RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 003799
(794 letters)
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing
tRNA synthetase, double-sieve, ligase/RNA, mupiroci;
HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1
b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Length = 917
Score = 687 bits (1776), Expect = 0.0
Identities = 201/471 (42%), Positives = 278/471 (59%), Gaps = 41/471 (8%)
Query: 106 YKHTVDLPKTTFGMRANALVREPEIHKLWDDHQVFLRVADKNDG-ENFVLHDGPPYANGN 164
Y+ T+ +PKT F MR +EP+I + WD + + +KN G E F+LHDGPPYANGN
Sbjct: 3 YEKTLLMPKTDFPMRGGLPNKEPQIQEKWDAEDQYHKALEKNKGNETFILHDGPPYANGN 62
Query: 165 LHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKL 224
LHMGHALNKILKD I RYK +Q + YVPGWD HGLPIE + + + +K ++ ++
Sbjct: 63 LHMGHALNKILKDFIVRYKTMQGFYAPYVPGWDTHGLPIEQALTKKGVD--RKKMSTAEF 120
Query: 225 RAKAAKFAKATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGK 284
R K +FA ++ Q F+R GV D+N+PY+TL PEYEAAQI +FG+M+ +G IY+GK
Sbjct: 121 REKCKEFALEQIELQKKDFRRLGVRGDFNDPYITLKPEYEAAQIRIFGEMADKGLIYKGK 180
Query: 285 KPVHWSPSSRTALAEAELEYPEGHVSRSIYAVFRMVSAPPSTSGLLNEFLPDLGLAVWTT 344
KPV+WSPSS ++LAEAE+EY + S SIY F + D +WTT
Sbjct: 181 KPVYWSPSSESSLAEAEIEYHD-KRSASIYVAFNVKDDK-------GVVDADAKFIIWTT 232
Query: 345 TPWTVPANAAVAVNAKLQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFIIVASDL 404
TPWT+P+N A+ V+ +L+Y + G+ I+A L
Sbjct: 233 TPWTIPSNVAITVHPELKYGQYNV----NGE---------------------KYIIAEAL 267
Query: 405 VPTLEAKWG---TKLVIKKTLAGSDLENCRYVHPVDNRQCPVVIGGDYITTESGTGLVHT 461
+ + ++K G +LE HP +R+ VI GD++TT++GTG VHT
Sbjct: 268 SDAVAEALDWDKASIKLEKEYTGKELEWVVAQHPFLDRESL-VINGDHVTTDAGTGCVHT 326
Query: 462 APGHGQEDYVTSLKYGLPILSPVDDEGKFTEEAGKFSGLDVLGDGNVAVVKYLDEQMSLI 521
APGHG++DY+ +Y LP++SP+DD+G FTEE G+F G+ N AV L E+ +L+
Sbjct: 327 APGHGEDDYIVGQQYELPVISPIDDKGVFTEEGGQFEGMFYD-KANKAVTDLLTEKGALL 385
Query: 522 MEEPYEHKYPYDWRTKKPTIFRATEQWFASVEGFRQAAMDAIGQVKWVPPQ 572
+ H YP+DWRTKKP IFRAT QWFAS+ RQ +DAI +
Sbjct: 386 KLDFITHSYPHDWRTKKPVIFRATPQWFASISKVRQDILDAIENTNFKVNW 436
Score = 273 bits (700), Expect = 2e-79
Identities = 80/217 (36%), Positives = 117/217 (53%), Gaps = 13/217 (5%)
Query: 569 VPPQE-APGYGADVLRLWVSSVDYTGDVMIGPQVLRQMSDIYRKLRGTLRYLLGNLHDWR 627
+ P + GAD+ RLWVSS DY DV I ++L+Q SD YRK+R TLR++LGN++D+
Sbjct: 604 IVPDQVVKQKGADIARLWVSSTDYLADVRISDEILKQTSDDYRKIRNTLRFMLGNINDFN 663
Query: 628 -VGNSISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDV 686
+SI +L +D+Y L +L + +YE++ + I+Q +Q FI V+LSNFY D
Sbjct: 664 PDTDSIPESELLEVDRYLLNRLREFTASTINNYENFDYLNIYQEVQNFINVELSNFYLDY 723
Query: 687 AKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAA 746
KD LY S RRS QTVL L+ + +++APIL H AE+VW + P
Sbjct: 724 GKDILYIEQRDSHIRRSMQTVLYQILVDMTKLLAPILVHTAEEVWSHTP-------HVKE 776
Query: 747 EFVFESKWPVLDEKWRTFPVGEIYFWGKILEVIVVVT 783
E V + P + E + W + + V
Sbjct: 777 ESVHLADMPKVVEVDQALLD----KWRTFMNLRDDVN 809
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken
structural genomics/proteom initiative, RSGI, structural
genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1
b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Length = 821
Score = 490 bits (1263), Expect = e-162
Identities = 134/453 (29%), Positives = 197/453 (43%), Gaps = 47/453 (10%)
Query: 126 REPEIHKLWDDHQVFLRVADKNDG-ENFVLHDGPPYANGNLHMGHALNKILKDIINRYKL 184
E E+ W ++F + + G + +++GPP ANG H+GHA + KD+ RYK
Sbjct: 13 LEEEVLAFWKREKIFQKSVENRKGGPRYTVYEGPPTANGLPHVGHAQARSYKDLFPRYKT 72
Query: 185 LQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKD---LTPSKLRAKAAKFAKATVKAQMA 241
++ Y GWD HGLP+EL+V + L +K++ + + K A
Sbjct: 73 MRGYYAPRRAGWDTHGLPVELEVEKKLGLKSKREIEAYGIERFNQACRESVFTYEKEWEA 132
Query: 242 SFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAEAE 301
+R W D + Y TL+P Y + + +G +YR K V + P T L+ E
Sbjct: 133 FTERIAYWVDLEDAYATLEPTYIESIWWSLKNLFDRGLLYRDHKVVPYCPRCGTPLSSHE 192
Query: 302 LE--YPEGHVSRSIYAVFRMVSAPPSTSGLLNEFLPDLGLAVWTTTPWTVPANAAVAVNA 359
+ Y E S+Y F + L L +WTTTPWT+P N A AV+
Sbjct: 193 VALGYKE-IQDPSVYVRFPLKEPKKLG-------LEKASLLIWTTTPWTLPGNVAAAVHP 244
Query: 360 KLQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFIIVASDLVPTLEAKWGTKLVIK 419
+ YA + +I+ L L + +
Sbjct: 245 EYTYAAFQ-------------------------VGDEALILEEGLGRKLLGE---GTQVL 276
Query: 420 KTLAGSDLENCRYVHPVDNR--QCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYG 477
KT G LE Y P + V+ DY++ E GTG+VH AP G ED T+ YG
Sbjct: 277 KTFPGKALEGLPYTPPYPQALEKGYFVVLADYVSQEDGTGIVHQAPAFGAEDLETARVYG 336
Query: 478 LPILSPVDDEGKFTEEAGKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTK 537
LP+L VD+EGK E F GL + N A+++ L + L EE Y H YP+ WR
Sbjct: 337 LPLLKTVDEEGKLLVEP--FKGLYFR-EANRAILRDLRGRGLLFKEESYLHSYPHCWRCS 393
Query: 538 KPTIFRATEQWFASVEGFRQAAMDAIGQVKWVP 570
P ++ ATE WF F+ + ++ WVP
Sbjct: 394 TPLMYYATESWFIKNTLFKDELIRNNQEIHWVP 426
Score = 163 bits (414), Expect = 8e-42
Identities = 46/190 (24%), Positives = 84/190 (44%), Gaps = 8/190 (4%)
Query: 577 YGADVLRLWV-SSVDYTGDVMIGPQVLRQM-SDIYRKLRGTLRYLL--GNLHDWRVGNSI 632
+GAD LR ++ S D GP ++R+ D + L + + NL + N
Sbjct: 609 FGADALRWYIYVSAPPEADRRFGPNLVRETVRDYFLTLWNVYSFFVTYANLDRPDLKNPP 668
Query: 633 SYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRLY 692
+ P +D++ L +++++++ + E+ E+Y + ++ F++ DLS +Y + R +
Sbjct: 669 PPEKRPEMDRWLLARMQDLIQRVTEALEAYDPTTSARALRDFVVEDLSQWYVRRNRRRFW 728
Query: 693 TGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAAEFVFES 752
R + L L+ + + AP P LAE +WQNL A E V +
Sbjct: 729 KNEDAL-DREAAYATLYEALVLVATLAAPFTPFLAEVLWQNLV---RSVRLEAKESVHLA 784
Query: 753 KWPVLDEKWR 762
WP D
Sbjct: 785 DWPEADPALA 794
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural
genomics/proteomics initiativ structural genomics,
ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Length = 967
Score = 308 bits (791), Expect = 6e-92
Identities = 99/541 (18%), Positives = 178/541 (32%), Gaps = 106/541 (19%)
Query: 120 RANALVREPEIHKLWDDHQVFLRVADKNDG-ENFVLHDGPPYANGNLHMGHALNKILKDI 178
N E + K W + ++F + F + PY +G+LH+GHA + D+
Sbjct: 3 ELNFKAIEEKWQKRWLEAKIFEPNIRDKPKEKKFYITVAFPYLSGHLHVGHARTYTIPDV 62
Query: 179 INRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKL----------RAKA 228
I R+K +Q Y V + W G PI + + D K +
Sbjct: 63 IARFKRMQGYNVLFPMAWHITGSPIVGIAERIKNRDPKTIWIYRDVYKVPEEILWTFEDP 122
Query: 229 AKFAKATVKAQMASFKRYGVWADWNNPYLTLD--PEYEAAQIEVFGQMSLQGYIYRGKKP 286
K +KA +F R G DW+ + T P + F ++ +GYI +G
Sbjct: 123 INIVKYFMKAAKETFIRAGFSVDWSREFYTTSLFPPFSKFIEWQFWKLKEKGYIVKGAHR 182
Query: 287 VHWSPSSRTALAEAELEYPEGHVSRSIYAVFRMVSAPPSTSGLLNEFLPDLGLAVWTTTP 346
V W P T L + +L E V Y + + L E + L T P
Sbjct: 183 VRWDPVVGTPLGDHDLMEGED-VPILDYIIIKFE---------LRENGEVIYLPAATLRP 232
Query: 347 WTVPANAAVAVNAKLQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFIIVASDLVP 406
TV + VN Y +++ KD+++ +I+
Sbjct: 233 ETVYGVTNMWVNPNATYVKAKVRR--------------------KDKEETWIVSKEAAYK 272
Query: 407 TLEAKWGTKLVIKKTLAGSDLENCRYVHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHG 466
+ ++ + + G L +PV + ++ +++ ++ TG+V + P H
Sbjct: 273 L--SFQDREIEVIEEFKGEKLIGKYVRNPVSGDEVIILP-AEFVDPDNATGVVMSVPAHA 329
Query: 467 QEDYVTS----------LKYGLPI----------LSPVDDEGKFT--------------- 491
D+V KY + L ++ G F
Sbjct: 330 PFDHVALEDLKRETEILEKYDIDPRIVENITYISLIKLEGYGDFPAVEEVNKLGIKSQKD 389
Query: 492 ----EEA----------------GKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYP 531
E+A + G V + A+ K + E+ + + K
Sbjct: 390 KEKLEQATKTIYKAEYHKGIFKVPPYEGKPVQ-EVKEAIAKEMLEKGIAEIMYEFAEKNV 448
Query: 532 YDWRTKKPTIFRATEQWFASV--EGFRQAAMDAIGQVKWVPPQEAPGYGA--DVLRLWVS 587
+ I +QWF +++ A A+ ++K +P + A D L
Sbjct: 449 ISRFGNRAVIKIIHDQWFIDYGNPEWKEKARKALERMKILPETRRAQFEAIIDWLDKKAC 508
Query: 588 S 588
+
Sbjct: 509 A 509
Score = 101 bits (252), Expect = 4e-22
Identities = 43/196 (21%), Positives = 74/196 (37%), Gaps = 28/196 (14%)
Query: 568 WVPPQEA-PGYGADVLRLWV-SSVDYTGDVMIGPQVLRQMSDIYRKLRGTLRYLLGNLHD 625
+ +A GADV+RL++ S ++ D KLR + +
Sbjct: 658 VLNFIDAIEENGADVVRLYIMSLAEHDSD-------FDWRRKEVGKLRKQIERFYELISQ 710
Query: 626 WRVGNSISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFD 685
+ +L ID++ L +L +K + E ++ Q I+ DL +Y
Sbjct: 711 FAEYEVKGNVELKDIDRWMLHRLNKAIKETTNALEEFRTRTAVQWAFYSIMNDL-RWYLR 769
Query: 686 VAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSA 745
+ R + + VL VR++AP PH+ E++W+ L
Sbjct: 770 RTEGR---------DDEAKRYVLRTLADVWVRLMAPFTPHICEELWEKLGG--------- 811
Query: 746 AEFVFESKWPVLDEKW 761
FV +KWP E+W
Sbjct: 812 EGFVSLAKWPEPVEEW 827
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino
acid, aminoacylation, trnaLeu, structural genomics;
2.05A {Pyrococcus horikoshii}
Length = 810
Score = 279 bits (716), Expect = 1e-82
Identities = 98/534 (18%), Positives = 177/534 (33%), Gaps = 106/534 (19%)
Query: 127 EPEIHKLWDDHQVFLRVADKNDG-ENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLL 185
E + K W + ++F + F + PY +G+LH+GHA + D+I R+K +
Sbjct: 10 EEKWQKRWLEAKIFEPNIRDKPKEKKFYITVAFPYLSGHLHVGHARTYTIPDVIARFKRM 69
Query: 186 QNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLR----------AKAAKFAKAT 235
Q Y V + W G PI + + D K + K
Sbjct: 70 QGYNVLFPMAWHITGSPIVGIAERIKNRDPKTIWIYRDVYKVPEEILWTFEDPINIVKYF 129
Query: 236 VKAQMASFKRYGVWADWNNPYLTLD--PEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSS 293
+KA +F R G DW+ + T P + F ++ +GYI +G V W P
Sbjct: 130 MKAAKETFIRAGFSVDWSREFYTTSLFPPFSKFIEWQFWKLKEKGYIVKGAHRVRWDPVV 189
Query: 294 RTALAEAELEYPEGHVSRSIYAVFRMVSAPPSTSGLLNEFLPDLGLAVWTTTPWTVPANA 353
T L + +L E V Y + + L E + L T P TV
Sbjct: 190 GTPLGDHDLMEGED-VPILDYIIIKFE---------LRENGEVIYLPAATLRPETVYGVT 239
Query: 354 AVAVNAKLQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKKVFIIVASDLVPTLEAKWG 413
+ VN Y +++ KD+++ +I+ +
Sbjct: 240 NMWVNPNATYVKAKVRR--------------------KDKEETWIVSKEAAYKL--SFQD 277
Query: 414 TKLVIKKTLAGSDLENCRYVHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTS 473
++ + + G L +PV + ++ +++ ++ TG+V + P H D+V
Sbjct: 278 REIEVIEEFKGEKLIGKYVRNPVSGDEVIILP-AEFVDPDNATGVVMSVPAHAPFDHVAL 336
Query: 474 ----------LKYGLPI----------LSPVDDEGKFT-------------------EEA 494
KY + L ++ G F E+A
Sbjct: 337 EDLKRETEILEKYDIDPRIVENITYISLIKLEGYGDFPAVEEVNKLGIKSQKDKEKLEQA 396
Query: 495 ----------------GKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTKK 538
+ G V + A+ K + E+ + + K +
Sbjct: 397 TKTIYKAEYHKGIFKVPPYEGKPV-QEVKEAIAKEMLEKGIAEIMYEFAEKNVISRFGNR 455
Query: 539 PTIFRATEQWFASV--EGFRQAAMDAIGQVKWVPPQEAPGYGA--DVLRLWVSS 588
I +QWF +++ A A+ ++K +P + A D L +
Sbjct: 456 AVIKIIHDQWFIDYGNPEWKEKARKALERMKILPETRRAQFEAIIDWLDKKACA 509
Score = 85.0 bits (210), Expect = 4e-17
Identities = 36/169 (21%), Positives = 65/169 (38%), Gaps = 19/169 (11%)
Query: 568 WVPPQEAPG-YGADVLRLWV-SSVDYTGDVMIGPQVLRQMSDIYRKLRGTLRYLLGNLHD 625
+ +A GADV+RL++ S ++ D + + KLR + +
Sbjct: 658 VLNFIDAIEENGADVVRLYIMSLAEHDSDFDWRRKEVG-------KLRKQIERFYELISQ 710
Query: 626 WRVGNSISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFD 685
+ +L ID++ L +L +K + E ++ Q FY
Sbjct: 711 FAEYEVKGNVELKDIDRWMLHRLNKAIKETTNALEEFRTRTAVQWA----------FYSI 760
Query: 686 VAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNL 734
+ R Y T + + VL VR++AP PH+ E++W+ L
Sbjct: 761 MNDLRWYLRRTEGRDDEAKRYVLRTLADVWVRLMAPFTPHICEELWEKL 809
>1wny_A Isoleucyl-tRNA synthetase; ligase, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; 1.60A {Thermus thermophilus} PDB: 1wnz_A*
1wk8_A* 1udz_A 1ue0_A
Length = 186
Score = 196 bits (500), Expect = 2e-58
Identities = 67/222 (30%), Positives = 90/222 (40%), Gaps = 42/222 (18%)
Query: 310 SRSIYAVFRMVSAPPSTSGLLNEFLPDLGLAVWTTTPWTVPANAAVAVNAKLQYAVVEIQ 369
S+Y F + L L +WTTTPWT+P N A AV+ + YA
Sbjct: 3 DPSVYVRFPLKEPK-------KLGLEKASLLIWTTTPWTLPGNVAAAVHPEYTYAAF--- 52
Query: 370 SLLEGDSAAPANKKSRPGNVLKDQKKVFIIVASDLVPTLEAKWGTKLVIKKTLAGSDLEN 429
+ + I + L L G + KT G LE
Sbjct: 53 ---------------------QVGDEALI-LEEGLGRKL---LGEGTPVLKTFPGKALEG 87
Query: 430 CRYVHP---VDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPILSPVDD 486
Y P + V + DY++ E GTG+VH AP G ED T+ YGLP+L VD+
Sbjct: 88 LPYTPPYPQALEKGYFV-VLADYVSQEDGTGIVHQAPAFGAEDLETARVYGLPLLKTVDE 146
Query: 487 EGKFTEEAGKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEH 528
EGK E F GL + N A+++ L + L EE Y H
Sbjct: 147 EGKLLVEP--FKGLYFR-EANRAILRDLRGRGLLFKEESYLH 185
>2wfd_A Leucyl-tRNA synthetase, cytoplasmic; aminoacyl-tRNA synthetase,
phosphoprotein, editing domain, nucleotide-binding,
hydrolysis of MIS-charged trnas; 3.25A {Homo sapiens}
Length = 252
Score = 140 bits (353), Expect = 1e-37
Identities = 41/262 (15%), Positives = 83/262 (31%), Gaps = 37/262 (14%)
Query: 309 VSRSIYAVFRMVSAPPSTSGLLNEFLPDLGLAVWTTTPWTVPANAAVAVNAKLQYAVVEI 368
+ Y + ++ P S L ++ L T P T+ V ++Y E
Sbjct: 2 MGPQEYTLLKLKVLEPYPSKLSGLKGKNIFLVAATLRPETMFGQTNCWVRPDMKYIGFET 61
Query: 369 QSLLEGDSAAPANKKSRPGNVLKDQKKVFII---VASDLVPTLEAKWGTKLVIKKTLAGS 425
+FI A ++ K + + K L G
Sbjct: 62 -----------------------VNGDIFICTQKAARNMSYQGFTKDNGVVPVVKELMGE 98
Query: 426 DLENCRYVHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSL----KYGLPIL 481
++ P+ + + V+ I + GTG+V + P +D K L
Sbjct: 99 EILGASLSAPLTSYKVIYVLPMLTIKEDKGTGVVTSVPSDSPDDIAALRDLKKKQALRAK 158
Query: 482 SPVDDEGKFTEEAGKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTKKPTI 541
+ D+ E +++ G GN++ V DE ++ ++ K+
Sbjct: 159 YGIRDDMVLPFEP--VPVIEIPGFGNLSAVTICDE-----LKIQSQNDREKLAEAKEKIY 211
Query: 542 FRATEQWFASVEGFRQAAMDAI 563
+ + V+GF+ + +
Sbjct: 212 LKGFYEGIMLVDGFKGQKVQDV 233
>3pz6_A Leurs, leucyl-tRNA synthetase; editing domain, glleurs_CP1, ligase;
2.60A {Giardia intestinalis}
Length = 311
Score = 129 bits (326), Expect = 2e-33
Identities = 36/266 (13%), Positives = 82/266 (30%), Gaps = 41/266 (15%)
Query: 262 EYEAAQIEV--FGQMSLQGYIYRGKKPVHWSPSSRTALAEAELEYPEGHVSRSIYAVFRM 319
EY ++E+ + + + + + + + ++ P + + A+F
Sbjct: 10 EYIGIKLELINYTTLLEEQREQQQEGEEEGDGMDDSLAEKLNIKLPRFYSNPKNKAIFDQ 69
Query: 320 VSAPPSTSGLLNEFLPDLGLAVWTTTPWTVPANAAVAVNAKLQYAVVEIQSLLEGDSAAP 379
+ + + L T P T+ V +Y I
Sbjct: 70 LWENQVDNA-------KVYLLAATLRPETMVGQTNCWVLPTGRYGAYYI----------- 111
Query: 380 ANKKSRPGNVLKDQKKVFII---VASDLV--PTLEAKWGTKLVIKKTLAGSDLENCRYVH 434
++ +V I+ A ++ K +L ++GSDL
Sbjct: 112 ------------NKDEVIIVSEHAAVNMAHQGLNNNKPFGELDFISEISGSDLLLATVRA 159
Query: 435 PVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPILSPVDDEGKFTEEA 494
P+ + V+ + I + GTG+V + P +DY + G
Sbjct: 160 PLSPYEQIFVLPLETIKMDKGTGIVTSVPSDAPDDYACYKDILENRNGIAEKYGVDVGLM 219
Query: 495 GK----FSGLDVLGDGNVAVVKYLDE 516
+ +++ G ++ V+ +E
Sbjct: 220 LEPYSPLPIIEIPDIGTLSAVRLCEE 245
>2wfg_A Cytosolic leucyl-tRNA synthetase; ligase, editing domain,
hydrolysis of MIS-charged trnas, benzoxaborole,
anti-fungal; HET: ZZB; 2.20A {Candida albicans} PDB:
2wfe_A*
Length = 261
Score = 115 bits (288), Expect = 1e-28
Identities = 39/253 (15%), Positives = 68/253 (26%), Gaps = 80/253 (31%)
Query: 336 DLGLAVWTTTPWTVPANAAVAVNAKLQYAVVEIQSLLEGDSAAPANKKSRPGNVLKDQKK 395
+ L T P T+ V+ K+ Y V +
Sbjct: 32 KVYLVAATLRPETMYGQTCCFVSPKIDYGVFDA-----------------------GNGD 68
Query: 396 VFII---VASDLVPTLEAKWGTKLVIKKTLAGSDLENCRYVHPVDNRQCPVVIGGDYITT 452
FI ++ T+ G L R P + V+ + +
Sbjct: 69 YFITTERAFKNMSFQNLTPKRGYYKPLFTINGKTLIGSRIDAPYAVNKNLRVLPMETVLA 128
Query: 453 ESGTGLVHTAPGHGQEDYVTSL-------KYGL--------PI-LSPVDDEGKFT----- 491
GTG+V P +D+VT+ YG+ + + + G
Sbjct: 129 TKGTGVVTCVPSDSPDDFVTTRDLANKPEYYGIEKDWVQTDIVPIVHTEKYGDKCAEFLV 188
Query: 492 --------------EEA----------------GKFSGLDVLGDGNVAVVKYLDEQ-MSL 520
A GK+ G V D V + L ++ ++
Sbjct: 189 NDLKIQSPKDSVQLANAKELAYKEGFYNGTMLIGKYKGDKVE-DAKPKVKQDLIDEGLAF 247
Query: 521 IMEEP-YEHKYPY 532
+ EP EH + +
Sbjct: 248 VYNEPELEHHHHH 260
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold,
coiled coil, riken structural genomics/proteomics
initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus}
SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A*
1iyw_A
Length = 862
Score = 113 bits (285), Expect = 7e-26
Identities = 63/241 (26%), Positives = 104/241 (43%), Gaps = 33/241 (13%)
Query: 127 EPEIHKLWDDHQVFLRVADKNDGENFVLHDGPPYANGNLHMGHALNKILKDIINRYKLLQ 186
EP+ + W + FV+ PP G+LHMGHAL+ L+D + RYK ++
Sbjct: 13 EPKWAEKWAKNPFVANPKS--GKPPFVIFMPPPNVTGSLHMGHALDNSLQDALIRYKRMR 70
Query: 187 NYKVRYVPGWDCH-GLPIELKVLQSLDED--AKKDLTPSKLRAKA----AKFAKATVKAQ 239
++ ++PG D H G+ ++ V + L ++ + DL K + + T+ Q
Sbjct: 71 GFEAVWLPGTD-HAGIATQVVVERLLLKEGKTRHDLGREKFLERVWQWKEESG-GTILKQ 128
Query: 240 MASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALAE 299
+ KR G ADW+ T+D + A F + +G YR + V+W P T L++
Sbjct: 129 L---KRLGASADWSREAFTMDEKRSRAVRYAFSRYYHEGLAYRAPRLVNWCPRCETTLSD 185
Query: 300 AELEYPE--GHVSRSIYAVFRMVSAPPSTSGLLNEFLPDLGLAVWTTTPWTVPANAAVAV 357
E+E G + Y G + + T P TV A+ A+AV
Sbjct: 186 LEVETEPTPGKLYTLRY--------EVEGGG---------FIEIATVRPETVFADQAIAV 228
Query: 358 N 358
+
Sbjct: 229 H 229
Score = 89.5 bits (223), Expect = 1e-18
Identities = 31/144 (21%), Positives = 55/144 (38%), Gaps = 6/144 (4%)
Query: 433 VHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPILSPVDDEGKFTE 492
P+ P+ + + + GTG + P H DY ++GL +S ++ EG+
Sbjct: 244 RIPLTEVWIPI-LADPAVEKDFGTGALKVTPAHDPLDYEIGERHGLKPVSVINLEGRMEG 302
Query: 493 E--AGKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTKKPTIFRATEQWFA 550
E GLD + V+ E L+ EE Y R P + QW+
Sbjct: 303 ERVPEALRGLDRF-EARRKAVELFREAGHLVKEEDYTIALATCSRCGTPIEYAIFPQWWL 361
Query: 551 SVEGFRQAAMDAI--GQVKWVPPQ 572
+ + + + G + +VP +
Sbjct: 362 RMRPLAEEVLKGLRRGDIAFVPER 385
Score = 66.8 bits (164), Expect = 2e-11
Identities = 37/190 (19%), Positives = 72/190 (37%), Gaps = 28/190 (14%)
Query: 577 YGADVLRLWVSSVDYTG-DVMIGPQVLRQMSDIYR----KLRGTLRYLLGNLHDWRVGNS 631
YGAD LR + + G D+ + + L R KL R++L + G
Sbjct: 546 YGADALRFALIYLATGGQDIRLDLRWLEM----ARNFANKLYNAARFVLLSR----EGFQ 597
Query: 632 ISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKDRL 691
D + D++ +L V+ I YE+ + + + + + ++Y + AK L
Sbjct: 598 AKEDTPTLADRFMRSRLSRGVEEITALYEALDLAQAAREVYELVWSEFCDWYLEAAKPAL 657
Query: 692 YTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAAEFVFE 751
G + L L +++++ P++P L +++Q L E +
Sbjct: 658 KAGNAHT------LRTLEEVLAVLLKLLHPMMPFLTSELYQALT---------GKEELAL 702
Query: 752 SKWPVLDEKW 761
WP +
Sbjct: 703 EAWPEPGGRD 712
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein
biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus}
PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Length = 878
Score = 76.5 bits (189), Expect = 2e-14
Identities = 48/178 (26%), Positives = 75/178 (42%), Gaps = 26/178 (14%)
Query: 127 EPEIHKLWDDHQVFLRVADKNDGENF-VLHDGPPYANGNLHMGHALNKILKDIINRYKLL 185
E + + W++ VL PY +G+LHMGH N + D++ R++ +
Sbjct: 10 EAKWQRFWEEKGFMKAKDLPGGRGKQYVL-VMFPYPSGDLHMGHLKNYTMGDVLARFRRM 68
Query: 186 QNYKVRYVPGWDCHGLPIELKVLQSLDEDA--KKDLTPSKLRAKAAKFAK---ATVKAQM 240
Q Y+V + GWD GLP E+A K + P + K +
Sbjct: 69 QGYEVLHPMGWDAFGLPA---------ENAALKFGVHP-------KDWTYANIRQAKESL 112
Query: 241 ASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALA 298
+ G+ DW+ T +PEY +F +M +G YR K V+W P +T LA
Sbjct: 113 ---RLMGILYDWDREVTTCEPEYYRWNQWIFLKMWEKGLAYRAKGLVNWCPKCQTVLA 167
Score = 49.9 bits (120), Expect = 3e-06
Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 16/99 (16%)
Query: 433 VHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPI----LSPVDDEG 488
++P + P+ DY+ GTG + P H Q DY + K+GLPI P +
Sbjct: 312 LNPATGERIPIWTA-DYVLFGYGTGAIMAVPAHDQRDYEFARKFGLPIKKVIERPGEPLP 370
Query: 489 KFTEEA----------GKFSGLDVLGDGNVAVVKYLDEQ 517
+ E A G F G + +G V+ +L+E+
Sbjct: 371 EPLERAYEEPGIMVNSGPFDGTES-EEGKRKVIAWLEEK 408
Score = 43.7 bits (104), Expect = 2e-04
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 10/56 (17%)
Query: 706 TVLSAHLLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAAEFVFESKWPVLDEKW 761
V + ++++ P PHLAE++W + +FE+ WP LDEK
Sbjct: 766 PVYRTAIRYYLQMLFPFAPHLAEELWHWFW----------PDSLFEAGWPELDEKA 811
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding,
protein biosynthesis I aminoacyl-tRNA synthetase,
ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A
4ari_A* 4as1_A*
Length = 880
Score = 74.1 bits (183), Expect = 9e-14
Identities = 52/176 (29%), Positives = 78/176 (44%), Gaps = 23/176 (13%)
Query: 127 EPEIHKLWDDHQVFLRVADKNDGENF-VLHDGPPYANGNLHMGHALNKILKDIINRYKLL 185
E ++ WD+ + F V + E + L PY +G LHMGH N + D+I RY+ +
Sbjct: 31 ESKVQLHWDEKRTF-EVTEDESKEKYYCL-SMLPYPSGRLHMGHVRNYTIGDVIARYQRM 88
Query: 186 QNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKAAKFAK---ATVKAQMAS 242
V GWD GLP E A K+ T A + A +K Q+
Sbjct: 89 LGKNVLQPIGWDAFGLPAE--------GAAVKNNTA------PAPWTYDNIAYMKNQL-- 132
Query: 243 FKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALA 298
K G DW+ T PEY + + F ++ +G +Y+ V+W P+ +T LA
Sbjct: 133 -KMLGFGYDWSRELATCTPEYYRWEQKFFTELYKKGLVYKKTSAVNWCPNDQTVLA 187
Score = 51.4 bits (124), Expect = 1e-06
Identities = 31/99 (31%), Positives = 44/99 (44%), Gaps = 16/99 (16%)
Query: 433 VHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPI---LSPVD-DEG 488
VHP+ + PV +++ E GTG V PGH Q DY + KYGL I + D E
Sbjct: 330 VHPLTGEEIPVWAA-NFVLMEYGTGAVMAVPGHDQRDYEFASKYGLNIKPVILAADGSEP 388
Query: 489 KFTEEA----------GKFSGLDVLGDGNVAVVKYLDEQ 517
+++A G+F+GLD A+ L
Sbjct: 389 DLSQQALTEKGVLFNSGEFNGLDH-EAAFNAIADKLTAM 426
Score = 44.9 bits (107), Expect = 1e-04
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 9/50 (18%)
Query: 712 LLSIVRVIAPILPHLAEDVWQNLPFAYTLEDGSAAEFVFESKWPVLDEKW 761
LL++VR++ P PH+ +WQ L + + WPV DEK
Sbjct: 774 LLAVVRMLNPFTPHICFTLWQEL---------KGEGDIDNAPWPVADEKA 814
>3tun_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs,
parasite, protein-IN complex, translation, nucleotide
binding; HET: C13; 2.55A {Trypanosoma brucei}
Length = 542
Score = 68.9 bits (168), Expect = 3e-12
Identities = 29/148 (19%), Positives = 58/148 (39%), Gaps = 24/148 (16%)
Query: 160 YANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDL 219
Y N H+GH + ++ D+I RY ++ +V + G D HG + +K +
Sbjct: 19 YVNAAPHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHGQKVAEAA-------KQKQV 71
Query: 220 TPSKLRAKAAKFAKATVKAQMASFKRYGVWADWNNPY----LTLDPEYEAAQIEVFGQMS 275
+P A FK+ + + T + +++A E++ ++
Sbjct: 72 SP-----------YDFTTAVAGEFKK--XFEQMDYSIDYFIRTTNEQHKAVVKELWTKLE 118
Query: 276 LQGYIYRGKKPVHWSPSSRTALAEAELE 303
+G IY G+ +S S + L +
Sbjct: 119 QKGDIYLGRYEGWYSISDESFLTPQNIT 146
Score = 38.1 bits (88), Expect = 0.012
Identities = 35/185 (18%), Positives = 59/185 (31%), Gaps = 41/185 (22%)
Query: 570 PPQEAPGYGADVLRLWVSSVDYTGDVMIGPQVLRQMSDIYRKLRGTLRYLLGNL------ 623
P ++A +G D L+ ++ + ++ +L G L LGNL
Sbjct: 334 PVEKAEEFGYDALKYFLLR-----ESGFSDDGDYSDKNMIARLNGELADTLGNLVMRCTS 388
Query: 624 -HDWRVGNSISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNF 682
G S D+ + ++++ Y K + F ++ N
Sbjct: 389 AKINVNGEWPSPAAYTEEDESLIQLIKDLPGTADHYYLIPDIQKAIIAV--FDVLRAINA 446
Query: 683 YFD------VAKD---RLYTGGTTSFTRRSCQTVLSAHLLSIVRVIA----PILPHLAED 729
Y + K RL +TVL L VRV PILP +
Sbjct: 447 YVTDMAPWKLVKTDPERL-------------RTVL-YITLEGVRVTTLLLSPILPRKSVV 492
Query: 730 VWQNL 734
++ L
Sbjct: 493 IFDML 497
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 69.1 bits (168), Expect = 4e-12
Identities = 85/676 (12%), Positives = 201/676 (29%), Gaps = 168/676 (24%)
Query: 166 HMGHALNKILKDIINRYK-LLQNYKVRYVPGWDCHGLPIELK----------VLQSLDED 214
H H ++ + +YK +L ++ +V +DC + K ++ S D
Sbjct: 2 HHHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAV 61
Query: 215 AKKDLTPSKLRAKAAKFAKATVKAQMASFKRYG-VWADW----NNPYLTLDPEYEAAQIE 269
+ L +K + + V+ + Y + + P + Y +
Sbjct: 62 SGTLRLFWTLLSKQEEMVQKFVEEVLR--INYKFLMSPIKTEQRQPSMMTR-MYIEQRDR 118
Query: 270 VF--GQMSLQGYIYRGKKPVHWSPSSRTALAEAELEYPEGHVSRSIYAVFRMVSAPPSTS 327
++ Q+ + + R +P R AL E P +V + ++ + +
Sbjct: 119 LYNDNQVFAKYNVSR-LQPYL---KLRQALLELR---PAKNV-----LIDGVLGSGKTW- 165
Query: 328 GLLNEFLPDLGLAV-------WTTTPWTVPANAAVAVNAKLQYAVV-EIQSLLEGDSAAP 379
+ + + W + + KL Y + S + S
Sbjct: 166 -VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK 224
Query: 380 ANKKSRPGNVLKDQKKVFIIVASDLVPTLEAKWGTKLVIKKTLAGSDLENCRYVHPVDNR 439
+ ++ + + + + L++ L +++N + + +
Sbjct: 225 LRI-----HSIQAELRRLL---------KSKPYENCLLV---L--LNVQNAKAWNAFNL- 264
Query: 440 QCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPILSPVDDEGKFTEEAGKFSG 499
C ++ +TT + D++++ L T +
Sbjct: 265 SCKIL-----LTTRF-KQVT---------DFLSAATTTHISL--DHHSMTLTPDE----V 303
Query: 500 LDVLGDGNVAVVKYLD-------EQM--------SLIMEEPYEHKYPYD-WRT----KKP 539
+L KYLD ++ S+I E + +D W+ K
Sbjct: 304 KSLLL-------KYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLT 356
Query: 540 TIFRATEQWFASVEGFRQAAMD-AIGQ--VKWVPPQEAPGYGADVL-RLWVSSVDYTGDV 595
TI ++ E +R+ ++ +P +L +W + DV
Sbjct: 357 TIIESSLNVLEPAE-YRKMFDRLSVFPPSAH-IPTI--------LLSLIWFDVIKS--DV 404
Query: 596 MIGPQVLRQMSDIYRKLRGTLRYLLGNLHDWRVGNSISYDDLP-----MIDQYAL---FQ 647
M+ L + S + ++ + + + + + ++ ++D Y + F
Sbjct: 405 MVVVNKLHKYSLVEKQPKESTIS----IPSIYLELKVKLENEYALHRSIVDHYNIPKTFD 460
Query: 648 LENIVKNIRESYESYQFF----KIFQIIQRFIIVDLSNFYFDVA--KDRLYTGGTTSFTR 701
++++ + Y Y K + +R + + D + ++ T
Sbjct: 461 SDDLIPPYLDQY-FYSHIGHHLKNIEHPERMTL--FRMVFLDFRFLEQKIRHDSTAWNAS 517
Query: 702 RSCQTVLSAHLLSIVRV----IAPILPH---LAEDVWQNLPFAYTLEDGSAAEFVFESKW 754
S + L ++ I P L + LP E + SK+
Sbjct: 518 GS-----ILNTLQQLKFYKPYICDNDPKYERLVNAILDFLP--------KIEENLICSKY 564
Query: 755 PVLDEKWRTFPVGEIY 770
L I+
Sbjct: 565 TDLLRIALMAEDEAIF 580
Score = 48.7 bits (115), Expect = 7e-06
Identities = 48/376 (12%), Positives = 102/376 (27%), Gaps = 124/376 (32%)
Query: 4 ILKSFASNSSV-STPREATIA--MMQSSSYRVLSRRTCSSFRKKASVNLFDSRGSSSLKF 60
+F + + T R + + +++ + + +L
Sbjct: 258 AWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL---------- 307
Query: 61 LSFLNVTCYS----ICSGDEFCSSSKRRSRGPVMAAKKAAEGEKKEEGRYKHTVDLPK-- 114
L +L+ + + + S + A+ +G + +KH V+ K
Sbjct: 308 LKYLDCRPQDLPREVLTTNPRRLS---------IIAESIRDGLATWD-NWKH-VNCDKLT 356
Query: 115 TTFGMRANALVREPEIHK----------------------LW-----DDHQVFL------ 141
T N L EP ++ +W D V +
Sbjct: 357 TIIESSLNVL--EPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY 414
Query: 142 RVADKNDGEN-FVLHD------GPPYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVP 194
+ +K E+ + LH + I++ Y + + +
Sbjct: 415 SLVEKQPKESTISIPSIYLELKVKLENEYALH---------RSIVDHYNIPKTF-----D 460
Query: 195 GWDCHGLPIELKV-------LQSLDEDAKKDLTP----------SKLRA-KAAKFAKATV 236
D ++ L++++ + L K+R A A ++
Sbjct: 461 SDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSI 520
Query: 237 KAQMASFKRYGVWADWNNPYLTL-DPEYEA--AQIEVFGQMSLQGYIYRGKKPVHWSPSS 293
+ K Y PY+ DP+YE I F ++ + K
Sbjct: 521 LNTLQQLKFYK-------PYICDNDPKYERLVNAILDF-LPKIEENLICSKY-------- 564
Query: 294 RTALAEAELEYPEGHV 309
T L L + +
Sbjct: 565 -TDLLRIALMAEDEAI 579
Score = 45.6 bits (107), Expect = 6e-05
Identities = 74/559 (13%), Positives = 158/559 (28%), Gaps = 193/559 (34%)
Query: 99 EKKEEGRYKHTVDLPKTTFGMRANALVREP------------EIHKLWDDHQVF------ 140
K+EE K ++ + + + + E + +L++D+QVF
Sbjct: 73 SKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS 132
Query: 141 -------LRVADKN--DGENFVLHDGPPYANGNLHMG----HAL-NKILKDIINRYKLLQ 186
LR A +N ++ G + + + + +
Sbjct: 133 RLQPYLKLRQALLELRPAKNVLID-G---------VLGSGKTWVALDVCLS--YKVQCKM 180
Query: 187 NYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRAKAAKFAKATVKAQMASFKRY 246
++K+ ++ +C+ L++LQ L + T + K +++A+ +R
Sbjct: 181 DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE---LRRL 237
Query: 247 GVWADWNNPYLTLDPEYEAAQIEVFG---QM-----------SLQGYIYRGKKPVHWSPS 292
+ N L L A F ++ L H S +
Sbjct: 238 LKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT 297
Query: 293 SRTALAEAELEYPEGHVSRSIYAVF----------RMVSAPPSTSGLLNEFLPDLGLAVW 342
L E +S+ + +++ P ++ E + D GLA W
Sbjct: 298 ----LTPDE--------VKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRD-GLATW 344
Query: 343 TTTPWTVPANAAVAVNAKLQYAVVEIQSLLEGDSAAPANKKSRPGNVLK--DQKKVF--- 397
W ++ +++E NVL+ + +K+F
Sbjct: 345 DN--W-------------KHVNCDKLTTIIESSL-----------NVLEPAEYRKMFDRL 378
Query: 398 -IIVASDLVP--TLEAKWG-----------TKLVIKKTLAGSDLENCRY-VHPV--DNRQ 440
+ S +P L W KL K +L + + + + +
Sbjct: 379 SVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLH-KYSLVEKQPKESTISIPSIYLELKV 437
Query: 441 CPVVIGGDYITTESGTGLVHTAPGHGQ--EDYVTSLKYGLPILSPVDDEGKF-------- 490
E+ L H + Y + L P + F
Sbjct: 438 ----------KLENEYAL------HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHL 481
Query: 491 --TEEAGKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTKKPTIFRATEQW 548
E + + ++ +LD + + +K I + W
Sbjct: 482 KNIEHPERMTLFRMV---------FLD----------------FRFLEQK--IRHDSTAW 514
Query: 549 FASVEGFRQAAMDAIGQVK 567
A + ++ + Q+K
Sbjct: 515 NA-----SGSILNTLQQLK 528
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus}
PDB: 2ct8_A*
Length = 497
Score = 68.0 bits (167), Expect = 5e-12
Identities = 37/129 (28%), Positives = 53/129 (41%), Gaps = 24/129 (18%)
Query: 160 YANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDL 219
Y N H+GHA I D I RY L++Y V ++ G D HGL I+ K + +
Sbjct: 15 YVNDVPHLGHAYTTIAADTIARYYRLRDYDVFFLTGTDEHGLKIQKKA-------EELGI 67
Query: 220 TPSKLRAKAAKFAKATVKAQMASFKRYGVWADWNNPY----LTLDPEYEAAQIEVFGQMS 275
+P K V FK+ +W Y T DP + +VF +
Sbjct: 68 SP-----------KELVDRNAERFKK--LWEFLKIEYTKFIRTTDPYHVKFVQKVFEECY 114
Query: 276 LQGYIYRGK 284
+G IY G+
Sbjct: 115 KRGDIYLGE 123
Score = 35.7 bits (83), Expect = 0.063
Identities = 24/112 (21%), Positives = 41/112 (36%), Gaps = 22/112 (19%)
Query: 641 DQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFD------VAKDRLYTG 694
D+ + +KN E F+K + I +F N Y D + K+R
Sbjct: 375 DEEYAKIAQESIKNYENYMEKVNFYKAIEEILKFT--SYLNKYVDEKQPWALNKER---- 428
Query: 695 GTTSFTRRSCQTVLSAHLLSIVRVIA----PILPHLAEDVWQNLPFAYTLED 742
+ Q VL L+ + V+ PI P+ ++ Q L L++
Sbjct: 429 -----KKEELQKVL-YALVDGLFVLTHLLYPITPNKMKEALQMLGEKEFLKE 474
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase,
structural genomics, NPPSFA; 1.80A {Thermus
thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A
2d54_A
Length = 500
Score = 66.9 bits (164), Expect = 1e-11
Identities = 29/129 (22%), Positives = 44/129 (34%), Gaps = 24/129 (18%)
Query: 160 YANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDL 219
Y N H+GHA ++ D + R+ L Y+ ++ G D HG +
Sbjct: 13 YVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAA-------QAAGE 65
Query: 220 TPSKLRAKAAKFAKATVKAQMASFKRYGVWADWNNPY----LTLDPEYEAAQIEVFGQMS 275
P KA V FKR W Y T + ++ V ++
Sbjct: 66 DP-----------KAFVDRVSGRFKR--AWDLLGIAYDDFIRTTEERHKKVVQLVLKKVY 112
Query: 276 LQGYIYRGK 284
G IY G+
Sbjct: 113 EAGDIYYGE 121
Score = 36.4 bits (85), Expect = 0.031
Identities = 14/121 (11%), Positives = 33/121 (27%), Gaps = 29/121 (23%)
Query: 641 DQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFD------VAKD---RL 691
L + + +R +F + V N Y + + K
Sbjct: 377 AGEELAEGTGLAGRLRPLVRELKFHVALEEA--MAYVKALNRYINEKKPWELFKKEPEEA 434
Query: 692 YTGGTTSFTRRSCQTVLSAHLLSIVRVIA----PILPHLAEDVWQNLPFAYTLEDGSAAE 747
+ VL ++ +R+ + P +P ++ + L + A
Sbjct: 435 -------------RAVL-YRVVEGLRIASILLTPAMPDKMAELRRALGLKEEVRLEEAER 480
Query: 748 F 748
+
Sbjct: 481 W 481
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein
biosynthesis, ligase, aminoacyl- synthetase; HET: ADN
CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Length = 524
Score = 66.5 bits (163), Expect = 2e-11
Identities = 33/129 (25%), Positives = 49/129 (37%), Gaps = 24/129 (18%)
Query: 160 YANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDL 219
Y NG H+GHA I D I R+K L Y VRY+ G D HG + AK+ +
Sbjct: 22 YPNGVPHIGHAYEYIATDAIARFKRLDGYDVRYLTGTDVHGQKMAETA-------AKEGI 74
Query: 220 TPSKLRAKAAKFAKATVKAQMASFKRYGVWADWNNPY----LTLDPEYEAAQIEVFGQMS 275
+ F+R + N + T D ++ A ++ +M+
Sbjct: 75 PA-----------AELARRNSDVFQR--LQEKLNISFDRFIRTSDADHYEASKAIWKRMA 121
Query: 276 LQGYIYRGK 284
G IY
Sbjct: 122 DAGDIYLDA 130
Score = 36.9 bits (86), Expect = 0.025
Identities = 25/155 (16%), Positives = 49/155 (31%), Gaps = 27/155 (17%)
Query: 620 LGNL--------HDWRVGNSISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQII 671
LGNL + D L + +++ +RE ++ + I
Sbjct: 366 LGNLAQRSLSMVAKNLGAAVPDPGEFTDEDTALLAAADALLERVREHFDVPAMHLALEAI 425
Query: 672 QRFIIVDLSNFYFD------VAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIA----P 721
+ +N YF + K + ++ +TVL L +VR+ + P
Sbjct: 426 WSVL--GAANRYFSAQEPWVLRKS------DAAEDQQRFRTVL-YTTLEVVRIASLLLQP 476
Query: 722 ILPHLAEDVWQNLPFAYTLEDGSAAEFVFESKWPV 756
++P + L D SA + +
Sbjct: 477 VMPESTAKLLDLLGQPTDERDFSAIANRIKPGTSL 511
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class
IA:methionyl-tRNA...; structural genomics; 2.65A
{Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Length = 536
Score = 66.5 bits (163), Expect = 2e-11
Identities = 29/129 (22%), Positives = 50/129 (38%), Gaps = 24/129 (18%)
Query: 160 YANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDL 219
Y NG H+GHA I D + R++ L V ++ G D HG+ + K+ +
Sbjct: 35 YPNGKPHIGHAYELIATDAMARFQRLNGMDVYFLTGTDEHGIKMLQSA-------RKEGI 87
Query: 220 TPSKLRAKAAKFAKATVKAQMASFKRYGVWADWNNPY----LTLDPEYEAAQIEVFGQMS 275
TP + ++F+R + N+ T + + A ++ M
Sbjct: 88 TP-----------RDLADRNTSAFRR--MAEVLNSSNDDYIRTSEERHYKASQAIWQAMV 134
Query: 276 LQGYIYRGK 284
G IY+G
Sbjct: 135 ANGDIYKGG 143
Score = 35.7 bits (83), Expect = 0.062
Identities = 24/136 (17%), Positives = 40/136 (29%), Gaps = 37/136 (27%)
Query: 620 LGNL--------HDWRVGNSISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQII 671
LGNL G D+ L Q + ++ R++ + I
Sbjct: 377 LGNLAQRSLSMIAKNCEGKVPQPGAFSEADKAILDQADAALETARKAMDDQALHLALGAI 436
Query: 672 QRFIIVDLSNFYFD------VAKD---RLYTGGTTSFTRRSCQTVLSAHLLSIVRVIA-- 720
+ +N YF + K R+ TVL ++R +
Sbjct: 437 FAVV--AEANRYFAGQEPWALRKTDPARM-------------GTVL-YVTAEVLRRVGIM 480
Query: 721 --PILPHLAEDVWQNL 734
P +P AE + L
Sbjct: 481 VQPFIPQSAEKLLDIL 496
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A
{Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Length = 722
Score = 66.7 bits (163), Expect = 2e-11
Identities = 35/144 (24%), Positives = 60/144 (41%), Gaps = 21/144 (14%)
Query: 159 PYANGNLHMGHALNKILK-DIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKK 217
PYANG +H GH L DI RY L+ V ++ G D HG PI + A K
Sbjct: 11 PYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFR--------ALK 62
Query: 218 D-LTPSKLRAKAAKFAKATVKAQMASFKRYGVWADWNNPYLTLDPE-YEAAQIEVFGQMS 275
+ +P ++ +F + +F+R + ++ T P Y+ +Q E F +
Sbjct: 63 EGRSPREI---VDEF----HEQIKITFQRAKI--SFDFFGRTELPIHYKLSQ-EFFLKAY 112
Query: 276 LQGYIYRGKKPVHWSPSSRTALAE 299
G++ + + + L +
Sbjct: 113 ENGHLVKKVTKQAYCEHDKMFLPD 136
Score = 42.4 bits (100), Expect = 6e-04
Identities = 25/112 (22%), Positives = 44/112 (39%), Gaps = 23/112 (20%)
Query: 633 SYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFD------V 686
+L +D+ AL ++E K + E +Y+F + + + N YFD
Sbjct: 421 ERGELDELDREALEEIEKAFKEVGELIMNYRFKDALKRV--MSLASFGNRYFDHKQPWKT 478
Query: 687 AKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIA----PILPHLAEDVWQNL 734
AK+ + T ++ L IV+ + P LP +E +W L
Sbjct: 479 AKE----------DKVRTGTTVN-ISLQIVKALGILLEPFLPDASEKIWHLL 519
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase,
tRNA ligase metrs, methionine, translation, ATP-binding;
HET: ME8; 2.00A {Leishmania major}
Length = 564
Score = 64.2 bits (157), Expect = 9e-11
Identities = 27/129 (20%), Positives = 56/129 (43%), Gaps = 24/129 (18%)
Query: 160 YANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDL 219
Y N + H+GH + ++ D++ RY ++ +V + G D HG + AK+ +
Sbjct: 36 YVNASPHIGHVYSTLIVDVLGRYHRVKGEEVFVMTGTDEHGQKVAEAA-------AKQGV 88
Query: 220 TPSKLRAKAAKFAKATVKAQMASFKRYGVWADWNNPY----LTLDPEYEAAQIEVFGQMS 275
+P + + FK+ + + N T +P +E +++ +++
Sbjct: 89 SP-----------MDFTTSVSSEFKQ--CFQEMNYDMNYFIRTTNPTHEKLVQDIWKKLA 135
Query: 276 LQGYIYRGK 284
+G IY GK
Sbjct: 136 AKGDIYLGK 144
Score = 35.7 bits (83), Expect = 0.064
Identities = 24/135 (17%), Positives = 40/135 (29%), Gaps = 36/135 (26%)
Query: 620 LGNL-------HDWRVGNSISYDDLPMIDQYALFQLENIVKNIRESYESYQFFKIFQIIQ 672
LGNL G + D+ + L N+ + Y I
Sbjct: 395 LGNLVSRCVAPKINVNGMWPEPAEYSESDKTLIASLNNLAGTVDHYYCLPDIQHALIAI- 453
Query: 673 RFIIVDLSNFYFD------VAKD---RLYTGGTTSFTRRSCQTVLSAHLLSIVRVIA--- 720
F ++ N Y + K RL TVL + +R+
Sbjct: 454 -FDVLRSLNAYVTENAPWKLVKMDTARL-------------GTVL-YVTMEGLRICTMFL 498
Query: 721 -PILPHLAEDVWQNL 734
P++P A+++ L
Sbjct: 499 QPVMPQKAKEIMDAL 513
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA
synthetase, ATP-binding, ligas binding,
nucleotide-binding, protein biosynthesis; HET: CIT;
1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A
3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A*
1pg2_A* 1qqt_A 1mea_A 1med_A
Length = 560
Score = 63.4 bits (155), Expect = 1e-10
Identities = 30/126 (23%), Positives = 62/126 (49%), Gaps = 20/126 (15%)
Query: 159 PYANGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKD 218
PYANG++H+GH L I D+ RY+ ++ ++V ++ D HG PI LK A++
Sbjct: 27 PYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLK--------AQQL 78
Query: 219 -LTPSKLRAKAAKFAKATVKAQMASFKRYGVWADWNNPYLTLDPE-YEAAQIEVFGQMSL 276
+TP ++ + + + F + + ++N + T E + ++ ++ ++
Sbjct: 79 GITPEQM---IGEMS----QEHQTDFAGFNI--SYDNYHSTHSEENRQLSE-LIYSRLKE 128
Query: 277 QGYIYR 282
G+I
Sbjct: 129 NGFIKN 134
Score = 41.4 bits (98), Expect = 0.001
Identities = 22/101 (21%), Positives = 35/101 (34%), Gaps = 13/101 (12%)
Query: 640 IDQYALFQLENIVKNIRESYESYQFFKIFQIIQRFIIVDLSNFYFDVAKD-RLYTGGTTS 698
D + + I E++ES +F K + I + DL+N Y D +
Sbjct: 426 ADPQLYKTFTDAAEVIGEAWESREFGKAVREI--MALADLANRYVDEQAPWVVAK---QE 480
Query: 699 FTRRSCQTVLS-----AHLLSIVRVIAPILPHLAEDVWQNL 734
Q + S +L + P+LP L E L
Sbjct: 481 GRDADLQAICSMGINLFRVLMTY--LKPVLPKLTERAEAFL 519
>1wka_A Valyl-tRNA synthetase; editing, CP1, fidelity, thermus thrmophilus,
translation, amino acid, structural genomics; 1.70A
{Thermus thermophilus} SCOP: b.51.1.1 PDB: 1wk9_A*
Length = 147
Score = 57.1 bits (139), Expect = 6e-10
Identities = 27/106 (25%), Positives = 42/106 (39%), Gaps = 12/106 (11%)
Query: 431 RYVH--------PVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPILS 482
RY H P+ P+ + + + GTG + P H DY ++GL +S
Sbjct: 43 RYRHLLGKRARIPLTEVWIPI-LADPAVEKDFGTGALKVTPAHDPLDYEIGERHGLKPVS 101
Query: 483 PVDDEGKFTEE--AGKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPY 526
++ EG+ E GLD + V+ E L+ EE Y
Sbjct: 102 VINLEGRMEGERVPEALRGLDRF-EARRKAVELFREAGHLVKEEDY 146
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 62.0 bits (150), Expect = 8e-10
Identities = 103/633 (16%), Positives = 182/633 (28%), Gaps = 231/633 (36%)
Query: 104 GRYKHTVDLPKTTFGMRANALVREPEIHKLWDDHQVFLRVADKNDGENFVLHDGPPYANG 163
G +H + +P +F A L + F ++ + E F D P
Sbjct: 14 GSLEHVLLVPTASFF---IASQ-------LQEQ---FNKILPEPT-EGFAADD-EPTTPA 58
Query: 164 NLH---MGHALNKILKDIINRYK-----LLQNYKVRYVPGWDCHGLPIELKVLQSLDEDA 215
L +G+ + + + ++ L ++ Y+ G D H L L ++
Sbjct: 59 ELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHAL------AAKLLQEN 112
Query: 216 KKDLTPSKLRAKAAKFAKATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQIE------ 269
L +K K A+ K +N L + A
Sbjct: 113 DTTLVKTKELIKNYITARIMAKRPFDK---------KSNSAL-----FRAVGEGNAQLVA 158
Query: 270 VFGQMSLQGYI--YRGKKPVHWSPSSRTALAEAELEYPEGHVSRSIYAVFRMVSAP--PS 325
+FG QG Y + EL R +Y + ++
Sbjct: 159 IFGG---QGNTDDY-------FE----------EL--------RDLYQTYHVLVGDLIKF 190
Query: 326 TSGLLNEFLPD---------LGLAV--WTTTPWTVPAN---AAVAVNAKL-------QYA 364
++ L+E + GL + W P P ++ ++ L Y
Sbjct: 191 SAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYV 250
Query: 365 VV---------EIQSLLEGDS---------AAPANKKSRP---GNVLKDQKKVFIIVA-- 401
V E++S L+G + A A S +V K +F I
Sbjct: 251 VTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRC 310
Query: 402 ------SDLVPT-----LEAKWGTK---LVIKKTLAGSDLENCRYVHPVDNRQCP----- 442
+ L P+ LE G L I L ++ YV+ N P
Sbjct: 311 YEAYPNTSLPPSILEDSLENNEGVPSPMLSISN-LTQEQVQ--DYVNKT-NSHLPAGKQV 366
Query: 443 ----------VVIGGDYITTESGTGLVHT-----APG--------HGQEDYVTSLKYGLP 479
+V+ G +S GL T AP + S ++ LP
Sbjct: 367 EISLVNGAKNLVVSG---PPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRF-LP 422
Query: 480 ILSPVDDEGKFTEEAGKFSGLDVLGDGNVAVVKYLDEQMSLIMEEPYEHKYPYDWRTKKP 539
+ SP F S L LI ++ ++ ++ + +
Sbjct: 423 VASP------F------HS-------------HLLVPASDLINKDLVKNNVSFNAKDIQI 457
Query: 540 TIFRATEQWFASVEGFRQAA-------MDAI--GQVKWVPPQEAPGYGADVLRLWVSSVD 590
++ T R + +D I VKW + + A + +D
Sbjct: 458 PVY-DTFDG----SDLRVLSGSISERIVDCIIRLPVKW---ETTTQFKA----THI--LD 503
Query: 591 YTGDVMIGPQVLRQMSD-IYRKLRGT-LRYLLG 621
+ GP + +R GT +R ++
Sbjct: 504 F------GPGGASGLGVLTHRNKDGTGVRVIVA 530
Score = 45.0 bits (106), Expect = 1e-04
Identities = 63/362 (17%), Positives = 104/362 (28%), Gaps = 120/362 (33%)
Query: 8 FASNSSVSTPREATIAMMQSSSYRVLSRR---TCSSFRKK---ASVNL------------ 49
S +S P I ++Q + Y V ++ T R A+ +
Sbjct: 231 LLS-IPISCP---LIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAET 286
Query: 50 -----FDSRGSSSLKFLSFLNVTC---YSICSGD-EFCSSSKRRSRG---PVMAAKKAAE 97
F ++ L F+ V C Y S S + G P M +
Sbjct: 287 DSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSP-MLS---IS 342
Query: 98 GEKKEEGRYKHTVDLPKTTFGMRANALVREPEIHKLWDDHQVFLRVADKNDGENFVLHDG 157
+E+ + + V+ + N+ P + ++ N +N V+ G
Sbjct: 343 NLTQEQVQ-DY-VN--------KTNS--HLPA-----GKQ---VEISLVNGAKNLVV-SG 381
Query: 158 PPYANGNLHMGHALNKILKDIINRYKLLQNYKVRY---VPGWDCHGLPIELKVLQSLDED 214
PP + L+ LN L+ L Q+ ++ + + LP+
Sbjct: 382 PPQS---LY---GLNLTLRKAKAPSGLDQS-RIPFSERKLKFSNRFLPV----------- 423
Query: 215 AKKDLTP--SKLRAKAAKFAKATVKAQMASFKRYGVWADWNNP-YLTLD----PEYEAAQ 267
+P S L A+ + SF D P Y T D +
Sbjct: 424 ----ASPFHSHLLVPASDLINKDLVKNNVSFNA----KDIQIPVYDTFDGSDLRVLSGSI 475
Query: 268 IEVFGQMSLQGYIYRGKKPVHWSPSSRTALAEAELEYPEGHVSRSIYAVFRMVSAPPSTS 327
E I R PV W E ++ H+ F P S
Sbjct: 476 SERIVDC-----IIR--LPVKW---------ETTTQFKATHI-----LDF----GPGGAS 510
Query: 328 GL 329
GL
Sbjct: 511 GL 512
Score = 42.7 bits (100), Expect = 6e-04
Identities = 65/439 (14%), Positives = 112/439 (25%), Gaps = 198/439 (45%)
Query: 118 GMRANALVREPEIHKLWDDHQVFLRVADKNDGENF------VLHDGPPYANGNLHMGHAL 171
GM + +W+ AD + + + ++ + P N +H G
Sbjct: 1630 GMGMDLYKTSKAAQDVWNR-------ADNHFKDTYGFSILDIVINNPV--NLTIHFGGEK 1680
Query: 172 NKILKDIINRYKLLQNY-KVRYVPGWDCHGLPIELKVLQSLDEDAKKDLT---P-SKLRA 226
K ++ +NY + + D G K+ + ++E + T L
Sbjct: 1681 GK---------RIRENYSAMIFETIVD--GKLKTEKIFKEINEHSTS-YTFRSEKGLL-- 1726
Query: 227 KAAKFAKATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQIEVFGQMSLQGYIYRGKKP 286
AT Q A L E A E L+ +G P
Sbjct: 1727 ------SATQFTQPALT-------------LM-----EKAAFED-----LKS---KGLIP 1754
Query: 287 VHWSPSSRTALAEAELEYPEGHVSRSI--YAVFRMVSAPPSTSGLLNEFLPDLGLAVWTT 344
+ A GH S+ Y +A S + +++ + V
Sbjct: 1755 ------ADATFA--------GH---SLGEY------AALASLADVMS--IES---LV--- 1783
Query: 345 TPWTVPANAAVAVNAKLQYAVVEIQSLLEGDSAAPANKKSRPGNVLK--DQKKVFIIVAS 402
V V L + A PG V Q+ + +V
Sbjct: 1784 --------EVVFYRGMTMQVAVPRDELGRSNYGMIAI---NPGRVAASFSQEALQYVVER 1832
Query: 403 DLVPTLEAKWGTKLVIKKTLAGSDLE----NCRYVHPVDNRQCPVVIGGDYITTESGTGL 458
V K+T G +E N +N+Q V GD
Sbjct: 1833 --------------VGKRT--GWLVEIVNYNV------ENQQ--YVAAGD---------- 1858
Query: 459 VHTAPGHGQEDYVTSLKYGLPILSPVDDEGKFTEEAGKFSGLDVLGD-------GNVAVV 511
LD + + + ++
Sbjct: 1859 --------------------------------------LRALDTVTNVLNFIKLQKIDII 1880
Query: 512 KYLDEQMSLIMEEPYEHKY 530
+ L + +SL EE H +
Sbjct: 1881 E-LQKSLSL--EEVEGHLF 1896
Score = 40.4 bits (94), Expect = 0.003
Identities = 33/162 (20%), Positives = 45/162 (27%), Gaps = 69/162 (42%)
Query: 636 DLPMIDQYALFQLENIVKN----------------IRESYESYQF----------FKIFQ 669
D D Y F + +IV N IRE+Y + F KIF+
Sbjct: 1650 DNHFKDTYG-FSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFK 1708
Query: 670 IIQRFIIVDLSNFYFDVAKDRLYTGGTTSFTRRSCQTVLSAHLLSIVRVIAPILPHLAED 729
I +++ F K L T FT Q L+ + L
Sbjct: 1709 EINE----HSTSYTFRSEKGLLS---ATQFT----QPALTLMEKAAFED-------LKS- 1749
Query: 730 VWQNLP----FA------YT----------LEDGSAAEFVFE 751
+P FA Y +E E VF
Sbjct: 1750 -KGLIPADATFAGHSLGEYAALASLADVMSIES--LVEVVFY 1788
Score = 39.3 bits (91), Expect = 0.006
Identities = 73/521 (14%), Positives = 155/521 (29%), Gaps = 191/521 (36%)
Query: 7 SFASNSSVSTPREATIAMMQS--SSY---RVLSRRTCSSFRKKASVNLFDS--RGSSSLK 59
+ A+ + + T+ + +Y R++++R F KK++ LF + G++ L
Sbjct: 103 ALAA--KLLQENDTTLVKTKELIKNYITARIMAKR---PFDKKSNSALFRAVGEGNAQL- 156
Query: 60 FLSFLNVTCYSICSG--------DEFCSSSKRRSR----GPVMAA--KKAAE-------G 98
+I G +E R ++ K +AE
Sbjct: 157 ---------VAIFGGQGNTDDYFEEL------RDLYQTYHVLVGDLIKFSAETLSELIRT 201
Query: 99 EKKEEGRYKHTVDL----------PKTTFGMRANALVREPEI------HKLWDDHQVFLR 142
E + +++ P + + + P I H + V +
Sbjct: 202 TLDAEKVFTQGLNILEWLENPSNTPDKDY--LLSIPISCPLIGVIQLAH-----YVVTAK 254
Query: 143 VADKNDGENFVLHDGPPYANGNLHMGHALNKILKDII------------NRYKLLQNYKV 190
+ GE Y G GH+ + ++ + + ++ +
Sbjct: 255 LLGFTPGELR------SYLKGAT--GHS-----QGLVTAVAIAETDSWESFFVSVRKA-I 300
Query: 191 RYV--PGWDCHG----LPIELKVLQ-SLDEDAK--------KDLTPSKLRAKAAKFAKAT 235
+ G C+ + +L+ SL+ + +LT +++ K
Sbjct: 301 TVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKT---- 356
Query: 236 VKAQMASFKRYGVWADWNNPYLTLDPEYEAAQIEVF---------G-QMSLQGYI--YRG 283
N +L P + +I + G SL G R
Sbjct: 357 ------------------NSHL---PAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRK 395
Query: 284 KKPVHWSPSSRTALAEAELEYPEGHVSRSIYAVFRMVSAP-------PSTSGLLNEFL-- 334
K SR +E +L+ F V++P P++ + + +
Sbjct: 396 AKAPSGLDQSRIPFSERKLK---------FSNRFLPVASPFHSHLLVPASDLINKDLVKN 446
Query: 335 ------PDLGLAVWTTTPWTVPANAAVAVNAKLQYAVVEIQSLLEGDSAAPANKKSR--- 385
D+ + V+ T + + +++ ++ ++ + E K +
Sbjct: 447 NVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWE---TTTQFKATHILD 503
Query: 386 --PGNV---------LKDQKKVFIIVASDLVPTLEAKWGTK 415
PG KD V +IVA L + +G K
Sbjct: 504 FGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINPDDDYGFK 544
Score = 37.0 bits (85), Expect = 0.027
Identities = 33/210 (15%), Positives = 60/210 (28%), Gaps = 80/210 (38%)
Query: 545 TEQWF-ASV--EGFRQAAMDAIGQVKWVPPQEAPGYGAD-----VLRLWVSSVDYTGDVM 596
T +F AS E F + P+ G+ AD L + Y +
Sbjct: 24 TASFFIASQLQEQFNKIL-----------PEPTEGFAADDEPTTPAELVGKFLGYVSSL- 71
Query: 597 IGPQVLRQMSDIYRKLRGTLR-----YLLGN-LHDWRVGNSISYDDLPMIDQ-------- 642
+ P + Q + L L YL GN +H + +D ++
Sbjct: 72 VEPSKVGQFDQV---LNLCLTEFENCYLEGNDIHA-LAAKLLQENDTTLVKTKELIKNYI 127
Query: 643 -----------------------------YALF--Q--LENIVKNIRESYESYQFFKIFQ 669
A+F Q ++ + +R+ Y++Y
Sbjct: 128 TARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVL---- 183
Query: 670 IIQRFIIV---DLSNFYFDVAK-DRLYTGG 695
+ I LS ++++T G
Sbjct: 184 -VGDLIKFSAETLSELIRTTLDAEKVFTQG 212
Score = 31.2 bits (70), Expect = 1.7
Identities = 63/356 (17%), Positives = 104/356 (29%), Gaps = 117/356 (32%)
Query: 485 DDE--------GKF---------TEEAGKFSGL----------DVLGDGNV-AVVKYLDE 516
DDE GKF + G+F + L ++ A+ L +
Sbjct: 51 DDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQ 110
Query: 517 QMSLIMEEPYE--HKYPYDWR--TKKPTIFRATEQWFASVEGFRQAAMDAI--GQVKWVP 570
+ + + E Y R K+P ++ F +V A + AI GQ
Sbjct: 111 ENDTTLVKTKELIKNY-ITARIMAKRPFDKKSNSALFRAVGE-GNAQLVAIFGGQ----- 163
Query: 571 PQEAPGYGADVLRLWVSSVDYTGDVMIGPQVLRQMSDIYRKL--------RGTLRYLLGN 622
G ++ DY + LR + Y L TL L+
Sbjct: 164 -------G--------NTDDYFEE-------LRDLYQTYHVLVGDLIKFSAETLSELIRT 201
Query: 623 LHDWRVGNSISYDDLPMIDQYALFQ-LENIVKNIRESY-ESYQF-FKIFQIIQRFIIVDL 679
D + + + + LEN + Y S + +IQ L
Sbjct: 202 TLDAEKVFTQGLN---------ILEWLENPSNTPDKDYLLSIPISCPLIGVIQ------L 246
Query: 680 SNFYFDVAKDRLYTGGTTSFTRRSCQTVLSAHLLSIV--RVIAPILPHLAEDVWQNLPFA 737
++ Y AK G T RS + H +V IA D W++
Sbjct: 247 AH-YVVTAK----LLGFTPGELRSYLKGATGHSQGLVTAVAIA------ETDSWESF--- 292
Query: 738 YTLEDGSAAEFVFESKWPVLDEKWRTFPVGEIYFWGKILEVIVVVTYLNETEGFSS 793
+ A +F + + + +P L ++ L EG S
Sbjct: 293 FVSVR-KAITVLF---FIGV-RCYEAYPNTS-------LPPSILEDSLENNEGVPS 336
>2ajg_A Leucyl-tRNA synthetase; editing domain, ligase; 2.00A {Escherichia
coli} PDB: 2ajh_A 2aji_A
Length = 196
Score = 51.0 bits (123), Expect = 2e-07
Identities = 31/99 (31%), Positives = 44/99 (44%), Gaps = 16/99 (16%)
Query: 433 VHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPI---LSPVD-DEG 488
VHP+ + PV +++ E GTG V PGH Q DY + KYGL I + D E
Sbjct: 93 VHPLTGEEIPVWAA-NFVLMEYGTGAVMAVPGHDQRDYEFASKYGLNIKPVILAADGSEP 151
Query: 489 KFTEEA----------GKFSGLDVLGDGNVAVVKYLDEQ 517
+++A G+F+GLD A+ L
Sbjct: 152 DLSQQALTEKGVLFNSGEFNGLDH-EAAFNAIADKLTAM 189
>3o0a_A Leucyl-tRNA synthetase subunit alpha; CP1 hydrolytic DOM ligase,
aminoacyl-tRNA synthetase, ATP-binding, nucleotide-
protein biosynthesis; 1.77A {Aquifex aeolicus} PDB:
3pz0_A 3pz5_A
Length = 219
Score = 50.0 bits (120), Expect = 6e-07
Identities = 25/98 (25%), Positives = 40/98 (40%), Gaps = 16/98 (16%)
Query: 433 VHPVDNRQCPVVIGGDYITTESGTGLVHTAPGHGQEDYVTSLKYGLPILSPV---DDEGK 489
+P + + PV +Y+ E GTG + P H Q D+ + KY LPI V +
Sbjct: 114 TNPANGEKIPVWSA-NYVLYEYGTGAIMCVPAHDQRDWEFAKKYDLPIK-VVVKPEGAWD 171
Query: 490 FTEEA----------GKFSGLDVLGDGNVAVVKYLDEQ 517
F + A F GLD + ++L ++
Sbjct: 172 FEKGAYEGKGTLVNSDGFDGLDS-ETAKRKITEWLQDR 208
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 35.3 bits (80), Expect = 0.031
Identities = 12/37 (32%), Positives = 16/37 (43%), Gaps = 8/37 (21%)
Query: 233 KATVKAQMASFKRYGVWADWNNPYLTLDPEYEAAQIE 269
K +K AS K Y AD + P L + A +E
Sbjct: 19 KQALKKLQASLKLY---ADDSAPALAIK-----ATME 47
Score = 33.0 bits (74), Expect = 0.17
Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 12/41 (29%)
Query: 264 EAAQIEVFGQMSLQGYIYRGKKPVHWSPSSRTALA-EAELE 303
E ++ Q SL+ Y + S ALA +A +E
Sbjct: 18 EKQALKKL-QASLKLY----------ADDSAPALAIKATME 47
Score = 30.3 bits (67), Expect = 1.3
Identities = 6/33 (18%), Positives = 12/33 (36%), Gaps = 14/33 (42%)
Query: 330 LNEFLPDLGLAVWTTTPWTVPANAAVAVNAKLQ 362
L + D + P A+A+ A ++
Sbjct: 29 LKLYADD-------SAP-------ALAIKATME 47
Score = 27.6 bits (60), Expect = 9.1
Identities = 8/22 (36%), Positives = 11/22 (50%), Gaps = 8/22 (36%)
Query: 367 EIQSL--LEG------DSAAPA 380
E Q+L L+ D +APA
Sbjct: 18 EKQALKKLQASLKLYADDSAPA 39
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 32.7 bits (74), Expect = 0.26
Identities = 10/31 (32%), Positives = 12/31 (38%), Gaps = 7/31 (22%)
Query: 741 EDGSAAEFVFESKWPVLDEK-------WRTF 764
E S + V VL +K WRTF
Sbjct: 36 ERFSEGDVVCALCGLVLSDKLVDTRSEWRTF 66
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA
inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA
synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium
smegmatis}
Length = 414
Score = 33.4 bits (77), Expect = 0.30
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 166 HMGHALNKILKDIINRYKLLQNYKVRYV 193
H+GHA + D+++R L + V+YV
Sbjct: 54 HLGHAATYLTFDLVHRLWLDAGHTVQYV 81
>3zq5_A Phytochrome-like protein CPH1; arginine finger, tandem GAF domain,
receptor, PAS domain, chromophore, sensory transduction;
HET: CYC; 1.95A {Synechocystis SP} PDB: 2vea_A*
Length = 520
Score = 32.7 bits (74), Expect = 0.54
Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Query: 185 LQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRA 226
+ N +R +P D +G+ + L + + DLT S LR+
Sbjct: 217 IHN-PIRVIP--DVYGVAVPLTPAVNPSTNRAVDLTESILRS 255
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, LYME
disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Length = 501
Score = 32.6 bits (75), Expect = 0.60
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 166 HMGHALNKILKDIINRYKLLQNYKVRYV 193
H+G+ I D++ + YKV Y
Sbjct: 57 HIGNFRTYIFGDLLIKTLRFLGYKVNYA 84
>3s7o_A Bacteriophytochrome; biliverdin, PAS, GAF, photoreceptor,
fluorescent protein; HET: LBV GOL; 1.24A {Deinococcus
radiodurans} PDB: 3s7n_A* 3s7p_A* 3s7q_A* 2o9c_A*
2o9b_A* 1ztu_A*
Length = 343
Score = 30.7 bits (69), Expect = 1.6
Identities = 8/42 (19%), Positives = 16/42 (38%), Gaps = 3/42 (7%)
Query: 185 LQNYKVRYVPGWDCHGLPIELKVLQSLDEDAKKDLTPSKLRA 226
++ +R D + L + + +A L + LRA
Sbjct: 231 TRH-LLRLTA--DTRAAAVPLDPVLNPQTNAPTPLGGAVLRA 269
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A
{Coxiella burnetii}
Length = 462
Score = 30.6 bits (70), Expect = 2.4
Identities = 10/28 (35%), Positives = 19/28 (67%)
Query: 166 HMGHALNKILKDIINRYKLLQNYKVRYV 193
H+GH + I+ D++ RY ++ Y+V +V
Sbjct: 40 HIGHGRSWIIFDMVVRYLRMRGYEVTFV 67
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.7 bits (66), Expect = 2.6
Identities = 9/60 (15%), Positives = 19/60 (31%), Gaps = 13/60 (21%)
Query: 83 RRSRGPVMAAKKAAEGEKKEEGR----------YKHTVD-LPKTTFGMRAN--ALVREPE 129
R + + AA ++E R + + + K R A ++P+
Sbjct: 91 REEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPD 150
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine,
E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1
c.26.1.1 PDB: 1li7_A 1u0b_B
Length = 461
Score = 30.2 bits (69), Expect = 2.7
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 166 HMGHALNKILKDIINRYKLLQNYKVRYV 193
H+GH + D++ RY YK++YV
Sbjct: 37 HIGHGRTFVAFDVVARYLRFLGYKLKYV 64
>1rya_A GDP-mannose mannosyl hydrolase; GDP-glucose, nudix, nudix
Mg-complex; HET: GDP; 1.30A {Escherichia coli} SCOP:
d.113.1.5 PDB: 2gt2_A 2gt4_A* 2i8t_A* 2i8u_A*
Length = 160
Score = 28.7 bits (64), Expect = 4.9
Identities = 7/63 (11%), Positives = 14/63 (22%), Gaps = 1/63 (1%)
Query: 516 EQMSLIMEEPYEHKYPY-DWRTKKPTIFRATEQWFASVEGFRQAAMDAIGQVKWVPPQEA 574
+ ++H Y T T + F E + +W+
Sbjct: 76 PITAGQFYGVWQHFYDDNFSGTDFTTHYVVLGFRFRVSEEELLLPDEQHDDYRWLTSDAL 135
Query: 575 PGY 577
Sbjct: 136 LAS 138
>2ftr_A BH0200; structural genomics, joint center for structural genomics,
J protein structure initiative, PSI-2, unknown function;
HET: MSE; 1.40A {Bacillus halodurans} SCOP: d.58.4.15
Length = 108
Score = 27.4 bits (61), Expect = 6.5
Identities = 8/57 (14%), Positives = 17/57 (29%), Gaps = 4/57 (7%)
Query: 513 YLDEQMSLIMEEP----YEHKYPYDWRTKKPTIFRATEQWFASVEGFRQAAMDAIGQ 565
Y + L + P + + + E ++ E +QA G+
Sbjct: 28 YFNTHAPLTRKIPGLRDMKVTRIVGSPMGESKFYLMCEMYYDDHESLQQAMRTDEGK 84
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 29.1 bits (65), Expect = 7.2
Identities = 29/147 (19%), Positives = 46/147 (31%), Gaps = 34/147 (23%)
Query: 155 HDGPPYA--NGNLHMGHALNKILKDIINRYKLLQNYKVRYVPGWDCHGLPIELKVLQSLD 212
P A NG L L + + R +L++ +VR + +E KV+
Sbjct: 719 QKSPVMADLNGGLQFVPELKEFTAKL--RKELVETSEVRKAVSIE---TALEHKVVNGNS 773
Query: 213 EDAKKDLTPSKLRAKAAKFAKATVKAQMASFKRYGVWADWNNPYL--TLDP--------- 261
DA + RA ++ K Y L LD
Sbjct: 774 ADAAYAQVEIQPRA--------NIQLDFPELKPYKQVKQIAPAELEGLLDLERVIVVTGF 825
Query: 262 -EYEAA-------QIEVFGQMSLQGYI 280
E ++E FG+ SL+G +
Sbjct: 826 AEVGPWGSARTRWEMEAFGEFSLEGCV 852
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.135 0.408
Gapped
Lambda K H
0.267 0.0749 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 12,526,180
Number of extensions: 780972
Number of successful extensions: 1665
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1589
Number of HSP's successfully gapped: 74
Length of query: 794
Length of database: 6,701,793
Length adjustment: 101
Effective length of query: 693
Effective length of database: 3,881,772
Effective search space: 2690067996
Effective search space used: 2690067996
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (27.2 bits)