BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003800
(794 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5ZL00|EMC1_CHICK ER membrane protein complex subunit 1 OS=Gallus gallus GN=EMC1 PE=2
SV=1
Length = 983
Score = 246 bits (629), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 219/829 (26%), Positives = 379/829 (45%), Gaps = 105/829 (12%)
Query: 23 LYEDQVGLMDWHQQYIGKVKHAVFHTQKTGRKRVVVSTEENVIASLDLRHGEIFWRHV-- 80
+YEDQVG DW QQY+GK+K A + G K+++V TE+NV+A+L+ R GEI WRH
Sbjct: 16 VYEDQVGKFDWRQQYVGKLKFASLEAAQ-GSKKLLVGTEKNVVAALNSRSGEILWRHADK 74
Query: 81 LGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFL-RGSKHSKPLLLVPTN 139
+D + I G+ IT+SS G LR+W G + WE+ L GS + L+ +
Sbjct: 75 ATPEGAIDAMLIH-GQDAITVSSAGRILRSWETNIGGLNWETSLDTGSFQTASLVGLQDA 133
Query: 140 LKVDKDSLILVSSKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGS 199
+K +L + LH +S +G W Q++ + I+V+G
Sbjct: 134 VKY---VAVLKKAAISLHYLS--NGHQKWVEHLPESENTQYQMLYSRGAGVIHVLGVVPQ 188
Query: 200 SQFHAYQINAMNGELLNHETAAF--------SGGFVGDVALVSSDT------LVTLDTTR 245
S ++ +GE++ A + G VG+ LV +DT + +L+T +
Sbjct: 189 SHLKVLTLSVEDGEVIEQTKVAAPWLKSLNGACGVVGEAVLVCADTATHSLYVCSLETEQ 248
Query: 246 SIL----------VTVSFKNRKIAFQETHLSNLGEDSSGMVEILPSSLTGMFTVKINNYK 295
+ F+ R +A Q + ++ + +++ P G F++
Sbjct: 249 EMKQIPLQSLDLEFADGFQPRVLATQPSVIN--ASRTQFFLQLSP----GHFSLLQCKQG 302
Query: 296 LFIRLTSEDKLEVVH--KVDHETVVSDALVFSEGKEAFAVVEHGGS-----KVDITVKPG 348
L L + +V +TV + +E K A + HG + K +
Sbjct: 303 LLSHLRDFQQAALVSFATTGEKTVAAVLTCRNELKPASSDGLHGNALEDSQKQEALTCSN 362
Query: 349 QDWNNNL-----------VQESIEMDHQRGLVHKVFINNYLRTDRSHGFRALIVMEDHSL 397
Q +N NL + ++ +++I +L+ D S G+RAL+ EDH L
Sbjct: 363 QTYNINLYLVETGQRLLDTTITFNLEQNGAKPEQLYIQVFLKKDDSVGYRALVQTEDHML 422
Query: 398 LLVQQ-GKIVWNREDALASIIDVTTSELPV-----EKEGVSVAKVEHSLFEWLKGHMLKL 451
+ +QQ GK+VW+RE++LA ++ + +LP+ E EG K + L +LK +L
Sbjct: 423 MFLQQPGKVVWSREESLAEVVSLEMVDLPLTGAQAELEGEFGKKADGLLGMFLK----RL 478
Query: 452 KGTLMLASPEDV----AAIQAIRLKSSEKSK-----MTRDHNGFRKLLIVLTKARKIFAL 502
L+L A + +S K++ + RD +K+++++T + K+F +
Sbjct: 479 SSQLILLQAWTAHLWKMFYDARKPRSQIKNEINIDNLARDEFNLQKMMVMVTASGKLFGI 538
Query: 503 HSGDGRVVWSLLLHKSEACDSPTELNLYQWQTPHHHAMDENPSVLVVGRCGVSSKAPAIL 562
S G ++W L S L L +T H ++LV + +K +
Sbjct: 539 ESSSGTILWKQYLRNVRPGAS---LKLMVQRTTAHFPHPPQCTLLVKDK---ETKMSFLY 592
Query: 563 SFVDTYTGK-ELNSFDLVHSAVQVMPLPFTDSTEQRLHLLVDDDRRIHLYPKTSEAISIF 621
F + + ++ L +Q + LP D ++ LL+DD+ ++ +P T +
Sbjct: 593 VFNPIFGKRSQVAPPVLKRPVLQTLLLPIMDQDYAKVLLLIDDEYKVTAFPATKNVLRQL 652
Query: 622 QQEFSNIYWYSVEADNGIIKGHAVKSKCAGEVLDDFCFETRVLWSIIFPMESEKIIAAVS 681
++ +I++Y V+A+ G + G +K T W + P E ++I+
Sbjct: 653 EEMAHSIFFYLVDAEQGKLSGFRLKKD----------LTTEESWQVAIPTEVQRIVTVKG 702
Query: 682 RKQNEVVHTQAKVTSEQDVMYKYISKNLLFVATVAPKASGHIGSADP--DEAWLVVYLID 739
++ +E VH+Q +V ++ V+YK ++ NLL V T S D + ++ +YLID
Sbjct: 703 KRSSEHVHSQGRVMGDRSVLYKSLNPNLLAVVT---------ESTDTHHERTFVGIYLID 753
Query: 740 TITGRILHRMTHHGAQGPVHAVLSENWVVYHYFNLRAHRYEMSVTEIYD 788
+TGRI+H A+GPVH V SENWVVY Y+N +A R E +V E+Y+
Sbjct: 754 GVTGRIIHSSVQKKAKGPVHIVHSENWVVYQYWNTKARRNEFTVLELYE 802
>sp|Q8N766|EMC1_HUMAN ER membrane protein complex subunit 1 OS=Homo sapiens GN=EMC1 PE=1
SV=1
Length = 993
Score = 243 bits (619), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 228/846 (26%), Positives = 388/846 (45%), Gaps = 117/846 (13%)
Query: 14 SSCTIPSLSLYEDQVGLMDWHQQYIGKVKHAVFHTQKTGRKRVVVSTEENVIASLDLRHG 73
++ IP+ ++YEDQVG DW QQY+GKVK A G K++VV+TE+NVIA+L+ R G
Sbjct: 13 ATLLIPAAAVYEDQVGKFDWRQQYVGKVKFASLEFSP-GSKKLVVATEKNVIAALNSRTG 71
Query: 74 EIFWRHVLGINDVVDGIDIAL--GKYVITLSSDGSTLRAWNLPDGQMVWESFL-RGSKHS 130
EI WRHV +D L G+ VIT+S+ G +R+W G + WE L GS +
Sbjct: 72 EILWRHV-DKGTAEGAVDAMLLHGQDVITVSNGGRIMRSWETNIGGLNWEITLDSGSFQA 130
Query: 131 KPLLLVPTNLKVDKDSLILVSSKGCLHAVSSIDGEILWTRDFA-AESVEVQQVIQLDESD 189
L+ + +++ +L + LH +SS G + W ++S+ Q V S
Sbjct: 131 LGLVGLQESVRYIA---VLKKTTLALHHLSS--GHLKWVEHLPESDSIHYQMVYSYG-SG 184
Query: 190 QIYVVGYAGSSQFHAYQINAMNGELLNHE--TAAFSGGFVGDVALVSSDTLVTLDTTRSI 247
++ +G S + + N +GE++ + + G +V LV D +
Sbjct: 185 VVWALGVVPFSHVNIVKFNVEDGEIVQQVRVSTPWLQHLSGACGVVDEAVLVCPDPSSRS 244
Query: 248 LVTVSFKN----RKIAFQETHLSNLGEDSSGM-VEILPSSLTGMFTVKINNYKLFIRLTS 302
L T++ + R+I Q L E SG +LP+ V + + F+ L+
Sbjct: 245 LQTLALETEWELRQIPLQSLDL----EFGSGFQPRVLPTQPN---PVDASRAQFFLHLSP 297
Query: 303 E---------DKLEVVHKVDHETVVSDALV----------------------------FS 325
L ++ +VS A FS
Sbjct: 298 SHYALLQYHYGTLSLLKNFPQTALVSFATTGEKTVAAVMACRNEVQKSSSSEDGSMGSFS 357
Query: 326 E---GKEAFAVVEHGGSKVDITVKPGQDWNNNLVQESIEMDHQRGLVHKVFINNYLRTDR 382
E K++ A + V+ G+ + + S+E R +++I +L+ D
Sbjct: 358 EKSSSKDSLACFNQTYTINLYLVETGRRLLDTTITFSLEQSGTRP--ERLYIQVFLKKDD 415
Query: 383 SHGFRALIVMEDHSLLLVQQ--GKIV-WNREDALASIIDVTTSELPV-----EKEGVSVA 434
S G+RAL+ EDH LL +QQ GK+V W+RE++LA ++ + +LP+ E EG
Sbjct: 416 SVGYRALVQTEDHLLLFLQQLAGKVVLWSREESLAEVVCLEMVDLPLTGAQAELEGEFGK 475
Query: 435 KVEHSLFEWLKGHMLKLKGTLMLASPEDV----AAIQAIRLKSSEKSK-----MTRDHNG 485
K + L +LK +L L+L A + +S K++ + RD
Sbjct: 476 KADGLLGMFLK----RLSSQLILLQAWTSHLWKMFYDARKPRSQIKNEINIDTLARDEFN 531
Query: 486 FRKLLIVLTKARKIFALHSGDGRVVWSLLLHKSEACDSPTELNLYQWQTPHHHAMDENPS 545
+K+++++T + K+F + S G ++W L + S L +T H +
Sbjct: 532 LQKMMVMVTASGKLFGIESSSGTILWKQYLPNVKPDSS---FKLMVQRTTAHFPHPPQCT 588
Query: 546 VLVVGR-CGVSSKAPAILSFVDTYTGK--ELNSFDLVHSAVQVMPLPFTDSTEQRLHLLV 602
+LV + G+SS L + GK ++ L +Q + LP D ++ LL+
Sbjct: 589 LLVKDKESGMSS-----LYVFNPIFGKWSQVAPPVLKRPILQSLLLPVMDQDYAKVLLLI 643
Query: 603 DDDRRIHLYPKTSEAISIFQQEFSNIYWYSVEADNGIIKGHAVKSKCAGEVLDDFCFETR 662
DD+ ++ +P T + + +I++Y V+A+ G + G+ ++ T
Sbjct: 644 DDEYKVTAFPATRNVLRQLHELAPSIFFYLVDAEQGRLCGYRLRKD----------LTTE 693
Query: 663 VLWSIIFPMESEKIIAAVSRKQNEVVHTQAKVTSEQDVMYKYISKNLLFVATVAPKASGH 722
+ W + P E ++I+ ++ +E VH+Q +V ++ V+YK ++ NLL V T + A
Sbjct: 694 LSWELTIPPEVQRIVKVKGKRSSEHVHSQGRVMGDRSVLYKSLNPNLLAVVTESTDAHH- 752
Query: 723 IGSADPDEAWLVVYLIDTITGRILHRMTHHGAQGPVHAVLSENWVVYHYFNLRAHRYEMS 782
+ ++ ++LID +TGRI+H A+GPVH V SENWVVY Y+N +A R E +
Sbjct: 753 ------ERTFIGIFLIDGVTGRIIHSSVQKKAKGPVHIVHSENWVVYQYWNTKARRNEFT 806
Query: 783 VTEIYD 788
V E+Y+
Sbjct: 807 VLELYE 812
>sp|Q5R7K6|EMC1_PONAB ER membrane protein complex subunit 1 OS=Pongo abelii GN=EMC1 PE=2
SV=1
Length = 996
Score = 236 bits (601), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 227/847 (26%), Positives = 386/847 (45%), Gaps = 116/847 (13%)
Query: 14 SSCTIPSLSLYEDQVGLMDWHQQYIGKVKHAVFHTQKTGRKRVVVSTEENVIASLDLRHG 73
++ IP ++YEDQVG DW QQY+GK+K A G K++VV+TE+NVIA+L+ R G
Sbjct: 13 AALLIPVAAVYEDQVGKFDWRQQYVGKLKFASLEFSP-GSKKLVVATEKNVIAALNSRTG 71
Query: 74 EIFWRHVLGINDVVDGIDIAL--GKYVITLSSDGSTLRAWNLPDGQMVWESFL-RGSKHS 130
EI WRHV +D L G+ VIT+S+ G +R+W G + WE L GS +
Sbjct: 72 EILWRHV-DKGTAEGAVDAMLLHGQDVITVSNGGRIMRSWETNIGGLNWEITLDTGSFQA 130
Query: 131 KPLLLVPTNLKVDKDSLILVSSKGCLHAVSSIDGEILWTRDFA-AESVEVQQVIQLDESD 189
L+ + +++ +L + LH +SS G + W ++S+ Q V S
Sbjct: 131 LGLVGLQESVRYIA---VLKKTTLALHHLSS--GHLKWVEHLPESDSIHYQMVYSYG-SG 184
Query: 190 QIYVVGYAGSSQFHAYQINAMNGELLNHE--TAAFSGGFVGDVALVSSDTLVTLDTTRSI 247
++ +G S + + N +GE++ + + G +V LV D +
Sbjct: 185 VVWALGVVPFSHVNIVKFNVEDGEIVQQVRVSTPWLQHLSGACGVVDEAVLVCPDPSSRS 244
Query: 248 LVTVSFKN----RKIAFQETHLSNLGEDSSGM-VEILPSSLTGMFTVKINNYKLFIRLTS 302
L T++ + R+I Q L E SG +LP+ V + + F+ L+
Sbjct: 245 LQTLALETEWELRQIPLQSLDL----EFGSGFQPRVLPTQPN---PVDASRAQFFLHLSP 297
Query: 303 EDK---------LEVVHKVDHETVVSDALV----------------------------FS 325
L ++ +VS A FS
Sbjct: 298 SHYALLQYHYGILSLLKNFPQTALVSFATTGEKTVAAVMACRNEVQKTSNSEDGSMGSFS 357
Query: 326 E---GKEAFAVVEHGGSKVDITVKPGQDWNNNLVQESIEMDHQRGLVHKVFINNYLRTDR 382
E K++ A + V+ G+ + S+E R +++I +L+ D
Sbjct: 358 EKSSSKDSLACFNQTYTINLYLVETGRRLLDTTTTFSLEQSGTRP--ERLYIQVFLKKDD 415
Query: 383 SHGFRALIVMEDHSLLLVQQ--GKIV-WNREDALASIIDVTTSELPV-----EKEGVSVA 434
S G+RAL+ EDH LL +QQ GK+V W+RE++LA ++ + +LP+ E EG
Sbjct: 416 SVGYRALVQTEDHLLLFLQQLAGKVVLWSREESLAEVVCLEMVDLPLTGAQAELEGEFGK 475
Query: 435 KVEHSLFEWLKGHMLK-LKGTLMLASPEDV----AAIQAIRLKSSEKSK-----MTRDHN 484
K ++ + L G LK L L+L A + +S K++ + RD
Sbjct: 476 KA--AIQDGLLGMFLKRLSSQLILLQAWTSHLWKMFYDARKPRSQIKNEINIDTLARDEF 533
Query: 485 GFRKLLIVLTKARKIFALHSGDGRVVWSLLLHKSEACDSPTELNLYQWQTPHHHAMDENP 544
+K+++++T + K+F + S G ++W L + + L +T H
Sbjct: 534 NLQKMMVMVTASGKLFGIESSSGTILWKQYL---PSVKPDSSFKLMVQRTTAHFPHPPQC 590
Query: 545 SVLVVGR-CGVSSKAPAILSFVDTYTGK--ELNSFDLVHSAVQVMPLPFTDSTEQRLHLL 601
++LV + G+SS L + GK ++ L +Q + LP D ++ LL
Sbjct: 591 TLLVKDKESGMSS-----LYVFNPIFGKWSQVAPPVLKRPILQSLLLPVMDQDYAKVLLL 645
Query: 602 VDDDRRIHLYPKTSEAISIFQQEFSNIYWYSVEADNGIIKGHAVKSKCAGEVLDDFCFET 661
+DD+ ++ +P T + + +I++Y V+A+ G + G+ ++ T
Sbjct: 646 IDDEYKVTAFPATRNVLRQLHELAPSIFFYLVDAEQGRLCGYRLRKD----------LTT 695
Query: 662 RVLWSIIFPMESEKIIAAVSRKQNEVVHTQAKVTSEQDVMYKYISKNLLFVATVAPKASG 721
+ W + P E +I+ ++ +E VH+Q +V ++ V+YK ++ NLL V T + A
Sbjct: 696 ELSWELTIPPEVRRIVKVKGKRSSEHVHSQGRVMGDRSVLYKSLNPNLLAVVTESTDAHH 755
Query: 722 HIGSADPDEAWLVVYLIDTITGRILHRMTHHGAQGPVHAVLSENWVVYHYFNLRAHRYEM 781
+ ++ ++LID +TGRI+H A+GPVH V SENWVVY Y+N +A R E
Sbjct: 756 -------ERTFIGIFLIDGVTGRIIHSSAQKKAKGPVHIVHSENWVVYQYWNTKARRNEF 808
Query: 782 SVTEIYD 788
+V E+Y+
Sbjct: 809 TVLELYE 815
>sp|Q6NRB9|EMC1_XENLA ER membrane protein complex subunit 1 OS=Xenopus laevis GN=emc1
PE=2 SV=1
Length = 987
Score = 232 bits (591), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 210/828 (25%), Positives = 372/828 (44%), Gaps = 102/828 (12%)
Query: 22 SLYEDQVGLMDWHQQYIGKVKHAVFHTQKTGRKRVVVSTEENVIASLDLRHGEIFWRHVL 81
++YEDQVG DW Q+Y+G++K A + G K+++ T++N+IA+L+ R G++ WRHV
Sbjct: 20 AVYEDQVGKFDWRQEYVGRIKFASLES-GLGAKKLIAVTDKNIIAALNSRTGDLLWRHV- 77
Query: 82 GINDVVDGIDIAL---GKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPT 138
D +G AL G+ IT+S G LR+W G + WE+ L +P
Sbjct: 78 -DKDTSEGTVDALMMIGQDAITVSG-GRLLRSWETNIGALNWEAAL------EPGSFQAV 129
Query: 139 NLKVDKDSL----ILVSSKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVV 194
+ +D+ +L +S L+ +S +G + W+ Q++ ++VV
Sbjct: 130 SFAGSQDTARYVAVLKNSALSLYFLS--NGHLKWSESLPESDTVQYQLLYSPYKGSVHVV 187
Query: 195 GYAGSSQFHAYQINAMNGELLN------------HETAAFSGGFV---GDVALVSSDTLV 239
G S + +G + + H T G V GDV + S +
Sbjct: 188 GLVPHSHLTILTFSLEDGSISHQVRVLTPWLRTLHGTCGVIGEGVLVCGDVPMASVHIVS 247
Query: 240 TLDTTRSILVTVSFKNRKIAFQETHLSNLGEDSSGMVEILPSSLTGMFTVKINNYKLFI- 298
L + +V + ++A T L + +G + SL+ F ++I + +
Sbjct: 248 LLSGEETTRYSVQSLDIELAEDPTQLDVITAPQNG----IGGSLSQFF-LQIAPRRFLLM 302
Query: 299 ----------RLTSEDKLEVVHKVDHETVVSDALVFSEGKEAFAVVEHGGSKVDITVKP- 347
R S+ L +TVV+ +EG + + +P
Sbjct: 303 HYHDGVLTPLRDFSQVSLVNFATTGEKTVVAVMQCKTEGNPKSGAESEYLTGQNCAQEPW 362
Query: 348 ---GQDWNNNLVQE-----------SIEMDHQRGLVHKVFINNYLRTDRSHGFRALIVME 393
G ++ NL S +D ++ +LR D S G+RAL+ E
Sbjct: 363 YCPGHTYSINLYMADSGRRLLETTMSFTLDQICVRPDSFYLQTFLRKDDSVGYRALVQTE 422
Query: 394 DHSLLLVQQ-GKIVWNREDALASIIDVTTSELPVEKEGVSVAKVEHSLFEWLKGHMLK-L 451
D+ LL +QQ GK++W RE++LA ++ + T +LP+ + + L G +LK L
Sbjct: 423 DNQLLFLQQPGKLIWLREESLADVVTMETVDLPLTGAQAELEGEFGKKADGLIGMVLKRL 482
Query: 452 KGTLMLASPEDV----AAIQAIRLKSSEKSK-----MTRDHNGFRKLLIVLTKARKIFAL 502
L+L A + +S +++ + RD +K+++++T + K+F +
Sbjct: 483 SSQLILLQSWSAHLWKMFCDARKPRSQIRNEINVDTLARDDFNLQKMMVMVTASGKLFGI 542
Query: 503 HSGDGRVVWSLLLHKSEACDSPTELNLYQWQTPHHHAMDENPSVLVVGRCGVSSKAPAIL 562
S G ++W LH S L +T H ++LV + V+ K+ A+
Sbjct: 543 ESSSGSILWKFYLHGVHPGSS---FKLLVQRTTAHFPHPPQCTLLVKDK--VTEKS-AMY 596
Query: 563 SFVDTYTGK--ELNSFDLVHSAVQVMPLPFTDSTEQRLHLLVDDDRRIHLYPKTSEAISI 620
F + GK +L L +Q + LP D+ ++ LL+DD ++ +P T +
Sbjct: 597 VFNPIF-GKLSQLAPPPLQRPILQSLLLPIMDNDYAKVLLLLDDQHKVIAFPATKYVLQQ 655
Query: 621 FQQEFSNIYWYSVEADNGIIKGHAVKSKCAGEVLDDFCFETRVLWSIIFPMESEKIIAAV 680
Q+ S I++Y V+ + G + G + + T +W ++ P + ++I
Sbjct: 656 LQELHSTIFFYLVDVEKGKLSGLRLNKDLS----------TEEIWEVLLPADQQRITVVK 705
Query: 681 SRKQNEVVHTQAKVTSEQDVMYKYISKNLLFVATVAPKASGHIGSADPDEAWLVVYLIDT 740
++ NE VH+Q +V ++ V+YKY++ NLL + T + P+ ++ +YLID
Sbjct: 706 GKRSNEHVHSQGRVMGDRSVLYKYLNPNLLVLVTES-------TDTHPERCFIGIYLIDG 758
Query: 741 ITGRILHRMTHHGAQGPVHAVLSENWVVYHYFNLRAHRYEMSVTEIYD 788
+TGRI+H A+GPV + SENWVVY Y+N +A R E++V E+Y+
Sbjct: 759 VTGRIIHSSVQRRARGPVQIIHSENWVVYQYWNSKARRNELTVLELYE 806
>sp|Q8C7X2|EMC1_MOUSE ER membrane protein complex subunit 1 OS=Mus musculus GN=Emc1 PE=1
SV=1
Length = 997
Score = 230 bits (586), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 221/841 (26%), Positives = 383/841 (45%), Gaps = 124/841 (14%)
Query: 24 YEDQVGLMDWHQQYIGKVKHAVFHTQKTGRKRVVVSTEENVIASLDLRHGEIFWRHVLGI 83
YEDQVG DW QQY+GK+K A G K++VV+TE+NVIA+L+ R GEI WRHV
Sbjct: 24 YEDQVGKFDWRQQYVGKIKFASLEFSP-GSKKLVVATEKNVIAALNSRTGEILWRHV-DK 81
Query: 84 NDVVDGIDIAL--GKYVITLSSDGSTLRAWNLPDGQMVWESFL-RGSKHSKPLLLVPTNL 140
+D L G+ IT+S+ G +R+W G + WE L GS + L+ + ++
Sbjct: 82 GTAEGAVDAMLVHGQDAITVSNGGRLMRSWETNIGGLNWEITLDTGSFQALGLVGLQESV 141
Query: 141 KVDKDSLILVSSKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSS 200
+ +L + LH +SS G + W + Q++ S ++ +G S
Sbjct: 142 RYIA---VLKKTTLTLHHLSS--GHLKWVEHLPESDSILYQMVYSYGSGVVWALGIVPFS 196
Query: 201 QFHAYQINAMNGEL----------LNHETAAFSGGFVGDVALVSSDTLVTLDTTRSILVT 250
+ + N +GE+ L H T A G V + LV D + + ++ +
Sbjct: 197 HVNIVKFNVEDGEIVQQVRVWTPWLQHLTGAC--GVVDEAVLVCPDP--SSHSLHTLALE 252
Query: 251 VSFKNRKIAFQETHLSNLGEDSSGM-VEILPSSLTGMFTVKINNYKLFIRLTSE------ 303
++ R+I Q L E SG ++LP+ + V + + F++L+
Sbjct: 253 TEWELRQIPLQSPDL----EFGSGFQPQVLPTQPS---PVAPSRAQFFLQLSPSHYALLH 305
Query: 304 ---DKLEVVHKVDHETVVSDALVFSEGKEAFAVVEHGGSKVDITVKPG------------ 348
+ ++ T+VS A + G++ A V ++V V G
Sbjct: 306 YHHGAVTLLKNFPQATLVSFA---TTGEKTVAAVMTCRTEVQKPVSAGDGSVASFPETSG 362
Query: 349 ---------QDWNNNL-----------VQESIEMDHQRGLVHKVFINNYLRTDRSHGFRA 388
Q + NL S ++ + +++I +L+ D S G+RA
Sbjct: 363 AQDSLACFNQTYTINLYLVETGRRLLDTSISFSLEQKGTRPEQLYIQVFLKKDDSVGYRA 422
Query: 389 LIVMEDHSLLLVQQ--GKIV-WNREDALASIIDVTTSELPV-----EKEGVSVAKVEHSL 440
L+ +DH L +QQ GK+V W+RE++LA ++ + +LP+ E EG K ++
Sbjct: 423 LVQTQDHLQLFLQQLAGKVVLWSREESLAEVVCLEMVDLPLTGAQAELEGEFGKKA--AI 480
Query: 441 FEWLKGHMLK-LKGTLMLASPEDV----AAIQAIRLKSSEKSK-----MTRDHNGFRKLL 490
+ L G LK L L+L A + +S K++ + RD +K++
Sbjct: 481 QDGLLGMFLKRLSSQLILLQAWTSHLWKMFYDARKPRSQIKNEINIDTLARDEFNLQKMM 540
Query: 491 IVLTKARKIFALHSGDGRVVWSLLLHKSEACDSPTELNLYQWQTPHHHAMDENPSVLVVG 550
+ +T + K+F + S G ++W L + S L +T H ++LV
Sbjct: 541 VTVTASGKLFGIESSSGTILWKQYLPNVKPDSS---FKLMVQRTTAHFPHPPQCTLLVKD 597
Query: 551 R-CGVSSKAPAILSFVDTYTGK--ELNSFDLVHSAVQVMPLPFTDSTEQRLHLLVDDDRR 607
+ G+SS L + GK ++ L +Q + LP D ++ LLVDD+ +
Sbjct: 598 KETGMSS-----LFVFNPIFGKWSQVAPPVLKRPILQSLLLPVMDQDYAKVLLLVDDEYK 652
Query: 608 IHLYPKTSEAISIFQQEFSNIYWYSVEADNGIIKGHAVKSKCAGEVLDDFCFETRVLWSI 667
+ +P T + + +I++Y V+A+ G + G+ ++ T + W +
Sbjct: 653 VTAFPATRNVLRQLHELAPSIFFYLVDAEQGRLSGYQLRKDLT----------TELSWEL 702
Query: 668 IFPMESEKIIAAVSRKQNEVVHTQAKVTSEQDVMYKYISKNLLFVATVAPKASGHIGSAD 727
P E ++++ ++ +E VH+Q +V ++ V+YK ++ NLL V T +
Sbjct: 703 TIPPEVQRVVKVKGKRSSEHVHSQGRVMGDRSVLYKSLNPNLLAVVTESTDVHH------ 756
Query: 728 PDEAWLVVYLIDTITGRILHRMTHHGAQGPVHAVLSENWVVYHYFNLRAHRYEMSVTEIY 787
+ ++ ++LID +TGRI+H A+GPVH V SENWVVY Y+N +A R E++ E+Y
Sbjct: 757 -ERTFIGIFLIDGVTGRIIHSSVQKKARGPVHLVHSENWVVYQYWNSKARRNELTALELY 815
Query: 788 D 788
+
Sbjct: 816 E 816
>sp|O13981|EMC1_SCHPO ER membrane protein complex subunit 1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=emc1 PE=3 SV=1
Length = 885
Score = 62.4 bits (150), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 79/158 (50%), Gaps = 32/158 (20%)
Query: 619 SIFQ---QEFSNIYWYSVEADNGIIKGHAVKSKCAGEVLDDFCFETRVLWSIIFPMESEK 675
SIF+ QE ++I+ Y+ E ++G ++ + +V WS E E
Sbjct: 551 SIFEKISQEANSIFVYTSETK---VEGFSISADLTMDVQ----------WSYNL-AEGEI 596
Query: 676 IIAAVSRKQNEVVHTQAKVTSEQDVMYKYISKNLLFVATVAPKASGHIGSADPDEAWLVV 735
+IA++ R +E+V + +V ++VMYKY++ NL + + LVV
Sbjct: 597 VIASIRRNPHEIVASFGRVLQNREVMYKYLNPNLFALFSKCKND-------------LVV 643
Query: 736 YLIDTITGRILHRMTHHGA--QGPVHAVLSENWVVYHY 771
Y++D++TG I+++ H G V+ V SENW+VY Y
Sbjct: 644 YVMDSVTGSIVYQNKHQGIILFDKVYGVFSENWLVYSY 681
>sp|Q9KTW8|BAMB_VIBCH Outer membrane protein assembly factor BamB OS=Vibrio cholerae
serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
GN=bamB PE=3 SV=1
Length = 386
Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 89/215 (41%), Gaps = 30/215 (13%)
Query: 55 RVVVSTEENVIASLDLRHGEIFWR---HVLGINDVVDGIDIALGKYVITLSSDGSTLRAW 111
+V V++ + V+ +LD ++G++ W + G + GI A GK I S+ + A
Sbjct: 69 KVFVASRDGVVKALDPQNGKVIWTTDLEIEGSARLSGGITAAFGKLFI--GSENGVVNAL 126
Query: 112 NLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSSKGCLHAVSSIDGEILWTRD 171
+ G+ +W S + G + P D + +I+ +S+G L A++ DG WT
Sbjct: 127 DAETGEPLWASAIEGEVLAAP--------AADNNIVIVNTSRGALIALNQEDGAQKWTI- 177
Query: 172 FAAESVEVQQVIQLDESDQIYVVG--YAGSSQFHAYQINAMNGELLNHETAAFSGGFVGD 229
S EV + +S V G + G+ A G+L+ + G
Sbjct: 178 ----STEVPNLTLRGDSRPTAVAGGVFWGTPSGRLAAAIAERGQLIWQQPVGQPKG---- 229
Query: 230 VALVSSDTLVTLDTTRSI----LVTVSFKNRKIAF 260
D LV +D + + L TV F + IA
Sbjct: 230 --ATEIDRLVDVDASPLVIGGTLFTVGFNGQLIAI 262
>sp|Q5X521|BAMB_LEGPA Outer membrane protein assembly factor BamB OS=Legionella
pneumophila (strain Paris) GN=bamB PE=3 SV=1
Length = 384
Score = 44.7 bits (104), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 53/243 (21%), Positives = 105/243 (43%), Gaps = 32/243 (13%)
Query: 1 MAIRFIILTLLFLS-SCT-IPSLSLYEDQVGLMDWHQQYIGKVKHAVFHTQKTGRKR--- 55
M IR ++L L L+ CT + L +D ++ KVK A T G+
Sbjct: 1 MKIRILVLILCALTQGCTYVDDYMLGKDNTPQPKELKEIQPKVKMAQSWTTPVGKAHKTN 60
Query: 56 -------------VVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLS 102
+ + ++ +++ + G+I W L N++V G +A G + +
Sbjct: 61 EYLNIKPAIRGDVIYTADASGLVQAVNRKDGQIKWSTALK-NNIVSGPTVAAG--YVAVG 117
Query: 103 SDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSSKGCLHAVSSI 162
++ STL N DG+ +W+ +K S +L P + +I + G ++A+ ++
Sbjct: 118 TNASTLVLLNQSDGKEIWQ-----NKVSAEVLAPPA---ISHQKVIAKTIDGKVYAIDAV 169
Query: 163 DGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAF 222
+G+ LW D A S+ ++ D + +VG++ + A ++ G L+ + A+
Sbjct: 170 NGKQLWVADHGAPSLVLKASSSPIIVDDLVLVGFS-DGKLDALEL--QTGRLIWQRSIAY 226
Query: 223 SGG 225
G
Sbjct: 227 GTG 229
>sp|P25574|EMC1_YEAST ER membrane protein complex subunit 1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=EMC1 PE=1 SV=1
Length = 760
Score = 44.7 bits (104), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 57/122 (46%), Gaps = 15/122 (12%)
Query: 671 MESEKIIAAVSRKQNEVVHTQAKVTSEQDVMYKYISKNLLFVATVAPKASGHIGSADPDE 730
+ S++ + A S+++ ++T ++ V+YKY+ NL A + H
Sbjct: 454 VNSKEKMVAYSKRETTNLNTLGITLGDKSVLYKYLYPNL--AAYLIANEEHHT------- 504
Query: 731 AWLVVYLIDTITGRILHRMTHHGA---QGPVHAVLSENWVVYHYFNLRA-HRYEMSVTEI 786
+ LIDTITG IL H + + P+ V E WVVY YF+ ++ V E+
Sbjct: 505 --ITFNLIDTITGEILITQEHKDSPDFRFPMDIVFGEYWVVYSYFSSEPVPEQKLVVVEL 562
Query: 787 YD 788
Y+
Sbjct: 563 YE 564
>sp|H9L451|BAMB_SALTY Outer membrane protein assembly factor BamB OS=Salmonella
typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
GN=bamB PE=3 SV=1
Length = 392
Score = 39.3 bits (90), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 61/135 (45%), Gaps = 21/135 (15%)
Query: 56 VVVSTEENVIASLDLRHGEIFWRHVLGIND---------VVDGIDIALGKYVITLSSDGS 106
V + V+ +L+ G+ W LG D + G+ +A G + + S+ +
Sbjct: 72 VYAADRAGVVKALNADDGKEIWSVNLGEKDGWFSRSSALLSGGVTVAGGH--VYIGSEKA 129
Query: 107 TLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILV-SSKGCLHAVSSIDGE 165
+ A N DG W++ + G S+P++ D ++L+ +S G L A++ DG
Sbjct: 130 EVYALNTSDGTTAWQTKVAGEALSRPVV---------SDGIVLIHTSNGQLQALNQADGA 180
Query: 166 ILWTRDFAAESVEVQ 180
I WT + S+ ++
Sbjct: 181 IKWTVNLDMPSLSLR 195
Score = 33.1 bits (74), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 52/109 (47%), Gaps = 24/109 (22%)
Query: 65 IASLDLRHGEIFWRHVLG-IND-VVDGIDIAL---GKYVITLSSDGSTLRAWNLPDGQMV 119
+ +LDLR G+I W+ LG +ND +VDG I L V+ L++DG G +
Sbjct: 267 LTALDLRSGQIMWKRELGSVNDFIVDGDRIYLVDQNDRVLALTTDG----------GVTL 316
Query: 120 W-ESFLRGSKHSKPLLLVPTNLKVDKDSLILVSSKGCLHAVSSIDGEIL 167
W +S L + P+L L++ S+G LH ++ DG +
Sbjct: 317 WTQSDLLHRLLTSPVLY--------NGDLVVGDSEGYLHWINVDDGRFV 357
>sp|P77931|PVADH_PSESP Polyvinylalcohol dehydrogenase OS=Pseudomonas sp. GN=pvaA PE=1 SV=1
Length = 639
Score = 39.3 bits (90), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 47/206 (22%), Positives = 79/206 (38%), Gaps = 43/206 (20%)
Query: 45 VFHTQKTGRKRVVVSTEENVIASLDLRH-GEIFW-RHV---------------------L 81
+ HT + GR+ +VV + + ++D + GE+ W R V +
Sbjct: 434 ILHTLQDGRQYIVVGQKSGAVYAMDPDNDGELIWMRRVSPGSELGGVEFGMAADAENVYV 493
Query: 82 GINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLK 141
GI+DV+ G Y + + DG+ + A+ P W + S+ + +P
Sbjct: 494 GISDVITRKGGKPGVYALRI-RDGADVWAFPAPRTPCRWNNIFCHPAVSQAVTAMP---- 548
Query: 142 VDKDSLILVSSKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLD-----------ESDQ 190
+ S G A S+ DG++LW + AA + Q D
Sbjct: 549 ---GVVFAGSMDGHFRAFSTSDGKVLWEFNTAAAPYKTVAGKQADGGVMDGAGPTIAGGM 605
Query: 191 IYV-VGYAGSSQFHAYQINAMNGELL 215
+YV GYAG S +A + G +L
Sbjct: 606 VYVHSGYAGRSTQNAGDLRGREGNVL 631
>sp|Q8P980|BAMB_XANCP Outer membrane protein assembly factor BamB OS=Xanthomonas
campestris pv. campestris (strain ATCC 33913 / NCPPB 528
/ LMG 568) GN=bamB PE=3 SV=1
Length = 406
Score = 38.9 bits (89), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 61/145 (42%), Gaps = 5/145 (3%)
Query: 32 DWHQQYIGKVKHAVFHTQKTGRKRVVVSTEENVIASLDLRHGEIFWRHVL-GINDVVDG- 89
D +++ KV + V + V+V + + +++ D GE W H G V G
Sbjct: 150 DGTEKWRAKVPNEVIAAPAIAQSLVLVRSNDGRVSAFDAATGERRWFHAEEGPTLSVRGN 209
Query: 90 IDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFL---RGSKHSKPLLLVPTNLKVDKDS 146
I G V+ + +D TL A L DG+ +WE + G + + V +D +
Sbjct: 210 APIVTGPGVVFVGNDVGTLSALALQDGRPLWEQAIGVPEGRTELERMSDVDGAPVLDGTT 269
Query: 147 LILVSSKGCLHAVSSIDGEILWTRD 171
L S K A+ G LWTRD
Sbjct: 270 LYATSFKNETLALEGPSGRPLWTRD 294
>sp|Q5NIB1|BAMB_FRATT Outer membrane protein assembly factor BamB OS=Francisella
tularensis subsp. tularensis (strain SCHU S4 / Schu 4)
GN=bamB PE=3 SV=1
Length = 456
Score = 38.9 bits (89), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 54/113 (47%), Gaps = 14/113 (12%)
Query: 56 VVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPD 115
++ + + I +LD G++ W I + ++A+ VI + D S L+A+N+
Sbjct: 246 LIFAAYQGAIVALDKDSGKMLWAKKASIIN-----NMAINNGVIFTTQDDSELKAYNIQT 300
Query: 116 GQMVW-ESFLRGSKHSKPLLLVPTNLKVDKDSLILVSSKGCLHAVSSIDGEIL 167
G VW + L+ K + P+ K +++ +G LH +S++GE L
Sbjct: 301 GDTVWTQDTLKWRKITAPIYY--------KGLIVVADYQGYLHFFNSLNGEYL 345
Score = 33.5 bits (75), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 49/114 (42%), Gaps = 11/114 (9%)
Query: 56 VVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPD 115
V V + + +L + +G+I W++ G N V IA + S TL A + D
Sbjct: 70 VFVPNQNGMAYALAITNGKIIWKNDTGTNLSVQPNTIA---NAVIFGSIKGTLTAIDDKD 126
Query: 116 GQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSSKGCLHAVSSIDGEILWT 169
GQ +W + S S+P + +S+ L + G + A + +G W+
Sbjct: 127 GQTLWRTDAPSSIFSQPTIY--------DNSIYLQTHDGSVSAFDARNGSKEWS 172
>sp|Q7CJM5|BAMB_YERPE Outer membrane protein assembly factor BamB OS=Yersinia pestis
GN=bamB PE=3 SV=1
Length = 393
Score = 38.1 bits (87), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 40/75 (53%), Gaps = 10/75 (13%)
Query: 99 ITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILV-SSKGCLH 157
+ + S+ + + A N DGQ+ W++ + G S+P++ D ++L+ +S G L
Sbjct: 123 VYVGSEKAVVYALNAYDGQVAWQTVVAGEALSRPVV---------SDGVVLIHTSNGMLQ 173
Query: 158 AVSSIDGEILWTRDF 172
A++ DG I WT +
Sbjct: 174 ALNESDGAIKWTLNL 188
>sp|Q32D50|BAMB_SHIDS Outer membrane protein assembly factor BamB OS=Shigella dysenteriae
serotype 1 (strain Sd197) GN=bamB PE=3 SV=1
Length = 392
Score = 36.6 bits (83), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 43/83 (51%), Gaps = 10/83 (12%)
Query: 99 ITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILV-SSKGCLH 157
+ + S+ + + A N DG + W++ + G S+P++ D L+L+ +S G L
Sbjct: 122 VYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVV---------SDGLVLIHTSNGQLQ 172
Query: 158 AVSSIDGEILWTRDFAAESVEVQ 180
A++ DG + WT + S+ ++
Sbjct: 173 ALNEADGAVKWTVNLDMPSLSLR 195
>sp|C6BGE7|BAMB_RALP1 Outer membrane protein assembly factor BamB OS=Ralstonia pickettii
(strain 12D) GN=bamB PE=3 SV=1
Length = 392
Score = 36.6 bits (83), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 74/196 (37%), Gaps = 21/196 (10%)
Query: 26 DQVGLMDWHQQYIGKVKHAVFHTQKTGRKRVVVSTEENVIASLDLRHGEIFW---RHVLG 82
D+ G W G+V A G+ V+V T + + LD +GE W R
Sbjct: 135 DEKGAQKWKVAVNGEVLTAPL----VGQGLVIVRTTDGRVLGLDPSNGERKWIYQRSPSA 190
Query: 83 INDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWE---SFLRGSKHSKPLLLVPTN 139
+N + + + I L G L A + +G + WE S+ RG + L V
Sbjct: 191 LN-LRSSLPMIFAGDNIILGFAGGKLGALSASNGALRWEAAVSYPRGVSEIERLNDVTGA 249
Query: 140 LKVDKDSLILVSSKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGS 199
V+ + S +G + G W RDF++ + Q L +D+ VV
Sbjct: 250 PSVNGSQVCAASFQGRVACFDMSTGAPRWGRDFSSPTGVTQDDGGLFAADEKSVV----- 304
Query: 200 SQFHAYQINAMNGELL 215
Y NA NG L
Sbjct: 305 -----YGFNAQNGADL 315
>sp|P77774|BAMB_ECOLI Outer membrane protein assembly factor BamB OS=Escherichia coli
(strain K12) GN=bamB PE=1 SV=1
Length = 392
Score = 36.6 bits (83), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 43/83 (51%), Gaps = 10/83 (12%)
Query: 99 ITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILV-SSKGCLH 157
+ + S+ + + A N DG + W++ + G S+P++ D L+L+ +S G L
Sbjct: 122 VYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVV---------SDGLVLIHTSNGQLQ 172
Query: 158 AVSSIDGEILWTRDFAAESVEVQ 180
A++ DG + WT + S+ ++
Sbjct: 173 ALNEADGAVKWTVNLDMPSLSLR 195
>sp|F7XXL0|BAMB_MOREP Outer membrane protein assembly factor BamB OS=Moranella endobia
(strain PCIT) GN=bamB PE=3 SV=1
Length = 388
Score = 36.6 bits (83), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 60/136 (44%), Gaps = 20/136 (14%)
Query: 55 RVVVSTEENVIASLDLRHGEIFWRHVLGI---------NDVVDGIDIALGKYVITLSSDG 105
RV V+ ++ +LD G+ W L I + G A+G I ++S+
Sbjct: 67 RVFVANRYGLVKALDADSGKELWAKDLSIYTGCFSRNRPAQLSGGVTAVGNR-IYVASEL 125
Query: 106 STLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILV-SSKGCLHAVSSIDG 164
+ + A G + WE + G S P++ D +IL+ +S G L A++ DG
Sbjct: 126 AKVYAMEAKCGSLAWEVLVAGETLSPPVV---------SDGVILIHTSNGMLQALNEADG 176
Query: 165 EILWTRDFAAESVEVQ 180
+ WT + A+ + ++
Sbjct: 177 ALKWTVNLEAKMLNIR 192
>sp|Q2SRX4|TIG_MYCCT Trigger factor OS=Mycoplasma capricolum subsp. capricolum (strain
California kid / ATCC 27343 / NCTC 10154) GN=tig PE=3
SV=1
Length = 428
Score = 35.8 bits (81), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 27/48 (56%)
Query: 614 TSEAISIFQQEFSNIYWYSVEADNGIIKGHAVKSKCAGEVLDDFCFET 661
+ EAI+ +EF+N+Y VE +I A+K + E+L+ F FE
Sbjct: 378 SEEAINTKFEEFANLYGIEVEKIKSLIDNQAIKHQVESELLETFIFEN 425
>sp|Q5XGE2|UTP15_XENTR U3 small nucleolar RNA-associated protein 15 homolog OS=Xenopus
tropicalis GN=utp15 PE=2 SV=1
Length = 515
Score = 33.9 bits (76), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 54 KRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNL 113
K + E++V+ D+ G+ R G + V +D KY I SD T R W++
Sbjct: 93 KLLAAGCEDSVVQLFDIS-GKAALRQFSGHSKAVHFVDFTADKYRIVSGSDDYTSRLWDI 151
Query: 114 PDG 116
P+G
Sbjct: 152 PNG 154
>sp|Q54RC7|ISC2B_DICDI Isochorismatase family protein 2B OS=Dictyostelium discoideum
GN=DDB_G0283199 PE=3 SV=1
Length = 214
Score = 33.1 bits (74), Expect = 8.9, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 376 NYLRTDRSHGFRALIVMEDHSLLLVQQGKIVWNREDALASI--IDVTTSELPVEKEGVSV 433
NYLRT GF + + +L L+++G V DA ASI ++ T S +++ GV +
Sbjct: 103 NYLRTVILAGFETHVCIIQTALDLIREGYTVHVITDATASIDSLEYTASLKRLKQSGVYL 162
Query: 434 AKVEHSLFEWLK 445
E LF+ L+
Sbjct: 163 TTTEAVLFQLLR 174
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.134 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 284,403,432
Number of Sequences: 539616
Number of extensions: 11776582
Number of successful extensions: 29344
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 29231
Number of HSP's gapped (non-prelim): 86
length of query: 794
length of database: 191,569,459
effective HSP length: 126
effective length of query: 668
effective length of database: 123,577,843
effective search space: 82549999124
effective search space used: 82549999124
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 65 (29.6 bits)