~~~~~~~r~~~~~vL~~~l~~l~~lLaPi~P~~aEelw~~ 767 (912)
T PRK05743 688 EILEAYENYDFHKVYQKLHNFCSVDLSAFYLDIIKDRLYTDAADSLARRSAQTALYHILEALVRWLAPILSFTAEEIWQY 767 (912)
T ss_pred HHHHHHHhcCHHHHHHHHHHHhhhhhceeeheeccHhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHh
Confidence 99999999999999999999998889999999999999998777777889999999999999999999999999999999
Q ss_pred CCCCccccCCCCCCceeecCCCCCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhcCC
Q 003799 734 LPFAYTLEDGSAAEFVFESKWPVLDEKWRTFPVGEIYFWGKILEVIVVVTYLNETEGF 791 (794)
Q Consensus 734 L~~~~~~~~~~~~~sV~~~~wP~~~e~~~~~~~~~~~~~~~i~~lR~~v~~~~e~~~~ 791 (794)
|+.. ..+|||.+.||++++.+.+ +++++.|+.++++|+++++++|.+|-
T Consensus 768 l~~~-------~~~sv~~~~wP~~~~~~~~--~~~~~~~~~~~~~r~~v~~~i~~~r~ 816 (912)
T PRK05743 768 LPGE-------REESVFLEEWPEVPELADD--EELLAKWEELLEVRDEVNKALEEARK 816 (912)
T ss_pred cccC-------CCCceEEecCCCCccccCC--HHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 9631 1369999999999888765 67788899999999999999998753
No 6
>PLN02882 aminoacyl-tRNA ligase
Probab=100.00 E-value=4.2e-126 Score=1166.96 Aligned_cols=628 Identities=27% Similarity=0.482 Sum_probs=560.5
Q ss_pred CCCcccccHHHHHHHhhcCcchhccc-cCCCCcEEEEcCCCCCCCcccchHHHhHHHHHHHHHHHHhCCCeeEEeccccC
Q 003799 120 RANALVREPEIHKLWDDHQVFLRVAD-KNDGENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDC 198 (794)
Q Consensus 120 r~n~~~~E~~~~~~W~~~~~~~~~~~-~~~~~~f~i~~~pPy~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G~D~ 198 (794)
++|+..+|++|+++|+++++|++..+ +.++++|+|++|||||||.||||||+|++++|+++||+||+||+|+|++||||
T Consensus 7 ~~~~~~~E~~~~~~W~e~~~f~~~~~~~~~~~~f~~~dgPPyanG~~HiGH~~~~~ikDii~Ry~rm~G~~V~~~~GwD~ 86 (1159)
T PLN02882 7 DFSFPKQEEKILSLWSEIDAFKTQLKRTEGLPEYIFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMTGHHVTRRFGWDC 86 (1159)
T ss_pred CCCHHHHHHHHHHHHHhCCCccccccccCCCCCEEEeCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCCcccccCccCC
Confidence 46778899999999999999998754 34678899999999999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHhhchhhh---hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCCccccCChHHHHHHHHHHHHHH
Q 003799 199 HGLPIELKVLQSLDEDA---KKDLTPSKLRAKAAKFAKATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMS 275 (794)
Q Consensus 199 hGlpie~~~~k~~~~~~---~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~lGi~~dwd~~~~T~d~~~~~~v~~~f~~L~ 275 (794)
||+|||.+++|.++... ..++++++|+++|++++.++++.|++++++||+|+||+++|+||||.|++.++|+|.+|+
T Consensus 87 hGlPiE~~vek~lgi~~~~~i~~~g~~~f~~~c~~~~~~~~~~~~~~~~rlG~~~D~~~~y~T~d~~~~~~v~~~f~~l~ 166 (1159)
T PLN02882 87 HGLPVEYEIDKKLGIKRRDDVLKMGIDKYNEECRSIVTRYSKEWEKTVTRTGRWIDFENDYKTMDPKFMESVWWVFKQLF 166 (1159)
T ss_pred CCcHHHHHHHHHcCCCCccchhhcCHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEECCCCcCcCCHHHHHHHHHHHHHHH
Confidence 99999999998887432 235889999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCeeecccCceeccCCCcccccccc--ccCCcccccccceeEEeccCCCCcccccccccCCccceeccCCCCcccccc
Q 003799 276 LQGYIYRGKKPVHWSPSSRTALAEAEL--EYPEGHVSRSIYAVFRMVSAPPSTSGLLNEFLPDLGLAVWTTTPWTVPANA 353 (794)
Q Consensus 276 ~kGlIy~~~~~v~w~~~~~t~Lae~Ev--ey~e~~~~~~~~v~F~l~~~~~~~~~~l~~~~~~~~l~iwTT~PwTi~~n~ 353 (794)
++|+||||.++|+|||.|+|+||++|+ +|++ +.++++||+|++.+.. .+.+++||||||||||||+
T Consensus 167 ~kGliyr~~~~v~wcp~~~TaLs~~E~~~~Yk~-~~~~si~v~F~l~~~~-----------~~~~l~iwTTtPwTLpsn~ 234 (1159)
T PLN02882 167 EKGLVYKGFKVMPYSTACKTPLSNFEAGLNYKD-VSDPAVMVSFPIVGDP-----------DNASFVAWTTTPWTLPSNL 234 (1159)
T ss_pred HCCCEEecceeEeecCCCCCCcchhhhhhhccc-CCCcEEEEEEEecCCC-----------CCcEEEEEeCCccccccCe
Confidence 999999999999999999999997777 7865 8899999999996421 1358999999999999999
Q ss_pred EEEECCCcceeeeeecccccCCCCCcCCCCCCCCCcccCCcceEeeecccchHHHHHhcC------------CceEEEee
Q 003799 354 AVAVNAKLQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFIIVASDLVPTLEAKWG------------TKLVIKKT 421 (794)
Q Consensus 354 av~v~p~~~Y~~v~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~iv~~~~~~~~~~~~~------------~~~~~~~~ 421 (794)
||||||+++|++++... +++.||||+++++.+....+ .+++++++
T Consensus 235 Al~VnP~~~Y~~v~~~~-----------------------~~~~~i~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 291 (1159)
T PLN02882 235 ALCVNPNFTYVKVRNKY-----------------------TGKVYIVAESRLSALPTAKPKSKKGSKPENAAEGYEVLAK 291 (1159)
T ss_pred EEEECCCCcEEEEEecC-----------------------CCeEEEEhHHHHHHHHhhhhcccccccccccccccEEEEE
Confidence 99999999999987531 25789999999999886542 24899999
Q ss_pred eccCcccCCeeecCCC------CCcccEEeccCcccccCCCCceeecCCCChhhHHHHHHhCC-----CccccCCCCCcc
Q 003799 422 LAGSDLENCRYVHPVD------NRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGL-----PILSPVDDEGKF 490 (794)
Q Consensus 422 ~~G~~L~g~~~~~Pl~------~~~~pvvi~~~~V~~~~GTG~Vh~aPaHg~~D~~~~~~~gl-----~i~~~vd~~G~~ 490 (794)
++|++|+|++|.||+. ++..|| ++++||+++.|||+||+|||||++||.+|++||| +++++||++|+|
T Consensus 292 ~~G~~L~g~~y~p~~~~~~~~~~~~~~V-i~~~~V~~~~GTGiVh~aPahG~~Dy~v~~~~gl~~~~~~~~~~vd~~G~~ 370 (1159)
T PLN02882 292 VPGSSLVGKKYEPLFDYFSEFSDTAFRV-VADDYVTDDSGTGVVHCAPAFGEDDYRVCLANGIIEKGGNLPVPVDDDGCF 370 (1159)
T ss_pred ecchhhcCCEEECCccccccccCceEEE-EccCccCCCCCcceeEecCCCChhHHHHHHHcCCCccccCccceECCCceE
Confidence 9999999999987762 346788 7899999999999999999999999999999999 799999999999
Q ss_pred ccccCCCCCccccccchHHHHHHHHhcCCcccccccccccccccCCCCcEEEcccCccccchhhHHHHHHhhhcCeeecC
Q 003799 491 TEEAGKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTKKPTIFRATEQWFASVEGFRQAAMDAIGQVKWVP 570 (794)
Q Consensus 491 ~~~~~~~~G~~v~~ea~~~ii~~L~~~g~l~~~~~~~h~yp~~WRt~~pii~r~t~QWfi~~~~~~~~~l~~i~~v~~~P 570 (794)
++++++|.|+.|. +|++.|++.|++.|.|++.+.+.|+|||||||++|+|||+++|||++++.+++++++++++|+|+|
T Consensus 371 ~~~~~~~~G~~v~-eA~~~Ii~~Lk~~g~L~~~~~~~Hsyp~cwR~~tpli~~a~~qWFi~~~~~k~~~l~~~~~i~w~P 449 (1159)
T PLN02882 371 TEKVTDFSGRYVK-DADKDIIAAIKAKGRLVKSGSITHSYPFCWRSDTPLIYRAVPSWFVKVEEIKDRLLENNKQTYWVP 449 (1159)
T ss_pred ccCCcccCCCCHH-HhhHHHHHHHHHCCCccceeeeecCCCEeeCCCCEEEEEecceeEEEcHHHHHHHHHhhCCcEEEC
Confidence 9999999999995 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC------------------------------------------------------------------------------
Q 003799 571 PQ------------------------------------------------------------------------------ 572 (794)
Q Consensus 571 ~~------------------------------------------------------------------------------ 572 (794)
++
T Consensus 450 ~~~~~~r~~~wl~~~~DW~ISRqR~WGtPIPvw~~~~~~~~~~~~s~~el~~~~~~~~~dlh~~~id~i~~p~~~~~~~~ 529 (1159)
T PLN02882 450 DYVKEKRFHNWLENARDWAVSRSRFWGTPLPIWISDDGEEVVVIGSIAELEKLSGVKVTDLHRHFIDHITIPSSRGPEFG 529 (1159)
T ss_pred CcchhhHHHHHHhcCcccceeeccccCCccceEEeCCCCeEEecCcHHHHHHHhCCchhhccccchhhhccccccCCchh
Confidence 96
Q ss_pred --------------------------------------------------------------------------------
Q 003799 573 -------------------------------------------------------------------------------- 572 (794)
Q Consensus 573 -------------------------------------------------------------------------------- 572 (794)
T Consensus 530 ~~~r~~dVlD~WFdSg~~p~a~~~~p~e~~~~f~~~~PaD~i~eG~Dq~RgWf~~ll~~s~~l~~~~pfk~VivhG~vld 609 (1159)
T PLN02882 530 VLRRVDDVFDCWFESGSMPYAYIHYPFENKELFEKNFPADFVAEGLDQTRGWFYTLMVLSTALFDKPAFKNLICNGLVLA 609 (1159)
T ss_pred ceEecCceeeeeeccCccHHHHcCCcccChhHhhccCCceEEEEecchhhhHHHHHHHHHHHhcCCCCcceeEEccEEEC
Confidence
Q ss_pred ------------------CCCCCCCchhhhhhhhcCC--CCceecChHHHHHH-HHHHHHHHhHHHHHHhcccC------
Q 003799 573 ------------------EAPGYGADVLRLWVSSVDY--TGDVMIGPQVLRQM-SDIYRKLRGTLRYLLGNLHD------ 625 (794)
Q Consensus 573 ------------------~~~~yGaD~lRl~las~~~--~~Di~~s~~~l~~~-~~~~~kl~Nt~rfll~nl~~------ 625 (794)
++++||||+||||++++++ .+|++|+++.+... .++++++||++||+++++.+
T Consensus 610 e~G~KMSKSlGNvIdP~evi~~YGADaLR~~Ll~s~~~~~~d~~fs~~~v~~~~~~~l~kl~Na~rfl~~~~~~~~~~~~ 689 (1159)
T PLN02882 610 EDGKKMSKSLKNYPDPNEVIDKYGADALRLYLINSPVVRAEPLRFKEEGVFGVVKDVFLPWYNAYRFLVQNAKRLEVEGG 689 (1159)
T ss_pred CCCCCcccCCCCCCCHHHHHHHhCcHHHHHHHHhCCcccCcCcccCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccc
Confidence 3358999999999998766 47899988887755 67999999999999988754
Q ss_pred --CCCCCCcCC-CCCChhhHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhHHHHHhhccccccCCCChHhHH
Q 003799 626 --WRVGNSISY-DDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRLYTGGTTSFTRR 702 (794)
Q Consensus 626 --~~~~~~~~~-~~l~~~D~~il~~l~~lv~~v~~~~e~y~f~~ai~~l~~f~~~~lsn~Yle~~K~rly~~~~d~~~r~ 702 (794)
|.|...... .....+|+|+++++++++++++++|++|+|++|++.|++|++ ++||||++.+|||+|.+. ++.+++
T Consensus 690 ~~~~p~~~~~~~~~~~~~D~wIls~l~~li~~v~~~me~y~f~~A~~~I~~Fv~-~lsN~YIe~~Kprl~~~~-~~~~~~ 767 (1159)
T PLN02882 690 APFVPLDLAKLQNSANVLDRWINSATQSLVKFVREEMGAYRLYTVVPYLVKFID-NLTNIYVRFNRKRLKGRT-GEEDCR 767 (1159)
T ss_pred cCCCccccccccccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH-HHhHHHHHhCCHhhhCCC-ChHHHH
Confidence 333210001 234678999999999999999999999999999999999996 599999999999999875 345678
Q ss_pred HHHHHHHHHHHHHHHHhccccchHHHHHHHhCCCCccccCCCCCCceeecCCCCCCcccCCCChhHHHHHHHHHHHHHHH
Q 003799 703 SCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAAEFVFESKWPVLDEKWRTFPVGEIYFWGKILEVIVVV 782 (794)
Q Consensus 703 s~~~vL~~iL~~l~~lLaP~~P~~aEEiw~~L~~~~~~~~~~~~~sV~~~~wP~~~e~~~~~~~~~~~~~~~i~~lR~~v 782 (794)
+++++|+++|+.+++||||||||+||+||++|+.. .....+|||+++||++++.+.+ ++++..++.+++++..+
T Consensus 768 ~al~tL~~vL~~l~~LLaPfmPf~aEeI~q~L~~~----~~~~~~SVh~~~~P~~~~~~~d--~~le~~~~~~~~ii~~~ 841 (1159)
T PLN02882 768 TALSTLYNVLLTSCKVMAPFTPFFTEVLYQNLRKV----LPGSEESIHYCSFPQVDEGELD--ERIEQSVSRMQTVIELA 841 (1159)
T ss_pred HHHHHHHHHHHHHHHHhhchhhHHHHHHHHHhccc----cCCCCCceeecCCCCcchhhcc--hhHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999742 0011369999999999988776 67788899999999999
Q ss_pred HHHHhhcCCC
Q 003799 783 TYLNETEGFS 792 (794)
Q Consensus 783 ~~~~e~~~~~ 792 (794)
+.+.+..+++
T Consensus 842 r~~r~~~~~~ 851 (1159)
T PLN02882 842 RNIRERHNKP 851 (1159)
T ss_pred HHHHHHcCCC
Confidence 9999987753
No 7
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=100.00 E-value=3.1e-125 Score=1154.49 Aligned_cols=649 Identities=24% Similarity=0.451 Sum_probs=563.7
Q ss_pred CccCCCCCCcccccHHHHHHHhhcCcchhcccc-CCCCcEEEEcCCCCCCCcccchHHHhHHHHHHHHHHHHhCCCeeEE
Q 003799 114 KTTFGMRANALVREPEIHKLWDDHQVFLRVADK-NDGENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRY 192 (794)
Q Consensus 114 ~t~f~~r~n~~~~E~~~~~~W~~~~~~~~~~~~-~~~~~f~i~~~pPy~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~ 192 (794)
-+.|+|++|+..+|++|+++|+++++|++..+. .++++|+|++|||||||.||||||+|++++|+++||+||+||+|+|
T Consensus 65 ~~~~~~~~~~~~~E~~~~~~W~e~~~f~~~~~~~~~~~~Fv~~~gPPyanG~lHiGHal~~tikDii~Ry~rm~G~~V~~ 144 (1205)
T PTZ00427 65 FTGVSENPNIVEEEEKVLKYWKSIDAFNTSNKLAKNKKAYIFYDGPPFATGLPHYGHLLAGIIKDCVTRYFYQCGFSVER 144 (1205)
T ss_pred ccCCCCCCCHHHHHHHHHHHHHhCCCcccCccccCCCCcEEEecCCCCCCCCcchhHHHHHHHHHHHHHHHHcCCCeecc
Confidence 567999999999999999999999999987643 4678899999999999999999999999999999999999999999
Q ss_pred eccccCCCchHHHHHHhhchhhhh---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCCccccCChHHHHHHHH
Q 003799 193 VPGWDCHGLPIELKVLQSLDEDAK---KDLTPSKLRAKAAKFAKATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQIE 269 (794)
Q Consensus 193 ~~G~D~hGlpie~~~~k~~~~~~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~~~lGi~~dwd~~~~T~d~~~~~~v~~ 269 (794)
++||||||+|||.+++|.++...+ .+++.++|+++|++++.++.+.++++|++||+|+||+++|+||||.|++.+++
T Consensus 145 ~~GwD~hGlPiE~~vEk~lg~~~k~~i~~~g~~~f~e~c~~~~~~~~~~~~~~~~rlG~~iDw~~~y~T~d~~~~~~v~~ 224 (1205)
T PTZ00427 145 KFGWDCHGLPIEYEIEKENNINKKEDILKMGIDVYNEKCRGIVLKYSNEWVKTVERIGRWIDFKNDYKTMDKTFMESVWW 224 (1205)
T ss_pred CCccCCCCcHHHHHHHHHhCCCcccchhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhCcEEecCCCcCcCCHHHHHHHHH
Confidence 999999999999999998864333 35789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCeeecccCceeccCCCcccccccc--ccCCcccccccceeEEeccCCCC----------c---ccc--ccc
Q 003799 270 VFGQMSLQGYIYRGKKPVHWSPSSRTALAEAEL--EYPEGHVSRSIYAVFRMVSAPPS----------T---SGL--LNE 332 (794)
Q Consensus 270 ~f~~L~~kGlIy~~~~~v~w~~~~~t~Lae~Ev--ey~e~~~~~~~~v~F~l~~~~~~----------~---~~~--l~~ 332 (794)
+|.+|+++|+|||+.++|+|||.|+|+||++|| +|++ +.++++||+|++.+.... . ... +..
T Consensus 225 ~f~~L~ekGlIYr~~k~V~wcp~c~TaLS~~EV~~~ykd-~~dpsi~v~F~l~~~~~~~~~~~~~~~~~~~~~~~~~i~y 303 (1205)
T PTZ00427 225 VFSELYKNNYVYKSFKVMPYSCKCNTPISNFELNLNYKD-TPDPSIIISFVLCSDFPKVEEECNIEEDKQLLGEKYSVLY 303 (1205)
T ss_pred HHHHHHHCCCEEecceeeccCCCCCCchhHHHhhccccc-ccCceEEEEeecccccccccccccccccccccccceeecc
Confidence 999999999999999999999999999999999 7865 899999999999642000 0 000 000
Q ss_pred -------------------ccCCccceeccCCCCccccccEEEECCCcceeeeeecccccCCCCCcCCCCCCCCCcccCC
Q 003799 333 -------------------FLPDLGLAVWTTTPWTVPANAAVAVNAKLQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQ 393 (794)
Q Consensus 333 -------------------~~~~~~l~iwTT~PwTi~~n~av~v~p~~~Y~~v~~~~~~~~~s~~~~~~~~~~g~~~~~~ 393 (794)
...+.+++||||||||||||+||||||+++|+.++...
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~lliwTTtPwTLpan~AlaVnPd~~Yv~v~~~~----------------------- 360 (1205)
T PTZ00427 304 NNKRENSNNGNNNSTNNVCYAQHSEILAWTTTPWTLPSNLALCVNEHFTYLRIHHVK----------------------- 360 (1205)
T ss_pred ccccccccccccccccccccCCCCEEEEEECCchhhhhceEEEECCCCeEEEEEecC-----------------------
Confidence 00236899999999999999999999999999987521
Q ss_pred cceEeeecccchHHHHHhcCC---ceEEEeeeccCcccCCeeecCC---------CCCcccEEeccCcccccCCCCceee
Q 003799 394 KKVFIIVASDLVPTLEAKWGT---KLVIKKTLAGSDLENCRYVHPV---------DNRQCPVVIGGDYITTESGTGLVHT 461 (794)
Q Consensus 394 ~~~~~iv~~~~~~~~~~~~~~---~~~~~~~~~G~~L~g~~~~~Pl---------~~~~~pvvi~~~~V~~~~GTG~Vh~ 461 (794)
+++.+|+++++++.+.+..+. +++++++++|++|+|++|.||+ .++.+|| |+++||++++|||+||+
T Consensus 361 ~~~~~i~a~~~~~~~~~~~~~~~~~~~v~~~~~G~~L~g~~Y~pl~~~~~~~~~~~~~~~pV-i~~d~V~~~~GTGiVh~ 439 (1205)
T PTZ00427 361 SNRVVIVGECRLEWIMKELKWNVEDLKIVNRFKGKELKGLRYKPLFTNFYEKYNFKERAYKI-LADDFVTDDAGTGIVHC 439 (1205)
T ss_pred CCeEEEEehHHHHHHHHhhcccccccEEEEEeechhhCCCeeeCCccccccccccCCceeEE-EccCccCCCCCceeeEe
Confidence 257899999999999887663 5899999999999999999887 2556788 78999999999999999
Q ss_pred cCCCChhhHHHHHHhCC--C----ccccCCCCCccccccCCCCCccccccchHHHHHHHHhcCCcccccccccccccccC
Q 003799 462 APGHGQEDYVTSLKYGL--P----ILSPVDDEGKFTEEAGKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWR 535 (794)
Q Consensus 462 aPaHg~~D~~~~~~~gl--~----i~~~vd~~G~~~~~~~~~~G~~v~~ea~~~ii~~L~~~g~l~~~~~~~h~yp~~WR 535 (794)
|||||++||.+|++||| | ++++||++|+|++++++|.|+.++ +|++.|++.|+++|+|++.+.|.|+||||||
T Consensus 440 aPahg~~Dy~v~~k~gL~~~~~~~~~~~vd~~G~~~~~~~~~~G~~v~-dA~~~Ii~~Lk~~g~L~~~e~~~H~yP~cwR 518 (1205)
T PTZ00427 440 APTYGEDDFRVCKKNGVIDPEKNIFIDPLDANGYFTNEVEEVQNLYIK-EADNVIKKKLKNENRLLSNNTIVHSYPFCWR 518 (1205)
T ss_pred cCCCChhHHHHHHHcCCCCccccccccccCCCceecCCCcccCCCCHH-HhHHHHHHHHHhCCCeeeeeeeeccCCEeCC
Confidence 99999999999999999 2 788999999999999999999996 9999999999999999999999999999999
Q ss_pred CCCcEEEcccCccccchhhHHHHHHhhhcCeeecCCC-------------------------------------------
Q 003799 536 TKKPTIFRATEQWFASVEGFRQAAMDAIGQVKWVPPQ------------------------------------------- 572 (794)
Q Consensus 536 t~~pii~r~t~QWfi~~~~~~~~~l~~i~~v~~~P~~------------------------------------------- 572 (794)
|++||||++++|||+++++++++++++++.|+|+|++
T Consensus 519 ~~tpli~~a~~QWFI~~~~~k~~~l~~~~~i~w~P~~~~~~r~~~wl~n~~DWcISRqR~WGtPIPvW~~~~~~~~~~i~ 598 (1205)
T PTZ00427 519 SDTPLIYRAIPAWFIRVSNSTNELVKNNETTYWIPAHIKEKKFHNWIKDAKDWCISRNRYWGTPIPIWADEKMETVICVE 598 (1205)
T ss_pred CCCEEEEEecceeEEeCcHHHHHHHHcCCccEEeCchhhHhHHHHHHhcCccceeeeccccCccceeEEcCCCCeEeccC
Confidence 9999999999999999999999999999999999996
Q ss_pred --------------------------------------------------------------------------------
Q 003799 573 -------------------------------------------------------------------------------- 572 (794)
Q Consensus 573 -------------------------------------------------------------------------------- 572 (794)
T Consensus 599 s~~el~~~~~~~~~~dlh~~~iD~~~~~~~~g~~~~~~~r~~DVlD~WFdSg~~p~a~~~~P~~~~~~~f~~~fPaD~i~ 678 (1205)
T PTZ00427 599 SIKHLEELSGVKNINDLHRHFIDHIEIKNPKGKTYPKLKRIPEVFDCWFESGSMPYAKVHYPFSTEKEDFHKIFPADFIA 678 (1205)
T ss_pred CHHHHHHHhccccchhhcccccChhhccCCccccccceeecCceEEEEEeCCCChHHHhCCCcccchhhHhccCCceEEE
Confidence
Q ss_pred -------------------------------------------------------CCCCCCCchhhhhhhhc-CC-CCce
Q 003799 573 -------------------------------------------------------EAPGYGADVLRLWVSSV-DY-TGDV 595 (794)
Q Consensus 573 -------------------------------------------------------~~~~yGaD~lRl~las~-~~-~~Di 595 (794)
++++||||+||||++++ .. ++|+
T Consensus 679 eG~Dq~rgWf~s~l~~s~~l~~~~PfK~VlvHG~Vld~dG~KMSKSlGNvIDP~evI~kYGADaLR~~Lls~~~~~~~Dl 758 (1205)
T PTZ00427 679 EGLDQTRGWFYTLLVISTLLFDKAPFKNLICNGLVLASDGKKMSKRLKNYPDPLYILDKYGADSLRLYLINSVAVRAENL 758 (1205)
T ss_pred EecchhccHHHHHHHHHHHhcCCCCcceeEEccEEEcCCCCCcccCCCCCCCHHHHHHhcCCcHHHHHHHhcCCCCCccc
Confidence 33589999999999865 54 5799
Q ss_pred ecChHHHH-HHHHHHHHHHhHHHHHHhcccCCCC--------CCCcCCCCCChhhHHHHHHHHHHHHHHHHHHhcccHHH
Q 003799 596 MIGPQVLR-QMSDIYRKLRGTLRYLLGNLHDWRV--------GNSISYDDLPMIDQYALFQLENIVKNIRESYESYQFFK 666 (794)
Q Consensus 596 ~~s~~~l~-~~~~~~~kl~Nt~rfll~nl~~~~~--------~~~~~~~~l~~~D~~il~~l~~lv~~v~~~~e~y~f~~ 666 (794)
+|+++.+. ...++++++||++||+++++.++.. .......++..+|+|+++++++++++++++|++|+|++
T Consensus 759 ~Fse~~v~e~~r~~l~klwN~~rF~~~~i~~~~~~~~~~f~~~~~~~~~~~~~~DrWILs~l~~li~~v~~~me~Y~f~~ 838 (1205)
T PTZ00427 759 KFQEKGVNEVVKSFILPFYHSFRFFSQEVTRYECLNKKQFLFNTDYIYKNDNIMDQWIFSSVQSLTKSVHTEMKAYKLYN 838 (1205)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccCCcCcccccccCCHHHHHHHHHHHHHHHHHHHHHHccCHHH
Confidence 99999885 5688899999999999998764321 10001124567899999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhHHHHHhhccccccCCCChHhHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhCCCCcccc-----
Q 003799 667 IFQIIQRFIIVDLSNFYFDVAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLE----- 741 (794)
Q Consensus 667 ai~~l~~f~~~~lsn~Yle~~K~rly~~~~d~~~r~s~~~vL~~iL~~l~~lLaP~~P~~aEEiw~~L~~~~~~~----- 741 (794)
|++.|++|++ ++||||++++|+|+|.+..+ ..+.+++++|+++|+.+++||||||||+|||||++|+......
T Consensus 839 A~~~i~~Fi~-~lsnwYIe~~K~rl~~~~~~-~~~~~a~~tL~~vL~~~~~LLaPf~PfiaEeiyq~L~~~~~~~~~~~~ 916 (1205)
T PTZ00427 839 VLPKLLQFIE-NLTNWYIRLNRDRMRGSLGE-ENCLQSLCTTYRTLHLFTVLMAPFTPFITEYIYQQLRRVKSTNEHNEN 916 (1205)
T ss_pred HHHHHHHHHH-HhccHHHHHcchhhccCCCc-HHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHhhhcccccccccc
Confidence 9999999996 59999999999999986433 3456788999999999999999999999999999996410000
Q ss_pred --------C----CCCCCceeecCCCCCCccc-CCCChhHHHHHHHHHHHHHHHHHHHhhcCCC
Q 003799 742 --------D----GSAAEFVFESKWPVLDEKW-RTFPVGEIYFWGKILEVIVVVTYLNETEGFS 792 (794)
Q Consensus 742 --------~----~~~~~sV~~~~wP~~~e~~-~~~~~~~~~~~~~i~~lR~~v~~~~e~~~~~ 792 (794)
+ +...+|||++.||++++.+ ++ .+++..++.++++-..++.+.+..+++
T Consensus 917 ~~~~~~~~~~~~~~~~~~Svh~~~~P~~~~~~~~d--~~~e~~~~~~~~ii~~~R~~R~~~~i~ 978 (1205)
T PTZ00427 917 NETGNTKEGDLNRGVIHKSVHFIMLPQVDEKYIID--YEIIELIEKMKDVILLGRVLRERRKVA 978 (1205)
T ss_pred ccccccccccccccCCCCeeEeeCCCCCcchhccC--HHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 0 0013699999999998775 45 667777888888888887777777654
No 8
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=3.8e-124 Score=1145.32 Aligned_cols=623 Identities=31% Similarity=0.556 Sum_probs=561.1
Q ss_pred CCCCCCcccccHHHHHHHhhcCcchhccc-cCCCCcEEEEcCCCCCCCcccchHHHhHHHHHHHHHHHHhCCCeeEEecc
Q 003799 117 FGMRANALVREPEIHKLWDDHQVFLRVAD-KNDGENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPG 195 (794)
Q Consensus 117 f~~r~n~~~~E~~~~~~W~~~~~~~~~~~-~~~~~~f~i~~~pPy~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G 195 (794)
++.++|+..+|++|+++|+++++|++..+ +.++++|++++|||||||.||||||+|++++|+++||+||+||+|+|+||
T Consensus 7 ~~~~~~~~~iE~~~~~~W~~~~~f~~~~~~~~~~~~f~i~~~PPy~nG~lH~GH~l~~t~kD~i~Ry~rm~G~~v~~~~G 86 (975)
T PRK06039 7 VDSQPDFPALEEEVLKFWKENDIFEKSIENREGGPEFVFYDGPPTANGLPHYGHLLTRTIKDVVPRYKTMKGYKVERRAG 86 (975)
T ss_pred cCCCCCHHHHHHHHHHHHHHCCCcccCccccCCCCCEEEeCCCCCCCCCccHhhhHhhHHHHHHHHHHHhCCCcccCcCC
Confidence 46778999999999999999999998654 35678999999999999999999999999999999999999999999999
Q ss_pred ccCCCchHHHHHHhhchhh---hhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCCccccCChHHHHHHHHHHH
Q 003799 196 WDCHGLPIELKVLQSLDED---AKKDLTPSKLRAKAAKFAKATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQIEVFG 272 (794)
Q Consensus 196 ~D~hGlpie~~~~k~~~~~---~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~lGi~~dwd~~~~T~d~~~~~~v~~~f~ 272 (794)
|||||+|||.+++|.++.. +.+++++++|+++|++|+.++++.|+++|++||+|+||+++|.||||.|++.++|+|.
T Consensus 87 wD~~GlPie~~vek~l~~~~~~~i~~~g~~~f~~~c~~~~~~~~~~~~~~~~rlG~~~Dw~~~y~T~d~~y~~~v~~~F~ 166 (975)
T PRK06039 87 WDTHGLPVELEVEKELGISGKKDIEEYGIEKFNEKCRESVLRYTDEWEEYTERLGRWVDFDNPYKTLDNEYMESVWWALK 166 (975)
T ss_pred cCCCccHHHHHHHHHhCcccccchhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhCceeecCCCcCcCCHHHHHHHHHHHH
Confidence 9999999999999987643 3346889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCeeecccCceeccCCCccccccccc--cCCcccccccceeEEeccCCCCcccccccccCCccceeccCCCCccc
Q 003799 273 QMSLQGYIYRGKKPVHWSPSSRTALAEAELE--YPEGHVSRSIYAVFRMVSAPPSTSGLLNEFLPDLGLAVWTTTPWTVP 350 (794)
Q Consensus 273 ~L~~kGlIy~~~~~v~w~~~~~t~Lae~Eve--y~e~~~~~~~~v~F~l~~~~~~~~~~l~~~~~~~~l~iwTT~PwTi~ 350 (794)
+|+++||||||.++|+|||.|+|+||++||+ |++ ++++++||+|++.+. .+.+++||||||||||
T Consensus 167 ~l~~kGliyr~~~~v~wcp~~~T~Ls~~Ev~~~y~~-~~~~~~~v~f~l~~~------------~~~~l~i~TTrP~Tl~ 233 (975)
T PRK06039 167 QLYDKGLLYKGYRVVPYCPRCETPLSNHEVAQGYKD-VKDPSVYVKFKLKGE------------ENEYLLAWTTTPWTLP 233 (975)
T ss_pred HHHHCCCEEecceeeeecCCCCCCccHHHHhhcccc-cCCceEEEEEEecCC------------CCCEEEEEECCccccc
Confidence 9999999999999999999999999999999 865 789999999999531 2358999999999999
Q ss_pred cccEEEECCCcceeeeeecccccCCCCCcCCCCCCCCCcccCCcceEeeecccchHHHHHhcCCceEEEeeeccCcccCC
Q 003799 351 ANAAVAVNAKLQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFIIVASDLVPTLEAKWGTKLVIKKTLAGSDLENC 430 (794)
Q Consensus 351 ~n~av~v~p~~~Y~~v~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~G~~L~g~ 430 (794)
||+||||||+++|++++.+ ++.|||++++++.+.. .+++++++++|++|+|+
T Consensus 234 ~n~avaV~P~~~Y~~~~~~-------------------------~~~yi~a~~~~~~~~~---~~~~~~~~~~G~~L~G~ 285 (975)
T PRK06039 234 SNLALAVHPDIDYVKVEGG-------------------------GEVYILAEALLEKVLK---EDYEVVETFKGSELEGL 285 (975)
T ss_pred cceEEEECCCCceEEEecC-------------------------CeEEEEhHHHHHHHhh---cccEEEeeecCccccCC
Confidence 9999999999999998753 4789999999999876 36788999999999999
Q ss_pred eeecCCCC-----CcccEEeccCcccccCCCCceeecCCCChhhHHHHHHhCCCccccCCCCCccccccCCCCCcccccc
Q 003799 431 RYVHPVDN-----RQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPILSPVDDEGKFTEEAGKFSGLDVLGD 505 (794)
Q Consensus 431 ~~~~Pl~~-----~~~pvvi~~~~V~~~~GTG~Vh~aPaHg~~D~~~~~~~gl~i~~~vd~~G~~~~~~~~~~G~~v~~e 505 (794)
+|.||+.. +.+|| ++++||++++|||+||+|||||++||++|++||||++++||++|+|++++|+|.|+.+. +
T Consensus 286 ~~~~P~~~~~~~~~~~pi-i~~~~V~~~~GTG~V~~aPahg~~D~~~~~~~~l~~~~~id~~G~~~~~~~~~~G~~v~-e 363 (975)
T PRK06039 286 EYEPPFPYFADEKNAFRV-VLADFVTTEDGTGIVHIAPAFGEDDFEVGKKYGLPVVCPVDDDGRFTEEVPDYAGKFVK-D 363 (975)
T ss_pred EEECCcccccCCcceeEE-EecCccCCCCCccceeeCCCCChHHHHHHHHcCCCccceeCCCceEcCCCccccCCCHH-H
Confidence 99999973 36888 78999999999999999999999999999999999999999999999999999999995 9
Q ss_pred chHHHHHHHHhcCCcccccccccccccccCCCCcEEEcccCccccchhhHHHHHHhhhcCeeecCCC-------------
Q 003799 506 GNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTKKPTIFRATEQWFASVEGFRQAAMDAIGQVKWVPPQ------------- 572 (794)
Q Consensus 506 a~~~ii~~L~~~g~l~~~~~~~h~yp~~WRt~~pii~r~t~QWfi~~~~~~~~~l~~i~~v~~~P~~------------- 572 (794)
|++.|++.|+++|.+++.+.|.|+||||||||+|+++++++|||++++.+++++++.+++++|+|+.
T Consensus 364 A~~~Ii~~L~~~g~l~~~~~~~h~~p~c~R~g~pv~~~~~~qWFi~~~~~k~~ll~~~~~i~~~P~~~~~~~~~~wl~~l 443 (975)
T PRK06039 364 ADKEIIRDLKERGLLFKAETYEHSYPHCWRCDTPLIYYATESWFIRVTKIKDRMLELNQKINWYPEHIKDGRFGKWLENA 443 (975)
T ss_pred hhHHHHHHHHhCCCEeeeeeecCCCCEeCCCCCEEEEEecCeeeEecHHHHHHHHHhhCCeEEECcccchhhHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999998888775553
Q ss_pred --------------------------------------------------------------------------------
Q 003799 573 -------------------------------------------------------------------------------- 572 (794)
Q Consensus 573 -------------------------------------------------------------------------------- 572 (794)
T Consensus 444 ~DW~ISRqr~WG~PIPiw~~~~~g~~~v~~~~~el~~~~g~~~~~~~l~~~~~d~~~~~~~~~~~~~r~~dVlDvWFdSg 523 (975)
T PRK06039 444 RDWNISRNRYWGTPLPIWRCEDCGRIDVIGSIEELEELFGEDVEPIDLHRPYVDEVTLPCPDGGTMRRVPDVIDVWFDSG 523 (975)
T ss_pred ccceeeeccccCCcceEEEecCCCeEEEeccHHHHHHHhCCCcchhhhcccccccccccCCCCcceEeccccccceeecC
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 003799 573 -------------------------------------------------------------------------------- 572 (794)
Q Consensus 573 -------------------------------------------------------------------------------- 572 (794)
T Consensus 524 ~~p~a~~~~p~~~~~~f~~~~Pad~~~~G~Di~r~Wf~~l~~~~~~~~~~~pfk~v~~hG~Vld~~G~KMSKSlGNvIdP 603 (975)
T PRK06039 524 SMPYAQLHYPFENKEWFEKHFPADFIVEGIDQTRGWFYTLLALSTALFDRPPYKNVLVHGHVLDEDGQKMSKSLGNYVDP 603 (975)
T ss_pred CccHHHhCCcccChhhhhccCCceEEEechhhHhhHHHHHHHHHHHhcCCCcccEEEEeeeEECCCCCCcCCCCCCcCCH
Confidence
Q ss_pred --CCCCCCCchhhhhhhhcCC-CCceecChHH-HHHHHHHHHHHHhHHHHHH--hcccCCCCCC-CcCCCCCChhhHHHH
Q 003799 573 --EAPGYGADVLRLWVSSVDY-TGDVMIGPQV-LRQMSDIYRKLRGTLRYLL--GNLHDWRVGN-SISYDDLPMIDQYAL 645 (794)
Q Consensus 573 --~~~~yGaD~lRl~las~~~-~~Di~~s~~~-l~~~~~~~~kl~Nt~rfll--~nl~~~~~~~-~~~~~~l~~~D~~il 645 (794)
++++||+|++|||++++.+ ++|++|+++. ++.+.+.+++|||+++|+. .++.+|.+.. ..+...+..+|+|++
T Consensus 604 ~dli~~yGaDalR~~lls~~~~~~D~~fs~~~~~~~~~~~l~kl~N~~~f~~~y~~~~~~~~~~~~~~~~~~~~~D~wil 683 (975)
T PRK06039 604 FEVFDKYGADALRWYLLSSSAPWEDLRFSEDGVREVVRKFLLTLWNVYSFFVLYANLDGFDYPPAEDEVDSLNELDRWIL 683 (975)
T ss_pred HHHHHHhChHHHHHHHHhCCCCCCCceechhHHHHHHHHHHHHHHHHHHHHHHHhhhccCCccccccccccCCHHHHHHH
Confidence 3358999999999998765 7899999999 7788899999999999976 4555554331 122345678999999
Q ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhHHHHHhhccccccCCCChHhHHHHHHHHHHHHHHHHHHhccccch
Q 003799 646 FQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPH 725 (794)
Q Consensus 646 ~~l~~lv~~v~~~~e~y~f~~ai~~l~~f~~~~lsn~Yle~~K~rly~~~~d~~~r~s~~~vL~~iL~~l~~lLaP~~P~ 725 (794)
++++.++++++++|++|+|+.|++.|++|+ +++||||++.+|+|+|....+ ..+++++++|+++|+.+++||||||||
T Consensus 684 s~l~~li~~v~~a~e~y~~~~A~~~l~~f~-~~lsn~Yi~~~k~r~w~~~~~-~~~~~a~~~L~~~L~~l~~lLaPf~Pf 761 (975)
T PRK06039 684 SRLNSLVKEVTEALDNYDITKAARAIRDFV-DDLSNWYIRRSRRRFWKEEDD-PDKLAAYATLYTVLETLSRLAAPFTPF 761 (975)
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHH-HHHHHHHHHHhhhhhccCCCc-HHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 999999999999999999999999999999 779999999999999987543 346678899999999999999999999
Q ss_pred HHHHHHHhCCCCccccCCCCCCceeecCCCCCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhcCCC
Q 003799 726 LAEDVWQNLPFAYTLEDGSAAEFVFESKWPVLDEKWRTFPVGEIYFWGKILEVIVVVTYLNETEGFS 792 (794)
Q Consensus 726 ~aEEiw~~L~~~~~~~~~~~~~sV~~~~wP~~~e~~~~~~~~~~~~~~~i~~lR~~v~~~~e~~~~~ 792 (794)
+|||||++|+.. + ..+|||.++||++++.+.+ ++++..++.++++-..++.+.+..+++
T Consensus 762 ~aEei~~~L~~~----~--~~~sv~~~~~P~~~~~~~d--~~le~~~~~~~~ii~~~r~~r~~~~i~ 820 (975)
T PRK06039 762 IAEEIYQNLTRE----D--APESVHLADWPEVDESLID--EELEEAMDLVREIVSLGRSARKKAGIK 820 (975)
T ss_pred HHHHHHHhcccc----C--CCCeeEecCCCCCccccCC--HHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 999999999742 0 1369999999999988776 677778888888888888888877764
No 9
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=100.00 E-value=8.6e-123 Score=1128.14 Aligned_cols=639 Identities=42% Similarity=0.726 Sum_probs=564.9
Q ss_pred cCCCCCCcccccHHHHHHHhhcCcchhccc-cCCCCcEEEEcCCCCCCCcccchHHHhHHHHHHHHHHHHhCCCeeEEec
Q 003799 116 TFGMRANALVREPEIHKLWDDHQVFLRVAD-KNDGENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVP 194 (794)
Q Consensus 116 ~f~~r~n~~~~E~~~~~~W~~~~~~~~~~~-~~~~~~f~i~~~pPy~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~ 194 (794)
+||||+|+..+|++||++|+++++|++..+ +.++++|++++|||||||.||||||+|++++|+++||+||+||+|+|+|
T Consensus 1 ~f~~~~~~~~~E~~~~~~W~~~~~f~~~~~~~~~~~~f~i~~~pPy~nG~lH~GH~~~~~~~D~~~Ry~rm~G~~v~~~~ 80 (861)
T TIGR00392 1 KFPMRGNLSKREEKILAFWQENDIFEKVKKLNKGKPEFIFHDGPPYANGSIHLGHALNKILKDIILRYKTMQGFNVTRKP 80 (861)
T ss_pred CCCCCCChhHhhHHHHHHHHHCCchhhhhhccCCCCCeEEecCCCCCCCCccHHHHHHHHHHHHHHHHHHcCCCccCCCC
Confidence 589999999999999999999999998654 3467889999999999999999999999999999999999999999999
Q ss_pred cccCCCchHHHHHHhhchhhhhcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCCccccCChHHHHHHHHHH
Q 003799 195 GWDCHGLPIELKVLQSLDEDAKKDL---TPSKLRAKAAKFAKATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQIEVF 271 (794)
Q Consensus 195 G~D~hGlpie~~~~k~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~lGi~~dwd~~~~T~d~~~~~~v~~~f 271 (794)
||||||+|||.+|+|.++...+.++ ++++|+++|++|+.++++.|+++|++||++.||+++|.|+||.|++.++++|
T Consensus 81 G~D~~Glpie~~~ek~l~~~~~~~~~~~~~~~f~~~c~~~~~~~~~~~~~~~~~lG~~~dw~~~y~T~~p~y~~~~~~~f 160 (861)
T TIGR00392 81 GWDTHGLPIEHKVEKKLGISGKKEISSLEIEEFREKCREFALKQIEEQREQFQRLGVWGDWENPYKTMDPSYEESQWWLF 160 (861)
T ss_pred CcCCCccHHHHHHHHHhCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCceecCCCCcCcCCHHHHHHHHHHH
Confidence 9999999999999998764433333 3577999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCeeecccCceeccCCCccccccccccCCc---ccccccceeEEeccCCCCcccccccccCCccceeccCCCCc
Q 003799 272 GQMSLQGYIYRGKKPVHWSPSSRTALAEAELEYPEG---HVSRSIYAVFRMVSAPPSTSGLLNEFLPDLGLAVWTTTPWT 348 (794)
Q Consensus 272 ~~L~~kGlIy~~~~~v~w~~~~~t~Lae~Evey~e~---~~~~~~~v~F~l~~~~~~~~~~l~~~~~~~~l~iwTT~PwT 348 (794)
.+|+++|+|||+.++|+|||.|+|+|||+||+|+++ +.++++||+|++.+... . . .. .+..+++||||||||
T Consensus 161 ~~l~~~gliyr~~~~v~w~p~~~T~La~~Ev~~~~~~~~~~~~~~~v~f~~~~~~~-~-~-~~--~~~~~l~i~TTrP~T 235 (861)
T TIGR00392 161 KEAHEKGLLYRGLKPVYWSPRCRTALAEAEVEYKENYKDVKDPSIYVKFPVKKDKK-T-Y-LK--VKLSSLLIWTTTPWT 235 (861)
T ss_pred HHHHHCCCEeecceeeecCCCcCCcccHHHHhcccccccccCceEEEEEEecCCcc-c-c-cc--cccceEEEEECCccc
Confidence 999999999999999999999999999999998654 67999999999964211 0 0 00 011289999999999
Q ss_pred cccccEEEECCCcceeeeeecccccCCCCCcCCCCCCCCCcccCCcceEeeecccchHHHHHhcCCceEEEeeeccCccc
Q 003799 349 VPANAAVAVNAKLQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFIIVASDLVPTLEAKWGTKLVIKKTLAGSDLE 428 (794)
Q Consensus 349 i~~n~av~v~p~~~Y~~v~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~G~~L~ 428 (794)
||||+||||||+++|++++.++ .++.+|+++++++++....+.+++++++++|++|+
T Consensus 236 l~~~~ai~v~p~~~Y~~~~~~~-----------------------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~G~~l~ 292 (861)
T TIGR00392 236 LPSNLAIAVHPDFEYALVQDNT-----------------------KVEYFILAKKLVEKLYNKAGSDYEIIKTFKGSDLE 292 (861)
T ss_pred ccCCeeeeeCCCCceEEEEcCC-----------------------CCcEEEEeHHHHHHHHHhcCCceEEEeeecchhhC
Confidence 9999999999999999987531 14689999999999988777668889999999999
Q ss_pred CCeeecCCCCCcc------cEEeccCcccccCCCCceeecCCCChhhHHHHHHhCCCccccCCCCCccccccC-------
Q 003799 429 NCRYVHPVDNRQC------PVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPILSPVDDEGKFTEEAG------- 495 (794)
Q Consensus 429 g~~~~~Pl~~~~~------pvvi~~~~V~~~~GTG~Vh~aPaHg~~D~~~~~~~gl~i~~~vd~~G~~~~~~~------- 495 (794)
|++|.||++++++ |+|++++||+++.|||+||+|||||++||+++++||||++++||++|+|+.+.+
T Consensus 293 g~~~~~P~~~~~~~~~~~~p~v~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~vd~~g~~~~~~~~~~g~~~ 372 (861)
T TIGR00392 293 GLEYEHPLYDFVSQLKEGAPVVIGGDHVTTEDGTGIVHTAPGHGEEDYEIGKKYGLEVLSPVDEKGVYTEGVNDFQGRFV 372 (861)
T ss_pred CCEEECCCCccccccccCCcEEeCCCCCCCCCCCceeEcCCCCCHHHHHHHHHcCCCcccccCCCceECCcCcccccccc
Confidence 9999999999888 988888999999999999999999999999999999999999999999987654
Q ss_pred CCCCccccccchHHHHHHHHhcCCcccccccccccccccCCCCcEEEcccCccccchhhHHHHHHhhhcCeeecCCC---
Q 003799 496 KFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTKKPTIFRATEQWFASVEGFRQAAMDAIGQVKWVPPQ--- 572 (794)
Q Consensus 496 ~~~G~~v~~ea~~~ii~~L~~~g~l~~~~~~~h~yp~~WRt~~pii~r~t~QWfi~~~~~~~~~l~~i~~v~~~P~~--- 572 (794)
+|.|+.+. +|++.|++.|++.|.+++.+.+.|+|||||||++||++++++|||++++.+++++++++++++|+|+.
T Consensus 373 ~~~g~~~~-~a~~~ii~~L~~~g~l~~~~~~~h~~p~~~R~~~~v~~~~~~QWFi~~~~~k~~~l~~~~~i~~~P~~~~~ 451 (861)
T TIGR00392 373 KDADKDII-KANKIIIEQLKDKGLLLKAEKITHSYPHCWRTKTPVIYRATEQWFIKTKDIKDQMLEQIKKVNWVPEWGEG 451 (861)
T ss_pred ccCCccHH-HhHHHHHHHHHhCCCeeeeeeEecCCCccCCCCCEEEEecCccccEEcHHHHHHHHHHhCCcEEECchHHH
Confidence 48899996 99999999999999999999999999999999999999999999999999999999988888776653
Q ss_pred --------------------------------------------------------------------------------
Q 003799 573 -------------------------------------------------------------------------------- 572 (794)
Q Consensus 573 -------------------------------------------------------------------------------- 572 (794)
T Consensus 452 ~~~~~l~~l~DW~ISRqr~WG~pIP~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~w~~~~~~~~~~~~~~~~~~~~~~~r 531 (861)
T TIGR00392 452 RFGNWLENRPDWCISRQRYWGIPIPIWYCEDTGEPIVVGSIEELIELIELKGIDAWFEDLHRDFLDKITLKSGDGGEYRR 531 (861)
T ss_pred HHHHHHhCCCcceeeccccCCCeeeEEEECCCCCCcCchhHHHHHHHHHHhCCccccccchhhhcCchhccCCCCcceEE
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 003799 573 -------------------------------------------------------------------------------- 572 (794)
Q Consensus 573 -------------------------------------------------------------------------------- 572 (794)
T Consensus 532 ~~dvlDvWfdS~~~~~~~~~~~~~~~~f~~~~P~d~~i~G~Di~r~Wf~~~~~~~~~~~~~~P~k~v~~hG~vl~~~G~K 611 (861)
T TIGR00392 532 VPDVLDVWFDSGSMPYASIHYPFENEKFKEVFPADFILEGSDQTRGWFYSSLAIGTALFGQAPYKNVITHGFTLDEKGRK 611 (861)
T ss_pred ccccccchhhcCcchHHhcCCCCCcchhhccCCceEEEEecchhccHHHHHHHHHHHHcCCCChHhhEecceEECCCCCC
Confidence
Q ss_pred -------------CCCCCCCchhhhhhhhcCCCCceecChHHHHHHHH-HHHHHHhHHHHHH--hcccCCCCC-CCcCCC
Q 003799 573 -------------EAPGYGADVLRLWVSSVDYTGDVMIGPQVLRQMSD-IYRKLRGTLRYLL--GNLHDWRVG-NSISYD 635 (794)
Q Consensus 573 -------------~~~~yGaD~lRl~las~~~~~Di~~s~~~l~~~~~-~~~kl~Nt~rfll--~nl~~~~~~-~~~~~~ 635 (794)
++++||+|++|||++++++++|++|+++.++.+.+ +.++++|+++|++ +++.+|.+. ..++..
T Consensus 612 MSKSkGNvI~p~d~i~~yGaDalR~~ll~~~~~~D~~fs~~~l~~~~~~~~n~l~N~~~~~~~~~~l~~~~~~~~~~~~~ 691 (861)
T TIGR00392 612 MSKSLGNVVDPLKVINKYGADILRLYVASSDPWEDLRFSDEILKQVVEKYRKIRWNTYRFLLTYANLDKFDPLFNSVAVE 691 (861)
T ss_pred cCCCCCCCCCHHHHHHHcCHHHHHHHHHhCCCCCCceECHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCccccccccc
Confidence 23589999999999988888999999999988766 7888999999998 888777653 222334
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhHHHHHhhccccccCCCChHhHHHHHHHHHHHHHHH
Q 003799 636 DLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRLYTGGTTSFTRRSCQTVLSAHLLSI 715 (794)
Q Consensus 636 ~l~~~D~~il~~l~~lv~~v~~~~e~y~f~~ai~~l~~f~~~~lsn~Yle~~K~rly~~~~d~~~r~s~~~vL~~iL~~l 715 (794)
.+...|+|++++++.++++++++|++|+|++|++.+++|++.++||+|++.+|+++|+...++..| +++++|+.+++.+
T Consensus 692 ~l~~~d~~ll~~l~~~~~~v~~~~e~~~~~~a~~~l~~f~~~~l~n~Yi~~~k~~lw~~~~~~~~~-~~~~~l~~~l~~l 770 (861)
T TIGR00392 692 KFPEEDRWILSRLNSLVEEVNEALEKYNFHKVLRALQDFIVEELSNWYIRIIRDRLYCEAKDNDKR-AAQTTLYYALLTL 770 (861)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhhHHhccCCCCHHHH-HHHHHHHHHHHHH
Confidence 567889999999999999999999999999999999999988899999999999999877665444 7889999999999
Q ss_pred HHHhccccchHHHHHHHhCCCCccccCCCCCCceeecCCCCCCcccCCCChh-----HHHHHHHHHHHHHHHHHHHhhcC
Q 003799 716 VRVIAPILPHLAEDVWQNLPFAYTLEDGSAAEFVFESKWPVLDEKWRTFPVG-----EIYFWGKILEVIVVVTYLNETEG 790 (794)
Q Consensus 716 ~~lLaP~~P~~aEEiw~~L~~~~~~~~~~~~~sV~~~~wP~~~e~~~~~~~~-----~~~~~~~i~~lR~~v~~~~e~~~ 790 (794)
++||+|||||+|||||++|+.. ...+||+.++||++++.+.+...+ +.+.++.++++|++++..++...
T Consensus 771 ~~lL~P~~P~~aeeiw~~L~~~------~~~~si~~~~wP~~~~~~~d~~~~~~~~~l~~~i~~ir~ir~~~~~~~~~~~ 844 (861)
T TIGR00392 771 VRLLAPFLPHTAEEIYQNLPGG------EEEESVHLNLWPEVDEEFIDEALEANMAIVREIVEAFLALRDAANKKLRQPL 844 (861)
T ss_pred HHHHHHhhhhhHHHHHHhcccc------CCCCceeccCCCCCchhhcCHHHHHHHHHHHHHHHHHHHHHHHhChhhhhHh
Confidence 9999999999999999999742 013689999999998877652211 13568889999999988877653
No 10
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.5e-122 Score=1068.93 Aligned_cols=582 Identities=29% Similarity=0.508 Sum_probs=529.9
Q ss_pred CCCCCcccccHHHHHHHhhcCcchhccccCCCCcEEEEcCCCCCCCcccchHHHhHHHHHHHHHHHHhCCCeeEEecccc
Q 003799 118 GMRANALVREPEIHKLWDDHQVFLRVADKNDGENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWD 197 (794)
Q Consensus 118 ~~r~n~~~~E~~~~~~W~~~~~~~~~~~~~~~~~f~i~~~pPy~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G~D 197 (794)
+..+|+..+|++|+++|+++++|+....... ++|+|..||||++|.||||||++.++.|+++||+||+||+|+|+||||
T Consensus 2 ~~~ydp~~iE~k~~~~W~~~~~f~~~~~~~~-~~f~I~~PPPNVTG~LHmGHAl~~tl~D~l~RykRM~G~~vl~~pG~D 80 (877)
T COG0525 2 PKTYDPKEIEEKWYKKWEESGYFKPDPNEDK-PPFSIDTPPPNVTGSLHMGHALNYTLQDILARYKRMRGYNVLWPPGTD 80 (877)
T ss_pred CCCCChhhhhHHHHHHHHhcCCccCCCCCCC-CCcEEeCCCCCCCCcccchhhhhHHHHHHHHHHHHcCCCeeecCCCCC
Confidence 4558999999999999999999987643211 569999999999999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHhhch--hhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCCccccCChHHHHHHHHHHHHHH
Q 003799 198 CHGLPIELKVLQSLD--EDAKKDLTPSKLRAKAAKFAKATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMS 275 (794)
Q Consensus 198 ~hGlpie~~~~k~~~--~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~lGi~~dwd~~~~T~d~~~~~~v~~~f~~L~ 275 (794)
|||+|+|.+++|++. ...+.++++++|+++|++|.+++.+.+++|+++||+++||++.++||||.+.++|+++|.+||
T Consensus 81 hAGIaTq~~VEk~l~~~g~~r~d~gRe~Fl~~~weWk~e~~~~I~~Q~~rLG~S~DWsrE~fTmD~~~s~av~~~Fv~Ly 160 (877)
T COG0525 81 HAGIATQVVVEKQLAAEGITRHDLGREEFLKKCWEWKEESGGTIREQLRRLGVSVDWSRERFTMDPGLSRAVQEAFVRLY 160 (877)
T ss_pred CCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCHHHHHHHHHHHHHHH
Confidence 999999999999984 234678899999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCeeecccCceeccCCCccccccccccCCcccccccceeEEeccCCCCcccccccccCCccceeccCCCCccccccEE
Q 003799 276 LQGYIYRGKKPVHWSPSSRTALAEAELEYPEGHVSRSIYAVFRMVSAPPSTSGLLNEFLPDLGLAVWTTTPWTVPANAAV 355 (794)
Q Consensus 276 ~kGlIy~~~~~v~w~~~~~t~Lae~Evey~e~~~~~~~~v~F~l~~~~~~~~~~l~~~~~~~~l~iwTT~PwTi~~n~av 355 (794)
++|+|||++++|+|||.|+|+|||.||+|++ ..+...|++|++.+. +.+|+|+|||||||+|++||
T Consensus 161 ~~GlIYr~~~lVNWcP~~~TAiSd~EVe~~e-~~g~L~~i~y~l~~~-------------~~~i~VATTRPEtmlgdtAV 226 (877)
T COG0525 161 EKGLIYRGERLVNWCPKCRTAISDIEVEYKE-VEGKLYYIKYPLADG-------------DGYLVVATTRPETLLGDTAV 226 (877)
T ss_pred HCCceeecCCcccCCCccccchhhhhhccce-eeeeEEEEEEecCCC-------------CceEEEEecCccccccceEE
Confidence 9999999999999999999999999999976 678889999999753 34899999999999999999
Q ss_pred EECCCc-ceeeeeecccccCCCCCcCCCCCCCCCcccCCcceEeeecccchHHHHHhcCCceEEEeeeccCcccCCeeec
Q 003799 356 AVNAKL-QYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFIIVASDLVPTLEAKWGTKLVIKKTLAGSDLENCRYVH 434 (794)
Q Consensus 356 ~v~p~~-~Y~~v~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~G~~L~g~~~~~ 434 (794)
+|||++ +|. +|+|+.+.+
T Consensus 227 aVhP~DeRYk-------------------------------------------------------------~LvGk~v~l 245 (877)
T COG0525 227 AVHPDDERYK-------------------------------------------------------------HLVGKEVIL 245 (877)
T ss_pred EECCCChhhH-------------------------------------------------------------hhcCCEEec
Confidence 999998 664 588999999
Q ss_pred CCCCCcccEEeccCcccccCCCCceeecCCCChhhHHHHHHhCCCccccCCCCCccccccC-CCCCccccccchHHHHHH
Q 003799 435 PVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPILSPVDDEGKFTEEAG-KFSGLDVLGDGNVAVVKY 513 (794)
Q Consensus 435 Pl~~~~~pvvi~~~~V~~~~GTG~Vh~aPaHg~~D~~~~~~~gl~i~~~vd~~G~~~~~~~-~~~G~~v~~ea~~~ii~~ 513 (794)
|+.++++|| |.++||++++|||+|+++|+||++||+++++|+||+++++|++|+++++++ +|.||.++ +||++|++.
T Consensus 246 Pl~~r~IpI-iaD~~VD~eFGTG~VkItpahD~nD~e~~krh~Lp~i~i~d~dG~in~~~~~~~~Gl~r~-eAR~kIv~~ 323 (877)
T COG0525 246 PLVGREIPI-IADEYVDPEFGTGAVKITPAHDFNDYEVGKRHNLPLINIIDEDGRINEEAAGEFAGLDRF-EARKKIVED 323 (877)
T ss_pred CCCCCeeee-ecCcccCCcCCCceEEecCCCCchhhhhhhcCCCCceEEECCCCeeccCCccccCCCcHH-HHHHHHHHH
Confidence 999999999 789999999999999999999999999999999999999999999998775 99999997 999999999
Q ss_pred HHhcCCcccccccccccccccCCCCcEEEcccCccccchhhHHHHHHhhhc--CeeecCCC-------------------
Q 003799 514 LDEQMSLIMEEPYEHKYPYDWRTKKPTIFRATEQWFASVEGFRQAAMDAIG--QVKWVPPQ------------------- 572 (794)
Q Consensus 514 L~~~g~l~~~~~~~h~yp~~WRt~~pii~r~t~QWfi~~~~~~~~~l~~i~--~v~~~P~~------------------- 572 (794)
|++.|+|++.+.+.|+.||||||++||.+++++|||+++..+++.++++++ .++|+|+.
T Consensus 324 L~~~GlLvk~e~~~h~V~~~~R~g~~IEp~ls~QWfVk~~~la~~~l~~~~~g~i~f~P~~~~~~~~~W~~~i~DWcISR 403 (877)
T COG0525 324 LEEQGLLVKIEPHKHSVGHCERCGTPIEPLLSKQWFVKVLELAKKALEAVKDGKIKFVPERMEKRYEDWMENIRDWCISR 403 (877)
T ss_pred HHhCCCeEeeeeccccCccccCCCceeeeeecceeeEEhHhhHHHHHHHHhcCCceEecHHHHHHHHHHHhhCcCceeee
Confidence 999999999999999999999999999999999999999999999999999 89999997
Q ss_pred --------------------------------------------------------------------------------
Q 003799 573 -------------------------------------------------------------------------------- 572 (794)
Q Consensus 573 -------------------------------------------------------------------------------- 572 (794)
T Consensus 404 QlwwGh~IPvWy~~~~g~v~v~~~~~~~~~~~~~~~~~~~~qd~DVLDTWFSS~LwPfstlgWp~~t~~l~~fyPt~llv 483 (877)
T COG0525 404 QLWWGHRIPVWYCKECGNVVVAEEEPEDPAAAEKCPKEELEQDEDVLDTWFSSSLWPFSTLGWPEETPDLKKFYPTDLLV 483 (877)
T ss_pred eeecCcccceEEecCCCcEEeCCccccchhhhccCchhcccCCcchhhhhhhcccccccccCCCCcchHHHhcCCCcccc
Confidence
Q ss_pred -------------------------------------------------------CCCCCCCchhhhhhhhc-CCCCcee
Q 003799 573 -------------------------------------------------------EAPGYGADVLRLWVSSV-DYTGDVM 596 (794)
Q Consensus 573 -------------------------------------------------------~~~~yGaD~lRl~las~-~~~~Di~ 596 (794)
++++||||+||||+++. ..+.|++
T Consensus 484 tG~DIIffWvarmi~~~~~~~~~~PFk~V~ihGLVrDe~G~KMSKS~GNvIDP~d~I~~yGaDAlRf~la~~~~~G~Di~ 563 (877)
T COG0525 484 TGHDIIFFWVARMIMRGLHLTGEVPFKDVYIHGLVRDEQGRKMSKSKGNVIDPLDVIDKYGADALRFTLASLASPGRDIN 563 (877)
T ss_pred ccchhhHHHHHHHHHHHHHhcCCCCccEEEEeeeEEcCCCCCCcccCCCcCCHHHHHHHhChHHHHHHHHhccCCCcccC
Confidence 34699999999999976 7788999
Q ss_pred cChHHHHHHHHHHHHHHhHHHHHHhcccCCCCCCCcCCCCCChhhHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Q 003799 597 IGPQVLRQMSDIYRKLRGTLRYLLGNLHDWRVGNSISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFII 676 (794)
Q Consensus 597 ~s~~~l~~~~~~~~kl~Nt~rfll~nl~~~~~~~~~~~~~l~~~D~~il~~l~~lv~~v~~~~e~y~f~~ai~~l~~f~~ 676 (794)
|+++.++...++++||||+.||++.|+.+..+..... .....+|+|||++++++++.++++|++|+|..|.++|++|+|
T Consensus 564 ~~~~~~~~~rnF~nKlWNa~Rfv~~~~~~~~~~~~~~-~~~~~~drWIls~l~~~v~~v~~~ld~y~f~~a~~~ly~F~W 642 (877)
T COG0525 564 FDEKRVEGYRNFLNKLWNATRFVLMNLDDLGPDDLDL-LALSLADRWILSRLNETVKEVTEALDNYRFDEAARALYEFIW 642 (877)
T ss_pred cCHHHHHHHHHHHHHHHhHHHHHHhcccccCcccccc-cccchHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhH
Confidence 9999999999999999999999999987765442211 333689999999999999999999999999999999999999
Q ss_pred HhhhHHHHHhhccccccCCCChHhHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhCCCCccccCCCCCCceeecCCCC
Q 003799 677 VDLSNFYFDVAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAAEFVFESKWPV 756 (794)
Q Consensus 677 ~~lsn~Yle~~K~rly~~~~d~~~r~s~~~vL~~iL~~l~~lLaP~~P~~aEEiw~~L~~~~~~~~~~~~~sV~~~~wP~ 756 (794)
++||+||||++|+++|.+ ...+++++.+|+++|+.+++||||||||+||||||+++.. +|||.++||+
T Consensus 643 ~~fcD~YlEl~K~~l~~~---~~~~~~a~~tL~~vl~~~lrLLhPfmPfiTEei~q~l~~~---------~si~~~~~P~ 710 (877)
T COG0525 643 NDFCDWYLELAKPRLYGG---EEEKRAARATLYYVLDTLLRLLHPFMPFITEEIWQKLPGT---------ESIHLASWPE 710 (877)
T ss_pred HHHHHHHHHHhhhhhcCc---HHHHHHHHHHHHHHHHHHHHHhCCCCccchHHHHHhcCCC---------CeEEeccCCC
Confidence 999999999999999987 4445688999999999999999999999999999999742 6999999999
Q ss_pred CCcccCCCChhHHHHHHHHHHHHHHHHHHHhhcCCC
Q 003799 757 LDEKWRTFPVGEIYFWGKILEVIVVVTYLNETEGFS 792 (794)
Q Consensus 757 ~~e~~~~~~~~~~~~~~~i~~lR~~v~~~~e~~~~~ 792 (794)
+++...+ ++.+..++.+.++-..++.+...++++
T Consensus 711 ~~~~~~d--~~a~~~~~~l~~ii~~iR~~r~e~~~~ 744 (877)
T COG0525 711 VDEELID--EEAEKEFELLKEIISAIRNLRAEMNLS 744 (877)
T ss_pred cchhhcc--HHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 9877666 455555666666666666555555543
No 11
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=2e-116 Score=1070.58 Aligned_cols=585 Identities=27% Similarity=0.470 Sum_probs=528.4
Q ss_pred ccCCCCCCcccccHHHHHHHhhcCcchhccccCCCCcEEEEcCCCCCCCcccchHHHhHHHHHHHHHHHHhCCCeeEEec
Q 003799 115 TTFGMRANALVREPEIHKLWDDHQVFLRVADKNDGENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVP 194 (794)
Q Consensus 115 t~f~~r~n~~~~E~~~~~~W~~~~~~~~~~~~~~~~~f~i~~~pPy~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~ 194 (794)
+.+++++|+..+|++|+++|+++++|++..+ ++++|+|++||||+||.||||||+|++++|+++||+||+||+|+|+|
T Consensus 3 ~~~~~~y~~~~~E~~~~~~W~~~~~f~~~~~--~~~~f~i~~ppP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~ 80 (874)
T PRK05729 3 MELPKTYDPKEVEAKWYQKWEEKGYFKPDDN--SKKPFSIVIPPPNVTGSLHMGHALNNTLQDILIRYKRMQGYNTLWLP 80 (874)
T ss_pred CcCCCCCCHHHHHHHHHHHHHHCCCcccCcC--CCCCEEEecCCCCCCCcchHHHHHHHHHHHHHHHHHHhCCCcccCCC
Confidence 3467779999999999999999999998643 35569999999999999999999999999999999999999999999
Q ss_pred cccCCCchHHHHHHhhchh--hhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCCccccCChHHHHHHHHHHH
Q 003799 195 GWDCHGLPIELKVLQSLDE--DAKKDLTPSKLRAKAAKFAKATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQIEVFG 272 (794)
Q Consensus 195 G~D~hGlpie~~~~k~~~~--~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~lGi~~dwd~~~~T~d~~~~~~v~~~f~ 272 (794)
||||||+|+|.++++.++. ..+.++++++|+++|++|++++.+.++++|++||+++||+++|+|||+.|+++|+++|.
T Consensus 81 G~D~~Gi~~e~~ve~~l~~~g~~~~~~~re~f~~~~~~w~~~~~~~~~~~~~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~ 160 (874)
T PRK05729 81 GTDHAGIATQMVVERQLAAEGKSRHDLGREKFLEKVWEWKEESGGTITNQLRRLGASCDWSRERFTMDEGLSKAVREVFV 160 (874)
T ss_pred CCCccchhhHHHHHHHHHhcCCChHHCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcceecCCCcccCCHHHHHHHHHHHH
Confidence 9999999999999887742 23567889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCeeecccCceeccCCCccccccccccCCcccccccceeEEeccCCCCcccccccccCCccceeccCCCCccccc
Q 003799 273 QMSLQGYIYRGKKPVHWSPSSRTALAEAELEYPEGHVSRSIYAVFRMVSAPPSTSGLLNEFLPDLGLAVWTTTPWTVPAN 352 (794)
Q Consensus 273 ~L~~kGlIy~~~~~v~w~~~~~t~Lae~Evey~e~~~~~~~~v~F~l~~~~~~~~~~l~~~~~~~~l~iwTT~PwTi~~n 352 (794)
+|+++|+|||+.++|+|||.|+|+|||+||+|++ +.+.++|++|++.+ .+.+++|||||||||+||
T Consensus 161 ~L~~~GlIyr~~~~v~wcp~~~talsd~EV~~~~-~~~~~~~i~f~~~~-------------~~~~l~vaTtrPeTl~~~ 226 (874)
T PRK05729 161 RLYEKGLIYRGKRLVNWDPKLQTALSDLEVEYKE-VKGKLWHIRYPLAD-------------GSDYLVVATTRPETMLGD 226 (874)
T ss_pred HHHHCCCEeecCcccccCCCCCCcchhhhccccc-ccceEEEEEEEecC-------------CCcEEEEEeCCcchhhcC
Confidence 9999999999999999999999999999999965 78899999999964 235899999999999999
Q ss_pred cEEEECCCcc-eeeeeecccccCCCCCcCCCCCCCCCcccCCcceEeeecccchHHHHHhcCCceEEEeeeccCcccCCe
Q 003799 353 AAVAVNAKLQ-YAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFIIVASDLVPTLEAKWGTKLVIKKTLAGSDLENCR 431 (794)
Q Consensus 353 ~av~v~p~~~-Y~~v~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~G~~L~g~~ 431 (794)
+||||||++. |. +|+|++
T Consensus 227 ~avaV~P~d~ry~-------------------------------------------------------------~l~g~~ 245 (874)
T PRK05729 227 TAVAVNPEDERYK-------------------------------------------------------------HLIGKT 245 (874)
T ss_pred eeEeECCCccHHH-------------------------------------------------------------HhcCCE
Confidence 9999999973 21 588999
Q ss_pred eecCCCCCcccEEeccCcccccCCCCceeecCCCChhhHHHHHHhCCCccccCCCCCccccccCCCCCccccccchHHHH
Q 003799 432 YVHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPILSPVDDEGKFTEEAGKFSGLDVLGDGNVAVV 511 (794)
Q Consensus 432 ~~~Pl~~~~~pvvi~~~~V~~~~GTG~Vh~aPaHg~~D~~~~~~~gl~i~~~vd~~G~~~~~~~~~~G~~v~~ea~~~ii 511 (794)
+.||+.++++|| |+++||++++|||+||++||||++||+++++|||++++++|++|++++++|+|.|++++ +|+++|+
T Consensus 246 ~~~P~~~~~ipi-i~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~i~~~G~~~~~~~~~~G~~~~-~ar~~i~ 323 (874)
T PRK05729 246 VILPLVGREIPI-IADEYVDPEFGTGAVKITPAHDPNDFEVGKRHNLPMINIMDEDGTINENPGEYQGLDRF-EARKAIV 323 (874)
T ss_pred EECCCCCCeeeE-ecCccCCCCCCCcceEecCCCCHHHHHHHHHcCCCcccccCCCCeEcCCCcccCCCCHH-HHHHHHH
Confidence 999999999999 78999999999999999999999999999999999999999999999999999999997 9999999
Q ss_pred HHHHhcCCcccccccccccccccCCCCcEEEcccCccccchhhHHHHHHhhhc--CeeecCCC-----------------
Q 003799 512 KYLDEQMSLIMEEPYEHKYPYDWRTKKPTIFRATEQWFASVEGFRQAAMDAIG--QVKWVPPQ----------------- 572 (794)
Q Consensus 512 ~~L~~~g~l~~~~~~~h~yp~~WRt~~pii~r~t~QWfi~~~~~~~~~l~~i~--~v~~~P~~----------------- 572 (794)
+.|++.|++++.+++.|+||||||||+||++++++|||++++.+++++++.++ ++.|+|+.
T Consensus 324 ~~L~~~g~l~~~~~~~~~~p~~~R~~~~i~~~~~~QWFi~~~~~~~~~~~~v~~~~i~~~P~~~~~~~~~wl~~l~DWcI 403 (874)
T PRK05729 324 ADLEELGLLVKIEPHTHSVGHSDRSGVVIEPYLSDQWFVKMKPLAKPALEAVENGEIKFVPERWEKTYFHWMENIQDWCI 403 (874)
T ss_pred HHHHhCCCeeeeEEeeccCCeeCCCCceEEEEecCcceEehHHHHHHHHHHHhcCCcEEEChHHHHHHHHHHhcCcccee
Confidence 99999999999999999999999999999999999999999999999999984 57776663
Q ss_pred --------------------------------------------------------------------------------
Q 003799 573 -------------------------------------------------------------------------------- 572 (794)
Q Consensus 573 -------------------------------------------------------------------------------- 572 (794)
T Consensus 404 SRq~~WG~pIP~~~~~~~~~~v~~~~~~~~~~~~~~~~~DvlDtWfsS~l~~~~~lgwp~~~~~~~~~~P~d~~~~G~Di 483 (874)
T PRK05729 404 SRQLWWGHRIPAWYDEDGEVYVGREEPEAREKALLTQDEDVLDTWFSSALWPFSTLGWPEKTEDLKRFYPTSVLVTGFDI 483 (874)
T ss_pred eeecccCCcccEEEeCCCcEEeCCcccccccccCeEeCCceecceecCCccHHHHhCCCCCcHHHHhcCCcccccccccc
Confidence
Q ss_pred --------------------------------------------------CCCCCCCchhhhhhhhc-CCCCceecChHH
Q 003799 573 --------------------------------------------------EAPGYGADVLRLWVSSV-DYTGDVMIGPQV 601 (794)
Q Consensus 573 --------------------------------------------------~~~~yGaD~lRl~las~-~~~~Di~~s~~~ 601 (794)
++++||+|++|||+++. .+++|++|+++.
T Consensus 484 i~~W~a~~~~~~~~~~~~~Pfk~v~~hG~v~d~~G~KMSKSlGNvIdP~dvi~~yGaDalR~~ll~~~~~~~Di~fs~~~ 563 (874)
T PRK05729 484 IFFWVARMIMMGLHFTGQVPFKDVYIHGLVRDEQGRKMSKSKGNVIDPLDLIDKYGADALRFTLAALASPGRDIRFDEER 563 (874)
T ss_pred cchHHHHHHHHHHHhcCCCchhheEEeeeEECCCCCCcccCCCCCCCHHHHHHHhChHHHHHHHHhCCCCCCCceeCHHH
Confidence 33589999999999876 678899999999
Q ss_pred HHHHHHHHHHHHhHHHHHHhcccCCCCCCCcCCCCCChhhHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhH
Q 003799 602 LRQMSDIYRKLRGTLRYLLGNLHDWRVGNSISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSN 681 (794)
Q Consensus 602 l~~~~~~~~kl~Nt~rfll~nl~~~~~~~~~~~~~l~~~D~~il~~l~~lv~~v~~~~e~y~f~~ai~~l~~f~~~~lsn 681 (794)
+....++++||||++||++.++.++.+....+...+...|+|+++++++++++++++|++|+|+.|++.+++|+++++||
T Consensus 564 l~~~~~~~nkl~N~~Rf~~~~~~~~~~~~~~~~~~~~~~D~wil~~l~~~~~~v~~~~e~y~f~~a~~~l~~f~~~~~~~ 643 (874)
T PRK05729 564 VEGYRNFANKLWNASRFVLMNLEGADVGELPDPEELSLADRWILSRLNRTVAEVTEALDKYRFDEAARALYEFIWNEFCD 643 (874)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCcccccccccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988876654332222335678899999999999999999999999999999999999988999
Q ss_pred HHHHhhccccccCCCChHhHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhCCCCccccCCCCCCceeecCCCCCCccc
Q 003799 682 FYFDVAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAAEFVFESKWPVLDEKW 761 (794)
Q Consensus 682 ~Yle~~K~rly~~~~d~~~r~s~~~vL~~iL~~l~~lLaP~~P~~aEEiw~~L~~~~~~~~~~~~~sV~~~~wP~~~e~~ 761 (794)
||++.+|+|+| + . .+++++.+|+++|+.+++||+|||||+|||||++|+.. ...+||+.++||++++.+
T Consensus 644 ~Yle~~k~~l~-~---~-~~~~~~~~l~~~l~~~~~lL~Pf~PfitEelw~~l~~~------~~~~si~~~~~P~~~~~~ 712 (874)
T PRK05729 644 WYLELAKPVLQ-E---A-AKRATRATLAYVLEQILRLLHPFMPFITEELWQKLAPL------GIEESIMLAPWPEADEAI 712 (874)
T ss_pred HHHHHHHHHhh-h---h-HHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHhcccC------CCCCceeecCCCCCCccc
Confidence 99999999988 2 1 26788899999999999999999999999999999742 112589999999998876
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHhhcCCC
Q 003799 762 RTFPVGEIYFWGKILEVIVVVTYLNETEGFS 792 (794)
Q Consensus 762 ~~~~~~~~~~~~~i~~lR~~v~~~~e~~~~~ 792 (794)
+ ++++..++.++++-+.++.+....+++
T Consensus 713 -~--~~~~~~~~~~~~ii~~ir~~r~~~~i~ 740 (874)
T PRK05729 713 -D--EAAEAEFEWLKELITAIRNIRAEMNIP 740 (874)
T ss_pred -C--HHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 4 667777888888888888877776654
No 12
>PLN02943 aminoacyl-tRNA ligase
Probab=100.00 E-value=5.2e-116 Score=1067.73 Aligned_cols=582 Identities=26% Similarity=0.454 Sum_probs=516.2
Q ss_pred CCCCCCcccccHHHHHHHhhcCcchhccccCCCCcEEEEcCCCCCCCcccchHHHhHHHHHHHHHHHHhCCCeeEEeccc
Q 003799 117 FGMRANALVREPEIHKLWDDHQVFLRVADKNDGENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGW 196 (794)
Q Consensus 117 f~~r~n~~~~E~~~~~~W~~~~~~~~~~~~~~~~~f~i~~~pPy~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G~ 196 (794)
++.++|+.. |++|+++|+++++|++..+ .++++|+|++|||||||.||||||+|++++|+++||+||+||+|+|+|||
T Consensus 57 ~~~~y~~~~-E~~~~~~W~~~~~f~~~~~-~~~~~f~i~~pPP~~tG~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G~ 134 (958)
T PLN02943 57 TAKSFDFTS-EERIYNWWESQGYFKPNFD-RGGDPFVIPMPPPNVTGSLHMGHAMFVTLEDIMVRYNRMKGRPTLWIPGT 134 (958)
T ss_pred cCCCCChhh-hHHHHHHHHHCCCcccCcc-cCCCCEEEecCCCCCCCchhHHHHHHHHHHHHHHHHHHhcCCeeecCCCC
Confidence 455578888 9999999999999998654 45788999999999999999999999999999999999999999999999
Q ss_pred cCCCchHHHHHHhhchh--hhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCCccccCChHHHHHHHHHHHHH
Q 003799 197 DCHGLPIELKVLQSLDE--DAKKDLTPSKLRAKAAKFAKATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQM 274 (794)
Q Consensus 197 D~hGlpie~~~~k~~~~--~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~lGi~~dwd~~~~T~d~~~~~~v~~~f~~L 274 (794)
||||+|+|.+++|.++. ..+.++++++|+++|++|++++++.++++|++||++.||+++|+|+||.|+++++++|.+|
T Consensus 135 D~~Gl~~e~~vek~l~~~~~~~~~~~re~f~~~~~~~~~~~~~~~~~~~~~lG~s~Dw~~~~~T~d~~~~~~v~~~F~~l 214 (958)
T PLN02943 135 DHAGIATQLVVEKMLASEGIKRTDLGRDEFTKRVWEWKEKYGGTITNQIKRLGASCDWSRERFTLDEQLSRAVVEAFVRL 214 (958)
T ss_pred CcccchhHHHHHHHHHHcCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcceecCCCcccCCHHHHHHHHHHHHHH
Confidence 99999999999988742 2346778999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCeeecccCceeccCCCccccccccccCCcccccccceeEEeccCCCCcccccccccCCccceeccCCCCccccccE
Q 003799 275 SLQGYIYRGKKPVHWSPSSRTALAEAELEYPEGHVSRSIYAVFRMVSAPPSTSGLLNEFLPDLGLAVWTTTPWTVPANAA 354 (794)
Q Consensus 275 ~~kGlIy~~~~~v~w~~~~~t~Lae~Evey~e~~~~~~~~v~F~l~~~~~~~~~~l~~~~~~~~l~iwTT~PwTi~~n~a 354 (794)
+++|||||+.++|+|||.|+|+||++||+|.+ +.++++|++|++.+. .+.+++|||||||||+||+|
T Consensus 215 ~~~Gliyr~~~~V~wcp~~~Tals~~Evey~e-~~~~~~~i~f~l~~~------------~~~~l~vaTTrPeTl~~~~a 281 (958)
T PLN02943 215 HEKGLIYQGSYMVNWSPNLQTAVSDLEVEYSE-EPGTLYYIKYRVAGG------------SEDFLTIATTRPETLFGDVA 281 (958)
T ss_pred HHCCCEEecCceeccCCCCCCCcCHHHhhccc-ccccEEEEEEEEcCC------------CCCEEEEEeCChhhhhcceE
Confidence 99999999999999999999999999999975 788999999999642 12479999999999999999
Q ss_pred EEECCCcc-eeeeeecccccCCCCCcCCCCCCCCCcccCCcceEeeecccchHHHHHhcCCceEEEeeeccCcccCCeee
Q 003799 355 VAVNAKLQ-YAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFIIVASDLVPTLEAKWGTKLVIKKTLAGSDLENCRYV 433 (794)
Q Consensus 355 v~v~p~~~-Y~~v~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~G~~L~g~~~~ 433 (794)
|||||+++ |. .|+|+++.
T Consensus 282 vavnP~d~ry~-------------------------------------------------------------~l~g~~~~ 300 (958)
T PLN02943 282 IAVNPEDDRYS-------------------------------------------------------------KYIGKMAI 300 (958)
T ss_pred EEECCCCHHHH-------------------------------------------------------------HHcCCEEE
Confidence 99999986 75 35689999
Q ss_pred cCCC-CCcccEEeccCcccccCCCCceeecCCCChhhHHHHHHhCCCccccCCCCCccccccCCCCCccccccchHHHHH
Q 003799 434 HPVD-NRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPILSPVDDEGKFTEEAGKFSGLDVLGDGNVAVVK 512 (794)
Q Consensus 434 ~Pl~-~~~~pvvi~~~~V~~~~GTG~Vh~aPaHg~~D~~~~~~~gl~i~~~vd~~G~~~~~~~~~~G~~v~~ea~~~ii~ 512 (794)
||++ ++++|| |+++||++++|||+||++||||++||+++++||||+++++|++|++++.. |..++ +|+++|++
T Consensus 301 ~Pl~~~~~ipi-i~~~~V~~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~~id~~G~~~~~~----g~~~~-ear~~iv~ 374 (958)
T PLN02943 301 VPMTYGRHVPI-IADRYVDKDFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVA----GLYWF-EAREKLWS 374 (958)
T ss_pred CCCcCCCeeeE-EecCcccCCCCCceEEeCCCCChHHHHHHHHcCCCceeeeCCCceeeccC----CccHH-HHHHHHHH
Confidence 9996 999999 78999999999999999999999999999999999999999999998754 55575 99999999
Q ss_pred HHHhcCCcccccccccccccccCCCCcEEEcccCccccchhhHHHHHHhhhc--CeeecCCC------------------
Q 003799 513 YLDEQMSLIMEEPYEHKYPYDWRTKKPTIFRATEQWFASVEGFRQAAMDAIG--QVKWVPPQ------------------ 572 (794)
Q Consensus 513 ~L~~~g~l~~~~~~~h~yp~~WRt~~pii~r~t~QWfi~~~~~~~~~l~~i~--~v~~~P~~------------------ 572 (794)
.|++.|++++.+++.|+|||||||++||++++++|||++++.+++++++.++ .++|+|+.
T Consensus 375 ~L~~~g~l~~~e~~~~~~p~c~R~~~~Ie~~~~~QWFi~~~~l~~~~l~~v~~~~i~~~P~~~~~~~~~wl~~l~DWcIS 454 (958)
T PLN02943 375 DLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALKAVENGELTIIPERFEKIYNHWLSNIKDWCIS 454 (958)
T ss_pred HHHHCCCeeeeeeeecCCCeeCCCCcEeEEEeccceeEEHHHHHHHHHHHHhcCCcEEEChHHHHHHHHHHhcCccceEE
Confidence 9999999999999999999999999999999999999999999999999885 47777775
Q ss_pred --------------------------------------------------------------------------------
Q 003799 573 -------------------------------------------------------------------------------- 572 (794)
Q Consensus 573 -------------------------------------------------------------------------------- 572 (794)
T Consensus 455 RQr~WG~pIP~w~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~~~~~DVlDtWFdS~l~p~s~lgwp~~~~~~~~~~ 534 (958)
T PLN02943 455 RQLWWGHRIPVWYIVGKDCEEDYIVARSAEEALEKAREKYGKDVEIYQDPDVLDTWFSSALWPFSTLGWPDVSAEDFKKF 534 (958)
T ss_pred EecCCCCccCceeccccCCCceEEecCcHHHHHHHhhhhcCCchheeecCceEEEEEcCccchHHhcCCCccChHHHhcc
Confidence
Q ss_pred --------------------------------------------------------------CCCCCCCchhhhhhhhcC
Q 003799 573 --------------------------------------------------------------EAPGYGADVLRLWVSSVD 590 (794)
Q Consensus 573 --------------------------------------------------------------~~~~yGaD~lRl~las~~ 590 (794)
++++||+|++|||++++.
T Consensus 535 yP~dl~~~G~Dii~fW~a~m~~~~~~~~~~~Pf~~v~~hg~v~~~~G~KMSKS~GN~i~p~~~i~~ygaDalR~~l~~~~ 614 (958)
T PLN02943 535 YPTTVLETGHDILFFWVARMVMMGIEFTGTVPFSYVYLHGLIRDSQGRKMSKTLGNVIDPLDTIKEFGTDALRFTLALGT 614 (958)
T ss_pred CCCeEEEEeehHHHHHHHHHHHhhhhhcCCCChheEEEeccEECCCCCcccCcCCCCCCHHHHHHhcCChHHHHHHHhCC
Confidence 335899999999999888
Q ss_pred CCCceecChHHHHHHHHHHHHHHhHHHHHHhcccCCCC------------CCCcCCCCCChhhHHHHHHHHHHHHHHHHH
Q 003799 591 YTGDVMIGPQVLRQMSDIYRKLRGTLRYLLGNLHDWRV------------GNSISYDDLPMIDQYALFQLENIVKNIRES 658 (794)
Q Consensus 591 ~~~Di~~s~~~l~~~~~~~~kl~Nt~rfll~nl~~~~~------------~~~~~~~~l~~~D~~il~~l~~lv~~v~~~ 658 (794)
+++|++|+++.+..+.++++||||++||+++++.+... +...+..++...|+|++++++.++++++++
T Consensus 615 ~~~d~~fs~~~l~~~~~~~~kl~N~~rf~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~wilskl~~~i~~v~~~ 694 (958)
T PLN02943 615 AGQDLNLSTERLTSNKAFTNKLWNAGKFVLQNLPSQSDTSAWEHILACKFDKEESLLSLPLPECWVVSKLHELIDSVTTS 694 (958)
T ss_pred CCCCccccHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccCCccccccccCHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999988743210 000111246788999999999999999999
Q ss_pred HhcccHHHHHHHHHHHHHHhhhHHHHHhhccccccCCCChHhHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhCCCCc
Q 003799 659 YESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAY 738 (794)
Q Consensus 659 ~e~y~f~~ai~~l~~f~~~~lsn~Yle~~K~rly~~~~d~~~r~s~~~vL~~iL~~l~~lLaP~~P~~aEEiw~~L~~~~ 738 (794)
|++|+|+.|++.+++|+++++||+|++.+|+|+|.++.+ ..+++++++|+++++.+++||+|||||+|||||++|+..
T Consensus 695 ~e~y~f~~A~~~i~~f~~~~~~d~YiE~~Kprl~~~~~~-~~~~~a~~vL~~vl~~ll~LL~PfmPfitEELwq~L~~~- 772 (958)
T PLN02943 695 YDKYFFGDVGREIYDFFWSDFADWYIEASKTRLYHSGDN-SALSRAQAVLLYVFENILKLLHPFMPFVTEELWQALPYR- 772 (958)
T ss_pred HHhcChhHHHHHHHHHHHHHHHHHHHHhccHhhccCCch-HHHHHHHHHHHHHHHHHHHHHhCcchhHHHHHHHHcCCC-
Confidence 999999999999999998889999999999999976533 346778999999999999999999999999999999743
Q ss_pred cccCCCCCCceeecCCCCCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhcCCC
Q 003799 739 TLEDGSAAEFVFESKWPVLDEKWRTFPVGEIYFWGKILEVIVVVTYLNETEGFS 792 (794)
Q Consensus 739 ~~~~~~~~~sV~~~~wP~~~e~~~~~~~~~~~~~~~i~~lR~~v~~~~e~~~~~ 792 (794)
.+||+.++||+++ .+.+ ++.+..++.+.++-+.++.+....+++
T Consensus 773 -------~~si~~~~wP~~~-~~~d--~~~~~~~~~v~~ii~~iR~~r~~~~i~ 816 (958)
T PLN02943 773 -------KEALIVSPWPQTS-LPKD--LKSIKRFENLQSLTRAIRNARAEYSVE 816 (958)
T ss_pred -------CCceeecCCCCCc-ccCC--HHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 3589999999976 3333 455566677777666666666666553
No 13
>PLN02381 valyl-tRNA synthetase
Probab=100.00 E-value=4.1e-116 Score=1073.28 Aligned_cols=603 Identities=22% Similarity=0.366 Sum_probs=517.0
Q ss_pred CCCCCCcccccHHHHHHHhhcCcchhccccCCCCcEEEEcCCCCCCCcccchHHHhHHHHHHHHHHHHhCCCeeEEeccc
Q 003799 117 FGMRANALVREPEIHKLWDDHQVFLRVADKNDGENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGW 196 (794)
Q Consensus 117 f~~r~n~~~~E~~~~~~W~~~~~~~~~~~~~~~~~f~i~~~pPy~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G~ 196 (794)
++.++|+..+|++|+++|+++++|++.. +.++++|+|++|||||||.||||||+|++++|+++||+||+||+|+|+|||
T Consensus 96 ~~~~yd~~~iE~~w~~~W~~~~~f~~~~-~~~~~~f~i~~ppPy~nG~lHiGHa~~~ti~Dii~Ry~rm~G~~vl~~~G~ 174 (1066)
T PLN02381 96 MAKQYSPSAVEKSWYAWWEKSGYFGADA-KSSKPPFVIVLPPPNVTGALHIGHALTAAIEDTIIRWKRMSGYNALWVPGV 174 (1066)
T ss_pred cccCCCHHHHHHHHHHHHHHCCCccCCc-cCCCCcEEEEeCCCCCCCCccHHHHHHHHHHHHHHHHHHhCCCcccccCCC
Confidence 5566888999999999999999999864 346788999999999999999999999999999999999999999999999
Q ss_pred cCCCchHHHHHHhhchh---hhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCCccccCChHHHHHHHHHHHH
Q 003799 197 DCHGLPIELKVLQSLDE---DAKKDLTPSKLRAKAAKFAKATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQ 273 (794)
Q Consensus 197 D~hGlpie~~~~k~~~~---~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~lGi~~dwd~~~~T~d~~~~~~v~~~f~~ 273 (794)
||||+|+|.+++|.++. ..+.++++++|+++|++|++++++.|+++|++||+++||+++|+||||.|.++++++|.+
T Consensus 175 D~~Glp~e~~vek~l~~~~~~~~~~~~re~f~~~~~~~~~~~~~~~~~q~~~lG~s~Dw~~~~~T~d~~~~~~v~~~F~~ 254 (1066)
T PLN02381 175 DHAGIATQVVVEKKLMRERHLTRHDIGREEFVSEVWKWKDEYGGTILNQLRRLGASLDWSRECFTMDEQRSKAVTEAFVR 254 (1066)
T ss_pred CCCcChHHHHHHHHhHhhcCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCchhccCCccccCCHHHHHHHHHHHHH
Confidence 99999999999988732 235678999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCeeecccCceeccCCCccccccccccCCcccccccceeEEeccCCCCcccc--cc-cc-cCCccceeccCCCCcc
Q 003799 274 MSLQGYIYRGKKPVHWSPSSRTALAEAELEYPEGHVSRSIYAVFRMVSAPPSTSGL--LN-EF-LPDLGLAVWTTTPWTV 349 (794)
Q Consensus 274 L~~kGlIy~~~~~v~w~~~~~t~Lae~Evey~e~~~~~~~~v~F~l~~~~~~~~~~--l~-~~-~~~~~l~iwTT~PwTi 349 (794)
|+++|||||+.++|+|||.|+|+|||+||+|.+ +.+++.| .|+........... +. .+ ..+.+++|||||||||
T Consensus 255 L~~~GlIyr~~~~VnWcP~~~TaLSd~EVey~d-~~~~s~~-~~~~~~~~~~~g~~~~~~Y~l~~~~~~i~vATtRpEti 332 (1066)
T PLN02381 255 LYKEGLIYRDIRLVNWDCTLRTAISDVEVDYID-IKERTLL-KVPGYDKPVEFGVLTSFAYPLEGGLGEIVVATTRIETM 332 (1066)
T ss_pred HHHCCCEEeccccccCCCCCCCCccHHHhhhhc-cccchhh-cccCCCcceeeEEEEEEEEEecCCCCEEEEecCCHHHH
Confidence 999999999999999999999999999999964 6666655 44421100000000 00 00 0124699999999999
Q ss_pred ccccEEEECCCcc-eeeeeecccccCCCCCcCCCCCCCCCcccCCcceEeeecccchHHHHHhcCCceEEEeeeccCccc
Q 003799 350 PANAAVAVNAKLQ-YAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFIIVASDLVPTLEAKWGTKLVIKKTLAGSDLE 428 (794)
Q Consensus 350 ~~n~av~v~p~~~-Y~~v~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~G~~L~ 428 (794)
+|++||+|||++. | ++|+
T Consensus 333 ~g~~avaV~P~d~ry-------------------------------------------------------------~~L~ 351 (1066)
T PLN02381 333 LGDTAIAIHPDDERY-------------------------------------------------------------KHLH 351 (1066)
T ss_pred hcccceeeCCCCcch-------------------------------------------------------------hhhC
Confidence 9999999999974 2 1588
Q ss_pred CCeeecCCCCCcccEEeccCcccccCCCCceeecCCCChhhHHHHHHhCCCccccCCCCCccccccC-CCCCccccccch
Q 003799 429 NCRYVHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPILSPVDDEGKFTEEAG-KFSGLDVLGDGN 507 (794)
Q Consensus 429 g~~~~~Pl~~~~~pvvi~~~~V~~~~GTG~Vh~aPaHg~~D~~~~~~~gl~i~~~vd~~G~~~~~~~-~~~G~~v~~ea~ 507 (794)
|++|.||++++.+||+..++||++++|||+||++||||++||+++++||||++++||++|+++++++ +|.|++++ +|+
T Consensus 352 G~~~~~Pl~~~~ipIi~d~~~Vd~e~GTG~V~i~PaHd~~Dy~~~~~~~L~~i~~id~~G~~~~~~~~~~~Gl~~~-eAr 430 (1066)
T PLN02381 352 GKFAVHPFNGRKLPIICDAILVDPNFGTGAVKITPAHDPNDFEVGKRHNLEFINIFTDDGKINSNGGSEFAGMPRF-AAR 430 (1066)
T ss_pred CCEEECCCCCCEEEEEECCccccccCCCCcEEecCCCChHHHHHHHHcCCCeeeeeCCCceeCCCCccccCCCCHH-HHH
Confidence 9999999999999994334699999999999999999999999999999999999999999998865 89999996 999
Q ss_pred HHHHHHHHhcCCcccccccccccccccCCCCcEEEcccCccccchhhHHHHHHhhh-----cCeeecCCC----------
Q 003799 508 VAVVKYLDEQMSLIMEEPYEHKYPYDWRTKKPTIFRATEQWFASVEGFRQAAMDAI-----GQVKWVPPQ---------- 572 (794)
Q Consensus 508 ~~ii~~L~~~g~l~~~~~~~h~yp~~WRt~~pii~r~t~QWfi~~~~~~~~~l~~i-----~~v~~~P~~---------- 572 (794)
+.|++.|++.|++++.+.|.|+|||||||++||++++++|||++++.+++++++++ +.|+|+|+.
T Consensus 431 ~~Ii~~L~~~g~l~~~~~~~h~~p~c~R~~~~ie~~~~~QWFi~~~~l~~~al~av~~~~~~~i~~~P~~~~~~~~~wl~ 510 (1066)
T PLN02381 431 EAVIEALQKKGLYRGAKNNEMRLGLCSRTNDVVEPMIKPQWFVNCSSMAKQALDAAIDGENKKLEFIPKQYLAEWKRWLE 510 (1066)
T ss_pred HHHHHHHHhCCCEecceeeecCCCeeCCCCceEEEeecccceEEchHHHHHHHHHHhhccCCceEEEChHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999988 678888885
Q ss_pred --------------------------------------------------------------------------------
Q 003799 573 -------------------------------------------------------------------------------- 572 (794)
Q Consensus 573 -------------------------------------------------------------------------------- 572 (794)
T Consensus 511 n~~DWcISRQr~WG~pIPiw~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rd~DVlDtWF~Sg~~p 590 (1066)
T PLN02381 511 NIRDWCISRQLWWGHRIPAWYVTLEDDQLKELGSYNDHWVVARNESDALLEASQKFPGKKFELSQDPDVLDTWFSSGLFP 590 (1066)
T ss_pred cCccceeeeecccCCccceEEeccChhhcccCCcccceEEEccchHhhcchhhcccCCCccceeecCceeeEEEeCCchH
Confidence
Q ss_pred ------------------------------------------------------------------------------C-
Q 003799 573 ------------------------------------------------------------------------------E- 573 (794)
Q Consensus 573 ------------------------------------------------------------------------------~- 573 (794)
+
T Consensus 591 ~~~lg~P~~~~~~~~~~P~d~~~~G~Dii~~W~~rmi~~~~~~~~~~PFk~v~~hG~V~D~~G~KMSKS~GNvIdP~~vi 670 (1066)
T PLN02381 591 LSVLGWPDDTDDLKAFYPTSVLETGHDILFFWVARMVMMGMQLGGDVPFRKVYLHPMIRDAHGRKMSKSLGNVIDPLEVI 670 (1066)
T ss_pred HHHhcCCCCHHHHhccCCCeeeeecchhhhhHHHHHHHHHHHhCCCCchHHheecceEECCCCCCCCCCCCCCCCHHHHH
Confidence 1
Q ss_pred ------------------------------------CCCCCCchhhhhhhhcC-CCCceecChHHHHHHHHHHHHHHhHH
Q 003799 574 ------------------------------------APGYGADVLRLWVSSVD-YTGDVMIGPQVLRQMSDIYRKLRGTL 616 (794)
Q Consensus 574 ------------------------------------~~~yGaD~lRl~las~~-~~~Di~~s~~~l~~~~~~~~kl~Nt~ 616 (794)
+++||||+||||++++. .+.|++|+.+.+...+++++||||++
T Consensus 671 ~~~~~~~l~~~~~~~~~~~~e~~~~~~~~~~~~p~gi~~yGADalR~~l~~~~~~~~di~~~~~~v~~~r~f~nKlwNa~ 750 (1066)
T PLN02381 671 NGISLEGLHKRLEEGNLDPKELVVAKEGQKKDFPNGIAECGTDALRFALVSYTAQSDKINLDILRVVGYRQWCNKLWNAV 750 (1066)
T ss_pred hhcchhhHHHhhhccccchhhhhhHhhhccccCCCCccccChHHHHHHHHcCCccccccCccHHHHHHHHHHHHHHHHHH
Confidence 23899999999999765 45799999999999999999999999
Q ss_pred HHHHhcccC-CCCCCCcCCCCCChhhHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhHHHHHhhccccccCC
Q 003799 617 RYLLGNLHD-WRVGNSISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRLYTGG 695 (794)
Q Consensus 617 rfll~nl~~-~~~~~~~~~~~l~~~D~~il~~l~~lv~~v~~~~e~y~f~~ai~~l~~f~~~~lsn~Yle~~K~rly~~~ 695 (794)
||+++++.+ |.+...++...+..+|+|++++|+.++++++++|++|+|+.|++++++|++.+|||||++.+|+|+|++.
T Consensus 751 rf~~~~~~~~~~~~~~~~~~~~~~~DrWILskL~~~i~~v~~~~e~y~F~~A~~~l~~F~~~dl~d~Yie~~K~~l~~~~ 830 (1066)
T PLN02381 751 RFAMSKLGDDYTPPATLSVETMPFSCKWILSVLNKAISKTVSSLDAYEFSDAASTVYSWWQYQFCDVFIEAIKPYFAGDN 830 (1066)
T ss_pred HHHHhhcccccCcccccCccccCHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhHHHHHHHhHHHHccCC
Confidence 999998864 4443222334567899999999999999999999999999999999999999999999999999999764
Q ss_pred C-ChHhHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhCCCCccccCCCCCCceeecCCCCCCcccCCCChhHHHHHHH
Q 003799 696 T-TSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAAEFVFESKWPVLDEKWRTFPVGEIYFWGK 774 (794)
Q Consensus 696 ~-d~~~r~s~~~vL~~iL~~l~~lLaP~~P~~aEEiw~~L~~~~~~~~~~~~~sV~~~~wP~~~e~~~~~~~~~~~~~~~ 774 (794)
. ++..+++++++|+++|+.+++||||||||+|||||+.|+.. .+....+||+.++||++++.|.+ ++++..++.
T Consensus 831 ~~~~~~r~~a~~~L~~vL~~llrLL~PfmPfitEELw~~L~~~---~~~~~~~SI~~~~~P~~~~~~~d--~~le~~~~~ 905 (1066)
T PLN02381 831 PEFASERAAAQDTLWICLDTGLRLLHPFMPFVTEELWQRLPQP---KDHTRKDSIMISEYPSAVEAWTN--EKVEYEMDL 905 (1066)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhhhh---ccCCCCCeeEeCCCCCCCchhCC--HHHHHHHHH
Confidence 3 23456788999999999999999999999999999999642 00011369999999999988776 455555555
Q ss_pred HHHHHHHHHHHHhhc
Q 003799 775 ILEVIVVVTYLNETE 789 (794)
Q Consensus 775 i~~lR~~v~~~~e~~ 789 (794)
++++-..++.+....
T Consensus 906 l~~ii~~iR~lR~~~ 920 (1066)
T PLN02381 906 VLSTVKCLRSLRAEV 920 (1066)
T ss_pred HHHHHHHHHHHHHHc
Confidence 555544444444433
No 14
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=100.00 E-value=3.6e-115 Score=1070.57 Aligned_cols=592 Identities=23% Similarity=0.380 Sum_probs=520.6
Q ss_pred CCCCCCcccccHHHHHHHhhcCcchhcc---ccCCCCcEEEEcCCCCCCCcccchHHHhHHHHHHHHHHHHhCCCeeEEe
Q 003799 117 FGMRANALVREPEIHKLWDDHQVFLRVA---DKNDGENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYV 193 (794)
Q Consensus 117 f~~r~n~~~~E~~~~~~W~~~~~~~~~~---~~~~~~~f~i~~~pPy~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~~ 193 (794)
++.++|+..+|++|+++|+++++|++.. .+.++++|+|++|||||||.||||||+|++++|+++||+||+||+|+|+
T Consensus 24 ~~~~yd~~~iE~~~~~~W~~~~~f~~~~~~~~~~~~~~f~i~~ppP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G~~v~~~ 103 (995)
T PTZ00419 24 MAASYDPKEVESGWYEWWEKSGFFKPAEDAKSLNSGKKFVIVLPPPNVTGYLHIGHALTGAIQDSLIRYHRMKGDETLWV 103 (995)
T ss_pred cCCCCCHHHHHHHHHHHHHHCCCcccCccccccCCCCeEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHhcCCcccCC
Confidence 5677899999999999999999999852 2346788999999999999999999999999999999999999999999
Q ss_pred ccccCCCchHHHHHHhhchhh---hhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCCccccCChHHHHHHHHH
Q 003799 194 PGWDCHGLPIELKVLQSLDED---AKKDLTPSKLRAKAAKFAKATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQIEV 270 (794)
Q Consensus 194 ~G~D~hGlpie~~~~k~~~~~---~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~lGi~~dwd~~~~T~d~~~~~~v~~~ 270 (794)
|||||||+|+|.++++.+... .+.++++++|+++|++|++++++.++++|++||+++||+++|+|+||.|.+.++++
T Consensus 104 ~G~D~~Gl~~~~~vE~~l~~~~~~~~~~~~~e~f~~~~~~w~~~~~~~~~~~~~~lG~~~DW~~~~~T~d~~~~~~v~~~ 183 (995)
T PTZ00419 104 PGTDHAGIATQVVVEKKLMKEENKTRHDLGREEFLKKVWEWKDKHGNNICNQLRRLGSSLDWSREVFTMDEQRSKAVKEA 183 (995)
T ss_pred CCCCCCchhhHHHHHHHHHHhcCCChHHcCHHHHHHHHHHHHHHHHHHHHHHHHHhCceeeCCCCcCcCCHHHHHHHHHH
Confidence 999999999999999877322 34568899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCeeecccCceeccCCCccccccccccCCccccccc----------------ceeEEeccCCCCccccccccc
Q 003799 271 FGQMSLQGYIYRGKKPVHWSPSSRTALAEAELEYPEGHVSRSI----------------YAVFRMVSAPPSTSGLLNEFL 334 (794)
Q Consensus 271 f~~L~~kGlIy~~~~~v~w~~~~~t~Lae~Evey~e~~~~~~~----------------~v~F~l~~~~~~~~~~l~~~~ 334 (794)
|.+|+++|||||+.++|+|||.|+|+|||+||+|.+ +.++++ |++|++.+
T Consensus 184 F~~l~~~Gliyr~~~~V~wcp~~~Talsd~EVe~~~-~~~~~~~~~~~~~~~~~~g~l~~i~f~l~~------------- 249 (995)
T PTZ00419 184 FVRLYEDGLIYRDTRLVNWCCYLKTAISDIEVEFEE-IEKPTKITIPGYDKKVEVGVLWHFAYPLED------------- 249 (995)
T ss_pred HHHHHHCCCEEecceeeecCCCCCCCCchhhccccc-ccccceeeccccccccccceeEEEEEeecC-------------
Confidence 999999999999999999999999999999999965 555553 33444321
Q ss_pred CC-ccceeccCCCCccccccEEEECCCcceeeeeecccccCCCCCcCCCCCCCCCcccCCcceEeeecccchHHHHHhcC
Q 003799 335 PD-LGLAVWTTTPWTVPANAAVAVNAKLQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFIIVASDLVPTLEAKWG 413 (794)
Q Consensus 335 ~~-~~l~iwTT~PwTi~~n~av~v~p~~~Y~~v~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~iv~~~~~~~~~~~~~ 413 (794)
.+ .+++|||||||||+||+||||||++.+.
T Consensus 250 ~~~~~l~vaTTrPeTl~g~~avav~P~d~~y------------------------------------------------- 280 (995)
T PTZ00419 250 SGQEEIVVATTRIETMLGDVAVAVHPKDERY------------------------------------------------- 280 (995)
T ss_pred CCCcEEEEEeCCcchhhhCeEEEECCCCcHH-------------------------------------------------
Confidence 12 3899999999999999999999997421
Q ss_pred CceEEEeeeccCcccCCeeecCC-CCCcccEEeccC-cccccCCCCceeecCCCChhhHHHHHHhCCCccccCCCCCccc
Q 003799 414 TKLVIKKTLAGSDLENCRYVHPV-DNRQCPVVIGGD-YITTESGTGLVHTAPGHGQEDYVTSLKYGLPILSPVDDEGKFT 491 (794)
Q Consensus 414 ~~~~~~~~~~G~~L~g~~~~~Pl-~~~~~pvvi~~~-~V~~~~GTG~Vh~aPaHg~~D~~~~~~~gl~i~~~vd~~G~~~ 491 (794)
++|+|++|.||+ +++.+|| |+++ ||++++|||+||++||||++||+++++||||++++||++|+++
T Consensus 281 -----------~~l~G~~~~~Pl~~~~~ipi-i~~~~~V~~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~~i~~~G~~~ 348 (995)
T PTZ00419 281 -----------KKLHGKELIHPFIPDRKIPI-IADDELVDMEFGTGAVKITPAHDPNDYEIAKRHNLPFINIFTLDGKIN 348 (995)
T ss_pred -----------HHhcCCEEECCccCCCEEEE-EeCCcccCCCcCCCCeEeCCCCChHHHHHHHHcCCCeeeeeCCCceEc
Confidence 157899999999 8999999 6789 9999999999999999999999999999999999999999999
Q ss_pred cccCCCCCccccccchHHHHHHHHhcCCcccccccccccccccCCCCcEEEcccCccccchhhHHHHHHhhhc--Ceeec
Q 003799 492 EEAGKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTKKPTIFRATEQWFASVEGFRQAAMDAIG--QVKWV 569 (794)
Q Consensus 492 ~~~~~~~G~~v~~ea~~~ii~~L~~~g~l~~~~~~~h~yp~~WRt~~pii~r~t~QWfi~~~~~~~~~l~~i~--~v~~~ 569 (794)
.++|+|.|+.+. +|++.|++.|++.|++++.+.|.|+||||||||+||++++++|||++++.++++++++++ .++|+
T Consensus 349 ~~~~~~~Gl~~~-~ar~~ii~~L~~~g~l~~~~~~~~~~p~~~R~~~~ie~~~~~QWFi~~~~~~~~al~~v~~~~i~~~ 427 (995)
T PTZ00419 349 ENGGEFAGMHRF-DCRRKIEEELKEMGLLRDKVPNPMRLPRCSRSGDIVEPMLIPQWYVNCKDMAKRAVEAVRNGELKII 427 (995)
T ss_pred CCCcccCCCCHH-HHHHHHHHHHHhcCCEEeeEEeecCCCEeCCCCCEEEEEecCeeeEecHHHHHHHHHHhhcCCeEEE
Confidence 999999999996 999999999999999999999999999999999999999999999999999999999985 35444
Q ss_pred CCC-----------------------------------------------------------------------------
Q 003799 570 PPQ----------------------------------------------------------------------------- 572 (794)
Q Consensus 570 P~~----------------------------------------------------------------------------- 572 (794)
|+.
T Consensus 428 P~~~~~~~~~wl~~l~DWcISRQr~WG~pIP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (995)
T PTZ00419 428 PSSHENVWYHWLENIQDWCISRQLWWGHRIPAYRVISKGPETDPSDEEPWVVARSEEEALEKAKKKFGLSEEDFELEQDE 507 (995)
T ss_pred ChHHHHHHHHHHhccccceeeeecccCceeeEEEeCCCCccccCCCCceEEEcCCHHHHHhhhccccCCccccCCeEECC
Confidence 431
Q ss_pred --------------------------------------------------------------------------------
Q 003799 573 -------------------------------------------------------------------------------- 572 (794)
Q Consensus 573 -------------------------------------------------------------------------------- 572 (794)
T Consensus 508 DVlDtWFdS~l~p~~~~g~p~~~~~~~~~~P~d~~~~G~Dii~~W~arm~~~~~~~~~~~Pfk~v~~HG~v~d~~G~KMS 587 (995)
T PTZ00419 508 DVLDTWFSSGLFPFSTLGWPDQTDDLQRFFPTSLLETGSDILFFWVARMVMMSLHLTDKLPFKTVFLHAMVRDSQGEKMS 587 (995)
T ss_pred ceEEEEEeCCHHHHHHhCCCCChHHHhhcCCCcEEEechhHHhHHHHHHHHHHHHhcCCCChHHHhccceEECCCCCCcc
Confidence
Q ss_pred -----------CC-------------------------------------CCCCCchhhhhhhhc-CCCCceecChHHHH
Q 003799 573 -----------EA-------------------------------------PGYGADVLRLWVSSV-DYTGDVMIGPQVLR 603 (794)
Q Consensus 573 -----------~~-------------------------------------~~yGaD~lRl~las~-~~~~Di~~s~~~l~ 603 (794)
++ ++||||++|||+++. ..+.|++|+.+.+.
T Consensus 588 KSlGNvIdP~~ii~~~~~~~l~~~~~~~~~~~~e~~~~~~~~~~~f~~gi~~yGaDalR~~l~~~~~~~~Di~~~~~~v~ 667 (995)
T PTZ00419 588 KSKGNVIDPLEVIEGISLQDLNQKLYEGNLPEKEIKRAIELQKKEFPNGIPECGTDALRFGLLAYTQQGRNINLDINRVV 667 (995)
T ss_pred cCCCCcCChHHHhcccchhhHHHhhhccccchhhhhhHhhhhhccCCCCCcccCcHHHHHHHHhcCCCCCCccccHHHHH
Confidence 22 289999999999865 66789999999999
Q ss_pred HHHHHHHHHHhHHHHHHhcccCCCCCCC------cCCCCCChhhHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Q 003799 604 QMSDIYRKLRGTLRYLLGNLHDWRVGNS------ISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIV 677 (794)
Q Consensus 604 ~~~~~~~kl~Nt~rfll~nl~~~~~~~~------~~~~~l~~~D~~il~~l~~lv~~v~~~~e~y~f~~ai~~l~~f~~~ 677 (794)
...++++||||++||+++++.++.+... .+..++..+|+|+++++++++++++++|++|+|+.|++.+++|++.
T Consensus 668 ~~~~f~nklwN~~rf~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~wIls~L~~~i~~v~~~~e~y~f~~A~~~i~~F~~~ 747 (995)
T PTZ00419 668 GYRHFCNKLWNAVKFALMKLLKDFNLPNSTLFKPNNVESLPWEDKWILHRLNVAIKEVTEGFKEYDFSEATQATYNFWLY 747 (995)
T ss_pred HHHHHHHHHHHHHHHHHhcccccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 9999999999999999999876543211 1123456789999999999999999999999999999999999999
Q ss_pred hhhHHHHHhhccccccCCCChHhHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhCCCCccccCCCCCCceeecCCCCC
Q 003799 678 DLSNFYFDVAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAAEFVFESKWPVL 757 (794)
Q Consensus 678 ~lsn~Yle~~K~rly~~~~d~~~r~s~~~vL~~iL~~l~~lLaP~~P~~aEEiw~~L~~~~~~~~~~~~~sV~~~~wP~~ 757 (794)
++|||||+.+|+|++ ...++..+++++++|+++|+.+++||+|||||+|||||++|+.. ....+||+.++||++
T Consensus 748 ~~~n~Yie~~K~~l~-~~~~~~~~~~~~~~L~~vL~~~l~LL~PfmPfitEElw~~L~~~-----~~~~~si~~~~~P~~ 821 (995)
T PTZ00419 748 ELCDVYLELIKPRLS-KQSDGERKQHAQDVLHTVLDIGLRLLHPMMPFITEELYQRLPNY-----LRKSESISIAKYPQP 821 (995)
T ss_pred hhHHHHHHHhhhhhh-cCCCcHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhcc-----CCCCCeeeccCCCCC
Confidence 999999999999994 33345557789999999999999999999999999999999742 011369999999999
Q ss_pred CcccCCCChhHHHHHHHHHHHHHHHHHHHhhcCCC
Q 003799 758 DEKWRTFPVGEIYFWGKILEVIVVVTYLNETEGFS 792 (794)
Q Consensus 758 ~e~~~~~~~~~~~~~~~i~~lR~~v~~~~e~~~~~ 792 (794)
++.|.+ ++++..++.++++-..++.+....+++
T Consensus 822 ~~~~~d--~~~e~~~~~~~~ii~~iR~~r~~~~i~ 854 (995)
T PTZ00419 822 NPGWNN--EALDEEMKIIMSIVKSIRSLIATLGIP 854 (995)
T ss_pred CcccCC--HHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 887775 666777788877777777777766653
No 15
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=100.00 E-value=5.8e-115 Score=1065.27 Aligned_cols=595 Identities=24% Similarity=0.392 Sum_probs=522.5
Q ss_pred cCCCCCCcccccHHHHHHHhhcCcchhccccCCCCcEEEEcCCCCCCCcccchHHHhHHHHHHHHHHHHhCCCeeEEecc
Q 003799 116 TFGMRANALVREPEIHKLWDDHQVFLRVADKNDGENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPG 195 (794)
Q Consensus 116 ~f~~r~n~~~~E~~~~~~W~~~~~~~~~~~~~~~~~f~i~~~pPy~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G 195 (794)
.++.++|+..+|++|+++|+++++|++...+.++++|+|++||||+||.|||||++|++++|+++||+||+||+|+|+||
T Consensus 14 ~~~~~y~~~~iE~~~~~~W~~~~~f~~~~~~~~~~~f~i~~pPP~~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~vl~~~G 93 (1052)
T PRK14900 14 ELAKGYEHREVEARWYPFWQERGYFHGDEHDRTRPPFSIVLPPPNVTGSLHLGHALTATLQDVLIRWKRMSGFNTLWLPG 93 (1052)
T ss_pred ccCCCCCHHHHHHHHHHHHHHCCCccCCcccCCCCCEEEecCCCCCCCcchHHHHHhhHHHHHHHHHHHhcCCcccCCCC
Confidence 35667889999999999999999999853334678999999999999999999999999999999999999999999999
Q ss_pred ccCCCchHHHHHHhhchh---hhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCCccccCChHHHHHHHHHHH
Q 003799 196 WDCHGLPIELKVLQSLDE---DAKKDLTPSKLRAKAAKFAKATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQIEVFG 272 (794)
Q Consensus 196 ~D~hGlpie~~~~k~~~~---~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~lGi~~dwd~~~~T~d~~~~~~v~~~f~ 272 (794)
|||||+|+|.++++.++. ....++++++|+++|++|++++++.++++|++||++.||+++|+|+||.|.+.++++|.
T Consensus 94 ~D~~Glp~e~~ve~~l~~~~~~~~~~~~~e~f~~~~~~~~~~~~~~~~~~~~~lG~s~Dw~~~~~T~d~~~~~~v~~~F~ 173 (1052)
T PRK14900 94 TDHAGIATQMIVEKELKKTEKKSRHDLGREAFLERVWAWKEQYGSRIGEQHKALGASLDWQRERFTMDEGLSRAVREVFV 173 (1052)
T ss_pred CCccchHHHHHHHHHhhhccCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhchheecCCCcCcCCHHHHHHHHHHHH
Confidence 999999999999987742 23457889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCeeecccCceeccCCCccccccccccCCcccccccceeEEeccCCCCcccccccccCCccceeccCCCCccccc
Q 003799 273 QMSLQGYIYRGKKPVHWSPSSRTALAEAELEYPEGHVSRSIYAVFRMVSAPPSTSGLLNEFLPDLGLAVWTTTPWTVPAN 352 (794)
Q Consensus 273 ~L~~kGlIy~~~~~v~w~~~~~t~Lae~Evey~e~~~~~~~~v~F~l~~~~~~~~~~l~~~~~~~~l~iwTT~PwTi~~n 352 (794)
+|+++||||++.++|+|||.|+|+|||+||+|.+-+.+.+.|++|++.+. +.+++|||||||||+||
T Consensus 174 ~L~~~Gliyr~~~~v~wcp~~~T~Lsd~Ev~~~e~~~~~~~~i~f~l~~~-------------~~~l~vaTTrPeTl~~~ 240 (1052)
T PRK14900 174 RLHEEGLIYREKKLINWCPDCRTALSDLEVEHEEAHQGELWSFAYPLADG-------------SGEIVVATTRPETMLGD 240 (1052)
T ss_pred HHHHCCCEEeccceeccCCCCCCCccHHHhcccCCCCCeEEEEEEEecCC-------------CcEEEEEECchhhhhcc
Confidence 99999999999999999999999999999998654566777899999541 24799999999999999
Q ss_pred cEEEECCCcceeeeeecccccCCCCCcCCCCCCCCCcccCCcceEeeecccchHHHHHhcCCceEEEeeeccCcccCCee
Q 003799 353 AAVAVNAKLQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFIIVASDLVPTLEAKWGTKLVIKKTLAGSDLENCRY 432 (794)
Q Consensus 353 ~av~v~p~~~Y~~v~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~G~~L~g~~~ 432 (794)
+||||||+++.. ++|+|++|
T Consensus 241 ~avaV~P~~~~y------------------------------------------------------------~~L~G~~~ 260 (1052)
T PRK14900 241 TAVAVHPLDPRY------------------------------------------------------------MALHGKKV 260 (1052)
T ss_pred eeEEECCCcHHH------------------------------------------------------------HHhcCCEE
Confidence 999999997421 15789999
Q ss_pred ecCCCCCcccEEeccCcccccCCCCceeecCCCChhhHHHHHHhCCCccccCCCCCccccccCCCCCccccccchHHHHH
Q 003799 433 VHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPILSPVDDEGKFTEEAGKFSGLDVLGDGNVAVVK 512 (794)
Q Consensus 433 ~~Pl~~~~~pvvi~~~~V~~~~GTG~Vh~aPaHg~~D~~~~~~~gl~i~~~vd~~G~~~~~~~~~~G~~v~~ea~~~ii~ 512 (794)
.||++++.+||+-+.++|++++|||+||++||||++||+++++||||++++||++|+|+++.|+|.|++++ +|++.|++
T Consensus 261 ~~Pl~~~~ipIi~d~~~vd~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~~id~~G~~~~~~~~~~Gl~~~-ear~~Ii~ 339 (1052)
T PRK14900 261 RHPITGRTFPIVADAILVDPKFGTGAVKVTPAHDFNDFEVGKRHGLEMITVIGPDGRMTAEAGPLAGLDRF-EARKEVKR 339 (1052)
T ss_pred ECCCCCCeeEEEecccccCcCCCCCeEEecCCCChhHHHHHHHcCCCccceECCCcEEecCCcccCCcCHH-HHHHHHHH
Confidence 99999999999423358999999999999999999999999999999999999999999988999999996 99999999
Q ss_pred HHHhcCCcccccccccccccccCCCCcEEEcccCccccchhhHHHHHHhhhcC--eeecCCC------------------
Q 003799 513 YLDEQMSLIMEEPYEHKYPYDWRTKKPTIFRATEQWFASVEGFRQAAMDAIGQ--VKWVPPQ------------------ 572 (794)
Q Consensus 513 ~L~~~g~l~~~~~~~h~yp~~WRt~~pii~r~t~QWfi~~~~~~~~~l~~i~~--v~~~P~~------------------ 572 (794)
.|++.|++++.+.|.|+|||||||++||++++++|||++++.+++++++.+++ +.|+|+.
T Consensus 340 ~L~~~g~l~~~~~~~h~~~~c~R~~~~ie~~~s~qWFi~l~~~k~~~~~~v~~~~~~~~P~~~~~~~~~wl~~l~DW~IS 419 (1052)
T PRK14900 340 LLAEQGLDRGAKPHVLPLGRCQRSATILEPLLSDQWYVRIEPLARPAIEAVEQGRTRFIPEQWTNTYMAWMRNIHDWCIS 419 (1052)
T ss_pred HHHhCCCeecceeeeccCceeCCCCceEEEEeccceeeehHHHHHHHHHHHhcCCcEEEChHHHHHHHHHHhcCccceEE
Confidence 99999999999999999999999999999999999999999999999999853 6665552
Q ss_pred --------------------------------------------------------------------------------
Q 003799 573 -------------------------------------------------------------------------------- 572 (794)
Q Consensus 573 -------------------------------------------------------------------------------- 572 (794)
T Consensus 420 Rqr~WG~PIP~w~~~~~~~~v~~~~~~~~~~~~~~~~~~~~dVlDvWFdS~l~y~s~~g~p~~~~~~~~~~P~d~~~~G~ 499 (1052)
T PRK14900 420 RQLWWGHQIPAWYCPDGHVTVARETPEACSTCGKAELRQDEDVLDTWFSSGLWPFSTMGWPEQTDTLRTFYPTSVMETGH 499 (1052)
T ss_pred eecCCCceeCeEEcCCCcEEecccccccccccCccceecCCceEEEEEcCChHHHHHHcCCCchHHHHhhCCchhhcccc
Confidence
Q ss_pred ----------------------------------------------------CCCCCCCchhhhhhhhc-CCCCceecCh
Q 003799 573 ----------------------------------------------------EAPGYGADVLRLWVSSV-DYTGDVMIGP 599 (794)
Q Consensus 573 ----------------------------------------------------~~~~yGaD~lRl~las~-~~~~Di~~s~ 599 (794)
++++||+|+||||+++. .+++|++|++
T Consensus 500 Dii~~W~a~~l~~~~~~~~~~Pfk~V~~hG~v~d~~G~KMSKSkGNvIdP~dvIe~yGaDalR~~L~~~~~~g~D~~fs~ 579 (1052)
T PRK14900 500 DIIFFWVARMMMMGLHFMGEVPFRTVYLHPMVRDEKGQKMSKTKGNVIDPLVITEQYGADALRFTLAALTAQGRDIKLAK 579 (1052)
T ss_pred cHHhHHHHHHHHHHHHhcCCCccceeEecccEECCCCCCccCCCCCCCCHHHHHHHhCcHHHHHHHHhcCCCCCCCcccH
Confidence 33589999999999865 7788999999
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhcccCCCCCCCcC-CCCCChhhHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHh
Q 003799 600 QVLRQMSDIYRKLRGTLRYLLGNLHDWRVGNSIS-YDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVD 678 (794)
Q Consensus 600 ~~l~~~~~~~~kl~Nt~rfll~nl~~~~~~~~~~-~~~l~~~D~~il~~l~~lv~~v~~~~e~y~f~~ai~~l~~f~~~~ 678 (794)
+.+....+++++|||+.||++.++.+|.+....+ ...+...|+|++++++.++++++++|++|+|+.|++.+++|++++
T Consensus 580 ~~l~~~~~f~nkl~N~~R~~~~~~~~~~~~~~~~~~~~~~~~D~wils~l~~~i~~v~~~~e~y~f~~A~~~i~~f~~~~ 659 (1052)
T PRK14900 580 ERIEGYRAFANKLWNASRFALMNLSGYQERGEDPARLARTPADRWILARLQRAVNETVEALEAFRFNDAANAVYAFVWHE 659 (1052)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 9999999999999999999988887775442222 234577899999999999999999999999999999999999989
Q ss_pred hhHHHHHhhccccccCCCChHhHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhCCCCccccCCCCCCceeecCCCCCC
Q 003799 679 LSNFYFDVAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAAEFVFESKWPVLD 758 (794)
Q Consensus 679 lsn~Yle~~K~rly~~~~d~~~r~s~~~vL~~iL~~l~~lLaP~~P~~aEEiw~~L~~~~~~~~~~~~~sV~~~~wP~~~ 758 (794)
+||+||+.+|+|+|.+ ++..+++++.+|+++|+.+++||+|||||+|||||++|+... ......+||+.++||+++
T Consensus 660 ~~n~Yie~~k~~l~~~--~~~~~~~~~~~L~~~L~~l~~LLaPfmP~~aEeiw~~L~~~~--~~~~~~~SV~~~~wP~~~ 735 (1052)
T PRK14900 660 LCDWYIELAKEALASE--DPEARRSVQAVLVHCLQTSYRLLHPFMPFITEELWHVLRAQV--GASAWADSVLAAEYPRKG 735 (1052)
T ss_pred hhHHHHHhccHhhccC--CHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhcccc--ccCCCCCceeecCCCCCC
Confidence 9999999999999875 344566788899999999999999999999999999997420 000012699999999987
Q ss_pred cccCCCChhHHHHHHHHHHHHHHHHHHHhhcCCC
Q 003799 759 EKWRTFPVGEIYFWGKILEVIVVVTYLNETEGFS 792 (794)
Q Consensus 759 e~~~~~~~~~~~~~~~i~~lR~~v~~~~e~~~~~ 792 (794)
+ .+ +++++.++.++++-..++.+....+++
T Consensus 736 ~--~d--~~~e~~~~~v~~ii~~iR~~R~~~~i~ 765 (1052)
T PRK14900 736 E--AD--EAAEAAFRPVLGIIDAVRNIRGEMGIP 765 (1052)
T ss_pred c--cc--HHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 5 23 556666666666666666666666553
No 16
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=100.00 E-value=3.7e-114 Score=1051.33 Aligned_cols=586 Identities=28% Similarity=0.475 Sum_probs=528.4
Q ss_pred CCCCCcccccHHHHHHHhhcCcchhccccCCCCcEEEEcCCCCCCCcccchHHHhHHHHHHHHHHHHhCCCeeEEecccc
Q 003799 118 GMRANALVREPEIHKLWDDHQVFLRVADKNDGENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWD 197 (794)
Q Consensus 118 ~~r~n~~~~E~~~~~~W~~~~~~~~~~~~~~~~~f~i~~~pPy~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G~D 197 (794)
+..+|+..+|++|+++|+++++|++..+ .++++|+|++|||||||.||||||+|++++|+++||+||+||+|+|++|||
T Consensus 2 ~~~y~~~~iE~~~~~~W~~~~~f~~~~~-~~~~~f~i~~ppPy~nG~lHiGH~~~~~~~D~~~Ry~rm~G~~vl~~~G~D 80 (861)
T TIGR00422 2 PKDYDPHEVEKKWYKKWEKSGFFKPDGN-SNKPPFCIDIPPPNVTGSLHIGHALNWSIQDIIARYKRMKGYNVLWLPGTD 80 (861)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCcccCcc-cCCCeEEEEeCCCCCCCCCcHHHhHHHHHHHHHHHHHHhcCCcccCCCCcC
Confidence 4568889999999999999999998654 457889999999999999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHhhchhh--hhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCCccccCChHHHHHHHHHHHHHH
Q 003799 198 CHGLPIELKVLQSLDED--AKKDLTPSKLRAKAAKFAKATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMS 275 (794)
Q Consensus 198 ~hGlpie~~~~k~~~~~--~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~lGi~~dwd~~~~T~d~~~~~~v~~~f~~L~ 275 (794)
|||+|||.+++|.++.. ...+++.++|+++|++|++++.+.++++|++||+|.||+++|+||||.|.++|+++|.+|+
T Consensus 81 ~~Glp~e~~vek~~~~~g~~~~~~~~e~f~~~~~~~~~~~~~~~~~~~~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~~L~ 160 (861)
T TIGR00422 81 HAGIATQVKVEKKLGAEGKTKHDLGREEFREKIWEWKEESGGTIKNQIKRLGASLDWSRERFTMDEGLSKAVKEAFVRLY 160 (861)
T ss_pred cCCCcHHHHHHHHhcccCCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCeeeecCCCcCcCCHHHHHHHHHHHHHHH
Confidence 99999999999887533 3456788999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCeeecccCceeccCCCccccccccccCCcccccccceeEEeccCCCCcccccccccCCccceeccCCCCccccccEE
Q 003799 276 LQGYIYRGKKPVHWSPSSRTALAEAELEYPEGHVSRSIYAVFRMVSAPPSTSGLLNEFLPDLGLAVWTTTPWTVPANAAV 355 (794)
Q Consensus 276 ~kGlIy~~~~~v~w~~~~~t~Lae~Evey~e~~~~~~~~v~F~l~~~~~~~~~~l~~~~~~~~l~iwTT~PwTi~~n~av 355 (794)
++|+||++.++|+|||.|+|+||++||+|++ ..+++.|++|++.+. ++.+++|||||||||+||+||
T Consensus 161 ~~GlIy~~~~~v~wcp~~~t~lsd~Ev~~~~-~~~~~~~i~f~~~~~------------~~~~l~vaTtrPeTl~~~~av 227 (861)
T TIGR00422 161 EKGLIYRGEYLVNWDPKLNTAISDIEVEYKE-VKGKLYYIRYPLANG------------SKDYLVVATTRPETMFGDTAV 227 (861)
T ss_pred HCCCeeecCcccccCCCCCCcchHhHhhccc-ccceEEEEEEEecCC------------CCCEEEEEeCCcchhhhCeEE
Confidence 9999999999999999999999999999965 788999999999642 125899999999999999999
Q ss_pred EECCCcceeeeeecccccCCCCCcCCCCCCCCCcccCCcceEeeecccchHHHHHhcCCceEEEeeeccCcccCCeeecC
Q 003799 356 AVNAKLQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFIIVASDLVPTLEAKWGTKLVIKKTLAGSDLENCRYVHP 435 (794)
Q Consensus 356 ~v~p~~~Y~~v~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~G~~L~g~~~~~P 435 (794)
||||++.+- ++|+|++|.||
T Consensus 228 ~V~P~~~ry------------------------------------------------------------~~l~g~~~~~P 247 (861)
T TIGR00422 228 AVHPEDERY------------------------------------------------------------KHLIGKKVILP 247 (861)
T ss_pred EECCCchHH------------------------------------------------------------HHhcCCEEEcC
Confidence 999997421 15889999999
Q ss_pred CCCCcccEEeccCcccccCCCCceeecCCCChhhHHHHHHhCCCccccCCCCCccccccCCCCCccccccchHHHHHHHH
Q 003799 436 VDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPILSPVDDEGKFTEEAGKFSGLDVLGDGNVAVVKYLD 515 (794)
Q Consensus 436 l~~~~~pvvi~~~~V~~~~GTG~Vh~aPaHg~~D~~~~~~~gl~i~~~vd~~G~~~~~~~~~~G~~v~~ea~~~ii~~L~ 515 (794)
++++++|| |+++||++++|||+||++|+||++||+++++||||+++++|++|.+++++|.|.|+.++ +|+++|++.|+
T Consensus 248 ~~~~~ipi-i~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~id~~G~~~~~~~~~~G~~~~-~ar~~i~~~L~ 325 (861)
T TIGR00422 248 LTGRKIPI-IADEYVDMEFGTGAVKVTPAHDFNDYEWGKRHNLEFINILDEDGLLNENAGKYQGLTRF-EARKKIVEDLK 325 (861)
T ss_pred CCCCccee-eecCCCCcccCCCceEecCCCChHHHHHHHHcCCCccceeCCCCeEcCCCcccCCcCHH-HhHHHHHHHHH
Confidence 99999999 78999999999999999999999999999999999999999999999999999999996 99999999999
Q ss_pred hcCCcccccccccccccccCCCCcEEEcccCccccchhhHHHHHHhhhc--CeeecCCC---------------------
Q 003799 516 EQMSLIMEEPYEHKYPYDWRTKKPTIFRATEQWFASVEGFRQAAMDAIG--QVKWVPPQ--------------------- 572 (794)
Q Consensus 516 ~~g~l~~~~~~~h~yp~~WRt~~pii~r~t~QWfi~~~~~~~~~l~~i~--~v~~~P~~--------------------- 572 (794)
+.|.+++.+++.|+|||||||++|+++++++|||++++.+++++++.++ +++|+|+.
T Consensus 326 ~~g~l~~~~~~~~~~p~~~R~g~~ve~~~~~qWFi~~~~~~~~~~~~~~~~~i~~~P~~~~~~~~~wl~~l~DW~ISRq~ 405 (861)
T TIGR00422 326 EEGLLVKIEPHTHNVGTCWRSGTVVEPLLSKQWFVKVEKLADKALEAAEEGEIKFVPKRMEKRYLNWLRNIKDWCISRQL 405 (861)
T ss_pred hCCCeeeeeeeeccCCEeCCCCCEEEEEecCcceEecHHHHHHHHHHhhcCCeEEEChHHHHHHHHHHhccccceeeeec
Confidence 9999999999999999999999999999999999999999999999986 57777764
Q ss_pred --------------------------------------------------------------------------------
Q 003799 573 -------------------------------------------------------------------------------- 572 (794)
Q Consensus 573 -------------------------------------------------------------------------------- 572 (794)
T Consensus 406 ~WG~piP~w~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~dVlDtWFdS~l~~~s~~g~p~~~~~~~~~~P~d~~~~G 485 (861)
T TIGR00422 406 IWGHRIPVWYCKECGEVYVAKEEPLPDDKTNTGPSVELEQDTDVLDTWFSSSLWPFSTLGWPDETKDLKKFYPTDLLVTG 485 (861)
T ss_pred ccCCcceEEEECCCCcEEeccchHHhhhhhccCCcccEEECCCcccceeccchHHHHHhCCCCChHHHhhcCCcceeecc
Confidence
Q ss_pred -----------------------------------------------------CCCCCCCchhhhhhhhcCC-CCceecC
Q 003799 573 -----------------------------------------------------EAPGYGADVLRLWVSSVDY-TGDVMIG 598 (794)
Q Consensus 573 -----------------------------------------------------~~~~yGaD~lRl~las~~~-~~Di~~s 598 (794)
++++||+|++|||+++... ++|++|+
T Consensus 486 ~Dii~fw~~~~~~~~~~~~~~~Pfk~v~~hG~v~d~~G~KMSKS~GN~i~p~~~i~~ygaDalR~~l~~~~~~~~d~~f~ 565 (861)
T TIGR00422 486 YDIIFFWVARMIFRSLALTGQVPFKEVYIHGLVRDEQGRKMSKSLGNVIDPLDVIEKYGADALRFTLASLVTPGDDINFD 565 (861)
T ss_pred hhhhhHHHHHHHHHHHHhcCCCchheEEEeeEEECCCCCCCCcCCCCCCCHHHHHHHhChHHHHHHHHhCCCCCCCceec
Confidence 2358999999999987654 7899999
Q ss_pred hHHHHHHHHHHHHHHhHHHHHHhcccCCCCCCCcCCCCCChhhHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHh
Q 003799 599 PQVLRQMSDIYRKLRGTLRYLLGNLHDWRVGNSISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVD 678 (794)
Q Consensus 599 ~~~l~~~~~~~~kl~Nt~rfll~nl~~~~~~~~~~~~~l~~~D~~il~~l~~lv~~v~~~~e~y~f~~ai~~l~~f~~~~ 678 (794)
++.+....++++||||+.||+..++..+..- ......+..+|+|++++++.++++++++|++|+|+.|++.+++|++++
T Consensus 566 ~~~~~~~~~~~nkl~N~~rf~~~~~~~~~~~-~~~~~~~~~~D~wil~~l~~~~~~v~~~~e~~~f~~A~~~l~~f~~~~ 644 (861)
T TIGR00422 566 WKRVESARNFLNKLWNASRFVLMNLSDDLEL-SGGEEKLSLADRWILSKLNRTIKEVRKALDKYRFAEAAKALYEFIWND 644 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccccc-ccccccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 9999999999999999999998877654110 011223577899999999999999999999999999999999999888
Q ss_pred hhHHHHHhhccccccCCCChHhHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhCCCCccccCCCCCCceeecCCCCCC
Q 003799 679 LSNFYFDVAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAAEFVFESKWPVLD 758 (794)
Q Consensus 679 lsn~Yle~~K~rly~~~~d~~~r~s~~~vL~~iL~~l~~lLaP~~P~~aEEiw~~L~~~~~~~~~~~~~sV~~~~wP~~~ 758 (794)
+||||++.+|+|++.++ ...+++++.+|+++|+.+++||+|||||+|||||++|+.. .+||+.++||+++
T Consensus 645 ~~n~Yie~~k~~~~~~~--~~~~~~~~~~l~~~l~~~~~lL~Pf~P~itEelw~~L~~~--------~~si~~~~~P~~~ 714 (861)
T TIGR00422 645 FCDWYIELVKYRLYNGN--EAEKKAARDTLYYVLDKALRLLHPFMPFITEEIWQHFKEG--------ADSIMLQSYPVVD 714 (861)
T ss_pred HHHHHHHHhHHHHcCCC--cHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhCccc--------CCceeecCCCCcc
Confidence 99999999999998653 3456788999999999999999999999999999999742 3699999999999
Q ss_pred cccCCCChhHHHHHHHHHHHHHHHHHHHhhcCCC
Q 003799 759 EKWRTFPVGEIYFWGKILEVIVVVTYLNETEGFS 792 (794)
Q Consensus 759 e~~~~~~~~~~~~~~~i~~lR~~v~~~~e~~~~~ 792 (794)
+.+.+ ++++..++.++++-..++.+....+++
T Consensus 715 ~~~~d--~~~e~~~~~l~~ii~~iR~~r~~~~i~ 746 (861)
T TIGR00422 715 AEFVD--EEAEKAFELLKEIIVSIRNLKAESNIP 746 (861)
T ss_pred cccCC--HHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 88776 667777788877777777777776654
No 17
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=2.1e-112 Score=1028.85 Aligned_cols=583 Identities=25% Similarity=0.440 Sum_probs=523.9
Q ss_pred ccCCCCCCcccccHHHHHHHhhcCcchhccccCCCCcEEEEcCCCCCCCcccchHHHhHHHHHHHHHHHHhCCCeeEEec
Q 003799 115 TTFGMRANALVREPEIHKLWDDHQVFLRVADKNDGENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVP 194 (794)
Q Consensus 115 t~f~~r~n~~~~E~~~~~~W~~~~~~~~~~~~~~~~~f~i~~~pPy~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~ 194 (794)
|.|++++|+..+|++||++|+++++|++..+. ++++|+|++|||||||.|||||++|++++|+++||+||+||+|+|++
T Consensus 4 ~~~~~~~~~~~~E~~~~~~W~~~~~f~~~~~~-~~~~f~i~~ppPy~nG~lHiGH~~~~~~~D~~~R~~r~~G~~v~~~~ 82 (800)
T PRK13208 4 PELPKKYDPEELEEKWQKIWEEEGTYKFDPDE-RKPVYSIDTPPPTVSGSLHIGHVFSYTHTDFIARYQRMRGYNVFFPQ 82 (800)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCccccccc-CCCcEEEecCcCCCCCCccHHHHHhHHHHHHHHHHHHcCCCcccCCC
Confidence 56899999999999999999999999986543 57899999999999999999999999999999999999999999999
Q ss_pred cccCCCchHHHHHHhhchhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCCccccCChHHHHHHHHHHHHH
Q 003799 195 GWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKAAKFAKATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQM 274 (794)
Q Consensus 195 G~D~hGlpie~~~~k~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~lGi~~dwd~~~~T~d~~~~~~v~~~f~~L 274 (794)
||||||+|||.+++|.++.. ..++++++|++.|++|++++++.++++|++||++.||+++|+|+||.|.++++++|.+|
T Consensus 83 G~D~~Glpie~~~ek~~g~~-~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~lg~s~Dw~~~~~T~d~~~~~~v~~~f~~L 161 (800)
T PRK13208 83 GWDDNGLPTERKVEKYYGIR-KDDISREEFIELCRELTDEDEKKFRELWRRLGLSVDWSLEYQTISPEYRRISQKSFLDL 161 (800)
T ss_pred CcCCCcchHHHHHHHHhCCC-cccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCeeeccCCCcccCCHHHHHHHHHHHHHH
Confidence 99999999999999866543 34578999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCeeecccCceeccCCCccccccccccCCcccccccceeEEeccCCCCcccccccccCCccceeccCCCCccccccE
Q 003799 275 SLQGYIYRGKKPVHWSPSSRTALAEAELEYPEGHVSRSIYAVFRMVSAPPSTSGLLNEFLPDLGLAVWTTTPWTVPANAA 354 (794)
Q Consensus 275 ~~kGlIy~~~~~v~w~~~~~t~Lae~Evey~e~~~~~~~~v~F~l~~~~~~~~~~l~~~~~~~~l~iwTT~PwTi~~n~a 354 (794)
+++|+||++.++|+|||.|+|+|||+||+|.+ +.+++.||+|++.+ +.+++|||||||||+||+|
T Consensus 162 ~~~Gliy~~~~~v~wcp~~~t~Lsd~ev~~~~-~~~~~~~ikf~~~~--------------~~~l~v~TtrPeTl~g~~a 226 (800)
T PRK13208 162 YKKGLIYRAEAPVLWCPRCETAIAQAEVEYRE-REGKLNYIKFPVED--------------GEEIEIATTRPELLPACVA 226 (800)
T ss_pred HHCCCeeecCcccccCCCCCCccchhhhcccc-ccceEEEEEEEecC--------------CCEEEEEeCCcchhhhCeE
Confidence 99999999999999999999999999999965 78899999999852 2479999999999999999
Q ss_pred EEECCCcceeeeeecccccCCCCCcCCCCCCCCCcccCCcceEeeecccchHHHHHhcCCceEEEeeeccCcccCCeeec
Q 003799 355 VAVNAKLQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFIIVASDLVPTLEAKWGTKLVIKKTLAGSDLENCRYVH 434 (794)
Q Consensus 355 v~v~p~~~Y~~v~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~G~~L~g~~~~~ 434 (794)
|||||+++.. ++|.|+++.|
T Consensus 227 i~v~p~~~~~------------------------------------------------------------~~l~g~~~~~ 246 (800)
T PRK13208 227 VVVHPDDERY------------------------------------------------------------KHLVGKTAIV 246 (800)
T ss_pred EEECCCchHH------------------------------------------------------------HHhcCCEEEc
Confidence 9999997411 1478999999
Q ss_pred CCCCCcccEEeccCcccccCCCCceeecCCCChhhHHHHHHhCCCccccCCCCCccccccCCCCCccccccchHHHHHHH
Q 003799 435 PVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPILSPVDDEGKFTEEAGKFSGLDVLGDGNVAVVKYL 514 (794)
Q Consensus 435 Pl~~~~~pvvi~~~~V~~~~GTG~Vh~aPaHg~~D~~~~~~~gl~i~~~vd~~G~~~~~~~~~~G~~v~~ea~~~ii~~L 514 (794)
|++++++|| ++++||+++.|||+||++|+||++||+++++||||++++||++|++++++|+|.|+++. +|++.|++.|
T Consensus 247 P~~~~~ipi-i~~~~V~~~~GTG~V~~~p~hd~~D~~~~~~~~l~~~~~i~~~G~~~~~~g~~~G~~~~-~a~~~i~~~L 324 (800)
T PRK13208 247 PLFGVEVPI-LADPLVDPDFGTGAVMICTFGDKTDVTWWRELNLPTRIIIDEDGRMTEAAGKLAGLTIE-EARKKIVEDL 324 (800)
T ss_pred CCCCCcceE-ECCCccCCCCCcceEEeCCCCCHHHHHHHHHcCCCcccccCCCceEecCCcccCCCCHH-HHHHHHHHHH
Confidence 999999999 68999999999999999999999999999999999999999999999999999999996 9999999999
Q ss_pred HhcCCcccccccccccccccCCCCcEEEcccCccccchhhHHHHHHhhhcCeeecCCC----------------------
Q 003799 515 DEQMSLIMEEPYEHKYPYDWRTKKPTIFRATEQWFASVEGFRQAAMDAIGQVKWVPPQ---------------------- 572 (794)
Q Consensus 515 ~~~g~l~~~~~~~h~yp~~WRt~~pii~r~t~QWfi~~~~~~~~~l~~i~~v~~~P~~---------------------- 572 (794)
++.|.+++.+.+.|+||||||||+|+++++++|||++++.+++++++.+++++|+|+.
T Consensus 325 ~~~g~~~~~~~~~~~~p~~~r~~~~v~~~~~~qwfl~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~l~~~~~DW~ISRqr 404 (800)
T PRK13208 325 KSGGLLGKQEPIKHNVKFCERCDTPLEILVTRQWFIKVLDLKEELLERGKEINWYPEHMRVRLENWIEGLNWDWCISRQR 404 (800)
T ss_pred HhCCCeeceeeeeccCCccCCCCCEEEEeccceeeEeCHHHHHHHHHhhcCcEEECHHHHHHHHHHHHhcCCCceeeecc
Confidence 9999999999999999999999999999999999999999999999888766655431
Q ss_pred --------------------------------------------------------------------------------
Q 003799 573 -------------------------------------------------------------------------------- 572 (794)
Q Consensus 573 -------------------------------------------------------------------------------- 572 (794)
T Consensus 405 ~WG~pIP~~~~~~~g~~~~~~~~~l~~~~~~d~~~~~~~~~~g~~~~~~~~dvlD~WfdS~~~~~~~~~~~~~~~~~~~~ 484 (800)
T PRK13208 405 YFGTPIPVWYCKDCGHPILPDEEDLPVDPTKDEPPGYKCPQCGSPGFEGETDVMDTWATSSITPLIVTGWERDEDLFEKV 484 (800)
T ss_pred ccCCcceEEEeCCCCCeecCchhhhccCchhhccccccccccCCcCEEecCCEEEEEEeCCchHHHHhCCCCChhhhhhc
Confidence
Q ss_pred --------------------------------------------------------------CCCCCCCchhhhhhhhcC
Q 003799 573 --------------------------------------------------------------EAPGYGADVLRLWVSSVD 590 (794)
Q Consensus 573 --------------------------------------------------------------~~~~yGaD~lRl~las~~ 590 (794)
++++||+|++|||+++++
T Consensus 485 ~P~d~~~~G~Di~~~w~~~~l~~~~~~~~~~Pf~~v~~hg~v~~~~G~KMSKS~GN~i~p~~~i~~yg~D~lR~~l~~~~ 564 (800)
T PRK13208 485 FPMDLRPQGHDIIRTWLFYTILRAYLLTGKLPWKNIMISGMVLDPDGKKMSKSKGNVVTPEELLEKYGADAVRYWAASAR 564 (800)
T ss_pred CCceEEEeecchhhhHHHHHHHHHHHhcCCCCcceEEEeeEEECCCCCCCCCCCCCCCCHHHHHHHcCccHHHHHHhcCC
Confidence 235899999999999889
Q ss_pred CCCceecChHHHHHHHHHHHHHHhHHHHHHhcccCCCCCCCcCCCCCChhhHHHHHHHHHHHHHHHHHHhcccHHHHHHH
Q 003799 591 YTGDVMIGPQVLRQMSDIYRKLRGTLRYLLGNLHDWRVGNSISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQI 670 (794)
Q Consensus 591 ~~~Di~~s~~~l~~~~~~~~kl~Nt~rfll~nl~~~~~~~~~~~~~l~~~D~~il~~l~~lv~~v~~~~e~y~f~~ai~~ 670 (794)
+.+|++|+++.++.+.++++||||++||++ ++.+. ....+..++...|+|++++++.+++++.++|++|+|++|++.
T Consensus 565 ~~~d~~fs~~~~~~~~~~l~kl~N~~r~~~-~~~~~--~~~~~~~~~~~~D~~il~~l~~~i~~v~~~~e~~~f~~A~~~ 641 (800)
T PRK13208 565 LGSDTPFDEKQVKIGRRLLTKLWNASRFVL-HFSAD--PEPDKAEVLEPLDRWILAKLAKVVEKATEALENYDFAKALEE 641 (800)
T ss_pred CCCCceecHHHHHHHHHHHHHHHHHHHHHH-hcccc--cccCccccCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 999999999999999999999999999986 33320 111112346788999999999999999999999999999999
Q ss_pred HHHHHHHhhhHHHHHhhccccccCCCChHhHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhCCCCccccCCCCCCcee
Q 003799 671 IQRFIIVDLSNFYFDVAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAAEFVF 750 (794)
Q Consensus 671 l~~f~~~~lsn~Yle~~K~rly~~~~d~~~r~s~~~vL~~iL~~l~~lLaP~~P~~aEEiw~~L~~~~~~~~~~~~~sV~ 750 (794)
+++|+++++||+|++.+|+|+|.++.++ .+++++++|+++|+.+++||+|||||+|||||++|+ . +||+
T Consensus 642 i~~f~~~~~~n~Yie~~k~~~~~~~~~~-~~~~~~~~l~~~l~~l~~LLaPf~P~iaEelw~~L~-~---------~si~ 710 (800)
T PRK13208 642 IESFFWHVFCDDYLELVKSRAYGEDEEE-EQKSARYTLYTVLDTLLRLLAPFLPFITEEVWSWLY-G---------GSVH 710 (800)
T ss_pred HHHHHHHHhhHHHHHHhhHHhcCCCCcH-HHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHhCC-C---------CceE
Confidence 9999998899999999999998765433 266788999999999999999999999999999997 2 4899
Q ss_pred ecCCCCCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhcCCC
Q 003799 751 ESKWPVLDEKWRTFPVGEIYFWGKILEVIVVVTYLNETEGFS 792 (794)
Q Consensus 751 ~~~wP~~~e~~~~~~~~~~~~~~~i~~lR~~v~~~~e~~~~~ 792 (794)
.++||++++.+.+ +++++.++.+.++-..++.+..+.+++
T Consensus 711 ~~~wP~~~~~~~~--~~~~~~~~~v~~ii~~iR~~r~~~~i~ 750 (800)
T PRK13208 711 RASWPEPDEELID--EEDEELGELAKEILSAVRKYKSEAGLS 750 (800)
T ss_pred eccCCCCCccccc--HHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 9999999877654 556677777777777777777666553
No 18
>PLN02959 aminoacyl-tRNA ligase
Probab=100.00 E-value=1.2e-106 Score=992.87 Aligned_cols=611 Identities=22% Similarity=0.314 Sum_probs=502.9
Q ss_pred ccCCCCCCcccccHHHHHHHhhcCcchhccccC---CCCcEEEEcCCCCCCCcccchHHHhHHHHHHHHHHHHhCCCeeE
Q 003799 115 TTFGMRANALVREPEIHKLWDDHQVFLRVADKN---DGENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVR 191 (794)
Q Consensus 115 t~f~~r~n~~~~E~~~~~~W~~~~~~~~~~~~~---~~~~f~i~~~pPy~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~ 191 (794)
..++||+++..+|++||++|+++++|++..+.. ++++|++|+||||+||.||||||+|++++|+++||+||+||+|+
T Consensus 7 ~~~~~r~~l~~iE~k~q~~W~~~~~fe~~~~~~~~~~~~kf~i~~ppPY~NG~lHiGHa~t~t~~D~i~Rykrm~G~~vl 86 (1084)
T PLN02959 7 KSTARRDRLLEIEVAVQKWWEEEKVFEAEAGDEPPKPGEKFFGNFPYPYMNGLLHLGHAFSLSKLEFAAAYHRLRGANVL 86 (1084)
T ss_pred cCCchhcCHHHHHHHHHHHHHhcCCcccCcccccCCCCCcEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHHcCCCccC
Confidence 356899999999999999999999999975422 34889999999999999999999999999999999999999999
Q ss_pred EeccccCCCchHHHHHHhhchh---------------------------hhhcCCCHHHHHHHHHHHHHH----------
Q 003799 192 YVPGWDCHGLPIELKVLQSLDE---------------------------DAKKDLTPSKLRAKAAKFAKA---------- 234 (794)
Q Consensus 192 ~~~G~D~hGlpie~~~~k~~~~---------------------------~~~~~~~~~~~~~~~~~~a~~---------- 234 (794)
|+|||||||+||+..|+|.... ...++.++.+|+++|++++.+
T Consensus 87 fp~G~d~tGlPIe~~aek~~~ei~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~k~~~k~~~~~~~~~~ 166 (1084)
T PLN02959 87 LPFAFHCTGMPIKASADKLAREIQQYGNPPVFPEEDEDEAAAVAAAKAEAEAAAAPPDKFKGKKSKAVAKSGTQKYQWEI 166 (1084)
T ss_pred CCCCcCCCCccHHHHHHHHHHHHHHcCCCcccccccccccccccccccccccccccHHHHHHHHHHHHHHhCCchHHHHH
Confidence 9999999999999998874210 011345678999999999877
Q ss_pred -------------------HH----HHHHHHHHHcCCccCCCCccccCC--hHHHHHHHHHHHHHHHcCCeeecccCcee
Q 003799 235 -------------------TV----KAQMASFKRYGVWADWNNPYLTLD--PEYEAAQIEVFGQMSLQGYIYRGKKPVHW 289 (794)
Q Consensus 235 -------------------~~----~~~~~~~~~lGi~~dwd~~~~T~d--~~~~~~v~~~f~~L~~kGlIy~~~~~v~w 289 (794)
.+ ..++++|++||+++||+++|.|+| |.|+++|+|+|.+|+++|+||+|.+||+|
T Consensus 167 ~~~~~~~~~~i~~f~dp~~~~~yF~~~~~~~~k~lG~~iDW~r~f~T~d~np~y~~~v~wqf~~L~ekG~I~~g~rpv~w 246 (1084)
T PLN02959 167 MRSFGLPDSEIAKFQDPYHWLSYFPPLAKEDLKAFGLGCDWRRSFITTDVNPYYDAFVRWQFRKLKKKGKIVKDKRYTIY 246 (1084)
T ss_pred HhhcCCchhhhhhccCHHHHHHhccHHHHHHHHHhCceEeCCCCcCCCCCChhHHHHHHHHHHHHHHCCCEEecCeeeee
Confidence 22 667999999999999999999999 99999999999999999999999999999
Q ss_pred ccCCCccccccccccCCcccccccce--eEEeccCCCCcccccccccCCccceeccCCCCccccccEEEECCCcceeeee
Q 003799 290 SPSSRTALAEAELEYPEGHVSRSIYA--VFRMVSAPPSTSGLLNEFLPDLGLAVWTTTPWTVPANAAVAVNAKLQYAVVE 367 (794)
Q Consensus 290 ~~~~~t~Lae~Evey~e~~~~~~~~v--~F~l~~~~~~~~~~l~~~~~~~~l~iwTT~PwTi~~n~av~v~p~~~Y~~v~ 367 (794)
||.|+|+|||+|++|++ +.+++.|+ +|++.+........++ ..+.++++|||||||||||+||||||+.+|++++
T Consensus 247 cp~~~t~ladhe~~~~e-~~~~~~y~~ikf~v~~~~~~~~~~~~--~~~~~l~~aTtrPeTl~g~ta~~VnP~~~Y~~~~ 323 (1084)
T PLN02959 247 SPLDGQPCADHDRASGE-GVGPQEYVLIKMEVLPPFPGKLKALE--GKKVFLAAATLRPETMYGQTNCWVLPDGKYGAYE 323 (1084)
T ss_pred CCCCCCCchhhHHhcCC-CCCcceeEEEEEeecCcchhhhhhcC--CCCeEEEEEeCccchhhhheeEEECCCCeEEEEE
Confidence 99999999999999976 67788884 5777542100000011 1346899999999999999999999999999998
Q ss_pred ecccccCCCCCcCCCCCCCCCcccCCcceEeeecccchHHHHHh--cCC--ceEEEeeeccCcccCCeeecCCCCCc-cc
Q 003799 368 IQSLLEGDSAAPANKKSRPGNVLKDQKKVFIIVASDLVPTLEAK--WGT--KLVIKKTLAGSDLENCRYVHPVDNRQ-CP 442 (794)
Q Consensus 368 ~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~iv~~~~~~~~~~~--~~~--~~~~~~~~~G~~L~g~~~~~Pl~~~~-~p 442 (794)
+.+ ++.|||+++++.++.-+ .+. +++++++++|++|+|++|.||+++.+ +|
T Consensus 324 ~~~------------------------~e~~i~s~~~~~~~~~q~~~~~~~~~~~l~~~~G~~L~G~~~~~Pl~~~~~i~ 379 (1084)
T PLN02959 324 IND------------------------TEVFILTARAALNLAYQNFSKVPGKPTCLVELTGYDLIGLPLKSPLAFNEVIY 379 (1084)
T ss_pred ecC------------------------CeEEEEehhhhhhhHHhhhcccCCCcEEEEEEEHHHhCCCEEECCCCCCccee
Confidence 752 57899999999875322 222 57899999999999999999999877 77
Q ss_pred EEeccCcccccCCCCceeecCCCChhhHHH----------HHHhCC--------CccccCCCCCc---------------
Q 003799 443 VVIGGDYITTESGTGLVHTAPGHGQEDYVT----------SLKYGL--------PILSPVDDEGK--------------- 489 (794)
Q Consensus 443 vvi~~~~V~~~~GTG~Vh~aPaHg~~D~~~----------~~~~gl--------~i~~~vd~~G~--------------- 489 (794)
+ ++++||+++.|||+||+|||||++||.+ +++||| +++.+||.+|.
T Consensus 380 i-lp~~~V~~~~GTGvV~~vPah~pdDy~~~~dl~~k~~~~~kygi~~~~~~~~~~i~iid~~g~G~~~a~~~~~~~~i~ 458 (1084)
T PLN02959 380 A-LPMLTILTDKGTGVVTSVPSDSPDDYMALSDLKAKPALRAKYGVKDEWVLPFEVVPIINIPEFGDKSAEKVCEDLKIK 458 (1084)
T ss_pred E-eceEEEeCCCCeeeEEeCCCCCHHHHHHHHhhccchhHHHHcCCCcccccccCCcCccccCCCCcchhHHHHHhhccc
Confidence 8 7999999999999999999999999998 578898 45777777664
Q ss_pred -------------------cccc---cCCCCCccccccchHHHHHHHHhcCCccc-ccccccccccccCCCCcEEEcccC
Q 003799 490 -------------------FTEE---AGKFSGLDVLGDGNVAVVKYLDEQMSLIM-EEPYEHKYPYDWRTKKPTIFRATE 546 (794)
Q Consensus 490 -------------------~~~~---~~~~~G~~v~~ea~~~ii~~L~~~g~l~~-~~~~~h~yp~~WRt~~pii~r~t~ 546 (794)
|+.. .|+|.|+.|. +|++.|++.|++.|.++. .++ ..|+||||++||++++++
T Consensus 459 s~~d~~~l~~a~~~~Y~~~f~~g~m~~g~~~G~~v~-eAr~~Ii~~L~~~G~l~~~~ep---~~pv~~R~g~~~~v~l~~ 534 (1084)
T PLN02959 459 SQNDKEKLAEAKRLTYLKGFTDGTMLVGEYAGRKVQ-EAKPLIKKKLIEAGQAILYSEP---EKKVMSRSGDECVVALTD 534 (1084)
T ss_pred ccchhhHHHHHhhhhhhhccccccccCcCcCCcCHH-HHHHHHHHHHHhCCCceeeeEc---CCCeEECCCCEEEEeecC
Confidence 4444 5789999996 999999999999998774 454 368999999999999999
Q ss_pred ccccchh--hHHHHHHhhhcCeeecCCC----------------------------------------------------
Q 003799 547 QWFASVE--GFRQAAMDAIGQVKWVPPQ---------------------------------------------------- 572 (794)
Q Consensus 547 QWfi~~~--~~~~~~l~~i~~v~~~P~~---------------------------------------------------- 572 (794)
|||++++ .||+++++++++|+|+|++
T Consensus 535 QWFi~~~~~~~k~~a~~~l~~v~~~P~~~~~~~~~wl~~l~DWciSRQr~wGtpIPWd~~~~ieslsdstiy~a~yti~~ 614 (1084)
T PLN02959 535 QWYLTYGEEEWKKKAEKCLSKMNLYSDETRHGFEHTLGWLNQWACSRSFGLGTRIPWDEQFLIESLSDSTIYMAYYTVAH 614 (1084)
T ss_pred CeeEECCchHHHHHHHHHHcccEEECHHHHHHHHHHHhCCCceeecccccCCCcCCcccceeeccCCCCceeechhhHHH
Confidence 9999997 6999999999999999986
Q ss_pred --------------------------------------------------------------------------------
Q 003799 573 -------------------------------------------------------------------------------- 572 (794)
Q Consensus 573 -------------------------------------------------------------------------------- 572 (794)
T Consensus 615 ~~~~~~~~g~~~~~i~~~~~~~dV~D~wF~Sg~~p~~t~~p~~~l~~~r~ef~~~yP~Dl~~sG~Dii~~wl~~~l~~~~ 694 (1084)
T PLN02959 615 LLQGGDMYGKDKSSIKPEQMTDEVWDFVFCGGPLPKSSDIPAELLEKMKQEFEYWYPFDLRVSGKDLIQNHLTFAIYNHT 694 (1084)
T ss_pred HHhhhhccCCccccCChhhcCccceeEeecCCCcccccCCCHHHHhhhhHHHHhhCCCeEEEecccHHHHHHHHHHHHHH
Confidence
Q ss_pred -------------------------------------CCCCCCCchhhhhhhhc-CCCCceecChHHHHHHHHHHHHHHh
Q 003799 573 -------------------------------------EAPGYGADVLRLWVSSV-DYTGDVMIGPQVLRQMSDIYRKLRG 614 (794)
Q Consensus 573 -------------------------------------~~~~yGaD~lRl~las~-~~~~Di~~s~~~l~~~~~~~~kl~N 614 (794)
++++||||++|||++++ ++.+|++|+++... .++++++|
T Consensus 695 al~~~~P~p~~v~v~G~V~~~G~KMSKSkGNvI~p~diI~kyGADalRl~la~~~~~~~D~nF~~k~~n---~~~~~l~n 771 (1084)
T PLN02959 695 AIWAEEHWPRGFRCNGHLMLNSEKMSKSTGNFLTLRQAIEEFSADATRFALADAGDGVDDANFVFETAN---AAILRLTK 771 (1084)
T ss_pred HhcCCCCCCceEEEccEEecCCcCccccCCCcCCHHHHHHHhCchHHHHHHhhcCCccCCCCccHHHHH---HHHHHHHH
Confidence 33589999999999876 77789999987765 46778888
Q ss_pred HHHHHHhcccCCCCCCCcCCCCCChhhHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhHHH-HHhhcc--cc
Q 003799 615 TLRYLLGNLHDWRVGNSISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFY-FDVAKD--RL 691 (794)
Q Consensus 615 t~rfll~nl~~~~~~~~~~~~~l~~~D~~il~~l~~lv~~v~~~~e~y~f~~ai~~l~~f~~~~lsn~Y-le~~K~--rl 691 (794)
+++|+..++.... ...+...+..+|+|++++++.++++++++|++|+|++|++.. || |+..|+ |+
T Consensus 772 ~~~~~~~~~~~~~--~~~~~~~~~~~D~wils~l~~~i~~v~~a~e~y~f~~A~~~~----------~Yel~~~k~~yr~ 839 (1084)
T PLN02959 772 EIAWMEEVLAAES--SLRTGPPSTYADRVFENEINIAIAETEKNYEAMMFREALKSG----------FYDLQAARDEYRL 839 (1084)
T ss_pred HHHHHHHhhhhhc--ccCCcccCCHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHH----------HHHHHHhHHHHhh
Confidence 8888766543200 001122356789999999999999999999999999999953 45 666777 77
Q ss_pred ccCCCChHhHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhCCCCccccCCCCCCceeecCCCCCCcccCCCChhHHH-
Q 003799 692 YTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAAEFVFESKWPVLDEKWRTFPVGEIY- 770 (794)
Q Consensus 692 y~~~~d~~~r~s~~~vL~~iL~~l~~lLaP~~P~~aEEiw~~L~~~~~~~~~~~~~sV~~~~wP~~~e~~~~~~~~~~~- 770 (794)
|++.. ...+++|+++|+.+++||||||||+|||||++|.+. .+||+.++||+++. .+ ++++.
T Consensus 840 ~~~~~-----~~~~~~L~~vl~~~l~LLaP~~PfiaEEiW~~l~~~--------~~sI~~~~wP~~~~--~d--~~~e~~ 902 (1084)
T PLN02959 840 SCGSG-----GMNRDLVWRFMDVQTRLITPICPHYAEHVWREILKK--------EGFAVTAGWPVAGE--PD--LTLKRA 902 (1084)
T ss_pred ccccc-----hHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhccCC--------CCeEEecCCCCCCc--cC--HHHHHH
Confidence 76532 135778999999999999999999999999999532 25899999999763 23 33332
Q ss_pred ---HHHHHHHHHHHHHHHHhhc
Q 003799 771 ---FWGKILEVIVVVTYLNETE 789 (794)
Q Consensus 771 ---~~~~i~~lR~~v~~~~e~~ 789 (794)
..+.+..+|..++.+.+..
T Consensus 903 ~~~l~~~i~~iR~~~~~~~~~~ 924 (1084)
T PLN02959 903 NKYLQDSIVSFRKLLQKQLAGS 924 (1084)
T ss_pred HHHHHHHHHHHHHhHHHhchhh
Confidence 2455666666666554443
No 19
>KOG0434 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.8e-105 Score=874.65 Aligned_cols=630 Identities=26% Similarity=0.483 Sum_probs=548.2
Q ss_pred CCCcccccHHHHHHHhhcCcchhccc-cCCCCcEEEEcCCCCCCCcccchHHHhHHHHHHHHHHHHhCCCeeEEeccccC
Q 003799 120 RANALVREPEIHKLWDDHQVFLRVAD-KNDGENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDC 198 (794)
Q Consensus 120 r~n~~~~E~~~~~~W~~~~~~~~~~~-~~~~~~f~i~~~pPy~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G~D~ 198 (794)
..|+...|+++.++|.+.+.|+...+ ..++|+|.+.||||+|+|.+|.||++..+++|++.||..|+||.|-..+||||
T Consensus 7 n~nfp~eEEkvle~W~e~~aF~~slk~sk~rp~ftFyDGPPFATGlPHyGHiLa~TIKDiVtRya~~~G~hVeRRFGWD~ 86 (1070)
T KOG0434|consen 7 NFNFPKEEEKVLEFWREIDAFHTSLKLSKGRPKFTFYDGPPFATGLPHYGHILASTIKDIVTRYATQTGHHVERRFGWDT 86 (1070)
T ss_pred cCCCchhHHHHHHHHHHhhHHHHHHHhhCCCCceeeccCCccccCCCccchhhhhhHHHHHHHHhhccccceeeeccccc
Confidence 35666778999999999999998755 35789999999999999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHhhchhhhh---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCCccccCChHHHHHHHHHHHHHH
Q 003799 199 HGLPIELKVLQSLDEDAK---KDLTPSKLRAKAAKFAKATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMS 275 (794)
Q Consensus 199 hGlpie~~~~k~~~~~~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~~~lGi~~dwd~~~~T~d~~~~~~v~~~f~~L~ 275 (794)
||+|+|..++|+++...+ ..++-.+...+||..+.+|..++.+...|||-|+||++-|.||+|.|++.|+|+|++|+
T Consensus 87 HGlPVE~eIDKkLgI~g~~dV~kmGI~kYN~ECR~IVmrYssEWe~tv~RlGRWidF~ndYkTmyp~FMESvWwvFkeL~ 166 (1070)
T KOG0434|consen 87 HGLPVEYEIDKKLGITGRDDVMKMGIDKYNNECRKIVMRYSSEWEKTVERLGRWIDFDNDYKTLYPSFMESVWWVFKELH 166 (1070)
T ss_pred CCCccceeechhcCCCCHHHHHHHhHHhHhHHHHHHHHHHHHHHHHHHHhhccceeccCCcceecHHHHHHHHHHHHHHH
Confidence 999999999999975533 24567788999999999999999999999999999999999999999999999999999
Q ss_pred HcCCeeecccCceeccCCCccccccc--cccCCcccccccceeEEeccCCCCcccccccccCCccceeccCCCCcccccc
Q 003799 276 LQGYIYRGKKPVHWSPSSRTALAEAE--LEYPEGHVSRSIYAVFRMVSAPPSTSGLLNEFLPDLGLAVWTTTPWTVPANA 353 (794)
Q Consensus 276 ~kGlIy~~~~~v~w~~~~~t~Lae~E--vey~e~~~~~~~~v~F~l~~~~~~~~~~l~~~~~~~~l~iwTT~PwTi~~n~ 353 (794)
+||++|||.+.++||..|.|+||+-| ..|++ ..+|+++|.|++.+. ++..+++|||||||||+|.
T Consensus 167 ~kglVYRG~kVMP~STac~TPLSNFEa~QNYKd-V~DPav~v~F~li~~------------~~~slvAWTTTPWTLPSNl 233 (1070)
T KOG0434|consen 167 EKGLVYRGFKVMPYSTACTTPLSNFEAQQNYKD-VPDPAVFVAFPLIGD------------PNVSLVAWTTTPWTLPSNL 233 (1070)
T ss_pred hcCceecceeeeccccccCCcccchhcccCccc-CCCCeEEEEeeccCC------------cceeEEEEecCCccCccce
Confidence 99999999999999999999999665 57865 889999999999764 2468999999999999999
Q ss_pred EEEECCCcceeeeeecccccCCCCCcCCCCCCCCCcccCCcceEeeecccchHHHHHhc-CCceEEEeeeccCcccCCee
Q 003799 354 AVAVNAKLQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFIIVASDLVPTLEAKW-GTKLVIKKTLAGSDLENCRY 432 (794)
Q Consensus 354 av~v~p~~~Y~~v~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~iv~~~~~~~~~~~~-~~~~~~~~~~~G~~L~g~~~ 432 (794)
|+||||+..|+.++-.. .+..+|+.++++..+.+.- ...++|+..++|++|.|++|
T Consensus 234 al~Vnp~~~Yvki~dk~-----------------------~~k~yil~esrl~~l~k~~~~~~~eiler~~G~~L~g~kY 290 (1070)
T KOG0434|consen 234 ALCVNPDFQYVKIKDKT-----------------------TGKKYILMESRLGELYKNPKNDNYEILERFQGAALVGLKY 290 (1070)
T ss_pred eEEEcCCeEEEEEEecc-----------------------CCeEEEEeHHHHHHHhcCcccccHHHHHhcccccccCccc
Confidence 99999999999887542 3678999999998886542 23588999999999999999
Q ss_pred ecCCC------CCcccEEeccCcccccCCCCceeecCCCChhhHHHHHHhCC-----CccccCCCCCccccccCCCCCcc
Q 003799 433 VHPVD------NRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGL-----PILSPVDDEGKFTEEAGKFSGLD 501 (794)
Q Consensus 433 ~~Pl~------~~~~pvvi~~~~V~~~~GTG~Vh~aPaHg~~D~~~~~~~gl-----~i~~~vd~~G~~~~~~~~~~G~~ 501 (794)
..++. ++....++.++||+.+.|||+||+||+.|.+||.+|.++|+ -++||||++|+||.+...|.|.+
T Consensus 291 eplF~YF~~~~~~~aFrvl~d~yVt~~sGTGiVH~AP~FGe~Dy~~c~~~giI~~d~~~~cpVDe~G~~Tsev~dfaG~Y 370 (1070)
T KOG0434|consen 291 EPLFPYFAETFEEGAFRVLSDDYVTEDSGTGIVHQAPAFGEEDYRACVANGIIRKDSLPPCPVDESGLFTSEVTDFAGQY 370 (1070)
T ss_pred CccchHHHHHhccCceEEeccCcEecCCCceeeecCCccChhhHHHHHHcCcccCCCCCCCccccCCcccccccccccee
Confidence 96663 33445558899999999999999999999999999999987 46899999999999999999999
Q ss_pred ccccchHHHHHHHHhcCCcccccccccccccccCCCCcEEEcccCccccchhhHHHHHHhhhcCeeecCCC---------
Q 003799 502 VLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTKKPTIFRATEQWFASVEGFRQAAMDAIGQVKWVPPQ--------- 572 (794)
Q Consensus 502 v~~ea~~~ii~~L~~~g~l~~~~~~~h~yp~~WRt~~pii~r~t~QWfi~~~~~~~~~l~~i~~v~~~P~~--------- 572 (794)
| +||++.||+.|++.|.|++...+.|+||+|||+++|+|||+.|.||++++.+.+++++++....|+|..
T Consensus 371 V-KDaDK~Ii~~lk~~g~lv~~~~i~HsYPFCWRSDTPLiYraVPsWFVrVk~~v~~ll~nn~~t~WVP~~ikeKRF~NW 449 (1070)
T KOG0434|consen 371 V-KDADKLIIRSLKASGRLVKASQITHSYPFCWRSDTPLIYRAVPSWFVRVKNIVDQLLRNNMKTHWVPQNIKEKRFANW 449 (1070)
T ss_pred e-ccchHHHHHHHHhcCceeeeeeeeeccCceecCCChHHHhhccHhhhhHHHHHHHHHhcccccccCChhhhHHHHHHH
Confidence 9 599999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred --------------------------------------------------------------------------------
Q 003799 573 -------------------------------------------------------------------------------- 572 (794)
Q Consensus 573 -------------------------------------------------------------------------------- 572 (794)
T Consensus 450 L~nARDW~iSRnR~WGTPIpLWVSdD~eevVcigSi~eLEeLSG~kItDlHRe~iD~itIps~~gkg~l~Rv~eVfDCWF 529 (1070)
T KOG0434|consen 450 LKNARDWNISRNRYWGTPIPLWVSDDYEEVVCIGSIKELEELSGVKITDLHRESIDHITIPSKKGKGVLHRVSEVFDCWF 529 (1070)
T ss_pred HhhhhhcccccccccCCCcceEEccCCceEEEeccHHHHHHhcCCcchhhhhhhcCceecccCCCCcceehhhhHhhhhh
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 003799 573 -------------------------------------------------------------------------------- 572 (794)
Q Consensus 573 -------------------------------------------------------------------------------- 572 (794)
T Consensus 530 ESGSMPYAq~HyPFenk~~fe~~fPadFIaEGlDQTRGWFYTL~VlsT~LF~kppfkNvIvnGlVLAeDG~KMSKrlkNY 609 (1070)
T KOG0434|consen 530 ESGSMPYAQRHYPFENKEEFEENFPADFIAEGLDQTRGWFYTLLVLSTALFGKPPFKNVIVNGLVLAEDGKKMSKRLKNY 609 (1070)
T ss_pred ccCCCcchhhcCCccchHHHhhcCchHhhhhccccccchhhHHHHHHHHHcCCCcchheeEeeeEEecccHHHhhhhhcC
Confidence
Q ss_pred -----CCCCCCCchhhhhhhhcCC--CCceecChHHHHHH-HHHHHHHHhHHHHHHhcccC--------CCCCCCcCCCC
Q 003799 573 -----EAPGYGADVLRLWVSSVDY--TGDVMIGPQVLRQM-SDIYRKLRGTLRYLLGNLHD--------WRVGNSISYDD 636 (794)
Q Consensus 573 -----~~~~yGaD~lRl~las~~~--~~Di~~s~~~l~~~-~~~~~kl~Nt~rfll~nl~~--------~~~~~~~~~~~ 636 (794)
++++||||+||+|+.++.. ...+.|.++.++.+ .+.+.-.||.+||+.+|... |.+++.++ +
T Consensus 610 PdP~~iinkYGADalRlYLInSPVvraE~LkFkeeGVrevvk~v~lPW~NsyrF~~qn~~~~~~~~g~~f~~~~~~~--S 687 (1070)
T KOG0434|consen 610 PDPSLIINKYGADALRLYLINSPVVRAENLKFKEEGVREVVKDVLLPWYNSYRFLVQNAALLKKETGKDFVFDDSVT--S 687 (1070)
T ss_pred CCHHHHHHhhcchheeeeeecCccccccccccchhhHHHHHHhhhhhhhHHHHHHHHHHHHhccccCCccccccccc--c
Confidence 4569999999999988755 35899999988765 56777899999999988653 33333332 4
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhHHHHHhhccccccCCCChHhHHHHHHHHHHHHHHHH
Q 003799 637 LPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRLYTGGTTSFTRRSCQTVLSAHLLSIV 716 (794)
Q Consensus 637 l~~~D~~il~~l~~lv~~v~~~~e~y~f~~ai~~l~~f~~~~lsn~Yle~~K~rly~~~~d~~~r~s~~~vL~~iL~~l~ 716 (794)
.+.+|+||++..+.++.-+++.|++|+++.++-.+..|+ ++|+|||++..+.|+..+... ...-.+..+|.++|..++
T Consensus 688 ~NvmDrWI~a~~qslv~fv~~eM~~YrLytVvp~llkfi-D~LTNwYiR~nRrrlkGe~G~-~d~~~AL~~Lf~vL~t~~ 765 (1070)
T KOG0434|consen 688 SNVMDRWILASTQSLVGFVREEMDQYRLYTVVPRLLKFI-DELTNWYIRFNRRRLKGENGE-HDCHNALNVLFEVLFTLV 765 (1070)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHheehhhhHHHHHHHH-HHhhhhheehhhhhhcCCCch-HHHHHHHHHHHHHHHHHH
Confidence 567999999999999999999999999999999999998 679999999999998654332 233456678999999999
Q ss_pred HHhccccchHHHHHHHhCCCCc-cccCCCCCCceeecCCCCCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhcCCC
Q 003799 717 RVIAPILPHLAEDVWQNLPFAY-TLEDGSAAEFVFESKWPVLDEKWRTFPVGEIYFWGKILEVIVVVTYLNETEGFS 792 (794)
Q Consensus 717 ~lLaP~~P~~aEEiw~~L~~~~-~~~~~~~~~sV~~~~wP~~~e~~~~~~~~~~~~~~~i~~lR~~v~~~~e~~~~~ 792 (794)
++|+||+||++|.+||+|.... .-.++....|||..++|.++++..+ +.++..++...++.+.++...|.-+++
T Consensus 766 r~MaPfTPF~tE~iyq~Lk~~~~~~~~~~~~~SVHfl~~P~~~~~~~d--e~ve~~v~~m~siIdl~R~iRern~is 840 (1070)
T KOG0434|consen 766 RVMAPFTPFFTEYIYQNLKKYIPIDKNEKSERSVHFLSYPTPKEELID--ETVERRVERMQSIIDLARNIRERNTIS 840 (1070)
T ss_pred HHHcCCchHHHHHHHHHHHhcCCccccCCccceeEEeecCCchhhhcc--chHHHHHHHHHHHHHHHHHHhhccCCc
Confidence 9999999999999999995321 1122333579999999999998777 666666777777777666666665543
No 20
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=100.00 E-value=1.4e-103 Score=959.48 Aligned_cols=585 Identities=19% Similarity=0.313 Sum_probs=503.9
Q ss_pred cccHHHHHHHhhcCcchhccccCCCCcEEEEcCCCCCCCcccchHHHhHHHHHHHHHHHHhCCCeeEEeccccCCCchHH
Q 003799 125 VREPEIHKLWDDHQVFLRVADKNDGENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIE 204 (794)
Q Consensus 125 ~~E~~~~~~W~~~~~~~~~~~~~~~~~f~i~~~pPy~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G~D~hGlpie 204 (794)
.+|++||++|+++++|++..+ ++++|++++||||+||.|||||++|++++|+++||+||+||+|+|++||||||+||+
T Consensus 2 ~iE~k~~~~W~~~~~fe~~~~--~~~kf~i~~ppPy~nG~lH~GH~~~~~~~D~~aRy~Rm~G~~vl~p~G~d~~G~pi~ 79 (938)
T TIGR00395 2 AIEKKWQKRWEEAHIFEADPD--DREKFFLTMAYPYLNGVMHAGHCRTFTIPEVSARFERMKGKNVLFPLGFHVTGTPIL 79 (938)
T ss_pred hHHHHHHHHHHhCCCcccCCC--CCCceEEecCCCCCCCCcccchhhhhhHHHHHHHHHHhcCCccCCCCccCCCCCchH
Confidence 479999999999999998643 578999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhchhh--------hhcCCCHHHHHHHH--HHHHHHHHHHHHHHHHHcCCccCCCCccccCChHHHHHHHHHHHHH
Q 003799 205 LKVLQSLDED--------AKKDLTPSKLRAKA--AKFAKATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQM 274 (794)
Q Consensus 205 ~~~~k~~~~~--------~~~~~~~~~~~~~~--~~~a~~~~~~~~~~~~~lGi~~dwd~~~~T~d~~~~~~v~~~f~~L 274 (794)
..++|..... ...++++++|.+.| ++|++++...++++|++||+++||++.|.|+||.|.++++|+|.+|
T Consensus 80 ~~aek~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~lG~s~DW~r~~~T~dp~y~~~v~~~f~~L 159 (938)
T TIGR00395 80 GLAELIKRRDELTIKNYTEVHAIPREELLKFTDPEYIVEYFSREAESACKSMGYSIDWRRSFKTTDPYYDRFIEWQMNKL 159 (938)
T ss_pred HHHHHhhhhhhhccccchhhccCCHHHHHhhcCHHHHHHHHHHHHHHHHHHhCceEECCCCccCCChhHHHHHHHHHHHH
Confidence 9888743221 23567899999998 8999999999999999999999999999999999999999999999
Q ss_pred HHcCCeeecccCceeccCCCccccccccccCCcc-cccccceeEEeccCCCCcccccccccCCccceeccCCCCcccccc
Q 003799 275 SLQGYIYRGKKPVHWSPSSRTALAEAELEYPEGH-VSRSIYAVFRMVSAPPSTSGLLNEFLPDLGLAVWTTTPWTVPANA 353 (794)
Q Consensus 275 ~~kGlIy~~~~~v~w~~~~~t~Lae~Evey~e~~-~~~~~~v~F~l~~~~~~~~~~l~~~~~~~~l~iwTT~PwTi~~n~ 353 (794)
+++|+||+|.++|+|||.|+|+|||+|+++.++. ....++++|++.+. +.++++||||||||+|++
T Consensus 160 ~e~G~iy~g~~~v~wcp~~~t~lsd~e~~~~e~~~~~~~~~ikf~~~~~-------------~~~l~~aTtRPETl~g~t 226 (938)
T TIGR00395 160 KELGLIVKGEHPVRYCPKDGNPVEDHDLLSGEGVTIVEYILIKFELEDG-------------AFYFVAATLRPETVYGVT 226 (938)
T ss_pred HHCCCEecCCeeEeecCCCCCCCchhHhccCCccccceEEEEEEEcCCC-------------ceEEEEeeCCcchhhcce
Confidence 9999999999999999999999999999986543 24568889988531 247999999999999999
Q ss_pred EEEECCCcceeeeeecccccCCCCCcCCCCCCCCCcccCCcceEeeecccchHHHHHhcCCceEEEeeeccCcccCCeee
Q 003799 354 AVAVNAKLQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFIIVASDLVPTLEAKWGTKLVIKKTLAGSDLENCRYV 433 (794)
Q Consensus 354 av~v~p~~~Y~~v~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~G~~L~g~~~~ 433 (794)
||||||+++|++++++ ++.+|+++++++++..+ +..++++++++|++|+|+++.
T Consensus 227 av~V~P~~~Y~~~~~~-------------------------~e~~i~s~~~~~~~~~q-~~~~~~~~~~~g~~l~G~~~~ 280 (938)
T TIGR00395 227 NCWVNPTITYVIAEVG-------------------------GEKWITSKEAFENLSYQ-KLKYKPIEEVPGKQFIGKKVH 280 (938)
T ss_pred eEEECCCCcEEEEEeC-------------------------CcEEEEeHHHHHhhhhc-ccceeEEEEEchHhccCCEEE
Confidence 9999999999999864 47899999999998765 556889999999999999999
Q ss_pred cCCCCCcccEEeccCcccccCCCCceeecCCCChhhHHHHHHh-------C-------CCccccC--CC-----------
Q 003799 434 HPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKY-------G-------LPILSPV--DD----------- 486 (794)
Q Consensus 434 ~Pl~~~~~pvvi~~~~V~~~~GTG~Vh~aPaHg~~D~~~~~~~-------g-------l~i~~~v--d~----------- 486 (794)
||++++++|| ++++||++++|||+||++||||++||.+++++ | ++++.++ ++
T Consensus 281 ~P~~~~~ipi-l~~~~V~~~~GTGvV~~~Pah~p~Dy~~~~~l~~~~~~~gi~~~~~~~~~i~ii~~~~~g~~~a~~~~~ 359 (938)
T TIGR00395 281 NPVVGPEVPI-LPAEFVDTTKGTGVVMSVPAHAPDDYIALEDLLHDPEYLGIKPVVIDIEPVPLIHTDGYGDLPAKEIVE 359 (938)
T ss_pred CCCCCCeeEE-eecceeecCCCcceEEeCCCCCHHHHHHHHHhhhcchhcCCcchhcccCCccceecCCCCcccHHHHHH
Confidence 9999999999 78999999999999999999999999998863 3 3444433 33
Q ss_pred --------------------------CCccccccCCCCCccccccchHHHHHHHHhcCCcccccccccccccccCCCCcE
Q 003799 487 --------------------------EGKFTEEAGKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTKKPT 540 (794)
Q Consensus 487 --------------------------~G~~~~~~~~~~G~~v~~ea~~~ii~~L~~~g~l~~~~~~~h~yp~~WRt~~pi 540 (794)
+|.++.++++|.|+.|. +|+++|++.|++.|.+++...+. .+|+||||++||
T Consensus 360 ~~~i~~~~d~~~l~~a~~~~y~~~f~~G~m~~~~~~~~G~~v~-ear~~i~~~L~~~g~~~~~~~~~-~~~v~~R~g~~~ 437 (938)
T TIGR00395 360 EKGIKSQKDKNLLEEATKILYKEEYHTGVMIYNIPPYKGMKVS-EAKEKVKADLIDAGLADVMYEFS-ESPVICRCGTDC 437 (938)
T ss_pred HhcCCCchhhhHHHHHHHHHhhhhccCceeccCCcccCCcCHH-HhHHHHHHHHHHCCCceEeeecC-CCCcEecCCCeE
Confidence 35556666789999995 99999999999999999876553 468899999999
Q ss_pred EEc-ccCccccchh--hHHHHHHhhhcCeeecCCC---------------------------------------------
Q 003799 541 IFR-ATEQWFASVE--GFRQAAMDAIGQVKWVPPQ--------------------------------------------- 572 (794)
Q Consensus 541 i~r-~t~QWfi~~~--~~~~~~l~~i~~v~~~P~~--------------------------------------------- 572 (794)
+++ +++|||+++. .+++++++.+++++|+|+.
T Consensus 438 vv~~~~~QWFi~~~~~~~k~~~~~~l~~~~~~P~~~~~~~~~~l~~l~DW~ISRqr~WGtpIP~d~~~~ieslsdstiY~ 517 (938)
T TIGR00395 438 IVKVVEDQWFVKYSDESWKELAHECLEGMRIIPEEVKNAFEGKIDWLKDWACCRRYGLGTRLPWDEKWLIESLSDSTIYM 517 (938)
T ss_pred EEeccCCCCeEEcCcHHHHHHHHHHHhcCEEeCHHHHHHHHHHHhhhhhcccccccccCcccceeecEEeeecchhhhhh
Confidence 998 9999999998 5898888888877777764
Q ss_pred --------------------------------------------------------------------------------
Q 003799 573 -------------------------------------------------------------------------------- 572 (794)
Q Consensus 573 -------------------------------------------------------------------------------- 572 (794)
T Consensus 518 ~~~~i~~~l~~~~~~~~~l~~ev~D~~~~~~~~~~~t~~~~~~~~~~~~ef~~~yP~D~~~~GkDii~~H~~~~i~~~~a 597 (938)
T TIGR00395 518 AYYTIAHYLNKDYYGNEQMTDEFFDYIFLGKGDVKNTNIPLPAIQKLRREFEYWYPLDWRISGKDLIPNHLTFYIFHHVA 597 (938)
T ss_pred hhccHHHHhhccCCChHHCCcccCceEEECCCChhhcCCCHHHHHHHHHHHhhcCCceEEEEeeccccchHHHHHHHHHH
Confidence
Q ss_pred ------------------------------------CCCCCCCchhhhhhhhc-CCCCceecChHHHHHHHHHHHHHHhH
Q 003799 573 ------------------------------------EAPGYGADVLRLWVSSV-DYTGDVMIGPQVLRQMSDIYRKLRGT 615 (794)
Q Consensus 573 ------------------------------------~~~~yGaD~lRl~las~-~~~~Di~~s~~~l~~~~~~~~kl~Nt 615 (794)
++++||+|++|||++++ ++++|++|+++.+..+.+.+.+++|+
T Consensus 598 ~~~~~~~Pk~i~~~G~vl~~G~KMSKSlGNvI~p~d~i~~yGaDalRl~Ll~~~~~~~D~~fs~~~~~~~~~~l~~l~n~ 677 (938)
T TIGR00395 598 IFPEKFWPRGIVVNGYVMLEGKKMSKSKGNVLTLEQAVEKFGADVARLYIADAAETVQDADWKESEVEGTILRLERLYEF 677 (938)
T ss_pred cCCccccCcEEEEeceEEeCCccccCcCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHHHHHH
Confidence 33589999999999976 88999999999999999999999999
Q ss_pred HHHHHhcccCCCCCCCcCCCCCChhhHHHHHHHHHHHHHHHHHHhcccHHHHH-HHHHHHHHHhhhHHHHHhhccccccC
Q 003799 616 LRYLLGNLHDWRVGNSISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIF-QIIQRFIIVDLSNFYFDVAKDRLYTG 694 (794)
Q Consensus 616 ~rfll~nl~~~~~~~~~~~~~l~~~D~~il~~l~~lv~~v~~~~e~y~f~~ai-~~l~~f~~~~lsn~Yle~~K~rly~~ 694 (794)
++++++... +. . ...+...|+|+++++++++++++++|++|+|++|+ ..+++|++. +|+|++..+++
T Consensus 678 ~~~~~~~~~---~~--~-~~~~~~~D~wlls~l~~~i~~v~~a~e~~~~~~Al~~~l~~~~~~--~n~Yl~~~~~~---- 745 (938)
T TIGR00395 678 AEEITKESN---LE--T-GEETSFIDRWLESRMNAAIKETYEAMENFQTRKAVKYALFDLQAD--VDWYRRRGGVN---- 745 (938)
T ss_pred HHHHHhhcc---cC--C-CccCChHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH--HHHHHHhCcch----
Confidence 988765432 11 0 11346789999999999999999999999999999 678899864 89998864322
Q ss_pred CCChHhHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhCCCCccccCCCCCCceeecCCCCCCcccCCCChhHHHHHHH
Q 003799 695 GTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAAEFVFESKWPVLDEKWRTFPVGEIYFWGK 774 (794)
Q Consensus 695 ~~d~~~r~s~~~vL~~iL~~l~~lLaP~~P~~aEEiw~~L~~~~~~~~~~~~~sV~~~~wP~~~e~~~~~~~~~~~~~~~ 774 (794)
...+|+++++.+++||+|||||+|||||++|+. .+||+.++||++++.+.+ ++++...+.
T Consensus 746 ---------~~~~l~~~l~~~~~LLaP~~P~~aEeiw~~Lg~---------~~sv~~~~wP~~~~~~~d--~~~~~~~~~ 805 (938)
T TIGR00395 746 ---------HKDVLARYLETWIKLLAPFAPHFAEEMWEEVGN---------EGFVSLAKFPEASEPAVD--KEVEAAEEY 805 (938)
T ss_pred ---------HHHHHHHHHHHHHHHhcCcccHHHHHHHHHcCC---------CCeEEecCCCCCCcccCC--HHHHHHHHH
Confidence 234799999999999999999999999999974 269999999999987665 666666677
Q ss_pred HHHHHHHHHHH
Q 003799 775 ILEVIVVVTYL 785 (794)
Q Consensus 775 i~~lR~~v~~~ 785 (794)
++++-..++..
T Consensus 806 ~~~~i~~iR~~ 816 (938)
T TIGR00395 806 LRNLVRDIQEI 816 (938)
T ss_pred HHHHHHHHHHh
Confidence 66666666554
No 21
>KOG0432 consensus Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.8e-100 Score=862.07 Aligned_cols=593 Identities=25% Similarity=0.415 Sum_probs=525.5
Q ss_pred cccCCCccCCCCCCcccccHHHHHHHhhcCcchhccccCCCCcEEEEcCCCCCCCcccchHHHhHHHHHHHHHHHHhCCC
Q 003799 109 TVDLPKTTFGMRANALVREPEIHKLWDDHQVFLRVADKNDGENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNY 188 (794)
Q Consensus 109 t~~lp~t~f~~r~n~~~~E~~~~~~W~~~~~~~~~~~~~~~~~f~i~~~pPy~nG~lHiGHa~~~il~Dii~R~~r~~G~ 188 (794)
+..+|... ++..+|..|+.||+++++|++....+.++.|++..||||++|.||||||++.++.|+++||+||.||
T Consensus 39 ~~~~~~~y-----~p~~vE~~wy~ww~k~g~fkp~~~~~~~~~f~i~~PPPNVTG~LHiGHALt~aiqD~i~R~~rm~G~ 113 (995)
T KOG0432|consen 39 SGPLPAAY-----SPAYVESAWYKWWEKQGFFKPEYGPNPGGVFVIPLPPPNVTGSLHIGHALTVAIQDALARYNRMHGY 113 (995)
T ss_pred CCcccccC-----CccchHHHHHHHHHHcCCCCcccCCCCCCcceeecCCCCcccccchhHHHHHHHHHHHHHHHHhcCC
Confidence 33455554 4488999999999999999987655678999999999999999999999999999999999999999
Q ss_pred eeEEeccccCCCchHHHHHHhhchh---hhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCCccccCChHHHH
Q 003799 189 KVRYVPGWDCHGLPIELKVLQSLDE---DAKKDLTPSKLRAKAAKFAKATVKAQMASFKRYGVWADWNNPYLTLDPEYEA 265 (794)
Q Consensus 189 ~V~~~~G~D~hGlpie~~~~k~~~~---~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~lGi~~dwd~~~~T~d~~~~~ 265 (794)
+|+|+||+||+|+.++..++|.+.. ..+.++++++|.+++++|-+++...+.+|+++||.+.||++.++|||+...+
T Consensus 114 ~vlw~PG~DHAGIATQ~VVEK~l~~~~~~~Rh~lgRe~F~~~vw~Wk~e~g~~I~~Qlk~lGas~DW~re~fTmD~~~s~ 193 (995)
T KOG0432|consen 114 QVLWVPGTDHAGIATQVVVEKQLAREGGKTRHDLGREEFLKEVWEWKEEYGGRIYNQLKRLGASLDWDREAFTMDPKLSR 193 (995)
T ss_pred eeeecCCccccchhHHHHHHHHHHHhcCcchhhcCHHHHHHHHHHHHHHhCccHHHHHHHhcCcccccHhhcccCHHHHH
Confidence 9999999999999999999998853 3567899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCeeecccCceeccCCCccccccccccCCcccccccce-----------------eEEeccCCCCccc
Q 003799 266 AQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAEAELEYPEGHVSRSIYA-----------------VFRMVSAPPSTSG 328 (794)
Q Consensus 266 ~v~~~f~~L~~kGlIy~~~~~v~w~~~~~t~Lae~Evey~e~~~~~~~~v-----------------~F~l~~~~~~~~~ 328 (794)
+|.+.|.+|+++|+|||+.+.|+||+..+|++||.||++.+ ..++ .++ +|++..
T Consensus 194 AV~eAFvrL~eeglIyR~~rlVNW~~~L~saiSdiEVe~~e-i~~~-t~l~vpGyd~~VeFG~L~~faY~v~g------- 264 (995)
T KOG0432|consen 194 AVTEAFVRLHEEGLIYRANRLVNWCPALRSAISDIEVESVE-IPGR-TLLSVPGYDTKVEFGVLYSFAYPVEG------- 264 (995)
T ss_pred HHHHHHHHHHhcCceEecCceeeechhHHhhhhhheeccee-cCCC-ceEecCCCCcceeeeeeeEEEEeccC-------
Confidence 99999999999999999999999999999999999999865 2221 111 222221
Q ss_pred ccccccCCccceeccCCCCccccccEEEECCCc-ceeeeeecccccCCCCCcCCCCCCCCCcccCCcceEeeecccchHH
Q 003799 329 LLNEFLPDLGLAVWTTTPWTVPANAAVAVNAKL-QYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFIIVASDLVPT 407 (794)
Q Consensus 329 ~l~~~~~~~~l~iwTT~PwTi~~n~av~v~p~~-~Y~~v~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~iv~~~~~~~ 407 (794)
.+..++|+||||+||+|++||||||++ +|.
T Consensus 265 ------s~~~i~VaTTRpET~lGDvAvAVhP~D~RYk------------------------------------------- 295 (995)
T KOG0432|consen 265 ------SDEEIVVATTRPETILGDVAVAVHPDDDRYK------------------------------------------- 295 (995)
T ss_pred ------CCCeEEEecCCccccccceeEEeCCCCcccc-------------------------------------------
Confidence 234899999999999999999999987 562
Q ss_pred HHHhcCCceEEEeeeccCcccCCeeecCCCCCcccEEeccCcccccCCCCceeecCCCChhhHHHHHHhCCCccccCCCC
Q 003799 408 LEAKWGTKLVIKKTLAGSDLENCRYVHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPILSPVDDE 487 (794)
Q Consensus 408 ~~~~~~~~~~~~~~~~G~~L~g~~~~~Pl~~~~~pvvi~~~~V~~~~GTG~Vh~aPaHg~~D~~~~~~~gl~i~~~vd~~ 487 (794)
.|.|+.++||+.++.+|| |.+.+|++++|||+|+++|||++.||+++++|||+.+++++++
T Consensus 296 ------------------~lhGk~~~hP~~~r~lPi-I~D~~Vd~~fGTGaVKITPaHd~nDyEvgkRh~L~~~ni~~~d 356 (995)
T KOG0432|consen 296 ------------------HLHGKFVKHPFTGRKLPI-ICDIAVDMEFGTGAVKITPAHDPNDYEVGKRHNLEFINIFTDD 356 (995)
T ss_pred ------------------cccCceeecCCCCCccce-eecccccccccccceEecCCCChhHHHHHHhcCCCceeEEcCC
Confidence 356889999999999999 6789999999999999999999999999999999999999999
Q ss_pred CccccccCCCCCccccccchHHHHHHHHhcCCcccccccccccccccCCCCcEEEcccCccccchhhHHHHHHhhhc--C
Q 003799 488 GKFTEEAGKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTKKPTIFRATEQWFASVEGFRQAAMDAIG--Q 565 (794)
Q Consensus 488 G~~~~~~~~~~G~~v~~ea~~~ii~~L~~~g~l~~~~~~~h~yp~~WRt~~pii~r~t~QWfi~~~~~~~~~l~~i~--~ 565 (794)
|.+++.+|+|.||++| +|+++|++.|++.|+....++.....|.|.|||.-|.+.+.+|||++++.|.++++++++ .
T Consensus 357 G~l~~~~gef~Gm~RF-eAR~kvv~~L~e~gL~~g~~~h~mvlpiCSRsgDVIEpllkpQW~v~c~ema~~A~~av~sG~ 435 (995)
T KOG0432|consen 357 GLLNNVCGEFKGMKRF-EAREKVVEKLKELGLYVGKENHPMVLPICSRSGDVIEPLLKPQWFVSCKEMAKKALKAVESGK 435 (995)
T ss_pred CceeccchhccCcHHH-HHHHHHHHHHHHhhhhhccCCCceeccccCCCCCcccccccchheeehHHHHHHHHHHHhcCC
Confidence 9999999999999998 999999999999999999999999999999999999999999999999999999999998 6
Q ss_pred eeecCCC-------------------------------------------------------------------------
Q 003799 566 VKWVPPQ------------------------------------------------------------------------- 572 (794)
Q Consensus 566 v~~~P~~------------------------------------------------------------------------- 572 (794)
++++|+.
T Consensus 436 L~i~P~~~~k~w~~W~~~i~DWCiSRQLWWGHrIPAy~v~~~~~~~ee~~WvvarseeeA~ekaa~k~g~~~~~~L~qDp 515 (995)
T KOG0432|consen 436 LEILPEFHEKEWYRWLENIRDWCISRQLWWGHRIPAYFVNLSDGRAEEDYWVVARSEEEAREKAAEKFGPGKEFTLEQDP 515 (995)
T ss_pred eEECchHHHHHHHHHHhhccccchhhhhhhccccceeeeecccCCCccceeEEeCCHHHHHHHHHHHhCCcccceeecCc
Confidence 8899985
Q ss_pred --------------------------------------------------------------------------------
Q 003799 573 -------------------------------------------------------------------------------- 572 (794)
Q Consensus 573 -------------------------------------------------------------------------------- 572 (794)
T Consensus 516 DVLDTWFSS~L~PfS~lGWP~~t~d~~~fyP~sllETG~DILfFWVaRMvmLg~kLtG~lPF~~V~LH~mVRDa~GRKMS 595 (995)
T KOG0432|consen 516 DVLDTWFSSGLWPFSTLGWPEETKDFKNFYPLSLLETGHDILFFWVARMVMLGLKLTGELPFKEVLLHGLVRDAHGRKMS 595 (995)
T ss_pred cHHHhhhhcccccchhcCCccccccHHhcCCchhhhcCchHHHHHHHHHHHhhhhhcCCCCchheeechhhccccccccc
Confidence
Q ss_pred ------------------------------------------------CCCCCCCchhhhhhhhcCC-CCceecChHHHH
Q 003799 573 ------------------------------------------------EAPGYGADVLRLWVSSVDY-TGDVMIGPQVLR 603 (794)
Q Consensus 573 ------------------------------------------------~~~~yGaD~lRl~las~~~-~~Di~~s~~~l~ 603 (794)
.+|+.|.|+|||.+++..- +.|++++-..+.
T Consensus 596 KSLGNVIDPlDVI~Gisle~L~~~L~~gNLdp~Ev~~a~~gq~kdFPnGIpeCGtDALRFaL~s~~~~~~dInLDv~rv~ 675 (995)
T KOG0432|consen 596 KSLGNVIDPLDVIDGISLEKLHAKLLSGNLDPREVEKAKKGQKKDFPNGIPECGTDALRFALCSYTTQGRDINLDVLRVE 675 (995)
T ss_pred hhhccccCHHHHhccccHHHHHHHHHcCCCCHHHHHHHHHHHHhhcCCCCcccchHHHHHHHHHccccCccccccHHHHh
Confidence 5678899999999987644 569999999999
Q ss_pred HHHHHHHHHHhHHHHHHhcccC-CCCCCCcCCCCCC-hhhHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhH
Q 003799 604 QMSDIYRKLRGTLRYLLGNLHD-WRVGNSISYDDLP-MIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSN 681 (794)
Q Consensus 604 ~~~~~~~kl~Nt~rfll~nl~~-~~~~~~~~~~~l~-~~D~~il~~l~~lv~~v~~~~e~y~f~~ai~~l~~f~~~~lsn 681 (794)
..+.++|||||+.||+++.+.+ |.|.......... .+|+||+++|+.+++.+.++|+.|+|+.|.++++.|...+||+
T Consensus 676 g~r~FcNKlWNa~rF~l~~lg~~~~p~~~~~~~~~~~~~d~WIlsrL~~av~~~~~~~~~~~f~~at~a~~~Fwl~~lCD 755 (995)
T KOG0432|consen 676 GYRHFCNKLWNATRFALQRLGENFVPSPTEDLSGNESLVDEWILSRLAEAVEEVNESLEARNFHLATSALYAFWLYDLCD 755 (995)
T ss_pred hHHHHHHHHHHHHHHHHHhcccCCCCCcccccCCCcchhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999987654 6665322222112 2999999999999999999999999999999999999999999
Q ss_pred HHHHhhccccccCCCChHhHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhCCCCccccCCCCCCceeecCCCCCCccc
Q 003799 682 FYFDVAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAAEFVFESKWPVLDEKW 761 (794)
Q Consensus 682 ~Yle~~K~rly~~~~d~~~r~s~~~vL~~iL~~l~~lLaP~~P~~aEEiw~~L~~~~~~~~~~~~~sV~~~~wP~~~e~~ 761 (794)
.|+|.+|+-++.+. ...+..+..||+.+|+..++||+|||||+|||+||+|+.. .+....|+..++||...+.|
T Consensus 756 VYlE~~Kp~l~~~~--~~~~~~a~~vL~~~ld~gLrll~PfMPFvtEel~qrlP~r----~~~~~~si~va~yP~~~~~~ 829 (995)
T KOG0432|consen 756 VYLEATKPLLWGDS--EALAYEARRVLYRCLDNGLRLLHPFMPFITEELWQRLPRR----KGSKPASISVSPYPSSNELW 829 (995)
T ss_pred HHHHHhhHHhcCCc--HHHHHHHHHHHHHHHHHHHHHhcCcccccHHHHHHhcccC----CCCCCCceEecCCCchhccc
Confidence 99999999987654 3446677889999999999999999999999999999864 23334699999999878888
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHhhcCCC
Q 003799 762 RTFPVGEIYFWGKILEVIVVVTYLNETEGFS 792 (794)
Q Consensus 762 ~~~~~~~~~~~~~i~~lR~~v~~~~e~~~~~ 792 (794)
.+ ++++..++.+.++-..++.+....+++
T Consensus 830 ~~--~e~E~~~~~v~~i~~~iRslra~y~l~ 858 (995)
T KOG0432|consen 830 RN--EELESAFELVLAITRAIRSLRAEYNLS 858 (995)
T ss_pred CC--HHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 88 778888888887777777777666554
No 22
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=9.1e-100 Score=922.45 Aligned_cols=549 Identities=23% Similarity=0.363 Sum_probs=480.6
Q ss_pred ccchHHHhHHHHHHHHHHHHhCCCeeEEeccccCCCchHHHHHHhhchhh--------hhcCCCHHHHHHH--HHHHHHH
Q 003799 165 LHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDED--------AKKDLTPSKLRAK--AAKFAKA 234 (794)
Q Consensus 165 lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G~D~hGlpie~~~~k~~~~~--------~~~~~~~~~~~~~--~~~~a~~ 234 (794)
|||||++|++++|+++||+||+||+|+|++||||||+|||..+++..... +..+++..++.+. |++|+++
T Consensus 1 lHiGH~~~~t~~D~i~Ry~rm~G~~Vl~~~G~d~~GlPie~~ae~~~~~~~~~~~~~~~~~gi~~~~i~~f~~~~~~~~~ 80 (897)
T PRK12300 1 LHVGHGRTYTIGDVIARYKRMRGYNVLFPMAFHVTGTPILGIAERIARGDPETIELYKSLYGIPEEELEKFKDPEYIVEY 80 (897)
T ss_pred CccchhHHHHHHHHHHHHHHcCCCcCCCCCCCCCCCcCHHHHHHHhhccchhHHHHHHHHcCCCHHHHHHhcCHHHHHHH
Confidence 79999999999999999999999999999999999999999987632111 1125666666554 5999999
Q ss_pred HHHHHHHHHHHcCCccCCCCccccCChHHHHHHHHHHHHHHHcCCeeecccCceeccCCCccccccccccCCccccccc-
Q 003799 235 TVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAEAELEYPEGHVSRSI- 313 (794)
Q Consensus 235 ~~~~~~~~~~~lGi~~dwd~~~~T~d~~~~~~v~~~f~~L~~kGlIy~~~~~v~w~~~~~t~Lae~Evey~e~~~~~~~- 313 (794)
+.+.++++|++||+|+||+++|.|+||.|+++++|+|.+|+++|+||+|.++|+|||.|+|+|||+|++++++ .+++.
T Consensus 81 ~~~~~~~~~~~lG~~~DW~r~y~T~dp~y~~~v~w~F~~L~ekGliyrg~~~v~wcp~~~t~lad~e~~~~e~-~~~~~~ 159 (897)
T PRK12300 81 FSEEAKEDMKRIGYSIDWRREFTTTDPEYSKFIEWQFRKLKEKGLIVKGSHPVRYCPNDNNPVGDHDLLDGEE-PEIVEY 159 (897)
T ss_pred hHHHHHHHHHHhCcEEeCCCCeECCChhHHHHHHHHHHHHHHCCCEecCCEeeeeCCCCCCCchHHHHhcCCC-CCcceE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998653 35554
Q ss_pred -ceeEEeccCCCCcccccccccCCccceeccCCCCccccccEEEECCCcceeeeeecccccCCCCCcCCCCCCCCCcccC
Q 003799 314 -YAVFRMVSAPPSTSGLLNEFLPDLGLAVWTTTPWTVPANAAVAVNAKLQYAVVEIQSLLEGDSAAPANKKSRPGNVLKD 392 (794)
Q Consensus 314 -~v~F~l~~~~~~~~~~l~~~~~~~~l~iwTT~PwTi~~n~av~v~p~~~Y~~v~~~~~~~~~s~~~~~~~~~~g~~~~~ 392 (794)
||+|+ .+ .+.++++|||||||||||+||||||+++|++++.+
T Consensus 160 ~~ikf~-~~-------------~~~~l~~~TtrPeTl~g~tai~V~P~~~Y~~~~~~----------------------- 202 (897)
T PRK12300 160 TLIKFE-ES-------------EDLILPAATLRPETIFGVTNLWVNPDATYVKAEVD----------------------- 202 (897)
T ss_pred EEEEEe-CC-------------CceEEEEEECCcchhccceEEEECCCCcEEEEEEC-----------------------
Confidence 67887 11 23589999999999999999999999999998864
Q ss_pred CcceEeeecccchHHHHHhcCCceEEEeeeccCcccCCeeecCCCCCcccEEeccCcccccCCCCceeecCCCChhhHHH
Q 003799 393 QKKVFIIVASDLVPTLEAKWGTKLVIKKTLAGSDLENCRYVHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVT 472 (794)
Q Consensus 393 ~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~G~~L~g~~~~~Pl~~~~~pvvi~~~~V~~~~GTG~Vh~aPaHg~~D~~~ 472 (794)
++.||+++++++++..+ +.+++++++++|++|+|++|.||++++.+|| ++++||+++.|||+||+|||||++||.+
T Consensus 203 --~e~~i~a~~~~~~~~~~-~~~~~~~~~~~G~~l~G~~~~~Pl~~~~ipi-l~~~~V~~~~GTGvV~~~Pah~~~Dy~~ 278 (897)
T PRK12300 203 --GEKWIVSKEAAEKLSFQ-DRDVEIIEEIKGSELIGKKVKNPVTGKEVPI-LPADFVDPDNGTGVVMSVPAHAPYDYVA 278 (897)
T ss_pred --CEEEEEeHHHHHHHhcC-cCCceEEEEeehHHhcCCEEECCCCCCeEEE-eccCeeecCCCeeeEEeCCCCCHHHHHH
Confidence 57899999999988654 3468899999999999999999999999999 7899999999999999999999999999
Q ss_pred HHHhC--------CCccccC-----------------------C---------------CCCccccccCCCCCccccccc
Q 003799 473 SLKYG--------LPILSPV-----------------------D---------------DEGKFTEEAGKFSGLDVLGDG 506 (794)
Q Consensus 473 ~~~~g--------l~i~~~v-----------------------d---------------~~G~~~~~~~~~~G~~v~~ea 506 (794)
++++| |+++.++ | .+|+|++++|+|.|+.|. +|
T Consensus 279 ~~~~~~~~~~~~~l~~i~ii~v~~~g~~~a~~~~~~~~~~~~~d~~l~~a~~~~y~~~f~~G~~~~~~g~~~G~~v~-eA 357 (897)
T PRK12300 279 LRDLKKNKELLDVIEPIPLIEVEGYGEFPAKEVVEKLGIKSQEDPELEEATKEVYRAEFHKGVLKENTGEYAGKPVR-EA 357 (897)
T ss_pred HHHhccccccccccCCcceEecCCcCcccHHHHHHHhCCCCccchhHHHHHHHhhhccccceEEeecccCcCCeEHH-HH
Confidence 99998 6543322 4 489999888999999995 99
Q ss_pred hHHHHHHHHhcCCcccccccccccccccCCCCcEEEcc-cCccccchh--hHHHHHHhhhcCeeecCCC-----------
Q 003799 507 NVAVVKYLDEQMSLIMEEPYEHKYPYDWRTKKPTIFRA-TEQWFASVE--GFRQAAMDAIGQVKWVPPQ----------- 572 (794)
Q Consensus 507 ~~~ii~~L~~~g~l~~~~~~~h~yp~~WRt~~pii~r~-t~QWfi~~~--~~~~~~l~~i~~v~~~P~~----------- 572 (794)
++.|++.|++.|.+++...+.| +|+||||++|||+++ ++|||++++ .+++++++++++++|+|++
T Consensus 358 ~~~I~~~L~~~g~~~~~~~~~~-~~~~~R~~~~~i~~~~~~QWFi~~~~~~~k~~~~~~~~~~~~~P~~~~~~~~~~l~~ 436 (897)
T PRK12300 358 REKITKDLIEKGIADIMYEFSN-RPVYCRCGTECVVKVVKDQWFIDYSDPEWKELAHKALDNMEIIPEEYRKEFENTIDW 436 (897)
T ss_pred HHHHHHHHHHCCCeEEEEecCC-CCcCcCCCCEEEEEecCCceEEEcCcHHHHHHHHHHHccCEEECHHHHHHHHHHHhh
Confidence 9999999999999999888788 688999999999997 599999997 6999999999888888775
Q ss_pred --------------------------------------------------------------------------------
Q 003799 573 -------------------------------------------------------------------------------- 572 (794)
Q Consensus 573 -------------------------------------------------------------------------------- 572 (794)
T Consensus 437 l~DW~ISRqr~WGtpiP~~~~w~~esl~ds~iY~~~~~i~~~l~~~g~~~~~l~~~~~D~~~~~~~~~~~~~~~sg~p~~ 516 (897)
T PRK12300 437 LKDRACARRRGLGTRLPWDEEWIIESLSDSTIYMAYYTIAHKIREYGIKPEQLTPEFFDYVFLGKGDPEEVSKKTGIPKE 516 (897)
T ss_pred hhhcceeeccccCCcCCccCCEEeeeccccchhhhHHHHHHHHHHcCCChHHCChhhCceEEeCCCccccCchhcCCCHH
Confidence
Q ss_pred --------------------------------------------------------------------------CCCCCC
Q 003799 573 --------------------------------------------------------------------------EAPGYG 578 (794)
Q Consensus 573 --------------------------------------------------------------------------~~~~yG 578 (794)
++++||
T Consensus 517 ~~~~~~~~f~~~~P~D~~~~GkDii~~Hl~~~~~~~~a~~~~~~~Pk~v~~hG~vl~~G~KMSKS~GNvVdp~eii~~yG 596 (897)
T PRK12300 517 ILEEMREEFLYWYPVDWRHSGKDLIPNHLTFFIFNHVAIFPEEKWPRGIVVNGFVLLEGKKMSKSKGNVIPLRKAIEEYG 596 (897)
T ss_pred HHHHHHHHHhccCCceEEEeeeccCccHHHHHHHHHHHhcCCCccCcEEEEcceEEECCccccCcCCCCCCHHHHHHHcC
Confidence 335899
Q ss_pred Cchhhhhhhh-cCCCCceecChHHHHHHHHHHHHHHhHHHHHHhcccCCCCCCCcCCCCCChhhHHHHHHHHHHHHHHHH
Q 003799 579 ADVLRLWVSS-VDYTGDVMIGPQVLRQMSDIYRKLRGTLRYLLGNLHDWRVGNSISYDDLPMIDQYALFQLENIVKNIRE 657 (794)
Q Consensus 579 aD~lRl~las-~~~~~Di~~s~~~l~~~~~~~~kl~Nt~rfll~nl~~~~~~~~~~~~~l~~~D~~il~~l~~lv~~v~~ 657 (794)
||++|||+++ +++++|++|+++.++.+.++++|++|+++++.+... ...+..+|+|++++++.+++++++
T Consensus 597 aDalRl~L~~~~~~~~D~~fs~~~v~~~~~~l~r~~~~~~~~~~~~~---------~~~~~~~D~wils~l~~~i~~v~~ 667 (897)
T PRK12300 597 ADVVRLYLTSSAELLQDADWREKEVESVRRQLERFYELAKELIEIGG---------EEELRFIDKWLLSRLNRIIKETTE 667 (897)
T ss_pred hHHHHHHHHhCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHhcCCC---------ccccCHhHHHHHHHHHHHHHHHHH
Confidence 9999999997 588999999999999999999999999998765321 113567899999999999999999
Q ss_pred HHhcccHHHHHHHHHHHHHHhhhHHHHHhhccccccCCCChHhHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhCCCC
Q 003799 658 SYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFA 737 (794)
Q Consensus 658 ~~e~y~f~~ai~~l~~f~~~~lsn~Yle~~K~rly~~~~d~~~r~s~~~vL~~iL~~l~~lLaP~~P~~aEEiw~~L~~~ 737 (794)
+|++|+|++|++.++.|+++ .+|+|++.+|+ +++++|+++|+.+++||+||+||+|||||+.|+.
T Consensus 668 ~~e~~~~~~A~~~i~~~l~~-~~n~Yi~~~k~-------------~~~~~l~~~l~~~~~lLaPf~P~~aEeiw~~L~~- 732 (897)
T PRK12300 668 AMESFQTRDAVQEAFYELLN-DLRWYLRRVGE-------------ANNKVLREVLEIWIRLLAPFTPHLAEELWHKLGG- 732 (897)
T ss_pred HHHhcCHHHHHHHHHHHHHH-HHHHHHHhcch-------------HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHcCC-
Confidence 99999999999999877766 46999998765 4677899999999999999999999999999974
Q ss_pred ccccCCCCCCceeecCCCCCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhcCC
Q 003799 738 YTLEDGSAAEFVFESKWPVLDEKWRTFPVGEIYFWGKILEVIVVVTYLNETEGF 791 (794)
Q Consensus 738 ~~~~~~~~~~sV~~~~wP~~~e~~~~~~~~~~~~~~~i~~lR~~v~~~~e~~~~ 791 (794)
.+||+.++||++++.+.+ ++++..++.++++-..++.+....+.
T Consensus 733 --------~~sv~~~~wP~~~~~~~d--~~~~~~~~~~~~~i~~ir~~~~~~~~ 776 (897)
T PRK12300 733 --------EGFVSLEKWPEPDESKID--EEAELAEEYVKRLIEDIREILKVAKI 776 (897)
T ss_pred --------CCeEEeCCCCCCCcccCC--HHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 269999999999988776 67777788888888888877776654
No 23
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=100.00 E-value=1.6e-97 Score=894.10 Aligned_cols=559 Identities=25% Similarity=0.394 Sum_probs=446.5
Q ss_pred CCCCCcccccHHHHHHHhhcCcchhccccCCCCcEEEEcCCCCCCCcccchHHHhHHHHHHHHHHHHhCCCeeEEecccc
Q 003799 118 GMRANALVREPEIHKLWDDHQVFLRVADKNDGENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWD 197 (794)
Q Consensus 118 ~~r~n~~~~E~~~~~~W~~~~~~~~~~~~~~~~~f~i~~~pPy~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G~D 197 (794)
.+++|+..+|++||++|+++++|++..+ .+++|++++|||||||.|||||++|++++|+++||+||+||+|+|++|||
T Consensus 2 ~~~y~~~~iE~~w~~~W~~~~~f~~~~~--~~~~~~i~~~pPy~nG~lHiGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D 79 (805)
T PRK00390 2 MERYNPKEIEKKWQKYWEENKTFKTTED--SSKKYYVLDMFPYPSGGLHMGHVRNYTIGDVIARYKRMQGYNVLHPMGWD 79 (805)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCcccCcc--CCCCEEEEccCCCCCCCcchhhhHHHHHHHHHHHHHHhcCCcccccCccC
Confidence 4678999999999999999999998643 33479999999999999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHhhchhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCCccccCChHHHHHHHHHHHHHHHc
Q 003799 198 CHGLPIELKVLQSLDEDAKKDLTPSKLRAKAAKFAKATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQ 277 (794)
Q Consensus 198 ~hGlpie~~~~k~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~lGi~~dwd~~~~T~d~~~~~~v~~~f~~L~~k 277 (794)
|||+|||.++++ .+.+|. +|++++++.|+++|++||++.||+++|.|+||.|.+.++++|.+|+++
T Consensus 80 ~~Glpie~~a~~-------~g~~~~-------~~~~~~~~~~~~~~~~lGi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~ 145 (805)
T PRK00390 80 AFGLPAENAAIK-------TGTHPA-------EWTYENIANMKKQLKSLGFSYDWSREIATCDPEYYKWTQWIFLKLYEK 145 (805)
T ss_pred CCCCHHHHHHHH-------cCCCHH-------HHHHHHHHHHHHHHHHhCCcccCCCCeecCCHHHHHHHHHHHHHHHHC
Confidence 999999999873 355664 469999999999999999999999999999999999999999999999
Q ss_pred CCeeecccCceeccCCCccccccccccCCccccccc--ce-------eEEeccCCCCccccccc----------------
Q 003799 278 GYIYRGKKPVHWSPSSRTALAEAELEYPEGHVSRSI--YA-------VFRMVSAPPSTSGLLNE---------------- 332 (794)
Q Consensus 278 GlIy~~~~~v~w~~~~~t~Lae~Evey~e~~~~~~~--~v-------~F~l~~~~~~~~~~l~~---------------- 332 (794)
|+||++.++|+|||.|+|+||++||+. ++|..|. ++ +|+++++.+.+.+.++.
T Consensus 146 Gliy~~~~~v~wcp~~~t~La~~ev~~--~~~~~~~~~~~~~~~~~~f~~i~~~~~~L~~~l~~~~~w~~~v~~~~~~wi 223 (805)
T PRK00390 146 GLAYRKESPVNWCPVDGTVLANEQVID--GRCWRCGAPVEKKELRQWFLKITDYADELLDDLDKLEDWPEKVKTMQRNWI 223 (805)
T ss_pred CCEEEecCEEEecCCcCCCCCHHHhhC--CeecccCCeeEEEecceeeEecchhHHHHHHHHHhhccCcHHHHHHHHhhc
Confidence 999999999999999999999999983 4444443 22 35555443322211100
Q ss_pred ---------c-c--CCccceeccCCCCccccccEEEECCCcceeeeeecccccCCCCCcCCCCCCCCCcccCCcceEeee
Q 003799 333 ---------F-L--PDLGLAVWTTTPWTVPANAAVAVNAKLQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFIIV 400 (794)
Q Consensus 333 ---------~-~--~~~~l~iwTT~PwTi~~n~av~v~p~~~Y~~v~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~iv 400 (794)
+ + .+.+++||||||||||||+||||||++.|+.+..++ + ..
T Consensus 224 g~~~~~~i~f~~~~~~~~l~v~TTrPeTl~g~~aiav~p~~~~~~~~~~~-------------------------~--~~ 276 (805)
T PRK00390 224 GRSEGAEVTFKVEDSDEKIEVFTTRPDTLFGATYLVLAPEHPLVEKLAEQ-------------------------N--PA 276 (805)
T ss_pred cccceEEEEEEccCCCCEEEEEeCCchHhhcceEEEECCCChhHHhhhcc-------------------------h--HH
Confidence 0 1 235799999999999999999999999998654210 0 01
Q ss_pred cccchHHHHHhcCCc-eEEEeeeccCcccCCeeecCCCCCcccEEeccCcccccCCCCceeecCCCChhhHHHHHHhCCC
Q 003799 401 ASDLVPTLEAKWGTK-LVIKKTLAGSDLENCRYVHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLP 479 (794)
Q Consensus 401 ~~~~~~~~~~~~~~~-~~~~~~~~G~~L~g~~~~~Pl~~~~~pvvi~~~~V~~~~GTG~Vh~aPaHg~~D~~~~~~~gl~ 479 (794)
..++++.+....+.+ ..++++++|. |+|++|.||++++++|| +.++||++++|||+||+|||||++||+++++||||
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~g~-l~g~~~~~P~~~~~ipi-~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~L~ 354 (805)
T PRK00390 277 VAAFIEECKKKSDLERQTETKEKTGV-FTGLYAIHPLTGEKIPV-WIADYVLMDYGTGAVMAVPAHDQRDFEFAKKYGLP 354 (805)
T ss_pred HHHHHHHHhhhcchhhhhcccceeee-ecCcEEECCCCCCeeeE-EEeccccCCCCCCeEEEcCCCCHHHHHHHHHcCCC
Confidence 222233322222221 3445688996 99999999999999999 56999999999999999999999999999999999
Q ss_pred ccccCCCCCc--------cccc-----cCCCCCccccccchHHHHHHHHhcCCccccccc--------ccccccccCCCC
Q 003799 480 ILSPVDDEGK--------FTEE-----AGKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPY--------EHKYPYDWRTKK 538 (794)
Q Consensus 480 i~~~vd~~G~--------~~~~-----~~~~~G~~v~~ea~~~ii~~L~~~g~l~~~~~~--------~h~yp~~WRt~~ 538 (794)
++++||++|. |+.+ .+.|.|+.+. +|+++|++.|++.|.+.....| +++| |+++.
T Consensus 355 ~~~~i~~~g~~~~~~~~~~~~~g~~~~~~~~~Gl~~~-~a~~~Ii~~L~~~g~~~~~v~~~l~DW~ISRQR~---WG~PI 430 (805)
T PRK00390 355 IKPVIEPGDGDEDISEEAYTGDGVLINSGELDGLDSE-EAKEAIIAWLEEKGLGKRKVNYRLRDWGISRQRY---WGEPI 430 (805)
T ss_pred ceeeeCCCCcccccccccccCCeEEEeccccCCCCHH-HHHHHHHHHHHHcCCCCCceEEECCCcccccccc---CCCce
Confidence 9999986552 3333 2789999995 9999999999999987654444 4666 77777
Q ss_pred cEEEcc-----------------------------------------------------cCccccchhhHHH--------
Q 003799 539 PTIFRA-----------------------------------------------------TEQWFASVEGFRQ-------- 557 (794)
Q Consensus 539 pii~r~-----------------------------------------------------t~QWfi~~~~~~~-------- 557 (794)
|++|+. .|+||.+...+-.
T Consensus 431 Pi~~~~~~g~~~v~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~re~Dv~DtwfdSsw~~~~~~~p~~~~ 510 (805)
T PRK00390 431 PIIHCEDCGIVPVPEEDLPVVLPEDVVPDGTGSPLAKHPEWVNVTCPKCGKPARRETDTMDTFVGSSWYYLRYTDPHNDE 510 (805)
T ss_pred eEEEECCCCceeCchHhhhhhhhhhcccCCCCChhhhchhhhCCCccccCCCceeCCcccccccccccHHHHhcCccccc
Confidence 777641 1344443211000
Q ss_pred -----------------------------------------------------------HHHhhhcCeeecCCCCCCCCC
Q 003799 558 -----------------------------------------------------------AAMDAIGQVKWVPPQEAPGYG 578 (794)
Q Consensus 558 -----------------------------------------------------------~~l~~i~~v~~~P~~~~~~yG 578 (794)
||+|+.+|+.. |.+++++||
T Consensus 511 ~~~~~~~~~~~~P~Dly~~G~D~~i~hL~y~Rf~~~~l~~~~~~~~~~Pfk~v~~~G~vKMSKS~GN~i~-p~~~i~~yg 589 (805)
T PRK00390 511 APFDKEAANYWLPVDQYIGGIEHAVLHLLYARFFTKVLRDLGLVSSDEPFKKLLTQGMVKMSKSKGNVVD-PDDIIEKYG 589 (805)
T ss_pred CcCChHHhhCcCCCcEEeccHHHHHHHHHHHHHHHHHHHHhhcccCCcchhhheecCcEEeCCCCCCCCC-HHHHHHHcC
Confidence 12222222221 222456899
Q ss_pred Cchhhhhhhh-cCCCCceecChHHHHHHHHHHHHHHhHHHHHHhcccCCCCCCCcCCCCCChhhHHHHHHHHHHHHHHHH
Q 003799 579 ADVLRLWVSS-VDYTGDVMIGPQVLRQMSDIYRKLRGTLRYLLGNLHDWRVGNSISYDDLPMIDQYALFQLENIVKNIRE 657 (794)
Q Consensus 579 aD~lRl~las-~~~~~Di~~s~~~l~~~~~~~~kl~Nt~rfll~nl~~~~~~~~~~~~~l~~~D~~il~~l~~lv~~v~~ 657 (794)
||++|||+++ +++..|++|+++.++++.++++||||++++.+++..++.. +...+|+|++++++++++++++
T Consensus 590 aD~lRl~l~~~~~~~~d~~~s~~~l~~~~~~l~kl~~~~~~~~~~~~~~~~-------~~~~~D~~il~~l~~~i~~v~~ 662 (805)
T PRK00390 590 ADTARLFEMFAGPPEKDLEWSDSGVEGAYRFLQRVWRLVVDAKGEAGALDV-------AALSEDKELRRKLHKTIKKVTE 662 (805)
T ss_pred hHHHHHHHHhcCCccCCcccCHHHHHHHHHHHHHHHHHHHHhhhcccccCc-------ccChhhHHHHHHHHHHHHHHHH
Confidence 9999999987 5899999999999999999999999999997666543321 2346899999999999999999
Q ss_pred HHhcccHHHHHHHHHHHHHHhhhHHHHHhhccccccCCCChHhHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhCCCC
Q 003799 658 SYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFA 737 (794)
Q Consensus 658 ~~e~y~f~~ai~~l~~f~~~~lsn~Yle~~K~rly~~~~d~~~r~s~~~vL~~iL~~l~~lLaP~~P~~aEEiw~~L~~~ 737 (794)
+|++|+|++|++.+++|++ +++++| + ++++++|+++++.+++|||||+||+|||+|+.|+.
T Consensus 663 ~~e~~~f~~ai~~l~~f~n-~lsk~~-~----------------~~~~~~l~~~l~~l~~lLaPf~P~iaEElw~~L~~- 723 (805)
T PRK00390 663 DIERLRFNTAIAALMELVN-ALYKAE-D----------------EQDKAVLREALEILVRLLAPFAPHLAEELWEKLGH- 723 (805)
T ss_pred HHHcCCHHHHHHHHHHHHH-HHHHHH-H----------------HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHcCC-
Confidence 9999999999999999996 487766 1 24677899999999999999999999999999963
Q ss_pred ccccCCCCCCceeecCCCCCCcccC
Q 003799 738 YTLEDGSAAEFVFESKWPVLDEKWR 762 (794)
Q Consensus 738 ~~~~~~~~~~sV~~~~wP~~~e~~~ 762 (794)
.+||+.++||++++.++
T Consensus 724 --------~~sv~~~~wP~~~~~~~ 740 (805)
T PRK00390 724 --------EGSIANAPWPTADEAAL 740 (805)
T ss_pred --------CCeeEecCCCCCCHHHh
Confidence 26899999999887654
No 24
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=100.00 E-value=9.4e-98 Score=873.99 Aligned_cols=398 Identities=43% Similarity=0.817 Sum_probs=361.0
Q ss_pred HHHHHHhhcCcchhccc-cCCCCcEEEEcCCCCCCCcccchHHHhHHHHHHHHHHHHhCCCeeEEeccccCCCchHHHHH
Q 003799 129 EIHKLWDDHQVFLRVAD-KNDGENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKV 207 (794)
Q Consensus 129 ~~~~~W~~~~~~~~~~~-~~~~~~f~i~~~pPy~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G~D~hGlpie~~~ 207 (794)
+||++|+++++|++..+ +.++++|++++||||+||.||||||+|++++|+++||+||+||+|+|+|||||||+|||.++
T Consensus 1 k~~~~W~~~~~~~~~~~~~~~~~~f~i~~~PPy~nG~lH~GH~~~~~~~D~i~Ry~rm~G~~v~~~~G~D~~Glpie~~v 80 (601)
T PF00133_consen 1 KWQKFWEENKLFEKQLEKNKNKPKFFIHDPPPYANGDLHIGHALNKTIKDIIARYKRMQGYNVLFPPGWDCHGLPIEAKV 80 (601)
T ss_dssp HHHHHHHHTTCCHHHHHCTTTSGEEEEEE---BTSSS-BHHHHHHHHHHHHHHHHHHCTTSEEEEEEEEB--SHHHHHHH
T ss_pred CHhHHHhhCCCcccccccCCCCCcEEEEeCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCcEeCCCCCcCCCCcchhhhH
Confidence 69999999999999833 34689999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhhchhh---hhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCCccccCChHHHHHHHHHHHHHHHcCCeeecc
Q 003799 208 LQSLDED---AKKDLTPSKLRAKAAKFAKATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGK 284 (794)
Q Consensus 208 ~k~~~~~---~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~lGi~~dwd~~~~T~d~~~~~~v~~~f~~L~~kGlIy~~~ 284 (794)
+|.++.. ++.++++++|++.|++|++++++.|+++|++||+++||+++|.|+||.|+++++++|.+|+++|||||+.
T Consensus 81 ek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~Dw~~~y~T~d~~y~~~v~~~F~~l~~kglIyr~~ 160 (601)
T PF00133_consen 81 EKKLGIKEKKDRKDLGREEFREECREWAEEFIEEQKEQFKRLGVSIDWDREYFTMDPEYEKFVWWQFKKLYEKGLIYRGK 160 (601)
T ss_dssp HHHTTTTSHHHCSCSTHHHHHHHHHHHHHHHHHHHHHHHHHTT--SECTCEEETTSHHHHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHhhcccccccccccccccchhhhcchhhhhhhhhhhhhhheeeecccCCceEECCccHhHHHHHHHHHHHhcCcEEeeC
Confidence 9988643 4567899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCceeccCCCccccccccccCCcccccccceeEEeccCCCCcccccccccCCccceeccCCCCccccccEEEECCCccee
Q 003799 285 KPVHWSPSSRTALAEAELEYPEGHVSRSIYAVFRMVSAPPSTSGLLNEFLPDLGLAVWTTTPWTVPANAAVAVNAKLQYA 364 (794)
Q Consensus 285 ~~v~w~~~~~t~Lae~Evey~e~~~~~~~~v~F~l~~~~~~~~~~l~~~~~~~~l~iwTT~PwTi~~n~av~v~p~~~Y~ 364 (794)
+||+|||.|+|+|||+||+|++ +.++++||+|++.+. .+.+|+||||||||||||+||+|||+..|+
T Consensus 161 ~pv~w~p~~~t~lsd~Ev~~~~-~~~~~~~v~f~~~~~------------~~~~l~i~TtrPeTl~~~~ai~vnP~~~Y~ 227 (601)
T PF00133_consen 161 KPVNWCPSCQTALSDHEVEYKE-VKSPSIYVKFPLKDG------------EEVYLVIWTTRPETLPGNTAIAVNPDFDYV 227 (601)
T ss_dssp EEEEEETTTTEEE-GGGEEEEE-EEEEEEEEEEEESSS------------SEEEEEEEES-GGGGGG-BEEEE-TTSEEE
T ss_pred CCCCcCcccccchhhhhccccc-ccCceEEEEEEecCc------------cceEEEEEechhhHHhCCeeEEECCCccce
Confidence 9999999999999999999965 789999999999652 125899999999999999999999999999
Q ss_pred eeeecccccCCCCCcCCCCCCCCCcccCCcceEeeecccchHHHHHhcCCceEEEeeeccCcccCCeeecCCCCCcccEE
Q 003799 365 VVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFIIVASDLVPTLEAKWGTKLVIKKTLAGSDLENCRYVHPVDNRQCPVV 444 (794)
Q Consensus 365 ~v~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~G~~L~g~~~~~Pl~~~~~pvv 444 (794)
. +++.+|+++++++++..+.+.. +.+++|++|+|++|.||+.++.+||
T Consensus 228 ---~-------------------------~~~~~i~~~~~~~~~~~~~~~~---~~~~~g~~L~g~~~~~P~~~~~~~v- 275 (601)
T PF00133_consen 228 ---I-------------------------NGERYIVAKDLVEKLSKQEKTK---LEDFRGKELVGLKYIHPLTGREVPV- 275 (601)
T ss_dssp ---E-------------------------TTEEEEEEHHHHHHHHTTTSSS---EEEEECHHHTTSEEE-TTSSSSEEE-
T ss_pred ---e-------------------------CCeeehHHHHHHHHHHhhhhhc---ccccCcceecCcEeccccccceeEE-
Confidence 2 2688999999999998876655 8899999999999999999999999
Q ss_pred eccCcccccCCCCceeecCCCChhhHHHHHHhCCCccccCCCCCccccccCCCCCccccccchHHHHHHHHhcCCccccc
Q 003799 445 IGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPILSPVDDEGKFTEEAGKFSGLDVLGDGNVAVVKYLDEQMSLIMEE 524 (794)
Q Consensus 445 i~~~~V~~~~GTG~Vh~aPaHg~~D~~~~~~~gl~i~~~vd~~G~~~~~~~~~~G~~v~~ea~~~ii~~L~~~g~l~~~~ 524 (794)
|+++||+++.|||+||+|||||++||.++++++|+++++||++|++++++++|.|+.|. +|++.|++.|+++|++++.+
T Consensus 276 i~~~~V~~~~GTGiV~~~Pah~~~Dy~~~~~~~l~~~~~id~~G~~~~~~~~~~G~~v~-~ar~~ii~~L~~~g~l~~~~ 354 (601)
T PF00133_consen 276 IPDDFVDMDKGTGIVHSAPAHGPDDYEIGKKHNLPIINPIDEDGRFTEEAGKFKGMKVF-EAREKIIEDLKEKGLLLKIE 354 (601)
T ss_dssp EEETTS-SSSTTSEEEE-TTT-HHHHHHHHHHHHCCGCCCCCTSTBBSCCSTTTTSBHH-HHHHHHHHHHHHTTSEEEEE
T ss_pred EcccccccccchhhhhhcccCCHHHHHHHhhcCceeeEecCCCceEeecccccCCceee-eccHHHHHHHHHhhhhcccc
Confidence 78999999999999999999999999999999999999999999999999999999996 99999999999999999999
Q ss_pred ccccccccccCCCCcEEEcccCccccchhhHHHHHHhhhcCeeecCCC
Q 003799 525 PYEHKYPYDWRTKKPTIFRATEQWFASVEGFRQAAMDAIGQVKWVPPQ 572 (794)
Q Consensus 525 ~~~h~yp~~WRt~~pii~r~t~QWfi~~~~~~~~~l~~i~~v~~~P~~ 572 (794)
.+.|+|||||||++||++++++|||++++++++++++++++|+|+|+.
T Consensus 355 ~~~~~~p~c~R~~~~ii~~~~~QWFi~~~~~k~~~l~~~~~i~~~P~~ 402 (601)
T PF00133_consen 355 EIEHSYPHCWRSGTPIIPRLTDQWFIKYDDWKKKALEALEKIKFYPES 402 (601)
T ss_dssp EEEEEEEEETTTSCBEEEEEEEEEEEEHHHHHHHHHHHHHTSEESSST
T ss_pred ccccccceecCCCCEEEecccceeEEecHHhHHHHHhhcccceEEccc
Confidence 999999999999999999999999999999999999999999999997
No 25
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=100.00 E-value=2.4e-95 Score=876.53 Aligned_cols=557 Identities=23% Similarity=0.380 Sum_probs=451.6
Q ss_pred CCcccccHHHHHHHhhcCcchhccccCCCCcEEEEcCCCCCCCcccchHHHhHHHHHHHHHHHHhCCCeeEEeccccCCC
Q 003799 121 ANALVREPEIHKLWDDHQVFLRVADKNDGENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHG 200 (794)
Q Consensus 121 ~n~~~~E~~~~~~W~~~~~~~~~~~~~~~~~f~i~~~pPy~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G~D~hG 200 (794)
+|+..+|++||++|+++++|++..+ .++++|++++|||||||.|||||++|++++|+++||+||+||+|+|++||||||
T Consensus 1 y~~~~iE~kwq~~W~~~~~f~~~~~-~~k~k~~v~~~pPy~nG~lHiGH~~~~~~~Dvi~Ry~rm~G~~V~~~~G~D~~G 79 (842)
T TIGR00396 1 YNHIEIEEKWQQKWKENKVFKFTDD-SNKPKYYILDMFPYPSGALHMGHVRNYTITDVLSRYYRMKGYNVLHPMGWDAFG 79 (842)
T ss_pred CCHHHHHHHHHHHHHhcCCcccCCC-CCCCCEEEEcCCCCCCCccccchhHHHHHHHHHHHHHHhcCCceeccCCcCCCC
Confidence 4677899999999999999998643 467889999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHhhchhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCCccccCChHHHHHHHHHHHHHHHcCCe
Q 003799 201 LPIELKVLQSLDEDAKKDLTPSKLRAKAAKFAKATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYI 280 (794)
Q Consensus 201 lpie~~~~k~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~lGi~~dwd~~~~T~d~~~~~~v~~~f~~L~~kGlI 280 (794)
+|||.++++ .+++|.+ |+.++++.++++|++||++.||+++|.|+||.|.+.++++|.+|+++|+|
T Consensus 80 lpie~~a~~-------~g~~p~~-------~~~~~~~~~~~~~~~lG~~~Dw~~~~~T~d~~y~~~~~~~F~~L~~kGli 145 (842)
T TIGR00396 80 LPAENAAIK-------RGIHPAK-------WTYENIANMKKQLQALGFSYDWDREIATCDPEYYKWTQWIFLELFEKGLA 145 (842)
T ss_pred hHHHHHHHH-------cCCCHHH-------HHHHHHHHHHHHHHHhCCcccCCCCcccCCHHHHHHHHHHHHHHHHCCCe
Confidence 999999873 4567754 59999999999999999999999999999999999999999999999999
Q ss_pred eecccCceeccCCCccccccccccCCcccccccce---------eEEeccCCCCccccccc-------------------
Q 003799 281 YRGKKPVHWSPSSRTALAEAELEYPEGHVSRSIYA---------VFRMVSAPPSTSGLLNE------------------- 332 (794)
Q Consensus 281 y~~~~~v~w~~~~~t~Lae~Evey~e~~~~~~~~v---------~F~l~~~~~~~~~~l~~------------------- 332 (794)
|++.++|+|||.|+|+||++||++ +|+|.+|... .|+++++++.+.+.++.
T Consensus 146 y~~~~~v~wcp~~~t~La~~ev~~-~g~~~~~g~~v~~~~~~~~f~~i~~~~~~l~~~l~~~~~wp~~v~~~q~~wig~s 224 (842)
T TIGR00396 146 YVKEADVNWCPNDGTVLANEQVDS-DGRSWRGGTPVEKKELKQWFLKITAYAEELLNDLEELDHWPESVKEMQRNWIGKS 224 (842)
T ss_pred EeeccceEEeCCCCCCccHHHHhh-cCccccCCCcceEeecceeEEehhhhHHHHHHHHhhhccccHHHHHHHHhccccc
Confidence 999999999999999999999964 3555444321 46666655332221110
Q ss_pred ------c-c--CCccceeccCCCCccccccEEEECCCcceeeeeecccccCCCCCcCCCCCCCCCcccCCcceEeeeccc
Q 003799 333 ------F-L--PDLGLAVWTTTPWTVPANAAVAVNAKLQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFIIVASD 403 (794)
Q Consensus 333 ------~-~--~~~~l~iwTT~PwTi~~n~av~v~p~~~Y~~v~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~iv~~~ 403 (794)
+ + .+.+++||||||||||||+||+|||++.|+.+... ..+
T Consensus 225 ~g~~i~f~~~~~~~~l~v~TTrP~Tl~g~~~iav~p~~~~~~~~~~-------------------------------~~~ 273 (842)
T TIGR00396 225 EGVEITFKIADHKEKIAVFTTRPDTIFGVTYLALAPEHPLVEKIAE-------------------------------NNP 273 (842)
T ss_pred ceEEEEEEcCCCCCEEEEEeCCcHHhhhccEEEECCCCHHHHhhhc-------------------------------chH
Confidence 0 1 13479999999999999999999999998754211 112
Q ss_pred chHHHHHhcC----CceEEEeeeccCcccCCeeecCCCCCcccEEeccCcccccCCCCceeecCCCChhhHHHHHHhCCC
Q 003799 404 LVPTLEAKWG----TKLVIKKTLAGSDLENCRYVHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLP 479 (794)
Q Consensus 404 ~~~~~~~~~~----~~~~~~~~~~G~~L~g~~~~~Pl~~~~~pvvi~~~~V~~~~GTG~Vh~aPaHg~~D~~~~~~~gl~ 479 (794)
.++.+.+... .+..++.+.+|..|.|++|.||++++.+||| .++||++++|||+||+|||||++||+++++||||
T Consensus 274 ~v~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~P~~~~~ipi~-~~~~V~~~~GTG~V~~~Pahd~~D~~~~~k~~L~ 352 (842)
T TIGR00396 274 KVAAFIKKILQKTTTERTKETKLKKGVFTGIKAIHPLTGEKIPIW-VANYVLASYGTGAVMGVPAHDERDFEFAQKYKLP 352 (842)
T ss_pred HHHHHHHHHhccCchhhhhhhcccccEecCCEEECCCCCCEeEEE-EeCcccCCCCCCeEEEcCCCCHHHHHHHHHhCCC
Confidence 2344443321 1233445667778999999999999999995 5999999999999999999999999999999999
Q ss_pred ccccCCC------------CCccccccCCCCCccccccchHHHHHHHHhcCCccccccc--------ccccccccCCCCc
Q 003799 480 ILSPVDD------------EGKFTEEAGKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPY--------EHKYPYDWRTKKP 539 (794)
Q Consensus 480 i~~~vd~------------~G~~~~~~~~~~G~~v~~ea~~~ii~~L~~~g~l~~~~~~--------~h~yp~~WRt~~p 539 (794)
++++|++ +|.+++ .++|.|+.+. +|++.|++.|++.|.+.+...| +++| |+|+.|
T Consensus 353 i~~vi~~~~~~~~~~~~~~~G~~~~-~~~~~Gl~~~-~A~~~Ii~~L~~~g~~~~~v~yrlrDW~ISRQRy---WG~PIP 427 (842)
T TIGR00396 353 IKVVIDPAGKNLKTQAFTEDGVLVN-SGEFNGLNSS-EAREAIIAMLEKEGKGKRKVNYRLRDWLFSRQRY---WGEPIP 427 (842)
T ss_pred cceeeCCcccccccccccCCceEec-chhcCCCCHH-HHHHHHHHHHHHcCCCCceEEeecccceeecccc---cCCceE
Confidence 9999983 677774 4889999995 9999999999999998776666 4667 888888
Q ss_pred EEEcc------------------------------------------------------cCccccchhh-----------
Q 003799 540 TIFRA------------------------------------------------------TEQWFASVEG----------- 554 (794)
Q Consensus 540 ii~r~------------------------------------------------------t~QWfi~~~~----------- 554 (794)
++|+- .|+||.+...
T Consensus 428 i~~~~~~g~~~v~~~~lp~~l~~~~~~~~~~~~pl~~~~~~~~~~cp~cg~~~~retDtmDtw~dSswy~~r~~~p~~~~ 507 (842)
T TIGR00396 428 IIHCEDGGAVPVPEEDLPVILPELVNYDPDGNSPLSRIQEWVNVTCPSCGKPALRETDTMDTFAGSSWYYLRYLDPKNTD 507 (842)
T ss_pred EEEECCCCeEeCcchhcchhhhhhhhccCCCCCchhhhhhhhcCcCccCCCCcEeCCCCCCCcccCCHHHHHhhCCCCcC
Confidence 87742 1334332200
Q ss_pred ----------------------------------------------------------HHH-------------------
Q 003799 555 ----------------------------------------------------------FRQ------------------- 557 (794)
Q Consensus 555 ----------------------------------------------------------~~~------------------- 557 (794)
+..
T Consensus 508 ~~~~~~~~~~~~PvD~yi~G~dhailHLlyaRf~~~~l~~~~~~~~~~Pfk~l~~~G~Vl~~~~~~~G~~~~~~~~~~~~ 587 (842)
T TIGR00396 508 QPFDKEKAEYWLPVDLYIGGAEHAILHLLYARFWHKFLYDIGYVSTKEPFKKLINQGMVLGFYYPPNGKSPPDELTERDE 587 (842)
T ss_pred CCcChHHHhccCCCcEeeccHHHHHHHHHHHHHHHHHHHhccccCCCccHHHHhccceEEeeeecCCCCccChhhhcccc
Confidence 011
Q ss_pred ----------------HHHhhhcCeeecCCCCCCCCCCchhhhhhhh-cCCCCceecChHHHHHHHHHHHHHHhHHHHHH
Q 003799 558 ----------------AAMDAIGQVKWVPPQEAPGYGADVLRLWVSS-VDYTGDVMIGPQVLRQMSDIYRKLRGTLRYLL 620 (794)
Q Consensus 558 ----------------~~l~~i~~v~~~P~~~~~~yGaD~lRl~las-~~~~~Di~~s~~~l~~~~~~~~kl~Nt~rfll 620 (794)
||+++.+|+.. |.+++++||||++|||+++ +++..|++|+++.++++.++++||||++++++
T Consensus 588 ~~~~~~~~~~~~~~~~KMSKS~GN~v~-p~~ii~~ygaDalRl~~l~~~~~~~d~~~~~~~l~~~~~~l~kl~~~~~~~~ 666 (842)
T TIGR00396 588 KAKDKSGGELVVVGYEKMSKSKGNGID-PQEIVKKHGADALRLYIMFMGPIAASLEWNDSGLEGARRFLDRVWNLFYNIL 666 (842)
T ss_pred ccccccCCcccccchhhhhhcCCCcCC-HHHHHHHcCchHHHHHHHhcCCcCCCCccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555443 4445568999999999985 58899999999999999999999999999988
Q ss_pred hcccCCCCCCCcCCCCCChhhHHHHHHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHhhhHHHHHhhccccccCCCChH
Q 003799 621 GNLHDWRVGNSISYDDLPMIDQYALFQLENIVKNIRESYESYQ-FFKIFQIIQRFIIVDLSNFYFDVAKDRLYTGGTTSF 699 (794)
Q Consensus 621 ~nl~~~~~~~~~~~~~l~~~D~~il~~l~~lv~~v~~~~e~y~-f~~ai~~l~~f~~~~lsn~Yle~~K~rly~~~~d~~ 699 (794)
+++.++. .++...+..+|+|+++++++++++++++|++|+ |++|++++|+|++ +|++ |. +
T Consensus 667 ~~~~~~~---~~~~~~l~~~d~~il~~l~~~i~~v~~~~e~y~~fn~ai~~l~~f~n-~L~~-~~---~----------- 727 (842)
T TIGR00396 667 GELDGKT---YLTPTILEEAQKELRRDVHKFLKKVTEDLEKLESFNTAISAMMILLN-ALYK-AK---K----------- 727 (842)
T ss_pred hhhcccc---cCCcccCCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH-HHHh-hh---h-----------
Confidence 8876532 112234567999999999999999999999998 9999999999986 4654 11 0
Q ss_pred hHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhCCCCccccCCCCCCceeecCCCCCCcccCC
Q 003799 700 TRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAAEFVFESKWPVLDEKWRT 763 (794)
Q Consensus 700 ~r~s~~~vL~~iL~~l~~lLaP~~P~~aEEiw~~L~~~~~~~~~~~~~sV~~~~wP~~~e~~~~ 763 (794)
..+|+++|+.+++|||||+||+|||||+.|+.. .+||+.++||++++..+.
T Consensus 728 -----~~~l~~~l~~ll~lLaPf~PhiaEElW~~l~~~--------~~sv~~~~wP~~d~~~l~ 778 (842)
T TIGR00396 728 -----DALYLEYLKGFLTVLSPFAPHLAEELWEKLGSE--------PFIIKQAKWPKVDETALV 778 (842)
T ss_pred -----HHHHHHHHHHHHHHHhhhhhHHHHHHHHHhCCC--------CCeeecCCCCCCCHHHHh
Confidence 026889999999999999999999999999742 248999999999876544
No 26
>PLN02563 aminoacyl-tRNA ligase
Probab=100.00 E-value=5.1e-93 Score=857.24 Aligned_cols=566 Identities=22% Similarity=0.335 Sum_probs=435.6
Q ss_pred cCCCCCCcccccHHHHHHHhhcCcchhccc-cCCCCcEEEEcCCCCCCCc-ccchHHHhHHHHHHHHHHHHhCCCeeEEe
Q 003799 116 TFGMRANALVREPEIHKLWDDHQVFLRVAD-KNDGENFVLHDGPPYANGN-LHMGHALNKILKDIINRYKLLQNYKVRYV 193 (794)
Q Consensus 116 ~f~~r~n~~~~E~~~~~~W~~~~~~~~~~~-~~~~~~f~i~~~pPy~nG~-lHiGHa~~~il~Dii~R~~r~~G~~V~~~ 193 (794)
.++..+|+..+|++||++|+++++|+.... +.++++|+++++||||||. |||||++|++++|+++||+||+||+|+|+
T Consensus 75 ~~~~~y~~~~iE~kwq~~W~e~~~f~~~~~~~~~k~k~~v~~~~PYpnG~~lHiGH~~~y~~~DviaRy~Rm~G~~Vl~~ 154 (963)
T PLN02563 75 AAKRAYPFHEIEPKWQRYWEENRTFRTPDDVDTSKPKFYVLDMFPYPSGAGLHVGHPEGYTATDILARYKRMQGYNVLHP 154 (963)
T ss_pred ccCCCCCHHHHHHHHHHHHHhCCCccccccccCCCCCEEEEeCCCCCCCcccchhhHHHHHHHHHHHHHHHhcCCeeccc
Confidence 456778999999999999999999997542 3467889999999999997 99999999999999999999999999999
Q ss_pred ccccCCCchHHHHHHhhchhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCCccccCChHHHHHHHHHHHH
Q 003799 194 PGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKAAKFAKATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQ 273 (794)
Q Consensus 194 ~G~D~hGlpie~~~~k~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~lGi~~dwd~~~~T~d~~~~~~v~~~f~~ 273 (794)
+||||||+|||..+.+ .+..|. +++.++++.++++|++||++.||+++|+|+||.|.+.++++|.+
T Consensus 155 ~G~D~~GlPiE~~a~~-------~g~~p~-------~~~~~~i~~~~~q~~~lG~s~DW~r~~~T~dp~y~~~~q~~F~~ 220 (963)
T PLN02563 155 MGWDAFGLPAEQYAIE-------TGTHPK-------ITTLKNIARFRSQLKSLGFSYDWDREISTTEPEYYKWTQWIFLQ 220 (963)
T ss_pred ccccccCcHHHHHHHH-------cCCChH-------HhHHHHHHHHHHHHHHhCcEeeCCCCeecCCHHHHHHHHHHHHH
Confidence 9999999999998763 345554 45899999999999999999999999999999999999999999
Q ss_pred HHHcCCeeecccCceeccCCCccccccccccCCcccccccc--e-------eEEeccCCCCccccccc------------
Q 003799 274 MSLQGYIYRGKKPVHWSPSSRTALAEAELEYPEGHVSRSIY--A-------VFRMVSAPPSTSGLLNE------------ 332 (794)
Q Consensus 274 L~~kGlIy~~~~~v~w~~~~~t~Lae~Evey~e~~~~~~~~--v-------~F~l~~~~~~~~~~l~~------------ 332 (794)
|+++||||++.++|+|||.|+|+||++||++ +.|..|.. + +|+++.+++.+.+.++.
T Consensus 221 L~~~GliY~~~~~v~wcp~~~T~La~~Ev~~--~~~~~~~~~~~~~~~~q~f~~it~ya~~L~~~l~~~~wp~~v~~~q~ 298 (963)
T PLN02563 221 LLKRGLAYQAEVPVNWCPALGTVLANEEVVD--GLSERGGHPVIRKPMRQWMLKITAYADRLLEDLDDLDWPESIKEMQR 298 (963)
T ss_pred HHHCCCEEeeeeeeeecCCcCCCCCHHHhhc--CCCcCCCCceEEEecceeEEecchhHHHHHHhhhhcCCCHHHHHHHH
Confidence 9999999999999999999999999999986 33444432 2 35555554443332210
Q ss_pred ------------c-c-------CCccceeccCCCCccccccEEEECCCcceeeeeecccccCCCCCcCCCCCCCCCcccC
Q 003799 333 ------------F-L-------PDLGLAVWTTTPWTVPANAAVAVNAKLQYAVVEIQSLLEGDSAAPANKKSRPGNVLKD 392 (794)
Q Consensus 333 ------------~-~-------~~~~l~iwTT~PwTi~~n~av~v~p~~~Y~~v~~~~~~~~~s~~~~~~~~~~g~~~~~ 392 (794)
+ + .+.+++|||||||||+||++|+|||++.|+.+.+... . +
T Consensus 299 nwiG~s~g~~i~F~~~~~~~~~~~~~l~V~TTrPeTl~g~t~iav~p~~~yv~~~~~~~----------~---------~ 359 (963)
T PLN02563 299 NWIGRSEGAELDFSVLDGEGKERDEKITVYTTRPDTLFGATYLVVAPEHPLLSSLTTAE----------Q---------K 359 (963)
T ss_pred HhccccceEEEEEEecCccccCCCCEEEEEeCCChHHhhccEEEECCCChhhHhhhccc----------c---------h
Confidence 1 0 1357999999999999999999999999985432110 0 0
Q ss_pred CcceEeeecccchHHHHHhcCCceEEEeeeccCcccCCeeecCCCCCcccEEeccCcccccCCCCceeecCCCChhhHHH
Q 003799 393 QKKVFIIVASDLVPTLEAKWGTKLVIKKTLAGSDLENCRYVHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVT 472 (794)
Q Consensus 393 ~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~G~~L~g~~~~~Pl~~~~~pvvi~~~~V~~~~GTG~Vh~aPaHg~~D~~~ 472 (794)
..-+.++........+... .....++..+.|+++.||++++++||| .++||++++|||+||+|||||++||++
T Consensus 360 ~~v~~y~~~~~~~~~~~~~------~~~~~k~g~~~g~~~~~P~~~~~iPI~-~ad~V~~~~GTGaVm~~PaHd~~D~~~ 432 (963)
T PLN02563 360 EAVEEYVDAASRKSDLERT------ELQKEKTGVFTGSYAINPATGEAIPIW-VADYVLGSYGTGAIMAVPAHDTRDFEF 432 (963)
T ss_pred HHHHHHHHHHhchhHHhhh------hccceecccccCcEEeccCCCCeeEEE-EecccCCCCCCCeEEEcCCCCHHHHHH
Confidence 0001122222222222110 112345667899999999999999995 599999999999999999999999999
Q ss_pred HHHhCCCccccCC---CC-----Cccccc-----cCC----CCCccccccchHHHHHHHHhcCCccccccc--------c
Q 003799 473 SLKYGLPILSPVD---DE-----GKFTEE-----AGK----FSGLDVLGDGNVAVVKYLDEQMSLIMEEPY--------E 527 (794)
Q Consensus 473 ~~~~gl~i~~~vd---~~-----G~~~~~-----~~~----~~G~~v~~ea~~~ii~~L~~~g~l~~~~~~--------~ 527 (794)
+++||||++++|+ ++ |.|+.+ ++. |.|+.+. +|+++|++.|++.|.+.+...| +
T Consensus 433 a~k~~Lpi~~vI~~~d~~~~~~~~~y~~~G~l~ns~~~~~~~~Gl~~~-eA~~~Ii~~L~~~g~~~~~v~y~lrDW~ISR 511 (963)
T PLN02563 433 AQKFDLPIKWVVKPADGNEDDAEKAYTGEGVIVNSSSSGLDINGLSSK-EAAKKVIEWLEETGNGKKKVNYKLRDWLFAR 511 (963)
T ss_pred HHHcCCCceeeeccCccccccccccccCceeEecCCCcccccCCcCHH-HHHHHHHHHHHhCCCCCCeeEecCCCceEee
Confidence 9999999999984 22 455543 233 9999995 9999999999999998776666 5
Q ss_pred cccccccCCCCcEEEccc---------------------------------------------------------Ccccc
Q 003799 528 HKYPYDWRTKKPTIFRAT---------------------------------------------------------EQWFA 550 (794)
Q Consensus 528 h~yp~~WRt~~pii~r~t---------------------------------------------------------~QWfi 550 (794)
++| |+|+.|++|+.. |+||-
T Consensus 512 QRy---WG~PIPi~~c~~cg~~v~v~e~~Lpv~lpe~~~~~~~~~g~~pl~~~~~~~~~~~p~cg~~~~RetDtmDtw~~ 588 (963)
T PLN02563 512 QRY---WGEPIPVVFLEDSGEPVPVPESDLPLTLPELDDFTPTGTGEPPLAKAVSWVNTVDPSSGKPARRETNTMPQWAG 588 (963)
T ss_pred ecc---cCCceEEEEEcCCCcEEecchHhCcccchhhhhcccCCCCCCchhcchhhhcCcCcCCCCCcEECCCcCCchhh
Confidence 777 888888887531 12211
Q ss_pred chhh---------------------------------------------------------------------HHH----
Q 003799 551 SVEG---------------------------------------------------------------------FRQ---- 557 (794)
Q Consensus 551 ~~~~---------------------------------------------------------------------~~~---- 557 (794)
+... +..
T Consensus 589 Sswy~~r~~~p~~~~~~~~~~~~~~w~PvD~yigG~dhailHLlY~Rfw~~~l~~~g~~~~~ePfk~ll~qGmVl~~~~~ 668 (963)
T PLN02563 589 SCWYYLRFMDPKNSNALVDKEKEKYWMPVDLYVGGAEHAVLHLLYARFWHKVLYDIGVVSTKEPFQCLVNQGMILGEVEY 668 (963)
T ss_pred ccHHHHHHhCCCccccccCHHHHhCcCCCcEeeccHHHHhhHhHHHHHHHHHHHHhhccCCcccHHHHhccceeecCccc
Confidence 1000 000
Q ss_pred ------------------------------------------------------HHHhhhcCeeecCCCCCCCCCCchhh
Q 003799 558 ------------------------------------------------------AAMDAIGQVKWVPPQEAPGYGADVLR 583 (794)
Q Consensus 558 ------------------------------------------------------~~l~~i~~v~~~P~~~~~~yGaD~lR 583 (794)
||+|+.+|+.. |..++++||||++|
T Consensus 669 ~~~~d~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eKMSKSKGNvVd-P~eiI~kYGADaLR 747 (963)
T PLN02563 669 TAFKDSDGEYVSADTADRLGELQQEKIPEEKVIKSGDSFVLKDDPSIRLIARAHKMSKSRGNVVN-PDDVVSEYGADSLR 747 (963)
T ss_pred cceecCCCcCcccccccccccccccccccccccccccccccccCCcccccccccccccccCCcCC-HHHHHHHcCcHHHH
Confidence 44444444443 44455689999999
Q ss_pred hhhhhcCC-CCceecChHHHHHHHHHHHHHHhHHHHHHhcccCCCCCCCcCCCCCChhhHHHHHHHHHHHHHHHHHHhcc
Q 003799 584 LWVSSVDY-TGDVMIGPQVLRQMSDIYRKLRGTLRYLLGNLHDWRVGNSISYDDLPMIDQYALFQLENIVKNIRESYESY 662 (794)
Q Consensus 584 l~las~~~-~~Di~~s~~~l~~~~~~~~kl~Nt~rfll~nl~~~~~~~~~~~~~l~~~D~~il~~l~~lv~~v~~~~e~y 662 (794)
||++++.+ .+|..|+++.+.++.++++|+||++.....+...+.+. ..+ .....|+|++++++.++++++++|++|
T Consensus 748 l~ll~~ap~~dd~~w~~~~V~g~~rfL~rlwn~~~~~~~~~~~~~~~-~~~--~~~~~d~~ll~kl~~~ikkVte~~e~y 824 (963)
T PLN02563 748 LYEMFMGPLRDSKTWSTSGVEGVHRFLGRTWRLVVGAPLPDGSFRDG-TVV--TDEEPSLEQLRLLHKCIAKVTEEIEST 824 (963)
T ss_pred HHHHhCCCcccccccCHHHHHHHHHHHHHHHHHHHHhhhcccccCcc-ccc--cCCcchHHHHHHHHHHHHHHHHHHHcC
Confidence 99987655 56788999999999999999999876432111112111 111 123579999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHhhhHHHHHhhccccccCCCChHhHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhCCCCccccC
Q 003799 663 QFFKIFQIIQRFIIVDLSNFYFDVAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLED 742 (794)
Q Consensus 663 ~f~~ai~~l~~f~~~~lsn~Yle~~K~rly~~~~d~~~r~s~~~vL~~iL~~l~~lLaP~~P~~aEEiw~~L~~~~~~~~ 742 (794)
+|++|++++|+|++. ++++ + .++.++++.+++|||||+||+|||||++|+..
T Consensus 825 ~FntAi~~lmef~n~-l~~~--------------~--------~~~~~~l~~ll~LLaPf~PhiaEELW~~Lg~~----- 876 (963)
T PLN02563 825 RFNTAISAMMEFTNA-AYKW--------------D--------KVPREAIEPFVLLLSPYAPHLAEELWFRLGHS----- 876 (963)
T ss_pred CHHHHHHHHHHHHHH-HhCc--------------h--------HHHHHHHHHHHHHHHhhhhhHHHHHHHHcCCC-----
Confidence 999999999999864 4321 0 03567899999999999999999999999742
Q ss_pred CCCCCceeecCCCCCCcccCC
Q 003799 743 GSAAEFVFESKWPVLDEKWRT 763 (794)
Q Consensus 743 ~~~~~sV~~~~wP~~~e~~~~ 763 (794)
+||+.++||++++.++.
T Consensus 877 ----~sv~~~~WP~~d~~~l~ 893 (963)
T PLN02563 877 ----NSLAYEPWPEANPSYLV 893 (963)
T ss_pred ----CeeeeCCCCCCCHHHhh
Confidence 68999999999977654
No 27
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.5e-75 Score=683.04 Aligned_cols=608 Identities=25% Similarity=0.343 Sum_probs=434.2
Q ss_pred CCCCcccccHHHHHHHhhcCcchhccccCCCCcEEEEcCCCCCCCcccchHHHhHHHHHHHHHHHHhCCCeeEEeccccC
Q 003799 119 MRANALVREPEIHKLWDDHQVFLRVADKNDGENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDC 198 (794)
Q Consensus 119 ~r~n~~~~E~~~~~~W~~~~~~~~~~~~~~~~~f~i~~~pPy~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G~D~ 198 (794)
+++++..+|++||++|++.++|+...+....+||+++++.|||||.|||||++|+++.||++||+||+||+|++++|||+
T Consensus 3 ~~y~~~~IE~KWQ~~W~e~~~Fe~~~d~~~~~Kfyvl~mfPYpSG~LHvGH~r~Yti~Dv~aRykRm~GyNVL~PMGwda 82 (814)
T COG0495 3 SRYNPREIEEKWQKRWEEAKVFEADEDSDKPEKFYVLVMFPYPSGALHVGHVRNYTIGDVIARYKRMQGYNVLHPMGWDA 82 (814)
T ss_pred cccchHHHHHHHHHHHHhcCCcccCCCCCCCCceEEEeCCCCCCCCcccCccccccHHHHHHHHHHhcCCeecccCcccc
Confidence 45677789999999999999999865433236999999999999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHhhchhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCCccccCChHHHHHHHHHHHHHHHcC
Q 003799 199 HGLPIELKVLQSLDEDAKKDLTPSKLRAKAAKFAKATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQG 278 (794)
Q Consensus 199 hGlpie~~~~k~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~lGi~~dwd~~~~T~d~~~~~~v~~~f~~L~~kG 278 (794)
.|+|+|..|+ +.+.+|.. |+..+++.+++||++||.+.||++.+.|+||+|.+++||+|.+|+++|
T Consensus 83 fGlPae~~A~-------~~~~~P~~-------wt~~ni~~~k~qlk~lG~siDW~Ref~T~Dp~Yyk~~QW~F~kL~ekG 148 (814)
T COG0495 83 FGLPAENAAI-------KIGTDPAK-------WTYYNIAYMKKQLKSLGFSIDWRREFATCDPEYYKWIQWQFLKLYEKG 148 (814)
T ss_pred cCchHHHHHH-------HhCCChHH-------HHHHHHHHHHHHHHHhCCccccccceecCCccHHHHHHHHHHHHHHCC
Confidence 9999999998 44557755 599999999999999999999999999999999999999999999999
Q ss_pred CeeecccCceeccCCCccccccccccCCcccccccc---------eeEEeccCCCCcccccccccCCccceeccCCCCcc
Q 003799 279 YIYRGKKPVHWSPSSRTALAEAELEYPEGHVSRSIY---------AVFRMVSAPPSTSGLLNEFLPDLGLAVWTTTPWTV 349 (794)
Q Consensus 279 lIy~~~~~v~w~~~~~t~Lae~Evey~e~~~~~~~~---------v~F~l~~~~~~~~~~l~~~~~~~~l~iwTT~PwTi 349 (794)
|||+++.+|+|||.|+|+|+++||. +|.|++|.+ ++|+++++.+.+.+.+. ...|.+|+|+
T Consensus 149 L~y~~~~~VnwcP~d~tvlaneqv~--~g~~~r~~~~V~~kel~qw~~kit~yae~ll~~l~--------~l~~~wPE~V 218 (814)
T COG0495 149 LAYRKEAPVNWCPVDGTVLANEQVI--DGGCWRCGEPVEIKELTQWFFKITDYADELLDDLD--------KLATLWPETV 218 (814)
T ss_pred CEEeccccceeCCCcCCccccceee--cCCcccCCCceeEeeeEEEEEEechhHHHHHhhhh--------hhccCCchhH
Confidence 9999999999999999999999998 566777764 36888887654432221 2234466666
Q ss_pred ccccEEEECCCcceeeeeeccccc-CCCC--CcCCCCCCCCCcc----cCCc-ceEeeecc--cchHHHHHh-cCCc--e
Q 003799 350 PANAAVAVNAKLQYAVVEIQSLLE-GDSA--APANKKSRPGNVL----KDQK-KVFIIVAS--DLVPTLEAK-WGTK--L 416 (794)
Q Consensus 350 ~~n~av~v~p~~~Y~~v~~~~~~~-~~s~--~~~~~~~~~g~~~----~~~~-~~~~iv~~--~~~~~~~~~-~~~~--~ 416 (794)
.+-|..||+|+..|.+.....+.. +.+. -....-..+|+.. |+.+ .+.++... .++..+... .+.. .
T Consensus 219 k~mq~nWIg~s~g~~v~f~~~~~~~~~~~~vfttr~dt~~gvt~~~~a~~h~lv~~~~~~~~~~~~a~fv~~~~~~~~~~ 298 (814)
T COG0495 219 KGMQRNWIGPSEGYEVAFVVDGEEEIVSIEVFTTRPDTLFGVTYVVLAPEHPLVGKLVTNPQTPLVAEFVDECKGTGVVE 298 (814)
T ss_pred HHHHHcCcCCCCCeEEEEecCCcccceeeeeeeccCccccCeEEEEEeCCchHHHHHhcCccchhHHHHHHHhcCCCcee
Confidence 666666666666665554321110 0000 0000001112111 0000 00000000 122222221 1111 1
Q ss_pred EE--EeeeccCcccCCeeecCCCCCcccEEeccCcccccCCCCceeecCCCChhhHHHHHHhCCCccccCCCC-------
Q 003799 417 VI--KKTLAGSDLENCRYVHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPILSPVDDE------- 487 (794)
Q Consensus 417 ~~--~~~~~G~~L~g~~~~~Pl~~~~~pvvi~~~~V~~~~GTG~Vh~aPaHg~~D~~~~~~~gl~i~~~vd~~------- 487 (794)
.+ ....+|-.+ |.++.||+++..+|||+ ++||....|||+||.+|+|+..||+++.+|++|+..+|...
T Consensus 299 ~~~~~~~k~gv~~-g~~a~~p~~~e~iPi~~-a~~vl~~ygtgavm~vpahd~rd~efA~~y~l~i~~vi~~~~~~~~~~ 376 (814)
T COG0495 299 SVPAHAEKDGVFL-GGYAINPVNGEKIPVWI-ANYVLMEYGTGAVMGVPAHDERDLEFATKYKLPIKKVIMPEGTVGKKV 376 (814)
T ss_pred eeeccCCCcceec-cccccCCCCCCcCCEEE-eCcccccccccceecCCCCCchhhHHHHhcCCCeEEEEecCCCcccce
Confidence 11 123455543 68899999999999976 89999999999999999999999999999999998777433
Q ss_pred ----CccccccCCCCCccccccchHHHHHHHHhcCCccccccc--------ccccccccCCCCcEEEcc-----------
Q 003799 488 ----GKFTEEAGKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPY--------EHKYPYDWRTKKPTIFRA----------- 544 (794)
Q Consensus 488 ----G~~~~~~~~~~G~~v~~ea~~~ii~~L~~~g~l~~~~~~--------~h~yp~~WRt~~pii~r~----------- 544 (794)
|.+. +++.+.|+... ++...+...|.+.+.......| +++| |.++.|+|++-
T Consensus 377 ~~~~g~li-nS~~~~gl~~e-~a~~~~~~~l~~~~~~q~~v~Y~lrdW~~srqRy---wg~pipii~~e~~~~~~~~~d~ 451 (814)
T COG0495 377 YEGEGVLI-NSGGLDGLDYE-EAKVKIRCGLVKRGLGQWFVNYRLRDWLKSRQRY---WGEPIPIIHCEDCGVVPVPEDW 451 (814)
T ss_pred eccCceEe-ccccccCcchh-HHHHHHHHhHHHhcCCceEEecccchHHHHHHHH---hCCCcceeEcccCCcccCchHh
Confidence 3422 34689999984 7788888999988877777777 3556 88888888743
Q ss_pred ----------------------------------------cCccccchhh--------HH-HHHHhhhcCeeecCCC---
Q 003799 545 ----------------------------------------TEQWFASVEG--------FR-QAAMDAIGQVKWVPPQ--- 572 (794)
Q Consensus 545 ----------------------------------------t~QWfi~~~~--------~~-~~~l~~i~~v~~~P~~--- 572 (794)
.+||.-+..- +. +.+...-.--.|+|.+
T Consensus 452 Lpv~lp~~~~~~gt~~pL~~~~~W~~~s~~~s~~~ret~Tm~~~~~sswy~~r~~d~~~~~~~~~~~e~~~yW~PVD~yi 531 (814)
T COG0495 452 LPVKLPERVRGLGTGSPLPWDEEWVIESLPDSTAYRETDTMDTFIDSSWYYLRFFDPIFLGELPFDREEFNYWYPVDLYI 531 (814)
T ss_pred cCcccccccccCCCCCCCCCCcceEEEecCCCceeeehhhhhHhcccccccHhhcChhcCccchhcHHHHhcccChheee
Confidence 1222222210 00 0000000113577876
Q ss_pred -------------------------------------------------------------CCCCCCCchhhhhhhhc-C
Q 003799 573 -------------------------------------------------------------EAPGYGADVLRLWVSSV-D 590 (794)
Q Consensus 573 -------------------------------------------------------------~~~~yGaD~lRl~las~-~ 590 (794)
++++||||++|+|++++ +
T Consensus 532 gG~ehavlHLly~rF~Hkal~d~g~~p~~epf~~L~~qGmVl~~~g~KMSKSKgN~v~p~~~i~~yGADt~Rl~~m~~ap 611 (814)
T COG0495 532 GGIEHAVLHLLYFRFFHKALFDEGLVPKDEPFKKLITQGMVLGEEGEKMSKSKGNVVDPEEAVEKYGADTVRLYIMFAAP 611 (814)
T ss_pred cchhHHHHHHHHHHHHHHHhcccCcCCCccchhhhhccceEEecCCCccccccCCCCCHHHHHHHhCchHHHHHHHhhCC
Confidence 33589999999999865 6
Q ss_pred CCCceecChHHHHHHHHHHHHHHhHHHHHHhcccCCCCCCCcCCCCCChhhHHHHHHHHHHHHHHHHHHhc-ccHHHHHH
Q 003799 591 YTGDVMIGPQVLRQMSDIYRKLRGTLRYLLGNLHDWRVGNSISYDDLPMIDQYALFQLENIVKNIRESYES-YQFFKIFQ 669 (794)
Q Consensus 591 ~~~Di~~s~~~l~~~~~~~~kl~Nt~rfll~nl~~~~~~~~~~~~~l~~~D~~il~~l~~lv~~v~~~~e~-y~f~~ai~ 669 (794)
+.+|++|+++.++++.++++|+|+.+.-..+.... ....+....|+|++++ +++.+++.++. +.|+.|+.
T Consensus 612 ~~~d~~W~e~gv~g~~rfL~r~~~l~~~~~~~~~~------~~~~~~~~~~~~~~h~---~~~~v~~~~e~~~~~nt~i~ 682 (814)
T COG0495 612 PEQDLEWSESGVEGARRFLQRVWNLVKEHLEKLVE------ELTKEQGKEDRWLLHR---TIKKVTEDFEARQTFNTAIA 682 (814)
T ss_pred hhhCCCCChhhhHHHHHHHHHHHHHHHHhhhcccc------cccchhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999987654433210 0001111457776655 55566666666 99999999
Q ss_pred HHHHHHHHhhhHHHHHhhccccccCCCChHhHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhCCCCccccCCCCCCce
Q 003799 670 IIQRFIIVDLSNFYFDVAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAAEFV 749 (794)
Q Consensus 670 ~l~~f~~~~lsn~Yle~~K~rly~~~~d~~~r~s~~~vL~~iL~~l~~lLaP~~P~~aEEiw~~L~~~~~~~~~~~~~sV 749 (794)
.+|+|++. -.+|....... + .+|.++++.+++||+||+||+|||+|+.|+.. ++|
T Consensus 683 ~~m~l~N~--l~~~~~~~~~~-----------~---~~l~~~l~~~v~lLaP~aPH~aEElW~~lg~~---------~~v 737 (814)
T COG0495 683 ALMELLNA--LRKYLRRTEGD-----------R---KVLREALETWVRLLAPFAPHIAEELWEELGNE---------GFV 737 (814)
T ss_pred HHHHHHHH--HHHHHhcccch-----------H---HHHHHHHHHHHHHhcccccHHHHHHHHHhcCC---------Cce
Confidence 99999964 45677654321 1 46889999999999999999999999999843 489
Q ss_pred eecCCCCCCcccCCCChh--------------------HHHHHHHHHHHHHHHHHHHhhcCC
Q 003799 750 FESKWPVLDEKWRTFPVG--------------------EIYFWGKILEVIVVVTYLNETEGF 791 (794)
Q Consensus 750 ~~~~wP~~~e~~~~~~~~--------------------~~~~~~~i~~lR~~v~~~~e~~~~ 791 (794)
+.++||++++.....+.. .+..+..+.-.-+.|.+.++....
T Consensus 738 ~~~~wP~~de~~l~~~~~~~~vqvngk~r~~~~~~~~a~~~~~~~~~~~~~~v~~~l~~~~~ 799 (814)
T COG0495 738 SNAPWPEPDEEALVEDEVEIVVQVNGKVRAREVVAADADEEKVKEIALADEEVQKFLQGKTI 799 (814)
T ss_pred eeCCCCCCChhhccccceEEEEEEeeEEEEEEEEcCCCCHHHHHHHHhccHHHHHHHcCCCc
Confidence 999999999987664320 123344444445777777776543
No 28
>KOG0435 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.9e-65 Score=564.02 Aligned_cols=551 Identities=21% Similarity=0.345 Sum_probs=409.4
Q ss_pred cccHHHHHHHhhcCcchhccccCCCCcEEEEcCCCCCCCcccchHHHhHHHHHHHHHHHHhCCCeeEEeccccCCCchHH
Q 003799 125 VREPEIHKLWDDHQVFLRVADKNDGENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIE 204 (794)
Q Consensus 125 ~~E~~~~~~W~~~~~~~~~~~~~~~~~f~i~~~pPy~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G~D~hGlpie 204 (794)
.+|+.|+++|.+...+.+.. ..+++||+ .+..|||+|.|||||.+.|++.|+++||+||+||+|..++|||..|||.|
T Consensus 34 ~iEk~W~~~~~~~~~~~~~~-d~sk~KYi-LsMFPYPSG~LHiGHvRVYTIsD~laRf~rm~GynVihPMGWDaFGLPAE 111 (876)
T KOG0435|consen 34 MIEKHWKQYLKDGFPFSKDS-DKSKKKYI-LSMFPYPSGALHIGHVRVYTISDILARFYRMKGYNVIHPMGWDAFGLPAE 111 (876)
T ss_pred HHHHHHHHHHhcCCcccccc-ccCCCceE-EEecCCCCCcccccceEEEEehHHHHHHHHhcCceeecCCcccccCCchh
Confidence 57899999999875555433 33566755 55799999999999999999999999999999999999999999999999
Q ss_pred HHHHhhchhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCCccccCChHHHHHHHHHHHHHHHcCCeeecc
Q 003799 205 LKVLQSLDEDAKKDLTPSKLRAKAAKFAKATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGK 284 (794)
Q Consensus 205 ~~~~k~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~lGi~~dwd~~~~T~d~~~~~~v~~~f~~L~~kGlIy~~~ 284 (794)
..|. ..+++|. .|...+++.+++|+++||++.|||++..|++|+|.++.||+|.+|+++||+|+.+
T Consensus 112 NAAi-------ergv~P~-------sWT~~NI~~Mk~Ql~~lg~~FDWdrEiSTC~PdYYKWTQwiFlkLfe~GLAYq~E 177 (876)
T KOG0435|consen 112 NAAI-------ERGVHPA-------SWTINNIAKMKQQLKSLGISFDWDREISTCEPDYYKWTQWIFLKLFEKGLAYQAE 177 (876)
T ss_pred hHHH-------hcCCCch-------hhhHHHHHHHHHHHHHcCcccccccccccCCcchhHHHHHHHHHHHHhhhhhccc
Confidence 9987 5678884 4699999999999999999999999999999999999999999999999999999
Q ss_pred cCceeccCCCccccccccccCCcccccccce---------eEEeccCCCCcccccccc----------------------
Q 003799 285 KPVHWSPSSRTALAEAELEYPEGHVSRSIYA---------VFRMVSAPPSTSGLLNEF---------------------- 333 (794)
Q Consensus 285 ~~v~w~~~~~t~Lae~Evey~e~~~~~~~~v---------~F~l~~~~~~~~~~l~~~---------------------- 333 (794)
-+|+|||.++|+||++||+- +|+.++|... +.+++.+++.+.+.|+.+
T Consensus 178 a~VNWDPvD~TVLAnEQVD~-~G~SWRSGA~VEkK~LrQWfikttaYAk~L~d~L~~L~~W~~vk~mQrnWIG~~~G~el 256 (876)
T KOG0435|consen 178 AEVNWDPVDKTVLANEQVDA-DGCSWRSGAKVEKKKLRQWFIKTTAYAKRLLDGLETLPEWPEVKDMQRNWIGRCDGAEL 256 (876)
T ss_pred cccccCcccceeecchhhcc-cCccccccchhhHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhHHHHHHhhcccccceEE
Confidence 99999999999999999975 6777777653 234444444433322211
Q ss_pred --------cCCccceeccCCCCccccccEEEECCCcceeeeeecccccCCCCCcCCCCCCCCCcccCCcceEeeecccch
Q 003799 334 --------LPDLGLAVWTTTPWTVPANAAVAVNAKLQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFIIVASDLV 405 (794)
Q Consensus 334 --------~~~~~l~iwTT~PwTi~~n~av~v~p~~~Y~~v~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~iv~~~~~ 405 (794)
..+..|.+|||+|+||++.+.+++.|++.-+.... ++.
T Consensus 257 ~F~ll~~~~~de~ltv~Tt~Petl~~~~f~vl~~~H~L~~~~~----------------------------------~lk 302 (876)
T KOG0435|consen 257 MFPLLDDGSNDEILTVYTTRPETLFGASFLVLAPSHSLLDKDS----------------------------------SLK 302 (876)
T ss_pred EEEeccCCCCCceEEEEecCchhhccceEEEEcCCchhhhhhc----------------------------------hHH
Confidence 12367899999999999999999999987432111 011
Q ss_pred HHHHHhcCCceEEEeeeccCcccCCeeecCCCCCcccEEeccCcccccCCCCceeecCCCChhhHHHHHHhCCCcccc--
Q 003799 406 PTLEAKWGTKLVIKKTLAGSDLENCRYVHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPILSP-- 483 (794)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~G~~L~g~~~~~Pl~~~~~pvvi~~~~V~~~~GTG~Vh~aPaHg~~D~~~~~~~gl~i~~~-- 483 (794)
+.+... .+.. +|- +.++.+.||++++.+|||+ ++||..-.|||+|+.+|+|+.+|++++++-|+..+..
T Consensus 303 efl~~~-----~l~~--Kg~-~lp~~A~Np~tg~~iPv~~-a~~v~~~~gt~a~m~~P~hd~rD~ela~~~~~~~~~~~~ 373 (876)
T KOG0435|consen 303 EFLSKS-----DLPQ--KGV-QLPCQAKNPVTGRAIPVVV-ADYVLDPYGTGAVMGAPGHDQRDKELAQKIGIKWIICIE 373 (876)
T ss_pred Hhhhhh-----hccc--cCc-ccceeeccCCCCceeeEEE-echhccCCCcceeeeccCcccchhHHHhcccceeEEEEe
Confidence 111100 0000 232 3468899999999999966 8999999999999999999999999999966543322
Q ss_pred --CCCCCccccccCCCCCccccccchHHHHHHHHhcCCccccccc--------ccccccccCCCCcEEEcc---------
Q 003799 484 --VDDEGKFTEEAGKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPY--------EHKYPYDWRTKKPTIFRA--------- 544 (794)
Q Consensus 484 --vd~~G~~~~~~~~~~G~~v~~ea~~~ii~~L~~~g~l~~~~~~--------~h~yp~~WRt~~pii~r~--------- 544 (794)
.+++|+-+.. +.+.|+...++|..+|++++++.|.......| +++| |+|+.|||.+-
T Consensus 374 ~~f~~~~K~~~~-~~~tn~~~~q~a~~~l~~~~~~~g~g~~~vs~kLkDWLiSRQRy---WGTPIPivhc~~cG~vpVpe 449 (876)
T KOG0435|consen 374 VIFTNFGKKNEQ-KAFTNLDIRQNAALKLFQFAERKGVGGYVVSYKLKDWLISRQRY---WGTPIPIVHCDDCGAVPVPE 449 (876)
T ss_pred eeecchhhhhcc-ccccchhHHHHHHHHHHHHHHhcCCCcceecchhhhhhhhhhhc---cCCCcceEEcCCCCcccCcH
Confidence 2444544432 45678666567888999999999988887777 5889 99999999853
Q ss_pred --------------------------------------------cCccccchhh-H-------HHHHHhhhcCeeecCCC
Q 003799 545 --------------------------------------------TEQWFASVEG-F-------RQAAMDAIGQVKWVPPQ 572 (794)
Q Consensus 545 --------------------------------------------t~QWfi~~~~-~-------~~~~l~~i~~v~~~P~~ 572 (794)
+++|+.+... | .+...+.-...+|+|.+
T Consensus 450 s~LPV~LP~l~~~~~kG~Pls~~~e~vn~~cP~cg~pAkRETDTMDTFvDSsWYYlRylDpkN~e~~~d~a~a~k~MPVD 529 (876)
T KOG0435|consen 450 SELPVTLPELNDFTPKGPPLSKADEWVNVDCPRCGEPAKRETDTMDTFVDSSWYYLRYLDPKNPEEPFDKAKAKKNMPVD 529 (876)
T ss_pred HHCCcccccccccCCCCCcccchhhheeccCccCCCcccccccccchhhccceeeEeecCCCCcccccchhhhhccCcee
Confidence 1333332210 0 00001111123566665
Q ss_pred --------------------------------------------------------------------------------
Q 003799 573 -------------------------------------------------------------------------------- 572 (794)
Q Consensus 573 -------------------------------------------------------------------------------- 572 (794)
T Consensus 530 vYIGG~EHAvlHLlYaRF~~kFl~di~~~~t~EPF~~Li~QGmV~G~tf~~~~sG~yl~~~ev~~~nd~~~~~vlk~~~e 609 (876)
T KOG0435|consen 530 VYIGGKEHAVLHLLYARFIAKFLKDIGVVSTAEPFTKLITQGMVRGKTFRTKESGKYLGPEEVQQVNDHQNKFVLKNDKE 609 (876)
T ss_pred EEeccHHHHHHHHHHHHHHHHHHhhcCCCcCCCcHHHHHhhhcccceEEecCCCCccCCHHHhhhhcCCcceeEecCCCc
Confidence
Q ss_pred ---------------------CCCCCCCchhhhhhhh-cCCCCceecChHHHHHHHHHHHHHHhHHHHHHhcccCCCCCC
Q 003799 573 ---------------------EAPGYGADVLRLWVSS-VDYTGDVMIGPQVLRQMSDIYRKLRGTLRYLLGNLHDWRVGN 630 (794)
Q Consensus 573 ---------------------~~~~yGaD~lRl~las-~~~~~Di~~s~~~l~~~~~~~~kl~Nt~rfll~nl~~~~~~~ 630 (794)
++.+||+|++|++++. +.+.++++|++..+.++.+++.|+|++..-++..-++-.+.+
T Consensus 610 ~~v~t~eKMSKSK~NGVdP~~~v~~yG~D~tRl~ilf~ap~~~~~nW~es~i~Gi~rwl~riw~l~~~~~~ar~~g~~~d 689 (876)
T KOG0435|consen 610 VVVVTYEKMSKSKHNGVDPADVVLEYGVDTTRLYILFAAPPRDPINWNESAIPGIKRWLQRIWALVSQILQARDDGKAKD 689 (876)
T ss_pred ceeeeHHHhhhcccCCCCHHHHHHHhCchHHHHHHHhhCCcccccccccccchhHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 2348999999999875 577889999999999999999999998765544322211111
Q ss_pred -CcCCCCCChhhHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHhhhHHHHHhhccccccCCCChHhHHHHHHHH
Q 003799 631 -SISYDDLPMIDQYALFQLENIVKNIRESYES-YQFFKIFQIIQRFIIVDLSNFYFDVAKDRLYTGGTTSFTRRSCQTVL 708 (794)
Q Consensus 631 -~~~~~~l~~~D~~il~~l~~lv~~v~~~~e~-y~f~~ai~~l~~f~~~~lsn~Yle~~K~rly~~~~d~~~r~s~~~vL 708 (794)
....+.....++-+.+..|.+++.|+++||. +.++.|+..+|.|.+. |...+=... ... ...
T Consensus 690 ~~~~td~~dae~~kl~~~~n~fi~~vt~~~e~~~slNtaIS~~m~ltN~-l~~a~k~~~-----~h~----------~~~ 753 (876)
T KOG0435|consen 690 LKKLTDGFDAETRKLKETYNFFIKQVTEHYEVLFSLNTAISDMMGLTNA-LKKALKIVL-----VHS----------PEF 753 (876)
T ss_pred ccccccccchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH-HHHhhhhhh-----hcC----------hHH
Confidence 1112233566788999999999999999985 7799999999999864 543221110 000 124
Q ss_pred HHHHHHHHHHhccccchHHHHHHHhCCCCccccCCCCCCceeecCCCCCCcccCC
Q 003799 709 SAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAAEFVFESKWPVLDEKWRT 763 (794)
Q Consensus 709 ~~iL~~l~~lLaP~~P~~aEEiw~~L~~~~~~~~~~~~~sV~~~~wP~~~e~~~~ 763 (794)
..+|+.+++||+|++||+|+|+|..|+.. .+- +....||++++.+..
T Consensus 754 ~~al~~lv~mlaP~aPh~asE~Ws~l~~~-----~~~---~~~~~WP~vd~~~~~ 800 (876)
T KOG0435|consen 754 ERALEALVIMLAPFAPHVASELWSALAND-----LSW---VSDVKWPEVDPDYLI 800 (876)
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHhcc-----ccc---hhccCCccCChhhhc
Confidence 46788999999999999999999999742 111 122369999876543
No 29
>PLN02224 methionine-tRNA ligase
Probab=100.00 E-value=9.2e-60 Score=546.72 Aligned_cols=463 Identities=18% Similarity=0.192 Sum_probs=343.3
Q ss_pred CCCcEEEEcCCCCCCCcccchHHHhHHHHHHHHHHHHhCCCeeEEeccccCCCchHHHHHHhhchhhhhcCCCHHHHHHH
Q 003799 148 DGENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAK 227 (794)
Q Consensus 148 ~~~~f~i~~~pPy~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G~D~hGlpie~~~~k~~~~~~~~~~~~~~~~~~ 227 (794)
.+++|+|++|||||||.||||||++++++|+++||+||+|++|.|++|||+||+||+.++. +.+.+|.++
T Consensus 67 ~~~~~~ittp~pY~NG~~HiGHa~~~~~aDviaR~~r~~G~~V~fv~G~DehG~kI~~~A~-------~~g~~p~e~--- 136 (616)
T PLN02224 67 EADTFVLTTPLYYVNAPPHMGSAYTTIAADSIARFQRLLGKKVIFITGTDEHGEKIATSAA-------ANGRNPPEH--- 136 (616)
T ss_pred CCCeEEEeCCCCCCCCCCchhccHHHHHHHHHHHHHHhcCCceEEecCcCCcchHHHHHHH-------HcCCChHHH---
Confidence 4688999999999999999999999999999999999999999999999999999999886 456777665
Q ss_pred HHHHHHHHHHHHHHHHHHcCCccCCCCccccCChHHHHHHHHHHHHHHHcCCeeecccCceeccCCCccccccccccCCc
Q 003799 228 AAKFAKATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAEAELEYPEG 307 (794)
Q Consensus 228 ~~~~a~~~~~~~~~~~~~lGi~~dwd~~~~T~d~~~~~~v~~~f~~L~~kGlIy~~~~~v~w~~~~~t~Lae~Evey~e~ 307 (794)
|+++.+.+++.+++||| +||++++|++|.|.+.++++|.+|+++|+||++.++++|||+|++++++.|+..+ +
T Consensus 137 ----~~~~~~~~~~~~~~l~I--~~D~f~rTt~~~h~~~vq~~f~~L~~~G~Iy~~~~~~~yc~~ce~f~~~~~l~~~-~ 209 (616)
T PLN02224 137 ----CDIISQSYRTLWKDLDI--AYDKFIRTTDPKHEAIVKEFYARVFANGDIYRADYEGLYCVNCEEYKDEKELLEN-N 209 (616)
T ss_pred ----HHHHHHHHHHHHHHcCC--CCCcCeeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeeeecCCCCCCCCHHHHcCC-C
Confidence 77788889999999999 9999999999999999999999999999999999999999999999999998621 2
Q ss_pred cccccc---------ceeEEeccCCCCcccccccccCCccceeccCCCCccccccEEEECCCc--ceeeeeecccccCCC
Q 003799 308 HVSRSI---------YAVFRMVSAPPSTSGLLNEFLPDLGLAVWTTTPWTVPANAAVAVNAKL--QYAVVEIQSLLEGDS 376 (794)
Q Consensus 308 ~~~~~~---------~v~F~l~~~~~~~~~~l~~~~~~~~l~iwTT~PwTi~~n~av~v~p~~--~Y~~v~~~~~~~~~s 376 (794)
.|..+. -.+|+|+++++.+.+.++ +.|..+ .|+. ..++--+.+++.|.+
T Consensus 210 ~~~~~~~~~~~~~e~~~ff~Ls~~~~~L~~~~~------------~~~~~~--------~p~~~~~~~~~~l~~gL~d~~ 269 (616)
T PLN02224 210 CCPVHQMPCVARKEDNYFFALSKYQKPLEDILA------------QNPRFV--------QPSYRLNEVQSWIKSGLRDFS 269 (616)
T ss_pred CCCCCCCcceEEecceEEEEhHHHHHHHHHHHH------------hCCCcc--------CCHHHHHHHHHHHhcCCCCcc
Confidence 222221 236888876554333322 233322 2332 122223356789999
Q ss_pred CCcCCCCCCCCCcccCCcceEeeecccchHHHHHhcCCceEEEeeeccCcccCCeeecCCCCCcccEEeccCcccccCCC
Q 003799 377 AAPANKKSRPGNVLKDQKKVFIIVASDLVPTLEAKWGTKLVIKKTLAGSDLENCRYVHPVDNRQCPVVIGGDYITTESGT 456 (794)
Q Consensus 377 ~~~~~~~~~~g~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~G~~L~g~~~~~Pl~~~~~pvvi~~~~V~~~~GT 456 (794)
+||.. ..||||+|+++++.+|||.|++..+.+..+....- .|.+.. ..+..| ..+++ ++.|
T Consensus 270 ISR~~--~~WGIpvP~~~~~viYVWfDAl~~Yls~~~~~~~~----~~~~~~-~~~~w~---~~v~~-iGKD-------- 330 (616)
T PLN02224 270 ISRAL--VDWGIPVPDDDKQTIYVWFDALLGYISALTEDNKQ----QNLETA-VSFGWP---ASLHL-IGKD-------- 330 (616)
T ss_pred ccCCC--CCCceECCCCCCcEEEEehhhHHHHHHHhcccccc----cccchh-hccCCC---cceEE-Eeec--------
Confidence 99953 46999999999999999999999998865531100 000000 000111 12223 3222
Q ss_pred CceeecCCCChhhHHHHHHhCCCccccCCCCCccccccCCCCCccccccchHHHHHHHHhcCCcccccccccccccccCC
Q 003799 457 GLVHTAPGHGQEDYVTSLKYGLPILSPVDDEGKFTEEAGKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRT 536 (794)
Q Consensus 457 G~Vh~aPaHg~~D~~~~~~~gl~i~~~vd~~G~~~~~~~~~~G~~v~~ea~~~ii~~L~~~g~l~~~~~~~h~yp~~WRt 536 (794)
++|.|..-...++...|++ ++...+.|.|
T Consensus 331 ----ii~fH~i~wpa~l~~~g~~-----------------------------------------~P~~i~~~g~------ 359 (616)
T PLN02224 331 ----ILRFHAVYWPAMLMSAGLE-----------------------------------------LPKMVFGHGF------ 359 (616)
T ss_pred ----ccccHHHHHHHHHHHCCCC-----------------------------------------CCcEEEeccc------
Confidence 3344544444443333332 2222223322
Q ss_pred CCcEEEcccCccccchhhHHHHHHhhhcCeeecCCCCCCCCCCchhhhhhhhc-CCCCceecChHHHH--HHHHHHHHHH
Q 003799 537 KKPTIFRATEQWFASVEGFRQAAMDAIGQVKWVPPQEAPGYGADVLRLWVSSV-DYTGDVMIGPQVLR--QMSDIYRKLR 613 (794)
Q Consensus 537 ~~pii~r~t~QWfi~~~~~~~~~l~~i~~v~~~P~~~~~~yGaD~lRl~las~-~~~~Di~~s~~~l~--~~~~~~~kl~ 613 (794)
+.+++ +||+++.+|+.+ |.+++++||+|++|||+++. .+.+|.+|+++.+. ...+..+.++
T Consensus 360 -------------l~~eG--~KMSKS~GN~i~-p~e~l~~ygaD~~R~yLl~~~p~~~d~~fs~~~~~~~~NseLan~lg 423 (616)
T PLN02224 360 -------------LTKDG--MKMGKSLGNTLE-PFELVQKFGPDAVRYFFLREVEFGNDGDYSEDRFIKIVNAHLANTIG 423 (616)
T ss_pred -------------EecCC--ccccccCCccCC-HHHHHHHcCcHHHHHHHHhcCCCcCCCCCCHHHHHHHHHHHHHHHHH
Confidence 23334 789999999988 66788899999999999865 66789999998764 3456788899
Q ss_pred hHHHHHHhcccCCCCCCCcCC-CCCChhhHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhHHHHHhhccccc
Q 003799 614 GTLRYLLGNLHDWRVGNSISY-DDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRLY 692 (794)
Q Consensus 614 Nt~rfll~nl~~~~~~~~~~~-~~l~~~D~~il~~l~~lv~~v~~~~e~y~f~~ai~~l~~f~~~~lsn~Yle~~K~rly 692 (794)
|.+.+++..+..+..+ .++. ......|++++++++++++++.++|++|+|++|++.+++|+. .+|+|++..+||..
T Consensus 424 Nll~R~l~~~~k~~~~-~~~~~~~~~~~d~~l~~~l~~li~~v~~~me~~~~~~Al~~i~el~~--~~N~Yi~~~~PW~l 500 (616)
T PLN02224 424 NLLNRTLGLLKKNCES-TLVEDSTVAAEGVPLKDTVEKLVEKAQTNYENLSLSSACEAVLEIGN--AGNTYMDQRAPWFL 500 (616)
T ss_pred HHHHHHHHHHHHhcCC-cCCCccccccccHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH--HHHHHHHhCCchhh
Confidence 9887666554432221 1222 123456899999999999999999999999999999999974 79999999999965
Q ss_pred cCCC--ChHhHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhCCC
Q 003799 693 TGGT--TSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPF 736 (794)
Q Consensus 693 ~~~~--d~~~r~s~~~vL~~iL~~l~~lLaP~~P~~aEEiw~~L~~ 736 (794)
..++ +..+..++..++.++++.+++||+|||||+||+||++|+.
T Consensus 501 ~k~~~~~~~~~~~~l~~l~e~lr~~a~LLaPf~P~~Ae~I~~~Lg~ 546 (616)
T PLN02224 501 FKQGGVSAEEAAKDLVIILEVMRVIAVALSPIAPCLSLRIYSQLGY 546 (616)
T ss_pred hccccccHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHhCC
Confidence 4432 2233455666789999999999999999999999999985
No 30
>KOG0437 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.5e-57 Score=503.93 Aligned_cols=607 Identities=20% Similarity=0.293 Sum_probs=447.0
Q ss_pred CCCcccccHHHHHHHhhcCcchhccc---cCCCCcEEEEcCCCCCCCcccchHHHhHHHHHHHHHHHHhCCCeeEEeccc
Q 003799 120 RANALVREPEIHKLWDDHQVFLRVAD---KNDGENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGW 196 (794)
Q Consensus 120 r~n~~~~E~~~~~~W~~~~~~~~~~~---~~~~~~f~i~~~pPy~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G~ 196 (794)
|..+.++|.++|++|+++++|+.+.. ..+.++|+.+.|.||.||.||+||+++..-.|+..-|+||+|++|+|++|+
T Consensus 11 ~d~L~eiEk~~q~~W~~e~~fevda~~el~~~~~Kff~tfpyPYMNG~LHlGH~FslSK~eFa~~y~rL~Gk~vLfPfgF 90 (1080)
T KOG0437|consen 11 RDSLLEIEKKYQKKWDTEKVFEVDAPNELQKSKPKFFVTFPYPYMNGRLHLGHAFSLSKVEFASGYERLQGKNVLFPFGF 90 (1080)
T ss_pred HHHHHHHHHHHHHhhhhhhheeccCchhcccccCceeEeccccccCceeeccceeehhhhHHHHHHHHhcCceEEeeccc
Confidence 34467889999999999999998753 245799999999999999999999999999999999999999999999999
Q ss_pred cCCCchHHHHHHhhchhhhh-----------------------------------------------------cCCCHHH
Q 003799 197 DCHGLPIELKVLQSLDEDAK-----------------------------------------------------KDLTPSK 223 (794)
Q Consensus 197 D~hGlpie~~~~k~~~~~~~-----------------------------------------------------~~~~~~~ 223 (794)
+|+|+||-..|.|.-+..+. -+++.+|
T Consensus 91 HCTGMPI~A~AdKLkrEie~fG~ppdf~~e~eeEv~eev~~~~~~~~~k~kgKKsk~aaK~g~~kYQw~IM~slGl~deE 170 (1080)
T KOG0437|consen 91 HCTGMPIKASADKLKREIELFGCPPDFPEEEEEEVEEEVKTEDAIEDVKFKGKKSKAAAKTGGQKYQWEIMESLGLPDEE 170 (1080)
T ss_pred ccCCCccHHhHHHHHHHHHHhCCCCCCchhhhhhhhhcccccccccccccccchhhHHHhhcccchhHHHHHHcCCCHHH
Confidence 99999998766543211100 0111112
Q ss_pred HHHH--HHHHHHHHHHHHHHHHHHcCCccCCCCccccC--ChHHHHHHHHHHHHHHHcCCeeecccCceeccCCCccccc
Q 003799 224 LRAK--AAKFAKATVKAQMASFKRYGVWADWNNPYLTL--DPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAE 299 (794)
Q Consensus 224 ~~~~--~~~~a~~~~~~~~~~~~~lGi~~dwd~~~~T~--d~~~~~~v~~~f~~L~~kGlIy~~~~~v~w~~~~~t~Lae 299 (794)
+.+. +..|....--.-.++++++|.-+||.+.+.|+ +|.|.++|.|+|.+|.+.|.|..|++-..|||.+++++.|
T Consensus 171 I~~F~d~~~WL~yFPpLc~~dlk~~gl~iDWRRSFITTDvNpYyDsFVRWQ~n~L~~~gkI~fgkRyTIyspkDgQpCmD 250 (1080)
T KOG0437|consen 171 IKKFADPKHWLYYFPPLCERDLKRFGLGIDWRRSFITTDVNPYYDSFVRWQFNKLKEAGKIKFGKRYTIYSPKDGQPCMD 250 (1080)
T ss_pred hhcccChhHHHHhCChHHHHHHHHhCCCcceeeeeeecccchhHHHHHHHHHHHHHhcCCcccCcceeeecCCCCCcccc
Confidence 1100 11111212234578999999999999999999 5899999999999999999999999999999999999999
Q ss_pred cccccCCcccccccceeEEe--ccCCCCcccccccccCCccceeccCCCCccccccEEEECCCcceeeeeecccccCCCC
Q 003799 300 AELEYPEGHVSRSIYAVFRM--VSAPPSTSGLLNEFLPDLGLAVWTTTPWTVPANAAVAVNAKLQYAVVEIQSLLEGDSA 377 (794)
Q Consensus 300 ~Evey~e~~~~~~~~v~F~l--~~~~~~~~~~l~~~~~~~~l~iwTT~PwTi~~n~av~v~p~~~Y~~v~~~~~~~~~s~ 377 (794)
|+..-.|| +.|..|+..++ .++.......+.. .+++++++|.||+|++|.++++|+|+.+|...+..+
T Consensus 251 HDR~sGEg-V~PqeytliKle~le~~p~~l~~~~~--~~v~lvAaTLRpetmyGQTnc~V~p~~~y~~fe~~~------- 320 (1080)
T KOG0437|consen 251 HDRASGEG-VGPQEYTLIKLEVLEPFPKALSSLKD--LRVYLVAATLRPETMYGQTNCYVGPDIKYGGFEACN------- 320 (1080)
T ss_pred cccccCCC-CCcceEEEEEEEecccchhhcccccc--ceeeeeehhcCCccccCccceEEcCCccEEeEEecC-------
Confidence 99987776 45566654444 3332211111111 247899999999999999999999999999888652
Q ss_pred CcCCCCCCCCCcccCCcceEeeecccchHHHHHh-cCC---ceEEEeeeccCcccCCeeecCCCCCcccEEeccCccccc
Q 003799 378 APANKKSRPGNVLKDQKKVFIIVASDLVPTLEAK-WGT---KLVIKKTLAGSDLENCRYVHPVDNRQCPVVIGGDYITTE 453 (794)
Q Consensus 378 ~~~~~~~~~g~~~~~~~~~~~iv~~~~~~~~~~~-~~~---~~~~~~~~~G~~L~g~~~~~Pl~~~~~pvvi~~~~V~~~ 453 (794)
..+.+|..++++.++.-+ +-. .+..+.+++|.+|+|..+..|+.-.+.-.++|...|..+
T Consensus 321 ----------------~~e~fi~t~raa~NmsyQ~~tk~~g~~~~~~~i~G~~~iGa~l~aPlsv~~~vy~LPMlTi~~~ 384 (1080)
T KOG0437|consen 321 ----------------ETEVFIATERAARNMSYQKLTKERGVVSCLVTITGYDLIGAPLSAPLSVYERVYALPMLTILAT 384 (1080)
T ss_pred ----------------CceEEEeehHHHhhcchhhccccCCcccceeeecchhhcCCcccCcchhhheeeeccceeeecc
Confidence 245666666667666543 111 356788999999999999999986555455888999999
Q ss_pred CCCCceeecCCCChhhHHHHHH-------hCC----------Ccccc--------------------CCC----------
Q 003799 454 SGTGLVHTAPGHGQEDYVTSLK-------YGL----------PILSP--------------------VDD---------- 486 (794)
Q Consensus 454 ~GTG~Vh~aPaHg~~D~~~~~~-------~gl----------~i~~~--------------------vd~---------- 486 (794)
.|||+|.++|+.+++||..++. ||| ||+.. -|.
T Consensus 385 KGTGvVtsVpsdsPDDf~al~dL~kK~~lYg~~~ew~~~E~vPii~~~~fGdl~ae~vc~~lKiqs~~dk~klaeaK~~~ 464 (1080)
T KOG0437|consen 385 KGTGVVTSVPSDSPDDFAALQDLKKKPELYGLKPEWVLFEIVPIIRIPGFGDLAAEVVCDELKIQSPNDKKKLAEAKKLA 464 (1080)
T ss_pred CCceeEEeCCCCCchhhhHHHhhhhcccccCCChhhccccccceeeccccchhhHHHHHHHHhccCchhHHHHHHhhHHH
Confidence 9999999999999999998742 343 33221 000
Q ss_pred --CCccccc--cCCCCCccccccchHHHHHHHHhcCCccc-ccccccccccccCCCCcEEEcccCccccchh--hHHHHH
Q 003799 487 --EGKFTEE--AGKFSGLDVLGDGNVAVVKYLDEQMSLIM-EEPYEHKYPYDWRTKKPTIFRATEQWFASVE--GFRQAA 559 (794)
Q Consensus 487 --~G~~~~~--~~~~~G~~v~~ea~~~ii~~L~~~g~l~~-~~~~~h~yp~~WRt~~pii~r~t~QWfi~~~--~~~~~~ 559 (794)
+|.++.. .|+|.|..| .++.+.|-..|-+.|..+. .++- -++-.|++..||.-+++|||++.- .||+.+
T Consensus 465 y~e~fy~g~mlig~y~G~KV-e~~K~~i~~~li~~g~a~~y~EPE---kqVmSRSGdeCiVAL~DQWYldYgE~eWKk~a 540 (1080)
T KOG0437|consen 465 YLEGFYEGTMLIGKYKGEKV-EDAKPKIKTDLIETGDALKYNEPE---KQVMSRSGDECIVALCDQWYLDYGEAEWKKQA 540 (1080)
T ss_pred HHHhhhcceEEEeccccccH-HhhhhHHHHHHHhcccceeecCcc---hhhhccCCCceEEEeccchhhhcCcHHHHHHH
Confidence 1222111 378999999 5999999999999997665 4442 345599999999999999999884 599999
Q ss_pred HhhhcCeeecCCC-------------------------------------------------------------------
Q 003799 560 MDAIGQVKWVPPQ------------------------------------------------------------------- 572 (794)
Q Consensus 560 l~~i~~v~~~P~~------------------------------------------------------------------- 572 (794)
.+++++++.+-++
T Consensus 541 ~~cLe~l~~f~dEtR~~fE~tLdWL~~wacsRsyGLGTrlPWD~qyLvESLSDSTIYmAyYTvaHll~~d~~g~~~~plg 620 (1080)
T KOG0437|consen 541 KECLENLNTFSDETRNGFEDTLDWLGQWACSRSYGLGTRLPWDEQYLVESLSDSTIYMAYYTVAHLLHRDLYGKVEGPLG 620 (1080)
T ss_pred HHHHhhhhccCHHHHHHHHHHHHHHHhhhhhccccCCCCCCCcHHHHHHhcchhHHHHHHHHHHHHHHHhhccCCcccCC
Confidence 9999877443332
Q ss_pred --------------------------------------------------------------------------------
Q 003799 573 -------------------------------------------------------------------------------- 572 (794)
Q Consensus 573 -------------------------------------------------------------------------------- 572 (794)
T Consensus 621 i~~~QMtdeVwdYvF~~~~~~k~t~i~~e~L~~lr~eF~Y~YPiDlrvsGKDLi~NHLtfflynHvAl~~~k~WPkgira 700 (1080)
T KOG0437|consen 621 IKPDQMTDEVWDYVFLNEPYPKNTAIPEEALSNLRREFEYFYPIDLRVSGKDLIPNHLTFFLYNHVALFPEKKWPKGIRA 700 (1080)
T ss_pred CChhhcCHHHHHHhhccCCCCcCCCccHHHHHHHHHhhhcccceeeeeccccccccceeEeeeehhhhcccccCccceee
Confidence
Q ss_pred -----------------------CCCCCCCchhhhhhhhc-CCCCceecChHHHHHHHHHHHHHHhHHHHHHhcccCCCC
Q 003799 573 -----------------------EAPGYGADVLRLWVSSV-DYTGDVMIGPQVLRQMSDIYRKLRGTLRYLLGNLHDWRV 628 (794)
Q Consensus 573 -----------------------~~~~yGaD~lRl~las~-~~~~Di~~s~~~l~~~~~~~~kl~Nt~rfll~nl~~~~~ 628 (794)
.+++||||+.|+-++.+ |--+|.+|.+.. +..++.||.+-+.++...+.+.+.
T Consensus 701 NGHLmLNsEKMSKSTGNfmTL~qaieKFgad~tRlalAdaGD~veDANF~ea~---AnAaILRLyt~~ew~eEm~~~~s~ 777 (1080)
T KOG0437|consen 701 NGHLMLNSEKMSKSTGNFMTLEQAIEKFGADGTRLALADAGDGVEDANFVEAN---ANAAILRLYTYVEWIEEMCENRSS 777 (1080)
T ss_pred CceEEecchhhccccCCeeeHHHHHHHhCccceeeeeecccCCcccchhHHhc---ccHHHHHHHHHHHHHHHHHhhHHh
Confidence 34689999999999976 666799997643 345677888877777655543221
Q ss_pred CCCcCCCCCChhhHHHHHHHHHHHHHHHHHHhcccHHHHHHH-HHHHHHHhhhHHHHHhhccccccCCCChHhHHHHHHH
Q 003799 629 GNSISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQI-IQRFIIVDLSNFYFDVAKDRLYTGGTTSFTRRSCQTV 707 (794)
Q Consensus 629 ~~~~~~~~l~~~D~~il~~l~~lv~~v~~~~e~y~f~~ai~~-l~~f~~~~lsn~Yle~~K~rly~~~~d~~~r~s~~~v 707 (794)
-...+. ..-.|+.+.+.+|.++...+++|+...|..|++. .++|.. ..++|-+..- + ......
T Consensus 778 LrtGp~--~~FaDrvf~nemN~~i~~t~~aye~~~fk~aLK~Gfyd~qa--ArD~Yrel~g------~------~mh~dL 841 (1080)
T KOG0437|consen 778 LRTGPA--STFADRVFENEMNALIAKTERAYEDTLFKDALKYGFYDLQA--ARDMYRELCG------E------GMHRDL 841 (1080)
T ss_pred hccCch--hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHHH--HHHHHHHHhc------c------cccHHH
Confidence 111111 1267999999999999999999999999999985 556653 5788877642 1 112346
Q ss_pred HHHHHHHHHHHhccccchHHHHHHHhCCCCccccCCCCCCceeecCCCCCCcccCCCChhHHHHHHHHHHHHHHHHH
Q 003799 708 LSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAAEFVFESKWPVLDEKWRTFPVGEIYFWGKILEVIVVVTY 784 (794)
Q Consensus 708 L~~iL~~l~~lLaP~~P~~aEEiw~~L~~~~~~~~~~~~~sV~~~~wP~~~e~~~~~~~~~~~~~~~i~~lR~~v~~ 784 (794)
++..+++.++||+||+||+||.||+.+..+ ..||+. +||.+++.-...-.......+.+..+|.+...
T Consensus 842 v~r~ietqtlLLaPi~Ph~aeyiw~~~~~~--------~~~v~~-~wP~~s~~~e~~~~~~~yl~~~l~r~~~~l~~ 909 (1080)
T KOG0437|consen 842 VFRFIETQTLLLAPICPHLAEYIWRTVLKK--------NFSVNV-GWPFVSPPDEKLGSSALYLKRTLKRLRAELEK 909 (1080)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHhccC--------Cceeec-CCCCCCCHHHHhhhhHHHHHHHHHHHHHHHHh
Confidence 788899999999999999999999998754 245655 99987653111000112334555555555443
No 31
>PLN02610 probable methionyl-tRNA synthetase
Probab=100.00 E-value=2.4e-57 Score=540.77 Aligned_cols=467 Identities=15% Similarity=0.174 Sum_probs=339.9
Q ss_pred CCCCcEEEEcCCCCCCCcccchHHHhH-HHHHHHHHHHHhCCCeeEEeccccCCCchHHHHHHhhchhhhhcCCCHHHHH
Q 003799 147 NDGENFVLHDGPPYANGNLHMGHALNK-ILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLR 225 (794)
Q Consensus 147 ~~~~~f~i~~~pPy~nG~lHiGHa~~~-il~Dii~R~~r~~G~~V~~~~G~D~hGlpie~~~~k~~~~~~~~~~~~~~~~ 225 (794)
.+.++|+||+|||||||.|||||+++. +.+|+++||+||+|++|+|++|+|+||+||+.+|+ +.+.+|.++
T Consensus 14 ~~~~~~~ITt~~pY~Ng~~HlGH~~~~~l~aDv~aRy~r~~G~~v~f~~GtDehG~~i~~~A~-------~~g~~p~e~- 85 (801)
T PLN02610 14 PGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNAIYICGTDEYGTATETKAL-------EENCTPKEI- 85 (801)
T ss_pred CCCCCEEEeCCCCCCCCCcccchhhhhHHHHHHHHHHHHhCCCceEecccccCCcHHHHHHHH-------HcCCCHHHH-
Confidence 456789999999999999999999975 66999999999999999999999999999999987 557788776
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCccCCCCccccCChHHHHHHHHHHHHHHHcCCeeecccCceeccCCCccccccccccC
Q 003799 226 AKAAKFAKATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAEAELEYP 305 (794)
Q Consensus 226 ~~~~~~a~~~~~~~~~~~~~lGi~~dwd~~~~T~d~~~~~~v~~~f~~L~~kGlIy~~~~~v~w~~~~~t~Lae~Evey~ 305 (794)
|+++.+.++++|++||| +||++++|++|.|.+.++++|.+|+++|+||++.++++||++|+++|+|..|+
T Consensus 86 ------~d~~~~~~~~~~~~l~i--~~D~f~rT~~~~h~~~vq~~f~~L~~~G~Iy~~~~~~~yc~~~e~fl~d~~v~-- 155 (801)
T PLN02610 86 ------CDKYHAIHKEVYDWFDI--SFDKFGRTSTPQQTEICQAIFKKLMENNWLSENTMQQLYCDTCQKFLADRLVE-- 155 (801)
T ss_pred ------HHHHHHHHHHHHHHcCC--ccccCccCCCHHHHHHHHHHHHHHHHCCCEEEeeEEEeecCCCCCCcchHHhc--
Confidence 89999999999999999 88999999999999999999999999999999999999999999999999886
Q ss_pred Cccccc--ccce---------------eEEeccCC----CCccccccc---c--cCC--ccceeccC-CCCccccccEEE
Q 003799 306 EGHVSR--SIYA---------------VFRMVSAP----PSTSGLLNE---F--LPD--LGLAVWTT-TPWTVPANAAVA 356 (794)
Q Consensus 306 e~~~~~--~~~v---------------~F~l~~~~----~~~~~~l~~---~--~~~--~~l~iwTT-~PwTi~~n~av~ 356 (794)
|.|+. |.+- ...+.+.. ....+..++ + +.. ..|.-|.. .|
T Consensus 156 -G~CP~~~C~~~~a~Gd~Ce~Cg~~~~p~eLi~p~c~~~g~~~~~~~~~~~ff~Ls~~~~~L~~~~~~~~---------- 224 (801)
T PLN02610 156 -GTCPTEGCNYDSARGDQCEKCGKLLNPTELIDPKCKVCKNTPRIRDTDHLFLELPLLKDKLVEYINETS---------- 224 (801)
T ss_pred -CcCCccccCccccccchhhhccccCChhhhcCCcccCCCCcceEEEcceEEEEhHHHHHHHHHHHHhCC----------
Confidence 56665 4331 00111100 000000000 0 000 00111110 00
Q ss_pred ECCCcceee-----eeecccccCCCCCcCCCCCCCCCcccCC--cceEeeecccchHHHHHhc-CCceEEEeeeccCccc
Q 003799 357 VNAKLQYAV-----VEIQSLLEGDSAAPANKKSRPGNVLKDQ--KKVFIIVASDLVPTLEAKW-GTKLVIKKTLAGSDLE 428 (794)
Q Consensus 357 v~p~~~Y~~-----v~~~~~~~~~s~~~~~~~~~~g~~~~~~--~~~~~iv~~~~~~~~~~~~-~~~~~~~~~~~G~~L~ 428 (794)
+.|+.+... --+..++.|.++||. ..|||++|.+ .++.+|||.|++-++.+.. +.. .++
T Consensus 225 ~~~~~~~n~~~~~~~~l~~gL~d~~IsR~---~~WGipvP~~~~~~~v~YVWfDAl~~Yis~~~~~~---------~~~- 291 (801)
T PLN02610 225 VAGGWSQNAIQTTNAWLRDGLKPRCITRD---LKWGVPVPLEKYKDKVFYVWFDAPIGYVSITACYT---------PEW- 291 (801)
T ss_pred CCCCcCHHHHHHHHHHHhCCCCCcceeee---cCCcccCCCCCCCCcEEEEehhhHHHHHHHHhhhh---------hHH-
Confidence 112111110 112457899999994 7799999977 6899999999999988753 220 000
Q ss_pred CCeeecCCCCCc-ccEEeccCcccccCCCCceeecCCCChhhHHHHHHhCCC--ccccCCCCCccccccCCCCCcccccc
Q 003799 429 NCRYVHPVDNRQ-CPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLP--ILSPVDDEGKFTEEAGKFSGLDVLGD 505 (794)
Q Consensus 429 g~~~~~Pl~~~~-~pvvi~~~~V~~~~GTG~Vh~aPaHg~~D~~~~~~~gl~--i~~~vd~~G~~~~~~~~~~G~~v~~e 505 (794)
..+|..-.+.+ +++ |+-| +++.|..-...+++..|++ ++.-|-.+|.++
T Consensus 292 -~~~W~~~~~~~~~hf-iGKD------------i~~fH~i~wPa~L~a~g~~~~~p~~i~~~g~l~-------------- 343 (801)
T PLN02610 292 -EKWWKNPENVELYQF-MGKD------------NVPFHTVMFPSTLLGTGENWTMMKTISVTEYLN-------------- 343 (801)
T ss_pred -HHhcCCcccceEEEE-Eeee------------cchhHHHHHHHHHHhCCCCcCCCCEEEeccCEe--------------
Confidence 12332100101 233 3333 5667777666666666654 333333333333
Q ss_pred chHHHHHHHHhcCCcccccccccccccccCCCCcEEEcccCccccchhhHHHHHHhhhcCeeecCCCCCCC-CCCchhhh
Q 003799 506 GNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTKKPTIFRATEQWFASVEGFRQAAMDAIGQVKWVPPQEAPG-YGADVLRL 584 (794)
Q Consensus 506 a~~~ii~~L~~~g~l~~~~~~~h~yp~~WRt~~pii~r~t~QWfi~~~~~~~~~l~~i~~v~~~P~~~~~~-yGaD~lRl 584 (794)
+++ +||+++.+++.| |.++++. ||+|++||
T Consensus 344 ----------------------------------------------~eG--~KMSKS~GNvV~-p~~~i~~~yg~D~lRy 374 (801)
T PLN02610 344 ----------------------------------------------YEG--GKFSKSKGVGVF-GNDAKDTNIPVEVWRY 374 (801)
T ss_pred ----------------------------------------------cCC--ceecCcCCcccC-HHHHHhccCCchHhHH
Confidence 223 688999999988 6667774 99999999
Q ss_pred hhhhc-CCCCceecChHHHHHH--HHHHHHHHhHHHHHHhccc----CCCCCCCcCC---CCCChhhHHHHHHHHHHHHH
Q 003799 585 WVSSV-DYTGDVMIGPQVLRQM--SDIYRKLRGTLRYLLGNLH----DWRVGNSISY---DDLPMIDQYALFQLENIVKN 654 (794)
Q Consensus 585 ~las~-~~~~Di~~s~~~l~~~--~~~~~kl~Nt~rfll~nl~----~~~~~~~~~~---~~l~~~D~~il~~l~~lv~~ 654 (794)
|++.. .+++|.+|+.+.+... .+..++|+|.+.++++.+. ++.. ..+|. .+...+|+|+++++++++++
T Consensus 375 yLl~~~p~~~D~dFs~~~f~~~~NsdL~n~lGNlv~R~~~~i~~~~~k~~~-g~vp~~~~~~~~~~d~~Ll~~~~~~i~~ 453 (801)
T PLN02610 375 YLLTNRPEVSDTLFTWADLQAKLNSELLNNLGNFINRVLSFIAKPPGAGYG-SVIPDAPGAESHPLTKKLAEKVGKLVEQ 453 (801)
T ss_pred HhhhcCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccC-CcCCCccccccchhhHHHHHHHHHHHHH
Confidence 99854 7778999999877554 5578999997776666554 2221 12221 12456799999999999999
Q ss_pred HHHHHhcccHHHHHHHHHHHHHHhhhHHHHHhhccccccCCCChHhHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhC
Q 003799 655 IRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNL 734 (794)
Q Consensus 655 v~~~~e~y~f~~ai~~l~~f~~~~lsn~Yle~~K~rly~~~~d~~~r~s~~~vL~~iL~~l~~lLaP~~P~~aEEiw~~L 734 (794)
+.++|++|+|++|++.+++|.. ++|+||+..+||...+. +..+...+..++.++++.+++||+||||++||+||++|
T Consensus 454 v~~~me~~~~~~Al~~I~~l~~--~~NkYIe~~kPW~L~k~-d~~~l~~vl~~~le~lr~la~LL~PfmP~~aeeI~~~L 530 (801)
T PLN02610 454 YVEAMEKVKLKQGLKTAMSISS--EGNAYLQESQFWKLYKE-DKPSCAIVVKTSVGLVYLLACLLEPFMPSFSKEVLKQL 530 (801)
T ss_pred HHHHHHhcCHHHHHHHHHHHHH--HHHHHHHhcCchhhhCC-CHHHHHHHHHHHHHHHHHHHHHHhCcccHHHHHHHHHh
Confidence 9999999999999999999864 89999999999965543 34444556667778999999999999999999999999
Q ss_pred CC
Q 003799 735 PF 736 (794)
Q Consensus 735 ~~ 736 (794)
+.
T Consensus 531 g~ 532 (801)
T PLN02610 531 NL 532 (801)
T ss_pred CC
Confidence 85
No 32
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.4e-57 Score=512.68 Aligned_cols=462 Identities=21% Similarity=0.248 Sum_probs=359.0
Q ss_pred CCcEEEEcCCCCCCCcccchHHHhHHHHHHHHHHHHhCCCeeEEeccccCCCchHHHHHHhhchhhhhcCCCHHHHHHHH
Q 003799 149 GENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKA 228 (794)
Q Consensus 149 ~~~f~i~~~pPy~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G~D~hGlpie~~~~k~~~~~~~~~~~~~~~~~~~ 228 (794)
.++|+||+|+|||||.|||||+++++.+|+++||+||+|++|+|++|+|+||+||+.+|+ +++++|+++
T Consensus 4 ~~~~~VTtalpY~Ng~~HlGH~~~~l~ADv~aRy~Rl~G~~v~fvtGtDeHGt~I~~~A~-------~~g~tP~el---- 72 (558)
T COG0143 4 MKKILVTTALPYPNGPPHLGHLYTYLAADVYARYLRLRGYEVFFLTGTDEHGTKIELKAE-------KEGITPQEL---- 72 (558)
T ss_pred CCcEEEecCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCCeEEEEeccCCCCCHHHHHHH-------HcCCCHHHH----
Confidence 478999999999999999999999999999999999999999999999999999999998 678999888
Q ss_pred HHHHHHHHHHHHHHHHHcCCccCCCCccccCChHHHHHHHHHHHHHHHcCCeeecccCceeccCCCccccccccccCCcc
Q 003799 229 AKFAKATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAEAELEYPEGH 308 (794)
Q Consensus 229 ~~~a~~~~~~~~~~~~~lGi~~dwd~~~~T~d~~~~~~v~~~f~~L~~kGlIy~~~~~v~w~~~~~t~Lae~Evey~e~~ 308 (794)
|+++.+.++++++.||| ++|++.+|+++.|.+.++++|.+|+++|+||.+..+++||++|+++|+|.+|+ |.
T Consensus 73 ---~d~~~~~~~~~~~~l~I--sfD~F~rTt~~~h~~~vq~~f~~L~~~G~I~~~~~~~~Yc~~~e~fl~dr~v~---g~ 144 (558)
T COG0143 73 ---VDKNHEEFKELFKALNI--SFDNFIRTTSPEHKELVQEFFLKLYENGDIYLREYEGLYCVSCERFLPDRYVE---GT 144 (558)
T ss_pred ---HHHHHHHHHHHHHHhCC--cccccccCCCHHHHHHHHHHHHHHHHCCCEeccceeeeEcccccccccchhee---cc
Confidence 99999999999999999 99999999999999999999999999999999999999999999999999997 45
Q ss_pred cccccc---------------------------------------eeEEeccCCCCcccccccccCCccceeccCCCCcc
Q 003799 309 VSRSIY---------------------------------------AVFRMVSAPPSTSGLLNEFLPDLGLAVWTTTPWTV 349 (794)
Q Consensus 309 ~~~~~~---------------------------------------v~F~l~~~~~~~~~~l~~~~~~~~l~iwTT~PwTi 349 (794)
|+.|.+ .+|+++.+++.+.+.++ ..|.
T Consensus 145 cp~cg~~~arGD~Ce~Cg~~~~P~~l~~p~~~i~g~~p~~r~~~hyFf~L~~~~~~L~~~~~------------~~~~-- 210 (558)
T COG0143 145 CPKCGGEDARGDQCENCGRTLDPTELINPVCVISGATPEVREEEHYFFRLSKFQDKLLEWYE------------SNPD-- 210 (558)
T ss_pred CCCcCccccCcchhhhccCcCCchhcCCCeeEeeCCCcccccceeEEEEHHHhHHHHHHHHH------------hCcc--
Confidence 554432 12333322221111111 1121
Q ss_pred ccccEEEECCCc--ceeeeeecccccCCCCCcCCCCCCCCCcccCCcceEeeecccchHHHHHhcCCceEEEeeeccCcc
Q 003799 350 PANAAVAVNAKL--QYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFIIVASDLVPTLEAKWGTKLVIKKTLAGSDL 427 (794)
Q Consensus 350 ~~n~av~v~p~~--~Y~~v~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~G~~L 427 (794)
.+-|.. .+.+--+.+++.|.+|||. ...||+++|+.+++.+|||.|++-.+.+.++.-.. .|.+.
T Consensus 211 ------~~~p~~~~ne~~~~i~~GL~d~~IsR~--~~~WGipvP~~p~kv~YVWfDAligYisa~~~~~~-----~~~~~ 277 (558)
T COG0143 211 ------FIWPANRRNEVLNFLKEGLKDLSITRT--DLDWGIPVPGDPGKVIYVWFDALIGYISALGELAE-----IGDDE 277 (558)
T ss_pred ------ccCChHHHHHHHHHHHccCcccceecC--CCCCCccCCCCCCCEEEEeeccHHHHHHHhcchhc-----cCChH
Confidence 112221 2333334577999999996 78999999999999999999999999887654211 11111
Q ss_pred cCCeeecCCCCCc-ccEEeccCcccccCCCCceeecCCCChhhHHHHHHhCCCccccCCCCCccccccCCCCCccccccc
Q 003799 428 ENCRYVHPVDNRQ-CPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPILSPVDDEGKFTEEAGKFSGLDVLGDG 506 (794)
Q Consensus 428 ~g~~~~~Pl~~~~-~pvvi~~~~V~~~~GTG~Vh~aPaHg~~D~~~~~~~gl~i~~~vd~~G~~~~~~~~~~G~~v~~ea 506 (794)
.-.++|..= +.+ +++ |+.| +++.|....-.+++..|++++..|-.+|.++.+
T Consensus 278 ~~~~~W~~~-~~e~vhf-IGKD------------ii~FHav~wPamL~~~~~~lP~~i~ahg~l~~~------------- 330 (558)
T COG0143 278 DFKKFWPAD-DTELVHF-IGKD------------IIRFHAVYWPAMLMAAGLPLPTRIFAHGFLTLE------------- 330 (558)
T ss_pred HHHhhCCCC-CceEEEE-eccc------------cCcchhhHHHHHHHhCCCCCCCEEEeeeeEEEC-------------
Confidence 112233221 111 222 3333 567777777777777777655555555554432
Q ss_pred hHHHHHHHHhcCCcccccccccccccccCCCCcEEEcccCccccchhhHHHHHHhhhcCeeecCCCCCCCCCCchhhhhh
Q 003799 507 NVAVVKYLDEQMSLIMEEPYEHKYPYDWRTKKPTIFRATEQWFASVEGFRQAAMDAIGQVKWVPPQEAPGYGADVLRLWV 586 (794)
Q Consensus 507 ~~~ii~~L~~~g~l~~~~~~~h~yp~~WRt~~pii~r~t~QWfi~~~~~~~~~l~~i~~v~~~P~~~~~~yGaD~lRl~l 586 (794)
+ +||+++.+++.| |...+..||+|++|||+
T Consensus 331 -----------------------------------------------G--~KmSKSrG~~V~-~~~~~~~~~~D~lRYyL 360 (558)
T COG0143 331 -----------------------------------------------G--QKMSKSRGNVVD-PDELLEQYGVDALRYYL 360 (558)
T ss_pred -----------------------------------------------C--ccccccCCcEEe-HHHHHHHcCchHhHHHH
Confidence 2 688999999998 77778889999999998
Q ss_pred hhc-CCCCceecChHHHHH--HHHHHHHHHhHHHHHHhcccCCCCCCCcCCC---CCChhhHHHHHHHHHHHHHHHHHHh
Q 003799 587 SSV-DYTGDVMIGPQVLRQ--MSDIYRKLRGTLRYLLGNLHDWRVGNSISYD---DLPMIDQYALFQLENIVKNIRESYE 660 (794)
Q Consensus 587 as~-~~~~Di~~s~~~l~~--~~~~~~kl~Nt~rfll~nl~~~~~~~~~~~~---~l~~~D~~il~~l~~lv~~v~~~~e 660 (794)
+.. ..++|.+|+.+.+.+ ..+..+++.|.+.++++.+.++..+ .+|.. .. +.|+.++..+.++.+.+.++|+
T Consensus 361 ~~~~p~~~D~dFs~~~f~~rvN~dL~n~lgNl~~R~~~fi~k~~~g-~vp~~~~~~~-~~d~~~~~~~~~~~~~~~~~~e 438 (558)
T COG0143 361 ARELPEGSDGDFSWEDFVERVNADLANKLGNLANRTLGFINKYFDG-VVPAAGAPDL-EEDEELLALAREALEAVAEAME 438 (558)
T ss_pred HHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-cCCccccccc-hhhHHHHHHHHHHHHHHHHHHH
Confidence 854 778899999998854 4678899999888877766554332 22221 23 7899999999999999999999
Q ss_pred cccHHHHHHHHHHHHHHhhhHHHHHhhccccccCCCChHhHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhCCCC
Q 003799 661 SYQFFKIFQIIQRFIIVDLSNFYFDVAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFA 737 (794)
Q Consensus 661 ~y~f~~ai~~l~~f~~~~lsn~Yle~~K~rly~~~~d~~~r~s~~~vL~~iL~~l~~lLaP~~P~~aEEiw~~L~~~ 737 (794)
.++|++|+..+++++. .+|.|++..+||...+.....+.+++..++.++++.++.+|+||||.+|+++|++|+..
T Consensus 439 ~~~~~~Al~~i~~l~~--~~N~Yi~~~~PW~l~k~~~~~~~~~vl~~~~~~~r~la~ll~P~mP~~a~ki~~~L~~~ 513 (558)
T COG0143 439 KYEFRKALEEIMALAS--RANKYIDEQAPWKLAKEDKRERLATVLYLALELVRVLAILLYPFMPETAEKIWDQLGLE 513 (558)
T ss_pred hhhHHHHHHHHHHHHH--HHHHHhhcCCCchhhccCcHHHHHHHHHHHHHHHHHHHHHhcCcCcchHHHHHHHhCCc
Confidence 9999999999999987 69999999999987766334444566777788899999999999999999999999853
No 33
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=5.4e-57 Score=535.12 Aligned_cols=458 Identities=21% Similarity=0.291 Sum_probs=345.1
Q ss_pred CcEEEEcCCCCCCCcccchHHHhHHHHHHHHHHHHhCCCeeEEeccccCCCchHHHHHHhhchhhhhcCCCHHHHHHHHH
Q 003799 150 ENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKAA 229 (794)
Q Consensus 150 ~~f~i~~~pPy~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G~D~hGlpie~~~~k~~~~~~~~~~~~~~~~~~~~ 229 (794)
++|+|++|+|||||.+||||+++++++|+++||+||+|++|.|++|+|+||+||+.++. +.+.+|.++
T Consensus 4 ~~~~it~~~py~ng~~HiGH~~~~~~aDv~~R~~r~~G~~v~~~~g~D~~g~~i~~~A~-------~~g~~~~e~----- 71 (648)
T PRK12267 4 KTFYITTPIYYPNGKPHIGHAYTTIAADALARYKRLQGYDVFFLTGTDEHGQKIQQAAE-------KAGKTPQEY----- 71 (648)
T ss_pred CCEEEeeCCCCCCCCcccccchHHHHHHHHHHHHHhcCCceEeecCCCCcchHHHHHHH-------HcCCCHHHH-----
Confidence 58999999999999999999999999999999999999999999999999999999886 557788765
Q ss_pred HHHHHHHHHHHHHHHHcCCccCCCCccccCChHHHHHHHHHHHHHHHcCCeeecccCceeccCCCccccccccccCCccc
Q 003799 230 KFAKATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAEAELEYPEGHV 309 (794)
Q Consensus 230 ~~a~~~~~~~~~~~~~lGi~~dwd~~~~T~d~~~~~~v~~~f~~L~~kGlIy~~~~~v~w~~~~~t~Lae~Evey~e~~~ 309 (794)
|+++.+.++++|++||| ++|.+++|+++.|.+.++++|.+|+++|+||++.++++||+.|+++|+|.++.. .++|
T Consensus 72 --~d~~~~~fk~~l~~lgI--~~D~f~rTt~~~h~~~v~~~~~~L~~kG~IY~~~~~~~yc~~~~~~l~~~~l~~-~~~c 146 (648)
T PRK12267 72 --VDEISAGFKELWKKLDI--SYDKFIRTTDERHKKVVQKIFEKLYEQGDIYKGEYEGWYCVSCETFFTESQLVD-GGKC 146 (648)
T ss_pred --HHHHHHHHHHHHHHcCC--CCCCCeeCCCHHHHHHHHHHHHHHHHCCCEEEeeEEEeecCCCCccCChHHhcc-CCcC
Confidence 89999999999999999 788999999999999999999999999999999999999999999999999762 1567
Q ss_pred ccccc---------eeEEeccCCCCcccccccccCCccceeccCCCCccccccEEEECCCcc--eee-eeecccccCCCC
Q 003799 310 SRSIY---------AVFRMVSAPPSTSGLLNEFLPDLGLAVWTTTPWTVPANAAVAVNAKLQ--YAV-VEIQSLLEGDSA 377 (794)
Q Consensus 310 ~~~~~---------v~F~l~~~~~~~~~~l~~~~~~~~l~iwTT~PwTi~~n~av~v~p~~~--Y~~-v~~~~~~~~~s~ 377 (794)
+.|.. .+|+++++++.+.+.++ +.|. .+.|+.. ..+ --+.+++.|.++
T Consensus 147 ~~cg~~~e~~~~~~~f~~l~~~~~~l~~~~~------------~~~~--------~~~p~~~~~~~~~~~l~~~l~D~~I 206 (648)
T PRK12267 147 PDCGREVELVKEESYFFRMSKYQDRLLEYYE------------ENPD--------FIQPESRKNEMINNFIKPGLEDLSI 206 (648)
T ss_pred CCCCCcCeEEecceEEEEcHHHHHHHHHHHh------------hCCc--------ccCCHHHHHHHHHHHhhCCCCCccc
Confidence 66643 25777765543333222 1121 1223321 122 123456889999
Q ss_pred CcCCCCCCCCCcccCCcceEeeecccchHHHHHhcCCceEEEeeeccCcccCCeeecCCCCCcccEEeccCcccccCCCC
Q 003799 378 APANKKSRPGNVLKDQKKVFIIVASDLVPTLEAKWGTKLVIKKTLAGSDLENCRYVHPVDNRQCPVVIGGDYITTESGTG 457 (794)
Q Consensus 378 ~~~~~~~~~g~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~G~~L~g~~~~~Pl~~~~~pvvi~~~~V~~~~GTG 457 (794)
||. +..||+|+|.+.++.+|||.|++-.+.+..+..- -.|.++ ..++ | ..+.+ ++.|
T Consensus 207 SR~--~~~WGipvP~~~~~v~yVWfDA~~~y~s~~~~~~-----~~~~~~--~~~w-p---~~~~~-~GkD--------- 263 (648)
T PRK12267 207 SRT--SFDWGIPVPFDPKHVVYVWIDALLNYITALGYGS-----DDDELF--KKFW-P---ADVHL-VGKD--------- 263 (648)
T ss_pred CCC--CCCcceECCCCCCCEEEEcccchHHHHHHcCCCC-----CCchHH--Hhhc-c---cceEE-Eeee---------
Confidence 994 5679999999989999999999998877644310 001110 1122 2 11222 2222
Q ss_pred ceeecCCCChhhHHHHHHhCCCccccCCCCCccccccCCCCCccccccchHHHHHHHHhcCCcccccccccccccccCCC
Q 003799 458 LVHTAPGHGQEDYVTSLKYGLPILSPVDDEGKFTEEAGKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTK 537 (794)
Q Consensus 458 ~Vh~aPaHg~~D~~~~~~~gl~i~~~vd~~G~~~~~~~~~~G~~v~~ea~~~ii~~L~~~g~l~~~~~~~h~yp~~WRt~ 537 (794)
+++.|+.---.+....|++ .+...+.|.|
T Consensus 264 ---ii~fH~i~wpa~l~~~~~~-----------------------------------------~p~~v~~hg~------- 292 (648)
T PRK12267 264 ---ILRFHAIYWPIMLMALGLP-----------------------------------------LPKKVFAHGW------- 292 (648)
T ss_pred ---ecchhHHHHHHHHHhCCCC-----------------------------------------CCcEEEecce-------
Confidence 3344444322233333332 2222233333
Q ss_pred CcEEEcccCccccchhhHHHHHHhhhcCeeecCCCCCCCCCCchhhhhhhh-cCCCCceecChHHHHH--HHHHHHHHHh
Q 003799 538 KPTIFRATEQWFASVEGFRQAAMDAIGQVKWVPPQEAPGYGADVLRLWVSS-VDYTGDVMIGPQVLRQ--MSDIYRKLRG 614 (794)
Q Consensus 538 ~pii~r~t~QWfi~~~~~~~~~l~~i~~v~~~P~~~~~~yGaD~lRl~las-~~~~~Di~~s~~~l~~--~~~~~~kl~N 614 (794)
|. +++ +||+++.+|+.+ |.+++++||+|++|||++. .++++|.+|+++.+.. ..++.++|+|
T Consensus 293 ----------l~--~eg--~KMSKS~GN~i~-p~d~l~~ygaD~lR~~L~~~~~~~~D~~fs~~~~~~~~n~~l~~~lgN 357 (648)
T PRK12267 293 ----------WL--MKD--GKMSKSKGNVVD-PEELVDRYGLDALRYYLLREVPFGSDGDFSPEALVERINSDLANDLGN 357 (648)
T ss_pred ----------EE--ECC--ceecccCCcccC-HHHHHHHcCCcHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHhH
Confidence 11 223 789999999988 7778899999999999985 4778999999998854 4567789999
Q ss_pred HHHHHHhcccCCCCCCCcC-CCCCChhhHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhHHHHHhhcccccc
Q 003799 615 TLRYLLGNLHDWRVGNSIS-YDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRLYT 693 (794)
Q Consensus 615 t~rfll~nl~~~~~~~~~~-~~~l~~~D~~il~~l~~lv~~v~~~~e~y~f~~ai~~l~~f~~~~lsn~Yle~~K~rly~ 693 (794)
.+.+++..+..+... .++ ...+...|+|++++++++++++.++|++|+|++|++.+++|+. ++|+|++..|||...
T Consensus 358 l~~R~~~~~~~~~~~-~~p~~~~~~~~D~~ll~~l~~~~~~v~~~~e~~~~~~al~~i~~~~~--~~N~Yi~~~kpW~~~ 434 (648)
T PRK12267 358 LLNRTVAMINKYFDG-EIPAPGNVTEFDEELIALAEETLKNYEELMEELQFSRALEEVWKLIS--RANKYIDETAPWVLA 434 (648)
T ss_pred HHHHHHHHHHHhcCC-cCCCCCCCchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH--HHHHHHHhCCChhhh
Confidence 887766655543221 222 2345678999999999999999999999999999999999985 799999999998654
Q ss_pred CC-CChHhHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhCCC
Q 003799 694 GG-TTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPF 736 (794)
Q Consensus 694 ~~-~d~~~r~s~~~vL~~iL~~l~~lLaP~~P~~aEEiw~~L~~ 736 (794)
.. .+..+.+++..+++++++.++++|+|||||+||+||++|+.
T Consensus 435 ~~~~~~~~~~~~l~~~~~~l~~~~~lL~P~~P~~ae~i~~~Lg~ 478 (648)
T PRK12267 435 KDEGKKERLATVMYHLAESLRKVAVLLSPFMPETSKKIFEQLGL 478 (648)
T ss_pred cCcccHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHcCC
Confidence 43 23334456677888899999999999999999999999985
No 34
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.5e-55 Score=523.46 Aligned_cols=450 Identities=20% Similarity=0.231 Sum_probs=331.9
Q ss_pred CcEEEEcCCCCCCCcccchHHHhHHHHHHHHHHHHhCCCeeEEeccccCCCchHHHHHHhhchhhhhcCCCHHHHHHHHH
Q 003799 150 ENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKAA 229 (794)
Q Consensus 150 ~~f~i~~~pPy~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G~D~hGlpie~~~~k~~~~~~~~~~~~~~~~~~~~ 229 (794)
++|+|++|||||||.+||||+++++++|+++||+||+|++|.|++|||+||+||+.+++ +.+.+|.++
T Consensus 2 ~~~~itt~~py~ng~~HiGH~~~~l~aDv~aR~~r~~G~~V~~~~g~D~hG~~i~~~A~-------~~g~~p~e~----- 69 (673)
T PRK00133 2 RKILVTCALPYANGPIHLGHLVEYIQADIWVRYQRMRGHEVLFVCADDAHGTPIMLKAE-------KEGITPEEL----- 69 (673)
T ss_pred CCEEEeCCCCCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEeCccCCCChHHHHHHH-------HcCCCHHHH-----
Confidence 46999999999999999999999999999999999999999999999999999999998 457788766
Q ss_pred HHHHHHHHHHHHHHHHcCCccCCCCccccCChHHHHHHHHHHHHHHHcCCeeecccCceeccCCCccccccccccCCccc
Q 003799 230 KFAKATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAEAELEYPEGHV 309 (794)
Q Consensus 230 ~~a~~~~~~~~~~~~~lGi~~dwd~~~~T~d~~~~~~v~~~f~~L~~kGlIy~~~~~v~w~~~~~t~Lae~Evey~e~~~ 309 (794)
|+++.+.+++++++||| ++|.+++|+++.|.+.++++|.+|+++|+||++.++|+||+.|+++|+|.+|+ |.|
T Consensus 70 --~~~~~~~~~~~~~~l~i--~~d~f~rtt~~~h~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~v~---g~c 142 (673)
T PRK00133 70 --IARYHAEHKRDFAGFGI--SFDNYGSTHSEENRELAQEIYLKLKENGYIYEKTIEQLYDPEKGMFLPDRFVK---GTC 142 (673)
T ss_pred --HHHHHHHHHHHHHHhCC--CCCCCccCCcHHHHHHHHHHHHHHHHCCCEEEeeeEEEEeCCCCCCccchhee---ccc
Confidence 89999999999999999 67789999999999999999999999999999999999999999999999986 445
Q ss_pred ccccce---------------------------------------eEEeccCCCCcccccccccCCccceec-cCCCCcc
Q 003799 310 SRSIYA---------------------------------------VFRMVSAPPSTSGLLNEFLPDLGLAVW-TTTPWTV 349 (794)
Q Consensus 310 ~~~~~v---------------------------------------~F~l~~~~~~~~~~l~~~~~~~~l~iw-TT~PwTi 349 (794)
+.|.+. +|+++++++.+ .-| .+.|. +
T Consensus 143 p~C~~~d~~g~~ce~cg~~~~~~~l~~~~~~~~g~~~e~~~~~~~f~~l~~~~~~l-------------~~~~~~~~~-~ 208 (673)
T PRK00133 143 PKCGAEDQYGDNCEVCGATYSPTELINPKSAISGATPVLKESEHFFFKLPRFEEFL-------------KEWITRSGE-L 208 (673)
T ss_pred CCCCCcccCCchhhhccccCChHhhcCCccccCCCcceEEecceEEEEHHHHHHHH-------------HHHHhcCCC-C
Confidence 444432 12222211111 111 11121 1
Q ss_pred ccccEEEECCCc-ceeeeeecccccCCCCCcCCCCCCC-CCcccCCcceEeeecccchHHHHHhcC-CceEEEeeeccCc
Q 003799 350 PANAAVAVNAKL-QYAVVEIQSLLEGDSAAPANKKSRP-GNVLKDQKKVFIIVASDLVPTLEAKWG-TKLVIKKTLAGSD 426 (794)
Q Consensus 350 ~~n~av~v~p~~-~Y~~v~~~~~~~~~s~~~~~~~~~~-g~~~~~~~~~~~iv~~~~~~~~~~~~~-~~~~~~~~~~G~~ 426 (794)
| |.. .++.--+.+++.|.++||+ ..| |+++|++.++.+|||.|++.++....+ ..-. . .+.+
T Consensus 209 ~--------~~~~~~~~~~l~~~l~d~~ISR~---~~W~GipvP~~~~~~iyVW~dal~~Yl~~~~~~~~~--~--~~~~ 273 (673)
T PRK00133 209 Q--------PNVANKMKEWLEEGLQDWDISRD---APYFGFEIPGAPGKVFYVWLDAPIGYISSTKNLCDK--R--GGLD 273 (673)
T ss_pred C--------HHHHHHHHHHHhCCCcccceeee---CCccceECCCCCCeEEEEcccchhhhhHHHhhhccc--c--cchh
Confidence 2 111 1222223456889999993 679 999999888999999999988765431 1000 0 0000
Q ss_pred ccCCeeecCCCCCcccEEeccCcccccCCCCceee-----cCCCChhhHHHHHHhCCCccccCCCCCccccccCCCCCcc
Q 003799 427 LENCRYVHPVDNRQCPVVIGGDYITTESGTGLVHT-----APGHGQEDYVTSLKYGLPILSPVDDEGKFTEEAGKFSGLD 501 (794)
Q Consensus 427 L~g~~~~~Pl~~~~~pvvi~~~~V~~~~GTG~Vh~-----aPaHg~~D~~~~~~~gl~i~~~vd~~G~~~~~~~~~~G~~ 501 (794)
+ ..++.| +..+=+||. ++.|..-
T Consensus 274 ~--~~~w~~-----------------~~~~~~v~~iGkDi~~fH~i~--------------------------------- 301 (673)
T PRK00133 274 W--DEYWKK-----------------DSDTELYHFIGKDIIYFHTLF--------------------------------- 301 (673)
T ss_pred H--HHhcCC-----------------CCCceEEEEEeecchhHHHHH---------------------------------
Confidence 0 011100 000111221 1222221
Q ss_pred ccccchHHHHHHHHhcCCcccccccccccccccCCCCcEEEcccCccccchhhHHHHHHhhhcCeeecCCCCCCCCCCch
Q 003799 502 VLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTKKPTIFRATEQWFASVEGFRQAAMDAIGQVKWVPPQEAPGYGADV 581 (794)
Q Consensus 502 v~~ea~~~ii~~L~~~g~l~~~~~~~h~yp~~WRt~~pii~r~t~QWfi~~~~~~~~~l~~i~~v~~~P~~~~~~yGaD~ 581 (794)
....|...|..++...+.|.+ |.+ ++ +||+++.+|+.+ |.+++++||+|+
T Consensus 302 --------wpa~l~a~g~~lP~~v~~hg~-----------------v~~--~G--~KMSKS~GNvV~-p~dlie~ygaDa 351 (673)
T PRK00133 302 --------WPAMLEGAGYRLPTNVFAHGF-----------------LTV--EG--AKMSKSRGTFIW-ARTYLDHLDPDY 351 (673)
T ss_pred --------HHHHHHhCCCCCCCEEeeecc-----------------EEe--cC--CcccccCCcccC-HHHHHHHcCchH
Confidence 223455555555544445544 222 34 689999999988 888899999999
Q ss_pred hhhhhhhc-CCC-CceecChHHHHH--HHHHHHHHHhHHHHHHhcccCCCCCCCcCCCCCChhhHHHHHHHHHHHHHHHH
Q 003799 582 LRLWVSSV-DYT-GDVMIGPQVLRQ--MSDIYRKLRGTLRYLLGNLHDWRVGNSISYDDLPMIDQYALFQLENIVKNIRE 657 (794)
Q Consensus 582 lRl~las~-~~~-~Di~~s~~~l~~--~~~~~~kl~Nt~rfll~nl~~~~~~~~~~~~~l~~~D~~il~~l~~lv~~v~~ 657 (794)
+|||+++. ..+ .|.+|+.+.+.. ..+.+++++|.+.++.+.+.+... ..++ ..+.|+|++++++++++++.+
T Consensus 352 lR~~ll~~~~~~~~D~~Fs~~~~~~~~n~~l~~~l~Nl~~R~~~~~~k~~~-~~~~---~~~~d~~ll~~l~~~~~~v~~ 427 (673)
T PRK00133 352 LRYYLAAKLPETIDDLDFNWEDFQQRVNSELVGKVVNFASRTAGFINKRFD-GKLP---DALADPELLEEFEAAAEKIAE 427 (673)
T ss_pred HHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCC---CCcccHHHHHHHHHHHHHHHH
Confidence 99999865 556 799999887643 456788999988776554432111 1122 245699999999999999999
Q ss_pred HHhcccHHHHHHHHHHHHHHhhhHHHHHhhccccccCCCChHhHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhCCC
Q 003799 658 SYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPF 736 (794)
Q Consensus 658 ~~e~y~f~~ai~~l~~f~~~~lsn~Yle~~K~rly~~~~d~~~r~s~~~vL~~iL~~l~~lLaP~~P~~aEEiw~~L~~ 736 (794)
+|++|+|+.|++.+++|+. ++|+|++..|||...+. +..++.++..++.++++.++++|+|||||+||+||++|+.
T Consensus 428 a~e~~~~~~a~~~l~~l~~--~~N~yi~~~kpw~~~~~-~~~~~~~~l~~~~~~l~~l~~lL~Pf~P~~ae~i~~~Lg~ 503 (673)
T PRK00133 428 AYEAREFRKALREIMALAD--FANKYVDDNEPWKLAKQ-DGERLQAVCSVGLNLFRALAIYLKPVLPELAERAEAFLNL 503 (673)
T ss_pred HHHhcCHHHHHHHHHHHHH--HHHHHHHhcCChhhhcC-CHHHHHHHHHHHHHHHHHHHHHhhChhchHHHHHHHHhCC
Confidence 9999999999999999973 89999999999865543 4444556677778889999999999999999999999985
No 35
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.4e-55 Score=515.88 Aligned_cols=487 Identities=19% Similarity=0.224 Sum_probs=325.8
Q ss_pred CcEEEEcCCCCCCCcccchHHHhH-HHHHHHHHHHHhCCCeeEEeccccCCCchHHHHHHhhchhhhhcCCCHHHHHHHH
Q 003799 150 ENFVLHDGPPYANGNLHMGHALNK-ILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKA 228 (794)
Q Consensus 150 ~~f~i~~~pPy~nG~lHiGHa~~~-il~Dii~R~~r~~G~~V~~~~G~D~hGlpie~~~~k~~~~~~~~~~~~~~~~~~~ 228 (794)
++|+|++|||||||.|||||++++ +++|+++||+||+|++|.|++|+||||+||+.+|+ +.+.++.++
T Consensus 3 ~~~~i~~~~py~ng~~HiGH~~~~~~~~D~~~R~~r~~G~~v~~~~g~d~~g~~i~~~a~-------~~g~~~~~~---- 71 (556)
T PRK12268 3 MRILITSAWPYANGPLHLGHLAGSGLPADVFARYQRLKGNEVLFVSGSDEHGTPIELAAK-------KEGVTPQEL---- 71 (556)
T ss_pred CcEEEecCCCCCCCCccccccccchhHHHHHHHHHHhcCCceEecCcCCCcccHHHHHHH-------HcCCCHHHH----
Confidence 579999999999999999999998 99999999999999999999999999999999988 346677655
Q ss_pred HHHHHHHHHHHHHHHHHcCCccCCCCccccCChHHHHHHHHHHHHHHHcCCeeecccCceeccCCCccccccccccCCcc
Q 003799 229 AKFAKATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAEAELEYPEGH 308 (794)
Q Consensus 229 ~~~a~~~~~~~~~~~~~lGi~~dwd~~~~T~d~~~~~~v~~~f~~L~~kGlIy~~~~~v~w~~~~~t~Lae~Evey~e~~ 308 (794)
|+++.+.+.+++++||| ++|.+++|++|.|.+.++++|.+|+++|+||++.++|+|||.|+|+|++++|. |.
T Consensus 72 ---~~~~~~~~~~~~~~l~i--~~d~~~~t~~~~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~~~~l~~~~v~---g~ 143 (556)
T PRK12268 72 ---ADKYHEEHKEDFKKLGI--SYDLFTRTTSPNHHEVVQEFFLKLYENGYIYKKTIEQAYCPSDGRFLPDRYVE---GT 143 (556)
T ss_pred ---HHHHHHHHHHHHHHcCC--cCCCCcCCCCHHHHHHHHHHHHHHHHCCCeEEeeeEEEecCCCCcCcCcccee---cc
Confidence 99999999999999999 78889999999999999999999999999999999999999999999999986 34
Q ss_pred cccccceeEEeccCCCCccccccccc------------CCccceeccCCCCcccc----------ccEEEECCC-cceee
Q 003799 309 VSRSIYAVFRMVSAPPSTSGLLNEFL------------PDLGLAVWTTTPWTVPA----------NAAVAVNAK-LQYAV 365 (794)
Q Consensus 309 ~~~~~~v~F~l~~~~~~~~~~l~~~~------------~~~~l~iwTT~PwTi~~----------n~av~v~p~-~~Y~~ 365 (794)
|+.|.... .+++ .++.+...+ .+..+..-.+.-|-+.= ...+.+-|+ ..-.+
T Consensus 144 cp~c~~~~----~~G~-~ce~cg~~~~~~~l~~p~~~~~~~~~e~~~~~qwF~~l~~~~~~l~~~~~~~~~~p~~~~~~~ 218 (556)
T PRK12268 144 CPYCGYEG----ARGD-QCDNCGALLDPTDLINPRSKISGSTPEFRETEHFFLDLPAFAERLRAWIESSGDWPPNVLNFT 218 (556)
T ss_pred CCCCCCcc----cCCc-hhhhccccCChHHhcCCccccCCCcCeEEecceEEEEhHHHHHHHHHHHhhccCCCHHHHHHH
Confidence 44433100 0000 000000000 00000000001111100 000111111 11001
Q ss_pred ee-ecccccCCCCCcCCCCCCCCCccc--CCcceEeeecccchHHHHHhcCCceEEEeeeccCcccCCeeecCCCCCccc
Q 003799 366 VE-IQSLLEGDSAAPANKKSRPGNVLK--DQKKVFIIVASDLVPTLEAKWGTKLVIKKTLAGSDLENCRYVHPVDNRQCP 442 (794)
Q Consensus 366 v~-~~~~~~~~s~~~~~~~~~~g~~~~--~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~G~~L~g~~~~~Pl~~~~~p 442 (794)
.+ ++.++.|.++||++ .||+|+| ...++.++||.+++..+.+..+.-.. ..|. + .
T Consensus 219 ~~~l~~~l~Dw~ISR~~---~WGipiP~~~~~~~~iyvW~da~~~y~~~~~~~~~----~~g~---------~------~ 276 (556)
T PRK12268 219 LNWLKEGLKPRAITRDL---DWGIPVPWPGFEGKVFYVWFDAVIGYISASKEWAE----RTGD---------P------E 276 (556)
T ss_pred HHHHhCCCCCcCceeeC---CCCeeCCCCCCCCcEEEEeehHhhHHHHHHHHHHH----hcCC---------c------h
Confidence 11 23367799999954 3999999 77788999999987666432110000 0000 0 0
Q ss_pred EEeccCcccccCCCCceeecCCCChhhHHHHHHhCCCccccCCCCCccccccCCCCCccccccchHHHHHHHHhcC--Cc
Q 003799 443 VVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPILSPVDDEGKFTEEAGKFSGLDVLGDGNVAVVKYLDEQM--SL 520 (794)
Q Consensus 443 vvi~~~~V~~~~GTG~Vh~aPaHg~~D~~~~~~~gl~i~~~vd~~G~~~~~~~~~~G~~v~~ea~~~ii~~L~~~g--~l 520 (794)
. + .++ ..+.|+-.||.. |+|.- .|.. ......|...| ..
T Consensus 277 ~-~-~~~-w~ds~~~~~~~~-G~D~~---------------------------~Fh~--------~~~p~~l~~~~~~~~ 317 (556)
T PRK12268 277 A-W-KEF-WLDPETKSYYFI-GKDNI---------------------------PFHS--------IIWPAMLLGSGEPLK 317 (556)
T ss_pred H-H-HHH-hCCCCCeEEEEE-eeccC---------------------------cchH--------HHHHHHHHhcCCCCC
Confidence 0 0 001 011222122222 00000 0110 01112333333 11
Q ss_pred ccccccccccccccCCCCcEEEcccCccccchhhHHHHHHhhhcCeeecCCCCCCCCCCchhhhhhhhc-CCCCceecCh
Q 003799 521 IMEEPYEHKYPYDWRTKKPTIFRATEQWFASVEGFRQAAMDAIGQVKWVPPQEAPGYGADVLRLWVSSV-DYTGDVMIGP 599 (794)
Q Consensus 521 ~~~~~~~h~yp~~WRt~~pii~r~t~QWfi~~~~~~~~~l~~i~~v~~~P~~~~~~yGaD~lRl~las~-~~~~Di~~s~ 599 (794)
.+...+.| .|. .+++ +||+++.+|+.+ |.+++++||+|++|||+++. ....|++|++
T Consensus 318 ~P~~v~~~------------------G~v-~~~G--~KMSKS~GN~I~-p~dli~~yGaDalR~~ll~~~~~~~d~~f~~ 375 (556)
T PRK12268 318 LPDEIVSS------------------EYL-TLEG--GKFSKSRGWGIW-VDDALERYPPDYLRYYLAANAPENSDTDFTW 375 (556)
T ss_pred CCCEeecc------------------CCE-EECC--eeeccCCCcccC-HHHHHHHcCcHHHHHHHHhcCCCCCCCCCCH
Confidence 11111122 222 2344 799999999987 88889999999999999866 5668999999
Q ss_pred HHHHH--HHHHHHHHHhHHHHHHhcccCCCCCCCcCCCCCChhhHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Q 003799 600 QVLRQ--MSDIYRKLRGTLRYLLGNLHDWRVGNSISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIV 677 (794)
Q Consensus 600 ~~l~~--~~~~~~kl~Nt~rfll~nl~~~~~~~~~~~~~l~~~D~~il~~l~~lv~~v~~~~e~y~f~~ai~~l~~f~~~ 677 (794)
+.+.. ..+.+++++|.+.++...+.+... ...+...+...|+|++++++++++.++++|++|+|+.|++.+++|+.
T Consensus 376 ~~~~~~~~~~~~~~l~n~~~r~~~~~~~~~~-~~~~~~~~~~~d~~ll~~l~~~~~~v~~~~~~~~~~~a~~~l~~~~~- 453 (556)
T PRK12268 376 EEFVRRVNSELADKYGNLVNRVLSFIEKYFG-GIVPPGELGDEDRELIAEAEALFKEVGELLEAGEFKKALEEIMELAR- 453 (556)
T ss_pred HHHHHHHhHHhhhhHHHHHHHHHHHHHHhcC-CcCCCCcCCcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-
Confidence 87754 456778888875544332221100 11222345778999999999999999999999999999999999983
Q ss_pred hhhHHHHHhhccccccCCCChHhHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhCCCCccccCCCCCCceeecCCCCC
Q 003799 678 DLSNFYFDVAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAAEFVFESKWPVL 757 (794)
Q Consensus 678 ~lsn~Yle~~K~rly~~~~d~~~r~s~~~vL~~iL~~l~~lLaP~~P~~aEEiw~~L~~~~~~~~~~~~~sV~~~~wP~~ 757 (794)
++|+|++..|+|.+.+. +......+..++.++|+.++++|+|||||+|||||++|+. +++..+.||..
T Consensus 454 -~~n~yi~~~kpw~~~~~-~~~~~~~~l~~~~~~l~~~~~lL~P~~P~~aeei~~~Lg~----------~~~~~~~w~~~ 521 (556)
T PRK12268 454 -EANKYLDEKAPWKLAKT-DRERAATVLYTALNLVRLLAVLLYPFLPFSAQKIWEMLGG----------ENIEKLTWESL 521 (556)
T ss_pred -HHHHHHHcCCChhhhcC-CHHHHHHHHHHHHHHHHHHHHHhhCccchHHHHHHHHhCC----------CCCcccchhhh
Confidence 89999999999976652 3333344555566788999999999999999999999974 23556677754
No 36
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=100.00 E-value=5.6e-55 Score=508.11 Aligned_cols=467 Identities=22% Similarity=0.265 Sum_probs=329.0
Q ss_pred EEEEcCCCCCCCcccchHHHhHHHHHHHHHHHHhCCCeeEEeccccCCCchHHHHHHhhchhhhhcCCCHHHHHHHHHHH
Q 003799 152 FVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKAAKF 231 (794)
Q Consensus 152 f~i~~~pPy~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G~D~hGlpie~~~~k~~~~~~~~~~~~~~~~~~~~~~ 231 (794)
|+|++|||||||.|||||+++++++|+++||+||+|++|.+++|+|+||+||+.+++ +++.+|.++
T Consensus 1 ~~it~~~P~~ng~lHiGH~~~~~~aDvl~R~~r~~G~~V~~v~g~D~~g~~i~~~a~-------~~g~~~~e~------- 66 (530)
T TIGR00398 1 ILITTALPYANGKPHLGHAYTTILADVYARYKRLRGYEVLFVCGTDEHGTKIELKAE-------QEGLTPKEL------- 66 (530)
T ss_pred CEEecCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCeEEEecccCCCCcHHHHHHH-------HcCCCHHHH-------
Confidence 688999999999999999999999999999999999999999999999999999987 456777765
Q ss_pred HHHHHHHHHHHHHHcCCccCCCCccccCChHHHHHHHHHHHHHHHcCCeeecccCceeccCCCccccccccccCCccccc
Q 003799 232 AKATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAEAELEYPEGHVSR 311 (794)
Q Consensus 232 a~~~~~~~~~~~~~lGi~~dwd~~~~T~d~~~~~~v~~~f~~L~~kGlIy~~~~~v~w~~~~~t~Lae~Evey~e~~~~~ 311 (794)
++++.+.+++++++||| ++|.+++|+++.|.+.++++|.+|+++|+||++.++|+||+.|+|+|+|.+|+ |.|+.
T Consensus 67 ~~~~~~~~~~~l~~LgI--~~D~~~~t~~~~~~~~v~~~~~~L~~kG~iY~~~~~v~~~~~~~~~l~~~~v~---g~cp~ 141 (530)
T TIGR00398 67 VDKYHEEFKDDWKWLNI--SFDRFIRTTDEEHKEIVQKIFQKLKENGYIYEKEIKQLYCPECEMFLPDRYVE---GTCPK 141 (530)
T ss_pred HHHHHHHHHHHHHHhCC--CCCCCccCCCHHHHHHHHHHHHHHHHCCCEEEeeeEEEecCCCCcCCchhhhc---CCCCC
Confidence 88999999999999999 67788999999999999999999999999999999999999999999999986 44544
Q ss_pred ccceeEEeccCCCCcccccccccCCc-----cceeccCCCCccccccEE-------------------E-ECCCc--cee
Q 003799 312 SIYAVFRMVSAPPSTSGLLNEFLPDL-----GLAVWTTTPWTVPANAAV-------------------A-VNAKL--QYA 364 (794)
Q Consensus 312 ~~~v~F~l~~~~~~~~~~l~~~~~~~-----~l~iwTT~PwTi~~n~av-------------------~-v~p~~--~Y~ 364 (794)
|.+.. .....++.+....... .....-+.|+...-.+.. . .-|+. .+.
T Consensus 142 c~~~~-----~~g~~ce~cg~~~~~~~l~~p~~~~~~~~~e~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 216 (530)
T TIGR00398 142 CGSED-----ARGDHCEVCGRHLEPTELINPRCKICGAKPELRDSEHYFFRLSAFEKELEEWIRKNPESGSPASNVKNKA 216 (530)
T ss_pred CCCcc-----cccchhhhccccCCHHHhcCCccccCCCcceEEecceEEEEhHHHHHHHHHHHHhCCccCCCcHHHHHHH
Confidence 43310 0000000000000000 000000111111100000 0 00111 111
Q ss_pred eeeecccccCCCCCcCCCCCCCCCcccCCcceEeeecccchHHHHHhcCCceEEEeeeccCcccCCeeecCCCCCcccEE
Q 003799 365 VVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFIIVASDLVPTLEAKWGTKLVIKKTLAGSDLENCRYVHPVDNRQCPVV 444 (794)
Q Consensus 365 ~v~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~G~~L~g~~~~~Pl~~~~~pvv 444 (794)
.--+++++.|.++||+.. .||+++|...++.++||.|++..+....+. ..|..-....++ |-
T Consensus 217 ~~~l~~~l~d~~iSR~~~--~WGipvP~~~~~~~yvW~da~~~y~~~~~~-------~~~~~~~~~~~w-~~-------- 278 (530)
T TIGR00398 217 QNWLKGGLKDLAITRDLV--YWGIPVPNDPNKVVYVWFDALIGYISSLGI-------LSGDTEDWKKWW-NN-------- 278 (530)
T ss_pred HHHHhCCCCCccccCcCC--CCCeeCCCCCCcEEEEeecchHHhHhhhcc-------ccCChhhHHHhC-CC--------
Confidence 111245588999999653 499999999889999999998766543211 001000000111 11
Q ss_pred eccCcccccCCCCceee-----cCCCChhhHHHHHHhCCCccccCCCCCccccccCCCCCccccccchHHHHHHHHhcCC
Q 003799 445 IGGDYITTESGTGLVHT-----APGHGQEDYVTSLKYGLPILSPVDDEGKFTEEAGKFSGLDVLGDGNVAVVKYLDEQMS 519 (794)
Q Consensus 445 i~~~~V~~~~GTG~Vh~-----aPaHg~~D~~~~~~~gl~i~~~vd~~G~~~~~~~~~~G~~v~~ea~~~ii~~L~~~g~ 519 (794)
+ .++-+||. ++.|..-.- ..|...|.
T Consensus 279 ---~-----~~~~~v~~~G~Di~~~h~~~~~-----------------------------------------a~l~~~~~ 309 (530)
T TIGR00398 279 ---D-----EDAELIHFIGKDIVRFHTIYWP-----------------------------------------AMLMGLGL 309 (530)
T ss_pred ---C-----CCceEEEEEecccchhHHHHHH-----------------------------------------HHHHhCCC
Confidence 0 00111111 122222111 23333332
Q ss_pred cccccccccccccccCCCCcEEEcccCccccchhhHHHHHHhhhcCeeecCCCCCCCCCCchhhhhhhhc-CCCCceecC
Q 003799 520 LIMEEPYEHKYPYDWRTKKPTIFRATEQWFASVEGFRQAAMDAIGQVKWVPPQEAPGYGADVLRLWVSSV-DYTGDVMIG 598 (794)
Q Consensus 520 l~~~~~~~h~yp~~WRt~~pii~r~t~QWfi~~~~~~~~~l~~i~~v~~~P~~~~~~yGaD~lRl~las~-~~~~Di~~s 598 (794)
......+.|.+ +..++ +||+++.+|+.+ |.+++++||+|++|||+++. +..+|++|+
T Consensus 310 ~~~~~~~~~g~-------------------v~~~g--~KmSKS~Gn~i~-~~d~i~~~g~D~lR~~l~~~~~~~~d~~f~ 367 (530)
T TIGR00398 310 PLPTQVFSHGY-------------------LTVEG--GKMSKSLGNVVD-PSDLLARFGADILRYYLLKERPLGKDGDFS 367 (530)
T ss_pred CCCCEEEeecc-------------------EEECC--ceecccCCceec-HHHHHHHcCchHHHHHHhhCCCCCCCCCCC
Confidence 22233333322 22223 789999999988 77788899999999999975 578899999
Q ss_pred hHHHHHH--HHHHHHHHhHHHHHHhcccCCCCCCCcCC-CCCChhhHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Q 003799 599 PQVLRQM--SDIYRKLRGTLRYLLGNLHDWRVGNSISY-DDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFI 675 (794)
Q Consensus 599 ~~~l~~~--~~~~~kl~Nt~rfll~nl~~~~~~~~~~~-~~l~~~D~~il~~l~~lv~~v~~~~e~y~f~~ai~~l~~f~ 675 (794)
++.++.. .+.+++++|+++++++.+.+... ..++. ......|+|++++++++++.++++|++|+|+.|++.+++|+
T Consensus 368 ~~~l~~~~n~~l~~~l~n~~~r~~~~~~~~~~-~~~~~~~~~~~~d~~ll~~l~~~~~~v~~a~e~~~~~~a~~~l~~l~ 446 (530)
T TIGR00398 368 WEDFVERVNADLANKLGNLLNRTLGFIKKYFN-GVLPSEDITDEEDKKLLKLINEALEQIDEAIESFEFRKALREIMKLA 446 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CcCCCCcccchhhHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 9998776 56789999998776665543211 11221 23457899999999999999999999999999999999998
Q ss_pred HHhhhHHHHHhhccccccCCCChHhHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhCCC
Q 003799 676 IVDLSNFYFDVAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPF 736 (794)
Q Consensus 676 ~~~lsn~Yle~~K~rly~~~~d~~~r~s~~~vL~~iL~~l~~lLaP~~P~~aEEiw~~L~~ 736 (794)
. ++|+|++.+|||.+.++ +.+++++++++.++++.++++|+|||||+|||||++|+.
T Consensus 447 ~--~~n~Yi~~~kpw~~~~~--~~~~~~~~~~l~~~l~~l~~ll~P~~P~~ae~i~~~L~~ 503 (530)
T TIGR00398 447 D--RGNKYIDENKPWELFKQ--SPRLKELLAVCSMLIRVLSILLYPIMPKLSEKILKFLNF 503 (530)
T ss_pred H--HHHHHHhcCCChhhcCC--hHHHHHHHHHHHHHHHHHHHHHhCcccHHHHHHHHHhCC
Confidence 4 89999999999988753 235778899999999999999999999999999999984
No 37
>KOG0436 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.1e-55 Score=458.77 Aligned_cols=466 Identities=19% Similarity=0.217 Sum_probs=358.7
Q ss_pred CCCcEEEEcCCCCCCCcccchHHHhHHHHHHHHHHHHhCCCeeEEeccccCCCchHHHHHHhhchhhhhcCCCHHHHHHH
Q 003799 148 DGENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAK 227 (794)
Q Consensus 148 ~~~~f~i~~~pPy~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G~D~hGlpie~~~~k~~~~~~~~~~~~~~~~~~ 227 (794)
+++.|++|+|.-|+|..+||||+++.++.|+|+|||+++|..|.|..|+|+||++|+..++ ..+.+|.++
T Consensus 37 ~~~~~~lTTPifYvNAaPHlGhlYS~llaDai~R~q~lkg~~v~fsTGTDEHGlKIqtaaa-------tnG~~P~e~--- 106 (578)
T KOG0436|consen 37 EGETFVLTTPIFYVNAAPHLGHLYSTLLADAIARFQRLKGKKVIFSTGTDEHGLKIQTAAA-------TNGRNPPEL--- 106 (578)
T ss_pred CCceeEEecceeecCCCcchhHHHHHHHHHHHHHHHhhcCCceEeecCCCccchhhhhhHh-------hcCCChHHH---
Confidence 4579999999999999999999999999999999999999999999999999999999887 567889887
Q ss_pred HHHHHHHHHHHHHHHHHHcCCccCCCCccccCChHHHHHHHHHHHHHHHcCCeeecccCceeccCCCccccccccccCCc
Q 003799 228 AAKFAKATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAEAELEYPEG 307 (794)
Q Consensus 228 ~~~~a~~~~~~~~~~~~~lGi~~dwd~~~~T~d~~~~~~v~~~f~~L~~kGlIy~~~~~v~w~~~~~t~Lae~Evey~e~ 307 (794)
|++..+.+++.++.+|| .++++++|+||.|++.|++++..+.++|+||++.+..|||.+|+|++.|++|.. .
T Consensus 107 ----cDr~s~~f~qL~k~~gi--~yt~FIRTTdpkH~a~Vqefw~~~~knG~iy~g~~eGwYcvsdEtf~pEskv~k--~ 178 (578)
T KOG0436|consen 107 ----CDRISQSFRQLWKDAGI--AYTKFIRTTDPKHEAIVQEFWARVFKNGDIYRGDYEGWYCVSDETFYPESKVLK--N 178 (578)
T ss_pred ----HhhhhHHHHHHHHHhCc--chhheeecCCchHHHHHHHHHHHHHhCCceeeecccceEeccccccCCHHHHhc--C
Confidence 88889999999999999 899999999999999999999999999999999999999999999999999873 2
Q ss_pred ccccccc----------------eeEEeccCCCCcccccccccCCccceeccCCCCccccccEEEECCC--cceeeeeec
Q 003799 308 HVSRSIY----------------AVFRMVSAPPSTSGLLNEFLPDLGLAVWTTTPWTVPANAAVAVNAK--LQYAVVEIQ 369 (794)
Q Consensus 308 ~~~~~~~----------------v~F~l~~~~~~~~~~l~~~~~~~~l~iwTT~PwTi~~n~av~v~p~--~~Y~~v~~~ 369 (794)
.|++..+ ..|.|+.+++.+.+++.+ .|. +|.|. +.-++-+.+
T Consensus 179 p~~~gk~vsmEsg~~vv~~kE~NY~FrLSkfqk~l~d~lrk------------NP~--------fvqPs~~~~qVl~~lk 238 (578)
T KOG0436|consen 179 PCPPGKVVSMESGNPVVWRKEDNYFFRLSKFQKPLEDHLRK------------NPR--------FVQPSYFHNQVLSWLK 238 (578)
T ss_pred CCCCCceeeeccCCceeEecccceeeeHHhhhhHHHHHHhc------------CCC--------ccCchHHHHHHHHHHH
Confidence 2332222 258888877766555442 111 23344 234455667
Q ss_pred ccccCCCCCcCCCCCCCCCcccCCcceEeeecccchHHHHHhcCCceEEEeeeccCcccCCeeecCCCCCcccEEeccCc
Q 003799 370 SLLEGDSAAPANKKSRPGNVLKDQKKVFIIVASDLVPTLEAKWGTKLVIKKTLAGSDLENCRYVHPVDNRQCPVVIGGDY 449 (794)
Q Consensus 370 ~~~~~~s~~~~~~~~~~g~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~G~~L~g~~~~~Pl~~~~~pvvi~~~~ 449 (794)
.++.|+||||+++++.||||+|+++.+++|||.|++-++.+.+|...+. ...+++-..|. | ..++| |+.|
T Consensus 239 tglpDlSISRpsarl~WGIPvP~ddsQtIYVWfDAL~nYiSvig~~~~~-~N~k~~ls~~w----P---at~Hv-IGKD- 308 (578)
T KOG0436|consen 239 TGLPDLSISRPSARLDWGIPVPGDDSQTIYVWFDALLNYISVIGYPNKQ-QNLKTALSFGW----P---ATLHV-IGKD- 308 (578)
T ss_pred cCCCcccccChhhhcccCCCCCCCCcceEEEeHHHHhhHHHhhcCCchh-ccccceeecCC----C---ceeee-hhhh-
Confidence 8899999999999999999999999999999999999999887753211 01112111121 2 23344 4333
Q ss_pred ccccCCCCceeecCCCChhhHHHHHHhCCCccccCCCCCccccccCCCCCccccccchHHHHHHHHhcCCcccccccccc
Q 003799 450 ITTESGTGLVHTAPGHGQEDYVTSLKYGLPILSPVDDEGKFTEEAGKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHK 529 (794)
Q Consensus 450 V~~~~GTG~Vh~aPaHg~~D~~~~~~~gl~i~~~vd~~G~~~~~~~~~~G~~v~~ea~~~ii~~L~~~g~l~~~~~~~h~ 529 (794)
++-.|....-.+++..|||++.-|-.+|+||.+
T Consensus 309 -----------IlrFHavYWPafLmaAGlplP~~I~vHghwt~n------------------------------------ 341 (578)
T KOG0436|consen 309 -----------ILRFHAVYWPAFLMAAGLPLPKMIFVHGHWTKN------------------------------------ 341 (578)
T ss_pred -----------hhhhhhhhhHHHHHhcCCCCccEEEEeeeeeec------------------------------------
Confidence 344555555556666666655544444444432
Q ss_pred cccccCCCCcEEEcccCccccchhhHHHHHHhhhcCeeecCCCCCCCCCCchhhhhhh-hcCCCCceecChHHHHHHH--
Q 003799 530 YPYDWRTKKPTIFRATEQWFASVEGFRQAAMDAIGQVKWVPPQEAPGYGADVLRLWVS-SVDYTGDVMIGPQVLRQMS-- 606 (794)
Q Consensus 530 yp~~WRt~~pii~r~t~QWfi~~~~~~~~~l~~i~~v~~~P~~~~~~yGaD~lRl~la-s~~~~~Di~~s~~~l~~~~-- 606 (794)
. .||.++++||.. |-+++.+||+|++|||++ .+.+++|.+|+++.+....
T Consensus 342 --------g------------------mKMsKSLGNvvd-P~~l~~kygvD~vRyflLr~~~l~~Dgdy~eekl~k~~n~ 394 (578)
T KOG0436|consen 342 --------G------------------MKMSKSLGNVVD-PFELVQKYGVDAVRYFLLREGELGNDGDYSEEKLIKIVNA 394 (578)
T ss_pred --------c------------------eecchhhccccC-HHHHHHHhCccceeeEeeeccccCCCCCccHHHHHHHHHH
Confidence 1 678899999887 888889999999999988 5688999999998876554
Q ss_pred HHHHHHHhHHHHHHh---cccCCCCCCCcCCCCCChhhHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhHHH
Q 003799 607 DIYRKLRGTLRYLLG---NLHDWRVGNSISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFY 683 (794)
Q Consensus 607 ~~~~kl~Nt~rfll~---nl~~~~~~~~~~~~~l~~~D~~il~~l~~lv~~v~~~~e~y~f~~ai~~l~~f~~~~lsn~Y 683 (794)
...+++.|.+.++++ |..+..+.-..+.......+.-+.+.++++.+.+.+.|+++.+.+|++++.+.++ -.|-|
T Consensus 395 ~La~~lG~LlnRc~gkkln~sn~e~~l~~~s~~v~ae~~~lv~~v~kl~ev~a~~~d~f~~~~ale~V~si~n--~~ntl 472 (578)
T KOG0436|consen 395 HLANTLGNLLNRCLGKKLNISNCESTLVVDSPTVAAEGEPLVDTVEKLPEVAATNYDNFSLYSALEAVLSIGN--AGNTL 472 (578)
T ss_pred HHHHHHHHHHHHHhhcccChhccccccccCCcchhhccchHHHHHHHhHHHHHhhcccccHHHHHHHHHHHHH--hhhhh
Confidence 556788888877776 2222222111111122345667889999999999999999999999999999887 58999
Q ss_pred HHhhccccccC-CCCh-HhHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhCCCC
Q 003799 684 FDVAKDRLYTG-GTTS-FTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFA 737 (794)
Q Consensus 684 le~~K~rly~~-~~d~-~~r~s~~~vL~~iL~~l~~lLaP~~P~~aEEiw~~L~~~ 737 (794)
++..+||.... ++++ +.......+..++|+.+.++|+||+|.++.+++++|+..
T Consensus 473 vq~~aPWkl~~dsq~~~~~la~~~~~~le~lrv~~illqpv~Psls~~llsqlgvs 528 (578)
T KOG0436|consen 473 VQQRAPWKLFKDSQVSAEELAKVLHIILEVLRVIGILLQPVAPSLSLRLLSQLGVS 528 (578)
T ss_pred hhhcCCceeccccCccHHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHcCCC
Confidence 99999996443 2322 223334445667899999999999999999999999864
No 38
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.1e-51 Score=479.08 Aligned_cols=456 Identities=20% Similarity=0.233 Sum_probs=325.2
Q ss_pred CcEEEEcCCCCCCCcccchHHHhHHHHHHHHHHHHhCCCeeEEeccccCCCchHHHHHHhhchhhhhcCCCHHHHHHHHH
Q 003799 150 ENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKAA 229 (794)
Q Consensus 150 ~~f~i~~~pPy~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G~D~hGlpie~~~~k~~~~~~~~~~~~~~~~~~~~ 229 (794)
++|+|++|||||||.+||||+++++++|+++||+||+|++|.+++|+|+||.||+.+++ +.+.+|.++
T Consensus 1 ~~~~i~~~~P~~~g~~HiGh~~~~~~~Dv~~R~~r~~G~~v~~v~g~dd~g~~i~~~a~-------~~g~~~~~~----- 68 (511)
T PRK11893 1 KKFYITTPIYYPNGKPHIGHAYTTLAADVLARFKRLRGYDVFFLTGTDEHGQKIQRKAE-------EAGISPQEL----- 68 (511)
T ss_pred CCEEEecCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCcEEecCCCCCCChHHHHHHH-------HcCCCHHHH-----
Confidence 47999999999999999999999999999999999999999999999999999998876 456777665
Q ss_pred HHHHHHHHHHHHHHHHcCCccCCCCccccCChHHHHHHHHHHHHHHHcCCeeecccCceeccCCCccccccccccCCccc
Q 003799 230 KFAKATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAEAELEYPEGHV 309 (794)
Q Consensus 230 ~~a~~~~~~~~~~~~~lGi~~dwd~~~~T~d~~~~~~v~~~f~~L~~kGlIy~~~~~v~w~~~~~t~Lae~Evey~e~~~ 309 (794)
|+.+.+.++++|++||| ++|.++.|+++.|.+.++++|.+|+++|+||++.++|+||++|+++|+++|+..+..+|
T Consensus 69 --~~~~~~~~~~~l~~l~I--~~D~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~~~~~~~~~~~l~~~~l~~~~p~~ 144 (511)
T PRK11893 69 --ADRNSAAFKRLWEALNI--SYDDFIRTTDPRHKEAVQEIFQRLLANGDIYLGKYEGWYCVRCEEFYTESELIEDGYRC 144 (511)
T ss_pred --HHHHHHHHHHHHHHhCC--CcCCceeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeeeccccccccCCHHHhcCCCCCC
Confidence 88899999999999999 78889999999999999999999999999999999999999999999999987321245
Q ss_pred ccccc---------eeEEeccCCCCcccccccccCCccceeccCCCCccccccEEEECCCcc--eeeeeecccccCCCCC
Q 003799 310 SRSIY---------AVFRMVSAPPSTSGLLNEFLPDLGLAVWTTTPWTVPANAAVAVNAKLQ--YAVVEIQSLLEGDSAA 378 (794)
Q Consensus 310 ~~~~~---------v~F~l~~~~~~~~~~l~~~~~~~~l~iwTT~PwTi~~n~av~v~p~~~--Y~~v~~~~~~~~~s~~ 378 (794)
..|.- ..|+++...+.+.+.+++ .|.. +.|+.. ...--...++.|..+|
T Consensus 145 ~~~~~~~~~~~~~~~f~~l~~~~~~l~~~~~~------------~~~~--------~~p~~~~~~~~~~l~~~~~D~~is 204 (511)
T PRK11893 145 PPTGAPVEWVEEESYFFRLSKYQDKLLELYEA------------NPDF--------IQPASRRNEVISFVKSGLKDLSIS 204 (511)
T ss_pred CCCCCcceEEecCeEEEEcHHHHHHHHHHHHh------------CCCc--------cCCHHHHHHHHHHHHCCCCCcccC
Confidence 55542 246665443322221110 0110 112210 0000123346788888
Q ss_pred cCCCCCCCCCcccCCcceEeeecccchHHHHHhcCCceEEEeeecc--CcccCCeeecCCCCCcccEEeccCcccccCCC
Q 003799 379 PANKKSRPGNVLKDQKKVFIIVASDLVPTLEAKWGTKLVIKKTLAG--SDLENCRYVHPVDNRQCPVVIGGDYITTESGT 456 (794)
Q Consensus 379 ~~~~~~~~g~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~G--~~L~g~~~~~Pl~~~~~pvvi~~~~V~~~~GT 456 (794)
| +...||+++|.+.++.++||.+++-.+...++...+ -.+ .+. ..++ |. ++.+ .+-|
T Consensus 205 R--~~~~WGipiP~~~~~~~~vWfda~~~y~s~~~~p~~----~~~~~~~~--~~~~-~~---D~~~-~G~D-------- 263 (511)
T PRK11893 205 R--TNFDWGIPVPGDPKHVIYVWFDALTNYLTALGYPDD----EELLAELF--NKYW-PA---DVHL-IGKD-------- 263 (511)
T ss_pred C--CCCCCCccCCCCCCceEEEEecCcHHHHhHhccccc----cccchhHH--HhcC-CC---cceE-eccc--------
Confidence 8 235799999998889999999987776654332110 000 000 0000 10 0000 1111
Q ss_pred CceeecCCCChhhHHHHHHhCCCccccCCCCCccccccCCCCCccccccchHHHHHHHHhcCCcccccccccccccccCC
Q 003799 457 GLVHTAPGHGQEDYVTSLKYGLPILSPVDDEGKFTEEAGKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRT 536 (794)
Q Consensus 457 G~Vh~aPaHg~~D~~~~~~~gl~i~~~vd~~G~~~~~~~~~~G~~v~~ea~~~ii~~L~~~g~l~~~~~~~h~yp~~WRt 536 (794)
.++.|...-..++... |...+...+.|
T Consensus 264 ----~~~~h~~~~~a~~~a~-----------------------------------------~~~~p~~~~~~-------- 290 (511)
T PRK11893 264 ----ILRFHAVYWPAFLMAA-----------------------------------------GLPLPKRVFAH-------- 290 (511)
T ss_pred ----ccccchhHHHHHHHhC-----------------------------------------CCCCCCEEEee--------
Confidence 1122222211111111 11111111111
Q ss_pred CCcEEEcccCccccchhhHHHHHHhhhcCeeecCCCCCCCCCCchhhhhhhhc-CCCCceecChHHHHHH--HHHHHHHH
Q 003799 537 KKPTIFRATEQWFASVEGFRQAAMDAIGQVKWVPPQEAPGYGADVLRLWVSSV-DYTGDVMIGPQVLRQM--SDIYRKLR 613 (794)
Q Consensus 537 ~~pii~r~t~QWfi~~~~~~~~~l~~i~~v~~~P~~~~~~yGaD~lRl~las~-~~~~Di~~s~~~l~~~--~~~~~kl~ 613 (794)
+ |+..++ +||+++.+|+.+ |.+++++||+|++|||+++. .+.+|++|+++.+... .++.++++
T Consensus 291 ----------g-~v~~~G--~KMSKS~GN~i~-~~dll~~~g~DalR~~ll~~~~~~~d~~Fs~~~~~~~~~~~l~~~l~ 356 (511)
T PRK11893 291 ----------G-FLTLDG--EKMSKSLGNVID-PFDLVDEYGVDAVRYFLLREIPFGQDGDFSREAFINRINADLANDLG 356 (511)
T ss_pred ----------c-cEEECC--eeecccCCcEEc-HHHHHHHcCcHHHHHHHHhcCCCCcCCCCCHHHHHHHHHHHHHHHHH
Confidence 1 222344 799999999998 56688899999999999876 7789999999998653 34556788
Q ss_pred hHHHHHHhccc----CCCCCCCcCCCCCChhhHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhHHHHHhhcc
Q 003799 614 GTLRYLLGNLH----DWRVGNSISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKD 689 (794)
Q Consensus 614 Nt~rfll~nl~----~~~~~~~~~~~~l~~~D~~il~~l~~lv~~v~~~~e~y~f~~ai~~l~~f~~~~lsn~Yle~~K~ 689 (794)
|.+..+...+. +..|. ...+...|+|++++++++++.+.++|++|+|+.|++.+++|+. .+|+|++..||
T Consensus 357 n~~~r~~~~~~~~~~~~~~~----~~~~~~~d~~l~~~l~~~~~~v~~~~~~~~~~~a~~~l~~l~~--~~n~y~~~~~p 430 (511)
T PRK11893 357 NLAQRTLSMIAKNFDGKVPE----PGALTEADEALLEAAAALLERVRAAMDNLAFDKALEAILALVR--AANKYIDEQAP 430 (511)
T ss_pred HHHHHHHHHHHHhcCCCCCC----CcccchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH--HHHHHHhhCCC
Confidence 87654333222 22221 1235678999999999999999999999999999999999985 68999999999
Q ss_pred ccccCCCChHhHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhCCC
Q 003799 690 RLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPF 736 (794)
Q Consensus 690 rly~~~~d~~~r~s~~~vL~~iL~~l~~lLaP~~P~~aEEiw~~L~~ 736 (794)
|...+. +..+++++..+++++++.++++|+|||||+||+||+.|+.
T Consensus 431 w~~~~~-~~~~~~~~l~~~~~~l~~l~~ll~P~~P~~ae~i~~~L~~ 476 (511)
T PRK11893 431 WSLAKT-DPERLATVLYTLLEVLRGIAVLLQPVMPELAAKILDQLGV 476 (511)
T ss_pred hhhhcC-CHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHhCC
Confidence 865443 4445667778889999999999999999999999999974
No 39
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases. Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=100.00 E-value=5.1e-44 Score=398.63 Aligned_cols=154 Identities=34% Similarity=0.628 Sum_probs=147.2
Q ss_pred CcEEEEcCCCCCCCcccchHHHhHHHHHHHHHHHHhCCCeeEEeccccCCCchHHHHHHhhchhhh--hcCCCHHHHHHH
Q 003799 150 ENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDA--KKDLTPSKLRAK 227 (794)
Q Consensus 150 ~~f~i~~~pPy~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G~D~hGlpie~~~~k~~~~~~--~~~~~~~~~~~~ 227 (794)
++|+|++|||||||.|||||+++++++|+++||+||+|++|+|++||||||+|||..+++.++... ..++++++|++.
T Consensus 1 ~~f~i~~~pPy~nG~lHiGH~~~~~~~Dv~~Ry~r~~G~~V~~~~G~D~hG~pie~~a~k~~~~~~~~~~~~~~~~~~~~ 80 (382)
T cd00817 1 PVFVIDTPPPNVTGSLHMGHALNNTIQDIIARYKRMKGYNVLWPPGTDHAGIATQVVVEKKLGIEGKTRHDLGREEFLEK 80 (382)
T ss_pred CcEEEecCCCCCCCcchHHHHHHHHHHHHHHHHHHhcCCcccccCccCCCCChHHHHHHHHhcccccchhcCCHHHHHHH
Confidence 589999999999999999999999999999999999999999999999999999999998875432 246899999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCCccCCCCccccCChHHHHHHHHHHHHHHHcCCeeecccCceeccCCCccccccccc
Q 003799 228 AAKFAKATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAEAELE 303 (794)
Q Consensus 228 ~~~~a~~~~~~~~~~~~~lGi~~dwd~~~~T~d~~~~~~v~~~f~~L~~kGlIy~~~~~v~w~~~~~t~Lae~Eve 303 (794)
|+++|+++++.++++|++||++.||+++++|++|.|.+.++++|.+|+++|+||++.++|+|||.|+|+|+++||-
T Consensus 81 ~~~~~~~~~~~~~~~~~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~yc~~~~t~l~~~evc 156 (382)
T cd00817 81 CWEWKEESGGKIREQLKRLGASVDWSREYFTMDPGLSRAVQEAFVRLYEKGLIYRDNRLVNWCPKLRTAISDIEVC 156 (382)
T ss_pred HHHHHHHHHHHHHHHHHHhCceeecCCCcCCCCHHHHHHHHHHHHHHHHCCCEEeeeeEEeecCCcCCCCCcchhc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999984
No 40
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=100.00 E-value=5.9e-41 Score=373.71 Aligned_cols=359 Identities=21% Similarity=0.270 Sum_probs=222.2
Q ss_pred EEEEcCCCCCCCcccchHHHhHHHHHHHHHHHHhCCCeeEEeccccCCCchHHHHHHhhchhhhhcCCCHHHHHHHHHHH
Q 003799 152 FVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKAAKF 231 (794)
Q Consensus 152 f~i~~~pPy~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G~D~hGlpie~~~~k~~~~~~~~~~~~~~~~~~~~~~ 231 (794)
|+||+|+|||||.|||||+++++.+|+++||+||+|++|.++.|+|+||++|+.+|+ +.+++|+++
T Consensus 1 ~~ITt~~pY~Ng~lHlGH~~~~l~ADv~aR~~r~~G~~v~~~tGtDehG~~i~~~A~-------~~g~~p~~~------- 66 (391)
T PF09334_consen 1 FYITTPIPYPNGDLHLGHLYPYLAADVLARYLRLRGHDVLFVTGTDEHGSKIETAAE-------KQGIDPEEF------- 66 (391)
T ss_dssp EEEEEEEEETSSS-BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEE-SSHHHHHHHH-------HTTS-HHHH-------
T ss_pred CEEecCCCCCCCCCCCChhHHHHHHHHHHHHHhhcccceeeEEecchhhHHHHHHHH-------HcCCCHHHH-------
Confidence 789999999999999999999999999999999999999999999999999999998 667889887
Q ss_pred HHHHHHHHHHHHHHcCCccCCCCccccCChHHHHHHHHHHHHHHHcCCeeecccCceeccCCCccccccccccCCccccc
Q 003799 232 AKATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAEAELEYPEGHVSR 311 (794)
Q Consensus 232 a~~~~~~~~~~~~~lGi~~dwd~~~~T~d~~~~~~v~~~f~~L~~kGlIy~~~~~v~w~~~~~t~Lae~Evey~e~~~~~ 311 (794)
|+++.+.+++++++||| ++|++.+|+++.|.+.++++|.+|+++|+||+++.+++||+.|+++|+|.+|+ |.|+.
T Consensus 67 ~~~~~~~~~~~~~~~~I--~~D~F~rTt~~~h~~~v~~i~~~L~~~G~I~~~~~~~~Yc~~~e~fl~e~~v~---g~CP~ 141 (391)
T PF09334_consen 67 CDKYSAKFKELLEALNI--SYDRFIRTTDDRHKEFVQEIFKRLYDNGYIYKREYEGWYCPSCERFLPESFVE---GTCPY 141 (391)
T ss_dssp HHHHHHHHHHHHHHTT-----SEEEETTSHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETTTTEEE-GGGET---CEETT
T ss_pred HHHHHHHHHHHHHHcCC--CCcceeCCCCHHHHHHHHHHHHHHHhcCceeecccceeEecCcCcccccceee---ccccC
Confidence 89999999999999999 88899999999999999999999999999999999999999999999999997 45655
Q ss_pred ccce------------eEE---ecc----CCCCccccccc---c--cCC--ccceec-cCCCCccccccEEEECCCc-ce
Q 003799 312 SIYA------------VFR---MVS----APPSTSGLLNE---F--LPD--LGLAVW-TTTPWTVPANAAVAVNAKL-QY 363 (794)
Q Consensus 312 ~~~v------------~F~---l~~----~~~~~~~~l~~---~--~~~--~~l~iw-TT~PwTi~~n~av~v~p~~-~Y 363 (794)
|.+- .+. +.+ ........-++ + +.. ..|.-| .+.|...+. .. .+
T Consensus 142 C~~~~a~g~~Ce~cG~~~~~~~l~~p~~~~~g~~~~~r~e~~~ff~L~~~~~~L~~~l~~~~~~~~~--------~~~~~ 213 (391)
T PF09334_consen 142 CGSDKARGDQCENCGRPLEPEELINPVCKICGSPPEVREEENYFFKLSKFRDQLREWLESNPDFPPP--------RVREI 213 (391)
T ss_dssp T--SSCTTTEETTTSSBEECCCSECEEETTTS-B-EEEEEEEEEE-GGGGHHHHHHHHHHSTTSSHH--------HHHHH
T ss_pred cCccccCCCcccCCCCCcccccccCCccccccccCccccceEEEEehHHhHHHHHHHHhcCCCCCCh--------hHHHH
Confidence 4420 011 000 00000000000 0 000 000000 111100000 00 11
Q ss_pred eeeeecccccCCCCCcCCCCCCCCCcccCCcceEeeecccchHHHHHhcCCceEEEeeeccCcccCCeeecCCCCCcccE
Q 003799 364 AVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFIIVASDLVPTLEAKWGTKLVIKKTLAGSDLENCRYVHPVDNRQCPV 443 (794)
Q Consensus 364 ~~v~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~G~~L~g~~~~~Pl~~~~~pv 443 (794)
+.--+..++.|.++| ++..|||++|+++++.++||.|++-.+....+...+- .|..-.-..++
T Consensus 214 ~~~~l~~~L~d~~Is---~~~~WGI~vP~~~~~~iyVWfdal~~Ylt~~~~~~~~----~~~~~~~~~~w---------- 276 (391)
T PF09334_consen 214 VRNWLKEGLPDLSIS---RPLDWGIPVPGDPGQVIYVWFDALIGYLTATGYLAEK----RGDPEEFKKWW---------- 276 (391)
T ss_dssp HHHHHHT----EE-E---CTTSSSEEETTEEEEEE-HHHHHHTHHHHTTTTTHHH----TTTSHHHHHHH----------
T ss_pred HHHHhhcccCceeee---cCCCCcceeeccCCceEEEcchHHHHHHHHhcccccc----ccccchhhhhc----------
Confidence 111234668899998 5678999999999999999999999988765431100 00000000011
Q ss_pred EeccCcccccCCCCceeecCCCChhhHHHHHHhCCCccccCCCCCccccccCCCCCccccccchHHHHHHHHhcCCcccc
Q 003799 444 VIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPILSPVDDEGKFTEEAGKFSGLDVLGDGNVAVVKYLDEQMSLIME 523 (794)
Q Consensus 444 vi~~~~V~~~~GTG~Vh~aPaHg~~D~~~~~~~gl~i~~~vd~~G~~~~~~~~~~G~~v~~ea~~~ii~~L~~~g~l~~~ 523 (794)
..+.++-+||.. |.++..---.....+|...|..++.
T Consensus 277 -------~~~~~~~~v~~i------------------------------------GkDi~~fH~i~~pa~l~a~~~~lP~ 313 (391)
T PF09334_consen 277 -------ANDSDVEIVHFI------------------------------------GKDIIRFHAIYWPAMLLAAGLPLPR 313 (391)
T ss_dssp -------CST--SEEEEEE------------------------------------EGGGHHHHHTHHHHHHHHCTB---S
T ss_pred -------cccCCceEEEEE------------------------------------ccchhHHHHHHhHHHHhcccCCCCC
Confidence 011222222221 1111001111223455555555555
Q ss_pred cccccccccccCCCCcEEEcccCccccchhhHHHHHHhhhcCeeecCCCCCCCCCCchhhhhhhhc-CCCCceecChHHH
Q 003799 524 EPYEHKYPYDWRTKKPTIFRATEQWFASVEGFRQAAMDAIGQVKWVPPQEAPGYGADVLRLWVSSV-DYTGDVMIGPQVL 602 (794)
Q Consensus 524 ~~~~h~yp~~WRt~~pii~r~t~QWfi~~~~~~~~~l~~i~~v~~~P~~~~~~yGaD~lRl~las~-~~~~Di~~s~~~l 602 (794)
..+.|.+ |- +++ +||+++.+++.| |.+++++||+|++|||+++. ...+|.+|+++.+
T Consensus 314 ~i~~~~~-----------------~~--~~g--~K~SkS~gn~i~-~~~~~~~~~~D~~R~~L~~~~~~~~d~~F~~~~~ 371 (391)
T PF09334_consen 314 RIVVHGF-----------------LT--LDG--EKMSKSRGNVIW-PDDLLEEYGADALRYYLAREGPEGQDSDFSWEDF 371 (391)
T ss_dssp EEEEE-------------------EE--ETT--CCEETTTTESSB-HHHHHHHH-HHHHHHHHHHHSSTTS-EEE-HHHH
T ss_pred EEEeeee-----------------EE--ECC--eeccccCCcccC-HHHHHHhCChHHHHHHHHHhcCCCCCCCCCHHHH
Confidence 5555544 22 333 578889999888 66677889999999999875 6678999998877
Q ss_pred HHH--HHHHHHHHhHHHHH
Q 003799 603 RQM--SDIYRKLRGTLRYL 619 (794)
Q Consensus 603 ~~~--~~~~~kl~Nt~rfl 619 (794)
... .++.+++.|.+.++
T Consensus 372 ~~~~n~~L~~~~gNl~~R~ 390 (391)
T PF09334_consen 372 IERVNNELANTLGNLVNRV 390 (391)
T ss_dssp HHHHHHCCCCCHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHhcc
Confidence 543 34456677776554
No 41
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=100.00 E-value=1.4e-37 Score=339.56 Aligned_cols=217 Identities=24% Similarity=0.300 Sum_probs=174.3
Q ss_pred cEEEEcCCCCCCCcccchHHHhHHHHHHHHHHHHhCCCeeEEeccccCCCchHHHHHHhhchhhhhcCCCHHHHHHHHHH
Q 003799 151 NFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKAAK 230 (794)
Q Consensus 151 ~f~i~~~pPy~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G~D~hGlpie~~~~k~~~~~~~~~~~~~~~~~~~~~ 230 (794)
+|+|++|||||||.|||||+++++++|+++||+||+|++|.+++|+|+||+||+.+++ +.+.+|.++
T Consensus 1 ~~~it~~~Py~ng~~HlGH~~~~~~~Dv~~R~~r~~G~~V~~~~g~Dd~g~~i~~~a~-------~~g~~~~e~------ 67 (319)
T cd00814 1 KVLITTALPYVNGVPHLGHLYGTVLADVFARYQRLRGYDVLFVTGTDEHGTKIEQKAE-------EEGVTPQEL------ 67 (319)
T ss_pred CEEEEeCCCCCCCCcchhhHHHHHHHHHHHHHHHhCCCcccccCccCCCCcHHHHHHH-------HcCCCHHHH------
Confidence 5899999999999999999999999999999999999999999999999999999987 456788766
Q ss_pred HHHHHHHHHHHHHHHcCCccCCCCccccCChHHHHHHHHHHHHHHHcCCeeecccCceeccCCCccccccccccCCcccc
Q 003799 231 FAKATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAEAELEYPEGHVS 310 (794)
Q Consensus 231 ~a~~~~~~~~~~~~~lGi~~dwd~~~~T~d~~~~~~v~~~f~~L~~kGlIy~~~~~v~w~~~~~t~Lae~Evey~e~~~~ 310 (794)
|+.+++.+++++++||| ++|.+++|+++.|...++++|.+|.++|+||++..+++||+.|+++|+ |.. ..
T Consensus 68 -~~~~~~~~~~~l~~LgI--~~D~~~~tt~~~~~~~v~~i~~~L~ekG~iY~~~~~~~yc~~~~~~l~--e~~-----~~ 137 (319)
T cd00814 68 -CDKYHEIFKDLFKWLNI--SFDYFIRTTSPRHKEIVQEFFKKLYENGYIYEGEYEGLYCVSCERFLP--EWR-----EE 137 (319)
T ss_pred -HHHHHHHHHHHHHHcCC--cCCCCeeCCCHHHHHHHHHHHHHHHHCCCEEeeeeeeeECCCCCcEee--EEE-----ee
Confidence 88999999999999999 888999999999999999999999999999999999999999999999 222 12
Q ss_pred cccceeEEeccCCCCcccccccccCCccceeccCCCC-ccccccEEEECCCcceeeeeecccccCCCCCcCCCCCCCCCc
Q 003799 311 RSIYAVFRMVSAPPSTSGLLNEFLPDLGLAVWTTTPW-TVPANAAVAVNAKLQYAVVEIQSLLEGDSAAPANKKSRPGNV 389 (794)
Q Consensus 311 ~~~~v~F~l~~~~~~~~~~l~~~~~~~~l~iwTT~Pw-Ti~~n~av~v~p~~~Y~~v~~~~~~~~~s~~~~~~~~~~g~~ 389 (794)
+. .+|++.++++.+.+.++. .+. .+|.+. ...+.--+.+++.|.++||+.. .||++
T Consensus 138 ~~--~ff~l~~~~~~l~~~~~~------------~~~~~~p~~~-------~~~~~~~l~~~l~d~~isR~~~--~WGip 194 (319)
T cd00814 138 EH--YFFRLSKFQDRLLEWLEK------------NPDFIWPENA-------RNEVLSWLKEGLKDLSITRDLF--DWGIP 194 (319)
T ss_pred ee--EEEEhHHHHHHHHHHHHh------------CCccCCCHHH-------HHHHHHHHhCCCcccCCCccCc--ccCee
Confidence 22 358887665433322221 110 111110 0111111234578999999653 79999
Q ss_pred ccCCcceEeeecccchHHHHHhcC
Q 003799 390 LKDQKKVFIIVASDLVPTLEAKWG 413 (794)
Q Consensus 390 ~~~~~~~~~iv~~~~~~~~~~~~~ 413 (794)
+|.+.++.++||.|++-.+.+..+
T Consensus 195 vp~~~~~~~yvWfda~~~y~~~~~ 218 (319)
T cd00814 195 VPLDPGKVIYVWFDALIGYISATG 218 (319)
T ss_pred CCCCCCcEEEEehhhHHHHHHHcc
Confidence 999999999999999888766543
No 42
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=100.00 E-value=9.1e-38 Score=342.97 Aligned_cols=140 Identities=55% Similarity=0.962 Sum_probs=133.3
Q ss_pred CcEEEEcCCCCCCCcccchHHHhHHHHHHHHHHHHhCCCeeEEeccccCCCchHHHHHHhhchhh---hhcCCCHHHHHH
Q 003799 150 ENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDED---AKKDLTPSKLRA 226 (794)
Q Consensus 150 ~~f~i~~~pPy~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G~D~hGlpie~~~~k~~~~~---~~~~~~~~~~~~ 226 (794)
++|+|++|||||||.+|||||++++++|+++||++|+||+|.+++||||||+|||.++++.++.. ...+.+++++.+
T Consensus 1 ~~f~i~~~pP~vnG~lHiGHa~~~~~~Dvl~Ry~r~~G~~V~~~~g~D~hG~~ie~ka~k~lg~~~~~~~~~~~~~~~~~ 80 (338)
T cd00818 1 PEFVFHDGPPYANGLPHYGHALNKILKDIINRYKTMQGYYVPRRPGWDCHGLPIELKVEKELGISGKKDIEKMGIAEFNA 80 (338)
T ss_pred CCeEEecCCCCCCCCchHHHHHHHHHHHHHHHHHHhcCCccCCcCCcCCCCchhHHHHHHHhCCCCCcchhhcCHHHHHH
Confidence 47999999999999999999999999999999999999999999999999999999999876532 235678999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCccCCCCccccCChHHHHHHHHHHHHHHHcCCeeecccCcee
Q 003799 227 KAAKFAKATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHW 289 (794)
Q Consensus 227 ~~~~~a~~~~~~~~~~~~~lGi~~dwd~~~~T~d~~~~~~v~~~f~~L~~kGlIy~~~~~v~w 289 (794)
.|+++|+++++.+++++++||++.||+++++|+++.|.+.++++|.+|+++|+||++.++|+|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~lgi~~~~~~~~~T~~~~~~~~v~~~f~~L~~~G~iY~~~~~v~~ 143 (338)
T cd00818 81 KCREFALRYVDEQEEQFQRLGVWVDWENPYKTMDPEYMESVWWVFKQLHEKGLLYRGYKVVPW 143 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHhCceecCCCCeECCCHHHHHHHHHHHHHHHHCCCEeccCCeeee
Confidence 999999999999999999999999999999999999999999999999999999999999999
No 43
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=100.00 E-value=8e-35 Score=317.21 Aligned_cols=136 Identities=40% Similarity=0.815 Sum_probs=128.3
Q ss_pred cEEEEcCCCCCCCcccchHHHhHHHHHHHHHHHHhCCCeeEEeccccCCCchHHHHHHhhchhhhhcCCCHHHHHHHHHH
Q 003799 151 NFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKAAK 230 (794)
Q Consensus 151 ~f~i~~~pPy~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G~D~hGlpie~~~~k~~~~~~~~~~~~~~~~~~~~~ 230 (794)
+|+|++|||||||.+||||+++++++|+++||++|+||+|.+++||||||+||+.+|++.+.... .....+++.+.|++
T Consensus 1 ~~~i~~~pP~~~g~~HiGH~~~~i~~D~i~R~~r~~G~~v~~~~g~D~~g~~i~~~a~~~~~~~~-~~~~~~~~~~~~~~ 79 (312)
T cd00668 1 KFYVTTPPPYANGSLHLGHALTHIIADFIARYKRMRGYEVPFLPGWDTHGLPIELKAERKGGRKK-KTIWIEEFREDPKE 79 (312)
T ss_pred CEEEecCCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCCCCCccCCCCHHHHHHHHHhcCccc-ccccHHHHHHHHHH
Confidence 59999999999999999999999999999999999999999999999999999999998765443 23447889999999
Q ss_pred HHHHHHHHHHHHHHHcCCccCCCCccccCChHHHHHHHHHHHHHHHcCCeeecccCc
Q 003799 231 FAKATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPV 287 (794)
Q Consensus 231 ~a~~~~~~~~~~~~~lGi~~dwd~~~~T~d~~~~~~v~~~f~~L~~kGlIy~~~~~v 287 (794)
+|+++.+.+++++++|||+.||++++.|+++.|.+.++++|.+|+++|+||++.++|
T Consensus 80 ~~~~~~~~~~~~l~~lgI~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~G~iY~~~~~v 136 (312)
T cd00668 80 FVEEMSGEHKEDFRRLGISYDWSDEYITTEPEYSKAVELIFSRLYEKGLIYRGTHPV 136 (312)
T ss_pred HHHHHHHHHHHHHHHhCccccCCCCeECCCHHHHHHHHHHHHHHHHCCCEEeeccee
Confidence 999999999999999999999999999999999999999999999999999999988
No 44
>KOG1247 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=3.5e-31 Score=279.54 Aligned_cols=477 Identities=15% Similarity=0.223 Sum_probs=313.5
Q ss_pred CCCcEEEEcCCCCCCCcccchHHHhHHH-HHHHHHHHHhCCCeeEEeccccCCCchHHHHHHhhchhhhhcCCCHHHHHH
Q 003799 148 DGENFVLHDGPPYANGNLHMGHALNKIL-KDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRA 226 (794)
Q Consensus 148 ~~~~f~i~~~pPy~nG~lHiGHa~~~il-~Dii~R~~r~~G~~V~~~~G~D~hGlpie~~~~k~~~~~~~~~~~~~~~~~ 226 (794)
+...-+|+..-||+|..+|+|++.+.++ +|+++||.+++|++..|++|+|+.|..+|.++. .++++|.++
T Consensus 12 n~rnilitsalpyvnnvphlgNIIg~vlsAdV~Aryc~~r~~~~~yicGTDEYgtatetkal-------eeg~tP~el-- 82 (567)
T KOG1247|consen 12 NERNILITSALPYVNNVPHLGNIIGSVLSADVFARYCPLRGPNTLYICGTDEYGTATETKAL-------EEGLTPQEL-- 82 (567)
T ss_pred CccceeeecccceecccccccceeeEEeehhhhcccccCCCCceEEeccccccchhhHHHHH-------HccCCHHHH--
Confidence 4567788999999999999999999777 999999999999999999999999999999998 678999888
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCccCCCCccccCChHHHHHHHHHHHHHHHcCCeeecccCceeccCCCccccccccccCC
Q 003799 227 KAAKFAKATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAEAELEYPE 306 (794)
Q Consensus 227 ~~~~~a~~~~~~~~~~~~~lGi~~dwd~~~~T~d~~~~~~v~~~f~~L~~kGlIy~~~~~v~w~~~~~t~Lae~Evey~e 306 (794)
|+++...++..+..++| |+|.+-+|+.+...+..|.+|.+|+++|++....-.+.||..|+++||+..|+
T Consensus 83 -----cdKyh~ihk~vy~Wf~I--dfD~fgrtTT~~qT~i~Q~iF~kl~~ng~~se~tv~qLyC~vc~~fladr~ve--- 152 (567)
T KOG1247|consen 83 -----CDKYHGIHKVVYDWFKI--DFDEFGRTTTKTQTEICQDIFSKLYDNGYLSEQTVKQLYCEVCDTFLADRFVE--- 152 (567)
T ss_pred -----HHhcchhHHHHHHhhcc--cccccCcccCcchhHHHHHHhhchhhcCCcccceeeeEEehhhcccccchhhh---
Confidence 99999999999999999 99999999999999999999999999999999999999999999999999997
Q ss_pred cccccccceeEEeccCCCCcccccccccCCccceeccCCCCccccccEEEECCCcceeeeeecccccCCCCCcCCCCCCC
Q 003799 307 GHVSRSIYAVFRMVSAPPSTSGLLNEFLPDLGLAVWTTTPWTVPANAAVAVNAKLQYAVVEIQSLLEGDSAAPANKKSRP 386 (794)
Q Consensus 307 ~~~~~~~~v~F~l~~~~~~~~~~l~~~~~~~~l~iwTT~PwTi~~n~av~v~p~~~Y~~v~~~~~~~~~s~~~~~~~~~~ 386 (794)
|+|+.|.| .+.....++.+...+....+. +|-+.-+-+.|..++
T Consensus 153 g~cp~C~y-----d~ARGDqcd~cG~l~N~~el~--------~pkc~ic~~~p~~~~----------------------- 196 (567)
T KOG1247|consen 153 GKCPFCGY-----DDARGDQCDKCGKLVNAAELK--------IPKCKICQAGPVVRQ----------------------- 196 (567)
T ss_pred ccCCCCCC-----ccccchhhhhhhhhcCHHHhc--------CcchheeccCCeeee-----------------------
Confidence 68888887 222222222222111111111 111222222222211
Q ss_pred CCcccCCcceEeeecccchHH---------------------HHHhc---CCceEEEeeeccCccc-CCeeecCCCCCcc
Q 003799 387 GNVLKDQKKVFIIVASDLVPT---------------------LEAKW---GTKLVIKKTLAGSDLE-NCRYVHPVDNRQC 441 (794)
Q Consensus 387 g~~~~~~~~~~~iv~~~~~~~---------------------~~~~~---~~~~~~~~~~~G~~L~-g~~~~~Pl~~~~~ 441 (794)
.+++.+..+.++. +.+.| |..... ++ .||. |.++ |+.+-+-
T Consensus 197 --------t~h~Fl~L~kl~~~lee~~~~~~~~~~WS~Na~~it~sWlk~gl~pRC---iT-RDLkWGtpV--Ple~fk~ 262 (567)
T KOG1247|consen 197 --------TQHLFLSLDKLEPRLEEWLRRTLVEGDWSQNAQNITRSWLKDGLKPRC---IT-RDLKWGTPV--PLEKFKD 262 (567)
T ss_pred --------eeEEEEEhHHhHHHHHHHHHhccccCCCccchHHHHHHHHHccccccc---cc-cccccCCCc--Chhhhcc
Confidence 2333343333322 22221 111111 11 1232 3333 5655555
Q ss_pred cEEeccCcccccCCCCceeecCCCChhhHHHHHHhCCCccccCCCCCccccccCCCCCccccccchHHHHHHHHhcCCcc
Q 003799 442 PVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPILSPVDDEGKFTEEAGKFSGLDVLGDGNVAVVKYLDEQMSLI 521 (794)
Q Consensus 442 pvvi~~~~V~~~~GTG~Vh~aPaHg~~D~~~~~~~gl~i~~~vd~~G~~~~~~~~~~G~~v~~ea~~~ii~~L~~~g~l~ 521 (794)
.| + ||..|.-.|.+.++-..- +++.-+-++ .-+..+.+.+.+.+..+
T Consensus 263 KV-f---YVWFDA~IGYlsit~~yt-~ew~kWwkn----------------------------pE~v~LyqFmgKDNVpF 309 (567)
T KOG1247|consen 263 KV-F---YVWFDAPIGYLSITKNYT-DEWEKWWKN----------------------------PENVELYQFMGKDNVPF 309 (567)
T ss_pred cE-E---EEEEcCcceEEEeehhhh-HHHHHHhcC----------------------------HhhhhHHHHhccCCCcc
Confidence 55 4 888888889888774333 333322221 00111222222222333
Q ss_pred cccccccccccccCC--CCcEEEcccCccccchhhHHHHHHhhhcCeeecCCC-CCCCCCCchhhhhhhhcCCC-Cceec
Q 003799 522 MEEPYEHKYPYDWRT--KKPTIFRATEQWFASVEGFRQAAMDAIGQVKWVPPQ-EAPGYGADVLRLWVSSVDYT-GDVMI 597 (794)
Q Consensus 522 ~~~~~~h~yp~~WRt--~~pii~r~t~QWfi~~~~~~~~~l~~i~~v~~~P~~-~~~~yGaD~lRl~las~~~~-~Di~~ 597 (794)
|...+.-+- -.| +-+++.++.-.=|++.++ .|.+++-+.=.| -.. .....++|++|||++...+. +|..|
T Consensus 310 HtviFP~s~---lgt~en~t~v~~l~aTeYLnyE~--gKFSKSrgvGvF-G~~aqd~gi~~~vWRyYLl~~RPEssDs~F 383 (567)
T KOG1247|consen 310 HTVIFPCSQ---LGTEENYTVVHHLSATEYLNYED--GKFSKSRGVGVF-GNDAQDTGIPASVWRYYLLYIRPESSDSAF 383 (567)
T ss_pred eeeecchhh---hcCCCCchhheeechhhhhcccc--Cccccccccccc-ccccccCCCCHHHHHHHHhhccCcccCCcC
Confidence 322221100 001 112333333333444444 344444332111 221 22367899999999988664 57766
Q ss_pred ChH--HHHHHHHHHHHHHhHHHHHHhcccCCCCCCCcCCCCCChhhHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Q 003799 598 GPQ--VLRQMSDIYRKLRGTLRYLLGNLHDWRVGNSISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFI 675 (794)
Q Consensus 598 s~~--~l~~~~~~~~kl~Nt~rfll~nl~~~~~~~~~~~~~l~~~D~~il~~l~~lv~~v~~~~e~y~f~~ai~~l~~f~ 675 (794)
+.. +++..++.+++|.|.+.+++.-+..... ..+|.-.+..-|+-++..++++..+..++||.-+.++|++.+|+..
T Consensus 384 sw~df~~k~nseLl~NLGNFvNR~l~fv~~~~~-g~Vp~~~~~~~~~~~~~dv~~~~~~y~~~me~vklr~~l~~~m~is 462 (567)
T KOG1247|consen 384 SWDDFVLKVNSELLNNLGNFVNRVLKFVAAKYN-GVVPEMELTSGDKKLLEDVNELLAKYVAAMEKVKLREALKTAMEIS 462 (567)
T ss_pred cHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhC-CcccceeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 655 5577889999999977655554332211 1233335555599999999999999999999999999999999988
Q ss_pred HHhhhHHHHHhhccccccCCCChHhHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhCCC
Q 003799 676 IVDLSNFYFDVAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPF 736 (794)
Q Consensus 676 ~~~lsn~Yle~~K~rly~~~~d~~~r~s~~~vL~~iL~~l~~lLaP~~P~~aEEiw~~L~~ 736 (794)
. .+|.|++..+++.. ...+..+...+..+-..++..+..||.|+||.++.+|..+|+.
T Consensus 463 ~--~GNqylQ~~~~~k~-~~~~r~r~~~vi~~a~nii~lvs~ll~P~mP~~s~~I~kqlnl 520 (567)
T KOG1247|consen 463 R--RGNQYLQENTDNKL-YEESRQRAGTVIGLAANIIYLVSVLLYPYMPTTSAEILKQLNL 520 (567)
T ss_pred H--hhhHHHhcccccch-hhhcccccceeeehhhHHHHHHHHHhccccccchHHHHHHhCC
Confidence 6 69999999886532 1122222222333456778888999999999999999999864
No 45
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated
Probab=99.97 E-value=3.3e-30 Score=293.94 Aligned_cols=337 Identities=18% Similarity=0.229 Sum_probs=224.7
Q ss_pred CCCcEEEEcCCCCCCCcccchHHHhHHHHHHHHHHHHhCCCeeEEeccccCCCchHHHHHHhhchhhhhcCCCHHHHHHH
Q 003799 148 DGENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAK 227 (794)
Q Consensus 148 ~~~~f~i~~~pPy~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G~D~hGlpie~~~~k~~~~~~~~~~~~~~~~~~ 227 (794)
++.+++++ .|+|+|.+||||++++++.|+++||+|+.||+|.|+.|+|+||.+|...+. +.+.+|.++
T Consensus 22 ~~v~~yvc--gPtvy~~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~tD~ddki~~~A~-------~~g~~~~e~--- 89 (463)
T PRK00260 22 GKVKMYVC--GPTVYDYAHIGHARSFVVFDVLRRYLRYLGYKVTYVRNITDIDDKIIKRAN-------EEGESIKEL--- 89 (463)
T ss_pred CcceEEEe--CCccCCCcccccchhHHHHHHHHHHHHhcCCceEEeecCCCCcHHHHHHHH-------HcCCCHHHH---
Confidence 34455555 567889999999999999999999999999999999999999999998876 456677665
Q ss_pred HHHHHHHHHHHHHHHHHHcCC-ccCCCCccccCChHHHHHHHHHHHHHHHcCCeeecccCceeccCCCcc---ccccccc
Q 003799 228 AAKFAKATVKAQMASFKRYGV-WADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTA---LAEAELE 303 (794)
Q Consensus 228 ~~~~a~~~~~~~~~~~~~lGi-~~dwd~~~~T~d~~~~~~v~~~f~~L~~kGlIy~~~~~v~w~~~~~t~---Lae~Eve 303 (794)
++++++.++++|++||| ..||. .+++ .|...+++++.+|+++|++|++..+|+||++.-.- ||...++
T Consensus 90 ----~~~~~~~f~~~~~~Lgi~~~d~~--~r~t--~~~~~~~~~i~~L~~kG~aY~~~~~Vyfdv~~~~~yg~ls~~~~~ 161 (463)
T PRK00260 90 ----TERYIAAFHEDMDALNVLPPDIE--PRAT--EHIPEIIELIERLIDKGHAYEADGDVYFDVRKFPDYGKLSGRNLD 161 (463)
T ss_pred ----HHHHHHHHHHHHHHcCCCCCCcc--cccc--ccHHHHHHHHHHHHHCCCEEEecCeEEEecccccccccCCCCCHH
Confidence 99999999999999999 44542 2333 58899999999999999999999999999986431 2211111
Q ss_pred ---------cCCcccccccceeEEeccCCCCcccccccccCCccceeccCCCCccccccEEEECCCcceeeeeecccccC
Q 003799 304 ---------YPEGHVSRSIYAVFRMVSAPPSTSGLLNEFLPDLGLAVWTTTPWTVPANAAVAVNAKLQYAVVEIQSLLEG 374 (794)
Q Consensus 304 ---------y~e~~~~~~~~v~F~l~~~~~~~~~~l~~~~~~~~l~iwTT~PwTi~~n~av~v~p~~~Y~~v~~~~~~~~ 374 (794)
-.+++.++..|+.++-.+.+ . . ...+||.
T Consensus 162 ~~~~~~~~~~~~~K~~~~DF~Lwk~~~~~--------------~-~-~w~s~~g-------------------------- 199 (463)
T PRK00260 162 ELQAGARVEVAEEKRDPLDFALWKAAKPG--------------E-P-SWESPWG-------------------------- 199 (463)
T ss_pred HHhccCcCCcccCCCCccccceecCCCCC--------------C-C-CCCCCCC--------------------------
Confidence 00011112222111111000 0 0 0111221
Q ss_pred CCCCcCCCCCCCCCcccCCcceEeeecccchHHHHHhcCCceEEEeeeccCcccCCeeecCCCCCcccE----EeccCcc
Q 003799 375 DSAAPANKKSRPGNVLKDQKKVFIIVASDLVPTLEAKWGTKLVIKKTLAGSDLENCRYVHPVDNRQCPV----VIGGDYI 450 (794)
Q Consensus 375 ~s~~~~~~~~~~g~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~G~~L~g~~~~~Pl~~~~~pv----vi~~~~V 450 (794)
. |++-||- ++.. ++ ++-+
T Consensus 200 -------------~----------------------------------------grpgWhi----ecsam~~~~l-g~~~ 221 (463)
T PRK00260 200 -------------K----------------------------------------GRPGWHI----ECSAMSTKYL-GETF 221 (463)
T ss_pred -------------C----------------------------------------CCCChhH----HHHHHHHHhc-CCCc
Confidence 0 2222221 1100 00 1111
Q ss_pred cccCCCCceeecCCCChhhHHHHHHhCCCccccCCCCCccccccCCCCCccccccchHHHHHHHHhcCCccccccccccc
Q 003799 451 TTESGTGLVHTAPGHGQEDYVTSLKYGLPILSPVDDEGKFTEEAGKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKY 530 (794)
Q Consensus 451 ~~~~GTG~Vh~aPaHg~~D~~~~~~~gl~i~~~vd~~G~~~~~~~~~~G~~v~~ea~~~ii~~L~~~g~l~~~~~~~h~y 530 (794)
+. -|.|.=++-|=|. .++++... +.| ..+
T Consensus 222 Di-h~gG~DlifpHh~---neiaqs~a-------------------~~g----------------------------~p~ 250 (463)
T PRK00260 222 DI-HGGGADLIFPHHE---NEIAQSEA-------------------ATG----------------------------KPF 250 (463)
T ss_pred ce-ecCccccCCCchH---hHHHHHHH-------------------hcC----------------------------CCc
Confidence 10 1233333333331 11111000 000 011
Q ss_pred ccccCCCCcEEEcccCccccchhhHHHHHHhhhcCeeecCCCCCCCCCCchhhhhhhhcCCCCceecChHHHHHHHHHHH
Q 003799 531 PYDWRTKKPTIFRATEQWFASVEGFRQAAMDAIGQVKWVPPQEAPGYGADVLRLWVSSVDYTGDVMIGPQVLRQMSDIYR 610 (794)
Q Consensus 531 p~~WRt~~pii~r~t~QWfi~~~~~~~~~l~~i~~v~~~P~~~~~~yGaD~lRl~las~~~~~Di~~s~~~l~~~~~~~~ 610 (794)
+-+|-+.. ++.+++ +||+++.+|+.. |.+++++||+|++|||++++.|.++++|+++.+.++.+.++
T Consensus 251 ~~~w~H~g----------~v~~~G--~KMSKS~GN~i~-~~dll~~~~~d~lR~~ll~~~~~~~~~fs~~~l~~a~~~~~ 317 (463)
T PRK00260 251 ANYWMHNG----------FVTVNG--EKMSKSLGNFFT-IRDLLKKYDPEVLRFFLLSAHYRSPLNFSEEALEQAKKALE 317 (463)
T ss_pred ceEEEEcc----------EEccCC--CcccCcCCCCCC-HHHHHHHcCchHhHHHHHhCCCCCCCccCHHHHHHHHHHHH
Confidence 11232222 334444 789999998876 56678899999999999999999999999999999999999
Q ss_pred HHHhHHHHHHhcccCCCCCCCcCCCCCChhhHHHHHHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHhhhHHHHHh
Q 003799 611 KLRGTLRYLLGNLHDWRVGNSISYDDLPMIDQYALFQLENIVKNIRESYE-SYQFFKIFQIIQRFIIVDLSNFYFDV 686 (794)
Q Consensus 611 kl~Nt~rfll~nl~~~~~~~~~~~~~l~~~D~~il~~l~~lv~~v~~~~e-~y~f~~ai~~l~~f~~~~lsn~Yle~ 686 (794)
||+|+++++.. ...|+|++++++.+++++.++|+ +|++.+|+..|++|+. ..|.|++.
T Consensus 318 rl~~~~~~~~~----------------~~~d~~~~~~l~~~~~~~~~al~ddln~~~Al~~l~~lv~--~~n~~~~~ 376 (463)
T PRK00260 318 RLYNALAETAL----------------GEDDEALLAELEEFKERFIEAMDDDFNTPEALAVLFELAR--EINRALET 376 (463)
T ss_pred HHHHHHHHhhh----------------ccchhhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--HHHHHhhc
Confidence 99999988631 13578999999999999999995 8999999999999986 35777764
No 46
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases. Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=99.97 E-value=4.6e-32 Score=295.28 Aligned_cols=126 Identities=33% Similarity=0.603 Sum_probs=119.2
Q ss_pred cEEEEcCCCCCCCcccchHHHhHHHHHHHHHHHHhCCCeeEEeccccCCCchHHHHHHhhchhhhhcCCCHHHHHHHHHH
Q 003799 151 NFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKAAK 230 (794)
Q Consensus 151 ~f~i~~~pPy~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G~D~hGlpie~~~~k~~~~~~~~~~~~~~~~~~~~~ 230 (794)
||+|++|||||||.+||||+++++++|+++||+|++|++|.+++|+|+||+||+..+++ .+.++ .+
T Consensus 1 k~~it~~~Py~ng~~HiGH~~~~v~~Dv~~R~lr~~G~~V~~v~g~Dd~g~~i~~~a~~-------~g~~~-------~e 66 (314)
T cd00812 1 KFYILVMFPYPSGALHVGHVRTYTIGDIIARYKRMQGYNVLFPMGFDAFGLPAENAAIK-------IGRDP-------ED 66 (314)
T ss_pred CeEEecCCCCCCCCccccchHHHHHHHHHHHHHHHcCCCcCCCCCcCCCCCHHHHHHHH-------cCCCH-------HH
Confidence 68999999999999999999999999999999999999999999999999999998873 34555 55
Q ss_pred HHHHHHHHHHHHHHHcCCccCCCCccccCChHHHHHHHHHHHHHHHcCCeeecccCceec
Q 003799 231 FAKATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWS 290 (794)
Q Consensus 231 ~a~~~~~~~~~~~~~lGi~~dwd~~~~T~d~~~~~~v~~~f~~L~~kGlIy~~~~~v~w~ 290 (794)
+|+++.+.+++++++||++.||++++.|++|.|.+.++++|.+|+++|+||++.++|+||
T Consensus 67 ~~~~~~~~~~~~~~~lgi~~d~~~~~~t~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~ 126 (314)
T cd00812 67 WTEYNIKKMKEQLKRMGFSYDWRREFTTCDPEYYKFTQWLFLKLYEKGLAYKKEAPVNWC 126 (314)
T ss_pred HHHHHHHHHHHHHHHhccceecccccccCCHHHHHHHHHHHHHHHHCCCEEecCceeeee
Confidence 599999999999999999999999999999999999999999999999999999999999
No 47
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=99.96 E-value=2.6e-28 Score=286.24 Aligned_cols=373 Identities=16% Similarity=0.166 Sum_probs=249.7
Q ss_pred CCcEEEEcCCCCCCCcccchHHHhHHHHHHHHHHHH-hCCCeeEEeccccCCCchHHHHHHhhchhhhhcCCC-HHHHHH
Q 003799 149 GENFVLHDGPPYANGNLHMGHALNKILKDIINRYKL-LQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLT-PSKLRA 226 (794)
Q Consensus 149 ~~~f~i~~~pPy~nG~lHiGHa~~~il~Dii~R~~r-~~G~~V~~~~G~D~hGlpie~~~~k~~~~~~~~~~~-~~~~~~ 226 (794)
.=.++++.|-+| +.+|||||+++|..|++.||++ +.||+|.|++|+|+||.+|..++. +.+++ +.++
T Consensus 60 ~v~~Y~CGPTvY--d~~HiGhart~v~~Dil~R~l~~~~Gy~V~~v~nitDidDKIi~~A~-------~~g~~~~~el-- 128 (651)
T PTZ00399 60 QVRWYTCGPTVY--DSSHLGHARTYVTFDIIRRILEDYFGYDVFYVMNITDIDDKIIKRAR-------EEKLSIFLEL-- 128 (651)
T ss_pred eeEEEEeCCCcc--CCcccccchHHHHHHHHHHHHHHhcCCceEEEeCCCCcchHHHHHHH-------HhCCCcHHHH--
Confidence 345677765555 9999999999999999999999 999999999999999999999887 55777 7666
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCccCCCCccccCChHHHHHHHHHHHHHHHcCCeeecccCceeccCCCccccccccccCC
Q 003799 227 KAAKFAKATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAEAELEYPE 306 (794)
Q Consensus 227 ~~~~~a~~~~~~~~~~~~~lGi~~dwd~~~~T~d~~~~~~v~~~f~~L~~kGlIy~~~~~v~w~~~~~t~Lae~Evey~e 306 (794)
|+++.+.+.+++++||| .....+.|. .+|...+..++.+|+++|++|.+...|||+.+.-.. ..-.|.
T Consensus 129 -----~~~~~~~f~~d~~~Lni--~~p~~~~r~-tehi~~ii~~i~~Li~~G~aY~~~gsvyFd~~~f~~---~~~~Yg- 196 (651)
T PTZ00399 129 -----ARKWEKEFFEDMKALNV--RPPDVITRV-SEYVPEIVDFIQKIIDNGFAYESNGSVYFDVEAFRK---AGHVYP- 196 (651)
T ss_pred -----HHHHHHHHHHHHHHcCC--CCCccccCc-CccHHHHHHHHHHHHHCCCEEEECCeEEEEchhccc---chhhHH-
Confidence 88999999999999999 444555555 689999999999999999999998888887764220 000121
Q ss_pred cccccccceeEEeccCCCCcccccccccCCccceeccCCCCccccccEEEECCCcceeeeeecccccCCC-CCcC-CCCC
Q 003799 307 GHVSRSIYAVFRMVSAPPSTSGLLNEFLPDLGLAVWTTTPWTVPANAAVAVNAKLQYAVVEIQSLLEGDS-AAPA-NKKS 384 (794)
Q Consensus 307 ~~~~~~~~v~F~l~~~~~~~~~~l~~~~~~~~l~iwTT~PwTi~~n~av~v~p~~~Y~~v~~~~~~~~~s-~~~~-~~~~ 384 (794)
+.++.. . .+ ..... .|... +.+.+ .+|. .-+.
T Consensus 197 -~L~p~~-------~-~~------------~~~~~--------~g~~~-----------------l~~~~~~Kr~~~DFa 230 (651)
T PTZ00399 197 -KLEPES-------V-AD------------EDRIA--------EGEGA-----------------LGKVSGEKRSPNDFA 230 (651)
T ss_pred -hhChhh-------c-CC------------HHHHh--------cccCC-----------------ccccCcCCCCCccHH
Confidence 111100 0 00 00000 00000 00111 2222 2233
Q ss_pred CCCCcccCCcceEeeecccchHHHHHhcCCceEEEeeeccCcccCCeeecCCCCCcccEEeccCcccccCCCCceeecCC
Q 003799 385 RPGNVLKDQKKVFIIVASDLVPTLEAKWGTKLVIKKTLAGSDLENCRYVHPVDNRQCPVVIGGDYITTESGTGLVHTAPG 464 (794)
Q Consensus 385 ~~g~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~G~~L~g~~~~~Pl~~~~~pvvi~~~~V~~~~GTG~Vh~aPa 464 (794)
.|++..|++.. |. +.||. |.+.||. +|.+ +..++.-. +=-+|+
T Consensus 231 LWk~~kpgep~-----W~-------SpwG~--------------GrPGWHi----ECsa-m~~~~lg~---~~DIh~--- 273 (651)
T PTZ00399 231 LWKASKPGEPS-----WD-------SPWGK--------------GRPGWHI----ECSA-MASNILGD---PIDIHS--- 273 (651)
T ss_pred hhCCCCCCCCC-----CC-------CCCCC--------------CCCCchH----HHHH-HHHHHcCC---cceeec---
Confidence 68888876542 21 22332 5666664 4444 33333211 001222
Q ss_pred CChhhHHHHHHhCCCccccCCCCCccccccCCCCCccccccchHHHHHHHHhcCCcccccccccccccccCCCCcEEEcc
Q 003799 465 HGQEDYVTSLKYGLPILSPVDDEGKFTEEAGKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTKKPTIFRA 544 (794)
Q Consensus 465 Hg~~D~~~~~~~gl~i~~~vd~~G~~~~~~~~~~G~~v~~ea~~~ii~~L~~~g~l~~~~~~~h~yp~~WRt~~pii~r~ 544 (794)
+ |++++.|..++.....++ +.|. +.+.-.|-+.
T Consensus 274 --------g---G~DL~FPHHeNEiAQseA--~~~~---------------------------~~~v~y~~H~------- 306 (651)
T PTZ00399 274 --------G---GIDLKFPHHDNELAQSEA--YFDK---------------------------HQWVNYFLHS------- 306 (651)
T ss_pred --------c---CCCCCCCcchhHHHHHHH--hhCC---------------------------CCCCcEEEEE-------
Confidence 1 666666665543222211 0110 0011112110
Q ss_pred cCccccchhhHHHHHHhhhcCeeecCCCCCCCCCCchhhhhhhhcCCCCceecChHHHHHHHHHHHHHHhHHHHHHhccc
Q 003799 545 TEQWFASVEGFRQAAMDAIGQVKWVPPQEAPGYGADVLRLWVSSVDYTGDVMIGPQVLRQMSDIYRKLRGTLRYLLGNLH 624 (794)
Q Consensus 545 t~QWfi~~~~~~~~~l~~i~~v~~~P~~~~~~yGaD~lRl~las~~~~~Di~~s~~~l~~~~~~~~kl~Nt~rfll~nl~ 624 (794)
=|+.+++ +||+++++|+.. |.+++++||+|++|||+++..+..|++|+++.+..+.+..++++|.+..+...+.
T Consensus 307 ---G~L~i~G--~KMSKSLGNfIt-p~dlLekygaDaLR~~lLs~~~~~dldFS~e~l~~a~~~~~~l~n~~~rl~s~l~ 380 (651)
T PTZ00399 307 ---GHLHIKG--LKMSKSLKNFIT-IRQALSKYTARQIRLLFLLHKWDKPMNYSDESMDEAIEKDKVFFNFFANVKIKLR 380 (651)
T ss_pred ---EEEEecc--chhhhcCCCccc-HHHHHHHcChHHHHHHHHhcCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0234455 799999999887 6668889999999999998899999999999999999988999998877655443
Q ss_pred CCCCCCCcCCCCCChhhHHHHHHHHHHHHHHHHHH-hcccHHHHHHHHHHHHHHhhhHHHHH
Q 003799 625 DWRVGNSISYDDLPMIDQYALFQLENIVKNIRESY-ESYQFFKIFQIIQRFIIVDLSNFYFD 685 (794)
Q Consensus 625 ~~~~~~~~~~~~l~~~D~~il~~l~~lv~~v~~~~-e~y~f~~ai~~l~~f~~~~lsn~Yle 685 (794)
+.... ....+...|+|++..++.+.+.+.++| ++|+++.|++.|++|+. .+|.|++
T Consensus 381 ~~~~~---~~~~~~~~d~~Ll~~l~~~~~~v~~Am~Ddfnt~~Al~~L~eLv~--~~N~yi~ 437 (651)
T PTZ00399 381 ESELT---SPQKWTQHDFELNELFEETKSAVHAALLDNFDTPEALQALQKLIS--ATNTYLN 437 (651)
T ss_pred hcccc---ccccCCHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--HHHHHHh
Confidence 32111 112345789999999999999999999 78999999999999986 5899996
No 48
>cd07960 Anticodon_Ia_Ile_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial isoleucyl tRNA synthetases. This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial and eukaryotic mitochondrial members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA.
Probab=99.95 E-value=1.6e-27 Score=239.51 Aligned_cols=179 Identities=42% Similarity=0.807 Sum_probs=154.9
Q ss_pred cChHHHHHHHHHHHHHHhHHHHHHhcccCCCCCCC-cCCCCCChhhHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Q 003799 597 IGPQVLRQMSDIYRKLRGTLRYLLGNLHDWRVGNS-ISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFI 675 (794)
Q Consensus 597 ~s~~~l~~~~~~~~kl~Nt~rfll~nl~~~~~~~~-~~~~~l~~~D~~il~~l~~lv~~v~~~~e~y~f~~ai~~l~~f~ 675 (794)
+|+++++++.++++||||++||+++++.++.+... .....+...|+|+++++++++++++++|++|+|++|++.+++|+
T Consensus 1 i~~~~~~~~~~~~~Kl~N~~rf~~~~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~i~~~~~~~e~~~f~~a~~~i~~f~ 80 (180)
T cd07960 1 ISDEILKQVAEAYRKIRNTFRFLLGNLNDFDPAKDAVPYEELLELDRYALHRLNELIKEVREAYENYEFHKVYQALNNFC 80 (180)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHcccCCCcccccCChhhccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 57889999999999999999999999888765421 12345678999999999999999999999999999999999999
Q ss_pred HHhhhHHHHHhhccccccCCCChHhHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhCCCCccccCCCCCCceeecCCC
Q 003799 676 IVDLSNFYFDVAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAAEFVFESKWP 755 (794)
Q Consensus 676 ~~~lsn~Yle~~K~rly~~~~d~~~r~s~~~vL~~iL~~l~~lLaP~~P~~aEEiw~~L~~~~~~~~~~~~~sV~~~~wP 755 (794)
++++||+|++.+|||+|++..++..+++++++|+.+++.++++|+|||||+|||+|+.|+.. . ..++|+.++||
T Consensus 81 ~~~l~n~Yi~~~k~~~~~~~~~~~~~~~~~~~l~~~l~~l~~lL~P~~P~~aeel~~~l~~~----~--~~~~v~~~~wP 154 (180)
T cd07960 81 TVDLSAFYLDIIKDRLYCDAKDSLERRSAQTVLYHILDALLKLLAPILPFTAEEVWEHLPGE----K--KEESVFLEDWP 154 (180)
T ss_pred HHHHHHHHHHhcccceecCCCCCHHHHHHHHHHHHHHHHHHHHHcchhhhhHHHHHHhcccc----C--CCCCeeccCCC
Confidence 98899999999999999865444445678889999999999999999999999999999742 0 12589999999
Q ss_pred CCCcccCCCChhHHHHHHHHHHHHHHHH
Q 003799 756 VLDEKWRTFPVGEIYFWGKILEVIVVVT 783 (794)
Q Consensus 756 ~~~e~~~~~~~~~~~~~~~i~~lR~~v~ 783 (794)
++++.+.+ ++++..++.++++|+.++
T Consensus 155 ~~~~~~~~--~~~~~~~~~~~~i~~~~~ 180 (180)
T cd07960 155 ELPEEWKD--EELEEKWEKLLALRDEVN 180 (180)
T ss_pred CCcccccC--HHHHHHHHHHHHHHHhhC
Confidence 99887666 778899999999999875
No 49
>TIGR00435 cysS cysteinyl-tRNA synthetase. This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln).
Probab=99.94 E-value=1.6e-26 Score=263.10 Aligned_cols=129 Identities=22% Similarity=0.247 Sum_probs=111.2
Q ss_pred CCCcEEEEcCCCCCCCcccchHHHhHHHHHHHHHHHHhCCCeeEEeccccCCCchHHHHHHhhchhhhhcCCCHHHHHHH
Q 003799 148 DGENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAK 227 (794)
Q Consensus 148 ~~~~f~i~~~pPy~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G~D~hGlpie~~~~k~~~~~~~~~~~~~~~~~~ 227 (794)
++.+++++ .|||+|.+||||+++++..|+++||++++||+|.|++|+|+||.+|...+. +.+++|.++
T Consensus 20 ~~v~~yvc--gptvy~~~HiGhar~~v~~Dvl~R~lr~~G~~V~~v~n~tD~ddkIi~~A~-------~~g~~~~e~--- 87 (465)
T TIGR00435 20 GKVKMYVC--GPTVYDYCHIGHARTAIVFDVLRRYLRYLGYKVQYVQNITDIDDKIIKRAR-------ENGESVYEV--- 87 (465)
T ss_pred CcceEEEe--cCccCCCcccccchHHHHHHHHHHHHHHcCCcEEEEEeeCCccHHHHHHHH-------HcCCCHHHH---
Confidence 44556655 348889999999999999999999999999999999999999999998876 567888777
Q ss_pred HHHHHHHHHHHHHHHHHHcCCccCCCCccccCChHHHHHHHHHHHHHHHcCCeeecc-cCceeccCCCc
Q 003799 228 AAKFAKATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGK-KPVHWSPSSRT 295 (794)
Q Consensus 228 ~~~~a~~~~~~~~~~~~~lGi~~dwd~~~~T~d~~~~~~v~~~f~~L~~kGlIy~~~-~~v~w~~~~~t 295 (794)
|+.+.+.+.+++++|||..|+-.+ +++ .|...+.+++.+|.++|++|+.. ..|+||+.|..
T Consensus 88 ----a~~~~~~f~~dl~~LgI~~d~~~~-raT--~hi~~i~~~i~~L~ekG~aY~~~~g~vyfdv~~~~ 149 (465)
T TIGR00435 88 ----SERFIEAYFEDMKALNVLPPDLEP-RAT--EHIDEIIEFIEQLIEKGYAYVSDNGDVYFDVSKFK 149 (465)
T ss_pred ----HHHHHHHHHHHHHHhCCCCCcCCc-ccc--ccHHHHHHHHHHHHHCCCEEEecCCcEEEeccccc
Confidence 889999999999999995554333 333 79999999999999999999998 99999998753
No 50
>cd07961 Anticodon_Ia_Ile_ABEc Anticodon-binding domain of archaeal, bacterial, and eukaryotic cytoplasmic isoleucyl tRNA synthetases. This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial, archaeal, and eukaryotic cytoplasmic members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA.
Probab=99.94 E-value=2.5e-26 Score=231.36 Aligned_cols=178 Identities=22% Similarity=0.408 Sum_probs=145.2
Q ss_pred cChHHHHHHHH-HHHHHHhHHHHHHh--cccCCCCCC-CcCCCCCChhhHHHHHHHHHHHHHHHHHHhcccHHHHHHHHH
Q 003799 597 IGPQVLRQMSD-IYRKLRGTLRYLLG--NLHDWRVGN-SISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQ 672 (794)
Q Consensus 597 ~s~~~l~~~~~-~~~kl~Nt~rfll~--nl~~~~~~~-~~~~~~l~~~D~~il~~l~~lv~~v~~~~e~y~f~~ai~~l~ 672 (794)
||++.+++..+ +++||||++||+++ ++.++.+.. ..+...+..+|+|+++++++++++++++|++|+|+.|++.++
T Consensus 1 ~s~~~v~~~~~~f~~KlwN~~rf~l~~~~~~~~~~~~~~~~~~~~~~~D~wil~~l~~~i~~~~~~~e~~~f~~a~~~l~ 80 (183)
T cd07961 1 FSEKGVREVVRKVLLPLWNAYRFFVTYANLDGFDPGKDDDAVASLNVLDRWILSRLNSLIKEVTEEMEAYDLYTAVRALL 80 (183)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccccccccCchhHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 56778888888 99999999999987 666665442 123345788999999999999999999999999999999999
Q ss_pred HHHHHhhhHHHHHhhccccccCCCChHhHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhCCCCccccCCCCCCceeec
Q 003799 673 RFIIVDLSNFYFDVAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAAEFVFES 752 (794)
Q Consensus 673 ~f~~~~lsn~Yle~~K~rly~~~~d~~~r~s~~~vL~~iL~~l~~lLaP~~P~~aEEiw~~L~~~~~~~~~~~~~sV~~~ 752 (794)
.|++. ++++|++.+|+++|++. ++..+++++.++.+++..++++|+||+||+|||+|++++.. .+...+||+.+
T Consensus 81 ~f~~~-~~~~Y~e~~K~~~~~~~-~~~~~~~~~~~l~~~l~~ll~ll~P~~P~~aEElw~~l~~~----~~~~~~si~~~ 154 (183)
T cd07961 81 EFIDE-LTNWYIRRNRKRFWGEE-GDDDKLAAYATLYEVLLTLSRLMAPFTPFITEEIYQNLRRE----LGDAPESVHLL 154 (183)
T ss_pred HHHHH-hhhhHhhhchHHhcCCC-CchhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh----cCCCCCceeee
Confidence 99985 77999999999999875 33456778999999999999999999999999999999742 00012589999
Q ss_pred CCCCCCcccCCCChhHHHHHHHHHHHHHHH
Q 003799 753 KWPVLDEKWRTFPVGEIYFWGKILEVIVVV 782 (794)
Q Consensus 753 ~wP~~~e~~~~~~~~~~~~~~~i~~lR~~v 782 (794)
+||++++.+.+ ++++..++.+.++-..+
T Consensus 155 ~wP~~~~~~~~--~~~~~~~~~l~~~i~~~ 182 (183)
T cd07961 155 DWPEVDESLID--EELEEAMELVREIVELG 182 (183)
T ss_pred cCCCCcccccC--HHHHHHHHHHHHHHHhh
Confidence 99998877665 55666677776665543
No 51
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=99.94 E-value=6.6e-26 Score=250.51 Aligned_cols=127 Identities=17% Similarity=0.178 Sum_probs=111.0
Q ss_pred CCCcEEEEcCCCCCCCcccchHHHhHHHHHHHHHHHHhCCCeeEEeccccCCCchHHHHHHhhchhhhhcCCCHHHHHHH
Q 003799 148 DGENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAK 227 (794)
Q Consensus 148 ~~~~f~i~~~pPy~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G~D~hGlpie~~~~k~~~~~~~~~~~~~~~~~~ 227 (794)
+.-+++++.|.|| +.+||||+++++..|+++||+++.||+|.|+.|+|+||.+|..+++ +++.+|+++
T Consensus 35 ~~v~~YvCGpTvY--~~~HIGhart~V~~Dvl~R~lr~~G~~V~fV~nitD~dDKIi~~A~-------~~g~t~~el--- 102 (411)
T TIGR03447 35 PEAGMYVCGITPY--DATHLGHAATYLTFDLVNRVWRDAGHRVHYVQNVTDVDDPLFERAE-------RDGVDWREL--- 102 (411)
T ss_pred CcceEEEeCCccC--CCcccccchHHHHHHHHHHHHHhcCCceEEeeCCCchhHHHHHHHH-------HcCCCHHHH---
Confidence 3456677777777 8999999999999999999999999999999999999999999987 567889877
Q ss_pred HHHHHHHHHHHHHHHHHHcCCccCCCCccccCChHHHHHHHHHHHHHHHcCCeeeccc----CceeccCC
Q 003799 228 AAKFAKATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKK----PVHWSPSS 293 (794)
Q Consensus 228 ~~~~a~~~~~~~~~~~~~lGi~~dwd~~~~T~d~~~~~~v~~~f~~L~~kGlIy~~~~----~v~w~~~~ 293 (794)
|+++.+.+.+++++|||. ..+.+.+|++. ...+++++++|+++|+||.... .|||+.+.
T Consensus 103 ----a~~y~~~f~~d~~~Lni~-~~d~~~RaTe~--i~~ii~~i~~L~~kG~aY~~~~~~~~~VYFdv~~ 165 (411)
T TIGR03447 103 ----GTSQIDLFREDMEALRVL-PPRDYIGAVES--IDEVIEMVEKLLAAGAAYEVEGPEYPDVYFSIEA 165 (411)
T ss_pred ----HHHHHHHHHHHHHHcCCC-CCCcccCCCCC--HHHHHHHHHHHHHCCCEEecCCCCcCcEEEeccc
Confidence 899999999999999984 34566777765 7999999999999999998876 69998764
No 52
>PLN02946 cysteine-tRNA ligase
Probab=99.94 E-value=1.2e-25 Score=256.67 Aligned_cols=345 Identities=16% Similarity=0.178 Sum_probs=227.2
Q ss_pred CCCCCCcccchHHHhHHHHHHHHHHHHhCCCeeEEeccccCCCchHHHHHHhhchhhhhcCCCHHHHHHHHHHHHHHHHH
Q 003799 158 PPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKAAKFAKATVK 237 (794)
Q Consensus 158 pPy~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G~D~hGlpie~~~~k~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 237 (794)
=|+|.|.+||||+++++..|++.||+++.||+|.|+.|+|+||.+|..++. +.+.+|.++ ++++.+
T Consensus 87 GpTvYd~~HIGhaR~~V~~Dvl~R~Lr~~Gy~V~~V~niTDiDDKIi~~A~-------~~g~~~~el-------a~~y~~ 152 (557)
T PLN02946 87 GVTAYDLSHIGHARVYVTFDVLYRYLKHLGYEVRYVRNFTDVDDKIIARAN-------ELGEDPISL-------SRRYCE 152 (557)
T ss_pred CCccCCCCccccchhhHHHHHHHHHHHhcCCcEEEEECCCCccCHHHHHHH-------HcCCCHHHH-------HHHHHH
Confidence 478999999999999999999999999999999999999999999999987 567888777 999999
Q ss_pred HHHHHHHHcCCccCCCCccccCChHHHHHHHHHHHHHHHcCCeeecccCceeccCCCc---cccccccc---------cC
Q 003799 238 AQMASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRT---ALAEAELE---------YP 305 (794)
Q Consensus 238 ~~~~~~~~lGi~~dwd~~~~T~d~~~~~~v~~~f~~L~~kGlIy~~~~~v~w~~~~~t---~Lae~Eve---------y~ 305 (794)
.+.+++++|||. +..+.|...+|...+++++++|+++|++|.+.+.||||++.-. -||...++ ..
T Consensus 153 ~f~~d~~~LnI~---~p~~~pratehi~~ii~~i~~Li~kG~aY~~~g~VYFdv~~f~~YG~Ls~~~l~~l~~g~rv~~~ 229 (557)
T PLN02946 153 EFLSDMAYLHCL---PPSVEPRVSDHIPQIIDMIKQILDNGCAYRVDGDVYFSVDKFPEYGKLSGRKLEDNRAGERVAVD 229 (557)
T ss_pred HHHHHHHHCCCC---CCCeecCcchhHHHHHHHHHHHHHCCCEEEECCeEEEecCcchhhhhcCCCChhHhhcCCCCCcc
Confidence 999999999994 5567888889999999999999999999999999999997532 12211111 00
Q ss_pred CcccccccceeEEeccCCCCcccccccccCCccceeccCCCCccccccEEEECCCcceeeeeecccccCCCCCcCCCCCC
Q 003799 306 EGHVSRSIYAVFRMVSAPPSTSGLLNEFLPDLGLAVWTTTPWTVPANAAVAVNAKLQYAVVEIQSLLEGDSAAPANKKSR 385 (794)
Q Consensus 306 e~~~~~~~~v~F~l~~~~~~~~~~l~~~~~~~~l~iwTT~PwTi~~n~av~v~p~~~Y~~v~~~~~~~~~s~~~~~~~~~ 385 (794)
+++.++..|+.++-.+. +. +.| .+||.
T Consensus 230 ~~K~np~DFaLWK~~k~-------------ge--~~W-~SPWG------------------------------------- 256 (557)
T PLN02946 230 SRKKNPADFALWKAAKE-------------GE--PFW-DSPWG------------------------------------- 256 (557)
T ss_pred cccCCccccceeccCCC-------------CC--CCc-cCCCC-------------------------------------
Confidence 11223333333322110 00 011 12331
Q ss_pred CCCcccCCcceEeeecccchHHHHHhcCCceEEEeeeccCcccCCeeecCCCCCcccEEeccCcccccCCCCceeecCCC
Q 003799 386 PGNVLKDQKKVFIIVASDLVPTLEAKWGTKLVIKKTLAGSDLENCRYVHPVDNRQCPVVIGGDYITTESGTGLVHTAPGH 465 (794)
Q Consensus 386 ~g~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~G~~L~g~~~~~Pl~~~~~pvvi~~~~V~~~~GTG~Vh~aPaH 465 (794)
.|.+.||--....+--++ ++.++...|
T Consensus 257 ------------------------------------------~GRPGWHIECSaMs~~~l-G~~~DIH~G---------- 283 (557)
T PLN02946 257 ------------------------------------------PGRPGWHIECSAMSAAYL-GHSFDIHGG---------- 283 (557)
T ss_pred ------------------------------------------CCCCcHHHHHHHHHHHHc-CCCeeEecc----------
Confidence 134444431110000001 222222221
Q ss_pred ChhhHHHHHHhCCCccccCCCCCccccccCCCCCccccccchHHHHHHHHhcCCcccccccccccccccCCCCcEEEccc
Q 003799 466 GQEDYVTSLKYGLPILSPVDDEGKFTEEAGKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTKKPTIFRAT 545 (794)
Q Consensus 466 g~~D~~~~~~~gl~i~~~vd~~G~~~~~~~~~~G~~v~~ea~~~ii~~L~~~g~l~~~~~~~h~yp~~WRt~~pii~r~t 545 (794)
|++++.|..++..-..++ ..|... .+| |.+..
T Consensus 284 -----------G~DL~FPHHENEiAQsea--~~g~~~-------------------------a~y---W~H~G------- 315 (557)
T PLN02946 284 -----------GMDLVFPHHENEIAQSCA--ACCDSN-------------------------ISY---WIHNG------- 315 (557)
T ss_pred -----------ccccCCCcccchHHHHHH--HhCCCC-------------------------Cce---eeEee-------
Confidence 455555554432211110 000000 012 43211
Q ss_pred CccccchhhHHHHHHhhhcCeeecCCCCCCCCCCchhhhhhhhcCCCCceecChHHHHHHHHHHHHHHhHHHHHHhcccC
Q 003799 546 EQWFASVEGFRQAAMDAIGQVKWVPPQEAPGYGADVLRLWVSSVDYTGDVMIGPQVLRQMSDIYRKLRGTLRYLLGNLHD 625 (794)
Q Consensus 546 ~QWfi~~~~~~~~~l~~i~~v~~~P~~~~~~yGaD~lRl~las~~~~~Di~~s~~~l~~~~~~~~kl~Nt~rfll~nl~~ 625 (794)
|+.+++ +||+++++|+.. +.+++++||+|++|||+++++|.++++|+++.++.+.+.+.++.++++.+...+..
T Consensus 316 ---~v~~~G--~KMSKSlGN~it-l~dll~~y~~dalR~~lLs~hyr~~l~fs~e~L~~a~~~l~~l~~~~~~~~~~l~~ 389 (557)
T PLN02946 316 ---FVTVDS--EKMSKSLGNFFT-IRQVIDLYHPLALRLFLLGTHYRSPINYSDVQLESASERIFYIYQTLHDCEESLQQ 389 (557)
T ss_pred ---EEEeCC--CCcCCcCCCcCC-HHHHHHhcCccceeeeeeccCCCCCcEecHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 334445 799999998877 45577889999999999999999999999999999999988999888765433221
Q ss_pred CCCCCCcCCCCCChhhHHHHHHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHhhhHHHHHh
Q 003799 626 WRVGNSISYDDLPMIDQYALFQLENIVKNIRESYE-SYQFFKIFQIIQRFIIVDLSNFYFDV 686 (794)
Q Consensus 626 ~~~~~~~~~~~l~~~D~~il~~l~~lv~~v~~~~e-~y~f~~ai~~l~~f~~~~lsn~Yle~ 686 (794)
-. .. .... ..+..+...+..+.+.+.++|+ ++++..|+..|++++. ..|.+++.
T Consensus 390 ~~--~~--~~~~-~~~~~~~~~~~~~~~~f~~Al~DDlntp~Al~~l~~~vk--~~N~~~~~ 444 (557)
T PLN02946 390 HD--ST--FEKD-SVPPDTLNCINKFHDEFVTSMSDDLHTPVALAALSEPLK--TINDLLHT 444 (557)
T ss_pred hc--cc--cccc-ccchhhHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHH--HHHHHhhh
Confidence 00 00 0000 0111223355667788999995 7999999999999997 36777753
No 53
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=99.94 E-value=1.1e-25 Score=247.93 Aligned_cols=124 Identities=17% Similarity=0.185 Sum_probs=110.1
Q ss_pred cEEEEcCCCCCCCcccchHHHhHHHHHHHHHHHHhCCCeeEEeccccCCCchHHHHHHhhchhhhhcCCCHHHHHHHHHH
Q 003799 151 NFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKAAK 230 (794)
Q Consensus 151 ~f~i~~~pPy~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G~D~hGlpie~~~~k~~~~~~~~~~~~~~~~~~~~~ 230 (794)
+++++-|.|| |++||||+++++..|+++||+++.||+|.|+.|+|+||.+|..+++ +++.+|+++
T Consensus 11 ~~YvCGpTvY--~~~HIGh~r~~V~~Dvl~R~lr~~G~~V~~V~nitD~ddKIi~~A~-------~~G~~~~e~------ 75 (384)
T PRK12418 11 TMYVCGITPY--DATHLGHAATYLAFDLVNRVWRDAGHDVHYVQNVTDVDDPLLERAA-------RDGVDWRDL------ 75 (384)
T ss_pred EEEecCCCCC--CCCccchhHHHHHHHHHHHHHHHcCCceEEEEecCCcchHHHHHHH-------HcCCCHHHH------
Confidence 5666665566 9999999999999999999999999999999999999999999987 678889877
Q ss_pred HHHHHHHHHHHHHHHcCCccCCCCccccCChHHHHHHHHHHHHHHHcCCeeeccc----CceeccCC
Q 003799 231 FAKATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKK----PVHWSPSS 293 (794)
Q Consensus 231 ~a~~~~~~~~~~~~~lGi~~dwd~~~~T~d~~~~~~v~~~f~~L~~kGlIy~~~~----~v~w~~~~ 293 (794)
|+++.+.+.+++++|||. ..+.+.+|++. ...+++++++|.++|++|+... .|||+.+.
T Consensus 76 -a~~~~~~f~~d~~~Lni~-~~~~~~raTe~--i~~~~~~i~~L~~kG~aY~~~~~~~~~VYFdv~~ 138 (384)
T PRK12418 76 -AEREIALFREDMEALRVL-PPRDYVGAVES--IPEVVELVEKLLASGAAYVVDDEEYPDVYFSVDA 138 (384)
T ss_pred -HHHHHHHHHHHHHHhCCC-CCCccccCCCC--HHHHHHHHHHHHHCCCEEEeCCCCCccEEEecCc
Confidence 999999999999999973 55677777764 8999999999999999999988 79998875
No 54
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional
Probab=99.93 E-value=7.1e-25 Score=251.22 Aligned_cols=123 Identities=17% Similarity=0.129 Sum_probs=109.3
Q ss_pred EcCCCCCCCcccchHHHhHHHHHHHHHHHHhCCCeeEEeccccCCCchHHHHHHhhchhhhhcCCCHHHHHHHHHHHHHH
Q 003799 155 HDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKAAKFAKA 234 (794)
Q Consensus 155 ~~~pPy~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G~D~hGlpie~~~~k~~~~~~~~~~~~~~~~~~~~~~a~~ 234 (794)
..-=|+|.+.+||||+++++..|+++||+++.||+|.|+.|+|+||.+|..++. +.+.++.++ |++
T Consensus 252 YvCGPTVYd~~HIGHaRt~V~~DVL~R~Lr~~Gy~V~fV~NiTD~DDKII~~A~-------e~G~sp~el-------a~~ 317 (699)
T PRK14535 252 YVCGMTVYDYCHLGHARVMVVFDMIARWLRECGYPLTYVRNITDIDDKIIARAA-------ENGETIGEL-------TAR 317 (699)
T ss_pred EecCCcCCCCCcccchhHHHHHHHHHHHHHHcCCceEEEeCCcccchHHHHHHH-------HcCCCHHHH-------HHH
Confidence 333578899999999999999999999999999999999999999999999987 567888777 999
Q ss_pred HHHHHHHHHHHcCCccCCCCccccCChHHHHHHHHHHHHHHHcCCeeecc-cCceeccCCC
Q 003799 235 TVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGK-KPVHWSPSSR 294 (794)
Q Consensus 235 ~~~~~~~~~~~lGi~~dwd~~~~T~d~~~~~~v~~~f~~L~~kGlIy~~~-~~v~w~~~~~ 294 (794)
+.+.+.+++++|||..+ . +.|...+|...++.++.+|.++|++|++. ..||||+++-
T Consensus 318 y~~~F~~d~~~LnI~~p--~-~~praTeHI~~ii~lI~~LidkG~AYe~~~gsVYFdV~~f 375 (699)
T PRK14535 318 FIQAMHEDADALGVLRP--D-IEPKATENIPQMIAMIETLIQNGKAYPAANGDVYYAVREF 375 (699)
T ss_pred HHHHHHHHHHHcCCCCC--c-EeeCccchHHHHHHHHHHHHHCCCEEEeCCCCEEEecccc
Confidence 99999999999999444 4 46777899999999999999999999874 4899999853
No 55
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=99.93 E-value=1.5e-24 Score=245.42 Aligned_cols=352 Identities=12% Similarity=0.116 Sum_probs=224.6
Q ss_pred EcCCCCCCCcccchHHHhHHHHHHHHHHHHhCCCeeEEec----------cccCCCchHHHHHHhhchhhhhcCCCHHHH
Q 003799 155 HDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVP----------GWDCHGLPIELKVLQSLDEDAKKDLTPSKL 224 (794)
Q Consensus 155 ~~~pPy~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~----------G~D~hGlpie~~~~k~~~~~~~~~~~~~~~ 224 (794)
..-=|+|++.+||||+++++..|++.||+++.||+|.|+. |.|+||.+|..++. +.+.+|.++
T Consensus 27 YvCGpTvy~~~HiGhar~~v~~Dvl~R~l~~~G~~V~~v~NiTDv~hl~~~~De~ddKii~~A~-------~~g~~~~e~ 99 (490)
T PRK14536 27 YGCGPTVYNYAHIGNLRTYVFQDTLRRTLHFLGYRVTHVMNITDVGHLTDDADSGEDKMVKSAQ-------EHGKSVLEI 99 (490)
T ss_pred EeeCCccCCCcccchhHHHHHHHHHHHHHHhcCCceEEEEeeccccccccCCcCCChHHHHHHH-------HcCCCHHHH
Confidence 3345899999999999999999999999999999999997 99999999988776 567888777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCccCCCCccccCChHHHHHHHHHHHHHHHcCCeeecccCceeccCCCcccccccccc
Q 003799 225 RAKAAKFAKATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAEAELEY 304 (794)
Q Consensus 225 ~~~~~~~a~~~~~~~~~~~~~lGi~~dwd~~~~T~d~~~~~~v~~~f~~L~~kGlIy~~~~~v~w~~~~~t~Lae~Evey 304 (794)
|+++.+.+.+++++||| ..+..+ |..++|...+++++.+|+++|++|.....||||+..-. .|
T Consensus 100 -------a~~~~~~f~~d~~~Lni--~~~~~~-~rat~hi~~ii~~i~~L~~kG~aY~~~~~vyFdv~~~~-------~Y 162 (490)
T PRK14536 100 -------AAHYTAAFFRDTARLNI--ERPSIV-CNATEHIQDMIALIKRLEARGHTYCAGGNVYFDIRTFP-------SY 162 (490)
T ss_pred -------HHHHHHHHHHHHHHcCC--CCCcee-cCcccHHHHHHHHHHHHHHCCCEEEECCeEEEeCCccc-------ch
Confidence 99999999999999999 554544 66789999999999999999999999999999995432 23
Q ss_pred CCcccccccceeEEeccCCCCcccccccccCCccceeccCCCCccccccEEEECCCcceeeeeecccccCCCCCcCCCCC
Q 003799 305 PEGHVSRSIYAVFRMVSAPPSTSGLLNEFLPDLGLAVWTTTPWTVPANAAVAVNAKLQYAVVEIQSLLEGDSAAPANKKS 384 (794)
Q Consensus 305 ~e~~~~~~~~v~F~l~~~~~~~~~~l~~~~~~~~l~iwTT~PwTi~~n~av~v~p~~~Y~~v~~~~~~~~~s~~~~~~~~ 384 (794)
. +.+.. .++++.. |.. +.+.+.-+
T Consensus 163 G--~Ls~~----------------~~~~l~~---------------g~~-v~~~~~K~---------------------- 186 (490)
T PRK14536 163 G--SLASA----------------AVEDLQA---------------GAR-IEHDTNKR---------------------- 186 (490)
T ss_pred h--hhcCC----------------CHHHhhc---------------CCc-CCCCCCCC----------------------
Confidence 1 11100 0000000 000 00000000
Q ss_pred CCCCcccCCcceEeeecccchHHHHHhcCCceEEEeeeccCcccCCeeecCCCCCcccEEeccCcccccCCCCceeecCC
Q 003799 385 RPGNVLKDQKKVFIIVASDLVPTLEAKWGTKLVIKKTLAGSDLENCRYVHPVDNRQCPVVIGGDYITTESGTGLVHTAPG 464 (794)
Q Consensus 385 ~~g~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~G~~L~g~~~~~Pl~~~~~pvvi~~~~V~~~~GTG~Vh~aPa 464 (794)
+ ..-+.+|+.. .++.++ .|.| ...-|-
T Consensus 187 --------n-p~DFaLWK~~-----------------------------~~~~~~-~~~W------~SpWG~-------- 213 (490)
T PRK14536 187 --------N-PHDFVLWFTR-----------------------------SKFENH-ALTW------DSPWGR-------- 213 (490)
T ss_pred --------C-chhchhcccc-----------------------------cCCCCC-CCcc------cCCCCC--------
Confidence 0 0000000000 000000 0000 000010
Q ss_pred CChhhHHHHHHhCCCccccCCCCCccccccCCCCCccccccchHHHHHHHHhcCCccccccccccccccc--------CC
Q 003799 465 HGQEDYVTSLKYGLPILSPVDDEGKFTEEAGKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDW--------RT 536 (794)
Q Consensus 465 Hg~~D~~~~~~~gl~i~~~vd~~G~~~~~~~~~~G~~v~~ea~~~ii~~L~~~g~l~~~~~~~h~yp~~W--------Rt 536 (794)
...|.++ ||...+.++|.+ ...+|..-..+.+||+- -+
T Consensus 214 -------------------------------GRPGWHI--ECsaMs~~~lg~-~~DIH~GG~DliFPHHeneiAqs~a~~ 259 (490)
T PRK14536 214 -------------------------------GYPGWHI--ECSAMSMKYLGE-QCDIHIGGVDHIRVHHTNEIAQCEAAT 259 (490)
T ss_pred -------------------------------CCCChHH--HHHHHHHHHcCC-ceeEEeccccCCCcchhhHHHHHHHhc
Confidence 1123333 444444444433 23444444445555541 13
Q ss_pred CCcEEEcccCccccchhhHHHHHHhhhcCeeecCCCCCCC-CCCchhhhhhhhcCCCCceecChHHHHHHHHHHHHHHhH
Q 003799 537 KKPTIFRATEQWFASVEGFRQAAMDAIGQVKWVPPQEAPG-YGADVLRLWVSSVDYTGDVMIGPQVLRQMSDIYRKLRGT 615 (794)
Q Consensus 537 ~~pii~r~t~QWfi~~~~~~~~~l~~i~~v~~~P~~~~~~-yGaD~lRl~las~~~~~Di~~s~~~l~~~~~~~~kl~Nt 615 (794)
+.|..-....+.|+.+++ +||+++++|+.++- +++.+ |+++++|||+++++|.++++|+++.+.++.+.+.+|.++
T Consensus 260 g~~~~~~w~h~g~l~~~g--~KMSKSlGN~itl~-dll~~g~~~~alR~~lls~~yr~~l~Fs~e~l~~a~~~~~rl~~~ 336 (490)
T PRK14536 260 GKPWVRYWLHHEFLLMNK--GKMSKSAGQFLTLS-SLQEKGFQPLDYRFFLLGGHYRSQLAFSWEALKTAKAARRSLVRR 336 (490)
T ss_pred CCCcceEEEEcCEEeecC--ccccccCCCcccHH-HHHhcCCCHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 455555556677888877 89999999988753 36665 999999999999999999999999999999999999998
Q ss_pred HHHHHhcccCCCCCCCcCC-CCCC-hhhHHHHHHHHHHHHHHHHHHh-cccHHHHHHHHHHHHH
Q 003799 616 LRYLLGNLHDWRVGNSISY-DDLP-MIDQYALFQLENIVKNIRESYE-SYQFFKIFQIIQRFII 676 (794)
Q Consensus 616 ~rfll~nl~~~~~~~~~~~-~~l~-~~D~~il~~l~~lv~~v~~~~e-~y~f~~ai~~l~~f~~ 676 (794)
+.-+...+....+....+. .... ..+.-....+..+.+.+.++|+ ++++..|+..|++++.
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~al~dDlntp~Al~~l~~~~~ 400 (490)
T PRK14536 337 VARVVDAARATTGSVRGTLAECAAERVAESRASESELLLTDFRAALEDDFSTPKALSELQKLVK 400 (490)
T ss_pred HHHHHHhhhcccccccccccccccccccchhhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 7654322211000000000 0000 0001112245567788999995 7999999999999985
No 56
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=9.7e-23 Score=224.76 Aligned_cols=324 Identities=21% Similarity=0.320 Sum_probs=229.3
Q ss_pred CCCCCCCcccchHHHhHHHHHHHHHHHHhCCCeeEEeccccCCCchHHHHHHhhchhhhhcCCCHHHHHHHHHHHHHHHH
Q 003799 157 GPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKAAKFAKATV 236 (794)
Q Consensus 157 ~pPy~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G~D~hGlpie~~~~k~~~~~~~~~~~~~~~~~~~~~~a~~~~ 236 (794)
==|+|....||||||++|..|++.||++..||.|.|+..+-+-.-+|- .++.+.+.+..++ +++++
T Consensus 28 CGpTVYd~~HIGhaRt~V~fDvl~R~L~~~Gy~V~yV~NiTDIDDKIi-------~rA~~~g~~~~ev-------~~~~i 93 (464)
T COG0215 28 CGPTVYDYAHIGHARTYVVFDVLRRYLRYLGYKVTYVRNITDIDDKII-------NRAREEGLSIREV-------AERYI 93 (464)
T ss_pred cCCccCCccccccCcceehHHHHHHHHHHhCCeEEEEeccccccHHHH-------HHHHHhCCCHHHH-------HHHHH
Confidence 358999999999999999999999999999999999997766433333 3343566666555 99999
Q ss_pred HHHHHHHHHcCCccCCCCccccCChHHHHHHHHHHHHHHHcCCeeec-ccCceeccCCCc---ccc----------cccc
Q 003799 237 KAQMASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRG-KKPVHWSPSSRT---ALA----------EAEL 302 (794)
Q Consensus 237 ~~~~~~~~~lGi~~dwd~~~~T~d~~~~~~v~~~f~~L~~kGlIy~~-~~~v~w~~~~~t---~La----------e~Ev 302 (794)
+.+.+++..|||..--..|..| +|...+.+++.+|.+||+.|.. ...|+|++++-. .|| .+.+
T Consensus 94 ~~f~~D~~aL~v~~p~~~PraT---e~I~~iI~~I~~LiekG~AY~~~~G~VYFdv~~f~~YG~LS~~~~le~l~~gar~ 170 (464)
T COG0215 94 AAFFEDMDALNVLPPDIEPRAT---EHIDEIIEFIEKLIEKGYAYVADDGDVYFDVSKFKDYGKLSGRDSLEELQAGARV 170 (464)
T ss_pred HHHHHHHHHhCCCCCcccCcHh---hCHHHHHHHHHHHHHCCceEEecCCcEEEecccchhhHhhcCCCChhHHhhcccc
Confidence 9999999999996544556666 8999999999999999999998 678999987531 122 1222
Q ss_pred ccCCcccccccceeEEeccCCCCcccccccccCCccceeccCCCCccccccEEEECCCcceeeeeecccccCCCCCcCCC
Q 003799 303 EYPEGHVSRSIYAVFRMVSAPPSTSGLLNEFLPDLGLAVWTTTPWTVPANAAVAVNAKLQYAVVEIQSLLEGDSAAPANK 382 (794)
Q Consensus 303 ey~e~~~~~~~~v~F~l~~~~~~~~~~l~~~~~~~~l~iwTT~PwTi~~n~av~v~p~~~Y~~v~~~~~~~~~s~~~~~~ 382 (794)
+..+.+.++..|+.++.++..+. ....||..
T Consensus 171 ~~~~~Krnp~DFvLWK~sk~gEp----------------~W~SPWG~--------------------------------- 201 (464)
T COG0215 171 EVDEEKRNPLDFVLWKAAKPGEP----------------SWDSPWGK--------------------------------- 201 (464)
T ss_pred ccccccCCchhheeeccCCCCCC----------------CCCCCCCC---------------------------------
Confidence 22234566677777766543211 13455531
Q ss_pred CCCCCCcccCCcceEeeecccchHHHHHhcCCceEEEeeeccCcccCCeeecCCCCCcccE----EeccCcccccCCCCc
Q 003799 383 KSRPGNVLKDQKKVFIIVASDLVPTLEAKWGTKLVIKKTLAGSDLENCRYVHPVDNRQCPV----VIGGDYITTESGTGL 458 (794)
Q Consensus 383 ~~~~g~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~G~~L~g~~~~~Pl~~~~~pv----vi~~~~V~~~~GTG~ 458 (794)
|.+.||- +|.+ .+ ++.++...|
T Consensus 202 ----------------------------------------------GRPGWHI----ECSaM~~~~L-G~~~DIHgG--- 227 (464)
T COG0215 202 ----------------------------------------------GRPGWHI----ECSAMSTKYL-GETFDIHGG--- 227 (464)
T ss_pred ----------------------------------------------CCCchhH----HHHHHHHHHh-CCCcceecC---
Confidence 4455553 2222 01 222222222
Q ss_pred eeecCCCChhhHHHHHHhCCCccccCCCCCccccccCCCCCccccccchHHHHHHHHhcCCcccccccccccccccCCCC
Q 003799 459 VHTAPGHGQEDYVTSLKYGLPILSPVDDEGKFTEEAGKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTKK 538 (794)
Q Consensus 459 Vh~aPaHg~~D~~~~~~~gl~i~~~vd~~G~~~~~~~~~~G~~v~~ea~~~ii~~L~~~g~l~~~~~~~h~yp~~WRt~~ 538 (794)
|++++.|..++..-..++ ..|...+ -+| |.+..
T Consensus 228 ------------------G~DLiFPHHENEiAQsea--~~g~~~~------------------------a~y---WmH~G 260 (464)
T COG0215 228 ------------------GSDLIFPHHENEIAQSEA--ATGVKPF------------------------AKY---WMHNG 260 (464)
T ss_pred ------------------cccccCCCcccHHHHHHh--hhCCCcc------------------------eeE---eEEcc
Confidence 567777776654332221 1221111 012 54443
Q ss_pred cEEEcccCccccchhhHHHHHHhhhcCeeecCCCCCCCCCCchhhhhhhhcCCCCceecChHHHHHHHHHHHHHHhHHHH
Q 003799 539 PTIFRATEQWFASVEGFRQAAMDAIGQVKWVPPQEAPGYGADVLRLWVSSVDYTGDVMIGPQVLRQMSDIYRKLRGTLRY 618 (794)
Q Consensus 539 pii~r~t~QWfi~~~~~~~~~l~~i~~v~~~P~~~~~~yGaD~lRl~las~~~~~Di~~s~~~l~~~~~~~~kl~Nt~rf 618 (794)
|+.+++ +||+|+++|+..+.+ ++.+|++.+|||++++++|..+++|+++.|+++.+.+++|.|+++.
T Consensus 261 ----------~l~i~g--eKMSKSLGNfiti~d-~l~~~~p~~lR~~lls~HYR~pl~fsee~L~~A~~~l~rl~~~~~~ 327 (464)
T COG0215 261 ----------FLNIDG--EKMSKSLGNFITVRD-LLKKYDPEVLRLFLLSSHYRSPLDFSEELLEEAKKALERLYNALRR 327 (464)
T ss_pred ----------eeeecC--cCcccccCCeeEHHH-HHhhcCHHHHHHHHHHHHhCCccccCHHHHHHHHHHHHHHHHHHHH
Confidence 677777 999999999998877 7888999999999999999999999999999999999999999987
Q ss_pred HHhcccCCCCCCCcCCCCCChhhHHHHHHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHH
Q 003799 619 LLGNLHDWRVGNSISYDDLPMIDQYALFQLENIVKNIRESYE-SYQFFKIFQIIQRFIIV 677 (794)
Q Consensus 619 ll~nl~~~~~~~~~~~~~l~~~D~~il~~l~~lv~~v~~~~e-~y~f~~ai~~l~~f~~~ 677 (794)
+.....+.. .. .+.+..+++.++|+ +|++..|++.|.+++..
T Consensus 328 ~~~~~~~~~---------~~--------~~~~~~~~f~~al~DDfnt~~al~~l~~l~~~ 370 (464)
T COG0215 328 LRDLAGDAE---------LA--------DLKEFEARFREALDDDFNTPKALAVLFELAKE 370 (464)
T ss_pred HHhhccccc---------cc--------hhHHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Confidence 653222211 00 44566777888885 79999999999999864
No 57
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional
Probab=99.89 E-value=3.3e-22 Score=225.27 Aligned_cols=123 Identities=20% Similarity=0.270 Sum_probs=109.3
Q ss_pred EEcCCCCCCCcccchHHHhHHHHHHHHHHHHhCCCeeEE---------eccc-cCCCchHHHHHHhhchhhhhcCCCHHH
Q 003799 154 LHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRY---------VPGW-DCHGLPIELKVLQSLDEDAKKDLTPSK 223 (794)
Q Consensus 154 i~~~pPy~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~---------~~G~-D~hGlpie~~~~k~~~~~~~~~~~~~~ 223 (794)
+..-=|+|.+.+||||+++++..|+++||+++.||+|.| +.|. |+||.+|..++. +.+.++.+
T Consensus 24 mY~CGpTVYd~~HiGh~r~~v~~Dvl~R~l~~~G~~V~~v~NiTDIghltg~~D~gddKIi~~A~-------~~g~~~~e 96 (481)
T PRK14534 24 VYACGPTVYNYAHIGNFRTYIFEDLLIKSLRLLKYNVNYAMNITDIGHLTGDFDDGEDKVVKAAR-------ERGLTVYE 96 (481)
T ss_pred EEeCCCCCCCCCCccchhHHHHHHHHHHHHHHcCCceEEEEeccccccccCCccCCCcHHHHHHH-------HcCCCHHH
Confidence 344467889999999999999999999999999999999 6888 666788988877 66888877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCccCCCCccccCChHHHHHHHHHHHHHHHcCCeeecccCceeccCC
Q 003799 224 LRAKAAKFAKATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSS 293 (794)
Q Consensus 224 ~~~~~~~~a~~~~~~~~~~~~~lGi~~dwd~~~~T~d~~~~~~v~~~f~~L~~kGlIy~~~~~v~w~~~~ 293 (794)
+ |+++.+.+.+++++||| ..+..+.| .++|...++.++.+|.++|++|.....|+||+.+
T Consensus 97 ~-------a~~~~~~f~~d~~~Lni--~~~~~~p~-atehi~~~i~~i~~L~~kG~aY~~~~~vyFdv~~ 156 (481)
T PRK14534 97 I-------SRFFTEAFFDDCKKLNI--VYPDKVLV-ASEYIPIMIEVVKVLEENGFTYFVNGNVYFDTSC 156 (481)
T ss_pred H-------HHHHHHHHHHHHHHcCC--CCCceecC-ccchHHHHHHHHHHHHHCCCEEEECCeEEEeccc
Confidence 7 99999999999999999 56666666 5799999999999999999999999999999987
No 58
>PRK01611 argS arginyl-tRNA synthetase; Reviewed
Probab=99.86 E-value=1.7e-20 Score=217.04 Aligned_cols=126 Identities=17% Similarity=0.243 Sum_probs=109.0
Q ss_pred CCCcEEEEcCCCCCCCcccchHHHhHHHHHHHHHHHHhCCCeeEEeccccCCCchHHHHHHhhchhhhhcCCCHHHHHHH
Q 003799 148 DGENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAK 227 (794)
Q Consensus 148 ~~~~f~i~~~pPy~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G~D~hGlpie~~~~k~~~~~~~~~~~~~~~~~~ 227 (794)
.++++++....|||||++||||+|+.+++|+++|++++.||+|.++.|+|++|.+|...+... ...
T Consensus 109 ~~~~v~Ie~~spnp~g~lHiGH~R~~iigD~laR~lr~~G~~V~~~~~i~D~G~qi~~~a~~~--------------~~~ 174 (507)
T PRK01611 109 KGKKVVVEYVSANPTGPLHVGHLRSAVIGDALARILEFAGYDVTREYYVNDAGTQIGMLIASL--------------ELL 174 (507)
T ss_pred CCCEEEEEecCCCCCCCCcCCchHHHHHHHHHHHHHHHcCCcEEEEeeeCCccHHHHHHHHHH--------------HHH
Confidence 356788999999999999999999999999999999999999999999999999998876532 113
Q ss_pred HHHHHHHHHHHHHHHHHHcCCccCCCCccccCChHHHHHHHHHHHHHHHcCCee-ecccCcee
Q 003799 228 AAKFAKATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIY-RGKKPVHW 289 (794)
Q Consensus 228 ~~~~a~~~~~~~~~~~~~lGi~~dwd~~~~T~d~~~~~~v~~~f~~L~~kGlIy-~~~~~v~w 289 (794)
.+.+++.+++.+++++++||| .+|.++.+.+..+...+.+++.+|.++|++| +..+.++.
T Consensus 175 ~~~~~~~~~~~~~~~l~~LgI--~~D~~~~es~~~~~~~~~~~~~~L~~~G~~y~~~~Ga~~~ 235 (507)
T PRK01611 175 WRKAVDISLDEIKEDLDRLGV--HFDVWFSESELYYNGKVDEVVEDLKEKGLLYVESDGALWV 235 (507)
T ss_pred HHHHHHHHHHHHHHHHHHcCC--eeeEEeecCcchhcchHHHHHHHHHHCCCEEEeeCCcEEE
Confidence 456788999999999999999 6777788888888889999999999999999 65554443
No 59
>PF08264 Anticodon_1: Anticodon-binding domain of tRNA; InterPro: IPR013155 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found valyl, leucyl and isoleucyl tRNA synthetases. It binds to the anticodon of the tRNA.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 4DLP_A 1RQG_A 4ARI_A 4AQ7_D 4ARC_A 4AS1_A 1IVS_B 1GAX_B 2CT8_B 2CSX_A ....
Probab=99.85 E-value=7.7e-21 Score=185.39 Aligned_cols=141 Identities=29% Similarity=0.535 Sum_probs=108.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhHHHHHhhccccccCCCChHhHHHHHHHHHHHHHHHHHHhc
Q 003799 641 DQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIA 720 (794)
Q Consensus 641 D~~il~~l~~lv~~v~~~~e~y~f~~ai~~l~~f~~~~lsn~Yle~~K~rly~~~~d~~~r~s~~~vL~~iL~~l~~lLa 720 (794)
|+|+++++++++++++++|++|+|+.|++.++.|+++++||+|++.+|||+++++.++. |+ ++.++.++++.++++|+
T Consensus 1 D~~il~~~~~~~~~~~~~~e~~~f~~a~~~i~~f~~~~~~n~Yl~~~k~~~~~~~~~~~-~~-~~~~l~~~l~~~~~ll~ 78 (153)
T PF08264_consen 1 DRWILSKLNELIKKVTEAYENYEFNKALKEIMNFIWNDLSNWYLELIKPWLYCKDDDES-RE-AQYTLYEILKILLILLS 78 (153)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHCHHHHHHHHHHHCTTTTCHH-HH-HHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHhcccchhcccchhH-HH-HHHHHHHHHHHHhhccC
Confidence 89999999999999999999999999999999998888999999999999999887776 66 88999999999999999
Q ss_pred cccchHHHHHHHhCCCCccccCCCCCCceeecCCCCCCcccCCCChhH-HHHHHHHHHHHHHHHHHHhhcC
Q 003799 721 PILPHLAEDVWQNLPFAYTLEDGSAAEFVFESKWPVLDEKWRTFPVGE-IYFWGKILEVIVVVTYLNETEG 790 (794)
Q Consensus 721 P~~P~~aEEiw~~L~~~~~~~~~~~~~sV~~~~wP~~~e~~~~~~~~~-~~~~~~i~~lR~~v~~~~e~~~ 790 (794)
|||||+|||+|++|... .. ...+||+.+.||. +....+ .+. ++.++.+.++...+++.....+
T Consensus 79 P~~P~~aEeiw~~l~~~-~~---~~~~si~~~~~p~-~~~~~~--~~~~~~~~~~~~~v~~~i~~~r~~~~ 142 (153)
T PF08264_consen 79 PFMPFIAEEIWQRLKSE-KL---GEKSSIFLEKWPE-DPEFID--EELEEEAFEILKEVVQVIRKIRKEKN 142 (153)
T ss_dssp TTSHHHHHHHHHHCTTH-HT---TSSSSGGGS------GGGGH--HHH-HHHHHHHHHHHHHHHHHHHCCE
T ss_pred CCCcHHHHHHHHHhhhc-cC---CCCCeeeeCCCCC-Chhhhc--HHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 99999999999888321 01 1147899999998 443222 333 4456665666665555554443
No 60
>PF13603 tRNA-synt_1_2: Leucyl-tRNA synthetase, Domain 2; PDB: 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 2BTE_A 2V0G_A 2BYT_A ....
Probab=99.82 E-value=3.4e-21 Score=191.74 Aligned_cols=158 Identities=22% Similarity=0.384 Sum_probs=100.0
Q ss_pred ccccceeEEeccCCCCcccccccccCCccceeccCCCCccccccEEEECCCcceeeeeecccccCCCCCcCCCCCCCCCc
Q 003799 310 SRSIYAVFRMVSAPPSTSGLLNEFLPDLGLAVWTTTPWTVPANAAVAVNAKLQYAVVEIQSLLEGDSAAPANKKSRPGNV 389 (794)
Q Consensus 310 ~~~~~v~F~l~~~~~~~~~~l~~~~~~~~l~iwTT~PwTi~~n~av~v~p~~~Y~~v~~~~~~~~~s~~~~~~~~~~g~~ 389 (794)
+....+.|++... +..|.|+||||+||+|.+.|+++|++.-+.-
T Consensus 7 S~G~~i~F~i~~~-------------~~~i~vFTTrpdTifGvtfials~~H~lv~~----------------------- 50 (185)
T PF13603_consen 7 SEGAEIDFKIKGS-------------NEKIEVFTTRPDTIFGVTFIALSPEHPLVKK----------------------- 50 (185)
T ss_dssp EEEEEEEEEBTTS-------------SCEEEEEES-GGGGGG--EEEEETTSCHHHH-----------------------
T ss_pred cccEEEEEEecCC-------------CCEEEEEECCcchhhCceEEEECCCCHHHHh-----------------------
Confidence 3446678888653 2368899999999999999999999973311
Q ss_pred ccCCcceEeeecccchHHHHHhcCC-c-e---EEEeeeccCcccCCeeecCCCCCcccEEeccCcccccCCCCceeecCC
Q 003799 390 LKDQKKVFIIVASDLVPTLEAKWGT-K-L---VIKKTLAGSDLENCRYVHPVDNRQCPVVIGGDYITTESGTGLVHTAPG 464 (794)
Q Consensus 390 ~~~~~~~~~iv~~~~~~~~~~~~~~-~-~---~~~~~~~G~~L~g~~~~~Pl~~~~~pvvi~~~~V~~~~GTG~Vh~aPa 464 (794)
+.-....+..+.++... . . .......|- +.|.++.||++++++|||+ ++||..++|||+||.+|+
T Consensus 51 --------l~~~~~~l~~fi~~~~~~~~~~~~~~~~~k~Gv-~tg~~aihP~t~~~iPI~v-a~yVl~~yGtgAVmgvPa 120 (185)
T PF13603_consen 51 --------LAENNPELQEFIEKCKKIKNSERNKDFKEKEGV-FTGLYAIHPLTGKKIPIYV-ANYVLMDYGTGAVMGVPA 120 (185)
T ss_dssp --------CTTTHHHHHHHHHHHHTS-HHHHHHCSSS--EE-EEEEEEE-TTTS-EEEEEE-ETTS-TTSTTSEEEE-CC
T ss_pred --------hhhhhhhHHHHHHHHhcCCHhHhhhhccccccC-cCCCEEECCCCCCCccEEE-ECceeecCCcceEEEcCC
Confidence 00001122222222110 0 0 000122333 5688999999999999988 899999999999999999
Q ss_pred CChhhHHHHHHhCCCccccCCC----------------CCccccccCCCCCccccccchHHHHHHHH
Q 003799 465 HGQEDYVTSLKYGLPILSPVDD----------------EGKFTEEAGKFSGLDVLGDGNVAVVKYLD 515 (794)
Q Consensus 465 Hg~~D~~~~~~~gl~i~~~vd~----------------~G~~~~~~~~~~G~~v~~ea~~~ii~~L~ 515 (794)
|+++||+|+++||||+..+|.. +|.+. ++++|.||.. ++|+++|++.|+
T Consensus 121 hD~rD~~FAk~~~lpi~~Vi~~~~~~~~~~~~~~~~~~~G~l~-nS~~f~Gl~~-~eA~~~I~~~Le 185 (185)
T PF13603_consen 121 HDERDFEFAKKYNLPIKQVIKPKDDNEEIDNKQEAYTGDGILI-NSGEFNGLSS-KEAREKIIKKLE 185 (185)
T ss_dssp C-HHHHHHHHHHT------EEBSSSS---STTSS---S--EE--SSGGGTTSBH-HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCeeEEEcCCCCcccccccccCcCCCEEEE-eCCCCCCCCH-HHHHHHHHHHhC
Confidence 9999999999999998765532 25555 4689999999 599999999985
No 61
>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B.
Probab=99.75 E-value=3.5e-18 Score=180.43 Aligned_cols=123 Identities=22% Similarity=0.266 Sum_probs=97.1
Q ss_pred EEcCCCCCCCcccchHHHhHHHHHHHHHHHHhCCCeeEEeccccCCCchHHHHHHhhchhhhhcCCCHHHHHHHHHHHHH
Q 003799 154 LHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKAAKFAK 233 (794)
Q Consensus 154 i~~~pPy~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G~D~hGlpie~~~~k~~~~~~~~~~~~~~~~~~~~~~a~ 233 (794)
+..-=|++...+||||+|+++..|++.||++..||+|.++.+..+-.-+|-.++. +.+.++.++ +.
T Consensus 11 ~Y~CGPTVYd~~HiGhaR~~v~~D~l~R~L~~~g~~V~~V~NiTDiDDKii~~A~-------~~g~~~~el-------a~ 76 (300)
T PF01406_consen 11 MYVCGPTVYDYAHIGHARTYVFFDVLRRYLEYLGYDVTYVMNITDIDDKIIKRAR-------EEGVSPQEL-------AR 76 (300)
T ss_dssp EEEEEEBTTS--BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEB-SSHHHHHHHH-------HTTS-HHHH-------HH
T ss_pred EEcCCCCCCCCCCCcceeeeeeHHHHHHHHHHcCCeEEEEEeccccchHHHHHHH-------hccCCHHHH-------HH
Confidence 3333578899999999999999999999999999999999999887655555554 667788777 89
Q ss_pred HHHHHHHHHHHHcCCccCCCCccccCChHHHHHHHHHHHHHHHcCCeeecc-cCceeccCC
Q 003799 234 ATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGK-KPVHWSPSS 293 (794)
Q Consensus 234 ~~~~~~~~~~~~lGi~~dwd~~~~T~d~~~~~~v~~~f~~L~~kGlIy~~~-~~v~w~~~~ 293 (794)
++.+.+.+++++|||......+..| +|...+.++..+|.++|+.|... +.|+++.+.
T Consensus 77 ~y~~~f~~dm~~Lnv~~p~~~prat---e~i~~ii~~i~~Li~~G~AY~~~~g~VYFdv~~ 134 (300)
T PF01406_consen 77 RYEEEFFEDMKALNVLPPDHYPRAT---EHIPEIIELIEKLIDKGHAYESEDGSVYFDVSK 134 (300)
T ss_dssp HHHHHHHHHHHHTT----SEEEEGG---GGHHHHHHHHHHHHHTTSEEEETTSEEEE-CCG
T ss_pred HHHHHHHHHHHHcCCCCCccccchh---ccHHHHHHHHHHHHHCCCeEEcCCCcEEEeecc
Confidence 9999999999999996655555565 89999999999999999999999 999998863
No 62
>cd07962 Anticodon_Ia_Val Anticodon-binding domain of valyl tRNA synthetases. This domain is found in valyl tRNA synthetases (ValRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ValRS catalyzes the transfer of valine to the 3'-end of its tRNA.
Probab=99.74 E-value=5.9e-17 Score=155.05 Aligned_cols=135 Identities=24% Similarity=0.488 Sum_probs=111.9
Q ss_pred cChHHHHHHHHHHHHHHhHHHHHHhcccCCCCCCCcCCCCCChhhHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Q 003799 597 IGPQVLRQMSDIYRKLRGTLRYLLGNLHDWRVGNSISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFII 676 (794)
Q Consensus 597 ~s~~~l~~~~~~~~kl~Nt~rfll~nl~~~~~~~~~~~~~l~~~D~~il~~l~~lv~~v~~~~e~y~f~~ai~~l~~f~~ 676 (794)
|+++.++++.++++|+||+++|+.++...+.+... +.......|+++++.++++++++.++|++|+|++|++.+++++.
T Consensus 1 ~~~~~~~~~~~~l~k~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~l~~~~~~~~~~~~~~~e~~~~~~al~~i~~~~~ 79 (135)
T cd07962 1 FDEKRVEGGRNFCNKLWNAARFVLMNLEDDDEPEE-DPESLSLADRWILSRLNKTVEEVTEALENYRFSEAATALYEFFW 79 (135)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHcccccCcccc-ccccCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 57888999999999999999998664333322100 22345678999999999999999999999999999999999997
Q ss_pred HhhhHHHHHhhccccccCCCChHhHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhC
Q 003799 677 VDLSNFYFDVAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNL 734 (794)
Q Consensus 677 ~~lsn~Yle~~K~rly~~~~d~~~r~s~~~vL~~iL~~l~~lLaP~~P~~aEEiw~~L 734 (794)
.+++|+|++..+||...+ ++.+..+...++.++++.++++|+||+||+||++|++|
T Consensus 80 ~~~~N~Yi~~~~pW~~~~--~~~~~~~~~~~~~~~l~~l~~lL~P~~P~~ae~l~~~L 135 (135)
T cd07962 80 NDFCDWYLELVKPRLYGE--DEEEKKAARATLYYVLETILRLLHPFMPFITEELWQRL 135 (135)
T ss_pred HHHhHHHHHHhhHHHcCC--ChHHHHHHHHHHHHHHHHHHHHHCccccHHHHHHHhcC
Confidence 669999999999997642 33345567888999999999999999999999999875
No 63
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases. Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.
Probab=99.72 E-value=4.2e-17 Score=168.15 Aligned_cols=124 Identities=19% Similarity=0.231 Sum_probs=108.6
Q ss_pred EEEEcCCCCCCCcccchHHHhHHHHHHHHHHHHhCCCeeEEeccccCCCchHHHHHHhhchhhhhcCCCHHHHHHHHHHH
Q 003799 152 FVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKAAKF 231 (794)
Q Consensus 152 f~i~~~pPy~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G~D~hGlpie~~~~k~~~~~~~~~~~~~~~~~~~~~~ 231 (794)
.++--.+|||||+|||||+|+.+++|+++|++++.||+|.+..|+|++|.+|+..+.+. + .++++
T Consensus 2 v~ve~~spN~~~~~HiGH~R~~vigD~l~R~l~~~G~~V~~~~~~~D~G~qi~~~a~~~-~--------------~~~~~ 66 (212)
T cd00671 2 ILVEFVSANPTGPLHVGHLRNAIIGDSLARILEFLGYDVTREYYINDWGRQIGLLILSL-E--------------KWRKL 66 (212)
T ss_pred eEEEecCCCCCCCccccccHHHHHHHHHHHHHHHCCCcEEEEeccCCcHHHHHHHHHHH-H--------------HHHHH
Confidence 34555799999999999999999999999999999999999999999999999988632 1 15677
Q ss_pred HHHHHHHHHHHHHHcCCccCCCCccccCChHHHHHHHHHHHHHHHcCCeeecccCceeccCCC
Q 003799 232 AKATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSR 294 (794)
Q Consensus 232 a~~~~~~~~~~~~~lGi~~dwd~~~~T~d~~~~~~v~~~f~~L~~kGlIy~~~~~v~w~~~~~ 294 (794)
++.+++.+++++++||| .+|.+.+|++. ...+..++.+|.++|++|+....+++|+.+.
T Consensus 67 ~~~~~~~~~~~~~~L~i--~~d~~~~es~~--~~~~~~~i~~L~~~g~~~~~~g~~~~~~~~~ 125 (212)
T cd00671 67 VEESIKADLETYGRLDV--RFDVWFGESSY--LGLMGKVVELLEELGLLYEEDGALWLDLTEF 125 (212)
T ss_pred HHHHHHHHHHHHHHhCC--cCceecchhhh--hhHHHHHHHHHHHCCCEEEeCCcEEEechhh
Confidence 99999999999999999 57778788764 8899999999999999999988888876543
No 64
>TIGR00456 argS arginyl-tRNA synthetase. This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori.
Probab=99.72 E-value=6.9e-16 Score=180.89 Aligned_cols=136 Identities=13% Similarity=0.185 Sum_probs=99.8
Q ss_pred CCcEEEEcCCCCCCCcccchHHHhHHHHHHHHHHHHhCCCeeEEeccccCCCchHHHHHHhh--chhh------------
Q 003799 149 GENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQS--LDED------------ 214 (794)
Q Consensus 149 ~~~f~i~~~pPy~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G~D~hGlpie~~~~k~--~~~~------------ 214 (794)
++++++.-..|||+|++||||+|+.+++|+++|++++.||+|....-..+.|..+..-+.-. .+..
T Consensus 111 ~~~v~ve~~spn~~~~~hiGh~r~~~~gd~l~r~~~~~g~~v~r~~yinD~G~Q~~~l~~~~~~~~~~~~~~~~~~~~~~ 190 (566)
T TIGR00456 111 NKKIIIEFSSANPAGPLHIGHLRNAIIGDSLARILEFLGYDVIREYYVNDWGRQFGLLALGVEKFGNEKLNEAVKKPDHG 190 (566)
T ss_pred CCeEEEEecCCCCCCCCchhhhHHHHHHHHHHHHHHHCCCCeeEEeeecchHHHHHHHHHHHHHhCCccccCcccCChHH
Confidence 46788888999999999999999999999999999999999998887788887665432110 0000
Q ss_pred --------hh---c-------------C--CCHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCCccccCChHHHHHHH
Q 003799 215 --------AK---K-------------D--LTPSKLRAKAAKFAKATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQI 268 (794)
Q Consensus 215 --------~~---~-------------~--~~~~~~~~~~~~~a~~~~~~~~~~~~~lGi~~dwd~~~~T~d~~~~~~v~ 268 (794)
.+ . . -...+....-+.+++..++.+++++++||| .||.++...+-.|...+.
T Consensus 191 ~~~~Y~~~~~~~~~~~~~~~~~~~~~~~le~~d~~~~~~w~~~~~~~l~~~~~~~~~l~V--~fD~~~~E~e~~~~~~~~ 268 (566)
T TIGR00456 191 LEGFYVEINKRLEENEELEEEARELFVKLESGDEEAIKLWKRLVEYSLEGIKETLARLNI--HFDSFVWEGESVKNGMVP 268 (566)
T ss_pred HHHHHHHHHHHHhhCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHcCC--ceeeeeccccccccccHH
Confidence 00 0 0 001112222234556667889999999999 787777666667788889
Q ss_pred HHHHHHHHcCCeeecccCc
Q 003799 269 EVFGQMSLQGYIYRGKKPV 287 (794)
Q Consensus 269 ~~f~~L~~kGlIy~~~~~v 287 (794)
.++.+|.++|++|.+ ..+
T Consensus 269 ~v~~~L~~~g~~~~~-Ga~ 286 (566)
T TIGR00456 269 KVLEDLKEKGLVVED-GAL 286 (566)
T ss_pred HHHHHHHHCCCEEEc-CCE
Confidence 999999999999966 443
No 65
>KOG2007 consensus Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.71 E-value=1.4e-15 Score=165.87 Aligned_cols=348 Identities=14% Similarity=0.199 Sum_probs=218.3
Q ss_pred CCCCCCcccchHHHhHHHHHHHHHHHH-hCCCeeEEeccccCCCchHHHHHHhhchhhhhcCCCHHHHHHHHHHHHHHHH
Q 003799 158 PPYANGNLHMGHALNKILKDIINRYKL-LQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKAAKFAKATV 236 (794)
Q Consensus 158 pPy~nG~lHiGHa~~~il~Dii~R~~r-~~G~~V~~~~G~D~hGlpie~~~~k~~~~~~~~~~~~~~~~~~~~~~a~~~~ 236 (794)
=|+++..-|||||++|+--||+.|+.+ .-||+|.|++++.+-.-+|-..|.++ ..+..|..+.+. |+ .|.
T Consensus 62 GpTvYD~SHmGHArsYVsfDIlrRiL~dyfgy~V~~vmNiTDVDDKII~RAr~~-----~m~e~~~~l~~~---F~-~~e 132 (586)
T KOG2007|consen 62 GPTVYDSSHMGHARSYVSFDILRRILRDYFGYDVTFVMNITDVDDKIIKRARKE-----EMGEKPLSLSER---FC-YYE 132 (586)
T ss_pred cCcccchhhhhhhhhhhhHHHHHHHHHHHcCcceEEEecccchhHHHHHHhhhh-----hhccchhhHHHH---HH-HHH
Confidence 589999999999999999999999998 89999999998876444444433211 112233333222 33 566
Q ss_pred HHHHHHHHHcCCccCCCCccccCChHHHHHHHHHHHHHHHcCCeeecccCceeccCCCc-cccccc----c-ccC-----
Q 003799 237 KAQMASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRT-ALAEAE----L-EYP----- 305 (794)
Q Consensus 237 ~~~~~~~~~lGi~~dwd~~~~T~d~~~~~~v~~~f~~L~~kGlIy~~~~~v~w~~~~~t-~Lae~E----v-ey~----- 305 (794)
+.+.++|.+|++..- ...|.-.+|...+..+++++.++|+.|.....||++...-. ..+--. . ...
T Consensus 133 ~eF~~DM~~LnvLpP---tv~tRVSeyvp~II~fIqkIIdnG~aY~~dGsVYFdv~kf~~~YgKL~G~~~~~~~gEg~l~ 209 (586)
T KOG2007|consen 133 EEFLQDMAALNVLPP---TVQTRVSEYVPQIIKFIQKIIDNGYAYAVDGSVYFDVDKFPHSYGKLVGQRKNLQEGEGVLS 209 (586)
T ss_pred HHHHHHHHHhCCCCC---cccchhhhchHHHHHHHHHHHhCCceeeeCCcEEEecccccchhhhhcCchhhcccCcCccc
Confidence 788999999999544 34444558999999999999999999999999999886432 111000 0 000
Q ss_pred -CcccccccceeEEeccCCCCcccccccccCCccceeccCCCCccccccEEEECCCcceeeeeecccccCCCCCcCCCCC
Q 003799 306 -EGHVSRSIYAVFRMVSAPPSTSGLLNEFLPDLGLAVWTTTPWTVPANAAVAVNAKLQYAVVEIQSLLEGDSAAPANKKS 384 (794)
Q Consensus 306 -e~~~~~~~~v~F~l~~~~~~~~~~l~~~~~~~~l~iwTT~PwTi~~n~av~v~p~~~Y~~v~~~~~~~~~s~~~~~~~~ 384 (794)
.++.+++.|..++-++.++ .+.-.||.
T Consensus 210 ds~KR~p~DFALWKAsK~gE----------------P~WeSPWG------------------------------------ 237 (586)
T KOG2007|consen 210 DSRKRSPADFALWKASKPGE----------------PSWESPWG------------------------------------ 237 (586)
T ss_pred cccCCChhhhhhhhhcCCCC----------------CCCCCCCC------------------------------------
Confidence 0122233332222222111 01223332
Q ss_pred CCCCcccCCcceEeeecccchHHHHHhcCCceEEEeeeccCcccCCeeecCCCCCcccEEeccCc----ccccCCCCcee
Q 003799 385 RPGNVLKDQKKVFIIVASDLVPTLEAKWGTKLVIKKTLAGSDLENCRYVHPVDNRQCPVVIGGDY----ITTESGTGLVH 460 (794)
Q Consensus 385 ~~g~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~G~~L~g~~~~~Pl~~~~~pvvi~~~~----V~~~~GTG~Vh 460 (794)
.|.+.||- +|.+ +.+++ .+...|
T Consensus 238 -------------------------------------------~GRPGWHI----ECSa-Mas~~lG~~lDIH~G----- 264 (586)
T KOG2007|consen 238 -------------------------------------------KGRPGWHI----ECSA-MASAILGSQLDIHGG----- 264 (586)
T ss_pred -------------------------------------------CCCCCcee----eeHH-HHHHhhccccceecC-----
Confidence 14444553 2222 22221 121111
Q ss_pred ecCCCChhhHHHHHHhCCCccccCCCCCccccccC--CCCCccccccchHHHHHHHHhcCCcccccccccccccccCCCC
Q 003799 461 TAPGHGQEDYVTSLKYGLPILSPVDDEGKFTEEAG--KFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTKK 538 (794)
Q Consensus 461 ~aPaHg~~D~~~~~~~gl~i~~~vd~~G~~~~~~~--~~~G~~v~~ea~~~ii~~L~~~g~l~~~~~~~h~yp~~WRt~~ 538 (794)
|+++..|..++..-..++- .=.+.+ | |-+.
T Consensus 265 ----------------G~DL~FPHHeNEiAQ~eA~~~~~~wVn----------------------------Y---flHt- 296 (586)
T KOG2007|consen 265 ----------------GIDLAFPHHENEIAQSEAAFDDSQWVN----------------------------Y---FLHT- 296 (586)
T ss_pred ----------------cccccCCCcccHHHHHHHHhcCCccce----------------------------e---EEEc-
Confidence 3344444333211110000 000000 1 1000
Q ss_pred cEEEcccCccccchhhHHHHHHhhhcCeeecCCCCCCCCCCchhhhhhhhcCCCCceecChHHHHHHHHHHHHHHhHHHH
Q 003799 539 PTIFRATEQWFASVEGFRQAAMDAIGQVKWVPPQEAPGYGADVLRLWVSSVDYTGDVMIGPQVLRQMSDIYRKLRGTLRY 618 (794)
Q Consensus 539 pii~r~t~QWfi~~~~~~~~~l~~i~~v~~~P~~~~~~yGaD~lRl~las~~~~~Di~~s~~~l~~~~~~~~kl~Nt~rf 618 (794)
=.+.+.+ +||+++++|...+-+ ++.+|.++.||++++.+.|.+.++++++.+..+......+.|.+.-
T Consensus 297 ---------GhL~i~g--~KMSKSLkNFiTIke-~Lk~~sp~qLRl~fl~~~wr~~ldYs~s~m~~a~q~e~~~~~ff~~ 364 (586)
T KOG2007|consen 297 ---------GHLTING--EKMSKSLKNFITIKE-ALKKYSPRQLRLAFLLHQWRSPLDYSDSTMEQALQLEKSLNNFFLD 364 (586)
T ss_pred ---------Ceeeecc--chhhhhhccceeHHH-HHHhcCHHHHHHHHHHHHhcCcCCchHHHHHHHHHHHHHHHHHHHH
Confidence 0123344 889999998766544 6789999999999999999999999999888887777777666543
Q ss_pred HHhcccCCCCCCCcCCCCCChhhHHHHHHHHHHHHHHHHHH-hcccHHHHHHHHHHHHHHhhhHHHHHhhcc
Q 003799 619 LLGNLHDWRVGNSISYDDLPMIDQYALFQLENIVKNIRESY-ESYQFFKIFQIIQRFIIVDLSNFYFDVAKD 689 (794)
Q Consensus 619 ll~nl~~~~~~~~~~~~~l~~~D~~il~~l~~lv~~v~~~~-e~y~f~~ai~~l~~f~~~~lsn~Yle~~K~ 689 (794)
+.. +.+. ..+.+.+.+.+..++..+..+..+|..++ ++++...+++.+.+.+. .+|.|+...+.
T Consensus 365 ~~a-l~~~----~~~~~~~~~~e~~l~~~~~~t~~~vh~al~d~~dT~~v~~~~~~lvs--~~N~~i~~~~~ 429 (586)
T KOG2007|consen 365 VKA-LLRG----AKPFEKLSEKEAELLEDFGKTQTAVHAALCDNFDTPRVMEAIRELVS--QGNAYIRESGE 429 (586)
T ss_pred HHH-HHhc----cchhhccChHHHHHHHhhhhHHHHHHHHHHhccccHHHHHHHHHHHh--hhhHHHHHhcc
Confidence 222 2221 12255678889999999999999998887 79999999999999986 69999998763
No 66
>cd07959 Anticodon_Ia_Leu_AEc Anticodon-binding domain of archaeal and eukaryotic cytoplasmic leucyl tRNA synthetases. This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes archaeal and eukaryotic cytoplasmic members. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA.
Probab=99.68 E-value=8.2e-16 Score=142.90 Aligned_cols=116 Identities=21% Similarity=0.342 Sum_probs=95.4
Q ss_pred cChHHHHHHHHHHHHHHhHHHHHHhcccCCCCCCCcCCCCCChhhHHHHHHHHHHHHHHHHHHhcccHHHHHHHH-HHHH
Q 003799 597 IGPQVLRQMSDIYRKLRGTLRYLLGNLHDWRVGNSISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQII-QRFI 675 (794)
Q Consensus 597 ~s~~~l~~~~~~~~kl~Nt~rfll~nl~~~~~~~~~~~~~l~~~D~~il~~l~~lv~~v~~~~e~y~f~~ai~~l-~~f~ 675 (794)
|+++.+.++.++++|+++.+....+ +.. +...+...|+|+++++++++++++++|++|+|++|++.+ +.|.
T Consensus 1 w~~~~~~~~~~~l~R~~~~~~~~~~---~~~-----~~~~~~~~d~~~~~~~~~~i~~v~~~~~~~~f~~a~~~~~~~~~ 72 (117)
T cd07959 1 FREEEANSAILRLERFYELAEELIE---TEG-----ELEELTFIDRWLLSRLNRLIKETTEAYENMQFREALKEGLYELQ 72 (117)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHh---ccC-----CccccchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 5667788888999999887754222 111 113456789999999999999999999999999999997 7775
Q ss_pred HHhhhHHHHHhhccccccCCCChHhHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhC
Q 003799 676 IVDLSNFYFDVAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNL 734 (794)
Q Consensus 676 ~~~lsn~Yle~~K~rly~~~~d~~~r~s~~~vL~~iL~~l~~lLaP~~P~~aEEiw~~L 734 (794)
+ ++|+|++..|+| ..++++.++++.++++|+||+||+|||+|+.|
T Consensus 73 -~-~~~~Y~~~~~~~------------~~~~~~~~~l~~~~~lL~P~~P~~aeeiw~~~ 117 (117)
T cd07959 73 -N-DLDWYRERGGAG------------MNKDLLRRFIEVWTRLLAPFAPHLAEEIWHEL 117 (117)
T ss_pred -H-HHHHHHHHhCcc------------chHHHHHHHHHHHHHHHcCcchHhHHHHHhhC
Confidence 3 799999998886 23568999999999999999999999999865
No 67
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase. Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.
Probab=99.67 E-value=6.5e-16 Score=169.08 Aligned_cols=125 Identities=16% Similarity=0.252 Sum_probs=95.9
Q ss_pred CCcEEEEcCCCCCCCcccchHHHhHHHHHHHHHHHHhCCCeeEEeccccCC--------CchHHHHHHhhchhhhhcCCC
Q 003799 149 GENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCH--------GLPIELKVLQSLDEDAKKDLT 220 (794)
Q Consensus 149 ~~~f~i~~~pPy~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G~D~h--------Glpie~~~~k~~~~~~~~~~~ 220 (794)
.++|++++|++ |||.+||||++..+..|+++||+|++|++|.+++|+|+| |+|.+ +++.++..-.. -
T Consensus 18 ~~~~~v~tgi~-psG~~HIG~~~e~i~~D~i~R~lr~~G~~v~~v~~~Dd~d~lrKvp~~l~~~--~~~~~G~pi~~--i 92 (353)
T cd00674 18 KEKYVVASGIS-PSGHIHIGNFREVITADLVARALRDLGFEVRLIYSWDDYDRLRKVPPNVPES--YEQYIGMPLSS--V 92 (353)
T ss_pred CCeEEEecCCC-CCCCcccCccHHHHHHHHHHHHHHHcCCCEEEEEEEcCCCcccccccchhhH--HHHhcCccchh--c
Confidence 46799999885 999999999999999999999999999999999999999 35443 44544432111 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCCccccCCh-HHHHHHHHHHHHHHHcCCeee
Q 003799 221 PSKLRAKAAKFAKATVKAQMASFKRYGVWADWNNPYLTLDP-EYEAAQIEVFGQMSLQGYIYR 282 (794)
Q Consensus 221 ~~~~~~~~~~~a~~~~~~~~~~~~~lGi~~dwd~~~~T~d~-~~~~~v~~~f~~L~~kGlIy~ 282 (794)
|..+ ..|.+|++++.+.+++.|++||| +++ ++.|++. ..-...+.++..|.+.+.|..
T Consensus 93 p~p~-g~~~~~~d~~~~~f~~~l~~lgi--~~d-~~~~T~~y~~g~~~~~i~~~L~~~~~I~~ 151 (353)
T cd00674 93 PDPF-GCCESYAEHFERPFEESLEKLGI--EVE-FISQSQMYKSGLYDENILIALEKRDEIMA 151 (353)
T ss_pred hhhc-CCCHHHHHHHHHHHHHHHHHcCC--eee-eeecCCchhhchHHHHHHHHHHHCChHHH
Confidence 2222 23557899999999999999999 555 4455544 444788888889999988864
No 68
>cd07957 Anticodon_Ia_Met Anticodon-binding domain of methionyl tRNA synthetases. This domain is found in methionyl tRNA synthetases (MetRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon (CAU). MetRS catalyzes the transfer of methionine to the 3'-end of its tRNA.
Probab=99.64 E-value=1.5e-15 Score=143.30 Aligned_cols=96 Identities=21% Similarity=0.264 Sum_probs=83.7
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhHHHHHhhccccccCCCChHhHHHHHHHHHHHHHHHH
Q 003799 637 LPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRLYTGGTTSFTRRSCQTVLSAHLLSIV 716 (794)
Q Consensus 637 l~~~D~~il~~l~~lv~~v~~~~e~y~f~~ai~~l~~f~~~~lsn~Yle~~K~rly~~~~d~~~r~s~~~vL~~iL~~l~ 716 (794)
+...|+|+++++++++++++++|++|+|++|++.+++|+. ++|+|++..|||.+.++.+..+.+.+..++.++++.++
T Consensus 34 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~n~y~~~~kpw~~~~~~~~~~~~~~l~~~~~~l~~~~ 111 (129)
T cd07957 34 LTEEDEELLEEAEELLEEVAEAMEELEFRKALEEIMELAR--AANKYIDETAPWKLAKEEDPERLATVLYVLLELLRILA 111 (129)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH--HHHhhhccCCCHHHHccCCHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999999999984 89999999999987753233344555667888889999
Q ss_pred HHhccccchHHHHHHHhC
Q 003799 717 RVIAPILPHLAEDVWQNL 734 (794)
Q Consensus 717 ~lLaP~~P~~aEEiw~~L 734 (794)
++|+|||||+|||+|+.|
T Consensus 112 ~lL~P~~P~~aeei~~~l 129 (129)
T cd07957 112 ILLSPFMPETAEKILDQL 129 (129)
T ss_pred HHhcCCCChHHHHHHHhC
Confidence 999999999999999875
No 69
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.62 E-value=1.4e-15 Score=156.18 Aligned_cols=93 Identities=22% Similarity=0.181 Sum_probs=82.6
Q ss_pred CCCcEEEEcCCCCCCCcccchHHHhHHHHHHHHHHHHhCCCeeEEeccccCCCchHHHHHHhhchhhhhcCCCHHHHHHH
Q 003799 148 DGENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAK 227 (794)
Q Consensus 148 ~~~~f~i~~~pPy~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G~D~hGlpie~~~~k~~~~~~~~~~~~~~~~~~ 227 (794)
++.+++++.|.|| |.+||||++++++.|+++||+|++|++|.|+.|+|+||.||+.+++ +.+.+|.++
T Consensus 19 ~~~~~y~~gpt~y--~~~HiGH~r~~v~~Dvl~R~lr~~G~~V~~~~g~dd~g~ki~~~A~-------~~g~~p~e~--- 86 (213)
T cd00672 19 GLVTMYVCGPTVY--DYAHIGHARTYVVFDVLRRYLEDLGYKVRYVQNITDIDDKIIKRAR-------EEGLSWKEV--- 86 (213)
T ss_pred CCceEEEeCCccC--CCcccccchhHHHHHHHHHHHHhcCCeeEEEeecCCCCCHHHHHHH-------HcCCCHHHH---
Confidence 5667887766565 7899999999999999999999999999999999999999999988 457788776
Q ss_pred HHHHHHHHHHHHHHHHHHcCCccCC-CCcccc
Q 003799 228 AAKFAKATVKAQMASFKRYGVWADW-NNPYLT 258 (794)
Q Consensus 228 ~~~~a~~~~~~~~~~~~~lGi~~dw-d~~~~T 258 (794)
++++.+.+++++++||| .. |.+.+|
T Consensus 87 ----~~~~~~~f~~~~~~l~i--~~~d~~~rt 112 (213)
T cd00672 87 ----ADYYTKEFFEDMKALNV--LPPDVVPRV 112 (213)
T ss_pred ----HHHHHHHHHHHHHHcCC--CCCCcceee
Confidence 99999999999999999 56 778888
No 70
>cd07958 Anticodon_Ia_Leu_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial leucyl tRNA synthetases. This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes bacterial and eukaryotic mitochondrial members, as well as LeuRS from the archaeal Halobacteria. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA.
Probab=99.56 E-value=3.4e-14 Score=131.70 Aligned_cols=117 Identities=19% Similarity=0.278 Sum_probs=94.8
Q ss_pred cChHHHHHHHHHHHHHHhHHHHHHhcccCCCCCCCcCCCCCChhhHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Q 003799 597 IGPQVLRQMSDIYRKLRGTLRYLLGNLHDWRVGNSISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFII 676 (794)
Q Consensus 597 ~s~~~l~~~~~~~~kl~Nt~rfll~nl~~~~~~~~~~~~~l~~~D~~il~~l~~lv~~v~~~~e~y~f~~ai~~l~~f~~ 676 (794)
|+++.++++.++++|++|.++...+.. .|.. +...+...|+|++++++++++++.++|++|+|++|++.+++|++
T Consensus 1 w~~~~~~~~~n~l~R~~~~~~~~~~~~---~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~ 75 (117)
T cd07958 1 WSDSGVEGAYRFLNRVWRLVTELAEAL---AAPA--AAAELSEEDKELRRKLHKTIKKVTEDIERLRFNTAIAALMELVN 75 (117)
T ss_pred CCcchhHHHHHHHHHHHHHHHHHHhhc---cccc--cccccchhhHHHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHH
Confidence 567788999999999999886533221 1110 01245678999999999999999999999999999999999986
Q ss_pred HhhhHHHHHhhccccccCCCChHhHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhC
Q 003799 677 VDLSNFYFDVAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNL 734 (794)
Q Consensus 677 ~~lsn~Yle~~K~rly~~~~d~~~r~s~~~vL~~iL~~l~~lLaP~~P~~aEEiw~~L 734 (794)
..|.|++..+| .+.++.++++.++++|+||+||+|||+|++|
T Consensus 76 --~~n~~~~~~~p--------------~~~~~~~~l~~~~~lL~P~~P~~aeei~~~l 117 (117)
T cd07958 76 --ALYKYKKKDAQ--------------HAAVLREALETLVLLLAPFAPHIAEELWEEL 117 (117)
T ss_pred --HHHHhhccccc--------------hHHHHHHHHHHHHHHHcccchHHHHHHHhhC
Confidence 47888765332 4567899999999999999999999999875
No 71
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed
Probab=99.46 E-value=8.2e-14 Score=160.75 Aligned_cols=127 Identities=13% Similarity=0.101 Sum_probs=92.0
Q ss_pred CCcEEEEcCCCCCCCcccchHHHhHHHHHHHHHHHHhCCCeeEEeccccCCC--------chHHHHHHhhchhhhhcCCC
Q 003799 149 GENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHG--------LPIELKVLQSLDEDAKKDLT 220 (794)
Q Consensus 149 ~~~f~i~~~pPy~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G~D~hG--------lpie~~~~k~~~~~~~~~~~ 220 (794)
++.+++.+|+ +|||.+||||++..+..|+++|++|+.|++|.+++|+|+|| +|....+.+.++..-..-.+
T Consensus 22 ~~~~~~~~g~-~psG~~HiG~~~e~~~~d~v~r~lr~~G~~v~~i~~~Dd~d~lRkvp~~~p~~~~~~~~~G~pl~~~p~ 100 (510)
T PRK00750 22 KPPVVVETGI-GPSGLPHIGNFREVARTDMVRRALRDLGIKTRLIFFSDDMDGLRKVPDNVPNQEMLEEYLGKPLTEIPD 100 (510)
T ss_pred CCcEEEEeCC-CCCCCcccccccchhhHHHHHHHHHHcCCcEEEEEEEecCCcccccCCCCCchHHHHHhcCcccccCCC
Confidence 3458889877 69999999999999999999999999999999999999998 66643455555543111112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCCccccCChHHH-HHHHHHHHHHHHcCCeee
Q 003799 221 PSKLRAKAAKFAKATVKAQMASFKRYGVWADWNNPYLTLDPEYE-AAQIEVFGQMSLQGYIYR 282 (794)
Q Consensus 221 ~~~~~~~~~~~a~~~~~~~~~~~~~lGi~~dwd~~~~T~d~~~~-~~v~~~f~~L~~kGlIy~ 282 (794)
|.. . +..|++++.+.+++.++++|| +++ ++.+++.... .....+...|.+.+.|.+
T Consensus 101 p~G--~-~~~~~~~~~~~~~~~~~~~gi--~~d-~~~~t~~y~~g~~~~~i~~~l~~~~~i~~ 157 (510)
T PRK00750 101 PFG--C-HESYAEHFNAPLREFLDRFGI--EYE-FISATECYKSGRYDEAILTALENRDEIME 157 (510)
T ss_pred CCC--C-chHHHHHHHHHHHHHHHHcCC--ceE-EEehhhhhccCchHHHHHHHHHhHHHHHH
Confidence 222 2 577899999999999999999 666 4444443322 344455555566665543
No 72
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.44 E-value=3.2e-11 Score=139.97 Aligned_cols=133 Identities=21% Similarity=0.299 Sum_probs=102.1
Q ss_pred CCcEEEEcCCCCCCCcccchHHHhHHHHHHHHHHHHhCCCeeEEeccccCCCchHHHHHH---hhch-------------
Q 003799 149 GENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVL---QSLD------------- 212 (794)
Q Consensus 149 ~~~f~i~~~pPy~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G~D~hGlpie~~~~---k~~~------------- 212 (794)
+++.+|---=|||+|+|||||+||.|++|+++|..+..||+|....-.++.|..|..-+. +...
T Consensus 116 ~~kV~iE~sSaNptkplHiGHlR~aiiGDsLaril~~~Gy~V~r~~yvnD~G~Q~~~l~~~~~~~~~e~~~~~~~~~~~l 195 (577)
T COG0018 116 GKKVVIEYSSANPTGPLHIGHLRNAIIGDSLARILEFLGYDVTRENYVNDWGTQIGMLALSYEKRGREALGLTPEPDGYL 195 (577)
T ss_pred CCEEEEEEeCCCCCCCcccchhhhhHHHHHHHHHHHHcCCCeeEEeeECcHHHHHHHHHHHHHHhccccccCCCCcchHH
Confidence 467777778999999999999999999999999999999999999999999987764211 0000
Q ss_pred --------hhhhcCCCH--HHHH-------------HHHHHHHHHHHHHHHHHHHHcCCccCCCCccccCChHHHHHHHH
Q 003799 213 --------EDAKKDLTP--SKLR-------------AKAAKFAKATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQIE 269 (794)
Q Consensus 213 --------~~~~~~~~~--~~~~-------------~~~~~~a~~~~~~~~~~~~~lGi~~dwd~~~~T~d~~~~~~v~~ 269 (794)
+.-.++.+. .+.+ +.-+.+++..++.+++++.+||| .+|.++...+-.+...+.+
T Consensus 196 g~~y~~i~~~~~~~~~~~~~~~~~~~~k~e~~d~~~~lw~~~v~~~l~~~k~~l~~l~V--~fD~~~~E~e~~~~~~~~~ 273 (577)
T COG0018 196 GEYYVKIAKDLEEDPGNDEEEAREEVEKLESGDEEAELWRKFVDLSLEGIKETLDRLGV--KFDVYDSEGESFYNGKVEK 273 (577)
T ss_pred HHHHHHHHHHHHhCcccchHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHhCc--ccceeeccchhhhcccHHH
Confidence 000011110 1111 11234667778899999999999 9999998888888889999
Q ss_pred HHHHHHHcCCeeec
Q 003799 270 VFGQMSLQGYIYRG 283 (794)
Q Consensus 270 ~f~~L~~kGlIy~~ 283 (794)
++..|.++|++|+.
T Consensus 274 vv~~L~~~~~~~e~ 287 (577)
T COG0018 274 VVEDLEEKGLLYED 287 (577)
T ss_pred HHHHHHhcCCEeee
Confidence 99999999999983
No 73
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=99.33 E-value=2.7e-10 Score=133.57 Aligned_cols=136 Identities=11% Similarity=0.148 Sum_probs=97.1
Q ss_pred CCcEEEEcCCCCCCCcccchHHHhHHHHHHHHHHHHhCCCeeEEeccccCCCchHHHHHH--hhchhhh-----------
Q 003799 149 GENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVL--QSLDEDA----------- 215 (794)
Q Consensus 149 ~~~f~i~~~pPy~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G~D~hGlpie~~~~--k~~~~~~----------- 215 (794)
+++.+|--.=|||+|+||+||+||.+++|+++|..+..||+|....-.++.|..+..-+. +.++...
T Consensus 112 ~~~v~vE~sSpNp~kplHvGH~R~aiiGd~l~ril~~~G~~V~r~nyinD~G~Q~~~l~~~~~~~~~~~~~~~~~~~~l~ 191 (562)
T PRK12451 112 EKTVVIDYSSPNIAKPFSMGHLRSTMIGNALKHIAEKCGYEVVGINYIGDWGTQFGKLITAYKKWGNEAVVKEDPIRELF 191 (562)
T ss_pred CCEEEEEecCCCCCCCcccchhhhHHHHHHHHHHHHHCCCCeEEEeeecCchHHHHHHHHHHHHhCCccccccCchHHHH
Confidence 456777778999999999999999999999999999999999999988999987765332 1111100
Q ss_pred -------h-cCCCH-----------------HHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCCccccCChHHHHHHHHH
Q 003799 216 -------K-KDLTP-----------------SKLRAKAAKFAKATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQIEV 270 (794)
Q Consensus 216 -------~-~~~~~-----------------~~~~~~~~~~a~~~~~~~~~~~~~lGi~~dwd~~~~T~d~~~~~~v~~~ 270 (794)
+ .+.++ .+..+..+.+++..++.+++++++||| .|| .+. -+..|...+.++
T Consensus 192 ~~Y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~l~~~~~~~~~l~V--~fD-~~~-~es~~~~~~~~v 267 (562)
T PRK12451 192 KLYVQFHEEVKDDEELEEEGRAWFKKLEEGDEEAVELWNWFRHESLKEFSRIYELLGV--EFT-NFQ-GEAFYNDLMEDF 267 (562)
T ss_pred HHHHHHHHhhccChhHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCC--Cce-eec-chHhhhhhHHHH
Confidence 0 00000 011111234456667889999999999 555 222 344677778999
Q ss_pred HHHHHHcCCeeecccCce
Q 003799 271 FGQMSLQGYIYRGKKPVH 288 (794)
Q Consensus 271 f~~L~~kGlIy~~~~~v~ 288 (794)
+.+|.++|++|+....++
T Consensus 268 ~~~L~~~g~~~e~dGa~~ 285 (562)
T PRK12451 268 IGILEEHDLLEESEGALV 285 (562)
T ss_pred HHHHHHCCCEEecCCeEE
Confidence 999999999998755543
No 74
>cd07375 Anticodon_Ia_like Anticodon-binding domain of class Ia aminoacyl tRNA synthetases and similar domains. This domain is found in a variety of class Ia aminoacyl tRNA synthetases, C-terminal to the catalytic core domain. It recognizes and specifically binds to the anticodon of the tRNA. Aminoacyl tRNA synthetases catalyze the transfer of cognate amino acids to the 3'-end of their tRNAs by specifically recognizing cognate from non-cognate amino acids. Members include valyl-, leucyl-, isoleucyl-, cysteinyl-, arginyl-, and methionyl-tRNA synthethases. This superfamily also includes a domain from MshC, an enzyme in the mycothiol biosynthetic pathway.
Probab=99.33 E-value=2e-11 Score=112.59 Aligned_cols=116 Identities=23% Similarity=0.293 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhcccCCCCCCCcCCCCCChhhHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhh
Q 003799 600 QVLRQMSDIYRKLRGTLRYLLGNLHDWRVGNSISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDL 679 (794)
Q Consensus 600 ~~l~~~~~~~~kl~Nt~rfll~nl~~~~~~~~~~~~~l~~~D~~il~~l~~lv~~v~~~~e~y~f~~ai~~l~~f~~~~l 679 (794)
+.++++.++++++||+++++.+...+..+.. +.......|+|++++++.++++++++|++|+|++|++.+++|++. +
T Consensus 2 ~~v~~~~~~~n~~~r~~~~~~~~~~~~~~~~--~~~~~~~~d~~l~~~~~~~~~~~~~~~e~~~~~~a~~~i~~~~~~-~ 78 (117)
T cd07375 2 ERLKQARAFLNRLYRLLSFFRKALGGTQPKW--DNELLEEADRELLARLQEFIKRTTNALEALDPTTAVQELFKFTNE-L 78 (117)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCCCCCc--ChhhcCHhhHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-c
Confidence 4577888999999999998766554432210 011335679999999999999999999999999999999999964 4
Q ss_pred hHHHHHhhccccccCCCChHhHHHHHHHHHHHHHHHHHHhcccc
Q 003799 680 SNFYFDVAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPIL 723 (794)
Q Consensus 680 sn~Yle~~K~rly~~~~d~~~r~s~~~vL~~iL~~l~~lLaP~~ 723 (794)
|+|++..|||.+.+. ....+..++++++..++++|+|||
T Consensus 79 -n~y~~~~~pw~~~~~----~~~~~~~~~~~~l~~l~~lL~P~~ 117 (117)
T cd07375 79 -NWYLDELKPALQTEE----LREAVLAVLRAALVVLTKLLAPFT 117 (117)
T ss_pred -cHHHHHhhHHHcCch----hHHHHHHHHHHHHHHHHHHHcCCC
Confidence 999999999998652 234566789999999999999996
No 75
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete. This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set.
Probab=99.25 E-value=2.7e-11 Score=139.12 Aligned_cols=96 Identities=18% Similarity=0.206 Sum_probs=74.7
Q ss_pred CcEEEEcCCCCCCCcccchHHHhHHHHHHHHHHHHhCCCeeEEeccccCC--------CchHHHHHHhhchhhhhcCCCH
Q 003799 150 ENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCH--------GLPIELKVLQSLDEDAKKDLTP 221 (794)
Q Consensus 150 ~~f~i~~~pPy~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G~D~h--------Glpie~~~~k~~~~~~~~~~~~ 221 (794)
+++++.+|.+ |||.+||||++..+..|+++|++|++|++|.+++|+|+| ++| ...++.++..--.--+|
T Consensus 18 ~~~~~~tg~~-psG~~HiG~~~e~~~~d~v~r~~r~~g~~~~~i~~~Dd~D~lRKvp~~~p--~~~~~ylG~Pl~~vpdp 94 (515)
T TIGR00467 18 NLYTVASGIT-PSGHIHIGNFREVITADAIARALRDSGSEARFIYIADNYDPLRKVYPFLP--EELETYLGMPLTRIPDP 94 (515)
T ss_pred CeEEEecCCC-CCCCccccchhhhhHHHHHHHHHHHcCCCEEEEEEEcCCccccccccccc--HHHHHhCCCcceecCCC
Confidence 4799999888 999999999999999999999999999999999999999 444 12334443321111123
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCccC
Q 003799 222 SKLRAKAAKFAKATVKAQMASFKRYGVWAD 251 (794)
Q Consensus 222 ~~~~~~~~~~a~~~~~~~~~~~~~lGi~~d 251 (794)
... |..|++.+...+.+.|..||+..+
T Consensus 95 ~g~---~~s~~~h~~~~~~~~l~~~gi~~e 121 (515)
T TIGR00467 95 EGC---KTSYAEHFLIPFLESLPVLGINPE 121 (515)
T ss_pred CCC---cHHHHHHHHHHHHHHHHHcCCeEE
Confidence 221 467899999999999999999443
No 76
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase. Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.21 E-value=4e-11 Score=115.97 Aligned_cols=76 Identities=21% Similarity=0.156 Sum_probs=66.8
Q ss_pred EcCCCCCCCcccchHHHhHHHHHHHHHHHHhCCCeeEEeccccCCCchHHHHHHhhchhhhhcCCCHHHHHHHHHHHHHH
Q 003799 155 HDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKAAKFAKA 234 (794)
Q Consensus 155 ~~~pPy~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G~D~hGlpie~~~~k~~~~~~~~~~~~~~~~~~~~~~a~~ 234 (794)
+.+.|||||.+||||+++.++.|+++||+|+.|++|.++.|+|++|.++...+. +.+..++++ ++.
T Consensus 2 ~~~~p~~~~~~HlGh~~~~~~~d~~~r~lr~~G~~v~~~~~~dd~~~~~~~~a~-------~~~~~~~~~-------~~~ 67 (143)
T cd00802 2 TFSGITPNGYLHIGHLRTIVTFDFLAQAYRKLGYKVRCIALIDDAGGLIGDPAN-------KKGENAKAF-------VER 67 (143)
T ss_pred EecCCCCCCCccHhHHHHHHHHHHHHHHHHHcCCCeEEEeeeCCCchHHHHHHH-------hcCCCHHHH-------HHH
Confidence 457899999999999999999999999999999999999999999999999876 345566655 777
Q ss_pred HHHHHHHHHH
Q 003799 235 TVKAQMASFK 244 (794)
Q Consensus 235 ~~~~~~~~~~ 244 (794)
+++.++++++
T Consensus 68 ~~~~~~~~~~ 77 (143)
T cd00802 68 WIERIKEDVE 77 (143)
T ss_pred HHHHHHHHHH
Confidence 8888888777
No 77
>PLN02286 arginine-tRNA ligase
Probab=99.08 E-value=3.8e-08 Score=115.81 Aligned_cols=134 Identities=14% Similarity=0.181 Sum_probs=96.3
Q ss_pred CCcEEEEcCCCCCCCcccchHHHhHHHHHHHHHHHHhCCCeeEEeccccCCCchHHHHHHhh---chhhh-hc-------
Q 003799 149 GENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQS---LDEDA-KK------- 217 (794)
Q Consensus 149 ~~~f~i~~~pPy~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G~D~hGlpie~~~~k~---~~~~~-~~------- 217 (794)
+++.++--.=|||+|+|||||+||.+++|+++|..+..||+|....-.++.|..+..-+... .+... ..
T Consensus 116 ~~~v~VEfsSpNp~kplHvGHlRsaiiGdsLaril~~~G~~V~r~nyinD~G~Qi~~l~~~~~~~~~~~~~~~~~~i~~l 195 (576)
T PLN02286 116 VKRAVVDFSSPNIAKEMHVGHLRSTIIGDTLARMLEFSGVEVLRRNHVGDWGTQFGMLIEHLFEKFPNWESVSDQAIGDL 195 (576)
T ss_pred CceEEEEecCCCCCCCCccccccchhhHHHHHHHHHHcCCceEEEEeecchHHHHHHHHHHHHHhcCcccccCcccHHHH
Confidence 35677777899999999999999999999999999999999999988889998777543211 11000 00
Q ss_pred ---------CC-CHHHHHHHH------------------HHHHHHHHHHHHHHHHHcCCccCCCCccccCChHHHHHHHH
Q 003799 218 ---------DL-TPSKLRAKA------------------AKFAKATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQIE 269 (794)
Q Consensus 218 ---------~~-~~~~~~~~~------------------~~~a~~~~~~~~~~~~~lGi~~dwd~~~~T~d~~~~~~v~~ 269 (794)
.+ ...++.+.+ +.+++..+..+++.+.+||| .+|. + -+..|...+..
T Consensus 196 ~~~Y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~lw~~~~~~~~~~~~~~y~~l~V--~fd~-~--ges~y~~~~~~ 270 (576)
T PLN02286 196 QEFYKAAKKRFDEDEEFKARAQQAVVRLQGGDPEYRAAWAKICEISRREFEKVYQRLRV--ELEE-K--GESFYNPYIPG 270 (576)
T ss_pred HHHHHHhhhhccCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhCC--eeee-c--CchhhhhhHHH
Confidence 00 011233322 24455556789999999999 4554 1 34457777899
Q ss_pred HHHHHHHcCCeeecccCc
Q 003799 270 VFGQMSLQGYIYRGKKPV 287 (794)
Q Consensus 270 ~f~~L~~kGlIy~~~~~v 287 (794)
++..|.++|++|+.....
T Consensus 271 vi~~L~~~g~~~e~dGa~ 288 (576)
T PLN02286 271 VIEELESKGLVVESDGAR 288 (576)
T ss_pred HHHHHHHCCCEEeeCCce
Confidence 999999999999875544
No 78
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B.
Probab=98.85 E-value=2e-08 Score=111.50 Aligned_cols=138 Identities=18% Similarity=0.288 Sum_probs=94.2
Q ss_pred CCCcEEEEcCCCCCCCcccchHHHhHHHHHHHHHHHHhCCCeeEEeccccCCCchHHHHHHhh--chh------------
Q 003799 148 DGENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQS--LDE------------ 213 (794)
Q Consensus 148 ~~~~f~i~~~pPy~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G~D~hGlpie~~~~k~--~~~------------ 213 (794)
.+++.+|--.=|||+|+|||||+||.+++|+++|..+..||+|....-..+.|..+..-+... .+.
T Consensus 18 ~~~kv~VE~sSpNp~kplHvGHlR~~iiGd~laril~~~G~~V~r~nyigD~G~Q~~~l~~~~~~~~~~~~~~~~~~~~l 97 (354)
T PF00750_consen 18 KGKKVVVEFSSPNPTKPLHVGHLRNTIIGDSLARILEAAGYDVTRENYIGDWGTQIGLLAASYKKFGDEELLEEDPIKHL 97 (354)
T ss_dssp TSEEEEEEE---BTTSS-BHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEBTTSHHHHHHHHHHHHHHHHHTSHSSCHHHH
T ss_pred CCCEEEEEecCCCCCCCCcCCcchhhhhhHHHHHHHHHcCCeeeeEEEECCCCHHHHHHHHHHHhhhhhhhcccccccch
Confidence 456777777899999999999999999999999999999999999999999999876421100 000
Q ss_pred ----------hhhcCC---CHHHHHHH--------------HHHHHHH-HHHHHHHHHHHcCCccCCCCccccCChHHHH
Q 003799 214 ----------DAKKDL---TPSKLRAK--------------AAKFAKA-TVKAQMASFKRYGVWADWNNPYLTLDPEYEA 265 (794)
Q Consensus 214 ----------~~~~~~---~~~~~~~~--------------~~~~a~~-~~~~~~~~~~~lGi~~dwd~~~~T~d~~~~~ 265 (794)
...... .+.++.+. .+++... ..+.++++++++|+ .+|..+...+-.+..
T Consensus 98 ~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~~~~~~~~~~k~~l~~l~i--~fDv~~~E~Es~~~~ 175 (354)
T PF00750_consen 98 EDLYVGANKRDEADEIAEKEPEELEEEAREYLKKLEQGDEEFRELWQKYILEWSKETLQRLYI--RFDVWFDESESFYSG 175 (354)
T ss_dssp HHHHHHHHHHHHHTTCSSGCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHHHHHHHHHHHHTT-----SEEEEHCHHHHTT
T ss_pred hhhhhhhhhhhhhhhhccccccccccccceeeeecccccHHHHHHHHHHHHHHHHHHHHHHHH--HhCcCcccchhhhhh
Confidence 000000 00011111 2333344 66778999999999 777887776667888
Q ss_pred HHHHHHHHHHHcCCeeecccCc
Q 003799 266 AQIEVFGQMSLQGYIYRGKKPV 287 (794)
Q Consensus 266 ~v~~~f~~L~~kGlIy~~~~~v 287 (794)
.+.+++.+|.++|++|+....+
T Consensus 176 ~v~~vl~~L~e~g~~~~~dGa~ 197 (354)
T PF00750_consen 176 KVDEVLERLKEKGLLYESDGAL 197 (354)
T ss_dssp HHHHHHHHHHCTTTEEEETTEE
T ss_pred HHHHHHHHHHhCCcEEecCCcE
Confidence 8999999999999999865443
No 79
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase. Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=98.42 E-value=6.3e-07 Score=93.28 Aligned_cols=91 Identities=20% Similarity=0.315 Sum_probs=69.1
Q ss_pred CCCCCCcccchHHHhHHHHHHHHHHHHhCCCeeEEeccccCCCchHHHHHHhhchhhhhcCCCHHHHHHHHHHHHHHHHH
Q 003799 158 PPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKAAKFAKATVK 237 (794)
Q Consensus 158 pPy~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G~D~hGlpie~~~~k~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 237 (794)
+|.|||.|||||+++.++.++++| ++++.|+.-+|+...+.. .| ...+.+
T Consensus 7 aPsPtG~lHiG~~rtal~~~l~Ar-----~~~G~~ilRieDtD~~r~----------------------~~---~~~~~~ 56 (240)
T cd09287 7 APNPNGPLHLGHARAAILNGEYAK-----MYGGKFILRFDDTDPRTK----------------------RP---DPEAYD 56 (240)
T ss_pred CCCCCCCccHHHHHHHHHHHHHHH-----HcCCEEEEeeCcCCCCcc----------------------cc---hHHHHH
Confidence 799999999999999999999999 566677766665422110 01 122334
Q ss_pred HHHHHHHHcCCccCCCCccccCChHHHHHHHHHHHHHHHcCCeee
Q 003799 238 AQMASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYR 282 (794)
Q Consensus 238 ~~~~~~~~lGi~~dwd~~~~T~d~~~~~~v~~~f~~L~~kGlIy~ 282 (794)
.+.++++.||+ +||.+++.+ ++.+...+...+|.++|++|.
T Consensus 57 ~i~~dL~wLGl--~~d~~~~qS--~r~~~y~~~~~~Li~~G~aY~ 97 (240)
T cd09287 57 MIPEDLEWLGV--KWDEVVIAS--DRIELYYEYARKLIEMGGAYV 97 (240)
T ss_pred HHHHHHHHcCC--CCCCccchh--ccHHHHHHHHHHHHHcCCccc
Confidence 48999999999 999765543 667777888999999999996
No 80
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional
Probab=98.27 E-value=1.6e-06 Score=100.55 Aligned_cols=97 Identities=20% Similarity=0.318 Sum_probs=71.8
Q ss_pred cEEEEcCCCCCCCcccchHHHhHHHHHHHHHHHHhCCCeeEEeccccCCCchHHHHHHhhchhhhhcCCCHHHHHHHHHH
Q 003799 151 NFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKAAK 230 (794)
Q Consensus 151 ~f~i~~~pPy~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G~D~hGlpie~~~~k~~~~~~~~~~~~~~~~~~~~~ 230 (794)
+.++- =+|.|||.||||||++.++.+.++| +|...|+.-+|+.--.|+ ..
T Consensus 101 ~V~tR-FaPsPtG~LHIGharaalln~~~Ar-----~~~G~~iLRidDTDpk~~------------------R~------ 150 (567)
T PRK04156 101 KVVMR-FAPNPSGPLHLGHARAAILNDEYAK-----MYGGKFILRFEDTDPRTK------------------RP------ 150 (567)
T ss_pred eEEEE-eCCCCCCCccHHHHHHHHHHHHHHH-----HcCCEEEEeEccCCCCcc------------------cc------
Confidence 34433 5999999999999999999999998 345555555555421110 00
Q ss_pred HHHHHHHHHHHHHHHcCCccCCCCccccCChHHHHHHHHHHHHHHHcCCeee
Q 003799 231 FAKATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYR 282 (794)
Q Consensus 231 ~a~~~~~~~~~~~~~lGi~~dwd~~~~T~d~~~~~~v~~~f~~L~~kGlIy~ 282 (794)
..++.+.+.++++.||+ +||..++.+ +|.....+...+|.++|++|.
T Consensus 151 -~~e~~~~I~edL~wLGl--~wD~~~~qS--dr~~~y~~~a~~Li~~G~AY~ 197 (567)
T PRK04156 151 -DPEAYDMILEDLKWLGV--KWDEVVIQS--DRLEIYYEYARKLIEMGGAYV 197 (567)
T ss_pred -hHHHHHHHHHHHHHcCC--CCCCccCcc--cCHHHHHHHHHHHHHcCCCcc
Confidence 12344678999999999 999876654 677888899999999999995
No 81
>TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the eukaryotic cytosolic and archaeal forms of the enzyme. In some eukaryotes, the glutamyl-tRNA synthetase is part of a longer, multifunctional aminoacyl-tRNA ligase. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu).
Probab=98.17 E-value=3.8e-06 Score=97.31 Aligned_cols=94 Identities=19% Similarity=0.304 Sum_probs=70.5
Q ss_pred EEEcCCCCCCCcccchHHHhHHHHHHHHHHHHhCCCeeEEeccccCCCchHHHHHHhhchhhhhcCCCHHHHHHHHHHHH
Q 003799 153 VLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKAAKFA 232 (794)
Q Consensus 153 ~i~~~pPy~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G~D~hGlpie~~~~k~~~~~~~~~~~~~~~~~~~~~~a 232 (794)
+++==||.|||.||||||++.++.+.++| .|+..++.-+|+.- |..- .
T Consensus 94 vvtRFaPsPtG~LHiGharaalln~~~Ar-----~~~G~~iLRidDTD--------------------p~R~-------~ 141 (560)
T TIGR00463 94 VVMRFAPNPSGPLHIGHARAAILNQYFAK-----KYKGKLIIRFDDTD--------------------PRRV-------K 141 (560)
T ss_pred eEEEeCCCCCCCccHHHHHHHHHHHHHHH-----hcCCEEEEEeCcCC--------------------cccc-------c
Confidence 44555999999999999999999999986 23444444445432 1111 2
Q ss_pred HHHHHHHHHHHHHcCCccCCCCccccCChHHHHHHHHHHHHHHHcCCeee
Q 003799 233 KATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYR 282 (794)
Q Consensus 233 ~~~~~~~~~~~~~lGi~~dwd~~~~T~d~~~~~~v~~~f~~L~~kGlIy~ 282 (794)
.++.+.+.++++.||+ +||..++++ +|.....+...+|.++|++|.
T Consensus 142 ~e~~~~I~edL~wLGi--~~d~~~~qS--d~~~~y~~~a~~Li~~G~AY~ 187 (560)
T TIGR00463 142 PEAYDMILEDLDWLGV--KGDEVVYQS--DRIEEYYDYCRKLIEMGKAYV 187 (560)
T ss_pred HHHHHHHHHHHHHcCC--CCCcccccc--ccHHHHHHHHHHHHHcCCcee
Confidence 2356778999999999 899766554 677888999999999999996
No 82
>PLN03233 putative glutamate-tRNA ligase; Provisional
Probab=98.13 E-value=6e-06 Score=94.69 Aligned_cols=94 Identities=20% Similarity=0.239 Sum_probs=70.9
Q ss_pred EEEcCCCCCCCcccchHHHhHHHHHHHHHHHHhCCCeeEEeccccCCCchHHHHHHhhchhhhhcCCCHHHHHHHHHHHH
Q 003799 153 VLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKAAKFA 232 (794)
Q Consensus 153 ~i~~~pPy~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G~D~hGlpie~~~~k~~~~~~~~~~~~~~~~~~~~~~a 232 (794)
+++==||.|||.||||||++.++...+||- ..|.-++.+ |+ .+|+.- .
T Consensus 12 v~tRFAPsPtG~LHiGharaAlln~l~Ar~--~gG~~iLRi---ED--------------------TDp~R~-------~ 59 (523)
T PLN03233 12 IVTRFPPEPSGYLHIGHAKAALLNDYYARR--YKGRLILRF---DD--------------------TNPSKE-------K 59 (523)
T ss_pred EEEeeCCCCCCcccHHHHHHHHHHHHHHHH--hCCEEEEEE---CC--------------------CCCCcc-------c
Confidence 344459999999999999999999999874 356554443 32 222221 3
Q ss_pred HHHHHHHHHHHHHcCCccCCCCccccCChHHHHHHHHHHHHHHHcCCeee
Q 003799 233 KATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYR 282 (794)
Q Consensus 233 ~~~~~~~~~~~~~lGi~~dwd~~~~T~d~~~~~~v~~~f~~L~~kGlIy~ 282 (794)
.++.+.+.++++.||+ +||..+.+. +|-....+...+|.++|++|.
T Consensus 60 ~e~~~~I~~dL~WLGl--~wD~~~~qS--dr~~~y~~~a~~Li~~G~AY~ 105 (523)
T PLN03233 60 AEFEESIIEDLGKIEI--KPDSVSFTS--DYFEPIRCYAIILIEEGLAYM 105 (523)
T ss_pred hHHHHHHHHHHHHhCC--CCCCCcccc--ccHHHHHHHHHHHHHcCCeEe
Confidence 3467779999999999 999877664 566777889999999999996
No 83
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase. This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid.
Probab=98.10 E-value=7.3e-06 Score=87.31 Aligned_cols=89 Identities=16% Similarity=0.304 Sum_probs=66.7
Q ss_pred CCCCCCcccchHHHhHHHHHHHHHHHHhCCCeeEEeccccCCCchHHHHHHhhchhhhhcCCCHHHHHHHHHHHHHHHHH
Q 003799 158 PPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKAAKFAKATVK 237 (794)
Q Consensus 158 pPy~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G~D~hGlpie~~~~k~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 237 (794)
+|.|||.|||||+++.++...++| ...|.-++.+==+| +... ..++.+
T Consensus 6 APSPtG~lHiG~~rtAL~n~l~Ar--~~gG~~iLRiEDtD-----------------------~~R~-------~~~~~~ 53 (272)
T TIGR03838 6 APSPSGPLHFGSLVAALGSYLDAR--AHGGRWLVRIEDLD-----------------------PPRE-------VPGAAD 53 (272)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHH--HhCCEEEEEeCcCC-----------------------CCCC-------ChHHHH
Confidence 799999999999999999999988 44666665543222 1111 223466
Q ss_pred HHHHHHHHcCCccCCCC-ccccCChHHHHHHHHHHHHHHHcCCeee
Q 003799 238 AQMASFKRYGVWADWNN-PYLTLDPEYEAAQIEVFGQMSLQGYIYR 282 (794)
Q Consensus 238 ~~~~~~~~lGi~~dwd~-~~~T~d~~~~~~v~~~f~~L~~kGlIy~ 282 (794)
.+.++++.||+ +||. +|+.. ++.+.-.+...+|.++|++|.
T Consensus 54 ~I~~dL~wLGl--~wDe~~~~QS--~r~~~Y~~~~~~L~~~G~aY~ 95 (272)
T TIGR03838 54 DILRTLEAYGL--HWDGEVVYQS--QRHALYQAALDRLLAAGLAYP 95 (272)
T ss_pred HHHHHHHHcCC--CCCCCeeeee--CCHHHHHHHHHHHHHcCCEEe
Confidence 78999999999 9996 44443 556677888999999999994
No 84
>PTZ00402 glutamyl-tRNA synthetase; Provisional
Probab=98.09 E-value=7.4e-06 Score=94.99 Aligned_cols=93 Identities=26% Similarity=0.402 Sum_probs=69.7
Q ss_pred EEEcCCCCCCCcccchHHHhHHHHHHHHHHHHhCCCeeEEeccccCCCchHHHHHHhhchhhhhcCCCHHHHHHHHHHHH
Q 003799 153 VLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKAAKFA 232 (794)
Q Consensus 153 ~i~~~pPy~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G~D~hGlpie~~~~k~~~~~~~~~~~~~~~~~~~~~~a 232 (794)
+.+==||.|||.||||||++.++...++|- ..|.-++.+ |+ .+|..- .
T Consensus 53 v~tRFAPsPtGyLHIGharaAllN~l~Ar~--~gG~~iLRi---ED--------------------TDp~R~-------~ 100 (601)
T PTZ00402 53 VVTRFPPEASGFLHIGHAKAALINSMLADK--YKGKLVFRF---DD--------------------TNPSKE-------K 100 (601)
T ss_pred eEEeeCCCCCCcccHHHHHHHHHHHHHHHH--hCCEEEEEE---cC--------------------CCCccc-------C
Confidence 344459999999999999999999999874 355444432 22 223222 3
Q ss_pred HHHHHHHHHHHHHcCCccCCCC-ccccCChHHHHHHHHHHHHHHHcCCee
Q 003799 233 KATVKAQMASFKRYGVWADWNN-PYLTLDPEYEAAQIEVFGQMSLQGYIY 281 (794)
Q Consensus 233 ~~~~~~~~~~~~~lGi~~dwd~-~~~T~d~~~~~~v~~~f~~L~~kGlIy 281 (794)
.++.+.+.++++.||+ +||. ++++. +|-....+...+|.++|++|
T Consensus 101 ~e~~d~IleDL~WLGl--~wDe~~~~QS--dr~d~y~e~a~~Li~~G~AY 146 (601)
T PTZ00402 101 EHFEQAILDDLATLGV--SWDVGPTYSS--DYMDLMYEKAEELIKKGLAY 146 (601)
T ss_pred HHHHHHHHHHHHHCCC--CCCCceeecc--ccHHHHHHHHHHHHHcCCEE
Confidence 3467779999999999 9996 55554 56778889999999999999
No 85
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase. Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=98.08 E-value=1.1e-05 Score=83.80 Aligned_cols=90 Identities=23% Similarity=0.210 Sum_probs=66.8
Q ss_pred CCCCCCCcccchHHHhHHHHHHHHHHHHhCCCeeEEeccccCCCchHHHHHHhhchhhhhcCCCHHHHHHHHHHHHHHHH
Q 003799 157 GPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKAAKFAKATV 236 (794)
Q Consensus 157 ~pPy~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G~D~hGlpie~~~~k~~~~~~~~~~~~~~~~~~~~~~a~~~~ 236 (794)
=+|.|||.||+||+++.++.-..+|- ..|.-++.+ |+ .++..- ..++.
T Consensus 6 FAPsPtG~lHlG~~~~al~~~l~Ar~--~~G~~iLRi---eD--------------------tD~~R~-------~~~~~ 53 (238)
T cd00807 6 FPPEPNGYLHIGHAKAILLNFGYAKK--YGGRCNLRF---DD--------------------TNPEKE-------EEEYV 53 (238)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHHH--hCCEEEEEe---cC--------------------CCCccc-------chHHH
Confidence 38999999999999999999888765 355444433 22 222221 23456
Q ss_pred HHHHHHHHHcCCccCCCCccccCChHHHHHHHHHHHHHHHcCCeee
Q 003799 237 KAQMASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYR 282 (794)
Q Consensus 237 ~~~~~~~~~lGi~~dwd~~~~T~d~~~~~~v~~~f~~L~~kGlIy~ 282 (794)
+.+.++++.||+ +||.+++. .++.+.-.+...+|.++|++|.
T Consensus 54 ~~I~~dL~wlGl--~wD~~~~Q--S~r~~~Y~~~~~~L~~~g~aY~ 95 (238)
T cd00807 54 DSIKEDVKWLGI--KPYKVTYA--SDYFDQLYEYAEQLIKKGKAYV 95 (238)
T ss_pred HHHHHHHHHcCC--CCCCceec--ccCHHHHHHHHHHHHHcCCeec
Confidence 778999999999 99976554 3566777888999999999998
No 86
>PLN02907 glutamate-tRNA ligase
Probab=98.05 E-value=1.4e-05 Score=95.99 Aligned_cols=94 Identities=23% Similarity=0.358 Sum_probs=71.2
Q ss_pred EEEcCCCCCCCcccchHHHhHHHHHHHHHHHHhCCCeeEEeccccCCCchHHHHHHhhchhhhhcCCCHHHHHHHHHHHH
Q 003799 153 VLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKAAKFA 232 (794)
Q Consensus 153 ~i~~~pPy~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G~D~hGlpie~~~~k~~~~~~~~~~~~~~~~~~~~~~a 232 (794)
+++==||.|||.||||||++.++...++| ...|.-++.. |++ +|..- .
T Consensus 214 v~tRFaPsPtG~LHiG~ar~al~n~~~Ar--~~~G~~iLR~---eDT--------------------dp~r~-------~ 261 (722)
T PLN02907 214 VCTRFPPEPSGYLHIGHAKAALLNQYFAR--RYKGKLIVRF---DDT--------------------NPSKE-------S 261 (722)
T ss_pred eEEeeCCCCCCcccHHHHHHHHHHHHHHH--HhCCEEEEEe---cCC--------------------CCCcC-------C
Confidence 44555999999999999999999999988 3456544443 332 22111 2
Q ss_pred HHHHHHHHHHHHHcCCccCCCCccccCChHHHHHHHHHHHHHHHcCCeee
Q 003799 233 KATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYR 282 (794)
Q Consensus 233 ~~~~~~~~~~~~~lGi~~dwd~~~~T~d~~~~~~v~~~f~~L~~kGlIy~ 282 (794)
.++.+.+.++++.||+ +||..+.+. +|-....+...+|.++|++|.
T Consensus 262 ~e~~~~I~~dl~wLG~--~~d~~~~qS--~r~~~y~~~a~~Li~~G~aY~ 307 (722)
T PLN02907 262 DEFVENILKDIETLGI--KYDAVTYTS--DYFPQLMEMAEKLIKEGKAYV 307 (722)
T ss_pred hHHHHHHHHHHHHcCC--CCCCccccc--ccHHHHHHHHHHHHHcCCeee
Confidence 3457779999999999 999887664 566777889999999999996
No 87
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A ....
Probab=98.03 E-value=1e-05 Score=88.39 Aligned_cols=89 Identities=21% Similarity=0.388 Sum_probs=60.3
Q ss_pred CCCCCCcccchHHHhHHHHHHHHHHHHhCCCeeEEeccccCCCchHHHHHHhhchhhhhcCCCHHHHHHHHHHHHHHHHH
Q 003799 158 PPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKAAKFAKATVK 237 (794)
Q Consensus 158 pPy~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G~D~hGlpie~~~~k~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 237 (794)
+|.|||.|||||+++.++.-.++| ...|.-++.+==+| +... ..++.+
T Consensus 7 APsPtG~lHiG~~r~al~n~~~Ar--~~~G~~iLRieDtD-----------------------~~R~-------~~~~~~ 54 (314)
T PF00749_consen 7 APSPTGYLHIGHARTALLNYLFAR--KYGGKFILRIEDTD-----------------------PERC-------RPEFYD 54 (314)
T ss_dssp ---SSSS-BHHHHHHHHHHHHHHH--HTTSEEEEEEETSS-----------------------TTTC-------HHHHHH
T ss_pred CCCCCCCcccchhHHHHHHHHHHh--ccCceEEEeccccc-----------------------cccc-------hhhHHH
Confidence 799999999999999999988887 55666555543222 1111 223466
Q ss_pred HHHHHHHHcCCccCCC-CccccCChHHHHHHHHHHHHHHHcCCeee
Q 003799 238 AQMASFKRYGVWADWN-NPYLTLDPEYEAAQIEVFGQMSLQGYIYR 282 (794)
Q Consensus 238 ~~~~~~~~lGi~~dwd-~~~~T~d~~~~~~v~~~f~~L~~kGlIy~ 282 (794)
.+.++|+.||+ +|| .+|... .+-+.-.+...+|.++|++|.
T Consensus 55 ~i~~~L~wlGl--~~D~~~~~QS--~r~~~Y~~~~~~L~~~g~aY~ 96 (314)
T PF00749_consen 55 AILEDLRWLGL--EWDYGPYYQS--DRLEIYQEAAEKLIDKGKAYP 96 (314)
T ss_dssp HHHHHHHHHT-----STCEEEGG--GGHHHHHHHHHHHHHTTSEEE
T ss_pred HHHhheeEEEE--ecCCeEEeHH--HHHHHHHHHHHHHhhcCCCcc
Confidence 68999999999 998 666643 566677888899999999996
No 88
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=98.00 E-value=1.4e-05 Score=91.09 Aligned_cols=94 Identities=23% Similarity=0.354 Sum_probs=69.7
Q ss_pred EEEcCCCCCCCcccchHHHhHHHHHHHHHHHHhCCCeeEEeccccCCCchHHHHHHhhchhhhhcCCCHHHHHHHHHHHH
Q 003799 153 VLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKAAKFA 232 (794)
Q Consensus 153 ~i~~~pPy~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G~D~hGlpie~~~~k~~~~~~~~~~~~~~~~~~~~~~a 232 (794)
+.+==+|.|||.||||||++.++...+||. ..|.-++.+==+| |+.- .
T Consensus 10 v~tRFAPsPtG~LHiG~artAl~N~~~Ar~--~~G~fiLRiEDTD-----------------------~~R~-------~ 57 (472)
T COG0008 10 VRTRFAPSPTGYLHIGHARTALLNYLYARK--YGGKFILRIEDTD-----------------------PERE-------T 57 (472)
T ss_pred eEEEECcCCCCccchHHHHHHHHHHHHHHH--hCCEEEEEecCCC-----------------------CCCC-------C
Confidence 445559999999999999999999888775 3565555542222 2111 2
Q ss_pred HHHHHHHHHHHHHcCCccCCCC-ccccCChHHHHHHHHHHHHHHHcCCeee
Q 003799 233 KATVKAQMASFKRYGVWADWNN-PYLTLDPEYEAAQIEVFGQMSLQGYIYR 282 (794)
Q Consensus 233 ~~~~~~~~~~~~~lGi~~dwd~-~~~T~d~~~~~~v~~~f~~L~~kGlIy~ 282 (794)
.++.+.+.++++.||+ +||. +|+.+ ++-..-.+...+|.++|+.|.
T Consensus 58 ~e~~~~I~~~L~WLGl--~wde~~~~QS--~r~~~Y~~~~~~Li~~G~AY~ 104 (472)
T COG0008 58 PEAEDAILEDLEWLGL--DWDEGPYYQS--ERFDIYYEYAEKLIEKGKAYV 104 (472)
T ss_pred HHHHHHHHHHHHhcCC--CCCCceeehh--hhHHHHHHHHHHHHHCCCeEE
Confidence 3356678999999999 9999 56654 566777888899999999995
No 89
>PTZ00437 glutaminyl-tRNA synthetase; Provisional
Probab=97.99 E-value=1.8e-05 Score=91.03 Aligned_cols=92 Identities=24% Similarity=0.161 Sum_probs=67.2
Q ss_pred EcCCCCCCCcccchHHHhHHHHHHHHHHHHhCCCeeEEeccccCCCchHHHHHHhhchhhhhcCCCHHHHHHHHHHHHHH
Q 003799 155 HDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKAAKFAKA 234 (794)
Q Consensus 155 ~~~pPy~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G~D~hGlpie~~~~k~~~~~~~~~~~~~~~~~~~~~~a~~ 234 (794)
+==||.|||.||||||++.++...+||. ..|.-++.+ |+ .+|... ..+
T Consensus 54 tRFaPsPtG~LHiGharaalln~~~Ar~--~gG~~iLRi---ED--------------------TDp~r~-------~~e 101 (574)
T PTZ00437 54 FRFPPEPNGFLHIGHAKSMNLNFGSARA--HGGKCYLRY---DD--------------------TNPETE-------EQV 101 (574)
T ss_pred EEeCCCCCCcccHHHHHHHHHHHHHHHH--hCCEEEEEE---CC--------------------CCcccc-------ChH
Confidence 4459999999999999999999998875 345444433 32 222221 344
Q ss_pred HHHHHHHHHHHcCCccCCCCccccCChHHHHHHHHHHHHHHHcCCeee
Q 003799 235 TVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYR 282 (794)
Q Consensus 235 ~~~~~~~~~~~lGi~~dwd~~~~T~d~~~~~~v~~~f~~L~~kGlIy~ 282 (794)
+.+.+.++++.||+ +||..+.+ ..|.+...+...+|.++|++|.
T Consensus 102 ~~~~I~~dL~wLGi--~~D~~~~q--S~y~~~~ye~A~~Li~~G~AY~ 145 (574)
T PTZ00437 102 YIDAIMEMVKWMGW--KPDWVTFS--SDYFDQLHEFAVQLIKDGKAYV 145 (574)
T ss_pred HHHHHHHHHHHcCC--CCCCCCcC--chhHHHHHHHHHHHHHcCCEEE
Confidence 67778999999999 99977654 3455555677789999999996
No 90
>TIGR00440 glnS glutaminyl-tRNA synthetase. This protein is a relatively rare aminoacyl-tRNA synthetase, found in the cytosolic compartment of eukaryotes, in E. coli and a number of other Gram-negative Bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive Bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln. This enzyme is a class I tRNA synthetase (hit by the pfam model tRNA-synt_1c) and is quite closely related to glutamyl-tRNA synthetases.
Probab=97.95 E-value=2.2e-05 Score=90.19 Aligned_cols=91 Identities=22% Similarity=0.277 Sum_probs=64.9
Q ss_pred CCCCCCCcccchHHHhHHHHHHHHHHHHhCCCeeEEeccccCCCchHHHHHHhhchhhhhcCCCHHHHHHHHHHHHHHHH
Q 003799 157 GPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKAAKFAKATV 236 (794)
Q Consensus 157 ~pPy~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G~D~hGlpie~~~~k~~~~~~~~~~~~~~~~~~~~~~a~~~~ 236 (794)
=||.|||.||||||++.++...+||- ..|.-++.+ |++ +|..- ..++.
T Consensus 5 FaPsPtG~LHiG~ar~al~n~~~A~~--~~G~~iLRi---eDT--------------------d~~r~-------~~e~~ 52 (522)
T TIGR00440 5 FPPEPNGYLHIGHAKSICLNFGYAKY--YNGTCNLRF---DDT--------------------NPVKE-------DPEYV 52 (522)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHHH--hCCEEEEEE---cCC--------------------CcccC-------ChHHH
Confidence 38999999999999999999999873 355544443 332 22111 23457
Q ss_pred HHHHHHHHHcCCccCCC-CccccCChHHHHHHHHHHHHHHHcCCeeec
Q 003799 237 KAQMASFKRYGVWADWN-NPYLTLDPEYEAAQIEVFGQMSLQGYIYRG 283 (794)
Q Consensus 237 ~~~~~~~~~lGi~~dwd-~~~~T~d~~~~~~v~~~f~~L~~kGlIy~~ 283 (794)
+.+.++++.||+ +|| .++.+. +|-....+...+|.++|++|..
T Consensus 53 ~~I~~dL~wLG~--~~d~~~~~qS--~~~~~~~~~a~~Li~~G~AY~c 96 (522)
T TIGR00440 53 ESIKRDVEWLGF--KWEGKIRYSS--DYFDELYRYAEELIKKGLAYVD 96 (522)
T ss_pred HHHHHHHHHcCC--CCCCCceEcc--ccHHHHHHHHHHHHHcCCEEee
Confidence 779999999999 995 445543 3445555677899999999963
No 91
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=97.94 E-value=2.6e-05 Score=88.49 Aligned_cols=90 Identities=19% Similarity=0.265 Sum_probs=65.0
Q ss_pred CCCCCCCcccchHHHhHHHHHHHHHHHHhCCCeeEEeccccCCCchHHHHHHhhchhhhhcCCCHHHHHHHHHHHHHHHH
Q 003799 157 GPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKAAKFAKATV 236 (794)
Q Consensus 157 ~pPy~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G~D~hGlpie~~~~k~~~~~~~~~~~~~~~~~~~~~~a~~~~ 236 (794)
=+|.|||.||||||++.++.-.++|- .+|.-++.+ |++ ++... ...+.
T Consensus 7 FAPSPTG~lHiG~artAL~n~l~Ar~--~gG~fiLRI---EDT--------------------D~~Rs-------~~~~~ 54 (445)
T PRK12558 7 FAPSPTGYLHVGNARTALLNWLYARK--HGGKFILRI---DDT--------------------DLERS-------KQEYA 54 (445)
T ss_pred eCCCCCCcccHHHHHHHHHHHHHHHH--hCCEEEEEe---ccC--------------------Ccccc-------hHHHH
Confidence 37999999999999999987776653 234444433 332 11111 34457
Q ss_pred HHHHHHHHHcCCccCCCCccccCChHHHHHHHHHHHHHHHcCCeee
Q 003799 237 KAQMASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYR 282 (794)
Q Consensus 237 ~~~~~~~~~lGi~~dwd~~~~T~d~~~~~~v~~~f~~L~~kGlIy~ 282 (794)
+.++++|++||+ +||.+|...+ ......++..+|.++|++|+
T Consensus 55 ~~I~e~L~wLGI--~~De~y~QSe--r~~~y~~~~e~L~e~G~AY~ 96 (445)
T PRK12558 55 DAIAEDLKWLGI--NWDRTFRQSD--RFDRYDEAAEKLKAAGRLYP 96 (445)
T ss_pred HHHHHHHHHcCC--CCCccccHHH--HHHHHHHHHHHHHHCCCEEE
Confidence 779999999999 9998766543 33578999999999999985
No 92
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed
Probab=97.88 E-value=3e-05 Score=83.65 Aligned_cols=90 Identities=17% Similarity=0.295 Sum_probs=64.8
Q ss_pred CCCCCCCcccchHHHhHHHHHHHHHHHHhCCCeeEEeccccCCCchHHHHHHhhchhhhhcCCCHHHHHHHHHHHHHHHH
Q 003799 157 GPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKAAKFAKATV 236 (794)
Q Consensus 157 ~pPy~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G~D~hGlpie~~~~k~~~~~~~~~~~~~~~~~~~~~~a~~~~ 236 (794)
=+|.|||.||+||+++.++.-.++|-. .|.-++.+ |+ .++..- ..++.
T Consensus 10 FAPSPTG~LHlG~~rtAL~n~l~Ar~~--~G~~iLRi---ED--------------------tD~~R~-------~~~~~ 57 (299)
T PRK05710 10 FAPSPSGPLHFGSLVAALGSWLDARAH--GGRWLLRI---ED--------------------IDPPRE-------VPGAA 57 (299)
T ss_pred eCcCCCCcccHHHHHHHHHHHHHHHHc--CCEEEEEE---Cc--------------------CCCCcc-------chHHH
Confidence 389999999999999999988877643 35444333 22 111111 23346
Q ss_pred HHHHHHHHHcCCccCCCC-ccccCChHHHHHHHHHHHHHHHcCCeee
Q 003799 237 KAQMASFKRYGVWADWNN-PYLTLDPEYEAAQIEVFGQMSLQGYIYR 282 (794)
Q Consensus 237 ~~~~~~~~~lGi~~dwd~-~~~T~d~~~~~~v~~~f~~L~~kGlIy~ 282 (794)
+.+.++++.||+ +||. +|+.+ ++.+.-.++..+|.++|++|.
T Consensus 58 ~~I~~dL~wlGl--~wDe~~~~QS--~r~~~Y~~~~~~L~~~G~aY~ 100 (299)
T PRK05710 58 DAILADLEWLGL--HWDGPVLYQS--QRHDAYRAALDRLRAQGLVYP 100 (299)
T ss_pred HHHHHHHHHCCC--CCCCCceEee--ccHHHHHHHHHHHHHCCCcee
Confidence 678999999999 9995 66544 456777888999999999994
No 93
>PRK05347 glutaminyl-tRNA synthetase; Provisional
Probab=97.88 E-value=3.2e-05 Score=89.18 Aligned_cols=94 Identities=23% Similarity=0.259 Sum_probs=65.6
Q ss_pred EEEcCCCCCCCcccchHHHhHHHHHHHHHHHHhCCCeeEEeccccCCCchHHHHHHhhchhhhhcCCCHHHHHHHHHHHH
Q 003799 153 VLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKAAKFA 232 (794)
Q Consensus 153 ~i~~~pPy~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G~D~hGlpie~~~~k~~~~~~~~~~~~~~~~~~~~~~a 232 (794)
+++==||.|||.||||||++.++...+||- ..|.-++.+ |++ +|..- .
T Consensus 30 v~tRFaPsPtG~LHiG~ar~al~n~~~Ar~--~~G~~iLRi---eDT--------------------d~~r~-------~ 77 (554)
T PRK05347 30 VHTRFPPEPNGYLHIGHAKSICLNFGLAQD--YGGKCNLRF---DDT--------------------NPEKE-------D 77 (554)
T ss_pred eEEEeCCCCCCcccHHHHHHHHHHHHHHHH--hCCEEEEEE---CCC--------------------CCCcC-------C
Confidence 344459999999999999999999998874 345444433 332 22111 2
Q ss_pred HHHHHHHHHHHHHcCCccCCC-CccccCChHHHHHHHHHHHHHHHcCCeee
Q 003799 233 KATVKAQMASFKRYGVWADWN-NPYLTLDPEYEAAQIEVFGQMSLQGYIYR 282 (794)
Q Consensus 233 ~~~~~~~~~~~~~lGi~~dwd-~~~~T~d~~~~~~v~~~f~~L~~kGlIy~ 282 (794)
.++.+.+.++++.||+ +|| .++.+. +|-....+...+|.++|++|.
T Consensus 78 ~e~~~~I~~dL~wLGi--~~d~~~~~qS--~r~~~~y~~a~~Li~~G~AY~ 124 (554)
T PRK05347 78 QEYVDSIKEDVRWLGF--DWSGELRYAS--DYFDQLYEYAVELIKKGKAYV 124 (554)
T ss_pred hHHHHHHHHHHHHcCC--CCCCCceeee--cCHHHHHHHHHHHHHcCCEee
Confidence 3456778999999999 994 556554 333444455679999999996
No 94
>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional
Probab=97.87 E-value=3.2e-05 Score=87.32 Aligned_cols=89 Identities=12% Similarity=0.238 Sum_probs=66.1
Q ss_pred CCCCCCcccchHHHhHHHHHHHHHHHHhCCCeeEEeccccCCCchHHHHHHhhchhhhhcCCCHHHHHHHHHHHHHHHHH
Q 003799 158 PPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKAAKFAKATVK 237 (794)
Q Consensus 158 pPy~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G~D~hGlpie~~~~k~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 237 (794)
.|.|||.||||||++.++.-.++|- ..|.-++.+==+| +... ..++.+
T Consensus 5 APSPTG~LHiG~artAL~n~l~Ar~--~gG~fiLRiEDTD-----------------------~~R~-------~~e~~~ 52 (433)
T PRK12410 5 APSPTGDMHIGNLRAAIFNYIVAKQ--QNEDFLIRIEDTD-----------------------KERN-------IEGKDK 52 (433)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHH--cCCEEEEEeCcCC-----------------------CCcC-------ChHHHH
Confidence 6999999999999999998887764 4555555543222 1111 234567
Q ss_pred HHHHHHHHcCCccCCCCccccCChHHHHHHHHHHHHHHHcCCeee
Q 003799 238 AQMASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYR 282 (794)
Q Consensus 238 ~~~~~~~~lGi~~dwd~~~~T~d~~~~~~v~~~f~~L~~kGlIy~ 282 (794)
.+.++++.||+ +||.+|+.+ ++-+.-.+...+|.++|.+|.
T Consensus 53 ~I~~~L~WlGl--~wDe~y~QS--eR~~~Y~~~a~~Li~~G~AY~ 93 (433)
T PRK12410 53 EILEILNLFGI--SWDKLVYQS--ENLKFHRQMAEKLLSEKKAFA 93 (433)
T ss_pred HHHHHHHHcCC--CCCCCeehh--ccHHHHHHHHHHHHHcCCeee
Confidence 78999999999 999888765 344666778999999999994
No 95
>PRK14895 gltX glutamyl-tRNA synthetase; Provisional
Probab=97.85 E-value=4e-05 Score=87.95 Aligned_cols=90 Identities=21% Similarity=0.287 Sum_probs=67.6
Q ss_pred CCCCCCCcccchHHHhHHHHHHHHHHHHhCCCeeEEeccccCCCchHHHHHHhhchhhhhcCCCHHHHHHHHHHHHHHHH
Q 003799 157 GPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKAAKFAKATV 236 (794)
Q Consensus 157 ~pPy~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G~D~hGlpie~~~~k~~~~~~~~~~~~~~~~~~~~~~a~~~~ 236 (794)
=.|.|||.||||||++.++.-.++| ...|.-++.+==+| +... ..++.
T Consensus 9 FAPSPTG~lHiG~artAL~n~l~Ar--~~gG~fiLRIEDTD-----------------------~~R~-------~~~~~ 56 (513)
T PRK14895 9 FAPSPTGFLHIGSARTALFNYLFAR--HHNGKFLLRIEDTD-----------------------KERS-------TKEAV 56 (513)
T ss_pred eCCCCCCCccHHHHHHHHHHHHHHH--HcCCEEEEEECCCC-----------------------cccc-------ChHHH
Confidence 4799999999999999999998888 45666666543222 1111 23456
Q ss_pred HHHHHHHHHcCCccCCC-CccccCChHHHHHHHHHHHHHHHcCCeee
Q 003799 237 KAQMASFKRYGVWADWN-NPYLTLDPEYEAAQIEVFGQMSLQGYIYR 282 (794)
Q Consensus 237 ~~~~~~~~~lGi~~dwd-~~~~T~d~~~~~~v~~~f~~L~~kGlIy~ 282 (794)
+.+.++++.||+ +|| .+|+.++ +...-.+...+|.++|.+|+
T Consensus 57 ~~i~~~L~WLGl--~wDe~py~QSe--R~~~Y~~~a~~Li~~G~AY~ 99 (513)
T PRK14895 57 EAIFSGLKWLGL--DWNGEVIFQSK--RNNLYKEAALKLLQNGKAYY 99 (513)
T ss_pred HHHHHHHHHcCC--CCCCCceeEeC--cHHHHHHHHHHHHHcCCeEE
Confidence 778999999999 999 5676553 45677788999999999995
No 96
>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the bacterial and mitochondrial forms of the enzyme. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). This model is highly specific. Proteins with positive scores below the trusted cutoff may be fragments rather than full-length sequences.
Probab=97.84 E-value=3.6e-05 Score=88.55 Aligned_cols=89 Identities=17% Similarity=0.303 Sum_probs=65.0
Q ss_pred CCCCCCcccchHHHhHHHHHHHHHHHHhCCCeeEEeccccCCCchHHHHHHhhchhhhhcCCCHHHHHHHHHHHHHHHHH
Q 003799 158 PPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKAAKFAKATVK 237 (794)
Q Consensus 158 pPy~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G~D~hGlpie~~~~k~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 237 (794)
+|-|||.|||||+++.++.-.++| ...|.-++.+= ++ ++... ..++.+
T Consensus 7 APsPtG~lHiG~~rtal~n~l~Ar--~~~G~~iLRie---Dt--------------------D~~R~-------~~~~~~ 54 (470)
T TIGR00464 7 APSPTGYLHIGGARTALFNYLFAK--HTGGEFILRIE---DT--------------------DLERN-------IEEAEE 54 (470)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHH--HcCCEEEEEeC---cC--------------------CCccC-------ChHHHH
Confidence 799999999999999999988887 34454444432 21 22111 234567
Q ss_pred HHHHHHHHcCCccCCC-CccccCChHHHHHHHHHHHHHHHcCCeee
Q 003799 238 AQMASFKRYGVWADWN-NPYLTLDPEYEAAQIEVFGQMSLQGYIYR 282 (794)
Q Consensus 238 ~~~~~~~~lGi~~dwd-~~~~T~d~~~~~~v~~~f~~L~~kGlIy~ 282 (794)
.+.++++.||+ +|| .+|+.++ +.+.-.++..+|.++|++|.
T Consensus 55 ~i~~~L~wlGl--~~de~~~~QS~--r~~~y~~~~~~L~~~g~aY~ 96 (470)
T TIGR00464 55 AILEGLKWLGI--SWDEGPYYQSQ--RLDIYKKYAKELLEEGLAYR 96 (470)
T ss_pred HHHHHHHHCCC--CCCCCeeehhC--CHHHHHHHHHHHHHcCCEEe
Confidence 78999999999 999 6776653 34555678899999999994
No 97
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase. Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind
Probab=97.84 E-value=4.7e-05 Score=79.09 Aligned_cols=86 Identities=20% Similarity=0.309 Sum_probs=62.5
Q ss_pred CCCCCCCcccchHHHhHHHHHHHHHHHHhCCCeeEEeccccCCCchHHHHHHhhchhhhhcCCCHHHHHHHHHHHHHHHH
Q 003799 157 GPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKAAKFAKATV 236 (794)
Q Consensus 157 ~pPy~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G~D~hGlpie~~~~k~~~~~~~~~~~~~~~~~~~~~~a~~~~ 236 (794)
=+|.|||.||+||+++.++.-.++|-+ .|.-++.+= +. ++..- ..++.
T Consensus 6 FAPsPtG~lHlG~~r~al~n~l~Ar~~--~G~~iLRie---Dt--------------------D~~R~-------~~~~~ 53 (230)
T cd00418 6 FAPSPTGYLHIGHARTALFNFAFARKY--GGKFILRIE---DT--------------------DPERS-------RPEYV 53 (230)
T ss_pred eCCCCCCcccHHHHHHHHHHHHHHHHc--CCeEEEEeC---cC--------------------CCCCC-------ChHHH
Confidence 379999999999999999998887753 555554432 21 11111 22356
Q ss_pred HHHHHHHHHcCCccCCCC-ccccCChHHHHHHHHHHHHHHHcC
Q 003799 237 KAQMASFKRYGVWADWNN-PYLTLDPEYEAAQIEVFGQMSLQG 278 (794)
Q Consensus 237 ~~~~~~~~~lGi~~dwd~-~~~T~d~~~~~~v~~~f~~L~~kG 278 (794)
+.+.++++.||+ +||. +|+.. ++.+.-.+...+|.++|
T Consensus 54 ~~I~~dL~wlGl--~wd~~~~~QS--~r~~~y~~~~~~L~~~g 92 (230)
T cd00418 54 ESILEDLKWLGL--DWDEGPYRQS--DRFDLYRAYAEELIKKG 92 (230)
T ss_pred HHHHHHHHHcCC--CCCCCeeehh--cCHHHHHHHHHHHHHcC
Confidence 778999999999 9998 66543 55666778889999999
No 98
>PLN02859 glutamine-tRNA ligase
Probab=97.81 E-value=5.7e-05 Score=89.90 Aligned_cols=94 Identities=20% Similarity=0.180 Sum_probs=65.9
Q ss_pred EEEcCCCCCCCcccchHHHhHHHHHHHHHHHHhCCCeeEEeccccCCCchHHHHHHhhchhhhhcCCCHHHHHHHHHHHH
Q 003799 153 VLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKAAKFA 232 (794)
Q Consensus 153 ~i~~~pPy~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G~D~hGlpie~~~~k~~~~~~~~~~~~~~~~~~~~~~a 232 (794)
+.+-=||.|||.||||||++.++...++|.. .|.-.+.. |++ +|..- .
T Consensus 265 V~tRFaPsPtG~LHiGharaallN~~~Ar~~--~G~~~LRi---eDT--------------------dp~r~-------~ 312 (788)
T PLN02859 265 VYTRFPPEPNGYLHIGHAKAMFVDFGLAKER--GGCCYLRF---DDT--------------------NPEAE-------K 312 (788)
T ss_pred eEEEeCCCCCCcccHHHHHHHHHHHHHHHHh--CCEEEEEe---cCC--------------------CCCcc-------c
Confidence 3344599999999999999999999888863 45444332 332 22211 3
Q ss_pred HHHHHHHHHHHHHcCCccCCCCccccCChHHHHHHHHHHHHHHHcCCeee
Q 003799 233 KATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYR 282 (794)
Q Consensus 233 ~~~~~~~~~~~~~lGi~~dwd~~~~T~d~~~~~~v~~~f~~L~~kGlIy~ 282 (794)
.++.+.+.++++.||+ +|+..+.+.+. +.. ..+...+|.++|++|.
T Consensus 313 ~e~~~~I~edL~WLG~--~~d~~~~qSd~-f~~-~Y~~A~~Li~~G~AY~ 358 (788)
T PLN02859 313 KEYIDHIEEIVEWMGW--EPFKITYTSDY-FQE-LYELAVELIRRGHAYV 358 (788)
T ss_pred hHHHHHHHHHHHHcCC--CCCCcccccHh-HHH-HHHHHHHHHHcCCeEe
Confidence 3467779999999998 89987776532 222 2334567999999996
No 99
>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional
Probab=97.78 E-value=4.5e-05 Score=91.54 Aligned_cols=95 Identities=26% Similarity=0.319 Sum_probs=69.5
Q ss_pred EEEcCCCCCCCcccchHHHhHHHHHHHHHHHHhCCCeeEEeccccCCCchHHHHHHhhchhhhhcCCCHHHHHHHHHHHH
Q 003799 153 VLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKAAKFA 232 (794)
Q Consensus 153 ~i~~~pPy~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G~D~hGlpie~~~~k~~~~~~~~~~~~~~~~~~~~~~a 232 (794)
+++==||.|||.||||||++.++...++|- ..|.-++. +|+. +|..- .
T Consensus 32 v~tRFaPsPtG~lHiGhar~alln~~~A~~--~~G~~~LR---~eDT--------------------d~~r~-------~ 79 (771)
T PRK14703 32 VVTRFPPEPNGYLHIGHAKSILLNFGIARD--YGGRCHLR---MDDT--------------------NPETE-------D 79 (771)
T ss_pred eEEEeCcCCCCcccHHHHHHHHHHHHHHHH--hCCEEEEE---eCCC--------------------CCCcC-------C
Confidence 455569999999999999999999888863 34544433 3332 22211 2
Q ss_pred HHHHHHHHHHHHHcCCccCCCC-ccccCChHHHHHHHHHHHHHHHcCCeeec
Q 003799 233 KATVKAQMASFKRYGVWADWNN-PYLTLDPEYEAAQIEVFGQMSLQGYIYRG 283 (794)
Q Consensus 233 ~~~~~~~~~~~~~lGi~~dwd~-~~~T~d~~~~~~v~~~f~~L~~kGlIy~~ 283 (794)
.++++.+.++++.||+ +||. +|++. +|-....+...+|.++|++|..
T Consensus 80 ~e~~~~I~~dl~wLG~--~wd~~~~~qS--~~~~~y~~~a~~Li~~G~aY~c 127 (771)
T PRK14703 80 TEYVEAIKDDVRWLGF--DWGEHLYYAS--DYFERMYAYAEQLIKMGLAYVD 127 (771)
T ss_pred hHHHHHHHHHHHHcCC--CCCCCceEee--cCHHHHHHHHHHHHHcCCcccC
Confidence 3457779999999999 9985 35544 5677778888999999999973
No 100
>PLN02627 glutamyl-tRNA synthetase
Probab=97.68 E-value=9.5e-05 Score=85.11 Aligned_cols=93 Identities=24% Similarity=0.336 Sum_probs=67.2
Q ss_pred EEcCCCCCCCcccchHHHhHHHHHHHHHHHHhCCCeeEEeccccCCCchHHHHHHhhchhhhhcCCCHHHHHHHHHHHHH
Q 003799 154 LHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKAAKFAK 233 (794)
Q Consensus 154 i~~~pPy~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G~D~hGlpie~~~~k~~~~~~~~~~~~~~~~~~~~~~a~ 233 (794)
.+==+|-|||.||||||++.++.-.++| ...|.-++.+==+| +... ..
T Consensus 47 r~RFAPSPTG~LHiG~aRtAL~n~l~Ar--~~gG~fiLRIEDTD-----------------------~~R~-------~~ 94 (535)
T PLN02627 47 RVRFAPSPTGNLHVGGARTALFNYLFAR--SKGGKFVLRIEDTD-----------------------LARS-------TK 94 (535)
T ss_pred EEEeCCCCCCCccHHHHHHHHHHHHHHH--HhCCEEEEEeCcCC-----------------------CCCC-------Ch
Confidence 3334789999999999999999998887 45566555543222 1111 33
Q ss_pred HHHHHHHHHHHHcCCccCCCC---------ccccCChHHHHHHHHHHHHHHHcCCeee
Q 003799 234 ATVKAQMASFKRYGVWADWNN---------PYLTLDPEYEAAQIEVFGQMSLQGYIYR 282 (794)
Q Consensus 234 ~~~~~~~~~~~~lGi~~dwd~---------~~~T~d~~~~~~v~~~f~~L~~kGlIy~ 282 (794)
++.+.+.++++.||+ +||. +|+-+ ++-+.-.++..+|.++|++|+
T Consensus 95 e~~~~I~~~L~WLGl--~wDegp~~gg~~gpy~QS--eR~~~Y~~~a~~Li~~G~AY~ 148 (535)
T PLN02627 95 ESEEAVLRDLKWLGL--DWDEGPDVGGEYGPYRQS--ERNAIYKQYAEKLLESGHVYP 148 (535)
T ss_pred HHHHHHHHHHHHcCC--CCCcCcccCCCCCCeeee--ccHHHHHHHHHHHHHcCCeee
Confidence 456778999999999 9995 34433 345666788899999999995
No 101
>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed
Probab=97.52 E-value=0.0002 Score=82.64 Aligned_cols=91 Identities=21% Similarity=0.271 Sum_probs=66.0
Q ss_pred cCCCCCCCcccchHHHhHHHHHHHHHHHHhCCCeeEEeccccCCCchHHHHHHhhchhhhhcCCCHHHHHHHHHHHHHHH
Q 003799 156 DGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKAAKFAKAT 235 (794)
Q Consensus 156 ~~pPy~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G~D~hGlpie~~~~k~~~~~~~~~~~~~~~~~~~~~~a~~~ 235 (794)
==+|-|||.|||||+++.++.-.++|- ..|.-++.+==+| +... ..++
T Consensus 8 RfAPSPtG~lHiG~~rtal~n~l~Ar~--~~G~fiLRieDtD-----------------------~~R~-------~~~~ 55 (476)
T PRK01406 8 RFAPSPTGYLHIGGARTALFNWLFARH--HGGKFILRIEDTD-----------------------QERS-------TEEA 55 (476)
T ss_pred EeCCCCCCcccHHHHHHHHHHHHHHHH--cCCEEEEEeCcCC-----------------------CCCC-------ChHH
Confidence 348999999999999999998888764 3554444432221 1111 3445
Q ss_pred HHHHHHHHHHcCCccCCCCc--------cccCChHHHHHHHHHHHHHHHcCCeee
Q 003799 236 VKAQMASFKRYGVWADWNNP--------YLTLDPEYEAAQIEVFGQMSLQGYIYR 282 (794)
Q Consensus 236 ~~~~~~~~~~lGi~~dwd~~--------~~T~d~~~~~~v~~~f~~L~~kGlIy~ 282 (794)
.+.+.++++.||+ +||.. |+.+ ++-+.-.+...+|.++|++|+
T Consensus 56 ~~~i~~~L~wlGl--~~De~p~~~~~gpy~QS--~r~~~y~~~~~~L~~~g~aY~ 106 (476)
T PRK01406 56 EEAILEGLKWLGL--DWDEGPDGGPYGPYRQS--ERLDIYKEYAEQLLEEGKAYY 106 (476)
T ss_pred HHHHHHHHHHCCC--CCCCCCccCCCCceehh--cCHHHHHHHHHHHHHcCCeee
Confidence 6778999999999 99954 5544 445677888899999999995
No 102
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase. Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=97.49 E-value=0.00028 Score=73.87 Aligned_cols=86 Identities=19% Similarity=0.268 Sum_probs=59.4
Q ss_pred CCCCCCCcccchHHHhHHHHHHHHHHHHhCCCeeEEeccccCCCchHHHHHHhhchhhhhcCCCHHHHHHHHHHHHHHHH
Q 003799 157 GPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKAAKFAKATV 236 (794)
Q Consensus 157 ~pPy~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G~D~hGlpie~~~~k~~~~~~~~~~~~~~~~~~~~~~a~~~~ 236 (794)
=+|.|||.||+||+++.++.-..+|- ..|.-++. +|+.- +..- -.++.
T Consensus 6 fAPsPtG~LHlG~~~~al~n~l~ar~--~~G~~ilR---ieDtd--------------------~~r~-------~~~~~ 53 (239)
T cd00808 6 FAPSPTGFLHIGGARTALFNYLFARK--HGGKFILR---IEDTD--------------------QERS-------VPEAE 53 (239)
T ss_pred eCCCCCCcccHHHHHHHHHHHHHHHH--cCCeEEEE---ECcCC--------------------CCCC-------chHHH
Confidence 37999999999999999999888773 34533322 33311 1000 12345
Q ss_pred HHHHHHHHHcCCccCCCC---------ccccCChHHHHHHHHHHHHHHHcC
Q 003799 237 KAQMASFKRYGVWADWNN---------PYLTLDPEYEAAQIEVFGQMSLQG 278 (794)
Q Consensus 237 ~~~~~~~~~lGi~~dwd~---------~~~T~d~~~~~~v~~~f~~L~~kG 278 (794)
+.+.+++..||+ +||. +|... .+.....++..+|.++|
T Consensus 54 ~~i~~dL~wlGl--~~d~~~~~~g~~~~~~QS--~r~~~y~~~~~~L~~~g 100 (239)
T cd00808 54 EAILEALKWLGL--DWDEGPDVGGPYGPYRQS--ERLEIYRKYAEKLLEKG 100 (239)
T ss_pred HHHHHHHHHcCC--CCCcCCccCCCCCCEeee--CCHHHHHHHHHHHHHcC
Confidence 668899999999 9998 66655 35566667788888888
No 103
>KOG4426 consensus Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=96.72 E-value=0.015 Score=63.92 Aligned_cols=144 Identities=15% Similarity=0.193 Sum_probs=93.2
Q ss_pred CCcEEEEcCCCCCCCcccchHHHhHHHHHHHHHHHHhCCCeeEEeccccCC----CchHHHHHHh---------------
Q 003799 149 GENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCH----GLPIELKVLQ--------------- 209 (794)
Q Consensus 149 ~~~f~i~~~pPy~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G~D~h----Glpie~~~~k--------------- 209 (794)
.++-++.-.-||.-..+|+||.++.|++|.++|.....|++|+.+--.-+. |+-|+.-.+|
T Consensus 187 ~KrvlVDFSSPNIAKeMHVGHLRSTIIGdsl~RllE~~~~dVlR~NHvGDWGTQFGMLIahL~dkFPd~l~vsp~IgDLQ 266 (656)
T KOG4426|consen 187 VKRVLVDFSSPNIAKEMHVGHLRSTIIGDSLCRLLEFSGVDVLRRNHVGDWGTQFGMLIAHLFDKFPDYLSVSPPIGDLQ 266 (656)
T ss_pred eeeEEEecCCCcHHHHhhhhhhhhhhHhHHHHHHHHhcCcceEeeccccchHHHHHHHHHHHHHhCCchhccCCCchhHH
Confidence 455556668899999999999999999999999999999999887533333 4444432221
Q ss_pred hchhhhhcCC-CHHHHHHHH------------------HHHHHHHHHHHHHHHHHcCCccCCCCccccCChHHHHHHHHH
Q 003799 210 SLDEDAKKDL-TPSKLRAKA------------------AKFAKATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQIEV 270 (794)
Q Consensus 210 ~~~~~~~~~~-~~~~~~~~~------------------~~~a~~~~~~~~~~~~~lGi~~dwd~~~~T~d~~~~~~v~~~ 270 (794)
.+-++.+..+ ..++|.+++ ...|+-..+.+...+++|.|+..= --+..|...+.++
T Consensus 267 vFYkeSKkrFD~deeFKkrAyq~VV~LQggdp~~~kAW~~ICdvSr~ef~kvY~rLdi~l~e-----~GESFYq~~m~~v 341 (656)
T KOG4426|consen 267 VFYKESKKRFDEDEEFKKRAYQAVVRLQGGDPDIRKAWALICDVSRKEFQKVYNRLDISLKE-----RGESFYQDRMAEV 341 (656)
T ss_pred HHHHHHHhccCcCHHHHHHHHHHeeecccCCChHHHHHHHHHHhhHHHHHHHHHHhcchHhh-----cchhhhhhHHHHH
Confidence 1111111111 123443332 223444446677788899884431 2244688889999
Q ss_pred HHHHHHcCCeeeccc-CceeccCCCccc
Q 003799 271 FGQMSLQGYIYRGKK-PVHWSPSSRTAL 297 (794)
Q Consensus 271 f~~L~~kGlIy~~~~-~v~w~~~~~t~L 297 (794)
.+.|..+|++..+.. .+.|-+.|.-+|
T Consensus 342 veel~~kglvee~~Gr~i~f~~g~~IPL 369 (656)
T KOG4426|consen 342 VEELKSKGLVEEDDGRRIMFPEGCDIPL 369 (656)
T ss_pred HHHHhcCCceeecCCceEeccCCCCcce
Confidence 999999999988764 355655555444
No 104
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=96.51 E-value=0.01 Score=67.03 Aligned_cols=99 Identities=22% Similarity=0.385 Sum_probs=67.4
Q ss_pred EEEcCCCCCCCcccchHHHhHHHHHHHHHHHHhCCCeeEEeccccCCCchHHHHHHhhchhhhhcCCCHHHHHHHHHHHH
Q 003799 153 VLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKAAKFA 232 (794)
Q Consensus 153 ~i~~~pPy~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G~D~hGlpie~~~~k~~~~~~~~~~~~~~~~~~~~~~a 232 (794)
+++-=||-|+|.||||||....|. -|... .|+-..+.-||++. |.+- .
T Consensus 201 Vv~RFPPEpSGyLHIGHAKAALLN----qYfa~-~~~G~LIvRFDDTN--------------------PaKE-------~ 248 (712)
T KOG1147|consen 201 VVTRFPPEPSGYLHIGHAKAALLN----QYFAQ-AYQGKLIVRFDDTN--------------------PAKE-------N 248 (712)
T ss_pred eEEecCCCCCceeehhhHHHHHHH----HHHHH-hcCceEEEEecCCC--------------------cchh-------h
Confidence 334459999999999999766553 33322 23334555667653 1111 2
Q ss_pred HHHHHHHHHHHHHcCCccCCCCccccCChHHHHHHHHHHHHHHHcCCeeecccCc
Q 003799 233 KATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPV 287 (794)
Q Consensus 233 ~~~~~~~~~~~~~lGi~~dwd~~~~T~d~~~~~~v~~~f~~L~~kGlIy~~~~~v 287 (794)
+++.+.+.+++..|||-.| ..|...+|-..+...-.+|.+.|..|-+..|.
T Consensus 249 ~eFe~~IleDl~~LgIkpd----~~TyTSDyF~~i~dycv~likeGKAYvDDTp~ 299 (712)
T KOG1147|consen 249 EEFEDVILEDLSLLGIKPD----RVTYTSDYFDEIMDYCVKLIKEGKAYVDDTPT 299 (712)
T ss_pred HHHHHHHHHHHHHhCcCcc----eeeechhhHHHHHHHHHHHHhcCcccccCCcH
Confidence 2345668999999999333 45666678888889999999999999876664
No 105
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases. Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=95.98 E-value=0.007 Score=68.27 Aligned_cols=68 Identities=18% Similarity=0.231 Sum_probs=53.5
Q ss_pred cchHHHHHHHHhcCCcccccccc----------cccccccCCCCcEEEcccCccccchhhHHHHHHhhhcC--eeecCCC
Q 003799 505 DGNVAVVKYLDEQMSLIMEEPYE----------HKYPYDWRTKKPTIFRATEQWFASVEGFRQAAMDAIGQ--VKWVPPQ 572 (794)
Q Consensus 505 ea~~~ii~~L~~~g~l~~~~~~~----------h~yp~~WRt~~pii~r~t~QWfi~~~~~~~~~l~~i~~--v~~~P~~ 572 (794)
+.-..++..|.++|++...+... ...=+||||++|++++.++|||++++.+++++++.+++ +.|+|+.
T Consensus 118 ~~v~~~f~~L~~~G~iy~~~~~~~yc~~~~t~l~~~evc~~cg~~~~~~~~~qwf~~l~~~~~~l~~~~~~~~~~~~P~~ 197 (382)
T cd00817 118 RAVQEAFVRLYEKGLIYRDNRLVNWCPKLRTAISDIEVCSRSGDVIEPLLKPQWFVKVKDLAKKALEAVKEGDIKFVPER 197 (382)
T ss_pred HHHHHHHHHHHHCCCEEeeeeEEeecCCcCCCCCcchhcccCCCeEEEEecCeeEEehHHHHHHHHHHHhcCCcEEEChH
Confidence 33446778888888876543220 11124899999999999999999999999999999987 9999985
No 106
>KOG1148 consensus Glutaminyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=95.85 E-value=0.02 Score=65.27 Aligned_cols=90 Identities=22% Similarity=0.251 Sum_probs=58.0
Q ss_pred EEcCCCCCCCcccchHHHhHHHHHHHHHHH--H-hCCCeeEEeccccCCCchHHHHHHhhchhhhhcCCCHHHHHHHHHH
Q 003799 154 LHDGPPYANGNLHMGHALNKILKDIINRYK--L-LQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKAAK 230 (794)
Q Consensus 154 i~~~pPy~nG~lHiGHa~~~il~Dii~R~~--r-~~G~~V~~~~G~D~hGlpie~~~~k~~~~~~~~~~~~~~~~~~~~~ 230 (794)
.|-=||-|||.|||||| +-|...|- + +.|.. +.. +|+ ..|++-
T Consensus 250 ~TRFPPEPNG~LHIGHa-----KAInvNFgyAk~~~G~c-yLR--fDD--------------------TNPEkE------ 295 (764)
T KOG1148|consen 250 VTRFPPEPNGILHIGHA-----KAINVNFGYAKAHGGVC-YLR--FDD--------------------TNPEKE------ 295 (764)
T ss_pred EEeCCCCCCceeeecch-----hheeechhhhhhhCCeE-EEe--cCC--------------------CCcchh------
Confidence 34459999999999998 44444432 2 22322 211 233 233332
Q ss_pred HHHHHHHHHHHHHHHcCCccCCCCccccCChHHHHHHHHHHHHHHHcCCeee
Q 003799 231 FAKATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYR 282 (794)
Q Consensus 231 ~a~~~~~~~~~~~~~lGi~~dwd~~~~T~d~~~~~~v~~~f~~L~~kGlIy~ 282 (794)
.++|...+.+....||. ..+-.|.+.+|=...-+.-..|+++|+.|-
T Consensus 296 -ee~yf~sI~e~V~WLG~----~P~kvTysSDyFdqLy~~av~LIrkG~AYV 342 (764)
T KOG1148|consen 296 -EEEYFESIKEMVAWLGF----EPYKVTYSSDYFDQLYELAVELIRKGKAYV 342 (764)
T ss_pred -hHHHHHHHHHHHHHhCC----CceeeecchhHHHHHHHHHHHHHhcCceeE
Confidence 45567778888888886 344567777777777777778999999995
No 107
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=95.79 E-value=0.0074 Score=70.74 Aligned_cols=66 Identities=11% Similarity=0.202 Sum_probs=49.6
Q ss_pred chHHHHHHHHhcCCcccccc---c---cccc----------ccccCCCCcEEEcccCccccchhhHHHHHHhhhcC-eee
Q 003799 506 GNVAVVKYLDEQMSLIMEEP---Y---EHKY----------PYDWRTKKPTIFRATEQWFASVEGFRQAAMDAIGQ-VKW 568 (794)
Q Consensus 506 a~~~ii~~L~~~g~l~~~~~---~---~h~y----------p~~WRt~~pii~r~t~QWfi~~~~~~~~~l~~i~~-v~~ 568 (794)
.-..+++.|.++|.....+. | +..+ ||||||++|++++.++|||++++.+++.+.+.+++ +.|
T Consensus 101 ~v~~~~~~L~~~G~iY~~~~~~~~~~~~~~~l~~~~l~~~~p~~~~~~~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~ 180 (511)
T PRK11893 101 AVQEIFQRLLANGDIYLGKYEGWYCVRCEEFYTESELIEDGYRCPPTGAPVEWVEEESYFFRLSKYQDKLLELYEANPDF 180 (511)
T ss_pred HHHHHHHHHHHCCCEEEeeeeeeccccccccCCHHHhcCCCCCCCCCCCcceEEecCeEEEEcHHHHHHHHHHHHhCCCc
Confidence 34567888888887665332 1 1223 89999999999999999999999999999888764 444
Q ss_pred c-CC
Q 003799 569 V-PP 571 (794)
Q Consensus 569 ~-P~ 571 (794)
+ |+
T Consensus 181 ~~p~ 184 (511)
T PRK11893 181 IQPA 184 (511)
T ss_pred cCCH
Confidence 3 54
No 108
>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Lysyl-tRNA synthetase (6.1.1.6 from EC) is an alpha 2 homodimer that belong to both class I and class II. In eubacteria and eukaryota lysyl-tRNA synthetases belong to class II in the same family as aspartyl tRNA synthetase. The class Ic lysyl-tRNA synthetase family is present in archaea and in a number of bacterial groups that include the alphaproteobacteria and spirochaetes[]. A refined crystal structures shows that the active site of LysU is shaped to position the substrates for the nucleophilic attack of the lysine carboxylate on the ATP alpha-phosphate. No residues are directly involved in catalysis, but a number of highly conserved amino acids and three metal ions coordinate the substrates and stabilise the pentavalent transition state. A loop close to the catalytic pocket, disordered in the lysine-bound structure, becomes ordered upon adenine binding [].; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IRX_A.
Probab=95.49 E-value=0.0048 Score=67.95 Aligned_cols=97 Identities=16% Similarity=0.161 Sum_probs=60.8
Q ss_pred CCcEEEEcCCCCCCCcccchHHHhHHHHHHHHHHHHhCCCeeEEeccccCCC--------chHHHHHHhhchhhhhcCCC
Q 003799 149 GENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHG--------LPIELKVLQSLDEDAKKDLT 220 (794)
Q Consensus 149 ~~~f~i~~~pPy~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G~D~hG--------lpie~~~~k~~~~~~~~~~~ 220 (794)
++.+++-+| -.|+|.+|||+.+.-+..|+++|-.+.+|++|.++..||+.. +|=+ ..++.++..-..--+
T Consensus 22 ~~~~v~~sG-~sPSG~~HIGn~rEv~~~~~V~~al~~~g~~~r~i~~~DD~D~lRKvP~~~p~~-~~~~ylg~Plt~VPd 99 (360)
T PF01921_consen 22 KEPYVFASG-ISPSGLPHIGNFREVLRADMVARALRDRGKDVRLIYFSDDMDPLRKVPPNVPNP-ELEKYLGKPLTRVPD 99 (360)
T ss_dssp -SEEEEEEE-E--SS---HHHHHHHHHHHHHHHHHHTTT-EEEEEEEE-TTSB-----TTS-CC--CCCCTTSBTTTSB-
T ss_pred CccEEEecC-CCCCCCcccccccchhhHHHHHHHHHHcCCCEEEEEEeecCCcccCCCCCCChH-HHHHhcCCccccCCC
Confidence 466777665 578999999999999999999999999999999999999974 1211 112222211000012
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Q 003799 221 PSKLRAKAAKFAKATVKAQMASFKRYGVWA 250 (794)
Q Consensus 221 ~~~~~~~~~~~a~~~~~~~~~~~~~lGi~~ 250 (794)
|. . .|..|++.+...+.+.|..||+-.
T Consensus 100 P~--G-~~~SyaeH~~~~~~~~L~~~gie~ 126 (360)
T PF01921_consen 100 PF--G-CHESYAEHFNAPFEEFLDEFGIEY 126 (360)
T ss_dssp TT--S-SSSCHHHHHHHHHHHHHHTTT---
T ss_pred CC--C-CCccHHHHHHHHHHHHHHHcCCce
Confidence 32 1 257789999999999999999933
No 109
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis]
Probab=95.23 E-value=0.043 Score=62.47 Aligned_cols=98 Identities=17% Similarity=0.198 Sum_probs=73.8
Q ss_pred CcEEEEcCCCCCCCcccchHHHhHHHHHHHHHHHHhCCCeeEEeccccCCC--------chHHHHHHhhchhhhhcCCCH
Q 003799 150 ENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHG--------LPIELKVLQSLDEDAKKDLTP 221 (794)
Q Consensus 150 ~~f~i~~~pPy~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G~D~hG--------lpie~~~~k~~~~~~~~~~~~ 221 (794)
..+++-+| -.|+|.+|||+++-.+..|++.|-.+-+|+.|.+++=||++. +|=....++.++..-..--+|
T Consensus 19 ~~~~v~tG-isPSG~~HIGn~rEv~t~d~V~ralr~~g~~~r~I~~~DD~D~lRkvp~~lp~~~~~e~Ylg~Plt~IPdP 97 (521)
T COG1384 19 DEYVVATG-ISPSGLIHIGNFREVLTADAVRRALRDRGDEVRLIYISDDYDPLRKVPRNLPDPEELEQYLGMPLTEIPDP 97 (521)
T ss_pred CcEEEecC-cCCCCCcccccHHHHHHHHHHHHHHHHcCCceEEEEEccCCcccccCCCCCCChHHHHHHcCCccccCCCC
Confidence 56777665 579999999999999999999999999999999999999984 232233344444321111133
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCccC
Q 003799 222 SKLRAKAAKFAKATVKAQMASFKRYGVWAD 251 (794)
Q Consensus 222 ~~~~~~~~~~a~~~~~~~~~~~~~lGi~~d 251 (794)
.. .|..|++.+...+.+.+.++|+-..
T Consensus 98 ~G---~~~Sya~hf~~~f~~~l~~~Gi~~E 124 (521)
T COG1384 98 FG---CCDSYAEHFLRPFEEFLDEFGIEVE 124 (521)
T ss_pred cc---ccchHHHHHHHHHHHHHHhcCCceE
Confidence 32 4788999999999999999999444
No 110
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=95.20 E-value=0.0096 Score=70.59 Aligned_cols=43 Identities=23% Similarity=0.295 Sum_probs=40.0
Q ss_pred cccccCCCCcEEEcccCccccchhhHHHHHHhhhcCeeecCCC
Q 003799 530 YPYDWRTKKPTIFRATEQWFASVEGFRQAAMDAIGQVKWVPPQ 572 (794)
Q Consensus 530 yp~~WRt~~pii~r~t~QWfi~~~~~~~~~l~~i~~v~~~P~~ 572 (794)
-|+||||++|+++++++|||++++.+++++.+.++.+.++|+.
T Consensus 171 ~p~~~~~~~~~e~~~~~qwF~~l~~~~~~l~~~~~~~~~~p~~ 213 (556)
T PRK12268 171 NPRSKISGSTPEFRETEHFFLDLPAFAERLRAWIESSGDWPPN 213 (556)
T ss_pred CCccccCCCcCeEEecceEEEEhHHHHHHHHHHHhhccCCCHH
Confidence 4899999999999999999999999999999999887788875
No 111
>KOG1195 consensus Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=94.50 E-value=0.36 Score=54.81 Aligned_cols=151 Identities=14% Similarity=0.205 Sum_probs=92.5
Q ss_pred cHHHHHHHhhcCcchhccccCCCCcEEEEcCCCCCCCcccchHHHhHHHHHHHHHHHHhCCCeeEEe-------------
Q 003799 127 EPEIHKLWDDHQVFLRVADKNDGENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYV------------- 193 (794)
Q Consensus 127 E~~~~~~W~~~~~~~~~~~~~~~~~f~i~~~pPy~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~~------------- 193 (794)
+.-++..|+....|-.. +.-.+++-++----|+.+.+.|+||.+..+++-+++...+..|++|..+
T Consensus 88 k~~l~~i~~~~~~~g~~-~~~~~k~iVVefSSPNIAK~FHvGhLRsTiiG~flanl~e~~G~~Vtr~NYLGDWGkQFgll 166 (567)
T KOG1195|consen 88 KSVLPIIEEQREKYGKN-ELGSGKKIVVEFSSPNIAKPFHVGHLRSTIIGNFLANLHEALGWEVTRVNYLGDWGKQFGLL 166 (567)
T ss_pred HHHHHHHHHHhcccCcc-ccccCceEEEEecCCCcccccccchhhhhhhhhHhhhhHHhhCCceeehhhhhHHHHHhhHH
Confidence 33455566666556543 1113567777778999999999999999999999999999999999654
Q ss_pred -ccccCCCc-------hHHHHHHhhchh--hhhcCC---------------CHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 003799 194 -PGWDCHGL-------PIELKVLQSLDE--DAKKDL---------------TPSKLRAKAAKFAKATVKAQMASFKRYGV 248 (794)
Q Consensus 194 -~G~D~hGl-------pie~~~~k~~~~--~~~~~~---------------~~~~~~~~~~~~a~~~~~~~~~~~~~lGi 248 (794)
-||-..|- ||++-.....+. ...++. +.++-.+.=+.|-+-.+....+.++|||+
T Consensus 167 ~~g~~~~g~e~~L~~~pI~hL~dvYVk~nk~~~~~~~~~~~are~f~rlE~~d~e~~k~Wqrfr~lsIe~l~~~Y~Rl~v 246 (567)
T KOG1195|consen 167 ALGFQLYGDEEELQLNPIKHLFDVYVKINKDAEKDPDTAEEAREFFKRLEDGDEEHLKLWQRFRDLSIEKLIKTYNRLNV 246 (567)
T ss_pred hccHHhhCchhhhccchHHHHHHHHHHhhhhhhhCcchHHHHHHHHHHHhcccHHHHHHHHHhhhhhHHHHHHHHHHhce
Confidence 34444443 444322211110 000001 01111111122445556777888899999
Q ss_pred ccCCCCccccCChHHHHHHHHHHHHHHHcCCee
Q 003799 249 WADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIY 281 (794)
Q Consensus 249 ~~dwd~~~~T~d~~~~~~v~~~f~~L~~kGlIy 281 (794)
.||..-.. +..+.+..+.+...+.++||+.
T Consensus 247 --~FD~y~gE-Sqv~~e~~~~~~d~~rs~~l~~ 276 (567)
T KOG1195|consen 247 --KFDEYSGE-SQVSNEKMQEALDLLRSANLTE 276 (567)
T ss_pred --eeeeccch-HHHHHHHHHHHHHHHHhcCCcc
Confidence 66654332 3356777777777777777543
No 112
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=94.49 E-value=0.018 Score=67.89 Aligned_cols=49 Identities=18% Similarity=0.181 Sum_probs=40.9
Q ss_pred cccccccccccCCCCcEEEcccCccccchhhHHHHHHhhhcC---eeecCCC
Q 003799 524 EPYEHKYPYDWRTKKPTIFRATEQWFASVEGFRQAAMDAIGQ---VKWVPPQ 572 (794)
Q Consensus 524 ~~~~h~yp~~WRt~~pii~r~t~QWfi~~~~~~~~~l~~i~~---v~~~P~~ 572 (794)
++..+..|+||||++|++++.++|||++++.+++++++.+++ ..+.|+.
T Consensus 160 ~~~~l~~p~~~~~~~~~e~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~ 211 (530)
T TIGR00398 160 EPTELINPRCKICGAKPELRDSEHYFFRLSAFEKELEEWIRKNPESGSPASN 211 (530)
T ss_pred CHHHhcCCccccCCCcceEEecceEEEEhHHHHHHHHHHHHhCCccCCCcHH
Confidence 455678999999999999999999999999999999999873 4443443
No 113
>KOG1149 consensus Glutamyl-tRNA synthetase (mitochondrial) [Translation, ribosomal structure and biogenesis]
Probab=94.27 E-value=0.19 Score=55.97 Aligned_cols=129 Identities=18% Similarity=0.232 Sum_probs=77.5
Q ss_pred CCCCCCcccchHHHhHHHHHHHHHHHHhCCCeeEEeccccCCCchHHHHHHhhchhhhhcCCCHHHHHHHHHHHHHHHHH
Q 003799 158 PPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKAAKFAKATVK 237 (794)
Q Consensus 158 pPy~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G~D~hGlpie~~~~k~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 237 (794)
-|-|+|.||+|-++|....=++|| ..+|.-++.+=-+|-. . + +....+
T Consensus 39 APSPTGfLHlGgLRTALfNYLfAr--k~gGkFiLRiEDTDq~----------R-------------~-------v~gs~e 86 (524)
T KOG1149|consen 39 APSPTGFLHLGGLRTALFNYLFAR--KKGGKFILRIEDTDQK----------R-------------L-------IRGSEE 86 (524)
T ss_pred cCCCCcceehhhHHHHHHHHHHHH--hcCCeEEEEecccccc----------c-------------c-------ccchHH
Confidence 688999999999999887766655 3467666665533321 0 0 111123
Q ss_pred HHHHHHHHcCCccCCCCccccC---Ch----HHHHHHHHHHHHHHHcCCeeec----------------ccCce-eccCC
Q 003799 238 AQMASFKRYGVWADWNNPYLTL---DP----EYEAAQIEVFGQMSLQGYIYRG----------------KKPVH-WSPSS 293 (794)
Q Consensus 238 ~~~~~~~~lGi~~dwd~~~~T~---d~----~~~~~v~~~f~~L~~kGlIy~~----------------~~~v~-w~~~~ 293 (794)
.+.++++.+|+ +||.-=.-. -| +.-+.-.+...+|.+.|.+||- .+.++ |+-.|
T Consensus 87 ~i~~~L~w~nl--~~DEgP~~gG~~GPY~QS~R~eiY~kyae~Ll~sG~AYrCFCs~~rL~~lrk~A~k~~~~p~YD~kc 164 (524)
T KOG1149|consen 87 AIYEDLKWANL--DWDEGPGVGGPFGPYEQSERLEIYKKYAEKLLESGHAYRCFCSEERLDLLRKSALKKHEIPRYDRKC 164 (524)
T ss_pred HHHHHHHhcCC--CcccCCCcCCCCCchhhHHHHHHHHHHHHHHHhcCCeeEeccCHHHHHHHHHhhhccCCCCcccchh
Confidence 36788999999 998632111 11 2334455667789999999982 22222 33333
Q ss_pred CccccccccccCCcccccccceeEEeccC
Q 003799 294 RTALAEAELEYPEGHVSRSIYAVFRMVSA 322 (794)
Q Consensus 294 ~t~Lae~Evey~e~~~~~~~~v~F~l~~~ 322 (794)
.-|+++|++... ..+.-..|+|++.+.
T Consensus 165 -a~ls~~ei~~~l-akg~pf~iRFrl~~~ 191 (524)
T KOG1149|consen 165 -ANLSDAEIKQKL-AKGTPFTIRFRLPKE 191 (524)
T ss_pred -cccCHHHHHHHH-hcCCCeeEEEecCCC
Confidence 346777775322 233334578988753
No 114
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=94.01 E-value=0.0088 Score=61.86 Aligned_cols=90 Identities=19% Similarity=0.214 Sum_probs=60.9
Q ss_pred cchHHHHHHHHhcCCcccccccccccccccC--------CCCcEEEcccCccccchhhHHHHHHhhhcCeeecCCCCCCC
Q 003799 505 DGNVAVVKYLDEQMSLIMEEPYEHKYPYDWR--------TKKPTIFRATEQWFASVEGFRQAAMDAIGQVKWVPPQEAPG 576 (794)
Q Consensus 505 ea~~~ii~~L~~~g~l~~~~~~~h~yp~~WR--------t~~pii~r~t~QWfi~~~~~~~~~l~~i~~v~~~P~~~~~~ 576 (794)
|+...+.+.|. ...-++..-..+.+||.-. +++|..-....-.++.+++ +||+++.+++.. |.+++++
T Consensus 116 ec~am~~~~lg-~~~dih~~G~Dl~fpH~~~~~a~~~a~~g~~~~~~~~h~~~v~~~g--~KMSKs~Gn~v~-~~dll~~ 191 (213)
T cd00672 116 ECSAMAMKYLG-ETFDIHGGGVDLIFPHHENEIAQSEAATGKPFARYWLHTGHLTIDG--EKMSKSLGNFIT-VRDALKK 191 (213)
T ss_pred HHHHHHHHHcC-CCccEEeecCCCCcChHHHHHHHHHHHhCCCCCcEEEEEEEEeccC--cchhhcCCCccC-HHHHHHH
Confidence 66666666666 3356666677777777632 3333211111113345555 689999998776 5667788
Q ss_pred CCCchhhhhhhhcCCCCceecC
Q 003799 577 YGADVLRLWVSSVDYTGDVMIG 598 (794)
Q Consensus 577 yGaD~lRl~las~~~~~Di~~s 598 (794)
||+|++|||+++..+.++++|+
T Consensus 192 ~~~da~R~~~l~~~~~~~l~f~ 213 (213)
T cd00672 192 YDPEVLRLALLSSHYRSPLDFS 213 (213)
T ss_pred cCHHHHHHHHHhCCcCCCCCCC
Confidence 9999999999999999888775
No 115
>cd07956 Anticodon_Ia_Arg Anticodon-binding domain of arginyl tRNA synthetases. This domain is found in arginyl tRNA synthetases (ArgRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ArgRS catalyzes the transfer of arginine to the 3'-end of its tRNA.
Probab=92.92 E-value=1.1 Score=43.90 Aligned_cols=135 Identities=12% Similarity=0.082 Sum_probs=81.9
Q ss_pred CCCCchhhhhhhhcCCCCceecChHHHHH--------HHHHHHHHHhHHHHHHhcccCCCCCCCcCCCCC-ChhhHHHHH
Q 003799 576 GYGADVLRLWVSSVDYTGDVMIGPQVLRQ--------MSDIYRKLRGTLRYLLGNLHDWRVGNSISYDDL-PMIDQYALF 646 (794)
Q Consensus 576 ~yGaD~lRl~las~~~~~Di~~s~~~l~~--------~~~~~~kl~Nt~rfll~nl~~~~~~~~~~~~~l-~~~D~~il~ 646 (794)
+.|.|++||.+++.....++.|+.+.+.. +.-.+.|+.|.++-.-. .......+....+ .+.++-++.
T Consensus 2 ~i~~~a~~~~~l~~~~~~~~~fd~~~~~~~~~~~~~yi~ya~aRi~nIl~k~~~---~~~~~~~~~~~ll~~~~E~~L~~ 78 (156)
T cd07956 2 EVGVGAVKYQDLSNKRIKDYTFDWERMLSFEGDTGPYLQYAHARLCSILRKAGE---TIEAEADADLSLLPEPDERDLIL 78 (156)
T ss_pred ccchhHHHHHHHhcCCCCCceecHHHHHhhcCCCchhHHHHHHHHHHHHHhCCC---cCccccccchhhcCCHHHHHHHH
Confidence 56899999999999888888888765321 23455666666543210 0000001111112 334667788
Q ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhHHHHHhhccccccCCCChH---hHHHHHHHHHHHHHHHHHHh
Q 003799 647 QLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRLYTGGTTSF---TRRSCQTVLSAHLLSIVRVI 719 (794)
Q Consensus 647 ~l~~lv~~v~~~~e~y~f~~ai~~l~~f~~~~lsn~Yle~~K~rly~~~~d~~---~r~s~~~vL~~iL~~l~~lL 719 (794)
.+..+.+.+.+++.+.+++.++..+.++... +.+|| +.. +. .+.+.. .|-.....+..++...+.+|
T Consensus 79 ~l~~~~~~i~~~~~~~~~~~l~~~l~~L~~~-~~~ff-d~v--~V--~~~~~~i~~nRL~Ll~~v~~vl~~~l~ll 148 (156)
T cd07956 79 LLAKFPEVVKNAAETLEPHTIATYLFDLAHA-FSKFY-NAC--PV--LGAEEELRNARLALVAAARQVLANGLDLL 148 (156)
T ss_pred HHHHhHHHHHHHHHHcCcHHHHHHHHHHHHH-HHHHH-hcC--cc--cCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8888888889999999999999999998753 55544 433 22 222322 23344444555555555555
No 116
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=92.78 E-value=0.026 Score=68.45 Aligned_cols=54 Identities=19% Similarity=0.238 Sum_probs=46.8
Q ss_pred ceEEEeeeccCcccCCeeecCCCCCcccEEeccCcccccCCCCceeecCCCChhhHHHHH
Q 003799 415 KLVIKKTLAGSDLENCRYVHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSL 474 (794)
Q Consensus 415 ~~~~~~~~~G~~L~g~~~~~Pl~~~~~pvvi~~~~V~~~~GTG~Vh~aPaHg~~D~~~~~ 474 (794)
.++.++..+|..|+|..+.+|.. + ..++||....|||+|..+|+|.+.|+.+..
T Consensus 259 gvt~~~~a~~h~lv~~~~~~~~~-----~-~~a~fv~~~~~~~~~~~~~~~~~k~gv~~g 312 (814)
T COG0495 259 GVTYVVLAPEHPLVGKLVTNPQT-----P-LVAEFVDECKGTGVVESVPAHAEKDGVFLG 312 (814)
T ss_pred CeEEEEEeCCchHHHHHhcCccc-----h-hHHHHHHHhcCCCceeeeeccCCCcceecc
Confidence 56788889999999999888865 2 458999999999999999999999998764
No 117
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=92.25 E-value=0.13 Score=57.03 Aligned_cols=59 Identities=32% Similarity=0.539 Sum_probs=47.7
Q ss_pred cchHHHHHHHHhcCCcccccccccccccccCCCCcEEEcccCccccchhhHHHHHHhhhcCeeecCCC
Q 003799 505 DGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTKKPTIFRATEQWFASVEGFRQAAMDAIGQVKWVPPQ 572 (794)
Q Consensus 505 ea~~~ii~~L~~~g~l~~~~~~~h~yp~~WRt~~pii~r~t~QWfi~~~~~~~~~l~~i~~v~~~P~~ 572 (794)
+.-..+++.|.++|.+...+ ++..| |+++++++|||++++++++.+++.+++++|+|+.
T Consensus 119 ~~v~~~f~~L~~~G~iY~~~-----~~v~~----~v~~~~~~qwf~~l~~~~~~l~~~~~~~~~~P~~ 177 (338)
T cd00818 119 ESVWWVFKQLHEKGLLYRGY-----KVVPW----PLIYRATPQWFIRVTKIKDRLLEANDKVNWIPEW 177 (338)
T ss_pred HHHHHHHHHHHHCCCEeccC-----Ceeee----EEEEEecCeEEEEcHHHHHHHHHHHhcCcEECHH
Confidence 34455677888888776443 35556 9999999999999999999999999999998874
No 118
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=90.34 E-value=0.23 Score=60.15 Aligned_cols=60 Identities=12% Similarity=0.068 Sum_probs=46.6
Q ss_pred chHHHHHHHHhcCCccccc---cc--------cccc----ccccCCCCcEEEcccCccccchhhHHHHHHhhhcC
Q 003799 506 GNVAVVKYLDEQMSLIMEE---PY--------EHKY----PYDWRTKKPTIFRATEQWFASVEGFRQAAMDAIGQ 565 (794)
Q Consensus 506 a~~~ii~~L~~~g~l~~~~---~~--------~h~y----p~~WRt~~pii~r~t~QWfi~~~~~~~~~l~~i~~ 565 (794)
.-..+++.|.++|.....+ .| .-++ |+||+|+.|++++.++|||++++.+++++.+.+++
T Consensus 104 ~v~~~~~~L~~kG~IY~~~~~~~yc~~~~~~l~~~~l~~~~~c~~cg~~~e~~~~~~~f~~l~~~~~~l~~~~~~ 178 (648)
T PRK12267 104 VVQKIFEKLYEQGDIYKGEYEGWYCVSCETFFTESQLVDGGKCPDCGREVELVKEESYFFRMSKYQDRLLEYYEE 178 (648)
T ss_pred HHHHHHHHHHHCCCEEEeeEEEeecCCCCccCChHHhccCCcCCCCCCcCeEEecceEEEEcHHHHHHHHHHHhh
Confidence 4456788888888765421 11 1222 89999999999999999999999999999888863
No 119
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase. Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=86.02 E-value=2.7 Score=45.44 Aligned_cols=69 Identities=25% Similarity=0.409 Sum_probs=42.0
Q ss_pred CCCCcccchHHHhHHHHHHHHHHHHhCCCeeEEeccccCCCchHHHHHHhhchhhhhcCCCHHHHHHHHHHHHHHHHHHH
Q 003799 160 YANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKAAKFAKATVKAQ 239 (794)
Q Consensus 160 y~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G~D~hGlpie~~~~k~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 239 (794)
-|+|.|||||..+.+.. ..++|.. |+++.+.-+ |-|++ . ....+++++++ +....
T Consensus 7 ~PTG~lHLG~~~~al~~--~~~lQ~a-g~~~~~~Ia-D~ha~------t-------~~~~~~~~~~~--------~~~~~ 61 (280)
T cd00806 7 QPSGSLHLGHYLGAFRF--WVWLQEA-GYELFFFIA-DLHAL------T-------VKQLDPEELRQ--------NTREN 61 (280)
T ss_pred CCCchhhHHHHHHHHHH--HHHHHhC-CCCEEEEec-chHHH------h-------CCCCCHHHHHH--------HHHHH
Confidence 37899999999886654 4455554 888776653 33322 1 11135666533 33345
Q ss_pred HHHHHHcCCccCCCCc
Q 003799 240 MASFKRYGVWADWNNP 255 (794)
Q Consensus 240 ~~~~~~lGi~~dwd~~ 255 (794)
..++..+|+ |++..
T Consensus 62 ~~~~lA~G~--dp~k~ 75 (280)
T cd00806 62 AKDYLACGL--DPEKS 75 (280)
T ss_pred HHHHHHcCC--CcccC
Confidence 667778999 77554
No 120
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed
Probab=84.40 E-value=5.9 Score=44.50 Aligned_cols=79 Identities=20% Similarity=0.236 Sum_probs=47.0
Q ss_pred CCcEEEEcCCCCCCCcccchHHHhHHHHHHHHHHHHhCCCeeEEeccccCCCchHHHHHHhhchhhhhcCCCHHHHHHHH
Q 003799 149 GENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKA 228 (794)
Q Consensus 149 ~~~f~i~~~pPy~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G~D~hGlpie~~~~k~~~~~~~~~~~~~~~~~~~ 228 (794)
+++|.+.+|. -|+|.+||||... -..++++|. .|++|.+..+=++ .. . .+ ..++++++
T Consensus 64 ~~~~~iytG~-~PSG~lHLGh~~~---~~~~~~lQ~-~g~~~~i~IaD~h-a~------~------~~-~~~~e~~~--- 121 (368)
T PRK12285 64 GKPFAVYTGF-MPSGPMHIGHKMV---FDELKWHQE-FGANVYIPIADDE-AY------A------AR-GLSWEETR--- 121 (368)
T ss_pred CCCeEEEEcc-CCCCCccHHHHHH---HHHHHHHHh-cCCCEEEEecchH-HH------h------cC-CCCHHHHH---
Confidence 4677777763 3459999999752 334556666 6888877664332 11 1 01 35666653
Q ss_pred HHHHHHHHHHHHHHHHHcCCccCCCCcc
Q 003799 229 AKFAKATVKAQMASFKRYGVWADWNNPY 256 (794)
Q Consensus 229 ~~~a~~~~~~~~~~~~~lGi~~dwd~~~ 256 (794)
+++.+ ...++..+|+ |.++..
T Consensus 122 -~~~~~----~~~~~lA~G~--Dp~k~~ 142 (368)
T PRK12285 122 -EWAYE----YILDLIALGF--DPDKTE 142 (368)
T ss_pred -HHHHH----HHHHHHHhCC--CccceE
Confidence 33444 3456779999 766543
No 121
>PLN02486 aminoacyl-tRNA ligase
Probab=80.58 E-value=16 Score=41.34 Aligned_cols=89 Identities=22% Similarity=0.287 Sum_probs=49.4
Q ss_pred CCCcEEEEcCCCCCCC-cccchHHHhHHHHHHHHHHHHhCCCeeEEeccccCCCchHHHHHHhhchhhhhcCCCHHHHHH
Q 003799 148 DGENFVLHDGPPYANG-NLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRA 226 (794)
Q Consensus 148 ~~~~f~i~~~pPy~nG-~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G~D~hGlpie~~~~k~~~~~~~~~~~~~~~~~ 226 (794)
.+++|.+.+|. -|+| .+||||... ...+..+|...|..+....+ |. + +.. ..+.+.+++
T Consensus 70 ~~~~~~vYtG~-~PSg~~lHlGHlv~---~~~~~~lQ~~~~~~~~I~ia-D~-----e-~~~-------~~~~~~e~i-- 129 (383)
T PLN02486 70 KGEKFYLYTGR-GPSSEALHLGHLIP---FMFTKYLQDAFKVPLVIQLT-DD-----E-KFL-------WKNLSVEES-- 129 (383)
T ss_pred cCCCeEEEeCC-CCCCccccHHHHHH---HHHHHHHHHhCCCeEEEEec-CH-----H-HHh-------hcCCCHHHH--
Confidence 35678878753 5778 599999544 44454556666776666643 43 1 222 224666665
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCccCCCCccccCChHHH
Q 003799 227 KAAKFAKATVKAQMASFKRYGVWADWNNPYLTLDPEYE 264 (794)
Q Consensus 227 ~~~~~a~~~~~~~~~~~~~lGi~~dwd~~~~T~d~~~~ 264 (794)
++++.++ .+++..+|+ |-++.+.-.+-.+.
T Consensus 130 --~~~~~en----~~~iiA~G~--dp~kt~I~s~~~~~ 159 (383)
T PLN02486 130 --QRLAREN----AKDIIACGF--DVERTFIFSDFDYV 159 (383)
T ss_pred --HHHHHHH----HHHHHHhCC--CCcceEEEeccHHH
Confidence 3444444 444557888 54443322344443
No 122
>PLN02563 aminoacyl-tRNA ligase
Probab=80.16 E-value=1.4 Score=55.51 Aligned_cols=66 Identities=15% Similarity=0.239 Sum_probs=50.4
Q ss_pred chHHHHHHHHhcCCccccccc--------------ccccccccCCCCcEEEcccCccccchhhHHHHHHhhhcCeeecCC
Q 003799 506 GNVAVVKYLDEQMSLIMEEPY--------------EHKYPYDWRTKKPTIFRATEQWFASVEGFRQAAMDAIGQVKWVPP 571 (794)
Q Consensus 506 a~~~ii~~L~~~g~l~~~~~~--------------~h~yp~~WRt~~pii~r~t~QWfi~~~~~~~~~l~~i~~v~~~P~ 571 (794)
....+...|.++|++...+.. +-.+++||||+.+++.+...|||++++.+++..++-++...| |+
T Consensus 213 ~~q~~F~~L~~~GliY~~~~~v~wcp~~~T~La~~Ev~~~~~~~~~~~~~~~~~~q~f~~it~ya~~L~~~l~~~~w-p~ 291 (963)
T PLN02563 213 WTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGLSERGGHPVIRKPMRQWMLKITAYADRLLEDLDDLDW-PE 291 (963)
T ss_pred HHHHHHHHHHHCCCEEeeeeeeeecCCcCCCCCHHHhhcCCCcCCCCceEEEecceeEEecchhHHHHHHhhhhcCC-CH
Confidence 344566677777776654433 123678999999999999999999999999999998877665 65
Q ss_pred C
Q 003799 572 Q 572 (794)
Q Consensus 572 ~ 572 (794)
.
T Consensus 292 ~ 292 (963)
T PLN02563 292 S 292 (963)
T ss_pred H
Confidence 3
No 123
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=78.27 E-value=6 Score=42.59 Aligned_cols=71 Identities=17% Similarity=0.353 Sum_probs=39.4
Q ss_pred CCC-cccchHHHhHHHHHHHHHHHHhCCCeeEEeccccCCCchHHHHHHhhchhhhhcCCCHHHHHHHHHHHHHHHHHHH
Q 003799 161 ANG-NLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKAAKFAKATVKAQ 239 (794)
Q Consensus 161 ~nG-~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G~D~hGlpie~~~~k~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 239 (794)
|+| .||+||... +. .+.++|. .|+++.++.| |-|++-. .+..+..++.-.+++++ .++...+
T Consensus 8 PTg~~lHlGh~~~-l~--~~~~lq~-~g~~~~~~I~-d~~a~~~----d~sg~~~~r~~~~~~~i--------~~n~~~~ 70 (273)
T cd00395 8 PTADSLHIGHLIG-LL--TFRRFQH-AGHRPIFLIG-GQTGIIG----DPSGKKSERTLNDPEEV--------RQNIRRI 70 (273)
T ss_pred CCCCCccHHHHHH-HH--HHHHHHH-CCCCEEEEEe-cCceeeC----CCCCccccccCCCHHHH--------HHHHHHH
Confidence 789 699999887 32 3446665 5888877665 2333210 01101111222355544 3344556
Q ss_pred HHHHHHcCC
Q 003799 240 MASFKRYGV 248 (794)
Q Consensus 240 ~~~~~~lGi 248 (794)
.+++.++|+
T Consensus 71 ~~~~~a~g~ 79 (273)
T cd00395 71 AAQYLAVGI 79 (273)
T ss_pred HHHHHHhcC
Confidence 778889998
No 124
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed
Probab=77.06 E-value=9.2 Score=43.64 Aligned_cols=95 Identities=19% Similarity=0.191 Sum_probs=56.6
Q ss_pred CCCcccchHHHhHHHHHHHHHHHHhCCCeeEEeccccCCCchHHHHHHhhchhhhhcCCCHHHHHHHHHHHHHHHHHHHH
Q 003799 161 ANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKAAKFAKATVKAQM 240 (794)
Q Consensus 161 ~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G~D~hGlpie~~~~k~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 240 (794)
|+|.|||||..+.+-. ..+.+...|+++.|.. -|-|-+- ...+|+++++... .+.
T Consensus 11 PTG~lHLGNylGaik~--~v~lq~q~~~~~~~~I-ADlHAlT--------------~~~dp~~lr~~~~--------e~a 65 (431)
T PRK12284 11 TTGTPHLGNYAGAIRP--AIAASRQPGVESFYFL-ADYHALI--------------KCDDPARIQRSTL--------EIA 65 (431)
T ss_pred CCCcchHHHHHHHHHH--HHHHHHhCCCcEEEEe-echhhcc--------------CCCCHHHHHHHHH--------HHH
Confidence 7899999996665532 2355555689876665 3444321 1135666644322 245
Q ss_pred HHHHHcCCccCCCC--ccccC-ChHHHHHHHHHHHHHHHcCCeeec
Q 003799 241 ASFKRYGVWADWNN--PYLTL-DPEYEAAQIEVFGQMSLQGYIYRG 283 (794)
Q Consensus 241 ~~~~~lGi~~dwd~--~~~T~-d~~~~~~v~~~f~~L~~kGlIy~~ 283 (794)
.++...|+ |-++ .|.-. -|++ ....|++..+-..|.+-|-
T Consensus 66 a~~LA~Gl--DPek~~if~QSdvpeh-~EL~wiL~~it~~g~L~Rm 108 (431)
T PRK12284 66 ATWLAAGL--DPERVTFYRQSDIPEI-PELTWLLTCVAGKGLLNRA 108 (431)
T ss_pred HHHHHhCC--CccceEEEECCcchhH-HHHHHHHHhhhhHHHHHhh
Confidence 56678999 5543 44444 3444 4556777777777766553
No 125
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=68.76 E-value=4.3 Score=50.67 Aligned_cols=67 Identities=15% Similarity=0.253 Sum_probs=48.8
Q ss_pred chHHHHHHHHhcCCccccccc---------------ccccccccCCCCcEEEcccCccccchhhHHHHHHhhhcCeeecC
Q 003799 506 GNVAVVKYLDEQMSLIMEEPY---------------EHKYPYDWRTKKPTIFRATEQWFASVEGFRQAAMDAIGQVKWVP 570 (794)
Q Consensus 506 a~~~ii~~L~~~g~l~~~~~~---------------~h~yp~~WRt~~pii~r~t~QWfi~~~~~~~~~l~~i~~v~~~P 570 (794)
....+...|-++|++...+.. ....++||||+.+++.+..+|||++++.+++++++.++.....|
T Consensus 131 ~~~~~F~~L~~kGliy~~~~~v~wcp~~~t~La~~ev~~~g~~~~~g~~v~~~~~~~~f~~i~~~~~~l~~~l~~~~~wp 210 (842)
T TIGR00396 131 WTQWIFLELFEKGLAYVKEADVNWCPNDGTVLANEQVDSDGRSWRGGTPVEKKELKQWFLKITAYAEELLNDLEELDHWP 210 (842)
T ss_pred HHHHHHHHHHHCCCeEeeccceEEeCCCCCCccHHHHhhcCccccCCCcceEeecceeEEehhhhHHHHHHHHhhhcccc
Confidence 334556677777776543322 12236899999999999999999999999999888777655446
Q ss_pred CC
Q 003799 571 PQ 572 (794)
Q Consensus 571 ~~ 572 (794)
+.
T Consensus 211 ~~ 212 (842)
T TIGR00396 211 ES 212 (842)
T ss_pred HH
Confidence 53
No 126
>PLN02886 aminoacyl-tRNA ligase
Probab=67.93 E-value=11 Score=42.52 Aligned_cols=94 Identities=15% Similarity=0.238 Sum_probs=49.9
Q ss_pred CCCCcccchHHHhHHHHHHHHHHHHhCCCeeEEeccccCCCchHHHHHHhhchhhhhcCCCHHHHHHHHHHHHHHHHHHH
Q 003799 160 YANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKAAKFAKATVKAQ 239 (794)
Q Consensus 160 y~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G~D~hGlpie~~~~k~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 239 (794)
-|+|.+||||.++.+- -++++|. |+++.+.. -|-|-+- ..-+++++++.. ...
T Consensus 54 qPSG~lHLGnylGai~--~~v~lQ~--~~~~~~~I-ADlHAlt--------------~~~~~~~lr~~~--------~~~ 106 (389)
T PLN02886 54 QPTGSIHLGNYLGAIK--NWVALQE--TYDTFFCV-VDLHAIT--------------LPHDPRELGKAT--------RST 106 (389)
T ss_pred CCCCccHHHHHHHHHH--HHHHHhc--cCCEEEEE-ecHHHhh--------------CCCCHHHHHHHH--------HHH
Confidence 3579999999877662 2335554 88876554 3333211 012566664432 234
Q ss_pred HHHHHHcCCccCCCCccccC-ChHHHHHHHHHHHHHHHcCCee
Q 003799 240 MASFKRYGVWADWNNPYLTL-DPEYEAAQIEVFGQMSLQGYIY 281 (794)
Q Consensus 240 ~~~~~~lGi~~dwd~~~~T~-d~~~~~~v~~~f~~L~~kGlIy 281 (794)
..++..+|+..+=...|.-. .+++. ...|++..+..-|.+.
T Consensus 107 ~a~~lA~GlDP~ks~if~QS~v~e~~-eL~wil~~~t~~g~L~ 148 (389)
T PLN02886 107 AAIYLACGIDPSKASVFVQSHVPAHA-ELMWLLSCSTPIGWLN 148 (389)
T ss_pred HHHHHHcCcCccceEEEEeCCCchhH-HHHHHHHhhCcHHHHH
Confidence 55677999933322333333 34443 3455665544444443
No 127
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=66.84 E-value=8.8 Score=41.21 Aligned_cols=72 Identities=17% Similarity=0.150 Sum_probs=42.1
Q ss_pred CCCC-cccchHHHhHHHHHHHHHHHHhCCCeeEEeccccCCCchHHHHHHhhchhhhhcCCCHHHHHHHHHHHHHHHHHH
Q 003799 160 YANG-NLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKAAKFAKATVKA 238 (794)
Q Consensus 160 y~nG-~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G~D~hGlpie~~~~k~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 238 (794)
-|+| .+|+||... +. .+.|+++. |++|.+.-|= -|++-. .+..+.+++...+++++++ +...
T Consensus 8 ~PTg~~lHLG~~~~-~~--~~~~lq~~-g~~~~ilI~D-~~a~~~----~~~~~~~~r~~~~~~~i~~--------~~~~ 70 (269)
T cd00805 8 DPTAPSLHLGHLVP-LM--KLRDFQQA-GHEVIVLIGD-ATAMIG----DPSGKSEERKLLDLELIRE--------NAKY 70 (269)
T ss_pred CCCCCcccHHHHHH-HH--HHHHHHHC-CCeEEEEECC-CeeecC----CCCCccccccCCCHHHHHH--------HHHH
Confidence 3789 899999874 33 57677776 8888776653 232200 0111122244566766532 3344
Q ss_pred HHHHHHHcCC
Q 003799 239 QMASFKRYGV 248 (794)
Q Consensus 239 ~~~~~~~lGi 248 (794)
+..++..+|.
T Consensus 71 ~~~~~~a~g~ 80 (269)
T cd00805 71 YKKQLKAILD 80 (269)
T ss_pred HHHHHHHHHc
Confidence 6777788887
No 128
>PRK08560 tyrosyl-tRNA synthetase; Validated
Probab=66.27 E-value=18 Score=40.01 Aligned_cols=40 Identities=25% Similarity=0.343 Sum_probs=25.1
Q ss_pred CcEEEEcCCCCCCCcccchHHHhHHHHHHHHHHHHhCCCeeEEec
Q 003799 150 ENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVP 194 (794)
Q Consensus 150 ~~f~i~~~pPy~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~ 194 (794)
+++.+.+| --|+|.+||||.. .+.. ++++|++ |+++.+.-
T Consensus 29 ~~~~v~~G-~~PTG~lHLG~~~-~~~~--~~~lq~~-g~~~~i~I 68 (329)
T PRK08560 29 EEPKAYIG-FEPSGKIHLGHLL-TMNK--LADLQKA-GFKVTVLL 68 (329)
T ss_pred CCCEEEEc-cCCCCcchhhhhH-HHHH--HHHHHHC-CCeEEEEE
Confidence 34444443 3567999999954 4444 6677764 88766555
No 129
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=65.31 E-value=5.9 Score=43.57 Aligned_cols=62 Identities=16% Similarity=0.142 Sum_probs=47.6
Q ss_pred hHHHHHHHHhcCCcccccccccccccccCCCCcE-EEcccCccccchhhHHHHHHhhhcCee--ecCC
Q 003799 507 NVAVVKYLDEQMSLIMEEPYEHKYPYDWRTKKPT-IFRATEQWFASVEGFRQAAMDAIGQVK--WVPP 571 (794)
Q Consensus 507 ~~~ii~~L~~~g~l~~~~~~~h~yp~~WRt~~pi-i~r~t~QWfi~~~~~~~~~l~~i~~v~--~~P~ 571 (794)
-..+++.|.++|.+...+ +.-++|-+|++.+ +++.++|||.++..+++.+.+.+++.. ++|+
T Consensus 101 v~~i~~~L~ekG~iY~~~---~~~~yc~~~~~~l~e~~~~~~~ff~l~~~~~~l~~~~~~~~~~~~p~ 165 (319)
T cd00814 101 VQEFFKKLYENGYIYEGE---YEGLYCVSCERFLPEWREEEHYFFRLSKFQDRLLEWLEKNPDFIWPE 165 (319)
T ss_pred HHHHHHHHHHCCCEEeee---eeeeECCCCCcEeeEEEeeeeEEEEhHHHHHHHHHHHHhCCccCCCH
Confidence 356888999999875433 3456788888876 899999999999999999998877432 4454
No 130
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=65.16 E-value=3.8 Score=49.93 Aligned_cols=35 Identities=14% Similarity=0.266 Sum_probs=32.1
Q ss_pred cccccCCCCcEEEcccCccccchhhHHHHHHhhhc
Q 003799 530 YPYDWRTKKPTIFRATEQWFASVEGFRQAAMDAIG 564 (794)
Q Consensus 530 yp~~WRt~~pii~r~t~QWfi~~~~~~~~~l~~i~ 564 (794)
.|+|++|+.|++++.++|||++++.+++.+++.++
T Consensus 169 ~~~~~~~g~~~e~~~~~~~f~~l~~~~~~l~~~~~ 203 (673)
T PRK00133 169 NPKSAISGATPVLKESEHFFFKLPRFEEFLKEWIT 203 (673)
T ss_pred CCccccCCCcceEEecceEEEEHHHHHHHHHHHHh
Confidence 38899999999999999999999999998888875
No 131
>PF05746 DALR_1: DALR anticodon binding domain; InterPro: IPR008909 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This all alpha helical domain is the anticodon binding domain of Arginyl tRNA synthetase. This domain is known as the DALR domain after characteristic conserved amino acids [].; GO: 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1F7V_A 1F7U_A 1BS2_A 1IQ0_A.
Probab=60.21 E-value=68 Score=29.25 Aligned_cols=79 Identities=13% Similarity=0.161 Sum_probs=51.3
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhHHHHHhhccccccCCCCh--HhHHHHHHHHHHHHHHH
Q 003799 638 PMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRLYTGGTTS--FTRRSCQTVLSAHLLSI 715 (794)
Q Consensus 638 ~~~D~~il~~l~~lv~~v~~~~e~y~f~~ai~~l~~f~~~~lsn~Yle~~K~rly~~~~d~--~~r~s~~~vL~~iL~~l 715 (794)
.+.++.++..+..+.+.+..+++.++.+.+++.++++... ++.+| +.. +........ ..|-........++...
T Consensus 32 ~~~e~~L~~~l~~~~~~l~~a~~~~~p~~l~~yL~~La~~-f~~fy-~~~--~I~~~~~~~~~~~RL~Ll~~v~~vl~~~ 107 (119)
T PF05746_consen 32 EEEERELLKQLARFPDVLEKAAKDLEPHKLCDYLYELAQA-FNSFY-DNV--RILDEDEEIRKNNRLALLKAVRQVLKNG 107 (119)
T ss_dssp SHHHHHHHHHHCTHHHHHHHHHHHT-CHHHHHHHHHHHHH-HHHHH-HHS---STTSTTCHH-HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-HHHHH-hhc--cccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788999999999999999999999999999999864 77766 432 333222221 23434444444555555
Q ss_pred HHHhc
Q 003799 716 VRVIA 720 (794)
Q Consensus 716 ~~lLa 720 (794)
+.+|.
T Consensus 108 l~llg 112 (119)
T PF05746_consen 108 LDLLG 112 (119)
T ss_dssp HHHTT
T ss_pred HHHcC
Confidence 55543
No 132
>PRK12556 tryptophanyl-tRNA synthetase; Provisional
Probab=59.37 E-value=24 Score=39.19 Aligned_cols=67 Identities=21% Similarity=0.287 Sum_probs=37.3
Q ss_pred CCCcccchHHHhHHHHHHHHHHHHhCCCeeEEeccccCCCchHHHHHHhhchhhhhcCCCHHHHHHHHHHHHHHHHHHHH
Q 003799 161 ANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKAAKFAKATVKAQM 240 (794)
Q Consensus 161 ~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G~D~hGlpie~~~~k~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 240 (794)
|+|.+||||.++.+-. ..+.+.-.|.++.+.-. |-|-+- . .-+++++++. + ....
T Consensus 12 PTG~~HLGnylga~k~--~~~lq~~~~~~~~~~IA-DlHalt-------------~-~~~~~~l~~~----~----~~~~ 66 (332)
T PRK12556 12 PTGYPHLGNYIGAIKP--ALQMAKNYEGKALYFIA-DYHALN-------------A-VHDPEQFRSY----T----REVA 66 (332)
T ss_pred CCCcchHHHHHHHHHH--HHHHHHhcCCeEEEEEe-chhhcc-------------C-CCCHHHHHHH----H----HHHH
Confidence 6799999997665432 22445545766766542 333221 0 1256665433 2 2345
Q ss_pred HHHHHcCCccCCCC
Q 003799 241 ASFKRYGVWADWNN 254 (794)
Q Consensus 241 ~~~~~lGi~~dwd~ 254 (794)
.++...|+ |-++
T Consensus 67 ~~~lA~Gl--DP~k 78 (332)
T PRK12556 67 ATWLSLGL--DPED 78 (332)
T ss_pred HHHhheee--cccc
Confidence 56669999 6554
No 133
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A ....
Probab=58.87 E-value=35 Score=36.92 Aligned_cols=41 Identities=22% Similarity=0.326 Sum_probs=24.7
Q ss_pred CcEEEEcCCCCCCCcccchHHHhHHHHHHHHHHHHhCCCeeEEecc
Q 003799 150 ENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPG 195 (794)
Q Consensus 150 ~~f~i~~~pPy~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G 195 (794)
+++.+.+|. -|+|.|||||.... ..+.++++ .|++|.++.|
T Consensus 4 ~~~~~y~G~-~PTg~lHlG~l~~~---~~~~~lq~-~g~~~~i~ia 44 (292)
T PF00579_consen 4 KPFRVYTGI-DPTGDLHLGHLVPI---MKLIWLQK-AGFKVIILIA 44 (292)
T ss_dssp SSEEEEEEE-ESSSS-BHHHHHHH---HHHHHHHH-TTSEEEEEEE
T ss_pred CCcEEEEeE-CCCCcccchHHHHH---HHHHHHHh-cCCccceEec
Confidence 344444442 36788999987553 23445555 7999887775
No 134
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed
Probab=57.44 E-value=17 Score=40.40 Aligned_cols=31 Identities=23% Similarity=0.335 Sum_probs=21.8
Q ss_pred CCCCcccchHHHhHHHHHHHHHHHHhCCCeeEEec
Q 003799 160 YANGNLHMGHALNKILKDIINRYKLLQNYKVRYVP 194 (794)
Q Consensus 160 y~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~ 194 (794)
-|+|.+||||..+.+.+ +.++|.. ++|.++-
T Consensus 9 ~PTG~lHLG~~~g~~~~--~~~lQ~~--~~~~~~I 39 (333)
T PRK00927 9 QPTGKLHLGNYLGAIKN--WVELQDE--YECFFCI 39 (333)
T ss_pred CCCccchHHhHHHHHHH--HHHHHhc--CCeEEEE
Confidence 37899999998877643 4456653 7776655
No 135
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=54.44 E-value=9.8 Score=47.35 Aligned_cols=62 Identities=16% Similarity=0.228 Sum_probs=46.8
Q ss_pred cchHHHHHHHHhcCCccccccc--------------ccccccccCCCCcEEEcccCccccchhhHHHHHHhhhcCe
Q 003799 505 DGNVAVVKYLDEQMSLIMEEPY--------------EHKYPYDWRTKKPTIFRATEQWFASVEGFRQAAMDAIGQV 566 (794)
Q Consensus 505 ea~~~ii~~L~~~g~l~~~~~~--------------~h~yp~~WRt~~pii~r~t~QWfi~~~~~~~~~l~~i~~v 566 (794)
+.-..+...|.++|++...... .-..++||||+.|++.+..+|||+++..+++++++.++.+
T Consensus 133 ~~v~~~f~~L~~~Gliy~~~~~v~wcp~~~t~La~~ev~~~~~~~~~~~~~~~~~~~~f~~i~~~~~~L~~~l~~~ 208 (805)
T PRK00390 133 KWTQWIFLKLYEKGLAYRKESPVNWCPVDGTVLANEQVIDGRCWRCGAPVEKKELRQWFLKITDYADELLDDLDKL 208 (805)
T ss_pred HHHHHHHHHHHHCCCEEEecCEEEecCCcCCCCCHHHhhCCeecccCCeeEEEecceeeEecchhHHHHHHHHHhh
Confidence 3445567778888877654332 1225789999999999999999999999888888776543
No 136
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=51.02 E-value=15 Score=41.52 Aligned_cols=44 Identities=23% Similarity=0.375 Sum_probs=27.0
Q ss_pred cEEEEcCCCCCCC-cccchHHHhHHHHHHHHHHHHhCCCeeEEeccccCCC
Q 003799 151 NFVLHDGPPYANG-NLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHG 200 (794)
Q Consensus 151 ~f~i~~~pPy~nG-~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G~D~hG 200 (794)
++.+..|. -|+| .||+||... +. .+.++++ .|++|.++.| |.||
T Consensus 30 ~~~vy~G~-dPTg~~lHlGh~v~-l~--~l~~lq~-~G~~~~ilig-d~ta 74 (377)
T TIGR00234 30 KIKLYVGF-DPTAPSLHLGHLVP-LL--KLRDFQQ-AGHEVIVLLG-DATA 74 (377)
T ss_pred CCEEEEee-CCCCCCccHHHHHH-HH--HHHHHHH-CCCcEEEEEe-ccch
Confidence 34444432 3788 899999774 22 2556666 5888877764 3443
No 137
>PLN02610 probable methionyl-tRNA synthetase
Probab=49.92 E-value=12 Score=46.59 Aligned_cols=42 Identities=19% Similarity=0.186 Sum_probs=36.7
Q ss_pred ccccccccccccCCCCcEEEcccCccccchhhHHHHHHhhhc
Q 003799 523 EEPYEHKYPYDWRTKKPTIFRATEQWFASVEGFRQAAMDAIG 564 (794)
Q Consensus 523 ~~~~~h~yp~~WRt~~pii~r~t~QWfi~~~~~~~~~l~~i~ 564 (794)
..+..+..|+|++|+.|++++.+++||.++..+++.+.+-++
T Consensus 180 ~~p~eLi~p~c~~~g~~~~~~~~~~~ff~Ls~~~~~L~~~~~ 221 (801)
T PLN02610 180 LNPTELIDPKCKVCKNTPRIRDTDHLFLELPLLKDKLVEYIN 221 (801)
T ss_pred CChhhhcCCcccCCCCcceEEEcceEEEEhHHHHHHHHHHHH
Confidence 344567789999999999999999999999999988888876
No 138
>PRK05912 tyrosyl-tRNA synthetase; Validated
Probab=47.98 E-value=18 Score=41.35 Aligned_cols=41 Identities=22% Similarity=0.266 Sum_probs=26.1
Q ss_pred CcEEEEcCCCCCCCc-ccchHHHhHHHHHHHHHHHHhCCCeeEEecc
Q 003799 150 ENFVLHDGPPYANGN-LHMGHALNKILKDIINRYKLLQNYKVRYVPG 195 (794)
Q Consensus 150 ~~f~i~~~pPy~nG~-lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G 195 (794)
+++.+..|. -|+|+ ||+||... + ..+.++|+ .|+++.++.|
T Consensus 32 ~~~~vy~G~-dPTg~slHlGhlv~-l--~~l~~lQ~-~G~~~~~lig 73 (408)
T PRK05912 32 EPLRIYLGF-DPTAPSLHLGHLVP-L--LKLRRFQD-AGHKPIALIG 73 (408)
T ss_pred CCCEEEEee-cCCCCCccHHhHHH-H--HHHHHHHH-CCCcEEEEEc
Confidence 445555543 46785 99999873 2 34555555 5888776664
No 139
>KOG0435 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=46.97 E-value=8.1 Score=45.78 Aligned_cols=36 Identities=17% Similarity=0.437 Sum_probs=32.4
Q ss_pred cccccCCCCcEEEcccCccccchhhHHHHHHhhhcC
Q 003799 530 YPYDWRTKKPTIFRATEQWFASVEGFRQAAMDAIGQ 565 (794)
Q Consensus 530 yp~~WRt~~pii~r~t~QWfi~~~~~~~~~l~~i~~ 565 (794)
....||+|.+++-....|||+.+....+++++.++.
T Consensus 198 ~G~SWRSGA~VEkK~LrQWfikttaYAk~L~d~L~~ 233 (876)
T KOG0435|consen 198 DGCSWRSGAKVEKKKLRQWFIKTTAYAKRLLDGLET 233 (876)
T ss_pred cCccccccchhhHHHHHHHHhhhhHHHHHHHHHHHh
Confidence 456699999999999999999999999999998884
No 140
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=46.20 E-value=38 Score=38.74 Aligned_cols=43 Identities=23% Similarity=0.400 Sum_probs=26.3
Q ss_pred CCcEEEEcCCCCCCC-cccchHHHhHHHHHHHHHHHHhCCCeeEEeccc
Q 003799 149 GENFVLHDGPPYANG-NLHMGHALNKILKDIINRYKLLQNYKVRYVPGW 196 (794)
Q Consensus 149 ~~~f~i~~~pPy~nG-~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G~ 196 (794)
++++.+..|. -|+| .||+||+.. +.+ +.+++ ..|+++.++.|=
T Consensus 31 ~~~~~iy~G~-dPT~~sLHlGhlv~-l~~--l~~lq-~~G~~~~~ligd 74 (410)
T PRK13354 31 GKPLTLYLGF-DPTAPSLHIGHLVP-LMK--LKRFQ-DAGHRPVILIGG 74 (410)
T ss_pred CCCcEEEEcc-cCCCCCcchhhHHH-HHH--HHHHH-HcCCeEEEEEcc
Confidence 3455566543 4677 599999444 332 44444 468887777653
No 141
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=45.24 E-value=17 Score=39.78 Aligned_cols=52 Identities=27% Similarity=0.408 Sum_probs=39.7
Q ss_pred cchHHHHHHHHhcCCcccccccccccccccCCCCcEEEcccCccccchhhHHHHHHhhhcCeeecCC
Q 003799 505 DGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTKKPTIFRATEQWFASVEGFRQAAMDAIGQVKWVPP 571 (794)
Q Consensus 505 ea~~~ii~~L~~~g~l~~~~~~~h~yp~~WRt~~pii~r~t~QWfi~~~~~~~~~l~~i~~v~~~P~ 571 (794)
+.-..+++.|.++|.+...+. |+ +.++|||+++..+++++++.++.+.|.|+
T Consensus 114 ~~v~~~f~~L~~~G~iY~~~~-------------~v--~~~~~~f~~~~~l~~~~~~~~~~~~~~p~ 165 (312)
T cd00668 114 KAVELIFSRLYEKGLIYRGTH-------------PV--RITEQWFFDMPKFKEKLLKALRRGKIVPE 165 (312)
T ss_pred HHHHHHHHHHHHCCCEEeecc-------------ee--EeeeeEEEEcHHHHHHHHHHHhcCCcCCh
Confidence 344567888888886654332 11 68999999999999999999987777775
No 142
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=42.10 E-value=62 Score=35.53 Aligned_cols=43 Identities=30% Similarity=0.461 Sum_probs=27.3
Q ss_pred cEEEEcCCCCCCCcccchHHHhHHHHHHHHHHHHhCCC-eeEEeccccCC
Q 003799 151 NFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNY-KVRYVPGWDCH 199 (794)
Q Consensus 151 ~f~i~~~pPy~nG~lHiGHa~~~il~Dii~R~~r~~G~-~V~~~~G~D~h 199 (794)
++.+.+| --|+|.|||||..+.+. .+++...++ +++++- .|-|
T Consensus 5 ~~~vlSG-~~PSG~lHLGny~ga~~----~~v~~q~~~~~~f~~I-aDlh 48 (314)
T COG0180 5 KFRVLSG-IQPSGKLHLGNYLGAIR----NWVLLQEEYYECFFFI-ADLH 48 (314)
T ss_pred CceEEec-CCCCCCcchhHhHHHHH----HHHHHhcccCceEEEE-ecHH
Confidence 4444444 34689999999987654 356666664 776655 4444
No 143
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases. Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=41.73 E-value=19 Score=39.57 Aligned_cols=55 Identities=13% Similarity=0.175 Sum_probs=39.8
Q ss_pred cchHHHHHHHHhcCCcccccccccccccccCCCCcEEEcccCccccch--hhHHHHHHhhhcCeeecCC
Q 003799 505 DGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTKKPTIFRATEQWFASV--EGFRQAAMDAIGQVKWVPP 571 (794)
Q Consensus 505 ea~~~ii~~L~~~g~l~~~~~~~h~yp~~WRt~~pii~r~t~QWfi~~--~~~~~~~l~~i~~v~~~P~ 571 (794)
+.-..+...|.++|.+...+. ...+| +.++|||+++ +.+++++.+.++...+.|+
T Consensus 101 ~~v~~~f~~L~~~G~iy~~~~---~v~~~---------~~~~~~f~~l~~~~~~~~l~~~l~~~~~~p~ 157 (314)
T cd00812 101 KFTQWLFLKLYEKGLAYKKEA---PVNWC---------KLLDQWFLKYSETEWKEKLLKDLEKLDGWPE 157 (314)
T ss_pred HHHHHHHHHHHHCCCEEecCc---eeeee---------CccceEEEEcCcHHHHHHHHHHHHhcCcCCH
Confidence 334456678989987665432 22233 7899999999 8999999999987665565
No 144
>COG1656 Uncharacterized conserved protein [Function unknown]
Probab=38.99 E-value=58 Score=32.20 Aligned_cols=89 Identities=19% Similarity=0.239 Sum_probs=47.1
Q ss_pred HHHHHHhCCCeeEEec-cccCCCchHHHHHHhhchhhhhcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCCcc
Q 003799 179 INRYKLLQNYKVRYVP-GWDCHGLPIELKVLQSLDEDAKKDLTP-SKLRAKAAKFAKATVKAQMASFKRYGVWADWNNPY 256 (794)
Q Consensus 179 i~R~~r~~G~~V~~~~-G~D~hGlpie~~~~k~~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~~~lGi~~dwd~~~ 256 (794)
+|||.|+.||++.|.- +-|. .|...+.++. +--++. .++ +++ . ++|+ +.+
T Consensus 18 LARwLRllGydt~~~~~~~d~---~i~~i~~~e~----rIllTRDr~L--------------~~r-~-k~g~-----~~i 69 (165)
T COG1656 18 LARWLRLLGYDTVYSSNESDD---EIILIAKKEG----RILLTRDREL--------------YKR-A-KLGI-----KAI 69 (165)
T ss_pred HHHHHHHcCCceeeeccCCcH---HHHHHHhcCC----eEEEeccHHH--------------HHH-h-hccC-----ceE
Confidence 6899999999999985 4443 2222222110 000111 111 111 1 4565 233
Q ss_pred ccCChHHHHHHHHHHHHHHHcCCeeecccCceeccCCCcccc
Q 003799 257 LTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALA 298 (794)
Q Consensus 257 ~T~d~~~~~~v~~~f~~L~~kGlIy~~~~~v~w~~~~~t~La 298 (794)
.-.+...++.+.+++.++-.++-+. -...=||.|++.|.
T Consensus 70 ~i~~~s~~~Ql~e~~~~~~l~~~~~---~e~~RCp~CN~~L~ 108 (165)
T COG1656 70 LIRSDSIEEQLAEFLARLGLKPRLF---PEFSRCPECNGELE 108 (165)
T ss_pred EEeCCCHHHHHHHHHHHhccchhcc---cccccCcccCCEec
Confidence 3334456677777777666555211 12456999998765
No 145
>TIGR00233 trpS tryptophanyl-tRNA synthetase. This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model.
Probab=38.79 E-value=24 Score=39.04 Aligned_cols=32 Identities=19% Similarity=0.320 Sum_probs=22.6
Q ss_pred CCCCcccchHHHhHHHHHHHHHHHHhCCCeeEEecc
Q 003799 160 YANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPG 195 (794)
Q Consensus 160 y~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G 195 (794)
-|+|.+||||..+.+.. ++....|++|.+..+
T Consensus 10 ~PTG~~HlG~~l~~~~~----~~~~q~~~~~~i~Ia 41 (328)
T TIGR00233 10 QPSGKMHLGHYLGAIQT----KWLQQFGVELFICIA 41 (328)
T ss_pred CCCcHhHHHHHHHHHHH----HHHHhCCCCEEEEee
Confidence 47799999998776553 333356888877664
No 146
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed
Probab=36.75 E-value=90 Score=35.46 Aligned_cols=87 Identities=20% Similarity=0.273 Sum_probs=44.8
Q ss_pred CCCCcccchHHHhHHHHHHHHHHHHh-CCCeeEEeccccCCCchHHHHHHhhchhhhhcCCCHHHHHHHHHHHHHHHHHH
Q 003799 160 YANGNLHMGHALNKILKDIINRYKLL-QNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKAAKFAKATVKA 238 (794)
Q Consensus 160 y~nG~lHiGHa~~~il~Dii~R~~r~-~G~~V~~~~G~D~hGlpie~~~~k~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 238 (794)
-|+|.+||||.++.+ + .|..+ .|+++.+.. -|-|-+ . -...+++++++. + ..
T Consensus 10 qPSG~~HLGnylG~i-k----~wv~lq~~~~~~~~I-ADlHAl------t-------~~~~d~~~ir~~----~----~~ 62 (398)
T PRK12283 10 RPTGRLHLGHYHGVL-K----NWVKLQHEYECFFFV-ADWHAL------T-------THYETPEVIEKN----V----WD 62 (398)
T ss_pred CCCCcchHHHHHHHH-H----HHHHHhcCCcEEEEe-ecHHHH------h-------CCCCCHHHHHHH----H----HH
Confidence 378999999988843 3 44433 477765554 333311 1 011256666433 2 33
Q ss_pred HHHHHHHcCCccCCCCccccC-ChHHHHHHHHHHHHH
Q 003799 239 QMASFKRYGVWADWNNPYLTL-DPEYEAAQIEVFGQM 274 (794)
Q Consensus 239 ~~~~~~~lGi~~dwd~~~~T~-d~~~~~~v~~~f~~L 274 (794)
...++..+|+..+=...|.-. -|+|.+ .-|++...
T Consensus 63 ~~a~~lA~GlDP~k~~if~QS~v~eh~e-L~wil~~~ 98 (398)
T PRK12283 63 MVIDWLAAGVDPAQATLFIQSKVPEHAE-LHLLLSMI 98 (398)
T ss_pred HHHHHHHcCCCccceEEEECCCchHHHH-HHHHHHhh
Confidence 466677999943323334333 344433 23444433
No 147
>PTZ00126 tyrosyl-tRNA synthetase; Provisional
Probab=34.77 E-value=34 Score=38.75 Aligned_cols=42 Identities=17% Similarity=0.211 Sum_probs=22.6
Q ss_pred CcEEEEcCCCCCCCcccchHHHhHHHHHHHHHHHHhCCCeeEEecc
Q 003799 150 ENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPG 195 (794)
Q Consensus 150 ~~f~i~~~pPy~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G 195 (794)
+++.+..| -=|+|.+||||..-.. --+.+++. .|++|.+..|
T Consensus 65 ~~~~v~~G-~~PTG~lHLG~g~i~~--~~~~~lq~-~G~~v~~~Ia 106 (383)
T PTZ00126 65 ERPICYDG-FEPSGRMHIAQGILKA--INVNKLTK-AGCVFVFWVA 106 (383)
T ss_pred CCCEEEEE-ECCCCcccccchHhHh--HHHHHHHh-CCCeEEEEEc
Confidence 34444443 2378899999932111 12333443 3888776653
No 148
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed
Probab=32.39 E-value=1.2e+02 Score=33.77 Aligned_cols=16 Identities=31% Similarity=0.733 Sum_probs=13.2
Q ss_pred CCCcccchHHHhHHHH
Q 003799 161 ANGNLHMGHALNKILK 176 (794)
Q Consensus 161 ~nG~lHiGHa~~~il~ 176 (794)
|+|.+||||..+.+..
T Consensus 11 PTG~~HLGn~l~~~~~ 26 (333)
T PRK12282 11 PTGKLHLGHYVGSLKN 26 (333)
T ss_pred CCCcchHHHHHHHHHH
Confidence 5799999998886664
No 149
>cd07955 Anticodon_Ia_Cys_like Anticodon-binding domain of cysteinyl tRNA synthetases and domain found in MshC. This domain is found in cysteinyl tRNA synthetases (CysRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. CysRS catalyzes the transfer of cysteine to the 3'-end of its tRNA. The family also includes a domain of MshC, the rate-determining enzyme in the mycothiol biosynthetic pathway, which is specific to actinomycetes. The anticodon-binding site of CysRS lies C-terminal to this model's footprint and is not shared by MshC.
Probab=30.20 E-value=1.6e+02 Score=25.38 Aligned_cols=53 Identities=17% Similarity=0.252 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhcccCCCCCCCcCCCCCChhhHHHHHHHHHHHHHHHHHHh-cccHHHHHHHHHHHHH
Q 003799 600 QVLRQMSDIYRKLRGTLRYLLGNLHDWRVGNSISYDDLPMIDQYALFQLENIVKNIRESYE-SYQFFKIFQIIQRFII 676 (794)
Q Consensus 600 ~~l~~~~~~~~kl~Nt~rfll~nl~~~~~~~~~~~~~l~~~D~~il~~l~~lv~~v~~~~e-~y~f~~ai~~l~~f~~ 676 (794)
+.++++.+.+++|+++++.+. . . ....+.+++.++|+ +++...|+..|++++.
T Consensus 2 e~L~~A~~~l~rl~~~l~~~~------------~----~--------~~~~~~~~F~~AL~DDLNTp~Ala~L~~l~k 55 (81)
T cd07955 2 EVLADAEARLARWRSAVALPD------------G----P--------DAEALVARLREALADDLDTPKALAALDAWAR 55 (81)
T ss_pred hHHHHHHHHHHHHHHHHHhcc------------c----c--------cHHHHHHHHHHHHHhhCChHHHHHHHHHHHH
Confidence 568888899999998875421 0 0 12345688888985 7999999999998875
No 150
>KOG2145 consensus Cytoplasmic tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=29.99 E-value=49 Score=35.56 Aligned_cols=27 Identities=30% Similarity=0.546 Sum_probs=21.7
Q ss_pred CCCcEEEEcCCCCCCCcccchHHHhHH
Q 003799 148 DGENFVLHDGPPYANGNLHMGHALNKI 174 (794)
Q Consensus 148 ~~~~f~i~~~pPy~nG~lHiGHa~~~i 174 (794)
.+++|++.+|---.++.+|+||..-.+
T Consensus 82 q~kpFyLYTGRGpSS~smHlGHliPFi 108 (397)
T KOG2145|consen 82 QGKPFYLYTGRGPSSESMHLGHLIPFI 108 (397)
T ss_pred cCCceEEEeCCCCCccccccccchhHH
Confidence 467899999877778999999975544
No 151
>KOG3326 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.49 E-value=2.2e+02 Score=27.54 Aligned_cols=62 Identities=19% Similarity=0.341 Sum_probs=34.3
Q ss_pred cCCCchHHHHHHhhchhhhhcCCCHHHHHHHHHHHHHHHH----HHHHHHHHHc--CCccCCCCccccCC
Q 003799 197 DCHGLPIELKVLQSLDEDAKKDLTPSKLRAKAAKFAKATV----KAQMASFKRY--GVWADWNNPYLTLD 260 (794)
Q Consensus 197 D~hGlpie~~~~k~~~~~~~~~~~~~~~~~~~~~~a~~~~----~~~~~~~~~l--Gi~~dwd~~~~T~d 260 (794)
+-.+-|+|.+-.+.+-...+.|+---.+ .-..||++++ +.+.+.+..| |.+.|||.+|+-++
T Consensus 50 ~r~~e~~etkraRLlYqSrKRGiLEnDL--LLs~Fa~~~l~~m~e~~l~~YD~LiN~~~~dWDi~YWaTe 117 (154)
T KOG3326|consen 50 KRPNEPLETKRARLLYQSRKRGILENDL--LLSNFAAKNLKKMSEEQLKEYDQLINEESNDWDIYYWATE 117 (154)
T ss_pred CCCCchhHHHHHHHHHHHhhcchhHHHH--HHHHHHHHHHHhCCHHHHHHHHHHhcCCcCCchhhhhhcc
Confidence 4456677776554443333444311111 1133455554 4556666665 77889999997664
No 152
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=25.39 E-value=69 Score=36.47 Aligned_cols=31 Identities=23% Similarity=0.348 Sum_probs=21.0
Q ss_pred CCC-cccchHHHhHHHHHHHHHHHHhCCCeeEEecc
Q 003799 161 ANG-NLHMGHALNKILKDIINRYKLLQNYKVRYVPG 195 (794)
Q Consensus 161 ~nG-~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G 195 (794)
|+| .|||||...- -.+.|+| ..|++|....|
T Consensus 41 PTa~slHlGhlv~l---~kL~~fQ-~aGh~~ivLig 72 (401)
T COG0162 41 PTAPSLHLGHLVPL---MKLRRFQ-DAGHKPIVLIG 72 (401)
T ss_pred CCCCccchhhHHHH---HHHHHHH-HCCCeEEEEec
Confidence 678 8999997542 2243444 45899887776
No 153
>COG1998 RPS31 Ribosomal protein S27AE [Translation, ribosomal structure and biogenesis]
Probab=25.17 E-value=44 Score=26.21 Aligned_cols=28 Identities=14% Similarity=0.375 Sum_probs=22.1
Q ss_pred eeccCCC--ccccccccccCCcccccccceeEE
Q 003799 288 HWSPSSR--TALAEAELEYPEGHVSRSIYAVFR 318 (794)
Q Consensus 288 ~w~~~~~--t~Lae~Evey~e~~~~~~~~v~F~ 318 (794)
..||+|+ +++|++-=-+ .|.+|.|..|+
T Consensus 20 ~~CPrCG~gvfmA~H~dR~---~CGkCgyTe~~ 49 (51)
T COG1998 20 RFCPRCGPGVFMADHKDRW---ACGKCGYTEFK 49 (51)
T ss_pred ccCCCCCCcchhhhcCcee---EeccccceEee
Confidence 4799999 9999986543 68888887764
No 154
>PF04918 DltD_M: DltD central region; InterPro: IPR007002 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the central region of DltD.; PDB: 3BMA_C.
Probab=23.11 E-value=2.4e+02 Score=27.80 Aligned_cols=24 Identities=29% Similarity=0.663 Sum_probs=11.6
Q ss_pred CCCcEEEcccCccccchhhHHHHHH
Q 003799 536 TKKPTIFRATEQWFASVEGFRQAAM 560 (794)
Q Consensus 536 t~~pii~r~t~QWfi~~~~~~~~~l 560 (794)
.++-++|.++||||.. .++...+.
T Consensus 23 k~KK~V~iiSPQWF~k-~G~~~~aF 46 (163)
T PF04918_consen 23 KNKKAVFIISPQWFTK-KGVDPDAF 46 (163)
T ss_dssp TT-EEEEE--GGG--T-T-S-HHHH
T ss_pred cCCcEEEEECCcccCC-CCcCHHHH
Confidence 4678999999999995 34334333
No 155
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=22.98 E-value=44 Score=42.95 Aligned_cols=35 Identities=26% Similarity=0.108 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHcCCeeec---ccCceeccCCCccc
Q 003799 263 YEAAQIEVFGQMSLQGYIYRG---KKPVHWSPSSRTAL 297 (794)
Q Consensus 263 ~~~~v~~~f~~L~~kGlIy~~---~~~v~w~~~~~t~L 297 (794)
..++-..++..|.++|++.+. .+.+.+|-+|++++
T Consensus 330 ~~ear~~Ii~~L~~~g~l~~~~~~~h~~~~c~R~~~~i 367 (1052)
T PRK14900 330 RFEARKEVKRLLAEQGLDRGAKPHVLPLGRCQRSATIL 367 (1052)
T ss_pred HHHHHHHHHHHHHhCCCeecceeeeccCceeCCCCceE
Confidence 345567788999999998774 35678899998874
No 156
>PLN02517 phosphatidylcholine-sterol O-acyltransferase
Probab=20.74 E-value=91 Score=37.23 Aligned_cols=72 Identities=14% Similarity=0.111 Sum_probs=51.8
Q ss_pred HHHHHHHHhcCCcccccccccccccccCCCCcEEEcccCccccchhhHHHHHHhhh--cCeeecCCCCCCCCCCchhhhh
Q 003799 508 VAVVKYLDEQMSLIMEEPYEHKYPYDWRTKKPTIFRATEQWFASVEGFRQAAMDAI--GQVKWVPPQEAPGYGADVLRLW 585 (794)
Q Consensus 508 ~~ii~~L~~~g~l~~~~~~~h~yp~~WRt~~pii~r~t~QWfi~~~~~~~~~l~~i--~~v~~~P~~~~~~yGaD~lRl~ 585 (794)
..+++.|.+.|.- . .--+.-|||||-. |.....-++||.+++.+-+.+.+.. ++|..+.. -+|.-++.+|
T Consensus 159 ~kLIe~L~~iGY~-~--~nL~gAPYDWRls-~~~le~rd~YF~rLK~lIE~ay~~nggkKVVLV~H----SMGglv~lyF 230 (642)
T PLN02517 159 AVLIANLARIGYE-E--KNMYMAAYDWRLS-FQNTEVRDQTLSRLKSNIELMVATNGGKKVVVVPH----SMGVLYFLHF 230 (642)
T ss_pred HHHHHHHHHcCCC-C--CceeecccccccC-ccchhhhhHHHHHHHHHHHHHHHHcCCCeEEEEEe----CCchHHHHHH
Confidence 5789999998875 3 3346789999933 2222344899999988888887766 36777665 5888888777
Q ss_pred hh
Q 003799 586 VS 587 (794)
Q Consensus 586 la 587 (794)
|.
T Consensus 231 L~ 232 (642)
T PLN02517 231 MK 232 (642)
T ss_pred HH
Confidence 65
Done!