Query 003799
Match_columns 794
No_of_seqs 373 out of 2501
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 04:25:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003799.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003799hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ffy_A Isoleucyl-tRNA syntheta 100.0 1E-134 4E-139 1230.9 35.0 638 105-790 2-816 (917)
2 1gax_A Valrs, valyl-tRNA synth 100.0 2E-117 7E-122 1071.3 49.5 573 117-792 3-739 (862)
3 1ile_A Ilers, isoleucyl-tRNA s 100.0 4E-118 1E-122 1082.2 40.0 625 119-791 6-821 (821)
4 1wz2_A Leucyl-tRNA synthetase; 100.0 2E-109 8E-114 1018.1 51.1 606 120-791 3-855 (967)
5 1wkb_A Leucyl-tRNA synthetase; 100.0 1E-98 3E-103 913.3 44.2 562 119-735 2-810 (810)
6 2v0c_A Aminoacyl-tRNA syntheta 100.0 2.4E-96 8E-101 891.2 33.2 592 119-792 2-837 (878)
7 4arc_A Leucine--tRNA ligase; l 100.0 1.6E-94 5.5E-99 868.7 38.1 562 118-763 22-816 (880)
8 3u1f_A Methionyl-tRNA syntheta 100.0 9.3E-65 3.2E-69 591.1 18.2 472 148-737 7-500 (542)
9 1rqg_A Methionyl-tRNA syntheta 100.0 2.6E-58 9E-63 549.8 26.6 484 150-737 2-522 (722)
10 3kfl_A Methionyl-tRNA syntheta 100.0 1.8E-56 6.2E-61 521.8 16.8 475 138-737 15-516 (564)
11 4dlp_A Aminoacyl-tRNA syntheta 100.0 6.2E-56 2.1E-60 515.3 16.1 457 148-737 23-499 (536)
12 3h99_A Methionyl-tRNA syntheta 100.0 9.7E-56 3.3E-60 516.3 15.0 479 146-736 14-521 (560)
13 2csx_A Methionyl-tRNA syntheta 100.0 7.2E-56 2.5E-60 510.8 12.4 452 149-737 4-469 (497)
14 2x1l_A Methionyl-tRNA syntheta 100.0 4.2E-55 1.4E-59 507.5 17.4 461 148-737 10-492 (524)
15 2d5b_A Methionyl-tRNA syntheta 100.0 2.2E-54 7.4E-59 499.0 11.9 454 150-737 3-470 (500)
16 1wny_A Isoleucyl-tRNA syntheta 100.0 7.1E-39 2.4E-43 321.0 12.8 182 309-529 2-186 (186)
17 3o0a_A Leucyl-tRNA synthetase 100.0 1.1E-34 3.6E-39 296.8 3.2 169 337-527 38-218 (219)
18 1wka_A Valyl-tRNA synthetase; 100.0 2.9E-33 1E-37 269.3 11.6 140 309-526 3-146 (147)
19 2wfg_A Cytosolic leucyl-tRNA s 100.0 2.4E-33 8.2E-38 294.4 8.8 170 336-532 32-258 (261)
20 2ajg_A Leucyl-tRNA synthetase; 100.0 1.6E-32 5.5E-37 277.1 7.3 168 309-522 9-194 (196)
21 3tqo_A Cysteinyl-tRNA syntheta 100.0 6.8E-31 2.3E-35 295.5 19.7 128 150-294 24-152 (462)
22 2wfd_A Leucyl-tRNA synthetase, 100.0 2E-31 6.8E-36 278.9 12.9 179 313-522 8-249 (252)
23 3pz6_A Leurs, leucyl-tRNA synt 100.0 1.5E-30 5.2E-35 272.1 10.8 158 336-521 79-302 (311)
24 3sp1_A Cysteinyl-tRNA syntheta 100.0 3.7E-30 1.3E-34 290.7 13.3 123 154-293 45-177 (501)
25 3c8z_A Cysteinyl-tRNA syntheta 100.0 4.4E-29 1.5E-33 280.3 20.1 119 157-292 45-167 (414)
26 1li5_A Cysrs, cysteinyl-tRNA s 99.9 2.3E-27 7.9E-32 269.3 19.2 125 150-294 23-149 (461)
27 1iq0_A Arginyl-tRNA synthetase 99.8 3.7E-21 1.3E-25 225.0 13.6 147 151-299 104-284 (592)
28 2zue_A Arginyl-tRNA synthetase 99.8 2.9E-19 1E-23 209.7 17.5 149 149-299 118-314 (629)
29 3fnr_A Arginyl-tRNA synthetase 99.8 8.2E-19 2.8E-23 198.3 20.5 124 558-686 285-417 (464)
30 1irx_A Lysyl-tRNA synthetase; 99.7 1.2E-17 4.1E-22 192.9 5.1 124 150-281 20-151 (523)
31 1f7u_A Arginyl-tRNA synthetase 99.2 5.1E-11 1.7E-15 139.0 13.3 138 149-290 142-325 (607)
32 1nzj_A Hypothetical protein YA 98.3 7.2E-07 2.5E-11 95.1 6.4 89 158-282 11-100 (298)
33 3aii_A Glutamyl-tRNA synthetas 98.2 1E-06 3.6E-11 100.4 6.4 92 155-282 99-190 (553)
34 1qtq_A GLNRS, protein (glutami 98.2 2E-06 6.9E-11 98.1 8.3 92 155-282 29-121 (553)
35 2o5r_A Glutamyl-tRNA synthetas 98.1 3.9E-06 1.3E-10 95.2 7.6 96 151-282 12-116 (481)
36 3al0_C Glutamyl-tRNA(Gln) amid 98.0 5.3E-06 1.8E-10 96.2 8.0 96 150-282 128-232 (592)
37 2hz7_A Glutaminyl-tRNA synthet 98.0 5E-06 1.7E-10 98.8 7.6 90 157-282 71-161 (851)
38 4g6z_A Glutamate-tRNA ligase; 98.0 8.1E-06 2.8E-10 92.2 8.1 89 158-282 31-120 (490)
39 2cfo_A Glutamyl-tRNA synthetas 97.9 6.5E-06 2.2E-10 93.5 5.8 89 158-282 7-96 (492)
40 3afh_A Glutamyl-tRNA synthetas 97.8 2.7E-05 9.4E-10 88.3 8.0 90 157-282 30-128 (488)
41 1j09_A Glutamyl-tRNA synthetas 97.8 2E-05 6.8E-10 89.0 6.4 89 158-282 7-104 (468)
42 4gri_A Glutamate--tRNA ligase; 97.8 2.7E-05 9.1E-10 89.2 7.4 91 158-282 30-127 (512)
43 2ja2_A Glutamyl-tRNA synthetas 97.7 3.8E-05 1.3E-09 87.2 7.8 89 158-282 12-109 (498)
44 1rqg_A Methionyl-tRNA syntheta 95.3 0.0059 2E-07 72.8 2.5 42 527-568 167-208 (722)
45 3u1f_A Methionyl-tRNA syntheta 93.8 0.027 9.1E-07 64.9 3.3 60 505-564 108-190 (542)
46 2d5b_A Methionyl-tRNA syntheta 93.6 0.036 1.2E-06 63.1 3.8 61 505-565 102-176 (500)
47 2csx_A Methionyl-tRNA syntheta 90.4 0.092 3.2E-06 59.7 2.1 61 505-565 104-179 (497)
48 3tzl_A Tryptophanyl-tRNA synth 88.5 0.25 8.7E-06 52.9 3.6 65 161-254 12-76 (322)
49 2cyb_A Tyrosyl-tRNA synthetase 88.4 0.95 3.2E-05 48.4 8.1 77 150-255 31-107 (323)
50 2x1l_A Methionyl-tRNA syntheta 88.1 0.24 8.1E-06 56.7 3.3 60 505-564 111-189 (524)
51 2cya_A Tyrosyl-tRNA synthetase 87.1 0.6 2.1E-05 50.8 5.6 78 151-255 35-112 (364)
52 1i6k_A TRPRS, tryptophanyl-tRN 86.5 0.63 2.1E-05 49.9 5.3 66 161-255 10-75 (328)
53 1f7u_A Arginyl-tRNA synthetase 86.0 1.2 4.2E-05 51.7 7.7 135 576-720 452-600 (607)
54 4dlp_A Aminoacyl-tRNA syntheta 85.5 0.4 1.4E-05 55.0 3.4 61 505-565 124-202 (536)
55 2dlc_X Tyrosyl-tRNA synthetase 84.9 3.4 0.00012 45.3 10.3 83 149-255 37-119 (394)
56 2pid_A Tyrosyl-tRNA synthetase 82.2 1.2 4.1E-05 48.3 5.2 67 152-228 47-114 (356)
57 3h99_A Methionyl-tRNA syntheta 81.3 0.91 3.1E-05 52.3 4.0 37 529-565 184-220 (560)
58 3jxe_A Tryptophanyl-tRNA synth 80.8 1.9 6.6E-05 47.2 6.2 79 149-254 71-149 (392)
59 2zp1_A Tyrosyl-tRNA synthetase 80.7 2.8 9.7E-05 44.5 7.4 72 150-248 27-98 (314)
60 1n3l_A Tyrosyl-tRNA synthetase 80.2 3 0.0001 45.4 7.5 39 152-195 36-74 (372)
61 2cyc_A Tyrosyl-tRNA synthetase 77.7 3.5 0.00012 44.9 7.1 69 161-248 42-111 (375)
62 2yy5_A Tryptophanyl-tRNA synth 75.7 2 6.9E-05 46.3 4.4 65 161-254 13-77 (348)
63 2el7_A Tryptophanyl-tRNA synth 75.7 4.7 0.00016 43.2 7.3 69 161-255 10-79 (337)
64 3hzr_A Tryptophanyl-tRNA synth 75.2 6.2 0.00021 43.1 8.2 74 149-248 80-153 (386)
65 1yi8_B Tryptophanyl-tRNA synth 74.4 3.5 0.00012 44.5 5.9 66 162-255 32-97 (351)
66 3a04_A Tryptophanyl-tRNA synth 72.4 7.2 0.00025 42.4 7.8 42 149-195 68-109 (372)
67 3prh_A Tryptophanyl-tRNA synth 71.7 2.6 8.9E-05 46.1 4.1 71 154-254 38-108 (388)
68 3sz3_A Tryptophanyl-tRNA synth 69.8 2.7 9.1E-05 45.2 3.6 65 161-254 15-79 (341)
69 2j5b_A Tyrosyl-tRNA synthetase 69.5 3.3 0.00011 44.6 4.3 42 150-195 39-80 (348)
70 3hv0_A Tryptophanyl-tRNA synth 68.0 15 0.00053 40.1 9.2 80 149-255 72-152 (393)
71 1jil_A Tyrrs, tyrosyl-tRNA syn 67.8 3.9 0.00013 45.2 4.5 69 161-246 41-110 (420)
72 3p0j_A Tyrosyl-tRNA synthetase 65.9 6.6 0.00022 46.2 6.1 46 150-201 39-85 (690)
73 3n9i_A Tryptophanyl-tRNA synth 64.1 4 0.00014 43.9 3.5 66 160-254 23-88 (346)
74 4arc_A Leucine--tRNA ligase; l 63.4 3 0.0001 50.5 2.7 62 505-566 154-229 (880)
75 1y42_X Tyrosyl-tRNA synthetase 62.2 5.1 0.00018 43.8 4.0 31 161-195 73-104 (392)
76 2g36_A Tryptophanyl-tRNA synth 62.0 5.4 0.00018 42.8 4.1 38 152-194 14-51 (340)
77 2yxn_A Tyrosyl-tRNA synthetase 60.1 5.9 0.0002 42.2 3.9 31 161-195 42-73 (322)
78 2ts1_A Tyrosyl-tRNA synthetase 59.5 5.7 0.0002 43.8 3.8 31 161-195 39-70 (419)
79 1h3f_A Tyrosyl-tRNA synthetase 59.4 11 0.00038 41.7 6.2 46 150-201 36-82 (432)
80 1r6u_A Tryptophanyl-tRNA synth 57.2 24 0.00082 39.1 8.3 43 149-195 106-149 (437)
81 2jan_A Tyrosyl-tRNA synthetase 56.4 6.9 0.00024 43.3 3.8 31 161-195 41-72 (432)
82 1r6t_A Tryptophanyl-tRNA synth 53.7 27 0.00093 39.1 8.1 43 149-195 153-196 (477)
83 3i05_A Tryptophanyl-tRNA synth 53.6 17 0.00057 39.8 6.2 74 149-248 76-150 (395)
84 3foc_A Tryptophanyl-tRNA synth 52.3 31 0.001 38.3 8.1 76 149-248 89-164 (451)
85 3vgj_A Tyrosyl-tRNA synthetase 52.1 10 0.00034 41.2 4.2 31 161-195 65-96 (373)
86 3tze_A Tryptophanyl-tRNA synth 49.0 25 0.00084 38.6 6.6 74 149-248 99-173 (406)
87 2v0c_A Aminoacyl-tRNA syntheta 48.8 11 0.00036 45.8 4.0 63 505-567 134-211 (878)
88 2ip1_A Tryptophanyl-tRNA synth 48.4 10 0.00035 42.0 3.5 43 149-195 100-143 (432)
89 3kp1_E D-ornithine aminomutase 46.1 18 0.00061 32.4 4.0 73 216-302 14-99 (121)
90 3kfl_A Methionyl-tRNA syntheta 46.0 11 0.00037 43.3 3.4 60 505-564 125-207 (564)
91 3p0j_A Tyrosyl-tRNA synthetase 39.3 72 0.0025 37.4 9.0 66 161-248 390-456 (690)
92 1qbj_A Protein (double-strande 24.4 63 0.0022 26.8 3.7 29 265-293 42-71 (81)
No 1
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=100.00 E-value=1.3e-134 Score=1230.87 Aligned_cols=638 Identities=44% Similarity=0.764 Sum_probs=585.3
Q ss_pred cccccccCCCccCCCCCCcccccHHHHHHHhhcCcchhccc-cCCCCcEEEEcCCCCCCCcccchHHHhHHHHHHHHHHH
Q 003799 105 RYKHTVDLPKTTFGMRANALVREPEIHKLWDDHQVFLRVAD-KNDGENFVLHDGPPYANGNLHMGHALNKILKDIINRYK 183 (794)
Q Consensus 105 ~~~~t~~lp~t~f~~r~n~~~~E~~~~~~W~~~~~~~~~~~-~~~~~~f~i~~~pPy~nG~lHiGHa~~~il~Dii~R~~ 183 (794)
+||+|||||+|.||||+|+..+|++||++|+++++|++..+ +.++++|+|++|||||||.||||||+|++++|+++||+
T Consensus 2 ~y~~tl~lp~t~fpm~~~~~~~E~~~~~~W~~~~~f~~~~~~~~~~~~f~i~~~pPY~nG~lHiGHa~n~~~~Dii~Ry~ 81 (917)
T 1ffy_A 2 DYEKTLLMPKTDFPMRGGLPNKEPQIQEKWDAEDQYHKALEKNKGNETFILHDGPPYANGNLHMGHALNKILKDFIVRYK 81 (917)
T ss_dssp CSGGGSCCCCCCCCSSCCHHHHHHHHHHHHHHTTHHHHHHHHTTTSCBCCEECCCCBSSSCCCHHHHHHHHHHHHHHHHH
T ss_pred chhhhhcCCCCCCCCCCChHHHhHHHHHHHHHCCCcccchhhccCCCceeeCCCCCCCCCcchHHHHHHHHHHHHHHHHH
Confidence 59999999999999999999999999999999999998753 34688999999999999999999999999999999999
Q ss_pred HhCCCeeEEeccccCCCchHHHHHHhhchhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCCccccCChHH
Q 003799 184 LLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKAAKFAKATVKAQMASFKRYGVWADWNNPYLTLDPEY 263 (794)
Q Consensus 184 r~~G~~V~~~~G~D~hGlpie~~~~k~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~lGi~~dwd~~~~T~d~~~ 263 (794)
||+||+|+|+|||||||+|||.+|+|. +. ...++++++|+++|++|+.++++.|+++|++||+++||+++|+||||.|
T Consensus 82 rm~G~~v~~~~GwD~hGlpiE~~a~k~-G~-~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~rlG~~~Dwd~~~~T~d~~~ 159 (917)
T 1ffy_A 82 TMQGFYAPYVPGWDTHGLPIEQALTKK-GV-DRKKMSTAEFREKCKEFALEQIELQKKDFRRLGVRGDFNDPYITLKPEY 159 (917)
T ss_dssp HTTTCBCCCCCEEBCCSHHHHHHHHHH-TC-CSTTTCHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSCTTSCEETTSHHH
T ss_pred HhCCCCCCCcccCchhhHHHHHHHHHc-CC-CchhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCeEEccCCCeEcCCHHH
Confidence 999999999999999999999999987 32 2456889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCeeecccCceeccCCCccccccccccCCcccccccceeEEeccCCCCcccccccccCCccceecc
Q 003799 264 EAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAEAELEYPEGHVSRSIYAVFRMVSAPPSTSGLLNEFLPDLGLAVWT 343 (794)
Q Consensus 264 ~~~v~~~f~~L~~kGlIy~~~~~v~w~~~~~t~Lae~Evey~e~~~~~~~~v~F~l~~~~~~~~~~l~~~~~~~~l~iwT 343 (794)
++.++++|.+|+++|+||++.++|+|||.|+|+|||+||+|.+ +.++++||+|++.+.. ..++ .+.+++|||
T Consensus 160 ~~~v~~~F~~l~~kGliYr~~~~v~wcp~~~T~Lae~eVey~d-~~~~~~~v~f~~~~~~----g~~~---~~~~~~i~T 231 (917)
T 1ffy_A 160 EAAQIRIFGEMADKGLIYKGKKPVYWSPSSESSLAEAEIEYHD-KRSASIYVAFNVKDDK----GVVD---ADAKFIIWT 231 (917)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCGGGEEEEE-EEEEEEECCBCCCSST----TGGG---TTCCBCCEE
T ss_pred HHHHHHHHHHHHHcCCeEecccceeccCCCCcCcchhhhhccc-ccCceEEEEEEecccc----cccC---CCCeEEEEe
Confidence 9999999999999999999999999999999999999999966 7889999999986521 0111 257899999
Q ss_pred CCCCccccccEEEECCCcceeeeeecccccCCCCCcCCCCCCCCCcccCCcceEeeecccchHHHHHhcCC-ceE--EEe
Q 003799 344 TTPWTVPANAAVAVNAKLQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFIIVASDLVPTLEAKWGT-KLV--IKK 420 (794)
Q Consensus 344 T~PwTi~~n~av~v~p~~~Y~~v~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~iv~~~~~~~~~~~~~~-~~~--~~~ 420 (794)
|||||||||+||||||++.|+++++. ++.+++++++++.+....+. .++ ++.
T Consensus 232 TrP~Tl~~~~av~v~p~~~Y~~v~~~-------------------------~~~~i~a~~~~~~~~~~~~~~~~~~~~~~ 286 (917)
T 1ffy_A 232 TTPWTIPSNVAITVHPELKYGQYNVN-------------------------GEKYIIAEALSDAVAEALDWDKASIKLEK 286 (917)
T ss_dssp SCGGGSSCCBCCCCCTTCCCCCCCTT-------------------------TTCCCCCHHHHHHHHTTTTCCSSCCCCCC
T ss_pred CCcchhhhceEEEECCCCceEEEEeC-------------------------CceeehHHHHHHHHHHhcCcccceeeeee
Confidence 99999999999999999999988753 35799999999999988775 355 789
Q ss_pred eeccCcccCCeeecCCCCCcccEEeccCcccccCCCCceeecCCCChhhHHHHHHhCCCccccCCCCCccccccCCCCCc
Q 003799 421 TLAGSDLENCRYVHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPILSPVDDEGKFTEEAGKFSGL 500 (794)
Q Consensus 421 ~~~G~~L~g~~~~~Pl~~~~~pvvi~~~~V~~~~GTG~Vh~aPaHg~~D~~~~~~~gl~i~~~vd~~G~~~~~~~~~~G~ 500 (794)
+++|++|+|+++.||++++++|| +.++||++++|||+||+|||||++||+++++||||++++||++|+|+++.|+|.|+
T Consensus 287 ~~~G~~l~g~~~~~P~~~~~~pv-i~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~L~~~~~vd~~G~~~~~~~~~~G~ 365 (917)
T 1ffy_A 287 EYTGKELEWVVAQHPFLDRESLV-INGDHVTTDAGTGCVHTAPGHGEDDYIVGQQYELPVISPIDDKGVFTEEGGQFEGM 365 (917)
T ss_dssp CCCTTTCTTCCCBCCTTCCSBCC-CCCCSSCCSSSCSCCCBCTTSCSHHHHTTTSSSCCCCCCCCSSSCCCTTCSSCSSS
T ss_pred eeecccccCCEEECCCCCCeeeE-EeccccccCCCCceeEeCCCCCHHHHHHHHHcCCCeeeeECCCceeCCcccccCCc
Confidence 99999999999999999999999 67999999999999999999999999999999999999999999999999999999
Q ss_pred cccccchHHHHHHHHhcCCcccccccccccccccCCCCcEEEcccCccccchhhHHHHHHhhhcCeeecCCC--------
Q 003799 501 DVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTKKPTIFRATEQWFASVEGFRQAAMDAIGQVKWVPPQ-------- 572 (794)
Q Consensus 501 ~v~~ea~~~ii~~L~~~g~l~~~~~~~h~yp~~WRt~~pii~r~t~QWfi~~~~~~~~~l~~i~~v~~~P~~-------- 572 (794)
+++ +|++.|++.|++.|.+++.+.+.|+||||||||+|||||+++|||++++++|+++++++++++|+|++
T Consensus 366 ~v~-~A~~~Ii~~L~~~g~l~~~~~~~hs~p~c~R~~~pv~~r~t~QWFi~~~~lr~~~l~~i~~~~~~P~~~~~r~~~~ 444 (917)
T 1ffy_A 366 FYD-KANKAVTDLLTEKGALLKLDFITHSYPHDWRTKKPVIFRATPQWFASISKVRQDILDAIENTNFKVNWGKTRIYNM 444 (917)
T ss_dssp CSS-HHHHTTGGGSSHHHHCCCCEEEEEEEEEETTTCCBCEEEEEEEEEECHHHHHHHHHHHHHTSEESSHHHHHHHHHH
T ss_pred CHH-HHHHHHHHHHHhCCCccccccccccCCEecCCCCEEEEEeccceEeeHHHHHHHHHHHHhcCcccCHHHHHHHHHH
Confidence 997 99999999999999999999999999999999999999999999999999999999999888776643
Q ss_pred --------------------------------------------------------------------------------
Q 003799 573 -------------------------------------------------------------------------------- 572 (794)
Q Consensus 573 -------------------------------------------------------------------------------- 572 (794)
T Consensus 445 l~~~~DW~ISRqr~WG~PIP~~~~~~g~~~~~~~~~~~i~~~~~~~g~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~D~ 524 (917)
T 1ffy_A 445 VRDRGEWVISRQRVWGVPLPVFYAENGEIIMTKETVNHVADLFAEHGSNIWFEREAKDLLPEGFTHPGSPNGTFTKETDI 524 (917)
T ss_dssp HHHCCCEECEESCSSSCBCCCEECTTSCEECCHHHHHHHHHHHHHHCTHHHHHSCHHHHSSTTCCCSSCTTSCCEECCCE
T ss_pred HhcCccceeeccCCcCcccceeeCCCCCEecCHHHHHHHHHHhhhcCCcccccCCHHHhcccccccccCCcccccccCCC
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 003799 573 -------------------------------------------------------------------------------- 572 (794)
Q Consensus 573 -------------------------------------------------------------------------------- 572 (794)
T Consensus 525 lD~WfdSg~~~~~~l~~~~~~~~P~Dl~~~G~D~~r~wf~~~l~~s~~~~g~~Pfk~v~~hG~V~d~~G~KMSKSlGNvV 604 (917)
T 1ffy_A 525 MDVWFDSGSSHRGVLETRPELSFPADMYLEGSDQYRGWFNSSITTSVATRGVSPYKFLLSHGFVMDGEGKKMSKSLGNVI 604 (917)
T ss_dssp ECHHHHHHTHHHHTTTTSTTCCSSBSEEEEEGGGGTTHHHHHHHHHHHHHSSCSBSEEEEECCEECTTSCCCCSSSSCCC
T ss_pred cCeecCCCCCHHHHcCCchhcCCCceEEEEEecccccHHHHHHHHHHHhhCCCcccceeEeeeEEcCCCcCcccccCCcC
Confidence
Q ss_pred ----CCCCCCCchhhhhhhhcCCCCceecChHHHHHHHHHHHHHHhHHHHHHhcccCCCCC-CCcCCCCCChhhHHHHHH
Q 003799 573 ----EAPGYGADVLRLWVSSVDYTGDVMIGPQVLRQMSDIYRKLRGTLRYLLGNLHDWRVG-NSISYDDLPMIDQYALFQ 647 (794)
Q Consensus 573 ----~~~~yGaD~lRl~las~~~~~Di~~s~~~l~~~~~~~~kl~Nt~rfll~nl~~~~~~-~~~~~~~l~~~D~~il~~ 647 (794)
++++||+|++|||++++++++|++|+++.++++.++++||+|++||+++|+.+|.+. ..++..++..+|+|++++
T Consensus 605 ~P~dvi~~yGaDalR~~lls~~~~~D~~fs~~~l~~~~~~~~kl~n~~r~~l~nl~~~~~~~~~v~~~~l~~~D~~il~~ 684 (917)
T 1ffy_A 605 VPDQVVKQKGADIARLWVSSTDYLADVRISDEILKQTSDDYRKIRNTLRFMLGNINDFNPDTDSIPESELLEVDRYLLNR 684 (917)
T ss_dssp CHHHHHHHTCHHHHHHHHHTSCTTSCEECCHHHHHHHHHHHHHHHHHHHHHHHTSTTCCHHHHCCCGGGSCHHHHHHHHH
T ss_pred ChHHHHHhCCHHHHHHHHhccCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHhhhhccCcccccCCccccCHHHHHHHHH
Confidence 224799999999999999999999999999999999999999999999999887642 223344567899999999
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhHHHHHhhccccccCCCChHhHHHHHHHHHHHHHHHHHHhccccchHH
Q 003799 648 LENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLA 727 (794)
Q Consensus 648 l~~lv~~v~~~~e~y~f~~ai~~l~~f~~~~lsn~Yle~~K~rly~~~~d~~~r~s~~~vL~~iL~~l~~lLaP~~P~~a 727 (794)
+++++++++++|++|+|++|++.|++|+++++||+|++++|+|+|+++.++..|++++++|+++++.+++||||||||+|
T Consensus 685 l~~~~~~v~~a~e~~~f~~a~~~l~~f~~~~l~~~Yl~~~k~rl~~~~~~~~~r~~~~~~l~~~l~~l~~lLaP~~P~~a 764 (917)
T 1ffy_A 685 LREFTASTINNYENFDYLNIYQEVQNFINVELSNFYLDYGKDILYIEQRDSHIRRSMQTVLYQILVDMTKLLAPILVHTA 764 (917)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCCCCCHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHHHHHTTTSHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHhcchhhhccCCCcHHHHHHHHHHHHHHHHHHHHhcccccHHH
Confidence 99999999999999999999999999998789999999999999998766677889999999999999999999999999
Q ss_pred HHHHHhCCCCccccCCCCCCceeecCCCCCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhcC
Q 003799 728 EDVWQNLPFAYTLEDGSAAEFVFESKWPVLDEKWRTFPVGEIYFWGKILEVIVVVTYLNETEG 790 (794)
Q Consensus 728 EEiw~~L~~~~~~~~~~~~~sV~~~~wP~~~e~~~~~~~~~~~~~~~i~~lR~~v~~~~e~~~ 790 (794)
||||++|+.. ..+|||.+.||++++ . ++.+++.|+.++++|+.|+++++.+|
T Consensus 765 Eeiw~~l~~~-------~~~sv~~~~wP~~~~--~--~~~l~~~~~~~~~v~~~v~~~~~~~R 816 (917)
T 1ffy_A 765 EEVWSHTPHV-------KEESVHLADMPKVVE--V--DQALLDKWRTFMNLRDDVNRALETAR 816 (917)
T ss_dssp HHHHTTSTTC-------SSSSGGGSCCCCCCC--C--CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcccC-------CCCCeEecCCCCCCc--c--hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999742 136999999999875 2 36778889999999999999988765
No 2
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=100.00 E-value=2e-117 Score=1071.29 Aligned_cols=573 Identities=23% Similarity=0.386 Sum_probs=520.1
Q ss_pred CCCCCCcccccHHHHHHHhhcCcchhccccCCCCcEEEEcCCCCCCCcccchHHHhHHHHHHHHHHHHhCCCeeEEeccc
Q 003799 117 FGMRANALVREPEIHKLWDDHQVFLRVADKNDGENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGW 196 (794)
Q Consensus 117 f~~r~n~~~~E~~~~~~W~~~~~~~~~~~~~~~~~f~i~~~pPy~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G~ 196 (794)
++.++|+..+|++||++|++ ++|++.. +.++++|+|++|||||||.|||||++|++++|+++||+||+||+|+|++||
T Consensus 3 ~~~~y~~~~~E~~~~~~W~~-~~f~~~~-~~~~~~f~i~~ppPy~nG~lHiGHa~~~~l~Dii~Ry~rm~G~~vl~~~G~ 80 (862)
T 1gax_A 3 LPKAYDPKSVEPKWAEKWAK-NPFVANP-KSGKPPFVIFMPPPNVTGSLHMGHALDNSLQDALIRYKRMRGFEAVWLPGT 80 (862)
T ss_dssp CCSSCCGGGTHHHHHHHHHH-SCCCCCT-TCCSCEEEEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTSEEEEECEE
T ss_pred CccCCChHHHHHHHHHHHHh-CCCccCc-CCCCCcEEEEcCCCCCCCCcchhhhHHHHHHHHHHHHHHhCCCcccccccc
Confidence 34568899999999999999 9999875 346789999999999999999999999999999999999999999999999
Q ss_pred cCCCchHHHHHHhhchhh--hhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCCccccCChHHHHHHHHHHHHH
Q 003799 197 DCHGLPIELKVLQSLDED--AKKDLTPSKLRAKAAKFAKATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQM 274 (794)
Q Consensus 197 D~hGlpie~~~~k~~~~~--~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~lGi~~dwd~~~~T~d~~~~~~v~~~f~~L 274 (794)
||||+|||.++++.++.. ...++++++|+++|++|++++++.++++|++||++.||+++|+||||.|++.++++|.+|
T Consensus 81 D~~Glp~e~~vek~l~~~g~~~~~~~~~~f~~~~~~~~~~~~~~~~~q~~rlG~s~Dw~r~~~T~d~~~~~~v~~~F~~L 160 (862)
T 1gax_A 81 DHAGIATQVVVERLLLKEGKTRHDLGREKFLERVWQWKEESGGTILKQLKRLGASADWSREAFTMDEKRSRAVRYAFSRY 160 (862)
T ss_dssp BCCTHHHHHHHHTTTTTTTSCCSCCCTTHHHHHHHHHHHHHHHHHHHHHHHTTCCCCGGGCEETTSHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHcCCChHHcCHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCCCcccCCHHHHHHHHHHHHHH
Confidence 999999999999887532 345778899999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCeeecccCceeccCCCccccccccccCCcccccccceeEEeccCCCCcccccccccCCccceeccCCCCccccccE
Q 003799 275 SLQGYIYRGKKPVHWSPSSRTALAEAELEYPEGHVSRSIYAVFRMVSAPPSTSGLLNEFLPDLGLAVWTTTPWTVPANAA 354 (794)
Q Consensus 275 ~~kGlIy~~~~~v~w~~~~~t~Lae~Evey~e~~~~~~~~v~F~l~~~~~~~~~~l~~~~~~~~l~iwTT~PwTi~~n~a 354 (794)
+++|+||+|.++|+|||.|+|+|||+||+|++ +.++++||+|++.+. .+++|||||||||+||+|
T Consensus 161 ~~kGliYrg~~~v~wcp~~~T~Lsd~EV~~~e-~~g~~~~v~f~~~~~--------------~~l~v~TTrPeTl~g~~a 225 (862)
T 1gax_A 161 YHEGLAYRAPRLVNWCPRCETTLSDLEVETEP-TPGKLYTLRYEVEGG--------------GFIEIATVRPETVFADQA 225 (862)
T ss_dssp HTTSSEEEECCEEEEETTTTEEECGGGEEECC-EEEEEEEEECCCSSS--------------CCCEEEESCSGGGTTCCC
T ss_pred HHCCCEEecccccccCCCcCcccccccccccc-ccceEEEEEEEecCC--------------CEEEEEeCCccccccceE
Confidence 99999999999999999999999999999965 788999999998531 479999999999999999
Q ss_pred EEECCCcc-eeeeeecccccCCCCCcCCCCCCCCCcccCCcceEeeecccchHHHHHhcCCceEEEeeeccCcccCCeee
Q 003799 355 VAVNAKLQ-YAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFIIVASDLVPTLEAKWGTKLVIKKTLAGSDLENCRYV 433 (794)
Q Consensus 355 v~v~p~~~-Y~~v~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~G~~L~g~~~~ 433 (794)
|||||++. | ++|+|+++.
T Consensus 226 vav~P~~~ry-------------------------------------------------------------~~l~G~~~~ 244 (862)
T 1gax_A 226 IAVHPEDERY-------------------------------------------------------------RHLLGKRAR 244 (862)
T ss_dssp EEECSSCCTT-------------------------------------------------------------CSCTTCCCB
T ss_pred EEECCCccHH-------------------------------------------------------------HHHcCCEEE
Confidence 99999963 2 168899999
Q ss_pred cCCCCCcccEEeccCcccccCCCCceeecCCCChhhHHHHHHhCCCccccCCCCCcccccc--CCCCCccccccchHHHH
Q 003799 434 HPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPILSPVDDEGKFTEEA--GKFSGLDVLGDGNVAVV 511 (794)
Q Consensus 434 ~Pl~~~~~pvvi~~~~V~~~~GTG~Vh~aPaHg~~D~~~~~~~gl~i~~~vd~~G~~~~~~--~~~~G~~v~~ea~~~ii 511 (794)
||+.++++|| +.++||++++|||+||++||||++||++|++||||++++||++|++++++ |+|.|++++ +|++.|+
T Consensus 245 ~P~~~~~ipi-i~~~~V~~~~GTG~V~~~Pahd~~D~~~~~~~~L~~~~~id~~G~~~~~~~~g~~~Gl~~~-~a~~~iv 322 (862)
T 1gax_A 245 IPLTEVWIPI-LADPAVEKDFGTGALKVTPAHDPLDYEIGERHGLKPVSVINLEGRMEGERVPEALRGLDRF-EARRKAV 322 (862)
T ss_dssp CTTCCCBCCE-EECTTCCTTSSSSEEECCGGGCHHHHHHHHHTTCCCCCSBCTTSBBCSSSSCTTTSSSBSS-HHHHHHH
T ss_pred CCCCCCeeeE-EeccccccCCCCcceEecCCCCchHHHHHHHcCCCccceeCCCCccccccCCcccCCcCHH-HHHHHHH
Confidence 9999999999 67999999999999999999999999999999999999999999999998 899999996 9999999
Q ss_pred HHHHhcCCcccccccccccccccCCCCcEEEcccCccccchhhHHHHHHhhhc--CeeecCCC-----------------
Q 003799 512 KYLDEQMSLIMEEPYEHKYPYDWRTKKPTIFRATEQWFASVEGFRQAAMDAIG--QVKWVPPQ----------------- 572 (794)
Q Consensus 512 ~~L~~~g~l~~~~~~~h~yp~~WRt~~pii~r~t~QWfi~~~~~~~~~l~~i~--~v~~~P~~----------------- 572 (794)
+.|++.|++++.+++.|+|||||||++||++++++|||++++.++++++++++ +++|+|++
T Consensus 323 ~~L~~~g~l~~~~~~~h~~p~c~R~~~~i~~~~~~qWFv~~~~~~~~~l~~v~~~~~~~~P~~~~~~~~~wl~~l~DW~I 402 (862)
T 1gax_A 323 ELFREAGHLVKEEDYTIALATCSRCGTPIEYAIFPQWWLRMRPLAEEVLKGLRRGDIAFVPERWKKVNMDWLENVKDWNI 402 (862)
T ss_dssp HHHHTTTCEEEEEEEEECCEEETTTCSBCCEEECCEEEECHHHHHHHHHHHHHHTCCEESSSHHHHHHHHHHHTCCCCCC
T ss_pred HHHHhCCCeeeeccccccCCeecCCCCeEEEEecceEEEEhHHHHHHHHHHHHcCCceEcCHHHHHHHHHHHhcccceeE
Confidence 99999999999999999999999999999999999999999999999999973 45555543
Q ss_pred --------------------------------------------------------------------------------
Q 003799 573 -------------------------------------------------------------------------------- 572 (794)
Q Consensus 573 -------------------------------------------------------------------------------- 572 (794)
T Consensus 403 SRqr~WG~pIP~w~~~~~~~i~v~~~~~l~~~~~~~~~~g~~~~~r~~DvlDtWfdS~~~~~~~~~~p~~~~~~~~~~P~ 482 (862)
T 1gax_A 403 SRQLWWGHQIPAWYCEDCQAVNVPRPERYLEDPTSCEACGSPRLKRDEDVFDTWFSSALWPLSTLGWPEETEDLKAFYPG 482 (862)
T ss_dssp BCCCSSSCCCCCEEETTTCCEECCCGGGTTCCCCSCTTTCCSCEEECCCCBCHHHHHTSCTTGGGTTTSCCHHHHHSCSB
T ss_pred ecccCCCcccCceecCCCCEEEEeccccccccchhhhhcCchheecCCcccceeeccCCcchhhccCCCchHHHHhhCCc
Confidence
Q ss_pred -----------------------------------------------------------CCCCCCCchhhhhhhhc-CCC
Q 003799 573 -----------------------------------------------------------EAPGYGADVLRLWVSSV-DYT 592 (794)
Q Consensus 573 -----------------------------------------------------------~~~~yGaD~lRl~las~-~~~ 592 (794)
++++||+|++|||+++. +++
T Consensus 483 d~~v~G~Dii~~W~a~~~~~~~~~~g~~Pfk~v~~hG~vld~~G~KMSKSlGNvIdP~dli~~yGaDalR~~ll~~~~~~ 562 (862)
T 1gax_A 483 DVLVTGYDILFLWVSRMEVSGYHFMGERPFKTVLLHGLVLDEKGQKMSKSKGNVIDPLEMVERYGADALRFALIYLATGG 562 (862)
T ss_dssp SCEEEEGGGTTTTHHHHHHHHHHHSSSCSBSEEEEECCEECTTSCBCCTTTTCCCCHHHHHHHHCHHHHHHHHHHHCCTT
T ss_pred eEEecCccccccHHHHHHHHHHHhcCCCcccEEEEeeeEEcCCCCCccccCCCCCCHHHHHHHcChHHHHHHHHhcCCCC
Confidence 22479999999999875 889
Q ss_pred CceecChHHHHHHHHHHHHHHhHHHHHHhcccCCCCCCCcCCCCCChhhHHHHHHHHHHHHHHHHHHhcccHHHHHHHHH
Q 003799 593 GDVMIGPQVLRQMSDIYRKLRGTLRYLLGNLHDWRVGNSISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQ 672 (794)
Q Consensus 593 ~Di~~s~~~l~~~~~~~~kl~Nt~rfll~nl~~~~~~~~~~~~~l~~~D~~il~~l~~lv~~v~~~~e~y~f~~ai~~l~ 672 (794)
+|++|+++.+++..++++||||++||+++|+.++.+. ...+..+|+|+++++++++++++++|++|+|++|++.++
T Consensus 563 ~D~~fs~~~l~~~~~f~nkl~N~~rf~~~~~~~~~~~----~~~~~~~D~~il~~l~~~~~~v~~a~e~~~f~~A~~~l~ 638 (862)
T 1gax_A 563 QDIRLDLRWLEMARNFANKLYNAARFVLLSREGFQAK----EDTPTLADRFMRSRLSRGVEEITALYEALDLAQAAREVY 638 (862)
T ss_dssp CCEECCHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCC----BCCCCHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHHHHHHHHHHhcccCCCCc----cccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 9999999999999999999999999999988776431 134678999999999999999999999999999999999
Q ss_pred HHHHHhhhHHHHHhhccccccCCCChHhHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhCCCCccccCCCCCCceeec
Q 003799 673 RFIIVDLSNFYFDVAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAAEFVFES 752 (794)
Q Consensus 673 ~f~~~~lsn~Yle~~K~rly~~~~d~~~r~s~~~vL~~iL~~l~~lLaP~~P~~aEEiw~~L~~~~~~~~~~~~~sV~~~ 752 (794)
+|+++++||||++.+|+|+|++ +++++++|+++|+.+++||||||||+|||||++|+. .+|||.+
T Consensus 639 ~f~~~~~~n~Yie~~k~~l~~~------~~~~~~~l~~~l~~~~~lL~P~~P~~aEeiw~~L~~---------~~sv~~~ 703 (862)
T 1gax_A 639 ELVWSEFCDWYLEAAKPALKAG------NAHTLRTLEEVLAVLLKLLHPMMPFLTSELYQALTG---------KEELALE 703 (862)
T ss_dssp HHHHHHTTTTHHHHHHHHHHTT------BHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHC---------CSCGGGS
T ss_pred HHHHHHhhHHHHHHcchhhhcc------HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCC---------CCeEEec
Confidence 9999889999999999999864 467888999999999999999999999999999963 2689999
Q ss_pred CCCCCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhcCCC
Q 003799 753 KWPVLDEKWRTFPVGEIYFWGKILEVIVVVTYLNETEGFS 792 (794)
Q Consensus 753 ~wP~~~e~~~~~~~~~~~~~~~i~~lR~~v~~~~e~~~~~ 792 (794)
+||+++ +. ++++++.++.++++-..++.+....+++
T Consensus 704 ~wP~~~--~~--d~~~~~~~~~~~~v~~~~r~~r~~~~i~ 739 (862)
T 1gax_A 704 AWPEPG--GR--DEEAERAFEALKQAVTAVRALKAEAGLP 739 (862)
T ss_dssp CCCCCC--CC--CHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCC--cC--CHHHHHHHHHHHHHHHHHHHhhhhhcCC
Confidence 999987 23 4667777888887777777776666543
No 3
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=100.00 E-value=4.2e-118 Score=1082.22 Aligned_cols=625 Identities=29% Similarity=0.517 Sum_probs=553.9
Q ss_pred CCCCcccccHHHHHHHhhcCcchhccc-cCCCCcEEEEcCCCCCCCcccchHHHhHHHHHHHHHHHHhCCCeeEEecccc
Q 003799 119 MRANALVREPEIHKLWDDHQVFLRVAD-KNDGENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWD 197 (794)
Q Consensus 119 ~r~n~~~~E~~~~~~W~~~~~~~~~~~-~~~~~~f~i~~~pPy~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G~D 197 (794)
|++|+..+|++||++|+++++|++..+ +.++++|++++|||||||.|||||++|++++|+++||+||+||+|+|++|||
T Consensus 6 ~~~~~~~~E~~~~~~W~~~~~f~~~~~~~~~~~~f~i~~~pPy~nG~lHiGH~~~~~~~D~i~R~~rm~G~~v~~~~G~D 85 (821)
T 1ile_A 6 GEPNFPKLEEEVLAFWKREKIFQKSVENRKGGPRYTVYEGPPTANGLPHVGHAQARSYKDLFPRYKTMRGYYAPRRAGWD 85 (821)
T ss_dssp CCCCHHHHHHHHHHHHHHTTHHHHHHHHTTTSCBCCBCCCCCCTTSCCCTTHHHHHHHHHHHHHHHHHTTCBCCCEEEEC
T ss_pred cCCCHHHHHHHHHHHHHHCCCcccChhhcCCCCcEEEecCCCCCCCCCchhhhHhHHHHHHHHHHHHhcCCccccccccc
Confidence 899999999999999999999998754 3467999999999999999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHhhchh---hhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCCccccCChHHHHHHHHHHHHH
Q 003799 198 CHGLPIELKVLQSLDE---DAKKDLTPSKLRAKAAKFAKATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQM 274 (794)
Q Consensus 198 ~hGlpie~~~~k~~~~---~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~lGi~~dwd~~~~T~d~~~~~~v~~~f~~L 274 (794)
|||+|||.+|+|.++. ....+++.++|++.|++++.++++.|+++|++||+++||+++|+|+||.|++.++++|.+|
T Consensus 86 ~~Glpie~~a~k~l~~~~~~~~~~~g~~~f~~~~~~~~~~~~~~~~~~~~~lg~~~dwd~~~~T~d~~~~~~v~~~f~~L 165 (821)
T 1ile_A 86 THGLPVELEVEKKLGLKSKREIEAYGIERFNQACRESVFTYEKEWEAFTERIAYWVDLEDAYATLEPTYIESIWWSLKNL 165 (821)
T ss_dssp CCHHHHHHHHHHHTTCCSHHHHHHHCHHHHHHHHHHHTTTTHHHHTTHHHHTTCCCEEEEEEETTSHHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHhcccccchHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCeEccCCCeEECCHHHHHHHHHHHHHH
Confidence 9999999999987653 2234567899999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCeeecccCceeccCCCccccccccc--cCCcccccccceeEEeccCCCCcccccccccCCccceeccCCCCccccc
Q 003799 275 SLQGYIYRGKKPVHWSPSSRTALAEAELE--YPEGHVSRSIYAVFRMVSAPPSTSGLLNEFLPDLGLAVWTTTPWTVPAN 352 (794)
Q Consensus 275 ~~kGlIy~~~~~v~w~~~~~t~Lae~Eve--y~e~~~~~~~~v~F~l~~~~~~~~~~l~~~~~~~~l~iwTT~PwTi~~n 352 (794)
+++|+||++.++|+|||.|+|+|||+||+ |.+ ++++++||+|++.+... ....+.+++||||||||||||
T Consensus 166 ~~~Gliy~~~~~v~wcp~~~t~Lad~ev~~G~~~-~~~~~~~v~f~~~~~~~-------~~~~~~~l~v~TTrP~Tl~g~ 237 (821)
T 1ile_A 166 FDRGLLYRDHKVVPYCPRCGTPLSSHEVALGYKE-IQDPSVYVRFPLKEPKK-------LGLEKASLLIWTTTPWTLPGN 237 (821)
T ss_dssp HHTTCEEEECCEEEEETTTTEECCHHHHHHTEEE-EEEEEEEEEEEBSSGGG-------GTCSSEEEEEEESCGGGGGGC
T ss_pred HHcCCeeecCcceEecCCCCCcccHhHhhcCccc-ccCceEEEEEEecCCcc-------cCCCCCEEEEEcCCChhhhhc
Confidence 99999999999999999999999999994 654 78999999999964200 001357899999999999999
Q ss_pred cEEEECCCcceeeeeecccccCCCCCcCCCCCCCCCcccCCcceEeeecccchHHHHHhcCCceEEEeeeccCcccCCee
Q 003799 353 AAVAVNAKLQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFIIVASDLVPTLEAKWGTKLVIKKTLAGSDLENCRY 432 (794)
Q Consensus 353 ~av~v~p~~~Y~~v~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~G~~L~g~~~ 432 (794)
+||||||++.|++++.+ ++.+|+++++++++... .++++++++|++|+|+.+
T Consensus 238 ~av~v~p~~~y~~~~~~-------------------------~~~~i~a~~~~~~~~~~---~~~~~~~~~G~~l~g~~~ 289 (821)
T 1ile_A 238 VAAAVHPEYTYAAFQVG-------------------------DEALILEEGLGRKLLGE---GTQVLKTFPGKALEGLPY 289 (821)
T ss_dssp CCEEECTTSCEEEEEET-------------------------TEEEEEETTHHHHHTCT---TSCEEEEECHHHHTTCBB
T ss_pred EEEEECCCCceeEEEcC-------------------------CcEEEehHHHHHHHHhh---CcEEEEEechHHhcCCEE
Confidence 99999999999988753 47899999999988653 578899999999999999
Q ss_pred ecCCC---CCcccEEeccCcccccCCCCceeecCCCChhhHHHHHHhCCCccccCCCCCccccccCCCCCccccccchHH
Q 003799 433 VHPVD---NRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPILSPVDDEGKFTEEAGKFSGLDVLGDGNVA 509 (794)
Q Consensus 433 ~~Pl~---~~~~pvvi~~~~V~~~~GTG~Vh~aPaHg~~D~~~~~~~gl~i~~~vd~~G~~~~~~~~~~G~~v~~ea~~~ 509 (794)
.||+. ++.+|| +.++||++++|||+||+|||||++||.+|++||||++++||++|+++++ + |.|+++. +|++.
T Consensus 290 ~~p~~~~~~~~~pi-~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~l~~~~~id~~G~~~~~-~-~~G~~~~-~a~~~ 365 (821)
T 1ile_A 290 TPPYPQALEKGYFV-VLADYVSQEDGTGIVHQAPAFGAEDLETARVYGLPLLKTVDEEGKLLVE-P-FKGLYFR-EANRA 365 (821)
T ss_dssp CCSSCCCCSSCSBE-EECTTCCSSSSCSCEECCTTSCHHHHHHHHHTTCCCCCCBCTTSBBCSG-G-GTTCBHH-HHHHH
T ss_pred EcCCcccCCCEEEE-EecCcCccCCCCcceEecCCCCHHHHHHHHHcCCCcceeECCCCcCccc-C-cCCCCHH-HHHHH
Confidence 99996 788999 6799999999999999999999999999999999999999999999988 7 9999996 99999
Q ss_pred HHHHHHhcCCcccccccccccccccCCCCcEEEcccCccccchhhHHHHHHhhhcCeee---------------------
Q 003799 510 VVKYLDEQMSLIMEEPYEHKYPYDWRTKKPTIFRATEQWFASVEGFRQAAMDAIGQVKW--------------------- 568 (794)
Q Consensus 510 ii~~L~~~g~l~~~~~~~h~yp~~WRt~~pii~r~t~QWfi~~~~~~~~~l~~i~~v~~--------------------- 568 (794)
|++.|++.|.+++.+.|.|+||||||||+|+|+++++|||++++++++++++.+++++|
T Consensus 366 i~~~L~~~g~~~~~~~~~h~~p~c~r~~~~~~~~~~~qWF~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~l~~l~DW~ 445 (821)
T 1ile_A 366 ILRDLRGRGLLFKEESYLHSYPHCWRCSTPLMYYATESWFIKNTLFKDELIRNNQEIHWVPPHIKEGRYGEWLKNLVDWA 445 (821)
T ss_dssp HHHHHHHTTCEEEEEEEEEEEEBCSSSCCBCEEEECCEEEECGGGGHHHHHHHHHHSEESSGGGTTTTTHHHHHTCCCEE
T ss_pred HHHHHHhCCCeeeeecccccCCEecCCCCEEEEEecchhhhchHHHHHHHHHHhcCeEEECchhhHhHHHHHHhCCchhe
Confidence 99999999999999999999999999999999999999999999999999877654433
Q ss_pred ----------cC---------------------------C---------------------------C------------
Q 003799 569 ----------VP---------------------------P---------------------------Q------------ 572 (794)
Q Consensus 569 ----------~P---------------------------~---------------------------~------------ 572 (794)
+| . +
T Consensus 446 ISRqr~WG~pIP~~~~~~~~~~~vi~~~~~l~~~~~~~~~~~~~l~~~~~d~~~~~~~~g~~~~r~~dvld~WfdS~~~~ 525 (821)
T 1ile_A 446 LSRNRYWGTPLPIWVCQACGKEEAIGSFQELKARATKPLPEPFDPHRPYVDQVELACACGGTMRRVPYVIDVWYDSGAMP 525 (821)
T ss_dssp CCBCCSSSCBCCEEEESSSSCCEECCSHHHHHHHBSSCCCSSCCCSHHHHTTCEEECTTSSEEEECSCBCCHHHHHHHHH
T ss_pred ecccCCCCCeeeEEEecCCCcEEeeCcHHHHHhhccccccchhhhccccccccccCCCCCCchhhcccccceecccccch
Confidence 12 0 1
Q ss_pred -------------------------------------------------------------------------------C
Q 003799 573 -------------------------------------------------------------------------------E 573 (794)
Q Consensus 573 -------------------------------------------------------------------------------~ 573 (794)
+
T Consensus 526 ~~~~~~p~~~~~~f~~~~P~dl~~~G~D~~r~w~~~~~~~~~~~~~~~pf~~v~~hg~vl~~~G~KMSKS~GNvV~p~dl 605 (821)
T 1ile_A 526 FASLHYPFEHEEVFRESFPADFIAEGIDQTRGWFNSLHQLGVMLFGSIAFKNVICHGLILDEKGQKMSKSKGNVVDPWDI 605 (821)
T ss_dssp HHTTTTTTSCHHHHHHHSSBSBEEEEGGGGGTHHHHHHHHHHHHHSSCSBSEEEEECCEECTTSSCCCTTTTCCCCHHHH
T ss_pred HhhcCCCccchHHHhhcCCcccccchhhhhccHHHHHHHHHHHhcCCCCcceEEEEeeEECCCCCCCCccCCCCCCHHHH
Confidence 3
Q ss_pred CCCCCCchhhhhhhhc-CCCCceecChHHHHH-HHHHHHHHHhHHHHHH--hcccCCCC-CCCcCCCCCChhhHHHHHHH
Q 003799 574 APGYGADVLRLWVSSV-DYTGDVMIGPQVLRQ-MSDIYRKLRGTLRYLL--GNLHDWRV-GNSISYDDLPMIDQYALFQL 648 (794)
Q Consensus 574 ~~~yGaD~lRl~las~-~~~~Di~~s~~~l~~-~~~~~~kl~Nt~rfll--~nl~~~~~-~~~~~~~~l~~~D~~il~~l 648 (794)
+++||+|++|||+++. ++++|++|+++.+++ +.+++++|||+++|+. +++.++.+ ... ....+...|+|+++++
T Consensus 606 i~~yGaDalR~~ll~~~~~~~d~~fs~~~l~~~~~~~~~kl~N~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~ll~~l 684 (821)
T 1ile_A 606 IRKFGADALRWYIYVSAPPEADRRFGPNLVRETVRDYFLTLWNVYSFFVTYANLDRPDLKNPP-PPEKRPEMDRWLLARM 684 (821)
T ss_dssp HTTTCHHHHHHHHHHHSCSSSCEECCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHCCCTTSCC-CSTTSCHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHhCCCCCCCcEecHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccccc-ccccCCHHHHHHHHHH
Confidence 3589999999999976 689999999999999 5899999999999864 45555544 211 1234678999999999
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhHHHHHhhccccccCCCChHhHHHHHHHHHHHHHHHHHHhccccchHHH
Q 003799 649 ENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAE 728 (794)
Q Consensus 649 ~~lv~~v~~~~e~y~f~~ai~~l~~f~~~~lsn~Yle~~K~rly~~~~d~~~r~s~~~vL~~iL~~l~~lLaP~~P~~aE 728 (794)
++++++++++|++|+|++|++.|++|++++++|+|++.+|+++|+...+ ..|++++++|+++|+.+++||+|||||+||
T Consensus 685 ~~~~~~v~~a~e~~~f~~A~~~l~~f~~~~~~n~Yl~~~k~~~~~~~~~-~~r~~~~~~l~~~l~~~~~lLaP~~P~~ae 763 (821)
T 1ile_A 685 QDLIQRVTEALEAYDPTTSARALRDFVVEDLSQWYVRRNRRRFWKNEDA-LDREAAYATLYEALVLVATLAAPFTPFLAE 763 (821)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSTTTHHHHHHHHHTCTTT-SSTTHHHHHHHHHHHHHHHHHTTTSTTHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCc-HHHHHHHHHHHHHHHHHHHHcCCccchHHH
Confidence 9999999999999999999999999997789999999999999986542 235688899999999999999999999999
Q ss_pred HHHHhCCCCccccCCCCCC-ceeecCCCCCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhcCC
Q 003799 729 DVWQNLPFAYTLEDGSAAE-FVFESKWPVLDEKWRTFPVGEIYFWGKILEVIVVVTYLNETEGF 791 (794)
Q Consensus 729 Eiw~~L~~~~~~~~~~~~~-sV~~~~wP~~~e~~~~~~~~~~~~~~~i~~lR~~v~~~~e~~~~ 791 (794)
|||++|+... . ...+ |||.++||++++.+.+ +++++.++.++++++.++.+..+.++
T Consensus 764 elw~~L~~~~---~-~~~~~sv~~~~~P~~~~~~~~--~~~~~~~~~~~~~~~~~r~~r~~~~~ 821 (821)
T 1ile_A 764 VLWQNLVRSV---R-LEAKESVHLADWPEADPALAD--EALVAQMRAVLKVVDLARAARAKSGV 821 (821)
T ss_dssp HHHHHHTTTT---S-TTSCSSGGGSCCCCCCTTTCC--HHHHHHHHHHHHHHHHHTTCTTSCCC
T ss_pred HHHHhccccc---c-CCCCCceEeecCCCCCcccCC--HHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 9999997520 0 1124 9999999999987765 78888999999999999988877653
No 4
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=100.00 E-value=2.4e-109 Score=1018.08 Aligned_cols=606 Identities=22% Similarity=0.320 Sum_probs=512.3
Q ss_pred CCCcccccHHHHHHHhhcCcchhccc-cCCCCcEEEEcCCCCCCCcccchHHHhHHHHHHHHHHHHhCCCeeEEeccccC
Q 003799 120 RANALVREPEIHKLWDDHQVFLRVAD-KNDGENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDC 198 (794)
Q Consensus 120 r~n~~~~E~~~~~~W~~~~~~~~~~~-~~~~~~f~i~~~pPy~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G~D~ 198 (794)
.+|+..+|++||++|+++++|++..+ +.++++|++++|||||||.|||||++|++++|+++||+||+||+|+|+|||||
T Consensus 3 ~~~~~~iE~~~~~~W~~~~~f~~~~~~~~~~~kf~i~~~pPy~nG~lHiGH~~~~~~~Dii~Ry~rm~G~~Vl~~~GwD~ 82 (967)
T 1wz2_A 3 ELNFKAIEEKWQKRWLEAKIFEPNIRDKPKEKKFYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAWHI 82 (967)
T ss_dssp -CCCHHHHHHHHHHHHHHTTTSCCGGGSCGGGCCBEEECCCBCSSCCBHHHHHHHHHHHHHHHHHHHTTCCCBCCCCBBC
T ss_pred CCCHHHHHHHHHHHHHhCCCcccCccccCCCCcEEEEeCCCCCCCCcchhhhHHHHHHHHHHHHHHcCCCccCCCCcCCC
Confidence 46788999999999999999998754 22348999999999999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHhhchh-h-------hhcCCCHHHHH--HHHHHHHHHHHHHHHHHHHHcCCccCCCCccccCC--hHHHHH
Q 003799 199 HGLPIELKVLQSLDE-D-------AKKDLTPSKLR--AKAAKFAKATVKAQMASFKRYGVWADWNNPYLTLD--PEYEAA 266 (794)
Q Consensus 199 hGlpie~~~~k~~~~-~-------~~~~~~~~~~~--~~~~~~a~~~~~~~~~~~~~lGi~~dwd~~~~T~d--~~~~~~ 266 (794)
||+|||..+++.... . +..+++..++. ..|++|+.++.+.|+++|++||++.||+++|.||| |.|+++
T Consensus 83 ~GlPie~~a~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~Dw~r~~~T~d~np~y~~~ 162 (967)
T 1wz2_A 83 TGSPIVGIAERIKNRDPKTIWIYRDVYKVPEEILWTFEDPINIVKYFMKAAKETFIRAGFSVDWSREFYTTSLFPPFSKF 162 (967)
T ss_dssp CSSHHHHHHHHHHTTCHHHHHHHHTTSCCCHHHHHGGGSHHHHHHHHHHHHHHHHHTTTCCCCTTSCCBCSTTSHHHHHH
T ss_pred CCcHHHHHHHHhhccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCceEecCCCeEECCCChhHHHH
Confidence 999999988753211 0 11256666654 36999999999999999999999999999999999 999999
Q ss_pred HHHHHHHHHHcCCeeecccCceeccCCCccccccccccCCc-ccccccceeEEeccCCCCcccccccccCCccceeccCC
Q 003799 267 QIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAEAELEYPEG-HVSRSIYAVFRMVSAPPSTSGLLNEFLPDLGLAVWTTT 345 (794)
Q Consensus 267 v~~~f~~L~~kGlIy~~~~~v~w~~~~~t~Lae~Evey~e~-~~~~~~~v~F~l~~~~~~~~~~l~~~~~~~~l~iwTT~ 345 (794)
++|+|.+|+++|+||++.++|+|||.|+|+|||+||+|.++ ..+...+|+|++.+.. .+.+++|||||
T Consensus 163 v~~~F~~L~~kGliyr~~~~v~wcp~~~T~Lad~Ev~~~~~~~~~~~~~v~f~~~~~~-----------~~~~l~i~TTr 231 (967)
T 1wz2_A 163 IEWQFWKLKEKGYIVKGAHRVRWDPVVGTPLGDHDLMEGEDVPILDYIIIKFELRENG-----------EVIYLPAATLR 231 (967)
T ss_dssp HHHHHHHTTTTTCEEECCCCCEECTTTSCBCCSSSCSSCCCCCEECCEEEEEECCCSS-----------SCCEEEEEESC
T ss_pred HHHHHHHHHHCCCEEEeceEecccCCCCCCcchhhhccCCCceeceeEEEEEEecCCC-----------CceEEEEEcCC
Confidence 99999999999999999999999999999999999998643 2234466888885311 13689999999
Q ss_pred CCccccccEEEECCCcceeeeeecccccCCCCCcCCCCCCCCCcccCCcceEeeecccchHHHHHhcCCceEEEeeeccC
Q 003799 346 PWTVPANAAVAVNAKLQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFIIVASDLVPTLEAKWGTKLVIKKTLAGS 425 (794)
Q Consensus 346 PwTi~~n~av~v~p~~~Y~~v~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~G~ 425 (794)
|||||||+||||||++.|+++++.+ +..++.+|+++++++++..+ +.+++++++++|+
T Consensus 232 PeTl~g~~avav~P~~~Y~~~~~~~---------------------~~~~~~~i~a~~~~~~~~~~-~~~~~~~~~~~G~ 289 (967)
T 1wz2_A 232 PETVYGVTNMWVNPNATYVKAKVRR---------------------KDKEETWIVSKEAAYKLSFQ-DREIEVIEEFKGE 289 (967)
T ss_dssp GGGGGGCCEEEECSSSCEEEEEEEC---------------------SSCEEEEEEEHHHHHHHHHS-SCEEEEEEECCSS
T ss_pred chHhhhheEEEECCCCcEEEEEecC---------------------CCcceeeehHHHHHHHHHhh-ccCcEEEEEEEch
Confidence 9999999999999999999987641 01237899999999988754 3468899999999
Q ss_pred cccCCeeecCCCCCcccEEeccCcccccCCCCceeecCCCChhhHHH----------HHHhCCC--------ccccC---
Q 003799 426 DLENCRYVHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVT----------SLKYGLP--------ILSPV--- 484 (794)
Q Consensus 426 ~L~g~~~~~Pl~~~~~pvvi~~~~V~~~~GTG~Vh~aPaHg~~D~~~----------~~~~gl~--------i~~~v--- 484 (794)
+|+|++|.||++++++|| ++++||++++|||+||+|||||++||.+ +++|||| ++++|
T Consensus 290 ~l~G~~~~~P~~~~~ipi-~~~~~V~~~~GTG~V~~~Pah~~~Dy~~~~~~~~~~~~~~k~~l~~~~~~~l~~i~vi~~~ 368 (967)
T 1wz2_A 290 KLIGKYVRNPVSGDEVII-LPAEFVDPDNATGVVMSVPAHAPFDHVALEDLKRETEILEKYDIDPRIVENITYISLIKLE 368 (967)
T ss_dssp TTSSCEEECSSSSCEEEE-EECSSCCSSSTTSCEEECTTSCTTTTTTTSCCSCCSCCCCTTCCCCCCC------------
T ss_pred hhcCCEEECCCCCCceEE-EecccccCCCCcccEEeecCCCHHHHHHHHhhccchhHHHHcCCchhhcccccceeeeecC
Confidence 999999999999999999 6799999999999999999999999985 5788987 55554
Q ss_pred --------------------CC----------------CCccccccCCCCCccccccchHHHHHHHHhcCCccccccccc
Q 003799 485 --------------------DD----------------EGKFTEEAGKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEH 528 (794)
Q Consensus 485 --------------------d~----------------~G~~~~~~~~~~G~~v~~ea~~~ii~~L~~~g~l~~~~~~~h 528 (794)
|+ +|+++ +|+|.|+.+. +|++.|++.|++.|.++....+.|
T Consensus 369 ~~g~~~~~~~~~~~~i~~~~d~~~l~~a~~~~y~~~~~~G~~~--~g~~~G~~v~-ea~~~i~~~L~~~g~l~~~~~~~~ 445 (967)
T 1wz2_A 369 GYGDFPAVEEVNKLGIKSQKDKEKLEQATKTIYKAEYHKGIFK--VPPYEGKPVQ-EVKEAIAKEMLEKGIAEIMYEFAE 445 (967)
T ss_dssp ----CCSSCCTTTSSSCCCSSCTTHHHHTTHHHHHHHHSCBCC--SSSSCSSBHH-HHTTTTHHHHHHHTSEEECCEESS
T ss_pred CccccchhhhhhhccCCCccchHHHHHHHHHhhhccccCceEe--ccCcCCcCHH-HHHHHHHHHHHhCCCceEEEecCC
Confidence 32 67777 6889999996 999999999999999986544333
Q ss_pred ccccccCCCCcEEEc-ccCccccchh--hHHHHHHhhhcCeee-------------------------------------
Q 003799 529 KYPYDWRTKKPTIFR-ATEQWFASVE--GFRQAAMDAIGQVKW------------------------------------- 568 (794)
Q Consensus 529 ~yp~~WRt~~pii~r-~t~QWfi~~~--~~~~~~l~~i~~v~~------------------------------------- 568 (794)
||+||||++|+|++ +++|||++++ .+++.+++.+++++|
T Consensus 446 -~p~~~R~g~~~i~~~~~~qWFi~~~~~~~k~~~l~~~~~~~~~P~~~~~~~~~~l~~l~DW~ISRqr~WG~piP~d~~~ 524 (967)
T 1wz2_A 446 -KNVISRFGNRAVIKIIHDQWFIDYGNPEWKEKARKALERMKILPETRRAQFEAIIDWLDKKACARKIGLGTPLPWDPEW 524 (967)
T ss_dssp -SCCBCSSSSBCEECCCSSCEEEESCCTTHHHHHHHHHTTSCEESSTTHHHHHHHHHSCCEECCCBSSSSSEECTTCTTS
T ss_pred -CceECCCCCEEEEeccCCccceecCchHHHHHHHHhhhccEeeCccccchHHHhhhcccCeeeccCCCCCccCCcCccc
Confidence 89999999999999 6999999886 366666555443322
Q ss_pred -----------------------------------------------------------------------------cCC
Q 003799 569 -----------------------------------------------------------------------------VPP 571 (794)
Q Consensus 569 -----------------------------------------------------------------------------~P~ 571 (794)
+|.
T Consensus 525 ~~~~~~ds~iYv~~~~~~~~~~~~~~~~g~~~~~l~~~~~d~~~~~~~~~g~~~~~~~~sG~~~~~~~~~~~~~~~w~P~ 604 (967)
T 1wz2_A 525 VIESLSDSTIYMAYYTISRHINKLRQEGKLDPEKLTPEFFDYIFLEEFSEDKEKELEKKTGIPAEIIHEMKEEFEYWYPL 604 (967)
T ss_dssp EECHHHHTTSTHHHHHHHHHHHHHHHTTCCCGGGCCHHHHHHTTTSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHCSC
T ss_pred ccccCCCCceEeehhhhhhHHHHHHHhcCCChHHcCcccceeeccCccccCccccchhhcCCCHHHHhhhHHHHHhhCCC
Confidence 233
Q ss_pred C----------------------------------------------------------CCCCCCCchhhhhhh-hcCCC
Q 003799 572 Q----------------------------------------------------------EAPGYGADVLRLWVS-SVDYT 592 (794)
Q Consensus 572 ~----------------------------------------------------------~~~~yGaD~lRl~la-s~~~~ 592 (794)
+ ++++||+|++|||++ +++++
T Consensus 605 Di~~~G~D~i~~H~~~~~~~~~a~~~~~~~pk~v~~~G~v~~~G~KMSKS~GNvv~p~d~i~~yGaDalR~~ll~~~~~~ 684 (967)
T 1wz2_A 605 DWRCSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAVNGFGTLEGQKMSKSKGNVLNFIDAIEENGADVVRLYIMSLAEHD 684 (967)
T ss_dssp SEEEEEGGGTTTHHHHHHHHHHHHSCSTTSCCCEEEECCEEESSSCCCTTTCCCCBHHHHHHTTCHHHHHHHHHHHCCTT
T ss_pred eEEeeeeCcchhHHHHHHHHHHHHcCcccccceEEEeeEEeeCCEEccccccCCCCHHHHHHHhChHHHHHHHHhCCCCC
Confidence 3 234899999999996 67899
Q ss_pred CceecChHHHHHHHHHHHHHHhHHHHHHhcccCCCCCCCcCCCCCChhhHHHHHHHHHHHHHHHHHHhcccHHHHHHHHH
Q 003799 593 GDVMIGPQVLRQMSDIYRKLRGTLRYLLGNLHDWRVGNSISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQ 672 (794)
Q Consensus 593 ~Di~~s~~~l~~~~~~~~kl~Nt~rfll~nl~~~~~~~~~~~~~l~~~D~~il~~l~~lv~~v~~~~e~y~f~~ai~~l~ 672 (794)
+|++|+++.++++.++++|+||++++++++. .+ ....+..+|+|+++++++++++++++|++|+|++|++.++
T Consensus 685 ~d~~fs~~~~~~~~~~l~rl~n~~~~~~~~~---~~----~~~~~~~~D~~il~~l~~~~~~v~~~~e~~~f~~A~~~~~ 757 (967)
T 1wz2_A 685 SDFDWRRKEVGKLRKQIERFYELISQFAEYE---VK----GNVELKDIDRWMLHRLNKAIKETTNALEEFRTRTAVQWAF 757 (967)
T ss_dssp CCEEECHHHHHHHHHHHHHHHHHHHHHHSSC---CC----CCCCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred CCcccCHHHHHHHHHHHHHHHHHHHHHhcCC---CC----CcccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 9999999999999999999999999986541 11 1234678999999999999999999999999999999887
Q ss_pred HHHHHhhhHHHHHhhccccccCCCChHhHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhCCCCccccCCCCCCceeec
Q 003799 673 RFIIVDLSNFYFDVAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAAEFVFES 752 (794)
Q Consensus 673 ~f~~~~lsn~Yle~~K~rly~~~~d~~~r~s~~~vL~~iL~~l~~lLaP~~P~~aEEiw~~L~~~~~~~~~~~~~sV~~~ 752 (794)
.|+++ .+|+|++.+|++ .+++++++|+++|+.+++||||||||+|||||++|+. .+|||.+
T Consensus 758 ~~l~~-~~n~Yi~~~k~~---------~~~~~~~~l~~~l~~l~~LLaP~~P~~aEeiw~~L~~---------~~sv~~~ 818 (967)
T 1wz2_A 758 YSIMN-DLRWYLRRTEGR---------DDEAKRYVLRTLADVWVRLMAPFTPHICEELWEKLGG---------EGFVSLA 818 (967)
T ss_dssp HHHHH-HHHHHHHHTTTC---------CCHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHSSC---------CSCGGGS
T ss_pred HHHHH-HHHHHHHhccch---------hHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhcCC---------CCceecc
Confidence 66665 579999998853 1347788999999999999999999999999999974 2689999
Q ss_pred CCCCCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhcCC
Q 003799 753 KWPVLDEKWRTFPVGEIYFWGKILEVIVVVTYLNETEGF 791 (794)
Q Consensus 753 ~wP~~~e~~~~~~~~~~~~~~~i~~lR~~v~~~~e~~~~ 791 (794)
+||++++.+.+ ++++..++.++++++.++++++.+++
T Consensus 819 ~wP~~~~~~~d--~~~~~~~~~~~~~~~~vr~~~~~~~~ 855 (967)
T 1wz2_A 819 KWPEPVEEWWN--ETIEAEEEFIRSVMEDIKEIIEVAKI 855 (967)
T ss_dssp CCCCCCSSCCC--HHHHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred CCCCCCcccCC--HHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999987665 78888999999999999999999886
No 5
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=100.00 E-value=1e-98 Score=913.31 Aligned_cols=562 Identities=21% Similarity=0.328 Sum_probs=466.0
Q ss_pred CCCCcccccHHHHHHHhhcCcchhcccc-CCCCcEEEEcCCCCCCCcccchHHHhHHHHHHHHHHHHhCCCeeEEecccc
Q 003799 119 MRANALVREPEIHKLWDDHQVFLRVADK-NDGENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWD 197 (794)
Q Consensus 119 ~r~n~~~~E~~~~~~W~~~~~~~~~~~~-~~~~~f~i~~~pPy~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G~D 197 (794)
+.+|+..+|++||++|+++++|++..+. .++++|+|++|||||||.|||||++|++++|+++||+||+||+|++++|||
T Consensus 2 ~~~~~~~~E~~~~~~W~~~~~f~~~~~~~~~~~~~~i~~~~Py~nG~lHiGH~~~~~~~D~i~R~~rm~G~~V~~~~G~D 81 (810)
T 1wkb_A 2 AELNFKAIEEKWQKRWLEAKIFEPNIRDKPKEKKFYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAWH 81 (810)
T ss_dssp --CCCHHHHHHHHHHHHHTTTTCCCGGGSCGGGEEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHHTCEEECCCCBB
T ss_pred CCCCHHHHHHHHHHHHHhCCCcccCchhcCCCCcEEEEeCCCCCCCCCccccchhHHHHHHHHHHHHcCCCccCcCCccC
Confidence 4578899999999999999999987542 347899999999999999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHhhchh--h------hhcCCCHHHHH--HHHHHHHHHHHHHHHHHHHHcCCccCCCCccccCC--hHHHH
Q 003799 198 CHGLPIELKVLQSLDE--D------AKKDLTPSKLR--AKAAKFAKATVKAQMASFKRYGVWADWNNPYLTLD--PEYEA 265 (794)
Q Consensus 198 ~hGlpie~~~~k~~~~--~------~~~~~~~~~~~--~~~~~~a~~~~~~~~~~~~~lGi~~dwd~~~~T~d--~~~~~ 265 (794)
|||+|||..+++.... . +..+++..++. ..|++|++++.+.|+++|++||++.||+++|+|+| |.|++
T Consensus 82 ~~G~pie~~a~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lgi~~Dw~~~~~T~d~~~~~~~ 161 (810)
T 1wkb_A 82 ITGSPIVGIAERIKNRDPKTIWIYRDVYKVPEEILWTFEDPINIVKYFMKAAKETFIRAGFSVDWSREFYTTSLFPPFSK 161 (810)
T ss_dssp CCBSHHHHHHHHHHTTCHHHHHHHHHTSCCCHHHHHGGGSHHHHHHHHHHHHHHHHHHTTCCCCGGGCCBCSTTSHHHHH
T ss_pred CCCChHHHHHHHhcccCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeEEecCCceEecCCchHHHH
Confidence 9999999987753210 0 11244554443 36899999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHcCCeeecccCceeccCCCccccccccccCCc-ccccccceeEEeccCCCCcccccccccCCccceeccC
Q 003799 266 AQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAEAELEYPEG-HVSRSIYAVFRMVSAPPSTSGLLNEFLPDLGLAVWTT 344 (794)
Q Consensus 266 ~v~~~f~~L~~kGlIy~~~~~v~w~~~~~t~Lae~Evey~e~-~~~~~~~v~F~l~~~~~~~~~~l~~~~~~~~l~iwTT 344 (794)
.++++|.+|+++|+||++.++|+|||.|+|+|||+||+|.++ ..+...+|+|++.+.. .+.+++||||
T Consensus 162 ~v~~~f~~L~~~Gliy~~~~~v~~~~~~~t~La~~ev~~~~~~~~~~~~~v~f~~~~~~-----------~~~~l~v~TT 230 (810)
T 1wkb_A 162 FIEWQFWKLKEKGYIVKGAHRVRWDPVVGTPLGDHDLMEGEDVPILDYIIIKFELRENG-----------EVIYLPAATL 230 (810)
T ss_dssp HHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCTTCCSBCSSCCEEEEEEEEEECCSSC-----------SCCEEEEEES
T ss_pred HHHHHHHHHHHCCCEEECCeeeeccCCcCCCccHHHHhcCCCCccceeEEEEEEccCCC-----------CceEEEEEcC
Confidence 999999999999999999999999999999999999998542 1233356788875321 1368999999
Q ss_pred CCCccccccEEEECCCcceeeeeecccccCCCCCcCCCCCCCCCcccCCcceEeeecccchHHHHHhcCCceEEEeeecc
Q 003799 345 TPWTVPANAAVAVNAKLQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFIIVASDLVPTLEAKWGTKLVIKKTLAG 424 (794)
Q Consensus 345 ~PwTi~~n~av~v~p~~~Y~~v~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~G 424 (794)
||||||||+||||||++.|+++++.+ +...+.+|+++++++++..+ +..++++++++|
T Consensus 231 rP~Tl~g~~av~v~P~~~y~~~~~~~---------------------~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~G 288 (810)
T 1wkb_A 231 RPETVYGVTNMWVNPNATYVKAKVRR---------------------KDKEETWIVSKEAAYKLSFQ-DREIEVIEEFKG 288 (810)
T ss_dssp CGGGGGGCCEEEECTTSCEEEEEEEE---------------------TTEEEEEEEEHHHHHHHTTS-SCEEEEEEECTT
T ss_pred CchHhhhhhEEEECCCCcEEEEEecC---------------------CCcceeeeeHHHHHHHHHhh-hcceEEEEEEEc
Confidence 99999999999999999999887641 01237899999888877443 345788999999
Q ss_pred CcccCCeeecCCCCCcccEEeccCcccccCCCCceeecCCCChhhHHH----------HHHhCCC--------ccccCCC
Q 003799 425 SDLENCRYVHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVT----------SLKYGLP--------ILSPVDD 486 (794)
Q Consensus 425 ~~L~g~~~~~Pl~~~~~pvvi~~~~V~~~~GTG~Vh~aPaHg~~D~~~----------~~~~gl~--------i~~~vd~ 486 (794)
.+|+|+++.||++++++|| +.++||++++|||+||+|||||++||.+ |++|||| ++++|+.
T Consensus 289 ~~l~g~~~~~P~~~~~ipi-~~~~~V~~~~GTG~V~~~Pah~~~D~~~~~~~~~~~~~~~k~~l~~~~~~~l~~~~vi~~ 367 (810)
T 1wkb_A 289 EKLIGKYVRNPVSGDEVII-LPAEFVDPDNATGVVMSVPAHAPFDHVALEDLKRETEILEKYDIDPRIVENITYISLIKL 367 (810)
T ss_dssp TTTTTCEEECSSSCCEEEE-EECTTSCTTSTTSCEEECTTTCHHHHHHHCCCSCCSCCCTTCSCCCCCC-----------
T ss_pred hhhcCCEEECCCCCCeeEE-EecCcccCCCCceeEEeCCCCCHHHHHHHHhhccchhHHHHcCCChhhcccccceeeecc
Confidence 9999999999999999999 5699999999999999999999999986 4788987 6666521
Q ss_pred ---------------------------------------CCccccccCCCCCccccccchHHHHHHHHhcCCcccccccc
Q 003799 487 ---------------------------------------EGKFTEEAGKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYE 527 (794)
Q Consensus 487 ---------------------------------------~G~~~~~~~~~~G~~v~~ea~~~ii~~L~~~g~l~~~~~~~ 527 (794)
+|+++ +|+|.|+.+. +|++.|++.|++.|.++....+.
T Consensus 368 ~~~~~~~~~~~~~~~~i~~~~d~~~~~~~~~~~~~~~~~~G~~~--~g~~~G~~v~-~a~~~i~~~L~~~g~~~~~~~~~ 444 (810)
T 1wkb_A 368 EGYGDFPAVEEVNKLGIKSQKDKEKLEQATKTIYKAEYHKGIFK--VPPYEGKPVQ-EVKEAIAKEMLEKGIAEIMYEFA 444 (810)
T ss_dssp -----CCTTCCSGGGTSCCCTTCSCTHHHHHHHHHHHHHSCEEC--SGGGTTEEHH-HHHHHHHHHHHTTTSEEEEEEES
T ss_pred CCccccchhhhhhhccCCCcchhhhhhhhhhhhhhccccCceEe--ccCcCCeEHH-HhHHHHHHHHHhCCCeeeEEecC
Confidence 57776 6789999995 99999999999999998766555
Q ss_pred cccccccCCCCcEEEc-ccCccccchhh--HHHHHHhhhcCeee------------------------------------
Q 003799 528 HKYPYDWRTKKPTIFR-ATEQWFASVEG--FRQAAMDAIGQVKW------------------------------------ 568 (794)
Q Consensus 528 h~yp~~WRt~~pii~r-~t~QWfi~~~~--~~~~~l~~i~~v~~------------------------------------ 568 (794)
| ||+||||++|++++ +++|||+++++ +++++++.++++.|
T Consensus 445 ~-~~~~~r~g~~vi~~~~~~qwF~~~~~~~~~~~~l~~~~~~~~~P~~~~~~~~~~l~~l~Dw~ISRq~~WG~piP~d~~ 523 (810)
T 1wkb_A 445 E-KNVISRFGNRAVIKIIHDQWFIDYGNPEWKEKARKALERMKILPETRRAQFEAIIDWLDKKACARKIGLGTPLPWDPE 523 (810)
T ss_dssp S-SCCBCTTSCBCEEEEEEEEEEECTTCHHHHHHHHHHHHTSEEESGGGHHHHHHHHHHCCCEECEESSSBSCEETTEEE
T ss_pred C-CCcCCCCCCEEEEEecCCceeEecChHHHHHHHHhhhcccEEECcchhchHHHHhhcccCccccccCCCCCcCCcCcc
Confidence 4 89999999999999 79999999874 66666554433222
Q ss_pred ------------------------------------------------------------------------------cC
Q 003799 569 ------------------------------------------------------------------------------VP 570 (794)
Q Consensus 569 ------------------------------------------------------------------------------~P 570 (794)
+|
T Consensus 524 ~~~~~~~~~~iYv~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~g~~~~~~~~sg~~~~~~~~~~~~~~~~~p 603 (810)
T 1wkb_A 524 WVIESLSDSTIYMAYYTISRHINKLRQEGKLDPEKLTPEFFDYIFLEEFSEDKEKELEKKTGIPAEIIHEMKEEFEYWYP 603 (810)
T ss_dssp EEECTTTSSSSHHHHHHHHHHHHHHHHTTCCCGGGCCHHHHHHHHHSCCCHHHHHHHHHHHSCCHHHHHHHHHHHHHHCS
T ss_pred eecccCCCCceeeehhhhHHHHHHhHhhcCCCHHHcCccceeeeeccccccCccccchhhhCCCHHHHHhhHHHHHhhCC
Confidence 23
Q ss_pred CC----------------------------------------------------------CCCCCCCchhhhhhh-hcCC
Q 003799 571 PQ----------------------------------------------------------EAPGYGADVLRLWVS-SVDY 591 (794)
Q Consensus 571 ~~----------------------------------------------------------~~~~yGaD~lRl~la-s~~~ 591 (794)
.+ ++++||+|++|||++ ++++
T Consensus 604 ~Di~~~G~D~~~~H~~~~~~~~~~~~~~~~~pk~v~~~G~v~~~G~KMSKS~GNvv~p~dli~~yGaDalR~~ll~~~~~ 683 (810)
T 1wkb_A 604 LDWRCSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAVNGFGTLEGQKMSKSKGNVLNFIDAIEENGADVVRLYIMSLAEH 683 (810)
T ss_dssp CSEEEEEGGGTTTHHHHHHHHHHHHSCGGGSCCEEEEECCEEETTBCCCTTTTCCCBHHHHHHHHCHHHHHHHHHHHCCT
T ss_pred ceEEeecccccccHHHHHHHHHHHHcCccccccEEEEEeEEEeCCeehhhcCCCcCCHHHHHHHcChHHHHHHHHhcCCC
Confidence 33 224799999999997 6789
Q ss_pred CCceecChHHHHHHHHHHHHHHhHHHHHHhcccCCCCCCCcCCCCCChhhHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Q 003799 592 TGDVMIGPQVLRQMSDIYRKLRGTLRYLLGNLHDWRVGNSISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQII 671 (794)
Q Consensus 592 ~~Di~~s~~~l~~~~~~~~kl~Nt~rfll~nl~~~~~~~~~~~~~l~~~D~~il~~l~~lv~~v~~~~e~y~f~~ai~~l 671 (794)
.+|++|+++.++++.++++|++|+++++.++. .+ ....+...|+|+++++++++++++++|++|+|++|++.+
T Consensus 684 ~~d~~fs~~~~~~~~~~l~rl~n~~~~~~~~~---~~----~~~~~~~~d~~ll~~l~~~~~~v~~~~~~~~~~~a~~~~ 756 (810)
T 1wkb_A 684 DSDFDWRRKEVGKLRKQIERFYELISQFAEYE---VK----GNVELKDIDRWMLHRLNKAIKETTNALEEFRTRTAVQWA 756 (810)
T ss_dssp TCCEEECHHHHHHHHHHHHHHHHHHHHHHTCC---CC----SCCCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCcccCHHHHHHHHHHHHHHHHHHHHHHhcc---Cc----ccccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 99999999999999999999999999986541 11 123456789999999999999999999999999999977
Q ss_pred HHHHHHhhhHHHHHhhccccccCCCChHhHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhCC
Q 003799 672 QRFIIVDLSNFYFDVAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLP 735 (794)
Q Consensus 672 ~~f~~~~lsn~Yle~~K~rly~~~~d~~~r~s~~~vL~~iL~~l~~lLaP~~P~~aEEiw~~L~ 735 (794)
+.++++ .+|+|++.+|++ + +.+.+++|+++|+.+++||+|||||+|||||++|+
T Consensus 757 ~~~l~~-~~n~yi~~~k~~------~---~~~~~~~l~~~l~~l~~lLaP~~P~~aEelw~~Lg 810 (810)
T 1wkb_A 757 FYSIMN-DLRWYLRRTEGR------D---DEAKRYVLRTLADVWVRLMAPFTPHICEELWEKLG 810 (810)
T ss_dssp THHHHH-HHHHHHHHTTTC------C---CHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHCC
T ss_pred HHHHHH-HHHHHHHHhcCc------c---hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcC
Confidence 544445 578999998853 1 12227899999999999999999999999999985
No 6
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=100.00 E-value=2.4e-96 Score=891.22 Aligned_cols=592 Identities=22% Similarity=0.330 Sum_probs=446.1
Q ss_pred CCCCcccccHHHHHHHhhcCcchhccccCCCCcEEEEcCCCCCCCcccchHHHhHHHHHHHHHHHHhCCCeeEEeccccC
Q 003799 119 MRANALVREPEIHKLWDDHQVFLRVADKNDGENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDC 198 (794)
Q Consensus 119 ~r~n~~~~E~~~~~~W~~~~~~~~~~~~~~~~~f~i~~~pPy~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G~D~ 198 (794)
||+|+..+|++||++|+++++|++...+.++++|++++|||||||.|||||++|++++|+++||+||+||+|+|++||||
T Consensus 2 ~~y~~~~iE~kw~~~W~~~~~f~~~~~~~~~~k~~v~~~~Py~nG~lHiGHa~~~~~~Dvl~Ry~rm~G~~V~~~~G~D~ 81 (878)
T 2v0c_A 2 EKYNPHAIEAKWQRFWEEKGFMKAKDLPGGRGKQYVLVMFPYPSGDLHMGHLKNYTMGDVLARFRRMQGYEVLHPMGWDA 81 (878)
T ss_dssp CCCCCTTHHHHHHHHHHHHTTTCCCSCCC---EEEEEECCCCCSSCCBHHHHHHHHHHHHHHHHHHHHTCEEECCCCBCC
T ss_pred CCCCHHHHHHHHHHHHHHcCCcccCcccCCCCCEEEECCCCCCCCCcchhhhHHHHHHHHHHHHHHhcCCceEeecccCc
Confidence 47999999999999999999999875234578899999999999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHhhchhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCCccccCChHHHHHHHHHHHHHHHcC
Q 003799 199 HGLPIELKVLQSLDEDAKKDLTPSKLRAKAAKFAKATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQG 278 (794)
Q Consensus 199 hGlpie~~~~k~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~lGi~~dwd~~~~T~d~~~~~~v~~~f~~L~~kG 278 (794)
||+|||.++++ .+.+|. +|++++++.++++|++||++.||+++|+|+++.|.+.++++|.+|+++|
T Consensus 82 ~Glpie~~a~k-------~g~~~~-------~~~~~~~~~~~~~~~~LGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kG 147 (878)
T 2v0c_A 82 FGLPAENAALK-------FGVHPK-------DWTYANIRQAKESLRLMGILYDWDREVTTCEPEYYRWNQWIFLKMWEKG 147 (878)
T ss_dssp SSHHHHHHHHH-------TTCCHH-------HHHHHHHHHHHHHHHHTTCCCCGGGCCBTTSHHHHHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHH-------cCCCHH-------HHHHHHHHHHHHHHHHhCCccCcCCCeecCCHHHHHHHHHHHHHHHHCC
Confidence 99999999874 456664 5699999999999999999999999999999999999999999999999
Q ss_pred CeeecccCceeccCCCccccccccccCCccccc-cc--ce-------eEEeccCCCCccccccc----------------
Q 003799 279 YIYRGKKPVHWSPSSRTALAEAELEYPEGHVSR-SI--YA-------VFRMVSAPPSTSGLLNE---------------- 332 (794)
Q Consensus 279 lIy~~~~~v~w~~~~~t~Lae~Evey~e~~~~~-~~--~v-------~F~l~~~~~~~~~~l~~---------------- 332 (794)
+||++.++|+|||.|+|+|||+||++ |+|.. |. ++ +|+++++++.+.+.++.
T Consensus 148 liY~~~~~v~w~p~~~t~La~~ev~~--g~~~~~~~~~~~~~~~~~~f~~l~~~~~~L~~~l~~~~~p~~~~~~~~~wi~ 225 (878)
T 2v0c_A 148 LAYRAKGLVNWCPKCQTVLANEQVVE--GRCWRHEDTPVEKRELEQWYLRITAYAERLLKDLEGLNWPEKVKAMQRAWIG 225 (878)
T ss_dssp CEEEEEEEEEEETTTTEEECGGGEET--TEESSCTTCBCEEEEEEEEEECGGGGHHHHHHTTTTCBSCHHHHHHHHHHHC
T ss_pred CEEEcceeEEEeCCCCCCcCHHHHhc--CCCcccCCCceEEEecceeeEecchhHHHHHHHhhhcCCCHHHHHHHHHHhc
Confidence 99999999999999999999999984 55544 32 32 35666544322222111
Q ss_pred --------c-c--CCccceeccCCCCccccccEEEECCCcceeeeeecccccCCCCCcCCCCCCCCCcccCCcceEeeec
Q 003799 333 --------F-L--PDLGLAVWTTTPWTVPANAAVAVNAKLQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFIIVA 401 (794)
Q Consensus 333 --------~-~--~~~~l~iwTT~PwTi~~n~av~v~p~~~Y~~v~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~iv~ 401 (794)
+ + .+.+++||||||||||||+||+|||++.|+.+.+.. +.....
T Consensus 226 ~s~g~~v~f~~~~~~~~l~v~TTrP~Tl~g~~~vav~pe~~~~~~~~~~-------------------------~~~~~~ 280 (878)
T 2v0c_A 226 RSEGAEILFPVEGKEVRIPVFTTRPDTLFGATFLVLAPEHPLTLELAAP-------------------------EKREEV 280 (878)
T ss_dssp EEEEEEEEEEBTTSSCEEEEEESCGGGGGGCCEEEECTTSHHHHHHSCG-------------------------GGHHHH
T ss_pred cccCceEEEEecCCCceEEEEeCCchhhhCcEEEEEcCCCeeeehhccc-------------------------hhHHHH
Confidence 0 1 246899999999999999999999999998554321 111111
Q ss_pred ccchHHHHHhcCCceEE-EeeeccCcccCCeeecCCCCCcccEEeccCcccccCCCCceeecCCCChhhHHHHHHhCCCc
Q 003799 402 SDLVPTLEAKWGTKLVI-KKTLAGSDLENCRYVHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPI 480 (794)
Q Consensus 402 ~~~~~~~~~~~~~~~~~-~~~~~G~~L~g~~~~~Pl~~~~~pvvi~~~~V~~~~GTG~Vh~aPaHg~~D~~~~~~~gl~i 480 (794)
.+.++.+......+-.+ ..+++|. ++|+++.||++++++||| .++||++++|||+||+|||||++||++|++||||+
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~G~-~~g~~~~~P~~~~~ipi~-~~~~V~~~~GTG~V~~~PaHd~~D~~~~~k~~L~i 358 (878)
T 2v0c_A 281 LAYVEAAKRKTEIERQAEGREKTGV-FLGAYALNPATGERIPIW-TADYVLFGYGTGAIMAVPAHDQRDYEFARKFGLPI 358 (878)
T ss_dssp HHHHHHHHTSCHHHHHCSSSCCCCE-EEEEEEECTTTCCEEEEE-ECTTSCTTSTTSEEEECTTTCHHHHHHHHHHTCCC
T ss_pred HHHHHHHhhhhhhhhhhccceeeeE-ecCcEEECCCCCCEeEEE-EeCcccCCCCCceEEeCCCCCHHHHHHHHHcCCCc
Confidence 22222222111111111 3567787 899999999999999995 58999999999999999999999999999999999
Q ss_pred cccCCC---------CCccccc-----cCCCCCccccccchHHHHHHHHhcCCccccccc--------ccccccccCCCC
Q 003799 481 LSPVDD---------EGKFTEE-----AGKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPY--------EHKYPYDWRTKK 538 (794)
Q Consensus 481 ~~~vd~---------~G~~~~~-----~~~~~G~~v~~ea~~~ii~~L~~~g~l~~~~~~--------~h~yp~~WRt~~ 538 (794)
+++|+. +|.|+.+ ++.|.|+++. +|+++|++.|++.|++.+...| +++| |+++.
T Consensus 359 ~~vi~~~~~~~~~~~~~~~~~~g~~~ns~~~~Gl~~~-eA~~~Ii~~L~~~g~~~~~v~~rlrDW~ISRQR~---WG~PI 434 (878)
T 2v0c_A 359 KKVIERPGEPLPEPLERAYEEPGIMVNSGPFDGTESE-EGKRKVIAWLEEKGLGKGRVTYRLRDWLISRQRY---WGTPI 434 (878)
T ss_dssp CCCEECSSSCCCSSCSSCCCSCCEECSSGGGTTCBHH-HHHHHHHHHHHHHTSEEEEEEESCCCEECEESCS---SSEEC
T ss_pred eeeeCCCCccccccccccccCCeeEecCCCCCCcCHH-HHHHHHHHHHHHCCCCCCceEEecccchhhcccc---cCCcc
Confidence 999974 3466654 4789999995 9999999999999987665555 4667 88888
Q ss_pred cEEEccc---------------------------------------------------------Cccccch---------
Q 003799 539 PTIFRAT---------------------------------------------------------EQWFASV--------- 552 (794)
Q Consensus 539 pii~r~t---------------------------------------------------------~QWfi~~--------- 552 (794)
|++|+.. |+||.+.
T Consensus 435 Pi~~~~~~~~v~v~~~~lpv~lp~~~~~~~~~~~g~~pl~~~~~~~~~~cp~cg~~~~retDtmDtwfdSsw~~~~~~~p 514 (878)
T 2v0c_A 435 PMVHCEACGVVPVPEEELPVLLPDLKDVEDIRPKGKSPLEAHPEFYETTCPKCGGPAKRDTDTMDTFFDSSWYYLRYTDP 514 (878)
T ss_dssp CEEEETTTEEEECCGGGCCCCCCCCCCHHHHSCSSSCGGGGCHHHHEEECTTTCSEEEECCCEECHHHHHTSHHHHTTST
T ss_pred cEEEECCCCeEecCHHHccccccchhhhhccccCCCChhhhhHhhcCCcCCCCCCcceeccccccccccccchhhhccCc
Confidence 8876421 2232111
Q ss_pred ---------hh-------------------------HH------------------------------------------
Q 003799 553 ---------EG-------------------------FR------------------------------------------ 556 (794)
Q Consensus 553 ---------~~-------------------------~~------------------------------------------ 556 (794)
+. |=
T Consensus 515 ~~~~~~~~~~~~~~~~P~D~yi~G~d~~ilhl~y~r~~~~~l~~~g~~~~~~Pfk~l~~~G~vl~~~~~~~~~~~~~~~~ 594 (878)
T 2v0c_A 515 HNDRLPFDPEKANAWMPVDQYIGGVEHAVLHLLYSRFFTKFLHDLGMVKVEEPFQGLFTQGMVLAWTDFGPVEVEGSVVR 594 (878)
T ss_dssp TCSSSSCCHHHHHHHCSBSEEECCGGGTTTHHHHHHHHHHHHHHTTSCSCSCSBSBEECCCCEEEEEEEEEEEEETTEEE
T ss_pred cccccccCHHHHccCCCCeEEEechHHHHHHHHHHHHHHHHHHHhhcccCCCchHhheecceEeccceecccccccccee
Confidence 00 00
Q ss_pred -----------------------------------------HHHHhhhcCeeecCCCCCCCCCCchhhhhhhh-cCCCCc
Q 003799 557 -----------------------------------------QAAMDAIGQVKWVPPQEAPGYGADVLRLWVSS-VDYTGD 594 (794)
Q Consensus 557 -----------------------------------------~~~l~~i~~v~~~P~~~~~~yGaD~lRl~las-~~~~~D 594 (794)
+||+|+.+|+.. |.+++++||||++|||+++ +++.+|
T Consensus 595 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~KMSKSkGNvVd-P~diI~~yGADalRl~ll~~~~~~~D 673 (878)
T 2v0c_A 595 LPEPTRIRLEIPESALSLEDVRKMGAELRPHEDGTLHLWKPAVMSKSKGNGVM-VGPFVKEQGADIARITILFAAPPENE 673 (878)
T ss_dssp CCHHHHHHHTCSCSEEEHHHHHHTTCEEEECTTSSEEEEEEEECSGGGTCCCB-HHHHHHHSCHHHHHHHHHHHSCTTSC
T ss_pred ccccccccccccCchhhhhccccccceeeccCCCCchhhhHHHhhccCCCccc-HHHHHHHcCccHHHHHHhccCCCCCC
Confidence 133333333333 3334568999999999997 799999
Q ss_pred eecChHHHHHHHHHHHHHHhHHHHHHhcccCCCCCCCcCCCCCChhhHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Q 003799 595 VMIGPQVLRQMSDIYRKLRGTLRYLLGNLHDWRVGNSISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRF 674 (794)
Q Consensus 595 i~~s~~~l~~~~~~~~kl~Nt~rfll~nl~~~~~~~~~~~~~l~~~D~~il~~l~~lv~~v~~~~e~y~f~~ai~~l~~f 674 (794)
++|+++.++++.++++|+||.+++...++.. .. ..++...+...|+|+++++++++++++++|++|+|++|++.+++|
T Consensus 674 ~~fs~~~v~~~~~~l~Rl~n~~~~~~~~~~~-~~-~~~~~~~l~~~D~~ll~~l~~~i~~v~~~~e~~~f~~Ai~~l~~f 751 (878)
T 2v0c_A 674 MVWTEEGVQGAWRFLNRIYRRVAEDREALLE-TS-GVFQAEALEGKDRELYGKLHETLKKVTEDLEALRFNTAIAALMEF 751 (878)
T ss_dssp EEECHHHHHHHHHHHHHHHHHHHHHHHHHHT-CC-CCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ceeCHHHHHHHHHHHHHHHHHHHHHHhcccc-cc-cccCcccCCHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 9999999999999999999999876654321 00 112233567899999999999999999999999999999999999
Q ss_pred HHHhhhHHHHHhhccccccCCCChHhHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhCCCCccccCCCCCCceeecCC
Q 003799 675 IIVDLSNFYFDVAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAAEFVFESKW 754 (794)
Q Consensus 675 ~~~~lsn~Yle~~K~rly~~~~d~~~r~s~~~vL~~iL~~l~~lLaP~~P~~aEEiw~~L~~~~~~~~~~~~~sV~~~~w 754 (794)
++ +++ .|.+. +. .+++|+++|+.+++||+|||||+|||||++|+ . +||+.++|
T Consensus 752 ~~-~l~-k~~~~-------~~--------~~~~l~~~l~~l~~LLaPf~P~~aEElw~~Lg-~---------~sv~~~~w 804 (878)
T 2v0c_A 752 LN-ALY-EYRKD-------RP--------VTPVYRTAIRYYLQMLFPFAPHLAEELWHWFW-P---------DSLFEAGW 804 (878)
T ss_dssp HH-HHH-HHHHH-------CC--------SCHHHHHHHHHHHHHHTTTSHHHHHHHHHHHC-S---------SCGGGSCC
T ss_pred HH-HHh-hhccc-------ch--------hHHHHHHHHHHHHHHHcccchHHHHHHHHHcC-C---------CceeecCC
Confidence 96 465 45442 11 12579999999999999999999999999997 3 58999999
Q ss_pred CCCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhcCCC
Q 003799 755 PVLDEKWRTFPVGEIYFWGKILEVIVVVTYLNETEGFS 792 (794)
Q Consensus 755 P~~~e~~~~~~~~~~~~~~~i~~lR~~v~~~~e~~~~~ 792 (794)
|++++.+.. ++.++.++++|+.++..++..+..
T Consensus 805 P~~d~~~l~-----~~~~~~~vqvngkvR~~i~v~~~~ 837 (878)
T 2v0c_A 805 PELDEKALE-----KDVVEVAVQVNGAVAGTIHIPKDA 837 (878)
T ss_dssp CCCCGGGGC-----------------------------
T ss_pred CCCCHHHHH-----HHHHHHHHhhHHHHHHHcccCcCC
Confidence 999876543 456889999999999888876643
No 7
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=100.00 E-value=1.6e-94 Score=868.67 Aligned_cols=562 Identities=22% Similarity=0.345 Sum_probs=428.1
Q ss_pred CCCCCcccccHHHHHHHhhcCcchhccccCCCCcEEEEcCCCCCCCcccchHHHhHHHHHHHHHHHHhCCCeeEEecccc
Q 003799 118 GMRANALVREPEIHKLWDDHQVFLRVADKNDGENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWD 197 (794)
Q Consensus 118 ~~r~n~~~~E~~~~~~W~~~~~~~~~~~~~~~~~f~i~~~pPy~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G~D 197 (794)
++++|+..+|++||++|+++++|+...+ .++++|++++|||||||.|||||++|++++|+++||+||+||+|++++|||
T Consensus 22 ~~~y~~~~iE~kw~~~W~~~~~f~~~~~-~~~~~~~v~~~~PypnG~lHiGHa~~~~~~DvlaRy~rm~G~~V~~~~G~D 100 (880)
T 4arc_A 22 QEQYRPEEIESKVQLHWDEKRTFEVTED-ESKEKYYCLSMLPYPSGRLHMGHVRNYTIGDVIARYQRMLGKNVLQPIGWD 100 (880)
T ss_dssp CSSCCHHHHHHHHHHHHHHTTTTCCCCC-TTSCEEEEEECCCCCCSSCCHHHHHHHHHHHHHHHHHHHTTCEEECCCEEC
T ss_pred cccCChHHHHHHHHHHHHhcCCcccCCc-CCCCCEEEEcCCCCCCCCcchhhhHHHHHHHHHHHHHHHcCCceEEecCcc
Confidence 5578999999999999999999997643 467899999999999999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHhhchhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCCccccCChHHHHHHHHHHHHHHHc
Q 003799 198 CHGLPIELKVLQSLDEDAKKDLTPSKLRAKAAKFAKATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQ 277 (794)
Q Consensus 198 ~hGlpie~~~~k~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~lGi~~dwd~~~~T~d~~~~~~v~~~f~~L~~k 277 (794)
|||+|||..+. +.+.+|.+ |+.++++.++++|++||++.||+++++|+||.|.+.++++|.+|+++
T Consensus 101 ~~Glpie~~a~-------~~g~~p~~-------~~~~~i~~~~~~l~~LGis~Dw~~~~~T~d~~~~~~v~~~f~~L~ek 166 (880)
T 4arc_A 101 AFGLPAEGAAV-------KNNTAPAP-------WTYDNIAYMKNQLKMLGFGYDWSRELATCTPEYYRWEQKFFTELYKK 166 (880)
T ss_dssp CCSTHHHHHHH-------HTTSCHHH-------HHHHHHHHHHHHHHHTTCCCCGGGCEETTSHHHHHHHHHHHHHHHHT
T ss_pred ccCcHHHHHHH-------HcCCCHHH-------HHHHHHHHHHHHHHHhCCCcCCCCCEEcCCHHHHHHHHHHHHHHHHC
Confidence 99999999887 34566644 58899999999999999999999999999999999999999999999
Q ss_pred CCeeecccCceeccCCCccccccccccCCcccccccc---------eeEEeccCCCCcccccccc---------------
Q 003799 278 GYIYRGKKPVHWSPSSRTALAEAELEYPEGHVSRSIY---------AVFRMVSAPPSTSGLLNEF--------------- 333 (794)
Q Consensus 278 GlIy~~~~~v~w~~~~~t~Lae~Evey~e~~~~~~~~---------v~F~l~~~~~~~~~~l~~~--------------- 333 (794)
|+||++.++|+|||.|+|+||++||+ +|.|.+|.. .+|+++++++.+.+.++..
T Consensus 167 GliY~~~~~v~wcp~~~t~La~~ev~--~g~~~~~g~~ve~~~~~~~f~~i~~y~~~Ll~~l~~~~~wp~~v~~~~~~wi 244 (880)
T 4arc_A 167 GLVYKKTSAVNWCPNDQTVLANEQVI--DGCCWRCDTKVERKEIPQWFIKITAYADELLNDLDKLDHWPDTVKTMQRNWI 244 (880)
T ss_dssp TCEEEEEECC--------------------------------CEEEEEECGGGGHHHHHHHGGGCTTSCHHHHHHHHHHH
T ss_pred CCEEEeceeEeecCCcCCEecchhhh--cCcCcCCCCccEEEEccceEEeechhHHHHHHHHhhcccccHHHHHHHHhhh
Confidence 99999999999999999999999987 456655532 2466665544332222110
Q ss_pred -----------c--CCccceeccCCCCccccccEEEECCCcceeeeeecccccCCCCCcCCCCCCCCCcccCCcceEeee
Q 003799 334 -----------L--PDLGLAVWTTTPWTVPANAAVAVNAKLQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFIIV 400 (794)
Q Consensus 334 -----------~--~~~~l~iwTT~PwTi~~n~av~v~p~~~Y~~v~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~iv 400 (794)
+ .+.+|+|||||||||+|++||+|||++.|+...+..
T Consensus 245 g~s~g~~v~f~~~~~~~~i~v~TTrP~Tl~g~t~vav~Pe~~~~~~~~~~------------------------------ 294 (880)
T 4arc_A 245 GRSEGVEITFNVNDYDNTLTVYTTRPDTFMGCTYLAVAAGHPLAQKAAEN------------------------------ 294 (880)
T ss_dssp CEEEEEEEEEEETTCSSEEEEEESCGGGGGGCCEEEECTTCHHHHHHGGG------------------------------
T ss_pred ccccceEEEEEecCCCceEEEEeCCchhhcCCeEEEECCCcHHHHHHhcC------------------------------
Confidence 1 235799999999999999999999999988543221
Q ss_pred cccchHHHHHhcC---C-ceEE-EeeeccCcccCCeeecCCCCCcccEEeccCcccccCCCCceeecCCCChhhHHHHHH
Q 003799 401 ASDLVPTLEAKWG---T-KLVI-KKTLAGSDLENCRYVHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLK 475 (794)
Q Consensus 401 ~~~~~~~~~~~~~---~-~~~~-~~~~~G~~L~g~~~~~Pl~~~~~pvvi~~~~V~~~~GTG~Vh~aPaHg~~D~~~~~~ 475 (794)
...+..+.+... . +..+ ..+.+|. +.|+++.||++++++|||+ ++||++++|||+||+|||||++||+++++
T Consensus 295 -~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~g~~~~~P~~~~~ipi~~-~~yV~~~~GTGaV~~~Pahd~~D~~~~~~ 371 (880)
T 4arc_A 295 -NPELAAFIDECRNTKVAEAEMATMEKKGV-DTGFKAVHPLTGEEIPVWA-ANFVLMEYGTGAVMAVPGHDQRDYEFASK 371 (880)
T ss_dssp -CHHHHHHHTC----------------CEE-EEEEEEECTTTCCEEEEEE-ETTSCSSSTTSEEEECTTTCHHHHHHHHH
T ss_pred -hHHHHHHHHHHhccCchhhhhccceeecc-ccCcEEecCCCCCEeEEEE-eCccccCCCCceEEEccCCCHHHHHHHHH
Confidence 011222222111 0 1111 1245665 6899999999999999965 89999999999999999999999999999
Q ss_pred hCCCccccCCC---------CCcccc-----ccCCCCCccccccchHHHHHHHHhcCCccccccc--------ccccccc
Q 003799 476 YGLPILSPVDD---------EGKFTE-----EAGKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPY--------EHKYPYD 533 (794)
Q Consensus 476 ~gl~i~~~vd~---------~G~~~~-----~~~~~~G~~v~~ea~~~ii~~L~~~g~l~~~~~~--------~h~yp~~ 533 (794)
||||++++|+. ++.|+. ++++|.||.+. +|+++|++.|+++|++.+...| +++|
T Consensus 372 ~~Lpi~~vi~~~~~~~~~~~~~~~~~~g~~~ns~~~~Gl~~~-eA~~~ii~~L~~~g~~~~~v~yrlrDW~iSRQRy--- 447 (880)
T 4arc_A 372 YGLNIKPVILAADGSEPDLSQQALTEKGVLFNSGEFNGLDHE-AAFNAIADKLTAMGVGERKVNYRLRDWGVSRQRY--- 447 (880)
T ss_dssp HTCCCCCCBCCTTSCCCCCSSSCCCSCCCBCSSGGGTTCCHH-HHHHHHHHHHHHTTSEEEEEEESCCCEECEESCS---
T ss_pred cCCCceEeeccCcccccccccccccCCceeecCcccCCCCHH-HHHHHHHHHHHHcCCcceeEEEEcccceeeeeec---
Confidence 99999988752 223443 35789999996 9999999999999998887766 4778
Q ss_pred cCCCCcEEEcc---------------------------------------------------cCccccchhhH-------
Q 003799 534 WRTKKPTIFRA---------------------------------------------------TEQWFASVEGF------- 555 (794)
Q Consensus 534 WRt~~pii~r~---------------------------------------------------t~QWfi~~~~~------- 555 (794)
|+|+.|++|+. .|+||.+...+
T Consensus 448 WG~PIPi~~c~~cg~v~v~~~~Lpv~lp~~~~~~~~g~pl~~~~~w~~~~cpg~~~~retDtmDtw~dSswy~~r~~~p~ 527 (880)
T 4arc_A 448 WGAPIPMVTLEDGTVMPTPDDQLPVILPEDVVMDGITSPIKADPEWAKTTVNGMPALRETDTFDTFMESSWYYARYTCPQ 527 (880)
T ss_dssp SSCBCCEEEETTSCEEECCGGGCSCCCCSSCCCCSSSCHHHHSTTTTEEESSSSEEEECCCEECTTTGGGTHHHHTTSTT
T ss_pred cCCcceEEEECCCCeEeCChHHCccccchhcccCCCCCchHhCccceeeccCCCcceeCCCcCCCcccCcHHHHhhcCCC
Confidence 99999999853 13676543100
Q ss_pred ----------------------------------H--H------------------------------------------
Q 003799 556 ----------------------------------R--Q------------------------------------------ 557 (794)
Q Consensus 556 ----------------------------------~--~------------------------------------------ 557 (794)
| .
T Consensus 528 ~~~~~~~~~~~~~~~PvD~yigG~EHailHllyaRf~~~~L~~~g~~~~~ePFk~ll~qGmVl~~~~~~~d~~G~~~~~~ 607 (880)
T 4arc_A 528 YKEGMLDSEAANYWLPVDIYIGGIEHAIMHLLYFRFFHKLMRDAGMVNSDEPAKQLLCQGMVLADAFYYVGENGERNWVS 607 (880)
T ss_dssp CCSSSCCHHHHHHHCSEEEEECCGGGTTTHHHHHHHHHHHHHHTTSCCCSCSEEEEECCCCEEEEEEEEECTTSCEEEEC
T ss_pred ccccccChHHHhccCCceEeecchhhHHHHHHHHHHHHHHHHHhhcccCCCChHHeEEeceEeecceeccccCCcccccC
Confidence 0 0
Q ss_pred -------------------------------HHHhhhcCeeecCCCCCCCCCCchhhhhhhhc-CCCCceecChHHHHHH
Q 003799 558 -------------------------------AAMDAIGQVKWVPPQEAPGYGADVLRLWVSSV-DYTGDVMIGPQVLRQM 605 (794)
Q Consensus 558 -------------------------------~~l~~i~~v~~~P~~~~~~yGaD~lRl~las~-~~~~Di~~s~~~l~~~ 605 (794)
||+|+.+|+.. |.+++++||||++|||++++ .+.+|++|+++.++++
T Consensus 608 ~~~v~~~~~~~~~~~~~~~~~G~~v~~~~~eKMSKSkGNvVd-P~diIekYGADalRl~ll~~~~~~~dl~~s~~~ie~a 686 (880)
T 4arc_A 608 PVDAIVERDEKGRIVKAKDAAGHELVYTGMSKMSKSKNNGID-PQVMVERYGADTVRLFMMFASPADMTLEWQESGVEGA 686 (880)
T ss_dssp STTCEEEECTTCCEEEEECTTCCBCEEEEEEECCTTTTCCCC-HHHHHHHHCHHHHHHHHHHSSCTTSCEECCHHHHHHH
T ss_pred HHHhccccccccccccccccCCccccccccccccCcCCCCCC-HHHHHHHcCchHHHHHHHhcCCCCCCcccCHHHHHHH
Confidence 33333333332 33355689999999999977 7899999999999999
Q ss_pred HHHHHHHHhHHHHHHhcccCCCCCCCcCCCCCChhhHHHHHHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHhhhHHHH
Q 003799 606 SDIYRKLRGTLRYLLGNLHDWRVGNSISYDDLPMIDQYALFQLENIVKNIRESYE-SYQFFKIFQIIQRFIIVDLSNFYF 684 (794)
Q Consensus 606 ~~~~~kl~Nt~rfll~nl~~~~~~~~~~~~~l~~~D~~il~~l~~lv~~v~~~~e-~y~f~~ai~~l~~f~~~~lsn~Yl 684 (794)
.++++|+||++++.+.+... ...+...+...|+|+++++++++++++++|+ +|+|++|++.+|+|++ ++++ |
T Consensus 687 ~rfl~rlwn~~~~~~~~~~~----~~~~~~~l~~~D~~ll~~l~~~i~~V~~a~ed~~~fntAi~~l~efvn-~l~k-~- 759 (880)
T 4arc_A 687 NRFLKRVWKLVYEHTAKGDV----AALNVDALTENQKALRRDVHKTIAKVTDDIGRRQTFNTAIAAIMELMN-KLAK-A- 759 (880)
T ss_dssp HHHHHHHHHHHHHHHHTCCC----CCCCSTTCCHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH-HHHT-S-
T ss_pred HHHHHHHHHHHHHHHhcccc----cccccccCCHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHH-HHHh-h-
Confidence 99999999999887654211 1122345678999999999999999999999 8999999999999995 3543 2
Q ss_pred HhhccccccCCCChHhHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhCCCCccccCCCCCCceeecCCCCCCcccCC
Q 003799 685 DVAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAAEFVFESKWPVLDEKWRT 763 (794)
Q Consensus 685 e~~K~rly~~~~d~~~r~s~~~vL~~iL~~l~~lLaP~~P~~aEEiw~~L~~~~~~~~~~~~~sV~~~~wP~~~e~~~~ 763 (794)
.+ ++ .+.+.+|+++|+.+++||+||+||+|||||+.|+.. +||+.++||++++.++.
T Consensus 760 --------~~--~~---~~~~~~l~~~l~~ll~LLaPf~PhiaEElW~~Lg~~---------~sv~~~~wP~~d~~~l~ 816 (880)
T 4arc_A 760 --------PT--DG---EQDRALMQEALLAVVRMLNPFTPHICFTLWQELKGE---------GDIDNAPWPVADEKAMV 816 (880)
T ss_dssp --------CC--SS---HHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHTTCS---------SCGGGSCCCCCCHHHHC
T ss_pred --------hc--cc---hHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHcCCC---------CeEEeCCCCCCCHHHhc
Confidence 11 11 235678999999999999999999999999999753 68999999999987643
No 8
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=100.00 E-value=9.3e-65 Score=591.06 Aligned_cols=472 Identities=15% Similarity=0.140 Sum_probs=339.5
Q ss_pred CCCcEEEEcCCCCCCCcccchHHHhHHHHHHHHHHHHhCCCeeEEeccccCCCchHHHHHHhhchhhhhcCCCHHHHHHH
Q 003799 148 DGENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAK 227 (794)
Q Consensus 148 ~~~~f~i~~~pPy~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G~D~hGlpie~~~~k~~~~~~~~~~~~~~~~~~ 227 (794)
+.++|+||+|||||||.||||||+|++++|+++||+||+||+|+|++||||||+|||.+|+ +++++|.++
T Consensus 7 ~~k~f~Ittp~pY~nG~lHiGHa~~~~~~Dii~Ry~r~~G~~v~~v~G~D~hG~~ie~~a~-------k~g~~~~e~--- 76 (542)
T 3u1f_A 7 VEKVFFVTSPIYYVNAAPHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHGQKVAEAAK-------QKQVSPYDF--- 76 (542)
T ss_dssp CCCCEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEECCSHHHHHHHH-------HTTSCHHHH---
T ss_pred CCCCEEEeCCCCCCCCchhhHHHHHHHHHHHHHHHHHhcCCCccccCccCcChHHHHHHHH-------HcCCCHHHH---
Confidence 4589999999999999999999999999999999999999999999999999999999988 457788665
Q ss_pred HHHHHHHHHHHHHHHHHHcCCccCCCCccccCChHHHHHHHHHHHHHHHcCCeeecccCceeccCCCccccccccccCCc
Q 003799 228 AAKFAKATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAEAELEYPEG 307 (794)
Q Consensus 228 ~~~~a~~~~~~~~~~~~~lGi~~dwd~~~~T~d~~~~~~v~~~f~~L~~kGlIy~~~~~v~w~~~~~t~Lae~Evey~e~ 307 (794)
|+++++.++++|++|||+. |.+++|+||.|.+.++++|.+|+++|+||++.++|+|||+|+|+|+|+||+..-+
T Consensus 77 ----~~~~~~~~~~~~~~lgi~~--D~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~~~l~d~~v~~~~~ 150 (542)
T 3u1f_A 77 ----TTAVAGEFKKCFEQMDYSI--DYFIRTTNEQHKAVVKELWTKLEQKGDIYLGRYEGWYSISDESFLTPQNITDGVD 150 (542)
T ss_dssp ----HHHHHHHHHHHHHHHTCCC--SEEEETTCHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGEEEEEC
T ss_pred ----HHHHHHHHHHHHHHhCCcc--CcCccCCCHHHHHHHHHHHHHHhhcCcEEecceeEEeeccCcccchhhhhhcccc
Confidence 8999999999999999955 5588999999999999999999999999999999999999999999999973100
Q ss_pred -------ccccccce---------eEEeccCCCCcccccccccCCccceeccCCCCccccccEEEECCCcce--eeeeec
Q 003799 308 -------HVSRSIYA---------VFRMVSAPPSTSGLLNEFLPDLGLAVWTTTPWTVPANAAVAVNAKLQY--AVVEIQ 369 (794)
Q Consensus 308 -------~~~~~~~v---------~F~l~~~~~~~~~~l~~~~~~~~l~iwTT~PwTi~~n~av~v~p~~~Y--~~v~~~ 369 (794)
+|.+|... +|++++..+.+.+.++ ..|. .+.|+... .+-.+.
T Consensus 151 ~~g~~~~~~~~sg~~ve~~~~~~~f~~l~~~~~~l~~~~~------------~~~~--------~~~P~~~~~~~~~~~~ 210 (542)
T 3u1f_A 151 KDGNPCKVSLESGHVVTWVSEENYMFRLSAFRERLLEWYH------------ANPG--------CIVPEFRRREVIRAVE 210 (542)
T ss_dssp TTSCEEEEETTTCCBEEEEEEEEEEECGGGGHHHHHHHHH------------HCTT--------SEESHHHHHHHHHHHH
T ss_pred ccCccccccCCCCCcceeeccccceecchhHHHHHHHHHh------------hccc--------ccCCchhhHhHhhhhh
Confidence 11112110 2333322111111110 0110 11232210 001123
Q ss_pred ccccCCCCCcCCCCC-CCCCcccCCcceEeeecccchHHHHHhcCCceEEEeeeccCcccCCeeecCCCCCcccEEeccC
Q 003799 370 SLLEGDSAAPANKKS-RPGNVLKDQKKVFIIVASDLVPTLEAKWGTKLVIKKTLAGSDLENCRYVHPVDNRQCPVVIGGD 448 (794)
Q Consensus 370 ~~~~~~s~~~~~~~~-~~g~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~G~~L~g~~~~~Pl~~~~~pvvi~~~ 448 (794)
+.+.|-.+||+..+. .||+|+|...++.++||.|++..+....+... +-.|... ...++
T Consensus 211 ~~l~Dw~ISRq~~~~~~WGipiP~~~~~~~~vw~da~~~~~~~~~~~~---------~~~g~~~-----------~~~d~ 270 (542)
T 3u1f_A 211 KGLPDLSVSRARATLHNWAIPVPGNPDHXVYVWLDALTNYLTGSRLRV---------DESGKEV-----------SLVDD 270 (542)
T ss_dssp HCCCCEECEEEGGGGTTCSCEETTEEEEEECHHHHHHTHHHHHHTEEE---------CTTSCEE-----------EECSS
T ss_pred ccccccCccccccCcCCCCCccCCCcCeeeeeeeccchhhhhhhhccc---------cccCCcc-----------cccch
Confidence 446788889977543 69999999999999999998877665432110 0011111 11111
Q ss_pred cccccCCCCceeecCCCChhhHHHHHHhCCCccccCCCCCccccccCCCCCccccccchHHHHHHHHhcCCccccccccc
Q 003799 449 YITTESGTGLVHTAPGHGQEDYVTSLKYGLPILSPVDDEGKFTEEAGKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEH 528 (794)
Q Consensus 449 ~V~~~~GTG~Vh~aPaHg~~D~~~~~~~gl~i~~~vd~~G~~~~~~~~~~G~~v~~ea~~~ii~~L~~~g~l~~~~~~~h 528 (794)
+-....-..-||. .|.+...--....+..|...|.......+.|
T Consensus 271 ~~~~~~~p~d~~~------------------------------------~G~D~~~fh~~~~~a~l~~~g~~~~~~v~~h 314 (542)
T 3u1f_A 271 FNELERFPADVHV------------------------------------IGKDILKFHAIYWPAFLLSAGLPLPKKIVAH 314 (542)
T ss_dssp GGGTTCCSCSEEE------------------------------------EEGGGHHHHHTHHHHHHHHHTCCCCSCEEEE
T ss_pred hhhhcCCcceEEE------------------------------------ecccccccccchhHHHHHhhcccccceeccc
Confidence 1111100011111 1111100000112344444454433333333
Q ss_pred ccccccCCCCcEEEcccCccccchhhHHHHHHhhhcCeeecCCCCCCCCCCchhhhhhhh-cCCCCceecChHHHHHH--
Q 003799 529 KYPYDWRTKKPTIFRATEQWFASVEGFRQAAMDAIGQVKWVPPQEAPGYGADVLRLWVSS-VDYTGDVMIGPQVLRQM-- 605 (794)
Q Consensus 529 ~yp~~WRt~~pii~r~t~QWfi~~~~~~~~~l~~i~~v~~~P~~~~~~yGaD~lRl~las-~~~~~Di~~s~~~l~~~-- 605 (794)
. |+..++ +||+|+++|+.+ |.+++++||+|+||||+++ +.+++|++|+++.+...
T Consensus 315 g-------------------~l~~~G--~KMSKSlGNvi~-p~~~i~~ygaD~lR~~l~~~~~~~~d~~fs~~~~~~~~n 372 (542)
T 3u1f_A 315 G-------------------WWTKDR--KKISKSLGNVFD-PVEKAEEFGYDALKYFLLRESGFSDDGDYSDKNMIARLN 372 (542)
T ss_dssp C-------------------CCEETT--BCCBTTTTBCCC-HHHHHHHHCHHHHHHHHHHHCCTTSCCEECHHHHHHHHH
T ss_pred c-------------------ceecCC--ceeccccCCCCC-hhHHHhhcCchHHHHHHHhcCcccccccccHHHHHHHhh
Confidence 2 234444 899999999887 7778899999999999986 57899999999988764
Q ss_pred HHHHHHHHhHHHHHHhcccCCCCCCCcCCCCCChhhHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhHHHHH
Q 003799 606 SDIYRKLRGTLRYLLGNLHDWRVGNSISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFD 685 (794)
Q Consensus 606 ~~~~~kl~Nt~rfll~nl~~~~~~~~~~~~~l~~~D~~il~~l~~lv~~v~~~~e~y~f~~ai~~l~~f~~~~lsn~Yle 685 (794)
.+++++|+|++++++....++... ......+..+|+|+++++++++++++++|++|+|++|++.|++|+. ++|+|++
T Consensus 373 ~~l~n~l~N~~~r~~~~~~~~~~~-~~~~~~~~~~d~~il~~l~~~~~~~~~~~~~~~~~~a~~~i~~~~~--~~n~Y~~ 449 (542)
T 3u1f_A 373 GELADTLGNLVMRCTSAKINVNGE-WPSPAAYTEEDESLIQLIKDLPGTADHYYLIPDIQKAIIAVFDVLR--AINAYVT 449 (542)
T ss_dssp HTTTTTHHHHHHHHHCTTTSTTSB-CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhhhcccCC-CCccchhhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence 346789999999888765544322 2334567889999999999999999999999999999999999985 7999999
Q ss_pred hhccccccCCCChHhHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhCCCC
Q 003799 686 VAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFA 737 (794)
Q Consensus 686 ~~K~rly~~~~d~~~r~s~~~vL~~iL~~l~~lLaP~~P~~aEEiw~~L~~~ 737 (794)
..|||.+.+ .++.++++++.++.++|+.+++||+|||||+|||||++|+..
T Consensus 450 ~~~pw~l~k-~d~~~~~~~l~~~~~~l~~~~~ll~P~~P~~aeei~~~Lg~~ 500 (542)
T 3u1f_A 450 DMAPWKLVK-TDPERLRTVLYITLEGVRVTTLLLSPILPRKSVVIFDMLGVP 500 (542)
T ss_dssp HHCHHHHHH-HCHHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHTCC
T ss_pred hcCchhhhc-CCHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHCCCC
Confidence 999985443 245556677778889999999999999999999999999753
No 9
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=100.00 E-value=2.6e-58 Score=549.81 Aligned_cols=484 Identities=17% Similarity=0.161 Sum_probs=323.2
Q ss_pred CcEEEEcCCCCCCCcccchHHHh-HHHHHHHHHHHHhCCCeeEEeccccCCCchHHHHHHhhchhhhhcCCCHHHHHHHH
Q 003799 150 ENFVLHDGPPYANGNLHMGHALN-KILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKA 228 (794)
Q Consensus 150 ~~f~i~~~pPy~nG~lHiGHa~~-~il~Dii~R~~r~~G~~V~~~~G~D~hGlpie~~~~k~~~~~~~~~~~~~~~~~~~ 228 (794)
++|+|++|||||||.|||||++| ++++|+++||+||+||+|+|++||||||+|||.+|++ .+.+|.++
T Consensus 2 ~~~~itt~~Py~nG~lHiGHa~~~~i~~DiiaRy~rm~G~~V~~v~G~D~hG~pie~~A~k-------~G~~p~e~---- 70 (722)
T 1rqg_A 2 VRYMVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALK-------EGRSPREI---- 70 (722)
T ss_dssp CEEEEEECCCBTTSCCBHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHH-------HTCCHHHH----
T ss_pred CCEEEecCCCCCCCchhhchhhccHHHHHHHHHHHHhcCCceEecceeCCCCHHHHHHHHH-------cCCCHHHH----
Confidence 57999999999999999999999 9999999999999999999999999999999999983 46777554
Q ss_pred HHHHHHHHHHHHHHHHHcCCccCCCCccccCChHHHHHHHHHHHHHHHcCCeeecccCceeccCCCccccccccccCCcc
Q 003799 229 AKFAKATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAEAELEYPEGH 308 (794)
Q Consensus 229 ~~~a~~~~~~~~~~~~~lGi~~dwd~~~~T~d~~~~~~v~~~f~~L~~kGlIy~~~~~v~w~~~~~t~Lae~Evey~e~~ 308 (794)
++++++.++++|++||| +||.+++|+|+.|.+.++++|.+|+++|+||++.++|+|||.|+|+|+|.+|+ |.
T Consensus 71 ---~~~~~~~~~~~~~~lgi--s~D~~~rT~d~~~~~~v~~~f~~L~~kG~iY~~~~~v~y~~~~~tfl~d~~v~---gt 142 (722)
T 1rqg_A 71 ---VDEFHEQIKITFQRAKI--SFDFFGRTELPIHYKLSQEFFLKAYENGHLVKKVTKQAYCEHDKMFLPDRFVI---GT 142 (722)
T ss_dssp ---HHHHHHHHHHHHHHHTC--CCSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEBTTTTBCCCGGGCC---SB
T ss_pred ---HHHHHHHHHHHHHHhCC--CCCCCeeCCCHHHHHHHHHHHHHHHHCCCEEecceeeeecCCCCcCcchhhcc---cc
Confidence 99999999999999999 67779999999999999999999999999999999999999999999999886 45
Q ss_pred cccccceeEEeccCCCCcccccccccCCccc-----eeccCCCCcccccc-EEEE---------------CCCc--ceee
Q 003799 309 VSRSIYAVFRMVSAPPSTSGLLNEFLPDLGL-----AVWTTTPWTVPANA-AVAV---------------NAKL--QYAV 365 (794)
Q Consensus 309 ~~~~~~v~F~l~~~~~~~~~~l~~~~~~~~l-----~iwTT~PwTi~~n~-av~v---------------~p~~--~Y~~ 365 (794)
|+.|.+- ..+++ .++.+...+.+..+ .+.-++|+.....+ .+-+ -|+. ....
T Consensus 143 cP~c~~~----~~~Gd-~c~~~G~~l~~~~l~~p~~~r~g~~v~~~~~~qwF~~l~~~~~~l~~~~~~~~wp~~~~~~~~ 217 (722)
T 1rqg_A 143 CPYCGAE----DQKGD-QCEVCGRPLTPEILINPRCAICGRPISFRDSAHYYIKMQDFAERLKRWIEKQPWKPNVKNMVL 217 (722)
T ss_dssp CSSSCCS----CCCTT-TCSSSCCCCCTTSSBSCBCTTTCCBCEEEEEEEEEECGGGTHHHHHHHHHSSCCCHHHHHHHH
T ss_pred cCccCCc----cCCcc-hhhhcccccChhhccCCcccCCCcEeEEEEeccEEEEhHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 6555431 00110 00000000000000 00000111000000 0000 0110 0000
Q ss_pred eeecccccCCCCCcCCCCCCCCCcccC----CcceEeeecccchHHHHHhcCCceEEEeeeccCcccCCeeec-CCCC-C
Q 003799 366 VEIQSLLEGDSAAPANKKSRPGNVLKD----QKKVFIIVASDLVPTLEAKWGTKLVIKKTLAGSDLENCRYVH-PVDN-R 439 (794)
Q Consensus 366 v~~~~~~~~~s~~~~~~~~~~g~~~~~----~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~G~~L~g~~~~~-Pl~~-~ 439 (794)
--+..++.|.++||. ..||+++|. ..++.+|||.|++..+....+. + ..-.|..-.-..++. |-.+ .
T Consensus 218 ~wl~~gl~dw~ISR~---~~WG~piP~~~~g~~~~~iyvW~da~i~y~~~~~~-~---~~~~g~~~~~~~~w~~pd~~~~ 290 (722)
T 1rqg_A 218 SWIEEGLEERAITRD---LNWGIPVPLDEEDMKGKVLYVWFEAPIGYISITIE-H---FKRIGKPNEWKKYWLNIDGQTR 290 (722)
T ss_dssp HHHTTCCCCEECEEC---CSSSCBCSCCCSSSTTCEECHHHHGGGHHHHHHHH-H---HHHTTCTTTTHHHHBCSSCCEE
T ss_pred HHHHCCCcccceecc---ccCccccCccccCCCCCEEEEEeccccchhhhHHH-H---HhhcCCchHHHhccCCCCCCCe
Confidence 001245778888884 789999994 5778999999987665443210 0 000111000011221 0000 0
Q ss_pred cccEEeccCcccccCCCCceeecCCCChhhHHHHHHhCCCccccCCCCCccccccCCCCCccccccchHHHHHHHHhcCC
Q 003799 440 QCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPILSPVDDEGKFTEEAGKFSGLDVLGDGNVAVVKYLDEQMS 519 (794)
Q Consensus 440 ~~pvvi~~~~V~~~~GTG~Vh~aPaHg~~D~~~~~~~gl~i~~~vd~~G~~~~~~~~~~G~~v~~ea~~~ii~~L~~~g~ 519 (794)
.+++ ++.|. ++.|........+..|. +.+ .+++.|.
T Consensus 291 ~~h~-~GkDi------------i~fH~~~wpA~l~~~~~----~l~--------~d~~rg~------------------- 326 (722)
T 1rqg_A 291 VIHF-IGKDN------------IPFHAIFWPAFLMAYGK----YKD--------EEVEAEW------------------- 326 (722)
T ss_dssp EEEE-EEGGG------------HHHHHTHHHHHHHTTCC----BCS--------SSCCBCB-------------------
T ss_pred eEEE-ccccc------------cccchhhhHHHHhccCC----Ccc--------cccccCC-------------------
Confidence 0111 11111 11121111111111111 000 0111111
Q ss_pred cccccccccccccccCCCCcEEEcccCccccchhhHHHHHHhhhcCeeecCCCCCCCCCCchhhhhhhhc-CCCCceecC
Q 003799 520 LIMEEPYEHKYPYDWRTKKPTIFRATEQWFASVEGFRQAAMDAIGQVKWVPPQEAPGYGADVLRLWVSSV-DYTGDVMIG 598 (794)
Q Consensus 520 l~~~~~~~h~yp~~WRt~~pii~r~t~QWfi~~~~~~~~~l~~i~~v~~~P~~~~~~yGaD~lRl~las~-~~~~Di~~s 598 (794)
.++...+.|.+ +.+++ +||+++.+|+.+ |.+++++||+|++|||+++. ++++|++|+
T Consensus 327 ~~Pk~v~~hG~-------------------v~~~G--~KMSKS~GNvV~-p~d~i~~ygaDalR~~ll~~~~~~~D~~fs 384 (722)
T 1rqg_A 327 NLPYDIPANEY-------------------LTLEG--KKFSTSRNWAIW-VHEFLDVFPADYLRYYLTTIMPETRDSDFS 384 (722)
T ss_dssp CCCSBCCEECC-------------------EEETT--EECBTTTTBSCB-HHHHTTTSCHHHHHHHHHHTCCSSSCEEEC
T ss_pred CCCCEEEEeee-------------------EEeCC--eeeeeeCCCcCC-HHHHHHhcCchHHHHHHHhcCCCCCCCccC
Confidence 11111222222 22244 689999999988 88889999999999999976 889999999
Q ss_pred hHHHHHH--HHHHHHHHhHHH----HHHhcccCCCCCCCcCCCCCChhhHHHHHHHHHHHHHHHHHHhcccHHHHHHHHH
Q 003799 599 PQVLRQM--SDIYRKLRGTLR----YLLGNLHDWRVGNSISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQ 672 (794)
Q Consensus 599 ~~~l~~~--~~~~~kl~Nt~r----fll~nl~~~~~~~~~~~~~l~~~D~~il~~l~~lv~~v~~~~e~y~f~~ai~~l~ 672 (794)
++.+... .+++++++|++. |+..++++..+ ....+...|+|++++++++++++.++|++|+|++|++.++
T Consensus 385 ~~~~~~~~n~~l~~~l~N~~~R~~~~~~k~~~~~~~----~~~~~~~~d~~ll~~l~~~~~~v~~~~e~~~f~~A~~~i~ 460 (722)
T 1rqg_A 385 FSDFKVRINEELVNNLGNFVHRALTFVNRYFDGVVP----ERGELDELDREALEEIEKAFKEVGELIMNYRFKDALKRVM 460 (722)
T ss_dssp HHHHHHHHHHTTTTTHHHHHHHHHHHHHHHSTTBCC----CCCCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC----CcccCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 9988764 346777888554 44444332211 1234578899999999999999999999999999999999
Q ss_pred HHHHHhhhHHHHHhhccccccCCCChHhHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhCCCC
Q 003799 673 RFIIVDLSNFYFDVAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFA 737 (794)
Q Consensus 673 ~f~~~~lsn~Yle~~K~rly~~~~d~~~r~s~~~vL~~iL~~l~~lLaP~~P~~aEEiw~~L~~~ 737 (794)
+|+. ++|+|++..|||++++. +..+..++..++.++++.+++||+|||||+|||||++|+..
T Consensus 461 ~~~~--~~n~Yi~~~kpw~~~k~-~~~~~~~vl~~l~~~l~~l~~lL~P~~P~~aeei~~~L~~~ 522 (722)
T 1rqg_A 461 SLAS--FGNRYFDHKQPWKTAKE-DKVRTGTTVNISLQIVKALGILLEPFLPDASEKIWHLLNLD 522 (722)
T ss_dssp HHHH--HHHHHHHTTCHHHHTTT-CHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCC
T ss_pred HHHH--HHHHHHHhcCchhhcCC-CHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHcCCC
Confidence 9984 89999999999998763 44444556677889999999999999999999999999753
No 10
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=100.00 E-value=1.8e-56 Score=521.79 Aligned_cols=475 Identities=15% Similarity=0.170 Sum_probs=339.7
Q ss_pred CcchhccccCCCCcEEEEcCCCCCCCcccchHHHhHHHHHHHHHHHHhCCCeeEEeccccCCCchHHHHHHhhchhhhhc
Q 003799 138 QVFLRVADKNDGENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKK 217 (794)
Q Consensus 138 ~~~~~~~~~~~~~~f~i~~~pPy~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G~D~hGlpie~~~~k~~~~~~~~ 217 (794)
+.|..... .++++|+|+.|+|||||+|||||+++++++|+++||+|++||+|.+++|+|+||+||+..++ +.
T Consensus 15 ~~~~~~~~-~~~~~~~i~~~~py~ng~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~dd~G~ki~~~a~-------~~ 86 (564)
T 3kfl_A 15 QTQGPGSM-KKQKVFFATTPIYYVNASPHIGHVYSTLIVDVLGRYHRVKGEEVFVMTGTDEHGQKVAEAAA-------KQ 86 (564)
T ss_dssp ----------CCCCEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEECCSHHHHHHHH-------HT
T ss_pred hhcCCccc-cCCCCEEEeCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCcEEEecCcCCCCcHHHHHHH-------Hc
Confidence 44544322 34678999999999999999999999999999999999999999999999999999999887 45
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCCccccCChHHHHHHHHHHHHHHHcCCeeecccCceeccCCCccc
Q 003799 218 DLTPSKLRAKAAKFAKATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTAL 297 (794)
Q Consensus 218 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~lGi~~dwd~~~~T~d~~~~~~v~~~f~~L~~kGlIy~~~~~v~w~~~~~t~L 297 (794)
+.+|+++ ++++.+.+++++++||| ++|.+++|+++.|.+.++++|.+|+++|+||++.+.++||+.|+++|
T Consensus 87 g~~p~~~-------~~~~~~~~~~~~~~lgi--~~D~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l 157 (564)
T 3kfl_A 87 GVSPMDF-------TTSVSSEFKQCFQEMNY--DMNYFIRTTNPTHEKLVQDIWKKLAAKGDIYLGKYEGWYSVSDESFL 157 (564)
T ss_dssp TCCHHHH-------HHHHHHHHHHHHHHTTC--CCSEEEETTSHHHHHHHHHHHHHHHHHTCEEEEEEEEEEETTTTEEE
T ss_pred CCCHHHH-------HHHHHHHHHHHHHHcCC--CCCccccCCCHHHHHHHHHHHHHHHHCCCEEEeeeeEEecCCcCCCC
Confidence 6788765 89999999999999999 67788999999999999999999999999999999999999999999
Q ss_pred cccccccC---C-cccc---ccc---------ceeEEeccCCCCcccccccccCCccceeccCCCCccccccEEEECCCc
Q 003799 298 AEAELEYP---E-GHVS---RSI---------YAVFRMVSAPPSTSGLLNEFLPDLGLAVWTTTPWTVPANAAVAVNAKL 361 (794)
Q Consensus 298 ae~Evey~---e-~~~~---~~~---------~v~F~l~~~~~~~~~~l~~~~~~~~l~iwTT~PwTi~~n~av~v~p~~ 361 (794)
++.|+... + +.|. ++. -.+|+++++++.+.+.+++ .|.. +.|+.
T Consensus 158 ~~~~~~~~~~~~g~~c~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~------------~~~~--------i~P~~ 217 (564)
T 3kfl_A 158 TAQNVADGVDRDGKPCKVSLESGHVVTWVEEENYMFRLSAFRERLLKYFHD------------HPNC--------IVPEF 217 (564)
T ss_dssp CGGGEEEEECTTSCEEEEETTTSCBCEEEEEEEEEECGGGGHHHHHHHHHH------------CTTS--------EESHH
T ss_pred CHHHhccCcCCCCCEeccccCCCCccEEEecceeEEEHHHHHHHHHHHHHh------------CCCc--------cCCHH
Confidence 99999632 1 1220 111 1245555443322211111 1110 11221
Q ss_pred c--eeeeeecccccCCCCCcC-CCCCCCCCcccCCcceEeeecccchHHHHHhcCCceEEEeeeccC-----cccCCeee
Q 003799 362 Q--YAVVEIQSLLEGDSAAPA-NKKSRPGNVLKDQKKVFIIVASDLVPTLEAKWGTKLVIKKTLAGS-----DLENCRYV 433 (794)
Q Consensus 362 ~--Y~~v~~~~~~~~~s~~~~-~~~~~~g~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~G~-----~L~g~~~~ 433 (794)
. ...--+..++.|.++||+ +++..||+++|.+.++.++||.|++..+.+.++.- ..-++. ++....++
T Consensus 218 ~~~~~~~wl~~gl~D~~ISR~~~~~~~WGipiP~~~~~v~yVWfDa~~~y~s~~~~~----~~~~~~~~~~~~~~~~~~w 293 (564)
T 3kfl_A 218 RRREVIKTVEKGLFDLSISRKRESVMNWSIPVPGDERHCIYVWLDALFNYYTGALTR----VATDGTETLDEDHHALNRW 293 (564)
T ss_dssp HHHHHHHHHHHCCCCEECEEEGGGGTTCSCEETTEEEEEECHHHHHHTHHHHHHHEE----ECTTSCEEECSSSTTTTCC
T ss_pred HHHHHHHHHhCCCCCccccCcCCCCCCCCeecCCCCCCEEEEeccCcHHHHHHhCcc----ccccccccchhcchhhhcC
Confidence 0 011112346788899985 45789999999999999999999988877654320 000010 00001111
Q ss_pred cCCCCCcccEEeccCcccccCCCCceeecCCCChhhHHHHHHhCCCccccCCCCCccccccCCCCCccccccchHHHHHH
Q 003799 434 HPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPILSPVDDEGKFTEEAGKFSGLDVLGDGNVAVVKY 513 (794)
Q Consensus 434 ~Pl~~~~~pvvi~~~~V~~~~GTG~Vh~aPaHg~~D~~~~~~~gl~i~~~vd~~G~~~~~~~~~~G~~v~~ea~~~ii~~ 513 (794)
| ..+.+ ++.|.+ +.|..-. ...
T Consensus 294 -p---~dv~~-~GkDii------------~FH~~~w-----------------------------------------pa~ 315 (564)
T 3kfl_A 294 -P---ADVHV-VGKDIL------------KFHAIYW-----------------------------------------PAF 315 (564)
T ss_dssp -S---CSEEE-EEGGGH------------HHHHTHH-----------------------------------------HHH
T ss_pred -c---cceEE-Eeeccc------------chHHHHH-----------------------------------------HHH
Confidence 1 11222 222211 1111111 123
Q ss_pred HHhcCCcccccccccccccccCCCCcEEEcccCccccchhhHHHHHHhhhcCeeecCCCCCCCCCCchhhhhhhh-cCCC
Q 003799 514 LDEQMSLIMEEPYEHKYPYDWRTKKPTIFRATEQWFASVEGFRQAAMDAIGQVKWVPPQEAPGYGADVLRLWVSS-VDYT 592 (794)
Q Consensus 514 L~~~g~l~~~~~~~h~yp~~WRt~~pii~r~t~QWfi~~~~~~~~~l~~i~~v~~~P~~~~~~yGaD~lRl~las-~~~~ 592 (794)
|...|.......+.|.+ . ..++ +||+++.+|+.+ |.+++++||+|++|||+++ .+++
T Consensus 316 L~a~g~~~~~~v~~hg~------------------v-~~~G--~KMSKS~GNvV~-p~d~i~~~G~DalR~~ll~~~~~~ 373 (564)
T 3kfl_A 316 LMSAELPLPERLVSHGW------------------W-TKDH--KKISKSLGNAFD-PVEKAKEFGIDALKYFLMRESNFQ 373 (564)
T ss_dssp HHHTTCCCCSCEEEECC------------------E-EETT--EECCTTTTCCCC-HHHHHHHHCHHHHHHHHHHHCCSS
T ss_pred HHhCCCCCCcEEEEccc------------------E-eeCC--ccccccCCCCCC-HHHHHHHcCcHHHHHHHHHcCCcc
Confidence 33333322222222322 2 3344 688999998887 7767889999999999997 6889
Q ss_pred CceecChHHHHHH--HHHHHHHHhHHHHHHhcccCCCCCCCcCCCCCChhhHHHHHHHHHHHHHHHHHHhcccHHHHHHH
Q 003799 593 GDVMIGPQVLRQM--SDIYRKLRGTLRYLLGNLHDWRVGNSISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQI 670 (794)
Q Consensus 593 ~Di~~s~~~l~~~--~~~~~kl~Nt~rfll~nl~~~~~~~~~~~~~l~~~D~~il~~l~~lv~~v~~~~e~y~f~~ai~~ 670 (794)
+|++|+++.+... .+.+++|+|+++++++.+..+. +.......+...|+|++++++++++++.++|++|+|++|++.
T Consensus 374 ~D~~fs~~~~~~~~n~~l~~~l~N~~~R~~~~~~~~~-g~~p~~~~~~~~d~~ll~~l~~~~~~v~~a~e~~~~~~a~~~ 452 (564)
T 3kfl_A 374 DDGDYSDKNMVARLNGELADTLGNLVSRCVAPKINVN-GMWPEPAEYSESDKTLIASLNNLAGTVDHYYCLPDIQHALIA 452 (564)
T ss_dssp CCEECCHHHHHHHHHHTTTTTHHHHHHHHHCTTTSTT-SBCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 9999999988764 4588999999988877655222 111112356789999999999999999999999999999999
Q ss_pred HHHHHHHhhhHHHHHhhccccccCCCChHhHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhCCCC
Q 003799 671 IQRFIIVDLSNFYFDVAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFA 737 (794)
Q Consensus 671 l~~f~~~~lsn~Yle~~K~rly~~~~d~~~r~s~~~vL~~iL~~l~~lLaP~~P~~aEEiw~~L~~~ 737 (794)
+++|++ ++|+|++..|||...+ .+..++.+++.++.++|+.+++||+|||||+|||||++|+..
T Consensus 453 i~~l~~--~~n~Y~~~~kpW~l~~-~~~~~~~~~~~~l~~~l~~l~~lL~P~~P~~ae~i~~~Lg~~ 516 (564)
T 3kfl_A 453 IFDVLR--SLNAYVTENAPWKLVK-MDTARLGTVLYVTMEGLRICTMFLQPVMPQKAKEIMDALGVP 516 (564)
T ss_dssp HHHHHH--HHHHHHHHHCHHHHTT-TCHHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHTCC
T ss_pred HHHHHH--HHHHHHHhcCChhhhc-CCHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHcCCC
Confidence 999986 7999999999964333 344555677888999999999999999999999999999753
No 11
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Probab=100.00 E-value=6.2e-56 Score=515.32 Aligned_cols=457 Identities=19% Similarity=0.218 Sum_probs=321.6
Q ss_pred CCCcEEEEcCCCCCCCcccchHHHhHHHHHHHHHHHHhCCCeeEEeccccCCCchHHHHHHhhchhhhhcCCCHHHHHHH
Q 003799 148 DGENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAK 227 (794)
Q Consensus 148 ~~~~f~i~~~pPy~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G~D~hGlpie~~~~k~~~~~~~~~~~~~~~~~~ 227 (794)
++++|+++.|+|||||+|||||+++++++|+++||+|++||+|.+++|+|+||.||+..+. +.+.+|.++
T Consensus 23 ~~~~~~i~~p~pypng~lHiGH~r~~v~~D~laR~lr~~G~~V~~~~g~dd~g~ki~~~a~-------~~g~~~~~~--- 92 (536)
T 4dlp_A 23 SREKYYITTAIAYPNGKPHIGHAYELIATDAMARFQRLNGMDVYFLTGTDEHGIKMLQSAR-------KEGITPRDL--- 92 (536)
T ss_dssp -CCEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHH-------HHTSCHHHH---
T ss_pred CCCCEEEeCCCCCCCCCcCcchhHHHHHHHHHHHHHHhcCCcEEEecCcCCcchHHHHHHH-------HcCCCHHHH---
Confidence 4578999999999999999999999999999999999999999999999999999999886 456778665
Q ss_pred HHHHHHHHHHHHHHHHHHcCCccCCCCccccCChHHHHHHHHHHHHHHHcCCeeecccCceeccCCCccccccccccC-C
Q 003799 228 AAKFAKATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAEAELEYP-E 306 (794)
Q Consensus 228 ~~~~a~~~~~~~~~~~~~lGi~~dwd~~~~T~d~~~~~~v~~~f~~L~~kGlIy~~~~~v~w~~~~~t~Lae~Evey~-e 306 (794)
++++++.+++++++||| +||.+++|+++.|.+.++++|.+|+++|+||++.++++||++|+++++++|++.+ +
T Consensus 93 ----~~~~~~~~~~~l~~lgi--~~d~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~~~~~~~~~~~l~~~~~~~~~~ 166 (536)
T 4dlp_A 93 ----ADRNTSAFRRMAEVLNS--SNDDYIRTSEERHYKASQAIWQAMVANGDIYKGGYAGWYSVRDEAYYGEEETEVRAD 166 (536)
T ss_dssp ----HHHHHHHHHHHHHHTTC--CCSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGCEECTT
T ss_pred ----HHHHHHHHHHHHHHcCC--CCCcceeCCCHHHHHHHHHHHHHHHHCCCEEEeceeeeecCCcCcccCHHHhhcCCC
Confidence 88899999999999999 7889999999999999999999999999999999999999999999999999643 1
Q ss_pred c-ccccccc---------eeEEeccCCCCcccccccccCCccceeccCCCCccccccEEEECCCcc--eeeeeecccccC
Q 003799 307 G-HVSRSIY---------AVFRMVSAPPSTSGLLNEFLPDLGLAVWTTTPWTVPANAAVAVNAKLQ--YAVVEIQSLLEG 374 (794)
Q Consensus 307 ~-~~~~~~~---------v~F~l~~~~~~~~~~l~~~~~~~~l~iwTT~PwTi~~n~av~v~p~~~--Y~~v~~~~~~~~ 374 (794)
| .|++|.. .+|+++++++.+.+.++. .|. .+.|+.. ...--+.+++.|
T Consensus 167 g~~c~~~g~~~e~~~~~~~f~~l~~~~~~l~~~~~~------------~~~--------~i~P~~~~~~~~~~l~~~l~D 226 (536)
T 4dlp_A 167 GVRYGPQGTPVEWVEEESYFFRLSAYQDKLLDLYEN------------NPG--------FIMPAERRNEIVSFVKSGLKD 226 (536)
T ss_dssp SCEECTTSSBCEEEEEEEEEECGGGGHHHHHHHHHH------------CTT--------SEESHHHHHHHHHHHHTCCCC
T ss_pred CCcccCCCCcceEEeccceEEecHHHHHHHHHHHHh------------CCC--------ccCcHHHHHHHHHHHhcCCCc
Confidence 2 3444432 135554433222111110 111 1112210 000112345678
Q ss_pred CCCCcCCCCCCCCCcccCCcceEeeecccchHHHHHhcCCceEEEeeeccCcccCCeeecCCCCCcccEEeccCcccccC
Q 003799 375 DSAAPANKKSRPGNVLKDQKKVFIIVASDLVPTLEAKWGTKLVIKKTLAGSDLENCRYVHPVDNRQCPVVIGGDYITTES 454 (794)
Q Consensus 375 ~s~~~~~~~~~~g~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~G~~L~g~~~~~Pl~~~~~pvvi~~~~V~~~~ 454 (794)
.++|| ++..||+++|.+.++.++||.|+...+.+..|.... ..++ ..++ |. .+.+ ++.|.+-
T Consensus 227 ~~ISR--~~~~WGipiP~~~~~v~yvWfda~~~y~s~~~~~~~------~~~~--~~~~-p~---dv~~-~G~D~~~--- 288 (536)
T 4dlp_A 227 LSISR--TTFDWGIPVPGDEKHVMYVWVDALTNYITALGYPDT------TDER--WAYW-PA---NAHI-IGKDISR--- 288 (536)
T ss_dssp EECEE--C--CCSCBCTTCTTSEECHHHHHHHHHHHTTTTTCT------TSGG--GGGC-SC---SEEE-EEGGGHH---
T ss_pred cCCcc--CCCcCCeeCCCCCCCceEEeeCCcHHHHHhcCCCCC------chHH--HhhC-Cc---ceEE-eechHHH---
Confidence 88888 468899999999999999999998887765443100 0000 0011 11 1112 2222111
Q ss_pred CCCceeecCCCChhhHHHHHHhCCCccccCCCCCccccccCCCCCccccccchHHHHHHHHhcCCccccccccccccccc
Q 003799 455 GTGLVHTAPGHGQEDYVTSLKYGLPILSPVDDEGKFTEEAGKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDW 534 (794)
Q Consensus 455 GTG~Vh~aPaHg~~D~~~~~~~gl~i~~~vd~~G~~~~~~~~~~G~~v~~ea~~~ii~~L~~~g~l~~~~~~~h~yp~~W 534 (794)
.|+.. .+..|...|.......+.|
T Consensus 289 ---------fh~~~-----------------------------------------~~a~l~a~g~~~~~~v~~h------ 312 (536)
T 4dlp_A 289 ---------FHAVY-----------------------------------------WPAFLMSAQLPLPKRVFAH------ 312 (536)
T ss_dssp ---------HHHTH-----------------------------------------HHHHHHHTTCCCCSCEEEE------
T ss_pred ---------HHHHH-----------------------------------------HHHHHHHCCCCCCcEEEee------
Confidence 11111 1122333332222222222
Q ss_pred CCCCcEEEcccCccccchhhHHHHHHhhhcCeeecCCCCCCCCCCchhhhhhhh-cCCCCceecChHHHHHH--HHHHHH
Q 003799 535 RTKKPTIFRATEQWFASVEGFRQAAMDAIGQVKWVPPQEAPGYGADVLRLWVSS-VDYTGDVMIGPQVLRQM--SDIYRK 611 (794)
Q Consensus 535 Rt~~pii~r~t~QWfi~~~~~~~~~l~~i~~v~~~P~~~~~~yGaD~lRl~las-~~~~~Di~~s~~~l~~~--~~~~~k 611 (794)
+|.. .++ +||+++.+|+.+ |.+++++||+|++|||+++ .++++|++|+.+.+.+. .+++++
T Consensus 313 ------------g~v~-~~G--~KMSKS~GNvi~-p~d~i~~~GaDalR~~ll~~~~~~~d~~fs~~~~~~~~n~~l~~~ 376 (536)
T 4dlp_A 313 ------------GFLF-NRG--EKMSKSVGNVID-PFELVERYGLDQLRYFLMREVPFGQDGSYSHEAIVNRTNADLAND 376 (536)
T ss_dssp ------------CCEE-C--------------CC-HHHHHHHHCHHHHHHHHHHHSCTTSCEECCHHHHHHHHHHHCCCC
T ss_pred ------------eeEe-eCC--ceecccCCCCCC-HHHHHHHcCcHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 2222 244 799999999887 7778889999999999997 68889999999988654 356778
Q ss_pred HHhHHHHHH----hcccCCCCCCCcCCCCCChhhHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhHHHHHhh
Q 003799 612 LRGTLRYLL----GNLHDWRVGNSISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVA 687 (794)
Q Consensus 612 l~Nt~rfll----~nl~~~~~~~~~~~~~l~~~D~~il~~l~~lv~~v~~~~e~y~f~~ai~~l~~f~~~~lsn~Yle~~ 687 (794)
++|++++++ .++.++.|. ...+...|+|++++++++++.+.++|++|+|++|++.+++|+. ++|+|++..
T Consensus 377 l~N~~~R~~~~~~~~~~~~~p~----~~~~~~~d~~ll~~l~~~~~~v~~a~~~~~~~~a~~~l~~l~~--~~n~Y~~~~ 450 (536)
T 4dlp_A 377 LGNLAQRSLSMIAKNCEGKVPQ----PGAFSEADKAILDQADAALETARKAMDDQALHLALGAIFAVVA--EANRYFAGQ 450 (536)
T ss_dssp CHHHHHHHHHHHHHHSTTBCCC----CCCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCCCCCC----cccCCHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH--HHHHHHHhC
Confidence 888765443 444443332 2356789999999999999999999999999999999999983 899999999
Q ss_pred ccccccCCCChHhHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhCCCC
Q 003799 688 KDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFA 737 (794)
Q Consensus 688 K~rly~~~~d~~~r~s~~~vL~~iL~~l~~lLaP~~P~~aEEiw~~L~~~ 737 (794)
|+|.... .+..++.++..++.++|+.+++||+|||||+|||||++|+..
T Consensus 451 k~w~l~~-~~~~~~~~~~~~l~~~l~~~~~lL~P~~P~~aeei~~~L~~~ 499 (536)
T 4dlp_A 451 EPWALRK-TDPARMGTVLYVTAEVLRRVGIMVQPFIPQSAEKLLDILAVP 499 (536)
T ss_dssp CHHHHHH-HCHHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHTTTCC
T ss_pred CchhhcC-CCHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHcCCC
Confidence 9964432 234445667888999999999999999999999999999853
No 12
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=100.00 E-value=9.7e-56 Score=516.30 Aligned_cols=479 Identities=17% Similarity=0.195 Sum_probs=325.6
Q ss_pred cCCCCcEEEEcCCCCCCCcccchHHHhHHHHHHHHHHHHhCCCeeEEeccccCCCchHHHHHHhhchhhhhcCCCHHHHH
Q 003799 146 KNDGENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLR 225 (794)
Q Consensus 146 ~~~~~~f~i~~~pPy~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G~D~hGlpie~~~~k~~~~~~~~~~~~~~~~ 225 (794)
+.++++|++++|||||||.|||||+++++++|+++||+||+||+|.+++||||||+||+..++ +.+.++.++
T Consensus 14 ~~~~~~~~v~~~~py~ng~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~D~~G~~i~~~a~-------~~g~~~~~~- 85 (560)
T 3h99_A 14 TQVAKKILVTCASPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQ-------QLGITPEQM- 85 (560)
T ss_dssp ---CCEEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHH-------HHTSCHHHH-
T ss_pred CCCCCcEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCeEEEeeeecCcCcHHHHHHH-------HhCCCHHHH-
Confidence 346789999999999999999999999999999999999999999999999999999999987 346777665
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCccCCCCccccCChHHHHHHHHHHHHHHHcCCeeecccCceeccCCCccccccccccC
Q 003799 226 AKAAKFAKATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAEAELEYP 305 (794)
Q Consensus 226 ~~~~~~a~~~~~~~~~~~~~lGi~~dwd~~~~T~d~~~~~~v~~~f~~L~~kGlIy~~~~~v~w~~~~~t~Lae~Evey~ 305 (794)
++++.+.++++|++||| +||.+++|+++.|.+.++++|.+|+++|+||++.+.++||+.|+|+|+|.+|+
T Consensus 86 ------~~~~~~~~~~~~~~lgi--~~d~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~~~~~~~~~l~~~~v~-- 155 (560)
T 3h99_A 86 ------IGEMSQEHQTDFAGFNI--SYDNYHSTHSEENRQLSELIYSRLKENGFIKNRTISQLYDPEKGMFLPDRFVK-- 155 (560)
T ss_dssp ------HHHHHHHHHHHHHHTTC--CCSEEEESSSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCGGGEE--
T ss_pred ------HHHHHHHHHHHHHHcCC--CCCCceeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeEeecCccCceecchhcC--
Confidence 88889999999999999 88999999999999999999999999999999999999999999999999986
Q ss_pred CcccccccceeEEeccCCCCcccccccccCCccce--ec---cCCCCccccccE-EE----------------ECCCcc-
Q 003799 306 EGHVSRSIYAVFRMVSAPPSTSGLLNEFLPDLGLA--VW---TTTPWTVPANAA-VA----------------VNAKLQ- 362 (794)
Q Consensus 306 e~~~~~~~~v~F~l~~~~~~~~~~l~~~~~~~~l~--iw---TT~PwTi~~n~a-v~----------------v~p~~~- 362 (794)
|.|+.|.+. ..+++ .++.+...+....+. +. -++|......+. +- +.|+.+
T Consensus 156 -g~cp~c~~~----~~~gd-~ce~cg~~~~~~~l~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~ 229 (560)
T 3h99_A 156 -GTCPKCKSP----DQYGD-NCEVCGATYSPTELIEPKSVVSGATPVMRDSEHFFFDLPSFSEMLQAWTRSGALQEQVAN 229 (560)
T ss_dssp -EECTTTCCS----SEETT-BCTTTCCBCCGGGCEEEEETTTCCCCEEEEEEEEEECGGGGHHHHHHHHHTSCSCHHHHH
T ss_pred -CCCCCCCCc----ccccc-hhhhccccCChhhhcCCccccCCCCceEEecceEEEEHHHHHHHHHHHHHhCCCCHHHHH
Confidence 567666531 00000 011111100000000 00 011110000000 00 011100
Q ss_pred eeeeeecccccCCCCCcCCCCCCCCCcccCCcceEeeecccchHHHHHhcC-CceEEEeeeccCcccCCeeecCCCCCcc
Q 003799 363 YAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFIIVASDLVPTLEAKWG-TKLVIKKTLAGSDLENCRYVHPVDNRQC 441 (794)
Q Consensus 363 Y~~v~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~iv~~~~~~~~~~~~~-~~~~~~~~~~G~~L~g~~~~~Pl~~~~~ 441 (794)
...--+..++.|.++||+. ..||+++|.+.++.++||.++...+.+..+ .. .-.|....-..++ |.
T Consensus 230 ~~~~~l~~~l~D~~IsR~~--~~WG~~iP~~~~~viyvW~da~~~y~s~~~~~~-----~~~~~~~~~~~~w-p~----- 296 (560)
T 3h99_A 230 KMQEWFESGLQQWDISRDA--PYFGFEIPNAPGKYFYVWLDAPIGLMGSFKNLC-----DKRGDSVSFDEYW-KK----- 296 (560)
T ss_dssp HHHHHHHHCCCCEECEEES--SCSSCBCTTCTTEEECHHHHHHHHHHHHHHHHH-----HHHTCSSHHHHHH-BT-----
T ss_pred HHHHHHhcCCCCCCccccC--CcCCeeCCCCCCceEEeCcccchhHHHHHHHHh-----hccCChhhHHHhC-cC-----
Confidence 0000012357788888854 479999999999999999998877754321 00 0001000000111 11
Q ss_pred cEEeccCcccccCCCCceeecCCCChhhHHHHHHhCCCccccCCCCCccccccCCCCCccccccchHHHHHHHHhcCCcc
Q 003799 442 PVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPILSPVDDEGKFTEEAGKFSGLDVLGDGNVAVVKYLDEQMSLI 521 (794)
Q Consensus 442 pvvi~~~~V~~~~GTG~Vh~aPaHg~~D~~~~~~~gl~i~~~vd~~G~~~~~~~~~~G~~v~~ea~~~ii~~L~~~g~l~ 521 (794)
+..+.+||.. |+|.-- |++. -....|...|...
T Consensus 297 -----------~~~~~~~~~~-G~D~~~---------------------------fh~~--------~~~a~l~~~g~~~ 329 (560)
T 3h99_A 297 -----------DSTAELYHFI-GKDIVY---------------------------FLSL--------FWPAMLEGSNFRK 329 (560)
T ss_dssp -----------TCCSEEEEEE-EGGGHH---------------------------HHHT--------HHHHHHHHTTBCC
T ss_pred -----------CCCceeEEEe-ccccch---------------------------hHHH--------HHHHHHHhCCCCC
Confidence 1111222221 111100 0000 0112333333322
Q ss_pred cccccccccccccCCCCcEEEcccCccccchhhHHHHHHhhhcCeeecCCCCCCCCCCchhhhhhhhcC-CC-CceecCh
Q 003799 522 MEEPYEHKYPYDWRTKKPTIFRATEQWFASVEGFRQAAMDAIGQVKWVPPQEAPGYGADVLRLWVSSVD-YT-GDVMIGP 599 (794)
Q Consensus 522 ~~~~~~h~yp~~WRt~~pii~r~t~QWfi~~~~~~~~~l~~i~~v~~~P~~~~~~yGaD~lRl~las~~-~~-~Di~~s~ 599 (794)
+...+.|.+ . .+++ +||+++.+|+.+ |.+++++||+|++|||+++.. .+ .|++|+.
T Consensus 330 p~~v~~hg~------------------v-~~~G--~KMSKS~GNvv~-p~d~i~~~GaDalR~~ll~~~~~~~~d~~f~~ 387 (560)
T 3h99_A 330 PSNLFVHGY------------------V-TVNG--AKMSKSRGTFIK-ASTWLNHFDADSLRYYYTAKLSSRIDDIDLNL 387 (560)
T ss_dssp CSEEEEECC------------------E-EETT--EECCTTTTCCCB-HHHHHHHSCHHHHHHHHHHHCCSSCCCEEECH
T ss_pred CcEEEEEeE------------------E-EeCC--eeccccCCCcCC-HHHHHHHcCcHHHHHHHHHhCCCCCCCCCcCH
Confidence 222222322 1 1233 688999999877 777888999999999998764 45 7999999
Q ss_pred HHHHH--HHHHHHHHHhHHHHHHhcccCCCCCCCcCCCCCChhhHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Q 003799 600 QVLRQ--MSDIYRKLRGTLRYLLGNLHDWRVGNSISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIV 677 (794)
Q Consensus 600 ~~l~~--~~~~~~kl~Nt~rfll~nl~~~~~~~~~~~~~l~~~D~~il~~l~~lv~~v~~~~e~y~f~~ai~~l~~f~~~ 677 (794)
+.+.. ..+++++++|++.++++.+.+... ..++ ....|+|+++++++++++++++|++|+|+.|++.+++|+.
T Consensus 388 ~~~~~~~~~~l~~~l~n~~~R~~~~~~~~~~-~~~~---~~~~d~~ll~~l~~~~~~v~~~~e~~~~~~a~~~l~~l~~- 462 (560)
T 3h99_A 388 EDFVQRVNADIVNKVVNLASRNAGFINKRFD-GVLA---SELADPQLYKTFTDAAEVIGEAWESREFGKAVREIMALAD- 462 (560)
T ss_dssp HHHHHHHHHHCCCCCTHHHHTTHHHHHHHST-TBCC---SSCSCHHHHHHHHHTHHHHHHHHHTTCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCC---CccccHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH-
Confidence 87754 456778899977544433321111 1111 1357999999999999999999999999999999999983
Q ss_pred hhhHHHHHhhccccccCC-CChHhHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhCCC
Q 003799 678 DLSNFYFDVAKDRLYTGG-TTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPF 736 (794)
Q Consensus 678 ~lsn~Yle~~K~rly~~~-~d~~~r~s~~~vL~~iL~~l~~lLaP~~P~~aEEiw~~L~~ 736 (794)
++|+|++..|+|.+.++ .+..++.+++.++.++|+.+++||+|||||+|||||++|+.
T Consensus 463 -~~n~Yi~~~kpw~l~k~~~~~~~~~~~~~~~~~~l~~~~~lL~P~~P~~aeei~~~L~~ 521 (560)
T 3h99_A 463 -LANRYVDEQAPWVVAKQEGRDADLQAICSMGINLFRVLMTYLKPVLPKLTERAEAFLNT 521 (560)
T ss_dssp -HHHHHHHHHCHHHHTTSTTCHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHTS
T ss_pred -HHHHHHHhcCchhhcCCcCcHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHcCC
Confidence 89999999999966543 33445566777889999999999999999999999999973
No 13
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*
Probab=100.00 E-value=7.2e-56 Score=510.75 Aligned_cols=452 Identities=19% Similarity=0.235 Sum_probs=300.1
Q ss_pred CCcEEEEcCCCCCCCcccchHHHhHHHHHHHHHHHHhCCCeeEEeccccCCCchHHHHHHhhchhhhhcCCCHHHHHHHH
Q 003799 149 GENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKA 228 (794)
Q Consensus 149 ~~~f~i~~~pPy~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G~D~hGlpie~~~~k~~~~~~~~~~~~~~~~~~~ 228 (794)
+++|+++.|||||||.|||||+++++++|+++||++|+||+|++++||||||+||+.++++ .+.+|.++
T Consensus 4 ~~~~~i~~p~py~ng~lHiGH~~~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~-------~g~~~~~~---- 72 (497)
T 2csx_A 4 MKKFYVTTPIYYVNDVPHLGHAYTTIAADTIARYYRLRDYDVFFLTGTDEHGLKIQKKAEE-------LGISPKEL---- 72 (497)
T ss_dssp SCEEEEEEEEEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHTHHHH-------SSSCHHHH----
T ss_pred CCcEEEecCCCCCCCccchhhHHHHHHHHHHHHHHHhcCCceeeecccCCCcHHHHHHHHH-------cCCCHHHH----
Confidence 4789999999999999999999999999999999999999999999999999999999873 46677654
Q ss_pred HHHHHHHHHHHHHHHHHcCCccCCCCccccCChHHHHHHHHHHHHHHHcCCeeecccCceeccCCCccccccccccCCcc
Q 003799 229 AKFAKATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAEAELEYPEGH 308 (794)
Q Consensus 229 ~~~a~~~~~~~~~~~~~lGi~~dwd~~~~T~d~~~~~~v~~~f~~L~~kGlIy~~~~~v~w~~~~~t~Lae~Evey~e~~ 308 (794)
++++++.+++++++||| +||.+++|+++.|.+.++++|.+|+++|+||++.++++||+.|+|++++.|++. .|+
T Consensus 73 ---~~~~~~~~~~~~~~lgi--~~d~~~~t~~~~~~~~~~~~~~~L~~~G~iY~~~~~~~~~~~~~~~~~~~~~~~-~~~ 146 (497)
T 2csx_A 73 ---VDRNAERFKKLWEFLKI--EYTKFIRTTDPYHVKFVQKVFEECYKRGDIYLGEYEGWYCVGCEEFKSEAELAE-DHT 146 (497)
T ss_dssp ---HHHHHHHHHHHHHHTTC--CCSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEC-----------------------
T ss_pred ---HHHHHHHHHHHHHHhCC--cCCCCccCCCHHHHHHHHHHHHHHHHCCCEEecceeeccCcccCeEccHHHhcc-CCC
Confidence 88999999999999999 788899999999999999999999999999999999999999999999999963 145
Q ss_pred cccccc---------eeEEeccCCCCcccccccccCCccceeccCCCCccccccEEEECCCcce-eeee-ecccccCCCC
Q 003799 309 VSRSIY---------AVFRMVSAPPSTSGLLNEFLPDLGLAVWTTTPWTVPANAAVAVNAKLQY-AVVE-IQSLLEGDSA 377 (794)
Q Consensus 309 ~~~~~~---------v~F~l~~~~~~~~~~l~~~~~~~~l~iwTT~PwTi~~n~av~v~p~~~Y-~~v~-~~~~~~~~s~ 377 (794)
|+.|.. .+|+++++++.+.+.+++ .|.. +.|+... .+.. +..++.|..+
T Consensus 147 c~~~~~~~~~~~~~~wf~~l~~~~~~l~~~~~~------------~~~~--------~~p~~~~~~~~~~l~~~~~Dw~i 206 (497)
T 2csx_A 147 CPIHQKKCEYIKEPSYFFRLSKYQDKLLELYEK------------NPEF--------IQPDYRRNEIISFVKQGLKDLSV 206 (497)
T ss_dssp -----------CCEEEEECTTSSHHHHHHHHHH------------CTTS--------BCSHHHHHHHHHHHHHCCCCEEC
T ss_pred CCCCCCCCeEEecCceEEEcHHHHHHHHHHHHh------------CCCe--------eCcHHHHHHHHHHHhcCCccccc
Confidence 654432 235555443322221111 1111 1121100 0000 1224567888
Q ss_pred CcCCCCCCCCCcccCCcceEeeecccchHHHHHhcCCceEEEeeeccCcccCCeeecCCCCCcccEEeccCcccccCCCC
Q 003799 378 APANKKSRPGNVLKDQKKVFIIVASDLVPTLEAKWGTKLVIKKTLAGSDLENCRYVHPVDNRQCPVVIGGDYITTESGTG 457 (794)
Q Consensus 378 ~~~~~~~~~g~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~G~~L~g~~~~~Pl~~~~~pvvi~~~~V~~~~GTG 457 (794)
||+.++..||+++|.+.+.+++||.|++..+...... .+ ..++ |. .+.+ .+.|.+-
T Consensus 207 sR~~~~~~WG~~iP~~~~~~i~vW~ds~~~~~s~~~~----------~~---~~~~-p~---di~~-~G~D~~~------ 262 (497)
T 2csx_A 207 TRPRSRVKWGIPVPFDPEHTIYVWFDALFNYISALED----------KV---EIYW-PA---DLHL-VGKDILR------ 262 (497)
T ss_dssp EEETTTCCSSEEETTEEEEEECSHHHHHTHHHHTTTT----------TH---HHHC-SC---SCEE-EEGGGHH------
T ss_pred cccCCCCCCceecCCCCCceEEEecccchhhcccCCC----------cc---hhhC-Cc---eEEE-eecchhH------
Confidence 8877788899999987778889998876665432100 00 0111 22 1112 2222211
Q ss_pred ceeecCCCChhhHHHHHHhCCCccccCCCCCccccccCCCCCccccccchHHHHHHHHhcCCcccccccccccccccCCC
Q 003799 458 LVHTAPGHGQEDYVTSLKYGLPILSPVDDEGKFTEEAGKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTK 537 (794)
Q Consensus 458 ~Vh~aPaHg~~D~~~~~~~gl~i~~~vd~~G~~~~~~~~~~G~~v~~ea~~~ii~~L~~~g~l~~~~~~~h~yp~~WRt~ 537 (794)
.|.......+...|.+. ....+.|.
T Consensus 263 ------~H~~~~~a~l~~~g~~~-----------------------------------------~~~~~~~G-------- 287 (497)
T 2csx_A 263 ------FHTVYWPAFLMSLGYEL-----------------------------------------PKKVFAHG-------- 287 (497)
T ss_dssp ------HHHTHHHHHHHHHTCCC-----------------------------------------CSCEEEEC--------
T ss_pred ------hHHHHHHHHHHHcCCCC-----------------------------------------CcEEEECc--------
Confidence 11111111111222211 11111111
Q ss_pred CcEEEcccCccccchhhHHHHHHhhhcCeeecCCCCCCCCCCchhhhhhhh-cCCCCceecChHHHHHHHH--HHHHHHh
Q 003799 538 KPTIFRATEQWFASVEGFRQAAMDAIGQVKWVPPQEAPGYGADVLRLWVSS-VDYTGDVMIGPQVLRQMSD--IYRKLRG 614 (794)
Q Consensus 538 ~pii~r~t~QWfi~~~~~~~~~l~~i~~v~~~P~~~~~~yGaD~lRl~las-~~~~~Di~~s~~~l~~~~~--~~~kl~N 614 (794)
|+.+++ +||+++.+|+.+ |.+++++||+|++|||+++ +++.+|++|+++.+.+..+ +.++|+|
T Consensus 288 -----------~v~~~G--~KMSKS~GN~i~-~~dli~~~g~DalR~~ll~~~~~~~d~~fs~~~l~~~~~~~l~~~l~n 353 (497)
T 2csx_A 288 -----------WWTVEG--KKMSKTLGNVVD-PYEVVQEYGLDEVRYFLLREVPFGQDGDFSKKAILNRINGELANEIGN 353 (497)
T ss_dssp -----------CEESSS--SBCCTTTTCCCC-HHHHHHHHCHHHHHHHHHHSSCTTSCEECCHHHHHHHHHHTCCCCCHH
T ss_pred -----------EEEeCC--ceeCCcCCCCCC-HHHHHHHCCcHHHHHHHHhcCCcccCCCCChHHHHHHHHHHHHHHHHH
Confidence 111233 578888888776 6667789999999999997 6899999999998876532 3456677
Q ss_pred HHHHHHhcccCCCCCCCcCCCCCChhhHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhHHHHHhhccccccC
Q 003799 615 TLRYLLGNLHDWRVGNSISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRLYTG 694 (794)
Q Consensus 615 t~rfll~nl~~~~~~~~~~~~~l~~~D~~il~~l~~lv~~v~~~~e~y~f~~ai~~l~~f~~~~lsn~Yle~~K~rly~~ 694 (794)
++.++...+.++... .++ ...|+|++++++++++.+.++|++|+|+.|++.+++|+. ++|+|++..|+|....
T Consensus 354 ~~~R~~~~~~~~~~~-~~~----~~~d~~l~~~l~~~~~~v~~~~~~~~~~~a~~~l~~l~~--~~n~y~~~~k~~~~~~ 426 (497)
T 2csx_A 354 LYSRVVNMAHKFLGG-EVS----GARDEEYAKIAQESIKNYENYMEKVNFYKAIEEILKFTS--YLNKYVDEKQPWALNK 426 (497)
T ss_dssp HHHHHHHHHHHHSTT-CBC----CCCCTTHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--HHHHHHHHHCHHHHHT
T ss_pred HHHHHHHHHHHhcCC-CCC----chhHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH--HHHHHHHhcCchhhcc
Confidence 665554443322111 111 457899999999999999999999999999999999995 7999999999986544
Q ss_pred CCChHhHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhCCCC
Q 003799 695 GTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFA 737 (794)
Q Consensus 695 ~~d~~~r~s~~~vL~~iL~~l~~lLaP~~P~~aEEiw~~L~~~ 737 (794)
+.+..+..++..++.++|+.+++||+|||||+|||||++|+..
T Consensus 427 ~~~~~~~~~~~~~~~~~l~~~~~ll~P~~P~~aeei~~~L~~~ 469 (497)
T 2csx_A 427 ERKKEELQKVLYALVDGLFVLTHLLYPITPNKMKEALQMLGEK 469 (497)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHTTCS
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHhcCccCHHHHHHHHHcCCC
Confidence 3333334456677888999999999999999999999999753
No 14
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=100.00 E-value=4.2e-55 Score=507.51 Aligned_cols=461 Identities=18% Similarity=0.230 Sum_probs=317.4
Q ss_pred CCCcEEEEcCCCCCCCcccchHHHhHHHHHHHHHHHHhCCCeeEEeccccCCCchHHHHHHhhchhhhhcCCCHHHHHHH
Q 003799 148 DGENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAK 227 (794)
Q Consensus 148 ~~~~f~i~~~pPy~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G~D~hGlpie~~~~k~~~~~~~~~~~~~~~~~~ 227 (794)
|++.|++++|||||||.||||||++++++|+++||++|+||+|.+++||||||+||+.++++ .+.+|.++
T Consensus 10 ~~~~~~i~t~~P~~ng~lHiGHa~~~i~~D~l~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~-------~g~~~~~~--- 79 (524)
T 2x1l_A 10 GSEPFYITTAIAYPNGVPHIGHAYEYIATDAIARFKRLDGYDVRYLTGTDVHGQKMAETAAK-------EGIPAAEL--- 79 (524)
T ss_dssp -CCEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHH-------HTSCHHHH---
T ss_pred CCCCEEEeeCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCceeeeCCcCcccHHHHHHHHH-------cCCCHHHH---
Confidence 56789999999999999999999999999999999999999999999999999999999874 35667554
Q ss_pred HHHHHHHHHHHHHHHHHHcCCccCCCCccccCChHHHHHHHHHHHHHHHcCCeeecccCceeccCCCccccccccccCC-
Q 003799 228 AAKFAKATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAEAELEYPE- 306 (794)
Q Consensus 228 ~~~~a~~~~~~~~~~~~~lGi~~dwd~~~~T~d~~~~~~v~~~f~~L~~kGlIy~~~~~v~w~~~~~t~Lae~Evey~e- 306 (794)
++++++.+++++++||| ++|.+++|+++.|.+.++++|.+|+++|+||++.++|+||+.|+|++++.|+++.+
T Consensus 80 ----~~~~~~~~~~~~~~lgi--~~d~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~v~~~~~~~t~l~~~ev~~g~~ 153 (524)
T 2x1l_A 80 ----ARRNSDVFQRLQEKLNI--SFDRFIRTSDADHYEASKAIWKRMADAGDIYLDAYKGWYSIRDERFFTENETTEQPD 153 (524)
T ss_dssp ----HHHHHHHHHHHHHHTTC--CCSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGEEECTT
T ss_pred ----HHHHHHHHHHHHHHcCC--cCCCCeecCCHHHHHHHHHHHHHHHHCCCEEeeeeeeeccCccCccccHHHhccCCC
Confidence 88899999999999999 77899999999999999999999999999999999999999999999999997532
Q ss_pred c-ccc-cccc---------eeEEeccCCCCcccccccccCCccceeccCCCCccccccEEEECCCcce--eeeeeccccc
Q 003799 307 G-HVS-RSIY---------AVFRMVSAPPSTSGLLNEFLPDLGLAVWTTTPWTVPANAAVAVNAKLQY--AVVEIQSLLE 373 (794)
Q Consensus 307 ~-~~~-~~~~---------v~F~l~~~~~~~~~~l~~~~~~~~l~iwTT~PwTi~~n~av~v~p~~~Y--~~v~~~~~~~ 373 (794)
| .|+ .|.. .+|+++++.+.+.+.+++ .|. .+.|+... ..-.+..++.
T Consensus 154 G~~c~~~~g~~v~~~~~~qwF~~l~~~~~~l~~~~~~------------~~~--------~i~p~~~~~~~~~~~~~~l~ 213 (524)
T 2x1l_A 154 GTRIATETGAPVTWTEEQTYFFRLSAYTDRLLALYEE------------HPE--------FIGPDARRNEIVSFVSGGLK 213 (524)
T ss_dssp SCEEETTTCCBEEEEEEEEEEECGGGSHHHHHHHHHH------------CGG--------GEESHHHHHHHHHHHTTCCC
T ss_pred CCccccccCCcceEEecCCeEeeHHHHHHHHHHHHHh------------CCC--------eeCCHHHHHHHHHHHHcCCc
Confidence 1 122 2211 134454433222111110 000 01122100 0000113466
Q ss_pred CCCCCcCCCCCCCCCcccCCcceEeeecccchHHHHHhcCCceEEEeeeccC-cccCCeeecCCCCCcccEEeccCcccc
Q 003799 374 GDSAAPANKKSRPGNVLKDQKKVFIIVASDLVPTLEAKWGTKLVIKKTLAGS-DLENCRYVHPVDNRQCPVVIGGDYITT 452 (794)
Q Consensus 374 ~~s~~~~~~~~~~g~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~G~-~L~g~~~~~Pl~~~~~pvvi~~~~V~~ 452 (794)
|.++|| +|..||+++|.+.++.++||.++...+....|...+ .+ ++ ..++ |. .+.+ .+.|.+
T Consensus 214 Dw~iSR--qr~~WG~~iP~~~~~~~yvWfds~~~~~~~~g~p~~------~~~~~--~~~~-p~---di~~-~G~D~~-- 276 (524)
T 2x1l_A 214 DLSISR--TTFDWGVPVPDHPDHVMYVWVDALTNYLTGVGFPDT------ESESF--RRYW-PA---DLHM-IGKDII-- 276 (524)
T ss_dssp CEECEE--SSCCSSCEETTEEEEEECHHHHHHTHHHHTTTTTCT------TSHHH--HHHC-SC---SEEE-EEGGGH--
T ss_pred ccceEC--CCCCcCccCCCCCCCEEEEecCCchHHHHHcCCCCC------chHHH--HhhC-CC---eEEE-Eeechh--
Confidence 777887 356799999977778899998776555433222100 00 00 0000 10 1111 111110
Q ss_pred cCCCCceeecCCCChhhHHHHHHhCCCccccCCCCCccccccCCCCCccccccchHHHHHHHHhcCCccccccccccccc
Q 003799 453 ESGTGLVHTAPGHGQEDYVTSLKYGLPILSPVDDEGKFTEEAGKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPY 532 (794)
Q Consensus 453 ~~GTG~Vh~aPaHg~~D~~~~~~~gl~i~~~vd~~G~~~~~~~~~~G~~v~~ea~~~ii~~L~~~g~l~~~~~~~h~yp~ 532 (794)
..|.. + .+..|...|.......+.|.+
T Consensus 277 ----------~fh~~--~---------------------------------------~~a~l~~~g~~~~~~v~~hG~-- 303 (524)
T 2x1l_A 277 ----------RFHTV--Y---------------------------------------WPAFLMSAGLPLPKRIFAHGW-- 303 (524)
T ss_dssp ----------HHHHT--H---------------------------------------HHHHHHHHTCCCCSCEEEECC--
T ss_pred ----------HhHHH--H---------------------------------------HHHHHHHCCCCCCcEEEECcE--
Confidence 00111 0 112222233222222222211
Q ss_pred ccCCCCcEEEcccCccccchhhHHHHHHhhhcCeeecCCCCCCCCCCchhhhhhhh-cCCCCceecChHHHHHHHH--HH
Q 003799 533 DWRTKKPTIFRATEQWFASVEGFRQAAMDAIGQVKWVPPQEAPGYGADVLRLWVSS-VDYTGDVMIGPQVLRQMSD--IY 609 (794)
Q Consensus 533 ~WRt~~pii~r~t~QWfi~~~~~~~~~l~~i~~v~~~P~~~~~~yGaD~lRl~las-~~~~~Di~~s~~~l~~~~~--~~ 609 (794)
+..++ +||+++.+|+.+ |.+++++||+|++|||+++ +++.+|++|+++.+.+..+ +.
T Consensus 304 -----------------v~~~G--~KMSKS~GN~v~-p~d~i~~~g~DalR~~ll~~~~~~~d~~fs~~~l~~~~~~~l~ 363 (524)
T 2x1l_A 304 -----------------LLNRG--EKMSKSIGNVVD-PVNLVDTFGLDQVRYFLLREVPFGQDGSYNEDAIIGRVNADLA 363 (524)
T ss_dssp -----------------EEECS--CSEETTTEESSC-HHHHHHHHCHHHHHHHHHHHSCTTSCEEECHHHHHHHHHHCCC
T ss_pred -----------------EEeCC--cccCCcCCCCCC-HHHHHHHcChHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHH
Confidence 11233 688899998776 6667889999999999997 7899999999999887654 34
Q ss_pred HHHHhHHHHHHhcccCCCCCCCcC-CCCCChhhHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhHHHHHhhc
Q 003799 610 RKLRGTLRYLLGNLHDWRVGNSIS-YDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAK 688 (794)
Q Consensus 610 ~kl~Nt~rfll~nl~~~~~~~~~~-~~~l~~~D~~il~~l~~lv~~v~~~~e~y~f~~ai~~l~~f~~~~lsn~Yle~~K 688 (794)
++|+|.++++...+.+... ..++ ...+.+.|+|++++++++++.+.++|++|+|+.|++.|++|++ ++|+|++..|
T Consensus 364 n~l~n~~~r~~~~~~~~~~-~~~~~~~~~~~~d~~l~~~l~~~~~~v~~a~~~~~~~~a~~~l~~l~~--~~n~y~~~~k 440 (524)
T 2x1l_A 364 NELGNLAQRSLSMVAKNLG-AAVPDPGEFTDEDTALLAAADALLERVREHFDVPAMHLALEAIWSVLG--AANRYFSAQE 440 (524)
T ss_dssp CCCHHHHHHHHHHHHHHST-TBCCCCCCCCHHHHHHHHHHHTHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhcC-CCCCCccccchhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HHHHHHHhcC
Confidence 5567766554433221100 1111 2345788999999999999999999999999999999999986 7899999999
Q ss_pred cccccCCC---ChHhHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhCCCC
Q 003799 689 DRLYTGGT---TSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFA 737 (794)
Q Consensus 689 ~rly~~~~---d~~~r~s~~~vL~~iL~~l~~lLaP~~P~~aEEiw~~L~~~ 737 (794)
+|....+. +..+..++..++.++++.+++||+|||||+|||||++|+..
T Consensus 441 ~w~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~ll~P~~P~~aeei~~~L~~~ 492 (524)
T 2x1l_A 441 PWVLRKSDAAEDQQRFRTVLYTTLEVVRIASLLLQPVMPESTAKLLDLLGQP 492 (524)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHHHTTCC
T ss_pred ChhhhcCccccCHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHcCCC
Confidence 97433322 22223345667888999999999999999999999999753
No 15
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A
Probab=100.00 E-value=2.2e-54 Score=498.98 Aligned_cols=454 Identities=16% Similarity=0.194 Sum_probs=317.7
Q ss_pred CcEEEEcCCCCCCCcccchHHHhHHHHHHHHHHHHhCCCeeEEeccccCCCchHHHHHHhhchhhhhcCCCHHHHHHHHH
Q 003799 150 ENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKAA 229 (794)
Q Consensus 150 ~~f~i~~~pPy~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G~D~hGlpie~~~~k~~~~~~~~~~~~~~~~~~~~ 229 (794)
++|+++.|||||||.|||||+++++++|+++||+||+||+|++++|||+||+||+.++.+ .+.+|.++
T Consensus 3 ~~~~i~~p~py~~g~lHiGH~r~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~-------~g~~~~~~----- 70 (500)
T 2d5b_A 3 KVFYVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQA-------AGEDPKAF----- 70 (500)
T ss_dssp CEEEEECCCEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHHHHHH-------HTSCHHHH-----
T ss_pred CcEEEecCCCCCCCCcchhhHHHHHHHHHHHHHHHcCCCceeeecccCCchHHHHHHHHH-------cCCCHHHH-----
Confidence 689999999999999999999999999999999999999999999999999999998874 35677654
Q ss_pred HHHHHHHHHHHHHHHHcCCccCCCCccccCChHHHHHHHHHHHHHHHcCCeeecccCceeccCCCccccccccccCCccc
Q 003799 230 KFAKATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAEAELEYPEGHV 309 (794)
Q Consensus 230 ~~a~~~~~~~~~~~~~lGi~~dwd~~~~T~d~~~~~~v~~~f~~L~~kGlIy~~~~~v~w~~~~~t~Lae~Evey~e~~~ 309 (794)
++++++.+++++++||+ +||.+++|+++.|.+.++++|.+|+++|+||++.++++|||.|+|++++.++. +|+|
T Consensus 71 --~~~~~~~~~~~~~~lgi--~~d~~~~t~~~~~~~~~~~~~~~L~~~G~iy~~~~~~~~~~~~~~~~~~~~l~--~g~c 144 (500)
T 2d5b_A 71 --VDRVSGRFKRAWDLLGI--AYDDFIRTTEERHKKVVQLVLKKVYEAGDIYYGEYEGLYCVSCERFYTEKELV--EGLC 144 (500)
T ss_dssp --HHHHHHHHHHHHHHTTC--CCSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCTTTSB--TTBC
T ss_pred --HHHHHHHHHHHHHHhCC--cCCCCcccCCHHHHHHHHHHHHHHHHCCCEEecceEEecCCCcCcccCchhcc--CCcC
Confidence 88899999999999999 77789999999999999999999999999999999999999999999999986 4667
Q ss_pred ccccce---------eEEeccCCCCcccccccccCCccceeccCCCCccccccEEEECCCcce-eee-eecccccCCCCC
Q 003799 310 SRSIYA---------VFRMVSAPPSTSGLLNEFLPDLGLAVWTTTPWTVPANAAVAVNAKLQY-AVV-EIQSLLEGDSAA 378 (794)
Q Consensus 310 ~~~~~v---------~F~l~~~~~~~~~~l~~~~~~~~l~iwTT~PwTi~~n~av~v~p~~~Y-~~v-~~~~~~~~~s~~ 378 (794)
++|... +|+++++++.+.+.+++ .|.. +.|+..- .+. -+..++.|..+|
T Consensus 145 ~~~~~~v~~~~~~~wf~~l~~~~~~l~~~~~~------------~~~~--------~~p~~~~~~~~~~l~~~l~Dw~iS 204 (500)
T 2d5b_A 145 PIHGRPVERRKEGNYFFRMEKYRPWLQEYIQE------------NPDL--------IRPEGYRNEVLAMLAEPIGDLSIS 204 (500)
T ss_dssp TTTCSBCEEEEEEEEEECGGGGHHHHHHHHHT------------CTTS--------EESHHHHHHHHHHHTSCCCCEECE
T ss_pred CCCCCeeeEEecCceEEEcHHHHHHHHHHHHh------------CCCe--------eCCHHHHHHHHHHHhcCCCCeecc
Confidence 765431 34554332222111111 1110 1121100 000 011345678888
Q ss_pred cCCCCCCCCCcccCCcceEeeecccchHHHHHhcCCceEEEeeeccCcccCCeeecCCCCCcccEEeccCcccccCCCCc
Q 003799 379 PANKKSRPGNVLKDQKKVFIIVASDLVPTLEAKWGTKLVIKKTLAGSDLENCRYVHPVDNRQCPVVIGGDYITTESGTGL 458 (794)
Q Consensus 379 ~~~~~~~~g~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~G~~L~g~~~~~Pl~~~~~pvvi~~~~V~~~~GTG~ 458 (794)
|+.++..||+++|.+.++.++||.++...+....|...+ .++ ..+. |. .+.+ .+.|.+-
T Consensus 205 Rp~~~~~WG~piP~~~~~v~~vWfds~~~y~~~~g~~~~-------~~~--~~~~-p~---di~~-~G~D~~~------- 263 (500)
T 2d5b_A 205 RPKSRVPWGIPLPWDENHVTFVWFDALLNYVSALDYPEG-------EAY--RTFW-PH---AWHL-IGKDILK------- 263 (500)
T ss_dssp EETTTCCSSCEETTEEEEEECHHHHHHTHHHHTTTTTTC-------HHH--HHHG-GG---EEEE-EEGGGHH-------
T ss_pred cccccccCccccCCCCCCeeEEccccchhhHHHcCCCCC-------chH--HHcC-CC---eEEE-Eeechhh-------
Confidence 877788899999988888999998887666543332100 000 0000 10 1111 1111110
Q ss_pred eeecCCCChhhHHHHHHhCCCccccCCCCCccccccCCCCCccccccchHHHHHHHHhcCCcccccccccccccccCCCC
Q 003799 459 VHTAPGHGQEDYVTSLKYGLPILSPVDDEGKFTEEAGKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTKK 538 (794)
Q Consensus 459 Vh~aPaHg~~D~~~~~~~gl~i~~~vd~~G~~~~~~~~~~G~~v~~ea~~~ii~~L~~~g~l~~~~~~~h~yp~~WRt~~ 538 (794)
.|.. |+ +..|...|.......+.|
T Consensus 264 -----fh~~--~~---------------------------------------~a~~~~~g~~~~~~v~~~---------- 287 (500)
T 2d5b_A 264 -----PHAV--FW---------------------------------------PTMLKAAGIPMYRHLNVG---------- 287 (500)
T ss_dssp -----HHHT--HH---------------------------------------HHHHHHHTCCCCSEEEEE----------
T ss_pred -----hHHH--HH---------------------------------------HHHHHHcCCCCCcEEEEC----------
Confidence 1111 10 112222222111111111
Q ss_pred cEEEcccCccccchhhHHHHHHhhhcCeeecCCCCCCCCCCchhhhhhhh-cCCCCceecChHHHHHHHH--HHHHHHhH
Q 003799 539 PTIFRATEQWFASVEGFRQAAMDAIGQVKWVPPQEAPGYGADVLRLWVSS-VDYTGDVMIGPQVLRQMSD--IYRKLRGT 615 (794)
Q Consensus 539 pii~r~t~QWfi~~~~~~~~~l~~i~~v~~~P~~~~~~yGaD~lRl~las-~~~~~Di~~s~~~l~~~~~--~~~kl~Nt 615 (794)
+|...-++ +||+++.+|+.+ |.+++++||+|++|||+++ +++.+|++|+++.+.+..+ +.++++|+
T Consensus 288 --------G~v~~~~G--~KMSKS~GN~i~-p~d~i~~~g~DalR~~ll~~~~~~~d~~fs~~~~~~~~~~~l~~~l~n~ 356 (500)
T 2d5b_A 288 --------GFLLGPDG--RKMSKTLGNVVD-PFALLEKYGRDALRYYLLREIPYGQDTPVSEEALRTRYEADLADDLGNL 356 (500)
T ss_dssp --------CCEECTTS--SCCCTTTTCCCC-HHHHHHHHCHHHHHHHHHHHSCTTSCEECCHHHHHHHHHHHCCCCCHHH
T ss_pred --------ceEEeCCC--CcccccCCCCCC-HHHHHHhcCcHHHHHHHHhcCCcccCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 11111133 588899998877 6667889999999999997 6899999999998876543 34556666
Q ss_pred HHHHHhcccCCCCCCCcCCCCCChhhHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhHHHHHhhccccccCC
Q 003799 616 LRYLLGNLHDWRVGNSISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRLYTGG 695 (794)
Q Consensus 616 ~rfll~nl~~~~~~~~~~~~~l~~~D~~il~~l~~lv~~v~~~~e~y~f~~ai~~l~~f~~~~lsn~Yle~~K~rly~~~ 695 (794)
+.++...+.+... ..++.. .++|++++++++++.+.++|++|+|+.|++.|++|+. ++|+|++..|||.+..+
T Consensus 357 ~~r~~~~~~~~~~-~~~~~~----~~~~l~~~l~~~~~~v~~a~~~~~~~~a~~~l~~l~~--~~n~y~~~~k~w~~~~~ 429 (500)
T 2d5b_A 357 VQRTRAMLFRFAE-GRIPEP----VAGEELAEGTGLAGRLRPLVRELKFHVALEEAMAYVK--ALNRYINEKKPWELFKK 429 (500)
T ss_dssp HHHHHHHHHHHST-TBCCCC----CCCGGGGGGGGHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHHHhcC-CCCCch----hHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH--HHHHHHHhcCchhhccC
Confidence 5443332221111 111111 1489999999999999999999999999999999995 79999999999865432
Q ss_pred CChHhHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhCCCC
Q 003799 696 TTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFA 737 (794)
Q Consensus 696 ~d~~~r~s~~~vL~~iL~~l~~lLaP~~P~~aEEiw~~L~~~ 737 (794)
+..+..++..++.++++.++++|+|||||+|||||++|+..
T Consensus 430 -~~~~~~~~~~~l~~~l~~~~~ll~P~~P~~aeei~~~l~~~ 470 (500)
T 2d5b_A 430 -EPEEARAVLYRVVEGLRIASILLTPAMPDKMAELRRALGLK 470 (500)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHTTCC
T ss_pred -cHHHHHHHHHHHHHHHHHHHHHhhCcccHHHHHHHHHcCCC
Confidence 22233456677888999999999999999999999999753
No 16
>1wny_A Isoleucyl-tRNA synthetase; ligase, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Thermus thermophilus} PDB: 1wnz_A* 1wk8_A* 1udz_A 1ue0_A
Probab=100.00 E-value=7.1e-39 Score=320.99 Aligned_cols=182 Identities=36% Similarity=0.580 Sum_probs=158.1
Q ss_pred cccccceeEEeccCCCCcccccccccCCccceeccCCCCccccccEEEECCCcceeeeeecccccCCCCCcCCCCCCCCC
Q 003799 309 VSRSIYAVFRMVSAPPSTSGLLNEFLPDLGLAVWTTTPWTVPANAAVAVNAKLQYAVVEIQSLLEGDSAAPANKKSRPGN 388 (794)
Q Consensus 309 ~~~~~~v~F~l~~~~~~~~~~l~~~~~~~~l~iwTT~PwTi~~n~av~v~p~~~Y~~v~~~~~~~~~s~~~~~~~~~~g~ 388 (794)
.|+++||+|++.+... ....+.+++||||||||||||+||||||++.|+++...
T Consensus 2 ~S~~i~V~F~~~~~~~-------~~~~~~~l~i~TTrP~Tl~g~~aiav~p~~~y~~~~~~------------------- 55 (186)
T 1wny_A 2 QDPSVYVRFPLKEPKK-------LGLEKASLLIWTTTPWTLPGNVAAAVHPEYTYAAFQVG------------------- 55 (186)
T ss_dssp -CCEEEEEEEBSCGGG-------GTCSSEEEEEEESCGGGGGGCCEEEECTTSEEEEEEET-------------------
T ss_pred ccceEEEEEEeCCCcc-------ccCCCcEEEEEECCcchhhcceEEEECCCCcEEEEEeC-------------------
Confidence 5789999999964210 00124689999999999999999999999999988753
Q ss_pred cccCCcceEeeecccchHHHHHhcCCceEEEeeeccCcccCCeeecCCC---CCcccEEeccCcccccCCCCceeecCCC
Q 003799 389 VLKDQKKVFIIVASDLVPTLEAKWGTKLVIKKTLAGSDLENCRYVHPVD---NRQCPVVIGGDYITTESGTGLVHTAPGH 465 (794)
Q Consensus 389 ~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~G~~L~g~~~~~Pl~---~~~~pvvi~~~~V~~~~GTG~Vh~aPaH 465 (794)
++.+++++++++.+... +++++++++|.+|.|++|.||+. ++.+|| +.++||++++|||+||+||||
T Consensus 56 ------~~~~i~a~~~~~~~~~~---~~~~~~~~~G~~l~g~~~~~P~~~~~~~~ipi-~~~~~V~~~~GTG~V~~aPah 125 (186)
T 1wny_A 56 ------DEALILEEGLGRKLLGE---GTPVLKTFPGKALEGLPYTPPYPQALEKGYFV-VLADYVSQEDGTGIVHQAPAF 125 (186)
T ss_dssp ------TEEEEEEHHHHHHHHCT---TSCEEEEEEHHHHTTCBBCCSSCCCCSSCCBE-EECTTCCSSSSCSCEEECGGG
T ss_pred ------CcchHHHHHHHHHHhhc---CcEEEEEEEcccccCcEEECCccccCCCEEEE-EEeCcCcCCCCcccEEEcCCC
Confidence 36799999999988764 56788999999999999999996 889999 569999999999999999999
Q ss_pred ChhhHHHHHHhCCCccccCCCCCccccccCCCCCccccccchHHHHHHHHhcCCcccccccccc
Q 003799 466 GQEDYVTSLKYGLPILSPVDDEGKFTEEAGKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHK 529 (794)
Q Consensus 466 g~~D~~~~~~~gl~i~~~vd~~G~~~~~~~~~~G~~v~~ea~~~ii~~L~~~g~l~~~~~~~h~ 529 (794)
|++||++|++||||++++||++|+|+++ + |.|+++. +|++.|++.|+++|.+++.++|.|+
T Consensus 126 g~~D~~~~~~~~L~i~~~id~~G~~~~~-~-~~Gl~v~-~A~~~Ii~~L~~~g~l~~~~~~~Hs 186 (186)
T 1wny_A 126 GAEDLETARVYGLPLLKTVDEEGKLLVE-P-FKGLYFR-EANRAILRDLRGRGLLFKEESYLHS 186 (186)
T ss_dssp CHHHHHHHHHHTCCCCCCBCTTSBBCST-T-CTTCBHH-HHHHHHHHHHHHTTCEEEEEC----
T ss_pred CHHHHHHHHHcCCceEeeeCCCccCccC-C-CCCcCHH-HHHHHHHHHHHHCCCeecceeEEcC
Confidence 9999999999999999999999999987 7 9999996 9999999999999999999999985
No 17
>3o0a_A Leucyl-tRNA synthetase subunit alpha; CP1 hydrolytic DOM ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide- protein biosynthesis; 1.77A {Aquifex aeolicus} PDB: 3pz0_A 3pz5_A
Probab=100.00 E-value=1.1e-34 Score=296.82 Aligned_cols=169 Identities=21% Similarity=0.303 Sum_probs=137.0
Q ss_pred ccceeccCCCCccccccEEEECCCcceeeeeecccccCCCCCcCCCCCCCCCcccCCcceEeeecccchHHHHHhcCCce
Q 003799 337 LGLAVWTTTPWTVPANAAVAVNAKLQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFIIVASDLVPTLEAKWGTKL 416 (794)
Q Consensus 337 ~~l~iwTT~PwTi~~n~av~v~p~~~Y~~v~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~iv~~~~~~~~~~~~~~~~ 416 (794)
.+++||||||||||||++|||||++.|+++...... . + ..+.+++++++++.+.+..+.+.
T Consensus 38 ~~l~vwTTtPwTL~gn~~iav~pe~~yv~~~~~~~~----------~------~---~~~~~~~~~~~i~~~~~~~~~~~ 98 (219)
T 3o0a_A 38 IYIDVFTTRPDTVFGATFVVLAPEHPLVPVLACIGE----------R------L---GNACYSDVENFVEKMKKMSTRER 98 (219)
T ss_dssp EEEEEEESCGGGGGGCCEEEECTTCTHHHHHHHHHH----------H------T---TCCCHHHHHHHHHHHHTCCHHHH
T ss_pred CEEEEEECCcchhhcccEEEECCCCcEEEEEecCCc----------c------c---cchhHHHHHHHHHHHHhhccccc
Confidence 689999999999999999999999999977643100 0 0 00122677788887765544332
Q ss_pred EEEeeeccCcccCCeeecCCCCCcccEEeccCcccccCCCCceeecCCCChhhHHHHHHhCCCccccCCC-------CCc
Q 003799 417 VIKKTLAGSDLENCRYVHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPILSPVDD-------EGK 489 (794)
Q Consensus 417 ~~~~~~~G~~L~g~~~~~Pl~~~~~pvvi~~~~V~~~~GTG~Vh~aPaHg~~D~~~~~~~gl~i~~~vd~-------~G~ 489 (794)
.++.+++|. |.|++|.||++++++||| .++||++++|||+||+|||||++||++|++||||++++|++ +|.
T Consensus 99 ~~~~~~~G~-l~G~~~~~Pl~~~~iPI~-~adyV~~~~GTGaV~~aPaHd~~D~~~~~k~~Lpi~~vi~~~~~~~~~~g~ 176 (219)
T 3o0a_A 99 TMEEDKEGV-FLGVYATNPANGEKIPVW-SANYVLYEYGTGAIMCVPAHDQRDWEFAKKYDLPIKVVVKPEGAWDFEKGA 176 (219)
T ss_dssp HSCSSCCEE-EEEEEEECTTTCCEEEEE-EETTSCTTSTTSEEEECTTTCHHHHHHHHHHTCCCCCCEECSSCCCTTTCC
T ss_pred eeEEEeeeE-EcCCEEECCCCCCeeeEE-EecccccCCCCCeEEECCCCCHHHHHHHHHcCCCceeeeCCcccccccccc
Confidence 233778997 999999999999999995 49999999999999999999999999999999999999986 577
Q ss_pred cccc-----cCCCCCccccccchHHHHHHHHhcCCcccccccc
Q 003799 490 FTEE-----AGKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYE 527 (794)
Q Consensus 490 ~~~~-----~~~~~G~~v~~ea~~~ii~~L~~~g~l~~~~~~~ 527 (794)
|+.+ +++|.||++. +|++.|++.|+++|++.+.++|+
T Consensus 177 ft~~g~~~~~~~~~Gl~~~-eA~~~Ii~~L~~~g~l~~~~~yr 218 (219)
T 3o0a_A 177 YEGKGTLVNSDGFDGLDSE-TAKRKITEWLQDRGLGEKKVSYR 218 (219)
T ss_dssp CCSCCEECSCGGGTTCBHH-HHHHHHHHHHHHTTSEEEC----
T ss_pred ccccceEecCCCCCCCCHH-HHHHHHHHHHHHCCCeeeeeeec
Confidence 7765 4789999995 99999999999999999887764
No 18
>1wka_A Valyl-tRNA synthetase; editing, CP1, fidelity, thermus thrmophilus, translation, amino acid, structural genomics; 1.70A {Thermus thermophilus} SCOP: b.51.1.1 PDB: 1wk9_A*
Probab=100.00 E-value=2.9e-33 Score=269.31 Aligned_cols=140 Identities=24% Similarity=0.340 Sum_probs=125.5
Q ss_pred cccccceeEEeccCCCCcccccccccCCccceeccCCCCccccccEEEECCCcceeeeeecccccCCCCCcCCCCCCCCC
Q 003799 309 VSRSIYAVFRMVSAPPSTSGLLNEFLPDLGLAVWTTTPWTVPANAAVAVNAKLQYAVVEIQSLLEGDSAAPANKKSRPGN 388 (794)
Q Consensus 309 ~~~~~~v~F~l~~~~~~~~~~l~~~~~~~~l~iwTT~PwTi~~n~av~v~p~~~Y~~v~~~~~~~~~s~~~~~~~~~~g~ 388 (794)
.++++||+|++ +. +.+++||||||||||||+||||||++...
T Consensus 3 ~~~~~~v~F~~-~~-------------~~~l~i~TTrP~Tl~g~~aiav~P~~~~~------------------------ 44 (147)
T 1wka_A 3 PGKLYTLRYEV-EG-------------GGFIEIATVRPETVFADQAIAVHPEDERY------------------------ 44 (147)
T ss_dssp -CEEEEEEEEB-TT-------------SCEEEEEESCGGGGGGCCEEEECTTCTTT------------------------
T ss_pred cceEEEEEEEC-CC-------------CcEEEEEECCceecccceEEEECCCCchH------------------------
Confidence 46789999998 31 24799999999999999999999996410
Q ss_pred cccCCcceEeeecccchHHHHHhcCCceEEEeeeccCcccCCeeecCCCCCcccEEeccCcccccCCCCceeecCCCChh
Q 003799 389 VLKDQKKVFIIVASDLVPTLEAKWGTKLVIKKTLAGSDLENCRYVHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQE 468 (794)
Q Consensus 389 ~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~G~~L~g~~~~~Pl~~~~~pvvi~~~~V~~~~GTG~Vh~aPaHg~~ 468 (794)
++|+|++|.||++++++|| +.++||++++|||+||++||||++
T Consensus 45 ------------------------------------~~l~g~~~~~P~~~~~ipI-~~~~~V~~~~GTG~V~~~Pah~~~ 87 (147)
T 1wka_A 45 ------------------------------------RHLLGKRARIPLTEVWIPI-LADPAVEKDFGTGALKVTPAHDPL 87 (147)
T ss_dssp ------------------------------------GGGTTCEEECTTSSCEEEE-EECTTCCTTSTTSEEEECTTTCHH
T ss_pred ------------------------------------HHhcCCEEECCCCCCeeEE-EEeCccccCCCCCcEEEccCCCHH
Confidence 2588999999999999999 569999999999999999999999
Q ss_pred hHHHHHHhCCCccccCCCCCccccccCC----CCCccccccchHHHHHHHHhcCCccccccc
Q 003799 469 DYVTSLKYGLPILSPVDDEGKFTEEAGK----FSGLDVLGDGNVAVVKYLDEQMSLIMEEPY 526 (794)
Q Consensus 469 D~~~~~~~gl~i~~~vd~~G~~~~~~~~----~~G~~v~~ea~~~ii~~L~~~g~l~~~~~~ 526 (794)
||+++++||||++++||++|+| ++++ |.|+++. +|++.|++.|+++|.+++.+.|
T Consensus 88 D~~~~~~~~L~~~~~id~~G~~--~~~~~~~~~~Gl~~~-~A~~~Ii~~L~~~g~l~~~~~~ 146 (147)
T 1wka_A 88 DYEIGERHGLKPVSVINLEGRM--EGERVPEALRGLDRF-EARRKAVELFREAGHLVKEEDY 146 (147)
T ss_dssp HHHHHHHHTCCCCCSBCTTSBB--CSTTSCGGGTTSBHH-HHHHHHHHHHHHHTCEEEEEEC
T ss_pred HHHHHHHcCCCcceEECCCCEE--cCCCcccccCCcCHH-HHHHHHHHHHHHCCCeeeeeEc
Confidence 9999999999999999999999 6666 9999996 9999999999999999988775
No 19
>2wfg_A Cytosolic leucyl-tRNA synthetase; ligase, editing domain, hydrolysis of MIS-charged trnas, benzoxaborole, anti-fungal; HET: ZZB; 2.20A {Candida albicans} PDB: 2wfe_A*
Probab=99.98 E-value=2.4e-33 Score=294.40 Aligned_cols=170 Identities=21% Similarity=0.231 Sum_probs=141.8
Q ss_pred CccceeccCCCCccccccEEEECCCcceeeeeecccccCCCCCcCCCCCCCCCcccCCcceEeeecccchHHHHHhcCC-
Q 003799 336 DLGLAVWTTTPWTVPANAAVAVNAKLQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFIIVASDLVPTLEAKWGT- 414 (794)
Q Consensus 336 ~~~l~iwTT~PwTi~~n~av~v~p~~~Y~~v~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~iv~~~~~~~~~~~~~~- 414 (794)
+.+++||||||||||||+||||||++.|+++++. ++.++++.+++..+.+.++.
T Consensus 32 ~~~l~v~TTrP~TL~g~talav~Pe~~yv~v~~~-------------------------~~~~~i~~~~~~~~~~~~~~~ 86 (261)
T 2wfg_A 32 KVYLVAATLRPETMYGQTCCFVSPKIDYGVFDAG-------------------------NGDYFITTERAFKNMSFQNLT 86 (261)
T ss_dssp EEEEEEEESCGGGGGGCCEEEECTTCEEEEEECS-------------------------TTEEEEECHHHHHHHTTTTCS
T ss_pred CCEEEEEECCchHHhhhheEEECCCCceEEEEec-------------------------CceEEEhHHHHHHHHHHHhhh
Confidence 4689999999999999999999999999988763 23577777777777766552
Q ss_pred ----ceEEEeeeccCcccCCeeecCCC-CCcccEEeccCcccccCCCCceeecCCCChhhHHHHHH-------hC-----
Q 003799 415 ----KLVIKKTLAGSDLENCRYVHPVD-NRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLK-------YG----- 477 (794)
Q Consensus 415 ----~~~~~~~~~G~~L~g~~~~~Pl~-~~~~pvvi~~~~V~~~~GTG~Vh~aPaHg~~D~~~~~~-------~g----- 477 (794)
+++++.+++|.+|.|++|.||++ ++.+|| +.++||++++|||+||+|||||++||.+|++ ||
T Consensus 87 ~~~~~~~~~~~~~G~~L~G~~~~~Pl~~~~~ipV-~~adyV~~~~GTG~V~~vPaHd~~Dy~~~~kl~~~~~~ygi~~~~ 165 (261)
T 2wfg_A 87 PKRGYYKPLFTINGKTLIGSRIDAPYAVNKNLRV-LPMETVLATKGTGVVTCVPSDSPDDFVTTRDLANKPEYYGIEKDW 165 (261)
T ss_dssp SSTTCCCCSEEEEHHHHTTCEEECTTCSSCSEEE-EECTTCCTTSTTSCEEECTTTCHHHHHHHHHHHHSTTTTTCCGGG
T ss_pred hcccccEEEEEEecccccCCEEECCCCCCceeEE-EeeccccCCCCCCeeEEcCCCCHHHHHHHHHhhcchhhcCCcccc
Confidence 46778899999999999999998 578999 5699999999999999999999999999999 99
Q ss_pred --CCccccCCC--CC---------------------------------ccccc--cCCCCCccccccchHHHHHHHHhcC
Q 003799 478 --LPILSPVDD--EG---------------------------------KFTEE--AGKFSGLDVLGDGNVAVVKYLDEQM 518 (794)
Q Consensus 478 --l~i~~~vd~--~G---------------------------------~~~~~--~~~~~G~~v~~ea~~~ii~~L~~~g 518 (794)
||++++|+. +| +|+.. +++|.|+++. +|++.|++.|+++|
T Consensus 166 ~~L~i~~vId~~~~g~~~~~~~~~~~~i~s~~d~~~l~~a~~~~y~~G~~~g~~~~g~f~Gl~v~-eA~~~Ii~~L~~~G 244 (261)
T 2wfg_A 166 VQTDIVPIVHTEKYGDKCAEFLVNDLKIQSPKDSVQLANAKELAYKEGFYNGTMLIGKYKGDKVE-DAKPKVKQDLIDEG 244 (261)
T ss_dssp CCCCCCCCEEBTTTBTCHHHHHHHHTTCCSTTCHHHHHHHHHHHHHHHHHHCEECSSTTTTSBHH-HHHHHHHHHHHHTT
T ss_pred ccCCceeEEcCcccCccchhhhhccccccccchhhhhhhhhhhhhhcccccceEeccccCCeEHH-HHHHHHHHHHHHCC
Confidence 899999976 33 33322 6789999996 99999999999999
Q ss_pred Cccccccccccccc
Q 003799 519 SLIMEEPYEHKYPY 532 (794)
Q Consensus 519 ~l~~~~~~~h~yp~ 532 (794)
.+++...+.|+.-|
T Consensus 245 ~~~~~~~~~h~~~~ 258 (261)
T 2wfg_A 245 LAFVYNEPELEHHH 258 (261)
T ss_dssp SEEEECC-------
T ss_pred Ceeeeeeeeecccc
Confidence 99999999998744
No 20
>2ajg_A Leucyl-tRNA synthetase; editing domain, ligase; 2.00A {Escherichia coli} PDB: 2ajh_A 2aji_A
Probab=99.97 E-value=1.6e-32 Score=277.15 Aligned_cols=168 Identities=25% Similarity=0.300 Sum_probs=134.7
Q ss_pred cccccceeEEeccCCCCcccccccccCCccceeccCCCCccccccEEEECCCcceeeeeecccccCCCCCcCCCCCCCCC
Q 003799 309 VSRSIYAVFRMVSAPPSTSGLLNEFLPDLGLAVWTTTPWTVPANAAVAVNAKLQYAVVEIQSLLEGDSAAPANKKSRPGN 388 (794)
Q Consensus 309 ~~~~~~v~F~l~~~~~~~~~~l~~~~~~~~l~iwTT~PwTi~~n~av~v~p~~~Y~~v~~~~~~~~~s~~~~~~~~~~g~ 388 (794)
..++++|+|++.+ .+.+++||||||||||||+||||||++.|+++....
T Consensus 9 ~~~g~~v~F~~~~-------------~~~~l~i~TTrP~TL~g~~avav~P~~~yv~~~~~~------------------ 57 (196)
T 2ajg_A 9 MGEGVEITFNVND-------------YDNTLTVYTTRPDTFMGCTYLAVAAGHPLAQKAAEN------------------ 57 (196)
T ss_dssp --CEEEEEEEBTT-------------CSSEEEEEESCGGGGGGCCEEEECTTSHHHHHHHTT------------------
T ss_pred cCceEEEEEEeCC-------------CCcEEEEEECChhhhcCccEEEECCCCcEEEEEcCC------------------
Confidence 3578899999853 235799999999999999999999999998663210
Q ss_pred cccCCcceEeeecccchHHHHHhc----CCceEEEeeeccCcccCCeeecCCCCCcccEEeccCcccccCCCCceeecCC
Q 003799 389 VLKDQKKVFIIVASDLVPTLEAKW----GTKLVIKKTLAGSDLENCRYVHPVDNRQCPVVIGGDYITTESGTGLVHTAPG 464 (794)
Q Consensus 389 ~~~~~~~~~~iv~~~~~~~~~~~~----~~~~~~~~~~~G~~L~g~~~~~Pl~~~~~pvvi~~~~V~~~~GTG~Vh~aPa 464 (794)
.++++.+.+.. ..+.+++...+|.+|.|++|.||++++++||| .++||++++|||+||+|||
T Consensus 58 -------------~~~~~~~~~~~~~~~~~~~~~~~~~k~g~l~G~~~~~P~~~~~ipV~-~ad~V~~~~GTG~V~~aPa 123 (196)
T 2ajg_A 58 -------------NPELAAFIDECRNTKVAEAEMATMEKKGVDTGFKAVHPLTGEEIPVW-AANFVLMEYGTGAVMAVPG 123 (196)
T ss_dssp -------------CHHHHHHHHHHHHCCCCGGGGGGSCCCEEEEEEEEECTTTCCEEEEE-EETTCCSSSSCSEEEECTT
T ss_pred -------------HHHHHHHHHHhhcccccceEEEeeeeCCEEcCCEEECCCCCCeeEEE-EeCCCccCCCCceEEECCC
Confidence 12233333321 12334444344458999999999999999995 5999999999999999999
Q ss_pred CChhhHHHHHHhCCCccccCC---------CCCcccccc-----CCCCCccccccchHHHHHHHHhcCCccc
Q 003799 465 HGQEDYVTSLKYGLPILSPVD---------DEGKFTEEA-----GKFSGLDVLGDGNVAVVKYLDEQMSLIM 522 (794)
Q Consensus 465 Hg~~D~~~~~~~gl~i~~~vd---------~~G~~~~~~-----~~~~G~~v~~ea~~~ii~~L~~~g~l~~ 522 (794)
||++||++|++||||++++|+ ++|+|+.+. ++|.|+++. +|++.|++.|+++|++.+
T Consensus 124 h~~~D~~~~~k~~L~i~~vI~~~~g~~~d~~~g~y~~~g~~~ns~~~~Gl~v~-eA~~~Ii~~L~~~g~~~~ 194 (196)
T 2ajg_A 124 HDQRDYEFASKYGLNIKPVILAADGSEPDLSQQALTEKGVLFNSGEFNGLDHE-AAFNAIADKLTAMGVGER 194 (196)
T ss_dssp TCHHHHHHHHHHTCCCCCCBCCTTSSCCCCSSSCCCSCCCBCSSGGGTTCCHH-HHHHHHHHHHHHTTSEEE
T ss_pred CCHHHHHHHHHcCCCceeEEeCCcCcccccccccccCCceEecCcccCCeEHH-HHHHHHHHHHHHCCCcee
Confidence 999999999999999999996 578888764 679999996 999999999999998765
No 21
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii}
Probab=99.97 E-value=6.8e-31 Score=295.51 Aligned_cols=128 Identities=19% Similarity=0.231 Sum_probs=113.8
Q ss_pred CcEEEEcCCCCCCCcccchHHHhHHHHHHHHHHHHhCCCeeEEeccccCCCchHHHHHHhhchhhhhcCCCHHHHHHHHH
Q 003799 150 ENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKAA 229 (794)
Q Consensus 150 ~~f~i~~~pPy~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G~D~hGlpie~~~~k~~~~~~~~~~~~~~~~~~~~ 229 (794)
.+..+....|+|+|.+||||++++++.|+++||++++||+|.|++|||+||.||+.++. +.+.++.+
T Consensus 24 ~~v~~YvcGPtvy~~~HIGHaR~~v~~Dvl~R~lr~~Gy~V~~v~n~dD~ddKIi~~A~-------~~g~~~~e------ 90 (462)
T 3tqo_A 24 GKVKLYVCGMTVYDYMHIGHGRSWIIFDMVVRYLRMRGYEVTFVRNITDIDDKIIKRAG-------ENKESPAA------ 90 (462)
T ss_dssp TEEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEECBBCCCHHHHHHHH-------HTTSCHHH------
T ss_pred CeEEEEeCCCcCCCCCchhhhHHHHHHHHHHHHHHHcCCceEEecCcCCCCcHHHHHHH-------HcCCCHHH------
Confidence 34455556889999999999999999999999999999999999999999999999887 34566655
Q ss_pred HHHHHHHHHHHHHHHHcCCccCCCCccccCChHHHHHHHHHHHHHHHcCCeeec-ccCceeccCCC
Q 003799 230 KFAKATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRG-KKPVHWSPSSR 294 (794)
Q Consensus 230 ~~a~~~~~~~~~~~~~lGi~~dwd~~~~T~d~~~~~~v~~~f~~L~~kGlIy~~-~~~v~w~~~~~ 294 (794)
+++++++.+++++++|||+.++..+..| .|...++++|.+|+++|++|++ .+.|+||+++.
T Consensus 91 -~a~~~~~~f~~d~~~LgI~~d~~~praT---e~i~~i~~~i~~L~ekG~aY~~~~g~Vyfdv~~~ 152 (462)
T 3tqo_A 91 -LAERFIQILHEDEKALRVLSPDQEPRAT---QYVPEIIKLIQKLLDNQYAYTGQNGDVFFDVRRF 152 (462)
T ss_dssp -HHHHHHHHHHHHHHHHTCCCCSBCCBGG---GCHHHHHHHHHHHHHHTSEEECTTSCEEECTTTC
T ss_pred -HHHHHHHHHHHHHHHcCCCCCccccChh---hHHHHHHHHHHHHHHCCCEEEecCCcEEeccccc
Confidence 4999999999999999998887776665 8999999999999999999999 78999999875
No 22
>2wfd_A Leucyl-tRNA synthetase, cytoplasmic; aminoacyl-tRNA synthetase, phosphoprotein, editing domain, nucleotide-binding, hydrolysis of MIS-charged trnas; 3.25A {Homo sapiens}
Probab=99.97 E-value=2e-31 Score=278.89 Aligned_cols=179 Identities=19% Similarity=0.259 Sum_probs=143.6
Q ss_pred cceeEEeccCCCCcccccccccCCccceeccCCCCccccccEEEECCCcceeeeeecccccCCCCCcCCCCCCCCCcccC
Q 003799 313 IYAVFRMVSAPPSTSGLLNEFLPDLGLAVWTTTPWTVPANAAVAVNAKLQYAVVEIQSLLEGDSAAPANKKSRPGNVLKD 392 (794)
Q Consensus 313 ~~v~F~l~~~~~~~~~~l~~~~~~~~l~iwTT~PwTi~~n~av~v~p~~~Y~~v~~~~~~~~~s~~~~~~~~~~g~~~~~ 392 (794)
.-++|++.+......+.+. .++.+++||||||||||||+|+||||++.|++++..
T Consensus 8 ~~ikf~v~~~~~~~~~~~~--~~~~~l~v~TTrP~TL~g~talav~Pe~~yv~~~~~----------------------- 62 (252)
T 2wfd_A 8 TLLKLKVLEPYPSKLSGLK--GKNIFLVAATLRPETMFGQTNCWVRPDMKYIGFETV----------------------- 62 (252)
T ss_dssp EEEEEEEESSCCGGGGGGT--TSCEEEEEEESCGGGGGGCCEEEECSSSCCEEEECT-----------------------
T ss_pred EEEEEEccCcchhhhhhcc--CCCCEEEEEECChHHHhhhheEEECCCCcEEEEEec-----------------------
Confidence 3468887654332222222 245799999999999999999999999999988752
Q ss_pred CcceEeeecccchHHHHHhcC-----CceEEEeeeccCcccCCeeecCCCC-CcccEEeccCcccccCCCCceeecCCCC
Q 003799 393 QKKVFIIVASDLVPTLEAKWG-----TKLVIKKTLAGSDLENCRYVHPVDN-RQCPVVIGGDYITTESGTGLVHTAPGHG 466 (794)
Q Consensus 393 ~~~~~~iv~~~~~~~~~~~~~-----~~~~~~~~~~G~~L~g~~~~~Pl~~-~~~pvvi~~~~V~~~~GTG~Vh~aPaHg 466 (794)
+++.+|+++++++.+..+ + .+.+++.+++|.+|.|+++.||+++ +.+||| .++||++++|||+||+|||||
T Consensus 63 -~~~~~i~a~~~~~~~~~~-~~~~~~~~~~~~~~~~G~~l~G~~~~~Pl~~~~~ipV~-~adyV~~~~GTG~V~~vPaHd 139 (252)
T 2wfd_A 63 -NGDIFICTQKAARNMSYQ-GFTKDNGVVPVVKELMGEEILGASLSAPLTSYKVIYVL-PMLTIKEDKGTGVVTSVPSDS 139 (252)
T ss_dssp -TSCEEEECHHHHHHHHTT-TSSSSTTCCCEEEECCHHHHTTCEEECSSCSSSCEEEE-ECSCCCSSSSCSSEEECTTTC
T ss_pred -CCcEEEEhhhhHHHHHHH-HhhccCcccEEEEEEEcccccCCEEEcCCCCCceeEEE-EeCcccCCCCCCeEEEcCCCC
Confidence 136789998888775433 2 2467889999999999999999998 579995 699999999999999999999
Q ss_pred hhhHH----------HHHHhCCC--------ccccCCC---------------------------------------CCc
Q 003799 467 QEDYV----------TSLKYGLP--------ILSPVDD---------------------------------------EGK 489 (794)
Q Consensus 467 ~~D~~----------~~~~~gl~--------i~~~vd~---------------------------------------~G~ 489 (794)
++||. ++++|||| ++.+|+. +|+
T Consensus 140 ~~D~~~~~~l~~~~~fa~kygL~~~~~~~~~~~~vI~~~~~g~~~~~~~~~~~~i~~~~d~~~l~~~~~~~y~~~~~~G~ 219 (252)
T 2wfd_A 140 PDDIAALRDLKKKQALRAKYGIRDDMVLPFEPVPVIEIPGFGNLSAVTICDELKIQSQNDREKLAEAKEKIYLKGFYEGI 219 (252)
T ss_dssp HHHHHHHHHHHHCSHHHHTTTCCGGGTTTCCCCCCEEBTTTBSSHHHHHHHHTTCCSTTCHHHHHHHHHHHHHHHHHHCE
T ss_pred HHHHHHHhhhccchhHHHHcCCCchhccccCceeEEecCcccccchhhhhhhccccCcchhhhhhhhhhhhccccccCce
Confidence 99999 57889998 3444321 477
Q ss_pred cccccCCCCCccccccchHHHHHHHHhcCCccc
Q 003799 490 FTEEAGKFSGLDVLGDGNVAVVKYLDEQMSLIM 522 (794)
Q Consensus 490 ~~~~~~~~~G~~v~~ea~~~ii~~L~~~g~l~~ 522 (794)
|+ +++|.|+++. +|++.|++.|+++|.+..
T Consensus 220 ~~--~~~~~Gl~v~-eA~~~Ii~~L~~~g~~~~ 249 (252)
T 2wfd_A 220 ML--VDGFKGQKVQ-DVKKTIQKKMIDAGDALI 249 (252)
T ss_dssp EC--STTSTTCBHH-HHHHHHHHHHHHTTSEEE
T ss_pred Ee--eeccCCeEHH-HHHHHHHHHHHHCCCCcc
Confidence 76 6889999995 999999999999997653
No 23
>3pz6_A Leurs, leucyl-tRNA synthetase; editing domain, glleurs_CP1, ligase; 2.60A {Giardia intestinalis}
Probab=99.96 E-value=1.5e-30 Score=272.06 Aligned_cols=158 Identities=23% Similarity=0.278 Sum_probs=133.8
Q ss_pred CccceeccCCCCccccccEEEECCCcceeeeeecccccCCCCCcCCCCCCCCCcccCCcceEeeecccchHHHHHhcC--
Q 003799 336 DLGLAVWTTTPWTVPANAAVAVNAKLQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFIIVASDLVPTLEAKWG-- 413 (794)
Q Consensus 336 ~~~l~iwTT~PwTi~~n~av~v~p~~~Y~~v~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~iv~~~~~~~~~~~~~-- 413 (794)
+.+++||||||||||||+||||||+++|+++++.. ++.||+++++++++..+..
T Consensus 79 ~v~lvIWTTTPWTLPgNtAiaVnPd~~Yv~v~~~~------------------------ge~~IvAe~l~e~l~~q~~~~ 134 (311)
T 3pz6_A 79 KVYLLAATLRPETMVGQTNCWVLPTGRYGAYYINK------------------------DEVIIVSEHAAVNMAHQGLNN 134 (311)
T ss_dssp EEEEEEEESCGGGGGGCCEEEECTTCEEEEEEEET------------------------TEEEEEEHHHHHHHHTTTCSS
T ss_pred CEEEEEEECCchhhhhheEEEECCCCcEEEEEECC------------------------CCEEEEeHHHHHHHHHhcccc
Confidence 47899999999999999999999999999998742 5789999999999765422
Q ss_pred ----CceEEEeeeccCcccCCeeecCCCCC-cccEEeccCcccccCCCCceeecCCCChhhHHHHHH-----------hC
Q 003799 414 ----TKLVIKKTLAGSDLENCRYVHPVDNR-QCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLK-----------YG 477 (794)
Q Consensus 414 ----~~~~~~~~~~G~~L~g~~~~~Pl~~~-~~pvvi~~~~V~~~~GTG~Vh~aPaHg~~D~~~~~~-----------~g 477 (794)
..++++.+++|++|+|++|.||++++ .+|| ++++||++++|||+||+|||||++||.+|++ ||
T Consensus 135 ~~~~~~~~vl~~~kG~eL~G~~~~hPl~~~~~ipI-l~ad~Vt~d~GTGiVh~aPaHg~dDy~~~~d~Lk~k~~~~~Kyg 213 (311)
T 3pz6_A 135 NKPFGELDFISEISGSDLLLATVRAPLSPYEQIFV-LPLETIKMDKGTGIVTSVPSDAPDDYACYKDILENRNGIAEKYG 213 (311)
T ss_dssp SCCTTCCCEEEEEEHHHHTTCEEECTTCSSSCEEE-EECTTCCTTSTTSEEEECTTTCHHHHHHHHHHHTTGGGHHHHTT
T ss_pred cccCCCcEEEEEEEhHHhcCCEEECCCCCCCeeEE-EecCcCccCCCcceEEeCCCCCHHHHHHHHHHhhccHHHHHHcC
Confidence 25789999999999999999999996 8898 6799999999999999999999999996666 77
Q ss_pred C---------CccccCCC---------------------------------------CCccccccCCCCCccccccchHH
Q 003799 478 L---------PILSPVDD---------------------------------------EGKFTEEAGKFSGLDVLGDGNVA 509 (794)
Q Consensus 478 l---------~i~~~vd~---------------------------------------~G~~~~~~~~~~G~~v~~ea~~~ 509 (794)
| +++.+|+. +|.|. .|+|.|+.|. +|+++
T Consensus 214 i~~e~v~~~~e~ipvI~~~g~G~~~A~~~ve~~~I~sq~D~~kLeeA~~~~Y~~ef~~Gvm~--~g~~~G~~V~-eAk~~ 290 (311)
T 3pz6_A 214 VDVGLMLEPYSPLPIIEIPDIGTLSAVRLCEESNVSSLHDRAKLTQIKEICYTKGFYTGIMK--MGPFAGQSVK-DCKQS 290 (311)
T ss_dssp CCHHHHTTTSCCCCCEEBTTTBSSHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHCEEC--SSTTTTSBHH-HHHHH
T ss_pred CchHHhccCCCeEEEEecCCCCCccHHHHHHHhCCCCcchHHHHHHHHHHHHhccCCCCEEe--eeccCCeEHH-HHHHH
Confidence 5 55555431 13333 4789999995 99999
Q ss_pred HHHHHHhcCCcc
Q 003799 510 VVKYLDEQMSLI 521 (794)
Q Consensus 510 ii~~L~~~g~l~ 521 (794)
|.+.|.+.|..+
T Consensus 291 i~~~L~~~g~a~ 302 (311)
T 3pz6_A 291 CRDLLVQNNQCI 302 (311)
T ss_dssp HHHHHHHTTCEE
T ss_pred HHHHHHHCCCce
Confidence 999999998654
No 24
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Probab=99.96 E-value=3.7e-30 Score=290.73 Aligned_cols=123 Identities=16% Similarity=0.146 Sum_probs=95.9
Q ss_pred EEcCCCCCCCcccchHHHhHHHHHHHHHHHHhCCCeeEEecc---------c-cCCCchHHHHHHhhchhhhhcCCCHHH
Q 003799 154 LHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPG---------W-DCHGLPIELKVLQSLDEDAKKDLTPSK 223 (794)
Q Consensus 154 i~~~pPy~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G---------~-D~hGlpie~~~~k~~~~~~~~~~~~~~ 223 (794)
+...+|+|+|.+|||||+++++.|+++||++++||+|.|++| + ||||.||+.++. +.+.+|.+
T Consensus 45 ~YvcgPTvYg~~HIGHar~~v~~Dvl~R~lr~~Gy~V~~v~niTDvGhltG~~DehddKI~~~A~-------~~g~~~~e 117 (501)
T 3sp1_A 45 VYACGPTVYNYAHIGNFRTYIFGDLLIKTLRFLGYKVNYAMNITDIGHLTGDLDDGEDKVAKTAR-------EKGLTVYE 117 (501)
T ss_dssp EEECCCBCSSCCCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEBCSCCC--------------------------CCHHH
T ss_pred EEeCCCcCCCCcchhhhHHHHHHHHHHHHHHHcCCceeEEeeecccccccCCCCCCCcHHHHHHH-------HcCCCHHH
Confidence 334568888999999999999999999999999999999965 4 888999999887 45667755
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCccCCCCccccCChHHHHHHHHHHHHHHHcCCeeecccCceeccCC
Q 003799 224 LRAKAAKFAKATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSS 293 (794)
Q Consensus 224 ~~~~~~~~a~~~~~~~~~~~~~lGi~~dwd~~~~T~d~~~~~~v~~~f~~L~~kGlIy~~~~~v~w~~~~ 293 (794)
+ |+++++.+++++++|||+.||. .++++.|...++++|.+|+++|+||++.+.||||+++
T Consensus 118 ~-------a~~~~~~f~~d~~~Lgi~~d~~---~~~~t~hi~~v~~~i~~L~~kG~aY~~~g~Vyf~v~~ 177 (501)
T 3sp1_A 118 I-------SEFFTEAFFNDCRKLNIVYPDK---VLVASKHIPIMIEVVKILEEKKITYFSNGNVYFDTSC 177 (501)
T ss_dssp H-------HHHHHHHHHHHHHHTTCCCCSE---EEEGGGCHHHHHHHHHHHHHTTCEEEETTEEEECGGG
T ss_pred H-------HHHHHHHHHHHHHHcCCCCCCc---ccCcchHHHHHHHHHHHHHHCCCEEEeCCcEEecCCc
Confidence 5 9999999999999999977763 3457899999999999999999999999999999987
No 25
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}
Probab=99.96 E-value=4.4e-29 Score=280.35 Aligned_cols=119 Identities=16% Similarity=0.125 Sum_probs=103.5
Q ss_pred CCCCCCCcccchHHHhHHHHHHHHHHHHhCCCeeEEeccccCCCchHHHHHHhhchhhhhcCCCHHHHHHHHHHHHHHHH
Q 003799 157 GPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKAAKFAKATV 236 (794)
Q Consensus 157 ~pPy~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G~D~hGlpie~~~~k~~~~~~~~~~~~~~~~~~~~~~a~~~~ 236 (794)
..|+|||.+||||+++++++|+++||++++||+|.+++|||+||.+|+.++.+ .+.++.++ |++++
T Consensus 45 ~gPt~yg~~HiGHar~~v~~DvlaR~lr~~G~~V~~~~~~dd~g~ki~~~A~~-------~g~~~~~~-------~~~~~ 110 (414)
T 3c8z_A 45 CGITPYDATHLGHAATYLTFDLVHRLWLDAGHTVQYVQNVTDVDDPLFERAER-------DGIDWRTL-------GDRET 110 (414)
T ss_dssp CCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCSCHHHHHHHHH-------HTCCHHHH-------HHHHH
T ss_pred CCCcCCCCcCccccHHHHHHHHHHHHHHHcCCCEEeCCCCCCccHHHHHHHHH-------cCCCHHHH-------HHHHH
Confidence 36888999999999999999999999999999999999999999999999873 35666554 89999
Q ss_pred HHHHHHHHHcCCccCCCCccccCChHHHHHHHHHHHHHHHcCCeeecc----cCceeccC
Q 003799 237 KAQMASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGK----KPVHWSPS 292 (794)
Q Consensus 237 ~~~~~~~~~lGi~~dwd~~~~T~d~~~~~~v~~~f~~L~~kGlIy~~~----~~v~w~~~ 292 (794)
+.+++++++|||.. +|.+.+|++ |...++++|.+|+++|+||++. ..++++.+
T Consensus 111 ~~~~~~~~~Lgi~~-~d~~~r~t~--~~~~~~~~~~~L~~kG~~Y~~~~~~e~~~~f~~~ 167 (414)
T 3c8z_A 111 QLFREDMAALRVLP-PHDYVAATD--AIAEVVEMVEKLLASGAAYIVEDAEYPDVYFRAD 167 (414)
T ss_dssp HHHHHHHHHTTCCC-CSEEEEGGG--CHHHHHHHHHHHHHHTSEEECSCSSCCCEEECTT
T ss_pred HHHHHHHHHcCCCC-Ccceecccc--hHHHHHHHHHHHHHCCCEEeccCCcCCCEEEEch
Confidence 99999999999941 566777765 8899999999999999999988 55666554
No 26
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B
Probab=99.95 E-value=2.3e-27 Score=269.29 Aligned_cols=125 Identities=15% Similarity=0.146 Sum_probs=107.6
Q ss_pred CcEEEEcCCCCCCCcccchHHHhHHHHHHHHHHHHhCCCeeEEeccccCCCchHHHHHHhhchhhhhcCCCHHHHHHHHH
Q 003799 150 ENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKAA 229 (794)
Q Consensus 150 ~~f~i~~~pPy~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G~D~hGlpie~~~~k~~~~~~~~~~~~~~~~~~~~ 229 (794)
.+++++ .|+|+|.+||||++++++.|+++||+++.||+|.|+.|+|++|.+|..++. +.+.++.++
T Consensus 23 v~~yv~--gPt~y~~~HiGHar~~v~~D~l~R~lr~~G~~V~~v~~~tD~d~ki~~~A~-------~~g~~~~~~----- 88 (461)
T 1li5_A 23 VGMYVC--GITVYDLCHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDKIIKRAN-------ENGESFVAM----- 88 (461)
T ss_dssp EEEEEC--CCBSSSCCBHHHHHHHHHHHHHHHHHHHHTCEEEEEECBBCCSHHHHHHHH-------HTTCCHHHH-----
T ss_pred eeEEEc--CCcCCCCCcccccHHHHHHHHHHHHHHHcCCCEEEeecCCCCcHHHHHHHH-------HcCCCHHHH-----
Confidence 445555 456669999999999999999999999999999999999999999988876 446677665
Q ss_pred HHHHHHHHHHHHHHHHcCCccCC-CCccccCChHHHHHHHHHHHHHHHcCCeeec-ccCceeccCCC
Q 003799 230 KFAKATVKAQMASFKRYGVWADW-NNPYLTLDPEYEAAQIEVFGQMSLQGYIYRG-KKPVHWSPSSR 294 (794)
Q Consensus 230 ~~a~~~~~~~~~~~~~lGi~~dw-d~~~~T~d~~~~~~v~~~f~~L~~kGlIy~~-~~~v~w~~~~~ 294 (794)
|+++++.+++++++||| .+ +.+.+|++ |...+++++.+|.++|++|.+ ...|+||+++.
T Consensus 89 --~~~~~~~f~~~~~~LgI--~~~d~~~r~t~--~~~~~~~~i~~L~~~G~aY~~~~g~v~f~~~~~ 149 (461)
T 1li5_A 89 --VDRMIAEMHKDFDALNI--LRPDMEPRATH--HIAEIIELTEQLIAKGHAYVADNGDVMFDVPTD 149 (461)
T ss_dssp --HHHHHHHHHHHHHHTTC--CCCSBCCBGGG--CHHHHHHHHHHHHHTTSEEECTTSCEEECGGGC
T ss_pred --HHHHHHHHHHHHHHcCC--CCCcccccccc--hHHHHHHHHHHHHHCCCEEEecCCCEEEecccc
Confidence 89999999999999999 54 44556654 899999999999999999999 89999998763
No 27
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Probab=99.84 E-value=3.7e-21 Score=225.04 Aligned_cols=147 Identities=15% Similarity=0.118 Sum_probs=106.9
Q ss_pred cEEEEcCCCCCCCcccchHHHhHHHHHHHHHHHHhCCCeeEEeccccCCCchHHHHHH--hhchhhhhcCCCHH------
Q 003799 151 NFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVL--QSLDEDAKKDLTPS------ 222 (794)
Q Consensus 151 ~f~i~~~pPy~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G~D~hGlpie~~~~--k~~~~~~~~~~~~~------ 222 (794)
+.+|.-.=|||||++||||+|+.+++|+++|++++.||+|.++..+++.|..+..-+. ++.+.....+..+.
T Consensus 104 ~v~ve~~spn~~~~~HiGH~R~~iigD~laR~l~~~G~~V~~~~~i~D~G~q~~~li~~~~~~g~d~~~~~~~d~~~g~~ 183 (592)
T 1iq0_A 104 VVLVEHTSVNPNKELHVGHLRNIALGDAIARILAYAGREVLVLNYIDDTGRQAAETLFALRHYGLTWDGKEKYDHFAGRA 183 (592)
T ss_dssp EEEEECCCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTEEEEEEEEECTTSHHHHHHHHHHHHTTCCCCSSSCHHHHHHHH
T ss_pred eEEEEeeCCCCCCCCcchHHHHHHHHHHHHHHHHHcCCceEEEeccCCcchHHHHHHHHHHHhCCcccCCCCcchhHHHH
Confidence 4577778999999999999999999999999999999999998777777765532211 00110000000000
Q ss_pred -----------HHHHH------------HHHHHHHHHHHHHHHHHHcCCccCCCCccccCChHHHHHHHHHHHHHHHcCC
Q 003799 223 -----------KLRAK------------AAKFAKATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGY 279 (794)
Q Consensus 223 -----------~~~~~------------~~~~a~~~~~~~~~~~~~lGi~~dwd~~~~T~d~~~~~~v~~~f~~L~~kGl 279 (794)
++.++ ++++++.+++.+++++++||| +||.+.+|++..+...+++++.+|.++|+
T Consensus 184 y~~~~~~~~~~~~~~~a~~~~~~~e~g~~~~~~~~~~~~~~~~~~~LgI--~~D~~~~es~~~~~~~v~~~~~~L~~kG~ 261 (592)
T 1iq0_A 184 YVRLHQDPEYERLQPAIEEVLHALERGELREEVNRILLAQMATMHALNA--RYDLLVWESDIVRAGLLQKALALLEQSPH 261 (592)
T ss_dssp HHHHHHCTTTGGGHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHTTC--CCSEEEEHHHHHHTTHHHHHHHHHTTSTT
T ss_pred HHHHHHHHHhhhHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHcCC--EeEEeccCCcccccchHHHHHHHHHHCCC
Confidence 00000 167789999999999999999 78888888877779999999999999999
Q ss_pred eee---cccCceeccCCCccccc
Q 003799 280 IYR---GKKPVHWSPSSRTALAE 299 (794)
Q Consensus 280 Iy~---~~~~v~w~~~~~t~Lae 299 (794)
+|+ +.....||..+..+-.+
T Consensus 262 ~y~~~~g~~~G~~~~~~~~~g~~ 284 (592)
T 1iq0_A 262 VFRPREGKYAGALVMDASPVIPG 284 (592)
T ss_dssp EECCSSSTTTTCEEEECTTTSCS
T ss_pred cccCcccCcCCCEEEechhcCCC
Confidence 994 35556666666554333
No 28
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A
Probab=99.80 E-value=2.9e-19 Score=209.74 Aligned_cols=149 Identities=23% Similarity=0.269 Sum_probs=114.1
Q ss_pred CCcEEEEcCCCCCCCcccchHHHhHHHHHHHHHHHHhCCCeeEEeccccCCCchHHHHHH--hhchhhhhc---------
Q 003799 149 GENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVL--QSLDEDAKK--------- 217 (794)
Q Consensus 149 ~~~f~i~~~pPy~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G~D~hGlpie~~~~--k~~~~~~~~--------- 217 (794)
+++..+.-.=|||||++||||+|+.+++|+++|+++..||+|.+....+++|.++..-+. +.++.....
T Consensus 118 ~~~V~ve~~spN~~~~~HiGH~Rs~iigD~laR~l~~~G~~V~~~~~i~D~G~Q~~~l~~~~~~~g~~~~~~~~~~~~~~ 197 (629)
T 2zue_A 118 GKKVIVEHTSVNPTKPLHMGHARNAILGDVMARILRFLGYEVEVQNYIDDLGIQFAQVYWGYLRLKEEFERIMNELRERG 197 (629)
T ss_dssp TCEEEEECCCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECTTSHHHHHHHHHHHHCHHHHHHHHHHHHHHT
T ss_pred CCEEEEEeeCCCCCCCCccchhHHHHHHHHHHHHHHHcCCCceEEecccchhHHHHHHHHHHHHhCCcchhhhhhhcccc
Confidence 456667778999999999999999999999999999999999999999999988764332 111111000
Q ss_pred -CCCHH-----HHHHH--------------H--------------HHHHHHHHHHHHHHHHHcCCccCCCCccccCChHH
Q 003799 218 -DLTPS-----KLRAK--------------A--------------AKFAKATVKAQMASFKRYGVWADWNNPYLTLDPEY 263 (794)
Q Consensus 218 -~~~~~-----~~~~~--------------~--------------~~~a~~~~~~~~~~~~~lGi~~dwd~~~~T~d~~~ 263 (794)
.-+|. ++..+ + +.+++.+++.+++++++||| .+|.+..|++..+
T Consensus 198 ~~~~~~d~~~g~~y~~~a~~~~~~~~~~~~~~~~~~~~e~gd~~~~~~~~~~~~~f~~~~~~L~I--~~D~~~~es~~~~ 275 (629)
T 2zue_A 198 LKDNPIDHALGLLYVEVNRRLEDNPELENEIRDIMKKLESGELYGRKLAEEVVRAQMVTTYKLGV--KYDLLVWESDIVR 275 (629)
T ss_dssp SCSCCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHHTC--CCSEEEEHHHHHH
T ss_pred cccCcchhhHHHHHHHHHHHHhcCchHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHcCC--ccccccCcCcccc
Confidence 00000 00000 0 56788899999999999999 7788889987777
Q ss_pred HHHHHHHHHHHHHcCCee---ecccCceeccCCCccccc
Q 003799 264 EAAQIEVFGQMSLQGYIY---RGKKPVHWSPSSRTALAE 299 (794)
Q Consensus 264 ~~~v~~~f~~L~~kGlIy---~~~~~v~w~~~~~t~Lae 299 (794)
...+.+++.+|.++|++| +|+....||..+..+-.+
T Consensus 276 ~~~v~~vi~~L~~kG~~y~~~~ge~~Ga~~v~~~~~g~~ 314 (629)
T 2zue_A 276 RKLFEIALELLSKNENFYIPSDGKYRGAFVMDLRKLFPD 314 (629)
T ss_dssp TTHHHHHHHHHHTSTTEECCSSSTTTTCEEEECTTTCSS
T ss_pred chhHHHHHHHHHHCCCccccccCCcCCcEEEECcccCCc
Confidence 999999999999999999 467778888887776433
No 29
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=99.80 E-value=8.2e-19 Score=198.32 Aligned_cols=124 Identities=14% Similarity=0.128 Sum_probs=92.0
Q ss_pred HHHhhhcCeeecCCCCCCCCCCchhhhhhhhcCCCCceecChHHHHHHH---------HHHHHHHhHHHHHHhcccCCCC
Q 003799 558 AAMDAIGQVKWVPPQEAPGYGADVLRLWVSSVDYTGDVMIGPQVLRQMS---------DIYRKLRGTLRYLLGNLHDWRV 628 (794)
Q Consensus 558 ~~l~~i~~v~~~P~~~~~~yGaD~lRl~las~~~~~Di~~s~~~l~~~~---------~~~~kl~Nt~rfll~nl~~~~~ 628 (794)
+|+++.+++.+ |.++++++|+|++|||+++..+.+|++|+.+.+.... -.+.|+.+++|.. +..++.+
T Consensus 285 KMSKr~Gn~v~-l~dll~~~g~dalRy~~l~~~~~~d~~Fd~~~~~~~~n~npv~YlqYa~aRi~silrk~--~~~~~~~ 361 (464)
T 3fnr_A 285 KMSKRAGNFIL-MSDVVDEIGSDALRYIFLSKKCDTHLEFDISDLQKEDSSNPVYYINYAHARIHQVFAKA--GKKIDDV 361 (464)
T ss_dssp CC---CCSSCB-HHHHHHHHCHHHHHHHTTSSCTTSCEEEEGGGGGCCSTTSHHHHHHHHHHHHHHHHHHT--TCCTTTS
T ss_pred CCcCcCCCCCC-HHHHHhhccHHHHHHHHHhcCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHh--hccCCCc
Confidence 67777777765 5556778999999999999999999999988775422 2456788877763 2222222
Q ss_pred CCCcCCCCCChhhHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhHHHHHh
Q 003799 629 GNSISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDV 686 (794)
Q Consensus 629 ~~~~~~~~l~~~D~~il~~l~~lv~~v~~~~e~y~f~~ai~~l~~f~~~~lsn~Yle~ 686 (794)
. ..+...+.+.|++++.+|.++.+.+.+++++|+++.+++.+++++. .++++|-+.
T Consensus 362 ~-~~~~~~L~~~e~~Ll~~L~~~~~~v~~a~~~~ep~~i~~yL~~La~-~~n~fY~~~ 417 (464)
T 3fnr_A 362 M-KADLQSLNQDGVNLLFEALNLKAVLNDAFEARALQKIPDYLKNLAA-NFHKFYNEN 417 (464)
T ss_dssp T-TCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHTCTTHHHHHHHHHHH-HHHHHHHHC
T ss_pred c-ccChhhCChHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHHHHHhC
Confidence 1 1223456666999999999999999999999999999999999985 587777653
No 30
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1
Probab=99.68 E-value=1.2e-17 Score=192.95 Aligned_cols=124 Identities=15% Similarity=0.160 Sum_probs=92.9
Q ss_pred CcEEEEcCCCCCCCcccchHHHhHHHHHHHHHHHHhCCCeeEEeccccCCC--chH---HHHHHh-hchhhhhcCCCHHH
Q 003799 150 ENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHG--LPI---ELKVLQ-SLDEDAKKDLTPSK 223 (794)
Q Consensus 150 ~~f~i~~~pPy~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G~D~hG--lpi---e~~~~k-~~~~~~~~~~~~~~ 223 (794)
+.|++.+ .|+|||.+||||+++.++.|+++||++++|++|.|+.|+|+|| .+| ...+.+ .++....+--+|.
T Consensus 20 ~~yv~~t-gPsPtG~lHIGhaR~al~~D~laR~l~~~g~~v~fi~~idD~d~~rkip~~~~~a~~~~~G~~~~~~p~p~- 97 (523)
T 1irx_A 20 EKYVVES-GITPSGYVHVGNFRELFTAYIVGHALRDKGYEVRHIHMWDDYDRFRKVPRNVPQEWKDYLGMPISEVPDPW- 97 (523)
T ss_dssp SEEEEEE-EECCSSCCCHHHHHHHHHHHHHHHHHHTTTCEEEEEEEECTTSBCCCCCSSSCGGGGGGTTSBGGGSCCTT-
T ss_pred CeEEECC-CCCCCCCcccCCcHHHHHHHHHHHHHHHcCCCEEEEEeeCCcchhhhhhhHHHHHHHHHcCCCcccCCcch-
Confidence 4576655 6899999999999999999999999999999999999999999 433 111111 1111100001121
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCccCCCCccccCChHHHH-HHHHHHHHHHHcC-Cee
Q 003799 224 LRAKAAKFAKATVKAQMASFKRYGVWADWNNPYLTLDPEYEA-AQIEVFGQMSLQG-YIY 281 (794)
Q Consensus 224 ~~~~~~~~a~~~~~~~~~~~~~lGi~~dwd~~~~T~d~~~~~-~v~~~f~~L~~kG-lIy 281 (794)
..|+++|+++.+.++++|++||| +||.. ++++. |.. .+++++.+|.++| .||
T Consensus 98 --~~~~~~~~~~~~~~~~~l~~Lgi--~~D~~-~~se~-~~~g~~~~~i~~L~~~G~~iy 151 (523)
T 1irx_A 98 --GCHESYAEHFMRKFEEEVEKLGI--EVDLL-YASEL-YKRGEYSEEIRLAFEKRDKIM 151 (523)
T ss_dssp --SSSSSHHHHHHHHHHHHHHTTTC--CCEEE-EHHHH-HHTTTTHHHHHHHHHTHHHHH
T ss_pred --hhHHHHHHHHHHHHHHHHHHcCC--CceEE-echhh-ccchHHHHHHHHHHHchHHHH
Confidence 23677899999999999999999 77765 55443 777 8999999999999 555
No 31
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Probab=99.21 E-value=5.1e-11 Score=139.03 Aligned_cols=138 Identities=11% Similarity=0.144 Sum_probs=102.6
Q ss_pred CCcEEEEcCCCCCCCcccchHHHhHHHHHHHHHHHHhCCCeeEEeccccCCCchHHHHHHh--hch--------------
Q 003799 149 GENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQ--SLD-------------- 212 (794)
Q Consensus 149 ~~~f~i~~~pPy~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G~D~hGlpie~~~~k--~~~-------------- 212 (794)
+++.++.--=|||||++||||+|+.+++|+++|+++..||+|.++...+++|.++..-+.- ..+
T Consensus 142 ~~~V~ve~~spN~~~plHvGHlRs~iiGD~laRil~~~G~~V~~~~~i~D~G~Q~~~l~~~~~~~g~~~~~~~~~i~~l~ 221 (607)
T 1f7u_A 142 NKKVIIEFSSPNIAKPFHAGHLRSTIIGGFLANLYEKLGWEVIRMNYLGDWGKQFGLLAVGFERYGNEEALVKDPIHHLF 221 (607)
T ss_dssp CCEEEEECCCCBTTSCCBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHHHHCCHHHHHHCHHHHHH
T ss_pred CCeEEEEecCCCCCCCCccchHHHHHHHHHHHHHHHHcCCCeeEEEeecCcchHHHHHHHHHHHhCchhhccCCChHHHH
Confidence 4566777789999999999999999999999999999999999999999999887543210 000
Q ss_pred ------------------------hhhhc------CCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCCccccCChH
Q 003799 213 ------------------------EDAKK------DLTPSKLRAKAAKFAKATVKAQMASFKRYGVWADWNNPYLTLDPE 262 (794)
Q Consensus 213 ------------------------~~~~~------~~~~~~~~~~~~~~a~~~~~~~~~~~~~lGi~~dwd~~~~T~d~~ 262 (794)
...++ +-++ +..+.-+.+++.+++.+++++++||| .+|.+..+++ .
T Consensus 222 ~~Y~~~~~~~~~~~e~g~~~~~i~~~A~~~~~~le~gd~-e~~~~w~~~~~~~~~~~~~~~~~L~V--~fD~~~~ES~-~ 297 (607)
T 1f7u_A 222 DVYVRINKDIEEEGDSIPLEQSTNGKAREYFKRMEDGDE-EALKIWKRFREFSIEKYIDTYARLNI--KYDVYSGESQ-V 297 (607)
T ss_dssp HHHHHHHHHHHHSTTSSCHHHHSSHHHHHHHHHHHHTCH-HHHHHHHHHHHHHHHHHHHHHHHTTC--CCSEEEEGGG-C
T ss_pred HHHHHHHHHhhhccccccccHHHHHHHHHHHHHhhCCCH-HHHHHHHHHHHHHHHHHHHHHHHcCC--cceeecCcch-h
Confidence 00000 0111 22223456788888999999999999 6676666543 2
Q ss_pred HHHHHHHHHHHHHHcCCeeecccCceec
Q 003799 263 YEAAQIEVFGQMSLQGYIYRGKKPVHWS 290 (794)
Q Consensus 263 ~~~~v~~~f~~L~~kGlIy~~~~~v~w~ 290 (794)
+...+.+++.+|.++|++|+....++..
T Consensus 298 ~~~~~~~vi~~L~~kG~~ye~dGa~~~~ 325 (607)
T 1f7u_A 298 SKESMLKAIDLFKEKGLTHEDKGAVLID 325 (607)
T ss_dssp CHHHHHHHHHHHHHTTCEEEETTEEEEE
T ss_pred hhhHHHHHHHHHHhCCCEEEECCcEEEE
Confidence 3368899999999999999977666543
No 32
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*
Probab=98.27 E-value=7.2e-07 Score=95.13 Aligned_cols=89 Identities=18% Similarity=0.360 Sum_probs=65.6
Q ss_pred CCCCCCcccchHHHhHHHHHHHHHHHHhCCCeeEEeccccCCCchHHHHHHhhchhhhhcCCCHHHHHHHHHHHHHHHHH
Q 003799 158 PPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKAAKFAKATVK 237 (794)
Q Consensus 158 pPy~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G~D~hGlpie~~~~k~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 237 (794)
+|.|||.|||||+++.++. |...+++.+.|+.-+|+...+ +. ..++.+
T Consensus 11 APsPtG~LHiG~~rtal~n-----~l~Ar~~~g~~ilRieDtD~~-------------R~--------------~~~~~~ 58 (298)
T 1nzj_A 11 APSPSGELHFGSLIAALGS-----YLQARARQGRWLVRIEDIDPP-------------RE--------------VPGAAE 58 (298)
T ss_dssp CCCTTSCCCHHHHHHHHHH-----HHHHHHTTCEEEEEECCSCGG-------------GS--------------CTTHHH
T ss_pred CcCCCCCccHHHHHHHHHH-----HHHHHhcCCeEEEEEecCCch-------------hh--------------HHHHHH
Confidence 8999999999999999854 444445556666655553211 10 133567
Q ss_pred HHHHHHHHcCCccCCCC-ccccCChHHHHHHHHHHHHHHHcCCeee
Q 003799 238 AQMASFKRYGVWADWNN-PYLTLDPEYEAAQIEVFGQMSLQGYIYR 282 (794)
Q Consensus 238 ~~~~~~~~lGi~~dwd~-~~~T~d~~~~~~v~~~f~~L~~kGlIy~ 282 (794)
.+.++++.||+ +||. +++.+ ++.....+++.+|.++|++|.
T Consensus 59 ~I~~dL~~LGl--~~D~~~~~qS--er~~~y~~~~~~L~~~G~aY~ 100 (298)
T 1nzj_A 59 TILRQLEHYGL--HWDGDVLWQS--QRHDAYREALAWLHEQGLSYY 100 (298)
T ss_dssp HHHHHHHHTTC--CCSSCCEEGG--GCHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHcCC--CCCCCCeeee--CCHHHHHHHHHHHHHcCCccc
Confidence 78999999999 9997 44443 467888999999999999996
No 33
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=98.21 E-value=1e-06 Score=100.40 Aligned_cols=92 Identities=21% Similarity=0.292 Sum_probs=70.7
Q ss_pred EcCCCCCCCcccchHHHhHHHHHHHHHHHHhCCCeeEEeccccCCCchHHHHHHhhchhhhhcCCCHHHHHHHHHHHHHH
Q 003799 155 HDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKAAKFAKA 234 (794)
Q Consensus 155 ~~~pPy~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G~D~hGlpie~~~~k~~~~~~~~~~~~~~~~~~~~~~a~~ 234 (794)
+-=||.|||.||||||++.++...++| +|.+.|+.-+|+.--+ +. ..+
T Consensus 99 tRFaPsPtG~LHIGhaRtal~n~l~Ar-----~~~G~~iLRieDtD~~-------------R~--------------~~e 146 (553)
T 3aii_A 99 LRFAPNPSGPLHIGHARAAILNHEYAR-----KYDGRLILRIEDTDPR-------------RV--------------DPE 146 (553)
T ss_dssp EEECCCSSSSCBHHHHHHHHHHHHHHH-----HTTCEEEEEECCCCGG-------------GC--------------CTT
T ss_pred EEeCCCCCCCccHHHHHHHHHHHHHHH-----HcCCEEEEEECcCCcc-------------cc--------------cHH
Confidence 444999999999999999998666655 5666677766665311 10 234
Q ss_pred HHHHHHHHHHHcCCccCCCCccccCChHHHHHHHHHHHHHHHcCCeee
Q 003799 235 TVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYR 282 (794)
Q Consensus 235 ~~~~~~~~~~~lGi~~dwd~~~~T~d~~~~~~v~~~f~~L~~kGlIy~ 282 (794)
+.+.+.++++.||+ +||..++.+ +|.....+...+|.++|++|.
T Consensus 147 ~~~~I~edL~wLGl--~wd~~~~qS--dr~~~y~~~~~~Li~~G~AY~ 190 (553)
T 3aii_A 147 AYDMIPADLEWLGV--EWDETVIQS--DRMETYYEYTEKLIERGGAYV 190 (553)
T ss_dssp HHHHHHHHHHHHTC--CCSEEEEGG--GGHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHcCC--CCCCCcccc--cCHHHHHHHHHHHHHcCCcee
Confidence 56778999999999 998765543 788889999999999999996
No 34
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A
Probab=98.19 E-value=2e-06 Score=98.06 Aligned_cols=92 Identities=25% Similarity=0.308 Sum_probs=67.1
Q ss_pred EcCCCCCCCcccchHHHhHHHHHHHHHHHHhCCCeeEEeccccCCCchHHHHHHhhchhhhhcCCCHHHHHHHHHHHHHH
Q 003799 155 HDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKAAKFAKA 234 (794)
Q Consensus 155 ~~~pPy~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G~D~hGlpie~~~~k~~~~~~~~~~~~~~~~~~~~~~a~~ 234 (794)
+-=+|.|||.||||||++.++...++| +|.+.|+.-+|+.- +... ..+
T Consensus 29 tRFaPSPtG~LHIGhaRtal~n~l~Ar-----~~gG~fiLRieDTD--------------------~~R~-------~~e 76 (553)
T 1qtq_A 29 TRFPPEPNGYLHIGHAKSICLNFGIAQ-----DYKGQCNLRFDDTN--------------------PVKE-------DIE 76 (553)
T ss_dssp EEECCCTTSCCBHHHHHHHHHHHHHHH-----HTTCEEEEEECCCC--------------------GGGC-------CHH
T ss_pred EEeCCCCCCCccHHHHHHHHHHHHHHH-----HcCCEEEEEECCCC--------------------chhc-------CHH
Confidence 334899999999999999999777776 34455555555542 1111 345
Q ss_pred HHHHHHHHHHHcCCccCCC-CccccCChHHHHHHHHHHHHHHHcCCeee
Q 003799 235 TVKAQMASFKRYGVWADWN-NPYLTLDPEYEAAQIEVFGQMSLQGYIYR 282 (794)
Q Consensus 235 ~~~~~~~~~~~lGi~~dwd-~~~~T~d~~~~~~v~~~f~~L~~kGlIy~ 282 (794)
+.+.+.++++.||+ +|+ .+++.+ +|.....+...+|.++|++|.
T Consensus 77 ~~~~I~edL~wLGl--~wde~~~~qS--er~~~~~~~a~~Li~~G~AY~ 121 (553)
T 1qtq_A 77 YVESIKNDVEWLGF--HWSGNVRYSS--DYFDQLHAYAIELINKGLAYV 121 (553)
T ss_dssp HHHHHHHHHHHTTC--CCSSSCEEGG--GGHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHcCC--CCCCCCeehc--ccHHHHHHHHHHHHHCCCcee
Confidence 67789999999999 995 444443 566666677789999999996
No 35
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima}
Probab=98.08 E-value=3.9e-06 Score=95.24 Aligned_cols=96 Identities=20% Similarity=0.279 Sum_probs=70.5
Q ss_pred cEEEEcCCCCCCCcccchHHHhHHHHHHHHHHHHhCCCeeEEeccccCCCchHHHHHHhhchhhhhcCCCHHHHHHHHHH
Q 003799 151 NFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKAAK 230 (794)
Q Consensus 151 ~f~i~~~pPy~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G~D~hGlpie~~~~k~~~~~~~~~~~~~~~~~~~~~ 230 (794)
.++++-=+|+|||+|||||+++.++.|.++|. ..|.-++.+- +.... + .
T Consensus 12 ~vv~~RfaPsPTG~LHiG~aRtAl~n~~~Ar~--~~G~~iLRie---DtD~~-------------r---~---------- 60 (481)
T 2o5r_A 12 HMVRVRFAPSPTGFLHVGGARTALFNFLFARK--EKGKFILRIE---DTDLE-------------R---S---------- 60 (481)
T ss_dssp -CCEEEECCCCCSCCBHHHHHHHHHHHHHHHH--HTCEEEECBC---CSSCC-------------S---G----------
T ss_pred eEEEEEECCCCCCCcCHHHHHHHHHHHHHHHH--cCCeEEEEEe---cCCcc-------------c---c----------
Confidence 34555569999999999999999999999998 6787776644 32210 0 0
Q ss_pred HHHHHHHHHHHHHHHcCCccCCCC---------ccccCChHHHHHHHHHHHHHHHcCCeee
Q 003799 231 FAKATVKAQMASFKRYGVWADWNN---------PYLTLDPEYEAAQIEVFGQMSLQGYIYR 282 (794)
Q Consensus 231 ~a~~~~~~~~~~~~~lGi~~dwd~---------~~~T~d~~~~~~v~~~f~~L~~kGlIy~ 282 (794)
..++.+.+.++++.||+ +||. +|+. .++.....++..+|.++|++|.
T Consensus 61 -~~~~~~~I~~~l~wlGl--~~de~p~~gg~~g~y~Q--S~r~~~y~~~a~~L~~~G~aY~ 116 (481)
T 2o5r_A 61 -EREYEEKLMESLRWLGL--LWDEGPDVGGDHGPYRQ--SERVEIYREHAERLVKEGKAYY 116 (481)
T ss_dssp -GGHHHHHHHHHHHHHTC--CCSBBTTTBCTTCCCBG--GGGHHHHHHHHHHHHHTTSEEE
T ss_pred -HHHHHHHHHHHHHHcCC--CCCCCcccCCCCCceee--eccHHHHHHHHHHHHHCCCeeE
Confidence 12345557889999999 9985 2442 3566778889999999999984
No 36
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}
Probab=98.04 E-value=5.3e-06 Score=96.22 Aligned_cols=96 Identities=19% Similarity=0.260 Sum_probs=70.0
Q ss_pred CcEEEEcCCCCCCCcccchHHHhHHHHHHHHHHHHhCCCeeEEeccccCCCchHHHHHHhhchhhhhcCCCHHHHHHHHH
Q 003799 150 ENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKAA 229 (794)
Q Consensus 150 ~~f~i~~~pPy~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G~D~hGlpie~~~~k~~~~~~~~~~~~~~~~~~~~ 229 (794)
++..+=- +|.|||.|||||+++.++.+.++|. ..|.-++.+==+|. . ..
T Consensus 128 ~~v~~RF-aPsPTG~LHiG~artAl~n~l~Ar~--~~G~~ilRieDtD~------------------~-r~--------- 176 (592)
T 3al0_C 128 ELVRVRF-APSPTGHLHVGGARTALFNWMFARK--EGGKFILRIEDTDT------------------E-RS--------- 176 (592)
T ss_dssp CCCEEEE-CCCSSSCCBHHHHHHHHHHHHHHHH--HTCEEEECBCCCCS------------------S-SC---------
T ss_pred CeEEEEE-CCCCCCCccHHHHHHHHHHHHHHHh--cCCcEEEEecCcCh------------------h-hc---------
Confidence 3444444 4999999999999999999999986 45655554422220 0 01
Q ss_pred HHHHHHHHHHHHHHHHcCCccCCCC---------ccccCChHHHHHHHHHHHHHHHcCCeee
Q 003799 230 KFAKATVKAQMASFKRYGVWADWNN---------PYLTLDPEYEAAQIEVFGQMSLQGYIYR 282 (794)
Q Consensus 230 ~~a~~~~~~~~~~~~~lGi~~dwd~---------~~~T~d~~~~~~v~~~f~~L~~kGlIy~ 282 (794)
..++.+.+.++++.||+ +||. +|+.+ ++.....++..+|.++|++|.
T Consensus 177 --~~~~~~~I~~dL~wlGl--~~D~~~~~gG~~gp~~qS--er~~~y~~~~~~L~~~G~aY~ 232 (592)
T 3al0_C 177 --SREYEQQILESLRWCGL--DWDEGPDIGGDFGPYRQS--ERLEIYREYAEKLVEDKRAYY 232 (592)
T ss_dssp --CHHHHHHHHHHHHHTTC--CCSBBTTTBCTTCCCBST--TCHHHHHHHHHHHHHTTTEEE
T ss_pred --cHHHHHHHHHHHHHcCC--CCCCCCCcCCCCCCeeee--CCHHHHHHHHHHHHHcCCceE
Confidence 23356678999999999 9998 35544 445788899999999999996
No 37
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans}
Probab=98.03 E-value=5e-06 Score=98.84 Aligned_cols=90 Identities=23% Similarity=0.330 Sum_probs=68.4
Q ss_pred CCCCCCCcccchHHHhHHHHHHHHHHHHhCCCeeEEeccccCCCchHHHHHHhhchhhhhcCCCHHHHHHHHHHHHHHHH
Q 003799 157 GPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKAAKFAKATV 236 (794)
Q Consensus 157 ~pPy~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G~D~hGlpie~~~~k~~~~~~~~~~~~~~~~~~~~~~a~~~~ 236 (794)
=+|.|||.||||||++.++...++| +|.+.|+.-+|+.-.+ +. ..++.
T Consensus 71 FaPSPtG~LHIGhARtAL~n~l~Ar-----~~gG~fiLRIEDTD~~-------------R~--------------~~e~~ 118 (851)
T 2hz7_A 71 FPPDPSGYAHLGHVFASLLDFNTAR-----QYGGQFNLRMDDTNPE-------------LA--------------RQEYV 118 (851)
T ss_dssp ECCCSSSCCBHHHHHHHHHHHHHHH-----HTTCEEEEEECCCCTT-------------TC--------------CHHHH
T ss_pred eCCCCCCCccHHHHHHHHHHHHHHH-----HcCCEEEEEECcCCcc-------------cc--------------cHHHH
Confidence 3899999999999999999766666 4555666655554211 00 34567
Q ss_pred HHHHHHHHHcCCccCCC-CccccCChHHHHHHHHHHHHHHHcCCeee
Q 003799 237 KAQMASFKRYGVWADWN-NPYLTLDPEYEAAQIEVFGQMSLQGYIYR 282 (794)
Q Consensus 237 ~~~~~~~~~lGi~~dwd-~~~~T~d~~~~~~v~~~f~~L~~kGlIy~ 282 (794)
+.+.++++.||+ +|+ .+++.+ +|.....+...+|.++|++|.
T Consensus 119 ~~IledL~wLGl--~wde~~~~qS--er~d~y~e~a~~LI~~G~AY~ 161 (851)
T 2hz7_A 119 DSIADDLKWLGL--DWGEHFYYAS--DYFDRYYAYAEQLIRQGDAYV 161 (851)
T ss_dssp HHHHHHHHHHTC--CCTTCEEEGG--GGHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHcCC--CCCCCcccHh--hhHHHHHHHHHHHHHCCCcEe
Confidence 789999999999 995 444443 778888999999999999996
No 38
>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis}
Probab=98.00 E-value=8.1e-06 Score=92.23 Aligned_cols=89 Identities=21% Similarity=0.391 Sum_probs=67.1
Q ss_pred CCCCCCcccchHHHhHHHHHHHHHHHHhCCCeeEEeccccCCCchHHHHHHhhchhhhhcCCCHHHHHHHHHHHHHHHHH
Q 003799 158 PPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKAAKFAKATVK 237 (794)
Q Consensus 158 pPy~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G~D~hGlpie~~~~k~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 237 (794)
+|.|||.|||||+++.++...++|. ..|.-++.+--+|. ... ..++.+
T Consensus 31 APSPTG~lHiG~~rtal~n~l~Ar~--~~G~filRieDtD~-----------------------~R~-------~~~~~~ 78 (490)
T 4g6z_A 31 APSPTGFIHLGNIRSALYPWAFARK--MKGTFVLRIEDTDV-----------------------ERS-------SQEAVD 78 (490)
T ss_dssp CCCCCSCCBHHHHHHHHHHHHHHHH--TTCEEEEEECCCCG-----------------------GGC-------CHHHHH
T ss_pred CCCCCCCccHHHHHHHHHHHHHHHh--cCCeEEEEeCCCCc-----------------------ccc-------cHHHHH
Confidence 7999999999999999998888874 35555554443331 100 234677
Q ss_pred HHHHHHHHcCCccCCCC-ccccCChHHHHHHHHHHHHHHHcCCeee
Q 003799 238 AQMASFKRYGVWADWNN-PYLTLDPEYEAAQIEVFGQMSLQGYIYR 282 (794)
Q Consensus 238 ~~~~~~~~lGi~~dwd~-~~~T~d~~~~~~v~~~f~~L~~kGlIy~ 282 (794)
.+.++++.||+ +||. +|+.+ ++.....+++.+|.++|++|.
T Consensus 79 ~i~~dl~wlGl--~~d~~~~~qS--~r~~~y~~~~~~Li~~G~aY~ 120 (490)
T 4g6z_A 79 AILEGMAWLGL--DYDEGPYYQM--QRMDRYREVLAQMQEKGLVYP 120 (490)
T ss_dssp HHHHHHHHTTC--CCSEEEEEGG--GCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHcCC--CCCCCCcccc--cCHHHHHHHHHHHHHCCCEEe
Confidence 78999999999 9997 34433 677888899999999999995
No 39
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus}
Probab=97.93 E-value=6.5e-06 Score=93.53 Aligned_cols=89 Identities=16% Similarity=0.330 Sum_probs=65.5
Q ss_pred CCCCCCcccchHHHhHHHHHHHHHHHHhCCCeeEEeccccCCCchHHHHHHhhchhhhhcCCCHHHHHHHHHHHHHHHHH
Q 003799 158 PPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKAAKFAKATVK 237 (794)
Q Consensus 158 pPy~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G~D~hGlpie~~~~k~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 237 (794)
+|.|||.|||||+++.++...++| ++.+.|+.-+|+... . +. ..++.+
T Consensus 7 APSPtG~lHiG~artal~n~l~Ar-----~~~G~filRieDtD~------~-------R~--------------~~~~~~ 54 (492)
T 2cfo_A 7 APSPTGNLHIGTARTAVFNWLYAR-----HRGGKFILRIEDTDR------E-------RS--------------RPEYTE 54 (492)
T ss_dssp CCCTTSCCBHHHHHHHHHHHHHHH-----HTTCEEEEEECCCSS------S-------SC--------------CHHHHH
T ss_pred CCCCCCCccHHHHHHHHHHHHHHH-----hcCCeEEEEEeeCCc------c-------cc--------------chHHHH
Confidence 799999999999999998655554 345555554554321 0 10 234567
Q ss_pred HHHHHHHHcCCccCCCC-ccccCChHHHHHHHHHHHHHHHcCCeee
Q 003799 238 AQMASFKRYGVWADWNN-PYLTLDPEYEAAQIEVFGQMSLQGYIYR 282 (794)
Q Consensus 238 ~~~~~~~~lGi~~dwd~-~~~T~d~~~~~~v~~~f~~L~~kGlIy~ 282 (794)
.+.++++.||+ +||. +|+.+ ++.....++..+|.++|++|.
T Consensus 55 ~i~~dL~wLGl--~wde~~~~QS--~r~~~y~~~~~~Li~~G~AY~ 96 (492)
T 2cfo_A 55 NILEGLQWLGL--TWDEGPYFQS--DRLDLYRQAIQTLLDKGLAYY 96 (492)
T ss_dssp HHHHHHHHTTC--CCSEEEEEGG--GCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHcCC--CCCCCCcccc--CCHHHHHHHHHHHHHCCCceE
Confidence 78999999999 9997 55443 667788889999999999996
No 40
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B*
Probab=97.80 E-value=2.7e-05 Score=88.27 Aligned_cols=90 Identities=17% Similarity=0.234 Sum_probs=65.7
Q ss_pred CCCCCCCcccchHHHhHHHHHHHHHHHHhCCCeeEEeccccCCCchHHHHHHhhchhhhhcCCCHHHHHHHHHHHHHHHH
Q 003799 157 GPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKAAKFAKATV 236 (794)
Q Consensus 157 ~pPy~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G~D~hGlpie~~~~k~~~~~~~~~~~~~~~~~~~~~~a~~~~ 236 (794)
=+|.|||.|||||+++.++.-.++|- ..|.-++.+ |+.. +..- ..++.
T Consensus 30 FAPsPtG~LHiG~~rtal~n~l~Ar~--~~G~filRi---eDtD--------------------~~R~-------~~~~~ 77 (488)
T 3afh_A 30 FAPSPTGHLHVGGARTALFNWMFARK--EGGKFILRI---EDTD--------------------TERS-------SREYE 77 (488)
T ss_dssp ECCCCSSSCBHHHHHHHHHHHHHHHH--HTCEEEECB---CCCC--------------------TTTC-------CHHHH
T ss_pred ECCCCCCCccHHHHHHHHHHHHHHHH--cCCEEEEEE---eeCC--------------------cccc-------cHHHH
Confidence 48999999999999999988777664 345444433 3321 1110 23356
Q ss_pred HHHHHHHHHcCCccCCCCc---------cccCChHHHHHHHHHHHHHHHcCCeee
Q 003799 237 KAQMASFKRYGVWADWNNP---------YLTLDPEYEAAQIEVFGQMSLQGYIYR 282 (794)
Q Consensus 237 ~~~~~~~~~lGi~~dwd~~---------~~T~d~~~~~~v~~~f~~L~~kGlIy~ 282 (794)
+.+.++++.||+ +||.. |+.+ ++.....+...+|.++|++|.
T Consensus 78 ~~I~~dL~wlGl--~wDe~~~~gG~~gp~~QS--er~~~y~~~~~~L~~~G~aY~ 128 (488)
T 3afh_A 78 QQILESLRWCGL--DWDEGPDIGGDFGPYRQS--ERLEIYREYAEKLVEDKRAYY 128 (488)
T ss_dssp HHHHHHHHHTTC--CCSBBTTTBCTTCCCBGG--GCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHcCC--CCCcCCCCCCCCCCeeee--CCHHHHHHHHHHHHHcCCeEe
Confidence 678999999999 99983 5543 556788899999999999996
No 41
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A
Probab=97.78 E-value=2e-05 Score=89.04 Aligned_cols=89 Identities=16% Similarity=0.268 Sum_probs=64.8
Q ss_pred CCCCCCcccchHHHhHHHHHHHHHHHHhCCCeeEEeccccCCCchHHHHHHhhchhhhhcCCCHHHHHHHHHHHHHHHHH
Q 003799 158 PPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKAAKFAKATVK 237 (794)
Q Consensus 158 pPy~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G~D~hGlpie~~~~k~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 237 (794)
+|.|||.|||||+++.++.-.++|- ..|. |+.-+|+...+ + . ..++.+
T Consensus 7 aPsPtG~LHiG~~rtal~n~l~Ar~--~~G~---filRieDtD~~-------------R--~------------~~~~~~ 54 (468)
T 1j09_A 7 APSPTGDPHVGTAYIALFNYAWARR--NGGR---FIVRIEDTDRA-------------R--Y------------VPGAEE 54 (468)
T ss_dssp CCCCSSSCBHHHHHHHHHHHHHHHH--TTCE---EEECBCCCCTT-------------S--C------------CTTHHH
T ss_pred CCCCCCCccHHHHHHHHHHHHHHHH--cCCE---EEEEeCcCCCc-------------c--c------------ChHHHH
Confidence 8999999999999999988888773 3454 33333443110 1 0 223466
Q ss_pred HHHHHHHHcCCccCCCCc---------cccCChHHHHHHHHHHHHHHHcCCeee
Q 003799 238 AQMASFKRYGVWADWNNP---------YLTLDPEYEAAQIEVFGQMSLQGYIYR 282 (794)
Q Consensus 238 ~~~~~~~~lGi~~dwd~~---------~~T~d~~~~~~v~~~f~~L~~kGlIy~ 282 (794)
.+.++++.||+ +||.. |+. .++-..-.+...+|.++|++|.
T Consensus 55 ~I~~dl~wlGl--~wd~~~~~gG~~gp~~Q--S~r~~~y~~~~~~L~~~G~aY~ 104 (468)
T 1j09_A 55 RILAALKWLGL--SYDEGPDVGGPHGPYRQ--SERLPLYQKYAEELLKRGWAYR 104 (468)
T ss_dssp HHHHHHHHTTC--CCSBBTTTBCTTCCCBG--GGCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHcCC--CCCCCCCCCCCCCCeec--cCCHHHHHHHHHHHHHcCCeEE
Confidence 68999999999 99975 443 3667788889999999999995
No 42
>4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi}
Probab=97.77 E-value=2.7e-05 Score=89.23 Aligned_cols=91 Identities=12% Similarity=0.151 Sum_probs=63.2
Q ss_pred CCCCCCcccchHHHhHHHHHHHHHHHHhCCCeeEEeccccCCCchHHHHHHhhchhhhhcCCCHHHHHHHHHHHHHHHHH
Q 003799 158 PPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKAAKFAKATVK 237 (794)
Q Consensus 158 pPy~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G~D~hGlpie~~~~k~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 237 (794)
+|.|||.||||||++.++.-.++|- ..|.-++. +|+. ++..- ..++.+
T Consensus 30 APsPtG~LHiG~artAl~n~~~Ar~--~~G~fiLR---ieDt--------------------D~~R~-------~~~~~~ 77 (512)
T 4gri_A 30 APSPTGLQHIGGIRTALFNYFFAKS--CGGKFLLR---IEDT--------------------DQSRY-------SPEAEN 77 (512)
T ss_dssp CCCSSSCCBHHHHHHHHHHHHHHHH--TTCEEEEC---BCCC--------------------CTTSC-------CHHHHH
T ss_pred CcCCCCcccHHHHHHHHHHHHHHHH--cCCEEEEE---eCcC--------------------CCCcC-------CHHHHH
Confidence 8999999999999999998888764 45644433 3332 21111 223466
Q ss_pred HHHHHHHHcCCccCCCCccc------c-CChHHHHHHHHHHHHHHHcCCeee
Q 003799 238 AQMASFKRYGVWADWNNPYL------T-LDPEYEAAQIEVFGQMSLQGYIYR 282 (794)
Q Consensus 238 ~~~~~~~~lGi~~dwd~~~~------T-~d~~~~~~v~~~f~~L~~kGlIy~ 282 (794)
.+.++++.||+ +||..-. . ...++...-.+...+|.++|++|.
T Consensus 78 ~I~~~L~wlGl--~wDe~p~~~g~~~py~QS~r~~~Y~~~~~~L~~~G~aY~ 127 (512)
T 4gri_A 78 DLYSSLKWLGI--SFDEGPVVGGDYAPYVQSQRSAIYKQYAKYLIESGHAYY 127 (512)
T ss_dssp HHHHHHHHHTC--CCSBBTTTBCTTCCCBGGGCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHcCC--CCCcCCccCCCCCCccccchHHHHHHHHHHHHHcCCccc
Confidence 78999999999 9985211 1 122455666788899999999995
No 43
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A
Probab=97.73 E-value=3.8e-05 Score=87.16 Aligned_cols=89 Identities=17% Similarity=0.281 Sum_probs=66.2
Q ss_pred CCCCCCcccchHHHhHHHHHHHHHHHHhCCCeeEEeccccCCCchHHHHHHhhchhhhhcCCCHHHHHHHHHHHHHHHHH
Q 003799 158 PPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKAAKFAKATVK 237 (794)
Q Consensus 158 pPy~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G~D~hGlpie~~~~k~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 237 (794)
+|-|||.|||||+++.++.-.++|- ..|.-++.+= +. ++..- ..++.+
T Consensus 12 APsPTG~LHiG~~rtAL~n~l~Ar~--~gG~fiLRie---Dt--------------------D~~R~-------~~~~~~ 59 (498)
T 2ja2_A 12 CPSPTGTPHVGLVRTALFNWAYARH--TGGTFVFRIE---DT--------------------DAQRD-------SEESYL 59 (498)
T ss_dssp CCCSSSSCBHHHHHHHHHHHHHHHH--HTCEEEECBC---CC--------------------CTTTC-------CHHHHH
T ss_pred CcCCCCCccHHHHHHHHHHHHHHHH--cCCEEEEEEC---cC--------------------CCccc-------ChHHHH
Confidence 7999999999999999999888874 4565444432 22 11111 223566
Q ss_pred HHHHHHHHcCCccCCCC---------ccccCChHHHHHHHHHHHHHHHcCCeee
Q 003799 238 AQMASFKRYGVWADWNN---------PYLTLDPEYEAAQIEVFGQMSLQGYIYR 282 (794)
Q Consensus 238 ~~~~~~~~lGi~~dwd~---------~~~T~d~~~~~~v~~~f~~L~~kGlIy~ 282 (794)
.+.++++.||+ +||. +|+.+ ++-..-.+...+|.++|++|.
T Consensus 60 ~I~~~L~wlGl--~wDegp~~gG~~~~~~QS--~r~~~y~~~~~~L~~~g~aY~ 109 (498)
T 2ja2_A 60 ALLDALRWLGL--DWDEGPEVGGPYGPYRQS--QRAEIYRDVLARLLAAGEAYH 109 (498)
T ss_dssp HHHHHHHHHTC--CCSBBTTTBCTTCCCBGG--GCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHcCC--CcCCCcCcCCCCCCeeee--cCHHHHHHHHHHHHHcCCeEE
Confidence 78999999999 9997 55543 566777889999999999995
No 44
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=95.27 E-value=0.0059 Score=72.81 Aligned_cols=42 Identities=17% Similarity=0.308 Sum_probs=37.8
Q ss_pred ccccccccCCCCcEEEcccCccccchhhHHHHHHhhhcCeee
Q 003799 527 EHKYPYDWRTKKPTIFRATEQWFASVEGFRQAAMDAIGQVKW 568 (794)
Q Consensus 527 ~h~yp~~WRt~~pii~r~t~QWfi~~~~~~~~~l~~i~~v~~ 568 (794)
.+.+|+||||++|++++.++|||++++.+++.+++.+++..|
T Consensus 167 ~l~~p~~~r~g~~v~~~~~~qwF~~l~~~~~~l~~~~~~~~w 208 (722)
T 1rqg_A 167 ILINPRCAICGRPISFRDSAHYYIKMQDFAERLKRWIEKQPW 208 (722)
T ss_dssp SSBSCBCTTTCCBCEEEEEEEEEECGGGTHHHHHHHHHSSCC
T ss_pred hccCCcccCCCcEeEEEEeccEEEEhHHHHHHHHHHHHhCCC
Confidence 456899999999999999999999999999999998876654
No 45
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=93.82 E-value=0.027 Score=64.89 Aligned_cols=60 Identities=7% Similarity=0.103 Sum_probs=47.9
Q ss_pred cchHHHHHHHHhcCCccccc-----------------------ccccccccccCCCCcEEEcccCccccchhhHHHHHHh
Q 003799 505 DGNVAVVKYLDEQMSLIMEE-----------------------PYEHKYPYDWRTKKPTIFRATEQWFASVEGFRQAAMD 561 (794)
Q Consensus 505 ea~~~ii~~L~~~g~l~~~~-----------------------~~~h~yp~~WRt~~pii~r~t~QWfi~~~~~~~~~l~ 561 (794)
++-..++..|.++|.+.... .+.+.+++|||||+|++++.++|||++++.+++++++
T Consensus 108 ~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~~~l~d~~v~~~~~~~g~~~~~~~~sg~~ve~~~~~~~f~~l~~~~~~l~~ 187 (542)
T 3u1f_A 108 AVVKELWTKLEQKGDIYLGRYEGWYSISDESFLTPQNITDGVDKDGNPCKVSLESGHVVTWVSEENYMFRLSAFRERLLE 187 (542)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGEEEEECTTSCEEEEETTTCCBEEEEEEEEEEECGGGGHHHHHH
T ss_pred HHHHHHHHHHhhcCcEEecceeEEeeccCcccchhhhhhccccccCccccccCCCCCcceeeccccceecchhHHHHHHH
Confidence 34456778888888776432 2236789999999999999999999999999998887
Q ss_pred hhc
Q 003799 562 AIG 564 (794)
Q Consensus 562 ~i~ 564 (794)
.+.
T Consensus 188 ~~~ 190 (542)
T 3u1f_A 188 WYH 190 (542)
T ss_dssp HHH
T ss_pred HHh
Confidence 654
No 46
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A
Probab=93.58 E-value=0.036 Score=63.08 Aligned_cols=61 Identities=18% Similarity=0.112 Sum_probs=48.7
Q ss_pred cchHHHHHHHHhcCCcccccc---c--------c-c--ccccccCCCCcEEEcccCccccchhhHHHHHHhhhcC
Q 003799 505 DGNVAVVKYLDEQMSLIMEEP---Y--------E-H--KYPYDWRTKKPTIFRATEQWFASVEGFRQAAMDAIGQ 565 (794)
Q Consensus 505 ea~~~ii~~L~~~g~l~~~~~---~--------~-h--~yp~~WRt~~pii~r~t~QWfi~~~~~~~~~l~~i~~ 565 (794)
+.-..+++.|.++|.+...+. + . + ..++||||++|++++.++|||++++.+++.+++.+++
T Consensus 102 ~~~~~~~~~L~~~G~iy~~~~~~~~~~~~~~~~~~~~l~~g~c~~~~~~v~~~~~~~wf~~l~~~~~~l~~~~~~ 176 (500)
T 2d5b_A 102 KVVQLVLKKVYEAGDIYYGEYEGLYCVSCERFYTEKELVEGLCPIHGRPVERRKEGNYFFRMEKYRPWLQEYIQE 176 (500)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCTTTSBTTBCTTTCSBCEEEEEEEEEECGGGGHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCCEEecceEEecCCCcCcccCchhccCCcCCCCCCeeeEEecCceEEEcHHHHHHHHHHHHh
Confidence 455678899999998876421 1 1 1 2367999999999999999999999999999988875
No 47
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*
Probab=90.38 E-value=0.092 Score=59.70 Aligned_cols=61 Identities=10% Similarity=0.076 Sum_probs=33.7
Q ss_pred cchHHHHHHHHhcCCcccccc---c---------cccc---ccccCCCCcEEEcccCccccchhhHHHHHHhhhcC
Q 003799 505 DGNVAVVKYLDEQMSLIMEEP---Y---------EHKY---PYDWRTKKPTIFRATEQWFASVEGFRQAAMDAIGQ 565 (794)
Q Consensus 505 ea~~~ii~~L~~~g~l~~~~~---~---------~h~y---p~~WRt~~pii~r~t~QWfi~~~~~~~~~l~~i~~ 565 (794)
+.-..+++.|.++|++...+. + .+.. +.||||+.|++++.++|||++++.+++++++.+++
T Consensus 104 ~~~~~~~~~L~~~G~iY~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~wf~~l~~~~~~l~~~~~~ 179 (497)
T 2csx_A 104 KFVQKVFEECYKRGDIYLGEYEGWYCVGCEEFKSEAELAEDHTCPIHQKKCEYIKEPSYFFRLSKYQDKLLELYEK 179 (497)
T ss_dssp HHHHHHHHHHHHTTCEEEEEC---------------------------------CCEEEEECTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCEEecceeeccCcccCeEccHHHhccCCCCCCCCCCCeEEecCceEEEcHHHHHHHHHHHHh
Confidence 344567888999998775421 1 1112 78999999999999999999999999888877653
No 48
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A*
Probab=88.45 E-value=0.25 Score=52.86 Aligned_cols=65 Identities=18% Similarity=0.327 Sum_probs=39.8
Q ss_pred CCCcccchHHHhHHHHHHHHHHHHhCCCeeEEeccccCCCchHHHHHHhhchhhhhcCCCHHHHHHHHHHHHHHHHHHHH
Q 003799 161 ANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKAAKFAKATVKAQM 240 (794)
Q Consensus 161 ~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G~D~hGlpie~~~~k~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 240 (794)
|+|.|||||..+.+.. +.++|+ |+++.+..| |-|++- .+.+++++++.++ ...
T Consensus 12 PTg~lHlG~~lg~l~~--~~~lQ~--g~~~~~~ia-D~ha~~--------------~~~~~~~l~~~~~--------~~~ 64 (322)
T 3tzl_A 12 PSGDLHIGNYFGAIKQ--MVDAQE--KSQMFMFIA-NYHAMT--------------SSQDGEKLKQNSL--------KAA 64 (322)
T ss_dssp CSSCCBHHHHHHTHHH--HHHTTT--TSCCEEEEC-HHHHTT--------------TCCCHHHHHHHHH--------HHH
T ss_pred CCccccHHHHHHHHHH--HHHHhc--CCCEEEEEe-cCeeec--------------CCCCHHHHHHHHH--------HHH
Confidence 6789999999876654 445666 998877765 333321 1235666544332 345
Q ss_pred HHHHHcCCccCCCC
Q 003799 241 ASFKRYGVWADWNN 254 (794)
Q Consensus 241 ~~~~~lGi~~dwd~ 254 (794)
.++...|+ |-+.
T Consensus 65 ~~~lA~Gl--dp~k 76 (322)
T 3tzl_A 65 AAFLSLGI--DPQK 76 (322)
T ss_dssp HHHHHTTC--CTTT
T ss_pred HHHHHcCC--Cccc
Confidence 55667898 6544
No 49
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus}
Probab=88.40 E-value=0.95 Score=48.39 Aligned_cols=77 Identities=16% Similarity=0.174 Sum_probs=43.4
Q ss_pred CcEEEEcCCCCCCCcccchHHHhHHHHHHHHHHHHhCCCeeEEeccccCCCchHHHHHHhhchhhhhcCCCHHHHHHHHH
Q 003799 150 ENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKAA 229 (794)
Q Consensus 150 ~~f~i~~~pPy~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G~D~hGlpie~~~~k~~~~~~~~~~~~~~~~~~~~ 229 (794)
+++.+..|. -|+|.||+||+ ..+. .+.+++.. |+++.+..|=. |+ .. + ...+++++++
T Consensus 31 ~~~~vy~G~-~PTg~lHlG~l-~~l~--~~~~lq~~-g~~~~~~i~D~-~a------~~---~----d~~~~~~i~~--- 88 (323)
T 2cyb_A 31 EKPRAYVGY-EPSGEIHLGHM-MTVQ--KLMDLQEA-GFEIIVLLADI-HA------YL---N----EKGTFEEIAE--- 88 (323)
T ss_dssp SCCEEEEEE-CCCSCCBHHHH-HHHH--HHHHHHHT-TCEEEEEECHH-HH------HH---T----TCCCHHHHHH---
T ss_pred CCCEEEECc-CCCCcchHHHH-HHHH--HHHHHHHC-CCcEEEEECCc-ee------Ec---C----CCCCHHHHHH---
Confidence 344555554 47899999995 3333 34455543 88876665321 11 11 0 1125655422
Q ss_pred HHHHHHHHHHHHHHHHcCCccCCCCc
Q 003799 230 KFAKATVKAQMASFKRYGVWADWNNP 255 (794)
Q Consensus 230 ~~a~~~~~~~~~~~~~lGi~~dwd~~ 255 (794)
+...+.+++..+|+ ||+..
T Consensus 89 -----~~~~~~~~~~a~Gl--dp~k~ 107 (323)
T 2cyb_A 89 -----VADYNKKVFIALGL--DESRA 107 (323)
T ss_dssp -----HHHHHHHHHHHTTC--CTTTC
T ss_pred -----HHHHHHHHHHHhCC--Cccce
Confidence 23345668889999 88764
No 50
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=88.08 E-value=0.24 Score=56.68 Aligned_cols=60 Identities=10% Similarity=0.272 Sum_probs=45.8
Q ss_pred cchHHHHHHHHhcCCcccccc---cc---ccc------------cccc-CCCCcEEEcccCccccchhhHHHHHHhhhc
Q 003799 505 DGNVAVVKYLDEQMSLIMEEP---YE---HKY------------PYDW-RTKKPTIFRATEQWFASVEGFRQAAMDAIG 564 (794)
Q Consensus 505 ea~~~ii~~L~~~g~l~~~~~---~~---h~y------------p~~W-Rt~~pii~r~t~QWfi~~~~~~~~~l~~i~ 564 (794)
+.-..+++.|.++|.+...+. +. ..+ +.|| ||++|++++.++|||++++.+++++++.++
T Consensus 111 ~~v~~~~~~L~~~G~iY~~~~~v~~~~~~~t~l~~~ev~~g~~G~~c~~~~g~~v~~~~~~qwF~~l~~~~~~l~~~~~ 189 (524)
T 2x1l_A 111 EASKAIWKRMADAGDIYLDAYKGWYSIRDERFFTENETTEQPDGTRIATETGAPVTWTEEQTYFFRLSAYTDRLLALYE 189 (524)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGEEECTTSCEEETTTCCBEEEEEEEEEEECGGGSHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCEEeeeeeeeccCccCccccHHHhccCCCCCccccccCCcceEEecCCeEeeHHHHHHHHHHHHH
Confidence 445678899999998754321 10 001 2577 999999999999999999999999988886
No 51
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix}
Probab=87.06 E-value=0.6 Score=50.81 Aligned_cols=78 Identities=17% Similarity=0.144 Sum_probs=44.1
Q ss_pred cEEEEcCCCCCCCcccchHHHhHHHHHHHHHHHHhCCCeeEEeccccCCCchHHHHHHhhchhhhhcCCCHHHHHHHHHH
Q 003799 151 NFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKAAK 230 (794)
Q Consensus 151 ~f~i~~~pPy~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G~D~hGlpie~~~~k~~~~~~~~~~~~~~~~~~~~~ 230 (794)
++.+..|. -|+|.||||| +..+.. +.++|. .|+++.+..| |-|++ . +. ..+.+++++++.
T Consensus 35 ~~~iy~G~-~PTg~lHlG~-l~~l~~--~~~lQ~-~G~~~~~~ia-D~~a~------~---~~--ps~~~~e~i~~~--- 94 (364)
T 2cya_A 35 RIKGYIGY-EPSGVAHIGW-LVWMYK--VKDLVE-AGVDFSVLEA-TWHAY------I---ND--KLGGDMDLIRAA--- 94 (364)
T ss_dssp CCEEEEEE-CCCSSCBTHH-HHHHHH--HHHHHH-TTCEEEEEEC-HHHHH------H---TT--GGGGCHHHHHHH---
T ss_pred CCEEEecc-CCCCCccHhH-HHHHHH--HHHHHH-CCCCEEEEEe-Ccchh------h---CC--CCCCCHHHHHHH---
Confidence 34444442 3479999999 666554 545555 4888877765 22221 1 10 112356666433
Q ss_pred HHHHHHHHHHHHHHHcCCccCCCCc
Q 003799 231 FAKATVKAQMASFKRYGVWADWNNP 255 (794)
Q Consensus 231 ~a~~~~~~~~~~~~~lGi~~dwd~~ 255 (794)
+ ..+..++..+|+ |.+..
T Consensus 95 -~----~~~~~~~la~G~--dp~k~ 112 (364)
T 2cya_A 95 -A----RIVRRVMEAAGV--PVERV 112 (364)
T ss_dssp -H----HHHHHHHHHTTC--CGGGC
T ss_pred -H----HHHHHHHHHhCC--Cccce
Confidence 2 234567889999 76553
No 52
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A
Probab=86.53 E-value=0.63 Score=49.91 Aligned_cols=66 Identities=17% Similarity=0.295 Sum_probs=39.8
Q ss_pred CCCcccchHHHhHHHHHHHHHHHHhCCCeeEEeccccCCCchHHHHHHhhchhhhhcCCCHHHHHHHHHHHHHHHHHHHH
Q 003799 161 ANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKAAKFAKATVKAQM 240 (794)
Q Consensus 161 ~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G~D~hGlpie~~~~k~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 240 (794)
|+|.|||||.++.+.. +.++|. ||++.+..| |-|++- + ..+++++++. + ..+.
T Consensus 10 PTG~lHlGn~vg~l~~--~~~lQ~--g~~~~~~Ia-D~ha~~---------~-----~~~~e~i~~~----~----~~~~ 62 (328)
T 1i6k_A 10 PSGVITIGNYIGALRQ--FVELQH--EYNCYFCIV-DQHAIT---------V-----WQDPHELRQN----I----RRLA 62 (328)
T ss_dssp CCSCCBHHHHHHTHHH--HHHHTT--TSEEEEEEC-HHHHTT---------S-----CCCHHHHHHH----H----HHHH
T ss_pred CCCcccHHHHHHHHHH--HHHHHc--CCcEEEEEe-Cceeec---------C-----CCCHHHHHHH----H----HHHH
Confidence 5699999999877632 224443 899877664 222211 0 1356665333 2 3456
Q ss_pred HHHHHcCCccCCCCc
Q 003799 241 ASFKRYGVWADWNNP 255 (794)
Q Consensus 241 ~~~~~lGi~~dwd~~ 255 (794)
+++..+|+ |.++.
T Consensus 63 ~~~la~Gl--dp~k~ 75 (328)
T 1i6k_A 63 ALYLAVGI--DPTQA 75 (328)
T ss_dssp HHHHHTTC--CTTTE
T ss_pred HHHHHhCC--Chhhc
Confidence 77789999 77643
No 53
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Probab=85.98 E-value=1.2 Score=51.71 Aligned_cols=135 Identities=10% Similarity=0.034 Sum_probs=87.2
Q ss_pred CCCCchhhhhhhhcCCCCceecChHHHHH--------HHHHHHHHHhHHHHHHhcccCCCCC--CCcCCCCC-ChhhHHH
Q 003799 576 GYGADVLRLWVSSVDYTGDVMIGPQVLRQ--------MSDIYRKLRGTLRYLLGNLHDWRVG--NSISYDDL-PMIDQYA 644 (794)
Q Consensus 576 ~yGaD~lRl~las~~~~~Di~~s~~~l~~--------~~~~~~kl~Nt~rfll~nl~~~~~~--~~~~~~~l-~~~D~~i 644 (794)
..|..++||+.++.++.+++.|+.+.+.. +.-.+.|+...+|-. .+..+. ...+...+ .+.++.+
T Consensus 452 ~vgi~avry~~Ls~~~~s~~~Fd~d~~~~~~g~t~pylqYa~aRi~SIlrka----~~~~~~~~~~~~~~~l~~~~e~~L 527 (607)
T 1f7u_A 452 LVGISAVMIQDMQGKRINNYEFKWERMLSFEGDTGPYLQYAHSRLRSVERNA----SGITQEKWINADFSLLKEPAAKLL 527 (607)
T ss_dssp HHHHHHHHHHHHSSCTTCCEECCHHHHHCCSSSSHHHHHHHHHHHHHHHHHT----TTSCHHHHTTSCGGGCCSHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCCcccCHHHHHHHhccchHHHHHHHHHHHHHHHHh----cCCCcccccccchhhcCCHHHHHH
Confidence 46778999999999999999999887643 223334555544431 111110 00011112 3556788
Q ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhHHHHHhhccccccCCCChH---hHHHHHHHHHHHHHHHHHHhc
Q 003799 645 LFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRLYTGGTTSF---TRRSCQTVLSAHLLSIVRVIA 720 (794)
Q Consensus 645 l~~l~~lv~~v~~~~e~y~f~~ai~~l~~f~~~~lsn~Yle~~K~rly~~~~d~~---~r~s~~~vL~~iL~~l~~lLa 720 (794)
+..|.++.+.+.+++++++.+.++.-++++... +..+|=+. ++. ++ +.. .|-.+......+|..-+.||.
T Consensus 528 ~~~l~~fp~vv~~a~~~~~P~~l~~Yl~~La~~-fn~fY~~~---~Vl-~~-~~~~~~aRL~L~~a~~~vL~~gL~LLG 600 (607)
T 1f7u_A 528 IRLLGQYPDVLRNAIKTHEPTTVVTYLFKLTHQ-VSSCYDVL---WVA-GQ-TEELATARLALYGAARQVLYNGMRLLG 600 (607)
T ss_dssp HHHHTTHHHHHHHHHHHCCHHHHHHHHHHHHHH-HHHHHHHC---CST-TS-CHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH-HHHHHHhC---CCC-CC-CHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 899999999999999999999999999998854 88888653 222 22 222 243444444566666666664
No 54
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Probab=85.53 E-value=0.4 Score=54.96 Aligned_cols=61 Identities=8% Similarity=0.063 Sum_probs=45.7
Q ss_pred cchHHHHHHHHhcCCcccccccc------------cc------cccccCCCCcEEEcccCccccchhhHHHHHHhhhcC
Q 003799 505 DGNVAVVKYLDEQMSLIMEEPYE------------HK------YPYDWRTKKPTIFRATEQWFASVEGFRQAAMDAIGQ 565 (794)
Q Consensus 505 ea~~~ii~~L~~~g~l~~~~~~~------------h~------yp~~WRt~~pii~r~t~QWfi~~~~~~~~~l~~i~~ 565 (794)
+.-..+++.|.++|.+...+.-. +. =-+|++|++|++++.++|||++++++++.+++.+++
T Consensus 124 ~~v~~~~~~L~~~G~iY~~~~~~~~~~~~~~~l~~~~~~~~~~g~~c~~~g~~~e~~~~~~~f~~l~~~~~~l~~~~~~ 202 (536)
T 4dlp_A 124 KASQAIWQAMVANGDIYKGGYAGWYSVRDEAYYGEEETEVRADGVRYGPQGTPVEWVEEESYFFRLSAYQDKLLDLYEN 202 (536)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGCEECTTSCEECTTSSBCEEEEEEEEEECGGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCEEEeceeeeecCCcCcccCHHHhhcCCCCCcccCCCCcceEEeccceEEecHHHHHHHHHHHHh
Confidence 34456888999999876532110 10 125899999999999999999999999988877753
No 55
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae}
Probab=84.94 E-value=3.4 Score=45.33 Aligned_cols=83 Identities=17% Similarity=0.109 Sum_probs=44.0
Q ss_pred CCcEEEEcCCCCCCCcccchHHHhHHHHHHHHHHHHhCCCeeEEeccccCCCchHHHHHHhhchhhhhcCCCHHHHHHHH
Q 003799 149 GENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKA 228 (794)
Q Consensus 149 ~~~f~i~~~pPy~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G~D~hGlpie~~~~k~~~~~~~~~~~~~~~~~~~ 228 (794)
+++|.+.+|. -|+|.|||||.++.+. ..++++ .|+++.+..|= -|++ . +. . -.+.+.+
T Consensus 37 ~~p~~vy~G~-~PTG~LHlG~~~~al~---~~~~~q-~g~~~ii~I~D-~ha~------t---~~---~-~~~~e~~--- 94 (394)
T 2dlc_X 37 KRHLKLYWGT-APTGRPHCGYFVPMTK---LADFLK-AGCEVTVLLAD-LHAF------L---DN---M-KAPLEVV--- 94 (394)
T ss_dssp CSCCEEEEEE-CCCSCCBGGGHHHHHH---HHHHHH-TTCEEEEEECH-HHHH------H---TT---T-SSCTTHH---
T ss_pred CCCeEEEEEe-CCCCCccHHHHHHHHH---HHHHHH-cCCcEEEEEcC-Cccc------c---CC---C-CCcHHHH---
Confidence 3454445442 2389999999876554 334444 68887666541 1111 0 00 0 0122221
Q ss_pred HHHHHHHHHHHHHHHHHcCCccCCCCc
Q 003799 229 AKFAKATVKAQMASFKRYGVWADWNNP 255 (794)
Q Consensus 229 ~~~a~~~~~~~~~~~~~lGi~~dwd~~ 255 (794)
+..+..+...+...+..+|+ ||+..
T Consensus 95 ~~~~~~~~~~i~~~l~a~Gl--dp~k~ 119 (394)
T 2dlc_X 95 NYRAKYYELTIKAILRSINV--PIEKL 119 (394)
T ss_dssp HHHHHHHHHHHHHHHHHTTC--CCTTC
T ss_pred HHHHHHHHHHHHHHHHHcCC--ChhHc
Confidence 22233334445667889999 88874
No 56
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A*
Probab=82.21 E-value=1.2 Score=48.27 Aligned_cols=67 Identities=21% Similarity=0.204 Sum_probs=36.0
Q ss_pred EEEEcCCCCCCCc-ccchHHHhHHHHHHHHHHHHhCCCeeEEeccccCCCchHHHHHHhhchhhhhcCCCHHHHHHHH
Q 003799 152 FVLHDGPPYANGN-LHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKA 228 (794)
Q Consensus 152 f~i~~~pPy~nG~-lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G~D~hGlpie~~~~k~~~~~~~~~~~~~~~~~~~ 228 (794)
+.+.+|. -|+|+ ||||| +..+.. +.++|. .|+++.++.| |-|++-. ....+..++..++++++++.+
T Consensus 47 ~~vy~G~-~PTg~sLHLGh-l~~l~~--~~~lQ~-~G~~~~~lIa-D~hal~~----dp~g~~~~R~~l~~e~i~~n~ 114 (356)
T 2pid_A 47 QTIYCGF-DPTADSLHVGH-LLALLG--LFHLQR-AGHNVIALVG-GATARLG----DPSGRTKEREALETERVRANA 114 (356)
T ss_dssp CEEEEEE-CCSSSSCBHHH-HHHHHH--HHHHHH-TTCEEEEEEC-TTGGGTC----CCTTCSSCCCCCCHHHHHHHH
T ss_pred CEEEEee-cCCCCcccHHH-HHHHHH--HHHHHH-CCCcEEEEEc-cceeeec----CCcccccccccCCHHHHHHHH
Confidence 4444442 25686 99999 555544 556665 4898877765 3333210 001111234456788875443
No 57
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=81.28 E-value=0.91 Score=52.30 Aligned_cols=37 Identities=14% Similarity=0.209 Sum_probs=33.2
Q ss_pred ccccccCCCCcEEEcccCccccchhhHHHHHHhhhcC
Q 003799 529 KYPYDWRTKKPTIFRATEQWFASVEGFRQAAMDAIGQ 565 (794)
Q Consensus 529 ~yp~~WRt~~pii~r~t~QWfi~~~~~~~~~l~~i~~ 565 (794)
..|+|++|+++++++.++|||++++.+++.+.+.+++
T Consensus 184 ~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~ 220 (560)
T 3h99_A 184 IEPKSVVSGATPVMRDSEHFFFDLPSFSEMLQAWTRS 220 (560)
T ss_dssp EEEEETTTCCCCEEEEEEEEEECGGGGHHHHHHHHHT
T ss_pred cCCccccCCCCceEEecceEEEEHHHHHHHHHHHHHh
Confidence 4589999999999999999999999999988887765
No 58
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii}
Probab=80.78 E-value=1.9 Score=47.18 Aligned_cols=79 Identities=20% Similarity=0.232 Sum_probs=45.6
Q ss_pred CCcEEEEcCCCCCCCcccchHHHhHHHHHHHHHHHHhCCCeeEEeccccCCCchHHHHHHhhchhhhhcCCCHHHHHHHH
Q 003799 149 GENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKA 228 (794)
Q Consensus 149 ~~~f~i~~~pPy~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G~D~hGlpie~~~~k~~~~~~~~~~~~~~~~~~~ 228 (794)
+++|.+.+|.- |+|.|||||....+. ..++|.-.|++|.+..| |-|++ . . ....+++++++.+
T Consensus 71 ~~p~~i~sG~~-PTG~lHLGh~v~~~~---~~~lQ~~~g~~~~i~Ia-D~ha~------~---~---~~~~~~e~i~~~~ 133 (392)
T 3jxe_A 71 GRGFFLYTGRG-PSGPMHIGHIIPFFA---TKWLQEKFGVNLYIQIT-DDEKF------L---F---KENLTFDDTKRWA 133 (392)
T ss_dssp TCCCEEEEEEC-CSSCCBHHHHHHHHH---HHHHHHHHCCEEEEEEC-HHHHH------H---H---CSSCCHHHHHHHH
T ss_pred CCCeEEEeccC-CCCchhHHHHHHHHH---HHHHHHhcCCceEEEec-chHHh------h---c---CCCCCHHHHHHHH
Confidence 35566666643 459999999887642 22244435898888776 43321 1 0 1135677764443
Q ss_pred HHHHHHHHHHHHHHHHHcCCccCCCC
Q 003799 229 AKFAKATVKAQMASFKRYGVWADWNN 254 (794)
Q Consensus 229 ~~~a~~~~~~~~~~~~~lGi~~dwd~ 254 (794)
+ ...+++..+|+ |-++
T Consensus 134 ~--------~~~~~~lA~Gl--Dp~k 149 (392)
T 3jxe_A 134 Y--------DNILDIIAVGF--DPDK 149 (392)
T ss_dssp H--------HHHHHHHTTCC--CTTS
T ss_pred H--------HHHHHHHHhCc--Cccc
Confidence 3 34455668898 5444
No 59
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A*
Probab=80.67 E-value=2.8 Score=44.48 Aligned_cols=72 Identities=15% Similarity=0.193 Sum_probs=40.6
Q ss_pred CcEEEEcCCCCCCCcccchHHHhHHHHHHHHHHHHhCCCeeEEeccccCCCchHHHHHHhhchhhhhcCCCHHHHHHHHH
Q 003799 150 ENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKAA 229 (794)
Q Consensus 150 ~~f~i~~~pPy~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G~D~hGlpie~~~~k~~~~~~~~~~~~~~~~~~~~ 229 (794)
+++.+..|. -|+|.||||| +..+.. +.++|. .|+++.+..|=++ + .. + . ..+++++++
T Consensus 27 ~~~~vy~G~-~PTg~lHlGh-l~~l~~--~~~lQ~-~g~~~~~~i~D~~-a------~~---~---~-~~~~e~i~~--- 84 (314)
T 2zp1_A 27 DEKSAYIGF-EPSGKIHLGH-YLQIKK--MIDLQN-AGFDIIILLADLA-A------YL---N---Q-KGELDEIRK--- 84 (314)
T ss_dssp SSEEEEEEE-CCCSSCBHHH-HHHHHH--HHHHHH-TTEEEEEEECHHH-H------HH---T---T-CCCHHHHHH---
T ss_pred CCCEEEEcc-CCCCCcchhh-HHHHHH--HHHHHH-CCCCEEEEEecce-E------ec---C---C-CCCHHHHHH---
Confidence 344444441 1268999999 666654 545555 4888877764221 1 11 1 1 124555532
Q ss_pred HHHHHHHHHHHHHHHHcCC
Q 003799 230 KFAKATVKAQMASFKRYGV 248 (794)
Q Consensus 230 ~~a~~~~~~~~~~~~~lGi 248 (794)
+...+.+++..+|+
T Consensus 85 -----~~~~~~~~~~a~G~ 98 (314)
T 2zp1_A 85 -----IGDYNKKVFEAMGL 98 (314)
T ss_dssp -----HHHHHHHHHHHTTC
T ss_pred -----HHHHHHHHHHhcCC
Confidence 33446777889998
No 60
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A*
Probab=80.21 E-value=3 Score=45.36 Aligned_cols=39 Identities=13% Similarity=0.124 Sum_probs=25.6
Q ss_pred EEEEcCCCCCCCcccchHHHhHHHHHHHHHHHHhCCCeeEEecc
Q 003799 152 FVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPG 195 (794)
Q Consensus 152 f~i~~~pPy~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G 195 (794)
..+.+|.- |+|.|||||.++.+. ..++++ .|+++.+..|
T Consensus 36 ~~vy~G~~-PTG~lHlG~~~~~l~---~~~~~q-~g~~~i~~I~ 74 (372)
T 1n3l_A 36 LKIYWGTA-TTGKPHVAYFVPMSK---IADFLK-AGCEVTILFA 74 (372)
T ss_dssp CEEEEEEC-CSSCCBGGGHHHHHH---HHHHHH-TTCEEEEEEC
T ss_pred CEEEeCcC-CCCcccHHHHHHHHH---HHHHHH-CCCCEEEEEc
Confidence 34455544 789999999876554 334454 6888776664
No 61
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii}
Probab=77.69 E-value=3.5 Score=44.87 Aligned_cols=69 Identities=20% Similarity=0.181 Sum_probs=38.8
Q ss_pred CCCcccchHHHhHHHHHHHHHHHHhCCCeeEEeccccCCCchHHHHHHhhchhhhhcCCCHHHHHHHHHHHH-HHHHHHH
Q 003799 161 ANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKAAKFA-KATVKAQ 239 (794)
Q Consensus 161 ~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G~D~hGlpie~~~~k~~~~~~~~~~~~~~~~~~~~~~a-~~~~~~~ 239 (794)
|+|.|||||.+..+.. +.++|. .|+++.+..|=. |++ . +. ..+.++++++ +.+ ......+
T Consensus 42 PTg~lHlG~yl~~l~~--~~~lQ~-~G~~~~~~iaD~-ha~------~---~~--~~g~~~e~i~----~~~~~~~~~~~ 102 (375)
T 2cyc_A 42 ISGYIHLGTGLMAGAK--IADFQK-AGIKTRVFLADW-HSW------I---ND--KLGGDLEVIQ----EVALKYFKVGM 102 (375)
T ss_dssp CCSCCBHHHHHHHHHH--HHHHHH-TTCBCEEEECHH-HHH------H---TT--GGGGCHHHHH----HHHHHTHHHHH
T ss_pred CCCCcCchHHHHHHHH--HHHHHH-CCCcEEEEecCc-EEE------c---CC--CCCCCHHHHH----HHHHHHHHHHH
Confidence 5689999996665543 446665 488877666421 111 1 11 1123465653 334 3333334
Q ss_pred HHHHHHcCC
Q 003799 240 MASFKRYGV 248 (794)
Q Consensus 240 ~~~~~~lGi 248 (794)
..++..+|+
T Consensus 103 ~~~~la~G~ 111 (375)
T 2cyc_A 103 EKSIEVMGG 111 (375)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHHhCC
Confidence 477889998
No 62
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae}
Probab=75.74 E-value=2 Score=46.34 Aligned_cols=65 Identities=18% Similarity=0.316 Sum_probs=38.4
Q ss_pred CCCcccchHHHhHHHHHHHHHHHHhCCCeeEEeccccCCCchHHHHHHhhchhhhhcCCCHHHHHHHHHHHHHHHHHHHH
Q 003799 161 ANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKAAKFAKATVKAQM 240 (794)
Q Consensus 161 ~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G~D~hGlpie~~~~k~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 240 (794)
|+|.|||||.++.+.+ +.++|. |+++.+..| |-|++ ....+|+++++.+ ....
T Consensus 13 PTG~lHLGn~vg~l~~--~~~lQ~--~~~~~~~Ia-D~ha~--------------~~~~d~~~i~~~~--------~~~~ 65 (348)
T 2yy5_A 13 ASGKQHLGNYLGVMQS--LIELQE--QCQLFVFVA-DLHSI--------------TVDFQPQALKQNN--------FDLV 65 (348)
T ss_dssp CCTTCBHHHHHHTGGG--HHHHHH--HSEEEEEEC-HHHHT--------------TSCCCHHHHHHHH--------HHHH
T ss_pred CCCcccHHHHHHHHHH--HHHHHh--CCcEEEEEc-Chhhc--------------cCCCCHHHHHHHH--------HHHH
Confidence 4599999999877633 335665 788766653 22221 0114676664432 2345
Q ss_pred HHHHHcCCccCCCC
Q 003799 241 ASFKRYGVWADWNN 254 (794)
Q Consensus 241 ~~~~~lGi~~dwd~ 254 (794)
+++...|+ |.+.
T Consensus 66 ~~~lA~Gl--dp~k 77 (348)
T 2yy5_A 66 RTLLAVGL--DPQK 77 (348)
T ss_dssp HHHHHTTC--CTTT
T ss_pred HHHHHhCC--ChhH
Confidence 56668899 7664
No 63
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus}
Probab=75.68 E-value=4.7 Score=43.22 Aligned_cols=69 Identities=19% Similarity=0.184 Sum_probs=38.8
Q ss_pred CCCcccchHHHhHHHHHHHHHHHHhCC-CeeEEeccccCCCchHHHHHHhhchhhhhcCCCHHHHHHHHHHHHHHHHHHH
Q 003799 161 ANGNLHMGHALNKILKDIINRYKLLQN-YKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKAAKFAKATVKAQ 239 (794)
Q Consensus 161 ~nG~lHiGHa~~~il~Dii~R~~r~~G-~~V~~~~G~D~hGlpie~~~~k~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 239 (794)
|+|.|||||....+.+ +.++|.. | +++.+..| |-|++- +. . +.+++++++.+ ...
T Consensus 10 PTg~lHlGh~~g~l~~--~~~lQ~~-G~~~~~~~Ia-D~~a~~---------~~--~-~~~~~~i~~~~--------~~~ 65 (337)
T 2el7_A 10 PSGEIHIGNYLGAIKQ--WVAIGEK-LGRDAFFCIV-DYHALT---------NP--L-AYDPSTLAQRT--------FEA 65 (337)
T ss_dssp SCSCCBHHHHHTHHHH--HHHHHHH-HGGGEEEEEC-GGGGGG---------ST--T-TSCHHHHHHHH--------HHH
T ss_pred CCCcccHHHHHHHHHH--HHHHHhc-CCCCEEEEEe-Cceeec---------CC--C-CCCHHHHHHHH--------HHH
Confidence 5688999999877522 3456654 5 77766554 223321 00 0 24566654333 233
Q ss_pred HHHHHHcCCccCCCCc
Q 003799 240 MASFKRYGVWADWNNP 255 (794)
Q Consensus 240 ~~~~~~lGi~~dwd~~ 255 (794)
..++..+|+ |.+..
T Consensus 66 ~~~~la~Gl--dp~k~ 79 (337)
T 2el7_A 66 ALVNIAAGL--DPEKV 79 (337)
T ss_dssp HHHHHHHTC--CTTTS
T ss_pred HHHHHHhCC--Chhhe
Confidence 456667998 76543
No 64
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica}
Probab=75.22 E-value=6.2 Score=43.06 Aligned_cols=74 Identities=14% Similarity=0.089 Sum_probs=44.5
Q ss_pred CCcEEEEcCCCCCCCcccchHHHhHHHHHHHHHHHHhCCCeeEEeccccCCCchHHHHHHhhchhhhhcCCCHHHHHHHH
Q 003799 149 GENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKA 228 (794)
Q Consensus 149 ~~~f~i~~~pPy~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G~D~hGlpie~~~~k~~~~~~~~~~~~~~~~~~~ 228 (794)
+++|.+.+|. -|+|.|||||.... .+..++|...|..|.++.|-++ +.. .+. .+++++++.
T Consensus 80 ~~~~~vysG~-~PTG~lHLGh~v~~---~~~~~lQ~~~g~~v~i~I~D~~-------a~~------~r~-~~~e~i~~~- 140 (386)
T 3hzr_A 80 KKPTFIFIQK-YPQKEVALEEYITL---EFARYLQDAFNIQVIIQILDDI-------KVL------NRE-ATINEASKM- 140 (386)
T ss_dssp TCCEEEEEEE-CCCSSCBGGGHHHH---HHHHHHHHHHCCEEEEEECHHH-------HHH------TTS-CCHHHHHHH-
T ss_pred CCCeEEEecc-CCCCCccHHHHHHH---HHHHHHHHhcCCeEEEEeCchH-------Hhh------cCC-CCHHHHHHH-
Confidence 4567777663 46788999997765 2233456666888877743221 111 123 678777443
Q ss_pred HHHHHHHHHHHHHHHHHcCC
Q 003799 229 AKFAKATVKAQMASFKRYGV 248 (794)
Q Consensus 229 ~~~a~~~~~~~~~~~~~lGi 248 (794)
+. .+.+++..+|+
T Consensus 141 ---~~----~~~~~~lA~Gl 153 (386)
T 3hzr_A 141 ---SN----DLMKYILAFGF 153 (386)
T ss_dssp ---HH----HHHHHHHHTCC
T ss_pred ---HH----HHHHHHHHcCC
Confidence 33 34556778898
No 65
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Probab=74.43 E-value=3.5 Score=44.51 Aligned_cols=66 Identities=20% Similarity=0.280 Sum_probs=37.2
Q ss_pred CCcccchHHHhHHHHHHHHHHHHhCCCeeEEeccccCCCchHHHHHHhhchhhhhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 003799 162 NGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKAAKFAKATVKAQMA 241 (794)
Q Consensus 162 nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G~D~hGlpie~~~~k~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 241 (794)
+|.|||||.++.+.+ +.++|. .+++.++-| |-|++- ....+++++++.++ .+..
T Consensus 32 TG~lHLGn~~g~l~~--~~~lQ~--~~~~~~~Ia-D~ha~~-------------~~~~~~e~i~~~~~--------~~~~ 85 (351)
T 1yi8_B 32 TGALHLGHLAGSLQN--RVRLQD--EAELFVLLA-DVQALT-------------DHFDRPEQVRENVL--------AVAL 85 (351)
T ss_dssp SSCCBHHHHHHTHHH--HHHHTS--SSEEEEEEC-HHHHHH-------------HHTTCHHHHHHHHH--------HHHH
T ss_pred CCCccHHHHHHHHHH--HHHHHH--hCCeEEEEe-cchhhc-------------CCCCCHHHHHHHHH--------HHHH
Confidence 799999999876421 223443 377766553 222221 01246766644332 2355
Q ss_pred HHHHcCCccCCCCc
Q 003799 242 SFKRYGVWADWNNP 255 (794)
Q Consensus 242 ~~~~lGi~~dwd~~ 255 (794)
++..+|+ |.+..
T Consensus 86 ~~la~Gl--dp~k~ 97 (351)
T 1yi8_B 86 DYLAAGL--DPQKT 97 (351)
T ss_dssp HHHHHTC--CTTTE
T ss_pred HHHHhCC--Chhhc
Confidence 6778999 77643
No 66
>3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A*
Probab=72.37 E-value=7.2 Score=42.37 Aligned_cols=42 Identities=26% Similarity=0.412 Sum_probs=27.7
Q ss_pred CCcEEEEcCCCCCCCcccchHHHhHHHHHHHHHHHHhCCCeeEEecc
Q 003799 149 GENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPG 195 (794)
Q Consensus 149 ~~~f~i~~~pPy~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G 195 (794)
+++|.+.+|. -|+|.|||||... +++ .++..-.|++|.+..+
T Consensus 68 gk~~~v~sG~-~PTG~lHLGhyv~-~~~---~~~lq~~~~~~~~~Ia 109 (372)
T 3a04_A 68 GERVAVLTGF-MPSGKFHFGHKLT-VDQ---LIYLQKNGFKVFVAIA 109 (372)
T ss_dssp TCCCEEEEEE-CCCSCCBHHHHHH-HHH---HHHHHHTTCEEEEEEC
T ss_pred CCCCEEEeCc-CCCcHhHHHHHHH-HHH---HHHHHhCCCeEEEEEe
Confidence 4566666663 4589999999873 222 2344446999987764
No 67
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis}
Probab=71.71 E-value=2.6 Score=46.07 Aligned_cols=71 Identities=15% Similarity=0.285 Sum_probs=41.1
Q ss_pred EEcCCCCCCCcccchHHHhHHHHHHHHHHHHhCCCeeEEeccccCCCchHHHHHHhhchhhhhcCCCHHHHHHHHHHHHH
Q 003799 154 LHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKAAKFAK 233 (794)
Q Consensus 154 i~~~pPy~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G~D~hGlpie~~~~k~~~~~~~~~~~~~~~~~~~~~~a~ 233 (794)
+.+|. -|+|.|||||..+.+.+ +.++| .|++|.+..+ |-|++- ...+++++++.++
T Consensus 38 i~sG~-~PTG~lHLGhyvGal~~--~~~LQ--~~~~~~~~Ia-D~hAlt--------------~~~~~~~lr~~~~---- 93 (388)
T 3prh_A 38 IFSGI-QPSGSVTLGNYIGAMKQ--FVELQ--HDYNSYFCIV-DQHAIT--------------VPQDRLELRKNIR---- 93 (388)
T ss_dssp EEEEE-CCCSCCBHHHHHHTHHH--HHHTT--TTSEEEEEEC-HHHHTT--------------SCCCHHHHHHHHH----
T ss_pred EEEee-CCCCcchHHHHHHHHHH--HHHHH--ccCcEEEEEe-cceeee--------------cCCCHHHHHHHHH----
Confidence 45542 46799999998776542 22333 3999877664 433221 1236666644433
Q ss_pred HHHHHHHHHHHHcCCccCCCC
Q 003799 234 ATVKAQMASFKRYGVWADWNN 254 (794)
Q Consensus 234 ~~~~~~~~~~~~lGi~~dwd~ 254 (794)
....++...|+ |=++
T Consensus 94 ----~~aa~~lA~Gl--Dp~k 108 (388)
T 3prh_A 94 ----NLAALYLAVGL--DPEK 108 (388)
T ss_dssp ----HHHHHHHHTTC--CTTT
T ss_pred ----HHHHHHHHhCC--ChhH
Confidence 34556667999 5444
No 68
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}
Probab=69.77 E-value=2.7 Score=45.23 Aligned_cols=65 Identities=22% Similarity=0.354 Sum_probs=38.0
Q ss_pred CCCcccchHHHhHHHHHHHHHHHHhCCCeeEEeccccCCCchHHHHHHhhchhhhhcCCCHHHHHHHHHHHHHHHHHHHH
Q 003799 161 ANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKAAKFAKATVKAQM 240 (794)
Q Consensus 161 ~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G~D~hGlpie~~~~k~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 240 (794)
|+|.|||||..+.+-+ +.++|. |+++.+..+ |-|++- ...+++++++.++ ...
T Consensus 15 PTG~lHLGhy~g~l~~--~~~lQ~--~~~~~~~ia-D~ha~~--------------~~~~~~~~~~~~~--------~~~ 67 (341)
T 3sz3_A 15 PSGELSIGNYLGALRQ--WQQMQD--DYDCQYCVV-DLHAIT--------------VRQDPQALHEATL--------DAL 67 (341)
T ss_dssp SSSCCBHHHHHHTGGG--HHHHHH--HSEEEEEEC-HHHHTT--------------SCCCHHHHHHHHH--------HHH
T ss_pred CCCcccHHHHHHHHHH--HHHHHh--cCeEEEEEe-cceeEc--------------CCCCHHHHHHHHH--------HHH
Confidence 5699999998876522 335555 588777654 333221 0236666644433 345
Q ss_pred HHHHHcCCccCCCC
Q 003799 241 ASFKRYGVWADWNN 254 (794)
Q Consensus 241 ~~~~~lGi~~dwd~ 254 (794)
.++...|+ |=++
T Consensus 68 ~~~lA~Gl--Dp~k 79 (341)
T 3sz3_A 68 AICLAVGV--DPKK 79 (341)
T ss_dssp HHHHHTTC--CTTT
T ss_pred HHHHHcCC--Chhh
Confidence 56668899 5444
No 69
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}
Probab=69.47 E-value=3.3 Score=44.63 Aligned_cols=42 Identities=17% Similarity=0.201 Sum_probs=26.1
Q ss_pred CcEEEEcCCCCCCCcccchHHHhHHHHHHHHHHHHhCCCeeEEecc
Q 003799 150 ENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPG 195 (794)
Q Consensus 150 ~~f~i~~~pPy~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G 195 (794)
+++.+.+|. -|+|.|||||.+..+.. +.++|+. |+++.+..|
T Consensus 39 ~~~~vy~G~-~PTg~lHlGhyl~~l~~--~~~lQ~~-G~~~~~~i~ 80 (348)
T 2j5b_A 39 RIFTAYNGF-EPSGRIHIAQALITVMN--TNNMIEC-GGQMIIYIA 80 (348)
T ss_dssp CCEEEEEEE-CCCSSCBHHHHHHHHHH--HHHHHHT-TEEEEEEEC
T ss_pred CCCEEEecc-CCCCCCchhHHHHHHHH--HHHHHHc-CCcEEEEec
Confidence 344555553 34599999995544433 5466654 888776664
No 70
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0
Probab=68.02 E-value=15 Score=40.06 Aligned_cols=80 Identities=23% Similarity=0.183 Sum_probs=46.3
Q ss_pred CCcEEEEcCCCCCC-CcccchHHHhHHHHHHHHHHHHhCCCeeEEeccccCCCchHHHHHHhhchhhhhcCCCHHHHHHH
Q 003799 149 GENFVLHDGPPYAN-GNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAK 227 (794)
Q Consensus 149 ~~~f~i~~~pPy~n-G~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G~D~hGlpie~~~~k~~~~~~~~~~~~~~~~~~ 227 (794)
+++|.+.+|. -|+ |.|||||..... .+.++|+..|..|.+..|=++ +.. ++...+++++++.
T Consensus 72 g~~~~vy~G~-~PTa~~lHlGh~v~~~---~~~~lQ~~~~~~v~i~I~D~~-------~~~------~r~~~~~e~i~~~ 134 (393)
T 3hv0_A 72 GELFYLYTGR-GPSSESLHVGHLVPFL---FTKYLQDTFKVPLVIQLTDDE-------KFI------FKSNLTLEETHNY 134 (393)
T ss_dssp TCCCEEEEEE-CCSSSSCBSTTHHHHH---HHHHHHHHHCCCEEEEECHHH-------HHH------HCTTCCHHHHHHH
T ss_pred CCCeEEEeCC-CCCCCCccHHHHHHHH---HHHHHHHhcCCCeEeeccChH-------HHh------hccCCCHHHHHHH
Confidence 3456666653 345 789999966544 344577777888777554221 111 1335677777443
Q ss_pred HHHHHHHHHHHHHHHHHHcCCccCCCCc
Q 003799 228 AAKFAKATVKAQMASFKRYGVWADWNNP 255 (794)
Q Consensus 228 ~~~~a~~~~~~~~~~~~~lGi~~dwd~~ 255 (794)
+.+ +.+++..+|+ |-++.
T Consensus 135 ----~~~----~~~~~lA~Gl--Dp~kt 152 (393)
T 3hv0_A 135 ----AYE----NMKDIIACGF--DPELT 152 (393)
T ss_dssp ----HHH----HHHHHHTTCC--CTTTE
T ss_pred ----HHH----HHHHHHHcCC--CCcce
Confidence 333 3456667888 54443
No 71
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=67.83 E-value=3.9 Score=45.23 Aligned_cols=69 Identities=16% Similarity=0.245 Sum_probs=37.4
Q ss_pred CCCc-ccchHHHhHHHHHHHHHHHHhCCCeeEEeccccCCCchHHHHHHhhchhhhhcCCCHHHHHHHHHHHHHHHHHHH
Q 003799 161 ANGN-LHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKAAKFAKATVKAQ 239 (794)
Q Consensus 161 ~nG~-lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G~D~hGlpie~~~~k~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 239 (794)
|+|+ |||||.. .+. .+.++|. .||++.++.| |-||+-. ....+..++.-++++++++ +...+
T Consensus 41 PTg~sLHlGh~v-~l~--~~~~lQ~-~G~~~~~lIg-d~ta~ig----dp~gk~~~R~~l~~e~i~~--------n~~~~ 103 (420)
T 1jil_A 41 PTADSLHIGHLL-PFL--TLRRFQE-HGHRPIVLIG-GGTGMIG----DPSGKSEERVLQTEEQVDK--------NIEGI 103 (420)
T ss_dssp CSSSSCBHHHHH-HHH--HHHHHHH-TTCEEEEEEC-TTGGGTC----CCTTCSSCCCCCCHHHHHH--------HHHHH
T ss_pred CCCCCccHHHHH-HHH--HHHHHHH-CCCcEEEEEc-CceeEec----CCCccccccccCCHHHHHH--------HHHHH
Confidence 5688 9999977 333 2446665 5898877765 2333210 0011122344567877743 23344
Q ss_pred HHHHHHc
Q 003799 240 MASFKRY 246 (794)
Q Consensus 240 ~~~~~~l 246 (794)
++++.++
T Consensus 104 ~~~~~~~ 110 (420)
T 1jil_A 104 SKQMHNI 110 (420)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555555
No 72
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=65.93 E-value=6.6 Score=46.21 Aligned_cols=46 Identities=20% Similarity=0.327 Sum_probs=27.9
Q ss_pred CcEEEEcCCCCCCCcccchHHHhHHHHHH-HHHHHHhCCCeeEEeccccCCCc
Q 003799 150 ENFVLHDGPPYANGNLHMGHALNKILKDI-INRYKLLQNYKVRYVPGWDCHGL 201 (794)
Q Consensus 150 ~~f~i~~~pPy~nG~lHiGHa~~~il~Di-i~R~~r~~G~~V~~~~G~D~hGl 201 (794)
+++.+.+|. -|+|.||||| .++.-+ +.++|. .|++|.+.-| |-|++
T Consensus 39 ~~~~vy~G~-~PTg~lHLG~---~v~~~~~~~~lQ~-~G~~~~~lIa-D~ha~ 85 (690)
T 3p0j_A 39 PLIRCYDGF-EPSGRMHIAQ---GIFKAVNVNKCTA-AGCEFVFWVA-DWFAL 85 (690)
T ss_dssp TTEEEEEEE-CCCSCCBHHH---HHHHHHHHHHHHH-TTEEEEEEEC-CGGGG
T ss_pred CCceEEeee-cCCCcchhHh---hHHHHHHHHHHHH-CCCcEEEEEe-eeEEE
Confidence 345555542 3567999999 333322 445555 4888877766 55654
No 73
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1
Probab=64.08 E-value=4 Score=43.94 Aligned_cols=66 Identities=20% Similarity=0.387 Sum_probs=36.9
Q ss_pred CCCCcccchHHHhHHHHHHHHHHHHhCCCeeEEeccccCCCchHHHHHHhhchhhhhcCCCHHHHHHHHHHHHHHHHHHH
Q 003799 160 YANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKAAKFAKATVKAQ 239 (794)
Q Consensus 160 y~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G~D~hGlpie~~~~k~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 239 (794)
-|+|.|||||..+.+-+ +.++| .++++.+..+ |-|.+- ...+|+++++.++ ..
T Consensus 23 ~PTG~lHLGh~vg~l~~--~~~lQ--~~~~~~~~ia-D~hA~t--------------~~~~~~~~~~~~~--------~~ 75 (346)
T 3n9i_A 23 QPSGELTIGNYMGALRQ--WVQMQ--DDYDCIYCIV-DLHAIT--------------ARQDPALLRKRTL--------DT 75 (346)
T ss_dssp CSCSCCBHHHHHHTHHH--HHTTT--TTSEEEEEEC-HHHHTT--------------SCCCHHHHHHHHH--------HH
T ss_pred CCCCcccHHHHHHHHHH--HHHHH--hhCcEEEEEe-cceeec--------------CCCCHHHHHHHHH--------HH
Confidence 35699999998776521 12233 3788776654 333221 1235666644433 34
Q ss_pred HHHHHHcCCccCCCC
Q 003799 240 MASFKRYGVWADWNN 254 (794)
Q Consensus 240 ~~~~~~lGi~~dwd~ 254 (794)
..++...|+ |=++
T Consensus 76 ~~~~lA~Gl--Dp~k 88 (346)
T 3n9i_A 76 LALYLACGI--DPKK 88 (346)
T ss_dssp HHHHHHHTC--CTTT
T ss_pred HHHHHHcCC--Cccc
Confidence 555667899 5444
No 74
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=63.40 E-value=3 Score=50.51 Aligned_cols=62 Identities=10% Similarity=0.190 Sum_probs=34.1
Q ss_pred cchHHHHHHHHhcCCccccccc--------------ccccccccCCCCcEEEcccCccccchhhHHHHHHhhhcCe
Q 003799 505 DGNVAVVKYLDEQMSLIMEEPY--------------EHKYPYDWRTKKPTIFRATEQWFASVEGFRQAAMDAIGQV 566 (794)
Q Consensus 505 ea~~~ii~~L~~~g~l~~~~~~--------------~h~yp~~WRt~~pii~r~t~QWfi~~~~~~~~~l~~i~~v 566 (794)
+.-..++..|.++|++...+.. .-..+.||||+.|++++-.+|||+++..+++..++.++..
T Consensus 154 ~~v~~~f~~L~ekGliY~~~~~v~wcp~~~t~La~~ev~~g~~~~~g~~ve~~~~~~~f~~i~~y~~~Ll~~l~~~ 229 (880)
T 4arc_A 154 RWEQKFFTELYKKGLVYKKTSAVNWCPNDQTVLANEQVIDGCCWRCDTKVERKEIPQWFIKITAYADELLNDLDKL 229 (880)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECC------------------------------CEEEEEECGGGGHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHCCCEEEeceeEeecCCcCCEecchhhhcCcCcCCCCccEEEEccceEEeechhHHHHHHHHhhc
Confidence 3445677888888877654322 1124679999999999999999999999999888887643
No 75
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A
Probab=62.23 E-value=5.1 Score=43.84 Aligned_cols=31 Identities=29% Similarity=0.442 Sum_probs=21.8
Q ss_pred CCCc-ccchHHHhHHHHHHHHHHHHhCCCeeEEecc
Q 003799 161 ANGN-LHMGHALNKILKDIINRYKLLQNYKVRYVPG 195 (794)
Q Consensus 161 ~nG~-lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G 195 (794)
|+|+ |||||.. .+.. +.++|.. ||++.++.|
T Consensus 73 PTg~sLHlGhlv-~l~~--l~~lQ~~-G~~~~~lIg 104 (392)
T 1y42_X 73 PTAPSLHVGHLL-PLMP--LFWMYLE-GYKAFTLIG 104 (392)
T ss_dssp CCSSSCBGGGHH-HHHH--HHHHHHH-TCEEEEEEC
T ss_pred CCCCCccHHHHH-HHHH--HHHHHHc-CCcEEEEEc
Confidence 5688 9999987 3333 5466654 898877765
No 76
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima}
Probab=62.05 E-value=5.4 Score=42.81 Aligned_cols=38 Identities=21% Similarity=0.352 Sum_probs=24.4
Q ss_pred EEEEcCCCCCCCcccchHHHhHHHHHHHHHHHHhCCCeeEEec
Q 003799 152 FVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVP 194 (794)
Q Consensus 152 f~i~~~pPy~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~ 194 (794)
.++.-..| +|.|||||.++.+. -+.++|. .|+++.++-
T Consensus 14 ~v~~G~~P--TG~lHLGn~~g~l~--~~~~lQ~-~G~~~~~~I 51 (340)
T 2g36_A 14 RILSGMRP--TGKLHIGHLVGALE--NWVKLQE-EGNECFYFV 51 (340)
T ss_dssp EEEEEECC--CSSCBHHHHHTHHH--HHHHHHH-TTCEEEEEE
T ss_pred eEEEeeCC--CCcccHHhHHHHHH--HHHHHHH-CCCCEEEEE
Confidence 34343344 47999999988542 2334443 589887776
No 77
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Probab=60.11 E-value=5.9 Score=42.16 Aligned_cols=31 Identities=26% Similarity=0.535 Sum_probs=21.0
Q ss_pred CCCc-ccchHHHhHHHHHHHHHHHHhCCCeeEEecc
Q 003799 161 ANGN-LHMGHALNKILKDIINRYKLLQNYKVRYVPG 195 (794)
Q Consensus 161 ~nG~-lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G 195 (794)
|+|. |||||.. .+. .+.++|. .|+++.++.|
T Consensus 42 PTg~slHlGh~l-~l~--~~~~lQ~-~g~~~~~~i~ 73 (322)
T 2yxn_A 42 PTADSLHLGHLV-PLL--CLKRFQQ-AGHKPVALVG 73 (322)
T ss_dssp CSSSSCBHHHHH-HHH--HHHHHHH-TTCEEEEEEC
T ss_pred CCCCcccHHHHH-HHH--HHHHHHH-cCCcEEEEEc
Confidence 5688 9999977 332 2445554 4888877765
No 78
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=59.50 E-value=5.7 Score=43.84 Aligned_cols=31 Identities=26% Similarity=0.507 Sum_probs=21.4
Q ss_pred CCCc-ccchHHHhHHHHHHHHHHHHhCCCeeEEecc
Q 003799 161 ANGN-LHMGHALNKILKDIINRYKLLQNYKVRYVPG 195 (794)
Q Consensus 161 ~nG~-lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G 195 (794)
|+|+ |||||.. .+. .+.++|. .||++.++.|
T Consensus 39 PTg~sLHlGh~v-~l~--~l~~lQ~-~G~~~i~lIg 70 (419)
T 2ts1_A 39 PTADSLHIGHLA-TIL--TMRRFQQ-AGHRPIALVG 70 (419)
T ss_dssp CSSSSCBGGGHH-HHH--HHHHHHH-TTCEEEEEEC
T ss_pred CCCCCccHHHHH-HHH--HHHHHHH-CCCcEEEEEc
Confidence 5688 9999977 333 2446654 5898877765
No 79
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=59.45 E-value=11 Score=41.69 Aligned_cols=46 Identities=24% Similarity=0.449 Sum_probs=26.3
Q ss_pred CcEEEEcCCCCCCC-cccchHHHhHHHHHHHHHHHHhCCCeeEEeccccCCCc
Q 003799 150 ENFVLHDGPPYANG-NLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGL 201 (794)
Q Consensus 150 ~~f~i~~~pPy~nG-~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G~D~hGl 201 (794)
+++.+..|. -|+| .|||||.. .+. .+.++|. .||++.++.| |-||+
T Consensus 36 ~~~~vy~G~-dPTg~sLHlGh~v-~l~--~l~~lQ~-~G~~~i~lIg-D~ta~ 82 (432)
T 1h3f_A 36 RPLTVKLGA-DPTRPDLHLGHAV-VLR--KMRQFQE-LGHKVVLIIG-DFTGM 82 (432)
T ss_dssp SCCEEEEEE-CTTCCSCBHHHHH-HHH--HHHHHHH-TTCEEEEEEC-CCC--
T ss_pred CCcEEEEcc-cCCCCCCchhhHH-HHH--HHHHHHH-CCCCEEEEEc-cceEE
Confidence 344444442 2566 59999987 332 2546665 4898877765 34443
No 80
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Probab=57.19 E-value=24 Score=39.05 Aligned_cols=43 Identities=19% Similarity=0.227 Sum_probs=28.5
Q ss_pred CCcEEEEcCCCCCC-CcccchHHHhHHHHHHHHHHHHhCCCeeEEecc
Q 003799 149 GENFVLHDGPPYAN-GNLHMGHALNKILKDIINRYKLLQNYKVRYVPG 195 (794)
Q Consensus 149 ~~~f~i~~~pPy~n-G~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G 195 (794)
++++.+..|.= |+ |.|||||....+. ..++|...|+++.+..|
T Consensus 106 ~~~~~vy~G~d-PTag~LHLGh~v~~~~---~~~lQ~~~G~~~iilIg 149 (437)
T 1r6u_A 106 KKPFYLYTGRG-PSSEAMHVGHLIPFIF---TKWLQDVFNVPLVIQMT 149 (437)
T ss_dssp TCCEEEEEEEC-CCSSCCBHHHHHHHHH---HHHHHHHHTCCEEEEEC
T ss_pred CCCcEEEEccc-CCCCCccHHHHHHHHH---HHHHHHHhCCcEEEEEe
Confidence 45677777643 45 8999999986542 33455546888766654
No 81
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=56.38 E-value=6.9 Score=43.34 Aligned_cols=31 Identities=26% Similarity=0.503 Sum_probs=21.6
Q ss_pred CCCc-ccchHHHhHHHHHHHHHHHHhCCCeeEEecc
Q 003799 161 ANGN-LHMGHALNKILKDIINRYKLLQNYKVRYVPG 195 (794)
Q Consensus 161 ~nG~-lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G 195 (794)
|+|+ ||||| +..+.. +.++|. .||++.++.|
T Consensus 41 PTg~sLHLGh-lv~l~~--l~~lQ~-~G~~~i~lIg 72 (432)
T 2jan_A 41 PTAPSLHAGH-LVPLLT--LRRFQR-AGHRPIVLAG 72 (432)
T ss_dssp CSSSSCBGGG-HHHHHH--HHHHHH-TTCEEEEEEC
T ss_pred CCCCCcCHHH-HHHHHH--HHHHHH-CCCcEEEEEc
Confidence 5685 99999 444443 556665 4899887764
No 82
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A
Probab=53.72 E-value=27 Score=39.11 Aligned_cols=43 Identities=19% Similarity=0.227 Sum_probs=28.5
Q ss_pred CCcEEEEcCCCCCC-CcccchHHHhHHHHHHHHHHHHhCCCeeEEecc
Q 003799 149 GENFVLHDGPPYAN-GNLHMGHALNKILKDIINRYKLLQNYKVRYVPG 195 (794)
Q Consensus 149 ~~~f~i~~~pPy~n-G~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G 195 (794)
+++|.+..|.= |+ |.|||||....++ ..++|...|+++.+..|
T Consensus 153 ~~~~~vy~G~d-PTag~LHLGh~v~~~~---~~~lQ~~~g~~~iilI~ 196 (477)
T 1r6t_A 153 KKPFYLYTGRG-PSSEAMHVGHLIPFIF---TKWLQDVFNVPLVIQMT 196 (477)
T ss_dssp TCCEEEEEEEC-CCTTCCBGGGHHHHHH---HHHHHHHHTCCEEEEEC
T ss_pred CCCcEEEEccc-CCCCCccHHHHHHHHH---HHHHHHHhCCcEEEEEe
Confidence 45677777643 45 8999999987552 33455546888766654
No 83
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0
Probab=53.58 E-value=17 Score=39.78 Aligned_cols=74 Identities=15% Similarity=0.169 Sum_probs=44.7
Q ss_pred CCcEEEEcCCCCCCC-cccchHHHhHHHHHHHHHHHHhCCCeeEEeccccCCCchHHHHHHhhchhhhhcCCCHHHHHHH
Q 003799 149 GENFVLHDGPPYANG-NLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAK 227 (794)
Q Consensus 149 ~~~f~i~~~pPy~nG-~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G~D~hGlpie~~~~k~~~~~~~~~~~~~~~~~~ 227 (794)
++++.+..|. -|+| .|||||.... .++.++|...|..|.++.|=+++ .. ++. .+++++++.
T Consensus 76 ~~~~~vy~G~-~PTg~~lHLGh~v~~---~~~~~lQ~~~~~~v~i~I~D~~~-------~l------~~~-~~~e~i~~~ 137 (395)
T 3i05_A 76 GQPFYLYTGR-GPSSESMHMGHLIPF---MFTKWLQDSFRVPLVIQMTDDEK-------FY------FRN-IPMEQVEAM 137 (395)
T ss_dssp TCCEEEEEEE-CCCSSCCBGGGSHHH---HHHHHHHHHHTCCEEEEECHHHH-------HH------HSC-CCHHHHHHH
T ss_pred CCCeEEEEee-cCCCccchHHHHHHH---HHHHHHHHhcCCcEEEEEcchHH-------Hh------cCC-CCHHHHHHH
Confidence 4567777663 4678 7999997654 33445677668888876543321 11 122 677777443
Q ss_pred HHHHHHHHHHHHHHHHHHcCC
Q 003799 228 AAKFAKATVKAQMASFKRYGV 248 (794)
Q Consensus 228 ~~~~a~~~~~~~~~~~~~lGi 248 (794)
+. .+.+++..+|+
T Consensus 138 ----~~----~~~~~~lA~Gl 150 (395)
T 3i05_A 138 ----TT----ENIKDIIAMGF 150 (395)
T ss_dssp ----HH----HHHHHHHTTTC
T ss_pred ----HH----HHHHHHHHcCC
Confidence 33 34556667887
No 84
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=52.34 E-value=31 Score=38.34 Aligned_cols=76 Identities=20% Similarity=0.245 Sum_probs=44.8
Q ss_pred CCcEEEEcCCCCCCCcccchHHHhHHHHHHHHHHHHhCCCeeEEeccccCCCchHHHHHHhhchhhhhcCCCHHHHHHHH
Q 003799 149 GENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKA 228 (794)
Q Consensus 149 ~~~f~i~~~pPy~nG~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G~D~hGlpie~~~~k~~~~~~~~~~~~~~~~~~~ 228 (794)
+++|.+.+|.=-..|.|||||..... .+.++|...|..|.+..|= | + +.. .+...+++++++.
T Consensus 89 g~p~~vytG~dPTagsLHLGH~v~~~---~l~~lQ~~~g~~v~I~IgD-----~-~-a~~------~r~~lt~E~I~~n- 151 (451)
T 3foc_A 89 GHPIYIYTGRGPSSGALHLGHLLPFI---FTKYLQDAFKCYVVIQITD-----D-E-KFL------RNRSLSYAEVDSY- 151 (451)
T ss_dssp TCCEEEEEEECCCSSCCBHHHHHHHH---HHHHHHHHHTCEEEEEECH-----H-H-HHH------HCTTCCHHHHHHH-
T ss_pred CCCeEEEecCCCCCCCccHHHHHHHH---HHHHHHHccCceEEEEeeC-----c-H-Hhh------cccCCCHHHHHHH-
Confidence 45777777643333899999976544 2344677768888776442 2 1 111 1224677776443
Q ss_pred HHHHHHHHHHHHHHHHHcCC
Q 003799 229 AKFAKATVKAQMASFKRYGV 248 (794)
Q Consensus 229 ~~~a~~~~~~~~~~~~~lGi 248 (794)
+.+ +.+++..+|+
T Consensus 152 ---~~~----~~~~~lA~Gl 164 (451)
T 3foc_A 152 ---TRE----NIKDIIACGF 164 (451)
T ss_dssp ---HHH----HHHHHHTTTC
T ss_pred ---HHH----HHHHHHHcCC
Confidence 333 4556668887
No 85
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum}
Probab=52.15 E-value=10 Score=41.23 Aligned_cols=31 Identities=19% Similarity=0.458 Sum_probs=20.2
Q ss_pred CCCcccchHHHhHHHHHH-HHHHHHhCCCeeEEecc
Q 003799 161 ANGNLHMGHALNKILKDI-INRYKLLQNYKVRYVPG 195 (794)
Q Consensus 161 ~nG~lHiGHa~~~il~Di-i~R~~r~~G~~V~~~~G 195 (794)
|+|.|||||. ++.-+ +.+++. .|++|.++.|
T Consensus 65 PTg~lHlG~g---vl~~~~~~~lQ~-~G~~~~~lIa 96 (373)
T 3vgj_A 65 PSGRMHIAQG---LLKSIIVNKLTS-NGCTFIFWIA 96 (373)
T ss_dssp CCSSCBHHHH---HHHHHHHHHHHT-TTCEEEEEEC
T ss_pred CCCCceehhh---HHHHHHHHHHHH-CCCcEEEEEe
Confidence 4579999992 33332 445554 4898877765
No 86
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi}
Probab=49.02 E-value=25 Score=38.60 Aligned_cols=74 Identities=16% Similarity=0.212 Sum_probs=43.3
Q ss_pred CCcEEEEcCCCCCCC-cccchHHHhHHHHHHHHHHHHhCCCeeEEeccccCCCchHHHHHHhhchhhhhcCCCHHHHHHH
Q 003799 149 GENFVLHDGPPYANG-NLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAK 227 (794)
Q Consensus 149 ~~~f~i~~~pPy~nG-~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G~D~hGlpie~~~~k~~~~~~~~~~~~~~~~~~ 227 (794)
+++|.+..|. -|+| .|||||..... +..++|...|..+.+..| |-| +.. . + ..+++++++.
T Consensus 99 ~~p~~vy~G~-~PTg~~lHLGh~v~~~---~~~~lQ~~~g~~~~i~Ia-D~~------a~l---~---~-~~~~e~i~~~ 160 (406)
T 3tze_A 99 NRPFYLYTGR-GPSSKTMHIGHTIPFL---LCKYMQDAFKIRLVIQIT-DDE------KFL---W---K-SMRLEDAMAY 160 (406)
T ss_dssp TCCEEEEEEE-CCCSSCCBGGGHHHHH---HHHHHHHHHTCCEEEEEC-HHH------HHH---H---S-SCCHHHHHHH
T ss_pred CCCeEEEEee-CCCCCcccHHHHHHHH---HHHHHHHhcCCcEEEEee-ChH------HHc---C---C-CCCHHHHHHH
Confidence 4667777763 4677 79999977642 333466666888777544 222 111 0 1 2577776443
Q ss_pred HHHHHHHHHHHHHHHHHHcCC
Q 003799 228 AAKFAKATVKAQMASFKRYGV 248 (794)
Q Consensus 228 ~~~~a~~~~~~~~~~~~~lGi 248 (794)
+. .+.+++..+|+
T Consensus 161 ----~~----~~~~~~lA~Gl 173 (406)
T 3tze_A 161 ----GR----ENIKDIVTLGF 173 (406)
T ss_dssp ----HH----HHHHHHHTTTC
T ss_pred ----HH----HHHHHHHHcCC
Confidence 33 34556668888
No 87
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=48.80 E-value=11 Score=45.85 Aligned_cols=63 Identities=14% Similarity=0.205 Sum_probs=48.0
Q ss_pred cchHHHHHHHHhcCCccccccc--------------ccccccccC-CCCcEEEcccCccccchhhHHHHHHhhhcCee
Q 003799 505 DGNVAVVKYLDEQMSLIMEEPY--------------EHKYPYDWR-TKKPTIFRATEQWFASVEGFRQAAMDAIGQVK 567 (794)
Q Consensus 505 ea~~~ii~~L~~~g~l~~~~~~--------------~h~yp~~WR-t~~pii~r~t~QWfi~~~~~~~~~l~~i~~v~ 567 (794)
+.-..++..|.++|++...... .-.++.||| |+.|++.+..+|||.++.++++..++.++...
T Consensus 134 ~~v~~~f~~L~~kGliY~~~~~v~w~p~~~t~La~~ev~~g~~~~~~~~~~~~~~~~~~f~~l~~~~~~L~~~l~~~~ 211 (878)
T 2v0c_A 134 RWNQWIFLKMWEKGLAYRAKGLVNWCPKCQTVLANEQVVEGRCWRHEDTPVEKRELEQWYLRITAYAERLLKDLEGLN 211 (878)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGEETTEESSCTTCBCEEEEEEEEEECGGGGHHHHHHTTTTCB
T ss_pred HHHHHHHHHHHHCCCEEEcceeEEEeCCCCCCcCHHHHhcCCCcccCCCceEEEecceeeEecchhHHHHHHHhhhcC
Confidence 3445678888999987653221 123678999 99999999999999999999888887776543
No 88
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A*
Probab=48.36 E-value=10 Score=42.00 Aligned_cols=43 Identities=16% Similarity=0.312 Sum_probs=28.3
Q ss_pred CCcEEEEcCCCCCC-CcccchHHHhHHHHHHHHHHHHhCCCeeEEecc
Q 003799 149 GENFVLHDGPPYAN-GNLHMGHALNKILKDIINRYKLLQNYKVRYVPG 195 (794)
Q Consensus 149 ~~~f~i~~~pPy~n-G~lHiGHa~~~il~Dii~R~~r~~G~~V~~~~G 195 (794)
++++.+..|.= |+ |.|||||....+. +.++|.-.|+++.++.|
T Consensus 100 g~~~~vy~G~d-PTag~LHLGh~v~~~~---l~~lQ~~~g~~~i~lI~ 143 (432)
T 2ip1_A 100 GKPFFLYTGRG-PSSDSMHLGHMIPFVF---TKWLQEVFDVPLVIELT 143 (432)
T ss_dssp TCCCEEEEEEC-CCSSCCBGGGHHHHHH---HHHHHHHHTCCEEEEEC
T ss_pred CCCeEEEEeec-CCCCCccHHHHHHHHH---HHHHHHHcCCeEEEEEe
Confidence 34566666543 45 8999999886542 33566546888777776
No 89
>3kp1_E D-ornithine aminomutase S component; 5 aminomutase (OAM), metal binding protein; HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_E* 3koy_E* 3koz_E* 3kp0_E* 3kox_E*
Probab=46.06 E-value=18 Score=32.44 Aligned_cols=73 Identities=14% Similarity=0.260 Sum_probs=56.8
Q ss_pred hcCCCHHHHHHHHHHHHHHHHHH-------------HHHHHHHcCCccCCCCccccCChHHHHHHHHHHHHHHHcCCeee
Q 003799 216 KKDLTPSKLRAKAAKFAKATVKA-------------QMASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYR 282 (794)
Q Consensus 216 ~~~~~~~~~~~~~~~~a~~~~~~-------------~~~~~~~lGi~~dwd~~~~T~d~~~~~~v~~~f~~L~~kGlIy~ 282 (794)
..+++.+++.+.|+++|++..+. .+..+.+||+ | ..++ ..+...+.++|++-+
T Consensus 14 l~~l~d~el~~rar~LA~kIv~pv~el~~~hTTvSVERtVlr~mGi--d------gvda------~~iVd~~~e~gLLgk 79 (121)
T 3kp1_E 14 LANLSDEELQTRFWEMAEKIVDPLLDLGKKNTTPSIERSVLLRMGF--S------SLEA------KAIVDKTMDRGLMGK 79 (121)
T ss_dssp GTTCCHHHHHHHHHHHHHHHHHHHHHHHHHEECHHHHHHHHHHTTC--C------HHHH------HHHHHHHHHTTCGGG
T ss_pred HHhCCHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHhCC--C------ccch------HHHHHHHHHcccccc
Confidence 46789999999999999887654 4666788888 3 1111 148899999999999
Q ss_pred cccCceeccCCCcccccccc
Q 003799 283 GKKPVHWSPSSRTALAEAEL 302 (794)
Q Consensus 283 ~~~~v~w~~~~~t~Lae~Ev 302 (794)
|-.-+.|-...++.++..|+
T Consensus 80 GAa~~v~~a~~e~g~s~qea 99 (121)
T 3kp1_E 80 GAGHIVYKIAKEKNISVREA 99 (121)
T ss_dssp CHHHHHHHHHHHTTCCHHHH
T ss_pred cHHHHHHHHHHHcCCCHHHH
Confidence 98888888888888887665
No 90
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=46.05 E-value=11 Score=43.31 Aligned_cols=60 Identities=10% Similarity=0.117 Sum_probs=43.0
Q ss_pred cchHHHHHHHHhcCCcccccc---c--------ccc-c--------ccc---cCCCCcEEEcccCccccchhhHHHHHHh
Q 003799 505 DGNVAVVKYLDEQMSLIMEEP---Y--------EHK-Y--------PYD---WRTKKPTIFRATEQWFASVEGFRQAAMD 561 (794)
Q Consensus 505 ea~~~ii~~L~~~g~l~~~~~---~--------~h~-y--------p~~---WRt~~pii~r~t~QWfi~~~~~~~~~l~ 561 (794)
+.-..+++.|.++|.+...+. | .-+ . ..| .+|++|++++.++|||++++.+++.+++
T Consensus 125 ~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~~~~~~~~~g~~c~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~ 204 (564)
T 3kfl_A 125 KLVQDIWKKLAAKGDIYLGKYEGWYSVSDESFLTAQNVADGVDRDGKPCKVSLESGHVVTWVEEENYMFRLSAFRERLLK 204 (564)
T ss_dssp HHHHHHHHHHHHHTCEEEEEEEEEEETTTTEEECGGGEEEEECTTSCEEEEETTTSCBCEEEEEEEEEECGGGGHHHHHH
T ss_pred HHHHHHHHHHHHCCCEEEeeeeEEecCCcCCCCCHHHhccCcCCCCCEeccccCCCCccEEEecceeEEEHHHHHHHHHH
Confidence 445678889999998754321 0 000 0 123 3689999999999999999999998887
Q ss_pred hhc
Q 003799 562 AIG 564 (794)
Q Consensus 562 ~i~ 564 (794)
.++
T Consensus 205 ~~~ 207 (564)
T 3kfl_A 205 YFH 207 (564)
T ss_dssp HHH
T ss_pred HHH
Confidence 775
No 91
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=39.30 E-value=72 Score=37.41 Aligned_cols=66 Identities=15% Similarity=0.068 Sum_probs=39.8
Q ss_pred CCCcccchHHHhHHHHHHHHHHHHh-CCCeeEEeccccCCCchHHHHHHhhchhhhhcCCCHHHHHHHHHHHHHHHHHHH
Q 003799 161 ANGNLHMGHALNKILKDIINRYKLL-QNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKAAKFAKATVKAQ 239 (794)
Q Consensus 161 ~nG~lHiGHa~~~il~Dii~R~~r~-~G~~V~~~~G~D~hGlpie~~~~k~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 239 (794)
++|.+|+||+....- .+..|+++ -|++|.+..|=++ +. ++. ..+.+++++ ++++. ..
T Consensus 390 s~g~lHLGh~v~~~k--~l~~~~~~~~g~~v~ilIaD~~-------A~---i~d--~~g~~~e~i----~~~~~----y~ 447 (690)
T 3p0j_A 390 ALLKVPLDVAEGMIK--VTKDFIAAHPEGTVTLVLPDWS-------AV---ASD--EITGVEKDI----SAALQ----VN 447 (690)
T ss_dssp CCSSCBHHHHHHHHH--HHHHHHHHCSSCEEEEEECTTH-------HH---HTT--CTTCCHHHH----HHHHH----HH
T ss_pred CCCCcccchHHHHHH--HHHHHHHHcCCCeEEEEEecch-------hh---hCC--CCCCCHHHH----HHHHH----HH
Confidence 799999999865332 24466666 4888888876443 11 111 122344444 44443 35
Q ss_pred HHHHHHcCC
Q 003799 240 MASFKRYGV 248 (794)
Q Consensus 240 ~~~~~~lGi 248 (794)
.+.++.+|.
T Consensus 448 ~~~~~alG~ 456 (690)
T 3p0j_A 448 CALLKAYGL 456 (690)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHhcCC
Confidence 677889998
No 92
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=24.42 E-value=63 Score=26.79 Aligned_cols=29 Identities=14% Similarity=0.274 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHcCCeee-cccCceeccCC
Q 003799 265 AAQIEVFGQMSLQGYIYR-GKKPVHWSPSS 293 (794)
Q Consensus 265 ~~v~~~f~~L~~kGlIy~-~~~~v~w~~~~ 293 (794)
..|...+.+|.++|+|.+ +.++..|...+
T Consensus 42 ~tV~~~L~~Le~~G~I~~~g~~~~~W~i~~ 71 (81)
T 1qbj_A 42 KEINRVLYSLAKKGKLQKEAGTPPLWKIAV 71 (81)
T ss_dssp HHHHHHHHHHHHTTSEEEESSSSCEEEEC-
T ss_pred HHHHHHHHHHHHCCCEEecCCCCCeeEEeC
Confidence 568999999999999986 67778887654
Done!