RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 003799
(794 letters)
>gnl|CDD|215452 PLN02843, PLN02843, isoleucyl-tRNA synthetase.
Length = 974
Score = 936 bits (2422), Expect = 0.0
Identities = 351/454 (77%), Positives = 397/454 (87%)
Query: 119 MRANALVREPEIHKLWDDHQVFLRVADKNDGENFVLHDGPPYANGNLHMGHALNKILKDI 178
MRAN++ REPEI KLW+++QV+ RV+D+N+GE+F LHDGPPYANG+LH+GHALNKILKD
Sbjct: 1 MRANSVTREPEIQKLWEENQVYKRVSDRNNGESFTLHDGPPYANGDLHIGHALNKILKDF 60
Query: 179 INRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKAAKFAKATVKA 238
INRY+LLQ KV YVPGWDCHGLPIELKVLQSLD++A+K+LTP KLRAKAAKFAK TV
Sbjct: 61 INRYQLLQGKKVHYVPGWDCHGLPIELKVLQSLDQEARKELTPIKLRAKAAKFAKKTVDT 120
Query: 239 QMASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALA 298
Q SFKRYGVW DW NPYLTLDPEYEAAQIEVFGQM L GYIYRG+KPVHWSPSSRTALA
Sbjct: 121 QRESFKRYGVWGDWENPYLTLDPEYEAAQIEVFGQMFLNGYIYRGRKPVHWSPSSRTALA 180
Query: 299 EAELEYPEGHVSRSIYAVFRMVSAPPSTSGLLNEFLPDLGLAVWTTTPWTVPANAAVAVN 358
EAELEYPEGHVS+SIY F +VS ++ L EFLP L LA+WTTTPWT+PANAAVAVN
Sbjct: 181 EAELEYPEGHVSKSIYVAFPVVSPSETSPEELEEFLPGLSLAIWTTTPWTMPANAAVAVN 240
Query: 359 AKLQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFIIVASDLVPTLEAKWGTKLVI 418
KLQY+VVE+QS E +S + NKK RPGNVLK+Q+K+F+IVA+DLVP LEAKWG KLV+
Sbjct: 241 DKLQYSVVEVQSFSEDESTSGGNKKKRPGNVLKEQQKLFLIVATDLVPALEAKWGVKLVV 300
Query: 419 KKTLAGSDLENCRYVHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGL 478
KT GSDLE CRY+HP+ NR+ PVVIGGDYITTESGTGLVHTAPGHGQEDY+T LKYGL
Sbjct: 301 LKTFPGSDLEGCRYIHPLYNRESPVVIGGDYITTESGTGLVHTAPGHGQEDYITGLKYGL 360
Query: 479 PILSPVDDEGKFTEEAGKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTKK 538
P+LSPVDD GKFTEEAG+FSGL VLG+GN AVV+ LDE SL+MEE Y HKYPYDWRTKK
Sbjct: 361 PLLSPVDDAGKFTEEAGQFSGLSVLGEGNAAVVEALDEAGSLLMEEAYGHKYPYDWRTKK 420
Query: 539 PTIFRATEQWFASVEGFRQAAMDAIGQVKWVPPQ 572
PTIFRATEQWFASVEGFRQAA+DAI +VKW+P Q
Sbjct: 421 PTIFRATEQWFASVEGFRQAALDAIDKVKWIPAQ 454
Score = 398 bits (1025), Expect = e-125
Identities = 154/207 (74%), Positives = 179/207 (86%), Gaps = 3/207 (1%)
Query: 572 QEAPGYGADVLRLWVSSVDYTGDVMIGPQVLRQMSDIYRKLRGTLRYLLGNLHDWRVGNS 631
++ P YGADVLRLWV+SVDYTGDV+IGPQ+L+QMSDIYRKLRGTLRYLLGNLHDW+ N+
Sbjct: 633 KQEPAYGADVLRLWVASVDYTGDVLIGPQILKQMSDIYRKLRGTLRYLLGNLHDWKPDNA 692
Query: 632 ISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRL 691
+ Y+DLP ID+YALFQLEN+V I ESY++YQFFKIFQI+QRF IVDLSNFY DVAKDRL
Sbjct: 693 VPYEDLPSIDKYALFQLENVVNEIEESYDNYQFFKIFQILQRFTIVDLSNFYLDVAKDRL 752
Query: 692 YTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAAEFVFE 751
Y GGTTSFTRRSCQTVL+AHLLS++R IAPILPHLAED WQNLPF EDGSAAE VFE
Sbjct: 753 YVGGTTSFTRRSCQTVLAAHLLSLLRAIAPILPHLAEDAWQNLPFQ---EDGSAAESVFE 809
Query: 752 SKWPVLDEKWRTFPVGEIYFWGKILEV 778
+ WP +E+W +FP ++ FW +LEV
Sbjct: 810 AGWPTPNEEWLSFPAEDVDFWSLLLEV 836
>gnl|CDD|235588 PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewed.
Length = 912
Score = 684 bits (1769), Expect = 0.0
Identities = 218/471 (46%), Positives = 298/471 (63%), Gaps = 39/471 (8%)
Query: 106 YKHTVDLPKTTFGMRANALVREPEIHKLWDDHQVFLRVADKNDG-ENFVLHDGPPYANGN 164
YK T++LPKT F MRAN REPEI K W+++ ++ ++ + N G F+LHDGPPYANG+
Sbjct: 4 YKDTLNLPKTDFPMRANLPKREPEILKRWEENDLYQKIREANKGKPKFILHDGPPYANGD 63
Query: 165 LHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKL 224
+H+GHALNKILKDII + K + + YVPGWDCHGLPIELKV + L + K L+ ++
Sbjct: 64 IHIGHALNKILKDIIVKSKTMSGFDAPYVPGWDCHGLPIELKVEKKLGKK-GKKLSAAEF 122
Query: 225 RAKAAKFAKATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGK 284
R K ++A V Q FKR GV DW+NPYLT+D +YEA I G+M+ +GY+Y+G
Sbjct: 123 RKKCREYALEQVDIQREDFKRLGVLGDWDNPYLTMDFKYEANIIRALGKMAKKGYLYKGL 182
Query: 285 KPVHWSPSSRTALAEAELEYPEGHVSRSIYAVFRMVSAPPSTSGLLNEFLPDLGLAVWTT 344
KPV+W P +ALAEAE+EY + S SIY F +V L D L +WTT
Sbjct: 183 KPVYWCPDCGSALAEAEVEYHD-KTSPSIYVAFPVVDGK------LAAAFKDASLVIWTT 235
Query: 345 TPWTVPANAAVAVNAKLQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFIIVASDL 404
TPWT+PAN A+AV+ + Y +VE+ + +K +IVA DL
Sbjct: 236 TPWTLPANQAIAVHPEFDYVLVEV-----------------------EGEK--LIVAKDL 270
Query: 405 VPTLEAKWG-TKLVIKKTLAGSDLENCRYVHPVDNRQCPVVIGGDYITTESGTGLVHTAP 463
V ++ ++G + T G +LE HP +R P VI GD++T ++GTGLVHTAP
Sbjct: 271 VESVLERFGWEDYEVLATFKGKELEGLVAQHPFYDRDSP-VILGDHVTLDAGTGLVHTAP 329
Query: 464 GHGQEDYVTSLKYGLPILSPVDDEGKFTEEAGKFSGLDVLGDGNVAVVKYLDEQMSLIME 523
GHG++DYV KYGL +L+PVDD+G++TEEA F+GL V N +++ L+E+ +L+ E
Sbjct: 330 GHGEDDYVVGQKYGLEVLNPVDDDGRYTEEAPLFAGLFVF-KANPKIIEKLEEKGALLKE 388
Query: 524 EPYEHKYPYDWRTKKPTIFRATEQWFASVE--GFRQAAMDAIGQVKWVPPQ 572
E H YP+ WRTKKP IFRAT QWF S++ G R+ A+ AI +VKW+P
Sbjct: 389 EKITHSYPHCWRTKKPVIFRATPQWFISMDKKGLREQALKAIEKVKWIPAW 439
Score = 267 bits (685), Expect = 4e-77
Identities = 90/208 (43%), Positives = 131/208 (62%), Gaps = 10/208 (4%)
Query: 577 YGADVLRLWVSSVDYTGDVMIGPQVLRQMSDIYRKLRGTLRYLLGNLHDW-RVGNSISYD 635
YGAD+LRLWV+S DY+GDV I ++L+Q+++ YR++R TLR+LLGNL+D+ +++ Y+
Sbjct: 610 YGADILRLWVASTDYSGDVRISDEILKQVAEAYRRIRNTLRFLLGNLNDFDPAKDAVPYE 669
Query: 636 DLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRLYTGG 695
+L +D++AL +L + + I E+YE+Y F K++Q + F VDLS FY D+ KDRLYT
Sbjct: 670 ELLELDRWALHRLAELQEEILEAYENYDFHKVYQKLHNFCSVDLSAFYLDIIKDRLYTDA 729
Query: 696 TTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAAEFVFESKWP 755
S RRS QT L L ++VR +APIL AE++WQ LP G E VF +WP
Sbjct: 730 ADSLARRSAQTALYHILEALVRWLAPILSFTAEEIWQYLP-------GEREESVFLEEWP 782
Query: 756 VLDEKWRTFPVGEIYFWGKILEVIVVVT 783
+ E + W ++LEV V
Sbjct: 783 EVPELADDEELLA--KWEELLEVRDEVN 808
>gnl|CDD|223138 COG0060, IleS, Isoleucyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 933
Score = 584 bits (1507), Expect = 0.0
Identities = 218/475 (45%), Positives = 278/475 (58%), Gaps = 45/475 (9%)
Query: 106 YKHTVDLPKTTFGMRANALVREPEIHKLWDDHQVF--LRVADKNDGENFVLHDGPPYANG 163
YK T++LPKT F MRAN +EP+I K W+++ ++ +R FVLHDGPPYANG
Sbjct: 3 YKDTLNLPKTDFPMRANLPKKEPKILKFWEENDIYEKIREERNKGKPKFVLHDGPPYANG 62
Query: 164 NLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKK--DLTP 221
N+H+GHALNKILKDII RYK +Q Y V YVPGWDCHGLPIELKV + L K
Sbjct: 63 NIHIGHALNKILKDIIVRYKTMQGYDVPYVPGWDCHGLPIELKVEKKLGIGKKDIESFGV 122
Query: 222 SKLRAKAAKFAKATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIY 281
+ R K +FA V Q FKR GVW DW NPY T+DP YE + F ++ +G +Y
Sbjct: 123 EEFREKCREFALEQVDEQKEQFKRLGVWGDWENPYKTMDPSYEESVWWAFKELYEKGLLY 182
Query: 282 RGKKPVHWSPSSRTALAEAELEYPEGHVSRSIYAVFRMVSAPPSTSGLLNEFLPDLGLAV 341
RG KPV WSP TALAEAE+EY + SIY F P L+E + L +
Sbjct: 183 RGYKPVPWSPRCETALAEAEVEYGD-VKDPSIYVKF------PVKDEGLDE---NAYLVI 232
Query: 342 WTTTPWTVPANAAVAVNAKLQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFIIVA 401
WTTTPWT+PAN A+AV+ L Y +VE+ +I+A
Sbjct: 233 WTTTPWTLPANLAIAVHPDLDYVLVEV-------------------------NGEKLILA 267
Query: 402 SDLVPTLEAKWG-TKLVIKKTLAGSDLENCRYVHPVDNRQCPV---VIGGDYITTESGTG 457
LV ++ K G + +T GS+LE RY HP + VI GD++T + GTG
Sbjct: 268 KALVESVAKKAGVEDYEVLETFKGSELEGLRYEHPFYDFVYDRAFPVILGDHVTLDDGTG 327
Query: 458 LVHTAPGHGQEDYVTSLKYG-LPILSPVDDEGKFTEEAGKFSGLDVLGDGNVAVVKYLDE 516
LVHTAPGHG+EDY KYG L +L+PVDD G++TEEA K+ GL V D N +++ L E
Sbjct: 328 LVHTAPGHGEEDYEVGKKYGLLEVLNPVDDNGRYTEEAPKYEGLFVK-DANKKIIEDLKE 386
Query: 517 QMSLIMEEPYEHKYPYDWRTKKPTIFRATEQWFASVEGFRQAAMDAIGQVKWVPP 571
+ +L+ E EH YP+ WRTK P I+RAT QWF SV+ R + I +V WVP
Sbjct: 387 KGNLLKSEKIEHSYPHCWRTKTPLIYRATPQWFVSVDKLRDKMLKEINKVNWVPD 441
Score = 214 bits (548), Expect = 1e-58
Identities = 82/203 (40%), Positives = 126/203 (62%), Gaps = 7/203 (3%)
Query: 577 YGADVLRLWVSSVDYTGDVMIGPQVLRQMSDIYRKLRGTLRYLLGNLHDWRVG-NSISYD 635
YGAD+LRLWV+S DY D+ ++L+Q+ ++YRK+R T R+LLGNL D+ +++ +
Sbjct: 620 YGADILRLWVASSDYWEDLRFSDEILKQVREVYRKIRNTYRFLLGNLDDFDPKKDAVLPE 679
Query: 636 DLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRLYTGG 695
+L +D++ L +L ++VK +RE+YE+Y F K+ + + F+ DLSN+Y D+ KDRLYT
Sbjct: 680 ELRELDRWILSRLNSLVKEVREAYENYDFHKVVRALMNFVSEDLSNWYLDIIKDRLYTEA 739
Query: 696 TTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAAEFVFESKWP 755
S RR+ QT L L ++VR++APILP AE++WQNLP E V WP
Sbjct: 740 ADSPDRRAAQTTLYHILKALVRLLAPILPFTAEEIWQNLPGER------KEESVHLEDWP 793
Query: 756 VLDEKWRTFPVGEIYFWGKILEV 778
+DE+ W +L++
Sbjct: 794 EVDEELIDVEAALAARWEALLKL 816
>gnl|CDD|232953 TIGR00392, ileS, isoleucyl-tRNA synthetase. The isoleucyl tRNA
synthetase (IleS) is a class I amino acyl-tRNA ligase
and is particularly closely related to the valyl tRNA
synthetase. This model may recognize IleS from every
species, including eukaryotic cytosolic and
mitochondrial forms [Protein synthesis, tRNA
aminoacylation].
Length = 861
Score = 531 bits (1369), Expect = e-177
Identities = 201/474 (42%), Positives = 269/474 (56%), Gaps = 47/474 (9%)
Query: 116 TFGMRANALVREPEIHKLWDDHQVFLRVADKNDGEN-FVLHDGPPYANGNLHMGHALNKI 174
F MR N RE +I W ++ +F +V N G+ F+ HDGPPYANG++H+GHALNKI
Sbjct: 1 KFPMRGNLSKREEKILAFWQENDIFEKVKKLNKGKPEFIFHDGPPYANGSIHLGHALNKI 60
Query: 175 LKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKL---RAKAAKF 231
LKDII RYK +Q + V PGWD HGLPIE KV + L KK+++ ++ R K +F
Sbjct: 61 LKDIILRYKTMQGFNVTRKPGWDTHGLPIEHKVEKKLGISGKKEISSLEIEEFREKCREF 120
Query: 232 AKATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSP 291
A ++ Q F+R GVW DW NPY T+DP YE +Q +F + +G +YRG KPV+WSP
Sbjct: 121 ALKQIEEQREQFQRLGVWGDWENPYKTMDPSYEESQWWLFKEAHEKGLLYRGLKPVYWSP 180
Query: 292 SSRTALAEAELEYPEG---HVSRSIYAVFRMVSAPPSTSGLLNEFLPDLGLAVWTTTPWT 348
RTALAEAE+EY E SIY F + + + L +WTTTPWT
Sbjct: 181 RCRTALAEAEVEYKENYKDVKDPSIYVKFPVKKDKKTYLKVKLSS-----LLIWTTTPWT 235
Query: 349 VPANAAVAVNAKLQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFIIVASDLVPTL 408
+P+N A+AV+ +YA+V+ + K + I+A LV L
Sbjct: 236 LPSNLAIAVHPDFEYALVQD-----------------------NTKVEYFILAKKLVEKL 272
Query: 409 EAKWGTKLVIKKTLAGSDLENCRYVHPVDNR------QCPVVIGGDYITTESGTGLVHTA 462
K G+ I KT GSDLE Y HP+ + PVVIGGD++TTE GTG+VHTA
Sbjct: 273 YNKAGSDYEIIKTFKGSDLEGLEYEHPLYDFVSQLKEGAPVVIGGDHVTTEDGTGIVHTA 332
Query: 463 PGHGQEDYVTSLKYGLPILSPVDDEGKFTEEAGKFSGLDVLGDG------NVAVVKYLDE 516
PGHG+EDY KYGL +LSPVD++G +TE F G V N +++ L +
Sbjct: 333 PGHGEEDYEIGKKYGLEVLSPVDEKGVYTEGVNDFQGRFVKDADKDIIKANKIIIEQLKD 392
Query: 517 QMSLIMEEPYEHKYPYDWRTKKPTIFRATEQWFASVEGFRQAAMDAIGQVKWVP 570
+ L+ E H YP+ WRTK P I+RATEQWF + + ++ I +V WVP
Sbjct: 393 KGLLLKAEKITHSYPHCWRTKTPVIYRATEQWFIKTKDIKDQMLEQIKKVNWVP 446
Score = 172 bits (439), Expect = 9e-45
Identities = 72/187 (38%), Positives = 115/187 (61%), Gaps = 11/187 (5%)
Query: 577 YGADVLRLWVSSVDYTGDVMIGPQVLRQMSDIYRKLR-GTLRYLL--GNLHDWRVG-NSI 632
YGAD+LRL+V+S D D+ ++L+Q+ + YRK+R T R+LL NL + NS+
Sbjct: 629 YGADILRLYVASSDPWEDLRFSDEILKQVVEKYRKIRWNTYRFLLTYANLDKFDPLFNSV 688
Query: 633 SYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRLY 692
+ + P D++ L +L ++V+ + E+ E Y F K+ + +Q FI+ +LSN+Y + +DRLY
Sbjct: 689 AVEKFPEEDRWILSRLNSLVEEVNEALEKYNFHKVLRALQDFIVEELSNWYIRIIRDRLY 748
Query: 693 TGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAAEFVFES 752
+ +R+ QT L LL++VR++AP LPH AE+++QNLP G E V +
Sbjct: 749 CEAKDN-DKRAAQTTLYYALLTLVRLLAPFLPHTAEEIYQNLPG------GEEEESVHLN 801
Query: 753 KWPVLDE 759
WP +DE
Sbjct: 802 LWPEVDE 808
>gnl|CDD|237514 PRK13804, ileS, isoleucyl-tRNA synthetase; Provisional.
Length = 961
Score = 494 bits (1274), Expect = e-162
Identities = 191/490 (38%), Positives = 273/490 (55%), Gaps = 46/490 (9%)
Query: 106 YKHTVDLPKTTFGMRANALVREPEIHKLWDDHQVFLRVADKNDG-ENFVLHDGPPYANGN 164
YK T++LP+T F MRA +EPEI W++ ++ ++ ++ G FVLHDGPPYANGN
Sbjct: 9 YKKTLNLPQTAFPMRAGLPQKEPEIQARWEEIDLYKKLREQAKGRPKFVLHDGPPYANGN 68
Query: 165 LHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDA--KKDLTPS 222
+H+GHALNKILKD+I R K + + YVPGWDCHGLPIE K+ + K ++ +
Sbjct: 69 IHIGHALNKILKDVIVRSKQMLGFDANYVPGWDCHGLPIEWKIEEKYRAKGKNKDEVPVA 128
Query: 223 KLRAKAAKFAKATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYR 282
+ R + ++A + + Q FKR GV DW+NPY T+D EA FG+ + +G +YR
Sbjct: 129 EFRKECREYALSWIDVQREEFKRLGVLGDWDNPYTTMDFHAEARIAREFGKFAAKGQLYR 188
Query: 283 GKKPVHWSPSSRTALAEAELEYPEGHVSRSIYAVFRMVSAPPSTSGLLNEFLPDLGLAVW 342
G KPV WS RTALAEAE+EY S +I+ F + G+L+ + +W
Sbjct: 189 GSKPVMWSVVERTALAEAEIEY-HDIESDTIWVKFPVK----DGKGILDS---GTYVVIW 240
Query: 343 TTTPWTVPANAAVAVNAKLQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFIIVAS 402
TTTPWT+PAN A++ + ++Y + E+ A + ++PG L +VA
Sbjct: 241 TTTPWTIPANRAISYSPDIEYGLYEVT-------GAENDFWAKPGERL--------VVAD 285
Query: 403 DLVPTLEAKWG-TKLVIKKTLAGSDLENCRYVHPVDNRQCPV----VIGGDYITTESGTG 457
L ++ K G + G DLE HP+D V+ GD++T ++GTG
Sbjct: 286 ALAESVAKKAGVESFERLADVKGEDLEKIVCAHPLDGLDGYEFEVPVLDGDHVTDDAGTG 345
Query: 458 LVHTAPGHGQEDYVTSLKYGL-PILSPVDDEGKFTEEAGKFSGLDVL-------GDGNVA 509
VHTAPGHG+ED+ +KYG I VD++G +TE A F G V+ GD N A
Sbjct: 346 FVHTAPGHGREDFNVWMKYGRTEIPVTVDEDGFYTENAPGFGGARVIDDEGKKYGDANKA 405
Query: 510 VVKYLDEQMSLIMEEPYEHKYPYDWRTKKPTIFRATEQWFASVE-------GFRQAAMDA 562
V++ L E L+ +H YP+ WR+KKP IFR T QWF S++ R A+DA
Sbjct: 406 VIEKLIEAGLLLARGRLKHSYPHSWRSKKPVIFRNTPQWFISMDKDLGDGTTLRSRALDA 465
Query: 563 IGQVKWVPPQ 572
I + ++VP
Sbjct: 466 IDKTRFVPAA 475
Score = 200 bits (512), Expect = 1e-53
Identities = 85/203 (41%), Positives = 123/203 (60%), Gaps = 10/203 (4%)
Query: 569 VPPQE-APGYGADVLRLWVSSVDYTGDVMIGPQVLRQMSDIYRKLRGTLRYLLGNLHDWR 627
V PQ+ GAD+LRLWV+SVDY+ D IG ++L+Q+S+ YRKLR TLR+LLGNL +
Sbjct: 639 VSPQDVIKQSGADILRLWVASVDYSDDQRIGKEILKQVSETYRKLRNTLRWLLGNLAHFD 698
Query: 628 VG-NSISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDV 686
G + ++Y DLP +++Y L +L + +RE+Y++Y F +I++ + F+ VDLS FYFD+
Sbjct: 699 PGEDVVAYADLPELERYMLHRLNELDGLVREAYDAYDFKRIYKALVNFVNVDLSAFYFDI 758
Query: 687 AKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAA 746
KD LY +S RR+ QTV + + + +APILP AE+ W E+ S
Sbjct: 759 RKDALYCDAPSSLRRRAAQTVFYEIFVRLTKWLAPILPFTAEEAWLYRYPE---EEVSVH 815
Query: 747 EFVF---ESKW--PVLDEKWRTF 764
F + W L EKWR F
Sbjct: 816 LEQFPETPAFWRDDALAEKWRKF 838
>gnl|CDD|215739 pfam00133, tRNA-synt_1, tRNA synthetases class I (I, L, M and V).
Other tRNA synthetase sub-families are too dissimilar to
be included.
Length = 606
Score = 418 bits (1076), Expect = e-137
Identities = 172/446 (38%), Positives = 240/446 (53%), Gaps = 44/446 (9%)
Query: 129 EIHKLWDDHQVFLRVADKNDG-ENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQN 187
+I++ WD+ F + + G +F +HDGPP A G LH+GHALNK LKDI+ RYK +Q
Sbjct: 1 QIYQFWDEQGYFKKSLENGKGKPSFTIHDGPPNATGLLHIGHALNKTLKDIVIRYKRMQG 60
Query: 188 YKVRYVPGWDCHGLPIELKVLQSLDEDAKK---DLTPSKLRAKAAKFAKATVKAQMASFK 244
+ V +VPGWD HGLP E KV + L KK L K R K ++ + FK
Sbjct: 61 FDVLWVPGWDHHGLPTEQKVEKKLGIKGKKDRHKLGREKFREKCREWKMEYADEIRSQFK 120
Query: 245 RYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAEAELEY 304
R GV DW+ Y TLDP EAA VF ++ +G IYRGKKPV+WSP+ TAL+EAE+EY
Sbjct: 121 RLGVSGDWDREYFTLDPGLEAAVWRVFVRLHDKGLIYRGKKPVNWSPALNTALSEAEVEY 180
Query: 305 PEGHVSRSIYAVFRMVSAPPSTSGLLNEFLPDLGLAVWTTTPWTVPANAAVAVNAKLQYA 364
+ SI+ F + L +WTTTPWT+P N AVAVN + Y
Sbjct: 181 KDVK-GPSIHVAFPLADG------------KGASLVIWTTTPWTLPGNTAVAVNPEFNYV 227
Query: 365 VVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFIIVASDLVPTLEAKWGTKLVIKKTLAG 424
+ + + I+A L+ +L K I + G
Sbjct: 228 KIRV-------------------------TGEYYILAEALLKSLYKKKKEDGEILEDFRG 262
Query: 425 SDLENCRYVHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPILSPV 484
+L +Y+HP NR+ P +I DY+ E GTG VH AP HG++DY ++ L ++PV
Sbjct: 263 KELIGKKYIHPFVNREIP-IIADDYVDMEFGTGAVHIAPAHGEDDYEVGKRHNLEFINPV 321
Query: 485 DDEGKFTEEAGKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTKKPTIFRA 544
DD+G + EEA +F GL +V+ L E+ L+ EP EH YP+ WR+ P I+RA
Sbjct: 322 DDDGTYNEEAPEFQGLKRF-KARKKIVELLTEKGLLLKIEPIEHSYPHCWRSGTPIIYRA 380
Query: 545 TEQWFASVEGFRQAAMDAIGQVKWVP 570
T QWF ++ +AA+ A+ +V++VP
Sbjct: 381 TPQWFVRMKNLAEAALKAVEKVQFVP 406
Score = 32.3 bits (74), Expect = 1.2
Identities = 12/19 (63%), Positives = 15/19 (78%)
Query: 577 YGADVLRLWVSSVDYTGDV 595
YGAD LRLW++S DY D+
Sbjct: 585 YGADALRLWLASSDYGRDI 603
>gnl|CDD|235681 PRK06039, ileS, isoleucyl-tRNA synthetase; Reviewed.
Length = 975
Score = 384 bits (989), Expect = e-120
Identities = 151/459 (32%), Positives = 223/459 (48%), Gaps = 60/459 (13%)
Query: 126 REPEIHKLWDDHQVFLRVADKN-DGENFVLHDGPPYANGNLHMGHALNKILKDIINRYKL 184
E E+ K W ++ +F + + G FV +DGPP ANG H GH L + +KD++ RYK
Sbjct: 16 LEEEVLKFWKENDIFEKSIENREGGPEFVFYDGPPTANGLPHYGHLLTRTIKDVVPRYKT 75
Query: 185 LQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTP---SKLRAKAAKFAKATVKAQMA 241
++ YKV GWD HGLP+EL+V + L KKD+ K K +
Sbjct: 76 MKGYKVERRAGWDTHGLPVELEVEKELGISGKKDIEEYGIEKFNEKCRESVLRYTDEWEE 135
Query: 242 SFKRYGVWADWNNPYLTLDPEYEAAQIE----VFGQMSLQGYIYRGKKPVHWSPSSRTAL 297
+R G W D++NPY TLD EY +E Q+ +G +Y+G + V + P T L
Sbjct: 136 YTERLGRWVDFDNPYKTLDNEY----MESVWWALKQLYDKGLLYKGYRVVPYCPRCETPL 191
Query: 298 AEAELE--YPEGHVSRSIYAVFRMVSAPPSTSGLLNEFLPDLGLAVWTTTPWTVPANAAV 355
+ E+ Y + S+Y F++ G NE+ L WTTTPWT+P+N A+
Sbjct: 192 SNHEVAQGYKDVK-DPSVYVKFKL-------KGEENEY-----LLAWTTTPWTLPSNLAL 238
Query: 356 AVNAKLQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFIIVASDLVPTLEAKWGTK 415
AV+ + Y VE I+A L+ +
Sbjct: 239 AVHPDIDYVKVE-------------------------GGGEVYILAEALLEKVL---KED 270
Query: 416 LVIKKTLAGSDLENCRYVHP----VDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYV 471
+ +T GS+LE Y P D + V+ D++TTE GTG+VH AP G++D+
Sbjct: 271 YEVVETFKGSELEGLEYEPPFPYFADEKNAFRVVLADFVTTEDGTGIVHIAPAFGEDDFE 330
Query: 472 TSLKYGLPILSPVDDEGKFTEEAGKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYP 531
KYGLP++ PVDD+G+FTEE ++G V D + +++ L E+ L E YEH YP
Sbjct: 331 VGKKYGLPVVCPVDDDGRFTEEVPDYAGKFVK-DADKEIIRDLKERGLLFKAETYEHSYP 389
Query: 532 YDWRTKKPTIFRATEQWFASVEGFRQAAMDAIGQVKWVP 570
+ WR P I+ ATE WF V + ++ ++ W P
Sbjct: 390 HCWRCDTPLIYYATESWFIRVTKIKDRMLELNQKINWYP 428
Score = 72.9 bits (180), Expect = 5e-13
Identities = 55/194 (28%), Positives = 90/194 (46%), Gaps = 19/194 (9%)
Query: 577 YGADVLRLWV-SSVDYTGDVMIGPQVLRQMSDIYRKLRGTLR------YLLGNLHDW-RV 628
YGAD LR ++ SS D+ +R ++ RK TL L NL +
Sbjct: 610 YGADALRWYLLSSSAPWEDLRFSEDGVR---EVVRKFLLTLWNVYSFFVLYANLDGFDYP 666
Query: 629 GNSISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAK 688
D L +D++ L +L ++VK + E+ ++Y K + I+ F+ DLSN+Y ++
Sbjct: 667 PAEDEVDSLNELDRWILSRLNSLVKEVTEALDNYDITKAARAIRDFV-DDLSNWYIRRSR 725
Query: 689 DRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAAEF 748
R + + + L L ++ R+ AP P +AE+++QNL T ED E
Sbjct: 726 RRFWKEEDDP-DKLAAYATLYTVLETLSRLAAPFTPFIAEEIYQNL----TREDA--PES 778
Query: 749 VFESKWPVLDEKWR 762
V + WP +DE
Sbjct: 779 VHLADWPEVDESLI 792
>gnl|CDD|173909 cd00818, IleRS_core, catalytic core domain of isoleucyl-tRNA
synthetases. Isoleucine amino-acyl tRNA synthetases
(IleRS) catalytic core domain . This class I enzyme is a
monomer which aminoacylates the 2'-OH of the nucleotide
at the 3' of the appropriate tRNA. The core domain is
based on the Rossman fold and is responsible for the
ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. It contains the characteristic
class I HIGH and KMSKS motifs, which are involved in ATP
binding. IleRS has an insertion in the core domain,
which is subject to both deletions and rearrangements.
This editing region hydrolyzes mischarged cognate tRNAs
and thus prevents the incorporation of chemically
similar amino acids.
Length = 338
Score = 236 bits (605), Expect = 3e-71
Identities = 80/141 (56%), Positives = 92/141 (65%), Gaps = 3/141 (2%)
Query: 152 FVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSL 211
FV HDGPPYANG H GHALNKILKDIINRYK +Q Y V PGWDCHGLPIELKV + L
Sbjct: 3 FVFHDGPPYANGLPHYGHALNKILKDIINRYKTMQGYYVPRRPGWDCHGLPIELKVEKEL 62
Query: 212 DEDAKKD---LTPSKLRAKAAKFAKATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQI 268
KKD + ++ AK +FA V Q F+R GVW DW NPY T+DPEY +
Sbjct: 63 GISGKKDIEKMGIAEFNAKCREFALRYVDEQEEQFQRLGVWVDWENPYKTMDPEYMESVW 122
Query: 269 EVFGQMSLQGYIYRGKKPVHW 289
VF Q+ +G +YRG K V W
Sbjct: 123 WVFKQLHEKGLLYRGYKVVPW 143
Score = 58.0 bits (141), Expect = 7e-09
Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 4/47 (8%)
Query: 526 YEHKYPYDWRTKKPTIFRATEQWFASVEGFRQAAMDAIGQVKWVPPQ 572
Y W P I+RAT QWF V + ++A +V W+P
Sbjct: 135 YRGYKVVPW----PLIYRATPQWFIRVTKIKDRLLEANDKVNWIPEW 177
Score = 33.7 bits (78), Expect = 0.30
Identities = 17/31 (54%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 569 VPPQE-APGYGADVLRLWVSSVD-YTGDVMI 597
V PQE YGAD LRLWV+S D Y D+
Sbjct: 308 VDPQEVVDKYGADALRLWVASSDVYAEDLRF 338
>gnl|CDD|153414 cd07960, Anticodon_Ia_Ile_BEm, Anticodon-binding domain of
bacterial and eukaryotic mitochondrial isoleucyl tRNA
synthetases. This domain is found in isoleucyl tRNA
synthetases (IleRS), which belong to the class Ia
aminoacyl tRNA synthetases. It lies C-terminal to the
catalytic core domain, and recognizes and specifically
binds to the tRNA anticodon. This family includes
bacterial and eukaryotic mitochondrial members. IleRS
catalyzes the transfer of isoleucine to the 3'-end of
its tRNA.
Length = 180
Score = 229 bits (587), Expect = 8e-71
Identities = 77/188 (40%), Positives = 119/188 (63%), Gaps = 9/188 (4%)
Query: 597 IGPQVLRQMSDIYRKLRGTLRYLLGNLHDW-RVGNSISYDDLPMIDQYALFQLENIVKNI 655
I ++L+Q+++ YRK+R T R+LLGNL+D+ +++ Y++L +D+YAL +L ++K +
Sbjct: 1 ISDEILKQVAEAYRKIRNTFRFLLGNLNDFDPAKDAVPYEELLELDRYALHRLNELIKEV 60
Query: 656 RESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRLYTGGTTSFTRRSCQTVLSAHLLSI 715
RE+YE+Y+F K++Q + F VDLS FY D+ KDRLY S RRS QTVL L ++
Sbjct: 61 REAYENYEFHKVYQALNNFCTVDLSAFYLDIIKDRLYCDAKDSLERRSAQTVLYHILDAL 120
Query: 716 VRVIAPILPHLAEDVWQNLPFAYTLEDGSAAEFVFESKWPVLDEKWRTFPVGEIYFWGKI 775
++++APILP AE+VW++LP E VF WP L E+W+ + E W K+
Sbjct: 121 LKLLAPILPFTAEEVWEHLPGE------KKEESVFLEDWPELPEEWKDEELEE--KWEKL 172
Query: 776 LEVIVVVT 783
L + V
Sbjct: 173 LALRDEVN 180
>gnl|CDD|215477 PLN02882, PLN02882, aminoacyl-tRNA ligase.
Length = 1159
Score = 211 bits (540), Expect = 5e-57
Identities = 143/480 (29%), Positives = 218/480 (45%), Gaps = 76/480 (15%)
Query: 127 EPEIHKLWDDHQVFLRVADKNDG-ENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLL 185
E +I LW + F + +G ++ +DGPP+A G H GH L +KDI+ RY+ +
Sbjct: 14 EEKILSLWSEIDAFKTQLKRTEGLPEYIFYDGPPFATGLPHYGHILAGTIKDIVTRYQSM 73
Query: 186 QNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKAAKFAKAT-------VKA 238
+ V GWDCHGLP+E ++ + L + D+ L+ K+ + K
Sbjct: 74 TGHHVTRRFGWDCHGLPVEYEIDKKLGIKRRDDV----LKMGIDKYNEECRSIVTRYSKE 129
Query: 239 QMASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALA 298
+ R G W D+ N Y T+DP++ + VF Q+ +G +Y+G K + +S + +T L+
Sbjct: 130 WEKTVTRTGRWIDFENDYKTMDPKFMESVWWVFKQLFEKGLVYKGFKVMPYSTACKTPLS 189
Query: 299 --EAELEYPEGHVSRSIYAVFRMVSAPPSTSGLLNEFLPDLGLAVWTTTPWTVPANAAVA 356
EA L Y + VS AV MVS P ++ + + WTTTPWT+P+N A+
Sbjct: 190 NFEAGLNYKD--VSD--PAV--MVSFP-----IVGDPD-NASFVAWTTTPWTLPSNLALC 237
Query: 357 VNAKLQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFIIVASDL------VPTLEA 410
VN Y V K KV+I+ S L P +
Sbjct: 238 VNPNFTYVKVRN----------------------KYTGKVYIVAESRLSALPTAKPKSKK 275
Query: 411 KWGTKLV-----IKKTLAGSDLENCRYVHPV------DNRQCPVVIGGDYITTESGTGLV 459
+ + + GS L +Y P+ + V+ DY+T +SGTG+V
Sbjct: 276 GSKPENAAEGYEVLAKVPGSSLVGKKYE-PLFDYFSEFSDTAFRVVADDYVTDDSGTGVV 334
Query: 460 HTAPGHGQEDYVTSLKYG-------LPILSPVDDEGKFTEEAGKFSGLDVLGDGNVAVVK 512
H AP G++DY L G LP+ PVDD+G FTE+ FSG V D + ++
Sbjct: 335 HCAPAFGEDDYRVCLANGIIEKGGNLPV--PVDDDGCFTEKVTDFSGRYV-KDADKDIIA 391
Query: 513 YLDEQMSLIMEEPYEHKYPYDWRTKKPTIFRATEQWFASVEGFRQAAMDAIGQVKWVPPQ 572
+ + L+ H YP+ WR+ P I+RA WF VE + ++ Q WVP
Sbjct: 392 AIKAKGRLVKSGSITHSYPFCWRSDTPLIYRAVPSWFVKVEEIKDRLLENNKQTYWVPDY 451
Score = 42.4 bits (100), Expect = 0.001
Identities = 43/182 (23%), Positives = 75/182 (41%), Gaps = 38/182 (20%)
Query: 577 YGADVLRLWVSSVDYTGDVMIGPQVLRQMS-------------DIYRKLRGTLRYLLGNL 623
YGAD LRL+ +I V+R D++ R+L+ N
Sbjct: 632 YGADALRLY----------LINSPVVRAEPLRFKEEGVFGVVKDVFLPWYNAYRFLVQNA 681
Query: 624 HDWRVGNSISYDDLP---------MIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRF 674
V + L ++D++ +++VK +RE +Y+ + + + +F
Sbjct: 682 KRLEVEGGAPFVPLDLAKLQNSANVLDRWINSATQSLVKFVREEMGAYRLYTVVPYLVKF 741
Query: 675 IIVDLSNFYFDVAKDRL--YTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQ 732
I +L+N Y + RL TG R+ + L LL+ +V+AP P E ++Q
Sbjct: 742 I-DNLTNIYVRFNRKRLKGRTGEEDC---RTALSTLYNVLLTSCKVMAPFTPFFTEVLYQ 797
Query: 733 NL 734
NL
Sbjct: 798 NL 799
>gnl|CDD|173617 PTZ00427, PTZ00427, isoleucine-tRNA ligase, putative; Provisional.
Length = 1205
Score = 172 bits (436), Expect = 4e-44
Identities = 131/514 (25%), Positives = 208/514 (40%), Gaps = 98/514 (19%)
Query: 122 NALVREPEIHKLWDDHQVFLRVADKNDGEN-FVLHDGPPYANGNLHMGHALNKILKDIIN 180
N + E ++ K W F + ++ +DGPP+A G H GH L I+KD +
Sbjct: 73 NIVEEEEKVLKYWKSIDAFNTSNKLAKNKKAYIFYDGPPFATGLPHYGHLLAGIIKDCVT 132
Query: 181 RYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTP-------SKLRAKAAKFAK 233
RY + V GWDCHGLPIE ++ + + + K+D+ K R K++
Sbjct: 133 RYFYQCGFSVERKFGWDCHGLPIEYEIEKENNINKKEDILKMGIDVYNEKCRGIVLKYSN 192
Query: 234 ATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSS 293
VK + +R G W D+ N Y T+D + + VF ++ Y+Y+ K + +S
Sbjct: 193 EWVK----TVERIGRWIDFKNDYKTMDKTFMESVWWVFSELYKNNYVYKSFKVMPYSCKC 248
Query: 294 RTALAEAEL-----EYPEGHVSRSIYAVFRMVSAPPST-----------------SGLLN 331
T ++ EL + P+ SI F + S P S L N
Sbjct: 249 NTPISNFELNLNYKDTPD----PSIIISFVLCSDFPKVEEECNIEEDKQLLGEKYSVLYN 304
Query: 332 E-----------------FLPDLGLAVWTTTPWTVPANAAVAVNAKLQY-AVVEIQSLLE 373
+ + WTTTPWT+P+N A+ VN Y + ++S
Sbjct: 305 NKRENSNNGNNNSTNNVCYAQHSEILAWTTTPWTLPSNLALCVNEHFTYLRIHHVKS--- 361
Query: 374 GDSAAPANKKSRPGNVLKDQKKVFIIVASDLVPTL-EAKWGTK-LVIKKTLAGSDLENCR 431
+V I+ L + E KW + L I G +L+ R
Sbjct: 362 --------------------NRVVIVGECRLEWIMKELKWNVEDLKIVNRFKGKELKGLR 401
Query: 432 YVHPVDN---------RQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGL--P- 479
Y P+ + ++ D++T ++GTG+VH AP +G++D+ K G+ P
Sbjct: 402 Y-KPLFTNFYEKYNFKERAYKILADDFVTDDAGTGIVHCAPTYGEDDFRVCKKNGVIDPE 460
Query: 480 ---ILSPVDDEGKFTEEAGKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRT 536
+ P+D G FT E + L + NV + K L + L+ H YP+ WR+
Sbjct: 461 KNIFIDPLDANGYFTNEVEEVQNLYIKEADNV-IKKKLKNENRLLSNNTIVHSYPFCWRS 519
Query: 537 KKPTIFRATEQWFASVEGFRQAAMDAIGQVKWVP 570
P I+RA WF V + W+P
Sbjct: 520 DTPLIYRAIPAWFIRVSNSTNELVKNNETTYWIP 553
Score = 39.2 bits (91), Expect = 0.009
Identities = 23/102 (22%), Positives = 56/102 (54%), Gaps = 4/102 (3%)
Query: 634 YDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRLYT 693
Y + ++DQ+ ++++ K++ ++Y+ + + + +F I +L+N+Y + +DR+
Sbjct: 806 YKNDNIMDQWIFSSVQSLTKSVHTEMKAYKLYNVLPKLLQF-IENLTNWYIRLNRDRMRG 864
Query: 694 G-GTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNL 734
G + + C T + HL ++ ++AP P + E ++Q L
Sbjct: 865 SLGEENCLQSLCTTYRTLHLFTV--LMAPFTPFITEYIYQQL 904
>gnl|CDD|185674 cd00668, Ile_Leu_Val_MetRS_core, catalytic core domain of
isoleucyl, leucyl, valyl and methioninyl tRNA
synthetases. Catalytic core domain of isoleucyl,
leucyl, valyl and methioninyl tRNA synthetases. These
class I enzymes are all monomers. However, in some
species, MetRS functions as a homodimer, as a result of
an additional C-terminal domain. These enzymes
aminoacylate the 2'-OH of the nucleotide at the 3' of
the appropriate tRNA. The core domain is based on the
Rossman fold and is responsible for the ATP-dependent
formation of the enzyme bound aminoacyl-adenylate. It
contains the characteristic class I HIGH and KMSKS
motifs, which are involved in ATP binding. Enzymes in
this subfamily share an insertion in the core domain,
which is subject to both deletions and rearrangements.
This editing region hydrolyzes mischarged cognate tRNAs
and thus prevents the incorporation of chemically
similar amino acids. MetRS has a significantly shorter
insertion, which lacks the editing function.
Length = 312
Score = 153 bits (388), Expect = 2e-41
Identities = 56/141 (39%), Positives = 81/141 (57%), Gaps = 1/141 (0%)
Query: 152 FVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSL 211
F + PPYANG+LH+GHAL I+ D I RYK ++ Y+V ++PGWD HGLPIELK +
Sbjct: 2 FYVTTPPPYANGSLHLGHALTHIIADFIARYKRMRGYEVPFLPGWDTHGLPIELKA-ERK 60
Query: 212 DEDAKKDLTPSKLRAKAAKFAKATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQIEVF 271
KK + + R +F + F+R G+ DW++ Y+T +PEY A +F
Sbjct: 61 GGRKKKTIWIEEFREDPKEFVEEMSGEHKEDFRRLGISYDWSDEYITTEPEYSKAVELIF 120
Query: 272 GQMSLQGYIYRGKKPVHWSPS 292
++ +G IYRG PV +
Sbjct: 121 SRLYEKGLIYRGTHPVRITEQ 141
Score = 36.6 bits (85), Expect = 0.038
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 5/48 (10%)
Query: 543 RATEQWFASVEGFRQAAMDAIGQVKWVPPQEAPGYGADVLRLWVSSVD 590
R TEQWF + F++ + A+ + K VP A W+ S+
Sbjct: 137 RITEQWFFDMPKFKEKLLKALRRGKIVPEHVKNRMEA-----WLESLL 179
>gnl|CDD|223599 COG0525, ValS, Valyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 877
Score = 155 bits (393), Expect = 6e-39
Identities = 73/237 (30%), Positives = 116/237 (48%), Gaps = 23/237 (9%)
Query: 127 EPEIHKLWDDHQVFLRVADKNDGENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQ 186
E + +K W++ F + D F + PP G+LHMGHALN L+DI+ RYK ++
Sbjct: 11 EEKWYKKWEESGYF-KPDPNEDKPPFSIDTPPPNVTGSLHMGHALNYTLQDILARYKRMR 69
Query: 187 NYKVRYVPGWDCHGLPIELKVLQSLDEDAKK--DLTPSKLRAKAAKFAK---ATVKAQMA 241
Y V + PG D G+ ++ V + L + DL + K ++ + T++ Q+
Sbjct: 70 GYNVLWPPGTDHAGIATQVVVEKQLAAEGITRHDLGREEFLKKCWEWKEESGGTIREQL- 128
Query: 242 SFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAEAE 301
+R GV DW+ T+DP A E F ++ +G IYRG++ V+W P RTA+++ E
Sbjct: 129 --RRLGVSVDWSRERFTMDPGLSRAVQEAFVRLYEKGLIYRGERLVNWCPKCRTAISDIE 186
Query: 302 LEYPEGHVSRSIYAVFRMVSAPPSTSGLLNEFLPDLGLAVWTTTPWTVPANAAVAVN 358
+EY E Y + + +L V TT P T+ + AVAV+
Sbjct: 187 VEYKEVEGKL-YYIKYPLADGD--------GYLV-----VATTRPETLLGDTAVAVH 229
Score = 96.9 bits (242), Expect = 2e-20
Identities = 47/150 (31%), Positives = 82/150 (54%), Gaps = 5/150 (3%)
Query: 426 DLENCRYVHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPILSPVD 485
L + P+ R+ P+ I +Y+ E GTG V P H DY ++ LP+++ +D
Sbjct: 237 HLVGKEVILPLVGREIPI-IADEYVDPEFGTGAVKITPAHDFNDYEVGKRHNLPLINIID 295
Query: 486 DEGKFTEEA-GKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTKKPTIFRA 544
++G+ EEA G+F+GLD + +V+ L+EQ L+ EP++H + R P
Sbjct: 296 EDGRINEEAAGEFAGLDRF-EARKKIVEDLEEQGLLVKIEPHKHSVGHCERCGTPIEPLL 354
Query: 545 TEQWFASVEGFRQAAMDAI--GQVKWVPPQ 572
++QWF V + A++A+ G++K+VP +
Sbjct: 355 SKQWFVKVLELAKKALEAVKDGKIKFVPER 384
Score = 90.8 bits (226), Expect = 1e-18
Identities = 52/189 (27%), Positives = 93/189 (49%), Gaps = 18/189 (9%)
Query: 577 YGADVLRLWVSSVDYTG-DVMIGPQVLRQMSDIYRKLRGTLRYLLGNLHDWRVGNSISYD 635
YGAD LR ++S+ G D+ + + + KL R++L NL D D
Sbjct: 543 YGADALRFTLASLASPGRDINFDEKRVEGYRNFLNKLWNATRFVLMNLDD---LGPDDLD 599
Query: 636 DLPM--IDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRLYT 693
L + D++ L +L VK + E+ ++Y+F + + + FI D ++Y ++AK RLY
Sbjct: 600 LLALSLADRWILSRLNETVKEVTEALDNYRFDEAARALYEFIWNDFCDWYLELAKPRLYG 659
Query: 694 GGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAAEFVFESK 753
G +R+ + L L +++R++ P +P + E++WQ LP S + +
Sbjct: 660 G---EEEKRAARATLYYVLDTLLRLLHPFMPFITEEIWQKLP-----GTES----IHLAS 707
Query: 754 WPVLDEKWR 762
WP +DE+
Sbjct: 708 WPEVDEELI 716
>gnl|CDD|232969 TIGR00422, valS, valyl-tRNA synthetase. The valyl-tRNA synthetase
(ValS) is a class I amino acyl-tRNA ligase and is
particularly closely related to the isoleucyl tRNA
synthetase [Protein synthesis, tRNA aminoacylation].
Length = 861
Score = 154 bits (390), Expect = 1e-38
Identities = 75/239 (31%), Positives = 115/239 (48%), Gaps = 26/239 (10%)
Query: 127 EPEIHKLWDDHQVFLRVADKNDGENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQ 186
E + +K W+ F + N F + PP G+LH+GHALN ++DII RYK ++
Sbjct: 11 EKKWYKKWEKSGFFKPDGNSN-KPPFCIDIPPPNVTGSLHIGHALNWSIQDIIARYKRMK 69
Query: 187 NYKVRYVPGWDCHGLPIELKVLQSLDEDAKK--DLTPSKLRAKAAKFAK---ATVKAQMA 241
Y V ++PG D G+ ++KV + L + K DL + R K ++ + T+K Q+
Sbjct: 70 GYNVLWLPGTDHAGIATQVKVEKKLGAEGKTKHDLGREEFREKIWEWKEESGGTIKNQI- 128
Query: 242 SFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAEAE 301
KR G DW+ T+D A E F ++ +G IYRG+ V+W P TA+++ E
Sbjct: 129 --KRLGASLDWSRERFTMDEGLSKAVKEAFVRLYEKGLIYRGEYLVNWDPKLNTAISDIE 186
Query: 302 LEYPE--GHVSRSIYAVFRMVSAPPSTSGLLNEFLPDLGLAVWTTTPWTVPANAAVAVN 358
+EY E G + Y + L V TT P T+ + AVAV+
Sbjct: 187 VEYKEVKGKLYYIRYPL---------------ANGSKDYLVVATTRPETMFGDTAVAVH 230
Score = 101 bits (253), Expect = 5e-22
Identities = 45/160 (28%), Positives = 77/160 (48%), Gaps = 9/160 (5%)
Query: 433 VHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPILSPVDDEGKFTE 492
+ P+ R+ P+ I +Y+ E GTG V P H DY ++ L ++ +D++G E
Sbjct: 245 ILPLTGRKIPI-IADEYVDMEFGTGAVKVTPAHDFNDYEWGKRHNLEFINILDEDGLLNE 303
Query: 493 EAGKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTKKPTIFRATEQWFASV 552
AGK+ GL + +V+ L E+ L+ EP+ H WR+ ++QWF V
Sbjct: 304 NAGKYQGLTRF-EARKKIVEDLKEEGLLVKIEPHTHNVGTCWRSGTVVEPLLSKQWFVKV 362
Query: 553 EGFRQAAMDAI--GQVKWVPPQEAPGYGADVLRLWVSSVD 590
E A++A G++K+VP + L W+ ++
Sbjct: 363 EKLADKALEAAEEGEIKFVPKR----MEKRYLN-WLRNIK 397
Score = 82.8 bits (205), Expect = 3e-16
Identities = 46/184 (25%), Positives = 90/184 (48%), Gaps = 12/184 (6%)
Query: 577 YGADVLRLWVSSVDYTG-DVMIGPQVLRQMSDIYRKLRGTLRYLLGNLHDWRVGNSISYD 635
YGAD LR ++S+ G D+ + + + KL R++L NL D + S +
Sbjct: 543 YGADALRFTLASLVTPGDDINFDWKRVESARNFLNKLWNASRFVLMNLSD-DLELSGGEE 601
Query: 636 DLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRLYTGG 695
L + D++ L +L +K +R++ + Y+F + + + FI D ++Y ++ K RLY G
Sbjct: 602 KLSLADRWILSKLNRTIKEVRKALDKYRFAEAAKALYEFIWNDFCDWYIELVKYRLYNGN 661
Query: 696 TTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAAEFVFESKWP 755
+++ + L L +R++ P +P + E++WQ+ A+ + +P
Sbjct: 662 EAE--KKAARDTLYYVLDKALRLLHPFMPFITEEIWQHFK--------EGADSIMLQSYP 711
Query: 756 VLDE 759
V+D
Sbjct: 712 VVDA 715
>gnl|CDD|185677 cd00817, ValRS_core, catalytic core domain of valyl-tRNA
synthetases. Valine amino-acyl tRNA synthetase (ValRS)
catalytic core domain. This enzyme is a monomer which
aminoacylates the 2'-OH of the nucleotide at the 3' of
the appropriate tRNA. The core domain is based on the
Rossman fold and is responsible for the ATP-dependent
formation of the enzyme bound aminoacyl-adenylate. It
contains the characteristic class I HIGH and KMSKS
motifs, which are involved in ATP binding. ValRS has an
insertion in the core domain, which is subject to both
deletions and rearrangements. This editing region
hydrolyzes mischarged cognate tRNAs and thus prevents
the incorporation of chemically similar amino acids.
Length = 382
Score = 132 bits (335), Expect = 2e-33
Identities = 52/149 (34%), Positives = 80/149 (53%), Gaps = 8/149 (5%)
Query: 158 PPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLD--EDA 215
PP G+LHMGHALN ++DII RYK ++ Y V + PG D G+ ++ V + L
Sbjct: 9 PPNVTGSLHMGHALNNTIQDIIARYKRMKGYNVLWPPGTDHAGIATQVVVEKKLGIEGKT 68
Query: 216 KKDLTPSKLRAKAAKFAK---ATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQIEVFG 272
+ DL + K ++ + ++ Q+ KR G DW+ Y T+DP A E F
Sbjct: 69 RHDLGREEFLEKCWEWKEESGGKIREQL---KRLGASVDWSREYFTMDPGLSRAVQEAFV 125
Query: 273 QMSLQGYIYRGKKPVHWSPSSRTALAEAE 301
++ +G IYR + V+W P RTA+++ E
Sbjct: 126 RLYEKGLIYRDNRLVNWCPKLRTAISDIE 154
Score = 33.4 bits (77), Expect = 0.49
Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 534 WRTKKPTIFRATEQWFASVEGFRQAAMDAI--GQVKWVP 570
R+ QWF V+ + A++A+ G +K+VP
Sbjct: 157 SRSGDVIEPLLKPQWFVKVKDLAKKALEAVKEGDIKFVP 195
>gnl|CDD|237306 PRK13208, valS, valyl-tRNA synthetase; Reviewed.
Length = 800
Score = 127 bits (322), Expect = 3e-30
Identities = 55/186 (29%), Positives = 87/186 (46%), Gaps = 14/186 (7%)
Query: 127 EPEIHKLWDDHQVFLRVADKNDG--ENFVLHDGPPYANGNLHMGHALNKILKDIINRYKL 184
E + K+W++ + D + + PP +G+LH+GH + D I RY+
Sbjct: 16 EEKWQKIWEEEGTY---KFDPDERKPVYSIDTPPPTVSGSLHIGHVFSYTHTDFIARYQR 72
Query: 185 LQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKK----DLTPSKLRAKAAKFAKATVKAQM 240
++ Y V + GWD +GLP E KV E D++ + + K
Sbjct: 73 MRGYNVFFPQGWDDNGLPTERKV-----EKYYGIRKDDISREEFIELCRELTDEDEKKFR 127
Query: 241 ASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAEA 300
++R G+ DW+ Y T+ PEY + F + +G IYR + PV W P TA+A+A
Sbjct: 128 ELWRRLGLSVDWSLEYQTISPEYRRISQKSFLDLYKKGLIYRAEAPVLWCPRCETAIAQA 187
Query: 301 ELEYPE 306
E+EY E
Sbjct: 188 EVEYRE 193
Score = 76.0 bits (188), Expect = 5e-14
Identities = 49/193 (25%), Positives = 85/193 (44%), Gaps = 28/193 (14%)
Query: 577 YGADVLRLWVSS----VDYT---GDVMIGPQVLRQMSDIYRKLRGTLRYLLGNLHDWRVG 629
YGAD +R W +S D V IG ++L ++ + R + +
Sbjct: 551 YGADAVRYWAASARLGSDTPFDEKQVKIGRRLLTKLWNASR--------FVLHFSADPEP 602
Query: 630 NSISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKD 689
+ + L +D++ L +L +V+ E+ E+Y F K + I+ F + Y ++ K
Sbjct: 603 DKA--EVLEPLDRWILAKLAKVVEKATEALENYDFAKALEEIESFFWHVFCDDYLELVKS 660
Query: 690 RLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAAEFV 749
R Y G ++S + L L +++R++AP LP + E+VW L GS V
Sbjct: 661 RAY-GEDEEEEQKSARYTLYTVLDTLLRLLAPFLPFITEEVWS------WLYGGS----V 709
Query: 750 FESKWPVLDEKWR 762
+ WP DE+
Sbjct: 710 HRASWPEPDEELI 722
Score = 62.5 bits (153), Expect = 6e-10
Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 1/97 (1%)
Query: 475 KYGLPILSPVDDEGKFTEEAGKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDW 534
+ LP +D++G+ TE AGK +GL + + +V+ L L +EP +H +
Sbjct: 286 ELNLPTRIIIDEDGRMTEAAGKLAGLTIE-EARKKIVEDLKSGGLLGKQEPIKHNVKFCE 344
Query: 535 RTKKPTIFRATEQWFASVEGFRQAAMDAIGQVKWVPP 571
R P T QWF V ++ ++ ++ W P
Sbjct: 345 RCDTPLEILVTRQWFIKVLDLKEELLERGKEINWYPE 381
>gnl|CDD|219767 pfam08264, Anticodon_1, Anticodon-binding domain of tRNA. This
domain is found mainly hydrophobic tRNA synthetases. The
domain binds to the anticodon of the tRNA.
Length = 148
Score = 110 bits (276), Expect = 4e-28
Identities = 40/123 (32%), Positives = 65/123 (52%), Gaps = 11/123 (8%)
Query: 641 DQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRLYTGGTTSFT 700
D++ L +L ++K + E+YE Y+F + F DLS++Y +++KDRLY S
Sbjct: 1 DRWILSRLNKLIKEVTEAYEKYRFNTAASALYEFFWNDLSDWYLELSKDRLYGEAPDSD- 59
Query: 701 RRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAAEFVFESKWPVLDEK 760
RS QTVL L +++R++AP +P + E++WQ L E + + WP DE
Sbjct: 60 -RSAQTVLYEVLETLLRLLAPFMPFITEELWQKLGK---------KESIHLAPWPEPDEV 109
Query: 761 WRT 763
Sbjct: 110 EED 112
>gnl|CDD|235582 PRK05729, valS, valyl-tRNA synthetase; Reviewed.
Length = 874
Score = 105 bits (266), Expect = 2e-23
Identities = 67/193 (34%), Positives = 100/193 (51%), Gaps = 20/193 (10%)
Query: 127 EPEIHKLWDDHQVFLRVADKNDGENF--VLHDGPPYANGNLHMGHALNKILKDIINRYKL 184
E + ++ W++ F D N + F V+ PP G+LHMGHALN L+DI+ RYK
Sbjct: 15 EAKWYQKWEEKGYF--KPDDNSKKPFSIVI--PPPNVTGSLHMGHALNNTLQDILIRYKR 70
Query: 185 LQNYKVRYVPGWDCH-GLPIELKVLQSLDEDAKK--DLTPSKLRAKA----AKFAKATVK 237
+Q Y ++PG D H G+ ++ V + L + K DL K K + T+
Sbjct: 71 MQGYNTLWLPGTD-HAGIATQMVVERQLAAEGKSRHDLGREKFLEKVWEWKEESGG-TIT 128
Query: 238 AQMASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTAL 297
Q+ +R G DW+ T+D A EVF ++ +G IYRGK+ V+W P +TAL
Sbjct: 129 NQL---RRLGASCDWSRERFTMDEGLSKAVREVFVRLYEKGLIYRGKRLVNWDPKLQTAL 185
Query: 298 AEAELEYPE--GH 308
++ E+EY E G
Sbjct: 186 SDLEVEYKEVKGK 198
Score = 92.1 bits (230), Expect = 5e-19
Identities = 40/142 (28%), Positives = 76/142 (53%), Gaps = 4/142 (2%)
Query: 433 VHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPILSPVDDEGKFTE 492
+ P+ R+ P+ I +Y+ E GTG V P H D+ ++ LP+++ +D++G E
Sbjct: 247 ILPLVGREIPI-IADEYVDPEFGTGAVKITPAHDPNDFEVGKRHNLPMINIMDEDGTINE 305
Query: 493 EAGKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTKKPTIFRATEQWFASV 552
G++ GLD + A+V L+E L+ EP+ H + R+ ++QWF +
Sbjct: 306 NPGEYQGLDRF-EARKAIVADLEELGLLVKIEPHTHSVGHSDRSGVVIEPYLSDQWFVKM 364
Query: 553 EGFRQAAMDAI--GQVKWVPPQ 572
+ + A++A+ G++K+VP +
Sbjct: 365 KPLAKPALEAVENGEIKFVPER 386
Score = 75.9 bits (188), Expect = 5e-14
Identities = 51/211 (24%), Positives = 94/211 (44%), Gaps = 23/211 (10%)
Query: 577 YGADVLRLWVSSVDYTG-DVMIGPQVLRQMSDIYR----KLRGTLRYLLGNLHDWRVGNS 631
YGAD LR ++++ G D+ + + YR KL R++L NL VG
Sbjct: 538 YGADALRFTLAALASPGRDIRFDEERVEG----YRNFANKLWNASRFVLMNLEGADVGEL 593
Query: 632 ISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRL 691
++L + D++ L +L V + E+ + Y+F + + + FI + ++Y ++AK L
Sbjct: 594 PDPEELSLADRWILSRLNRTVAEVTEALDKYRFDEAARALYEFIWNEFCDWYLELAKPVL 653
Query: 692 YTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAAEFVFE 751
+R+ + L+ L I+R++ P +P + E++WQ L E +
Sbjct: 654 QEAA-----KRATRATLAYVLEQILRLLHPFMPFITEELWQKLA------PLGIEESIML 702
Query: 752 SKWPVLDEKWRTFPVGEIYFWGKILEVIVVV 782
+ WP DE E + E+I +
Sbjct: 703 APWPEADEAIDEAAEAEF---EWLKELITAI 730
>gnl|CDD|237855 PRK14900, valS, valyl-tRNA synthetase; Provisional.
Length = 1052
Score = 105 bits (264), Expect = 3e-23
Identities = 101/423 (23%), Positives = 173/423 (40%), Gaps = 85/423 (20%)
Query: 158 PPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKK 217
PP G+LH+GHAL L+D++ R+K + + ++PG D G+ ++ V + L + KK
Sbjct: 56 PPNVTGSLHLGHALTATLQDVLIRWKRMSGFNTLWLPGTDHAGIATQMIVEKELKKTEKK 115
Query: 218 ---DLTPSKLRAKAAKFAKATVKAQMASFKRY-GVWADWNNPYLTLDPEYEAAQIEVFGQ 273
DL + + K +++ + G DW T+D A EVF +
Sbjct: 116 SRHDLGREAFLERVWAW-KEQYGSRIGEQHKALGASLDWQRERFTMDEGLSRAVREVFVR 174
Query: 274 MSLQGYIYRGKKPVHWSPSSRTALAEAELEYPEGHVSRSIYAVFRMVSAPPSTSGLLNEF 333
+ +G IYR KK ++W P RTAL++ E+E+ E H +++ A P G
Sbjct: 175 LHEEGLIYREKKLINWCPDCRTALSDLEVEHEEAH-QGELWSF-----AYPLADG----- 223
Query: 334 LPDLGLAVWTTTPWTVPANAAVAVNAKLQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQ 393
+ V TT P T+ + AVAV+ +L P ++ P
Sbjct: 224 --SGEIVVATTRPETMLGDTAVAVHPLDP----RYMALHGKKVRHPITGRTFP------- 270
Query: 394 KKVFIIVASDLVPTLEAKWGTKLVIKKTLAGSDLENCRYVHPVDNRQCPVVIGGDYITTE 453
I+ + LV + K+GT +K T A H ++ +
Sbjct: 271 ----IVADAILV---DPKFGTG-AVKVTPA----------HDFNDFE------------- 299
Query: 454 SGTGLVHTAPGHGQEDYVTSLKYGLPILSPVDDEGKFTEEAGKFSGLDVLGDGNVAVVKY 513
G H +++ + +G+ T EAG +GLD + V +
Sbjct: 300 --VGKRHGLE----------------MITVIGPDGRMTAEAGPLAGLDRF-EARKEVKRL 340
Query: 514 LDEQMSLIMEEPYEHKYPYDWRTKKPTIF--RATEQWFASVEGFRQAAMDAI--GQVKWV 569
L EQ +P H P + TI ++QW+ +E + A++A+ G+ +++
Sbjct: 341 LAEQGLDRGAKP--HVLPLGRCQRSATILEPLLSDQWYVRIEPLARPAIEAVEQGRTRFI 398
Query: 570 PPQ 572
P Q
Sbjct: 399 PEQ 401
Score = 65.0 bits (158), Expect = 1e-10
Identities = 45/188 (23%), Positives = 83/188 (44%), Gaps = 8/188 (4%)
Query: 575 PGYGADVLRLWVSSVDYTG-DVMIGPQVLRQMSDIYRKLRGTLRYLLGNLHDWRVGNSIS 633
YGAD LR ++++ G D+ + + + KL R+ L NL +
Sbjct: 554 EQYGADALRFTLAALTAQGRDIKLAKERIEGYRAFANKLWNASRFALMNLSGY-QERGED 612
Query: 634 YDDLPMI--DQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRL 691
L D++ L +L+ V E+ E+++F + F+ +L ++Y ++AK+ L
Sbjct: 613 PARLARTPADRWILARLQRAVNETVEALEAFRFNDAANAVYAFVWHELCDWYIELAKEAL 672
Query: 692 YTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAAEFVFE 751
RRS Q VL L + R++ P +P + E++W L + A+ V
Sbjct: 673 A--SEDPEARRSVQAVLVHCLQTSYRLLHPFMPFITEELWHVLRAQVGAS--AWADSVLA 728
Query: 752 SKWPVLDE 759
+++P E
Sbjct: 729 AEYPRKGE 736
>gnl|CDD|223569 COG0495, LeuS, Leucyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 814
Score = 105 bits (263), Expect = 4e-23
Identities = 57/192 (29%), Positives = 82/192 (42%), Gaps = 16/192 (8%)
Query: 127 EPEIHKLWDDHQVFLRVADKNDGENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQ 186
E + K W++ +VF D + E F + PY +G LH+GH N + D+I RYK +Q
Sbjct: 11 EEKWQKRWEEAKVFEADEDSDKPEKFYVLVMFPYPSGALHVGHVRNYTIGDVIARYKRMQ 70
Query: 187 NYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKAAKFAKATVKAQMASFKRY 246
Y V + GWD GLP E + K+ AK+ + K
Sbjct: 71 GYNVLHPMGWDAFGLPAE----NAAI----------KIGTDPAKWTYYNIAYMKKQLKSL 116
Query: 247 GVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAEAELEYPE 306
G DW + T DPEY F ++ +G YR + PV+W P T LA ++ +
Sbjct: 117 GFSIDWRREFATCDPEYYKWIQWQFLKLYEKGLAYRKEAPVNWCPVDGTVLANEQVI--D 174
Query: 307 GHVSRSIYAVFR 318
G R V
Sbjct: 175 GGCWRCGEPVEI 186
Score = 52.3 bits (126), Expect = 8e-07
Identities = 44/203 (21%), Positives = 76/203 (37%), Gaps = 51/203 (25%)
Query: 569 VPPQEA-PGYGADVLRLWV-------SSVDYTGDVMIGPQVLRQMSDIYRKLRGTLRYLL 620
V P+EA YGAD +RL++ ++++ + G R L+
Sbjct: 588 VDPEEAVEKYGADTVRLYIMFAAPPEQDLEWSESGVEG---------ARRFLQ------- 631
Query: 621 GNLHDWRVGNSISYDDLPMIDQ--YALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVD 678
+ + + + +Q + L +K + E +E+ Q F I +
Sbjct: 632 -RVWNLVKEHLEKLVEELTKEQGKEDRWLLHRTIKKVTEDFEARQTFNT--AIAALME-- 686
Query: 679 LSNFYFDVAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAY 738
L N + K T G R + +T VR++AP PH+AE++W+ L
Sbjct: 687 LLN---ALRKYLRRTEGDRKVLREALET--------WVRLLAPFAPHIAEELWEEL---- 731
Query: 739 TLEDGSAAEFVFESKWPVLDEKW 761
FV + WP DE+
Sbjct: 732 -----GNEGFVSNAPWPEPDEEA 749
Score = 42.7 bits (101), Expect = 8e-04
Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 12/96 (12%)
Query: 433 VHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPILSPVDDEGKFTE 492
++PV+ + PV I +Y+ E GTG V P H + D + KY LPI + EG +
Sbjct: 316 INPVNGEKIPVWIA-NYVLMEYGTGAVMGVPAHDERDLEFATKYKLPIKKVIMPEGTVGK 374
Query: 493 EA----------GKFSGLDVLGDGNVAVVKYLDEQM 518
+ G GLD + V + L ++
Sbjct: 375 KVYEGEGVLINSGGLDGLDY-EEAKVKIRCGLVKRG 409
>gnl|CDD|215509 PLN02943, PLN02943, aminoacyl-tRNA ligase.
Length = 958
Score = 104 bits (261), Expect = 6e-23
Identities = 73/241 (30%), Positives = 119/241 (49%), Gaps = 26/241 (10%)
Query: 127 EPEIHKLWDDHQVFLRVADKNDGENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQ 186
E I+ W+ F D+ G+ FV+ PP G+LHMGHA+ L+DI+ RY ++
Sbjct: 66 EERIYNWWESQGYFKPNFDRG-GDPFVIPMPPPNVTGSLHMGHAMFVTLEDIMVRYNRMK 124
Query: 187 NYKVRYVPGWDCHGLPIELKVLQSLDEDAKK--DLTPSKLRAKAAKFAK---ATVKAQMA 241
++PG D G+ +L V + L + K DL + + ++ + T+ Q+
Sbjct: 125 GRPTLWIPGTDHAGIATQLVVEKMLASEGIKRTDLGRDEFTKRVWEWKEKYGGTITNQI- 183
Query: 242 SFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAEAE 301
KR G DW+ TLD + A +E F ++ +G IY+G V+WSP+ +TA+++ E
Sbjct: 184 --KRLGASCDWSRERFTLDEQLSRAVVEAFVRLHEKGLIYQGSYMVNWSPNLQTAVSDLE 241
Query: 302 LEYPE--GHVSRSIYAVFRMVSAPPSTSGLLNEFLPDLGLAVWTTTPWTVPANAAVAVNA 359
+EY E G + Y V +G +FL + TT P T+ + A+AVN
Sbjct: 242 VEYSEEPGTLYYIKYRV----------AGGSEDFLT-----IATTRPETLFGDVAIAVNP 286
Query: 360 K 360
+
Sbjct: 287 E 287
Score = 60.7 bits (147), Expect = 2e-09
Identities = 46/191 (24%), Positives = 86/191 (45%), Gaps = 21/191 (10%)
Query: 577 YGADVLRLWVSSVDYTGDVMIGPQVLRQMSDIYRKLRGTLRYLLGNLHD------WRVGN 630
+G D LR ++ D+ + + L KL +++L NL W
Sbjct: 601 FGTDALRFTLALGTAGQDLNLSTERLTSNKAFTNKLWNAGKFVLQNLPSQSDTSAWEHIL 660
Query: 631 SISYDD------LPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYF 684
+ +D LP+ + + + +L ++ ++ SY+ Y F + + I F D +++Y
Sbjct: 661 ACKFDKEESLLSLPLPECWVVSKLHELIDSVTTSYDKYFFGDVGREIYDFFWSDFADWYI 720
Query: 685 DVAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGS 744
+ +K RLY G S R+ Q VL +I++++ P +P + E++WQ LP+
Sbjct: 721 EASKTRLYHSGDNSALSRA-QAVLLYVFENILKLLHPFMPFVTEELWQALPY-------- 771
Query: 745 AAEFVFESKWP 755
E + S WP
Sbjct: 772 RKEALIVSPWP 782
Score = 52.3 bits (125), Expect = 9e-07
Identities = 36/134 (26%), Positives = 67/134 (50%), Gaps = 8/134 (5%)
Query: 439 RQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPILSPVDDEGKFTEEAGKFS 498
R P+ I Y+ + GTG++ +PGH DY+ + K GLPIL+ ++ +G E AG +
Sbjct: 307 RHVPI-IADRYVDKDFGTGVLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEVAGLY- 364
Query: 499 GLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTKKPTIFRATEQWFASVEGFRQA 558
+ + L+E + +EP+ + P R + ++QWF ++E +
Sbjct: 365 ----WFEAREKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEK 420
Query: 559 AMDAI--GQVKWVP 570
A+ A+ G++ +P
Sbjct: 421 ALKAVENGELTIIP 434
>gnl|CDD|173906 cd00812, LeuRS_core, catalytic core domain of leucyl-tRNA
synthetases. Leucyl tRNA synthetase (LeuRS) catalytic
core domain. This class I enzyme is a monomer which
aminoacylates the 2'-OH of the nucleotide at the 3' of
the appropriate tRNA. The core domain is based on the
Rossman fold and is responsible for the ATP-dependent
formation of the enzyme bound aminoacyl-adenylate. It
contains the characteristic class I HIGH and KMSKS
motifs, which are involved in ATP binding. In Aquifex
aeolicus, the gene encoding LeuRS is split in two, just
before the KMSKS motif. Consequently, LeuRS is a
heterodimer, which likely superimposes with the LeuRS
monomer found in most other organisms. LeuRS has an
insertion in the core domain, which is subject to both
deletions and rearrangements and thus differs between
prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This
editing region hydrolyzes mischarged cognate tRNAs and
thus prevents the incorporation of chemically similar
amino acids.
Length = 314
Score = 86.5 bits (215), Expect = 2e-18
Identities = 40/131 (30%), Positives = 59/131 (45%), Gaps = 14/131 (10%)
Query: 159 PYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKD 218
PY +G LH+GH + DII RYK +Q Y V + G+D GLP E +
Sbjct: 9 PYPSGALHVGHVRTYTIGDIIARYKRMQGYNVLFPMGFDAFGLPAE----NAAI------ 58
Query: 219 LTPSKLRAKAAKFAKATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQG 278
K+ + + +K KR G DW + T DPEY +F ++ +G
Sbjct: 59 ----KIGRDPEDWTEYNIKKMKEQLKRMGFSYDWRREFTTCDPEYYKFTQWLFLKLYEKG 114
Query: 279 YIYRGKKPVHW 289
Y+ + PV+W
Sbjct: 115 LAYKKEAPVNW 125
>gnl|CDD|178177 PLN02563, PLN02563, aminoacyl-tRNA ligase.
Length = 963
Score = 89.9 bits (223), Expect = 2e-18
Identities = 122/528 (23%), Positives = 188/528 (35%), Gaps = 108/528 (20%)
Query: 26 QSSSYRVLSRRTCSSFRKKASVNLFDSRGSSSLKFLSFLNVTCYSICSGDEFCSSSKRRS 85
S R T V+ + S+S F S G S S R
Sbjct: 8 PPPSASSAFRFTSLRLSLFLVVSSAQTPASASSYF-------RRSRRGGV---SRSLTRR 57
Query: 86 RGPVMAAKKAAEGEKKEEGRYKHTVDLPKTTFGMRANALVREPEIHKLWDDHQVFLRVAD 145
+A + + + + P EP+ + W++++ F R D
Sbjct: 58 AFAAPSALTSTTAKTTPAAKRAY----PFHEI---------EPKWQRYWEENRTF-RTPD 103
Query: 146 KNDGEN---FVLHDGPPYANG-NLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGL 201
D +VL D PY +G LH+GH DI+ RYK +Q Y V + GWD GL
Sbjct: 104 DVDTSKPKFYVL-DMFPYPSGAGLHVGHPEGYTATDILARYKRMQGYNVLHPMGWDAFGL 162
Query: 202 PIELKVLQSLDEDAKKDLTPSKLRAKAAKFAKATVKAQMASFKR----YGVWADWNNPYL 257
P E +++ K T +A F+ G DW+
Sbjct: 163 PAEQYAIET------------------GTHPKITTLKNIARFRSQLKSLGFSYDWDREIS 204
Query: 258 TLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAEAELEYPEGHVSRSIYAVF 317
T +PEY +F Q+ +G Y+ + PV+W P+ T LA E+ +G R + V
Sbjct: 205 TTEPEYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEV--VDGLSERGGHPVI 262
Query: 318 RMVSAPPSTSGLL------NEFLPDLGLAVWTTTPWTVPAN-AAVAVNAKLQYAVVEIQS 370
R P +L + L DL W + + N + A+L ++V
Sbjct: 263 RK----PMRQWMLKITAYADRLLEDLDDLDWPESIKEMQRNWIGRSEGAELDFSV----- 313
Query: 371 LLEGDSAAPANK----KSRPGNVLKDQKKVFIIVASD--LVP---TLEAKWGTKLVIKKT 421
L+G+ K +RP + +++VA + L+ T E K + +
Sbjct: 314 -LDGEGKERDEKITVYTTRPDTLF---GATYLVVAPEHPLLSSLTTAEQKEAVEEYVDAA 369
Query: 422 LAGSDLE-------------NCRYVHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQE 468
SDLE ++P P+ + DY+ GTG + P H
Sbjct: 370 SRKSDLERTELQKEKTGVFTGSYAINPATGEAIPIWV-ADYVLGSYGTGAIMAVPAHDTR 428
Query: 469 DYVTSLKYGLPILSPV-------DDEGKFTEEAGKF-----SGLDVLG 504
D+ + K+ LPI V DD K G SGLD+ G
Sbjct: 429 DFEFAQKFDLPIKWVVKPADGNEDDAEKAYTGEGVIVNSSSSGLDING 476
>gnl|CDD|232956 TIGR00396, leuS_bact, leucyl-tRNA synthetase, eubacterial and
mitochondrial family. The leucyl-tRNA synthetases
belong to two families so broadly different that they
are represented by separate models. This model includes
both eubacterial and mitochondrial leucyl-tRNA
synthetases. It generates higher scores for some
valyl-tRNA synthetases than for any archaeal or
eukaryotic cytosolic leucyl-tRNA synthetase. Note that
the enzyme from Aquifex aeolicus is split into alpha and
beta chains; neither chain is long enough to score above
the trusted cutoff, but the alpha chain scores well
above the noise cutoff. The beta chain must be found by
a model and search designed for partial length matches
[Protein synthesis, tRNA aminoacylation].
Length = 842
Score = 86.0 bits (213), Expect = 4e-17
Identities = 51/192 (26%), Positives = 85/192 (44%), Gaps = 16/192 (8%)
Query: 127 EPEIHKLWDDHQVFLRVADKNDGENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQ 186
E + + WD+++ F +V D + + + PY +G LHMGH N + D+++RY ++
Sbjct: 7 EEKWQQKWDENKTF-KVTDDSSKPKYYILSMFPYPSGALHMGHVRNYTITDVLSRYYRMK 65
Query: 187 NYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKAAKFAKATVKAQMASFKRY 246
Y V + GWD GLP E ++ T A K Q+ +
Sbjct: 66 GYNVLHPIGWDAFGLPAENAAIKR--GIHPAKWT----YENIANM-----KKQLQAL--- 111
Query: 247 GVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAEAELEYPE 306
G DW+ T DPEY +F ++ +G Y + V+W P+ T LA +++ +
Sbjct: 112 GFSYDWDREIATCDPEYYKWTQWIFLELFEKGLAYVKEADVNWCPNDGTVLANEQVD-SD 170
Query: 307 GHVSRSIYAVFR 318
G R V +
Sbjct: 171 GRSWRGDTPVEK 182
Score = 45.9 bits (109), Expect = 8e-05
Identities = 28/97 (28%), Positives = 50/97 (51%), Gaps = 14/97 (14%)
Query: 433 VHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPILSPVDDEGK--- 489
+HP+ + P+ + +Y+ E GTG V P H + D+ + KYGLPI +D K
Sbjct: 307 IHPLTGEKIPIWVA-NYVLMEYGTGAVMGVPAHDERDFEFAQKYGLPIKPVIDPAEKDLS 365
Query: 490 ----FTEE-----AGKFSGLDVLGDGNVAVVKYLDEQ 517
+TE+ +G+F+GL+ A++ L+++
Sbjct: 366 LTAAYTEDGVLVNSGEFNGLNSSE-ARNAIIDMLEKE 401
Score = 39.0 bits (91), Expect = 0.012
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 8/54 (14%)
Query: 707 VLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAAEFVFESKWPVLDEK 760
++ +L V V++P PHLAE++W+ L GS + +KWPV+DE
Sbjct: 730 LMLEYLKGFVTVLSPFAPHLAEELWEKL--------GSEPFIIDNAKWPVVDET 775
>gnl|CDD|223221 COG0143, MetG, Methionyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 558
Score = 84.3 bits (209), Expect = 8e-17
Identities = 42/146 (28%), Positives = 62/146 (42%), Gaps = 16/146 (10%)
Query: 158 PPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKK 217
PY NG H+GH + D+ RY L+ Y+V ++ G D HG IELK K+
Sbjct: 13 LPYPNGPPHLGHLYTYLAADVYARYLRLRGYEVFFLTGTDEHGTKIELKA-------EKE 65
Query: 218 DLTPSKLRAKAAKFAKATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQ 277
+TP +L K + K KA SF + T PE++ E F ++
Sbjct: 66 GITPQELVDKNHEEFKELFKALNISFDNFI---------RTTSPEHKELVQEFFLKLYEN 116
Query: 278 GYIYRGKKPVHWSPSSRTALAEAELE 303
G IY + + S L + +E
Sbjct: 117 GDIYLREYEGLYCVSCERFLPDRYVE 142
Score = 41.1 bits (97), Expect = 0.002
Identities = 32/154 (20%), Positives = 52/154 (33%), Gaps = 30/154 (19%)
Query: 647 QLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFD------VAKDRLYTGGTTSFT 700
++ + E+ E Y+F K + I +N Y D +AK+
Sbjct: 425 LAREALEAVAEAMEKYEFRKALEEIMAL--ASRANKYIDEQAPWKLAKED---------K 473
Query: 701 RRSCQTVLSAHLLSIVRVIA----PILPHLAEDVWQNLPFAYTLEDGSAAEFVFESKWPV 756
R TVL L +VRV+A P +P AE +W L + A F +
Sbjct: 474 RERLATVL-YLALELVRVLAILLYPFMPETAEKIWDQLGL-----EEDARNFTWLGARQP 527
Query: 757 LDEKWRTFPVGEIYFWGKILEVIVVVTYLNETEG 790
L + E F +E + + +
Sbjct: 528 LLPGHK-LGPPEPLF--PRIEEEAIEELIEALKE 558
>gnl|CDD|240411 PTZ00419, PTZ00419, valyl-tRNA synthetase-like protein;
Provisional.
Length = 995
Score = 83.5 bits (207), Expect = 2e-16
Identities = 65/251 (25%), Positives = 108/251 (43%), Gaps = 35/251 (13%)
Query: 132 KLWDDHQVFL---RVADKNDGENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNY 188
+ W+ F N G+ FV+ PP G LH+GHAL ++D + RY ++
Sbjct: 39 EWWEKSGFFKPAEDAKSLNSGKKFVIVLPPPNVTGYLHIGHALTGAIQDSLIRYHRMKGD 98
Query: 189 KVRYVPGWDCHGLP----IELKVLQSLDEDAKK--DLTPSKLRAKAAKFAK---ATVKAQ 239
+ +VPG D G+ +E K+++ E+ K DL + K ++ + Q
Sbjct: 99 ETLWVPGTDHAGIATQVVVEKKLMK---EENKTRHDLGREEFLKKVWEWKDKHGNNICNQ 155
Query: 240 MASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAE 299
+R G DW+ T+D + A E F ++ G IYR + V+W +TA+++
Sbjct: 156 ---LRRLGSSLDWSREVFTMDEQRSKAVKEAFVRLYEDGLIYRDTRLVNWCCYLKTAISD 212
Query: 300 AELEYPE----------GHVSRSIYAVFRMVSAPPSTSGLLNEFLPDLGLAVWTTTPWTV 349
E+E+ E G+ + V + P SG + V TT T+
Sbjct: 213 IEVEFEEIEKPTKITIPGYDKKVEVGVLWHFAYPLEDSG-------QEEIVVATTRIETM 265
Query: 350 PANAAVAVNAK 360
+ AVAV+ K
Sbjct: 266 LGDVAVAVHPK 276
Score = 65.0 bits (159), Expect = 1e-10
Identities = 36/152 (23%), Positives = 71/152 (46%), Gaps = 6/152 (3%)
Query: 425 SDLENCRYVHP-VDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPILSP 483
L +HP + +R+ P++ + + E GTG V P H DY + ++ LP ++
Sbjct: 281 KKLHGKELIHPFIPDRKIPIIADDELVDMEFGTGAVKITPAHDPNDYEIAKRHNLPFINI 340
Query: 484 VDDEGKFTEEAGKFSGLDVLGDGNVAVVKYLDEQMSLIME-EPYEHKYPYDWRTKKPTIF 542
+GK E G+F+G+ D + + L ++M L+ + P + P R+
Sbjct: 341 FTLDGKINENGGEFAGMHRF-DCRRKIEEEL-KEMGLLRDKVPNPMRLPRCSRSGDIVEP 398
Query: 543 RATEQWFASVEGFRQAAMDAI--GQVKWVPPQ 572
QW+ + + + A++A+ G++K +P
Sbjct: 399 MLIPQWYVNCKDMAKRAVEAVRNGELKIIPSS 430
Score = 60.0 bits (146), Expect = 3e-09
Identities = 45/187 (24%), Positives = 83/187 (44%), Gaps = 18/187 (9%)
Query: 562 AIGQVKWVPPQEAPGYGADVLRLWVSSVDYTGDVMIGPQVLRQMSDI--YR----KLRGT 615
AI K P P G D LR + + YT G + ++ + YR KL
Sbjct: 625 AIELQKKEFPNGIPECGTDALRFGLLA--YTQQ---GRNINLDINRVVGYRHFCNKLWNA 679
Query: 616 LRYLLGNLHDWRVGNSISY------DDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQ 669
+++ L L + + + LP D++ L +L +K + E ++ Y F + Q
Sbjct: 680 VKFALMKLLKDFNLPNSTLFKPNNVESLPWEDKWILHRLNVAIKEVTEGFKEYDFSEATQ 739
Query: 670 IIQRFIIVDLSNFYFDVAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAED 729
F + +L + Y ++ K RL + + ++ Q VL L +R++ P++P + E+
Sbjct: 740 ATYNFWLYELCDVYLELIKPRL-SKQSDGERKQHAQDVLHTVLDIGLRLLHPMMPFITEE 798
Query: 730 VWQNLPF 736
++Q LP
Sbjct: 799 LYQRLPN 805
>gnl|CDD|220185 pfam09334, tRNA-synt_1g, tRNA synthetases class I (M). This family
includes methionyl tRNA synthetases.
Length = 388
Score = 80.8 bits (200), Expect = 4e-16
Identities = 43/147 (29%), Positives = 60/147 (40%), Gaps = 20/147 (13%)
Query: 159 PYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKK- 217
PY NG H+GH I D+ RY L+ Y V +V G D HG IEL A+K
Sbjct: 8 PYVNGPPHIGHLYTTIPADVYARYLRLRGYDVLFVTGTDEHGTKIELA--------AEKE 59
Query: 218 DLTPSKLRAKAAKFAKATVKAQMASFKRYGVWADWNNPYLTLDPE-YEAAQIEVFGQMSL 276
+TP +L + + K K SF + T E Q E F ++
Sbjct: 60 GVTPQELVDRYHEEFKELFKKFNISFDDFI---------RTTSERHKELVQ-EFFLKLYE 109
Query: 277 QGYIYRGKKPVHWSPSSRTALAEAELE 303
+G IY G+ + S L + +E
Sbjct: 110 KGDIYEGEYEGWYCVSDERFLPDRYVE 136
>gnl|CDD|215214 PLN02381, PLN02381, valyl-tRNA synthetase.
Length = 1066
Score = 81.5 bits (201), Expect = 1e-15
Identities = 59/239 (24%), Positives = 104/239 (43%), Gaps = 22/239 (9%)
Query: 80 SSKRRSRGPVMAAKKAAEGEKKEEGRYKHTVDLPKTTFGMRA----------NALVREPE 129
+ + + K+ E E E+ +D P T FG + + E
Sbjct: 55 GTNVPKKSEKKSRKRDVEDENPED-----FID-PDTPFGQKKRLSSQMAKQYSPSAVEKS 108
Query: 130 IHKLWDDHQVFLRVADKNDGEN-FVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNY 188
+ W+ F AD + FV+ PP G LH+GHAL ++D I R+K + Y
Sbjct: 109 WYAWWEKSGYF--GADAKSSKPPFVIVLPPPNVTGALHIGHALTAAIEDTIIRWKRMSGY 166
Query: 189 KVRYVPGWDCHGLPIELKVLQSLDED---AKKDLTPSKLRAKAAKFAKATVKAQMASFKR 245
+VPG D G+ ++ V + L + + D+ + ++ K+ + +R
Sbjct: 167 NALWVPGVDHAGIATQVVVEKKLMRERHLTRHDIGREEFVSEVWKWKDEYGGTILNQLRR 226
Query: 246 YGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAEAELEY 304
G DW+ T+D + A E F ++ +G IYR + V+W + RTA+++ E++Y
Sbjct: 227 LGASLDWSRECFTMDEQRSKAVTEAFVRLYKEGLIYRDIRLVNWDCTLRTAISDVEVDY 285
Score = 43.3 bits (102), Expect = 5e-04
Identities = 39/166 (23%), Positives = 72/166 (43%), Gaps = 18/166 (10%)
Query: 433 VHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPILSPVDDEGKFTE 492
VHP + R+ P++ + GTG V P H D+ ++ L ++ D+GK
Sbjct: 356 VHPFNGRKLPIICDAILVDPNFGTGAVKITPAHDPNDFEVGKRHNLEFINIFTDDGKINS 415
Query: 493 EAG-KFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTK---KPTIFRATEQW 548
G +F+G+ AV++ L ++ + E + RT +P I QW
Sbjct: 416 NGGSEFAGMPRF-AAREAVIEALQKKGLYRGAKNNEMRLGLCSRTNDVVEPMI---KPQW 471
Query: 549 FASVEGFRQAAMDAIG-----QVKWVPPQEAPGYGADVLRLWVSSV 589
F + + A+DA +++++P Q Y A+ R W+ ++
Sbjct: 472 FVNCSSMAKQALDAAIDGENKKLEFIPKQ----YLAEWKR-WLENI 512
Score = 39.9 bits (93), Expect = 0.006
Identities = 42/197 (21%), Positives = 80/197 (40%), Gaps = 12/197 (6%)
Query: 571 PQEAPGYGADVLRLWVSSVDYTGDVMIGPQVLRQMSDIYR----KLRGTLRYLLGNL-HD 625
P G D LR + S D I +LR + YR KL +R+ + L D
Sbjct: 704 PNGIAECGTDALRFALVSYTAQSD-KINLDILRVVG--YRQWCNKLWNAVRFAMSKLGDD 760
Query: 626 WRVGNSISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFD 685
+ ++S + +P ++ L L + S ++Y+F + + + + +
Sbjct: 761 YTPPATLSVETMPFSCKWILSVLNKAISKTVSSLDAYEFSDAASTVYSWWQYQFCDVFIE 820
Query: 686 VAKDRLYTGGTT-SFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGS 744
K + R + Q L L + +R++ P +P + E++WQ LP +D +
Sbjct: 821 AIKPYFAGDNPEFASERAAAQDTLWICLDTGLRLLHPFMPFVTEELWQRLPQP---KDHT 877
Query: 745 AAEFVFESKWPVLDEKW 761
+ + S++P E W
Sbjct: 878 RKDSIMISEYPSAVEAW 894
>gnl|CDD|232957 TIGR00398, metG, methionyl-tRNA synthetase. The methionyl-tRNA
synthetase (metG) is a class I amino acyl-tRNA ligase.
This model appears to recognize the methionyl-tRNA
synthetase of every species, including eukaryotic
cytosolic and mitochondrial forms. The UPGMA difference
tree calculated after search and alignment according to
This model shows an unusual deep split between two
families of MetG. One family contains forms from the
Archaea, yeast cytosol, spirochetes, and E. coli, among
others. The other family includes forms from yeast
mitochondrion, Synechocystis sp., Bacillus subtilis, the
Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori.
The E. coli enzyme is homodimeric, although monomeric
forms can be prepared that are fully active. Activity of
this enzyme in bacteria includes aminoacylation of
fMet-tRNA with Met; subsequent formylation of the Met to
fMet is catalyzed by a separate enzyme. Note that the
protein from Aquifex aeolicus is split into an alpha
(large) and beta (small) subunit; this model does not
include the C-terminal region corresponding to the beta
chain [Protein synthesis, tRNA aminoacylation].
Length = 530
Score = 77.0 bits (190), Expect = 1e-14
Identities = 46/125 (36%), Positives = 61/125 (48%), Gaps = 16/125 (12%)
Query: 159 PYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKD 218
PYANG H+GHA IL D+ RYK L+ Y+V +V G D HG IELK Q +
Sbjct: 8 PYANGKPHLGHAYTTILADVYARYKRLRGYEVLFVCGTDEHGTKIELKAEQ-------EG 60
Query: 219 LTPSKLRAKAAKFAKATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQG 278
LTP +L K + K K SF R+ T D E++ ++F ++ G
Sbjct: 61 LTPKELVDKYHEEFKDDWKWLNISFDRFI---------RTTDEEHKEIVQKIFQKLKENG 111
Query: 279 YIYRG 283
YIY
Sbjct: 112 YIYEK 116
Score = 30.8 bits (70), Expect = 3.3
Identities = 23/95 (24%), Positives = 39/95 (41%), Gaps = 8/95 (8%)
Query: 647 QLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKD--RLYTGGTTSFTRRSC 704
+ ++ I E+ ES++F K + I + D N Y D K C
Sbjct: 418 LINEALEQIDEAIESFEFRKALREI--MKLADRGNKYIDENKPWELFKQSPRLKELLAVC 475
Query: 705 QTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYT 739
+ +LSI+ + PI+P L+E + + L F
Sbjct: 476 --SMLIRVLSIL--LYPIMPKLSEKILKFLNFELE 506
>gnl|CDD|173907 cd00814, MetRS_core, catalytic core domain of methioninyl-tRNA
synthetases. Methionine tRNA synthetase (MetRS)
catalytic core domain. This class I enzyme aminoacylates
the 2'-OH of the nucleotide at the 3' of the appropriate
tRNA. MetRS, which consists of the core domain and an
anti-codon binding domain, functions as a monomer.
However, in some species the anti-codon binding domain
is followed by an EMAP domain. In this case, MetRS
functions as a homodimer. The core domain is based on
the Rossman fold and is responsible for the
ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. It contains the characteristic
class I HIGH and KMSKS motifs, which are involved in ATP
binding. As a result of a deletion event, MetRS has a
significantly shorter core domain insertion than IleRS,
ValRS, and LeuR. Consequently, the MetRS insertion
lacks the editing function.
Length = 319
Score = 75.3 bits (186), Expect = 1e-14
Identities = 41/127 (32%), Positives = 56/127 (44%), Gaps = 18/127 (14%)
Query: 159 PYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKD 218
PY NG H+GH +L D+ RY+ L+ Y V +V G D HG IE K ++
Sbjct: 9 PYVNGVPHLGHLYGTVLADVFARYQRLRGYDVLFVTGTDEHGTKIEQKAE-------EEG 61
Query: 219 LTPSKLRAKAAKFAKATVKAQMASFKRYGVWADWNNPYLTLDPE-YEAAQIEVFGQMSLQ 277
+TP +L K + K K SF + T P E Q E F ++
Sbjct: 62 VTPQELCDKYHEIFKDLFKWLNISFDYFI---------RTTSPRHKEIVQ-EFFKKLYEN 111
Query: 278 GYIYRGK 284
GYIY G+
Sbjct: 112 GYIYEGE 118
>gnl|CDD|153415 cd07961, Anticodon_Ia_Ile_ABEc, Anticodon-binding domain of
archaeal, bacterial, and eukaryotic cytoplasmic
isoleucyl tRNA synthetases. This domain is found in
isoleucyl tRNA synthetases (IleRS), which belong to the
class Ia aminoacyl tRNA synthetases. It lies C-terminal
to the catalytic core domain, and recognizes and
specifically binds to the tRNA anticodon. This family
includes bacterial, archaeal, and eukaryotic cytoplasmic
members. IleRS catalyzes the transfer of isoleucine to
the 3'-end of its tRNA.
Length = 183
Score = 72.2 bits (178), Expect = 2e-14
Identities = 37/141 (26%), Positives = 68/141 (48%), Gaps = 7/141 (4%)
Query: 622 NLHDWRVGN-SISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLS 680
NL + G + L ++D++ L +L +++K + E E+Y + + + FI +L+
Sbjct: 29 NLDGFDPGKDDDAVASLNVLDRWILSRLNSLIKEVTEEMEAYDLYTAVRALLEFI-DELT 87
Query: 681 NFYFDVAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTL 740
N+Y + R + + T+ LL++ R++AP P + E+++QNL
Sbjct: 88 NWYIRRNRKRFWGEEGDDDKLAAYATLYEV-LLTLSRLMAPFTPFITEEIYQNL----RR 142
Query: 741 EDGSAAEFVFESKWPVLDEKW 761
E G A E V WP +DE
Sbjct: 143 ELGDAPESVHLLDWPEVDESL 163
>gnl|CDD|153416 cd07962, Anticodon_Ia_Val, Anticodon-binding domain of valyl tRNA
synthetases. This domain is found in valyl tRNA
synthetases (ValRS), which belong to the class Ia
aminoacyl tRNA synthetases. It lies C-terminal to the
catalytic core domain, and recognizes and specifically
binds to the tRNA anticodon. ValRS catalyzes the
transfer of valine to the 3'-end of its tRNA.
Length = 135
Score = 70.3 bits (173), Expect = 2e-14
Identities = 31/118 (26%), Positives = 61/118 (51%), Gaps = 3/118 (2%)
Query: 617 RYLLGNLHDWRVGNSISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFII 676
R++L NL D + L + D++ L +L V+ + E+ E+Y+F + + F
Sbjct: 21 RFVLMNLEDDDEPEEDP-ESLSLADRWILSRLNKTVEEVTEALENYRFSEAATALYEFFW 79
Query: 677 VDLSNFYFDVAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNL 734
D ++Y ++ K RLY +++ + L L +I+R++ P +P + E++WQ L
Sbjct: 80 NDFCDWYLELVKPRLYGEDEEE--KKAARATLYYVLETILRLLHPFMPFITEELWQRL 135
>gnl|CDD|232955 TIGR00395, leuS_arch, leucyl-tRNA synthetase, archaeal and
cytosolic family. The leucyl-tRNA synthetases belong to
two families so broadly different that they are
represented by separate models. This model includes both
archaeal and cytosolic eukaryotic leucyl-tRNA
synthetases; the eubacterial and mitochondrial forms
differ so substantially that some other tRNA ligases
score higher by this model than does any eubacterial
LeuS [Protein synthesis, tRNA aminoacylation].
Length = 938
Score = 76.0 bits (187), Expect = 5e-14
Identities = 77/356 (21%), Positives = 134/356 (37%), Gaps = 51/356 (14%)
Query: 127 EPEIHKLWDDHQVFLRVADKNDGENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQ 186
E + K W++ +F AD +D E F L PY NG +H GH + ++ R++ ++
Sbjct: 4 EKKWQKRWEEAHIF--EADPDDREKFFLTMAYPYLNGVMHAGHCRTFTIPEVSARFERMK 61
Query: 187 NYKVRYVPGWDCHGLPIE--LKVLQSLDEDAKKDLT--PSKLRAKAAKFAKATV------ 236
V + G+ G PI ++++ DE K+ T + R + KF
Sbjct: 62 GKNVLFPLGFHVTGTPILGLAELIKRRDELTIKNYTEVHAIPREELLKFTDPEYIVEYFS 121
Query: 237 KAQMASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTA 296
+ ++ K G DW + T DP Y+ ++ G I +G+ PV + P
Sbjct: 122 REAESACKSMGYSIDWRRSFKTTDPYYDRFIEWQMNKLKELGLIVKGEHPVRYCPKDGNP 181
Query: 297 LAEAELEYPEGHVSRSIYAVFRMVSAPPSTSGLLNEFLPDLGLAVWTTTPWTVPANAAVA 356
+ + +L EG V+ Y + + L + T P TV
Sbjct: 182 VEDHDLLSGEG-VTIVEYILIKFE---------LEDG--AFYFVAATLRPETVYGVTNCW 229
Query: 357 VNAKLQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFIIVASDLVPTLEAKWGTKL 416
VN + Y + E+ G +K L QK K
Sbjct: 230 VNPTITYVIAEV-----GGEKWITSK--EAFENLSYQKL-------------------KY 263
Query: 417 VIKKTLAGSDLENCRYVHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVT 472
+ + G + +PV + P ++ +++ T GTG+V + P H +DY+
Sbjct: 264 KPIEEVPGKQFIGKKVHNPVVGPEVP-ILPAEFVDTTKGTGVVMSVPAHAPDDYIA 318
Score = 47.1 bits (112), Expect = 4e-05
Identities = 38/187 (20%), Positives = 75/187 (40%), Gaps = 36/187 (19%)
Query: 577 YGADVLRLWV-SSVDYTGDVMIGPQVLRQMSDIYRKLRGTLRYLLGNLHDWRVGNSISYD 635
+GADV RL++ + + D + +L + + G S+
Sbjct: 638 FGADVARLYIADAAETVQDADWKESEVEGTILRLERLYEFAEEITKES-NLETGEETSF- 695
Query: 636 DLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRLYTGG 695
ID++ ++ +K E+ E++Q K + FD+ D +
Sbjct: 696 ----IDRWLESRMNAAIKETYEAMENFQTRKAVKYA-----------LFDLQADVDW--- 737
Query: 696 TTSFTRRS---CQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAAEFVFES 752
+ RR + VL+ +L + ++++AP PH AE++W+ + +G FV +
Sbjct: 738 ---YRRRGGVNHKDVLARYLETWIKLLAPFAPHFAEEMWEEVG-----NEG----FVSLA 785
Query: 753 KWPVLDE 759
K+P E
Sbjct: 786 KFPEASE 792
>gnl|CDD|234743 PRK00390, leuS, leucyl-tRNA synthetase; Validated.
Length = 805
Score = 73.6 bits (182), Expect = 2e-13
Identities = 60/205 (29%), Positives = 91/205 (44%), Gaps = 28/205 (13%)
Query: 119 MRANALVREPEIHKLWDDHQVFLRVADKNDGENFVLHDGPPYANGNLHMGHALNKILKDI 178
R N E + K W++++ F + + + + +VL D PY +G LHMGH N + D+
Sbjct: 3 ERYNPKEIEKKWQKYWEENKTF-KTTEDSSKKYYVL-DMFPYPSGGLHMGHVRNYTIGDV 60
Query: 179 INRYKLLQNYKVRYVPGWDCHGLP-----IELKVLQSLDEDAKKDLTPSKLRAKAAKFAK 233
I RYK +Q Y V + GWD GLP I+ + T +
Sbjct: 61 IARYKRMQGYNVLHPMGWDAFGLPAENAAIKTGT-------HPAEWTYENI--------- 104
Query: 234 ATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSS 293
A +K Q+ K G DW+ T DPEY +F ++ +G YR + PV+W P
Sbjct: 105 ANMKKQL---KSLGFSYDWSREIATCDPEYYKWTQWIFLKLYEKGLAYRKESPVNWCPVD 161
Query: 294 RTALAEAELEYPEGHVSRSIYAVFR 318
T LA ++ +G R V +
Sbjct: 162 GTVLANEQVI--DGRCWRCGAPVEK 184
Score = 55.9 bits (136), Expect = 7e-08
Identities = 33/98 (33%), Positives = 50/98 (51%), Gaps = 15/98 (15%)
Query: 433 VHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPI---LSPVDDEGK 489
+HP+ + PV I DY+ + GTG V P H Q D+ + KYGLPI + P D +
Sbjct: 309 IHPLTGEKIPVWIA-DYVLMDYGTGAVMAVPAHDQRDFEFAKKYGLPIKPVIEPGDGDED 367
Query: 490 FTEEA----------GKFSGLDVLGDGNVAVVKYLDEQ 517
+EEA G+ GLD + A++ +L+E+
Sbjct: 368 ISEEAYTGDGVLINSGELDGLDS-EEAKEAIIAWLEEK 404
Score = 46.6 bits (112), Expect = 5e-05
Identities = 27/121 (22%), Positives = 45/121 (37%), Gaps = 27/121 (22%)
Query: 641 DQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRLYTGGTTSFT 700
D+ +L +K + E E +F I + L N + ++
Sbjct: 646 DKELRRKLHKTIKKVTEDIERLRFNTA---IAALME--LVNALYKAEDEQD--------- 691
Query: 701 RRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAAEFVFESKWPVLDEK 760
+ VL L +VR++AP PHLAE++W+ L + + WP DE
Sbjct: 692 ----KAVLREALEILVRLLAPFAPHLAEELWEKL---------GHEGSIANAPWPTADEA 738
Query: 761 W 761
Sbjct: 739 A 739
>gnl|CDD|237012 PRK11893, PRK11893, methionyl-tRNA synthetase; Reviewed.
Length = 511
Score = 67.6 bits (166), Expect = 1e-11
Identities = 38/131 (29%), Positives = 59/131 (45%), Gaps = 24/131 (18%)
Query: 158 PPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKK 217
Y NG H+GHA + D++ R+K L+ Y V ++ G D HG K+ + +E
Sbjct: 9 IYYPNGKPHIGHAYTTLAADVLARFKRLRGYDVFFLTGTDEHG----QKIQRKAEE---A 61
Query: 218 DLTPSKLRAKAAKFAKATVKAQMASFKRYGVWADWNNPY----LTLDPEYEAAQIEVFGQ 273
++P + A+FKR +W N Y T DP ++ A E+F +
Sbjct: 62 GISP-----------QELADRNSAAFKR--LWEALNISYDDFIRTTDPRHKEAVQEIFQR 108
Query: 274 MSLQGYIYRGK 284
+ G IY GK
Sbjct: 109 LLANGDIYLGK 119
Score = 37.6 bits (88), Expect = 0.026
Identities = 38/182 (20%), Positives = 60/182 (32%), Gaps = 42/182 (23%)
Query: 577 YGADVLRLWV---SSVDYTGDVMIGPQVLRQMSDIYRKLRGTLRYLLGNL--------HD 625
YG D +R ++ GD ++ L LGNL
Sbjct: 317 YGVDAVRYFLLREIPFGQDGDF--------SREAFINRINADLANDLGNLAQRTLSMIAK 368
Query: 626 WRVGNSISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFD 685
G L D+ L +++ +R + ++ F K + I +V +N Y D
Sbjct: 369 NFDGKVPEPGALTEADEALLEAAAALLERVRAAMDNLAFDKALEAI--LALVRAANKYID 426
Query: 686 ------VAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIA----PILPHLAEDVWQNLP 735
+AK TVL LL ++R IA P++P LA + L
Sbjct: 427 EQAPWSLAKTD----------PERLATVLYT-LLEVLRGIAVLLQPVMPELAAKILDQLG 475
Query: 736 FA 737
Sbjct: 476 VE 477
>gnl|CDD|237029 PRK12268, PRK12268, methionyl-tRNA synthetase; Reviewed.
Length = 556
Score = 67.6 bits (166), Expect = 1e-11
Identities = 41/125 (32%), Positives = 58/125 (46%), Gaps = 19/125 (15%)
Query: 159 PYANGNLHMGHALNKILK-DIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKK 217
PYANG LH+GH L D+ RY+ L+ +V +V G D HG PIEL K+
Sbjct: 12 PYANGPLHLGHLAGSGLPADVFARYQRLKGNEVLFVSGSDEHGTPIELAA-------KKE 64
Query: 218 DLTPSKLRAKAAKFAKATVKAQMASFKRYGVWADWNNPYLTLDPE-YEAAQIEVFGQMSL 276
+TP + A + FK+ G+ ++ T P +E Q E F ++
Sbjct: 65 GVTP-------QELADKYHEEHKEDFKKLGI--SYDLFTRTTSPNHHEVVQ-EFFLKLYE 114
Query: 277 QGYIY 281
GYIY
Sbjct: 115 NGYIY 119
Score = 37.5 bits (88), Expect = 0.030
Identities = 29/118 (24%), Positives = 49/118 (41%), Gaps = 23/118 (19%)
Query: 627 RVGNSISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFD- 685
G + +L D+ + + E + K + E E+ +F K + I + +N Y D
Sbjct: 404 YFGGIVPPGELGDEDRELIAEAEALFKEVGELLEAGEFKKALEEIME--LAREANKYLDE 461
Query: 686 -----VAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIA----PILPHLAEDVWQNL 734
+AK R TVL L++VR++A P LP A+ +W+ L
Sbjct: 462 KAPWKLAKTD----------RERAATVLY-TALNLVRLLAVLLYPFLPFSAQKIWEML 508
>gnl|CDD|237028 PRK12267, PRK12267, methionyl-tRNA synthetase; Reviewed.
Length = 648
Score = 59.4 bits (145), Expect = 4e-09
Identities = 38/129 (29%), Positives = 54/129 (41%), Gaps = 24/129 (18%)
Query: 160 YANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDL 219
Y NG H+GHA I D + RYK LQ Y V ++ G D HG I+ K
Sbjct: 14 YPNGKPHIGHAYTTIAADALARYKRLQGYDVFFLTGTDEHGQKIQQAA-------EKAGK 66
Query: 220 TPSKLRAKAAKFAKATVKAQMASFKRYGVWADWNNPY----LTLDPEYEAAQIEVFGQMS 275
TP + V A FK +W + Y T D ++ ++F ++
Sbjct: 67 TP-----------QEYVDEISAGFK--ELWKKLDISYDKFIRTTDERHKKVVQKIFEKLY 113
Query: 276 LQGYIYRGK 284
QG IY+G+
Sbjct: 114 EQGDIYKGE 122
Score = 31.3 bits (72), Expect = 2.6
Identities = 26/105 (24%), Positives = 43/105 (40%), Gaps = 39/105 (37%)
Query: 649 ENIVKNIRESYESYQFFK----IFQIIQRFIIVDLSNFYFD------VAKD-----RLYT 693
E +KN E E QF + ++++I R +N Y D +AKD RL
Sbjct: 392 EETLKNYEELMEELQFSRALEEVWKLISR------ANKYIDETAPWVLAKDEGKKERL-- 443
Query: 694 GGTTSFTRRSCQTVLSAHLLSIVRVIA----PILPHLAEDVWQNL 734
TV+ HL +R +A P +P ++ +++ L
Sbjct: 444 -----------ATVM-YHLAESLRKVAVLLSPFMPETSKKIFEQL 476
>gnl|CDD|222257 pfam13603, tRNA-synt_1_2, Leucyl-tRNA synthetase, Domain 2. This
is a family of the conserved region of Leucine-tRNA
ligase or Leucyl-tRNA synthetase, EC:6.1.1.4.
Length = 178
Score = 55.2 bits (134), Expect = 1e-08
Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 17/97 (17%)
Query: 433 VHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPI---LSPVDDEGK 489
+HP+ + P+ I +++ + GTG V P H Q D+ + KY LPI + P D +
Sbjct: 83 IHPITGEKIPIWIA-NFVLMDYGTGAVMAVPAHDQRDFEFAKKYNLPIKQVIKPEDGDED 141
Query: 490 -------FTEEA-----GKFSGLDVLGDGNVAVVKYL 514
+TE+ G+F GLD + A+ + L
Sbjct: 142 DLIMEEAYTEKGILINSGEFDGLDS-EEAKEAIAEKL 177
>gnl|CDD|237049 PRK12300, leuS, leucyl-tRNA synthetase; Reviewed.
Length = 897
Score = 58.0 bits (141), Expect = 1e-08
Identities = 75/335 (22%), Positives = 126/335 (37%), Gaps = 86/335 (25%)
Query: 165 LHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPI-------------ELKVLQSL 211
LH+GH + D+I RYK ++ Y V + + G PI +++ +SL
Sbjct: 1 LHVGHGRTYTIGDVIARYKRMRGYNVLFPMAFHVTGTPILGIAERIARGDPETIELYKSL 60
Query: 212 DEDAKKDL----TPSKLRAKAAKFAKATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQ 267
+++L P + F++ + KR G DW + T DPEY
Sbjct: 61 YGIPEEELEKFKDPEYI---VEYFSEEAKED----MKRIGYSIDWRREFTTTDPEYSKFI 113
Query: 268 IEVFGQMSLQGYIYRGKKPVHWSPSSRTALAEAELEYPEGHVSRSIYAVFRMVSAPPSTS 327
F ++ +G I +G PV + P+ + + +L +G
Sbjct: 114 EWQFRKLKEKGLIVKGSHPVRYCPNDNNPVGDHDL--LDG------------EEPEI--- 156
Query: 328 GLLNEF-------LPDLGLAVWTTTPWTVPANAAVAVNAKLQYAVVEIQSLLEGD----S 376
E+ DL L T P T+ + VN Y E+ +G+ S
Sbjct: 157 ---VEYTLIKFEESEDLILPAATLRPETIFGVTNLWVNPDATYVKAEV----DGEKWIVS 209
Query: 377 AAPANKKSRPGNVLKDQKKVFIIVASDLVPTLEAKWGTKLVIKKTLAGSDLENCRYVHPV 436
A K L Q + I+ E K G++L+ KK +PV
Sbjct: 210 KEAAEK-------LSFQDRDVEIIE-------EIK-GSELIGKK-----------VKNPV 243
Query: 437 DNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYV 471
++ P ++ D++ ++GTG+V + P H DYV
Sbjct: 244 TGKEVP-ILPADFVDPDNGTGVVMSVPAHAPYDYV 277
Score = 53.7 bits (130), Expect = 3e-07
Identities = 47/188 (25%), Positives = 75/188 (39%), Gaps = 37/188 (19%)
Query: 577 YGADVLRLWVSSVDYTGDVMIGPQVLRQMSDIYRKLRGTLR--YLLGNLHDWRVGNSISY 634
YGADV+RL+++S + ++ Q +R L Y L +
Sbjct: 595 YGADVVRLYLTS---SAEL---LQDADWREKEVESVRRQLERFYELAK----ELIEIGGE 644
Query: 635 DDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKD-RLYT 693
++L ID++ L +L I+K E+ ES+Q Q ++++ D R Y
Sbjct: 645 EELRFIDKWLLSRLNRIIKETTEAMESFQTRDAVQEA-----------FYELLNDLRWYL 693
Query: 694 GGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAAEFVFESK 753
+ + VL +R++AP PHLAE++W L FV K
Sbjct: 694 RRVGEANNKVLREVLEI----WIRLLAPFTPHLAEELWHKL---------GGEGFVSLEK 740
Query: 754 WPVLDEKW 761
WP DE
Sbjct: 741 WPEPDESK 748
>gnl|CDD|234655 PRK00133, metG, methionyl-tRNA synthetase; Reviewed.
Length = 673
Score = 57.5 bits (140), Expect = 2e-08
Identities = 40/126 (31%), Positives = 62/126 (49%), Gaps = 20/126 (15%)
Query: 159 PYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKD 218
PYANG +H+GH + I DI RY+ ++ ++V +V D HG PI LK A+K+
Sbjct: 11 PYANGPIHLGHLVEYIQADIWVRYQRMRGHEVLFVCADDAHGTPIMLK--------AEKE 62
Query: 219 -LTPSKLRAKAAKFAKATVKAQMASFKRYGVWADWNNPYLTLDPE-YEAAQIEVFGQMSL 276
+TP A++ F +G+ ++N T E E AQ E++ ++
Sbjct: 63 GITP---EELIARYH----AEHKRDFAGFGI--SFDNYGSTHSEENRELAQ-EIYLKLKE 112
Query: 277 QGYIYR 282
GYIY
Sbjct: 113 NGYIYE 118
Score = 39.4 bits (93), Expect = 0.007
Identities = 27/103 (26%), Positives = 39/103 (37%), Gaps = 25/103 (24%)
Query: 640 IDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFD------VAKDRLYT 693
D L + E + I E+YE+ +F K + I + D +N Y D +AK
Sbjct: 410 ADPELLEEFEAAAEKIAEAYEAREFRKALREIMA--LADFANKYVDDNEPWKLAKQ---- 463
Query: 694 GGTTSFTRRSCQTVLS-----AHLLSIVRVIAPILPHLAEDVW 731
Q V S L+I + P+LP LAE
Sbjct: 464 ------DGERLQAVCSVGLNLFRALAIY--LKPVLPELAERAE 498
>gnl|CDD|153408 cd07375, Anticodon_Ia_like, Anticodon-binding domain of class Ia
aminoacyl tRNA synthetases and similar domains. This
domain is found in a variety of class Ia aminoacyl tRNA
synthetases, C-terminal to the catalytic core domain. It
recognizes and specifically binds to the anticodon of
the tRNA. Aminoacyl tRNA synthetases catalyze the
transfer of cognate amino acids to the 3'-end of their
tRNAs by specifically recognizing cognate from
non-cognate amino acids. Members include valyl-,
leucyl-, isoleucyl-, cysteinyl-, arginyl-, and
methionyl-tRNA synthethases. This superfamily also
includes a domain from MshC, an enzyme in the mycothiol
biosynthetic pathway.
Length = 117
Score = 47.1 bits (112), Expect = 2e-06
Identities = 26/122 (21%), Positives = 45/122 (36%), Gaps = 8/122 (6%)
Query: 602 LRQMSDIYRKLRGTLRYLLGNLHDWRVGNSISYDDLPMIDQYALFQLENIVKNIRESYES 661
L+Q +L L + L + L D+ L +L+ +K + E+
Sbjct: 4 LKQARAFLNRLYRLLSFFRKALGGTQPKWDNE--LLEEADRELLARLQEFIKRTTNALEA 61
Query: 662 YQFFKIFQIIQRFIIVDLSNFYFDVAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAP 721
Q + +F N+Y D K L T R + VL A L+ + +++AP
Sbjct: 62 LDPTTAVQELFKFTNEL--NWYLDELKPALQ----TEELREAVLAVLRAALVVLTKLLAP 115
Query: 722 IL 723
Sbjct: 116 FT 117
>gnl|CDD|153411 cd07957, Anticodon_Ia_Met, Anticodon-binding domain of methionyl
tRNA synthetases. This domain is found in methionyl
tRNA synthetases (MetRS), which belong to the class Ia
aminoacyl tRNA synthetases. It lies C-terminal to the
catalytic core domain, and recognizes and specifically
binds to the tRNA anticodon (CAU). MetRS catalyzes the
transfer of methionine to the 3'-end of its tRNA.
Length = 129
Score = 44.8 bits (107), Expect = 1e-05
Identities = 33/135 (24%), Positives = 54/135 (40%), Gaps = 34/135 (25%)
Query: 620 LGNL-HDWRVGNSIS---------YDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQ 669
LGNL + R N S + L D+ L + E +++ + E+ E +F K +
Sbjct: 9 LGNLVN--RTLNMASKYFGGVVPEFGGLTEEDEELLEEAEELLEEVAEAMEELEFRKALE 66
Query: 670 IIQRFIIVDLSNFYFD------VAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIA--- 720
I + +N Y D +AK+ TVL LL ++R++A
Sbjct: 67 EIME--LARAANKYIDETAPWKLAKEE---------DPERLATVLY-VLLELLRILAILL 114
Query: 721 -PILPHLAEDVWQNL 734
P +P AE + L
Sbjct: 115 SPFMPETAEKILDQL 129
>gnl|CDD|177869 PLN02224, PLN02224, methionine-tRNA ligase.
Length = 616
Score = 43.9 bits (103), Expect = 3e-04
Identities = 37/141 (26%), Positives = 53/141 (37%), Gaps = 24/141 (17%)
Query: 147 NDGENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELK 206
++ + FVL Y N HMG A I D I R++ L KV ++ G D HG I
Sbjct: 66 DEADTFVLTTPLYYVNAPPHMGSAYTTIAADSIARFQRLLGKKVIFITGTDEHGEKIA-- 123
Query: 207 VLQSLDEDAKKDLTPSKLRAKAAKFAKATVKAQMASFKRYGVWADWNNPY----LTLDPE 262
+ AA + S +W D + Y T DP+
Sbjct: 124 ------------------TSAAANGRNPPEHCDIISQSYRTLWKDLDIAYDKFIRTTDPK 165
Query: 263 YEAAQIEVFGQMSLQGYIYRG 283
+EA E + ++ G IYR
Sbjct: 166 HEAIVKEFYARVFANGDIYRA 186
>gnl|CDD|173901 cd00802, class_I_aaRS_core, catalytic core domain of class I amino
acyl-tRNA synthetase. Class I amino acyl-tRNA
synthetase (aaRS) catalytic core domain. These enzymes
are mostly monomers which aminoacylate the 2'-OH of the
nucleotide at the 3' of the appropriate tRNA. The core
domain is based on the Rossman fold and is responsible
for the ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. It contains the characteristic
class I HIGH and KMSKS motifs, which are involved in ATP
binding.
Length = 143
Score = 41.3 bits (97), Expect = 3e-04
Identities = 20/96 (20%), Positives = 28/96 (29%), Gaps = 19/96 (19%)
Query: 158 PPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKK 217
NG LH+GH + D + + YKVR + D G I
Sbjct: 5 GITPNGYLHIGHLRTIVTFDFLAQAYRKLGYKVRCIALIDDAGGLIG------------- 51
Query: 218 DLTPSKLRAKAAKFAKATVKAQMASFKR-YGVWADW 252
K + AKA V+ + K
Sbjct: 52 -----DPANKKGENAKAFVERWIERIKEDVEYMFLQ 82
>gnl|CDD|215518 PLN02959, PLN02959, aminoacyl-tRNA ligase.
Length = 1084
Score = 42.4 bits (100), Expect = 0.001
Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 7/82 (8%)
Query: 127 EPEIHKLWDDHQVFLRVADKN---DGENFVLHDGPPYANGNLHMGHA--LNKILKDIINR 181
E + K W++ +VF A GE F + PY NG LH+GHA L+K+ +
Sbjct: 19 EVAVQKWWEEEKVFEAEAGDEPPKPGEKFFGNFPYPYMNGLLHLGHAFSLSKL--EFAAA 76
Query: 182 YKLLQNYKVRYVPGWDCHGLPI 203
Y L+ V + C G+PI
Sbjct: 77 YHRLRGANVLLPFAFHCTGMPI 98
Score = 33.5 bits (77), Expect = 0.54
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 8/46 (17%)
Query: 714 SIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAAEFVFESKWPVLDE 759
R+I PI PH AE VW+ + ++G F + WPV E
Sbjct: 857 VQTRLITPICPHYAEHVWREI----LKKEG----FAVTAGWPVAGE 894
>gnl|CDD|153413 cd07959, Anticodon_Ia_Leu_AEc, Anticodon-binding domain of archaeal
and eukaryotic cytoplasmic leucyl tRNA synthetases.
This domain is found in leucyl tRNA synthetases (LeuRS),
which belong to the class Ia aminoacyl tRNA synthetases.
It lies C-terminal to the catalytic core domain. In
contrast to other class Ia enzymes, the anticodon is not
used as an identity element in LeuRS (with exceptions
such as Saccharomyces cerevisiae and some other
eukaryotes). No anticodon-binding site can be defined
for this family, which includes archaeal and eukaryotic
cytoplasmic members. LeuRS catalyzes the transfer of
leucine to the 3'-end of its tRNA.
Length = 117
Score = 38.7 bits (91), Expect = 0.002
Identities = 25/111 (22%), Positives = 46/111 (41%), Gaps = 23/111 (20%)
Query: 629 GNSISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAK 688
++L ID++ L +L ++K E+YE+ QF + + +++
Sbjct: 25 ETEGELEELTFIDRWLLSRLNRLIKETTEAYENMQFREALKEG-----------LYELQN 73
Query: 689 DRLYTGGTTSFTRRSCQTVLSAHLLS-----IVRVIAPILPHLAEDVWQNL 734
D + R ++ LL R++AP PHLAE++W L
Sbjct: 74 DL-------DWYRERGGAGMNKDLLRRFIEVWTRLLAPFAPHLAEEIWHEL 117
>gnl|CDD|153412 cd07958, Anticodon_Ia_Leu_BEm, Anticodon-binding domain of
bacterial and eukaryotic mitochondrial leucyl tRNA
synthetases. This domain is found in leucyl tRNA
synthetases (LeuRS), which belong to the class Ia
aminoacyl tRNA synthetases. It lies C-terminal to the
catalytic core domain. In contrast to other class Ia
enzymes, the anticodon is not used as an identity
element in LeuRS (with exceptions such as Saccharomyces
cerevisiae and some other eukaryotes). No
anticodon-binding site can be defined for this family,
which includes bacterial and eukaryotic mitochondrial
members, as well as LeuRS from the archaeal
Halobacteria. LeuRS catalyzes the transfer of leucine to
the 3'-end of its tRNA.
Length = 117
Score = 37.2 bits (87), Expect = 0.005
Identities = 27/128 (21%), Positives = 47/128 (36%), Gaps = 21/128 (16%)
Query: 612 LRGTLRYL-----LGNLHDWRVGNSISYDDLPMIDQYALFQLENIVKNIRESYESYQFFK 666
+ G R+L L + + +L D+ +L +K + E E +F
Sbjct: 6 VEGAYRFLNRVWRLVTELAEALAAPAAAAELSEEDKELRRKLHKTIKKVTEDIERLRFNT 65
Query: 667 IFQIIQRFIIVDLSNFYFDVAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHL 726
I + L N + K VL L ++V ++AP PH+
Sbjct: 66 A---IAALME--LVNALYKYKKKD-----------AQHAAVLREALETLVLLLAPFAPHI 109
Query: 727 AEDVWQNL 734
AE++W+ L
Sbjct: 110 AEELWEEL 117
>gnl|CDD|216482 pfam01406, tRNA-synt_1e, tRNA synthetases class I (C) catalytic
domain. This family includes only cysteinyl tRNA
synthetases.
Length = 301
Score = 35.8 bits (83), Expect = 0.072
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 165 LHMGHALNKILKDIINRYKLLQNYKVRYV 193
H+GHA + + D++ RY Y V++V
Sbjct: 23 SHIGHARSAVAFDVLRRYLQALGYDVQFV 51
>gnl|CDD|173899 cd00672, CysRS_core, catalytic core domain of cysteinyl tRNA
synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic
core domain. This class I enzyme is a monomer which
aminoacylates the 2'-OH of the nucleotide at the 3' of
the appropriate tRNA. The core domain is based on the
Rossman fold and is responsible for the ATP-dependent
formation of the enzyme bound aminoacyl-adenylate. It
contains the characteristic class I HIGH and KMSKS
motifs, which are involved in ATP binding.
Length = 213
Score = 34.9 bits (81), Expect = 0.10
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 166 HMGHALNKILKDIINRYKLLQNYKVRYV 193
H+GHA ++ D++ RY YKVRYV
Sbjct: 35 HIGHARTYVVFDVLRRYLEDLGYKVRYV 62
>gnl|CDD|232974 TIGR00435, cysS, cysteinyl-tRNA synthetase. This model finds the
cysteinyl-tRNA synthetase from most but not from all
species. The enzyme from one archaeal species,
Archaeoglobus fulgidus, is found but the equivalent
enzymes from some other Archaea, including Methanococcus
jannaschii, are not found, although biochemical evidence
suggests that tRNA(Cys) in these species are charged
directly with Cys rather than through a misacylation and
correction pathway as for tRNA(Gln) [Protein synthesis,
tRNA aminoacylation].
Length = 464
Score = 33.9 bits (78), Expect = 0.31
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 165 LHMGHALNKILKDIINRYKLLQNYKVRYV 193
H+GHA I+ D++ RY YKV+YV
Sbjct: 35 CHIGHARTAIVFDVLRRYLRYLGYKVQYV 63
>gnl|CDD|223293 COG0215, CysS, Cysteinyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 464
Score = 33.4 bits (77), Expect = 0.52
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 166 HMGHALNKILKDIINRYKLLQNYKVRYV 193
H+GHA ++ D++ RY YKV YV
Sbjct: 37 HIGHARTYVVFDVLRRYLRYLGYKVTYV 64
>gnl|CDD|240402 PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Provisional.
Length = 651
Score = 31.9 bits (73), Expect = 1.3
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 13/55 (23%)
Query: 150 ENFVLHDGPP---YANG-----NLHMGHALNKILKDIINRYKLLQNY---KVRYV 193
FV +G Y G + H+GHA + DII R +L++Y V YV
Sbjct: 51 VEFVPQNGRQVRWYTCGPTVYDSSHLGHARTYVTFDIIRR--ILEDYFGYDVFYV 103
>gnl|CDD|224860 COG1949, Orn, Oligoribonuclease (3'->5' exoribonuclease) [RNA
processing and modification].
Length = 184
Score = 31.2 bits (71), Expect = 1.4
Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 11/79 (13%)
Query: 498 SGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTKKPTIFRATEQWFASVEGFRQ 557
+ L++L +G V + DEQ++ M+ +W T+ TE+ AS +
Sbjct: 35 ANLNILAEGPVIAIHQSDEQLAK-MD---------EWNTETHGRSGLTERVKASTVTEAE 84
Query: 558 AAMDAIGQVK-WVPPQEAP 575
A + +K WVP +P
Sbjct: 85 AEAQTLDFLKKWVPKGVSP 103
>gnl|CDD|234403 TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target.
Members of this protein family include secretion targets
for the two main variants of type VII secretion systems
(T7SS), one found in the Actinobacteria, one found in
the Firmicutes. This model was derived through iteration
from pfam06013. The best characterized member of this
family is ESAT-6 from Mycobacterium tuberculosis.
Members of this family usually are ~100 amino acids in
length but occasionally have a long C-terminal
extension.
Length = 90
Score = 29.5 bits (67), Expect = 1.6
Identities = 14/82 (17%), Positives = 31/82 (37%), Gaps = 15/82 (18%)
Query: 595 VMIGPQVLRQMSDIYRKLRGTLRYLLGNLH--------DWRVGNSISYDDL-----PMID 641
+ + P+ LRQ + + K L+ LL L W + ++ P +
Sbjct: 2 IKVDPEELRQAAARFGKTAQELQQLLQRLRSEIDALQGTWEGAAADAFQAEFQQWDPAAE 61
Query: 642 QY--ALFQLENIVKNIRESYES 661
+ AL ++ ++ + +E
Sbjct: 62 RLINALQEISEALRQAADKFEQ 83
>gnl|CDD|165432 PHA03161, PHA03161, hypothetical protein; Provisional.
Length = 150
Score = 30.5 bits (68), Expect = 1.8
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 7/70 (10%)
Query: 38 CSSFR----KKASVNLFDSRGSSSLKFLSFLNVTCYSICSGDEFCSSSKRRSRGPVMAAK 93
CS+F KKASV+LFD G + FL L+ T S+ + K++S ++ A
Sbjct: 10 CSAFEAEINKKASVSLFDRFGEKNCIFLHQLDHTKKSLIKHENL---KKQKSIEGMLQAV 66
Query: 94 KAAEGEKKEE 103
+ EKK+E
Sbjct: 67 DLSIQEKKKE 76
>gnl|CDD|182360 PRK10293, PRK10293, acyl-CoA esterase; Provisional.
Length = 136
Score = 29.6 bits (66), Expect = 3.0
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 497 FSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTKKP 539
L+ +G+GN+ V LD + I ++ E P D RTK+P
Sbjct: 9 LEALNAMGEGNM--VGLLDIRFEHIGDDTLEATMPVDSRTKQP 49
>gnl|CDD|215329 PLN02610, PLN02610, probable methionyl-tRNA synthetase.
Length = 801
Score = 30.5 bits (69), Expect = 4.7
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 159 PYANGNLHMGHALNKILK-DIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQ 209
PY N H+G+ + +L D+ RY L+ Y Y+ G D +G E K L+
Sbjct: 26 PYVNNVPHLGNIIGCVLSADVFARYCRLRGYNAIYICGTDEYGTATETKALE 77
>gnl|CDD|132488 TIGR03447, mycothiol_MshC, cysteine--1-D-myo-inosityl
2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members
of this protein family are MshC,
l-cysteine:1-D-myo-inosityl
2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an
enzyme that uses ATP to ligate a Cys residue to a
mycothiol precursor molecule, in the second to last step
in mycothiol biosynthesis. This enzyme shows
considerable homology to Cys--tRNA ligases, and many
instances are misannotated as such. Mycothiol is found
in Mycobacterium tuberculosis, Corynebacterium
glutamicum, Streptomyces coelicolor, and various other
members of the Actinobacteria. Mycothiol is an analog to
glutathione [Biosynthesis of cofactors, prosthetic
groups, and carriers, Glutathione and analogs].
Length = 411
Score = 29.7 bits (67), Expect = 7.0
Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 9/75 (12%)
Query: 127 EPEIHKLWDDHQVFLRVADKNDGENFVLHDGPP---YANG-----NLHMGHALNKILKDI 178
P + L LR+ D DG+ + GP Y G H+GHA + D+
Sbjct: 5 APAVPAL-PGTGPPLRLFDTADGQVRPVEPGPEAGMYVCGITPYDATHLGHAATYLTFDL 63
Query: 179 INRYKLLQNYKVRYV 193
+NR ++V YV
Sbjct: 64 VNRVWRDAGHRVHYV 78
>gnl|CDD|191350 pfam05711, TylF, Macrocin-O-methyltransferase (TylF). This family
consists of bacterial macrocin O-methyltransferase
(TylF) proteins. TylF is responsible for the methylation
of macrocin to produce tylosin. Tylosin is a macrolide
antibiotic used in veterinary medicine to treat
infections caused by Gram-positive bacteria and as an
animal growth promoter in the swine industry. It is
produced by several Streptomyces species. As with other
macrolides, the antibiotic activity of tylosin is due to
the inhibition of protein biosynthesis by a mechanism
that involves the binding of tylosin to the ribosome,
preventing the formation of the
mRNA-aminoacyl-tRNA-ribosome complex. The structure of
one representative sequence from this family, NovP,
shows it to be an S-adenosyl-l-methionine-dependent
O-methyltransferase that catalyzes the penultimate step
in the biosynthesis of the aminocoumarin antibiotic
novobiocin. Specifically, it methylates at 4-OH of the
noviose moiety, and the resultant methoxy group is
important for the potency of the mature antibiotic. It
is likely that the key structural features of NovP are
common to the rest of the family and include: a helical
'lid' region that gates access to the co-substrate
binding pocket and an active centre that contains a
3-Asp putative metal binding site. A further conserved
Asp probably acts as the general base that initiates the
reaction by de-protonating the 4-OH group of the noviose
unit.
Length = 249
Score = 28.8 bits (65), Expect = 9.0
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 13/57 (22%)
Query: 169 HALNKIL-------KDIINRYKLLQNYKVRYVPGWDC---HGLPIE-LKVLQSLDED 214
H N++L ++ RY LL + +VR++PGW PIE L VL+ LD D
Sbjct: 133 HEYNEVLAVSLETVRENFARYGLLDD-QVRFLPGWFKDTLPTAPIERLAVLR-LDGD 187
>gnl|CDD|221931 pfam13136, DUF3984, Protein of unknown function (DUF3984). This
family of proteins is functionally uncharacterized.
This family of proteins is found in eukaryotes.
Proteins in this family are typically between 393 and
442 amino acids in length.
Length = 301
Score = 28.9 bits (65), Expect = 9.2
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 7 SFASNSSV-STPREATIAMMQSSSYRVLSRRTCSSFRKKASVNLFDSRGSSSL 58
S+ S+ SV +TP ++ +S S L +R SS R S L S+ S+ L
Sbjct: 42 SYLSSKSVPTTPG--ILSHSRSPSRSRLHKRKKSSRRSPMSDTLLKSKSSAHL 92
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.135 0.408
Gapped
Lambda K H
0.267 0.0849 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 41,059,306
Number of extensions: 4086889
Number of successful extensions: 3453
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3318
Number of HSP's successfully gapped: 122
Length of query: 794
Length of database: 10,937,602
Length adjustment: 105
Effective length of query: 689
Effective length of database: 6,280,432
Effective search space: 4327217648
Effective search space used: 4327217648
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (27.8 bits)