Query 003800
Match_columns 794
No_of_seqs 292 out of 1142
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 04:27:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003800.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003800hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3q7m_A Lipoprotein YFGL, BAMB; 99.8 3.4E-16 1.2E-20 171.8 33.5 216 25-258 24-261 (376)
2 3q7m_A Lipoprotein YFGL, BAMB; 99.7 1.8E-15 6E-20 166.1 24.2 218 24-258 68-299 (376)
3 1flg_A Protein (quinoprotein e 99.6 7E-14 2.4E-18 163.8 25.1 227 28-265 43-364 (582)
4 1kb0_A Quinohemoprotein alcoho 99.6 3.6E-14 1.2E-18 169.2 22.0 225 28-264 54-354 (677)
5 2ad6_A Methanol dehydrogenase 99.6 6.7E-14 2.3E-18 163.6 23.6 226 29-265 40-344 (571)
6 1w6s_A Methanol dehydrogenase 99.6 7.1E-14 2.4E-18 163.9 22.8 219 28-258 39-345 (599)
7 1yiq_A Quinohemoprotein alcoho 99.6 1.1E-13 3.7E-18 165.4 22.8 219 29-258 48-341 (689)
8 1kv9_A Type II quinohemoprotei 99.6 1.5E-13 5.2E-18 163.6 22.9 220 28-258 43-336 (668)
9 2hz6_A Endoplasmic reticulum t 99.5 1.6E-14 5.4E-19 159.6 8.0 184 49-257 5-194 (369)
10 1w6s_A Methanol dehydrogenase 99.5 4.1E-12 1.4E-16 149.0 27.1 100 27-127 82-203 (599)
11 2ad6_A Methanol dehydrogenase 99.5 1.2E-11 4.3E-16 144.4 29.1 190 27-220 82-344 (571)
12 1flg_A Protein (quinoprotein e 99.5 1.6E-11 5.5E-16 143.7 29.8 191 25-220 84-364 (582)
13 1kb0_A Quinohemoprotein alcoho 99.5 1E-11 3.5E-16 148.1 28.2 102 25-127 93-211 (677)
14 3no2_A Uncharacterized protein 99.4 1.2E-11 4.1E-16 131.0 23.1 181 22-219 18-203 (276)
15 1kv9_A Type II quinohemoprotei 99.4 2.7E-11 9.2E-16 144.2 28.0 188 25-217 82-339 (668)
16 3no2_A Uncharacterized protein 99.4 2.6E-11 9E-16 128.4 22.7 192 53-264 5-203 (276)
17 2hz6_A Endoplasmic reticulum t 99.3 3.9E-13 1.4E-17 148.3 4.7 173 24-222 24-203 (369)
18 1yiq_A Quinohemoprotein alcoho 99.3 3.2E-11 1.1E-15 144.0 21.0 191 25-220 86-347 (689)
19 2be1_A Serine/threonine-protei 99.3 1.2E-11 4.2E-16 134.4 15.6 196 53-257 10-233 (339)
20 3vgz_A Uncharacterized protein 99.2 3.4E-08 1.2E-12 105.4 33.3 223 31-265 33-271 (353)
21 2be1_A Serine/threonine-protei 99.1 3.4E-10 1.2E-14 123.1 11.1 190 26-222 27-243 (339)
22 3hxj_A Pyrrolo-quinoline quino 99.0 8.3E-09 2.8E-13 109.6 20.3 202 26-257 84-285 (330)
23 3hxj_A Pyrrolo-quinoline quino 99.0 2.7E-08 9.4E-13 105.5 21.7 168 25-220 123-292 (330)
24 3vgz_A Uncharacterized protein 98.9 1.1E-06 3.9E-11 93.4 31.3 192 52-257 99-305 (353)
25 3dsm_A Uncharacterized protein 98.7 2.1E-06 7E-11 92.5 25.6 172 22-215 67-257 (328)
26 3dsm_A Uncharacterized protein 98.6 6.2E-06 2.1E-10 88.7 24.8 189 53-257 53-255 (328)
27 1l0q_A Surface layer protein; 98.5 0.0002 6.7E-09 77.4 34.9 183 56-257 5-191 (391)
28 1l0q_A Surface layer protein; 98.5 0.00012 4.1E-09 79.2 33.0 214 22-257 15-235 (391)
29 1nir_A Nitrite reductase; hemo 98.5 0.00034 1.2E-08 80.8 37.0 191 53-257 148-357 (543)
30 3bws_A Protein LP49; two-domai 98.5 0.00036 1.2E-08 76.4 34.4 182 64-257 102-294 (433)
31 2ovr_B FBW7, F-BOX/WD repeat p 98.4 0.0015 5E-08 72.3 36.6 182 52-257 128-310 (445)
32 1pby_B Quinohemoprotein amine 98.4 0.00015 5.1E-09 76.0 26.9 139 22-172 14-172 (337)
33 2iwa_A Glutamine cyclotransfer 98.3 0.00019 6.6E-09 75.2 25.6 187 53-256 31-238 (266)
34 1pby_B Quinohemoprotein amine 98.2 0.00081 2.8E-08 70.3 28.8 150 55-219 3-171 (337)
35 3bws_A Protein LP49; two-domai 98.2 0.0022 7.5E-08 70.1 33.1 192 53-257 133-336 (433)
36 1nir_A Nitrite reductase; hemo 98.2 0.0019 6.3E-08 74.6 32.8 198 50-255 187-402 (543)
37 1r5m_A SIR4-interacting protei 98.2 0.0025 8.6E-08 68.7 32.0 190 52-257 56-280 (425)
38 1qks_A Cytochrome CD1 nitrite 98.2 0.0019 6.4E-08 75.0 32.6 202 53-265 166-382 (567)
39 3ow8_A WD repeat-containing pr 98.1 0.0075 2.6E-07 64.0 34.3 189 53-257 48-239 (321)
40 3v7d_B Cell division control p 98.1 0.0072 2.5E-07 66.8 34.4 189 52-257 131-343 (464)
41 2ovr_B FBW7, F-BOX/WD repeat p 98.1 0.0044 1.5E-07 68.5 31.9 182 53-257 209-393 (445)
42 1gxr_A ESG1, transducin-like e 98.1 0.0024 8.2E-08 66.5 28.2 188 52-257 108-298 (337)
43 3nol_A Glutamine cyclotransfer 98.0 0.00075 2.6E-08 70.3 22.7 153 53-221 52-211 (262)
44 1jmx_B Amine dehydrogenase; ox 98.0 0.001 3.5E-08 70.0 24.3 138 23-173 25-185 (349)
45 3u4y_A Uncharacterized protein 98.0 0.021 7.2E-07 59.7 34.5 192 53-257 9-209 (331)
46 1qks_A Cytochrome CD1 nitrite 98.0 0.014 4.7E-07 67.8 35.4 221 22-255 180-421 (567)
47 3mbr_X Glutamine cyclotransfer 98.0 0.002 7E-08 66.3 24.9 153 53-221 30-189 (243)
48 3vl1_A 26S proteasome regulato 98.0 0.006 2.1E-07 66.2 30.2 189 53-257 68-280 (420)
49 3nok_A Glutaminyl cyclase; bet 98.0 0.00039 1.3E-08 72.5 19.3 153 52-221 63-220 (268)
50 4aez_A CDC20, WD repeat-contai 97.9 0.012 4.2E-07 64.0 32.4 188 53-257 103-295 (401)
51 3u4y_A Uncharacterized protein 97.9 0.01 3.5E-07 62.2 30.5 217 22-257 23-254 (331)
52 3zwl_B Eukaryotic translation 97.9 0.033 1.1E-06 58.4 33.4 190 52-257 43-251 (369)
53 3ow8_A WD repeat-containing pr 97.9 0.0095 3.3E-07 63.2 29.2 189 52-257 91-281 (321)
54 4ery_A WD repeat-containing pr 97.8 0.04 1.4E-06 57.2 34.7 190 52-257 34-225 (312)
55 1p22_A F-BOX/WD-repeat protein 97.8 0.0059 2E-07 67.4 28.1 184 52-257 142-327 (435)
56 3sjl_D Methylamine dehydrogena 97.8 0.029 1E-06 61.7 32.9 193 49-257 40-258 (386)
57 3v7d_B Cell division control p 97.8 0.02 6.8E-07 63.2 32.2 185 52-257 216-423 (464)
58 1gxr_A ESG1, transducin-like e 97.8 0.0042 1.4E-07 64.7 24.9 182 52-253 152-335 (337)
59 3mkq_A Coatomer beta'-subunit; 97.8 0.018 6.1E-07 68.5 33.2 192 52-257 24-219 (814)
60 3c75_H MADH, methylamine dehyd 97.8 0.032 1.1E-06 62.3 33.0 192 49-257 80-297 (426)
61 2ynn_A Coatomer subunit beta'; 97.8 0.02 6.9E-07 59.8 29.7 191 52-257 24-219 (304)
62 4gqb_B Methylosome protein 50; 97.8 0.00082 2.8E-08 72.6 18.8 192 53-257 93-291 (344)
63 1q7f_A NHL, brain tumor CG1071 97.8 0.018 6.2E-07 59.1 28.4 151 53-218 40-200 (286)
64 2aq5_A Coronin-1A; WD40 repeat 97.7 0.0044 1.5E-07 67.4 24.3 196 52-257 93-301 (402)
65 1r5m_A SIR4-interacting protei 97.7 0.0078 2.7E-07 64.7 25.9 193 52-257 119-321 (425)
66 3hfq_A Uncharacterized protein 97.7 0.07 2.4E-06 56.3 34.4 193 55-257 4-222 (347)
67 4ery_A WD repeat-containing pr 97.7 0.008 2.7E-07 62.7 25.2 191 52-257 76-270 (312)
68 1sq9_A Antiviral protein SKI8; 97.7 0.0032 1.1E-07 67.7 22.4 154 52-219 136-330 (397)
69 3zwl_B Eukaryotic translation 97.7 0.029 1E-06 58.8 29.3 157 52-219 85-257 (369)
70 3vl1_A 26S proteasome regulato 97.7 0.0058 2E-07 66.3 24.2 193 52-257 108-324 (420)
71 3fvz_A Peptidyl-glycine alpha- 97.6 0.061 2.1E-06 57.0 31.1 150 64-219 70-235 (329)
72 4aez_A CDC20, WD repeat-contai 97.6 0.024 8.3E-07 61.6 28.6 191 53-257 186-382 (401)
73 1q7f_A NHL, brain tumor CG1071 97.6 0.034 1.2E-06 57.0 28.0 154 52-219 87-245 (286)
74 3sfz_A APAF-1, apoptotic pepti 97.6 0.059 2E-06 67.6 35.0 156 51-219 625-782 (1249)
75 1pgu_A Actin interacting prote 97.6 0.11 3.7E-06 59.0 34.3 115 53-172 219-337 (615)
76 2iwa_A Glutamine cyclotransfer 97.6 0.0045 1.5E-07 64.7 20.5 154 95-266 30-191 (266)
77 1jmx_B Amine dehydrogenase; ox 97.5 0.0061 2.1E-07 64.0 21.3 151 53-219 10-183 (349)
78 2mad_H Methylamine dehydrogena 97.5 0.078 2.7E-06 57.8 30.8 148 50-214 74-246 (373)
79 1vyh_C Platelet-activating fac 97.5 0.1 3.4E-06 57.1 31.9 151 52-217 119-271 (410)
80 4a11_B DNA excision repair pro 97.5 0.033 1.1E-06 59.4 27.1 194 52-257 55-278 (408)
81 1erj_A Transcriptional repress 97.5 0.13 4.6E-06 55.7 31.9 190 53-257 76-289 (393)
82 3sjl_D Methylamine dehydrogena 97.5 0.022 7.5E-07 62.7 25.0 200 50-265 86-329 (386)
83 3c75_H MADH, methylamine dehyd 97.5 0.03 1E-06 62.5 26.4 231 23-263 103-409 (426)
84 3i2n_A WD repeat-containing pr 97.4 0.06 2E-06 56.3 27.5 196 53-257 30-245 (357)
85 1got_B GT-beta; complex (GTP-b 97.4 0.17 5.8E-06 53.5 33.8 188 52-257 66-259 (340)
86 3mbr_X Glutamine cyclotransfer 97.4 0.017 5.9E-07 59.4 21.8 155 96-269 30-192 (243)
87 1p22_A F-BOX/WD-repeat protein 97.4 0.03 1E-06 61.5 25.6 185 52-257 182-367 (435)
88 1got_B GT-beta; complex (GTP-b 97.4 0.064 2.2E-06 56.9 27.1 189 52-257 108-303 (340)
89 1sq9_A Antiviral protein SKI8; 97.4 0.045 1.5E-06 58.6 25.9 197 54-264 82-330 (397)
90 3nok_A Glutaminyl cyclase; bet 97.4 0.0069 2.4E-07 63.1 18.3 153 96-268 64-222 (268)
91 3k26_A Polycomb protein EED; W 97.4 0.066 2.3E-06 56.1 26.5 154 53-216 34-197 (366)
92 3nol_A Glutamine cyclotransfer 97.3 0.0076 2.6E-07 62.7 18.3 154 96-269 52-214 (262)
93 2mad_H Methylamine dehydrogena 97.3 0.28 9.7E-06 53.3 36.6 185 51-257 30-245 (373)
94 3mkq_A Coatomer beta'-subunit; 97.3 0.19 6.6E-06 59.5 32.8 148 95-257 24-174 (814)
95 3sfz_A APAF-1, apoptotic pepti 97.3 0.092 3.2E-06 65.8 31.3 155 95-265 626-783 (1249)
96 4g56_B MGC81050 protein; prote 97.3 0.0056 1.9E-07 66.0 17.3 193 53-257 105-303 (357)
97 3odt_A Protein DOA1; ubiquitin 97.3 0.041 1.4E-06 56.4 23.3 183 52-257 113-298 (313)
98 3odt_A Protein DOA1; ubiquitin 97.3 0.012 4.1E-07 60.5 19.1 150 52-219 154-304 (313)
99 3hx6_A Type 4 fimbrial biogene 97.3 0.0095 3.3E-07 68.0 19.3 155 53-215 85-288 (570)
100 3i2n_A WD repeat-containing pr 97.2 0.078 2.7E-06 55.4 24.9 195 53-257 80-293 (357)
101 2z2n_A Virginiamycin B lyase; 97.2 0.2 6.9E-06 50.9 27.2 183 53-257 25-214 (299)
102 1ri6_A Putative isomerase YBHE 97.2 0.29 1E-05 50.6 34.4 188 53-254 4-208 (343)
103 2pbi_B Guanine nucleotide-bind 97.2 0.15 5.1E-06 54.6 27.1 191 52-257 75-317 (354)
104 2aq5_A Coronin-1A; WD40 repeat 97.1 0.065 2.2E-06 58.0 23.8 187 59-257 53-256 (402)
105 2qc5_A Streptogramin B lactona 97.1 0.3 1E-05 49.6 27.8 183 53-257 30-219 (300)
106 2ynn_A Coatomer subunit beta'; 97.1 0.35 1.2E-05 50.2 30.9 148 95-257 24-174 (304)
107 2oiz_A Aromatic amine dehydrog 97.1 0.39 1.3E-05 51.7 29.6 112 52-169 14-146 (361)
108 3hfq_A Uncharacterized protein 97.0 0.42 1.4E-05 50.2 32.0 196 53-254 50-270 (347)
109 2z2n_A Virginiamycin B lyase; 97.0 0.099 3.4E-06 53.2 23.0 182 53-257 109-297 (299)
110 2pbi_B Guanine nucleotide-bind 97.0 0.05 1.7E-06 58.3 21.5 155 52-218 165-322 (354)
111 3mmy_A MRNA export factor; mRN 97.0 0.044 1.5E-06 57.4 20.7 187 52-257 97-306 (368)
112 3gre_A Serine/threonine-protei 97.0 0.55 1.9E-05 51.0 31.4 199 52-257 75-294 (437)
113 3gre_A Serine/threonine-protei 97.0 0.049 1.7E-06 59.5 21.4 157 52-218 181-366 (437)
114 3jrp_A Fusion protein of prote 97.0 0.19 6.4E-06 52.9 25.3 192 52-257 22-242 (379)
115 4aow_A Guanine nucleotide-bind 97.0 0.069 2.4E-06 55.5 21.5 189 52-257 139-339 (340)
116 4a11_B DNA excision repair pro 97.0 0.12 4E-06 55.1 23.8 190 53-257 112-325 (408)
117 1k8k_C P40, ARP2/3 complex 41 97.0 0.15 5.1E-06 53.6 24.3 190 52-255 63-274 (372)
118 3k26_A Polycomb protein EED; W 96.9 0.057 2E-06 56.6 20.6 106 54-167 86-196 (366)
119 2oiz_A Aromatic amine dehydrog 96.9 0.18 6.2E-06 54.3 25.1 72 50-121 58-146 (361)
120 4g56_B MGC81050 protein; prote 96.9 0.028 9.5E-07 60.5 18.2 194 52-257 53-260 (357)
121 1k8k_C P40, ARP2/3 complex 41 96.8 0.3 1E-05 51.3 25.3 193 52-257 19-235 (372)
122 3lrv_A PRE-mRNA-splicing facto 96.8 0.62 2.1E-05 49.0 27.8 190 53-256 94-293 (343)
123 4gqb_B Methylosome protein 50; 96.8 0.039 1.3E-06 59.3 18.4 153 51-215 137-293 (344)
124 3mmy_A MRNA export factor; mRN 96.8 0.094 3.2E-06 54.8 21.0 185 54-256 55-248 (368)
125 1vyh_C Platelet-activating fac 96.8 0.19 6.5E-06 54.9 24.2 189 52-257 161-371 (410)
126 2qc5_A Streptogramin B lactona 96.8 0.19 6.4E-06 51.2 22.7 183 53-257 72-261 (300)
127 3frx_A Guanine nucleotide-bind 96.8 0.61 2.1E-05 48.7 27.2 192 51-257 75-269 (319)
128 1rwi_B Serine/threonine-protei 96.8 0.093 3.2E-06 53.0 19.9 147 53-215 34-184 (270)
129 2vdu_B TRNA (guanine-N(7)-)-me 96.8 0.31 1.1E-05 53.6 25.8 156 95-265 113-280 (450)
130 3lrv_A PRE-mRNA-splicing facto 96.7 0.12 4.2E-06 54.6 21.1 157 52-218 138-299 (343)
131 1erj_A Transcriptional repress 96.7 0.15 5.2E-06 55.2 22.1 193 52-257 134-343 (393)
132 4gga_A P55CDC, cell division c 96.6 1.1 3.6E-05 48.8 32.1 146 56-216 118-266 (420)
133 4aow_A Guanine nucleotide-bind 96.6 0.069 2.4E-06 55.5 18.3 147 54-214 186-340 (340)
134 1pgu_A Actin interacting prote 96.6 0.099 3.4E-06 59.3 20.9 187 52-257 127-330 (615)
135 2vdu_B TRNA (guanine-N(7)-)-me 96.6 0.15 5.2E-06 56.2 21.8 155 52-220 113-280 (450)
136 4ggc_A P55CDC, cell division c 96.6 0.79 2.7E-05 46.7 31.5 145 96-257 36-183 (318)
137 3ei3_B DNA damage-binding prot 96.6 0.3 1E-05 52.0 23.2 187 54-257 87-284 (383)
138 4asc_A Kelch repeat and BTB do 96.6 0.46 1.6E-05 49.7 24.2 201 22-240 16-249 (315)
139 4h5i_A Guanine nucleotide-exch 96.5 0.52 1.8E-05 50.5 24.9 152 95-257 145-302 (365)
140 1pjx_A Dfpase, DIISOPROPYLFLUO 96.5 0.22 7.5E-06 51.3 21.0 148 53-214 28-211 (314)
141 3fvz_A Peptidyl-glycine alpha- 96.4 1.2 4E-05 46.9 27.2 162 53-218 101-284 (329)
142 1yfq_A Cell cycle arrest prote 96.4 0.089 3E-06 54.8 17.6 186 52-257 67-284 (342)
143 2pm9_A Protein WEB1, protein t 96.3 0.07 2.4E-06 57.3 16.3 199 52-257 78-296 (416)
144 3iz6_a 40S ribosomal protein R 96.3 0.27 9.2E-06 52.9 20.8 190 53-256 170-376 (380)
145 3jrp_A Fusion protein of prote 96.2 0.51 1.7E-05 49.4 22.4 199 53-257 69-289 (379)
146 1ri6_A Putative isomerase YBHE 96.2 1.3 4.6E-05 45.4 35.0 191 52-254 48-261 (343)
147 2hqs_A Protein TOLB; TOLB, PAL 96.2 0.37 1.3E-05 52.8 21.9 189 51-257 188-389 (415)
148 1rwi_B Serine/threonine-protei 96.2 0.16 5.4E-06 51.2 17.3 145 53-213 77-224 (270)
149 3hx6_A Type 4 fimbrial biogene 96.2 0.11 3.8E-06 59.3 17.4 155 96-257 85-286 (570)
150 1yfq_A Cell cycle arrest prote 96.2 0.45 1.5E-05 49.3 21.2 183 52-256 22-226 (342)
151 3vu4_A KMHSV2; beta-propeller 96.1 0.42 1.4E-05 51.0 21.1 72 52-127 30-102 (355)
152 3e5z_A Putative gluconolactona 96.0 1.1 3.7E-05 46.0 23.2 143 56-214 43-206 (296)
153 1nr0_A Actin interacting prote 96.0 3.1 0.00011 47.8 37.6 110 52-167 201-317 (611)
154 3ei3_B DNA damage-binding prot 95.9 2.2 7.6E-05 45.1 28.7 151 53-219 131-290 (383)
155 3g4e_A Regucalcin; six bladed 95.8 1.2 4.3E-05 45.9 22.8 148 53-216 24-187 (297)
156 3dm0_A Maltose-binding peripla 95.8 1.8 6E-05 50.6 26.6 192 51-257 440-634 (694)
157 2fp8_A Strictosidine synthase; 95.8 0.95 3.3E-05 47.3 21.8 184 53-255 91-313 (322)
158 2pm9_A Protein WEB1, protein t 95.8 0.15 5.1E-06 54.7 15.7 194 53-257 126-339 (416)
159 3dw8_B Serine/threonine-protei 95.7 0.65 2.2E-05 50.2 20.9 68 52-119 39-130 (447)
160 1jof_A Carboxy-CIS,CIS-muconat 95.7 1.6 5.6E-05 46.3 23.8 157 51-215 49-230 (365)
161 4asc_A Kelch repeat and BTB do 95.7 0.69 2.3E-05 48.3 20.3 186 55-257 6-223 (315)
162 3f3f_A Nucleoporin SEH1; struc 95.7 0.7 2.4E-05 47.3 20.0 71 53-123 71-151 (351)
163 2ecf_A Dipeptidyl peptidase IV 95.7 4.2 0.00014 47.4 29.1 109 51-168 46-186 (741)
164 2p4o_A Hypothetical protein; p 95.6 1.7 5.7E-05 45.3 23.0 146 53-214 42-202 (306)
165 2vpj_A Kelch-like protein 12; 95.6 1.9 6.6E-05 44.3 23.3 191 53-257 14-233 (301)
166 4gga_A P55CDC, cell division c 95.6 3.2 0.00011 44.9 27.6 191 52-257 158-355 (420)
167 3dm0_A Maltose-binding peripla 95.6 1.8 6E-05 50.6 25.3 190 53-257 395-594 (694)
168 3f3f_A Nucleoporin SEH1; struc 95.5 2.5 8.5E-05 43.0 27.2 110 52-167 22-147 (351)
169 3frx_A Guanine nucleotide-bind 95.5 2.3 7.8E-05 44.2 23.3 186 52-256 118-318 (319)
170 2woz_A Kelch repeat and BTB do 95.4 3 0.0001 43.4 24.9 193 52-263 55-293 (318)
171 4h5i_A Guanine nucleotide-exch 95.4 1.1 3.9E-05 47.9 21.2 70 52-124 144-215 (365)
172 3hrp_A Uncharacterized protein 95.4 3.2 0.00011 45.4 25.2 149 53-213 141-299 (409)
173 1mda_H Methylamine dehydrogena 95.4 2 6.9E-05 46.6 23.1 182 52-257 30-242 (368)
174 1pjx_A Dfpase, DIISOPROPYLFLUO 95.4 2.8 9.7E-05 42.7 24.7 187 54-255 83-299 (314)
175 2xyi_A Probable histone-bindin 95.3 1.5 5.2E-05 47.8 22.3 186 54-255 142-353 (430)
176 3scy_A Hypothetical bacterial 95.3 3.4 0.00012 43.4 38.4 194 55-257 15-244 (361)
177 1zgk_A Kelch-like ECH-associat 95.2 2 6.7E-05 44.7 21.6 197 45-257 16-242 (308)
178 2xn4_A Kelch-like protein 2; s 95.2 2.6 9E-05 43.4 22.5 189 53-257 15-231 (302)
179 3jro_A Fusion protein of prote 95.2 0.55 1.9E-05 55.8 19.2 192 52-257 20-240 (753)
180 3ii7_A Kelch-like protein 7; p 95.1 3.6 0.00012 42.4 25.4 189 53-257 55-274 (306)
181 1mda_H Methylamine dehydrogena 95.1 0.65 2.2E-05 50.6 18.0 66 50-115 73-158 (368)
182 3ii7_A Kelch-like protein 7; p 95.1 2.9 9.8E-05 43.2 22.5 189 53-257 11-227 (306)
183 2oaj_A Protein SNI1; WD40 repe 95.1 1.9 6.5E-05 52.5 24.0 190 52-257 28-244 (902)
184 3pe7_A Oligogalacturonate lyas 95.0 0.59 2E-05 49.6 17.3 152 51-214 45-228 (388)
185 2dg1_A DRP35, lactonase; beta 95.0 2.9 9.8E-05 43.3 22.3 150 53-216 55-219 (333)
186 2hqs_A Protein TOLB; TOLB, PAL 95.0 2.6 9E-05 45.9 22.9 188 53-257 143-346 (415)
187 2xzm_R RACK1; ribosome, transl 95.0 2.4 8.2E-05 44.5 21.7 104 52-162 38-148 (343)
188 3iz6_a 40S ribosomal protein R 94.9 0.96 3.3E-05 48.5 18.5 118 52-170 217-336 (380)
189 2zux_A YESW protein; beta-prop 94.8 0.88 3E-05 51.8 18.0 144 65-219 231-408 (591)
190 3pe7_A Oligogalacturonate lyas 94.8 1.8 6E-05 45.8 20.2 198 51-257 90-331 (388)
191 2vpj_A Kelch-like protein 12; 94.7 4.5 0.00015 41.5 23.9 191 53-257 62-280 (301)
192 3hrp_A Uncharacterized protein 94.7 6.3 0.00022 43.0 26.7 203 52-265 181-408 (409)
193 2p9w_A MAL S 1 allergenic prot 94.6 1.2 4E-05 47.8 17.8 154 53-211 24-215 (334)
194 3dwl_C Actin-related protein 2 94.6 0.064 2.2E-06 57.1 8.2 107 52-166 22-134 (377)
195 3fm0_A Protein CIAO1; WDR39,SG 94.5 2 6.7E-05 45.3 19.7 108 52-165 27-138 (345)
196 1nr0_A Actin interacting prote 94.5 1.9 6.5E-05 49.6 20.9 188 55-257 162-357 (611)
197 3e5z_A Putative gluconolactona 94.5 1.6 5.5E-05 44.6 18.4 138 62-217 152-292 (296)
198 4ggc_A P55CDC, cell division c 94.4 4.8 0.00016 40.7 31.5 148 56-218 38-188 (318)
199 2ghs_A AGR_C_1268P; regucalcin 94.3 5.3 0.00018 41.8 22.5 143 53-212 60-213 (326)
200 4gq1_A NUP37; propeller, trans 94.2 7.1 0.00024 41.8 23.7 110 55-170 103-225 (393)
201 3scy_A Hypothetical bacterial 94.1 6.5 0.00022 41.1 35.6 198 51-257 59-295 (361)
202 4e54_B DNA damage-binding prot 94.1 0.81 2.8E-05 50.0 16.1 191 53-257 132-329 (435)
203 1fwx_A Nitrous oxide reductase 94.0 3.2 0.00011 47.8 21.0 143 52-211 146-361 (595)
204 2p9w_A MAL S 1 allergenic prot 93.9 5.3 0.00018 42.7 21.0 151 95-255 23-215 (334)
205 3v9f_A Two-component system se 93.8 14 0.00047 43.7 28.9 152 53-216 323-483 (781)
206 2ymu_A WD-40 repeat protein; u 93.8 10 0.00036 42.2 38.7 108 52-170 191-299 (577)
207 4a2l_A BT_4663, two-component 93.8 6.6 0.00023 46.6 24.4 151 53-214 367-529 (795)
208 3jro_A Fusion protein of prote 93.5 2.8 9.6E-05 49.7 20.3 197 53-256 67-286 (753)
209 2w18_A PALB2, fancn, partner a 93.4 9 0.00031 41.3 21.9 155 53-218 144-321 (356)
210 3vu4_A KMHSV2; beta-propeller 93.4 9.1 0.00031 40.3 24.3 143 53-214 110-274 (355)
211 2xdw_A Prolyl endopeptidase; a 93.4 3 0.0001 48.9 20.2 194 51-257 134-370 (710)
212 2xyi_A Probable histone-bindin 93.3 4.9 0.00017 43.6 20.5 175 70-256 114-310 (430)
213 2qe8_A Uncharacterized protein 93.1 4.5 0.00015 42.6 19.3 112 53-170 27-160 (343)
214 2woz_A Kelch repeat and BTB do 93.1 7.3 0.00025 40.4 20.7 188 53-257 15-233 (318)
215 3v9f_A Two-component system se 93.1 1.9 6.3E-05 51.4 17.8 150 53-215 417-572 (781)
216 2ecf_A Dipeptidyl peptidase IV 93.0 9 0.00031 44.6 23.5 156 51-218 118-328 (741)
217 3dw8_B Serine/threonine-protei 93.0 0.7 2.4E-05 49.9 12.9 154 53-215 189-377 (447)
218 4hw6_A Hypothetical protein, I 92.9 6 0.00021 43.7 20.6 147 53-214 152-309 (433)
219 3tc9_A Hypothetical hydrolase; 92.9 6.3 0.00022 43.4 20.7 150 53-214 149-306 (430)
220 2oaj_A Protein SNI1; WD40 repe 92.8 4.4 0.00015 49.3 20.9 155 53-217 69-248 (902)
221 3g4e_A Regucalcin; six bladed 92.6 10 0.00035 38.7 26.6 147 95-257 24-184 (297)
222 4a2l_A BT_4663, two-component 92.4 3.4 0.00012 49.2 19.0 197 53-264 183-393 (795)
223 2z3z_A Dipeptidyl aminopeptida 92.4 4.9 0.00017 46.6 20.0 104 53-168 35-160 (706)
224 2zuy_A YESX protein; beta-prop 92.2 4 0.00014 46.7 17.8 148 64-219 234-412 (620)
225 1zgk_A Kelch-like ECH-associat 92.2 12 0.0004 38.6 22.5 193 53-263 70-293 (308)
226 2p4o_A Hypothetical protein; p 92.1 12 0.00041 38.5 23.9 150 53-215 82-245 (306)
227 4e54_B DNA damage-binding prot 91.9 1.3 4.3E-05 48.5 13.3 154 53-218 177-334 (435)
228 2xzm_R RACK1; ribosome, transl 91.8 14 0.00047 38.5 25.8 189 52-257 87-287 (343)
229 2xdw_A Prolyl endopeptidase; a 91.6 5.8 0.0002 46.4 19.5 156 51-213 242-416 (710)
230 2xn4_A Kelch-like protein 2; s 91.6 13 0.00045 37.9 23.5 193 53-263 61-282 (302)
231 2ymu_A WD-40 repeat protein; u 91.5 20 0.00069 39.8 36.9 181 52-254 273-456 (577)
232 2dg1_A DRP35, lactonase; beta 91.3 8.1 0.00028 39.8 18.3 147 96-255 56-213 (333)
233 2fp8_A Strictosidine synthase; 91.2 10 0.00036 39.2 19.0 148 53-212 29-217 (322)
234 3dr2_A Exported gluconolactona 91.0 2.5 8.6E-05 43.6 13.9 131 62-209 168-304 (305)
235 3qqz_A Putative uncharacterize 91.0 15 0.00052 37.5 23.4 70 52-123 37-108 (255)
236 1jof_A Carboxy-CIS,CIS-muconat 90.8 18 0.00061 38.0 34.4 191 55-257 4-228 (365)
237 3azo_A Aminopeptidase; POP fam 90.8 6.5 0.00022 45.1 18.5 151 51-214 139-328 (662)
238 3dr2_A Exported gluconolactona 90.6 17 0.00057 37.3 20.6 146 53-213 56-226 (305)
239 2ojh_A Uncharacterized protein 90.6 14 0.00047 36.3 24.2 102 104-214 20-122 (297)
240 2uvk_A YJHT; unknown function, 90.4 19 0.00066 37.6 21.9 194 53-257 65-344 (357)
241 3elq_A Arylsulfate sulfotransf 90.3 11 0.00039 43.1 19.3 64 156-221 472-550 (571)
242 2ece_A 462AA long hypothetical 90.3 26 0.0009 39.0 26.1 162 53-221 25-247 (462)
243 1fwx_A Nitrous oxide reductase 90.2 8.7 0.0003 44.3 18.2 181 53-256 101-309 (595)
244 3dwl_C Actin-related protein 2 90.1 2.3 8E-05 44.6 12.9 67 52-118 66-134 (377)
245 2uvk_A YJHT; unknown function, 90.0 21 0.00071 37.4 23.3 177 53-240 19-258 (357)
246 3fm0_A Protein CIAO1; WDR39,SG 89.9 6 0.00021 41.4 15.9 67 52-118 72-139 (345)
247 2zwa_A Leucine carboxyl methyl 89.9 22 0.00076 41.7 22.3 199 52-263 396-641 (695)
248 1z68_A Fibroblast activation p 89.7 2.2 7.5E-05 49.8 13.3 105 53-167 26-143 (719)
249 2qe8_A Uncharacterized protein 89.5 19 0.00066 37.6 19.5 70 53-123 77-161 (343)
250 3c5m_A Oligogalacturonate lyas 89.1 6.8 0.00023 41.1 15.7 157 51-215 90-277 (396)
251 1yr2_A Prolyl oligopeptidase; 89.0 12 0.0004 44.1 19.1 62 155-218 295-357 (741)
252 2z3z_A Dipeptidyl aminopeptida 88.5 40 0.0014 38.7 32.8 149 54-213 93-295 (706)
253 1xfd_A DIP, dipeptidyl aminope 88.2 10 0.00036 43.8 17.7 105 53-167 27-147 (723)
254 2ghs_A AGR_C_1268P; regucalcin 87.9 22 0.00075 36.9 18.5 146 95-256 60-213 (326)
255 3iuj_A Prolyl endopeptidase; h 87.7 28 0.00097 40.5 21.1 99 154-257 259-361 (693)
256 1npe_A Nidogen, entactin; glyc 87.2 25 0.00087 35.0 21.9 149 53-219 90-246 (267)
257 1npe_A Nidogen, entactin; glyc 87.2 25 0.00087 34.9 26.4 192 52-264 46-246 (267)
258 2pm7_B Protein transport prote 87.0 28 0.00096 35.2 25.6 107 52-164 20-133 (297)
259 3azo_A Aminopeptidase; POP fam 86.4 29 0.00099 39.6 20.0 68 51-118 197-277 (662)
260 3sre_A PON1, serum paraoxonase 86.4 38 0.0013 36.3 19.5 74 53-127 60-162 (355)
261 2ojh_A Uncharacterized protein 86.1 27 0.00091 34.2 25.4 140 61-215 20-166 (297)
262 2bkl_A Prolyl endopeptidase; m 86.0 25 0.00085 40.8 19.4 66 52-119 78-160 (695)
263 1xfd_A DIP, dipeptidyl aminope 85.5 34 0.0012 39.3 20.2 65 51-120 70-148 (723)
264 3elq_A Arylsulfate sulfotransf 85.3 14 0.00049 42.2 16.0 99 22-125 177-302 (571)
265 3c5m_A Oligogalacturonate lyas 85.1 12 0.00041 39.1 14.7 70 51-123 45-119 (396)
266 2j04_A TAU60, YPL007P, hypothe 84.8 18 0.00063 41.5 16.6 109 51-170 139-262 (588)
267 4hw6_A Hypothetical protein, I 83.0 59 0.002 35.6 22.8 199 53-265 192-431 (433)
268 2j04_B YDR362CP, TAU91; beta p 82.9 15 0.0005 41.6 14.9 151 54-217 226-392 (524)
269 2j04_A TAU60, YPL007P, hypothe 82.7 18 0.00063 41.5 15.5 149 50-214 94-257 (588)
270 3o4h_A Acylamino-acid-releasin 82.6 16 0.00056 41.1 15.3 67 51-119 159-231 (582)
271 3o4h_A Acylamino-acid-releasin 82.5 63 0.0022 36.1 20.3 103 146-257 123-229 (582)
272 3ott_A Two-component system se 81.7 26 0.00091 41.1 17.2 151 53-215 383-549 (758)
273 2w18_A PALB2, fancn, partner a 81.2 63 0.0021 34.7 25.4 147 104-257 155-316 (356)
274 2j04_B YDR362CP, TAU91; beta p 80.2 12 0.00042 42.3 13.0 110 53-171 277-394 (524)
275 1yr2_A Prolyl oligopeptidase; 79.9 50 0.0017 38.6 18.7 74 52-125 278-360 (741)
276 3amr_A 3-phytase; beta-propell 79.0 73 0.0025 34.1 23.8 197 53-266 40-274 (355)
277 3v65_B Low-density lipoprotein 78.3 76 0.0026 33.9 25.7 142 54-210 88-233 (386)
278 1xip_A Nucleoporin NUP159; bet 77.4 85 0.0029 34.0 19.7 110 95-226 96-206 (388)
279 1ijq_A LDL receptor, low-densi 77.0 72 0.0025 32.9 28.0 188 53-257 41-240 (316)
280 3m0c_C LDL receptor, low-densi 76.8 1.3E+02 0.0044 35.8 26.7 183 55-254 397-588 (791)
281 2bkl_A Prolyl endopeptidase; m 76.8 49 0.0017 38.3 17.2 143 63-219 147-313 (695)
282 2hes_X YDR267CP; beta-propelle 76.2 73 0.0025 32.6 22.5 65 52-116 69-139 (330)
283 1k32_A Tricorn protease; prote 76.1 40 0.0014 41.2 17.0 104 53-165 348-463 (1045)
284 2oit_A Nucleoporin 214KDA; NH2 75.7 95 0.0032 33.7 19.3 112 52-171 103-230 (434)
285 1k32_A Tricorn protease; prote 75.0 1E+02 0.0035 37.6 20.2 146 53-213 308-463 (1045)
286 3m0c_C LDL receptor, low-densi 74.5 1.5E+02 0.005 35.3 30.1 190 53-257 435-634 (791)
287 1k3i_A Galactose oxidase precu 73.7 66 0.0022 37.1 17.1 68 52-123 252-329 (656)
288 4gq1_A NUP37; propeller, trans 73.7 87 0.003 33.0 17.1 69 54-123 157-226 (393)
289 2ism_A Putative oxidoreductase 73.5 95 0.0032 32.7 23.1 61 53-117 41-116 (352)
290 1z68_A Fibroblast activation p 73.3 53 0.0018 37.8 16.3 65 51-119 69-143 (719)
291 3sov_A LRP-6, low-density lipo 73.3 91 0.0031 32.4 24.2 187 53-257 46-240 (318)
292 2ece_A 462AA long hypothetical 73.3 1.2E+02 0.0041 33.7 30.0 191 52-254 94-351 (462)
293 3iuj_A Prolyl endopeptidase; h 72.0 86 0.0029 36.3 17.7 105 52-164 244-360 (693)
294 3bg1_A Protein SEC13 homolog; 71.1 19 0.00064 37.0 10.5 66 52-117 24-92 (316)
295 3ott_A Two-component system se 70.9 91 0.0031 36.4 17.7 150 52-215 428-590 (758)
296 1n7d_A LDL receptor, low-densi 70.2 47 0.0016 38.9 14.8 188 53-257 417-616 (699)
297 1k3i_A Galactose oxidase precu 70.2 18 0.00063 41.8 11.3 143 65-218 168-328 (656)
298 3v65_B Low-density lipoprotein 68.2 1.3E+02 0.0044 32.0 25.5 185 53-257 127-320 (386)
299 3sov_A LRP-6, low-density lipo 66.8 1.2E+02 0.0042 31.3 24.9 183 55-254 6-196 (318)
300 2oit_A Nucleoporin 214KDA; NH2 66.7 1.5E+02 0.005 32.1 17.5 110 95-216 103-227 (434)
301 3kya_A Putative phosphatase; s 65.3 1.8E+02 0.0061 32.6 21.6 152 53-214 151-346 (496)
302 2zux_A YESW protein; beta-prop 65.2 65 0.0022 36.7 13.7 109 63-175 151-315 (591)
303 4a0p_A LRP6, LRP-6, low-densit 64.0 2.1E+02 0.0071 32.9 26.5 143 55-210 8-154 (628)
304 3s94_A LRP-6, low-density lipo 63.1 2.1E+02 0.0073 32.7 20.9 104 95-209 50-157 (619)
305 2zwa_A Leucine carboxyl methyl 61.8 2E+02 0.0069 33.4 18.1 155 94-257 396-579 (695)
306 3p5b_L Low density lipoprotein 61.0 1.8E+02 0.0061 31.1 27.2 182 55-254 85-276 (400)
307 3amr_A 3-phytase; beta-propell 58.4 1.7E+02 0.0058 31.2 15.0 104 55-162 145-262 (355)
308 2gop_A Trilobed protease; beta 58.3 1.6E+02 0.0054 29.7 19.1 66 51-119 68-165 (347)
309 2pm7_B Protein transport prote 58.3 1.5E+02 0.0052 29.5 23.6 65 53-117 67-134 (297)
310 3v64_C Agrin; beta propeller, 58.2 1.8E+02 0.0062 30.3 27.2 143 53-210 44-190 (349)
311 3p5b_L Low density lipoprotein 57.4 2E+02 0.0069 30.7 29.2 190 53-257 123-322 (400)
312 3a9g_A Putative uncharacterize 57.3 1.9E+02 0.0066 30.3 17.8 30 40-74 30-59 (354)
313 1n7d_A LDL receptor, low-densi 54.3 39 0.0013 39.6 10.1 150 53-218 464-621 (699)
314 2hes_X YDR267CP; beta-propelle 53.8 1.9E+02 0.0066 29.3 32.2 63 53-115 24-89 (330)
315 3kya_A Putative phosphatase; s 52.7 2.8E+02 0.0097 30.9 21.7 62 53-114 204-277 (496)
316 2xe4_A Oligopeptidase B; hydro 51.9 3.4E+02 0.012 31.6 18.2 136 64-212 202-355 (751)
317 3tc9_A Hypothetical hydrolase; 50.6 2.7E+02 0.0092 30.0 25.1 198 53-265 190-428 (430)
318 1tl2_A L10, protein (tachylect 50.2 31 0.0011 34.7 7.1 27 53-80 51-78 (236)
319 3sd2_A Putative member of DUF3 47.2 24 0.00084 30.7 4.9 39 703-754 30-68 (101)
320 4a5s_A Dipeptidyl peptidase 4 45.4 4E+02 0.014 30.6 19.8 65 50-119 70-145 (740)
321 2zuy_A YESX protein; beta-prop 45.0 1.9E+02 0.0065 33.1 13.1 108 64-175 156-319 (620)
322 1ijq_A LDL receptor, low-densi 43.5 2.8E+02 0.0096 28.2 27.1 181 56-254 4-194 (316)
323 3v64_C Agrin; beta propeller, 40.1 3.4E+02 0.012 28.2 25.6 185 53-257 84-277 (349)
324 4a5s_A Dipeptidyl peptidase 4 39.1 4.9E+02 0.017 29.8 25.4 102 53-166 27-144 (740)
325 2xzh_A Clathrin heavy chain 1; 38.8 1.2E+02 0.0042 32.3 9.8 63 51-114 269-331 (365)
326 4a0p_A LRP6, LRP-6, low-densit 36.2 5.3E+02 0.018 29.4 26.3 185 52-257 47-239 (628)
327 3d33_A Domain of unknown funct 35.8 58 0.002 28.7 5.7 41 702-754 32-72 (108)
328 3mez_B Mannose-specific lectin 35.5 98 0.0034 27.0 7.3 63 93-172 22-84 (113)
329 3mez_B Mannose-specific lectin 34.8 1.9E+02 0.0066 25.0 9.2 58 56-124 27-84 (113)
330 3bg1_A Protein SEC13 homolog; 34.0 2E+02 0.0067 29.0 10.6 64 97-165 26-92 (316)
331 4h3o_A Lectin; cadmium, plant 32.1 1.7E+02 0.0059 25.0 8.3 81 57-169 23-104 (105)
332 3a0c_A Mannose/sialic acid-bin 30.8 97 0.0033 26.9 6.5 59 94-171 19-77 (110)
333 1bpo_A Protein (clathrin); cla 30.8 1.8E+02 0.0061 32.3 9.7 63 50-113 267-329 (494)
334 1xd5_A Gastrodianin-1, antifun 30.4 2.6E+02 0.0089 24.0 9.9 51 60-124 26-76 (112)
335 3qqz_A Putative uncharacterize 30.3 4.3E+02 0.015 26.5 22.4 112 87-208 29-150 (255)
336 3a0c_A Mannose/sialic acid-bin 27.7 2.9E+02 0.0099 23.7 9.4 54 59-125 26-79 (110)
337 1tl2_A L10, protein (tachylect 27.6 4.2E+02 0.014 26.5 11.1 29 143-171 96-125 (236)
338 3ei3_A DNA damage-binding prot 25.4 1E+03 0.035 29.3 21.1 159 53-219 483-646 (1158)
339 2xbg_A YCF48-like protein; pho 24.3 5.7E+02 0.02 25.9 16.7 178 23-218 58-240 (327)
340 3s94_A LRP-6, low-density lipo 23.3 8.5E+02 0.029 27.6 25.3 186 52-257 50-245 (619)
341 1xd5_A Gastrodianin-1, antifun 20.2 2.5E+02 0.0084 24.1 7.1 57 94-171 18-75 (112)
No 1
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.77 E-value=3.4e-16 Score=171.81 Aligned_cols=216 Identities=16% Similarity=0.290 Sum_probs=148.1
Q ss_pred ecccccEeeEEeccCceeee-eeeeeccCCCEEEEEeCCCEEEEEECcCCccceEEEcCcc--------cceeeeeeeeC
Q 003800 25 EDQVGLMDWHQQYIGKVKHA-VFHTQKTGRKRVVVSTEENVIASLDLRHGEIFWRHVLGIN--------DVVDGIDIALG 95 (794)
Q Consensus 25 edqvG~~dW~~~~vG~~~~~-~f~~~~~~~~~Vyv~t~~g~l~ALn~~tG~ivWR~~l~~~--------~~i~~l~~~~g 95 (794)
.+..++..|+.++-+..... ....|...+++||+++.+|.|+|+|++||+++|++.+... ..+... +...
T Consensus 24 ~~~~~~~~W~~~~~~~~~~~~~~~~p~v~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~ 102 (376)
T 3q7m_A 24 NQFTPTTAWSTSVGSGIGNFYSNLHPALADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGG-VTVS 102 (376)
T ss_dssp CSSCCEEEEEECCTTTTTTSCCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEE-EEEE
T ss_pred CCCcceEEeEEecCCCccccceeeccEEECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccC-ceEe
Confidence 34567899999873221111 1124555689999999999999999999999999998542 112222 3445
Q ss_pred CEEEEEEccCCeEEEEeCCCCcEeEEEeccCccccCCccccccccccccCCeEEEEE-CCEEEEEECCCCcEEEEEeccC
Q 003800 96 KYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSS-KGCLHAVSSIDGEILWTRDFAA 174 (794)
Q Consensus 96 ~~~V~Vs~~g~~v~A~d~~tG~llWe~~l~~~~~s~~~~~~~~~~~~~~~~~V~V~~-~g~l~ald~~tG~~~W~~~~~~ 174 (794)
++.+++++.++.|+++|+.||+++|+..+..... ..+.+ . ++.+++.. ++.|+++|+.||+++|+++.+.
T Consensus 103 ~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~--~~p~~------~-~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~ 173 (376)
T 3q7m_A 103 GGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEAL--SRPVV------S-DGLVLIHTSNGQLQALNEADGAVKWTVNLDM 173 (376)
T ss_dssp TTEEEEEETTSEEEEEETTTCCEEEEEECSSCCC--SCCEE------E-TTEEEEECTTSEEEEEETTTCCEEEEEECCC
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceE--cCCEE------E-CCEEEEEcCCCeEEEEECCCCcEEEEEeCCC
Confidence 5667777666799999999999999999876543 22222 2 56777774 8999999999999999998865
Q ss_pred cceee---eeEEEEecCCEEEEEEecCCceeEEEEEEcCCCceeeeeeeecccC---------ccCceEEEcCcEEEEEE
Q 003800 175 ESVEV---QQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAFSGG---------FVGDVALVSSDTLVTLD 242 (794)
Q Consensus 175 ~~~~~---~~~v~s~~~~~vyv~~~~g~~~~~v~ald~~tG~~~w~~~v~~~~~---------~s~~~~~vg~~~lv~~d 242 (794)
+.... ... ...++.+|+....| .++++|+.||+.+|+.....+.+ +...+++.++.+++ ..
T Consensus 174 ~~~~~~~~~~~--~~~~~~v~~g~~~g----~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~-~~ 246 (376)
T 3q7m_A 174 PSLSLRGESAP--TTAFGAAVVGGDNG----RVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFA-LA 246 (376)
T ss_dssp -----CCCCCC--EEETTEEEECCTTT----EEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEE-EC
T ss_pred CceeecCCCCc--EEECCEEEEEcCCC----EEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEE-Ee
Confidence 43200 111 23578888754344 89999999999999997665432 22344444444443 33
Q ss_pred CCCCeEEEEEeeccee
Q 003800 243 TTRSILVTVSFKNRKI 258 (794)
Q Consensus 243 ~~~g~L~v~~l~sg~~ 258 (794)
.++.++++|..+|++
T Consensus 247 -~~g~l~~~d~~tG~~ 261 (376)
T 3q7m_A 247 -YNGNLTALDLRSGQI 261 (376)
T ss_dssp -TTSCEEEEETTTCCE
T ss_pred -cCcEEEEEECCCCcE
Confidence 467899999999883
No 2
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.69 E-value=1.8e-15 Score=166.09 Aligned_cols=218 Identities=13% Similarity=0.237 Sum_probs=145.5
Q ss_pred eecccccEeeEEeccCce------eeeeeeeeccCCCEEEEEeCCCEEEEEECcCCccceEEEcCcccceeeeeeeeCCE
Q 003800 24 YEDQVGLMDWHQQYIGKV------KHAVFHTQKTGRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKY 97 (794)
Q Consensus 24 ~edqvG~~dW~~~~vG~~------~~~~f~~~~~~~~~Vyv~t~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~ 97 (794)
+..+.|++.|+..+-+.. .......|...+++||+++.+|.|+|+|++||+++|++.+... +... +...++
T Consensus 68 ~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~--~~~~-p~~~~~ 144 (376)
T 3q7m_A 68 LNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGE--ALSR-PVVSDG 144 (376)
T ss_dssp EETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECSSC--CCSC-CEEETT
T ss_pred EEccCCceeeeecCccccccccccCcccccCceEeCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCc--eEcC-CEEECC
Confidence 445689999999873321 1111223445689999999999999999999999999998754 2222 233455
Q ss_pred EEEEEccCCeEEEEeCCCCcEeEEEeccCccccCCccccccccccccCCeEEEEE-CCEEEEEECCCCcEEEEEeccCcc
Q 003800 98 VITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSS-KGCLHAVSSIDGEILWTRDFAAES 176 (794)
Q Consensus 98 ~V~Vs~~g~~v~A~d~~tG~llWe~~l~~~~~s~~~~~~~~~~~~~~~~~V~V~~-~g~l~ald~~tG~~~W~~~~~~~~ 176 (794)
.+++++.++.++++|+.||+++|+.....+.........+ ... ++.+++.. +|.|+++|+.+|+++|+.+...+.
T Consensus 145 ~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~---~~~-~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~ 220 (376)
T 3q7m_A 145 LVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAP---TTA-FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQAT 220 (376)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCC---EEE-TTEEEECCTTTEEEEEETTTCCEEEEEECCC--
T ss_pred EEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCc---EEE-CCEEEEEcCCCEEEEEECCCCcEEEEEecccCC
Confidence 6777766679999999999999999986543200000111 122 56677764 899999999999999999875432
Q ss_pred ee--eee-----EEEEecCCEEEEEEecCCceeEEEEEEcCCCceeeeeeeecccCccCceEEEcCcEEEEEECCCCeEE
Q 003800 177 VE--VQQ-----VIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAFSGGFVGDVALVSSDTLVTLDTTRSILV 249 (794)
Q Consensus 177 ~~--~~~-----~v~s~~~~~vyv~~~~g~~~~~v~ald~~tG~~~w~~~v~~~~~~s~~~~~vg~~~lv~~d~~~g~L~ 249 (794)
.. ... ..+...++.+|+.+..| .++++|+.+|+.+|+...... ..+. +.++.+++.+ ..+.++
T Consensus 221 ~~~~~~~~~~~~~~p~~~~~~v~~~~~~g----~l~~~d~~tG~~~w~~~~~~~----~~~~-~~~~~l~~~~-~~g~l~ 290 (376)
T 3q7m_A 221 GSTEIDRLSDVDTTPVVVNGVVFALAYNG----NLTALDLRSGQIMWKRELGSV----NDFI-VDGNRIYLVD-QNDRVM 290 (376)
T ss_dssp ---------CCCCCCEEETTEEEEECTTS----CEEEEETTTCCEEEEECCCCE----EEEE-EETTEEEEEE-TTCCEE
T ss_pred CCcccccccccCCCcEEECCEEEEEecCc----EEEEEECCCCcEEeeccCCCC----CCce-EECCEEEEEc-CCCeEE
Confidence 10 000 01123578999876555 699999999999999864322 1233 3344444444 357899
Q ss_pred EEEeeccee
Q 003800 250 TVSFKNRKI 258 (794)
Q Consensus 250 v~~l~sg~~ 258 (794)
++|..+|+.
T Consensus 291 ~~d~~tG~~ 299 (376)
T 3q7m_A 291 ALTIDGGVT 299 (376)
T ss_dssp EEETTTCCE
T ss_pred EEECCCCcE
Confidence 999999883
No 3
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=99.60 E-value=7e-14 Score=163.78 Aligned_cols=227 Identities=16% Similarity=0.190 Sum_probs=145.9
Q ss_pred cccEeeEEeccCceeeeeeeeeccCCCEEEEEeCCCEEEEEECcCCccceEEEcCcccce--------eeeeeeeCCEEE
Q 003800 28 VGLMDWHQQYIGKVKHAVFHTQKTGRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVV--------DGIDIALGKYVI 99 (794)
Q Consensus 28 vG~~dW~~~~vG~~~~~~f~~~~~~~~~Vyv~t~~g~l~ALn~~tG~ivWR~~l~~~~~i--------~~l~~~~g~~~V 99 (794)
.++..|+.++-+.........|...+++||+.+..+.|+|||++||+++|++.+...... .+. ...++.|
T Consensus 43 ~~~~~W~~~~~~~~~~g~~~~P~v~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~--a~~~~~v 120 (582)
T 1flg_A 43 KLTPAWSYSFGDEKQRGQESQAIVSDGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGA--AIYGDKV 120 (582)
T ss_dssp GCEEEEEEECCTTCCSCCCCCCEEETTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCC--EEETTEE
T ss_pred CCcEEEEEECCCccCCcceeccEEECCEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCcc--EEECCEE
Confidence 478999998844322111233555689999999966699999999999999998754211 122 3455677
Q ss_pred EEEccCCeEEEEeCCCCcEeEEEeccCccc---cCCccccccccccccCC------eEEEEE-------CCEEEEEECCC
Q 003800 100 TLSSDGSTLRAWNLPDGQMVWESFLRGSKH---SKPLLLVPTNLKVDKDS------LILVSS-------KGCLHAVSSID 163 (794)
Q Consensus 100 ~Vs~~g~~v~A~d~~tG~llWe~~l~~~~~---s~~~~~~~~~~~~~~~~------~V~V~~-------~g~l~ald~~t 163 (794)
+++..++.|+|+|++||+++|+..+..... ....+++ . ++ .|++.. +|.|+|||+.|
T Consensus 121 ~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v------~-~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~t 193 (582)
T 1flg_A 121 FFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTI------V-KDGKTGKVLLIHGSSGDEFGVVGRLFARDPDT 193 (582)
T ss_dssp EEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEE------E-ECTTTCCEEEEECCBCGGGCCBCEEEEECTTT
T ss_pred EEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEE------e-CCCcCCcEEEEEeccccccCCCCEEEEEECCC
Confidence 777666799999999999999998765211 0112222 1 23 566643 68999999999
Q ss_pred CcEEEEEeccCcceee---------------------------------------eeEEEEecCCEEEEEEe--------
Q 003800 164 GEILWTRDFAAESVEV---------------------------------------QQVIQLDESDQIYVVGY-------- 196 (794)
Q Consensus 164 G~~~W~~~~~~~~~~~---------------------------------------~~~v~s~~~~~vyv~~~-------- 196 (794)
|+++|+.........+ ..+......+.||+...
T Consensus 194 G~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~ 273 (582)
T 1flg_A 194 GEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTW 273 (582)
T ss_dssp CCEEEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGG
T ss_pred CCEEeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCc
Confidence 9999998653211000 00111124578887653
Q ss_pred ----cC--------CceeEEEEEEcCCCceeeeeeeecc--cCc--cCceEEEc-----C---cEEEEEECCCCeEEEEE
Q 003800 197 ----AG--------SSQFHAYQINAMNGELLNHETAAFS--GGF--VGDVALVS-----S---DTLVTLDTTRSILVTVS 252 (794)
Q Consensus 197 ----~g--------~~~~~v~ald~~tG~~~w~~~v~~~--~~~--s~~~~~vg-----~---~~lv~~d~~~g~L~v~~ 252 (794)
.| .....++|||++||+.+|+++.... ++. ...++++. + ..+++.+ .+|.++++|
T Consensus 274 ~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~-~~G~l~~lD 352 (582)
T 1flg_A 274 ARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHAD-RNGFFYVVD 352 (582)
T ss_dssp GGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEEC-TTSEEEEEE
T ss_pred ccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEEC-CCceEEEEE
Confidence 11 0113799999999999999975322 111 12334432 1 2455555 579999999
Q ss_pred eecceeeeEEEee
Q 003800 253 FKNRKIAFQETHL 265 (794)
Q Consensus 253 l~sg~~~~~~~~l 265 (794)
..+|++ +-++++
T Consensus 353 ~~tG~~-lw~~~~ 364 (582)
T 1flg_A 353 RSNGKL-QNAFPF 364 (582)
T ss_dssp TTTCCE-EEEEES
T ss_pred CCCCCE-eccccc
Confidence 999983 444443
No 4
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.59 E-value=3.6e-14 Score=169.17 Aligned_cols=225 Identities=16% Similarity=0.149 Sum_probs=147.5
Q ss_pred cccEeeEEeccCceeeeeeeeeccCCCEEEEEeCCCEEEEEECcCCccceEEEcCcccce--------eeeeeeeCCEEE
Q 003800 28 VGLMDWHQQYIGKVKHAVFHTQKTGRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVV--------DGIDIALGKYVI 99 (794)
Q Consensus 28 vG~~dW~~~~vG~~~~~~f~~~~~~~~~Vyv~t~~g~l~ALn~~tG~ivWR~~l~~~~~i--------~~l~~~~g~~~V 99 (794)
.+++.|++++ |... .....|...+++||+.+.++.|+|||++||+++|++.+...... ..-.+...++.|
T Consensus 54 ~~~~~W~~~~-~~~~-g~~~~P~v~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v 131 (677)
T 1kb0_A 54 DLGLAWSYNL-ESTR-GVEATPVVVDGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKV 131 (677)
T ss_dssp GEEEEEEEEC-CCCS-CCCCCCEEETTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEE
T ss_pred CccEEEEEEC-CCCC-CceeCCEEECCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEECCEE
Confidence 3578899987 3221 11233445589999999999999999999999999988754211 001123456677
Q ss_pred EEEccCCeEEEEeCCCCcEeEEEecc-Cc----cccCCccccccccccccCCeEEEEE-------CCEEEEEECCCCcEE
Q 003800 100 TLSSDGSTLRAWNLPDGQMVWESFLR-GS----KHSKPLLLVPTNLKVDKDSLILVSS-------KGCLHAVSSIDGEIL 167 (794)
Q Consensus 100 ~Vs~~g~~v~A~d~~tG~llWe~~l~-~~----~~s~~~~~~~~~~~~~~~~~V~V~~-------~g~l~ald~~tG~~~ 167 (794)
++++.++.|+|||+.||+++|+.... .. .. ...+++ . ++.|++.. +|.|+++|+.||+++
T Consensus 132 ~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~-~~~p~v------~-~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~ 203 (677)
T 1kb0_A 132 YVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTI-TGAPRV------F-KGKVIIGNGGAEYGVRGYITAYDAETGERK 203 (677)
T ss_dssp EEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBC-CSCCEE------E-TTEEEECCBCTTTCCBCEEEEEETTTCCEE
T ss_pred EEEcCCCEEEEEECCCCCEEeeecCCcCcCcCccc-ccCcEE------E-CCEEEEEecccccCCCCEEEEEECCCCcEE
Confidence 77776689999999999999999976 21 11 112222 2 57777753 589999999999999
Q ss_pred EEEeccCcce------------------------------eeeeEEEEecCCEEEEEEecC------------Cc---ee
Q 003800 168 WTRDFAAESV------------------------------EVQQVIQLDESDQIYVVGYAG------------SS---QF 202 (794)
Q Consensus 168 W~~~~~~~~~------------------------------~~~~~v~s~~~~~vyv~~~~g------------~~---~~ 202 (794)
|++....+.. ....+......+.||+....+ +. ..
T Consensus 204 W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~ 283 (677)
T 1kb0_A 204 WRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLA 283 (677)
T ss_dssp EEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTT
T ss_pred EEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeE
Confidence 9998743220 001122123577888754332 10 12
Q ss_pred EEEEEEcCCCceeeeeeeecc--c--CccCceEEEc----C---cEEEEEECCCCeEEEEEeecceeeeEEEe
Q 003800 203 HAYQINAMNGELLNHETAAFS--G--GFVGDVALVS----S---DTLVTLDTTRSILVTVSFKNRKIAFQETH 264 (794)
Q Consensus 203 ~v~ald~~tG~~~w~~~v~~~--~--~~s~~~~~vg----~---~~lv~~d~~~g~L~v~~l~sg~~~~~~~~ 264 (794)
.++|||+.||+.+|+++.... + .....++++. + +.++..+ .+|.++++|..+|++ +..++
T Consensus 284 sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~-~~G~l~~lD~~tG~~-l~~~~ 354 (677)
T 1kb0_A 284 SIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAP-KNGFFFVLDRTNGKF-ISAKN 354 (677)
T ss_dssp EEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECC-TTSEEEEEETTTCCE-EEEEE
T ss_pred EEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEEC-CCCEEEEEECCCCCE-ecccc
Confidence 599999999999999875322 1 1222344433 2 3555555 579999999999983 44444
No 5
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=99.59 E-value=6.7e-14 Score=163.63 Aligned_cols=226 Identities=16% Similarity=0.166 Sum_probs=146.2
Q ss_pred ccEeeEEeccCceeeeeeeeeccCCCEEEEEeC-CCEEEEEEC-cCCccceEEEcCccccee--------eeeeeeCCEE
Q 003800 29 GLMDWHQQYIGKVKHAVFHTQKTGRKRVVVSTE-ENVIASLDL-RHGEIFWRHVLGINDVVD--------GIDIALGKYV 98 (794)
Q Consensus 29 G~~dW~~~~vG~~~~~~f~~~~~~~~~Vyv~t~-~g~l~ALn~-~tG~ivWR~~l~~~~~i~--------~l~~~~g~~~ 98 (794)
+++.|+.++ |... .....|...+++||+.+. ++.|+|||+ +||+++|++.+....... .-.+...++.
T Consensus 40 l~~~W~~~~-~~~~-g~~~~P~v~~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (571)
T 2ad6_A 40 VKAAWSFST-GVLN-GHEGAPLVIGDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQ 117 (571)
T ss_dssp CEEEEEEEC-SCCS-CCCSCCEEETTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTE
T ss_pred ccEEEEEEC-CCCC-CcccccEEECCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEECCE
Confidence 468999987 3211 112335456899999999 899999999 999999999887542110 0012445667
Q ss_pred EEEEccCCeEEEEeCCCCcEeEEEeccCccc---cCCccccccccccccCCeEEEEE-------CCEEEEEECCCCcEEE
Q 003800 99 ITLSSDGSTLRAWNLPDGQMVWESFLRGSKH---SKPLLLVPTNLKVDKDSLILVSS-------KGCLHAVSSIDGEILW 168 (794)
Q Consensus 99 V~Vs~~g~~v~A~d~~tG~llWe~~l~~~~~---s~~~~~~~~~~~~~~~~~V~V~~-------~g~l~ald~~tG~~~W 168 (794)
|++++.++.|+|+|+.||+++|+..+..... ....++ +. ++.|++.. +|.|+|+|++||+++|
T Consensus 118 v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~------v~-~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W 190 (571)
T 2ad6_A 118 IVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPF------VA-KDTVLMGCSGAELGVRGAVNAFDLKTGELKW 190 (571)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCE------EE-TTEEEEECBCGGGTCCCEEEEEETTTCCEEE
T ss_pred EEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCE------EE-CCEEEEEecCCccCCCCEEEEEECCCCcEEE
Confidence 7777766799999999999999998765211 011122 22 56777763 5899999999999999
Q ss_pred EEeccCccee----e--------------------------------eeEEEEecCCEEEEEEecC---------Cc---
Q 003800 169 TRDFAAESVE----V--------------------------------QQVIQLDESDQIYVVGYAG---------SS--- 200 (794)
Q Consensus 169 ~~~~~~~~~~----~--------------------------------~~~v~s~~~~~vyv~~~~g---------~~--- 200 (794)
++....+... + ..+......+.+|+....+ +.
T Consensus 191 ~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y 270 (571)
T 2ad6_A 191 RAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKW 270 (571)
T ss_dssp EEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTT
T ss_pred EEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCcee
Confidence 9987532200 0 0111112357888754321 11
Q ss_pred eeEEEEEEcCCCceeeeeeeecc--c--CccCceEEEc----C---cEEEEEECCCCeEEEEEeecceeeeEEEee
Q 003800 201 QFHAYQINAMNGELLNHETAAFS--G--GFVGDVALVS----S---DTLVTLDTTRSILVTVSFKNRKIAFQETHL 265 (794)
Q Consensus 201 ~~~v~ald~~tG~~~w~~~v~~~--~--~~s~~~~~vg----~---~~lv~~d~~~g~L~v~~l~sg~~~~~~~~l 265 (794)
...++|||+.||+.+|+++.... + +....+++++ + .++++.+ .+|.++++|..+|++ +-++++
T Consensus 271 ~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~-~~G~l~~lD~~tG~~-~w~~~~ 344 (571)
T 2ad6_A 271 TMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHID-RNGILYTLNRENGNL-IVAEKV 344 (571)
T ss_dssp TTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEEC-TTSEEEEEETTTCCE-EEEEES
T ss_pred EEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeC-CCcEEEEEECCCCCE-Eeeecc
Confidence 12699999999999999975421 1 1222344443 2 2455555 568999999999983 344443
No 6
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=99.58 E-value=7.1e-14 Score=163.94 Aligned_cols=219 Identities=18% Similarity=0.155 Sum_probs=144.6
Q ss_pred cccEeeEEeccCceeeeeeeeeccCCCEEEEEeC-CCEEEEEEC-cCCccceEEEcCcccce----------eeeeeee-
Q 003800 28 VGLMDWHQQYIGKVKHAVFHTQKTGRKRVVVSTE-ENVIASLDL-RHGEIFWRHVLGINDVV----------DGIDIAL- 94 (794)
Q Consensus 28 vG~~dW~~~~vG~~~~~~f~~~~~~~~~Vyv~t~-~g~l~ALn~-~tG~ivWR~~l~~~~~i----------~~l~~~~- 94 (794)
.++..|++++ |... .....|...+++||+.+. ++.|+|||+ +||+++|++.+...... .++ +.
T Consensus 39 ~l~~~W~~~~-g~~~-g~~~tP~v~~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~--av~ 114 (599)
T 1w6s_A 39 QLRPAWTFST-GLLN-GHEGAPLVVDGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGL--AYW 114 (599)
T ss_dssp GEEEEEEEEC-SCCS-CCCSCCEEETTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCC--EEE
T ss_pred CCcEEEEEEC-CCCC-CceeccEEECCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccce--EEE
Confidence 3578999987 3211 112335555899999999 899999999 99999999988654211 122 33
Q ss_pred -CCEE----EEEEccCCeEEEEeCCCCcEeEEEeccCccc---cCCccccccccccccCCeEEEEE-------CCEEEEE
Q 003800 95 -GKYV----ITLSSDGSTLRAWNLPDGQMVWESFLRGSKH---SKPLLLVPTNLKVDKDSLILVSS-------KGCLHAV 159 (794)
Q Consensus 95 -g~~~----V~Vs~~g~~v~A~d~~tG~llWe~~l~~~~~---s~~~~~~~~~~~~~~~~~V~V~~-------~g~l~al 159 (794)
.++. |++++.++.|+|+|+.||+++|+..+..... ....+++ . ++.|++.. +|.|+|+
T Consensus 115 p~~g~~~~rV~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v------~-~g~V~vg~~g~e~g~~g~v~A~ 187 (599)
T 1w6s_A 115 PGDGKTPALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYV------V-KDKVIIGSSGAELGVRGYLTAY 187 (599)
T ss_dssp CCCSSSCCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE------E-TTEEEECCBCGGGTCCCEEEEE
T ss_pred ecCCcceeEEEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEE------E-CCEEEEEecccccCCCCeEEEE
Confidence 4445 7777666799999999999999998765210 0112222 2 56777753 6899999
Q ss_pred ECCCCcEEEEEeccCccee------------------------------------eeeEEEEecCCEEEEEEecCC----
Q 003800 160 SSIDGEILWTRDFAAESVE------------------------------------VQQVIQLDESDQIYVVGYAGS---- 199 (794)
Q Consensus 160 d~~tG~~~W~~~~~~~~~~------------------------------------~~~~v~s~~~~~vyv~~~~g~---- 199 (794)
|+.||+++|++....+... ..........+.||+....+.
T Consensus 188 D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~ 267 (599)
T 1w6s_A 188 DVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNE 267 (599)
T ss_dssp ETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCG
T ss_pred ECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccC
Confidence 9999999999987543210 001111235678887543320
Q ss_pred --------ceeEEEEEEcCCCceeeeeeeecc--cC--ccCceEEEc-----C---cEEEEEECCCCeEEEEEeeccee
Q 003800 200 --------SQFHAYQINAMNGELLNHETAAFS--GG--FVGDVALVS-----S---DTLVTLDTTRSILVTVSFKNRKI 258 (794)
Q Consensus 200 --------~~~~v~ald~~tG~~~w~~~v~~~--~~--~s~~~~~vg-----~---~~lv~~d~~~g~L~v~~l~sg~~ 258 (794)
+.-.++|||++||+.+|+++.... ++ ....++++. + ..++..+ .+|.++++|..+|++
T Consensus 268 ~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~-~~G~l~~lD~~tG~~ 345 (599)
T 1w6s_A 268 TMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPD-RNGIVYTLDRTDGAL 345 (599)
T ss_dssp GGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEEC-TTSEEEEEETTTCCE
T ss_pred cccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEEC-CCcEEEEEECCCCCE
Confidence 012799999999999999975432 11 122334332 2 2455555 579999999999983
No 7
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.56 E-value=1.1e-13 Score=165.37 Aligned_cols=219 Identities=16% Similarity=0.157 Sum_probs=141.2
Q ss_pred ccEeeEEeccCceeeeeeeeeccCCCEEEEEeCCCEEEEEECcCCccceEEEcCcccce---------eeeeeeeCCEEE
Q 003800 29 GLMDWHQQYIGKVKHAVFHTQKTGRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVV---------DGIDIALGKYVI 99 (794)
Q Consensus 29 G~~dW~~~~vG~~~~~~f~~~~~~~~~Vyv~t~~g~l~ALn~~tG~ivWR~~l~~~~~i---------~~l~~~~g~~~V 99 (794)
+++.|+.++ |... .....|...+++||+++.++.|+|||++||+++|++........ ... +...++.|
T Consensus 48 l~~~W~~~~-~~~~-~~~~~P~v~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~v 124 (689)
T 1yiq_A 48 LGLAWSYKL-DLDR-GVEATPIVVDGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRG-VAVWKGKV 124 (689)
T ss_dssp EEEEEEEEC-SSCS-CCCCCCEEETTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCC-CEEETTEE
T ss_pred ceEEEEEEC-CCCC-CceecCEEECCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCc-cEEECCEE
Confidence 468899987 3221 11223445589999999999999999999999999987654211 111 23455677
Q ss_pred EEEccCCeEEEEeCCCCcEeEEEecc-Cccc---cCCccccccccccccCCeEEEEE-------CCEEEEEECCCCcEEE
Q 003800 100 TLSSDGSTLRAWNLPDGQMVWESFLR-GSKH---SKPLLLVPTNLKVDKDSLILVSS-------KGCLHAVSSIDGEILW 168 (794)
Q Consensus 100 ~Vs~~g~~v~A~d~~tG~llWe~~l~-~~~~---s~~~~~~~~~~~~~~~~~V~V~~-------~g~l~ald~~tG~~~W 168 (794)
++++.++.|+|||+.||+++|+.... .... ....+++ . ++.|++.. +|.|+|+|+.||+++|
T Consensus 125 ~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v------~-~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W 197 (689)
T 1yiq_A 125 YVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRV------V-NGKVVIGNGGAEFGVRGYVTAYDAETGKEAW 197 (689)
T ss_dssp EEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEE------E-TTEEEECCBCTTTCCBCEEEEEETTTCCEEE
T ss_pred EEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEE------E-CCEEEEEeCCCccCCCCEEEEEECCCCcEEE
Confidence 77776689999999999999999875 2111 0111222 2 56777753 5899999999999999
Q ss_pred EEeccC--cce---------------------------eeeeEEEEecCCEEEEEEecCC------------c---eeEE
Q 003800 169 TRDFAA--ESV---------------------------EVQQVIQLDESDQIYVVGYAGS------------S---QFHA 204 (794)
Q Consensus 169 ~~~~~~--~~~---------------------------~~~~~v~s~~~~~vyv~~~~g~------------~---~~~v 204 (794)
++.... +.. ....+......+.||+....|. . ...+
T Consensus 198 ~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v 277 (689)
T 1yiq_A 198 RFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSI 277 (689)
T ss_dssp EEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEE
T ss_pred EecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeE
Confidence 997421 100 0001211224678887543320 0 0149
Q ss_pred EEEEcCCCceeeeeeeecc--cC--ccCceEEE----cC---cEEEEEECCCCeEEEEEeeccee
Q 003800 205 YQINAMNGELLNHETAAFS--GG--FVGDVALV----SS---DTLVTLDTTRSILVTVSFKNRKI 258 (794)
Q Consensus 205 ~ald~~tG~~~w~~~v~~~--~~--~s~~~~~v----g~---~~lv~~d~~~g~L~v~~l~sg~~ 258 (794)
+|+|++||+.+|+++.... ++ ....+++. .+ ..++..+ .+|.++++|..+|++
T Consensus 278 ~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~-~~G~l~~lD~~tG~~ 341 (689)
T 1yiq_A 278 VAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAP-KNGFFYVIDRATGEL 341 (689)
T ss_dssp EEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECC-TTSEEEEEETTTCCE
T ss_pred EEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEEC-CCCeEEEEECCCCCE
Confidence 9999999999999864321 12 22233332 12 1455555 579999999999983
No 8
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=99.55 E-value=1.5e-13 Score=163.56 Aligned_cols=220 Identities=15% Similarity=0.168 Sum_probs=141.5
Q ss_pred cccEeeEEeccCceeeeeeeeeccCCCEEEEEeCCCEEEEEECcCCccceEEEcCcccce---------eeeeeeeCCEE
Q 003800 28 VGLMDWHQQYIGKVKHAVFHTQKTGRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVV---------DGIDIALGKYV 98 (794)
Q Consensus 28 vG~~dW~~~~vG~~~~~~f~~~~~~~~~Vyv~t~~g~l~ALn~~tG~ivWR~~l~~~~~i---------~~l~~~~g~~~ 98 (794)
.++..|+.++-+. . .....|...+++||+++.++.|+|||++||+++|++........ ... +...++.
T Consensus 43 ~l~~~W~~~~~~~-~-~~~~~P~v~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 119 (668)
T 1kv9_A 43 SLGLAWYMDLDNT-R-GLEATPLFHDGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRG-VALWGDK 119 (668)
T ss_dssp GEEEEEEEECSCC-S-CCCCCCEEETTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCC-CEEEBTE
T ss_pred CcceEEEEECCCC-C-CcccCCEEECCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccc-eEEECCE
Confidence 3568899987322 1 11223445589999999999999999999999999987654210 111 2345567
Q ss_pred EEEEccCCeEEEEeCCCCcEeEEEeccCcccc---CCccccccccccccCCeEEEEE-------CCEEEEEECCCCcEEE
Q 003800 99 ITLSSDGSTLRAWNLPDGQMVWESFLRGSKHS---KPLLLVPTNLKVDKDSLILVSS-------KGCLHAVSSIDGEILW 168 (794)
Q Consensus 99 V~Vs~~g~~v~A~d~~tG~llWe~~l~~~~~s---~~~~~~~~~~~~~~~~~V~V~~-------~g~l~ald~~tG~~~W 168 (794)
|++++.++.|+|||+.||+++|+......... ...+++ . ++.|++.. +|.|+++|+.||+++|
T Consensus 120 v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v------~-~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W 192 (668)
T 1kv9_A 120 VYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRV------V-KGKVIIGNGGAEYGVRGFVSAYDADTGKLAW 192 (668)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEE------E-TTEEEECCBCTTTCCBCEEEEEETTTCCEEE
T ss_pred EEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEE------E-CCEEEEeCCCCCcCCCCEEEEEECCCCcEEE
Confidence 77777667999999999999999998532110 111222 2 56777753 3899999999999999
Q ss_pred EEecc--Cccee---------------------------eeeEEEEecCCEEEEEEecCC------------c---eeEE
Q 003800 169 TRDFA--AESVE---------------------------VQQVIQLDESDQIYVVGYAGS------------S---QFHA 204 (794)
Q Consensus 169 ~~~~~--~~~~~---------------------------~~~~v~s~~~~~vyv~~~~g~------------~---~~~v 204 (794)
++... .+... ...+......+.+|+....+. . ...+
T Consensus 193 ~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v 272 (668)
T 1kv9_A 193 RFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSI 272 (668)
T ss_dssp EEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEE
T ss_pred EecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeE
Confidence 99752 11100 001111124578887543321 0 1159
Q ss_pred EEEEcCCCceeeeeeeecc--cC--ccCceEEE----cCc---EEEEEECCCCeEEEEEeeccee
Q 003800 205 YQINAMNGELLNHETAAFS--GG--FVGDVALV----SSD---TLVTLDTTRSILVTVSFKNRKI 258 (794)
Q Consensus 205 ~ald~~tG~~~w~~~v~~~--~~--~s~~~~~v----g~~---~lv~~d~~~g~L~v~~l~sg~~ 258 (794)
+|||+.||+.+|+++.... ++ ....+++. .+. .++..+ .+|.++++|..+|++
T Consensus 273 ~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~-~~G~l~~lD~~tG~~ 336 (668)
T 1kv9_A 273 LAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAP-KNGFFYVLDRTNGKL 336 (668)
T ss_dssp EEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECC-TTSEEEEEETTTCCE
T ss_pred EEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEEC-CCCEEEEEECCCCCE
Confidence 9999999999999975421 11 22223322 222 355554 578999999999983
No 9
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.50 E-value=1.6e-14 Score=159.61 Aligned_cols=184 Identities=12% Similarity=0.053 Sum_probs=101.2
Q ss_pred eccCCCEEEEEeCCCEEEEEECcCCccceEEEcCcccceeeeeeeeCCEEEEEEccCCeEEEEeCCCCcEeEEEeccCcc
Q 003800 49 QKTGRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSK 128 (794)
Q Consensus 49 ~~~~~~~Vyv~t~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~l~~~~ 128 (794)
|...+++||+++.+|.|.|+|++||+++|+... .. +...+...++.++++++.++.|++||++||+.+|++....+.
T Consensus 5 P~v~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~~--~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~ 81 (369)
T 2hz6_A 5 VTLPETLLFVSTLDGSLHAVSKRTGSIKWTLKE-DP--VLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPE 81 (369)
T ss_dssp ---CTTEEEEEETTSEEEEEETTTCCEEEEEEC-CC--SCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHH
T ss_pred CeeeCCEEEEEcCCCEEEEEECCCCCEEEEecC-CC--ceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcc
Confidence 555689999999999999999999999999988 22 223322233335554455679999999999999998765322
Q ss_pred ccCCccccccccccccCCeEEEE-ECCEEEEEECCCCcEEEEEeccCcceeeeeEEEEecCCEEEEEEecCCceeEEEEE
Q 003800 129 HSKPLLLVPTNLKVDKDSLILVS-SKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQI 207 (794)
Q Consensus 129 ~s~~~~~~~~~~~~~~~~~V~V~-~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~s~~~~~vyv~~~~g~~~~~v~al 207 (794)
.....+++ ..++.|++. .++.|+++|+.||+++|++...... .. +..++.+|+.+.+| .++++
T Consensus 82 ~~~~sp~~------~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~~----~~--~p~~~~v~~~~~dg----~v~a~ 145 (369)
T 2hz6_A 82 LVQASPCR------SSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAFAD----SL--SPSTSLLYLGRTEY----TITMY 145 (369)
T ss_dssp HHTTCSCC-----------CCCCEEEEEEEEECCC----------------------------EEEEEEEE----EEECC
T ss_pred ccccCceE------ecCCEEEEEeCCCEEEEEECCCCcEEEEecCCCcc----cc--cccCCEEEEEecCC----EEEEE
Confidence 10111221 114556655 4899999999999999998765421 11 12567888766665 89999
Q ss_pred EcCCCceeeeeeeecccCccCceEEEc-----CcEEEEEECCCCeEEEEEeecce
Q 003800 208 NAMNGELLNHETAAFSGGFVGDVALVS-----SDTLVTLDTTRSILVTVSFKNRK 257 (794)
Q Consensus 208 d~~tG~~~w~~~v~~~~~~s~~~~~vg-----~~~lv~~d~~~g~L~v~~l~sg~ 257 (794)
|+.||+.+|+....... .+.+.+ +.+++ .+ .+|.++++|..+|+
T Consensus 146 d~~tG~~~W~~~~~~~~----~~~~~~~~~~~~~v~~-~~-~dg~v~a~d~~tG~ 194 (369)
T 2hz6_A 146 DTKTRELRWNATYFDYA----ASLPEDDVDYKMSHFV-SN-GDGLVVTVDSESGD 194 (369)
T ss_dssp CSSSSSCCCEEEEEEEC----CBCCCCCTTCCCCEEE-EE-TSCEEEEECTTTCC
T ss_pred ECCCCCEEEeEeccccc----CccccCCccccceEEE-EC-CCCEEEEEECCCCc
Confidence 99999999998653321 111112 23333 33 35788888888887
No 10
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=99.48 E-value=4.1e-12 Score=148.96 Aligned_cols=100 Identities=17% Similarity=0.305 Sum_probs=70.5
Q ss_pred ccccEeeEEeccCceee-------eeeeeecc--CCCE----EEEEeCCCEEEEEECcCCccceEEEcCccc---ceeee
Q 003800 27 QVGLMDWHQQYIGKVKH-------AVFHTQKT--GRKR----VVVSTEENVIASLDLRHGEIFWRHVLGIND---VVDGI 90 (794)
Q Consensus 27 qvG~~dW~~~~vG~~~~-------~~f~~~~~--~~~~----Vyv~t~~g~l~ALn~~tG~ivWR~~l~~~~---~i~~l 90 (794)
+.|+..|+++.-..... .....+.. .+++ ||+++.++.|+|||++||+++|++.+.... .+.+.
T Consensus 82 ~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ss 161 (599)
T 1w6s_A 82 DPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIA 161 (599)
T ss_dssp CTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSC
T ss_pred CCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecC
Confidence 68999999987432110 00111333 4556 999999999999999999999999986521 12222
Q ss_pred eeeeCCEEEEEEcc------CCeEEEEeCCCCcEeEEEeccCc
Q 003800 91 DIALGKYVITLSSD------GSTLRAWNLPDGQMVWESFLRGS 127 (794)
Q Consensus 91 ~~~~g~~~V~Vs~~------g~~v~A~d~~tG~llWe~~l~~~ 127 (794)
+ ...++.|+++.. .+.|+|+|+.||+++|++....+
T Consensus 162 P-~v~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~ 203 (599)
T 1w6s_A 162 P-YVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGP 203 (599)
T ss_dssp C-EEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSC
T ss_pred C-EEECCEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCC
Confidence 2 334456777542 47999999999999999997653
No 11
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=99.46 E-value=1.2e-11 Score=144.39 Aligned_cols=190 Identities=17% Similarity=0.206 Sum_probs=118.4
Q ss_pred ccccEeeEEeccCcee-e------eeeeeeccCCCEEEEEeCCCEEEEEECcCCccceEEEcCccc---ceeeeeeeeCC
Q 003800 27 QVGLMDWHQQYIGKVK-H------AVFHTQKTGRKRVVVSTEENVIASLDLRHGEIFWRHVLGIND---VVDGIDIALGK 96 (794)
Q Consensus 27 qvG~~dW~~~~vG~~~-~------~~f~~~~~~~~~Vyv~t~~g~l~ALn~~tG~ivWR~~l~~~~---~i~~l~~~~g~ 96 (794)
+.|+..|++++-.... . ..-..|...+++||+++.++.|+|||++||+++|++.+.... .+... +...+
T Consensus 82 ~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~-P~v~~ 160 (571)
T 2ad6_A 82 DPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQA-PFVAK 160 (571)
T ss_dssp CTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSC-CEEET
T ss_pred CCccEEEEEcCCCCccccccccccccccccEEECCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccC-CEEEC
Confidence 6899999998643211 0 001124456899999999999999999999999999986521 12222 22345
Q ss_pred EEEEEEcc------CCeEEEEeCCCCcEeEEEeccCcccc---CC-----cccc-----------------c-----ccc
Q 003800 97 YVITLSSD------GSTLRAWNLPDGQMVWESFLRGSKHS---KP-----LLLV-----------------P-----TNL 140 (794)
Q Consensus 97 ~~V~Vs~~------g~~v~A~d~~tG~llWe~~l~~~~~s---~~-----~~~~-----------------~-----~~~ 140 (794)
+.|+++.. ++.|+|+|+.||+++|+.....+... .+ .++. + ...
T Consensus 161 g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~ 240 (571)
T 2ad6_A 161 DTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWY 240 (571)
T ss_dssp TEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCC
T ss_pred CEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeE
Confidence 56777653 47999999999999999987643200 00 0000 0 000
Q ss_pred cccc-CCeEEEEEC-----------------CEEEEEECCCCcEEEEEeccCcc-----eeeeeE-EEEecCC---EEEE
Q 003800 141 KVDK-DSLILVSSK-----------------GCLHAVSSIDGEILWTRDFAAES-----VEVQQV-IQLDESD---QIYV 193 (794)
Q Consensus 141 ~~~~-~~~V~V~~~-----------------g~l~ald~~tG~~~W~~~~~~~~-----~~~~~~-v~s~~~~---~vyv 193 (794)
..+. .+.||+..+ +.|+|||++||+++|+++..... .....+ .....++ .+++
T Consensus 241 a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~ 320 (571)
T 2ad6_A 241 AYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLS 320 (571)
T ss_dssp EEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEE
T ss_pred EEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEE
Confidence 1121 356666532 36999999999999999865211 100111 1111244 2333
Q ss_pred EEecCCceeEEEEEEcCCCceeeeeee
Q 003800 194 VGYAGSSQFHAYQINAMNGELLNHETA 220 (794)
Q Consensus 194 ~~~~g~~~~~v~ald~~tG~~~w~~~v 220 (794)
.+...+ .+++||+.||+++|+.++
T Consensus 321 ~~~~~G---~l~~lD~~tG~~~w~~~~ 344 (571)
T 2ad6_A 321 HIDRNG---ILYTLNRENGNLIVAEKV 344 (571)
T ss_dssp EECTTS---EEEEEETTTCCEEEEEES
T ss_pred EeCCCc---EEEEEECCCCCEEeeecc
Confidence 333222 899999999999998764
No 12
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=99.46 E-value=1.6e-11 Score=143.73 Aligned_cols=191 Identities=15% Similarity=0.193 Sum_probs=116.4
Q ss_pred ecccccEeeEEeccCceeee-----eeeeeccCCCEEEEEeCCCEEEEEECcCCccceEEEcCccc---ceeeeeeeeCC
Q 003800 25 EDQVGLMDWHQQYIGKVKHA-----VFHTQKTGRKRVVVSTEENVIASLDLRHGEIFWRHVLGIND---VVDGIDIALGK 96 (794)
Q Consensus 25 edqvG~~dW~~~~vG~~~~~-----~f~~~~~~~~~Vyv~t~~g~l~ALn~~tG~ivWR~~l~~~~---~i~~l~~~~g~ 96 (794)
..+.|+..|++..-...... ....+...+++||+++.++.|+|||++||+++|++.+.... .+.+.+ ...+
T Consensus 84 D~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP-~v~~ 162 (582)
T 1flg_A 84 DAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAP-TIVK 162 (582)
T ss_dssp ESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCC-EEEE
T ss_pred ECCCCcEEEEEcCCCCcccccccccCCCccEEECCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCC-EEeC
Confidence 45689999999874322110 01123445889999999999999999999999999986531 122222 2223
Q ss_pred E------EEEEEcc------CCeEEEEeCCCCcEeEEEeccCcccc------------CCc----------------ccc
Q 003800 97 Y------VITLSSD------GSTLRAWNLPDGQMVWESFLRGSKHS------------KPL----------------LLV 136 (794)
Q Consensus 97 ~------~V~Vs~~------g~~v~A~d~~tG~llWe~~l~~~~~s------------~~~----------------~~~ 136 (794)
+ .|+++.. .+.|+|+|+.||+++|+......... ... ...
T Consensus 163 ~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~ 242 (582)
T 1flg_A 163 DGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSH 242 (582)
T ss_dssp CTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGG
T ss_pred CCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccccccccCCCcccccccccccccc
Confidence 3 7777542 46899999999999998875311000 000 000
Q ss_pred c-----cccccc-cCCeEEEEEC-------------------------CEEEEEECCCCcEEEEEeccCcce----eeee
Q 003800 137 P-----TNLKVD-KDSLILVSSK-------------------------GCLHAVSSIDGEILWTRDFAAESV----EVQQ 181 (794)
Q Consensus 137 ~-----~~~~~~-~~~~V~V~~~-------------------------g~l~ald~~tG~~~W~~~~~~~~~----~~~~ 181 (794)
+ ...+.+ ..+.||+..+ +.|+|||++||+++|+++...... ...+
T Consensus 243 gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~ 322 (582)
T 1flg_A 243 GGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNE 322 (582)
T ss_dssp CBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCC
T ss_pred CCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCC
Confidence 0 000111 1466776541 589999999999999998643210 0011
Q ss_pred -EEEEe--cCC----EEEEEEecCCceeEEEEEEcCCCceeeeeee
Q 003800 182 -VIQLD--ESD----QIYVVGYAGSSQFHAYQINAMNGELLNHETA 220 (794)
Q Consensus 182 -~v~s~--~~~----~vyv~~~~g~~~~~v~ald~~tG~~~w~~~v 220 (794)
++... .++ .+++.+..| .+++||+.||+++|+..+
T Consensus 323 p~l~~~~~~~G~~~~~v~~~~~~G----~l~~lD~~tG~~lw~~~~ 364 (582)
T 1flg_A 323 LVLFDYKAKDGKIVKATAHADRNG----FFYVVDRSNGKLQNAFPF 364 (582)
T ss_dssp CEEEEEECSSSCEEEEEEEECTTS----EEEEEETTTCCEEEEEES
T ss_pred cEEEeeecCCCCEEEEEEEECCCc----eEEEEECCCCCEeccccc
Confidence 11111 133 334333334 899999999999988764
No 13
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.46 E-value=1e-11 Score=148.07 Aligned_cols=102 Identities=15% Similarity=0.167 Sum_probs=72.6
Q ss_pred ecccccEeeEEeccCceee-------eeeeeeccCCCEEEEEeCCCEEEEEECcCCccceEEEcC-cc---cceeeeeee
Q 003800 25 EDQVGLMDWHQQYIGKVKH-------AVFHTQKTGRKRVVVSTEENVIASLDLRHGEIFWRHVLG-IN---DVVDGIDIA 93 (794)
Q Consensus 25 edqvG~~dW~~~~vG~~~~-------~~f~~~~~~~~~Vyv~t~~g~l~ALn~~tG~ivWR~~l~-~~---~~i~~l~~~ 93 (794)
..+.|+..|+++.-..... .....+...+++||+++.++.|+|||++||+++|++.+. .. ..+.+. +.
T Consensus 93 D~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~-p~ 171 (677)
T 1kb0_A 93 DTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGA-PR 171 (677)
T ss_dssp ETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSC-CE
T ss_pred ECCCCcEEEEEcCCCCccccccccccCCCCCceEECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccC-cE
Confidence 4578999999987432210 011124445889999999999999999999999999986 21 112222 23
Q ss_pred eCCEEEEEEcc------CCeEEEEeCCCCcEeEEEeccCc
Q 003800 94 LGKYVITLSSD------GSTLRAWNLPDGQMVWESFLRGS 127 (794)
Q Consensus 94 ~g~~~V~Vs~~------g~~v~A~d~~tG~llWe~~l~~~ 127 (794)
..++.|+++.. ++.|+|||+.||+++|++....+
T Consensus 172 v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~ 211 (677)
T 1kb0_A 172 VFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPG 211 (677)
T ss_dssp EETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCC
T ss_pred EECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCC
Confidence 44556666543 47899999999999999987543
No 14
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.42 E-value=1.2e-11 Score=130.97 Aligned_cols=181 Identities=9% Similarity=0.113 Sum_probs=119.1
Q ss_pred ceeecccccEeeEEeccC--ceeeeeeeeeccCCCEEEEEeCCCEEEEEECcCCccceEEEcCcccceeeeeeeeCCEEE
Q 003800 22 SLYEDQVGLMDWHQQYIG--KVKHAVFHTQKTGRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVI 99 (794)
Q Consensus 22 Al~edqvG~~dW~~~~vG--~~~~~~f~~~~~~~~~Vyv~t~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V 99 (794)
.++..+.|++.|+...-+ .+....+. .++++++ +..+.|.++|+ +|+++|+...+....+.......++.++
T Consensus 18 ~~~d~~tG~~~w~~~~~~~~~~~~~~~~----pdG~ilv-s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG~~l 91 (276)
T 3no2_A 18 AIINKDTKEIVWEYPLEKGWECNSVAAT----KAGEILF-SYSKGAKMITR-DGRELWNIAAPAGCEMQTARILPDGNAL 91 (276)
T ss_dssp EEEETTTTEEEEEEECCTTCCCCEEEEC----TTSCEEE-ECBSEEEEECT-TSCEEEEEECCTTCEEEEEEECTTSCEE
T ss_pred EEEECCCCeEEEEeCCCccCCCcCeEEC----CCCCEEE-eCCCCEEEECC-CCCEEEEEcCCCCccccccEECCCCCEE
Confidence 456677999999998633 12223332 2667777 66888999999 9999999998643233333233344455
Q ss_pred EEEcc-CCeEEEEeCCCCcEeEEEeccCccccCCccccccccccccCCeEEEE--ECCEEEEEECCCCcEEEEEeccCcc
Q 003800 100 TLSSD-GSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVS--SKGCLHAVSSIDGEILWTRDFAAES 176 (794)
Q Consensus 100 ~Vs~~-g~~v~A~d~~tG~llWe~~l~~~~~s~~~~~~~~~~~~~~~~~V~V~--~~g~l~ald~~tG~~~W~~~~~~~~ 176 (794)
+.... .++++++|+ +|+++|+..+............. .....++.+++. .+++|+++|++ |+.+|++..+...
T Consensus 92 v~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~--v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~~~~ 167 (276)
T 3no2_A 92 VAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQ--INKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLSGTP 167 (276)
T ss_dssp EEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSC--CEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECSSCC
T ss_pred EEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccC--ceECCCCCEEEEecCCCEEEEECCC-CCEEEEEECCCCc
Confidence 54333 568999997 99999999876432100000000 012224555554 38999999998 9999999886432
Q ss_pred eeeeeEEEEecCCEEEEEEecCCceeEEEEEEcCCCceeeeee
Q 003800 177 VEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHET 219 (794)
Q Consensus 177 ~~~~~~v~s~~~~~vyv~~~~g~~~~~v~ald~~tG~~~w~~~ 219 (794)
. .+. ...++.+++.+..++ +++++|+.||+.+|+..
T Consensus 168 ~---~~~-~~~~g~~~v~~~~~~---~v~~~d~~tG~~~w~~~ 203 (276)
T 3no2_A 168 F---SSA-FLDNGDCLVACGDAH---CFVQLNLESNRIVRRVN 203 (276)
T ss_dssp C---EEE-ECTTSCEEEECBTTS---EEEEECTTTCCEEEEEE
T ss_pred c---cee-EcCCCCEEEEeCCCC---eEEEEeCcCCcEEEEec
Confidence 2 221 235667776666554 89999999999999996
No 15
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=99.42 E-value=2.7e-11 Score=144.19 Aligned_cols=188 Identities=16% Similarity=0.279 Sum_probs=112.0
Q ss_pred ecccccEeeEEeccCceee-------eeeeeeccCCCEEEEEeCCCEEEEEECcCCccceEEEcCccc---ceeeeeeee
Q 003800 25 EDQVGLMDWHQQYIGKVKH-------AVFHTQKTGRKRVVVSTEENVIASLDLRHGEIFWRHVLGIND---VVDGIDIAL 94 (794)
Q Consensus 25 edqvG~~dW~~~~vG~~~~-------~~f~~~~~~~~~Vyv~t~~g~l~ALn~~tG~ivWR~~l~~~~---~i~~l~~~~ 94 (794)
..+.|+..|++..-..... .....|...+++||+++.+|.|+|||++||+++|++.+.... .+.+. +..
T Consensus 82 D~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~-P~v 160 (668)
T 1kv9_A 82 DAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGA-PRV 160 (668)
T ss_dssp ETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSC-CEE
T ss_pred ECCCChhceEECCCCCccccccccccCCccceEEECCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCC-CEE
Confidence 3578999999976322110 001123445889999999999999999999999999985321 12222 233
Q ss_pred CCEEEEEEcc------CCeEEEEeCCCCcEeEEEeccCccccCC--cc-c------c----------c----cccccc-c
Q 003800 95 GKYVITLSSD------GSTLRAWNLPDGQMVWESFLRGSKHSKP--LL-L------V----------P----TNLKVD-K 144 (794)
Q Consensus 95 g~~~V~Vs~~------g~~v~A~d~~tG~llWe~~l~~~~~s~~--~~-~------~----------~----~~~~~~-~ 144 (794)
.++.|+++.. ++.|+|||+.||+++|++.......... .. + . + .....+ .
T Consensus 161 ~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~ 240 (668)
T 1kv9_A 161 VKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPE 240 (668)
T ss_dssp ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETT
T ss_pred ECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCC
Confidence 4556776543 3689999999999999998642110000 00 0 0 0 000111 1
Q ss_pred CCeEEEEE-CC-------------------EEEEEECCCCcEEEEEeccCcce------eeeeEEEEecCCE----EEEE
Q 003800 145 DSLILVSS-KG-------------------CLHAVSSIDGEILWTRDFAAESV------EVQQVIQLDESDQ----IYVV 194 (794)
Q Consensus 145 ~~~V~V~~-~g-------------------~l~ald~~tG~~~W~~~~~~~~~------~~~~~v~s~~~~~----vyv~ 194 (794)
.+.|++.. ++ .|+|||++||+++|+++...... .+..+.....++. +++.
T Consensus 241 ~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~ 320 (668)
T 1kv9_A 241 LDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQA 320 (668)
T ss_dssp TTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEEC
T ss_pred CCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEE
Confidence 35666653 43 49999999999999998742110 0111111112332 3333
Q ss_pred EecCCceeEEEEEEcCCCceeee
Q 003800 195 GYAGSSQFHAYQINAMNGELLNH 217 (794)
Q Consensus 195 ~~~g~~~~~v~ald~~tG~~~w~ 217 (794)
+..| .+++||..||+++|.
T Consensus 321 ~~~G----~l~~lD~~tG~~l~~ 339 (668)
T 1kv9_A 321 PKNG----FFYVLDRTNGKLISA 339 (668)
T ss_dssp CTTS----EEEEEETTTCCEEEE
T ss_pred CCCC----EEEEEECCCCCEecc
Confidence 3333 778888888887743
No 16
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.39 E-value=2.6e-11 Score=128.35 Aligned_cols=192 Identities=19% Similarity=0.246 Sum_probs=120.2
Q ss_pred CCEEEEEeCCCEEEEEECcCCccceEEEcCcccceeeeeeeeCCEEEEEEccCCeEEEEeCCCCcEeEEEeccCccccCC
Q 003800 53 RKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKP 132 (794)
Q Consensus 53 ~~~Vyv~t~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~l~~~~~s~~ 132 (794)
++.|++++.++.|+++|++||+++|+...+............++.+++ +. ++.|++||+ +|+++|++.........+
T Consensus 5 ~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv-s~-~~~V~~~d~-~G~~~W~~~~~~~~~~~~ 81 (276)
T 3no2_A 5 QHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF-SY-SKGAKMITR-DGRELWNIAAPAGCEMQT 81 (276)
T ss_dssp CEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE-EC-BSEEEEECT-TSCEEEEEECCTTCEEEE
T ss_pred CcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE-eC-CCCEEEECC-CCCEEEEEcCCCCccccc
Confidence 456777888999999999999999999986521122232223444444 65 468999999 999999999752111011
Q ss_pred ccccccccccccCCeEEEE-E--CCEEEEEECCCCcEEEEEeccCcc----eeeeeEEEEecCCEEEEEEecCCceeEEE
Q 003800 133 LLLVPTNLKVDKDSLILVS-S--KGCLHAVSSIDGEILWTRDFAAES----VEVQQVIQLDESDQIYVVGYAGSSQFHAY 205 (794)
Q Consensus 133 ~~~~~~~~~~~~~~~V~V~-~--~g~l~ald~~tG~~~W~~~~~~~~----~~~~~~v~s~~~~~vyv~~~~g~~~~~v~ 205 (794)
.... .++.+++. . +++++++|+ +|+.+|++...... ..+..+. ...++.+++.....+ +|.
T Consensus 82 ~~~~-------~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~-~~~~G~~lv~~~~~~---~v~ 149 (276)
T 3no2_A 82 ARIL-------PDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQIN-KNKKGNYLVPLFATS---EVR 149 (276)
T ss_dssp EEEC-------TTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCE-ECTTSCEEEEETTTT---EEE
T ss_pred cEEC-------CCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCce-ECCCCCEEEEecCCC---EEE
Confidence 1111 24555554 3 578999996 89999999864321 0111121 134555555444333 899
Q ss_pred EEEcCCCceeeeeeeecccCccCceEEEcCcEEEEEECCCCeEEEEEeecceeeeEEEe
Q 003800 206 QINAMNGELLNHETAAFSGGFVGDVALVSSDTLVTLDTTRSILVTVSFKNRKIAFQETH 264 (794)
Q Consensus 206 ald~~tG~~~w~~~v~~~~~~s~~~~~vg~~~lv~~d~~~g~L~v~~l~sg~~~~~~~~ 264 (794)
++|++ |+.+|+.... ....+.+.+.+++++++ +..++.+.++|..+|++ +-++.
T Consensus 150 ~~d~~-G~~~w~~~~~--~~~~~~~~~~~g~~~v~-~~~~~~v~~~d~~tG~~-~w~~~ 203 (276)
T 3no2_A 150 EIAPN-GQLLNSVKLS--GTPFSSAFLDNGDCLVA-CGDAHCFVQLNLESNRI-VRRVN 203 (276)
T ss_dssp EECTT-SCEEEEEECS--SCCCEEEECTTSCEEEE-CBTTSEEEEECTTTCCE-EEEEE
T ss_pred EECCC-CCEEEEEECC--CCccceeEcCCCCEEEE-eCCCCeEEEEeCcCCcE-EEEec
Confidence 99998 9999999653 11222233334455544 34556899999888884 44443
No 17
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.33 E-value=3.9e-13 Score=148.34 Aligned_cols=173 Identities=13% Similarity=0.181 Sum_probs=97.3
Q ss_pred eecccccEeeEEeccCceeeeeeeeeccCCCEEEEE-eCCCEEEEEECcCCccceEEEcCcccceeeeeeeeCCEEEEEE
Q 003800 24 YEDQVGLMDWHQQYIGKVKHAVFHTQKTGRKRVVVS-TEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLS 102 (794)
Q Consensus 24 ~edqvG~~dW~~~~vG~~~~~~f~~~~~~~~~Vyv~-t~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs 102 (794)
+..+.|+..|+.+. +.... .|...++.+|+. +.+|.|+|+|++||+.+|+.....+..+...+....++.++++
T Consensus 24 ~d~~tG~~~W~~~~-~~~~s----~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~~~~~~v~~g 98 (369)
T 2hz6_A 24 VSKRTGSIKWTLKE-DPVLQ----VPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQASPCRSSDGILYMG 98 (369)
T ss_dssp EETTTCCEEEEEEC-CCSCC----CC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTCSCC-----CCCC
T ss_pred EECCCCCEEEEecC-CCcee----cceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccCceEecCCEEEEE
Confidence 45679999999987 54332 232335555555 7899999999999999999866533222222122245677766
Q ss_pred ccCCeEEEEeCCCCcEeEEEeccCccccCCccccccccccccCCeEEEE-ECCEEEEEECCCCcEEEEEeccCcceeeee
Q 003800 103 SDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVS-SKGCLHAVSSIDGEILWTRDFAAESVEVQQ 181 (794)
Q Consensus 103 ~~g~~v~A~d~~tG~llWe~~l~~~~~s~~~~~~~~~~~~~~~~~V~V~-~~g~l~ald~~tG~~~W~~~~~~~~~~~~~ 181 (794)
+.++.+++||+.||+++|+........ ..+ + ++.+++. .++.|+++|+.+|+++|+++..... .
T Consensus 99 ~~dg~v~a~D~~tG~~~w~~~~~~~~~-----~~p-----~-~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~~~----~ 163 (369)
T 2hz6_A 99 KKQDIWYVIDLLTGEKQQTLSSAFADS-----LSP-----S-TSLLYLGRTEYTITMYDTKTRELRWNATYFDYA----A 163 (369)
T ss_dssp EEEEEEEEECCC---------------------------------EEEEEEEEEEECCCSSSSSCCCEEEEEEEC----C
T ss_pred eCCCEEEEEECCCCcEEEEecCCCccc-----ccc-----c-CCEEEEEecCCEEEEEECCCCCEEEeEeccccc----C
Confidence 656789999999999999988654211 111 1 5667666 4899999999999999998653211 1
Q ss_pred EEEEecC-----CEEEEEEecCCceeEEEEEEcCCCceeeeeeeec
Q 003800 182 VIQLDES-----DQIYVVGYAGSSQFHAYQINAMNGELLNHETAAF 222 (794)
Q Consensus 182 ~v~s~~~-----~~vyv~~~~g~~~~~v~ald~~tG~~~w~~~v~~ 222 (794)
. ...+ +.+|+.+.+| .++|+|+.||+.+|+..+..
T Consensus 164 ~--~~~~~~~~~~~v~~~~~dg----~v~a~d~~tG~~~W~~~~~~ 203 (369)
T 2hz6_A 164 S--LPEDDVDYKMSHFVSNGDG----LVVTVDSESGDVLWIQNYAS 203 (369)
T ss_dssp B--CCCCCTTCCCCEEEEETSC----EEEEECTTTCCEEEEEECSS
T ss_pred c--cccCCccccceEEEECCCC----EEEEEECCCCcEEEEecCCC
Confidence 1 1122 6788766565 89999999999999997543
No 18
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.33 E-value=3.2e-11 Score=143.99 Aligned_cols=191 Identities=16% Similarity=0.256 Sum_probs=116.7
Q ss_pred ecccccEeeEEeccCceee-------eeeeeeccCCCEEEEEeCCCEEEEEECcCCccceEEEcC-ccc---ceeeeeee
Q 003800 25 EDQVGLMDWHQQYIGKVKH-------AVFHTQKTGRKRVVVSTEENVIASLDLRHGEIFWRHVLG-IND---VVDGIDIA 93 (794)
Q Consensus 25 edqvG~~dW~~~~vG~~~~-------~~f~~~~~~~~~Vyv~t~~g~l~ALn~~tG~ivWR~~l~-~~~---~i~~l~~~ 93 (794)
..+.|+..|++..-..... .....|...+++||+++.+|.|+|||++||+++|++... ... .+.+.+ .
T Consensus 86 D~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP-~ 164 (689)
T 1yiq_A 86 DARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAP-R 164 (689)
T ss_dssp ETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCC-E
T ss_pred ECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCc-E
Confidence 4568999999976321110 001124445889999999999999999999999999885 221 122222 3
Q ss_pred eCCEEEEEEcc------CCeEEEEeCCCCcEeEEEeccCccccCC---ccc----------------cc----ccccccc
Q 003800 94 LGKYVITLSSD------GSTLRAWNLPDGQMVWESFLRGSKHSKP---LLL----------------VP----TNLKVDK 144 (794)
Q Consensus 94 ~g~~~V~Vs~~------g~~v~A~d~~tG~llWe~~l~~~~~s~~---~~~----------------~~----~~~~~~~ 144 (794)
..++.|+++.. ++.|+|||+.||+++|++.......... ..+ -+ .....+.
T Consensus 165 v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~ 244 (689)
T 1yiq_A 165 VVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDP 244 (689)
T ss_dssp EETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEET
T ss_pred EECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcC
Confidence 34556666542 3689999999999999998532100000 000 00 0001121
Q ss_pred -CCeEEEEE-CC-------------------EEEEEECCCCcEEEEEeccCcc-----e-eeeeEEEEecCC----EEEE
Q 003800 145 -DSLILVSS-KG-------------------CLHAVSSIDGEILWTRDFAAES-----V-EVQQVIQLDESD----QIYV 193 (794)
Q Consensus 145 -~~~V~V~~-~g-------------------~l~ald~~tG~~~W~~~~~~~~-----~-~~~~~v~s~~~~----~vyv 193 (794)
.+.|++.. ++ .|+|+|++||+++|+++..... . .+..+.+...++ .+++
T Consensus 245 ~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~ 324 (689)
T 1yiq_A 245 ELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQ 324 (689)
T ss_dssp TTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEE
T ss_pred CCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEE
Confidence 45666653 43 4999999999999999864221 1 011111111233 3444
Q ss_pred EEecCCceeEEEEEEcCCCceeeeeee
Q 003800 194 VGYAGSSQFHAYQINAMNGELLNHETA 220 (794)
Q Consensus 194 ~~~~g~~~~~v~ald~~tG~~~w~~~v 220 (794)
.+..| .+++||+.||+++|...+
T Consensus 325 ~~~~G----~l~~lD~~tG~~l~~~~~ 347 (689)
T 1yiq_A 325 APKNG----FFYVIDRATGELLSAKGI 347 (689)
T ss_dssp CCTTS----EEEEEETTTCCEEEEEES
T ss_pred ECCCC----eEEEEECCCCCEeccccc
Confidence 33334 899999999999998754
No 19
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=99.32 E-value=1.2e-11 Score=134.42 Aligned_cols=196 Identities=11% Similarity=0.060 Sum_probs=116.3
Q ss_pred CCEEEEEeCCCEEEEEECcCCccceEEEcCcccceeeee---eeeCCEEEEEE-ccCCeEEEEeCCCCcEeEEEeccCcc
Q 003800 53 RKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGID---IALGKYVITLS-SDGSTLRAWNLPDGQMVWESFLRGSK 128 (794)
Q Consensus 53 ~~~Vyv~t~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~---~~~g~~~V~Vs-~~g~~v~A~d~~tG~llWe~~l~~~~ 128 (794)
++.||++|.+|.|+|||++||+++|+...+........+ ...++.++++. ..++.|+|+|+.+|..+|...+....
T Consensus 10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv 89 (339)
T 2be1_A 10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLV 89 (339)
T ss_dssp EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHH
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccce
Confidence 568999999999999999999999999886110111110 01234555553 34679999999999999988876433
Q ss_pred ccCCcccccc-cccc------ccCCeEEEE-ECCEEEEEECCCCcEEEEEeccCcce----eeeeEE---EE---ecCCE
Q 003800 129 HSKPLLLVPT-NLKV------DKDSLILVS-SKGCLHAVSSIDGEILWTRDFAAESV----EVQQVI---QL---DESDQ 190 (794)
Q Consensus 129 ~s~~~~~~~~-~~~~------~~~~~V~V~-~~g~l~ald~~tG~~~W~~~~~~~~~----~~~~~v---~s---~~~~~ 190 (794)
. ..++... ...+ ..++.||+. .+|+++|+|+.||+++|++....+.- ....|. +. ..++.
T Consensus 90 ~--~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~ 167 (339)
T 2be1_A 90 S--TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENM 167 (339)
T ss_dssp T--TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCE
T ss_pred e--ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCe
Confidence 2 1112200 0011 036677776 59999999999999999998764321 001111 00 13467
Q ss_pred EEEEEecCCceeEEEEEEcCCCceeeeeeeecccC--ccC----ceEEEcCcEEEEEECCCCeEEEEEeecce
Q 003800 191 IYVVGYAGSSQFHAYQINAMNGELLNHETAAFSGG--FVG----DVALVSSDTLVTLDTTRSILVTVSFKNRK 257 (794)
Q Consensus 191 vyv~~~~g~~~~~v~ald~~tG~~~w~~~v~~~~~--~s~----~~~~vg~~~lv~~d~~~g~L~v~~l~sg~ 257 (794)
+|+..... .+++.+ ++|+ +|....+.-.. +.+ ...+..++.+++.+ .+|.++++|..+|.
T Consensus 168 v~ig~~~y----~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~~~~~-~dg~v~A~d~~~G~ 233 (339)
T 2be1_A 168 IVIGKTIF----ELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMCIAPF-RDKSLLASDLDFRI 233 (339)
T ss_dssp EEEEEEEE----ECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCCEEEE-TTTEEEEECSTTCC
T ss_pred EEEecceE----EEEEEC-CCCC-eEEEecccccccccccccccccccccCCcEEEEC-CCCEEEEEECCCCc
Confidence 77755443 566667 7898 89987643211 110 00001112222333 35777777777776
No 20
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.19 E-value=3.4e-08 Score=105.40 Aligned_cols=223 Identities=13% Similarity=0.120 Sum_probs=139.0
Q ss_pred EeeEEeccCceeeeeeeeeccCCCEEEEEeC-------CCEEEEEECcCCccceEEEcCcccceeeeeeeeCCEEEEE-E
Q 003800 31 MDWHQQYIGKVKHAVFHTQKTGRKRVVVSTE-------ENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITL-S 102 (794)
Q Consensus 31 ~dW~~~~vG~~~~~~f~~~~~~~~~Vyv~t~-------~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~V-s 102 (794)
..++.+.-+.+....|. .+++++|+++. ++.|..+|+++|+++|+...... ..++....++..+++ +
T Consensus 33 ~~~~~~~~~~~~~~~~s---~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~--~~~~~~s~dg~~l~v~~ 107 (353)
T 3vgz_A 33 EMLRKAVGKGAYEMAYS---QQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLK--PFGATINNTTQTLWFGN 107 (353)
T ss_dssp CEEEEEEESSEEEEEEE---TTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSC--CCSEEEETTTTEEEEEE
T ss_pred hhhhhhhccCccceEEC---CCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCC--cceEEECCCCCEEEEEe
Confidence 35666665555544454 34678999884 56899999999999999887544 223322334444544 4
Q ss_pred ccCCeEEEEeCCCCcEeEEEeccCcccc-CCcccccccccccc-CCeEEEEE---CCEEEEEECCCCcEEEEEeccCcce
Q 003800 103 SDGSTLRAWNLPDGQMVWESFLRGSKHS-KPLLLVPTNLKVDK-DSLILVSS---KGCLHAVSSIDGEILWTRDFAAESV 177 (794)
Q Consensus 103 ~~g~~v~A~d~~tG~llWe~~l~~~~~s-~~~~~~~~~~~~~~-~~~V~V~~---~g~l~ald~~tG~~~W~~~~~~~~~ 177 (794)
..++.|+.||..+|+.+|.......... ...+..+....... ++.+++.. ++.++.+|..+|+..+........
T Consensus 108 ~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~- 186 (353)
T 3vgz_A 108 TVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKM- 186 (353)
T ss_dssp TTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTT-
T ss_pred cCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCc-
Confidence 4467999999999999999987542210 00000000001221 35567654 788999999999999998733221
Q ss_pred eeeeEEEEecCCEEEEEEecCCceeEEEEEEcCCCceeeeeeeecccCcc--CceEEE-cCcEEEEEECCCCeEEEEEee
Q 003800 178 EVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAFSGGFV--GDVALV-SSDTLVTLDTTRSILVTVSFK 254 (794)
Q Consensus 178 ~~~~~v~s~~~~~vyv~~~~g~~~~~v~ald~~tG~~~w~~~v~~~~~~s--~~~~~v-g~~~lv~~d~~~g~L~v~~l~ 254 (794)
+..+..+.++..+|+.+..+ .+..+|+.+|+.++........... ..+.+- .++.+++.+...+.+++.|+.
T Consensus 187 -~~~~~~s~dg~~l~~~~~~~----~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~ 261 (353)
T 3vgz_A 187 -STGLALDSEGKRLYTTNADG----ELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTR 261 (353)
T ss_dssp -CCCCEEETTTTEEEEECTTS----EEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETT
T ss_pred -cceEEECCCCCEEEEEcCCC----eEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECC
Confidence 22232234566788765444 7889999999999887653221111 112222 345666777667899999999
Q ss_pred cceeeeEEEee
Q 003800 255 NRKIAFQETHL 265 (794)
Q Consensus 255 sg~~~~~~~~l 265 (794)
+++. .+.+++
T Consensus 262 ~~~~-~~~~~~ 271 (353)
T 3vgz_A 262 NGNI-LAKVAA 271 (353)
T ss_dssp TCCE-EEEEEC
T ss_pred CCcE-EEEEEc
Confidence 8873 444443
No 21
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=99.07 E-value=3.4e-10 Score=123.09 Aligned_cols=190 Identities=8% Similarity=-0.004 Sum_probs=111.8
Q ss_pred cccccEeeEEeccC-ceeeeeeeeec-cCCCEEEEE--eCCCEEEEEECcCCccceEEEcCcccceeee----eeee---
Q 003800 26 DQVGLMDWHQQYIG-KVKHAVFHTQK-TGRKRVVVS--TEENVIASLDLRHGEIFWRHVLGINDVVDGI----DIAL--- 94 (794)
Q Consensus 26 dqvG~~dW~~~~vG-~~~~~~f~~~~-~~~~~Vyv~--t~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l----~~~~--- 94 (794)
.+.|+..|+.+.-. .|... ...+. ..++.+|+. +.+|.|+|+|+++|...|+..++.-.....+ .+..
T Consensus 27 ~~tG~~~W~~~~~~~~p~~~-~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~~SP~~~~~~pvv~~~ 105 (339)
T 2be1_A 27 RRNGHIIWSIEPENFQPLIE-IQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVSTSPLHLKTNIVVNDS 105 (339)
T ss_dssp TTTTEEEEEECGGGSCCSEE-CCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHTTCSEEEECC------
T ss_pred CCCCcEEEEecCCccCCcEE-ecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccceeccccccCCCceeecc
Confidence 46899999998731 11111 11111 125567776 6899999999999999998887543111111 1123
Q ss_pred ----CCEEEEEEccCCeEEEEeCCCCcEeEEEeccCccc--cCCcccccccccc---ccCCeEEEE-ECCEEEEEECCCC
Q 003800 95 ----GKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKH--SKPLLLVPTNLKV---DKDSLILVS-SKGCLHAVSSIDG 164 (794)
Q Consensus 95 ----g~~~V~Vs~~g~~v~A~d~~tG~llWe~~l~~~~~--s~~~~~~~~~~~~---~~~~~V~V~-~~g~l~ald~~tG 164 (794)
.++.|++++.+++++|+|+.||+++|++....+.. ......++..... +.++.|++. ....+++++ .+|
T Consensus 106 ~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~ig~~~y~v~~~~-~sG 184 (339)
T 2be1_A 106 GKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIVIGKTIFELGIHS-YDG 184 (339)
T ss_dssp ----CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEEEEEEEEECEECC-TTS
T ss_pred cccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEEEecceEEEEEEC-CCC
Confidence 78889988877899999999999999999764321 0000111100000 223556665 466777777 679
Q ss_pred cEEEEEeccCcce-eeee-EE---EEecCCEEEEEEecCCceeEEEEEEcCCCceee-eeeeec
Q 003800 165 EILWTRDFAAESV-EVQQ-VI---QLDESDQIYVVGYAGSSQFHAYQINAMNGELLN-HETAAF 222 (794)
Q Consensus 165 ~~~W~~~~~~~~~-~~~~-~v---~s~~~~~vyv~~~~g~~~~~v~ald~~tG~~~w-~~~v~~ 222 (794)
+ +|..+...-.- .... +. ....++.+|+...+| +++|+|+.+|+.+| +.++..
T Consensus 185 ~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~~~~~~dg----~v~A~d~~~G~~~W~~~~l~s 243 (339)
T 2be1_A 185 A-SYNVTYSTWQQNVLDVPLALQNTFSKDGMCIAPFRDK----SLLASDLDFRIARWVSPTFPG 243 (339)
T ss_dssp C-CCCCEEEEEECCTTTHHHHTTCSSCSSSCCEEEETTT----EEEEECSTTCCEEEECCCCSS
T ss_pred C-eEEEecccccccccccccccccccccCCcEEEECCCC----EEEEEECCCCcEEEEeecCCC
Confidence 8 89865431100 0000 00 001235666655555 89999999999999 775433
No 22
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.04 E-value=8.3e-09 Score=109.57 Aligned_cols=202 Identities=18% Similarity=0.184 Sum_probs=128.9
Q ss_pred cccccEeeEEeccCceeeeeeeeeccCCCEEEEEeCCCEEEEEECcCCccceEEEcCcccceeeeeeeeCCEEEEEEccC
Q 003800 26 DQVGLMDWHQQYIGKVKHAVFHTQKTGRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDG 105 (794)
Q Consensus 26 dqvG~~dW~~~~vG~~~~~~f~~~~~~~~~Vyv~t~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~~g 105 (794)
|..|+..|+...-+... ..+...++.||+++.++.|+++|++ |+..|+....... +..+ ....++.+++++.+
T Consensus 84 d~~g~~~~~~~~~~~~~----~~~~~~~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~-~~~~-~~~~~g~l~vgt~~ 156 (330)
T 3hxj_A 84 NPDGTEKWRFDTKKAIV----SDFTIFEDILYVTSMDGHLYAINTD-GTEKWRFKTKKAI-YATP-IVSEDGTIYVGSND 156 (330)
T ss_dssp CCCGGGGGGSCC---------CCEEEETTEEEEECTTSEEEEECTT-SCEEEEEECSSCC-CSCC-EECTTSCEEEECTT
T ss_pred CCCCcEEEEEECCCCcc----cCceEECCEEEEEecCCEEEEEcCC-CCEEEEEcCCCce-eeee-EEcCCCEEEEEcCC
Confidence 34566667655422211 1122237889999999999999999 9999999875441 2222 23435667777766
Q ss_pred CeEEEEeCCCCcEeEEEeccCccccCCccccccccccccCCeEEEEECCEEEEEECCCCcEEEEEeccCcceeeeeEEEE
Q 003800 106 STLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSSKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQL 185 (794)
Q Consensus 106 ~~v~A~d~~tG~llWe~~l~~~~~s~~~~~~~~~~~~~~~~~V~V~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~s 185 (794)
+.++++|+. |+++|+........ .. + ..+.++.+++.+ +.|+++| .+|+.+|+...+.... ..+. .
T Consensus 157 ~~l~~~d~~-g~~~~~~~~~~~~~-~~-~------~~d~~g~l~v~t-~~l~~~d-~~g~~~~~~~~~~~~~--~~~~-~ 222 (330)
T 3hxj_A 157 NYLYAINPD-GTEKWRFKTNDAIT-SA-A------SIGKDGTIYFGS-DKVYAIN-PDGTEKWNFYAGYWTV--TRPA-I 222 (330)
T ss_dssp SEEEEECTT-SCEEEEEECSSCCC-SC-C------EECTTCCEEEES-SSEEEEC-TTSCEEEEECCSSCCC--SCCE-E
T ss_pred CEEEEECCC-CCEeEEEecCCCce-ee-e------EEcCCCEEEEEe-CEEEEEC-CCCcEEEEEccCCcce--eceE-E
Confidence 789999998 99999998765432 11 1 233366788877 8999999 8999999988654322 1222 2
Q ss_pred ecCCEEEEEEecCCceeEEEEEEcCCCceeeeeeeecccCccCceEEEcCcEEEEEECCCCeEEEEEeecce
Q 003800 186 DESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAFSGGFVGDVALVSSDTLVTLDTTRSILVTVSFKNRK 257 (794)
Q Consensus 186 ~~~~~vyv~~~~g~~~~~v~ald~~tG~~~w~~~v~~~~~~s~~~~~vg~~~lv~~d~~~g~L~v~~l~sg~ 257 (794)
..++.+|+.+..+ .++++| .+|+.+|+.... ......+++..++.+.+.+ ..|.|+.++. +|+
T Consensus 223 ~~~g~l~v~t~~~----gl~~~~-~~g~~~~~~~~~--~~~~~~~~~~~~g~l~v~t-~~ggl~~~d~-~g~ 285 (330)
T 3hxj_A 223 SEDGTIYVTSLDG----HLYAIN-PDGTEKWRFKTG--KRIESSPVIGNTDTIYFGS-YDGHLYAINP-DGT 285 (330)
T ss_dssp CTTSCEEEEETTT----EEEEEC-TTSCEEEEEECS--SCCCSCCEECTTSCEEEEC-TTCEEEEECT-TSC
T ss_pred CCCCeEEEEcCCC----eEEEEC-CCCCEeEEeeCC--CCccccceEcCCCeEEEec-CCCCEEEECC-CCc
Confidence 3456899866555 689997 489999988532 2222334433233333332 3567888885 555
No 23
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.99 E-value=2.7e-08 Score=105.54 Aligned_cols=168 Identities=21% Similarity=0.322 Sum_probs=117.3
Q ss_pred ecccccEeeEEeccCceeeeeeeeeccC-CCEEEEEeCCCEEEEEECcCCccceEEEcCcccceeeeeeeeCCEEEEEEc
Q 003800 25 EDQVGLMDWHQQYIGKVKHAVFHTQKTG-RKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSS 103 (794)
Q Consensus 25 edqvG~~dW~~~~vG~~~~~~f~~~~~~-~~~Vyv~t~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~ 103 (794)
..+ |+..|+...-+.. ...+..+ ++.||+++.++.|+++|++ |+++|+..++... +..+ ....++.+++++
T Consensus 123 d~~-g~~~~~~~~~~~~----~~~~~~~~~g~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~-~~~~-~~d~~g~l~v~t 194 (330)
T 3hxj_A 123 NTD-GTEKWRFKTKKAI----YATPIVSEDGTIYVGSNDNYLYAINPD-GTEKWRFKTNDAI-TSAA-SIGKDGTIYFGS 194 (330)
T ss_dssp CTT-SCEEEEEECSSCC----CSCCEECTTSCEEEECTTSEEEEECTT-SCEEEEEECSSCC-CSCC-EECTTCCEEEES
T ss_pred cCC-CCEEEEEcCCCce----eeeeEEcCCCEEEEEcCCCEEEEECCC-CCEeEEEecCCCc-eeee-EEcCCCEEEEEe
Confidence 344 8888988753221 1112222 7789999999999999999 9999999876542 2222 233566677777
Q ss_pred cCCeEEEEeCCCCcEeEEEeccCccccCCccccccccccccCCeEEEEE-CCEEEEEECCCCcEEEEEeccCcceeeeeE
Q 003800 104 DGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSS-KGCLHAVSSIDGEILWTRDFAAESVEVQQV 182 (794)
Q Consensus 104 ~g~~v~A~d~~tG~llWe~~l~~~~~s~~~~~~~~~~~~~~~~~V~V~~-~g~l~ald~~tG~~~W~~~~~~~~~~~~~~ 182 (794)
+.++++| .+|+.+|+........ ..+ ..+.++.+++.+ ++.|+++| .+|+..|.+....... ..+
T Consensus 195 --~~l~~~d-~~g~~~~~~~~~~~~~-~~~-------~~~~~g~l~v~t~~~gl~~~~-~~g~~~~~~~~~~~~~--~~~ 260 (330)
T 3hxj_A 195 --DKVYAIN-PDGTEKWNFYAGYWTV-TRP-------AISEDGTIYVTSLDGHLYAIN-PDGTEKWRFKTGKRIE--SSP 260 (330)
T ss_dssp --SSEEEEC-TTSCEEEEECCSSCCC-SCC-------EECTTSCEEEEETTTEEEEEC-TTSCEEEEEECSSCCC--SCC
T ss_pred --CEEEEEC-CCCcEEEEEccCCcce-ece-------EECCCCeEEEEcCCCeEEEEC-CCCCEeEEeeCCCCcc--ccc
Confidence 5799999 8999999998764332 111 233356788876 79999997 5899999998754322 112
Q ss_pred EEEecCCEEEEEEecCCceeEEEEEEcCCCceeeeeee
Q 003800 183 IQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETA 220 (794)
Q Consensus 183 v~s~~~~~vyv~~~~g~~~~~v~ald~~tG~~~w~~~v 220 (794)
+ ...++.+|+.+..| .++++|+ +|+.+|...+
T Consensus 261 ~-~~~~g~l~v~t~~g----gl~~~d~-~g~~~~~~~~ 292 (330)
T 3hxj_A 261 V-IGNTDTIYFGSYDG----HLYAINP-DGTEKWNFET 292 (330)
T ss_dssp E-ECTTSCEEEECTTC----EEEEECT-TSCEEEEEEC
T ss_pred e-EcCCCeEEEecCCC----CEEEECC-CCcEEEEEEc
Confidence 2 13478899876665 6999997 8999999864
No 24
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=98.92 E-value=1.1e-06 Score=93.40 Aligned_cols=192 Identities=13% Similarity=0.128 Sum_probs=127.8
Q ss_pred CCCEEEEEeC-CCEEEEEECcCCccceEEEcCcccc--------eeeeeeeeCCEEEEEEc--cCCeEEEEeCCCCcEeE
Q 003800 52 GRKRVVVSTE-ENVIASLDLRHGEIFWRHVLGINDV--------VDGIDIALGKYVITLSS--DGSTLRAWNLPDGQMVW 120 (794)
Q Consensus 52 ~~~~Vyv~t~-~g~l~ALn~~tG~ivWR~~l~~~~~--------i~~l~~~~g~~~V~Vs~--~g~~v~A~d~~tG~llW 120 (794)
+++.+|+++. ++.|..+|+++|+++|+..+..... ..++.....++.+++++ .++.|+.||..+|+..+
T Consensus 99 dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~ 178 (353)
T 3vgz_A 99 TTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKT 178 (353)
T ss_dssp TTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEE
T ss_pred CCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEE
Confidence 4566888776 6899999999999999998854321 22332233444555554 35789999999999999
Q ss_pred EEeccCccccCCccccccccccccCCeEEEE-ECCEEEEEECCCCcEEEEEeccCc--ceeeeeEEEEecCCEEEEEEec
Q 003800 121 ESFLRGSKHSKPLLLVPTNLKVDKDSLILVS-SKGCLHAVSSIDGEILWTRDFAAE--SVEVQQVIQLDESDQIYVVGYA 197 (794)
Q Consensus 121 e~~l~~~~~s~~~~~~~~~~~~~~~~~V~V~-~~g~l~ald~~tG~~~W~~~~~~~--~~~~~~~v~s~~~~~vyv~~~~ 197 (794)
.....+... ..+.+. .+ ++.+++. .++.++.+|..+|+..|....+.. ...+..+..+.+++.+|+.+..
T Consensus 179 ~~~~~~~~~-~~~~~s-----~d-g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~ 251 (353)
T 3vgz_A 179 AIQNTGKMS-TGLALD-----SE-GKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSK 251 (353)
T ss_dssp EECCCCTTC-CCCEEE-----TT-TTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESS
T ss_pred EecCCCCcc-ceEEEC-----CC-CCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCC
Confidence 987433211 122121 12 3556666 488999999999999999877332 1113334333456678876644
Q ss_pred CCceeEEEEEEcCCCceeeeeeeecccCccCceEEE-cCcEEEEEECCCCeEEEEEeecce
Q 003800 198 GSSQFHAYQINAMNGELLNHETAAFSGGFVGDVALV-SSDTLVTLDTTRSILVTVSFKNRK 257 (794)
Q Consensus 198 g~~~~~v~ald~~tG~~~w~~~v~~~~~~s~~~~~v-g~~~lv~~d~~~g~L~v~~l~sg~ 257 (794)
++ .+..+|+.+|+.++......+ ..+.+- .++.+++.+...+.+.+.|+.+++
T Consensus 252 ~~---~v~~~d~~~~~~~~~~~~~~~----~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~ 305 (353)
T 3vgz_A 252 AA---EVLVVDTRNGNILAKVAAPES----LAVLFNPARNEAYVTHRQAGKVSVIDAKSYK 305 (353)
T ss_dssp SS---EEEEEETTTCCEEEEEECSSC----CCEEEETTTTEEEEEETTTTEEEEEETTTTE
T ss_pred CC---EEEEEECCCCcEEEEEEcCCC----ceEEECCCCCEEEEEECCCCeEEEEECCCCe
Confidence 33 799999999999887764332 123332 345566677667899999998887
No 25
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=98.73 E-value=2.1e-06 Score=92.46 Aligned_cols=172 Identities=9% Similarity=-0.047 Sum_probs=114.9
Q ss_pred ceeecccccEeeEEeccCceeeeeeeeeccCCCEEEEEe-CCCEEEEEECcCCccceEEEcCccc----ceeeeeeeeCC
Q 003800 22 SLYEDQVGLMDWHQQYIGKVKHAVFHTQKTGRKRVVVST-EENVIASLDLRHGEIFWRHVLGIND----VVDGIDIALGK 96 (794)
Q Consensus 22 Al~edqvG~~dW~~~~vG~~~~~~f~~~~~~~~~Vyv~t-~~g~l~ALn~~tG~ivWR~~l~~~~----~i~~l~~~~g~ 96 (794)
.++..+.++...+....+.|....+. .++++|+++ .++.|..+|++||++.++..+.... ...++.. .+
T Consensus 67 ~viD~~t~~~~~~i~~~~~p~~i~~~----~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~ 140 (328)
T 3dsm_A 67 FAIDINTFKEVGRITGFTSPRYIHFL----SDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YG 140 (328)
T ss_dssp EEEETTTCCEEEEEECCSSEEEEEEE----ETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ET
T ss_pred EEEECcccEEEEEcCCCCCCcEEEEe----CCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--EC
Confidence 34455567766665544445443442 256999999 7899999999999999998876511 1224422 44
Q ss_pred EEEEEEc--cCCeEEEEeCCCCcEeEEEeccCccccCCccccccccccccCCeEEEEE--C----------CEEEEEECC
Q 003800 97 YVITLSS--DGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSS--K----------GCLHAVSSI 162 (794)
Q Consensus 97 ~~V~Vs~--~g~~v~A~d~~tG~llWe~~l~~~~~s~~~~~~~~~~~~~~~~~V~V~~--~----------g~l~ald~~ 162 (794)
+.++|+. .++.|..+|+++|+++++........ .+ ..+.++.+++.. + +.|+.+|.+
T Consensus 141 ~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p~--~i-------~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~ 211 (328)
T 3dsm_A 141 KYVYVNCWSYQNRILKIDTETDKVVDELTIGIQPT--SL-------VMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAE 211 (328)
T ss_dssp TEEEEEECTTCCEEEEEETTTTEEEEEEECSSCBC--CC-------EECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETT
T ss_pred CEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCcc--ce-------EEcCCCCEEEEECCCccCCccccCCceEEEEECC
Confidence 5566654 36799999999999999987643221 11 223356777764 2 689999999
Q ss_pred CCcEEEEEeccCcceeeeeEEEEecCCEEEEEEecCCceeEEEEEEcCCCcee
Q 003800 163 DGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELL 215 (794)
Q Consensus 163 tG~~~W~~~~~~~~~~~~~~v~s~~~~~vyv~~~~g~~~~~v~ald~~tG~~~ 215 (794)
+|++..+...+... .|..+..+.+++.+|+.. + .++.+|+.+|+..
T Consensus 212 t~~v~~~~~~~~g~-~p~~la~~~d~~~lyv~~--~----~v~~~d~~t~~~~ 257 (328)
T 3dsm_A 212 TFTVEKQFKFKLGD-WPSEVQLNGTRDTLYWIN--N----DIWRMPVEADRVP 257 (328)
T ss_dssp TTEEEEEEECCTTC-CCEEEEECTTSCEEEEES--S----SEEEEETTCSSCC
T ss_pred CCeEEEEEecCCCC-CceeEEEecCCCEEEEEc--c----EEEEEECCCCcee
Confidence 99998887765332 144443233467788743 2 5889999999875
No 26
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=98.61 E-value=6.2e-06 Score=88.66 Aligned_cols=189 Identities=9% Similarity=0.013 Sum_probs=121.8
Q ss_pred CCEEEEEeC-CCEEEEEECcCCccceEEEcCcccceeeeeeeeCCEEEEEEc-cCCeEEEEeCCCCcEeEEEeccCcccc
Q 003800 53 RKRVVVSTE-ENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSS-DGSTLRAWNLPDGQMVWESFLRGSKHS 130 (794)
Q Consensus 53 ~~~Vyv~t~-~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~-~g~~v~A~d~~tG~llWe~~l~~~~~s 130 (794)
++++|+++. .|.|..+|++||+++++..... ...++....++ .++++. .++.|..||+.+|++.++.........
T Consensus 53 ~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~~--~p~~i~~~~~g-~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~ 129 (328)
T 3dsm_A 53 DGIGWIVVNNSHVIFAIDINTFKEVGRITGFT--SPRYIHFLSDE-KAYVTQIWDYRIFIINPKTYEITGYIECPDMDME 129 (328)
T ss_dssp TTEEEEEEGGGTEEEEEETTTCCEEEEEECCS--SEEEEEEEETT-EEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTT
T ss_pred CCEEEEEEcCCCEEEEEECcccEEEEEcCCCC--CCcEEEEeCCC-eEEEEECCCCeEEEEECCCCeEEEEEEcCCcccc
Confidence 788998887 5899999999999999874322 23344222344 677766 568999999999999999887541100
Q ss_pred -CCccccccccccccCCeEEEEE---CCEEEEEECCCCcEEEEEeccCcceeeeeEEEEecCCEEEEEEecCCc------
Q 003800 131 -KPLLLVPTNLKVDKDSLILVSS---KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSS------ 200 (794)
Q Consensus 131 -~~~~~~~~~~~~~~~~~V~V~~---~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~s~~~~~vyv~~~~g~~------ 200 (794)
..+.-+ ..+ ++.++|.. ++.|..+|..+|++.++...... |..+. ...++.+|+++.....
T Consensus 130 ~~~p~~i----~~~-~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~---p~~i~-~~~dG~l~v~~~~~~~~~~~~~ 200 (328)
T 3dsm_A 130 SGSTEQM----VQY-GKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQ---PTSLV-MDKYNKMWTITDGGYEGSPYGY 200 (328)
T ss_dssp TCBCCCE----EEE-TTEEEEEECTTCCEEEEEETTTTEEEEEEECSSC---BCCCE-ECTTSEEEEEBCCBCTTCSSCB
T ss_pred CCCcceE----EEE-CCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCC---ccceE-EcCCCCEEEEECCCccCCcccc
Confidence 000111 222 67888873 68999999999999998876432 33333 2356788876543200
Q ss_pred -eeEEEEEEcCCCceeeeeeeecccCccCceEEE-cCcEEEEEECCCCeEEEEEeecce
Q 003800 201 -QFHAYQINAMNGELLNHETAAFSGGFVGDVALV-SSDTLVTLDTTRSILVTVSFKNRK 257 (794)
Q Consensus 201 -~~~v~ald~~tG~~~w~~~v~~~~~~s~~~~~v-g~~~lv~~d~~~g~L~v~~l~sg~ 257 (794)
...++.+|+++|+......+...... ..+.+- .++.+++.+. .++++|+.+++
T Consensus 201 ~~~~v~~id~~t~~v~~~~~~~~g~~p-~~la~~~d~~~lyv~~~---~v~~~d~~t~~ 255 (328)
T 3dsm_A 201 EAPSLYRIDAETFTVEKQFKFKLGDWP-SEVQLNGTRDTLYWINN---DIWRMPVEADR 255 (328)
T ss_dssp CCCEEEEEETTTTEEEEEEECCTTCCC-EEEEECTTSCEEEEESS---SEEEEETTCSS
T ss_pred CCceEEEEECCCCeEEEEEecCCCCCc-eeEEEecCCCEEEEEcc---EEEEEECCCCc
Confidence 13799999999998766543221111 112222 2455556643 78888888776
No 27
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=98.55 E-value=0.0002 Score=77.45 Aligned_cols=183 Identities=10% Similarity=0.147 Sum_probs=119.1
Q ss_pred EEEEeCCCEEEEEECcCCccceEEEcCcccceeeeeeeeCCEEEEE-EccCCeEEEEeCCCCcEeEEEeccCccccCCcc
Q 003800 56 VVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITL-SSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLL 134 (794)
Q Consensus 56 Vyv~t~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~V-s~~g~~v~A~d~~tG~llWe~~l~~~~~s~~~~ 134 (794)
+++++.++.|...|.++|+.+++...... +.++....++..+++ ++.++.|+.||..+|++++......... .+.
T Consensus 5 ~vs~~~d~~v~v~d~~~~~~~~~~~~~~~--~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~--~~~ 80 (391)
T 1l0q_A 5 YIANSESDNISVIDVTSNKVTATIPVGSN--PMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQ--GVA 80 (391)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEEECSSS--EEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEE--EEE
T ss_pred EEEcCCCCEEEEEECCCCeEEEEeecCCC--cceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCCCcc--ceE
Confidence 44456789999999999999998776544 334433334445544 4456799999999999999988765321 111
Q ss_pred ccccccccccCCeEEEEE--CCEEEEEECCCCcEEEEEeccCcceeeeeEEEEecCCEEEEEEecCCceeEEEEEEcCCC
Q 003800 135 LVPTNLKVDKDSLILVSS--KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNG 212 (794)
Q Consensus 135 ~~~~~~~~~~~~~V~V~~--~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~s~~~~~vyv~~~~g~~~~~v~ald~~tG 212 (794)
+.+ + ++.+++.. ++.++.+|..+|+..+....... +..+..+..+..+|+.+...+ .+..+|+.+|
T Consensus 81 ~sp-----d-g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~---~~~~~~s~dg~~l~~~~~~~~---~v~~~d~~~~ 148 (391)
T 1l0q_A 81 VSP-----D-GKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKS---PLGLALSPDGKKLYVTNNGDK---TVSVINTVTK 148 (391)
T ss_dssp ECT-----T-SSEEEEEETTTTEEEEEETTTTEEEEEEECSSS---EEEEEECTTSSEEEEEETTTT---EEEEEETTTT
T ss_pred ECC-----C-CCEEEEEECCCCEEEEEECCCCeEEEEEeCCCC---cceEEECCCCCEEEEEeCCCC---EEEEEECCCC
Confidence 211 2 34565654 69999999999999988775432 223332334456766554333 7899999999
Q ss_pred ceeeeeeeecccCccCceEEE-cCcEEEEEECCCCeEEEEEeecce
Q 003800 213 ELLNHETAAFSGGFVGDVALV-SSDTLVTLDTTRSILVTVSFKNRK 257 (794)
Q Consensus 213 ~~~w~~~v~~~~~~s~~~~~v-g~~~lv~~d~~~g~L~v~~l~sg~ 257 (794)
+.++..... .... .+.+- .++.+++.....+.+++.|+.+++
T Consensus 149 ~~~~~~~~~--~~~~-~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~ 191 (391)
T 1l0q_A 149 AVINTVSVG--RSPK-GIAVTPDGTKVYVANFDSMSISVIDTVTNS 191 (391)
T ss_dssp EEEEEEECC--SSEE-EEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred cEEEEEecC--CCcc-eEEECCCCCEEEEEeCCCCEEEEEECCCCe
Confidence 988766432 1221 12222 334554555567889999998887
No 28
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=98.54 E-value=0.00012 Score=79.17 Aligned_cols=214 Identities=11% Similarity=0.123 Sum_probs=132.9
Q ss_pred ceeecccccEeeEEeccCceeeeeeeeeccCCCEEEEEe-CCCEEEEEECcCCccceEEEcCcccceeeeeeeeCCEEEE
Q 003800 22 SLYEDQVGLMDWHQQYIGKVKHAVFHTQKTGRKRVVVST-EENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVIT 100 (794)
Q Consensus 22 Al~edqvG~~dW~~~~vG~~~~~~f~~~~~~~~~Vyv~t-~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~ 100 (794)
-++.-+.|+..+....-+.+....|. .+++.+|++. .++.|..+|.++|+.+++...... +..+.....+..++
T Consensus 15 ~v~d~~~~~~~~~~~~~~~~~~~~~s---~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~~--v~~~~~spdg~~l~ 89 (391)
T 1l0q_A 15 SVIDVTSNKVTATIPVGSNPMGAVIS---PDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSS--PQGVAVSPDGKQVY 89 (391)
T ss_dssp EEEETTTTEEEEEEECSSSEEEEEEC---TTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSS--EEEEEECTTSSEEE
T ss_pred EEEECCCCeEEEEeecCCCcceEEEC---CCCCEEEEECCCCCeEEEEECCCCeEEEEEECCCC--ccceEECCCCCEEE
Confidence 44555566666655543444333443 3355676554 789999999999999998877653 44443333444454
Q ss_pred E-EccCCeEEEEeCCCCcEeEEEeccCccccCCccccccccccccCCeEEEEE--CCEEEEEECCCCcEEEEEeccCcce
Q 003800 101 L-SSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSS--KGCLHAVSSIDGEILWTRDFAAESV 177 (794)
Q Consensus 101 V-s~~g~~v~A~d~~tG~llWe~~l~~~~~s~~~~~~~~~~~~~~~~~V~V~~--~g~l~ald~~tG~~~W~~~~~~~~~ 177 (794)
+ +..++.|+.||..+|+.++......... .+.+. .+ ++.+++.. ++.|+.+|..+|+..+.......
T Consensus 90 ~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~--~~~~s-----~d-g~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-- 159 (391)
T 1l0q_A 90 VTNMASSTLSVIDTTSNTVAGTVKTGKSPL--GLALS-----PD-GKKLYVTNNGDKTVSVINTVTKAVINTVSVGRS-- 159 (391)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEECSSSEE--EEEEC-----TT-SSEEEEEETTTTEEEEEETTTTEEEEEEECCSS--
T ss_pred EEECCCCEEEEEECCCCeEEEEEeCCCCcc--eEEEC-----CC-CCEEEEEeCCCCEEEEEECCCCcEEEEEecCCC--
Confidence 4 4455899999999999998887654321 11111 12 34455543 89999999999999988876432
Q ss_pred eeeeEEEEecCCEEEEEEecCCceeEEEEEEcCCCceeeeeeeecccCccCceEEE-cCcEEEEEEC--CCCeEEEEEee
Q 003800 178 EVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAFSGGFVGDVALV-SSDTLVTLDT--TRSILVTVSFK 254 (794)
Q Consensus 178 ~~~~~v~s~~~~~vyv~~~~g~~~~~v~ald~~tG~~~w~~~v~~~~~~s~~~~~v-g~~~lv~~d~--~~g~L~v~~l~ 254 (794)
+..+..+..+..+|+.+..++ .+..+|+.+|+.+..... ..... .+.+- .+..+++.+. ..+.+++.|+.
T Consensus 160 -~~~~~~~~dg~~l~~~~~~~~---~v~~~d~~~~~~~~~~~~--~~~~~-~~~~~~~g~~l~~~~~~~~~~~v~~~d~~ 232 (391)
T 1l0q_A 160 -PKGIAVTPDGTKVYVANFDSM---SISVIDTVTNSVIDTVKV--EAAPS-GIAVNPEGTKAYVTNVDKYFNTVSMIDTG 232 (391)
T ss_dssp -EEEEEECTTSSEEEEEETTTT---EEEEEETTTTEEEEEEEC--SSEEE-EEEECTTSSEEEEEEECSSCCEEEEEETT
T ss_pred -cceEEECCCCCEEEEEeCCCC---EEEEEECCCCeEEEEEec--CCCcc-ceEECCCCCEEEEEecCcCCCcEEEEECC
Confidence 223332334556776554433 789999999987765532 11111 12221 3345555543 46889999998
Q ss_pred cce
Q 003800 255 NRK 257 (794)
Q Consensus 255 sg~ 257 (794)
+++
T Consensus 233 ~~~ 235 (391)
T 1l0q_A 233 TNK 235 (391)
T ss_dssp TTE
T ss_pred CCe
Confidence 887
No 29
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=98.50 E-value=0.00034 Score=80.83 Aligned_cols=191 Identities=13% Similarity=0.033 Sum_probs=119.6
Q ss_pred CCEEEEEe-CCCEEEEEECcCCccceEEEcCcccceeeeeeeeCCEEEEEEccCCeEEEEeC--CCCcEeEEEeccCccc
Q 003800 53 RKRVVVST-EENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNL--PDGQMVWESFLRGSKH 129 (794)
Q Consensus 53 ~~~Vyv~t-~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~--~tG~llWe~~l~~~~~ 129 (794)
++++|++. .+|.|..+|.++|+++.+...... ..++...-++..+++++.++.|+.||. .+|+.+-+........
T Consensus 148 ~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~--~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g~~p~ 225 (543)
T 1nir_A 148 PNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA--VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEAR 225 (543)
T ss_dssp GGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT--EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEE
T ss_pred CCEEEEEEcCCCeEEEEECCCceEEEEEecCcc--cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecCCCcc
Confidence 45666655 478999999999999988775443 333333345567777666689999999 8999988777543221
Q ss_pred cCCcccccccccc----ccCCeEEEEE--CCEEEEEECCCCcEEEEEeccCc---------ceeeeeEEEEecCCEEEEE
Q 003800 130 SKPLLLVPTNLKV----DKDSLILVSS--KGCLHAVSSIDGEILWTRDFAAE---------SVEVQQVIQLDESDQIYVV 194 (794)
Q Consensus 130 s~~~~~~~~~~~~----~~~~~V~V~~--~g~l~ald~~tG~~~W~~~~~~~---------~~~~~~~v~s~~~~~vyv~ 194 (794)
.+. ... + ++.+++.+ ++.+..+|..+++++.+...... ...+..+..+..+..+|+
T Consensus 226 -----~va--~sp~~~~d-g~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~v- 296 (543)
T 1nir_A 226 -----SVE--SSKFKGYE-DRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIV- 296 (543)
T ss_dssp -----EEE--ECCSTTCT-TTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEE-
T ss_pred -----eEE--eCCCcCCC-CCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEE-
Confidence 111 022 2 46677763 89999999999999988865321 101233432233445554
Q ss_pred EecCCceeEEEEEEcCCCceeeeeeeecccCccCceEEE-cCcEEEEEECCCCeEEEEEeecce
Q 003800 195 GYAGSSQFHAYQINAMNGELLNHETAAFSGGFVGDVALV-SSDTLVTLDTTRSILVTVSFKNRK 257 (794)
Q Consensus 195 ~~~g~~~~~v~ald~~tG~~~w~~~v~~~~~~s~~~~~v-g~~~lv~~d~~~g~L~v~~l~sg~ 257 (794)
+..+. .++..+|..+++.+....+....... ...+- .+.++++.....+.+.++|+.+++
T Consensus 297 s~~~~--g~i~vvd~~~~~~l~~~~i~~~~~~~-~~~~spdg~~l~va~~~~~~v~v~D~~tg~ 357 (543)
T 1nir_A 297 NVKET--GKVLLVNYKDIDNLTVTSIGAAPFLH-DGGWDSSHRYFMTAANNSNKVAVIDSKDRR 357 (543)
T ss_dssp EETTT--TEEEEEECTTSSSCEEEEEECCSSCC-CEEECTTSCEEEEEEGGGTEEEEEETTTTE
T ss_pred EECCC--CeEEEEEecCCCcceeEEeccCcCcc-CceECCCCCEEEEEecCCCeEEEEECCCCe
Confidence 44321 27888999988776543333222222 22232 334455555456789999999988
No 30
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=98.46 E-value=0.00036 Score=76.44 Aligned_cols=182 Identities=12% Similarity=0.024 Sum_probs=103.4
Q ss_pred EEEEEECcCCccceEEEcCcccceeeeeeeeCCEEEEEEccCCeEEEEeCCCCcEeEEEeccCc-cccCCcccccccccc
Q 003800 64 VIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGS-KHSKPLLLVPTNLKV 142 (794)
Q Consensus 64 ~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~l~~~-~~s~~~~~~~~~~~~ 142 (794)
.|+.+|+++|.......+.....+..+....++.+++.++.++.|+.||..+|+.......... ........+ ..
T Consensus 102 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~----~~ 177 (433)
T 3bws_A 102 KLIALDKEGITHRFISRFKTGFQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETI----SI 177 (433)
T ss_dssp CEEECCBTTCSEEEEEEEECSSCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEE----EE
T ss_pred EEEEECCCCCcceEEEEEcCCCCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEE----EE
Confidence 7888888877433333332222222332223455555555567899999999999864432110 000001111 12
Q ss_pred ccCCeEEEEE--CCEEEEEECCCCcEEEEEeccCcceeeeeEEEEecCCEEEEEEecCCceeEEEEEEcCCCceeeeeee
Q 003800 143 DKDSLILVSS--KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETA 220 (794)
Q Consensus 143 ~~~~~V~V~~--~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~s~~~~~vyv~~~~g~~~~~v~ald~~tG~~~w~~~v 220 (794)
..++.+++.. ++.+..+|..+|+..++....... +..+..+..+..+|+.+..++ .+..+|+.+|+.++....
T Consensus 178 ~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~---~i~~~d~~~~~~~~~~~~ 252 (433)
T 3bws_A 178 PEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKW--SKILLYDPIRDLVYCSNWISE---DISVIDRKTKLEIRKTDK 252 (433)
T ss_dssp GGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSS--EEEEEEETTTTEEEEEETTTT---EEEEEETTTTEEEEECCC
T ss_pred cCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCC--eeEEEEcCCCCEEEEEecCCC---cEEEEECCCCcEEEEecC
Confidence 2245666653 799999999999999988743322 223332345666777664433 789999999998776542
Q ss_pred ecccCccCceEEE-cCcEEEEEEC-------CCCeEEEEEeecce
Q 003800 221 AFSGGFVGDVALV-SSDTLVTLDT-------TRSILVTVSFKNRK 257 (794)
Q Consensus 221 ~~~~~~s~~~~~v-g~~~lv~~d~-------~~g~L~v~~l~sg~ 257 (794)
. ..+. .+.+- .++.+++... .++.+++.|+.+++
T Consensus 253 ~--~~~~-~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~ 294 (433)
T 3bws_A 253 I--GLPR-GLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEK 294 (433)
T ss_dssp C--SEEE-EEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTE
T ss_pred C--CCce-EEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCc
Confidence 1 1111 11121 3334544442 24678899988876
No 31
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=98.36 E-value=0.0015 Score=72.32 Aligned_cols=182 Identities=13% Similarity=0.095 Sum_probs=120.4
Q ss_pred CCCEEEEEeCCCEEEEEECcCCccceEEEcCcccceeeeeeeeCCEEEEEEccCCeEEEEeCCCCcEeEEEeccCccccC
Q 003800 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSK 131 (794)
Q Consensus 52 ~~~~Vyv~t~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~l~~~~~s~ 131 (794)
+++.+++++.+|.|...|.++|+.+++..-. ...+..+ ...++.++.++.++.|+.||..+|+.+..........
T Consensus 128 ~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h-~~~v~~~--~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v-- 202 (445)
T 2ovr_B 128 CGNRIVSGSDDNTLKVWSAVTGKCLRTLVGH-TGGVWSS--QMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTV-- 202 (445)
T ss_dssp ETTEEEEEETTSCEEEEETTTCCEEEECCCC-SSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCE--
T ss_pred cCCEEEEEECCCcEEEEECCCCcEEEEEcCC-CCCEEEE--EecCCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcE--
Confidence 4678999999999999999999988775422 2234444 2224455556666799999999999998887554322
Q ss_pred CccccccccccccCCeEEEEE-CCEEEEEECCCCcEEEEEeccCcceeeeeEEEEecCCEEEEEEecCCceeEEEEEEcC
Q 003800 132 PLLLVPTNLKVDKDSLILVSS-KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAM 210 (794)
Q Consensus 132 ~~~~~~~~~~~~~~~~V~V~~-~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~s~~~~~vyv~~~~g~~~~~v~ald~~ 210 (794)
..+ ..+ ++.++..+ +|.+...|..+|+..+......... ..+ ...+..++..+.+| .+..+|+.
T Consensus 203 --~~~----~~~-~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v--~~~--~~~~~~l~~~~~dg----~i~iwd~~ 267 (445)
T 2ovr_B 203 --RCM----HLH-EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAV--RCV--QYDGRRVVSGAYDF----MVKVWDPE 267 (445)
T ss_dssp --EEE----EEE-TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCE--EEE--EECSSCEEEEETTS----CEEEEEGG
T ss_pred --EEE----Eec-CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccE--EEE--EECCCEEEEEcCCC----EEEEEECC
Confidence 111 122 45555554 9999999999999999886544332 122 23455555555455 68889999
Q ss_pred CCceeeeeeeecccCccCceEEEcCcEEEEEECCCCeEEEEEeecce
Q 003800 211 NGELLNHETAAFSGGFVGDVALVSSDTLVTLDTTRSILVTVSFKNRK 257 (794)
Q Consensus 211 tG~~~w~~~v~~~~~~s~~~~~vg~~~lv~~d~~~g~L~v~~l~sg~ 257 (794)
+|+.+.+..... ..+ .++-..+..+++.. ..+.+.+.|+.+++
T Consensus 268 ~~~~~~~~~~~~-~~v--~~~~~~~~~l~~~~-~d~~i~i~d~~~~~ 310 (445)
T 2ovr_B 268 TETCLHTLQGHT-NRV--YSLQFDGIHVVSGS-LDTSIRVWDVETGN 310 (445)
T ss_dssp GTEEEEEECCCS-SCE--EEEEECSSEEEEEE-TTSCEEEEETTTCC
T ss_pred CCcEeEEecCCC-Cce--EEEEECCCEEEEEe-CCCeEEEEECCCCC
Confidence 999887764211 111 11222556666665 36889999999887
No 32
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=98.36 E-value=0.00015 Score=76.03 Aligned_cols=139 Identities=11% Similarity=0.066 Sum_probs=87.4
Q ss_pred ceeecccccEeeEEeccC---ceeeeeeeeeccCCCEEEEEeC-CCEEEEEECcCCccceEEEcCccc----ceeeeeee
Q 003800 22 SLYEDQVGLMDWHQQYIG---KVKHAVFHTQKTGRKRVVVSTE-ENVIASLDLRHGEIFWRHVLGIND----VVDGIDIA 93 (794)
Q Consensus 22 Al~edqvG~~dW~~~~vG---~~~~~~f~~~~~~~~~Vyv~t~-~g~l~ALn~~tG~ivWR~~l~~~~----~i~~l~~~ 93 (794)
.++.-+.|+..+....-+ .+....|. .+++.+|++.. ++.|..+|+.+|+++++..+.... .+.++...
T Consensus 14 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~s---~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s 90 (337)
T 1pby_B 14 VVIDTEKMAVDKVITIADAGPTPMVPMVA---PGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALS 90 (337)
T ss_dssp EEEETTTTEEEEEEECTTCTTCCCCEEEC---TTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEEC
T ss_pred EEEECCCCcEEEEEEcCCCCCCccceEEc---CCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEEC
Confidence 345556677766665534 34444443 23556777665 689999999999999998875411 12233223
Q ss_pred eCCEEEEEEc------------cCCeEEEEeCCCCcEeEEEeccCccccCCccccccccccccCCeEEEEECCEEEEEEC
Q 003800 94 LGKYVITLSS------------DGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSSKGCLHAVSS 161 (794)
Q Consensus 94 ~g~~~V~Vs~------------~g~~v~A~d~~tG~llWe~~l~~~~~s~~~~~~~~~~~~~~~~~V~V~~~g~l~ald~ 161 (794)
.++..++++. .++.|+.||..+|+.++........ ..+.+.+ + ++.+++. ++.++.+|.
T Consensus 91 ~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~--~~~~~s~-----d-g~~l~~~-~~~i~~~d~ 161 (337)
T 1pby_B 91 PDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQI--TMLAWAR-----D-GSKLYGL-GRDLHVMDP 161 (337)
T ss_dssp TTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSC--CCEEECT-----T-SSCEEEE-SSSEEEEET
T ss_pred CCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCCc--ceeEECC-----C-CCEEEEe-CCeEEEEEC
Confidence 3344555553 2479999999999999988764332 1222211 2 2334444 778899998
Q ss_pred CCCcEEEEEec
Q 003800 162 IDGEILWTRDF 172 (794)
Q Consensus 162 ~tG~~~W~~~~ 172 (794)
.+|++......
T Consensus 162 ~~~~~~~~~~~ 172 (337)
T 1pby_B 162 EAGTLVEDKPI 172 (337)
T ss_dssp TTTEEEEEECS
T ss_pred CCCcEeeeeec
Confidence 88888766544
No 33
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.29 E-value=0.00019 Score=75.16 Aligned_cols=187 Identities=10% Similarity=0.060 Sum_probs=123.6
Q ss_pred CCEEEEEeC---CCEEEEEECcCCccceEEEcCcccceeeeeeeeCCEEEEEEc-cCCeEEEEeCCCCcEeEEEecc-Cc
Q 003800 53 RKRVVVSTE---ENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSS-DGSTLRAWNLPDGQMVWESFLR-GS 127 (794)
Q Consensus 53 ~~~Vyv~t~---~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~-~g~~v~A~d~~tG~llWe~~l~-~~ 127 (794)
++++|+++. .+.|..+|++||+++=+..++...-..++. ..++ .++++. .++.+..+|+++++++-+.... ++
T Consensus 31 dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~-~~g~-~lyv~t~~~~~v~viD~~t~~v~~~i~~g~~~ 108 (266)
T 2iwa_A 31 NDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLT-LLNE-KLYQVVWLKNIGFIYDRRTLSNIKNFTHQMKD 108 (266)
T ss_dssp TTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEE-EETT-EEEEEETTCSEEEEEETTTTEEEEEEECCSSS
T ss_pred CCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEE-EeCC-EEEEEEecCCEEEEEECCCCcEEEEEECCCCC
Confidence 379999986 589999999999999998886542122341 2344 555544 5689999999999999998866 32
Q ss_pred cccCCccccccccccccCCeEEEE-ECCEEEEEECCCCcEEEEEeccCcce---eeeeEEEEecCCEEEEEEecCCceeE
Q 003800 128 KHSKPLLLVPTNLKVDKDSLILVS-SKGCLHAVSSIDGEILWTRDFAAESV---EVQQVIQLDESDQIYVVGYAGSSQFH 203 (794)
Q Consensus 128 ~~s~~~~~~~~~~~~~~~~~V~V~-~~g~l~ald~~tG~~~W~~~~~~~~~---~~~~~v~s~~~~~vyv~~~~g~~~~~ 203 (794)
.. .+ ..+ ++.+|+. .++.|+.+|+++.++.=+........ .+..+. ..++.+|+.....+ .
T Consensus 109 g~----gl-----t~D-g~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele--~~dg~lyvn~~~~~---~ 173 (266)
T 2iwa_A 109 GW----GL-----ATD-GKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELE--YINGEVWANIWQTD---C 173 (266)
T ss_dssp CC----EE-----EEC-SSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEE--EETTEEEEEETTSS---E
T ss_pred eE----EE-----EEC-CCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEE--EECCEEEEecCCCC---e
Confidence 21 12 223 4667776 47899999999999887766543211 122332 23779997664444 8
Q ss_pred EEEEEcCCCceeeeeeeecc--c---------CccCceEEE-cCcEEEEEECCCCeEEEEEeecc
Q 003800 204 AYQINAMNGELLNHETAAFS--G---------GFVGDVALV-SSDTLVTLDTTRSILVTVSFKNR 256 (794)
Q Consensus 204 v~ald~~tG~~~w~~~v~~~--~---------~~s~~~~~v-g~~~lv~~d~~~g~L~v~~l~sg 256 (794)
+..+|++||+.+....++.. . .....+.+- +++.+.++....+.++++++...
T Consensus 174 V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 174 IARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp EEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred EEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 99999999999887766411 0 011122222 34456666666677888887654
No 34
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=98.22 E-value=0.00081 Score=70.30 Aligned_cols=150 Identities=8% Similarity=0.020 Sum_probs=98.6
Q ss_pred EEEEEeCCCEEEEEECcCCccceEEEcCccc-ceeeeeeeeCCEEEEE-EccCCeEEEEeCCCCcEeEEEeccCcc----
Q 003800 55 RVVVSTEENVIASLDLRHGEIFWRHVLGIND-VVDGIDIALGKYVITL-SSDGSTLRAWNLPDGQMVWESFLRGSK---- 128 (794)
Q Consensus 55 ~Vyv~t~~g~l~ALn~~tG~ivWR~~l~~~~-~i~~l~~~~g~~~V~V-s~~g~~v~A~d~~tG~llWe~~l~~~~---- 128 (794)
.+++++.++.|..+|+.+|+++++..++... ....+....++..+++ +..++.|+.||..+|+.+++.......
T Consensus 3 ~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~ 82 (337)
T 1pby_B 3 YILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVK 82 (337)
T ss_dssp EEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEE
T ss_pred EEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccc
Confidence 5777888999999999999999998876521 1233322333334444 445679999999999999988864310
Q ss_pred ccCCccccccccccccCCeEEEEE-------------CCEEEEEECCCCcEEEEEeccCcceeeeeEEEEecCCEEEEEE
Q 003800 129 HSKPLLLVPTNLKVDKDSLILVSS-------------KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVG 195 (794)
Q Consensus 129 ~s~~~~~~~~~~~~~~~~~V~V~~-------------~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~s~~~~~vyv~~ 195 (794)
....+.+. .+ ++.+++.. ++.+..+|..+|+..+....+.. +..+..+.++..+|+.
T Consensus 83 ~~~~~~~s-----~d-g~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~---~~~~~~s~dg~~l~~~- 152 (337)
T 1pby_B 83 SLFGAALS-----PD-GKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQ---ITMLAWARDGSKLYGL- 152 (337)
T ss_dssp CTTCEEEC-----TT-SSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSS---CCCEEECTTSSCEEEE-
T ss_pred cccceEEC-----CC-CCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCC---cceeEECCCCCEEEEe-
Confidence 00111111 12 34566653 58999999999999998876432 2223223344457764
Q ss_pred ecCCceeEEEEEEcCCCceeeeee
Q 003800 196 YAGSSQFHAYQINAMNGELLNHET 219 (794)
Q Consensus 196 ~~g~~~~~v~ald~~tG~~~w~~~ 219 (794)
.+ .+..+|+.+|+.+....
T Consensus 153 -~~----~i~~~d~~~~~~~~~~~ 171 (337)
T 1pby_B 153 -GR----DLHVMDPEAGTLVEDKP 171 (337)
T ss_dssp -SS----SEEEEETTTTEEEEEEC
T ss_pred -CC----eEEEEECCCCcEeeeee
Confidence 33 68899999999876554
No 35
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=98.20 E-value=0.0022 Score=70.13 Aligned_cols=192 Identities=13% Similarity=0.127 Sum_probs=117.1
Q ss_pred CCEEEEEe-CCCEEEEEECcCCccceEEEcCc----ccceeeeeeeeCCEEEEEEccCCeEEEEeCCCCcEeEEEeccCc
Q 003800 53 RKRVVVST-EENVIASLDLRHGEIFWRHVLGI----NDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGS 127 (794)
Q Consensus 53 ~~~Vyv~t-~~g~l~ALn~~tG~ivWR~~l~~----~~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~l~~~ 127 (794)
++.+++++ .++.|..+|.++|+......... ...+..+....++.+++.++.++.++.||..+|+.+++......
T Consensus 133 ~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~ 212 (433)
T 3bws_A 133 NTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGK 212 (433)
T ss_dssp SSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSS
T ss_pred CCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCC
Confidence 55666655 46789999999999885433211 11233332223445555455568999999999999999875432
Q ss_pred cccCCccccccccccccCCeEEEEE--CCEEEEEECCCCcEEEEEeccCcceeeeeEEEEecCCEEEEEEecCC----ce
Q 003800 128 KHSKPLLLVPTNLKVDKDSLILVSS--KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGS----SQ 201 (794)
Q Consensus 128 ~~s~~~~~~~~~~~~~~~~~V~V~~--~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~s~~~~~vyv~~~~g~----~~ 201 (794)
.. ..+.+ ..+ ++.+++.. ++.++.+|..+|+..+....... +..+..+..+..+++.+..++ ..
T Consensus 213 ~~-~~~~~-----~~~-~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~---~~~~~~~~~g~~l~~~~~~~~~~~~~d 282 (433)
T 3bws_A 213 WS-KILLY-----DPI-RDLVYCSNWISEDISVIDRKTKLEIRKTDKIGL---PRGLLLSKDGKELYIAQFSASNQESGG 282 (433)
T ss_dssp SE-EEEEE-----ETT-TTEEEEEETTTTEEEEEETTTTEEEEECCCCSE---EEEEEECTTSSEEEEEEEESCTTCSCC
T ss_pred Ce-eEEEE-----cCC-CCEEEEEecCCCcEEEEECCCCcEEEEecCCCC---ceEEEEcCCCCEEEEEECCCCccccCC
Confidence 21 11111 112 34565554 79999999999999888765432 333332234556776654221 13
Q ss_pred eEEEEEEcCCCceeeeeeeecccCccCceEEE-cCcEEEEEECCCCeEEEEEeecce
Q 003800 202 FHAYQINAMNGELLNHETAAFSGGFVGDVALV-SSDTLVTLDTTRSILVTVSFKNRK 257 (794)
Q Consensus 202 ~~v~ald~~tG~~~w~~~v~~~~~~s~~~~~v-g~~~lv~~d~~~g~L~v~~l~sg~ 257 (794)
..+..+|+.+|+.+..... +.... .+.+. .++.+++.....+.+.+.++.+++
T Consensus 283 g~i~~~d~~~~~~~~~~~~--~~~~~-~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~ 336 (433)
T 3bws_A 283 GRLGIYSMDKEKLIDTIGP--PGNKR-HIVSGNTENKIYVSDMCCSKIEVYDLKEKK 336 (433)
T ss_dssp EEEEEEETTTTEEEEEEEE--EECEE-EEEECSSTTEEEEEETTTTEEEEEETTTTE
T ss_pred CeEEEEECCCCcEEeeccC--CCCcc-eEEECCCCCEEEEEecCCCEEEEEECCCCc
Confidence 4789999999988776532 11111 12222 233555565667899999999887
No 36
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=98.17 E-value=0.0019 Score=74.60 Aligned_cols=198 Identities=9% Similarity=-0.003 Sum_probs=112.4
Q ss_pred ccCCCEEEEEeCCCEEEEEEC--cCCccceEEEcCcccceeeeeeee----CCEEEEEEc-cCCeEEEEeCCCCcEeEEE
Q 003800 50 KTGRKRVVVSTEENVIASLDL--RHGEIFWRHVLGINDVVDGIDIAL----GKYVITLSS-DGSTLRAWNLPDGQMVWES 122 (794)
Q Consensus 50 ~~~~~~Vyv~t~~g~l~ALn~--~tG~ivWR~~l~~~~~i~~l~~~~----g~~~V~Vs~-~g~~v~A~d~~tG~llWe~ 122 (794)
+.+++.+|+++.++.|..+|. +||+++-+...... ..++...- ++..+++++ .++.|..||..+++++.+.
T Consensus 187 spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g~~--p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i 264 (543)
T 1nir_A 187 SASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIE--ARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIV 264 (543)
T ss_dssp CTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSE--EEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEE
T ss_pred CCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecCCC--cceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceee
Confidence 345778999999999999999 89998776654322 33443333 455666665 3689999999999999988
Q ss_pred eccCcccc-----CCcccccccccccc-CCeEEEE--ECCEEEEEECCCCcEEEEEeccCcceeeeeEEEEecCCEEEEE
Q 003800 123 FLRGSKHS-----KPLLLVPTNLKVDK-DSLILVS--SKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVV 194 (794)
Q Consensus 123 ~l~~~~~s-----~~~~~~~~~~~~~~-~~~V~V~--~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~s~~~~~vyv~ 194 (794)
...+.... ....... ..... ++.+++. .+++|..+|..+++.+.....+.... +..+..+.++..+|+.
T Consensus 265 ~~~g~~~~~~~~~~~~~v~~--i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~-~~~~~~spdg~~l~va 341 (543)
T 1nir_A 265 STRGMTVDTQTYHPEPRVAA--IIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPF-LHDGGWDSSHRYFMTA 341 (543)
T ss_dssp ECCEECSSSCCEESCCCEEE--EEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSS-CCCEEECTTSCEEEEE
T ss_pred cccCcccCccccccCCceEE--EEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcC-ccCceECCCCCEEEEE
Confidence 76431110 0000000 01111 2344443 27889999988876443222221111 2223222334446665
Q ss_pred EecCCceeEEEEEEcCCCceeeeeeeec-ccCccCceEEE-c-CcEEEEEECCCCeEEEEEeec
Q 003800 195 GYAGSSQFHAYQINAMNGELLNHETAAF-SGGFVGDVALV-S-SDTLVTLDTTRSILVTVSFKN 255 (794)
Q Consensus 195 ~~~g~~~~~v~ald~~tG~~~w~~~v~~-~~~~s~~~~~v-g-~~~lv~~d~~~g~L~v~~l~s 255 (794)
+...+ .+..+|+++|+.+....+.. |....+..++- . +.+++......+.+.++++.+
T Consensus 342 ~~~~~---~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~ 402 (543)
T 1nir_A 342 ANNSN---KVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDP 402 (543)
T ss_dssp EGGGT---EEEEEETTTTEEEEEEECSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCT
T ss_pred ecCCC---eEEEEECCCCeEEEeeccCCCCCCCCCcccCCCCCccEEEeccCCCceEEEEEeCC
Confidence 54333 67779999999887765422 22111212221 2 223333323457888888887
No 37
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=98.16 E-value=0.0025 Score=68.67 Aligned_cols=190 Identities=12% Similarity=0.140 Sum_probs=110.4
Q ss_pred CCC-EEEEEeCCCEEEEEEC----cCCccceEEEcC----c-----------ccceeeeeeeeCCEEEEEEccCCeEEEE
Q 003800 52 GRK-RVVVSTEENVIASLDL----RHGEIFWRHVLG----I-----------NDVVDGIDIALGKYVITLSSDGSTLRAW 111 (794)
Q Consensus 52 ~~~-~Vyv~t~~g~l~ALn~----~tG~ivWR~~l~----~-----------~~~i~~l~~~~g~~~V~Vs~~g~~v~A~ 111 (794)
+++ .+++++.+|.|...|. .+|+..|+.... . ...+..+.....+..++.++.++.|+.|
T Consensus 56 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~ 135 (425)
T 1r5m_A 56 LDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTGVENGELRLW 135 (425)
T ss_dssp SCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred CCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEEEEEeCCCeEEEE
Confidence 355 7889999999999999 999977765321 1 1123333222344455556666799999
Q ss_pred eCCCCcEeEEEeccCccccCCccccccccccccCCeEEEEE-CCEEEEEECCCCcEEEEEeccCccee------------
Q 003800 112 NLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSS-KGCLHAVSSIDGEILWTRDFAAESVE------------ 178 (794)
Q Consensus 112 d~~tG~llWe~~l~~~~~s~~~~~~~~~~~~~~~~~V~V~~-~g~l~ald~~tG~~~W~~~~~~~~~~------------ 178 (794)
| .+|+.+.......... ..+.+.+ + +..++..+ +|.+...|..+|+.............
T Consensus 136 ~-~~~~~~~~~~~~~~~v-~~~~~~~-----~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (425)
T 1r5m_A 136 N-KTGALLNVLNFHRAPI-VSVKWNK-----D-GTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGS 207 (425)
T ss_dssp E-TTSCEEEEECCCCSCE-EEEEECT-----T-SSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CC
T ss_pred e-CCCCeeeeccCCCccE-EEEEECC-----C-CCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcc
Confidence 9 7899998887554332 1111211 1 33455444 89999999999999988876543200
Q ss_pred -eeeEEEEecCCEEEEEEecCCceeEEEEEEcCCCceeeeeeeecccCccCceEEE-cCcEEEEEECCCCeEEEEEeecc
Q 003800 179 -VQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAFSGGFVGDVALV-SSDTLVTLDTTRSILVTVSFKNR 256 (794)
Q Consensus 179 -~~~~v~s~~~~~vyv~~~~g~~~~~v~ald~~tG~~~w~~~v~~~~~~s~~~~~v-g~~~lv~~d~~~g~L~v~~l~sg 256 (794)
...+. ...++.+++.+.+| .+..+|..+++.+..... ....+.. +.+. .+..+++.. ..+.+.+.++.++
T Consensus 208 ~~~~~~-~~~~~~~~~~~~~g----~i~~~d~~~~~~~~~~~~-~~~~i~~-~~~~~~~~~l~~~~-~d~~i~i~d~~~~ 279 (425)
T 1r5m_A 208 LGVDVE-WVDDDKFVIPGPKG----AIFVYQITEKTPTGKLIG-HHGPISV-LEFNDTNKLLLSAS-DDGTLRIWHGGNG 279 (425)
T ss_dssp CBSCCE-EEETTEEEEECGGG----CEEEEETTCSSCSEEECC-CSSCEEE-EEEETTTTEEEEEE-TTSCEEEECSSSB
T ss_pred eeeEEE-EcCCCEEEEEcCCC----eEEEEEcCCCceeeeecc-CCCceEE-EEECCCCCEEEEEc-CCCEEEEEECCCC
Confidence 11111 12355655544444 788999999988766531 1111211 2222 344666665 4688999998887
Q ss_pred e
Q 003800 257 K 257 (794)
Q Consensus 257 ~ 257 (794)
+
T Consensus 280 ~ 280 (425)
T 1r5m_A 280 N 280 (425)
T ss_dssp S
T ss_pred c
Confidence 6
No 38
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=98.15 E-value=0.0019 Score=75.04 Aligned_cols=202 Identities=12% Similarity=0.016 Sum_probs=119.5
Q ss_pred CCEEEEEeC-CCEEEEEECcCCccceEEEcCcccceeeeeeeeCCEEEEEEccCCeEEEEeCC--CCcEeEEEeccCccc
Q 003800 53 RKRVVVSTE-ENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLP--DGQMVWESFLRGSKH 129 (794)
Q Consensus 53 ~~~Vyv~t~-~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~--tG~llWe~~l~~~~~ 129 (794)
++.+||+.. +|.|..+|..||+++.+...... ..++...-++..+++++.++.|..||.. +++++.+........
T Consensus 166 ~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~~--p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P~ 243 (567)
T 1qks_A 166 ENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYA--VHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEAR 243 (567)
T ss_dssp GGEEEEEETTTTEEEEEETTTCCEEEEEECSSC--EEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEE
T ss_pred CceEEEEeCCCCeEEEEECCCCeEEEEEeCCCC--ccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCCc
Confidence 456776654 69999999999999999877544 2344334455667777666799999996 999998887654321
Q ss_pred cCCccccccccccccCCeEEEE--ECCEEEEEECCCCcEEEEEeccCc---------ceeeeeEEEEecCCEEEEEEecC
Q 003800 130 SKPLLLVPTNLKVDKDSLILVS--SKGCLHAVSSIDGEILWTRDFAAE---------SVEVQQVIQLDESDQIYVVGYAG 198 (794)
Q Consensus 130 s~~~~~~~~~~~~~~~~~V~V~--~~g~l~ald~~tG~~~W~~~~~~~---------~~~~~~~v~s~~~~~vyv~~~~g 198 (794)
.+.+.+++ ..+ ++.++|. .++.+..+|..|++++.+...... ...+..+.. ...+..+++....
T Consensus 244 --~ia~s~~~-~pD-Gk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~-s~~~~~~vv~~~~ 318 (567)
T 1qks_A 244 --SIETSKME-GWE-DKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILA-SHYRPEFIVNVKE 318 (567)
T ss_dssp --EEEECCST-TCT-TTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEE-CSSSSEEEEEETT
T ss_pred --eeEEcccc-CCC-CCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEE-cCCCCEEEEEecC
Confidence 11111000 012 5677776 389999999999999998875321 101122322 2233344444432
Q ss_pred CceeEEEEEEcCCCceeeeeeeecccCccCceEEE-cCcEEEEEECCCCeEEEEEeecceeeeEEEee
Q 003800 199 SSQFHAYQINAMNGELLNHETAAFSGGFVGDVALV-SSDTLVTLDTTRSILVTVSFKNRKIAFQETHL 265 (794)
Q Consensus 199 ~~~~~v~ald~~tG~~~w~~~v~~~~~~s~~~~~v-g~~~lv~~d~~~g~L~v~~l~sg~~~~~~~~l 265 (794)
. .++..+|..+.+.+.-..+.....+.+ ..+- .+.++++.+...+.+.++|+.++++ ...+++
T Consensus 319 ~--g~v~~vd~~~~~~~~v~~i~~~~~~~d-~~~~pdgr~~~va~~~sn~V~ViD~~t~kl-~~~i~v 382 (567)
T 1qks_A 319 T--GKILLVDYTDLNNLKTTEISAERFLHD-GGLDGSHRYFITAANARNKLVVIDTKEGKL-VAIEDT 382 (567)
T ss_dssp T--TEEEEEETTCSSEEEEEEEECCSSEEE-EEECTTSCEEEEEEGGGTEEEEEETTTTEE-EEEEEC
T ss_pred C--CeEEEEecCCCccceeeeeeccccccC-ceECCCCCEEEEEeCCCCeEEEEECCCCcE-EEEEec
Confidence 1 167777877665333222222211111 1111 2345555555567899999999873 343443
No 39
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=98.12 E-value=0.0075 Score=63.97 Aligned_cols=189 Identities=14% Similarity=0.161 Sum_probs=111.7
Q ss_pred CCEEEEEeCCCEEEEEECcCCccceEEEcCcc-cceeeeeeeeCCEEEEEEccCCeEEEEeCCCCcEeEEEeccCccccC
Q 003800 53 RKRVVVSTEENVIASLDLRHGEIFWRHVLGIN-DVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSK 131 (794)
Q Consensus 53 ~~~Vyv~t~~g~l~ALn~~tG~ivWR~~l~~~-~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~l~~~~~s~ 131 (794)
.+.++.++.++.|.--|.++++..-+..+... ..+..+........++.++.++.|+.||..+|+.+.......... .
T Consensus 48 ~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~-~ 126 (321)
T 3ow8_A 48 SETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDA-W 126 (321)
T ss_dssp -CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCC-C
T ss_pred CCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccE-E
Confidence 45688899999998888888765444444432 233333222333445445567899999999999998877654322 1
Q ss_pred CccccccccccccCCeEEEE-ECCEEEEEECCCCcEEEEEeccCcceeeeeEEEEecCCEEEEEEecCCceeEEEEEEcC
Q 003800 132 PLLLVPTNLKVDKDSLILVS-SKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAM 210 (794)
Q Consensus 132 ~~~~~~~~~~~~~~~~V~V~-~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~s~~~~~vyv~~~~g~~~~~v~ald~~ 210 (794)
.+.+.+ + +..++.. .+|.+...|..+|+..+......... ..+..+..+..+...+.+| .+..+|+.
T Consensus 127 ~~~~sp-----d-g~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v--~~~~~spdg~~lasg~~dg----~i~iwd~~ 194 (321)
T 3ow8_A 127 TLAFSP-----D-SQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFI--LSIAYSPDGKYLASGAIDG----IINIFDIA 194 (321)
T ss_dssp CEEECT-----T-SSEEEEECTTSEEEEEETTTCSEEEEEECSSSCE--EEEEECTTSSEEEEEETTS----CEEEEETT
T ss_pred EEEECC-----C-CCEEEEEcCCCcEEEEEcCCCceeEEecCCCceE--EEEEECCCCCEEEEEcCCC----eEEEEECC
Confidence 122222 2 2334444 38999999999999998876654332 2232222333444444444 68888999
Q ss_pred CCceeeeeeeecccCccCceEEE-cCcEEEEEECCCCeEEEEEeecce
Q 003800 211 NGELLNHETAAFSGGFVGDVALV-SSDTLVTLDTTRSILVTVSFKNRK 257 (794)
Q Consensus 211 tG~~~w~~~v~~~~~~s~~~~~v-g~~~lv~~d~~~g~L~v~~l~sg~ 257 (794)
+|+.+.+..-. ...+. .+.+- .+..+++.. ..+.+.+-|+.+++
T Consensus 195 ~~~~~~~~~~h-~~~v~-~l~~spd~~~l~s~s-~dg~i~iwd~~~~~ 239 (321)
T 3ow8_A 195 TGKLLHTLEGH-AMPIR-SLTFSPDSQLLVTAS-DDGYIKIYDVQHAN 239 (321)
T ss_dssp TTEEEEEECCC-SSCCC-EEEECTTSCEEEEEC-TTSCEEEEETTTCC
T ss_pred CCcEEEEEccc-CCcee-EEEEcCCCCEEEEEc-CCCeEEEEECCCcc
Confidence 99887655311 11111 12221 334555554 45778888877665
No 40
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=98.08 E-value=0.0072 Score=66.80 Aligned_cols=189 Identities=13% Similarity=0.105 Sum_probs=112.2
Q ss_pred CCCEEEEEeCCCEEEEEECcCCccceEEEcCcccceeeeeeeeCCEEEEEEccCCeEEEEeCCCCcEeEEEeccCccccC
Q 003800 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSK 131 (794)
Q Consensus 52 ~~~~Vyv~t~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~l~~~~~s~ 131 (794)
+++.+++++.+|.|...|.++|+.+++..-. ...+..+....++ .++.++.++.++.||..+|+.+.......... .
T Consensus 131 ~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h-~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v-~ 207 (464)
T 3v7d_B 131 EDNYVITGADDKMIRVYDSINKKFLLQLSGH-DGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTV-R 207 (464)
T ss_dssp ETTEEEEEETTSCEEEEETTTTEEEEEECCC-SSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCE-E
T ss_pred CCCEEEEEcCCCcEEEEECCCCcEEEEEeCC-CcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCcc-E
Confidence 3678999999999999999999998886532 2234444222233 55546667899999999999998877554332 1
Q ss_pred CccccccccccccCCeEEE-EE-CCEEEEEECCCCcEEEEEeccC---------------------cceeeeeEEEEecC
Q 003800 132 PLLLVPTNLKVDKDSLILV-SS-KGCLHAVSSIDGEILWTRDFAA---------------------ESVEVQQVIQLDES 188 (794)
Q Consensus 132 ~~~~~~~~~~~~~~~~V~V-~~-~g~l~ald~~tG~~~W~~~~~~---------------------~~~~~~~~v~s~~~ 188 (794)
.+.+. ...++..++ .+ +|.+...|..++.......... .......+ +..+
T Consensus 208 ~l~~~-----~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~ 280 (464)
T 3v7d_B 208 CLDIV-----EYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHG 280 (464)
T ss_dssp EEEEE-----ESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEET
T ss_pred EEEEe-----cCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCC
Confidence 11111 111333333 43 8889999988887554322110 00001111 2345
Q ss_pred CEEEEEEecCCceeEEEEEEcCCCceeeeeeeecccCccCceEEE-cCcEEEEEECCCCeEEEEEeecce
Q 003800 189 DQIYVVGYAGSSQFHAYQINAMNGELLNHETAAFSGGFVGDVALV-SSDTLVTLDTTRSILVTVSFKNRK 257 (794)
Q Consensus 189 ~~vyv~~~~g~~~~~v~ald~~tG~~~w~~~v~~~~~~s~~~~~v-g~~~lv~~d~~~g~L~v~~l~sg~ 257 (794)
..++..+.+| .+..+|..+|+.+...... ...+.. +.+- .++.+++.. .+|.+++-|+.+++
T Consensus 281 ~~l~~~~~d~----~i~vwd~~~~~~~~~~~~~-~~~v~~-~~~~~~~~~l~sg~-~dg~i~vwd~~~~~ 343 (464)
T 3v7d_B 281 NIVVSGSYDN----TLIVWDVAQMKCLYILSGH-TDRIYS-TIYDHERKRCISAS-MDTTIRIWDLENGE 343 (464)
T ss_dssp TEEEEEETTS----CEEEEETTTTEEEEEECCC-SSCEEE-EEEETTTTEEEEEE-TTSCEEEEETTTTE
T ss_pred CEEEEEeCCC----eEEEEECCCCcEEEEecCC-CCCEEE-EEEcCCCCEEEEEe-CCCcEEEEECCCCc
Confidence 5566555455 6888999999988765311 111211 2222 345666665 46889999999887
No 41
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=98.06 E-value=0.0044 Score=68.47 Aligned_cols=182 Identities=9% Similarity=0.074 Sum_probs=122.4
Q ss_pred CCEEEEEeCCCEEEEEECcCCccceEEEcCcccceeeeeeeeCCEEEEEEccCCeEEEEeCCCCcEeEEEeccCccccCC
Q 003800 53 RKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKP 132 (794)
Q Consensus 53 ~~~Vyv~t~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~l~~~~~s~~ 132 (794)
++.+++++.+|.|...|.++|+.++...-... .+..+. ..+..++.++.++.++.||..+|+.+++........
T Consensus 209 ~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~-~v~~~~--~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v--- 282 (445)
T 2ovr_B 209 EKRVVSGSRDATLRVWDIETGQCLHVLMGHVA-AVRCVQ--YDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRV--- 282 (445)
T ss_dssp TTEEEEEETTSEEEEEESSSCCEEEEEECCSS-CEEEEE--ECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCE---
T ss_pred CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcc-cEEEEE--ECCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCce---
Confidence 67899999999999999999999887654332 344442 244455556666799999999999999887544322
Q ss_pred ccccccccccccCCeEEEEE-CCEEEEEECCCCcEEEEEeccCcceeeeeEEEEecCCEEEEEEecCCceeEEEEEEcCC
Q 003800 133 LLLVPTNLKVDKDSLILVSS-KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMN 211 (794)
Q Consensus 133 ~~~~~~~~~~~~~~~V~V~~-~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~s~~~~~vyv~~~~g~~~~~v~ald~~t 211 (794)
..+ ..+ +..+++.+ +|.+...|..+|+..++........ ..+ ...++.++..+.+| .+..+|..+
T Consensus 283 -~~~----~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v--~~~--~~~~~~l~~~~~dg----~i~vwd~~~ 348 (445)
T 2ovr_B 283 -YSL----QFD-GIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLT--SGM--ELKDNILVSGNADS----TVKIWDIKT 348 (445)
T ss_dssp -EEE----EEC-SSEEEEEETTSCEEEEETTTCCEEEEECCCCSCE--EEE--EEETTEEEEEETTS----CEEEEETTT
T ss_pred -EEE----EEC-CCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccE--EEE--EEeCCEEEEEeCCC----eEEEEECCC
Confidence 111 122 34455554 9999999999999998886543322 122 23566666555555 688899999
Q ss_pred CceeeeeeeecccCccC--ceEEEcCcEEEEEECCCCeEEEEEeecce
Q 003800 212 GELLNHETAAFSGGFVG--DVALVSSDTLVTLDTTRSILVTVSFKNRK 257 (794)
Q Consensus 212 G~~~w~~~v~~~~~~s~--~~~~vg~~~lv~~d~~~g~L~v~~l~sg~ 257 (794)
|+.+....... .-.. .++-..++.+++.. .+|.+.+-++.+++
T Consensus 349 ~~~~~~~~~~~--~~~~~v~~~~~~~~~l~s~~-~dg~v~iwd~~~~~ 393 (445)
T 2ovr_B 349 GQCLQTLQGPN--KHQSAVTCLQFNKNFVITSS-DDGTVKLWDLKTGE 393 (445)
T ss_dssp CCEEEEECSTT--SCSSCEEEEEECSSEEEEEE-TTSEEEEEETTTCC
T ss_pred CcEEEEEccCC--CCCCCEEEEEECCCEEEEEe-CCCeEEEEECCCCc
Confidence 99887664211 1111 12223556776665 46899999999987
No 42
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=98.05 E-value=0.0024 Score=66.51 Aligned_cols=188 Identities=10% Similarity=0.074 Sum_probs=113.9
Q ss_pred CCCEEEEEeCCCEEEEEECcCCccceEEEcCcc-cceeeeeeeeCCEEEEEEccCCeEEEEeCCCCcEeEEEeccCcccc
Q 003800 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVLGIN-DVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHS 130 (794)
Q Consensus 52 ~~~~Vyv~t~~g~l~ALn~~tG~ivWR~~l~~~-~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~l~~~~~s 130 (794)
+++.+++++.+|.|...|.++++......+... ..+..+.....+..+++++.++.++.||..+|+.+..........
T Consensus 108 ~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i- 186 (337)
T 1gxr_A 108 DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGA- 186 (337)
T ss_dssp TSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCE-
T ss_pred CCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCce-
Confidence 456789999999999999999986555554433 223333223344455556666799999999999998887544322
Q ss_pred CCccccccccccccCCeEEEEE-CCEEEEEECCCCcEEEEEeccCcceeeeeEEEEecCCEEEEEEecCCceeEEEEEEc
Q 003800 131 KPLLLVPTNLKVDKDSLILVSS-KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINA 209 (794)
Q Consensus 131 ~~~~~~~~~~~~~~~~~V~V~~-~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~s~~~~~vyv~~~~g~~~~~v~ald~ 209 (794)
..+.+.+ + +..+++.+ +|.+...|..+|+.........+. ..+..+..+..+++.+.+| .+..+|.
T Consensus 187 ~~~~~~~-----~-~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~v---~~~~~s~~~~~l~~~~~~~----~i~~~~~ 253 (337)
T 1gxr_A 187 SCIDISN-----D-GTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQI---FSLGYCPTGEWLAVGMESS----NVEVLHV 253 (337)
T ss_dssp EEEEECT-----T-SSEEEEEETTSEEEEEETTTTEEEEEEECSSCE---EEEEECTTSSEEEEEETTS----CEEEEET
T ss_pred EEEEECC-----C-CCEEEEEecCCcEEEEECCCCceEeeecCCCce---EEEEECCCCCEEEEEcCCC----cEEEEEC
Confidence 1111111 2 33444444 999999999999999888755432 2232223344444443344 6888999
Q ss_pred CCCceeeeeeeecccCccCceEEE-cCcEEEEEECCCCeEEEEEeecce
Q 003800 210 MNGELLNHETAAFSGGFVGDVALV-SSDTLVTLDTTRSILVTVSFKNRK 257 (794)
Q Consensus 210 ~tG~~~w~~~v~~~~~~s~~~~~v-g~~~lv~~d~~~g~L~v~~l~sg~ 257 (794)
.+++..... .....+. .+.+. .+..+++.. .+|.+++.++.+++
T Consensus 254 ~~~~~~~~~--~~~~~v~-~~~~~~~~~~l~~~~-~dg~i~~~~~~~~~ 298 (337)
T 1gxr_A 254 NKPDKYQLH--LHESCVL-SLKFAYCGKWFVSTG-KDNLLNAWRTPYGA 298 (337)
T ss_dssp TSSCEEEEC--CCSSCEE-EEEECTTSSEEEEEE-TTSEEEEEETTTCC
T ss_pred CCCCeEEEc--CCcccee-EEEECCCCCEEEEec-CCCcEEEEECCCCe
Confidence 988764221 1111121 12222 345666665 46889999998877
No 43
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.01 E-value=0.00075 Score=70.27 Aligned_cols=153 Identities=16% Similarity=0.159 Sum_probs=105.9
Q ss_pred CCEEEEEeCC---CEEEEEECcCCccceEEEcCcccceeeeeeeeCCEEEEEEccCCeEEEEeCCCCcEeEEEeccCccc
Q 003800 53 RKRVVVSTEE---NVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKH 129 (794)
Q Consensus 53 ~~~Vyv~t~~---g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~l~~~~~ 129 (794)
++++|+++.. +.|..+|++||+++=+..++...-..++. ..++.+..++-.++.+..+|++|++++=+....++..
T Consensus 52 ~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit-~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~eG~ 130 (262)
T 3nol_A 52 NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGIS-DWKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDGEGW 130 (262)
T ss_dssp TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEE-EETTEEEEEESSSSEEEEEETTTCCEEEEEECSSCCC
T ss_pred CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEE-EeCCEEEEEEeeCCEEEEEECccCcEEEEEECCCCce
Confidence 6799999974 38999999999999998886542112341 2455444445456899999999999999998865432
Q ss_pred cCCccccccccccccCCeEEEEE-CCEEEEEECCCCcEEEEEeccCccee---eeeEEEEecCCEEEEEEecCCceeEEE
Q 003800 130 SKPLLLVPTNLKVDKDSLILVSS-KGCLHAVSSIDGEILWTRDFAAESVE---VQQVIQLDESDQIYVVGYAGSSQFHAY 205 (794)
Q Consensus 130 s~~~~~~~~~~~~~~~~~V~V~~-~g~l~ald~~tG~~~W~~~~~~~~~~---~~~~v~s~~~~~vyv~~~~g~~~~~v~ 205 (794)
.+. .+ ++.+++.. +++|+-+|++|++++=+.+....... +-.+- ..++.+|+...... .++
T Consensus 131 ----glt-----~d-g~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe--~~~G~lyan~w~~~---~I~ 195 (262)
T 3nol_A 131 ----GLT-----HN-DQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELE--WVDGEIFANVWQTN---KIV 195 (262)
T ss_dssp ----CEE-----EC-SSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEE--EETTEEEEEETTSS---EEE
T ss_pred ----EEe-----cC-CCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeE--EECCEEEEEEccCC---eEE
Confidence 122 22 34556653 67899999999998866655421110 11121 24789998665544 899
Q ss_pred EEEcCCCceeeeeeee
Q 003800 206 QINAMNGELLNHETAA 221 (794)
Q Consensus 206 ald~~tG~~~w~~~v~ 221 (794)
.+|++||+++-...++
T Consensus 196 vIDp~tG~V~~~Id~~ 211 (262)
T 3nol_A 196 RIDPETGKVTGIIDLN 211 (262)
T ss_dssp EECTTTCBEEEEEECT
T ss_pred EEECCCCcEEEEEECC
Confidence 9999999999777653
No 44
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=98.00 E-value=0.001 Score=69.99 Aligned_cols=138 Identities=9% Similarity=0.015 Sum_probs=80.5
Q ss_pred eeecccccEeeEEeccC--ceeeeeeeeeccCCCEEEEEe-CCCEEEEEECcCCccceEEEcCcc-----cceeeeeeee
Q 003800 23 LYEDQVGLMDWHQQYIG--KVKHAVFHTQKTGRKRVVVST-EENVIASLDLRHGEIFWRHVLGIN-----DVVDGIDIAL 94 (794)
Q Consensus 23 l~edqvG~~dW~~~~vG--~~~~~~f~~~~~~~~~Vyv~t-~~g~l~ALn~~tG~ivWR~~l~~~-----~~i~~l~~~~ 94 (794)
++.-+.|+..++...-+ .+....|. .+++.+|+++ .++.|..+|+++|+++++..+... ..+.++....
T Consensus 25 ~~d~~~~~~~~~~~~~~~~~~~~~~~s---~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~sp 101 (349)
T 1jmx_B 25 VVDVASDTVYKSCVMPDKFGPGTAMMA---PDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISP 101 (349)
T ss_dssp EEETTTTEEEEEEECSSCCSSCEEEEC---TTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECT
T ss_pred EEECCCCcEEEEEecCCCCCCceeEEC---CCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECC
Confidence 44445566655555422 23333332 3355688776 578999999999999999887542 1122332233
Q ss_pred CCEEEEEEcc------------CCeEEEEeCCCCcEeE---EEeccCccccCCccccccccccccCCeEEEEECCEEEEE
Q 003800 95 GKYVITLSSD------------GSTLRAWNLPDGQMVW---ESFLRGSKHSKPLLLVPTNLKVDKDSLILVSSKGCLHAV 159 (794)
Q Consensus 95 g~~~V~Vs~~------------g~~v~A~d~~tG~llW---e~~l~~~~~s~~~~~~~~~~~~~~~~~V~V~~~g~l~al 159 (794)
++..++++.. ++.++.||..+|+..- ........ ..+ ....++.+++ .++.++.+
T Consensus 102 dg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~--~~~-------~~s~dg~l~~-~~~~i~~~ 171 (349)
T 1jmx_B 102 DGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQV--YLM-------RAADDGSLYV-AGPDIYKM 171 (349)
T ss_dssp TSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSC--CCE-------EECTTSCEEE-ESSSEEEE
T ss_pred CCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcc--cce-------eECCCCcEEE-ccCcEEEE
Confidence 4445555542 3799999999965432 22222111 111 1122444655 45559999
Q ss_pred ECCCCcEEEEEecc
Q 003800 160 SSIDGEILWTRDFA 173 (794)
Q Consensus 160 d~~tG~~~W~~~~~ 173 (794)
|..+|++.+.....
T Consensus 172 d~~~~~~~~~~~~~ 185 (349)
T 1jmx_B 172 DVKTGKYTVALPLR 185 (349)
T ss_dssp CTTTCCEEEEECST
T ss_pred eCCCCceecccccc
Confidence 99999998877544
No 45
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=98.00 E-value=0.021 Score=59.68 Aligned_cols=192 Identities=12% Similarity=0.099 Sum_probs=111.3
Q ss_pred CCEEEEEe-CCCEEEEEECcCCccceEEEcCcccceeeeeeeeCCEEEEEE-ccCCeEEEEeCCCCcE-eEEEeccCccc
Q 003800 53 RKRVVVST-EENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLS-SDGSTLRAWNLPDGQM-VWESFLRGSKH 129 (794)
Q Consensus 53 ~~~Vyv~t-~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs-~~g~~v~A~d~~tG~l-lWe~~l~~~~~ 129 (794)
.+++|++. .++.|..+|+++|++..+...+... . .+....++..++++ ..++.|+.||..+|++ ...........
T Consensus 9 ~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~-~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~ 86 (331)
T 3u4y_A 9 SNFGIVVEQHLRRISFFSTDTLEILNQITLGYDF-V-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSM 86 (331)
T ss_dssp CCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCE-E-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCC
T ss_pred CCEEEEEecCCCeEEEEeCcccceeeeEEccCCc-c-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCc
Confidence 56777665 4789999999999998888765432 2 33233344445554 4467999999999998 65555443322
Q ss_pred cCCccccccccccccCCeEEEEEC--C--EEEEEECCCCcEEEEEeccCcceeeeeEEEEecCCEEEEEEecCCceeEEE
Q 003800 130 SKPLLLVPTNLKVDKDSLILVSSK--G--CLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAY 205 (794)
Q Consensus 130 s~~~~~~~~~~~~~~~~~V~V~~~--g--~l~ald~~tG~~~W~~~~~~~~~~~~~~v~s~~~~~vyv~~~~g~~~~~v~ 205 (794)
..+.+. .+ ++.+++..+ + .+..+|..+|+.+........ +..+..+.++..+|+.+..++..+.++
T Consensus 87 -~~~~~s-----~d-g~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~---~~~~~~spdg~~l~~~~~~~~~~i~~~ 156 (331)
T 3u4y_A 87 -ADVDIT-----PD-DQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYD---AVGIAISPNGNGLILIDRSSANTVRRF 156 (331)
T ss_dssp -CCEEEC-----TT-SSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTT---EEEEEECTTSSCEEEEEETTTTEEEEE
T ss_pred -cceEEC-----CC-CCEEEEecCCCCcccEEEEECCCCCeEEEEECCCC---ccceEECCCCCEEEEEecCCCceEEEE
Confidence 102121 12 345664433 3 999999999998887665432 233432334446887665543225556
Q ss_pred EEEcCCCceeeeeeeecccCcc-CceEEE-cCcEEEEEECCCCeEEEEEeecce
Q 003800 206 QINAMNGELLNHETAAFSGGFV-GDVALV-SSDTLVTLDTTRSILVTVSFKNRK 257 (794)
Q Consensus 206 ald~~tG~~~w~~~v~~~~~~s-~~~~~v-g~~~lv~~d~~~g~L~v~~l~sg~ 257 (794)
.++ ..|..........+.+.. ..+.+- .++.+++.+...+.+.+.|+.+++
T Consensus 157 ~~~-~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~ 209 (331)
T 3u4y_A 157 KID-ADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPE 209 (331)
T ss_dssp EEC-TTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTT
T ss_pred EEC-CCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCc
Confidence 555 234443321111111111 122222 334566666667889999999887
No 46
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=97.98 E-value=0.014 Score=67.76 Aligned_cols=221 Identities=9% Similarity=-0.039 Sum_probs=118.9
Q ss_pred ceeecccccEeeEEeccCceeeeeeeeeccCCCEEEEEeCCCEEEEEECc--CCccceEEEcCcccceeeeeee----eC
Q 003800 22 SLYEDQVGLMDWHQQYIGKVKHAVFHTQKTGRKRVVVSTEENVIASLDLR--HGEIFWRHVLGINDVVDGIDIA----LG 95 (794)
Q Consensus 22 Al~edqvG~~dW~~~~vG~~~~~~f~~~~~~~~~Vyv~t~~g~l~ALn~~--tG~ivWR~~l~~~~~i~~l~~~----~g 95 (794)
.++..+.+++..+...-..|.... .+.+++.+|+++++|.|..+|.. +++++.+...... ..++... -+
T Consensus 180 ~viD~~t~~v~~~i~~g~~p~~v~---~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~--P~~ia~s~~~~pD 254 (567)
T 1qks_A 180 ALIDGSTYEIKTVLDTGYAVHISR---LSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSE--ARSIETSKMEGWE 254 (567)
T ss_dssp EEEETTTCCEEEEEECSSCEEEEE---ECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSE--EEEEEECCSTTCT
T ss_pred EEEECCCCeEEEEEeCCCCccceE---ECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCC--CceeEEccccCCC
Confidence 345555666666655422222222 33457789999999999999996 9999988766443 2234333 13
Q ss_pred CEEEEEEc-cCCeEEEEeCCCCcEeEEEeccCccccC-----CccccccccccccCCeEEEE---ECCEEEEEECCCCcE
Q 003800 96 KYVITLSS-DGSTLRAWNLPDGQMVWESFLRGSKHSK-----PLLLVPTNLKVDKDSLILVS---SKGCLHAVSSIDGEI 166 (794)
Q Consensus 96 ~~~V~Vs~-~g~~v~A~d~~tG~llWe~~l~~~~~s~-----~~~~~~~~~~~~~~~~V~V~---~~g~l~ald~~tG~~ 166 (794)
+..++++. .++.+..+|..|++++....+.+..... .+.+... ....++..++. ..|++..+|..+.+.
T Consensus 255 Gk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i--~~s~~~~~~vv~~~~~g~v~~vd~~~~~~ 332 (567)
T 1qks_A 255 DKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAI--LASHYRPEFIVNVKETGKILLVDYTDLNN 332 (567)
T ss_dssp TTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEE--EECSSSSEEEEEETTTTEEEEEETTCSSE
T ss_pred CCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEE--EEcCCCCEEEEEecCCCeEEEEecCCCcc
Confidence 44666654 4689999999999999998875421100 0000000 00001222222 267777777766532
Q ss_pred --EEEEeccCcceeeeeEEEEecCCEEEEEEecCCceeEEEEEEcCCCceeeeeee-e-cccCccCceEEE-c-CcEEEE
Q 003800 167 --LWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETA-A-FSGGFVGDVALV-S-SDTLVT 240 (794)
Q Consensus 167 --~W~~~~~~~~~~~~~~v~s~~~~~vyv~~~~g~~~~~v~ald~~tG~~~w~~~v-~-~~~~~s~~~~~v-g-~~~lv~ 240 (794)
..+... ... +.......++..+|+.+...+ ++..+|.++|++++...+ . .|..-.+.-++- . +.+++.
T Consensus 333 ~~v~~i~~--~~~-~~d~~~~pdgr~~~va~~~sn---~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t 406 (567)
T 1qks_A 333 LKTTEISA--ERF-LHDGGLDGSHRYFITAANARN---KLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWAT 406 (567)
T ss_dssp EEEEEEEC--CSS-EEEEEECTTSCEEEEEEGGGT---EEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEE
T ss_pred ceeeeeec--ccc-ccCceECCCCCEEEEEeCCCC---eEEEEECCCCcEEEEEeccCcCCCCccceeeECCCCCcEEEe
Confidence 122211 111 111211223444555443333 788899999999887765 2 232212211221 1 223332
Q ss_pred EECCCCeEEEEEeec
Q 003800 241 LDTTRSILVTVSFKN 255 (794)
Q Consensus 241 ~d~~~g~L~v~~l~s 255 (794)
.....+.+.+++..+
T Consensus 407 ~~~g~~~Vsvid~~~ 421 (567)
T 1qks_A 407 SHMGDDSVALIGTDP 421 (567)
T ss_dssp EBSSSSEEEEEECCT
T ss_pred CCCCCCeEEEecCCC
Confidence 333346788888776
No 47
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=97.97 E-value=0.002 Score=66.34 Aligned_cols=153 Identities=16% Similarity=0.138 Sum_probs=107.1
Q ss_pred CCEEEEEeCC---CEEEEEECcCCccceEEEcCcccceeeeeeeeCCEEEEEEccCCeEEEEeCCCCcEeEEEeccCccc
Q 003800 53 RKRVVVSTEE---NVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKH 129 (794)
Q Consensus 53 ~~~Vyv~t~~---g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~l~~~~~ 129 (794)
++++|++|.. +.|..+|++||+++=+..++...-..++ ...++.+..++-..+.+..+|++|++++=+.+..++..
T Consensus 30 ~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi-~~~~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~Gw 108 (243)
T 3mbr_X 30 RGHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGI-VAWRDRLIQLTWRNHEGFVYDLATLTPRARFRYPGEGW 108 (243)
T ss_dssp TTEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEE-EEETTEEEEEESSSSEEEEEETTTTEEEEEEECSSCCC
T ss_pred CCEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEE-EEeCCEEEEEEeeCCEEEEEECCcCcEEEEEeCCCCce
Confidence 6899999986 5999999999999988888655211233 12455444445456899999999999999998865432
Q ss_pred cCCccccccccccccCCeEEEE-ECCEEEEEECCCCcEEEEEeccCccee---eeeEEEEecCCEEEEEEecCCceeEEE
Q 003800 130 SKPLLLVPTNLKVDKDSLILVS-SKGCLHAVSSIDGEILWTRDFAAESVE---VQQVIQLDESDQIYVVGYAGSSQFHAY 205 (794)
Q Consensus 130 s~~~~~~~~~~~~~~~~~V~V~-~~g~l~ald~~tG~~~W~~~~~~~~~~---~~~~v~s~~~~~vyv~~~~g~~~~~v~ 205 (794)
.+ ..+ ++.+++. .+++|+.+|++|.+++=+.+....... +-.+ ...++.+|+...... .+.
T Consensus 109 ----gl-----t~d-g~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeL--e~~~G~lyanvw~s~---~I~ 173 (243)
T 3mbr_X 109 ----AL-----TSD-DSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNEL--EWVNGELLANVWLTS---RIA 173 (243)
T ss_dssp ----EE-----EEC-SSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEE--EEETTEEEEEETTTT---EEE
T ss_pred ----EE-----eeC-CCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceee--EEeCCEEEEEECCCC---eEE
Confidence 12 222 4556666 478999999999998766655432110 1112 135889997664444 899
Q ss_pred EEEcCCCceeeeeeee
Q 003800 206 QINAMNGELLNHETAA 221 (794)
Q Consensus 206 ald~~tG~~~w~~~v~ 221 (794)
.+|++||+++-...++
T Consensus 174 vIDp~tG~V~~~idl~ 189 (243)
T 3mbr_X 174 RIDPASGKVVAWIDLQ 189 (243)
T ss_dssp EECTTTCBEEEEEECG
T ss_pred EEECCCCCEEEEEECC
Confidence 9999999999887654
No 48
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=97.96 E-value=0.006 Score=66.16 Aligned_cols=189 Identities=10% Similarity=-0.018 Sum_probs=111.1
Q ss_pred CCEEEEEeCCCEEEEEECcCCccceEEEcCcccceeeeeeeeCCEEEEEEccCCeEEEEeCCCCcEeEEEeccCccccCC
Q 003800 53 RKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKP 132 (794)
Q Consensus 53 ~~~Vyv~t~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~l~~~~~s~~ 132 (794)
+..+++++.+|.+...|..+++........ ...........+..++.++.++.++.||..+|+............ ..
T Consensus 68 g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v-~~ 144 (420)
T 3vl1_A 68 GSHLYKARLDGHDFLFNTIIRDGSKMLKRA--DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEI-TK 144 (420)
T ss_dssp ETTEEEEEETTEEEEEECCSEETTTTSCSC--CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCE-EE
T ss_pred CCeEEEEEcCCcEEEEEecccceeeEEecC--CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCcc-EE
Confidence 556999999999999999998765443222 111111112344455556666799999999998876544333222 11
Q ss_pred ccccccccccccCCeEEEEE-CCEEEEEECCCCcEEEEEeccCcceeeeeEEEEecCCEEEEEEecCCceeEEEEEEcCC
Q 003800 133 LLLVPTNLKVDKDSLILVSS-KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMN 211 (794)
Q Consensus 133 ~~~~~~~~~~~~~~~V~V~~-~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~s~~~~~vyv~~~~g~~~~~v~ald~~t 211 (794)
+.+.+ + +..++..+ ++.+...|..+|+...++....... ..+..+..+..++..+.+| .+..+|..+
T Consensus 145 ~~~~~-----~-~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v--~~~~~~~~~~~l~s~~~d~----~v~iwd~~~ 212 (420)
T 3vl1_A 145 LKFFP-----S-GEALISSSQDMQLKIWSVKDGSNPRTLIGHRATV--TDIAIIDRGRNVLSASLDG----TIRLWECGT 212 (420)
T ss_dssp EEECT-----T-SSEEEEEETTSEEEEEETTTCCCCEEEECCSSCE--EEEEEETTTTEEEEEETTS----CEEEEETTT
T ss_pred EEECC-----C-CCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcE--EEEEEcCCCCEEEEEcCCC----cEEEeECCC
Confidence 11211 1 23344444 8999999999998887775433322 2232233445555555455 688899999
Q ss_pred Cceeeeeeeecc--cCccCceE--------------------E-EcCcEEEEEECCCCeEEEEEeecce
Q 003800 212 GELLNHETAAFS--GGFVGDVA--------------------L-VSSDTLVTLDTTRSILVTVSFKNRK 257 (794)
Q Consensus 212 G~~~w~~~v~~~--~~~s~~~~--------------------~-vg~~~lv~~d~~~g~L~v~~l~sg~ 257 (794)
|+.+........ ..+..-.+ + ..+..+++.. ..|.+++.|+.+++
T Consensus 213 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~ 280 (420)
T 3vl1_A 213 GTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGH-VSGVITVHNVFSKE 280 (420)
T ss_dssp TEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEE-TTSCEEEEETTTCC
T ss_pred CceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEc-CCCeEEEEECCCCc
Confidence 998877643211 11100000 0 1233555555 46889999998876
No 49
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=97.95 E-value=0.00039 Score=72.50 Aligned_cols=153 Identities=14% Similarity=0.114 Sum_probs=106.8
Q ss_pred CCCEEEEEeCC-CEEEEEECcCCccceEEEcCcccceeeeeeeeCCEEEEEEccCCeEEEEeCCCCcEeEEEeccCcccc
Q 003800 52 GRKRVVVSTEE-NVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHS 130 (794)
Q Consensus 52 ~~~~Vyv~t~~-g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~l~~~~~s 130 (794)
+++++|+++.. |.|..+|++||+++-+. ++...-..++. ..++.+..++-.++.+..+|++|++++=+....++..
T Consensus 63 ~~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit-~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~eGw- 139 (268)
T 3nok_A 63 HQGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLA-SDGERLYQLTWTEGLLFTWSGMPPQRERTTRYSGEGW- 139 (268)
T ss_dssp ETTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEE-ECSSCEEEEESSSCEEEEEETTTTEEEEEEECSSCCC-
T ss_pred ECCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEE-EeCCEEEEEEccCCEEEEEECCcCcEEEEEeCCCcee-
Confidence 37899999975 78999999999999998 76541112341 2344444445456899999999999999998765432
Q ss_pred CCccccccccccccCCeEEEEE-CCEEEEEECCCCcEEEEEeccCccee---eeeEEEEecCCEEEEEEecCCceeEEEE
Q 003800 131 KPLLLVPTNLKVDKDSLILVSS-KGCLHAVSSIDGEILWTRDFAAESVE---VQQVIQLDESDQIYVVGYAGSSQFHAYQ 206 (794)
Q Consensus 131 ~~~~~~~~~~~~~~~~~V~V~~-~g~l~ald~~tG~~~W~~~~~~~~~~---~~~~v~s~~~~~vyv~~~~g~~~~~v~a 206 (794)
.+ ..+ ++.+++.. +++|+-+|++|++++=+.+....... +-.+- ..++.+|+...... .+..
T Consensus 140 ---GL-----t~D-g~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe--~~dG~lyanvw~s~---~I~v 205 (268)
T 3nok_A 140 ---GL-----CYW-NGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELE--CANGVIYANIWHSS---DVLE 205 (268)
T ss_dssp ---CE-----EEE-TTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEE--EETTEEEEEETTCS---EEEE
T ss_pred ---EE-----ecC-CCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccE--EeCCEEEEEECCCC---eEEE
Confidence 12 223 45666663 78999999999998866655432211 11121 24789997665444 8999
Q ss_pred EEcCCCceeeeeeee
Q 003800 207 INAMNGELLNHETAA 221 (794)
Q Consensus 207 ld~~tG~~~w~~~v~ 221 (794)
+|++||+.+-...++
T Consensus 206 IDp~TG~V~~~Idl~ 220 (268)
T 3nok_A 206 IDPATGTVVGVIDAS 220 (268)
T ss_dssp ECTTTCBEEEEEECH
T ss_pred EeCCCCcEEEEEECC
Confidence 999999999877654
No 50
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=97.94 E-value=0.012 Score=63.96 Aligned_cols=188 Identities=11% Similarity=0.003 Sum_probs=117.2
Q ss_pred CCEEEEEeCCCEEEEEECcCCccceEEEcCcccceeeeeeeeCCEEEEEEccCCeEEEEeCCCCcEeEEEeccCccccCC
Q 003800 53 RKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKP 132 (794)
Q Consensus 53 ~~~Vyv~t~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~l~~~~~s~~ 132 (794)
.+.+++++.+|.|.-.|..+|+............+..+.....+..+++++.++.++.||..+|+.+.+........
T Consensus 103 ~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v--- 179 (401)
T 4aez_A 103 NLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARV--- 179 (401)
T ss_dssp TTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCE---
T ss_pred CCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCce---
Confidence 45688999999999999999999888777544445544333344566656666799999999999998877544322
Q ss_pred ccccccccccccCCeEEEEE-CCEEEEEECC-CCcEEEEEeccCcceeeeeEEEEecCCEEEEEEecCCceeEEEEEEcC
Q 003800 133 LLLVPTNLKVDKDSLILVSS-KGCLHAVSSI-DGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAM 210 (794)
Q Consensus 133 ~~~~~~~~~~~~~~~V~V~~-~g~l~ald~~-tG~~~W~~~~~~~~~~~~~~v~s~~~~~vyv~~~~g~~~~~v~ald~~ 210 (794)
..+ ..+ ++.++..+ +|.+...|.. .+............. ..+..+..+..++..+.+| .+..+|..
T Consensus 180 -~~~----~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~s~~~d~----~v~iwd~~ 247 (401)
T 4aez_A 180 -GCL----SWN-RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEV--CGLAWRSDGLQLASGGNDN----VVQIWDAR 247 (401)
T ss_dssp -EEE----EEE-TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCE--EEEEECTTSSEEEEEETTS----CEEEEETT
T ss_pred -EEE----EEC-CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCe--eEEEEcCCCCEEEEEeCCC----eEEEccCC
Confidence 111 222 34444444 8999999998 455666655433322 2222122333444444344 68889999
Q ss_pred CCceeeeeeeecccCccCceEEE--cCcEEEEEE-CCCCeEEEEEeecce
Q 003800 211 NGELLNHETAAFSGGFVGDVALV--SSDTLVTLD-TTRSILVTVSFKNRK 257 (794)
Q Consensus 211 tG~~~w~~~v~~~~~~s~~~~~v--g~~~lv~~d-~~~g~L~v~~l~sg~ 257 (794)
+++.+....-. ...+. .+.+. +..++++.. ...+.+++.|+.+++
T Consensus 248 ~~~~~~~~~~~-~~~v~-~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~ 295 (401)
T 4aez_A 248 SSIPKFTKTNH-NAAVK-AVAWCPWQSNLLATGGGTMDKQIHFWNAATGA 295 (401)
T ss_dssp CSSEEEEECCC-SSCCC-EEEECTTSTTEEEEECCTTTCEEEEEETTTCC
T ss_pred CCCccEEecCC-cceEE-EEEECCCCCCEEEEecCCCCCEEEEEECCCCC
Confidence 99888765311 11221 12221 334555542 246889999998887
No 51
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=97.93 E-value=0.01 Score=62.15 Aligned_cols=217 Identities=8% Similarity=0.042 Sum_probs=116.0
Q ss_pred ceeecccccEeeEEeccCceeeeeeeeeccCCCEEEEEeC-CCEEEEEECcCCcc-ceEEEcCcccceeeeeeeeCCEEE
Q 003800 22 SLYEDQVGLMDWHQQYIGKVKHAVFHTQKTGRKRVVVSTE-ENVIASLDLRHGEI-FWRHVLGINDVVDGIDIALGKYVI 99 (794)
Q Consensus 22 Al~edqvG~~dW~~~~vG~~~~~~f~~~~~~~~~Vyv~t~-~g~l~ALn~~tG~i-vWR~~l~~~~~i~~l~~~~g~~~V 99 (794)
.++..+.|+.......-+.+....| +.+++.+|+++. ++.|..+|+++|++ ......... ...++....++..+
T Consensus 23 ~~~d~~~~~~~~~~~~~~~~~~~~~---s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l 98 (331)
T 3u4y_A 23 SFFSTDTLEILNQITLGYDFVDTAI---TSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQS-SMADVDITPDDQFA 98 (331)
T ss_dssp EEEETTTCCEEEEEECCCCEEEEEE---CSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSS-CCCCEEECTTSSEE
T ss_pred EEEeCcccceeeeEEccCCcceEEE---cCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCC-CccceEECCCCCEE
Confidence 3455556665555443121112222 234556888887 78999999999998 444433322 12213223344455
Q ss_pred EEEccC-C--eEEEEeCCCCcEeEEEeccCccccCCccccccccccccCCeEEEEE--CCE-EEEEECCC-CcEEEEE--
Q 003800 100 TLSSDG-S--TLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSS--KGC-LHAVSSID-GEILWTR-- 170 (794)
Q Consensus 100 ~Vs~~g-~--~v~A~d~~tG~llWe~~l~~~~~s~~~~~~~~~~~~~~~~~V~V~~--~g~-l~ald~~t-G~~~W~~-- 170 (794)
+++..+ + .|+.||..+|+.+.......... .+.+. .+ ++.+++.. ++. +..++... |......
T Consensus 99 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~--~~~~s-----pd-g~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~ 170 (331)
T 3u4y_A 99 VTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAV--GIAIS-----PN-GNGLILIDRSSANTVRRFKIDADGVLFDTGQE 170 (331)
T ss_dssp EECCCSSSSCEEEEEETTTTEEEEEEECCTTEE--EEEEC-----TT-SSCEEEEEETTTTEEEEEEECTTCCEEEEEEE
T ss_pred EEecCCCCcccEEEEECCCCCeEEEEECCCCcc--ceEEC-----CC-CCEEEEEecCCCceEEEEEECCCCcEeecCCc
Confidence 554433 3 89999999999988766543221 11111 12 23466652 355 66555543 3332211
Q ss_pred eccCcceeeeeEEEEecCCEEEEEEecCCceeEEEEEEcCCCce---eeeeeeecccCccCceEEE-cCcEEEEEECCCC
Q 003800 171 DFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGEL---LNHETAAFSGGFVGDVALV-SSDTLVTLDTTRS 246 (794)
Q Consensus 171 ~~~~~~~~~~~~v~s~~~~~vyv~~~~g~~~~~v~ald~~tG~~---~w~~~v~~~~~~s~~~~~v-g~~~lv~~d~~~g 246 (794)
..+... .+..+..+.++..+|+.+..++ .+..+|+.+|+. +.+.. ...... .+.+- .+..++..+...+
T Consensus 171 ~~~~~~-~~~~~~~spdg~~l~v~~~~~~---~v~v~d~~~~~~~~~~~~~~--~~~~~~-~~~~spdg~~l~v~~~~~~ 243 (331)
T 3u4y_A 171 FISGGT-RPFNITFTPDGNFAFVANLIGN---SIGILETQNPENITLLNAVG--TNNLPG-TIVVSRDGSTVYVLTESTV 243 (331)
T ss_dssp EECSSS-SEEEEEECTTSSEEEEEETTTT---EEEEEECSSTTSCEEEEEEE--CSSCCC-CEEECTTSSEEEEECSSEE
T ss_pred cccCCC-CccceEECCCCCEEEEEeCCCC---eEEEEECCCCcccceeeecc--CCCCCc-eEEECCCCCEEEEEEcCCC
Confidence 111111 1334433334445887664433 788899999998 44432 221121 22232 3344555555556
Q ss_pred eEEEEEeecce
Q 003800 247 ILVTVSFKNRK 257 (794)
Q Consensus 247 ~L~v~~l~sg~ 257 (794)
.+.+.|+.+++
T Consensus 244 ~i~~~d~~~~~ 254 (331)
T 3u4y_A 244 DVFNFNQLSGT 254 (331)
T ss_dssp EEEEEETTTTE
T ss_pred EEEEEECCCCc
Confidence 78999998887
No 52
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=97.87 E-value=0.033 Score=58.39 Aligned_cols=190 Identities=9% Similarity=0.015 Sum_probs=107.3
Q ss_pred CCCEEEEEeCCCEEEEEECcCCccceEEEcCcccceeeeeeeeCCEEEEEEccCCeEEEEeCCCCcEeEEEeccCccccC
Q 003800 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSK 131 (794)
Q Consensus 52 ~~~~Vyv~t~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~l~~~~~s~ 131 (794)
+++.+++++.+|.|...|..+|+.+.+..-... .+..+.....+..++.++.++.|+.||..+|+.+..........
T Consensus 43 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~-~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~-- 119 (369)
T 3zwl_B 43 EGDLLFSCSKDSSASVWYSLNGERLGTLDGHTG-TIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWKSPVPVK-- 119 (369)
T ss_dssp TSCEEEEEESSSCEEEEETTTCCEEEEECCCSS-CEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSCEE--
T ss_pred CCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCC-cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCeE--
Confidence 466788999999999999999998877643222 34444222334455545556799999999999999988544322
Q ss_pred CccccccccccccCCeEEEEE-C-----CEEEEEECCCCcEEEEEeccC--cce---------eeeeEEEEecCCEEEEE
Q 003800 132 PLLLVPTNLKVDKDSLILVSS-K-----GCLHAVSSIDGEILWTRDFAA--ESV---------EVQQVIQLDESDQIYVV 194 (794)
Q Consensus 132 ~~~~~~~~~~~~~~~~V~V~~-~-----g~l~ald~~tG~~~W~~~~~~--~~~---------~~~~~v~s~~~~~vyv~ 194 (794)
.+.+.+ + +..+++.. + |.+..+|..++.......... +.. ....+..+..+..+++.
T Consensus 120 ~~~~~~-----~-~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 193 (369)
T 3zwl_B 120 RVEFSP-----C-GNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAG 193 (369)
T ss_dssp EEEECT-----T-SSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEE
T ss_pred EEEEcc-----C-CCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEE
Confidence 111211 1 23344433 5 788888877664322221111 100 01112112233445444
Q ss_pred EecCCceeEEEEEEcCC-CceeeeeeeecccCccCceEEE-cCcEEEEEECCCCeEEEEEeecce
Q 003800 195 GYAGSSQFHAYQINAMN-GELLNHETAAFSGGFVGDVALV-SSDTLVTLDTTRSILVTVSFKNRK 257 (794)
Q Consensus 195 ~~~g~~~~~v~ald~~t-G~~~w~~~v~~~~~~s~~~~~v-g~~~lv~~d~~~g~L~v~~l~sg~ 257 (794)
+.+| .+..+|..+ ++.+...... ...+.. +.+. .+..+++.. ..+.+.+.|+.+++
T Consensus 194 ~~dg----~i~i~d~~~~~~~~~~~~~~-~~~v~~-~~~~~~~~~l~~~~-~d~~i~v~d~~~~~ 251 (369)
T 3zwl_B 194 HKDG----KISKYDVSNNYEYVDSIDLH-EKSISD-MQFSPDLTYFITSS-RDTNSFLVDVSTLQ 251 (369)
T ss_dssp ETTS----EEEEEETTTTTEEEEEEECC-SSCEEE-EEECTTSSEEEEEE-TTSEEEEEETTTCC
T ss_pred cCCC----EEEEEECCCCcEeEEEEecC-CCceeE-EEECCCCCEEEEec-CCceEEEEECCCCc
Confidence 4444 788999998 5655544321 111211 1221 334555554 45788889988876
No 53
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=97.87 E-value=0.0095 Score=63.16 Aligned_cols=189 Identities=12% Similarity=0.120 Sum_probs=114.3
Q ss_pred CCCEEEEEeCCCEEEEEECcCCccceEEEcCcccceeeeeeeeCCEEEEEEccCCeEEEEeCCCCcEeEEEeccCccccC
Q 003800 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSK 131 (794)
Q Consensus 52 ~~~~Vyv~t~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~l~~~~~s~ 131 (794)
....++.++.++.|.-.|.++|+.+........ .+..+.....+..++.++.++.++.||..+|+..+......... .
T Consensus 91 ~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~-~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v-~ 168 (321)
T 3ow8_A 91 TLPIAASSSLDAHIRLWDLENGKQIKSIDAGPV-DAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFI-L 168 (321)
T ss_dssp SSSEEEEEETTSEEEEEETTTTEEEEEEECCTT-CCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCE-E
T ss_pred CCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCc-cEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceE-E
Confidence 355688889999999999999998877655432 22223223344455556667899999999999999887654322 1
Q ss_pred CccccccccccccCCeEEEEE-CCEEEEEECCCCcEEEEEeccCcceeeeeEEEEecCCEEEEEEecCCceeEEEEEEcC
Q 003800 132 PLLLVPTNLKVDKDSLILVSS-KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAM 210 (794)
Q Consensus 132 ~~~~~~~~~~~~~~~~V~V~~-~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~s~~~~~vyv~~~~g~~~~~v~ald~~ 210 (794)
.+.+.+ + ++.++..+ +|.+...|..+|+.+-+.+...... ..+..+ .++..++.+...+ .+...|..
T Consensus 169 ~~~~sp-----d-g~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v--~~l~~s-pd~~~l~s~s~dg---~i~iwd~~ 236 (321)
T 3ow8_A 169 SIAYSP-----D-GKYLASGAIDGIINIFDIATGKLLHTLEGHAMPI--RSLTFS-PDSQLLVTASDDG---YIKIYDVQ 236 (321)
T ss_dssp EEEECT-----T-SSEEEEEETTSCEEEEETTTTEEEEEECCCSSCC--CEEEEC-TTSCEEEEECTTS---CEEEEETT
T ss_pred EEEECC-----C-CCEEEEEcCCCeEEEEECCCCcEEEEEcccCCce--eEEEEc-CCCCEEEEEcCCC---eEEEEECC
Confidence 111111 2 23444443 8999999999999887775433221 222212 2344443333322 67888999
Q ss_pred CCceeeeeeeecccCccCceEEE-cCcEEEEEECCCCeEEEEEeecce
Q 003800 211 NGELLNHETAAFSGGFVGDVALV-SSDTLVTLDTTRSILVTVSFKNRK 257 (794)
Q Consensus 211 tG~~~w~~~v~~~~~~s~~~~~v-g~~~lv~~d~~~g~L~v~~l~sg~ 257 (794)
+++......-. ...+. .+.+- .+..++... ..+.+.+-|+.+++
T Consensus 237 ~~~~~~~~~~h-~~~v~-~~~~sp~~~~l~s~s-~D~~v~iwd~~~~~ 281 (321)
T 3ow8_A 237 HANLAGTLSGH-ASWVL-NVAFCPDDTHFVSSS-SDKSVKVWDVGTRT 281 (321)
T ss_dssp TCCEEEEECCC-SSCEE-EEEECTTSSEEEEEE-TTSCEEEEETTTTE
T ss_pred CcceeEEEcCC-CCceE-EEEECCCCCEEEEEe-CCCcEEEEeCCCCE
Confidence 88876543210 11111 11121 344666665 45889999998877
No 54
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=97.85 E-value=0.04 Score=57.24 Aligned_cols=190 Identities=14% Similarity=0.111 Sum_probs=114.1
Q ss_pred CCCEEEEEeCCCEEEEEECcCCccceEEEcCcccceeeeeeeeCCEEEEEEccCCeEEEEeCCCCcEeEEEeccCccccC
Q 003800 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSK 131 (794)
Q Consensus 52 ~~~~Vyv~t~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~l~~~~~s~ 131 (794)
+++.+++++.+|.|.-.|..+|+..-...-. ...+..+.....+..++.++.++.++.||..+|+.+-......... .
T Consensus 34 ~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v-~ 111 (312)
T 4ery_A 34 NGEWLASSSADKLIKIWGAYDGKFEKTISGH-KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV-F 111 (312)
T ss_dssp TSSEEEEEETTSCEEEEETTTCCEEEEECCC-SSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCE-E
T ss_pred CCCEEEEeeCCCeEEEEeCCCcccchhhccC-CCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCE-E
Confidence 4667889999999999999999876543322 2234333222344455556666899999999999988776554322 1
Q ss_pred CccccccccccccCCeEEEEE-CCEEEEEECCCCcEEEEEeccCcceeeeeEEEEecCCEEEEEEecCCceeEEEEEEcC
Q 003800 132 PLLLVPTNLKVDKDSLILVSS-KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAM 210 (794)
Q Consensus 132 ~~~~~~~~~~~~~~~~V~V~~-~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~s~~~~~vyv~~~~g~~~~~v~ald~~ 210 (794)
...+.+ + +..++..+ ++.+...|..+|+............ ..+.....+..++..+.+| .+..+|..
T Consensus 112 ~~~~~~-----~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~~~~~d~----~i~~wd~~ 179 (312)
T 4ery_A 112 CCNFNP-----Q-SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV--SAVHFNRDGSLIVSSSYDG----LCRIWDTA 179 (312)
T ss_dssp EEEECS-----S-SSEEEEEETTSCEEEEETTTCCEEEEECCCSSCE--EEEEECTTSSEEEEEETTS----CEEEEETT
T ss_pred EEEEcC-----C-CCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcE--EEEEEcCCCCEEEEEeCCC----cEEEEECC
Confidence 111111 1 23344443 8999999999999887775543322 2222122334444444444 68889999
Q ss_pred CCceeeeeeeecccCccCceEEE-cCcEEEEEECCCCeEEEEEeecce
Q 003800 211 NGELLNHETAAFSGGFVGDVALV-SSDTLVTLDTTRSILVTVSFKNRK 257 (794)
Q Consensus 211 tG~~~w~~~v~~~~~~s~~~~~v-g~~~lv~~d~~~g~L~v~~l~sg~ 257 (794)
+|+.+..........+.. +.+- .+..+++.. ..+.+++.|+.+++
T Consensus 180 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~-~d~~i~iwd~~~~~ 225 (312)
T 4ery_A 180 SGQCLKTLIDDDNPPVSF-VKFSPNGKYILAAT-LDNTLKLWDYSKGK 225 (312)
T ss_dssp TCCEEEEECCSSCCCEEE-EEECTTSSEEEEEE-TTTEEEEEETTTTE
T ss_pred CCceeeEEeccCCCceEE-EEECCCCCEEEEEc-CCCeEEEEECCCCc
Confidence 998775542111111111 1111 334666665 46889999998877
No 55
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.85 E-value=0.0059 Score=67.36 Aligned_cols=184 Identities=14% Similarity=0.108 Sum_probs=117.6
Q ss_pred CCCEEEEEeCCCEEEEEECcCCccceEEEcCcccceeeeeeeeCCEEEEEEccCCeEEEEeCCCCcEeEEEeccCccccC
Q 003800 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSK 131 (794)
Q Consensus 52 ~~~~Vyv~t~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~l~~~~~s~ 131 (794)
+++.+++++.+|.|...|..+|+..+...-.. ..+..+ ...+..++.++.++.|+.||..+|+.+..........
T Consensus 142 d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~-~~v~~l--~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v-- 216 (435)
T 1p22_A 142 DDQKIVSGLRDNTIKIWDKNTLECKRILTGHT-GSVLCL--QYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAV-- 216 (435)
T ss_dssp CSSEEEEEESSSCEEEEESSSCCEEEEECCCS-SCEEEE--ECCSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCE--
T ss_pred CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCC-CcEEEE--EECCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcE--
Confidence 46779999999999999999999988765322 234444 2345566656667899999999999998877554322
Q ss_pred CccccccccccccCCeEEEEE-CCEEEEEECCCCcEEEEEe-ccCcceeeeeEEEEecCCEEEEEEecCCceeEEEEEEc
Q 003800 132 PLLLVPTNLKVDKDSLILVSS-KGCLHAVSSIDGEILWTRD-FAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINA 209 (794)
Q Consensus 132 ~~~~~~~~~~~~~~~~V~V~~-~g~l~ald~~tG~~~W~~~-~~~~~~~~~~~v~s~~~~~vyv~~~~g~~~~~v~ald~ 209 (794)
..+ ... ++.++..+ +|.+...|..+++...... ..........+ ...+..++..+.+| .+..+|.
T Consensus 217 --~~l----~~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~s~~~dg----~i~vwd~ 283 (435)
T 1p22_A 217 --LHL----RFN-NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVV--DFDDKYIVSASGDR----TIKVWNT 283 (435)
T ss_dssp --EEE----ECC-TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEE--EEETTEEEEEETTS----EEEEEET
T ss_pred --EEE----EEc-CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEE--EeCCCEEEEEeCCC----eEEEEEC
Confidence 111 112 34444444 8999999998887553221 11111111122 23566666655555 7889999
Q ss_pred CCCceeeeeeeecccCccCceEEEcCcEEEEEECCCCeEEEEEeecce
Q 003800 210 MNGELLNHETAAFSGGFVGDVALVSSDTLVTLDTTRSILVTVSFKNRK 257 (794)
Q Consensus 210 ~tG~~~w~~~v~~~~~~s~~~~~vg~~~lv~~d~~~g~L~v~~l~sg~ 257 (794)
.+|+.+.+.... ...+ .++...++.+++.. .+|.+.+.|+.+++
T Consensus 284 ~~~~~~~~~~~~-~~~v--~~~~~~~~~l~~g~-~dg~i~iwd~~~~~ 327 (435)
T 1p22_A 284 STCEFVRTLNGH-KRGI--ACLQYRDRLVVSGS-SDNTIRLWDIECGA 327 (435)
T ss_dssp TTCCEEEEEECC-SSCE--EEEEEETTEEEEEE-TTSCEEEEETTTCC
T ss_pred CcCcEEEEEcCC-CCcE--EEEEeCCCEEEEEe-CCCeEEEEECCCCC
Confidence 999988766421 1111 12223556666666 46889999999887
No 56
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=97.84 E-value=0.029 Score=61.70 Aligned_cols=193 Identities=12% Similarity=0.041 Sum_probs=119.6
Q ss_pred eccCCCEEEEEeC-----CCEEEEEECcCCccceEEEcCcccceeeeeeeeCCEEEEEEc----------cCCeEEEEeC
Q 003800 49 QKTGRKRVVVSTE-----ENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSS----------DGSTLRAWNL 113 (794)
Q Consensus 49 ~~~~~~~Vyv~t~-----~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~----------~g~~v~A~d~ 113 (794)
|.++.+++||++. .+.|..||++|++++.+....... ++.+.-++..+|++. ..+.|..||+
T Consensus 40 ~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P---~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~ 116 (386)
T 3sjl_D 40 PAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP---NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDP 116 (386)
T ss_dssp CCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC---EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred cCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC---cEEECCCCCEEEEEcccccccccCCCCCEEEEEEC
Confidence 4456889999997 579999999999999998876542 233344555666654 2357999999
Q ss_pred CCCcEeEEEeccCcc-c--cCCccccccccccccCCeEEEEE---CCEEEEEECCCCcEEEEEeccCcceeeeeEEEEec
Q 003800 114 PDGQMVWESFLRGSK-H--SKPLLLVPTNLKVDKDSLILVSS---KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDE 187 (794)
Q Consensus 114 ~tG~llWe~~l~~~~-~--s~~~~~~~~~~~~~~~~~V~V~~---~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~s~~ 187 (794)
.+++++-+..+..+. . ...+..+. ...+ ++.+||.. ++.|..+|..+++++-+.+.+... .+. ...
T Consensus 117 ~t~~v~~~I~v~~g~r~~~g~~P~~~a--~spD-Gk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~~----~~~-P~g 188 (386)
T 3sjl_D 117 VTLLPTADIELPDAPRFLVGTYPWMTS--LTPD-GKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCY----HIF-PTA 188 (386)
T ss_dssp TTCCEEEEEEETTCCCCCBSCCGGGEE--ECTT-SSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEE----EEE-EEE
T ss_pred CCCeEEEEEECCCccccccCCCCceEE--EcCC-CCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCcc----eee-cCC
Confidence 999999998875310 0 00111111 0223 46778863 589999999999999888765431 111 123
Q ss_pred CCEEEEEEecCCceeEEEEEEcCC-Cceeeeeeeec-c--cCccCceEEE-cCcEEEEEECCCCeEEEEEeecce
Q 003800 188 SDQIYVVGYAGSSQFHAYQINAMN-GELLNHETAAF-S--GGFVGDVALV-SSDTLVTLDTTRSILVTVSFKNRK 257 (794)
Q Consensus 188 ~~~vyv~~~~g~~~~~v~ald~~t-G~~~w~~~v~~-~--~~~s~~~~~v-g~~~lv~~d~~~g~L~v~~l~sg~ 257 (794)
...++.++.+| ++..++..+ |++.-...... + ..+.....+. .++.+++.. +.|.++++|+.++.
T Consensus 189 ~~~~~~~~~DG----~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs-~~g~V~v~d~~~~~ 258 (386)
T 3sjl_D 189 PDTFFMHCRDG----SLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPT-YTGKIHQIDLSSGD 258 (386)
T ss_dssp TTEEEEEETTS----CEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEB-TTSEEEEEECTTSS
T ss_pred CceeEEECCCC----CEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEe-CCCEEEEEECCCCc
Confidence 45556666666 577777776 77642221000 0 1111112333 234444544 46899999997765
No 57
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=97.83 E-value=0.02 Score=63.21 Aligned_cols=185 Identities=12% Similarity=0.054 Sum_probs=115.7
Q ss_pred CCCEEEEEeCCCEEEEEECcCCccceEEEcCcc----------------------cceeeeeeeeCCEEEEEEccCCeEE
Q 003800 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVLGIN----------------------DVVDGIDIALGKYVITLSSDGSTLR 109 (794)
Q Consensus 52 ~~~~Vyv~t~~g~l~ALn~~tG~ivWR~~l~~~----------------------~~i~~l~~~~g~~~V~Vs~~g~~v~ 109 (794)
+.+.+++++.+|.|...|.++++.......... ..+..+ ...+..++.++.++.++
T Consensus 216 ~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~ 293 (464)
T 3v7d_B 216 NIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLI 293 (464)
T ss_dssp SCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEE
T ss_pred CCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEE
Confidence 346689999999999999999987765432211 111122 22334555566667999
Q ss_pred EEeCCCCcEeEEEeccCccccCCccccccccccccCCeEEEEE-CCEEEEEECCCCcEEEEEeccCcceeeeeEEEEecC
Q 003800 110 AWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSS-KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDES 188 (794)
Q Consensus 110 A~d~~tG~llWe~~l~~~~~s~~~~~~~~~~~~~~~~~V~V~~-~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~s~~~ 188 (794)
.||..+|+.+.+........ ..+.+. .+ +..++..+ +|.+...|..+|+.+.+........ ..+ ...+
T Consensus 294 vwd~~~~~~~~~~~~~~~~v-~~~~~~-----~~-~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v--~~~--~~~~ 362 (464)
T 3v7d_B 294 VWDVAQMKCLYILSGHTDRI-YSTIYD-----HE-RKRCISASMDTTIRIWDLENGELMYTLQGHTALV--GLL--RLSD 362 (464)
T ss_dssp EEETTTTEEEEEECCCSSCE-EEEEEE-----TT-TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCE--EEE--EECS
T ss_pred EEECCCCcEEEEecCCCCCE-EEEEEc-----CC-CCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcE--EEE--EEcC
Confidence 99999999998887554322 111111 11 34455554 8999999999999999886544332 222 2345
Q ss_pred CEEEEEEecCCceeEEEEEEcCCCceeeeeeeecccCccCceEEEcCcEEEEEECCCCeEEEEEeecce
Q 003800 189 DQIYVVGYAGSSQFHAYQINAMNGELLNHETAAFSGGFVGDVALVSSDTLVTLDTTRSILVTVSFKNRK 257 (794)
Q Consensus 189 ~~vyv~~~~g~~~~~v~ald~~tG~~~w~~~v~~~~~~s~~~~~vg~~~lv~~d~~~g~L~v~~l~sg~ 257 (794)
..++..+.+| .+..+|+.+++...... ........++...+.++++.. .|.+.+-|+.+|+
T Consensus 363 ~~l~s~s~dg----~v~vwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~--dg~i~iwd~~~g~ 423 (464)
T 3v7d_B 363 KFLVSAAADG----SIRGWDANDYSRKFSYH--HTNLSAITTFYVSDNILVSGS--ENQFNIYNLRSGK 423 (464)
T ss_dssp SEEEEEETTS----EEEEEETTTCCEEEEEE--CTTCCCEEEEEECSSEEEEEE--TTEEEEEETTTCC
T ss_pred CEEEEEeCCC----cEEEEECCCCceeeeec--CCCCccEEEEEeCCCEEEEec--CCeEEEEECCCCc
Confidence 6666655555 78899999998776653 111121122333556666665 5899999999987
No 58
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=97.82 E-value=0.0042 Score=64.66 Aligned_cols=182 Identities=12% Similarity=0.070 Sum_probs=107.9
Q ss_pred CCCEEEEEeCCCEEEEEECcCCccceEEEcCcccceeeeeeeeCCEEEEEEccCCeEEEEeCCCCcEeEEEeccCccccC
Q 003800 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSK 131 (794)
Q Consensus 52 ~~~~Vyv~t~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~l~~~~~s~ 131 (794)
+++.+++++.+|.|...|.++|+.+.+...... .+..+.....+..++.++.++.++.||..+|+.+.+........
T Consensus 152 ~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~v~-- 228 (337)
T 1gxr_A 152 DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTD-GASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIF-- 228 (337)
T ss_dssp TSSEEEEEETTSCEEEEETTTTEEEEEECCCSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEE--
T ss_pred CCCEEEEEeCCCcEEEEeCCCCceeeeeecccC-ceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecCCCceE--
Confidence 466799999999999999999988877643222 34443223344455556666799999999999999887654432
Q ss_pred CccccccccccccCCeEEEEE-CCEEEEEECCCCcEEEEEeccCcceeeeeEEEEecCCEEEEEEecCCceeEEEEEEcC
Q 003800 132 PLLLVPTNLKVDKDSLILVSS-KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAM 210 (794)
Q Consensus 132 ~~~~~~~~~~~~~~~~V~V~~-~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~s~~~~~vyv~~~~g~~~~~v~ald~~ 210 (794)
.+.+.+ + +..+++.+ ++.++.+|..+++.........+ ...+..+..+..++..+.+| .+..+|..
T Consensus 229 ~~~~s~-----~-~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~---v~~~~~~~~~~~l~~~~~dg----~i~~~~~~ 295 (337)
T 1gxr_A 229 SLGYCP-----T-GEWLAVGMESSNVEVLHVNKPDKYQLHLHESC---VLSLKFAYCGKWFVSTGKDN----LLNAWRTP 295 (337)
T ss_dssp EEEECT-----T-SSEEEEEETTSCEEEEETTSSCEEEECCCSSC---EEEEEECTTSSEEEEEETTS----EEEEEETT
T ss_pred EEEECC-----C-CCEEEEEcCCCcEEEEECCCCCeEEEcCCccc---eeEEEECCCCCEEEEecCCC----cEEEEECC
Confidence 111111 2 33444444 89999999999886533222221 22332222344444444344 78899999
Q ss_pred CCceeeeeeeecccCccCceEEE-cCcEEEEEECCCCeEEEEEe
Q 003800 211 NGELLNHETAAFSGGFVGDVALV-SSDTLVTLDTTRSILVTVSF 253 (794)
Q Consensus 211 tG~~~w~~~v~~~~~~s~~~~~v-g~~~lv~~d~~~g~L~v~~l 253 (794)
+|+.+.... ....+.. +.+. .++.+++.. .+|.+++-++
T Consensus 296 ~~~~~~~~~--~~~~v~~-~~~s~~~~~l~~~~-~dg~i~iw~~ 335 (337)
T 1gxr_A 296 YGASIFQSK--ESSSVLS-CDISVDDKYIVTGS-GDKKATVYEV 335 (337)
T ss_dssp TCCEEEEEE--CSSCEEE-EEECTTSCEEEEEE-TTSCEEEEEE
T ss_pred CCeEEEEec--CCCcEEE-EEECCCCCEEEEec-CCCeEEEEEE
Confidence 999885542 1222211 2221 334555555 3466666554
No 59
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.80 E-value=0.018 Score=68.46 Aligned_cols=192 Identities=10% Similarity=-0.009 Sum_probs=114.7
Q ss_pred CCCEEEEEeCCCEEEEEECcCCccceEEEcCcccceeeeeeeeCCEEEEEEccCCeEEEEeCCCCcEeEEEeccCccccC
Q 003800 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSK 131 (794)
Q Consensus 52 ~~~~Vyv~t~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~l~~~~~s~ 131 (794)
+++.+++++.+|.|.-.|..+|+.+.+...... .+..+.....+..+++++.++.++.||..+|+.+.+........ .
T Consensus 24 ~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v-~ 101 (814)
T 3mkq_A 24 TEPWVLTTLYSGRVEIWNYETQVEVRSIQVTET-PVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYI-R 101 (814)
T ss_dssp SSSEEEEEETTSEEEEEETTTTEEEEEEECCSS-CEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCE-E
T ss_pred CCCEEEEEeCCCEEEEEECCCCceEEEEecCCC-cEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCE-E
Confidence 467799999999999999999998887764332 34444323344455556667899999999999999887654432 1
Q ss_pred CccccccccccccCCeEEEEE-CCEEEEEECCCCc-EEEEEeccCcceeeeeEEEEecCCEEEEEEecCCceeEEEEEEc
Q 003800 132 PLLLVPTNLKVDKDSLILVSS-KGCLHAVSSIDGE-ILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINA 209 (794)
Q Consensus 132 ~~~~~~~~~~~~~~~~V~V~~-~g~l~ald~~tG~-~~W~~~~~~~~~~~~~~v~s~~~~~vyv~~~~g~~~~~v~ald~ 209 (794)
.+.+.+ + +..++..+ +|.+...|..+|. ..-........ ...+..+..++..++.+...+ .+..+|.
T Consensus 102 ~~~~s~-----~-~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~--v~~~~~~p~~~~~l~~~~~dg---~v~vwd~ 170 (814)
T 3mkq_A 102 SIAVHP-----T-KPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHF--VMCVAFNPKDPSTFASGCLDR---TVKVWSL 170 (814)
T ss_dssp EEEECS-----S-SSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSC--EEEEEEETTEEEEEEEEETTS---EEEEEET
T ss_pred EEEEeC-----C-CCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCc--EEEEEEEcCCCCEEEEEeCCC---eEEEEEC
Confidence 111211 1 23444444 8899999988773 33333222221 122221221344444443322 7888999
Q ss_pred CCCceeeeeeeecccCccCceEEE--cCcEEEEEECCCCeEEEEEeecce
Q 003800 210 MNGELLNHETAAFSGGFVGDVALV--SSDTLVTLDTTRSILVTVSFKNRK 257 (794)
Q Consensus 210 ~tG~~~w~~~v~~~~~~s~~~~~v--g~~~lv~~d~~~g~L~v~~l~sg~ 257 (794)
.+|+............+..-.... .++.+++.. ..|.+.+.++.+++
T Consensus 171 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~-~dg~i~~~d~~~~~ 219 (814)
T 3mkq_A 171 GQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITAS-DDLTIKIWDYQTKS 219 (814)
T ss_dssp TCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEEC-TTSEEEEEETTTTE
T ss_pred CCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEe-CCCEEEEEECCCCc
Confidence 998887766433223332211111 334555554 46889999988877
No 60
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=97.80 E-value=0.032 Score=62.31 Aligned_cols=192 Identities=13% Similarity=0.037 Sum_probs=116.7
Q ss_pred eccCCCEEEEEeCC-----CEEEEEECcCCccceEEEcCcccceeeeeeeeCCEEEEEEc----------cCCeEEEEeC
Q 003800 49 QKTGRKRVVVSTEE-----NVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSS----------DGSTLRAWNL 113 (794)
Q Consensus 49 ~~~~~~~Vyv~t~~-----g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~----------~g~~v~A~d~ 113 (794)
|..+.+++||++.. |.|..+|++|++++++...... . ++.+.-++..+||+. .++.|..+|+
T Consensus 80 p~~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~--P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~ 156 (426)
T 3c75_H 80 PAPDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFL--P-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDP 156 (426)
T ss_dssp CCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSS--C-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred CCCCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCC--C-ceEECCCCCEEEEEeccccccccCCCCCEEEEEEC
Confidence 34567889999974 6999999999999999988765 2 443344556677654 2458999999
Q ss_pred CCCcEeEEEeccCccc---cCCccccccccccccCCeEEEEE---CCEEEEEECCCCcEEEEEeccCcceeeeeEEEEec
Q 003800 114 PDGQMVWESFLRGSKH---SKPLLLVPTNLKVDKDSLILVSS---KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDE 187 (794)
Q Consensus 114 ~tG~llWe~~l~~~~~---s~~~~~~~~~~~~~~~~~V~V~~---~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~s~~ 187 (794)
.+++++-+..+.+..- ...+.-+. ...+ ++.+||.. ++.|..+|..+++++-+...+... .+. ..
T Consensus 157 ~t~~vv~~I~v~g~~r~~~g~~P~~~~--~spD-Gk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~----~~~--p~ 227 (426)
T 3c75_H 157 VTFLPIADIELPDAPRFLVGTYQWMNA--LTPD-NKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCY----HIF--PA 227 (426)
T ss_dssp TTCCEEEEEEETTCCCCCBSCCGGGSE--ECTT-SSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEE----EEE--EE
T ss_pred CCCcEEEEEECCCccccccCCCcceEE--EcCC-CCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCce----eec--cC
Confidence 9999999988751100 00111110 0223 46788863 579999999999999988765421 111 12
Q ss_pred CCEEEE-EEecCCceeEEEEEEcCCCceeeeee--eecc-cCccCceEEE-cCcEEEEEECCCCeEEEEEeecce
Q 003800 188 SDQIYV-VGYAGSSQFHAYQINAMNGELLNHET--AAFS-GGFVGDVALV-SSDTLVTLDTTRSILVTVSFKNRK 257 (794)
Q Consensus 188 ~~~vyv-~~~~g~~~~~v~ald~~tG~~~w~~~--v~~~-~~~s~~~~~v-g~~~lv~~d~~~g~L~v~~l~sg~ 257 (794)
+...|+ .+.+| ++..+|..+|+..+... +... ..+.....+. .+..++.. ...+.++++|+.++.
T Consensus 228 g~~~~v~~~~dG----~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~-s~~g~V~ViD~~~~~ 297 (426)
T 3c75_H 228 SPTVFYMNCRDG----SLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWP-TYTGKIFQADLTAEG 297 (426)
T ss_dssp ETTEEEEEETTS----SEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEE-BTTSEEEEEEECSSC
T ss_pred CCcEEEEEcCCC----CEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEE-eCCCcEEEEeccCCc
Confidence 233443 33334 56677778888876432 0000 0111111122 12233333 356889999997765
No 61
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=97.79 E-value=0.02 Score=59.80 Aligned_cols=191 Identities=10% Similarity=-0.041 Sum_probs=110.0
Q ss_pred CCCEEEEEeCCCEEEEEECcCCccceEEEcCcccceeeeeeeeCCEEEEEEccCCeEEEEeCCCCcEeEEEeccCccccC
Q 003800 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSK 131 (794)
Q Consensus 52 ~~~~Vyv~t~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~l~~~~~s~ 131 (794)
++..+++++.+|.|.-.|.++|+.+........ .+..+.....+..++.++.++.++.||..+|+.+.+........ .
T Consensus 24 ~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v-~ 101 (304)
T 2ynn_A 24 TEPWVLTTLYSGRVELWNYETQVEVRSIQVTET-PVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYI-R 101 (304)
T ss_dssp SSSEEEEEETTSEEEEEETTTTEEEEEEECCSS-CEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCE-E
T ss_pred CCCEEEEEcCCCcEEEEECCCCceeEEeeccCC-cEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcE-E
Confidence 466799999999999999999998876654333 23333223344455556667899999999999998887665433 1
Q ss_pred CccccccccccccCCeEEEEE-CCEEEEEECCCCcEEEE-EeccCcceeeeeEEEEecCCE-EEEEEecCCceeEEEEEE
Q 003800 132 PLLLVPTNLKVDKDSLILVSS-KGCLHAVSSIDGEILWT-RDFAAESVEVQQVIQLDESDQ-IYVVGYAGSSQFHAYQIN 208 (794)
Q Consensus 132 ~~~~~~~~~~~~~~~~V~V~~-~g~l~ald~~tG~~~W~-~~~~~~~~~~~~~v~s~~~~~-vyv~~~~g~~~~~v~ald 208 (794)
.+.+.+ + +..++..+ |+.+...|..+|...-. +...... ...+.....++. +...+.+| .+...|
T Consensus 102 ~~~~~~-----~-~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~--v~~v~~~p~~~~~l~sgs~D~----~v~iwd 169 (304)
T 2ynn_A 102 SIAVHP-----T-KPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHF--VMCVAFNPKDPSTFASGCLDR----TVKVWS 169 (304)
T ss_dssp EEEECS-----S-SSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSC--EEEEEECTTCTTEEEEEETTS----EEEEEE
T ss_pred EEEEcC-----C-CCEEEEECCCCeEEEEECCCCcchhhhhcccCCc--EEEEEECCCCCCEEEEEeCCC----eEEEEE
Confidence 121221 1 23333343 88898888888744322 2211111 112221122333 44444444 788889
Q ss_pred cCCCceeeeeeeecccCccCceEEE--cCcEEEEEECCCCeEEEEEeecce
Q 003800 209 AMNGELLNHETAAFSGGFVGDVALV--SSDTLVTLDTTRSILVTVSFKNRK 257 (794)
Q Consensus 209 ~~tG~~~w~~~v~~~~~~s~~~~~v--g~~~lv~~d~~~g~L~v~~l~sg~ 257 (794)
..++.............+..-.... .+.+++... ..+.+.+-|+.+++
T Consensus 170 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s-~D~~i~iWd~~~~~ 219 (304)
T 2ynn_A 170 LGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITAS-DDLTIKIWDYQTKS 219 (304)
T ss_dssp TTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEE-TTSEEEEEETTTTE
T ss_pred CCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEc-CCCeEEEEeCCCCc
Confidence 8888766544321111111101111 223555555 46889999998876
No 62
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=97.76 E-value=0.00082 Score=72.62 Aligned_cols=192 Identities=9% Similarity=0.106 Sum_probs=113.1
Q ss_pred CCEEEEEeCCCEEEEEECcCCccceEEEcC---cccceeeeeeeeCCEEEEEEccCCeEEEEeCCCCcEeEEEeccCccc
Q 003800 53 RKRVVVSTEENVIASLDLRHGEIFWRHVLG---INDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKH 129 (794)
Q Consensus 53 ~~~Vyv~t~~g~l~ALn~~tG~ivWR~~l~---~~~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~l~~~~~ 129 (794)
++++++++.+|.|.-.|.++|+........ ..+.+..+....++..++.++.++.|+.||..+|+.+-.........
T Consensus 93 d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V 172 (344)
T 4gqb_B 93 ERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQV 172 (344)
T ss_dssp TTEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCE
T ss_pred CCeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCce
Confidence 678999999999999999999988765542 22334444323344455545566799999999999998877554332
Q ss_pred cCCccccccccccccCCeEEEE-E-CCEEEEEECCCCcEEEEEeccCcceeeeeEEEEecCCEEEEEEecCCceeEEEEE
Q 003800 130 SKPLLLVPTNLKVDKDSLILVS-S-KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQI 207 (794)
Q Consensus 130 s~~~~~~~~~~~~~~~~~V~V~-~-~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~s~~~~~vyv~~~~g~~~~~v~al 207 (794)
....+. .+ +..+++. + |+.+...|..+|+..-+............+.....++.+++.+...+ .+..+
T Consensus 173 -~~~~~~-----~~-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg---~v~~w 242 (344)
T 4gqb_B 173 -TCVAAS-----PH-KDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENG---TVSLV 242 (344)
T ss_dssp -EEEEEC-----SS-CTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTS---EEEEE
T ss_pred -EEEEec-----CC-CCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCC---cEEEE
Confidence 111111 12 2335443 3 89999999999987766544332211222322223555665544332 78888
Q ss_pred EcCCCceeeeeeeecccCccCceEEE--cCcEEEEEECCCCeEEEEEeecce
Q 003800 208 NAMNGELLNHETAAFSGGFVGDVALV--SSDTLVTLDTTRSILVTVSFKNRK 257 (794)
Q Consensus 208 d~~tG~~~w~~~v~~~~~~s~~~~~v--g~~~lv~~d~~~g~L~v~~l~sg~ 257 (794)
|..+|+.+.+.... ...+. .+.+- +..+++... ..+.+++-|+.+++
T Consensus 243 d~~~~~~~~~~~~h-~~~v~-~v~fsp~g~~~lasgs-~D~~i~vwd~~~~~ 291 (344)
T 4gqb_B 243 DTKSTSCVLSSAVH-SQCVT-GLVFSPHSVPFLASLS-EDCSLAVLDSSLSE 291 (344)
T ss_dssp ESCC--CCEEEECC-SSCEE-EEEECSSSSCCEEEEE-TTSCEEEECTTCCE
T ss_pred ECCCCcEEEEEcCC-CCCEE-EEEEccCCCeEEEEEe-CCCeEEEEECCCCc
Confidence 99999988765321 11111 12221 234555554 35788888887776
No 63
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=97.76 E-value=0.018 Score=59.14 Aligned_cols=151 Identities=14% Similarity=0.145 Sum_probs=91.2
Q ss_pred CCEEEEEe-CCCEEEEEECcCCccceEEEcCcc-----cceeeeeeeeCCEEEEEEcc--CCeEEEEeCCCCcEeEEEec
Q 003800 53 RKRVVVST-EENVIASLDLRHGEIFWRHVLGIN-----DVVDGIDIALGKYVITLSSD--GSTLRAWNLPDGQMVWESFL 124 (794)
Q Consensus 53 ~~~Vyv~t-~~g~l~ALn~~tG~ivWR~~l~~~-----~~i~~l~~~~g~~~V~Vs~~--g~~v~A~d~~tG~llWe~~l 124 (794)
++.+|+++ .++.|..+|++ |+.+++...... ....++.....++.++++.. ++.|+.|| .+|+.++....
T Consensus 40 ~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~ 117 (286)
T 1q7f_A 40 QNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQFVRKFGA 117 (286)
T ss_dssp TCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TTSCEEEEECT
T ss_pred CCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCCcEEEEecC
Confidence 56788874 67899999986 888877643211 11223322123445555542 57899999 68999887654
Q ss_pred cCccccCCccccccccccccCCeEEEEE--CCEEEEEECCCCcEEEEEeccCcceeeeeEEEEecCCEEEEEEecCCcee
Q 003800 125 RGSKHSKPLLLVPTNLKVDKDSLILVSS--KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQF 202 (794)
Q Consensus 125 ~~~~~s~~~~~~~~~~~~~~~~~V~V~~--~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~s~~~~~vyv~~~~g~~~~ 202 (794)
.... .+.-+ ..+.++.+++.. ++.|+.+|. +|+..+.+........|..+. ...++.+|+.....+
T Consensus 118 ~~~~---~~~~i----~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~p~~i~-~~~~g~l~v~~~~~~--- 185 (286)
T 1q7f_A 118 TILQ---HPRGV----TVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVV-VNDKQEIFISDNRAH--- 185 (286)
T ss_dssp TTCS---CEEEE----EECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEE-ECSSSEEEEEEGGGT---
T ss_pred ccCC---CceEE----EEeCCCCEEEEECCCCEEEEEcC-CCCEEEEeCCCCccCCcEEEE-ECCCCCEEEEECCCC---
Confidence 3211 11111 233356677764 789999994 688888775432211244443 234678888654333
Q ss_pred EEEEEEcCCCceeeee
Q 003800 203 HAYQINAMNGELLNHE 218 (794)
Q Consensus 203 ~v~ald~~tG~~~w~~ 218 (794)
.+..+|+ +|+.+++.
T Consensus 186 ~i~~~~~-~g~~~~~~ 200 (286)
T 1q7f_A 186 CVKVFNY-EGQYLRQI 200 (286)
T ss_dssp EEEEEET-TCCEEEEE
T ss_pred EEEEEcC-CCCEEEEE
Confidence 7888897 67766554
No 64
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=97.73 E-value=0.0044 Score=67.42 Aligned_cols=196 Identities=11% Similarity=0.109 Sum_probs=115.3
Q ss_pred CCCEEEEEeCCCEEEEEECcCCcc-------ceEEEcCcccceeeeeee-eCCEEEEEEccCCeEEEEeCCCCcEeEEEe
Q 003800 52 GRKRVVVSTEENVIASLDLRHGEI-------FWRHVLGINDVVDGIDIA-LGKYVITLSSDGSTLRAWNLPDGQMVWESF 123 (794)
Q Consensus 52 ~~~~Vyv~t~~g~l~ALn~~tG~i-------vWR~~l~~~~~i~~l~~~-~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~ 123 (794)
++..+++++.+|.|.-.|..+|+. +....- ....+..+... .++..++.++.++.|+.||..+|+.+....
T Consensus 93 ~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 171 (402)
T 2aq5_A 93 NDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEG-HTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLG 171 (402)
T ss_dssp CTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEEC-CSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred CCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecC-CCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEe
Confidence 466799999999999999999943 333321 12233333222 233455556666799999999999988873
Q ss_pred --ccCccccCCccccccccccccCCeEEEEE-CCEEEEEECCCCcEEEEEeccCcceeeeeEEEEecCCEEEEEEecCCc
Q 003800 124 --LRGSKHSKPLLLVPTNLKVDKDSLILVSS-KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSS 200 (794)
Q Consensus 124 --l~~~~~s~~~~~~~~~~~~~~~~~V~V~~-~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~s~~~~~vyv~~~~g~~ 200 (794)
...... ..+.+. .+ +..++..+ +|.+...|..+|+...+.........+..+.. ..++.+++.++.++.
T Consensus 172 ~~~~~~~v-~~~~~~-----~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~g~~~~~ 243 (402)
T 2aq5_A 172 PDVHPDTI-YSVDWS-----RD-GALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVF-VSEGKILTTGFSRMS 243 (402)
T ss_dssp TTTCCSCE-EEEEEC-----TT-SSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEE-CSTTEEEEEEECTTC
T ss_pred cCCCCCce-EEEEEC-----CC-CCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEE-cCCCcEEEEeccCCC
Confidence 332221 111111 12 33444444 99999999999999988732221111223322 345666666643333
Q ss_pred eeEEEEEEcCCCce-eeeeeeecccCccCceEEE-cCcEEEEEECCCCeEEEEEeecce
Q 003800 201 QFHAYQINAMNGEL-LNHETAAFSGGFVGDVALV-SSDTLVTLDTTRSILVTVSFKNRK 257 (794)
Q Consensus 201 ~~~v~ald~~tG~~-~w~~~v~~~~~~s~~~~~v-g~~~lv~~d~~~g~L~v~~l~sg~ 257 (794)
...+..+|..+++. +....+.....+.. +.+- .+..+++.....+.+.+.++.+++
T Consensus 244 d~~i~iwd~~~~~~~~~~~~~~~~~~v~~-~~~s~~~~~l~~~g~~dg~i~i~d~~~~~ 301 (402)
T 2aq5_A 244 ERQVALWDTKHLEEPLSLQELDTSSGVLL-PFFDPDTNIVYLCGKGDSSIRYFEITSEA 301 (402)
T ss_dssp CEEEEEEETTBCSSCSEEEECCCCSSCEE-EEEETTTTEEEEEETTCSCEEEEEECSST
T ss_pred CceEEEEcCccccCCceEEeccCCCceeE-EEEcCCCCEEEEEEcCCCeEEEEEecCCC
Confidence 45889999998875 33332222222222 2222 345565554456889999998876
No 65
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=97.72 E-value=0.0078 Score=64.73 Aligned_cols=193 Identities=13% Similarity=0.083 Sum_probs=114.9
Q ss_pred CCCEEEEEeCCCEEEEEECcCCccceEEEcCcccceeeeeeeeCCEEEEEEccCCeEEEEeCCCCcEeEEEeccCccccC
Q 003800 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSK 131 (794)
Q Consensus 52 ~~~~Vyv~t~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~l~~~~~s~ 131 (794)
+++.+++++.+|.|...| .+|+.+.+..... ..+..+.....+..++.++.++.++.||..+|+.+............
T Consensus 119 ~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 196 (425)
T 1r5m_A 119 DGNSIVTGVENGELRLWN-KTGALLNVLNFHR-APIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSS 196 (425)
T ss_dssp TSSEEEEEETTSCEEEEE-TTSCEEEEECCCC-SCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC------
T ss_pred CCCEEEEEeCCCeEEEEe-CCCCeeeeccCCC-ccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccc
Confidence 466789999999999999 7888887765322 23444422233444554555679999999999999988765432000
Q ss_pred ---------CccccccccccccCCeEEEE-ECCEEEEEECCCCcEEEEEeccCcceeeeeEEEEecCCEEEEEEecCCce
Q 003800 132 ---------PLLLVPTNLKVDKDSLILVS-SKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQ 201 (794)
Q Consensus 132 ---------~~~~~~~~~~~~~~~~V~V~-~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~s~~~~~vyv~~~~g~~~ 201 (794)
...+.. .....++.+++. .+|.++.+|..+++............ ..+..+..+..++..+.+|
T Consensus 197 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i--~~~~~~~~~~~l~~~~~d~--- 269 (425)
T 1r5m_A 197 INAENHSGDGSLGVD--VEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPI--SVLEFNDTNKLLLSASDDG--- 269 (425)
T ss_dssp ---------CCCBSC--CEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCE--EEEEEETTTTEEEEEETTS---
T ss_pred eeeccccCCcceeeE--EEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCce--EEEEECCCCCEEEEEcCCC---
Confidence 000110 011224555555 48999999999998888776443322 2232223344455444444
Q ss_pred eEEEEEEcCCCceeeeeeeecccCccCceEEEcCcEEEEEECCCCeEEEEEeecce
Q 003800 202 FHAYQINAMNGELLNHETAAFSGGFVGDVALVSSDTLVTLDTTRSILVTVSFKNRK 257 (794)
Q Consensus 202 ~~v~ald~~tG~~~w~~~v~~~~~~s~~~~~vg~~~lv~~d~~~g~L~v~~l~sg~ 257 (794)
.+..+|..+|+.+..... ....+. .+.+..++.+++.. ..+.+.+.|+.+++
T Consensus 270 -~i~i~d~~~~~~~~~~~~-~~~~i~-~~~~~~~~~l~~~~-~d~~i~i~d~~~~~ 321 (425)
T 1r5m_A 270 -TLRIWHGGNGNSQNCFYG-HSQSIV-SASWVGDDKVISCS-MDGSVRLWSLKQNT 321 (425)
T ss_dssp -CEEEECSSSBSCSEEECC-CSSCEE-EEEEETTTEEEEEE-TTSEEEEEETTTTE
T ss_pred -EEEEEECCCCccceEecC-CCccEE-EEEECCCCEEEEEe-CCCcEEEEECCCCc
Confidence 688899999988766531 111121 12222333555554 46899999998877
No 66
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=97.72 E-value=0.07 Score=56.29 Aligned_cols=193 Identities=13% Similarity=0.221 Sum_probs=95.3
Q ss_pred EEEEEeCCC------EEEEEECcCCccceEEEcCcccceeeeeeeeCCEEEEEEcc--CCeEEEEeCCCCcEeEEEeccC
Q 003800 55 RVVVSTEEN------VIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSD--GSTLRAWNLPDGQMVWESFLRG 126 (794)
Q Consensus 55 ~Vyv~t~~g------~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~~--g~~v~A~d~~tG~llWe~~l~~ 126 (794)
++|+++..+ .++.+|+++|+...............+....++.+++++.. ++.|+.||..+|+..--..+..
T Consensus 4 ~~~vg~y~~~~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~ 83 (347)
T 3hfq_A 4 RILFGTYTKKTSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVA 83 (347)
T ss_dssp EEEEEECCSSSCCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEE
T ss_pred EEEEEeccCCCCCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeec
Confidence 477775321 48889999998766443332222223322234444333332 4689999998887533322111
Q ss_pred ccccCCccccccccccccC-CeEEEEE--CCEEEEEECC-CCcEEE--EEeccCcc-------eeeeeEEEEecCCEEEE
Q 003800 127 SKHSKPLLLVPTNLKVDKD-SLILVSS--KGCLHAVSSI-DGEILW--TRDFAAES-------VEVQQVIQLDESDQIYV 193 (794)
Q Consensus 127 ~~~s~~~~~~~~~~~~~~~-~~V~V~~--~g~l~ald~~-tG~~~W--~~~~~~~~-------~~~~~~v~s~~~~~vyv 193 (794)
... .+..+ ....+ +.+++.. ++.+..++.. +|.... ........ ..+..+.. ..++.+|+
T Consensus 84 ~~~--~p~~~----a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-spdg~l~v 156 (347)
T 3hfq_A 84 PGT--PPAYV----AVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDL-TPDNRLAV 156 (347)
T ss_dssp ESC--CCSEE----EEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEE-CTTSCEEE
T ss_pred CCC--CCEEE----EECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEE-CCCCcEEE
Confidence 110 11111 11223 4466654 6888888874 665443 32221110 01222322 33455776
Q ss_pred EEecCCceeEEEEEEcC-CCceeeeeeeecccCccC-ceEEE-cCcEEEEEECCCCeEEEEEeec--ce
Q 003800 194 VGYAGSSQFHAYQINAM-NGELLNHETAAFSGGFVG-DVALV-SSDTLVTLDTTRSILVTVSFKN--RK 257 (794)
Q Consensus 194 ~~~~g~~~~~v~ald~~-tG~~~w~~~v~~~~~~s~-~~~~v-g~~~lv~~d~~~g~L~v~~l~s--g~ 257 (794)
.+..++ .+..+|.. +|+......+..+.+... .+.+- .++.+++.+...+.+.+.++.. |+
T Consensus 157 ~~~~~~---~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~ 222 (347)
T 3hfq_A 157 IDLGSD---KVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGA 222 (347)
T ss_dssp EETTTT---EEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTE
T ss_pred EeCCCC---EEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCc
Confidence 554333 56666666 676554333322221111 12222 3345666666678888888874 55
No 67
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=97.72 E-value=0.008 Score=62.66 Aligned_cols=191 Identities=14% Similarity=0.125 Sum_probs=113.6
Q ss_pred CCCEEEEEeCCCEEEEEECcCCccceEEEcCcccceeeeeeeeCCEEEEEEccCCeEEEEeCCCCcEeEEEeccCccccC
Q 003800 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSK 131 (794)
Q Consensus 52 ~~~~Vyv~t~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~l~~~~~s~ 131 (794)
+++.+++++.+|.|.-.|.++|+.+-+..-... .+..+.....+..++.++.++.++.||..+|+.+.......... .
T Consensus 76 ~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v-~ 153 (312)
T 4ery_A 76 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSN-YVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV-S 153 (312)
T ss_dssp TSSEEEEEETTSEEEEEETTTCCEEEEEECCSS-CEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCE-E
T ss_pred CCCEEEEECCCCEEEEEECCCCcEEEEEcCCCC-CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcE-E
Confidence 467789999999999999999988766543222 23333222334455546666799999999999988776554322 1
Q ss_pred CccccccccccccCC-eEEEEE-CCEEEEEECCCCcEEEEEeccCcceeeeeEEEEecCCEEEEEEecCCceeEEEEEEc
Q 003800 132 PLLLVPTNLKVDKDS-LILVSS-KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINA 209 (794)
Q Consensus 132 ~~~~~~~~~~~~~~~-~V~V~~-~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~s~~~~~vyv~~~~g~~~~~v~ald~ 209 (794)
.+.+ ..++ .++..+ +|.+...|..+|+..-......... ...+..+..+..++..+.+| .+..+|.
T Consensus 154 ~~~~-------~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~d~----~i~iwd~ 221 (312)
T 4ery_A 154 AVHF-------NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP-VSFVKFSPNGKYILAATLDN----TLKLWDY 221 (312)
T ss_dssp EEEE-------CTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCC-EEEEEECTTSSEEEEEETTT----EEEEEET
T ss_pred EEEE-------cCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCc-eEEEEECCCCCEEEEEcCCC----eEEEEEC
Confidence 1111 1133 344443 8999999999998876654332211 11122122344445444444 7888999
Q ss_pred CCCceeeeeeeecccCccCceEE-E-cCcEEEEEECCCCeEEEEEeecce
Q 003800 210 MNGELLNHETAAFSGGFVGDVAL-V-SSDTLVTLDTTRSILVTVSFKNRK 257 (794)
Q Consensus 210 ~tG~~~w~~~v~~~~~~s~~~~~-v-g~~~lv~~d~~~g~L~v~~l~sg~ 257 (794)
.+|+.+............-...+ . ++..+++.. ..|.+.+-|+.+++
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~-~dg~i~vwd~~~~~ 270 (312)
T 4ery_A 222 SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS-EDNLVYIWNLQTKE 270 (312)
T ss_dssp TTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECC-TTSCEEEEETTTCC
T ss_pred CCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEEC-CCCEEEEEECCCch
Confidence 99988766532211111111111 1 334555554 46889999988876
No 68
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=97.70 E-value=0.0032 Score=67.67 Aligned_cols=154 Identities=12% Similarity=0.117 Sum_probs=96.4
Q ss_pred CCCE-EEEEeCCCEEEEEECcC------Cccce-----EEEc-----C-cccceeeeeeeeCCEEEEEEccCCeEEEEeC
Q 003800 52 GRKR-VVVSTEENVIASLDLRH------GEIFW-----RHVL-----G-INDVVDGIDIALGKYVITLSSDGSTLRAWNL 113 (794)
Q Consensus 52 ~~~~-Vyv~t~~g~l~ALn~~t------G~ivW-----R~~l-----~-~~~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~ 113 (794)
+++. +++++.+|.|...|.++ ++.+. +... . ....+..+.....+ .+++++.++.++.||.
T Consensus 136 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~ 214 (397)
T 1sq9_A 136 LLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISEL 214 (397)
T ss_dssp --CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEET
T ss_pred CCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEEC
Confidence 4667 88889999999999999 77765 4321 1 12223333222334 6665666789999999
Q ss_pred CCCcEeEEEec---c---CccccCCccccccccccccCCeEEEE-EC---CEEEEEECCCCcEEEEEec-----------
Q 003800 114 PDGQMVWESFL---R---GSKHSKPLLLVPTNLKVDKDSLILVS-SK---GCLHAVSSIDGEILWTRDF----------- 172 (794)
Q Consensus 114 ~tG~llWe~~l---~---~~~~s~~~~~~~~~~~~~~~~~V~V~-~~---g~l~ald~~tG~~~W~~~~----------- 172 (794)
.+|+.++.... . .... ..+.+.+ + +..+++. .+ |.+..+|..+|+...++..
T Consensus 215 ~~~~~~~~~~~~~~h~~~~~~i-~~i~~~~-----~-~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 287 (397)
T 1sq9_A 215 STLRPLYNFESQHSMINNSNSI-RSVKFSP-----Q-GSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGE 287 (397)
T ss_dssp TTTEEEEEEECCC---CCCCCE-EEEEECS-----S-TTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CC
T ss_pred CCCceeEEEeccccccccCCcc-ceEEECC-----C-CCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccc
Confidence 99999999886 3 2222 1111111 2 3444444 37 8999999999999988875
Q ss_pred --cCcceeeeeEEEEecCCEEEEEEecCCceeEEEEEEcCCCceeeeee
Q 003800 173 --AAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHET 219 (794)
Q Consensus 173 --~~~~~~~~~~v~s~~~~~vyv~~~~g~~~~~v~ald~~tG~~~w~~~ 219 (794)
.... ...+..+..+..++..+.+| .+..+|..+|+.+....
T Consensus 288 ~~~~~~--v~~~~~~~~~~~l~~~~~dg----~i~iwd~~~~~~~~~~~ 330 (397)
T 1sq9_A 288 FAHSSW--VMSLSFNDSGETLCSAGWDG----KLRFWDVKTKERITTLN 330 (397)
T ss_dssp BSBSSC--EEEEEECSSSSEEEEEETTS----EEEEEETTTTEEEEEEE
T ss_pred cccCCc--EEEEEECCCCCEEEEEeCCC----eEEEEEcCCCceeEEEe
Confidence 2221 22232222344444444344 78999999999887765
No 69
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=97.69 E-value=0.029 Score=58.84 Aligned_cols=157 Identities=9% Similarity=0.082 Sum_probs=96.2
Q ss_pred CCCEEEEEeCCCEEEEEECcCCccceEEEcCcccceeeeeeeeCCEEEEEEccC-----CeEEEEeCCCCcEeEEEeccC
Q 003800 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDG-----STLRAWNLPDGQMVWESFLRG 126 (794)
Q Consensus 52 ~~~~Vyv~t~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~~g-----~~v~A~d~~tG~llWe~~l~~ 126 (794)
+++.+++++.+|.|...|.++|+.+.+...... +..+.....+..+++++.+ +.++.||..++....+.....
T Consensus 85 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~ 162 (369)
T 3zwl_B 85 FTKYCVTGSADYSIKLWDVSNGQCVATWKSPVP--VKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVS 162 (369)
T ss_dssp TSSEEEEEETTTEEEEEETTTCCEEEEEECSSC--EEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEEC
T ss_pred CCCEEEEEeCCCeEEEEECCCCcEEEEeecCCC--eEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccc
Confidence 466799999999999999999999998875443 4444333344455555555 799999998886654443322
Q ss_pred ccccC---------CccccccccccccCCeEEEE-ECCEEEEEECCC-CcEEEEEeccCcceeeeeEEEEecCCEEEEEE
Q 003800 127 SKHSK---------PLLLVPTNLKVDKDSLILVS-SKGCLHAVSSID-GEILWTRDFAAESVEVQQVIQLDESDQIYVVG 195 (794)
Q Consensus 127 ~~~s~---------~~~~~~~~~~~~~~~~V~V~-~~g~l~ald~~t-G~~~W~~~~~~~~~~~~~~v~s~~~~~vyv~~ 195 (794)
..... ....+. ...+ +..+++. .+|.+..+|..+ ++............ ..+..+..+..++..+
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~--~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~~~~ 237 (369)
T 3zwl_B 163 EEPIHKIITHEGLDAATVAG--WSTK-GKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSI--SDMQFSPDLTYFITSS 237 (369)
T ss_dssp SSCSEEEECCTTCCCEEEEE--ECGG-GCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCE--EEEEECTTSSEEEEEE
T ss_pred cceeeeccCCcCccceeEEE--EcCC-CCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCce--eEEEECCCCCEEEEec
Confidence 11000 000110 0111 2344444 389999999998 77777776543332 2232222344454444
Q ss_pred ecCCceeEEEEEEcCCCceeeeee
Q 003800 196 YAGSSQFHAYQINAMNGELLNHET 219 (794)
Q Consensus 196 ~~g~~~~~v~ald~~tG~~~w~~~ 219 (794)
.+| .+..+|..+|+.+....
T Consensus 238 ~d~----~i~v~d~~~~~~~~~~~ 257 (369)
T 3zwl_B 238 RDT----NSFLVDVSTLQVLKKYE 257 (369)
T ss_dssp TTS----EEEEEETTTCCEEEEEE
T ss_pred CCc----eEEEEECCCCceeeeec
Confidence 444 78899999999887774
No 70
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=97.68 E-value=0.0058 Score=66.28 Aligned_cols=193 Identities=12% Similarity=0.112 Sum_probs=114.3
Q ss_pred CCCEEEEEeCCCEEEEEECcCCccceEEEcCcccceeeeeeeeCCEEEEEEccCCeEEEEeCCCCcEeEEEeccCccccC
Q 003800 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSK 131 (794)
Q Consensus 52 ~~~~Vyv~t~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~l~~~~~s~ 131 (794)
+++.+++++.+|.|...|.++|+...... .....+..+.....+..++.++.++.|+.||..+|+.+.......... .
T Consensus 108 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v-~ 185 (420)
T 3vl1_A 108 QMRRFILGTTEGDIKVLDSNFNLQREIDQ-AHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATV-T 185 (420)
T ss_dssp SSCEEEEEETTSCEEEECTTSCEEEEETT-SSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCE-E
T ss_pred CCCEEEEEECCCCEEEEeCCCcceeeecc-cccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcE-E
Confidence 46678899999999999999998754321 222334444323344455556666899999999999998877544332 1
Q ss_pred CccccccccccccCCeEEEEE-CCEEEEEECCCCcEEEEEeccCcce-eeeeEEEE--------------------ecCC
Q 003800 132 PLLLVPTNLKVDKDSLILVSS-KGCLHAVSSIDGEILWTRDFAAESV-EVQQVIQL--------------------DESD 189 (794)
Q Consensus 132 ~~~~~~~~~~~~~~~~V~V~~-~g~l~ald~~tG~~~W~~~~~~~~~-~~~~~v~s--------------------~~~~ 189 (794)
.+.+.+ + +..++..+ +|.+...|..+|+..+.+....... ....+... ..++
T Consensus 186 ~~~~~~-----~-~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 259 (420)
T 3vl1_A 186 DIAIID-----R-GRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYG 259 (420)
T ss_dssp EEEEET-----T-TTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTT
T ss_pred EEEEcC-----C-CCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCC
Confidence 111211 2 33444444 8999999999999999887532111 01111000 1234
Q ss_pred EEEEEEecCCceeEEEEEEcCCCceeeeeeeecccCccCceEEE-cCc-EEEEEECCCCeEEEEEeecce
Q 003800 190 QIYVVGYAGSSQFHAYQINAMNGELLNHETAAFSGGFVGDVALV-SSD-TLVTLDTTRSILVTVSFKNRK 257 (794)
Q Consensus 190 ~vyv~~~~g~~~~~v~ald~~tG~~~w~~~v~~~~~~s~~~~~v-g~~-~lv~~d~~~g~L~v~~l~sg~ 257 (794)
..++.+...+ .+..+|+.+|+...+........+.. +.+- .+. ++++.. ..|.+++-|+.+++
T Consensus 260 ~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~l~~g~-~dg~i~vwd~~~~~ 324 (420)
T 3vl1_A 260 KYVIAGHVSG---VITVHNVFSKEQTIQLPSKFTCSCNS-LTVDGNNANYIYAGY-ENGMLAQWDLRSPE 324 (420)
T ss_dssp EEEEEEETTS---CEEEEETTTCCEEEEECCTTSSCEEE-EEECSSCTTEEEEEE-TTSEEEEEETTCTT
T ss_pred CEEEEEcCCC---eEEEEECCCCceeEEcccccCCCcee-EEEeCCCCCEEEEEe-CCCeEEEEEcCCCc
Confidence 4444443322 68889999998876663211111211 1221 223 666665 45889999998865
No 71
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=97.65 E-value=0.061 Score=56.99 Aligned_cols=150 Identities=12% Similarity=0.077 Sum_probs=84.7
Q ss_pred EEEEEECcCCccceEEEcCcccceeeeeeeeCCEEEEEEc-cCCeEEEEeCCCCc--EeEEEeccCccccC-Cccccccc
Q 003800 64 VIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSS-DGSTLRAWNLPDGQ--MVWESFLRGSKHSK-PLLLVPTN 139 (794)
Q Consensus 64 ~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~-~g~~v~A~d~~tG~--llWe~~l~~~~~s~-~~~~~~~~ 139 (794)
.|..+|+++|+++.......-....++.+...+. ++++. ..+.|+.||+ +|+ .++........... .....|..
T Consensus 70 ~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~-l~v~d~~~~~v~~~~~-~g~~~~~~~~~~~~~~g~~~~~~~~P~~ 147 (329)
T 3fvz_A 70 TILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGN-YWVTDVALHQVFKLDP-HSKEGPLLILGRSMQPGSDQNHFCQPTD 147 (329)
T ss_dssp CEEEECTTTCCEEEEECTTTCSSEEEEEECTTSC-EEEEETTTTEEEEECT-TCSSCCSEEESBTTBCCCSTTCCSSEEE
T ss_pred cEEEEECCCCeEEeccCCCccCCceEEEECCCCC-EEEEECCCCEEEEEeC-CCCeEEEEEecccCCCCCCccccCCCcE
Confidence 6999999999986433211111222442222333 55544 4579999997 566 56555321110000 00001111
Q ss_pred ccccc-CCeEEEEE---CCEEEEEECCCCcEEEEEeccCc-------ce-eeeeEEEEecCCEEEEEEecCCceeEEEEE
Q 003800 140 LKVDK-DSLILVSS---KGCLHAVSSIDGEILWTRDFAAE-------SV-EVQQVIQLDESDQIYVVGYAGSSQFHAYQI 207 (794)
Q Consensus 140 ~~~~~-~~~V~V~~---~g~l~ald~~tG~~~W~~~~~~~-------~~-~~~~~v~s~~~~~vyv~~~~g~~~~~v~al 207 (794)
.+.+. ++.++|.. ++++..+| .+|+..+.+..... .+ .|..+......+.+|+.....+ ++..+
T Consensus 148 ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~---~I~~~ 223 (329)
T 3fvz_A 148 VAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENG---RIQCF 223 (329)
T ss_dssp EEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTT---EEEEE
T ss_pred EEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCC---EEEEE
Confidence 23443 56777763 67899999 78998888754321 11 1444432223489998765444 78999
Q ss_pred EcCCCceeeeee
Q 003800 208 NAMNGELLNHET 219 (794)
Q Consensus 208 d~~tG~~~w~~~ 219 (794)
|+.+|+.+....
T Consensus 224 ~~~~G~~~~~~~ 235 (329)
T 3fvz_A 224 KTDTKEFVREIK 235 (329)
T ss_dssp ETTTCCEEEEEC
T ss_pred ECCCCcEEEEEe
Confidence 999999887663
No 72
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=97.64 E-value=0.024 Score=61.58 Aligned_cols=191 Identities=14% Similarity=0.096 Sum_probs=112.5
Q ss_pred CCEEEEEeCCCEEEEEECcCCccceEEEcCcccceeeeeeeeCCEEEEEEccCCeEEEEeCCCCcEeEEEeccCccccCC
Q 003800 53 RKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKP 132 (794)
Q Consensus 53 ~~~Vyv~t~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~l~~~~~s~~ 132 (794)
++.+++++.+|.|...|.+++...-+........+..+.....+..++.++.++.|+.||..+|+.++......... ..
T Consensus 186 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v-~~ 264 (401)
T 4aez_A 186 RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAV-KA 264 (401)
T ss_dssp TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCC-CE
T ss_pred CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceE-EE
Confidence 66799999999999999995443323222223334444223344455556666799999999999999876554332 12
Q ss_pred ccccccccccccCCeEEEE-E---CCEEEEEECCCCcEEEEEeccCcceeeeeEEEEecCCEEEEEEecCCceeEEEEEE
Q 003800 133 LLLVPTNLKVDKDSLILVS-S---KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQIN 208 (794)
Q Consensus 133 ~~~~~~~~~~~~~~~V~V~-~---~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~s~~~~~vyv~~~~g~~~~~v~ald 208 (794)
+.+. .+ +..+++. + ++.+...|..+|+...+...... ...+..+..+..+++.+ |.....+..+|
T Consensus 265 ~~~~-----p~-~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~~---v~~~~~s~~~~~l~~~~--g~~dg~i~v~~ 333 (401)
T 4aez_A 265 VAWC-----PW-QSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQ---VTSLIWSPHSKEIMSTH--GFPDNNLSIWS 333 (401)
T ss_dssp EEEC-----TT-STTEEEEECCTTTCEEEEEETTTCCEEEEEECSSC---EEEEEECSSSSEEEEEE--CTTTCEEEEEE
T ss_pred EEEC-----CC-CCCEEEEecCCCCCEEEEEECCCCCEEEEEeCCCc---EEEEEECCCCCeEEEEe--ecCCCcEEEEe
Confidence 2222 22 2344443 3 89999999999999998875543 22232222334444332 11122778888
Q ss_pred cCCCceeeeeeeeccc-CccCceEEE-cCcEEEEEECCCCeEEEEEeecce
Q 003800 209 AMNGELLNHETAAFSG-GFVGDVALV-SSDTLVTLDTTRSILVTVSFKNRK 257 (794)
Q Consensus 209 ~~tG~~~w~~~v~~~~-~~s~~~~~v-g~~~lv~~d~~~g~L~v~~l~sg~ 257 (794)
..+|+......+.... .+. .+.+- .+..+++.. .+|.+.+-++.+++
T Consensus 334 ~~~~~~~~~~~~~~h~~~v~-~~~~s~dg~~l~s~~-~dg~i~iw~~~~~~ 382 (401)
T 4aez_A 334 YSSSGLTKQVDIPAHDTRVL-YSALSPDGRILSTAA-SDENLKFWRVYDGD 382 (401)
T ss_dssp EETTEEEEEEEEECCSSCCC-EEEECTTSSEEEEEC-TTSEEEEEECCC--
T ss_pred cCCccceeEEEecCCCCCEE-EEEECCCCCEEEEEe-CCCcEEEEECCCCc
Confidence 8888766555433221 221 12222 344565554 46889999998876
No 73
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=97.62 E-value=0.034 Score=57.04 Aligned_cols=154 Identities=12% Similarity=0.148 Sum_probs=93.5
Q ss_pred CCCEEEEEeC--CCEEEEEECcCCccceEEEcCcccceeeeeeeeCCEEEEEE-ccCCeEEEEeCCCCcEeEEEeccCcc
Q 003800 52 GRKRVVVSTE--ENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLS-SDGSTLRAWNLPDGQMVWESFLRGSK 128 (794)
Q Consensus 52 ~~~~Vyv~t~--~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs-~~g~~v~A~d~~tG~llWe~~l~~~~ 128 (794)
.++.+|+++. .+.|..+| .+|+.+++..........++.. ..++.++++ ..++.|+.||+ +|+.++.......
T Consensus 87 ~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~-~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~- 162 (286)
T 1q7f_A 87 NSGDIIVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTV-DNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKH- 162 (286)
T ss_dssp TTTEEEEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEE-CTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTT-
T ss_pred CCCeEEEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEE-eCCCCEEEEECCCCEEEEEcC-CCCEEEEeCCCCc-
Confidence 3778999985 78999999 6899887764432222333422 223335554 34578999995 6888887754321
Q ss_pred ccCCccccccccccccCCeEEEEE--CCEEEEEECCCCcEEEEEeccCcceeeeeEEEEecCCEEEEEEecCCceeEEEE
Q 003800 129 HSKPLLLVPTNLKVDKDSLILVSS--KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQ 206 (794)
Q Consensus 129 ~s~~~~~~~~~~~~~~~~~V~V~~--~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~s~~~~~vyv~~~~g~~~~~v~a 206 (794)
. ..+.- +..+.++.+++.. ++.|+.+|. +|+.++++........|..+. ...++.+|+....++ ..+..
T Consensus 163 ~-~~p~~----i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~-~d~~G~l~v~~~~~~--~~i~~ 233 (286)
T 1q7f_A 163 L-EFPNG----VVVNDKQEIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVG-INSNGEILIADNHNN--FNLTI 233 (286)
T ss_dssp C-SSEEE----EEECSSSEEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEE-ECTTCCEEEEECSSS--CEEEE
T ss_pred c-CCcEE----EEECCCCCEEEEECCCCEEEEEcC-CCCEEEEEccCCccCCCcEEE-ECCCCCEEEEeCCCC--EEEEE
Confidence 1 01111 1334457788864 789999996 677777775432111244443 234678887664321 15777
Q ss_pred EEcCCCceeeeee
Q 003800 207 INAMNGELLNHET 219 (794)
Q Consensus 207 ld~~tG~~~w~~~ 219 (794)
+|+ +|+.++...
T Consensus 234 ~~~-~g~~~~~~~ 245 (286)
T 1q7f_A 234 FTQ-DGQLISALE 245 (286)
T ss_dssp ECT-TSCEEEEEE
T ss_pred ECC-CCCEEEEEc
Confidence 885 688776664
No 74
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=97.60 E-value=0.059 Score=67.63 Aligned_cols=156 Identities=12% Similarity=0.066 Sum_probs=99.3
Q ss_pred cCCCEEEEEeCCCEEEEEECcCCccceEEEcCcccceeeeeeeeCCEEEEEEccCCeEEEEeCCCCcEeEEEeccCcccc
Q 003800 51 TGRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHS 130 (794)
Q Consensus 51 ~~~~~Vyv~t~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~l~~~~~s 130 (794)
.++..+++++.+|.|.-.|..+|+.+.+..-. ...+..+....++..++.++.++.|+.||..+|+.+..........
T Consensus 625 ~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h-~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v- 702 (1249)
T 3sfz_A 625 QDGQRIASCGADKTLQVFKAETGEKLLDIKAH-EDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQV- 702 (1249)
T ss_dssp TTSSEEEEEETTSCEEEEETTTCCEEEEECCC-SSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCE-
T ss_pred CCCCEEEEEeCCCeEEEEECCCCCEEEEeccC-CCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcE-
Confidence 34667888999999999999999987775422 2234444333344455555566799999999999999887655432
Q ss_pred CCccccccccccccCCeEEEE-E-CCEEEEEECCCCcEEEEEeccCcceeeeeEEEEecCCEEEEEEecCCceeEEEEEE
Q 003800 131 KPLLLVPTNLKVDKDSLILVS-S-KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQIN 208 (794)
Q Consensus 131 ~~~~~~~~~~~~~~~~~V~V~-~-~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~s~~~~~vyv~~~~g~~~~~v~ald 208 (794)
....+ ..+.++.+++. + +|.+...|..+|+...+........ ..+..+..+..++..+.+| .+..+|
T Consensus 703 ~~~~~-----~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v--~~~~~sp~~~~l~s~s~dg----~v~vwd 771 (1249)
T 3sfz_A 703 NCCHF-----TNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSV--NHCRFSPDDELLASCSADG----TLRLWD 771 (1249)
T ss_dssp EEEEE-----CSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCE--EEEEECSSTTEEEEEESSS----EEEEEE
T ss_pred EEEEE-----ecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCE--EEEEEecCCCEEEEEECCC----eEEEEe
Confidence 11111 12213334443 3 8999999999999888776443322 2222223344455444444 788889
Q ss_pred cCCCceeeeee
Q 003800 209 AMNGELLNHET 219 (794)
Q Consensus 209 ~~tG~~~w~~~ 219 (794)
..+|+......
T Consensus 772 ~~~~~~~~~~~ 782 (1249)
T 3sfz_A 772 VRSANERKSIN 782 (1249)
T ss_dssp GGGTEEEEEEE
T ss_pred CCCCcccceec
Confidence 88888766553
No 75
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=97.59 E-value=0.11 Score=59.01 Aligned_cols=115 Identities=15% Similarity=0.122 Sum_probs=76.1
Q ss_pred CCEEEEEeCCCEEEEEECcCCccceEEEc---CcccceeeeeeeeCCEEEEEEccCCeEEEEeCCCCcEeEEEeccCccc
Q 003800 53 RKRVVVSTEENVIASLDLRHGEIFWRHVL---GINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKH 129 (794)
Q Consensus 53 ~~~Vyv~t~~g~l~ALn~~tG~ivWR~~l---~~~~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~l~~~~~ 129 (794)
++.+++++.+|.|...|.++|+.+.+... .....+..+... .+..++.++.++.++.||..+|+.+..........
T Consensus 219 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~ 297 (615)
T 1pgu_A 219 GEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQL 297 (615)
T ss_dssp CCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCG
T ss_pred CCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcc
Confidence 55788899999999999999998877522 233335444334 45555556656799999999999999988763211
Q ss_pred cCCccccccccccccCCeEEEE-ECCEEEEEECCCCcEEEEEec
Q 003800 130 SKPLLLVPTNLKVDKDSLILVS-SKGCLHAVSSIDGEILWTRDF 172 (794)
Q Consensus 130 s~~~~~~~~~~~~~~~~~V~V~-~~g~l~ald~~tG~~~W~~~~ 172 (794)
......+ ....++.+++. .+|.+..+|..+|+.......
T Consensus 298 ~~~~~~~----~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~ 337 (615)
T 1pgu_A 298 GNQQVGV----VATGNGRIISLSLDGTLNFYELGHDEVLKTISG 337 (615)
T ss_dssp GGCEEEE----EEEETTEEEEEETTSCEEEEETTEEEEEEEECC
T ss_pred cCceeEE----EeCCCCeEEEEECCCCEEEEECCCCcEEEEEeC
Confidence 0111111 11124555555 388999999888887776643
No 76
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=97.58 E-value=0.0045 Score=64.74 Aligned_cols=154 Identities=10% Similarity=0.058 Sum_probs=103.2
Q ss_pred CCEEEEEEcc---CCeEEEEeCCCCcEeEEEeccCccccCCccccccccccccCCeEEEEE--CCEEEEEECCCCcEEEE
Q 003800 95 GKYVITLSSD---GSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSS--KGCLHAVSSIDGEILWT 169 (794)
Q Consensus 95 g~~~V~Vs~~---g~~v~A~d~~tG~llWe~~l~~~~~s~~~~~~~~~~~~~~~~~V~V~~--~g~l~ald~~tG~~~W~ 169 (794)
.++.+|+++. ++.|+.+|+++|+++-+..+..... +..+ +.+ ++.+|+.. ++.+..+|.++++++-+
T Consensus 30 ~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~f--geGi-----~~~-g~~lyv~t~~~~~v~viD~~t~~v~~~ 101 (266)
T 2iwa_A 30 ENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYF--GEGL-----TLL-NEKLYQVVWLKNIGFIYDRRTLSNIKN 101 (266)
T ss_dssp STTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCC--EEEE-----EEE-TTEEEEEETTCSEEEEEETTTTEEEEE
T ss_pred CCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcc--eEEE-----EEe-CCEEEEEEecCCEEEEEECCCCcEEEE
Confidence 3357888642 4799999999999999888754322 1111 233 56888885 89999999999999998
Q ss_pred EeccCcceeeeeEEEEecCCEEEEEEecCCceeEEEEEEcCCCceeeeeeeecc-cCcc--CceEEEcCcEEEEEECCCC
Q 003800 170 RDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAFS-GGFV--GDVALVSSDTLVTLDTTRS 246 (794)
Q Consensus 170 ~~~~~~~~~~~~~v~s~~~~~vyv~~~~g~~~~~v~ald~~tG~~~w~~~v~~~-~~~s--~~~~~vg~~~lv~~d~~~g 246 (794)
.+.+.+. ...+ +.+++.+|+.. |+ -++..+|++|.+.+....+... ..+. ....+++ +.+++....++
T Consensus 102 i~~g~~~--g~gl--t~Dg~~l~vs~--gs--~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~d-g~lyvn~~~~~ 172 (266)
T 2iwa_A 102 FTHQMKD--GWGL--ATDGKILYGSD--GT--SILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYIN-GEVWANIWQTD 172 (266)
T ss_dssp EECCSSS--CCEE--EECSSSEEEEC--SS--SEEEEECTTTCCEEEEEECEETTEECCCEEEEEEET-TEEEEEETTSS
T ss_pred EECCCCC--eEEE--EECCCEEEEEC--CC--CeEEEEECCCCcEEEEEEECCCCcccccceeEEEEC-CEEEEecCCCC
Confidence 8765111 1123 34677888643 32 2899999999999888776542 1111 1222333 44545555568
Q ss_pred eEEEEEeecceeeeEEEeec
Q 003800 247 ILVTVSFKNRKIAFQETHLS 266 (794)
Q Consensus 247 ~L~v~~l~sg~~~~~~~~l~ 266 (794)
.+.++|..+|++ ...+++.
T Consensus 173 ~V~vID~~tg~V-~~~I~~~ 191 (266)
T 2iwa_A 173 CIARISAKDGTL-LGWILLP 191 (266)
T ss_dssp EEEEEETTTCCE-EEEEECH
T ss_pred eEEEEECCCCcE-EEEEECC
Confidence 999999999984 5666664
No 77
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=97.55 E-value=0.0061 Score=63.96 Aligned_cols=151 Identities=11% Similarity=0.111 Sum_probs=91.9
Q ss_pred CCEEEE-EeCCCEEEEEECcCCccceEEEcCcccceeeeeeeeCCEEEEEE-ccCCeEEEEeCCCCcEeEEEeccCcc--
Q 003800 53 RKRVVV-STEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLS-SDGSTLRAWNLPDGQMVWESFLRGSK-- 128 (794)
Q Consensus 53 ~~~Vyv-~t~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs-~~g~~v~A~d~~tG~llWe~~l~~~~-- 128 (794)
++++|+ .+.++.|..+|+++|+++++..++.......+....++..++++ ..++.|+.||+.+|+.+++..+....
T Consensus 10 ~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~ 89 (349)
T 1jmx_B 10 GHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGE 89 (349)
T ss_dssp TCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTE
T ss_pred CCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEccccccc
Confidence 455554 56789999999999999999887652112233223334445544 45679999999999999998864320
Q ss_pred ---ccCCccccccccccccCCeEEEEE-------------CCEEEEEECCCCcE---EEEEeccCcceeeeeEEEEecCC
Q 003800 129 ---HSKPLLLVPTNLKVDKDSLILVSS-------------KGCLHAVSSIDGEI---LWTRDFAAESVEVQQVIQLDESD 189 (794)
Q Consensus 129 ---~s~~~~~~~~~~~~~~~~~V~V~~-------------~g~l~ald~~tG~~---~W~~~~~~~~~~~~~~v~s~~~~ 189 (794)
....+.+. .+ ++.+++.. ++.++.+|..+|+. ......+.. +..+.. ..++
T Consensus 90 ~~~~~~~~~~s-----pd-g~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~---~~~~~~-s~dg 159 (349)
T 1jmx_B 90 VGRSMYSFAIS-----PD-GKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQ---VYLMRA-ADDG 159 (349)
T ss_dssp EEECSSCEEEC-----TT-SSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSS---CCCEEE-CTTS
T ss_pred ccccccceEEC-----CC-CCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCc---ccceeE-CCCC
Confidence 00111111 12 34566654 38999999988653 334433321 112211 2345
Q ss_pred EEEEEEecCCceeEEEEEEcCCCceeeeee
Q 003800 190 QIYVVGYAGSSQFHAYQINAMNGELLNHET 219 (794)
Q Consensus 190 ~vyv~~~~g~~~~~v~ald~~tG~~~w~~~ 219 (794)
.+|+. .+ .+..+|+.+|+.++...
T Consensus 160 ~l~~~--~~----~i~~~d~~~~~~~~~~~ 183 (349)
T 1jmx_B 160 SLYVA--GP----DIYKMDVKTGKYTVALP 183 (349)
T ss_dssp CEEEE--SS----SEEEECTTTCCEEEEEC
T ss_pred cEEEc--cC----cEEEEeCCCCceecccc
Confidence 57763 22 38889999999887654
No 78
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=97.54 E-value=0.078 Score=57.84 Aligned_cols=148 Identities=11% Similarity=-0.031 Sum_probs=89.8
Q ss_pred ccCCCEEEEEe----------CCCEEEEEECcCCccceEEEcCc-c-----cceeeeeeeeCCEEEEEEc-c-CCeEEEE
Q 003800 50 KTGRKRVVVST----------EENVIASLDLRHGEIFWRHVLGI-N-----DVVDGIDIALGKYVITLSS-D-GSTLRAW 111 (794)
Q Consensus 50 ~~~~~~Vyv~t----------~~g~l~ALn~~tG~ivWR~~l~~-~-----~~i~~l~~~~g~~~V~Vs~-~-g~~v~A~ 111 (794)
+.+++.+|++. .++.|..+|++|++++-+..+.. . .....+...-++..++++. . .+.|..+
T Consensus 74 spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~vi 153 (373)
T 2mad_H 74 AHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLV 153 (373)
T ss_pred CCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEE
Confidence 34577899997 36789999999999988877751 1 0111232333555666654 2 4789999
Q ss_pred eCCCCcEeEE-EeccCccccCCccccccccccccCCeEEEE--ECCEEEEEECCCCcEEEEEec----cCcceeeeeEEE
Q 003800 112 NLPDGQMVWE-SFLRGSKHSKPLLLVPTNLKVDKDSLILVS--SKGCLHAVSSIDGEILWTRDF----AAESVEVQQVIQ 184 (794)
Q Consensus 112 d~~tG~llWe-~~l~~~~~s~~~~~~~~~~~~~~~~~V~V~--~~g~l~ald~~tG~~~W~~~~----~~~~~~~~~~v~ 184 (794)
| ++|+++-+ ..+.+.. .+.+ . ++..++. .+|++..+|. +|+..+.... ..+.-.......
T Consensus 154 D-~t~~~~~~~i~~~~~~-----~~~~-----~-~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~ 220 (373)
T 2mad_H 154 V-QGGSSDDQLLSSPTCY-----HIHP-----G-APSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQ 220 (373)
T ss_pred E-CCCCEEeEEcCCCceE-----EEEe-----C-CCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeeccee
Confidence 9 99999876 5543321 1111 2 2334443 4899999999 9998876432 111100001111
Q ss_pred EecCCEEEEEEecCCceeEEEEEEcCCCce
Q 003800 185 LDESDQIYVVGYAGSSQFHAYQINAMNGEL 214 (794)
Q Consensus 185 s~~~~~vyv~~~~g~~~~~v~ald~~tG~~ 214 (794)
...++.+|+++..| .++.+|..++..
T Consensus 221 ~~~~~~~~~~~~~~----~v~vid~~~~~~ 246 (373)
T 2mad_H 221 ANKSGRIVWPVYSG----KILQADISAAGA 246 (373)
T ss_pred EecCCEEEEEcCCc----eEEEEeccCCcc
Confidence 23456666666544 788999887643
No 79
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=97.54 E-value=0.1 Score=57.13 Aligned_cols=151 Identities=13% Similarity=0.098 Sum_probs=91.9
Q ss_pred CCCEEEEEeCCCEEEEEECcCCccceEEEcCcccceeeeeeeeCCEEEEEEccCCeEEEEeCCCCcEeEEEeccCccccC
Q 003800 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSK 131 (794)
Q Consensus 52 ~~~~Vyv~t~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~l~~~~~s~ 131 (794)
+...+++++.+|.|...|..+|+..-..... .+.+..+....++..++.++.++.++.||..+++.+-......... .
T Consensus 119 ~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h-~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V-~ 196 (410)
T 1vyh_C 119 VFSVMVSASEDATIKVWDYETGDFERTLKGH-TDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNV-S 196 (410)
T ss_dssp SSSEEEEEESSSCEEEEETTTCCCCEEECCC-SSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCE-E
T ss_pred CCCEEEEEeCCCeEEEEECCCCcEEEEEecc-CCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCE-E
Confidence 3567888999999999999999887544322 2234444223344455556667899999999998876655433222 1
Q ss_pred CccccccccccccCCeEEEEE-CCEEEEEECCCCcEEEEEeccCcceeeeeEEEEecCCEEEEEE-ecCCceeEEEEEEc
Q 003800 132 PLLLVPTNLKVDKDSLILVSS-KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVG-YAGSSQFHAYQINA 209 (794)
Q Consensus 132 ~~~~~~~~~~~~~~~~V~V~~-~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~s~~~~~vyv~~-~~g~~~~~v~ald~ 209 (794)
.+.+.+ + ++.++..+ ++.+...|..+|...-++....... ..+.. ..++.+++.+ .+| .+..+|.
T Consensus 197 ~v~~~p-----~-~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v--~~~~~-~~~g~~l~s~s~D~----~v~vwd~ 263 (410)
T 1vyh_C 197 SVSIMP-----N-GDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWV--RMVRP-NQDGTLIASCSNDQ----TVRVWVV 263 (410)
T ss_dssp EEEECS-----S-SSEEEEEETTSEEEEEETTTCCEEEEEECCSSCE--EEEEE-CTTSSEEEEEETTS----CEEEEET
T ss_pred EEEEeC-----C-CCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccE--EEEEE-CCCCCEEEEEcCCC----eEEEEEC
Confidence 111111 1 23344444 9999999999998877765443322 12221 2344444433 344 6777888
Q ss_pred CCCceeee
Q 003800 210 MNGELLNH 217 (794)
Q Consensus 210 ~tG~~~w~ 217 (794)
.+|+..-+
T Consensus 264 ~~~~~~~~ 271 (410)
T 1vyh_C 264 ATKECKAE 271 (410)
T ss_dssp TTCCEEEE
T ss_pred CCCceeeE
Confidence 88876543
No 80
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=97.52 E-value=0.033 Score=59.44 Aligned_cols=194 Identities=14% Similarity=0.043 Sum_probs=113.0
Q ss_pred CCCEEEEEeCCCEEEEEECcCCccceEEEcC------------cccceeeeeeee-CCEEEEEEccCCeEEEEeCCCCcE
Q 003800 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVLG------------INDVVDGIDIAL-GKYVITLSSDGSTLRAWNLPDGQM 118 (794)
Q Consensus 52 ~~~~Vyv~t~~g~l~ALn~~tG~ivWR~~l~------------~~~~i~~l~~~~-g~~~V~Vs~~g~~v~A~d~~tG~l 118 (794)
+++.+++++.+|.|...|..+|+........ ....+..+.... ++..++.++.++.++.||..+|+.
T Consensus 55 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~ 134 (408)
T 4a11_B 55 EGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQT 134 (408)
T ss_dssp TCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEE
T ss_pred CCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCcc
Confidence 4677999999999999999999988876532 112233332222 334555455567999999999999
Q ss_pred eEEEeccCccccCCccccccccccccCC-eEEEE-ECCEEEEEECCCCcEEEEEeccCcceeeeeEEEEecCCEEEEEEe
Q 003800 119 VWESFLRGSKHSKPLLLVPTNLKVDKDS-LILVS-SKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGY 196 (794)
Q Consensus 119 lWe~~l~~~~~s~~~~~~~~~~~~~~~~-~V~V~-~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~s~~~~~vyv~~~ 196 (794)
........... .....+ ...++ .+++. .+|.+..+|..+|+............ ..+.....+..+++.+.
T Consensus 135 ~~~~~~~~~~~--~~~~~~----~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v--~~~~~~~~~~~ll~~~~ 206 (408)
T 4a11_B 135 ADVFNFEETVY--SHHMSP----VSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEI--LAVSWSPRYDYILATAS 206 (408)
T ss_dssp EEEEECSSCEE--EEEECS----SCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCE--EEEEECSSCTTEEEEEE
T ss_pred ceeccCCCcee--eeEeec----CCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcE--EEEEECCCCCcEEEEEc
Confidence 99988655432 111221 11122 34444 48999999999999888776443322 22221223333444443
Q ss_pred cCCceeEEEEEEcCCCceeeeee-ee-------cc---cCccCc---eEEE-cCcEEEEEECCCCeEEEEEeecce
Q 003800 197 AGSSQFHAYQINAMNGELLNHET-AA-------FS---GGFVGD---VALV-SSDTLVTLDTTRSILVTVSFKNRK 257 (794)
Q Consensus 197 ~g~~~~~v~ald~~tG~~~w~~~-v~-------~~---~~~s~~---~~~v-g~~~lv~~d~~~g~L~v~~l~sg~ 257 (794)
..+ .+..+|..+++.....- .. .. ....+. +.+- .+..+++.. .+|.+++.++.+++
T Consensus 207 ~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~~ 278 (408)
T 4a11_B 207 ADS---RVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVG-TDNRMRLWNSSNGE 278 (408)
T ss_dssp TTS---CEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTTCC
T ss_pred CCC---cEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEec-CCCeEEEEECCCCc
Confidence 322 68888988876322110 00 00 011111 1111 334566665 46889999998876
No 81
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=97.50 E-value=0.13 Score=55.65 Aligned_cols=190 Identities=9% Similarity=0.101 Sum_probs=102.7
Q ss_pred CCEEEEEeCCCEEEEEECcCCccceEEEcCccc-----------------ceeeeeeeeCCEEEEEEccCCeEEEEeCCC
Q 003800 53 RKRVVVSTEENVIASLDLRHGEIFWRHVLGIND-----------------VVDGIDIALGKYVITLSSDGSTLRAWNLPD 115 (794)
Q Consensus 53 ~~~Vyv~t~~g~l~ALn~~tG~ivWR~~l~~~~-----------------~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~t 115 (794)
+..+.+++ ++.+.-.|..+|+.+.+....... .+..+....++..++.++.++.|+.||..+
T Consensus 76 g~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~ 154 (393)
T 1erj_A 76 GEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIEN 154 (393)
T ss_dssp SSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred CCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEEcCCCeEEEEECCC
Confidence 44454444 567888899999988775432110 122232222344555466668999999999
Q ss_pred CcEeEEEeccCccccCCccccccccccccCCeEEEEE-CCEEEEEECCCCcEEEEEeccCcceeeeeEEEEecCCEEEEE
Q 003800 116 GQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSS-KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVV 194 (794)
Q Consensus 116 G~llWe~~l~~~~~s~~~~~~~~~~~~~~~~~V~V~~-~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~s~~~~~vyv~ 194 (794)
|+.+-......... ..+.+.+ + +..++..+ ++.+...|..+|+........... ..+..+..++..++.
T Consensus 155 ~~~~~~~~~h~~~v-~~~~~~p-----~-~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v---~~~~~~~~~~~~l~~ 224 (393)
T 1erj_A 155 RKIVMILQGHEQDI-YSLDYFP-----S-GDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGV---TTVAVSPGDGKYIAA 224 (393)
T ss_dssp TEEEEEECCCSSCE-EEEEECT-----T-SSEEEEEETTSEEEEEETTTTEEEEEEECSSCE---EEEEECSTTCCEEEE
T ss_pred CcEEEEEccCCCCE-EEEEEcC-----C-CCEEEEecCCCcEEEEECCCCeeEEEEEcCCCc---EEEEEECCCCCEEEE
Confidence 99887766544322 1111211 2 23444443 899999999999988877654332 122212224444444
Q ss_pred EecCCceeEEEEEEcCCCceeeeeeeecc--cCccC---ceEEE-cCcEEEEEECCCCeEEEEEeecce
Q 003800 195 GYAGSSQFHAYQINAMNGELLNHETAAFS--GGFVG---DVALV-SSDTLVTLDTTRSILVTVSFKNRK 257 (794)
Q Consensus 195 ~~~g~~~~~v~ald~~tG~~~w~~~v~~~--~~~s~---~~~~v-g~~~lv~~d~~~g~L~v~~l~sg~ 257 (794)
+...+ .+..+|..+|+.+........ .+-.+ .+.+- .+..+++.. ..+.+.+-|+.++.
T Consensus 225 ~s~d~---~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s-~d~~v~~wd~~~~~ 289 (393)
T 1erj_A 225 GSLDR---AVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGS-LDRSVKLWNLQNAN 289 (393)
T ss_dssp EETTS---CEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEE-TTSEEEEEEC----
T ss_pred EcCCC---cEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEe-CCCEEEEEECCCCC
Confidence 43322 688889999987765422111 11111 12221 334565555 35778888877654
No 82
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=97.47 E-value=0.022 Score=62.73 Aligned_cols=200 Identities=12% Similarity=0.043 Sum_probs=113.4
Q ss_pred ccCCCEEEEEe----------CCCEEEEEECcCCccceEEEcCccc------ceeeeeeeeCCEEEEEEcc--CCeEEEE
Q 003800 50 KTGRKRVVVST----------EENVIASLDLRHGEIFWRHVLGIND------VVDGIDIALGKYVITLSSD--GSTLRAW 111 (794)
Q Consensus 50 ~~~~~~Vyv~t----------~~g~l~ALn~~tG~ivWR~~l~~~~------~i~~l~~~~g~~~V~Vs~~--g~~v~A~ 111 (794)
+.+++.+|+++ ..+.|..+|++|++++-+..++.+. ...++.+..++..++|+.. ++.|..+
T Consensus 86 spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVI 165 (386)
T 3sjl_D 86 ADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVV 165 (386)
T ss_dssp CTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEE
T ss_pred CCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEE
Confidence 34577799987 3678999999999999988775410 1113323445566777642 5789999
Q ss_pred eCCCCcEeEEEeccCccccCCccccccccccccCCeEEEEE-CCEEEEEECCC-CcEEEEEecc-Ccceeeee--EEEEe
Q 003800 112 NLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSS-KGCLHAVSSID-GEILWTRDFA-AESVEVQQ--VIQLD 186 (794)
Q Consensus 112 d~~tG~llWe~~l~~~~~s~~~~~~~~~~~~~~~~~V~V~~-~g~l~ald~~t-G~~~W~~~~~-~~~~~~~~--~v~s~ 186 (794)
|..+++++-+..+.+.. .+.+ .+.+..+..+ ||++..++..+ |++.=+.... .+...+.. .....
T Consensus 166 D~~t~~vv~tI~v~g~~-----~~~P-----~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~ 235 (386)
T 3sjl_D 166 DLEGKAFKRMLDVPDCY-----HIFP-----TAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQ 235 (386)
T ss_dssp ETTTTEEEEEEECCSEE-----EEEE-----EETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEET
T ss_pred ECCCCcEEEEEECCCcc-----eeec-----CCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEc
Confidence 99999999888775421 1222 1123333443 88888888876 7763111100 01000110 11112
Q ss_pred cCCEEEEEEecCCceeEEEEEEcCCCceeeeeeee---c--------ccCccCceEEE-cCc-EEEEEEC--------CC
Q 003800 187 ESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAA---F--------SGGFVGDVALV-SSD-TLVTLDT--------TR 245 (794)
Q Consensus 187 ~~~~vyv~~~~g~~~~~v~ald~~tG~~~w~~~v~---~--------~~~~s~~~~~v-g~~-~lv~~d~--------~~ 245 (794)
.++++++++..| +++.+|..++.+.-..++. . |.+... +.+- .++ +|++... ..
T Consensus 236 ~dG~~~~vs~~g----~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~-~a~~~~~~~lyV~~~~~~~~~hk~~~ 310 (386)
T 3sjl_D 236 KAGRLVWPTYTG----KIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQ-VAYHRALDRIYLLVDQRDEWRHKTAS 310 (386)
T ss_dssp TTTEEEEEBTTS----EEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSC-EEEETTTTEEEEEEEECCTTCTTSCE
T ss_pred CCCcEEEEeCCC----EEEEEECCCCcceeecceeccccccccccccCCCcce-eeECCCCCeEEEEeccccccccCCCC
Confidence 466666567655 8999999877643222221 0 111111 1111 223 4444421 12
Q ss_pred CeEEEEEeecceeeeEEEee
Q 003800 246 SILVTVSFKNRKIAFQETHL 265 (794)
Q Consensus 246 g~L~v~~l~sg~~~~~~~~l 265 (794)
+.+.++|++++++ ++.+++
T Consensus 311 ~~V~viD~~t~kv-~~~i~v 329 (386)
T 3sjl_D 311 RFVVVLDAKTGER-LAKFEM 329 (386)
T ss_dssp EEEEEEETTTCCE-EEEEEE
T ss_pred CEEEEEECCCCeE-EEEEEC
Confidence 4688999998884 566665
No 83
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=97.46 E-value=0.03 Score=62.52 Aligned_cols=231 Identities=11% Similarity=-0.011 Sum_probs=130.3
Q ss_pred eeecccccEeeEEeccCceeeeeeeeeccCCCEEEEEe----------CCCEEEEEECcCCccceEEEcCcc------cc
Q 003800 23 LYEDQVGLMDWHQQYIGKVKHAVFHTQKTGRKRVVVST----------EENVIASLDLRHGEIFWRHVLGIN------DV 86 (794)
Q Consensus 23 l~edqvG~~dW~~~~vG~~~~~~f~~~~~~~~~Vyv~t----------~~g~l~ALn~~tG~ivWR~~l~~~------~~ 86 (794)
++.-..+++.++.+.-..| ... .+.+++++||++ ..+.|..+|++|++++-+..++.. ..
T Consensus 103 VID~~t~~vv~~I~vG~~P-gia---~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~ 178 (426)
T 3c75_H 103 VIDGSTGRILGMTDGGFLP-HPV---AAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTY 178 (426)
T ss_dssp EEETTTTEEEEEEEECSSC-EEE---ECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCC
T ss_pred EEECCCCEEEEEEECCCCC-ceE---ECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCC
Confidence 4455566666776653333 222 234577899997 468899999999999998887511 01
Q ss_pred eeeeeeeeCCEEEEEEcc--CCeEEEEeCCCCcEeEEEeccCccc------------c--CCccccc-------------
Q 003800 87 VDGIDIALGKYVITLSSD--GSTLRAWNLPDGQMVWESFLRGSKH------------S--KPLLLVP------------- 137 (794)
Q Consensus 87 i~~l~~~~g~~~V~Vs~~--g~~v~A~d~~tG~llWe~~l~~~~~------------s--~~~~~~~------------- 137 (794)
..++.+..++..+||+.. ++.|..+|..+++++-+..+.+... + ....++.
T Consensus 179 P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~ 258 (426)
T 3c75_H 179 QWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEV 258 (426)
T ss_dssp GGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCC
T ss_pred cceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeee
Confidence 123333445667777652 5789999999999999888743100 0 0000000
Q ss_pred --c-------cc--ccccCCeEEEE-ECCEEEEEECCCCcE----EEEEeccCc---ceeeee---EEEEecCCEEEEEE
Q 003800 138 --T-------NL--KVDKDSLILVS-SKGCLHAVSSIDGEI----LWTRDFAAE---SVEVQQ---VIQLDESDQIYVVG 195 (794)
Q Consensus 138 --~-------~~--~~~~~~~V~V~-~~g~l~ald~~tG~~----~W~~~~~~~---~~~~~~---~v~s~~~~~vyv~~ 195 (794)
. .. ..+ ++.+++. ..+.|+.+|..++.+ .|+...... ...+.. +....+++.+|+..
T Consensus 259 ~~v~~~p~~~~~~~~~d-g~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~ 337 (426)
T 3c75_H 259 FHTEDELLINHPAFSLR-SGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLV 337 (426)
T ss_dssp CSCTTSCBCSCCEECTT-TCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEE
T ss_pred eccCCCceeeEeeecCC-CCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEe
Confidence 0 00 000 1222222 245566666554432 133210000 001111 22234567889865
Q ss_pred ecCC------ceeEEEEEEcCCCceeeeeeeec-ccCccCceEEE-cCc-EEEEEECCCCeEEEEEeecceeeeEEE
Q 003800 196 YAGS------SQFHAYQINAMNGELLNHETAAF-SGGFVGDVALV-SSD-TLVTLDTTRSILVTVSFKNRKIAFQET 263 (794)
Q Consensus 196 ~~g~------~~~~v~ald~~tG~~~w~~~v~~-~~~~s~~~~~v-g~~-~lv~~d~~~g~L~v~~l~sg~~~~~~~ 263 (794)
..++ ..-.|..+|++|++.+....+.. |.++ .+- .++ .++......+.+.++|+.++++ ++.+
T Consensus 338 ~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~~P~gi----a~spDg~~~lyv~n~~s~~VsVID~~t~kv-v~tI 409 (426)
T 3c75_H 338 DQRDEWKHKAASRFVVVLNAETGERINKIELGHEIDSI----NVSQDAEPLLYALSAGTQTLHIYDAATGEE-LRSV 409 (426)
T ss_dssp EECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEE----EECCSSSCEEEEEETTTTEEEEEETTTCCE-EEEE
T ss_pred cccccccccCCCCEEEEEECCCCeEEEEEECCCCcCeE----EEccCCCEEEEEEcCCCCeEEEEECCCCCE-EEEe
Confidence 4221 12379999999999998876654 3322 222 334 6777776678999999999883 4443
No 84
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=97.45 E-value=0.06 Score=56.32 Aligned_cols=196 Identities=12% Similarity=0.167 Sum_probs=109.2
Q ss_pred CCEEEE-EeC---CCEEEEEECcCCccceEEEcCcccceeeeeeeeC---CEEEEEEccCCeEEEEeCCCCc-EeEEEec
Q 003800 53 RKRVVV-STE---ENVIASLDLRHGEIFWRHVLGINDVVDGIDIALG---KYVITLSSDGSTLRAWNLPDGQ-MVWESFL 124 (794)
Q Consensus 53 ~~~Vyv-~t~---~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g---~~~V~Vs~~g~~v~A~d~~tG~-llWe~~l 124 (794)
++.+++ ++. +|.|.-.|.++|+.......+....+..+..... +..++.++.++.++.||..+|+ .+.....
T Consensus 30 ~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 109 (357)
T 3i2n_A 30 SAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKG 109 (357)
T ss_dssp SSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECC
T ss_pred CceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEe
Confidence 445544 443 8999999999999876666554444544422222 3555556666799999999998 7777765
Q ss_pred cCccccCCccccccccccccCC-eEEEEE-CCEEEEEECCCCc-EEEEEeccCcc--eeeeeEEE---EecCCEEEEEEe
Q 003800 125 RGSKHSKPLLLVPTNLKVDKDS-LILVSS-KGCLHAVSSIDGE-ILWTRDFAAES--VEVQQVIQ---LDESDQIYVVGY 196 (794)
Q Consensus 125 ~~~~~s~~~~~~~~~~~~~~~~-~V~V~~-~g~l~ald~~tG~-~~W~~~~~~~~--~~~~~~v~---s~~~~~vyv~~~ 196 (794)
..... ..+...+ ......++ .++..+ +|.+...|..+++ +...+...... .....+.. -..++..++.+.
T Consensus 110 ~~~~v-~~~~~~~-~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~ 187 (357)
T 3i2n_A 110 HKEII-NAIDGIG-GLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGY 187 (357)
T ss_dssp CSSCE-EEEEEES-GGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEE
T ss_pred cccce-EEEeecc-ccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEc
Confidence 44332 1111110 00011133 444443 8999999999887 66666443221 11111210 012344444443
Q ss_pred cCCceeEEEEEEcCCCceeeeeeeecccCccCceEEE----cCcEEEEEECCCCeEEEEEeecce
Q 003800 197 AGSSQFHAYQINAMNGELLNHETAAFSGGFVGDVALV----SSDTLVTLDTTRSILVTVSFKNRK 257 (794)
Q Consensus 197 ~g~~~~~v~ald~~tG~~~w~~~v~~~~~~s~~~~~v----g~~~lv~~d~~~g~L~v~~l~sg~ 257 (794)
..+ .+..+|..+++..+... ....+.. +.+. .++.+++.. ..|.+.+.|+.+++
T Consensus 188 ~d~---~i~i~d~~~~~~~~~~~--~~~~v~~-~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~ 245 (357)
T 3i2n_A 188 DNG---DIKLFDLRNMALRWETN--IKNGVCS-LEFDRKDISMNKLVATS-LEGKFHVFDMRTQH 245 (357)
T ss_dssp TTS---EEEEEETTTTEEEEEEE--CSSCEEE-EEESCSSSSCCEEEEEE-STTEEEEEEEEEEE
T ss_pred cCC---eEEEEECccCceeeecC--CCCceEE-EEcCCCCCCCCEEEEEC-CCCeEEEEeCcCCC
Confidence 322 78999999999866542 2222221 1221 234555555 46899999998866
No 85
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=97.44 E-value=0.17 Score=53.52 Aligned_cols=188 Identities=10% Similarity=-0.006 Sum_probs=110.1
Q ss_pred CCCEEEEEeCCCEEEEEECcCCccceEEEcCcccceeeeeeeeCCEEEEEEccCCeEEEEeCCCCcEeE----EEeccCc
Q 003800 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVW----ESFLRGS 127 (794)
Q Consensus 52 ~~~~Vyv~t~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~tG~llW----e~~l~~~ 127 (794)
++..++.++.+|.|...|..+|+.+-....... .+..+.....+..++.++.++.++.||..++.... +......
T Consensus 66 d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~ 144 (340)
T 1got_B 66 DSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSS-WVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTG 144 (340)
T ss_dssp TSSEEEEEETTTEEEEEETTTCCEEEEEECSSS-CEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSS
T ss_pred CCCEEEEEeCCCcEEEEECCCCCcceEeecCCc-cEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCc
Confidence 466799999999999999999998877655433 23333223344455556667899999998875322 2222221
Q ss_pred cccCCccccccccccccCCeEEEE-ECCEEEEEECCCCcEEEEEeccCcceeeeeEEEEecCCEEEEEE-ecCCceeEEE
Q 003800 128 KHSKPLLLVPTNLKVDKDSLILVS-SKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVG-YAGSSQFHAY 205 (794)
Q Consensus 128 ~~s~~~~~~~~~~~~~~~~~V~V~-~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~s~~~~~vyv~~-~~g~~~~~v~ 205 (794)
.. ..+ ....++.++.. .++.+...|..+|+..-++....... ..+.. ..++.+++.+ .+| .+.
T Consensus 145 ~v----~~~----~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v--~~~~~-~~~~~~l~sg~~d~----~v~ 209 (340)
T 1got_B 145 YL----SCC----RFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDV--MSLSL-APDTRLFVSGACDA----SAK 209 (340)
T ss_dssp CE----EEE----EEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCE--EEEEE-CTTSSEEEEEETTS----CEE
T ss_pred cE----EEE----EECCCCcEEEEECCCcEEEEECCCCcEEEEEcCCCCce--EEEEE-CCCCCEEEEEeCCC----cEE
Confidence 11 111 11114455444 38999999999999887765433322 22221 2334444444 344 678
Q ss_pred EEEcCCCceeeeeeeecccCccCceEEEcCcEEEEEECCCCeEEEEEeecce
Q 003800 206 QINAMNGELLNHETAAFSGGFVGDVALVSSDTLVTLDTTRSILVTVSFKNRK 257 (794)
Q Consensus 206 ald~~tG~~~w~~~v~~~~~~s~~~~~vg~~~lv~~d~~~g~L~v~~l~sg~ 257 (794)
..|..+|+.+...... ...+..-++...++.+++.. ..+.+.+-|+.+++
T Consensus 210 ~wd~~~~~~~~~~~~h-~~~v~~v~~~p~~~~l~s~s-~d~~v~iwd~~~~~ 259 (340)
T 1got_B 210 LWDVREGMCRQTFTGH-ESDINAICFFPNGNAFATGS-DDATCRLFDLRADQ 259 (340)
T ss_dssp EEETTTCSEEEEECCC-SSCEEEEEECTTSSEEEEEE-TTSCEEEEETTTTE
T ss_pred EEECCCCeeEEEEcCC-cCCEEEEEEcCCCCEEEEEc-CCCcEEEEECCCCc
Confidence 8899999877554211 11121111111345666665 46889999998876
No 86
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=97.41 E-value=0.017 Score=59.38 Aligned_cols=155 Identities=9% Similarity=0.024 Sum_probs=104.8
Q ss_pred CEEEEEEcc---CCeEEEEeCCCCcEeEEEeccCccccCCccccccccccccCCeEEEEE--CCEEEEEECCCCcEEEEE
Q 003800 96 KYVITLSSD---GSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSS--KGCLHAVSSIDGEILWTR 170 (794)
Q Consensus 96 ~~~V~Vs~~---g~~v~A~d~~tG~llWe~~l~~~~~s~~~~~~~~~~~~~~~~~V~V~~--~g~l~ald~~tG~~~W~~ 170 (794)
++.+++|+. .+.|+.+|+++|+++=+..+..... +..+ +.. ++.++++. ++.++.+|++|++++=++
T Consensus 30 ~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~f--geGi-----~~~-~~~ly~ltw~~~~v~v~D~~tl~~~~ti 101 (243)
T 3mbr_X 30 RGHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYF--GAGI-----VAW-RDRLIQLTWRNHEGFVYDLATLTPRARF 101 (243)
T ss_dssp TTEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCC--EEEE-----EEE-TTEEEEEESSSSEEEEEETTTTEEEEEE
T ss_pred CCEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcc--eeEE-----EEe-CCEEEEEEeeCCEEEEEECCcCcEEEEE
Confidence 367777642 2589999999999998888765432 1111 223 57788885 899999999999999998
Q ss_pred eccCcceeeeeEEEEecCCEEEEEEecCCceeEEEEEEcCCCceeeeeeeecc-cCcc--CceEEEcCcEEEEEECCCCe
Q 003800 171 DFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAFS-GGFV--GDVALVSSDTLVTLDTTRSI 247 (794)
Q Consensus 171 ~~~~~~~~~~~~v~s~~~~~vyv~~~~g~~~~~v~ald~~tG~~~w~~~v~~~-~~~s--~~~~~vg~~~lv~~d~~~g~ 247 (794)
+.+.... .+ ..+++.+|+.. |+ -+++.+|++|.+.+....+... ..+. +..-.+++.++ +..-.+..
T Consensus 102 ~~~~~Gw---gl--t~dg~~L~vSd--gs--~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~~G~ly-anvw~s~~ 171 (243)
T 3mbr_X 102 RYPGEGW---AL--TSDDSHLYMSD--GT--AVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWVNGELL-ANVWLTSR 171 (243)
T ss_dssp ECSSCCC---EE--EECSSCEEEEC--SS--SEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEE-EEETTTTE
T ss_pred eCCCCce---EE--eeCCCEEEEEC--CC--CeEEEEeCCCCeEEEEEEEccCCcccccceeeEEeCCEEE-EEECCCCe
Confidence 8765332 33 24567788643 42 2789999999999988776542 1111 11222344444 44445678
Q ss_pred EEEEEeecceeeeEEEeecccC
Q 003800 248 LVTVSFKNRKIAFQETHLSNLG 269 (794)
Q Consensus 248 L~v~~l~sg~~~~~~~~l~~l~ 269 (794)
+.++|.++|++ ...+.+..|.
T Consensus 172 I~vIDp~tG~V-~~~idl~~l~ 192 (243)
T 3mbr_X 172 IARIDPASGKV-VAWIDLQALV 192 (243)
T ss_dssp EEEECTTTCBE-EEEEECGGGS
T ss_pred EEEEECCCCCE-EEEEECCcCc
Confidence 99999999984 6777776654
No 87
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.41 E-value=0.03 Score=61.53 Aligned_cols=185 Identities=9% Similarity=0.086 Sum_probs=117.0
Q ss_pred CCCEEEEEeCCCEEEEEECcCCccceEEEcCcccceeeeeeeeCCEEEEEEccCCeEEEEeCCCCcEeEEEeccCccccC
Q 003800 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSK 131 (794)
Q Consensus 52 ~~~~Vyv~t~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~l~~~~~s~ 131 (794)
+++.+++++.+|.|...|.++|+.+.+..... ..+..+ ...++.++.++.++.++.||..++............. .
T Consensus 182 ~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~-~~v~~l--~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~-~ 257 (435)
T 1p22_A 182 DERVIITGSSDSTVRVWDVNTGEMLNTLIHHC-EAVLHL--RFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHR-A 257 (435)
T ss_dssp CSSEEEEEETTSCEEEEESSSCCEEEEECCCC-SCEEEE--ECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCS-S
T ss_pred CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCC-CcEEEE--EEcCCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCC-C
Confidence 46789999999999999999999887754322 234344 2234455556667899999999998764322211110 1
Q ss_pred CccccccccccccCCeEEEEE-CCEEEEEECCCCcEEEEEeccCcceeeeeEEEEecCCEEEEEEecCCceeEEEEEEcC
Q 003800 132 PLLLVPTNLKVDKDSLILVSS-KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAM 210 (794)
Q Consensus 132 ~~~~~~~~~~~~~~~~V~V~~-~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~s~~~~~vyv~~~~g~~~~~v~ald~~ 210 (794)
....+ ..+ ++.+++.+ +|.+...|..+|+...+........ ..+ ...++.++..+.+| .+..+|..
T Consensus 258 ~v~~~----~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v--~~~--~~~~~~l~~g~~dg----~i~iwd~~ 324 (435)
T 1p22_A 258 AVNVV----DFD-DKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGI--ACL--QYRDRLVVSGSSDN----TIRLWDIE 324 (435)
T ss_dssp CEEEE----EEE-TTEEEEEETTSEEEEEETTTCCEEEEEECCSSCE--EEE--EEETTEEEEEETTS----CEEEEETT
T ss_pred cEEEE----EeC-CCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcE--EEE--EeCCCEEEEEeCCC----eEEEEECC
Confidence 11111 222 45555554 8999999999999998887544332 122 23456666555555 68889999
Q ss_pred CCceeeeeeeecccCccCceEEEcCcEEEEEECCCCeEEEEEeecce
Q 003800 211 NGELLNHETAAFSGGFVGDVALVSSDTLVTLDTTRSILVTVSFKNRK 257 (794)
Q Consensus 211 tG~~~w~~~v~~~~~~s~~~~~vg~~~lv~~d~~~g~L~v~~l~sg~ 257 (794)
+|+.+...... ...+ .++...++.+++.. .+|.+.+-|+.++.
T Consensus 325 ~~~~~~~~~~h-~~~v--~~~~~~~~~l~sg~-~dg~i~vwd~~~~~ 367 (435)
T 1p22_A 325 CGACLRVLEGH-EELV--RCIRFDNKRIVSGA-YDGKIKVWDLVAAL 367 (435)
T ss_dssp TCCEEEEECCC-SSCE--EEEECCSSEEEEEE-TTSCEEEEEHHHHT
T ss_pred CCCEEEEEeCC-cCcE--EEEEecCCEEEEEe-CCCcEEEEECCCCC
Confidence 99988766321 1111 12222556676666 46889999987754
No 88
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=97.39 E-value=0.064 Score=56.91 Aligned_cols=189 Identities=13% Similarity=0.047 Sum_probs=109.4
Q ss_pred CCCEEEEEeCCCEEEEEECcCCccceEEE--cC-cccceeeeeeeeCCEEEEEEccCCeEEEEeCCCCcEeEEEeccCcc
Q 003800 52 GRKRVVVSTEENVIASLDLRHGEIFWRHV--LG-INDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSK 128 (794)
Q Consensus 52 ~~~~Vyv~t~~g~l~ALn~~tG~ivWR~~--l~-~~~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~l~~~~ 128 (794)
+++.+++++.++.+...|.++++...+.. +. ..+.+..+....++.+++ ++.++.++.||..+|+.+-........
T Consensus 108 ~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s-~s~d~~i~~wd~~~~~~~~~~~~h~~~ 186 (340)
T 1got_B 108 SGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVT-SSGDTTCALWDIETGQQTTTFTGHTGD 186 (340)
T ss_dssp TSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTEEEE-EETTSCEEEEETTTTEEEEEECCCSSC
T ss_pred CCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCcEEE-EECCCcEEEEECCCCcEEEEEcCCCCc
Confidence 46678889999999999998876544332 21 122233332233444444 555679999999999998777654432
Q ss_pred ccCCccccccccccccCCeEEE-EE-CCEEEEEECCCCcEEEEEeccCcceeeeeEEEEecCCEEEEEEecCCceeEEEE
Q 003800 129 HSKPLLLVPTNLKVDKDSLILV-SS-KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQ 206 (794)
Q Consensus 129 ~s~~~~~~~~~~~~~~~~~V~V-~~-~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~s~~~~~vyv~~~~g~~~~~v~a 206 (794)
. ..+.+ ..++..++ .+ ++.+...|..+|...-++....... ..+..+..+..+...+.+| .+..
T Consensus 187 v-~~~~~-------~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v--~~v~~~p~~~~l~s~s~d~----~v~i 252 (340)
T 1got_B 187 V-MSLSL-------APDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDI--NAICFFPNGNAFATGSDDA----TCRL 252 (340)
T ss_dssp E-EEEEE-------CTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCE--EEEEECTTSSEEEEEETTS----CEEE
T ss_pred e-EEEEE-------CCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCE--EEEEEcCCCCEEEEEcCCC----cEEE
Confidence 2 11111 11344444 33 8999999999999887765433322 2222122334444444444 6888
Q ss_pred EEcCCCceeeeeeeec-ccCccCceEEE-cCcEEEEEECCCCeEEEEEeecce
Q 003800 207 INAMNGELLNHETAAF-SGGFVGDVALV-SSDTLVTLDTTRSILVTVSFKNRK 257 (794)
Q Consensus 207 ld~~tG~~~w~~~v~~-~~~~s~~~~~v-g~~~lv~~d~~~g~L~v~~l~sg~ 257 (794)
+|..+++.+....... ...+. .+.+- .+.++++.. .++.+.+-|+.+++
T Consensus 253 wd~~~~~~~~~~~~~~~~~~v~-~~~~s~~g~~l~~g~-~d~~i~vwd~~~~~ 303 (340)
T 1got_B 253 FDLRADQELMTYSHDNIICGIT-SVSFSKSGRLLLAGY-DDFNCNVWDALKAD 303 (340)
T ss_dssp EETTTTEEEEEECCTTCCSCEE-EEEECTTSSEEEEEE-TTSEEEEEETTTCC
T ss_pred EECCCCcEEEEEccCCcccceE-EEEECCCCCEEEEEC-CCCeEEEEEcccCc
Confidence 8999998776543111 01111 11121 344666655 45788888887765
No 89
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=97.37 E-value=0.045 Score=58.56 Aligned_cols=197 Identities=10% Similarity=0.026 Sum_probs=113.5
Q ss_pred CEEEEEeCCCEEEEEECcCCccc----eEEEcCc-----ccceeeeeee----eCCEE-EEEEccCCeEEEEeCCC----
Q 003800 54 KRVVVSTEENVIASLDLRHGEIF----WRHVLGI-----NDVVDGIDIA----LGKYV-ITLSSDGSTLRAWNLPD---- 115 (794)
Q Consensus 54 ~~Vyv~t~~g~l~ALn~~tG~iv----WR~~l~~-----~~~i~~l~~~----~g~~~-V~Vs~~g~~v~A~d~~t---- 115 (794)
..+++++.+|.|...|.++|+.. ++..... ...+..+... ..+.. ++.++.++.|+.||..+
T Consensus 82 ~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 161 (397)
T 1sq9_A 82 CLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADE 161 (397)
T ss_dssp EEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSH
T ss_pred cEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccc
Confidence 56888899999999999999861 3333222 2334444333 33444 55565667999999998
Q ss_pred --CcEeE-----EEec-------cCccccCCccccccccccccCCeEEEE-ECCEEEEEECCCCcEEEEEec---c---C
Q 003800 116 --GQMVW-----ESFL-------RGSKHSKPLLLVPTNLKVDKDSLILVS-SKGCLHAVSSIDGEILWTRDF---A---A 174 (794)
Q Consensus 116 --G~llW-----e~~l-------~~~~~s~~~~~~~~~~~~~~~~~V~V~-~~g~l~ald~~tG~~~W~~~~---~---~ 174 (794)
++.+. +... ..... ..+ ....++.+++. .+|.+..+|..+++..+.+.. . .
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~-------~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~ 233 (397)
T 1sq9_A 162 SNSLTLNWSPTLELQGTVESPMTPSQFA-TSV-------DISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNS 233 (397)
T ss_dssp HHHTTTCCCCEEEEEEEECCSSSSCCCC-CEE-------EECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC---CCC
T ss_pred cccceeeccCcceeeeeeccccCCCCCc-eEE-------EECCCceEEEEeCCCcEEEEECCCCceeEEEeccccccccC
Confidence 77665 4432 11111 111 12223433333 389999999999999998876 2 2
Q ss_pred cceeeeeEEEEecCCEEEEEEecCCceeEEEEEEcCCCceeeeeeee------------cccCccCceEEE-cCcEEEEE
Q 003800 175 ESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAA------------FSGGFVGDVALV-SSDTLVTL 241 (794)
Q Consensus 175 ~~~~~~~~v~s~~~~~vyv~~~~g~~~~~v~ald~~tG~~~w~~~v~------------~~~~~s~~~~~v-g~~~lv~~ 241 (794)
.. ...+..+..+..+++.+.++ ....+..+|..+|+.+...... ....+. .+.+. .+.++++.
T Consensus 234 ~~--i~~i~~~~~~~~l~~~~~d~-~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~ 309 (397)
T 1sq9_A 234 NS--IRSVKFSPQGSLLAIAHDSN-SFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVM-SLSFNDSGETLCSA 309 (397)
T ss_dssp CC--EEEEEECSSTTEEEEEEEET-TEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEE-EEEECSSSSEEEEE
T ss_pred Cc--cceEEECCCCCEEEEEecCC-CCceEEEEECCCCcccceeccCcccccccccccccCCcEE-EEEECCCCCEEEEE
Confidence 22 22232223444555444441 0027999999999988766431 111111 12221 34566666
Q ss_pred ECCCCeEEEEEeecceeeeEEEe
Q 003800 242 DTTRSILVTVSFKNRKIAFQETH 264 (794)
Q Consensus 242 d~~~g~L~v~~l~sg~~~~~~~~ 264 (794)
. ..|.+++.|+.+++. +..+.
T Consensus 310 ~-~dg~i~iwd~~~~~~-~~~~~ 330 (397)
T 1sq9_A 310 G-WDGKLRFWDVKTKER-ITTLN 330 (397)
T ss_dssp E-TTSEEEEEETTTTEE-EEEEE
T ss_pred e-CCCeEEEEEcCCCce-eEEEe
Confidence 5 468999999998872 44444
No 90
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=97.37 E-value=0.0069 Score=63.09 Aligned_cols=153 Identities=14% Similarity=0.061 Sum_probs=102.3
Q ss_pred CEEEEEE-ccCCeEEEEeCCCCcEeEEEeccCccccCCccccccccccccCCeEEEEE--CCEEEEEECCCCcEEEEEec
Q 003800 96 KYVITLS-SDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSS--KGCLHAVSSIDGEILWTRDF 172 (794)
Q Consensus 96 ~~~V~Vs-~~g~~v~A~d~~tG~llWe~~l~~~~~s~~~~~~~~~~~~~~~~~V~V~~--~g~l~ald~~tG~~~W~~~~ 172 (794)
++.+++| +..+.|+.+|+++|+++-+. +..... +..+ +.. ++.+|++. ++.++.+|++|++++=+++.
T Consensus 64 ~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~F--geGi-----t~~-g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~ 134 (268)
T 3nok_A 64 QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIF--AEGL-----ASD-GERLYQLTWTEGLLFTWSGMPPQRERTTRY 134 (268)
T ss_dssp TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCC--EEEE-----EEC-SSCEEEEESSSCEEEEEETTTTEEEEEEEC
T ss_pred CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcc--eeEE-----EEe-CCEEEEEEccCCEEEEEECCcCcEEEEEeC
Confidence 4567775 44568999999999999998 665432 1111 223 56788875 89999999999999998887
Q ss_pred cCcceeeeeEEEEecCCEEEEEEecCCceeEEEEEEcCCCceeeeeeeecc-cCcc--CceEEEcCcEEEEEECCCCeEE
Q 003800 173 AAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAFS-GGFV--GDVALVSSDTLVTLDTTRSILV 249 (794)
Q Consensus 173 ~~~~~~~~~~v~s~~~~~vyv~~~~g~~~~~v~ald~~tG~~~w~~~v~~~-~~~s--~~~~~vg~~~lv~~d~~~g~L~ 249 (794)
+.... .+ ..+++.+|+.. |+ -++..+|++|++.+....+... ..+. +..-.+++ .+++....++.+.
T Consensus 135 ~~eGw---GL--t~Dg~~L~vSd--Gs--~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~dG-~lyanvw~s~~I~ 204 (268)
T 3nok_A 135 SGEGW---GL--CYWNGKLVRSD--GG--TMLTFHEPDGFALVGAVQVKLRGQPVELINELECANG-VIYANIWHSSDVL 204 (268)
T ss_dssp SSCCC---CE--EEETTEEEEEC--SS--SEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETT-EEEEEETTCSEEE
T ss_pred CCcee---EE--ecCCCEEEEEC--CC--CEEEEEcCCCCeEEEEEEeCCCCcccccccccEEeCC-EEEEEECCCCeEE
Confidence 54322 23 24577888753 32 2899999999999988776542 2221 11223343 4444444567899
Q ss_pred EEEeecceeeeEEEeeccc
Q 003800 250 TVSFKNRKIAFQETHLSNL 268 (794)
Q Consensus 250 v~~l~sg~~~~~~~~l~~l 268 (794)
++|.++|++ ...+.+..|
T Consensus 205 vIDp~TG~V-~~~Idl~~L 222 (268)
T 3nok_A 205 EIDPATGTV-VGVIDASAL 222 (268)
T ss_dssp EECTTTCBE-EEEEECHHH
T ss_pred EEeCCCCcE-EEEEECCCC
Confidence 999999984 566666543
No 91
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=97.36 E-value=0.066 Score=56.08 Aligned_cols=154 Identities=10% Similarity=0.001 Sum_probs=94.2
Q ss_pred CCEEEEEeCCCEEEEEECcCCccceEEEcCcc----cceeeeeeeeC----CEEEEEEccCCeEEEEeCCCCcEeEEEec
Q 003800 53 RKRVVVSTEENVIASLDLRHGEIFWRHVLGIN----DVVDGIDIALG----KYVITLSSDGSTLRAWNLPDGQMVWESFL 124 (794)
Q Consensus 53 ~~~Vyv~t~~g~l~ALn~~tG~ivWR~~l~~~----~~i~~l~~~~g----~~~V~Vs~~g~~v~A~d~~tG~llWe~~l 124 (794)
+..+++++.++.|...|..+|+.+.....-.. ..+..+..... +..++.++.++.|+.||..+|+.+.....
T Consensus 34 ~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~ 113 (366)
T 3k26_A 34 DPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVG 113 (366)
T ss_dssp SCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEES
T ss_pred CceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecC
Confidence 55688888899999999999988766542111 22333322222 34566566678999999999999998875
Q ss_pred cCccccCCccccccccccccCCeEEEEE-CCEEEEEECCCCcEEEEEec-cCcceeeeeEEEEecCCEEEEEEecCCcee
Q 003800 125 RGSKHSKPLLLVPTNLKVDKDSLILVSS-KGCLHAVSSIDGEILWTRDF-AAESVEVQQVIQLDESDQIYVVGYAGSSQF 202 (794)
Q Consensus 125 ~~~~~s~~~~~~~~~~~~~~~~~V~V~~-~g~l~ald~~tG~~~W~~~~-~~~~~~~~~~v~s~~~~~vyv~~~~g~~~~ 202 (794)
..... ..+.+ ....+..++..+ +|.+...|..+|+....... .........+..+..+..++..+.+|
T Consensus 114 ~~~~i-~~~~~-----~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---- 183 (366)
T 3k26_A 114 HGNAI-NELKF-----HPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDH---- 183 (366)
T ss_dssp CCSCE-EEEEE-----CSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTS----
T ss_pred CCCcE-EEEEE-----CCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCC----
Confidence 44332 11111 111134444444 89999999999998888732 11111122332223344555544445
Q ss_pred EEEEEEcCCCceee
Q 003800 203 HAYQINAMNGELLN 216 (794)
Q Consensus 203 ~v~ald~~tG~~~w 216 (794)
.+..+|..+|+.+.
T Consensus 184 ~i~i~d~~~~~~~~ 197 (366)
T 3k26_A 184 SLKLWRINSKRMMN 197 (366)
T ss_dssp CEEEEESCSHHHHH
T ss_pred CEEEEECCCCcccc
Confidence 68888999887664
No 92
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=97.35 E-value=0.0076 Score=62.66 Aligned_cols=154 Identities=9% Similarity=-0.007 Sum_probs=103.6
Q ss_pred CEEEEEEc-cC--CeEEEEeCCCCcEeEEEeccCccccCCccccccccccccCCeEEEEE--CCEEEEEECCCCcEEEEE
Q 003800 96 KYVITLSS-DG--STLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSS--KGCLHAVSSIDGEILWTR 170 (794)
Q Consensus 96 ~~~V~Vs~-~g--~~v~A~d~~tG~llWe~~l~~~~~s~~~~~~~~~~~~~~~~~V~V~~--~g~l~ald~~tG~~~W~~ 170 (794)
++.+++|+ .. +.|+.+|+++|+++=+..+..... +..+ +.. ++.++++. ++.++.+|++|++++=+.
T Consensus 52 ~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~F--geGi-----t~~-g~~ly~ltw~~~~v~v~D~~t~~~~~ti 123 (262)
T 3nol_A 52 NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYF--GEGI-----SDW-KDKIVGLTWKNGLGFVWNIRNLRQVRSF 123 (262)
T ss_dssp TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCC--EEEE-----EEE-TTEEEEEESSSSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccc--eeEE-----EEe-CCEEEEEEeeCCEEEEEECccCcEEEEE
Confidence 45777764 22 489999999999999988765432 1111 233 57888885 899999999999999998
Q ss_pred eccCcceeeeeEEEEecCCEEEEEEecCCceeEEEEEEcCCCceeeeeeeecc----cCccCceEEEcCcEEEEEECCCC
Q 003800 171 DFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAFS----GGFVGDVALVSSDTLVTLDTTRS 246 (794)
Q Consensus 171 ~~~~~~~~~~~~v~s~~~~~vyv~~~~g~~~~~v~ald~~tG~~~w~~~v~~~----~~~s~~~~~vg~~~lv~~d~~~g 246 (794)
+.+.... .+ ..+++.+|+.. |+ -++..+|++|++.+....+... ..+.+ .-.+++ .+.+..-.++
T Consensus 124 ~~~~eG~---gl--t~dg~~L~~Sd--Gs--~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNE-Le~~~G-~lyan~w~~~ 192 (262)
T 3nol_A 124 NYDGEGW---GL--THNDQYLIMSD--GT--PVLRFLDPESLTPVRTITVTAHGEELPELNE-LEWVDG-EIFANVWQTN 192 (262)
T ss_dssp ECSSCCC---CE--EECSSCEEECC--SS--SEEEEECTTTCSEEEEEECEETTEECCCEEE-EEEETT-EEEEEETTSS
T ss_pred ECCCCce---EE--ecCCCEEEEEC--CC--CeEEEEcCCCCeEEEEEEeccCCccccccce-eEEECC-EEEEEEccCC
Confidence 8764322 23 24567777643 32 2789999999999988776431 11222 223343 4444544567
Q ss_pred eEEEEEeecceeeeEEEeecccC
Q 003800 247 ILVTVSFKNRKIAFQETHLSNLG 269 (794)
Q Consensus 247 ~L~v~~l~sg~~~~~~~~l~~l~ 269 (794)
.+.++|.++|++ ...+.+..|.
T Consensus 193 ~I~vIDp~tG~V-~~~Id~~~L~ 214 (262)
T 3nol_A 193 KIVRIDPETGKV-TGIIDLNGIL 214 (262)
T ss_dssp EEEEECTTTCBE-EEEEECTTGG
T ss_pred eEEEEECCCCcE-EEEEECCcCc
Confidence 899999999984 5666665543
No 93
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=97.31 E-value=0.28 Score=53.32 Aligned_cols=185 Identities=10% Similarity=-0.016 Sum_probs=108.2
Q ss_pred cCCCEEEEEeC--CC---EEEEEECcCCccceEEEcCcccceeeeeeeeCCEEEEEEc----------cCCeEEEEeCCC
Q 003800 51 TGRKRVVVSTE--EN---VIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSS----------DGSTLRAWNLPD 115 (794)
Q Consensus 51 ~~~~~Vyv~t~--~g---~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~----------~g~~v~A~d~~t 115 (794)
.+.+++|+++. .+ .|..+|+.||+++=+...+.. . ++.+.-++..++++. .++.|..||+.+
T Consensus 30 ~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~--p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t 106 (373)
T 2mad_H 30 ADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFL--P-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVT 106 (373)
T ss_pred CCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCC--C-CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCC
Confidence 44677999985 33 889999999998755443322 2 443444566777764 246799999999
Q ss_pred CcEeEEEeccCc-c-----ccCCccccccccccccCCeEEEEE---CCEEEEEECCCCcEEEE-EeccCcceeeeeEEEE
Q 003800 116 GQMVWESFLRGS-K-----HSKPLLLVPTNLKVDKDSLILVSS---KGCLHAVSSIDGEILWT-RDFAAESVEVQQVIQL 185 (794)
Q Consensus 116 G~llWe~~l~~~-~-----~s~~~~~~~~~~~~~~~~~V~V~~---~g~l~ald~~tG~~~W~-~~~~~~~~~~~~~v~s 185 (794)
++++-+..+.+. . ....+.+ ..+ ++.+++.. ++.|..+| ++|+++-+ ...+... .+ .
T Consensus 107 ~~~~~~i~~~~~~~~~~g~~p~~~~~-----spD-G~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~~----~~--~ 173 (373)
T 2mad_H 107 FLPIADIELPDAPRFDVGPYSWMNAN-----TPN-NADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTCY----HI--H 173 (373)
T ss_pred CcEEEEEECCCccccccCCCccceEE-----CCC-CCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCceE----EE--E
Confidence 999988877511 0 0011111 223 46677763 47899999 99999876 5544321 11 1
Q ss_pred ecCCEEEEE-EecCCceeEEEEEEcCCCceeeeeeeec----ccCccCceEEE-cCcEEEEEECCCCeEEEEEeecce
Q 003800 186 DESDQIYVV-GYAGSSQFHAYQINAMNGELLNHETAAF----SGGFVGDVALV-SSDTLVTLDTTRSILVTVSFKNRK 257 (794)
Q Consensus 186 ~~~~~vyv~-~~~g~~~~~v~ald~~tG~~~w~~~v~~----~~~~s~~~~~v-g~~~lv~~d~~~g~L~v~~l~sg~ 257 (794)
..+...|+. +.+| ++..+|. +|+..+...... +..+...+.+. .++.+++.. ..+.++++|+.++.
T Consensus 174 ~~~~~~~~~~~~dg----~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-~~~~v~vid~~~~~ 245 (373)
T 2mad_H 174 PGAPSTFYLLCAQG----GLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPV-YSGKILQADISAAG 245 (373)
T ss_pred eCCCceEEEEcCCC----CEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEc-CCceEEEEeccCCc
Confidence 234445543 3333 7888999 999886543111 01110011111 122333333 46789999997654
No 94
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.31 E-value=0.19 Score=59.47 Aligned_cols=148 Identities=10% Similarity=0.006 Sum_probs=85.9
Q ss_pred CCEEEEEEccCCeEEEEeCCCCcEeEEEeccCccccCCccccccccccccCCeEEEEE-CCEEEEEECCCCcEEEEEecc
Q 003800 95 GKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSS-KGCLHAVSSIDGEILWTRDFA 173 (794)
Q Consensus 95 g~~~V~Vs~~g~~v~A~d~~tG~llWe~~l~~~~~s~~~~~~~~~~~~~~~~~V~V~~-~g~l~ald~~tG~~~W~~~~~ 173 (794)
.+..+++++.++.|+.||..+|+.+.+........ ..+.+. .+ +..+++.+ +|.+...|..+|+...+....
T Consensus 24 ~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v-~~~~~s-----~~-~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~ 96 (814)
T 3mkq_A 24 TEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPV-RAGKFI-----AR-KNWIIVGSDDFRIRVFNYNTGEKVVDFEAH 96 (814)
T ss_dssp SSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCE-EEEEEE-----GG-GTEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred CCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcE-EEEEEe-----CC-CCEEEEEeCCCeEEEEECCCCcEEEEEecC
Confidence 44455556666799999999999999888654432 112122 12 34455544 899999999999999888654
Q ss_pred CcceeeeeEEEEecCCEEEEEEecCCceeEEEEEEcCCCceeeeeeeecccCccCceEEE--cCcEEEEEECCCCeEEEE
Q 003800 174 AESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAFSGGFVGDVALV--SSDTLVTLDTTRSILVTV 251 (794)
Q Consensus 174 ~~~~~~~~~v~s~~~~~vyv~~~~g~~~~~v~ald~~tG~~~w~~~v~~~~~~s~~~~~v--g~~~lv~~d~~~g~L~v~ 251 (794)
.... ..+..+..+..++..+.+| .+..+|..+|...-+........+.. +.+- +++.+++.. .+|.+.+.
T Consensus 97 ~~~v--~~~~~s~~~~~l~~~~~dg----~i~vw~~~~~~~~~~~~~~~~~~v~~-~~~~p~~~~~l~~~~-~dg~v~vw 168 (814)
T 3mkq_A 97 PDYI--RSIAVHPTKPYVLSGSDDL----TVKLWNWENNWALEQTFEGHEHFVMC-VAFNPKDPSTFASGC-LDRTVKVW 168 (814)
T ss_dssp SSCE--EEEEECSSSSEEEEEETTS----EEEEEEGGGTSEEEEEEECCSSCEEE-EEEETTEEEEEEEEE-TTSEEEEE
T ss_pred CCCE--EEEEEeCCCCEEEEEcCCC----EEEEEECCCCceEEEEEcCCCCcEEE-EEEEcCCCCEEEEEe-CCCeEEEE
Confidence 3322 2222222344455444344 78888988874332221111122211 1221 233555554 46889999
Q ss_pred Eeecce
Q 003800 252 SFKNRK 257 (794)
Q Consensus 252 ~l~sg~ 257 (794)
++.++.
T Consensus 169 d~~~~~ 174 (814)
T 3mkq_A 169 SLGQST 174 (814)
T ss_dssp ETTCSS
T ss_pred ECCCCc
Confidence 987765
No 95
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=97.30 E-value=0.092 Score=65.82 Aligned_cols=155 Identities=13% Similarity=0.091 Sum_probs=90.7
Q ss_pred CCEEEEEEccCCeEEEEeCCCCcEeEEEeccCccccCCccccccccccccCCeEEEEE-CCEEEEEECCCCcEEEEEecc
Q 003800 95 GKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSS-KGCLHAVSSIDGEILWTRDFA 173 (794)
Q Consensus 95 g~~~V~Vs~~g~~v~A~d~~tG~llWe~~l~~~~~s~~~~~~~~~~~~~~~~~V~V~~-~g~l~ald~~tG~~~W~~~~~ 173 (794)
++..++.++.++.|+.||..+|+.+.+........ ..+.+.+ + ++.++..+ +|.+...|..+|+.+.++...
T Consensus 626 ~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v-~~~~~s~-----~-~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~ 698 (1249)
T 3sfz_A 626 DGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEV-LCCAFSS-----D-DSYIATCSADKKVKIWDSATGKLVHTYDEH 698 (1249)
T ss_dssp TSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCE-EEEEECT-----T-SSEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred CCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCE-EEEEEec-----C-CCEEEEEeCCCeEEEEECCCCceEEEEcCC
Confidence 44455555566799999999999998887554332 1111111 2 23444444 899999999999999888755
Q ss_pred CcceeeeeEEEEec-CCEEEEEEecCCceeEEEEEEcCCCceeeeeeeecccCccCceEE-EcCcEEEEEECCCCeEEEE
Q 003800 174 AESVEVQQVIQLDE-SDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAFSGGFVGDVAL-VSSDTLVTLDTTRSILVTV 251 (794)
Q Consensus 174 ~~~~~~~~~v~s~~-~~~vyv~~~~g~~~~~v~ald~~tG~~~w~~~v~~~~~~s~~~~~-vg~~~lv~~d~~~g~L~v~ 251 (794)
.... ..+..+.. ++.+++.+...+ .+...|..+|+.+....- ....+.. +.+ ..+..+++.. ..|.+.+-
T Consensus 699 ~~~v--~~~~~~~~~~~~~l~sg~~d~---~v~vwd~~~~~~~~~~~~-h~~~v~~-~~~sp~~~~l~s~s-~dg~v~vw 770 (1249)
T 3sfz_A 699 SEQV--NCCHFTNKSNHLLLATGSNDF---FLKLWDLNQKECRNTMFG-HTNSVNH-CRFSPDDELLASCS-ADGTLRLW 770 (1249)
T ss_dssp SSCE--EEEEECSSSSCCEEEEEETTS---CEEEEETTSSSEEEEECC-CSSCEEE-EEECSSTTEEEEEE-SSSEEEEE
T ss_pred CCcE--EEEEEecCCCceEEEEEeCCC---eEEEEECCCcchhheecC-CCCCEEE-EEEecCCCEEEEEE-CCCeEEEE
Confidence 4332 12221122 233333333322 688889999987765531 1111211 112 1345666665 35889999
Q ss_pred EeecceeeeEEEee
Q 003800 252 SFKNRKIAFQETHL 265 (794)
Q Consensus 252 ~l~sg~~~~~~~~l 265 (794)
|+.+++ ....+..
T Consensus 771 d~~~~~-~~~~~~~ 783 (1249)
T 3sfz_A 771 DVRSAN-ERKSINV 783 (1249)
T ss_dssp EGGGTE-EEEEEEC
T ss_pred eCCCCc-ccceecc
Confidence 999887 2444443
No 96
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=97.28 E-value=0.0056 Score=66.02 Aligned_cols=193 Identities=13% Similarity=0.165 Sum_probs=104.3
Q ss_pred CCEEEEEeCCCEEEEEECcCCccceEEEcC---cccceeeeeeeeCCEEEEEEccCCeEEEEeCCCCcEeEEEeccCccc
Q 003800 53 RKRVVVSTEENVIASLDLRHGEIFWRHVLG---INDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKH 129 (794)
Q Consensus 53 ~~~Vyv~t~~g~l~ALn~~tG~ivWR~~l~---~~~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~l~~~~~ 129 (794)
++++++++.+|.|.-.|.++|+..-...+. ....+..+.....+..++.++.++.|+.||..+|+.+..........
T Consensus 105 d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v 184 (357)
T 4g56_B 105 EKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEV 184 (357)
T ss_dssp TTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCE
T ss_pred CCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCE
Confidence 678889999999998899888765433221 12234444323334445445556799999999999999887654332
Q ss_pred cCCccccccccccccCCeEEEE-ECCEEEEEECCCCcEEEEEeccCcceeeeeEEEEecCCEEEEEEecCCceeEEEEEE
Q 003800 130 SKPLLLVPTNLKVDKDSLILVS-SKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQIN 208 (794)
Q Consensus 130 s~~~~~~~~~~~~~~~~~V~V~-~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~s~~~~~vyv~~~~g~~~~~v~ald 208 (794)
..+.+. .+.+..++.. .+|.+...|..+|++.-..........+..+..+..++.+++.+...+ .+..+|
T Consensus 185 -~~v~~s-----~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~---~i~~wd 255 (357)
T 4g56_B 185 -NCVAAC-----PGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETG---NVSLVN 255 (357)
T ss_dssp -EEEEEC-----TTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSS---CEEEEE
T ss_pred -EEEEEc-----cCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeeccc---ceeEEE
Confidence 111111 1212233333 388898889888876544333222211222322223455555443322 688889
Q ss_pred cCCCceeeeeeeecccCccCceEEE--cCcEEEEEECCCCeEEEEEeecce
Q 003800 209 AMNGELLNHETAAFSGGFVGDVALV--SSDTLVTLDTTRSILVTVSFKNRK 257 (794)
Q Consensus 209 ~~tG~~~w~~~v~~~~~~s~~~~~v--g~~~lv~~d~~~g~L~v~~l~sg~ 257 (794)
..+|+.+....... ..+. .+.+- +..+++... ..+.+++-|+.+++
T Consensus 256 ~~~~~~~~~~~~~~-~~v~-~l~~sp~~~~~lasgs-~D~~i~iwd~~~~~ 303 (357)
T 4g56_B 256 IKNPDSAQTSAVHS-QNIT-GLAYSYHSSPFLASIS-EDCTVAVLDADFSE 303 (357)
T ss_dssp SSCGGGCEEECCCS-SCEE-EEEECSSSSCCEEEEE-TTSCEEEECTTSCE
T ss_pred CCCCcEeEEEeccc-eeEE-EEEEcCCCCCEEEEEe-CCCEEEEEECCCCc
Confidence 99998876553211 1111 12221 334565554 45889999998887
No 97
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=97.28 E-value=0.041 Score=56.38 Aligned_cols=183 Identities=13% Similarity=0.100 Sum_probs=110.5
Q ss_pred CCCEEEEEeCCCEEEEEECcCCccceEEEcCcccceeeeeeee-CCEEEEEEccCCeEEEEeCCCCcEeEEEec-cCccc
Q 003800 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIAL-GKYVITLSSDGSTLRAWNLPDGQMVWESFL-RGSKH 129 (794)
Q Consensus 52 ~~~~Vyv~t~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~-g~~~V~Vs~~g~~v~A~d~~tG~llWe~~l-~~~~~ 129 (794)
+++.+++++.+|.|...| +++..+....... .+..+.... .+..++.++.++.++.|| .++..-.... .....
T Consensus 113 ~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i 187 (313)
T 3odt_A 113 QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNA-SVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVV 187 (313)
T ss_dssp ETTEEEEEETTSEEEEEE--TTEEEEEEECCSS-CEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCE
T ss_pred cCCEEEEEeCCCCEEEEc--CCcEEEecccCCC-ceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccE
Confidence 366799999999999999 7888777765433 232221122 444555566567999999 5666655554 22111
Q ss_pred cCCccccccccccccCCeEEEE-ECCEEEEEECCCCcEEEEEeccCcceeeeeEEEEecCCEEEEEEecCCceeEEEEEE
Q 003800 130 SKPLLLVPTNLKVDKDSLILVS-SKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQIN 208 (794)
Q Consensus 130 s~~~~~~~~~~~~~~~~~V~V~-~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~s~~~~~vyv~~~~g~~~~~v~ald 208 (794)
..+ ....++.+++. .+|.+..+|..+|+.+.++....... ..+.. ..++.++..+.+| .+..+|
T Consensus 188 ----~~~----~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i--~~~~~-~~~~~l~~~~~dg----~v~iwd 252 (313)
T 3odt_A 188 ----RHL----AVVDDGHFISCSNDGLIKLVDMHTGDVLRTYEGHESFV--YCIKL-LPNGDIVSCGEDR----TVRIWS 252 (313)
T ss_dssp ----EEE----EEEETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCE--EEEEE-CTTSCEEEEETTS----EEEEEC
T ss_pred ----EEE----EEcCCCeEEEccCCCeEEEEECCchhhhhhhhcCCceE--EEEEE-ecCCCEEEEecCC----EEEEEE
Confidence 111 11224455544 49999999999999999887544332 22321 2344555555455 799999
Q ss_pred cCCCceeeeeeeecccCccCceEEEcCcEEEEEECCCCeEEEEEeecce
Q 003800 209 AMNGELLNHETAAFSGGFVGDVALVSSDTLVTLDTTRSILVTVSFKNRK 257 (794)
Q Consensus 209 ~~tG~~~w~~~v~~~~~~s~~~~~vg~~~lv~~d~~~g~L~v~~l~sg~ 257 (794)
..+|+.+....... ..+. .+.+..++.+++.. ..|.+++.++.+++
T Consensus 253 ~~~~~~~~~~~~~~-~~i~-~~~~~~~~~~~~~~-~dg~i~iw~~~~~~ 298 (313)
T 3odt_A 253 KENGSLKQVITLPA-ISIW-SVDCMSNGDIIVGS-SDNLVRIFSQEKSR 298 (313)
T ss_dssp TTTCCEEEEEECSS-SCEE-EEEECTTSCEEEEE-TTSCEEEEESCGGG
T ss_pred CCCCceeEEEeccC-ceEE-EEEEccCCCEEEEe-CCCcEEEEeCCCCc
Confidence 99999887764221 1111 12222222244444 46889999998876
No 98
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=97.27 E-value=0.012 Score=60.53 Aligned_cols=150 Identities=11% Similarity=0.051 Sum_probs=95.8
Q ss_pred CCCEEEEEeCCCEEEEEECcCCccceEEEcCcccceeeeeeeeCCEEEEEEccCCeEEEEeCCCCcEeEEEeccCccccC
Q 003800 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSK 131 (794)
Q Consensus 52 ~~~~Vyv~t~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~l~~~~~s~ 131 (794)
.++.+++++.+|.|...| .++..-+........+..+....++. ++.++.++.++.||..+|+++.+........ .
T Consensus 154 ~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i-~ 229 (313)
T 3odt_A 154 SENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFV-Y 229 (313)
T ss_dssp TTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCE-E
T ss_pred CCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceE-E
Confidence 467899999999999999 44444444332333344443334444 5546666899999999999999987654432 1
Q ss_pred CccccccccccccCCeEEEE-ECCEEEEEECCCCcEEEEEeccCcceeeeeEEEEecCCEEEEEEecCCceeEEEEEEcC
Q 003800 132 PLLLVPTNLKVDKDSLILVS-SKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAM 210 (794)
Q Consensus 132 ~~~~~~~~~~~~~~~~V~V~-~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~s~~~~~vyv~~~~g~~~~~v~ald~~ 210 (794)
.+.+ ..++.++.. .+|.+...|..+|+............ ..+.. ..++.+++.+.+| .+..+|..
T Consensus 230 ~~~~-------~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i--~~~~~-~~~~~~~~~~~dg----~i~iw~~~ 295 (313)
T 3odt_A 230 CIKL-------LPNGDIVSCGEDRTVRIWSKENGSLKQVITLPAISI--WSVDC-MSNGDIIVGSSDN----LVRIFSQE 295 (313)
T ss_dssp EEEE-------CTTSCEEEEETTSEEEEECTTTCCEEEEEECSSSCE--EEEEE-CTTSCEEEEETTS----CEEEEESC
T ss_pred EEEE-------ecCCCEEEEecCCEEEEEECCCCceeEEEeccCceE--EEEEE-ccCCCEEEEeCCC----cEEEEeCC
Confidence 1112 113445555 49999999999999999887765432 22321 3445555555455 68888999
Q ss_pred CCceeeeee
Q 003800 211 NGELLNHET 219 (794)
Q Consensus 211 tG~~~w~~~ 219 (794)
+|+.+.+..
T Consensus 296 ~~~~~~~~~ 304 (313)
T 3odt_A 296 KSRWASEDE 304 (313)
T ss_dssp GGGCCC---
T ss_pred CCceeehhh
Confidence 888776654
No 99
>3hx6_A Type 4 fimbrial biogenesis protein PILY1; beta propeller, pilus protein, cell adhesion; 2.10A {Pseudomonas aeruginosa}
Probab=97.26 E-value=0.0095 Score=68.05 Aligned_cols=155 Identities=17% Similarity=0.313 Sum_probs=94.5
Q ss_pred CCEEEEEeCCCEEEEEECcCCccceEEEcCc----------cc--------ceeeeee----eeCC--EEEEEEc---cC
Q 003800 53 RKRVVVSTEENVIASLDLRHGEIFWRHVLGI----------ND--------VVDGIDI----ALGK--YVITLSS---DG 105 (794)
Q Consensus 53 ~~~Vyv~t~~g~l~ALn~~tG~ivWR~~l~~----------~~--------~i~~l~~----~~g~--~~V~Vs~---~g 105 (794)
...||+++.+|.|.|+|+. |+++|.+.=.+ +. -+++.+. ..++ ..+.+++ .|
T Consensus 85 ~~~VyvGaNDGmLHaF~a~-G~E~wAfiP~~~l~~L~~l~~~~y~~~~h~Y~VDG~p~~~Dv~~~g~wrtvLvggmg~GG 163 (570)
T 3hx6_A 85 APRVYVGANDGMLHGFDTD-GNETFAFIPSAVFEKMHKLTARGYQGGAHQFYVDGSPVVADAFFGGAWHTVLIGSLRAGG 163 (570)
T ss_dssp CCEEEEECSSSCEEECCSS-CCCCEEECCHHHHHHCC-------CCHHHHHHHHCCCEEEEEEETTEEEEEEEEECTTSC
T ss_pred ccEEEEECCCceEEEECCC-CcEEEEECCHHHHHHHHHHhccCccccCcceecCCCCEEEEEEeCCcceEEEEEecCCCC
Confidence 3579999999999999998 99999986321 10 0111111 1222 3344443 35
Q ss_pred CeEEEEeCCC---CcEeEEEeccCc-cc--cCCccccccccccccCCeEEEEEC--------CEEEEEECCCCcEEEEEe
Q 003800 106 STLRAWNLPD---GQMVWESFLRGS-KH--SKPLLLVPTNLKVDKDSLILVSSK--------GCLHAVSSIDGEILWTRD 171 (794)
Q Consensus 106 ~~v~A~d~~t---G~llWe~~l~~~-~~--s~~~~~~~~~~~~~~~~~V~V~~~--------g~l~ald~~tG~~~W~~~ 171 (794)
..++|+|..+ .+++||...... .+ .-+.|.+. ....++-++++.+ ..|+.+|+.+|+.+|+..
T Consensus 164 ~~~yALDVT~P~~p~~LWe~~~~~~~~LG~t~s~P~I~---~~~~g~w~~vfG~GY~~~~~~~~Lyv~d~~tG~li~~i~ 240 (570)
T 3hx6_A 164 KGLFALDVTDPANIKLLWEIGVDQEPDLGYSFPKPTVA---RLHNGKWAVVTGNGYSSMNDKAALLIIDMETGAITRKLE 240 (570)
T ss_dssp SEEEEEECSSGGGCEEEEEEETTTCTTCCBCCSCCEEE---ECTTSSEEEEEECCBSCTTCCEEEEEEETTTCCEEEEEE
T ss_pred cEEEEEECCCCCCCceeEEECCCCccccCccccCCEEE---EecCCCEEEEEccccCCCCCccEEEEEECCCCceEEEEe
Confidence 7899999776 899999983221 11 11222332 2222455555543 389999999999999987
Q ss_pred ccCcc-----eeeeeEEEEe---cCCEEEEEEecCCceeEEEEEEcCCCcee
Q 003800 172 FAAES-----VEVQQVIQLD---ESDQIYVVGYAGSSQFHAYQINAMNGELL 215 (794)
Q Consensus 172 ~~~~~-----~~~~~~v~s~---~~~~vyv~~~~g~~~~~v~ald~~tG~~~ 215 (794)
.+... +....+++.- ..+.+|+....| .|.-+|+.+...-
T Consensus 241 ~~~~~~~~~Gls~~~~~D~d~Dg~~D~~YaGDl~G----nlWRfDl~~~~~~ 288 (570)
T 3hx6_A 241 VTGRTGVPNGLSSPRLADNNSDGVADYAYAGDLQG----NLWRFDLIAGKVN 288 (570)
T ss_dssp ECCSTTSCCCEEEEEEECTTSSSBCCEEEEEETTS----EEEEEECSCSSCC
T ss_pred cCCCCccCCccccceEEecCCCCceeEEEEEeCCC----cEEEEEcCCCCcc
Confidence 65321 1111122111 135788866666 8999999877653
No 100
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=97.20 E-value=0.078 Score=55.39 Aligned_cols=195 Identities=9% Similarity=0.081 Sum_probs=109.7
Q ss_pred CCEEEEEeCCCEEEEEECcCCc-cceEEEcCcccceeeee------eeeCCEEEEEEccCCeEEEEeCCCCc-EeEEEec
Q 003800 53 RKRVVVSTEENVIASLDLRHGE-IFWRHVLGINDVVDGID------IALGKYVITLSSDGSTLRAWNLPDGQ-MVWESFL 124 (794)
Q Consensus 53 ~~~Vyv~t~~g~l~ALn~~tG~-ivWR~~l~~~~~i~~l~------~~~g~~~V~Vs~~g~~v~A~d~~tG~-llWe~~l 124 (794)
++.+++++.+|.|...|.++|+ .+....- ....+..+. ...++..++.++.++.++.||..+|+ .+.....
T Consensus 80 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~ 158 (357)
T 3i2n_A 80 QRYLATGDFGGNLHIWNLEAPEMPVYSVKG-HKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEP 158 (357)
T ss_dssp TCCEEEEETTSCEEEECTTSCSSCSEEECC-CSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECC
T ss_pred CceEEEecCCCeEEEEeCCCCCccEEEEEe-cccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccc
Confidence 3668999999999999999998 6555432 222233221 11233455545566799999999997 6666654
Q ss_pred cCccccCCccccccccccccCC-eEEEEE-CCEEEEEECCCCcEEEEEeccCcceeeeeEEEEe---cCCEEEEEEecCC
Q 003800 125 RGSKHSKPLLLVPTNLKVDKDS-LILVSS-KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLD---ESDQIYVVGYAGS 199 (794)
Q Consensus 125 ~~~~~s~~~~~~~~~~~~~~~~-~V~V~~-~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~s~---~~~~vyv~~~~g~ 199 (794)
...........+........++ .+++.+ +|.+..+|..+++..+......+. ..+.... .++.+++.+.+|
T Consensus 159 ~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v---~~~~~~~~~~~~~~l~~~~~dg- 234 (357)
T 3i2n_A 159 VQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGV---CSLEFDRKDISMNKLVATSLEG- 234 (357)
T ss_dssp CTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCE---EEEEESCSSSSCCEEEEEESTT-
T ss_pred cCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCCCCce---EEEEcCCCCCCCCEEEEECCCC-
Confidence 3321101111110000011133 344444 799999999999998886654432 2232222 345555544444
Q ss_pred ceeEEEEEEcCCCceeeeeeeec----ccCccCceEEEc-Cc-EEEEEECCCCeEEEEEeecce
Q 003800 200 SQFHAYQINAMNGELLNHETAAF----SGGFVGDVALVS-SD-TLVTLDTTRSILVTVSFKNRK 257 (794)
Q Consensus 200 ~~~~v~ald~~tG~~~w~~~v~~----~~~~s~~~~~vg-~~-~lv~~d~~~g~L~v~~l~sg~ 257 (794)
.+..+|..+++.+....... ...+. .+.+.. +. ++++.. ..|.+++-++.++.
T Consensus 235 ---~i~i~d~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~ 293 (357)
T 3i2n_A 235 ---KFHVFDMRTQHPTKGFASVSEKAHKSTVW-QVRHLPQNRELFLTAG-GAGGLHLWKYEYPI 293 (357)
T ss_dssp ---EEEEEEEEEEETTTEEEEEEEECCSSCEE-EEEEETTEEEEEEEEE-TTSEEEEEEEECCS
T ss_pred ---eEEEEeCcCCCcccceeeeccCCCcCCEE-EEEECCCCCcEEEEEe-CCCcEEEeecCCCc
Confidence 78888888887765553211 11111 122222 22 455555 46889988888765
No 101
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=97.18 E-value=0.2 Score=50.91 Aligned_cols=183 Identities=11% Similarity=0.140 Sum_probs=99.1
Q ss_pred CCEEEEEeC-CCEEEEEECcCCccceEEEcCcc-cceeeeeeeeCCEEEEEEc-cCCeEEEEeCCCCcEeEEEeccCccc
Q 003800 53 RKRVVVSTE-ENVIASLDLRHGEIFWRHVLGIN-DVVDGIDIALGKYVITLSS-DGSTLRAWNLPDGQMVWESFLRGSKH 129 (794)
Q Consensus 53 ~~~Vyv~t~-~g~l~ALn~~tG~ivWR~~l~~~-~~i~~l~~~~g~~~V~Vs~-~g~~v~A~d~~tG~llWe~~l~~~~~ 129 (794)
++++|+++. .+.|..+|+. |+.. +..+... ..+.++. ...++.++++. .++.|+.||+. |+.. ...+....
T Consensus 25 ~g~l~v~~~~~~~v~~~d~~-~~~~-~~~~~~~~~~~~~i~-~~~~g~l~v~~~~~~~i~~~~~~-g~~~-~~~~~~~~- 98 (299)
T 2z2n_A 25 KGKVWITQHKANMISCINLD-GKIT-EYPLPTPDAKVMCLT-ISSDGEVWFTENAANKIGRITKK-GIIK-EYTLPNPD- 98 (299)
T ss_dssp TSCEEEEETTTTEEEEECTT-CCEE-EEECSSTTCCEEEEE-ECTTSCEEEEETTTTEEEEECTT-SCEE-EEECSSTT-
T ss_pred CCCEEEEecCCCcEEEEcCC-CCeE-EecCCcccCceeeEE-ECCCCCEEEeCCCCCeEEEECCC-CcEE-EEeCCCcC-
Confidence 678999987 6899999998 7643 3333222 2233342 22344455554 35789999986 6542 22222111
Q ss_pred cCCccccccccccccCCeEEEEE--CCEEEEEECCCCcEEEEEeccCcceeeeeEEEEecCCEEEEEEecCCceeEEEEE
Q 003800 130 SKPLLLVPTNLKVDKDSLILVSS--KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQI 207 (794)
Q Consensus 130 s~~~~~~~~~~~~~~~~~V~V~~--~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~s~~~~~vyv~~~~g~~~~~v~al 207 (794)
..+..+ ..+.++.+++.. ++.++++|. +|+.... ..+.....+..+. ...++.+|+.....+ .+..+
T Consensus 99 -~~~~~i----~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~-~~~~~~~~~~~i~-~~~~g~l~v~~~~~~---~i~~~ 167 (299)
T 2z2n_A 99 -SAPYGI----TEGPNGDIWFTEMNGNRIGRITD-DGKIREY-ELPNKGSYPSFIT-LGSDNALWFTENQNN---AIGRI 167 (299)
T ss_dssp -CCEEEE----EECTTSCEEEEETTTTEEEEECT-TCCEEEE-ECSSTTCCEEEEE-ECTTSCEEEEETTTT---EEEEE
T ss_pred -CCceee----EECCCCCEEEEecCCceEEEECC-CCCEEEe-cCCCCCCCCceEE-EcCCCCEEEEeCCCC---EEEEE
Confidence 111111 233356787764 689999998 7876532 2222222233443 234678888664433 78999
Q ss_pred EcCCCceeeeeeeecccCccC-ceEEE-cCcEEEEEECCCCeEEEEEeecce
Q 003800 208 NAMNGELLNHETAAFSGGFVG-DVALV-SSDTLVTLDTTRSILVTVSFKNRK 257 (794)
Q Consensus 208 d~~tG~~~w~~~v~~~~~~s~-~~~~v-g~~~lv~~d~~~g~L~v~~l~sg~ 257 (794)
|+ +|+...- ..+..... ..+.+ .++.+.+.+...+.+..++. +++
T Consensus 168 ~~-~g~~~~~---~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~ 214 (299)
T 2z2n_A 168 TE-SGDITEF---KIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGE 214 (299)
T ss_dssp CT-TCCEEEE---ECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCC
T ss_pred cC-CCcEEEe---eCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCc
Confidence 99 8876532 12222221 11222 22334445545567888887 666
No 102
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=97.17 E-value=0.29 Score=50.61 Aligned_cols=188 Identities=14% Similarity=0.186 Sum_probs=94.2
Q ss_pred CCEEEEE-eCCCEEEEEECc-CCccceEEEcCcccceeeeeeeeCCEEEEEEcc-CCeEEEEeCC--CCcEe--EEEecc
Q 003800 53 RKRVVVS-TEENVIASLDLR-HGEIFWRHVLGINDVVDGIDIALGKYVITLSSD-GSTLRAWNLP--DGQMV--WESFLR 125 (794)
Q Consensus 53 ~~~Vyv~-t~~g~l~ALn~~-tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~~-g~~v~A~d~~--tG~ll--We~~l~ 125 (794)
++.+|++ +.++.|..+|.. +|+..=.+.+.....+..+....++..+++++. ++.++.|+.. +|++. -+....
T Consensus 4 ~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 83 (343)
T 1ri6_A 4 KQTVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALP 83 (343)
T ss_dssp EEEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECS
T ss_pred eEEEEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccC
Confidence 3457877 568899999874 564322222222222333322334444555443 4799999887 77744 233322
Q ss_pred CccccCCccccccccccccCCeEEEEE--CCEEEEEECCCCc---EEEEEeccCcceeeeeEEEEecCCEEEEEEecCCc
Q 003800 126 GSKHSKPLLLVPTNLKVDKDSLILVSS--KGCLHAVSSIDGE---ILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSS 200 (794)
Q Consensus 126 ~~~~s~~~~~~~~~~~~~~~~~V~V~~--~g~l~ald~~tG~---~~W~~~~~~~~~~~~~~v~s~~~~~vyv~~~~g~~ 200 (794)
... ..+.+. .+ ++.+++.. ++.+..+|..+|. .......... +..+..+..+..+|+.+...+
T Consensus 84 ~~~--~~~~~s-----~d-g~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~---~~~~~~s~dg~~l~~~~~~~~- 151 (343)
T 1ri6_A 84 GSL--THISTD-----HQ-GQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDG---CHSANISPDNRTLWVPALKQD- 151 (343)
T ss_dssp SCC--SEEEEC-----TT-SSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTT---BCCCEECTTSSEEEEEEGGGT-
T ss_pred CCC--cEEEEc-----CC-CCEEEEEecCCCeEEEEECCCCccccccccccCCCC---ceEEEECCCCCEEEEecCCCC-
Confidence 211 111111 12 34466653 7788888875443 3333322211 222322334556777652322
Q ss_pred eeEEEEEEcCC-Cceeeee--eeecccCccC-ceEEE-cCcEEEEEECCCCeEEEEEee
Q 003800 201 QFHAYQINAMN-GELLNHE--TAAFSGGFVG-DVALV-SSDTLVTLDTTRSILVTVSFK 254 (794)
Q Consensus 201 ~~~v~ald~~t-G~~~w~~--~v~~~~~~s~-~~~~v-g~~~lv~~d~~~g~L~v~~l~ 254 (794)
.+..+|..+ |+..... ....+.+... .+.+- .+..+++.+...+.+.+.++.
T Consensus 152 --~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~ 208 (343)
T 1ri6_A 152 --RICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELK 208 (343)
T ss_dssp --EEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESS
T ss_pred --EEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEec
Confidence 678888877 7654322 2222211111 12222 334566666667889999884
No 103
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=97.17 E-value=0.15 Score=54.56 Aligned_cols=191 Identities=12% Similarity=0.062 Sum_probs=105.3
Q ss_pred CCCEEEEEeCCCEEEEEECcCCccceEEEcCcc-----------------------------------------------
Q 003800 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVLGIN----------------------------------------------- 84 (794)
Q Consensus 52 ~~~~Vyv~t~~g~l~ALn~~tG~ivWR~~l~~~----------------------------------------------- 84 (794)
++.+++.++.+|.|.-.|..+|+..-.......
T Consensus 75 d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~ 154 (354)
T 2pbi_B 75 DKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHT 154 (354)
T ss_dssp TSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECS
T ss_pred CCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccC
Confidence 456788888999999888888875443332110
Q ss_pred cceeeeeeeeCCEEEEEEccCCeEEEEeCCCCcEeEEEeccCccccCCccccccccccccCCeEEE-EE-CCEEEEEECC
Q 003800 85 DVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILV-SS-KGCLHAVSSI 162 (794)
Q Consensus 85 ~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~l~~~~~s~~~~~~~~~~~~~~~~~V~V-~~-~g~l~ald~~ 162 (794)
..+..+.....+..++.++.++.++.||..+|+.+-......... ....+ ....++..++ .+ +|.+...|..
T Consensus 155 ~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v-~~~~~-----~~~~~g~~l~sgs~Dg~v~~wd~~ 228 (354)
T 2pbi_B 155 NYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADV-LCLDL-----APSETGNTFVSGGCDKKAMVWDMR 228 (354)
T ss_dssp SCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCE-EEEEE-----CCCSSCCEEEEEETTSCEEEEETT
T ss_pred CcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCe-EEEEE-----EeCCCCCEEEEEeCCCeEEEEECC
Confidence 001111111122234334456799999999999887766544322 11111 1121233444 44 9999999999
Q ss_pred CCcEEEEEeccCcceeeeeEEEEecCCEEEEEEecCCceeEEEEEEcCCCceeeeeeeecccCccC--ceEEE-cCcEEE
Q 003800 163 DGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAFSGGFVG--DVALV-SSDTLV 239 (794)
Q Consensus 163 tG~~~W~~~~~~~~~~~~~~v~s~~~~~vyv~~~~g~~~~~v~ald~~tG~~~w~~~v~~~~~~s~--~~~~v-g~~~lv 239 (794)
+|+..-.+....... ..+.....+..++..+.+| .+..+|..+++.+..... .....+ .+.+- .+..++
T Consensus 229 ~~~~~~~~~~h~~~v--~~v~~~p~~~~l~s~s~D~----~v~lwd~~~~~~~~~~~~--~~~~~~~~~~~~s~~g~~l~ 300 (354)
T 2pbi_B 229 SGQCVQAFETHESDV--NSVRYYPSGDAFASGSDDA----TCRLYDLRADREVAIYSK--ESIIFGASSVDFSLSGRLLF 300 (354)
T ss_dssp TCCEEEEECCCSSCE--EEEEECTTSSEEEEEETTS----CEEEEETTTTEEEEEECC--TTCCSCEEEEEECTTSSEEE
T ss_pred CCcEEEEecCCCCCe--EEEEEeCCCCEEEEEeCCC----eEEEEECCCCcEEEEEcC--CCcccceeEEEEeCCCCEEE
Confidence 999877765433322 2222122344444444444 677889888876543321 111111 11221 344565
Q ss_pred EEECCCCeEEEEEeecce
Q 003800 240 TLDTTRSILVTVSFKNRK 257 (794)
Q Consensus 240 ~~d~~~g~L~v~~l~sg~ 257 (794)
+.. ..+.+++-|+.+++
T Consensus 301 ~g~-~d~~i~vwd~~~~~ 317 (354)
T 2pbi_B 301 AGY-NDYTINVWDVLKGS 317 (354)
T ss_dssp EEE-TTSCEEEEETTTCS
T ss_pred EEE-CCCcEEEEECCCCc
Confidence 555 45788888887776
No 104
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=97.11 E-value=0.065 Score=58.01 Aligned_cols=187 Identities=15% Similarity=0.111 Sum_probs=101.4
Q ss_pred EeCCCEEEEEECcCCccc---eEEEcCcccceeeeeeee-CCEEEEEEccCCeEEEEeCCCC-------cEeEEEeccCc
Q 003800 59 STEENVIASLDLRHGEIF---WRHVLGINDVVDGIDIAL-GKYVITLSSDGSTLRAWNLPDG-------QMVWESFLRGS 127 (794)
Q Consensus 59 ~t~~g~l~ALn~~tG~iv---WR~~l~~~~~i~~l~~~~-g~~~V~Vs~~g~~v~A~d~~tG-------~llWe~~l~~~ 127 (794)
++.+|.|...|..+.... .+........+..+.... ++..++.++.++.|+.||..+| +.+........
T Consensus 53 ~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~ 132 (402)
T 2aq5_A 53 ASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTK 132 (402)
T ss_dssp CSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSS
T ss_pred EcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCC
Confidence 466889999987543221 111111122344442222 4456665666789999999999 44555544332
Q ss_pred cccCCccccccccccccCCeEEEEE-CCEEEEEECCCCcEEEEEe--ccCcceeeeeEEEEecCCEEEEEEecCCceeEE
Q 003800 128 KHSKPLLLVPTNLKVDKDSLILVSS-KGCLHAVSSIDGEILWTRD--FAAESVEVQQVIQLDESDQIYVVGYAGSSQFHA 204 (794)
Q Consensus 128 ~~s~~~~~~~~~~~~~~~~~V~V~~-~g~l~ald~~tG~~~W~~~--~~~~~~~~~~~v~s~~~~~vyv~~~~g~~~~~v 204 (794)
.. ..+.+. .++...++..+ +|.+...|..+|+...+.. ..... ...+..+..+..++..+.+| .+
T Consensus 133 ~v-~~~~~~-----p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~l~~~~~d~----~i 200 (402)
T 2aq5_A 133 RV-GIVAWH-----PTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDT--IYSVDWSRDGALICTSCRDK----RV 200 (402)
T ss_dssp CE-EEEEEC-----SSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSC--EEEEEECTTSSCEEEEETTS----EE
T ss_pred eE-EEEEEC-----cCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCc--eEEEEECCCCCEEEEEecCC----cE
Confidence 22 111111 12112344444 8999999999999988873 22221 22232223344555544455 79
Q ss_pred EEEEcCCCceeeeeeeecccCccCceEEEcC-cEEEEEE--CCCCeEEEEEeecce
Q 003800 205 YQINAMNGELLNHETAAFSGGFVGDVALVSS-DTLVTLD--TTRSILVTVSFKNRK 257 (794)
Q Consensus 205 ~ald~~tG~~~w~~~v~~~~~~s~~~~~vg~-~~lv~~d--~~~g~L~v~~l~sg~ 257 (794)
..+|+.+|+.+.+............+.+..+ .++++.. ...+.+.+.|+.+++
T Consensus 201 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~ 256 (402)
T 2aq5_A 201 RVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLE 256 (402)
T ss_dssp EEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCS
T ss_pred EEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCcccc
Confidence 9999999998876521111111112333333 3444441 346788999988765
No 105
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=97.11 E-value=0.3 Score=49.58 Aligned_cols=183 Identities=12% Similarity=0.082 Sum_probs=100.9
Q ss_pred CCEEEEEeC-CCEEEEEECcCCccceEEEcCcc-cceeeeeeeeCCEEEEEEc-cCCeEEEEeCCCCcEeEEEeccCccc
Q 003800 53 RKRVVVSTE-ENVIASLDLRHGEIFWRHVLGIN-DVVDGIDIALGKYVITLSS-DGSTLRAWNLPDGQMVWESFLRGSKH 129 (794)
Q Consensus 53 ~~~Vyv~t~-~g~l~ALn~~tG~ivWR~~l~~~-~~i~~l~~~~g~~~V~Vs~-~g~~v~A~d~~tG~llWe~~l~~~~~ 129 (794)
++++|+++. .+.|..+|+. |+.. +..++.. ..+.++. ...++.++++. .++.|+.+|+. |+.. +........
T Consensus 30 ~g~l~v~~~~~~~v~~~~~~-~~~~-~~~~~~~~~~~~~i~-~~~~g~l~v~~~~~~~v~~~d~~-g~~~-~~~~~~~~~ 104 (300)
T 2qc5_A 30 DGKVWFTQHKANKISSLDQS-GRIK-EFEVPTPDAKVMCLI-VSSLGDIWFTENGANKIGKLSKK-GGFT-EYPLPQPDS 104 (300)
T ss_dssp TSCEEEEETTTTEEEEECTT-SCEE-EEECSSTTCCEEEEE-ECTTSCEEEEETTTTEEEEECTT-SCEE-EEECSSTTC
T ss_pred CCCEEEEcCCCCeEEEECCC-CceE-EEECCCCCCcceeEE-ECCCCCEEEEecCCCeEEEECCC-CCeE-EecCCCCCC
Confidence 677999885 6899999998 7654 3444332 1233332 23344455554 35789999988 8764 233221111
Q ss_pred cCCccccccccccccCCeEEEEE--CCEEEEEECCCCcEEEEEeccCcceeeeeEEEEecCCEEEEEEecCCceeEEEEE
Q 003800 130 SKPLLLVPTNLKVDKDSLILVSS--KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQI 207 (794)
Q Consensus 130 s~~~~~~~~~~~~~~~~~V~V~~--~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~s~~~~~vyv~~~~g~~~~~v~al 207 (794)
.+..+ ..+.++.+++.. ++.|+++|.. |+.. .+..+.....+..+. ...++.+|+....++ .+..+
T Consensus 105 --~~~~i----~~~~~g~l~v~~~~~~~i~~~~~~-g~~~-~~~~~~~~~~~~~i~-~d~~g~l~v~~~~~~---~i~~~ 172 (300)
T 2qc5_A 105 --GPYGI----TEGLNGDIWFTQLNGDRIGKLTAD-GTIY-EYDLPNKGSYPAFIT-LGSDNALWFTENQNN---SIGRI 172 (300)
T ss_dssp --CEEEE----EECSTTCEEEEETTTTEEEEECTT-SCEE-EEECSSTTCCEEEEE-ECTTSSEEEEETTTT---EEEEE
T ss_pred --CCccc----eECCCCCEEEEccCCCeEEEECCC-CCEE-EccCCCCCCCceeEE-ECCCCCEEEEecCCC---eEEEE
Confidence 11111 333356788764 7899999988 8776 233332222244443 234567887665433 78889
Q ss_pred EcCCCceeeeeeeecccCccC-ceEEE-cCcEEEEEECCCCeEEEEEeecce
Q 003800 208 NAMNGELLNHETAAFSGGFVG-DVALV-SSDTLVTLDTTRSILVTVSFKNRK 257 (794)
Q Consensus 208 d~~tG~~~w~~~v~~~~~~s~-~~~~v-g~~~lv~~d~~~g~L~v~~l~sg~ 257 (794)
|+ +|+... . ..+..... ..+.+ .++.+.+.+...+.+..++. +|+
T Consensus 173 ~~-~g~~~~-~--~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~ 219 (300)
T 2qc5_A 173 TN-TGKLEE-Y--PLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGE 219 (300)
T ss_dssp CT-TCCEEE-E--ECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCC
T ss_pred CC-CCcEEE-e--eCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCc
Confidence 98 777653 2 22222222 12222 23334445545567777776 555
No 106
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=97.10 E-value=0.35 Score=50.19 Aligned_cols=148 Identities=10% Similarity=0.003 Sum_probs=84.4
Q ss_pred CCEEEEEEccCCeEEEEeCCCCcEeEEEeccCccccCCccccccccccccCCeEEEEE-CCEEEEEECCCCcEEEEEecc
Q 003800 95 GKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSS-KGCLHAVSSIDGEILWTRDFA 173 (794)
Q Consensus 95 g~~~V~Vs~~g~~v~A~d~~tG~llWe~~l~~~~~s~~~~~~~~~~~~~~~~~V~V~~-~g~l~ald~~tG~~~W~~~~~ 173 (794)
.+..++.++.++.|+.||..+|+.+.......... ....+.+ + ++.++..+ ++.+...|..+|+...++...
T Consensus 24 ~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v-~~~~~~~-----~-~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h 96 (304)
T 2ynn_A 24 TEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPV-RAGKFIA-----R-KNWIIVGSDDFRIRVFNYNTGEKVVDFEAH 96 (304)
T ss_dssp SSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCE-EEEEEEG-----G-GTEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred CCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcE-EEEEEeC-----C-CCEEEEECCCCEEEEEECCCCcEEEEEeCC
Confidence 33445545567899999999999998877654332 1111221 2 34444444 899999999999998887654
Q ss_pred CcceeeeeEEEEecCCEEEEEEecCCceeEEEEEEcCCCceeeeeeeecccCccCceEEE--cCcEEEEEECCCCeEEEE
Q 003800 174 AESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAFSGGFVGDVALV--SSDTLVTLDTTRSILVTV 251 (794)
Q Consensus 174 ~~~~~~~~~v~s~~~~~vyv~~~~g~~~~~v~ald~~tG~~~w~~~v~~~~~~s~~~~~v--g~~~lv~~d~~~g~L~v~ 251 (794)
.... ..+.....+..++..+.+| .+...|..+|...-+....-...+. .+.+- +...+++.. ..+.+.+-
T Consensus 97 ~~~v--~~~~~~~~~~~l~sgs~D~----~v~lWd~~~~~~~~~~~~~h~~~v~-~v~~~p~~~~~l~sgs-~D~~v~iw 168 (304)
T 2ynn_A 97 PDYI--RSIAVHPTKPYVLSGSDDL----TVKLWNWENNWALEQTFEGHEHFVM-CVAFNPKDPSTFASGC-LDRTVKVW 168 (304)
T ss_dssp SSCE--EEEEECSSSSEEEEEETTS----CEEEEEGGGTTEEEEEECCCCSCEE-EEEECTTCTTEEEEEE-TTSEEEEE
T ss_pred CCcE--EEEEEcCCCCEEEEECCCC----eEEEEECCCCcchhhhhcccCCcEE-EEEECCCCCCEEEEEe-CCCeEEEE
Confidence 3332 2232222334444444444 6777888888554332111111111 11121 234566555 45888888
Q ss_pred Eeecce
Q 003800 252 SFKNRK 257 (794)
Q Consensus 252 ~l~sg~ 257 (794)
|+.++.
T Consensus 169 d~~~~~ 174 (304)
T 2ynn_A 169 SLGQST 174 (304)
T ss_dssp ETTCSS
T ss_pred ECCCCC
Confidence 887655
No 107
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=97.09 E-value=0.39 Score=51.72 Aligned_cols=112 Identities=13% Similarity=0.140 Sum_probs=71.9
Q ss_pred CCCEEEEEeC------CCEEEEEECcCCccceEEEcCcccceeeeeeeeCCEEEEEEc----------cCCeEEEEeCCC
Q 003800 52 GRKRVVVSTE------ENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSS----------DGSTLRAWNLPD 115 (794)
Q Consensus 52 ~~~~Vyv~t~------~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~----------~g~~v~A~d~~t 115 (794)
+.+++|++.. ++.|+.+|+++|+++=+...... . ++....++..+|++. .++.|..||+.+
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~--p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t 90 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFN--G-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADK 90 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEE--E-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTT
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCC--C-ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcC
Confidence 4567999874 57999999999998744433221 2 343344556777653 135799999999
Q ss_pred CcEeEEEeccCcccc--CCccccccccccccCCeEEEEE---CCEEEEEECCCCcEEEE
Q 003800 116 GQMVWESFLRGSKHS--KPLLLVPTNLKVDKDSLILVSS---KGCLHAVSSIDGEILWT 169 (794)
Q Consensus 116 G~llWe~~l~~~~~s--~~~~~~~~~~~~~~~~~V~V~~---~g~l~ald~~tG~~~W~ 169 (794)
++++.+..+...... ..+.-+. ...+ ++.+|+.. ++.+..+|..+++++-+
T Consensus 91 ~~~~~~i~~~~~~~~~g~~p~~i~--~spd-g~~l~v~n~~~~~~v~v~d~~~~~~~~~ 146 (361)
T 2oiz_A 91 LTFEKEISLPPKRVQGLNYDGLFR--QTTD-GKFIVLQNASPATSIGIVDVAKGDYVED 146 (361)
T ss_dssp CCEEEEEEECTTBCCBCCCGGGEE--ECTT-SSEEEEEEESSSEEEEEEETTTTEEEEE
T ss_pred CcEEEEEEcCccccccCCCcceEE--ECCC-CCEEEEECCCCCCeEEEEECCCCcEEEE
Confidence 999998886532110 0111111 0222 45677763 57899999999988755
No 108
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=97.05 E-value=0.42 Score=50.17 Aligned_cols=196 Identities=10% Similarity=0.121 Sum_probs=97.6
Q ss_pred CCEEEEEeC---CCEEEEEECcCCccceEEEcC-cccceeeeeeeeCCEEEEEEc-cCCeEEEEeC-CCCcEeEEEeccC
Q 003800 53 RKRVVVSTE---ENVIASLDLRHGEIFWRHVLG-INDVVDGIDIALGKYVITLSS-DGSTLRAWNL-PDGQMVWESFLRG 126 (794)
Q Consensus 53 ~~~Vyv~t~---~g~l~ALn~~tG~ivWR~~l~-~~~~i~~l~~~~g~~~V~Vs~-~g~~v~A~d~-~tG~llWe~~l~~ 126 (794)
++++|+++. ++.|..+|..+|+..-...+. .......+....++..+++++ .++.++.||. .+|.+..-.....
T Consensus 50 dg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~ 129 (347)
T 3hfq_A 50 KDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQH 129 (347)
T ss_dssp TCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEEC
T ss_pred CCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeec
Confidence 455888886 488999999888742222211 111222332233444555554 5678999998 4666544333321
Q ss_pred cccc-------CCccccccccccccCCeEEEEE--CCEEEEEECC-CCcEEEEE--eccCcceeeeeEEEEecCCEEEEE
Q 003800 127 SKHS-------KPLLLVPTNLKVDKDSLILVSS--KGCLHAVSSI-DGEILWTR--DFAAESVEVQQVIQLDESDQIYVV 194 (794)
Q Consensus 127 ~~~s-------~~~~~~~~~~~~~~~~~V~V~~--~g~l~ald~~-tG~~~W~~--~~~~~~~~~~~~v~s~~~~~vyv~ 194 (794)
.... ..+..+ ....++.+++.. ++.+..++.. +|+..-.. ..+... .+..+..+.++..+|+.
T Consensus 130 ~~~~p~~~~~~~~~~~~----~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~-~p~~~~~spdg~~l~v~ 204 (347)
T 3hfq_A 130 SGHGPRPEQDGSHIHYT----DLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGF-GPRHLVFSPDGQYAFLA 204 (347)
T ss_dssp CCCCSSTTCSSCCEEEE----EECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTC-CEEEEEECTTSSEEEEE
T ss_pred CCCCCCccccCCCceEE----EECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCC-CCceEEECCCCCEEEEE
Confidence 1100 000001 122234466653 6788888877 67654322 222211 23344333334457765
Q ss_pred EecCCceeEEEEEEcCCCceeeeeeeec-ccCccC-----ceEEE-cCcEEEEEECCCCeEEEEEee
Q 003800 195 GYAGSSQFHAYQINAMNGELLNHETAAF-SGGFVG-----DVALV-SSDTLVTLDTTRSILVTVSFK 254 (794)
Q Consensus 195 ~~~g~~~~~v~ald~~tG~~~w~~~v~~-~~~~s~-----~~~~v-g~~~lv~~d~~~g~L~v~~l~ 254 (794)
+. ++..+.++.++..+|+......+.. +.+..+ .+.+- .+..+++.+...+.+.+.++.
T Consensus 205 ~~-~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~ 270 (347)
T 3hfq_A 205 GE-LSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVT 270 (347)
T ss_dssp ET-TTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEEC
T ss_pred eC-CCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEEC
Confidence 43 3345667777777787643333322 221111 12222 233454555456778888876
No 109
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=97.03 E-value=0.099 Score=53.24 Aligned_cols=182 Identities=7% Similarity=0.048 Sum_probs=96.6
Q ss_pred CCEEEEEeC-CCEEEEEECcCCccceEEEcCcc-cceeeeeeeeCCEEEEEEc-cCCeEEEEeCCCCcEeEEEeccCccc
Q 003800 53 RKRVVVSTE-ENVIASLDLRHGEIFWRHVLGIN-DVVDGIDIALGKYVITLSS-DGSTLRAWNLPDGQMVWESFLRGSKH 129 (794)
Q Consensus 53 ~~~Vyv~t~-~g~l~ALn~~tG~ivWR~~l~~~-~~i~~l~~~~g~~~V~Vs~-~g~~v~A~d~~tG~llWe~~l~~~~~ 129 (794)
++++|+++. .+.|..+|+ +|+.. +..+... ....++. ...++.++++. .++.++.||. +|+.... ..... .
T Consensus 109 ~g~l~v~~~~~~~i~~~d~-~g~~~-~~~~~~~~~~~~~i~-~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~-~~~~~-~ 182 (299)
T 2z2n_A 109 NGDIWFTEMNGNRIGRITD-DGKIR-EYELPNKGSYPSFIT-LGSDNALWFTENQNNAIGRITE-SGDITEF-KIPTP-A 182 (299)
T ss_dssp TSCEEEEETTTTEEEEECT-TCCEE-EEECSSTTCCEEEEE-ECTTSCEEEEETTTTEEEEECT-TCCEEEE-ECSST-T
T ss_pred CCCEEEEecCCceEEEECC-CCCEE-EecCCCCCCCCceEE-EcCCCCEEEEeCCCCEEEEEcC-CCcEEEe-eCCCC-C
Confidence 577888874 689999999 88765 2233222 1223332 23334455544 3578999999 8987642 22211 1
Q ss_pred cCCccccccccccccCCeEEEEE--CCEEEEEECCCCcEEEEEeccCcceeeeeEEEEecCCEEEEEEecCCceeEEEEE
Q 003800 130 SKPLLLVPTNLKVDKDSLILVSS--KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQI 207 (794)
Q Consensus 130 s~~~~~~~~~~~~~~~~~V~V~~--~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~s~~~~~vyv~~~~g~~~~~v~al 207 (794)
..+.. +..+.++.+++.. ++.|..+|. +|+..- +..+.....+..+. ...++.+|+.....+ .+..+
T Consensus 183 -~~~~~----i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~~~~~~~~~~i~-~~~~g~l~v~~~~~~---~i~~~ 251 (299)
T 2z2n_A 183 -SGPVG----ITKGNDDALWFVEIIGNKIGRITT-SGEITE-FKIPTPNARPHAIT-AGAGIDLWFTEWGAN---KIGRL 251 (299)
T ss_dssp -CCEEE----EEECTTSSEEEEETTTTEEEEECT-TCCEEE-EECSSTTCCEEEEE-ECSTTCEEEEETTTT---EEEEE
T ss_pred -Cccee----EEECCCCCEEEEccCCceEEEECC-CCcEEE-EECCCCCCCceeEE-ECCCCCEEEeccCCc---eEEEE
Confidence 11111 1334356788875 789999999 887542 33332222244443 234678898664433 78999
Q ss_pred EcCCCceeeeeeeecccCccC--ceEEEcCcEEEEEECCCCeEEEEEeecce
Q 003800 208 NAMNGELLNHETAAFSGGFVG--DVALVSSDTLVTLDTTRSILVTVSFKNRK 257 (794)
Q Consensus 208 d~~tG~~~w~~~v~~~~~~s~--~~~~vg~~~lv~~d~~~g~L~v~~l~sg~ 257 (794)
|+ +|+.. ... .+..... .+.+ .++.+...+. .+.+..++..+++
T Consensus 252 d~-~g~~~-~~~--~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~~~ 297 (299)
T 2z2n_A 252 TS-NNIIE-EYP--IQIKSAEPHGICF-DGETIWFAME-CDKIGKLTLIKDN 297 (299)
T ss_dssp ET-TTEEE-EEE--CSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC---
T ss_pred CC-CCceE-EEe--CCCCCCccceEEe-cCCCEEEEec-CCcEEEEEcCccc
Confidence 98 67532 222 2222211 2222 3333333332 4667777766554
No 110
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=97.02 E-value=0.05 Score=58.34 Aligned_cols=155 Identities=10% Similarity=0.011 Sum_probs=91.6
Q ss_pred CCCEEEEEeCCCEEEEEECcCCccceEEEcCcccceeeeeee--eCCEEEEEEccCCeEEEEeCCCCcEeEEEeccCccc
Q 003800 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIA--LGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKH 129 (794)
Q Consensus 52 ~~~~Vyv~t~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~--~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~l~~~~~ 129 (794)
++..+++++.++.|.-.|.++|+.+-...-.. ..+..+... ..+..++.++.++.|+.||..+|+.+-.........
T Consensus 165 ~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~-~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v 243 (354)
T 2pbi_B 165 SDMQILTASGDGTCALWDVESGQLLQSFHGHG-ADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDV 243 (354)
T ss_dssp SSSEEEEEETTSEEEEEETTTCCEEEEEECCS-SCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCE
T ss_pred CCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCC-CCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCe
Confidence 35679999999999999999998765443222 223322211 123455546667899999999999887766544322
Q ss_pred cCCccccccccccccCCeEEEEE-CCEEEEEECCCCcEEEEEeccCcceeeeeEEEEecCCEEEEEEecCCceeEEEEEE
Q 003800 130 SKPLLLVPTNLKVDKDSLILVSS-KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQIN 208 (794)
Q Consensus 130 s~~~~~~~~~~~~~~~~~V~V~~-~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~s~~~~~vyv~~~~g~~~~~v~ald 208 (794)
..+.+.+ + ++.++..+ |+.+...|..+++..-.+...........+..+..+..++..+.+| .+..+|
T Consensus 244 -~~v~~~p-----~-~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~----~i~vwd 312 (354)
T 2pbi_B 244 -NSVRYYP-----S-GDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDY----TINVWD 312 (354)
T ss_dssp -EEEEECT-----T-SSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTS----CEEEEE
T ss_pred -EEEEEeC-----C-CCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCC----cEEEEE
Confidence 1111111 1 23344444 8999999999887765554332211122222222334444433344 688889
Q ss_pred cCCCceeeee
Q 003800 209 AMNGELLNHE 218 (794)
Q Consensus 209 ~~tG~~~w~~ 218 (794)
..+|+.+...
T Consensus 313 ~~~~~~~~~l 322 (354)
T 2pbi_B 313 VLKGSRVSIL 322 (354)
T ss_dssp TTTCSEEEEE
T ss_pred CCCCceEEEE
Confidence 9999876443
No 111
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=97.02 E-value=0.044 Score=57.40 Aligned_cols=187 Identities=12% Similarity=0.028 Sum_probs=108.1
Q ss_pred CCCEEEEEeCCCEEEEEECcCCccceEEEcCcccceeeeee--eeCCEEEEEEccCCeEEEEeCCCCcEeEEEeccCccc
Q 003800 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDI--ALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKH 129 (794)
Q Consensus 52 ~~~~Vyv~t~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~--~~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~l~~~~~ 129 (794)
+++.+++++.+|.|...|.++|+.+....... .+..+.. ...+..++.++.++.++.||..+|+.+..........
T Consensus 97 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 174 (368)
T 3mmy_A 97 DGSKVFTASCDKTAKMWDLSSNQAIQIAQHDA--PVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCY 174 (368)
T ss_dssp TSSEEEEEETTSEEEEEETTTTEEEEEEECSS--CEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEE
T ss_pred CCCEEEEEcCCCcEEEEEcCCCCceeeccccC--ceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCce
Confidence 46679999999999999999999776544333 3444422 2344455556667899999999999999988765332
Q ss_pred cCCccccccccccccCCeEEEE-ECCEEEEEECCCCcEEEEEeccCcceeeeeEEE-EecC----CEEEEEEecCCceeE
Q 003800 130 SKPLLLVPTNLKVDKDSLILVS-SKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQ-LDES----DQIYVVGYAGSSQFH 203 (794)
Q Consensus 130 s~~~~~~~~~~~~~~~~~V~V~-~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~-s~~~----~~vyv~~~~g~~~~~ 203 (794)
.. ... ...+++. .++.+..++..++...+......... ...++. .... +.++..+.+| .
T Consensus 175 -----~~----~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~dg----~ 239 (368)
T 3mmy_A 175 -----CA----DVI-YPMAVVATAERGLIVYQLENQPSEFRRIESPLKH-QHRCVAIFKDKQNKPTGFALGSIEG----R 239 (368)
T ss_dssp -----EE----EEE-TTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSS-CEEEEEEEECTTSCEEEEEEEETTS----E
T ss_pred -----EE----Eec-CCeeEEEeCCCcEEEEEeccccchhhhccccccC-CCceEEEcccCCCCCCeEEEecCCC----c
Confidence 11 111 3344444 48888889988877766654322111 111111 1111 1144444444 6
Q ss_pred EEEEEcCCCce---eeeeeeeccc-----------CccCceEEE-cCcEEEEEECCCCeEEEEEeecce
Q 003800 204 AYQINAMNGEL---LNHETAAFSG-----------GFVGDVALV-SSDTLVTLDTTRSILVTVSFKNRK 257 (794)
Q Consensus 204 v~ald~~tG~~---~w~~~v~~~~-----------~~s~~~~~v-g~~~lv~~d~~~g~L~v~~l~sg~ 257 (794)
+..+|..++.. +......... .+.. +.+- .+.++++.. ..|.+++-|+.+++
T Consensus 240 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~sp~~~~l~s~~-~dg~i~iwd~~~~~ 306 (368)
T 3mmy_A 240 VAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNG-IAFHPVHGTLATVG-SDGRFSFWDKDART 306 (368)
T ss_dssp EEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEE-EEECTTTCCEEEEE-TTSCEEEEETTTTE
T ss_pred EEEEecCCCCccccceeeeeeecccccccccccccceEE-EEEecCCCEEEEEc-cCCeEEEEECCCCc
Confidence 77778877743 3322211110 1111 1111 334566665 45889999998876
No 112
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=97.01 E-value=0.55 Score=50.96 Aligned_cols=199 Identities=12% Similarity=0.036 Sum_probs=107.2
Q ss_pred CCCEEEEEeCCCEEEEEECcC---Cccc-eEEEcCcccceeeeeeeeCCEEEEEEccCCeEEEEeCC---CCcEeEEEec
Q 003800 52 GRKRVVVSTEENVIASLDLRH---GEIF-WRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLP---DGQMVWESFL 124 (794)
Q Consensus 52 ~~~~Vyv~t~~g~l~ALn~~t---G~iv-WR~~l~~~~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~---tG~llWe~~l 124 (794)
++..+++++.+|.|.-.|..+ |... =+..+.....+..+.....+..++.++.++.++.||.. +|+..-....
T Consensus 75 ~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~ 154 (437)
T 3gre_A 75 ETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNC 154 (437)
T ss_dssp SSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEE
T ss_pred CCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeecccc
Confidence 356788999999999999888 6511 01222222334444333344455556667899999994 6765543332
Q ss_pred c--------CccccCCccccccccccccCCeEEE-EE-CCEEEEEECCCCcEEEEEeccCcceeeeeEEEEecCCEEEEE
Q 003800 125 R--------GSKHSKPLLLVPTNLKVDKDSLILV-SS-KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVV 194 (794)
Q Consensus 125 ~--------~~~~s~~~~~~~~~~~~~~~~~V~V-~~-~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~s~~~~~vyv~ 194 (794)
. .... ...+.........++..++ .+ +|.+...|..+|+..++...+........+..+..+..++..
T Consensus 155 ~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~ 232 (437)
T 3gre_A 155 ECIRKINLKNFGK--NEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILG 232 (437)
T ss_dssp EEEEEEEGGGGSS--CCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEE
T ss_pred ceeEEEEccCccc--ccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEE
Confidence 1 1000 0000000000111344444 33 899999999999999998763111112223222234444444
Q ss_pred EecCCceeEEEEEEcCCCceeeeeeeecccCccCceE---EEcCc-EEEEEECCCCeEEEEEeecce
Q 003800 195 GYAGSSQFHAYQINAMNGELLNHETAAFSGGFVGDVA---LVSSD-TLVTLDTTRSILVTVSFKNRK 257 (794)
Q Consensus 195 ~~~g~~~~~v~ald~~tG~~~w~~~v~~~~~~s~~~~---~vg~~-~lv~~d~~~g~L~v~~l~sg~ 257 (794)
+.+| .+..+|..+|+.+..........+..-+. +-.++ .+++. ...+.+.+-|+.+++
T Consensus 233 ~~dg----~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~-~~dg~i~iwd~~~~~ 294 (437)
T 3gre_A 233 TTRG----IIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGG-SSKTFLTIWNFVKGH 294 (437)
T ss_dssp ETTS----CEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEE-STTEEEEEEETTTTE
T ss_pred cCCC----eEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEE-cCCCcEEEEEcCCCc
Confidence 4444 68889999998876654322211111000 00122 44444 356889999998887
No 113
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=96.98 E-value=0.049 Score=59.47 Aligned_cols=157 Identities=14% Similarity=0.093 Sum_probs=98.1
Q ss_pred CCCEEEEEeCCCEEEEEECcCCccceEEEcC-cccceeeeeeeeCCEEEEEEccCCeEEEEeCCCCcEeEEEeccCc-cc
Q 003800 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVLG-INDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGS-KH 129 (794)
Q Consensus 52 ~~~~Vyv~t~~g~l~ALn~~tG~ivWR~~l~-~~~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~l~~~-~~ 129 (794)
++..+++++.+|.|...|.++|+.+++.... ....+..+.....+..++.++.++.|+.||..+|+.+-+...... ..
T Consensus 181 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v 260 (437)
T 3gre_A 181 EKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPI 260 (437)
T ss_dssp SCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEE
T ss_pred CCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCce
Confidence 3566888999999999999999999998763 223344443333455566566678999999999999887764322 11
Q ss_pred cCCccccccccccccCCeEEEE--ECCEEEEEECCCCcEEEEEeccCcce-----e-------------------eeeEE
Q 003800 130 SKPLLLVPTNLKVDKDSLILVS--SKGCLHAVSSIDGEILWTRDFAAESV-----E-------------------VQQVI 183 (794)
Q Consensus 130 s~~~~~~~~~~~~~~~~~V~V~--~~g~l~ald~~tG~~~W~~~~~~~~~-----~-------------------~~~~v 183 (794)
..+...+ ....++..++. .+|.+...|..+|+....+....... . ...+.
T Consensus 261 -~~~~~~~---~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~ 336 (437)
T 3gre_A 261 -THVEVCQ---FYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTIS 336 (437)
T ss_dssp -EEEEECT---TTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEE
T ss_pred -EEEEecc---ccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEE
Confidence 1111111 11113434443 38899999999999887776332110 0 11121
Q ss_pred EEecCCEEEEEEe-cCCceeEEEEEEcCCCceeeee
Q 003800 184 QLDESDQIYVVGY-AGSSQFHAYQINAMNGELLNHE 218 (794)
Q Consensus 184 ~s~~~~~vyv~~~-~g~~~~~v~ald~~tG~~~w~~ 218 (794)
..++..++.+. +| .+...|..+|+.....
T Consensus 337 --~~~~~~l~s~~~d~----~i~~wd~~~~~~~~~~ 366 (437)
T 3gre_A 337 --VSNDKILLTDEATS----SIVMFSLNELSSSKAV 366 (437)
T ss_dssp --EETTEEEEEEGGGT----EEEEEETTCGGGCEEE
T ss_pred --ECCceEEEecCCCC----eEEEEECCCcccceEE
Confidence 22455444443 34 7889999999877554
No 114
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=96.97 E-value=0.19 Score=52.86 Aligned_cols=192 Identities=15% Similarity=0.105 Sum_probs=100.6
Q ss_pred CCCEEEEEeCCCEEEEEECcCCccceEEEcCc-ccceeeeeeeeC--CEEEEEEccCCeEEEEeCCCCc--EeEEEeccC
Q 003800 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVLGI-NDVVDGIDIALG--KYVITLSSDGSTLRAWNLPDGQ--MVWESFLRG 126 (794)
Q Consensus 52 ~~~~Vyv~t~~g~l~ALn~~tG~ivWR~~l~~-~~~i~~l~~~~g--~~~V~Vs~~g~~v~A~d~~tG~--llWe~~l~~ 126 (794)
+++.+++++.+|.|.-.|..++...-.+.+.. ...+..+..... +..++.++.++.|+.||..+|+ .+.......
T Consensus 22 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~ 101 (379)
T 3jrp_A 22 YGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHS 101 (379)
T ss_dssp SSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCS
T ss_pred CCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCC
Confidence 45678888899988888887433322233332 223444422211 3455545556799999999997 555554333
Q ss_pred ccccCCcccccccccccc-CCeEEEE-ECCEEEEEECCCCcE--EEEEeccCcceeeeeEEEEe-------------cCC
Q 003800 127 SKHSKPLLLVPTNLKVDK-DSLILVS-SKGCLHAVSSIDGEI--LWTRDFAAESVEVQQVIQLD-------------ESD 189 (794)
Q Consensus 127 ~~~s~~~~~~~~~~~~~~-~~~V~V~-~~g~l~ald~~tG~~--~W~~~~~~~~~~~~~~v~s~-------------~~~ 189 (794)
... ..+.+.+ +. +..+++. .+|.+...|..++.. .......... ...+.... .+.
T Consensus 102 ~~v-~~~~~~~-----~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~~~~~~~~~~~~ 173 (379)
T 3jrp_A 102 ASV-NSVQWAP-----HEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIG--VNSASWAPATIEEDGEHNGTKESR 173 (379)
T ss_dssp SCE-EEEEECC-----GGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTC--EEEEEECCCC----------CTTC
T ss_pred cce-EEEEeCC-----CCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCc--eEEEEEcCccccccccccCCCCCC
Confidence 222 1111111 11 2334444 389999999888732 2222222111 11221111 233
Q ss_pred EEEEEEecCCceeEEEEEEcCCCceeeeeeeecc---cCccCceEEE-c---CcEEEEEECCCCeEEEEEeecce
Q 003800 190 QIYVVGYAGSSQFHAYQINAMNGELLNHETAAFS---GGFVGDVALV-S---SDTLVTLDTTRSILVTVSFKNRK 257 (794)
Q Consensus 190 ~vyv~~~~g~~~~~v~ald~~tG~~~w~~~v~~~---~~~s~~~~~v-g---~~~lv~~d~~~g~L~v~~l~sg~ 257 (794)
.++..+.+| .+..+|..+++..+....... ..+. .+.+- . ++++++.+ ..|.+.+.++.++.
T Consensus 174 ~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~~~h~~~v~-~~~~sp~~~~~~~l~s~~-~dg~i~iwd~~~~~ 242 (379)
T 3jrp_A 174 KFVTGGADN----LVKIWKYNSDAQTYVLESTLEGHSDWVR-DVAWSPTVLLRSYLASVS-QDRTCIIWTQDNEQ 242 (379)
T ss_dssp EEEEEETTS----CEEEEEEETTTTEEEEEEEECCCSSCEE-EEEECCCCSSSEEEEEEE-TTSCEEEEEESSTT
T ss_pred EEEEEeCCC----eEEEEEecCCCcceeeEEEEecccCcEe-EEEECCCCCCCCeEEEEe-CCCEEEEEeCCCCC
Confidence 444444444 677788888876655432222 1111 12221 2 45666665 46889999998864
No 115
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=96.96 E-value=0.069 Score=55.48 Aligned_cols=189 Identities=9% Similarity=0.041 Sum_probs=107.3
Q ss_pred CCCEEEEEeCCCEEEEEECcCCccceEEEcCcccceeeeeee-eCCE-EEEEEccCCeEEEEeCCCCcEeEEEeccCccc
Q 003800 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIA-LGKY-VITLSSDGSTLRAWNLPDGQMVWESFLRGSKH 129 (794)
Q Consensus 52 ~~~~Vyv~t~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~-~g~~-~V~Vs~~g~~v~A~d~~tG~llWe~~l~~~~~ 129 (794)
..+.++.++.++.+...|...+...-.........+..+... .+.. .++.++.++.++.||..+|+++..........
T Consensus 139 ~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v 218 (340)
T 4aow_A 139 DNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYL 218 (340)
T ss_dssp TSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCE
T ss_pred cCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcE
Confidence 355688888889888888776544322222112222222111 2223 33334556799999999999988776544322
Q ss_pred cCCccccccccccccCCeEEE-EE-CCEEEEEECCCCcEEEEEeccCcceeeeeEEEEecCCEEEEEEecCCceeEEEEE
Q 003800 130 SKPLLLVPTNLKVDKDSLILV-SS-KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQI 207 (794)
Q Consensus 130 s~~~~~~~~~~~~~~~~~V~V-~~-~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~s~~~~~vyv~~~~g~~~~~v~al 207 (794)
..+.+ ..++..++ .+ +|.+...|..+++.+......... ..+. ...++.+.+.+.++ .+..+
T Consensus 219 -~~~~~-------s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v---~~~~-~~~~~~~~~~~~d~----~i~iw 282 (340)
T 4aow_A 219 -NTVTV-------SPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDII---NALC-FSPNRYWLCAATGP----SIKIW 282 (340)
T ss_dssp -EEEEE-------CTTSSEEEEEETTCEEEEEETTTTEEEEEEECSSCE---EEEE-ECSSSSEEEEEETT----EEEEE
T ss_pred -EEEEE-------CCCCCEEEEEeCCCeEEEEEeccCceeeeecCCceE---Eeee-cCCCCceeeccCCC----EEEEE
Confidence 11111 11344444 43 899999999999998887665432 1221 12345555555554 68888
Q ss_pred EcCCCceeeeeeeecc----cCccCc---eEEE-cCcEEEEEECCCCeEEEEEeecce
Q 003800 208 NAMNGELLNHETAAFS----GGFVGD---VALV-SSDTLVTLDTTRSILVTVSFKNRK 257 (794)
Q Consensus 208 d~~tG~~~w~~~v~~~----~~~s~~---~~~v-g~~~lv~~d~~~g~L~v~~l~sg~ 257 (794)
|..++..+++..-... ..-... +.+- .+.++++.. .+|.+++-++.+|+
T Consensus 283 d~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs-~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 283 DLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGY-TDNLVRVWQVTIGT 339 (340)
T ss_dssp ETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEE-TTSCEEEEEEEC--
T ss_pred ECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEe-CCCEEEEEeCCCcC
Confidence 9999988876642211 011111 1111 345666665 45889998998885
No 116
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=96.96 E-value=0.12 Score=55.09 Aligned_cols=190 Identities=12% Similarity=0.046 Sum_probs=108.2
Q ss_pred CCEEEEEeCCCEEEEEECcCCccceEEEcCcccceeeeeee---eCCEEEEEEccCCeEEEEeCCCCcEeEEEeccCccc
Q 003800 53 RKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIA---LGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKH 129 (794)
Q Consensus 53 ~~~Vyv~t~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~---~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~l~~~~~ 129 (794)
...+++++.+|.|...|.++|+.......... +..+... ..+..++.++.++.++.||..+|+.+..........
T Consensus 112 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v 189 (408)
T 4a11_B 112 TGMFTSSSFDKTLKVWDTNTLQTADVFNFEET--VYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEI 189 (408)
T ss_dssp TTCEEEEETTSEEEEEETTTTEEEEEEECSSC--EEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCE
T ss_pred CcEEEEEeCCCeEEEeeCCCCccceeccCCCc--eeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcE
Confidence 44688889999999999999999988876554 2222111 123356656667899999999999998877544322
Q ss_pred cCCccccccccccccCCeEE-EEE-CCEEEEEECCCCc-EEEEEeccC-------------cceeeeeEEEEecCCEEEE
Q 003800 130 SKPLLLVPTNLKVDKDSLIL-VSS-KGCLHAVSSIDGE-ILWTRDFAA-------------ESVEVQQVIQLDESDQIYV 193 (794)
Q Consensus 130 s~~~~~~~~~~~~~~~~~V~-V~~-~g~l~ald~~tG~-~~W~~~~~~-------------~~~~~~~~v~s~~~~~vyv 193 (794)
..+.+. .+ +..++ ..+ +|.+...|..++. ......... .......+..+..+..++.
T Consensus 190 -~~~~~~-----~~-~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 262 (408)
T 4a11_B 190 -LAVSWS-----PR-YDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLT 262 (408)
T ss_dssp -EEEEEC-----SS-CTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEE
T ss_pred -EEEEEC-----CC-CCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEE
Confidence 111111 12 23234 443 8899999988776 333321110 0011222222223344555
Q ss_pred EEecCCceeEEEEEEcCCCceeeeeeeeccc-CccC-ceEEE---cCcEEEEEECCCCeEEEEEeecce
Q 003800 194 VGYAGSSQFHAYQINAMNGELLNHETAAFSG-GFVG-DVALV---SSDTLVTLDTTRSILVTVSFKNRK 257 (794)
Q Consensus 194 ~~~~g~~~~~v~ald~~tG~~~w~~~v~~~~-~~s~-~~~~v---g~~~lv~~d~~~g~L~v~~l~sg~ 257 (794)
.+.+| .+..+|..+|+........... .... ..... +..++++.+ .+.+.+.++.+++
T Consensus 263 ~~~dg----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~ 325 (408)
T 4a11_B 263 VGTDN----RMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPY--GSTIAVYTVYSGE 325 (408)
T ss_dssp EETTS----CEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEE--TTEEEEEETTTCC
T ss_pred ecCCC----eEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEec--CCEEEEEECcCCc
Confidence 44455 6888999999876544221111 1111 11111 122333333 5789999998877
No 117
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=96.95 E-value=0.15 Score=53.63 Aligned_cols=190 Identities=11% Similarity=0.053 Sum_probs=108.1
Q ss_pred CCCEEEEEeCCCEEEEEECcCCccceEEEcCcc-cceeeeeeeeCCEEEEEEccCCeEEEEeCCCCcEeEEEeccCcccc
Q 003800 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVLGIN-DVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHS 130 (794)
Q Consensus 52 ~~~~Vyv~t~~g~l~ALn~~tG~ivWR~~l~~~-~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~l~~~~~s 130 (794)
+++.+++++.+|.|...|.++|+..-...+... ..+..+.....+..+++++.++.++.||..++...|..........
T Consensus 63 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~ 142 (372)
T 1k8k_C 63 DSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIR 142 (372)
T ss_dssp TTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCC
T ss_pred CCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccC
Confidence 466788999999999999999986666554322 2343332233444555566667999999999886554433211110
Q ss_pred CCccccccccccccCC-eEEEEE-CCEEEEEEC------------------CCCcEEEEEeccCcceeeeeEEEEecCCE
Q 003800 131 KPLLLVPTNLKVDKDS-LILVSS-KGCLHAVSS------------------IDGEILWTRDFAAESVEVQQVIQLDESDQ 190 (794)
Q Consensus 131 ~~~~~~~~~~~~~~~~-~V~V~~-~g~l~ald~------------------~tG~~~W~~~~~~~~~~~~~~v~s~~~~~ 190 (794)
.....+ ....++ .+++.+ +|.+...|. .+|+..-.+...... ...+..+..+..
T Consensus 143 ~~i~~~----~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~ 216 (372)
T 1k8k_C 143 STVLSL----DWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGW--VHGVCFSANGSR 216 (372)
T ss_dssp SCEEEE----EECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSC--EEEEEECSSSSE
T ss_pred CCeeEE----EEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCe--EEEEEECCCCCE
Confidence 111111 112133 344443 888888883 467776665432222 222322233445
Q ss_pred EEEEEecCCceeEEEEEEcCCCceeeeeeeecccCccCceEEE-cCcEEEEEECCCCeEEEEEeec
Q 003800 191 IYVVGYAGSSQFHAYQINAMNGELLNHETAAFSGGFVGDVALV-SSDTLVTLDTTRSILVTVSFKN 255 (794)
Q Consensus 191 vyv~~~~g~~~~~v~ald~~tG~~~w~~~v~~~~~~s~~~~~v-g~~~lv~~d~~~g~L~v~~l~s 255 (794)
++..+.+| .+..+|..+|+.+...... ...+.. +.+. .+.++++. ..+.+++.++.+
T Consensus 217 l~~~~~d~----~i~i~d~~~~~~~~~~~~~-~~~v~~-~~~~~~~~~l~~~--~d~~i~i~~~~~ 274 (372)
T 1k8k_C 217 VAWVSHDS----TVCLADADKKMAVATLASE-TLPLLA-VTFITESSLVAAG--HDCFPVLFTYDS 274 (372)
T ss_dssp EEEEETTT----EEEEEEGGGTTEEEEEECS-SCCEEE-EEEEETTEEEEEE--TTSSCEEEEEET
T ss_pred EEEEeCCC----EEEEEECCCCceeEEEccC-CCCeEE-EEEecCCCEEEEE--eCCeEEEEEccC
Confidence 55555454 7889999999988766421 112221 2222 33445444 467888888877
No 118
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=96.93 E-value=0.057 Score=56.58 Aligned_cols=106 Identities=10% Similarity=0.054 Sum_probs=68.0
Q ss_pred CEEEEEeCCCEEEEEECcCCccceEEEcCcccceeeeeeee-CCEEEEEEccCCeEEEEeCCCCcEeEEEec---cCccc
Q 003800 54 KRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIAL-GKYVITLSSDGSTLRAWNLPDGQMVWESFL---RGSKH 129 (794)
Q Consensus 54 ~~Vyv~t~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~-g~~~V~Vs~~g~~v~A~d~~tG~llWe~~l---~~~~~ 129 (794)
..+++++.+|.|...|.++|+.+....-. ...+..+.... ++..++.++.++.|+.||..+|+.+..... .....
T Consensus 86 ~~l~~~~~dg~i~v~d~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v 164 (366)
T 3k26_A 86 PLLAVAGSRGIIRIINPITMQCIKHYVGH-GNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEV 164 (366)
T ss_dssp EEEEEEETTCEEEEECTTTCCEEEEEESC-CSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCE
T ss_pred CEEEEecCCCEEEEEEchhceEeeeecCC-CCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCce
Confidence 46888999999999999999998876532 22344443222 444555566667999999999999888732 22111
Q ss_pred cCCccccccccccccCCeEEEEE-CCEEEEEECCCCcEE
Q 003800 130 SKPLLLVPTNLKVDKDSLILVSS-KGCLHAVSSIDGEIL 167 (794)
Q Consensus 130 s~~~~~~~~~~~~~~~~~V~V~~-~g~l~ald~~tG~~~ 167 (794)
..+.+. .+ ++.++..+ +|.+...|..+|+..
T Consensus 165 -~~~~~~-----~~-~~~l~~~~~dg~i~i~d~~~~~~~ 196 (366)
T 3k26_A 165 -LSADYD-----LL-GEKIMSCGMDHSLKLWRINSKRMM 196 (366)
T ss_dssp -EEEEEC-----TT-SSEEEEEETTSCEEEEESCSHHHH
T ss_pred -eEEEEC-----CC-CCEEEEecCCCCEEEEECCCCccc
Confidence 111111 11 23444443 889999998887643
No 119
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=96.92 E-value=0.18 Score=54.32 Aligned_cols=72 Identities=13% Similarity=0.084 Sum_probs=50.8
Q ss_pred ccCCCEEEEEeC----------CCEEEEEECcCCccceEEEcCccc-----ceeeeeeeeCCEEEEEEcc--CCeEEEEe
Q 003800 50 KTGRKRVVVSTE----------ENVIASLDLRHGEIFWRHVLGIND-----VVDGIDIALGKYVITLSSD--GSTLRAWN 112 (794)
Q Consensus 50 ~~~~~~Vyv~t~----------~g~l~ALn~~tG~ivWR~~l~~~~-----~i~~l~~~~g~~~V~Vs~~--g~~v~A~d 112 (794)
+.+++.+|++++ ++.|..+|+++++++-+..+.... ...++.+..++..++++.. ++.|..||
T Consensus 58 spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d 137 (361)
T 2oiz_A 58 SNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVD 137 (361)
T ss_dssp CTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEE
T ss_pred CCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEE
Confidence 345778999973 567999999999999888764211 1123323335567777642 46899999
Q ss_pred CCCCcEeEE
Q 003800 113 LPDGQMVWE 121 (794)
Q Consensus 113 ~~tG~llWe 121 (794)
..+|+++-+
T Consensus 138 ~~~~~~~~~ 146 (361)
T 2oiz_A 138 VAKGDYVED 146 (361)
T ss_dssp TTTTEEEEE
T ss_pred CCCCcEEEE
Confidence 999998766
No 120
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=96.90 E-value=0.028 Score=60.50 Aligned_cols=194 Identities=12% Similarity=0.088 Sum_probs=95.7
Q ss_pred CCCEEEEEeC------CCEEEEEECcCCccceEEEcC---cccceeeeeeeeCCEEEEEEccCCeEEEEeCCCCcEeEEE
Q 003800 52 GRKRVVVSTE------ENVIASLDLRHGEIFWRHVLG---INDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWES 122 (794)
Q Consensus 52 ~~~~Vyv~t~------~g~l~ALn~~tG~ivWR~~l~---~~~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~tG~llWe~ 122 (794)
++..+..++. ++.+.-.+..+|+........ ....+..+.....+.+++ ++.++.|+.||..+|+.....
T Consensus 53 DG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l~-~s~dg~v~lWd~~~~~~~~~~ 131 (357)
T 4g56_B 53 DGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGILV-ASDSGAVELWEILEKESLLVN 131 (357)
T ss_dssp SSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEEE-EETTSCEEEC--------CCC
T ss_pred CCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEEE-EECCCEEEEeeccccceeEEE
Confidence 4555666666 567888888787655443221 111233332223444444 555578999999999765433
Q ss_pred eccCccccCCccccccccccccCC-eEEEEE-CCEEEEEECCCCcEEEEEeccCcceeeeeEEEEecCCEEEEEE-ecCC
Q 003800 123 FLRGSKHSKPLLLVPTNLKVDKDS-LILVSS-KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVG-YAGS 199 (794)
Q Consensus 123 ~l~~~~~s~~~~~~~~~~~~~~~~-~V~V~~-~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~s~~~~~vyv~~-~~g~ 199 (794)
.............+ ....++ .++..+ ++.+...|..+|+.+..++...... ..+..+..++.+++.+ .+|
T Consensus 132 ~~~~~~h~~~V~~v----~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v--~~v~~s~~~~~~~~s~~~dg- 204 (357)
T 4g56_B 132 KFAKYEHDDIVKTL----SVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEV--NCVAACPGKDTIFLSCGEDG- 204 (357)
T ss_dssp CEEECCCSSCEEEE----EECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCE--EEEEECTTCSSCEEEEETTS-
T ss_pred eeccCCCCCCEEEE----EECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCE--EEEEEccCCCceeeeeccCC-
Confidence 22111000111111 111134 344443 8999999999999998886543332 2222122333344433 344
Q ss_pred ceeEEEEEEcCCCceeeeeeeecccCccCceEEE--cCcEEEEEECCCCeEEEEEeecce
Q 003800 200 SQFHAYQINAMNGELLNHETAAFSGGFVGDVALV--SSDTLVTLDTTRSILVTVSFKNRK 257 (794)
Q Consensus 200 ~~~~v~ald~~tG~~~w~~~v~~~~~~s~~~~~v--g~~~lv~~d~~~g~L~v~~l~sg~ 257 (794)
.+...|..+|+.............-..+.+- ++.++++.+. ++.+.+.|+.+++
T Consensus 205 ---~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~-d~~i~~wd~~~~~ 260 (357)
T 4g56_B 205 ---RILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDE-TGNVSLVNIKNPD 260 (357)
T ss_dssp ---CEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEES-SSCEEEEESSCGG
T ss_pred ---ceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeec-ccceeEEECCCCc
Confidence 6777899999877655322211111112221 3456777663 5789999998876
No 121
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=96.82 E-value=0.3 Score=51.31 Aligned_cols=193 Identities=11% Similarity=0.070 Sum_probs=101.4
Q ss_pred CCCEEEEEeCCCEEEEEECcCCc--cceEEEcCcccceeeeeeeeCCEEEEEEccCCeEEEEeCCCCcEeEEEeccCccc
Q 003800 52 GRKRVVVSTEENVIASLDLRHGE--IFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKH 129 (794)
Q Consensus 52 ~~~~Vyv~t~~g~l~ALn~~tG~--ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~l~~~~~ 129 (794)
+++.+++++.+|.|.-.|..+|+ .+.+..- ....+..+.....+..++.++.++.++.||..+|+..-........
T Consensus 19 ~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~- 96 (372)
T 1k8k_C 19 DRTQIAICPNNHEVHIYEKSGNKWVQVHELKE-HNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRIN- 96 (372)
T ss_dssp TSSEEEEECSSSEEEEEEEETTEEEEEEEEEC-CSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCS-
T ss_pred CCCEEEEEeCCCEEEEEeCCCCcEEeeeeecC-CCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCC-
Confidence 35678888899999999999997 4444332 2223444433334445555555679999999999876665543211
Q ss_pred cCCccccccccccccCCeEEEEE-CCEEEEEECCCCcEEEEEecc-Cc-ceeeeeEEEEecCCEEEEEEecCCceeEEEE
Q 003800 130 SKPLLLVPTNLKVDKDSLILVSS-KGCLHAVSSIDGEILWTRDFA-AE-SVEVQQVIQLDESDQIYVVGYAGSSQFHAYQ 206 (794)
Q Consensus 130 s~~~~~~~~~~~~~~~~~V~V~~-~g~l~ald~~tG~~~W~~~~~-~~-~~~~~~~v~s~~~~~vyv~~~~g~~~~~v~a 206 (794)
.....+. ...+ +..+++.+ +|.+...|..+++..|..... .+ ......+.....+..++..+.+| .+..
T Consensus 97 -~~v~~~~--~~~~-~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg----~i~~ 168 (372)
T 1k8k_C 97 -RAARCVR--WAPN-EKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDF----KCRI 168 (372)
T ss_dssp -SCEEEEE--ECTT-SSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTS----CEEE
T ss_pred -CceeEEE--ECCC-CCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCC----CEEE
Confidence 1111111 0111 23444443 777877777777644433221 11 11122222122333444333344 5677
Q ss_pred EEc------------------CCCceeeeeeeecccCccCceEE-EcCcEEEEEECCCCeEEEEEeecce
Q 003800 207 INA------------------MNGELLNHETAAFSGGFVGDVAL-VSSDTLVTLDTTRSILVTVSFKNRK 257 (794)
Q Consensus 207 ld~------------------~tG~~~w~~~v~~~~~~s~~~~~-vg~~~lv~~d~~~g~L~v~~l~sg~ 257 (794)
+|. .+|+.+..... ....+. .+.+ ..+..+++.. ..+.+.+.|+.+++
T Consensus 169 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~-~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~ 235 (372)
T 1k8k_C 169 FSAYIKEVEERPAPTPWGSKMPFGELMFESSS-SCGWVH-GVCFSANGSRVAWVS-HDSTVCLADADKKM 235 (372)
T ss_dssp EECCCTTTSCCCCCBTTBSCCCTTCEEEECCC-CSSCEE-EEEECSSSSEEEEEE-TTTEEEEEEGGGTT
T ss_pred EEcccccccccccccccccccchhhheEecCC-CCCeEE-EEEECCCCCEEEEEe-CCCEEEEEECCCCc
Confidence 774 35555544421 011111 1122 1334666665 46889999999877
No 122
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=96.82 E-value=0.62 Score=49.01 Aligned_cols=190 Identities=11% Similarity=0.014 Sum_probs=101.0
Q ss_pred CCEEEEEeCCCEEEEEECcCCccceEEEcCcccceeeeeeee--CCEEEEEEccCCeEEEEeCCCCcEeEEEeccCcccc
Q 003800 53 RKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIAL--GKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHS 130 (794)
Q Consensus 53 ~~~Vyv~t~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~--g~~~V~Vs~~g~~v~A~d~~tG~llWe~~l~~~~~s 130 (794)
++.|.+-+.++.+...|.++++++.++.....+.+..+.... .+..++.++.++.++.||..+|+...........
T Consensus 94 D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~-- 171 (343)
T 3lrv_A 94 CNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDV-- 171 (343)
T ss_dssp TTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSC--
T ss_pred CCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCC--
Confidence 334444444455555677788877777766544454442222 3444544555679999999999996555333221
Q ss_pred CCccccccccccccCCeEEEE--ECCEEEEEECCCCcEE-EEEec-cCcceeeeeEEEEecCCEEEEEEecCCceeEEEE
Q 003800 131 KPLLLVPTNLKVDKDSLILVS--SKGCLHAVSSIDGEIL-WTRDF-AAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQ 206 (794)
Q Consensus 131 ~~~~~~~~~~~~~~~~~V~V~--~~g~l~ald~~tG~~~-W~~~~-~~~~~~~~~~v~s~~~~~vyv~~~~g~~~~~v~a 206 (794)
....+ ....++.+++. .+|.+...|..+|+.. -+++. .... ...+.. ..++...+.+.++ .+..
T Consensus 172 -~i~~~----~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~--v~~l~f-s~~g~~l~s~~~~----~v~i 239 (343)
T 3lrv_A 172 -EYSSG----VLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAK--IKEVKF-ADNGYWMVVECDQ----TVVC 239 (343)
T ss_dssp -CCCEE----EECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSC--EEEEEE-CTTSSEEEEEESS----BEEE
T ss_pred -ceEEE----EECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCC--EEEEEE-eCCCCEEEEEeCC----eEEE
Confidence 11111 12224445554 3899999999999866 55544 1111 222322 2334444444444 6778
Q ss_pred EEcCCCceeeeeeeec-c-cCccCc-eEEE-cCcEEEEEECCCCeEEEEEeecc
Q 003800 207 INAMNGELLNHETAAF-S-GGFVGD-VALV-SSDTLVTLDTTRSILVTVSFKNR 256 (794)
Q Consensus 207 ld~~tG~~~w~~~v~~-~-~~~s~~-~~~v-g~~~lv~~d~~~g~L~v~~l~sg 256 (794)
.|+.+++.......-. . ..+... +.+- .+.++++.....+.+.+.++.++
T Consensus 240 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~ 293 (343)
T 3lrv_A 240 FDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKK 293 (343)
T ss_dssp EETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred EEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEccc
Confidence 8999887764432100 0 111111 2221 34466665543577888887654
No 123
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=96.80 E-value=0.039 Score=59.25 Aligned_cols=153 Identities=10% Similarity=0.074 Sum_probs=88.9
Q ss_pred cCCCEEEEEeCCCEEEEEECcCCccceEEEcCcccceeeeeee-eCCEEEEEEccCCeEEEEeCCCCcEeEEEeccCccc
Q 003800 51 TGRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIA-LGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKH 129 (794)
Q Consensus 51 ~~~~~Vyv~t~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~-~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~l~~~~~ 129 (794)
.+++.++.++.+|.|.-.|.++|+.+-...- ....+..+... .+..+++.++.++.|+.||..+|+..-+........
T Consensus 137 pdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~-h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~ 215 (344)
T 4gqb_B 137 SSGTQAVSGSKDICIKVWDLAQQVVLSSYRA-HAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGY 215 (344)
T ss_dssp TTSSEEEEEETTSCEEEEETTTTEEEEEECC-CSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CC
T ss_pred CCCCEEEEEeCCCeEEEEECCCCcEEEEEcC-cCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeec
Confidence 3466789999999999999999988755432 12234433222 233444435556799999999999887654432211
Q ss_pred cCCccccccccccccCCeEEE-EE-CCEEEEEECCCCcEEEEEeccCcceeeeeEEEEecCCEEEE-EEecCCceeEEEE
Q 003800 130 SKPLLLVPTNLKVDKDSLILV-SS-KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYV-VGYAGSSQFHAYQ 206 (794)
Q Consensus 130 s~~~~~~~~~~~~~~~~~V~V-~~-~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~s~~~~~vyv-~~~~g~~~~~v~a 206 (794)
....+. .... ++.+++ .+ +|.|...|..+|+.+.++....... ..+..+..+..+.+ .+.+| .+..
T Consensus 216 --~~~~~~--~~p~-~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v--~~v~fsp~g~~~lasgs~D~----~i~v 284 (344)
T 4gqb_B 216 --LPTSLA--WHPQ-QSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCV--TGLVFSPHSVPFLASLSEDC----SLAV 284 (344)
T ss_dssp --CEEEEE--ECSS-CTTEEEEEETTSEEEEEESCC--CCEEEECCSSCE--EEEEECSSSSCCEEEEETTS----CEEE
T ss_pred --cceeee--ecCC-CCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCE--EEEEEccCCCeEEEEEeCCC----eEEE
Confidence 011110 0112 344444 33 8999999999999888876543332 22322223334443 33444 6777
Q ss_pred EEcCCCcee
Q 003800 207 INAMNGELL 215 (794)
Q Consensus 207 ld~~tG~~~ 215 (794)
+|..+|+..
T Consensus 285 wd~~~~~~~ 293 (344)
T 4gqb_B 285 LDSSLSELF 293 (344)
T ss_dssp ECTTCCEEE
T ss_pred EECCCCcEE
Confidence 899998765
No 124
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=96.80 E-value=0.094 Score=54.82 Aligned_cols=185 Identities=6% Similarity=-0.049 Sum_probs=107.1
Q ss_pred CEEEEEeCCCEEEEEECcC-CccceEEEcCcccceeeeeeeeCCEEEEEEccCCeEEEEeCCCCcEeEEEeccCccccCC
Q 003800 54 KRVVVSTEENVIASLDLRH-GEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKP 132 (794)
Q Consensus 54 ~~Vyv~t~~g~l~ALn~~t-G~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~l~~~~~s~~ 132 (794)
+.+++++.+|.|.-.|.++ |...-+........+..+.....+..++.++.++.|+.||..+|+.+.......... .
T Consensus 55 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~--~ 132 (368)
T 3mmy_A 55 NFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVK--T 132 (368)
T ss_dssp EEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEE--E
T ss_pred eEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCceeeccccCceE--E
Confidence 5688899999999999998 554423332233334444323344455555556799999999999887655433321 1
Q ss_pred ccccccccccccCCeEEE-EE-CCEEEEEECCCCcEEEEEeccCcceeeeeEEEEecCCEEEEEEecCCceeEEEEEEcC
Q 003800 133 LLLVPTNLKVDKDSLILV-SS-KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAM 210 (794)
Q Consensus 133 ~~~~~~~~~~~~~~~V~V-~~-~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~s~~~~~vyv~~~~g~~~~~v~ald~~ 210 (794)
+.+.+ ..++..++ .+ +|.+...|..+|+............ .+ ......+++.+..+ .+..+|..
T Consensus 133 ~~~~~-----~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~----~i~~~~~~ 198 (368)
T 3mmy_A 133 IHWIK-----APNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCY---CA--DVIYPMAVVATAER----GLIVYQLE 198 (368)
T ss_dssp EEEEE-----CSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEE---EE--EEETTEEEEEEGGG----CEEEEECS
T ss_pred EEEEe-----CCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCce---EE--EecCCeeEEEeCCC----cEEEEEec
Confidence 11210 22444444 43 8999999999999988887765322 11 23455566555454 57777887
Q ss_pred CCceeeeeeeecccCccCceEE--EcCc----EEEEEECCCCeEEEEEeecc
Q 003800 211 NGELLNHETAAFSGGFVGDVAL--VSSD----TLVTLDTTRSILVTVSFKNR 256 (794)
Q Consensus 211 tG~~~w~~~v~~~~~~s~~~~~--vg~~----~lv~~d~~~g~L~v~~l~sg 256 (794)
++...+..... +......++- .... .+++.. .+|.+.+.++..+
T Consensus 199 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~dg~i~i~~~~~~ 248 (368)
T 3mmy_A 199 NQPSEFRRIES-PLKHQHRCVAIFKDKQNKPTGFALGS-IEGRVAIHYINPP 248 (368)
T ss_dssp SSCEEEEECCC-SCSSCEEEEEEEECTTSCEEEEEEEE-TTSEEEEEESSCS
T ss_pred cccchhhhccc-cccCCCceEEEcccCCCCCCeEEEec-CCCcEEEEecCCC
Confidence 77665544211 1111111111 1111 144444 4678888888765
No 125
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=96.79 E-value=0.19 Score=54.87 Aligned_cols=189 Identities=13% Similarity=0.089 Sum_probs=105.7
Q ss_pred CCCEEEEEeCCCEEEEEECcCCccceEEEcCcccceeeeeeeeCCEEEEEEccCCeEEEEeCCCCcEeEEEeccCccccC
Q 003800 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSK 131 (794)
Q Consensus 52 ~~~~Vyv~t~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~l~~~~~s~ 131 (794)
+++.+++++.+|.|.-.|.++++.+-...- ....+..+.....+..++.++.++.++.||..+|..+-......... .
T Consensus 161 ~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~-h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v-~ 238 (410)
T 1vyh_C 161 SGKLLASCSADMTIKLWDFQGFECIRTMHG-HDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWV-R 238 (410)
T ss_dssp TSSEEEEEETTSCCCEEETTSSCEEECCCC-CSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCE-E
T ss_pred CCCEEEEEeCCCeEEEEeCCCCceeEEEcC-CCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccE-E
Confidence 456788889999999999988876533211 11234444323344455545567899999999999887766544322 1
Q ss_pred CccccccccccccCCeEEE-EE-CCEEEEEECCCCcEEEEEeccCcceeeeeEEEEe-------------------cCCE
Q 003800 132 PLLLVPTNLKVDKDSLILV-SS-KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLD-------------------ESDQ 190 (794)
Q Consensus 132 ~~~~~~~~~~~~~~~~V~V-~~-~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~s~-------------------~~~~ 190 (794)
.+ ....++..++ .+ ++.+...|..+|+..=+........ ..+.... .++.
T Consensus 239 ---~~----~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v--~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 309 (410)
T 1vyh_C 239 ---MV----RPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVV--ECISWAPESSYSSISEATGSETKKSGKPGP 309 (410)
T ss_dssp ---EE----EECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCE--EEEEECCSCGGGGGGGCCSCC-------CC
T ss_pred ---EE----EECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceE--EEEEEcCcccccchhhhccccccccCCCCC
Confidence 11 1112344444 33 8899999998887665543322211 1111000 0133
Q ss_pred EEEEEecCCceeEEEEEEcCCCceeeeeeeecccCccCceEEE-cCcEEEEEECCCCeEEEEEeecce
Q 003800 191 IYVVGYAGSSQFHAYQINAMNGELLNHETAAFSGGFVGDVALV-SSDTLVTLDTTRSILVTVSFKNRK 257 (794)
Q Consensus 191 vyv~~~~g~~~~~v~ald~~tG~~~w~~~v~~~~~~s~~~~~v-g~~~lv~~d~~~g~L~v~~l~sg~ 257 (794)
.++.+...+ .+..+|..+|+.+....-. ...+. .+.+- ++.++++.. ..+.+++-|+.+++
T Consensus 310 ~l~sgs~D~---~i~iwd~~~~~~~~~~~~h-~~~v~-~v~~~~~g~~l~s~s-~D~~i~vwd~~~~~ 371 (410)
T 1vyh_C 310 FLLSGSRDK---TIKMWDVSTGMCLMTLVGH-DNWVR-GVLFHSGGKFILSCA-DDKTLRVWDYKNKR 371 (410)
T ss_dssp EEEEEETTS---EEEEEETTTTEEEEEEECC-SSCEE-EEEECSSSSCEEEEE-TTTEEEEECCTTSC
T ss_pred EEEEEeCCC---eEEEEECCCCceEEEEECC-CCcEE-EEEEcCCCCEEEEEe-CCCeEEEEECCCCc
Confidence 333333322 7888999999887655311 11111 12221 334555554 46888888887766
No 126
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=96.78 E-value=0.19 Score=51.19 Aligned_cols=183 Identities=10% Similarity=0.115 Sum_probs=98.9
Q ss_pred CCEEEEEeC-CCEEEEEECcCCccceEEEcCcc-cceeeeeeeeCCEEEEEEc-cCCeEEEEeCCCCcEeEEEeccCccc
Q 003800 53 RKRVVVSTE-ENVIASLDLRHGEIFWRHVLGIN-DVVDGIDIALGKYVITLSS-DGSTLRAWNLPDGQMVWESFLRGSKH 129 (794)
Q Consensus 53 ~~~Vyv~t~-~g~l~ALn~~tG~ivWR~~l~~~-~~i~~l~~~~g~~~V~Vs~-~g~~v~A~d~~tG~llWe~~l~~~~~ 129 (794)
++.+|+++. .+.|..+|++ |+.. +..++.. ....++. ...++.++++. .++.|+.+|+. |+.. +..+... .
T Consensus 72 ~g~l~v~~~~~~~v~~~d~~-g~~~-~~~~~~~~~~~~~i~-~~~~g~l~v~~~~~~~i~~~~~~-g~~~-~~~~~~~-~ 145 (300)
T 2qc5_A 72 LGDIWFTENGANKIGKLSKK-GGFT-EYPLPQPDSGPYGIT-EGLNGDIWFTQLNGDRIGKLTAD-GTIY-EYDLPNK-G 145 (300)
T ss_dssp TSCEEEEETTTTEEEEECTT-SCEE-EEECSSTTCCEEEEE-ECSTTCEEEEETTTTEEEEECTT-SCEE-EEECSST-T
T ss_pred CCCEEEEecCCCeEEEECCC-CCeE-EecCCCCCCCCccce-ECCCCCEEEEccCCCeEEEECCC-CCEE-EccCCCC-C
Confidence 567999886 6889999988 8753 3333322 1223332 22234455554 35789999997 8876 3333211 1
Q ss_pred cCCccccccccccccCCeEEEEE--CCEEEEEECCCCcEEEEEeccCcceeeeeEEEEecCCEEEEEEecCCceeEEEEE
Q 003800 130 SKPLLLVPTNLKVDKDSLILVSS--KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQI 207 (794)
Q Consensus 130 s~~~~~~~~~~~~~~~~~V~V~~--~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~s~~~~~vyv~~~~g~~~~~v~al 207 (794)
..+.. +..+.++.+++.. ++.|+.+|. +|+..- +..+.....+..+. ...++.+|+....++ .+..+
T Consensus 146 -~~~~~----i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~~~~~~~~~~i~-~d~~g~l~v~~~~~~---~i~~~ 214 (300)
T 2qc5_A 146 -SYPAF----ITLGSDNALWFTENQNNSIGRITN-TGKLEE-YPLPTNAAAPVGIT-SGNDGALWFVEIMGN---KIGRI 214 (300)
T ss_dssp -CCEEE----EEECTTSSEEEEETTTTEEEEECT-TCCEEE-EECSSTTCCEEEEE-ECTTSSEEEEETTTT---EEEEE
T ss_pred -CCcee----EEECCCCCEEEEecCCCeEEEECC-CCcEEE-eeCCCCCCCcceEE-ECCCCCEEEEccCCC---EEEEE
Confidence 01111 1233356688775 789999998 777652 33332222244443 234678998665443 68889
Q ss_pred EcCCCceeeeeeeecccCccC-ceEEE-cCcEEEEEECCCCeEEEEEeecce
Q 003800 208 NAMNGELLNHETAAFSGGFVG-DVALV-SSDTLVTLDTTRSILVTVSFKNRK 257 (794)
Q Consensus 208 d~~tG~~~w~~~v~~~~~~s~-~~~~v-g~~~lv~~d~~~g~L~v~~l~sg~ 257 (794)
|+ +|+..... .+..... ..+.+ .++.+.+.+..++.+..++. +++
T Consensus 215 ~~-~g~~~~~~---~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~ 261 (300)
T 2qc5_A 215 TT-TGEISEYD---IPTPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNT 261 (300)
T ss_dssp CT-TCCEEEEE---CSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSC
T ss_pred cC-CCcEEEEE---CCCCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCc
Confidence 98 77755421 2222222 11222 22334444444466666665 444
No 127
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=96.78 E-value=0.61 Score=48.71 Aligned_cols=192 Identities=16% Similarity=0.153 Sum_probs=103.6
Q ss_pred cCCCEEEEEeCCCEEEEEECcCCccceEEEcCcccceeeeeeeeCCEEEEEEccCCeEEEEeCCCCcEeEEEeccCcccc
Q 003800 51 TGRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHS 130 (794)
Q Consensus 51 ~~~~~Vyv~t~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~l~~~~~s 130 (794)
.++..++.++.++.|.-.|.++|+.+-+..- ....+..+.....+..++.++.++.++.||.. |..+-.........
T Consensus 75 ~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v- 151 (319)
T 3frx_A 75 ADGAYALSASWDKTLRLWDVATGETYQRFVG-HKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWV- 151 (319)
T ss_dssp TTSSEEEEEETTSEEEEEETTTTEEEEEEEC-CSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCE-
T ss_pred CCCCEEEEEeCCCEEEEEECCCCCeeEEEcc-CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcE-
Confidence 3466788999999999999999987655432 22234444223344455545567899999985 55554443332221
Q ss_pred CCccccccccccccCCeEEE-E-ECCEEEEEECCCCcEEEEEeccCcceeeeeEEEEecCCEEEEEEecCCceeEEEEEE
Q 003800 131 KPLLLVPTNLKVDKDSLILV-S-SKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQIN 208 (794)
Q Consensus 131 ~~~~~~~~~~~~~~~~~V~V-~-~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~s~~~~~vyv~~~~g~~~~~v~ald 208 (794)
....+.+.. ....++..++ . .++.+...|..+++..-.+...... ...+..+..+..+...+.+| .+...|
T Consensus 152 ~~~~~~~~~-~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~--v~~~~~sp~g~~l~s~~~dg----~i~iwd 224 (319)
T 3frx_A 152 SQVRVVPNE-KADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSN--INTLTASPDGTLIASAGKDG----EIMLWN 224 (319)
T ss_dssp EEEEECCC-------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSC--EEEEEECTTSSEEEEEETTC----EEEEEE
T ss_pred EEEEEccCC-CCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCc--EEEEEEcCCCCEEEEEeCCC----eEEEEE
Confidence 111111100 0011222333 3 3889999999888776655433222 22232222333344333344 788899
Q ss_pred cCCCceeeeeeeecccCccCceEE-EcCcEEEEEECCCCeEEEEEeecce
Q 003800 209 AMNGELLNHETAAFSGGFVGDVAL-VSSDTLVTLDTTRSILVTVSFKNRK 257 (794)
Q Consensus 209 ~~tG~~~w~~~v~~~~~~s~~~~~-vg~~~lv~~d~~~g~L~v~~l~sg~ 257 (794)
..+++.+.+... +..+.. +.+ ..+..+++.. .+.+.+.++..+.
T Consensus 225 ~~~~~~~~~~~~--~~~v~~-~~~sp~~~~la~~~--~~~i~v~~~~~~~ 269 (319)
T 3frx_A 225 LAAKKAMYTLSA--QDEVFS-LAFSPNRYWLAAAT--ATGIKVFSLDPQY 269 (319)
T ss_dssp TTTTEEEEEEEC--CSCEEE-EEECSSSSEEEEEE--TTEEEEEEETTEE
T ss_pred CCCCcEEEEecC--CCcEEE-EEEcCCCCEEEEEc--CCCcEEEEeCcCe
Confidence 999998876632 222211 112 1334555554 2457777776654
No 128
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=96.76 E-value=0.093 Score=52.95 Aligned_cols=147 Identities=11% Similarity=-0.002 Sum_probs=76.4
Q ss_pred CCEEEE-E-eCCCEEEEEECcCCccceEEEcCcccceeeeeeeeCCEEEEEEccCCeEEEEeCCCCcEeEEEeccCcccc
Q 003800 53 RKRVVV-S-TEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHS 130 (794)
Q Consensus 53 ~~~Vyv-~-t~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~l~~~~~s 130 (794)
++++|+ + +..+.|..+|+.++.. +...........++. ...++.++++..++.|+.||+.+ ...+........
T Consensus 34 ~g~l~v~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~p~~i~-~~~~g~l~v~~~~~~i~~~d~~~-~~~~~~~~~~~~-- 108 (270)
T 1rwi_B 34 AGNVYVTSEGMYGRVVKLATGSTGT-TVLPFNGLYQPQGLA-VDGAGTVYVTDFNNRVVTLAAGS-NNQTVLPFDGLN-- 108 (270)
T ss_dssp TCCEEEEECSSSCEEEEECC------EECCCCSCCSCCCEE-ECTTCCEEEEETTTEEEEECTTC-SCCEECCCCSCS--
T ss_pred CCCEEEEccCCCCcEEEecCCCccc-ceEeeCCcCCcceeE-ECCCCCEEEEcCCCEEEEEeCCC-ceEeeeecCCcC--
Confidence 567998 7 5678999999876653 222221111222332 23333466554467899999864 444444322211
Q ss_pred CCccccccccccccCCeEEEEE--CCEEEEEECCCCcEEEEEeccCcceeeeeEEEEecCCEEEEEEecCCceeEEEEEE
Q 003800 131 KPLLLVPTNLKVDKDSLILVSS--KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQIN 208 (794)
Q Consensus 131 ~~~~~~~~~~~~~~~~~V~V~~--~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~s~~~~~vyv~~~~g~~~~~v~ald 208 (794)
.+.-+ ..+.++.+++.. ++.++.++..++...+.... ....+..+. ...++.+|+....++ .+..+|
T Consensus 109 -~p~~i----~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~--~~~~p~~i~-~~~~g~l~v~~~~~~---~i~~~~ 177 (270)
T 1rwi_B 109 -YPEGL----AVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFT--GLNDPDGVA-VDNSGNVYVTDTDNN---RVVKLE 177 (270)
T ss_dssp -SEEEE----EECTTCCEEEEEGGGTEEEEECTTCCSCEECCCC--SCCSCCCEE-ECTTCCEEEEEGGGT---EEEEEC
T ss_pred -CCcce----EECCCCCEEEEECCCCEEEEEECCCceeEeeccc--cCCCceeEE-EeCCCCEEEEECCCC---EEEEEe
Confidence 11111 233356677763 78999997666554432111 111133332 134567888665433 788999
Q ss_pred cCCCcee
Q 003800 209 AMNGELL 215 (794)
Q Consensus 209 ~~tG~~~ 215 (794)
+.++...
T Consensus 178 ~~~~~~~ 184 (270)
T 1rwi_B 178 AESNNQV 184 (270)
T ss_dssp TTTCCEE
T ss_pred cCCCceE
Confidence 8776543
No 129
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=96.75 E-value=0.31 Score=53.62 Aligned_cols=156 Identities=7% Similarity=-0.008 Sum_probs=82.7
Q ss_pred CCEE-EEEEccCCeEEEEeCC--CCcEeEEEeccC--ccccCCccccccccccccCCeEEEEE-CCEEEEEECCCCcEEE
Q 003800 95 GKYV-ITLSSDGSTLRAWNLP--DGQMVWESFLRG--SKHSKPLLLVPTNLKVDKDSLILVSS-KGCLHAVSSIDGEILW 168 (794)
Q Consensus 95 g~~~-V~Vs~~g~~v~A~d~~--tG~llWe~~l~~--~~~s~~~~~~~~~~~~~~~~~V~V~~-~g~l~ald~~tG~~~W 168 (794)
.+.. ++.++.++.|+.||.. +|+.+-...... ... ..+.+.+ + +..+++.+ +|.++.++..+|+..-
T Consensus 113 d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v-~~~~~sp-----~-~~~l~~~~~~g~v~~~~~~~~~~~~ 185 (450)
T 2vdu_B 113 DESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRP-NAISIAE-----D-DTTVIIADKFGDVYSIDINSIPEEK 185 (450)
T ss_dssp TSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCE-EEEEECT-----T-SSEEEEEETTSEEEEEETTSCCCSS
T ss_pred CCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCc-eEEEEcC-----C-CCEEEEEeCCCcEEEEecCCccccc
Confidence 3344 4556666899999999 888776654221 111 1111111 2 33454444 7899999988876432
Q ss_pred ----EEeccCcceeeeeEEEEec--CCEEEEEEecCCceeEEEEEEcCCCceeeeeeeecccCccCceEEEcCcEEEEEE
Q 003800 169 ----TRDFAAESVEVQQVIQLDE--SDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAFSGGFVGDVALVSSDTLVTLD 242 (794)
Q Consensus 169 ----~~~~~~~~~~~~~~v~s~~--~~~vyv~~~~g~~~~~v~ald~~tG~~~w~~~v~~~~~~s~~~~~vg~~~lv~~d 242 (794)
........ ...+..+.. ++..++.+...+ .+..+|..+|+.+......-...+..-++. .+.++++..
T Consensus 186 ~~~~~~~~h~~~--v~~~~~sp~~~~~~~l~s~~~d~---~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~ 259 (450)
T 2vdu_B 186 FTQEPILGHVSM--LTDVHLIKDSDGHQFIITSDRDE---HIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAG 259 (450)
T ss_dssp CCCCCSEECSSC--EEEEEEEECTTSCEEEEEEETTS---CEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEEE
T ss_pred ccceeeecccCc--eEEEEEcCCCCCCcEEEEEcCCC---cEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEEe
Confidence 11111111 222222223 144444443332 677888899987765321222222221222 445666665
Q ss_pred CCCCeEEEEEeecceeeeEEEee
Q 003800 243 TTRSILVTVSFKNRKIAFQETHL 265 (794)
Q Consensus 243 ~~~g~L~v~~l~sg~~~~~~~~l 265 (794)
..+.+.+-|+.+++. .+.+.+
T Consensus 260 -~d~~v~vwd~~~~~~-~~~~~~ 280 (450)
T 2vdu_B 260 -GDDKIFAWDWKTGKN-LSTFDY 280 (450)
T ss_dssp -SSSEEEEEETTTCCE-EEEEEC
T ss_pred -CCCeEEEEECCCCcE-eeeecc
Confidence 468999999999873 454543
No 130
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=96.69 E-value=0.12 Score=54.57 Aligned_cols=157 Identities=8% Similarity=-0.026 Sum_probs=86.6
Q ss_pred CCCEEEEEeCCCEEEEEECcCCccceEEEcCcccceeeeeeeeCCEEEEEEccCCeEEEEeCCCCcEe-EEEec-cCccc
Q 003800 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMV-WESFL-RGSKH 129 (794)
Q Consensus 52 ~~~~Vyv~t~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~tG~ll-We~~l-~~~~~ 129 (794)
+++.+++++.+|.|.-.|.++|+............+..+.....+..++.++.++.|+.||..+|+.. -+... .....
T Consensus 138 ~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v 217 (343)
T 3lrv_A 138 NTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKI 217 (343)
T ss_dssp -CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCE
T ss_pred CCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCE
Confidence 45678889999999999999999855443333323444433334556665666789999999999977 55544 22221
Q ss_pred cCCccccccccccccCCeEEEEECCEEEEEECCCCcEEEEEecc-Ccceeee--eEEEEecCCEEEEEEecCCceeEEEE
Q 003800 130 SKPLLLVPTNLKVDKDSLILVSSKGCLHAVSSIDGEILWTRDFA-AESVEVQ--QVIQLDESDQIYVVGYAGSSQFHAYQ 206 (794)
Q Consensus 130 s~~~~~~~~~~~~~~~~~V~V~~~g~l~ald~~tG~~~W~~~~~-~~~~~~~--~~v~s~~~~~vyv~~~~g~~~~~v~a 206 (794)
..+.+.+ + +..++..+++.+...|..+++...+...- ....... .+.. ..++...+.+..++. .+..
T Consensus 218 -~~l~fs~-----~-g~~l~s~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~l~~~s~~d~--~i~v 287 (343)
T 3lrv_A 218 -KEVKFAD-----N-GYWMVVECDQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDI-DDSGKNMIAYSNESN--SLTI 287 (343)
T ss_dssp -EEEEECT-----T-SSEEEEEESSBEEEEETTSSTTCBSSCCCBC-----CCEEEEE-CTTSSEEEEEETTTT--EEEE
T ss_pred -EEEEEeC-----C-CCEEEEEeCCeEEEEEcCCCCcceeecccccccccccceEEEE-CCCCCEEEEecCCCC--cEEE
Confidence 1111111 1 23344446778888888887654332210 0001000 1211 223444444333122 4555
Q ss_pred EEcCCCceeeee
Q 003800 207 INAMNGELLNHE 218 (794)
Q Consensus 207 ld~~tG~~~w~~ 218 (794)
++..++...|+.
T Consensus 288 ~~~~~~~~~~~~ 299 (343)
T 3lrv_A 288 YKFDKKTKNWTK 299 (343)
T ss_dssp EEECTTTCSEEE
T ss_pred EEEcccccceEe
Confidence 666677777876
No 131
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=96.67 E-value=0.15 Score=55.22 Aligned_cols=193 Identities=15% Similarity=0.104 Sum_probs=99.7
Q ss_pred CCCEEEEEeCCCEEEEEECcCCccceEEEcCcccceeeeeeeeCCEEEEEEccCCeEEEEeCCCCcEeEEEeccCccccC
Q 003800 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSK 131 (794)
Q Consensus 52 ~~~~Vyv~t~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~l~~~~~s~ 131 (794)
+++.+++++.+|.|...|.++|+.+-...- ....+..+.....+..++.++.++.++.||..+|+............
T Consensus 134 dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~-h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~-- 210 (393)
T 1erj_A 134 DGKFLATGAEDRLIRIWDIENRKIVMILQG-HEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVT-- 210 (393)
T ss_dssp TSSEEEEEETTSCEEEEETTTTEEEEEECC-CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEE--
T ss_pred CCCEEEEEcCCCeEEEEECCCCcEEEEEcc-CCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcCCCcE--
Confidence 466788899999999999999987544321 12234433222233444445556899999999999988877554322
Q ss_pred CccccccccccccCCeEEEEE-CCEEEEEECCCCcEEEEEeccCc-----ceeeeeEEEEecCCEEEEEEecCCceeEEE
Q 003800 132 PLLLVPTNLKVDKDSLILVSS-KGCLHAVSSIDGEILWTRDFAAE-----SVEVQQVIQLDESDQIYVVGYAGSSQFHAY 205 (794)
Q Consensus 132 ~~~~~~~~~~~~~~~~V~V~~-~g~l~ald~~tG~~~W~~~~~~~-----~~~~~~~v~s~~~~~vyv~~~~g~~~~~v~ 205 (794)
...+. ...+..++..+ +|.+...|..+|+..-....... ......+..+..+..++..+.+| .+.
T Consensus 211 ~~~~~-----~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~----~v~ 281 (393)
T 1erj_A 211 TVAVS-----PGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDR----SVK 281 (393)
T ss_dssp EEEEC-----STTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTS----EEE
T ss_pred EEEEE-----CCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCC----EEE
Confidence 11111 11123344444 89999999999987766532211 11122232222333444433344 677
Q ss_pred EEEcCCCceeeeeeeecc-------cCccC---ceEEE-cCcEEEEEECCCCeEEEEEeecce
Q 003800 206 QINAMNGELLNHETAAFS-------GGFVG---DVALV-SSDTLVTLDTTRSILVTVSFKNRK 257 (794)
Q Consensus 206 ald~~tG~~~w~~~v~~~-------~~~s~---~~~~v-g~~~lv~~d~~~g~L~v~~l~sg~ 257 (794)
..|..++........... .+-.+ .+.+. .+.++++.. ..+.+++-|+.+++
T Consensus 282 ~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs-~D~~v~iwd~~~~~ 343 (393)
T 1erj_A 282 LWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGS-KDRGVLFWDKKSGN 343 (393)
T ss_dssp EEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEE-TTSEEEEEETTTCC
T ss_pred EEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEe-CCCeEEEEECCCCe
Confidence 778776654322110000 00011 11111 234555554 35778888877766
No 132
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=96.63 E-value=1.1 Score=48.77 Aligned_cols=146 Identities=10% Similarity=0.070 Sum_probs=84.6
Q ss_pred EEEEeCCCEEEEEECcCCccceEEEcCcc-cceeeeeeeeCCEEEEEEccCCeEEEEeCCCCcEeEEEeccCccccCCcc
Q 003800 56 VVVSTEENVIASLDLRHGEIFWRHVLGIN-DVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLL 134 (794)
Q Consensus 56 Vyv~t~~g~l~ALn~~tG~ivWR~~l~~~-~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~l~~~~~s~~~~ 134 (794)
+++..-++.|.--|+.||+..-...+... ..+..+.....+..+++++.++.|+.||..+|+.+.......... .
T Consensus 118 ~lAvgld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v----~ 193 (420)
T 4gga_A 118 VLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARV----G 193 (420)
T ss_dssp EEEEEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCE----E
T ss_pred EEEEEeCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCce----E
Confidence 44445589999999999998877777554 235544333344556656667899999999999998887654322 1
Q ss_pred ccccccccccCCeEEEEE-CCEEEEEECCCCc-EEEEEeccCcceeeeeEEEEecCCEEEEEEecCCceeEEEEEEcCCC
Q 003800 135 LVPTNLKVDKDSLILVSS-KGCLHAVSSIDGE-ILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNG 212 (794)
Q Consensus 135 ~~~~~~~~~~~~~V~V~~-~g~l~ald~~tG~-~~W~~~~~~~~~~~~~~v~s~~~~~vyv~~~~g~~~~~v~ald~~tG 212 (794)
.+ ..+ +..++..+ ++.+...|..+.. ...+........ ..+.....+..+...+.+| .+...|..+|
T Consensus 194 ~~----s~~-~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~--~~~~~~~~g~~l~s~~~D~----~v~i~~~~~~ 262 (420)
T 4gga_A 194 SL----SWN-SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEV--CGLRWAPDGRHLASGGNDN----LVNVWPSAPG 262 (420)
T ss_dssp EE----EEE-TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCE--EEEEECTTSSEEEEEETTS----CEEEEESSCC
T ss_pred EE----eeC-CCEEEEEeCCCceeEeeecccceeeEEecccccce--eeeeecCCCCeeeeeeccc----cceEEeeccc
Confidence 11 112 23333333 7787777766543 333333222211 1121122333444434344 5777788888
Q ss_pred ceee
Q 003800 213 ELLN 216 (794)
Q Consensus 213 ~~~w 216 (794)
+..+
T Consensus 263 ~~~~ 266 (420)
T 4gga_A 263 EGGW 266 (420)
T ss_dssp SSCS
T ss_pred cccc
Confidence 7543
No 133
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=96.63 E-value=0.069 Score=55.50 Aligned_cols=147 Identities=7% Similarity=0.051 Sum_probs=87.4
Q ss_pred CEEEEEeCCCEEEEEECcCCccceEEEcCcccceeeeeeeeCCEEEEEEccCCeEEEEeCCCCcEeEEEeccCccccCCc
Q 003800 54 KRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPL 133 (794)
Q Consensus 54 ~~Vyv~t~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~l~~~~~s~~~ 133 (794)
..++.++.++.|...|.++|+.+-+..-. ...+..+.....+..++.++.++.++.||..+++.+.......... ..
T Consensus 186 ~~~~s~~~d~~i~i~d~~~~~~~~~~~~h-~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~--~~ 262 (340)
T 4aow_A 186 PIIVSCGWDKLVKVWNLANCKLKTNHIGH-TGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIIN--AL 262 (340)
T ss_dssp CEEEEEETTSCEEEEETTTTEEEEEECCC-SSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSSCEE--EE
T ss_pred cEEEEEcCCCEEEEEECCCCceeeEecCC-CCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCceEE--ee
Confidence 34666778999999999999876654322 2234444223344455556667899999999999998887654321 11
Q ss_pred cccccccccccCCeEEEE-ECCEEEEEECCCCcEEEEEeccCcce-------eeeeEEEEecCCEEEEEEecCCceeEEE
Q 003800 134 LLVPTNLKVDKDSLILVS-SKGCLHAVSSIDGEILWTRDFAAESV-------EVQQVIQLDESDQIYVVGYAGSSQFHAY 205 (794)
Q Consensus 134 ~~~~~~~~~~~~~~V~V~-~~g~l~ald~~tG~~~W~~~~~~~~~-------~~~~~v~s~~~~~vyv~~~~g~~~~~v~ 205 (794)
... .++.+++. .++.+...|..++...++.+...... ....+..+.++..++..+.+| .|.
T Consensus 263 ~~~-------~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg----~v~ 331 (340)
T 4aow_A 263 CFS-------PNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDN----LVR 331 (340)
T ss_dssp EEC-------SSSSEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTS----CEE
T ss_pred ecC-------CCCceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCC----EEE
Confidence 111 13445554 69999999999999888876432111 011222122333444444444 577
Q ss_pred EEEcCCCce
Q 003800 206 QINAMNGEL 214 (794)
Q Consensus 206 ald~~tG~~ 214 (794)
..|+.||.+
T Consensus 332 iW~~~tGtr 340 (340)
T 4aow_A 332 VWQVTIGTR 340 (340)
T ss_dssp EEEEEC---
T ss_pred EEeCCCcCC
Confidence 778888853
No 134
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=96.60 E-value=0.099 Score=59.33 Aligned_cols=187 Identities=11% Similarity=0.084 Sum_probs=110.3
Q ss_pred CCCEEEEEeCC----CEEEEEECcCCccceEEEcCcccceeeeeeee-CCEEEEEEccCCeEEEEeCCCCcEeEEEeccC
Q 003800 52 GRKRVVVSTEE----NVIASLDLRHGEIFWRHVLGINDVVDGIDIAL-GKYVITLSSDGSTLRAWNLPDGQMVWESFLRG 126 (794)
Q Consensus 52 ~~~~Vyv~t~~----g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~-g~~~V~Vs~~g~~v~A~d~~tG~llWe~~l~~ 126 (794)
++..+++++.+ +.|...| +|+.+.+..- ....+..+.... +...++.++.++.++.||..+|+.+.......
T Consensus 127 ~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~ 203 (615)
T 1pgu_A 127 EGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSG-HSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHH 203 (615)
T ss_dssp TSSEEEEEECCSSCSEEEEETT--TCCEEEECCS-CSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSS
T ss_pred CCCEEEEeccCCCCccEEEEEE--CCCcceeeec-CCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccC
Confidence 45567777765 5777776 6665544322 122333332222 33255556667899999999999998877554
Q ss_pred c---cccCCccccccccccccC-Ce-EEEEE-CCEEEEEECCCCcEEEEEec---cCcceeeeeEEEEecCCEEEEEEec
Q 003800 127 S---KHSKPLLLVPTNLKVDKD-SL-ILVSS-KGCLHAVSSIDGEILWTRDF---AAESVEVQQVIQLDESDQIYVVGYA 197 (794)
Q Consensus 127 ~---~~s~~~~~~~~~~~~~~~-~~-V~V~~-~g~l~ald~~tG~~~W~~~~---~~~~~~~~~~v~s~~~~~vyv~~~~ 197 (794)
. .. ..+. ...+ +. +++.+ +|.++..|..+|+...+... .... ....+..+ .+..++..+.+
T Consensus 204 ~~~~~v-~~~~-------~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~-~v~~~~~~-~~~~l~~~~~d 273 (615)
T 1pgu_A 204 KQGSFV-RDVE-------FSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQG-GIFALSWL-DSQKFATVGAD 273 (615)
T ss_dssp CTTCCE-EEEE-------ECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCS-CEEEEEES-SSSEEEEEETT
T ss_pred CCCceE-EEEE-------ECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCC-ceEEEEEc-CCCEEEEEcCC
Confidence 3 22 1111 1223 44 44444 89999999999999888722 1111 12233323 34445544444
Q ss_pred CCceeEEEEEEcCCCceeeeeeeecccCccC---ceEEEcCcEEEEEECCCCeEEEEEeecce
Q 003800 198 GSSQFHAYQINAMNGELLNHETAAFSGGFVG---DVALVSSDTLVTLDTTRSILVTVSFKNRK 257 (794)
Q Consensus 198 g~~~~~v~ald~~tG~~~w~~~v~~~~~~s~---~~~~vg~~~lv~~d~~~g~L~v~~l~sg~ 257 (794)
| .+..+|..+|+.+........ .... .+.+..++.+++... ++.+++.++.+++
T Consensus 274 ~----~i~~wd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~-~g~i~~~d~~~~~ 330 (615)
T 1pgu_A 274 A----TIRVWDVTTSKCVQKWTLDKQ-QLGNQQVGVVATGNGRIISLSL-DGTLNFYELGHDE 330 (615)
T ss_dssp S----EEEEEETTTTEEEEEEECCTT-CGGGCEEEEEEEETTEEEEEET-TSCEEEEETTEEE
T ss_pred C----cEEEEECCCCcEEEEEcCCCC-cccCceeEEEeCCCCeEEEEEC-CCCEEEEECCCCc
Confidence 4 788899999998877654311 1111 233335567777764 6889999988765
No 135
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=96.59 E-value=0.15 Score=56.15 Aligned_cols=155 Identities=10% Similarity=0.039 Sum_probs=88.1
Q ss_pred CCCEE-EEEeCCCEEEEEECc--CCccceEEEc-CcccceeeeeeeeCCEEEEEEccCCeEEEEeCCCCcEeE----EEe
Q 003800 52 GRKRV-VVSTEENVIASLDLR--HGEIFWRHVL-GINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVW----ESF 123 (794)
Q Consensus 52 ~~~~V-yv~t~~g~l~ALn~~--tG~ivWR~~l-~~~~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~tG~llW----e~~ 123 (794)
+++.+ ++++.+|.|...|.. +|+.+-.... .....+..+....++..+++++.++.++.|+..+|+..- ...
T Consensus 113 d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~ 192 (450)
T 2vdu_B 113 DESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPIL 192 (450)
T ss_dssp TSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSE
T ss_pred CCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeee
Confidence 45555 567788999999988 8876654321 111223333223344455556666799999999887543 211
Q ss_pred ccCccccCCccccccccccccC---CeEEEE-E-CCEEEEEECCCCcEEEEEeccCcceeeeeEEEEecCCEEEEEEecC
Q 003800 124 LRGSKHSKPLLLVPTNLKVDKD---SLILVS-S-KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAG 198 (794)
Q Consensus 124 l~~~~~s~~~~~~~~~~~~~~~---~~V~V~-~-~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~s~~~~~vyv~~~~g 198 (794)
...... ..+ ....+ +..++. + ++.++..|..+|+....+....... +..+..+ .+..++..+.+|
T Consensus 193 ~h~~~v----~~~----~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~-v~~~~~s-d~~~l~s~~~d~ 262 (450)
T 2vdu_B 193 GHVSML----TDV----HLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHF-VSSICCG-KDYLLLSAGGDD 262 (450)
T ss_dssp ECSSCE----EEE----EEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSC-EEEEEEC-STTEEEEEESSS
T ss_pred cccCce----EEE----EEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCc-eEEEEEC-CCCEEEEEeCCC
Confidence 111111 111 11213 444443 3 8889989988888776643221111 2233323 455555555454
Q ss_pred CceeEEEEEEcCCCceeeeeee
Q 003800 199 SSQFHAYQINAMNGELLNHETA 220 (794)
Q Consensus 199 ~~~~~v~ald~~tG~~~w~~~v 220 (794)
.+..+|..+|+.+.....
T Consensus 263 ----~v~vwd~~~~~~~~~~~~ 280 (450)
T 2vdu_B 263 ----KIFAWDWKTGKNLSTFDY 280 (450)
T ss_dssp ----EEEEEETTTCCEEEEEEC
T ss_pred ----eEEEEECCCCcEeeeecc
Confidence 788999999998876653
No 136
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=96.59 E-value=0.79 Score=46.74 Aligned_cols=145 Identities=10% Similarity=0.045 Sum_probs=80.1
Q ss_pred CEEEEEEccCCeEEEEeCCCCcEeEEEeccCccccCCccccccccccccC-CeEEEEE-CCEEEEEECCCCcEEEEEecc
Q 003800 96 KYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKD-SLILVSS-KGCLHAVSSIDGEILWTRDFA 173 (794)
Q Consensus 96 ~~~V~Vs~~g~~v~A~d~~tG~llWe~~l~~~~~s~~~~~~~~~~~~~~~-~~V~V~~-~g~l~ald~~tG~~~W~~~~~ 173 (794)
++++.++. +++|+.||..+|+.+-...+..... ....+ ....+ +.++..+ +|.+...|..+|+.+.+....
T Consensus 36 ~~~lAvg~-D~tV~iWd~~tg~~~~~~~~~~~~~--~V~~v----~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h 108 (318)
T 4ggc_A 36 GNVLAVAL-DNSVYLWSASSGDILQLLQMEQPGE--YISSV----AWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSH 108 (318)
T ss_dssp TSEEEEEE-TTEEEEEETTTCCEEEEEECCSTTC--CEEEE----EECTTSSEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred CCEEEEEe-CCEEEEEECCCCCEEEEEEecCCCC--eEEEE----EECCCCCEEEEEECCCcEEEeecCCceeEEEecCc
Confidence 34666665 5799999999999988777654321 11111 11113 3444444 899999999999998887654
Q ss_pred CcceeeeeEEEEecCCEEEEEEecCCceeEEEEEEcCCCceeeeeeeecccCccCceEEE-cCcEEEEEECCCCeEEEEE
Q 003800 174 AESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAFSGGFVGDVALV-SSDTLVTLDTTRSILVTVS 252 (794)
Q Consensus 174 ~~~~~~~~~v~s~~~~~vyv~~~~g~~~~~v~ald~~tG~~~w~~~v~~~~~~s~~~~~v-g~~~lv~~d~~~g~L~v~~ 252 (794)
.... ..+ +..+..+...+..+ .+...+..++...-........... .+.+. .+..++... ..+.+.+-|
T Consensus 109 ~~~~--~~~--~~~~~~l~s~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~s~~-~d~~i~iwd 178 (318)
T 4ggc_A 109 SARV--GSL--SWNSYILSSGSRSG----HIHHHDVRVAEHHVATLSGHSQEVC-GLRWAPDGRHLASGG-NDNLVNVWP 178 (318)
T ss_dssp SSCE--EEE--EEETTEEEEEETTS----EEEEEETTSSSCEEEEEECCSSCEE-EEEECTTSSEEEEEE-TTSCEEEEE
T ss_pred cceE--EEe--ecCCCEEEEEecCC----ceEeeecCCCceeEEEEcCccCceE-EEEEcCCCCEEEEEe-cCcceeEEE
Confidence 4332 111 23344444433333 5566666655443222111111111 11111 334555555 458888889
Q ss_pred eecce
Q 003800 253 FKNRK 257 (794)
Q Consensus 253 l~sg~ 257 (794)
+.+++
T Consensus 179 ~~~~~ 183 (318)
T 4ggc_A 179 SAPGE 183 (318)
T ss_dssp SSCBT
T ss_pred CCCCc
Confidence 88765
No 137
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=96.55 E-value=0.3 Score=52.05 Aligned_cols=187 Identities=13% Similarity=0.047 Sum_probs=105.8
Q ss_pred CEEEEEeCCCEEEEEECcCCccceEEEcC-cccceeeeeeee-CCEEEEEEccCCeEEEEeCCCCcEeEEEeccCccccC
Q 003800 54 KRVVVSTEENVIASLDLRHGEIFWRHVLG-INDVVDGIDIAL-GKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSK 131 (794)
Q Consensus 54 ~~Vyv~t~~g~l~ALn~~tG~ivWR~~l~-~~~~i~~l~~~~-g~~~V~Vs~~g~~v~A~d~~tG~llWe~~l~~~~~s~ 131 (794)
..+++++.+|.|.-.|..+|+..-...+. ....+..+.... ++..++.++.++.++.||..+ ..+-......... .
T Consensus 87 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~-~ 164 (383)
T 3ei3_B 87 TTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWD-Y 164 (383)
T ss_dssp TEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSS-C
T ss_pred CEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCC-C
Confidence 57999999999999999999887776542 233444442222 334555566678999999985 4444443322100 0
Q ss_pred CccccccccccccC-CeEEEEE-CCEEEEEECCCCcEEEEEeccCcceeeeeEEEEecCC-EEEEEEecCCceeEEEEEE
Q 003800 132 PLLLVPTNLKVDKD-SLILVSS-KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESD-QIYVVGYAGSSQFHAYQIN 208 (794)
Q Consensus 132 ~~~~~~~~~~~~~~-~~V~V~~-~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~s~~~~-~vyv~~~~g~~~~~v~ald 208 (794)
....+ ....+ ..++..+ +|.+...|. +|+...+........ ..+.....+. .++..+.+| .+..+|
T Consensus 165 ~v~~~----~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v--~~~~~~~~~~~~l~s~~~d~----~i~iwd 233 (383)
T 3ei3_B 165 WYCCV----DVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKV--THAEFNPRCDWLMATSSVDA----TVKLWD 233 (383)
T ss_dssp CEEEE----EEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCE--EEEEECSSCTTEEEEEETTS----EEEEEE
T ss_pred CeEEE----EECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcE--EEEEECCCCCCEEEEEeCCC----EEEEEe
Confidence 11111 11113 3344443 899999998 688888876544332 2232222333 344444444 788889
Q ss_pred cCC----CceeeeeeeecccCccCceEEE--cCcEEEEEECCCCeEEEEEeecce
Q 003800 209 AMN----GELLNHETAAFSGGFVGDVALV--SSDTLVTLDTTRSILVTVSFKNRK 257 (794)
Q Consensus 209 ~~t----G~~~w~~~v~~~~~~s~~~~~v--g~~~lv~~d~~~g~L~v~~l~sg~ 257 (794)
..+ ++.+... .....+.. +.+- .+..+++.. ..+.+.+.|+.+++
T Consensus 234 ~~~~~~~~~~~~~~--~~~~~v~~-~~~s~~~~~~l~~~~-~d~~i~iwd~~~~~ 284 (383)
T 3ei3_B 234 LRNIKDKNSYIAEM--PHEKPVNA-AYFNPTDSTKLLTTD-QRNEIRVYSSYDWS 284 (383)
T ss_dssp GGGCCSTTCEEEEE--ECSSCEEE-EEECTTTSCEEEEEE-SSSEEEEEETTBTT
T ss_pred CCCCCcccceEEEe--cCCCceEE-EEEcCCCCCEEEEEc-CCCcEEEEECCCCc
Confidence 988 4444332 11222211 1221 234566555 45889999988876
No 138
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.55 E-value=0.46 Score=49.71 Aligned_cols=201 Identities=8% Similarity=-0.024 Sum_probs=106.3
Q ss_pred ceeecccccEeeEEeccCceeeeeeeeeccCCCEEEEEeCC------------CEEEEEECcCCccceEEEcCccccee-
Q 003800 22 SLYEDQVGLMDWHQQYIGKVKHAVFHTQKTGRKRVVVSTEE------------NVIASLDLRHGEIFWRHVLGINDVVD- 88 (794)
Q Consensus 22 Al~edqvG~~dW~~~~vG~~~~~~f~~~~~~~~~Vyv~t~~------------g~l~ALn~~tG~ivWR~~l~~~~~i~- 88 (794)
-.|..+.++ |+..-.-.|..-..+.....++.||+.... +.+..+|+.+++ |+..-+-+..-.
T Consensus 16 ~~yd~~~~~--W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~--W~~~~~~p~~r~~ 91 (315)
T 4asc_A 16 VAYDPAANE--CYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSE--WLGMPPLPSPRCL 91 (315)
T ss_dssp EEEETTTTE--EEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTE--EEECCCBSSCEES
T ss_pred EEECCCCCe--EecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCe--EEECCCCCcchhc
Confidence 345555554 876321111111122222346677775541 238899999885 976533221111
Q ss_pred eeeeeeCCEEEEEEccC--------CeEEEEeCCCCcEeEEEeccCccccCCccccccccccccCCeEEEEEC-------
Q 003800 89 GIDIALGKYVITLSSDG--------STLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSSK------- 153 (794)
Q Consensus 89 ~l~~~~g~~~V~Vs~~g--------~~v~A~d~~tG~llWe~~l~~~~~s~~~~~~~~~~~~~~~~~V~V~~~------- 153 (794)
......++.++++||.+ ..+..+|+.+++ |+.....+.. ..... ....++.+++..+
T Consensus 92 ~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~--W~~~~~~p~~-----r~~~~-~~~~~~~iyv~GG~~~~~~~ 163 (315)
T 4asc_A 92 FGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFK--WGESDPLPYV-----VYGHT-VLSHMDLVYVIGGKGSDRKC 163 (315)
T ss_dssp CEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTE--EEECCCCSSC-----CBSCE-EEEETTEEEEECCBCTTSCB
T ss_pred eeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCc--EeECCCCCCc-----cccee-EEEECCEEEEEeCCCCCCcc
Confidence 11124566666667621 469999998875 8865332211 11100 1122566777632
Q ss_pred -CEEEEEECCCCcEEEEEeccCcce-eeeeEEEEecCCEEEEEEecCCc--eeEEEEEEcCCCceeeeeeeecccCccC-
Q 003800 154 -GCLHAVSSIDGEILWTRDFAAESV-EVQQVIQLDESDQIYVVGYAGSS--QFHAYQINAMNGELLNHETAAFSGGFVG- 228 (794)
Q Consensus 154 -g~l~ald~~tG~~~W~~~~~~~~~-~~~~~v~s~~~~~vyv~~~~g~~--~~~v~ald~~tG~~~w~~~v~~~~~~s~- 228 (794)
..+.++|..+. .|+.-.+.+.- ....+ ...++.+|+++...+. .-.+.++|+.++ .|+..-..|.....
T Consensus 164 ~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~--~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~ 237 (315)
T 4asc_A 164 LNKMCVYDPKKF--EWKELAPMQTARSLFGA--TVHDGRIIVAAGVTDTGLTSSAEVYSITDN--KWAPFEAFPQERSSL 237 (315)
T ss_dssp CCCEEEEETTTT--EEEECCCCSSCCBSCEE--EEETTEEEEEEEECSSSEEEEEEEEETTTT--EEEEECCCSSCCBSC
T ss_pred cceEEEEeCCCC--eEEECCCCCCchhceEE--EEECCEEEEEeccCCCCccceEEEEECCCC--eEEECCCCCCcccce
Confidence 36889998876 68765433321 01112 2357899988754321 236889999877 68775444544444
Q ss_pred ceEEEcCcEEEE
Q 003800 229 DVALVSSDTLVT 240 (794)
Q Consensus 229 ~~~~vg~~~lv~ 240 (794)
.++..++.+++.
T Consensus 238 ~~~~~~~~l~v~ 249 (315)
T 4asc_A 238 SLVSLVGTLYAI 249 (315)
T ss_dssp EEEEETTEEEEE
T ss_pred eEEEECCEEEEE
Confidence 233335544443
No 139
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=96.52 E-value=0.52 Score=50.55 Aligned_cols=152 Identities=13% Similarity=0.153 Sum_probs=85.7
Q ss_pred CCEEEEEEc-cCCeEEEEeCCCCcEeEEEeccCccccCCccccccccccccCCeEEE-EECCEEEEEECCCCcEEEEEec
Q 003800 95 GKYVITLSS-DGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILV-SSKGCLHAVSSIDGEILWTRDF 172 (794)
Q Consensus 95 g~~~V~Vs~-~g~~v~A~d~~tG~llWe~~l~~~~~s~~~~~~~~~~~~~~~~~V~V-~~~g~l~ald~~tG~~~W~~~~ 172 (794)
|..+++.++ .++.|+.||..+|+++.+.....+.. ++.+-+ ++..++ .+++.+..++..+|+..-....
T Consensus 145 g~~la~as~~~d~~i~iwd~~~~~~~~~~~~~~~V~--~v~fsp-------dg~~l~s~s~~~~~~~~~~~~~~~~~~~~ 215 (365)
T 4h5i_A 145 GTVAAIASSKVPAIMRIIDPSDLTEKFEIETRGEVK--DLHFST-------DGKVVAYITGSSLEVISTVTGSCIARKTD 215 (365)
T ss_dssp SSCEEEEESCSSCEEEEEETTTTEEEEEEECSSCCC--EEEECT-------TSSEEEEECSSCEEEEETTTCCEEEEECC
T ss_pred CCEEEEEECCCCCEEEEeECCCCcEEEEeCCCCceE--EEEEcc-------CCceEEeccceeEEEEEeccCcceeeeec
Confidence 444444454 46899999999999999987655432 222222 444444 4677888999898887655443
Q ss_pred cCcceeeeeEEEEecCCEEEEEEecCCceeEEEEEEcCCCceeeeeeeecc---cCccCceEEE-cCcEEEEEECCCCeE
Q 003800 173 AAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAFS---GGFVGDVALV-SSDTLVTLDTTRSIL 248 (794)
Q Consensus 173 ~~~~~~~~~~v~s~~~~~vyv~~~~g~~~~~v~ald~~tG~~~w~~~v~~~---~~~s~~~~~v-g~~~lv~~d~~~g~L 248 (794)
.........+..+..+..+...+.+++....+..+|..++...-....... ..+. .+.+- .+.++++.. ..+.+
T Consensus 216 ~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~-~~~~Spdg~~lasgs-~D~~V 293 (365)
T 4h5i_A 216 FDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGIT-SMDVDMKGELAVLAS-NDNSI 293 (365)
T ss_dssp CCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEE-EEEECTTSCEEEEEE-TTSCE
T ss_pred CCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeE-eEEECCCCCceEEEc-CCCEE
Confidence 332222333332334444454555555445666667666654322211111 1111 11121 345666665 45889
Q ss_pred EEEEeecce
Q 003800 249 VTVSFKNRK 257 (794)
Q Consensus 249 ~v~~l~sg~ 257 (794)
.+-|+.+++
T Consensus 294 ~iwd~~~~~ 302 (365)
T 4h5i_A 294 ALVKLKDLS 302 (365)
T ss_dssp EEEETTTTE
T ss_pred EEEECCCCc
Confidence 999999887
No 140
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=96.49 E-value=0.22 Score=51.28 Aligned_cols=148 Identities=8% Similarity=0.040 Sum_probs=77.6
Q ss_pred CCEEEEE--------eCCCEEEEEECcCCccceEEEcC----cccceeeeeeeeCC-EEEEEEccCCeEEEEeCCCCcEe
Q 003800 53 RKRVVVS--------TEENVIASLDLRHGEIFWRHVLG----INDVVDGIDIALGK-YVITLSSDGSTLRAWNLPDGQMV 119 (794)
Q Consensus 53 ~~~Vyv~--------t~~g~l~ALn~~tG~ivWR~~l~----~~~~i~~l~~~~g~-~~V~Vs~~g~~v~A~d~~tG~ll 119 (794)
++++|++ +..+.|..+|+++|+.. +...+ ....+.++. ...+ +.+++++.++.|+.||.. |+..
T Consensus 28 ~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~-~~~~~~~~~~~~~~~~i~-~~~~~g~l~v~~~~~~l~~~d~~-g~~~ 104 (314)
T 1pjx_A 28 NGDFYIVAPEVEVNGKPAGEILRIDLKTGKKT-VICKPEVNGYGGIPAGCQ-CDRDANQLFVADMRLGLLVVQTD-GTFE 104 (314)
T ss_dssp TSCEEEEETTCEETTEECCEEEEECTTTCCEE-EEECCEETTEECCEEEEE-ECSSSSEEEEEETTTEEEEEETT-SCEE
T ss_pred CCCEEEEEeccccCCCCCCEEEEEeCCCCcEE-EEEecccCCCCCCCceEE-EecCCCcEEEEECCCCEEEEeCC-CCEE
Confidence 6678888 67899999999999853 11221 111222332 2333 455555544589999998 8865
Q ss_pred EE-EeccCccccCCccccccccccccCCeEEEEE--C---------------CEEEEEECCCCcEEEEEeccCcceeeee
Q 003800 120 WE-SFLRGSKHSKPLLLVPTNLKVDKDSLILVSS--K---------------GCLHAVSSIDGEILWTRDFAAESVEVQQ 181 (794)
Q Consensus 120 We-~~l~~~~~s~~~~~~~~~~~~~~~~~V~V~~--~---------------g~l~ald~~tG~~~W~~~~~~~~~~~~~ 181 (794)
.- ........ . ..+.....+.++.+++.. + +.|+++|.. |+......... .+..
T Consensus 105 ~~~~~~~~~~~-~---~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~---~~~~ 176 (314)
T 1pjx_A 105 EIAKKDSEGRR-M---QGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQ---FPNG 176 (314)
T ss_dssp ECCSBCTTSCB-C---BCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEES---SEEE
T ss_pred EEEeccCCCcc-c---cCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccCCC---Ccce
Confidence 33 22111100 0 000011334456677764 2 689999876 77654322111 1222
Q ss_pred EEEEe---cCC-EEEEEEecCCceeEEEEEEcC-CCce
Q 003800 182 VIQLD---ESD-QIYVVGYAGSSQFHAYQINAM-NGEL 214 (794)
Q Consensus 182 ~v~s~---~~~-~vyv~~~~g~~~~~v~ald~~-tG~~ 214 (794)
+.... .++ .+|+.....+ .+..+|.. +|+.
T Consensus 177 i~~~~~~d~dg~~l~v~~~~~~---~i~~~~~~~~g~~ 211 (314)
T 1pjx_A 177 IAVRHMNDGRPYQLIVAETPTK---KLWSYDIKGPAKI 211 (314)
T ss_dssp EEEEECTTSCEEEEEEEETTTT---EEEEEEEEETTEE
T ss_pred EEEecccCCCCCEEEEEECCCC---eEEEEECCCCCcc
Confidence 32220 233 5776554332 67777765 5654
No 141
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=96.43 E-value=1.2 Score=46.89 Aligned_cols=162 Identities=14% Similarity=0.145 Sum_probs=91.7
Q ss_pred CCEEEEEeC-CCEEEEEECcCCc--cceEEEcCc-----cc---ceeeeeeeeCCEEEEEEc--cCCeEEEEeCCCCcEe
Q 003800 53 RKRVVVSTE-ENVIASLDLRHGE--IFWRHVLGI-----ND---VVDGIDIALGKYVITLSS--DGSTLRAWNLPDGQMV 119 (794)
Q Consensus 53 ~~~Vyv~t~-~g~l~ALn~~tG~--ivWR~~l~~-----~~---~i~~l~~~~g~~~V~Vs~--~g~~v~A~d~~tG~ll 119 (794)
++++|++.. .+.|..+|+ +|+ .++...-.. .. ...++.+...++.++|+. .++.|+.|| .+|+.+
T Consensus 101 ~g~l~v~d~~~~~v~~~~~-~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~ 178 (329)
T 3fvz_A 101 DGNYWVTDVALHQVFKLDP-HSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFV 178 (329)
T ss_dssp TSCEEEEETTTTEEEEECT-TCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEE
T ss_pred CCCEEEEECCCCEEEEEeC-CCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEE
Confidence 566888765 689999997 566 444432100 00 122332222145565554 367999999 689999
Q ss_pred EEEeccCcccc--CCccccccccccccC-CeEEEEE--CCEEEEEECCCCcEEEEEeccCcceeeeeEEEEecCCEEEEE
Q 003800 120 WESFLRGSKHS--KPLLLVPTNLKVDKD-SLILVSS--KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVV 194 (794)
Q Consensus 120 We~~l~~~~~s--~~~~~~~~~~~~~~~-~~V~V~~--~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~s~~~~~vyv~ 194 (794)
+.....+.... ......|..++.+.+ +.++|.. +++|..+|..+|+.+.+...+.....+..+. ..++.+|+.
T Consensus 179 ~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~--~~pg~~~~~ 256 (329)
T 3fvz_A 179 TQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAIS--YIPGFLFAV 256 (329)
T ss_dssp EEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEE--EETTEEEEE
T ss_pred EEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceee--ecCCEEEEe
Confidence 88754332100 000000111234434 7888874 8899999999999998886543222233332 233555543
Q ss_pred Eec----CCceeEEEEEEcCCCceeeee
Q 003800 195 GYA----GSSQFHAYQINAMNGELLNHE 218 (794)
Q Consensus 195 ~~~----g~~~~~v~ald~~tG~~~w~~ 218 (794)
... +.....+..+|..+|+.+...
T Consensus 257 ~g~~~v~~~~~~~v~~~~~~~g~~~~~~ 284 (329)
T 3fvz_A 257 NGKPYFGDQEPVQGFVMNFSSGEIIDVF 284 (329)
T ss_dssp ECCCCTTCSCCCCEEEEETTTCCEEEEE
T ss_pred CCCEEeccCCCcEEEEEEcCCCeEEEEE
Confidence 211 112236888999999988654
No 142
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=96.42 E-value=0.089 Score=54.81 Aligned_cols=186 Identities=11% Similarity=-0.004 Sum_probs=101.4
Q ss_pred CCC-EEEEEeCCCEEEEEEC-cCCccceEEEcCc---ccceeeeeeeeCCEEEEEEccCCeEEEEeCCC---------Cc
Q 003800 52 GRK-RVVVSTEENVIASLDL-RHGEIFWRHVLGI---NDVVDGIDIALGKYVITLSSDGSTLRAWNLPD---------GQ 117 (794)
Q Consensus 52 ~~~-~Vyv~t~~g~l~ALn~-~tG~ivWR~~l~~---~~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~t---------G~ 117 (794)
++. .+++++.+|.|...|. ++|+. +.+.. ...+..+.... +..++.++.++.++.||..+ ++
T Consensus 67 ~~~~~l~~~~~dg~i~~wd~~~~~~~---~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~ 142 (342)
T 1yfq_A 67 NTDLQIYVGTVQGEILKVDLIGSPSF---QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNL 142 (342)
T ss_dssp SSSEEEEEEETTSCEEEECSSSSSSE---EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEES
T ss_pred CCCcEEEEEcCCCeEEEEEeccCCce---EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCC
Confidence 466 7999999999999999 88876 33332 23344442223 44555466668999999988 77
Q ss_pred EeEEEeccCccccCCccccccccccccCCeEEEE-ECCEEEEEECCC-CcEEEEEeccCcceeeeeEEEEe-cCCEEEEE
Q 003800 118 MVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVS-SKGCLHAVSSID-GEILWTRDFAAESVEVQQVIQLD-ESDQIYVV 194 (794)
Q Consensus 118 llWe~~l~~~~~s~~~~~~~~~~~~~~~~~V~V~-~~g~l~ald~~t-G~~~W~~~~~~~~~~~~~~v~s~-~~~~vyv~ 194 (794)
+++......... .+ ... .+.+++. .++.+..+|..+ +.................+.... .+..+++.
T Consensus 143 ~~~~~~~~~~v~-----~~----~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~ 212 (342)
T 1yfq_A 143 NSNNTKVKNKIF-----TM----DTN-SSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACS 212 (342)
T ss_dssp CSSSSSSCCCEE-----EE----EEC-SSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEE
T ss_pred eeeEEeeCCceE-----EE----Eec-CCcEEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEE
Confidence 776655322211 11 122 2335554 488999999988 76433222211111122232222 33444443
Q ss_pred EecCCceeEEEEEEcCCC------ceeeeeeeecc--------cCccCceEEE-cCcEEEEEECCCCeEEEEEeecce
Q 003800 195 GYAGSSQFHAYQINAMNG------ELLNHETAAFS--------GGFVGDVALV-SSDTLVTLDTTRSILVTVSFKNRK 257 (794)
Q Consensus 195 ~~~g~~~~~v~ald~~tG------~~~w~~~v~~~--------~~~s~~~~~v-g~~~lv~~d~~~g~L~v~~l~sg~ 257 (794)
+.+| .+...|..++ +.......... ..+. .+.+- .+..+++.. .+|.+++.|+.+++
T Consensus 213 ~~dg----~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~s~~~~~l~~~~-~dg~i~vwd~~~~~ 284 (342)
T 1yfq_A 213 SIDG----RVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVN-SIEFSPRHKFLYTAG-SDGIISCWNLQTRK 284 (342)
T ss_dssp ETTS----EEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEE-EEEECTTTCCEEEEE-TTSCEEEEETTTTE
T ss_pred ecCC----cEEEEEEcCCCcccccccceeeecccccccccccceeEE-EEEEcCCCCEEEEec-CCceEEEEcCccHh
Confidence 3333 5666666665 55444432111 0111 11111 334565655 46889999998877
No 143
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=96.30 E-value=0.07 Score=57.34 Aligned_cols=199 Identities=6% Similarity=0.037 Sum_probs=104.6
Q ss_pred CCCEEEEEeCCCEEEEEECcC---CccceEEEcCcccceeeeeeee-CCEEEEEEccCCeEEEEeCCCCc------EeEE
Q 003800 52 GRKRVVVSTEENVIASLDLRH---GEIFWRHVLGINDVVDGIDIAL-GKYVITLSSDGSTLRAWNLPDGQ------MVWE 121 (794)
Q Consensus 52 ~~~~Vyv~t~~g~l~ALn~~t---G~ivWR~~l~~~~~i~~l~~~~-g~~~V~Vs~~g~~v~A~d~~tG~------llWe 121 (794)
++..+++++.+|.|...|..+ |...-+........+..+.... ++..++.++.++.|+.||..+++ ....
T Consensus 78 ~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~ 157 (416)
T 2pm9_A 78 NNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLT 157 (416)
T ss_dssp SSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBC
T ss_pred CCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccc
Confidence 456688889999999999988 3322222222223344442222 24555556667899999999997 4433
Q ss_pred EeccCccccCCccccccccccccC-CeEEE-E-ECCEEEEEECCCCcEEEEEeccCc----ceeeeeEEEEecCCEEEEE
Q 003800 122 SFLRGSKHSKPLLLVPTNLKVDKD-SLILV-S-SKGCLHAVSSIDGEILWTRDFAAE----SVEVQQVIQLDESDQIYVV 194 (794)
Q Consensus 122 ~~l~~~~~s~~~~~~~~~~~~~~~-~~V~V-~-~~g~l~ald~~tG~~~W~~~~~~~----~~~~~~~v~s~~~~~vyv~ 194 (794)
........ .....+ ....+ +.+++ . .+|.+...|..+|+...+...... ......+..+..+..+++.
T Consensus 158 ~~~~~~~~-~~v~~~----~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 232 (416)
T 2pm9_A 158 PGQSMSSV-DEVISL----AWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVAT 232 (416)
T ss_dssp CCCSCCSS-CCCCEE----EECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEE
T ss_pred cccccCCC-CCeeEE----EeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEE
Confidence 21110000 011111 11112 33444 3 489999999999999888876521 1112223222223334444
Q ss_pred EecCCceeEEEEEEcCCCc-eeeeeeeecccCccCceEEE--cCcEEEEEECCCCeEEEEEeecce
Q 003800 195 GYAGSSQFHAYQINAMNGE-LLNHETAAFSGGFVGDVALV--SSDTLVTLDTTRSILVTVSFKNRK 257 (794)
Q Consensus 195 ~~~g~~~~~v~ald~~tG~-~~w~~~v~~~~~~s~~~~~v--g~~~lv~~d~~~g~L~v~~l~sg~ 257 (794)
+..++....+..+|..+++ ++..........+.. +.+. ++.++++.. ..+.+.+-|+.+++
T Consensus 233 ~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~-~~~s~~~~~~l~s~~-~dg~v~~wd~~~~~ 296 (416)
T 2pm9_A 233 ATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILS-LDWCHQDEHLLLSSG-RDNTVLLWNPESAE 296 (416)
T ss_dssp EECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEE-EEECSSCSSCEEEEE-SSSEEEEECSSSCC
T ss_pred EECCCCCceEEEEeCCCCCCCcEEeecCccCceeE-EEeCCCCCCeEEEEe-CCCCEEEeeCCCCc
Confidence 4333211246777888874 333321011111211 2221 344566665 36889999998877
No 144
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=96.26 E-value=0.27 Score=52.94 Aligned_cols=190 Identities=14% Similarity=0.130 Sum_probs=104.9
Q ss_pred CCEEEEEeCCCEEEEEECcCCccceEEEcCcc----cceeeeeee-eCCEEEEEEccCCeEEEEeCC-CCcEeEEEeccC
Q 003800 53 RKRVVVSTEENVIASLDLRHGEIFWRHVLGIN----DVVDGIDIA-LGKYVITLSSDGSTLRAWNLP-DGQMVWESFLRG 126 (794)
Q Consensus 53 ~~~Vyv~t~~g~l~ALn~~tG~ivWR~~l~~~----~~i~~l~~~-~g~~~V~Vs~~g~~v~A~d~~-tG~llWe~~l~~ 126 (794)
+.+++.++.++.|...|.++|+.+-....... ..+..+... .++..++.++.++.|+.||.. +++.+-......
T Consensus 170 ~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~ 249 (380)
T 3iz6_a 170 ETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHE 249 (380)
T ss_dssp SSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCS
T ss_pred CCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcC
Confidence 44699999999999999999998765532211 122222111 234455545667899999997 456655554443
Q ss_pred ccccCCccccccccccccCCeEEE-E-ECCEEEEEECCCCcEEEEEeccCcce-----eeeeEEEEecCCEEEEEEecCC
Q 003800 127 SKHSKPLLLVPTNLKVDKDSLILV-S-SKGCLHAVSSIDGEILWTRDFAAESV-----EVQQVIQLDESDQIYVVGYAGS 199 (794)
Q Consensus 127 ~~~s~~~~~~~~~~~~~~~~~V~V-~-~~g~l~ald~~tG~~~W~~~~~~~~~-----~~~~~v~s~~~~~vyv~~~~g~ 199 (794)
... ..+.+.+ ++..++ . .||.+...|..+|+.+-.+....... ....+..+..+..++..+.+|
T Consensus 250 ~~v-~~v~~~p-------~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg- 320 (380)
T 3iz6_a 250 GDI-NSVKFFP-------DGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNG- 320 (380)
T ss_dssp SCC-CEEEECT-------TSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTS-
T ss_pred CCe-EEEEEec-------CCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCC-
Confidence 322 1222222 344444 4 38999999999999887765432110 011222223344444433333
Q ss_pred ceeEEEEEEcCCCceeeeeeeecccCccC--ceEEE--cCcEEEEEECCCCeEEEEEeecc
Q 003800 200 SQFHAYQINAMNGELLNHETAAFSGGFVG--DVALV--SSDTLVTLDTTRSILVTVSFKNR 256 (794)
Q Consensus 200 ~~~~v~ald~~tG~~~w~~~v~~~~~~s~--~~~~v--g~~~lv~~d~~~g~L~v~~l~sg 256 (794)
.+..+|..+|+.+....... .+-.+ .++-. .+..++... ..+.+.+-++..+
T Consensus 321 ---~i~vwd~~~~~~~~~~~~~~-~~h~~~v~~l~~s~dg~~l~sgs-~D~~i~iW~~~~~ 376 (380)
T 3iz6_a 321 ---DCYVWDTLLAEMVLNLGTLQ-NSHEGRISCLGLSSDGSALCTGS-WDKNLKIWAFSGH 376 (380)
T ss_dssp ---CEEEEETTTCCEEEEECCSC-SSCCCCCCEEEECSSSSEEEEEC-TTSCEEEEECCSS
T ss_pred ---CEEEEECCCCceEEEEeccc-CCCCCceEEEEECCCCCEEEEee-CCCCEEEEecCCC
Confidence 68889999998776542111 11111 22222 334555444 4567777666544
No 145
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=96.24 E-value=0.51 Score=49.41 Aligned_cols=199 Identities=7% Similarity=-0.034 Sum_probs=101.0
Q ss_pred CCEEEEEeCCCEEEEEECcCCc--cceEEEcCcccceeeeeeeeC--CEEEEEEccCCeEEEEeCCCCcEe--EEEeccC
Q 003800 53 RKRVVVSTEENVIASLDLRHGE--IFWRHVLGINDVVDGIDIALG--KYVITLSSDGSTLRAWNLPDGQMV--WESFLRG 126 (794)
Q Consensus 53 ~~~Vyv~t~~g~l~ALn~~tG~--ivWR~~l~~~~~i~~l~~~~g--~~~V~Vs~~g~~v~A~d~~tG~ll--We~~l~~ 126 (794)
+..+++++.+|.|...|.++|+ .+..... ....+..+..... +..++.++.++.++.||..++... .......
T Consensus 69 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~ 147 (379)
T 3jrp_A 69 GTILASCSYDGKVLIWKEENGRWSQIAVHAV-HSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHA 147 (379)
T ss_dssp CSEEEEEETTSCEEEEEEETTEEEEEEEECC-CSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCT
T ss_pred CCEEEEeccCCEEEEEEcCCCceeEeeeecC-CCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCC
Confidence 5679999999999999999997 3333221 1223443322222 445555666689999999988432 2222222
Q ss_pred ccccCCcccccccc------ccc-cCCeEEEEE-CCEEEEEECCCCcEEEEEec--cCcceeeeeEEEEecC--CEEEEE
Q 003800 127 SKHSKPLLLVPTNL------KVD-KDSLILVSS-KGCLHAVSSIDGEILWTRDF--AAESVEVQQVIQLDES--DQIYVV 194 (794)
Q Consensus 127 ~~~s~~~~~~~~~~------~~~-~~~~V~V~~-~g~l~ald~~tG~~~W~~~~--~~~~~~~~~~v~s~~~--~~vyv~ 194 (794)
... ..+.+.+... ... .+..+++.+ +|.++..|..++...|.... .........+..+..+ +..++.
T Consensus 148 ~~v-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s 226 (379)
T 3jrp_A 148 IGV-NSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLAS 226 (379)
T ss_dssp TCE-EEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEE
T ss_pred Cce-EEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEE
Confidence 111 0111111000 000 123344443 88899998888876654332 1111112223222221 444444
Q ss_pred EecCCceeEEEEEEcCCCceeeeeeeecccCccCc---eEE-EcCcEEEEEECCCCeEEEEEeecce
Q 003800 195 GYAGSSQFHAYQINAMNGELLNHETAAFSGGFVGD---VAL-VSSDTLVTLDTTRSILVTVSFKNRK 257 (794)
Q Consensus 195 ~~~g~~~~~v~ald~~tG~~~w~~~v~~~~~~s~~---~~~-vg~~~lv~~d~~~g~L~v~~l~sg~ 257 (794)
+...+ .+..+|..+|+..+...+......... +.+ ..+..+++... .|.+++-++..+.
T Consensus 227 ~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-dg~i~iw~~~~~~ 289 (379)
T 3jrp_A 227 VSQDR---TCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGG-DNKVTLWKENLEG 289 (379)
T ss_dssp EETTS---CEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEES-SSSEEEEEEEETT
T ss_pred EeCCC---EEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecC-CCcEEEEeCCCCC
Confidence 43322 677788888875554443222112221 112 13345555553 6888888888643
No 146
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=96.22 E-value=1.3 Score=45.42 Aligned_cols=191 Identities=13% Similarity=0.141 Sum_probs=97.6
Q ss_pred CCCEEEEEeCC-CEEEEEECc--CCccceEEEcCcccceeeeeeeeCCEEEEEEc-cCCeEEEEeCCCCc---EeEEEec
Q 003800 52 GRKRVVVSTEE-NVIASLDLR--HGEIFWRHVLGINDVVDGIDIALGKYVITLSS-DGSTLRAWNLPDGQ---MVWESFL 124 (794)
Q Consensus 52 ~~~~Vyv~t~~-g~l~ALn~~--tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~-~g~~v~A~d~~tG~---llWe~~l 124 (794)
+++.+|+++.. +.|...+.. +|+..=...+.....+..+....++..+++++ .++.++.||..+|. .......
T Consensus 48 dg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~ 127 (343)
T 1ri6_A 48 DKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG 127 (343)
T ss_dssp TSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECC
T ss_pred CCCEEEEeecCCCeEEEEEecCCCCceeeccccccCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccC
Confidence 45668888876 888775554 77643222232222233332233444455444 46789999995554 3333332
Q ss_pred cCccccCCccccccccccccCCeEEEEE--CCEEEEEECCC-CcEEEE----EeccCcceeeeeEEEEecCCEEEEEEec
Q 003800 125 RGSKHSKPLLLVPTNLKVDKDSLILVSS--KGCLHAVSSID-GEILWT----RDFAAESVEVQQVIQLDESDQIYVVGYA 197 (794)
Q Consensus 125 ~~~~~s~~~~~~~~~~~~~~~~~V~V~~--~g~l~ald~~t-G~~~W~----~~~~~~~~~~~~~v~s~~~~~vyv~~~~ 197 (794)
.... ..+.+. .+ ++.+++.. ++.+..+|..+ |+..-. ...+... .+..+..+..+..+|+.+..
T Consensus 128 ~~~~--~~~~~s-----~d-g~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~pdg~~l~~~~~~ 198 (343)
T 1ri6_A 128 LDGC--HSANIS-----PD-NRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGA-GPRHMVFHPNEQYAYCVNEL 198 (343)
T ss_dssp CTTB--CCCEEC-----TT-SSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTC-CEEEEEECTTSSEEEEEETT
T ss_pred CCCc--eEEEEC-----CC-CCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCC-CcceEEECCCCCEEEEEeCC
Confidence 2211 111111 12 34566653 78999999887 865422 2222211 23334333344457766533
Q ss_pred CCceeEEEEEEc--CCCceeeeeeee-cccCccC-----ceEEE-cCcEEEEEECCCCeEEEEEee
Q 003800 198 GSSQFHAYQINA--MNGELLNHETAA-FSGGFVG-----DVALV-SSDTLVTLDTTRSILVTVSFK 254 (794)
Q Consensus 198 g~~~~~v~ald~--~tG~~~w~~~v~-~~~~~s~-----~~~~v-g~~~lv~~d~~~g~L~v~~l~ 254 (794)
.+ .+..+|. .+|+......+. .+.+..+ .+.+- .+..+++.+...+.+.+.++.
T Consensus 199 ~~---~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~ 261 (343)
T 1ri6_A 199 NS---SVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVS 261 (343)
T ss_dssp TT---EEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred CC---EEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEc
Confidence 22 5666666 567764333332 2322111 12222 234566666667889898887
No 147
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=96.21 E-value=0.37 Score=52.81 Aligned_cols=189 Identities=15% Similarity=0.093 Sum_probs=95.7
Q ss_pred cCCCEEEEEeCCC---EEEEEECcCCccceEEEcCcccceeeeeee-eCCEEEEEEcc--CCeEEEEeCCCCcEeEEEec
Q 003800 51 TGRKRVVVSTEEN---VIASLDLRHGEIFWRHVLGINDVVDGIDIA-LGKYVITLSSD--GSTLRAWNLPDGQMVWESFL 124 (794)
Q Consensus 51 ~~~~~Vyv~t~~g---~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~-~g~~~V~Vs~~--g~~v~A~d~~tG~llWe~~l 124 (794)
++++.|+.++.++ .|...|.++|+.. +.......+..+... .|+.+++.++. ...|+.||..+|+.. +...
T Consensus 188 pdg~~la~~s~~~~~~~i~~~d~~tg~~~--~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~-~l~~ 264 (415)
T 2hqs_A 188 PDGSKLAYVTFESGRSALVIQTLANGAVR--QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR-QVTD 264 (415)
T ss_dssp TTSSEEEEEECTTSSCEEEEEETTTCCEE--EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-ECCC
T ss_pred CCCCEEEEEEecCCCcEEEEEECCCCcEE--EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEE-eCcC
Confidence 3466677777664 9999999999874 222222223333222 34445555432 246999999999863 2111
Q ss_pred cCccccCCccccccccccccCCeEEEEE--CC--EEEEEECCCCcEEEEEeccCcceeeeeEEEEecCCEEEEEEecCCc
Q 003800 125 RGSKHSKPLLLVPTNLKVDKDSLILVSS--KG--CLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSS 200 (794)
Q Consensus 125 ~~~~~s~~~~~~~~~~~~~~~~~V~V~~--~g--~l~ald~~tG~~~W~~~~~~~~~~~~~~v~s~~~~~vyv~~~~g~~ 200 (794)
..... ..+.+. .+ +..+++.+ ++ .|+.+|..+|+..-.. ... . ....+..+.++..+++.+..++
T Consensus 265 ~~~~~-~~~~~s-----pd-g~~l~~~s~~~g~~~i~~~d~~~~~~~~l~-~~~-~-~~~~~~~spdG~~l~~~~~~~g- 333 (415)
T 2hqs_A 265 GRSNN-TEPTWF-----PD-SQNLAFTSDQAGRPQVYKVNINGGAPQRIT-WEG-S-QNQDADVSSDGKFMVMVSSNGG- 333 (415)
T ss_dssp CSSCE-EEEEEC-----TT-SSEEEEEECTTSSCEEEEEETTSSCCEECC-CSS-S-EEEEEEECTTSSEEEEEEECSS-
T ss_pred CCCcc-cceEEC-----CC-CCEEEEEECCCCCcEEEEEECCCCCEEEEe-cCC-C-cccCeEECCCCCEEEEEECcCC-
Confidence 11111 111111 12 23344444 23 7899998888743211 111 1 1222322334555665554422
Q ss_pred eeEEEEEEcCCCceeeeeeeecccCccCceEEE-cCcEEEEEECCCC--eEEEEEeecce
Q 003800 201 QFHAYQINAMNGELLNHETAAFSGGFVGDVALV-SSDTLVTLDTTRS--ILVTVSFKNRK 257 (794)
Q Consensus 201 ~~~v~ald~~tG~~~w~~~v~~~~~~s~~~~~v-g~~~lv~~d~~~g--~L~v~~l~sg~ 257 (794)
...+..+|+.+|+... +...... ..+.+- .+..+++.....+ .|+..++..+.
T Consensus 334 ~~~i~~~d~~~~~~~~---l~~~~~~-~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~ 389 (415)
T 2hqs_A 334 QQHIAKQDLATGGVQV---LSSTFLD-ETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRF 389 (415)
T ss_dssp CEEEEEEETTTCCEEE---CCCSSSC-EEEEECTTSSEEEEEEEETTEEEEEEEETTSCC
T ss_pred ceEEEEEECCCCCEEE---ecCCCCc-CCeEEcCCCCEEEEEEcCCCccEEEEEECCCCc
Confidence 3478899999998732 2111111 122222 3344444433333 68888876554
No 148
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=96.18 E-value=0.16 Score=51.23 Aligned_cols=145 Identities=10% Similarity=0.057 Sum_probs=78.8
Q ss_pred CCEEEEEeCCCEEEEEECcCCccceEEEcCcccceeeeeeeeCCEEEEEE-ccCCeEEEEeCCCCcEeEEEeccCccccC
Q 003800 53 RKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLS-SDGSTLRAWNLPDGQMVWESFLRGSKHSK 131 (794)
Q Consensus 53 ~~~Vyv~t~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs-~~g~~v~A~d~~tG~llWe~~l~~~~~s~ 131 (794)
++++|+++..+.|..+|+.++ ..+...........++. ...++.++++ ..++.|+.||..++...+.. ... ...
T Consensus 77 ~g~l~v~~~~~~i~~~d~~~~-~~~~~~~~~~~~p~~i~-~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~--~~~-~~~ 151 (270)
T 1rwi_B 77 AGTVYVTDFNNRVVTLAAGSN-NQTVLPFDGLNYPEGLA-VDTQGAVYVADRGNNRVVKLAAGSKTQTVLP--FTG-LND 151 (270)
T ss_dssp TCCEEEEETTTEEEEECTTCS-CCEECCCCSCSSEEEEE-ECTTCCEEEEEGGGTEEEEECTTCCSCEECC--CCS-CCS
T ss_pred CCCEEEEcCCCEEEEEeCCCc-eEeeeecCCcCCCcceE-ECCCCCEEEEECCCCEEEEEECCCceeEeec--ccc-CCC
Confidence 566999988889999998654 44443332211223342 2223446555 34568999987655443321 111 100
Q ss_pred CccccccccccccCCeEEEEE--CCEEEEEECCCCcEEEEEeccCcceeeeeEEEEecCCEEEEEEecCCceeEEEEEEc
Q 003800 132 PLLLVPTNLKVDKDSLILVSS--KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINA 209 (794)
Q Consensus 132 ~~~~~~~~~~~~~~~~V~V~~--~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~s~~~~~vyv~~~~g~~~~~v~ald~ 209 (794)
+. .+..+.++.+++.. ++.|+.+|..++...... .... ..+..+. ...++.+|+....++ .+..+|+
T Consensus 152 p~-----~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~-~~~~-~~p~~i~-~d~~g~l~v~~~~~~---~v~~~~~ 220 (270)
T 1rwi_B 152 PD-----GVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLP-FTDI-TAPWGIA-VDEAGTVYVTEHNTN---QVVKLLA 220 (270)
T ss_dssp CC-----CEEECTTCCEEEEEGGGTEEEEECTTTCCEEECC-CSSC-CSEEEEE-ECTTCCEEEEETTTS---CEEEECT
T ss_pred ce-----eEEEeCCCCEEEEECCCCEEEEEecCCCceEeec-ccCC-CCceEEE-ECCCCCEEEEECCCC---cEEEEcC
Confidence 10 11233356677764 689999998877654321 1111 1233443 234568898665433 6888888
Q ss_pred CCCc
Q 003800 210 MNGE 213 (794)
Q Consensus 210 ~tG~ 213 (794)
.++.
T Consensus 221 ~~~~ 224 (270)
T 1rwi_B 221 GSTT 224 (270)
T ss_dssp TCSC
T ss_pred CCCc
Confidence 6543
No 149
>3hx6_A Type 4 fimbrial biogenesis protein PILY1; beta propeller, pilus protein, cell adhesion; 2.10A {Pseudomonas aeruginosa}
Probab=96.18 E-value=0.11 Score=59.34 Aligned_cols=155 Identities=14% Similarity=0.133 Sum_probs=89.9
Q ss_pred CEEEEEEccCCeEEEEeCCCCcEeEEEecc----------Ccccc--------CCccccccccccccC---CeEEEEE--
Q 003800 96 KYVITLSSDGSTLRAWNLPDGQMVWESFLR----------GSKHS--------KPLLLVPTNLKVDKD---SLILVSS-- 152 (794)
Q Consensus 96 ~~~V~Vs~~g~~v~A~d~~tG~llWe~~l~----------~~~~s--------~~~~~~~~~~~~~~~---~~V~V~~-- 152 (794)
..+|+++++++.|+|+|+. |+++|-+-=. .+... ...+.+. .+..+ +.+++..
T Consensus 85 ~~~VyvGaNDGmLHaF~a~-G~E~wAfiP~~~l~~L~~l~~~~y~~~~h~Y~VDG~p~~~---Dv~~~g~wrtvLvggmg 160 (570)
T 3hx6_A 85 APRVYVGANDGMLHGFDTD-GNETFAFIPSAVFEKMHKLTARGYQGGAHQFYVDGSPVVA---DAFFGGAWHTVLIGSLR 160 (570)
T ss_dssp CCEEEEECSSSCEEECCSS-CCCCEEECCHHHHHHCC-------CCHHHHHHHHCCCEEE---EEEETTEEEEEEEEECT
T ss_pred ccEEEEECCCceEEEECCC-CcEEEEECCHHHHHHHHHHhccCccccCcceecCCCCEEE---EEEeCCcceEEEEEecC
Confidence 4688889988999999998 9999997421 11100 0011111 01001 2334432
Q ss_pred --CCEEEEEECCC---CcEEEEEeccC-cce----eeeeEEEEecCCEEEEEEecC----CceeEEEEEEcCCCceeeee
Q 003800 153 --KGCLHAVSSID---GEILWTRDFAA-ESV----EVQQVIQLDESDQIYVVGYAG----SSQFHAYQINAMNGELLNHE 218 (794)
Q Consensus 153 --~g~l~ald~~t---G~~~W~~~~~~-~~~----~~~~~v~s~~~~~vyv~~~~g----~~~~~v~ald~~tG~~~w~~ 218 (794)
+..++|||..+ .+++|++.... +.+ ...++.. ..+++-+++-..| .....|+.+|++||+++|+.
T Consensus 161 ~GG~~~yALDVT~P~~p~~LWe~~~~~~~~LG~t~s~P~I~~-~~~g~w~~vfG~GY~~~~~~~~Lyv~d~~tG~li~~i 239 (570)
T 3hx6_A 161 AGGKGLFALDVTDPANIKLLWEIGVDQEPDLGYSFPKPTVAR-LHNGKWAVVTGNGYSSMNDKAALLIIDMETGAITRKL 239 (570)
T ss_dssp TSCSEEEEEECSSGGGCEEEEEEETTTCTTCCBCCSCCEEEE-CTTSSEEEEEECCBSCTTCCEEEEEEETTTCCEEEEE
T ss_pred CCCcEEEEEECCCCCCCceeEEECCCCccccCccccCCEEEE-ecCCCEEEEEccccCCCCCccEEEEEECCCCceEEEE
Confidence 55899999876 78999998432 111 1111221 2233322221122 12468999999999999988
Q ss_pred eeecc----cCccCceEEEc---C---cEEEEEECCCCeEEEEEeecce
Q 003800 219 TAAFS----GGFVGDVALVS---S---DTLVTLDTTRSILVTVSFKNRK 257 (794)
Q Consensus 219 ~v~~~----~~~s~~~~~vg---~---~~lv~~d~~~g~L~v~~l~sg~ 257 (794)
.+... .+++. +.++. + ..+++.|. .|+++.+||.+..
T Consensus 240 ~~~~~~~~~~Gls~-~~~~D~d~Dg~~D~~YaGDl-~GnlWRfDl~~~~ 286 (570)
T 3hx6_A 240 EVTGRTGVPNGLSS-PRLADNNSDGVADYAYAGDL-QGNLWRFDLIAGK 286 (570)
T ss_dssp EECCSTTSCCCEEE-EEEECTTSSSBCCEEEEEET-TSEEEEEECSCSS
T ss_pred ecCCCCccCCcccc-ceEEecCCCCceeEEEEEeC-CCcEEEEEcCCCC
Confidence 65432 23333 33342 1 36778885 6999999998754
No 150
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=96.16 E-value=0.45 Score=49.31 Aligned_cols=183 Identities=7% Similarity=0.006 Sum_probs=101.5
Q ss_pred CCCEEEEEeCCCEEEEEECcCCc----cceEEEcCcccceeeeeeeeCCE-EEEEEccCCeEEEEeC-CCCcEeEEEec-
Q 003800 52 GRKRVVVSTEENVIASLDLRHGE----IFWRHVLGINDVVDGIDIALGKY-VITLSSDGSTLRAWNL-PDGQMVWESFL- 124 (794)
Q Consensus 52 ~~~~Vyv~t~~g~l~ALn~~tG~----ivWR~~l~~~~~i~~l~~~~g~~-~V~Vs~~g~~v~A~d~-~tG~llWe~~l- 124 (794)
+++.+++++.+|.|...|..+|+ ..... .....+..+.....+. .++.++.++.|+.||. .+|+.. ....
T Consensus 22 ~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~-~~~~~ 98 (342)
T 1yfq_A 22 SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSL--RYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQ-ALTNN 98 (342)
T ss_dssp GGTEEEEEETTSEEEEEEEETTTTEEEEEEEE--ECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEE-ECBSC
T ss_pred CCCEEEEEcCCCeEEEEEeCCCCccccceeee--ecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCceE-ecccc
Confidence 35678999999999999999888 44333 2223344443333445 5655666679999999 888762 2221
Q ss_pred -cCccccCCccccccccccccCCeEEEEE-CCEEEEEECCC---------CcEEEEEeccCcceeeeeEEEEecCCEEEE
Q 003800 125 -RGSKHSKPLLLVPTNLKVDKDSLILVSS-KGCLHAVSSID---------GEILWTRDFAAESVEVQQVIQLDESDQIYV 193 (794)
Q Consensus 125 -~~~~~s~~~~~~~~~~~~~~~~~V~V~~-~g~l~ald~~t---------G~~~W~~~~~~~~~~~~~~v~s~~~~~vyv 193 (794)
... ....+ ....++.++..+ ++.+...|..+ ++.+.+...+.. +..+ ...++.+++
T Consensus 99 ~~~~----~v~~l----~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~---v~~~--~~~~~~l~~ 165 (342)
T 1yfq_A 99 EANL----GICRI----CKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNK---IFTM--DTNSSRLIV 165 (342)
T ss_dssp CCCS----CEEEE----EEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCC---EEEE--EECSSEEEE
T ss_pred CCCC----ceEEE----EeCCCCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCc---eEEE--EecCCcEEE
Confidence 111 11111 111134444443 88888888776 665555442221 2222 234555555
Q ss_pred EEecCCceeEEEEEEcCC-Cceeeeeeee-cccCccCceEEE--cCcEEEEEECCCCeEEEEEeecc
Q 003800 194 VGYAGSSQFHAYQINAMN-GELLNHETAA-FSGGFVGDVALV--SSDTLVTLDTTRSILVTVSFKNR 256 (794)
Q Consensus 194 ~~~~g~~~~~v~ald~~t-G~~~w~~~v~-~~~~~s~~~~~v--g~~~lv~~d~~~g~L~v~~l~sg 256 (794)
.+.+| .+..+|..+ +......... ....+. .+.+. .++.+++.. ..|.+.+.++..+
T Consensus 166 ~~~d~----~i~i~d~~~~~~~~~~~~~~~~~~~i~-~i~~~~~~~~~l~~~~-~dg~i~i~~~~~~ 226 (342)
T 1yfq_A 166 GMNNS----QVQWFRLPLCEDDNGTIEESGLKYQIR-DVALLPKEQEGYACSS-IDGRVAVEFFDDQ 226 (342)
T ss_dssp EESTT----EEEEEESSCCTTCCCEEEECSCSSCEE-EEEECSGGGCEEEEEE-TTSEEEEEECCTT
T ss_pred EeCCC----eEEEEECCccccccceeeecCCCCcee-EEEECCCCCCEEEEEe-cCCcEEEEEEcCC
Confidence 55454 788899988 7654332211 112221 12221 234565655 4688888777665
No 151
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=96.10 E-value=0.42 Score=51.01 Aligned_cols=72 Identities=10% Similarity=0.123 Sum_probs=47.0
Q ss_pred CCCEEEEEeCCCEEEEEECcCCccceEEEcCcccceeeeeee-eCCEEEEEEccCCeEEEEeCCCCcEeEEEeccCc
Q 003800 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIA-LGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGS 127 (794)
Q Consensus 52 ~~~~Vyv~t~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~-~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~l~~~ 127 (794)
++..+.+++++| +.-.|..+++...+..... +...... .++.++++++.++.|+.||..+|+.+-+......
T Consensus 30 dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~~~~~ 102 (355)
T 3vu4_A 30 DQSCLILSTLKS-FEIYNVHPVAHIMSQEMRH---LSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIKVDAP 102 (355)
T ss_dssp TSSEEEEECSSE-EEEEEETTEEEEEEEECSC---CCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEECSSC
T ss_pred CCCEEEEEcCCE-EEEEecCCcceeeeeecCC---eEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEECCCc
Confidence 345566666665 4577888888888776642 2212112 3444545566567999999999999988876543
No 152
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=96.02 E-value=1.1 Score=45.96 Aligned_cols=143 Identities=10% Similarity=0.000 Sum_probs=72.5
Q ss_pred EEEEeCCCEEEEEECcCCccceEEEcCcccceeeeeeeeCCEEEEEEcc-CCeEEEEeCCCCcEeEEEeccCccccCCcc
Q 003800 56 VVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSD-GSTLRAWNLPDGQMVWESFLRGSKHSKPLL 134 (794)
Q Consensus 56 Vyv~t~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~~-g~~v~A~d~~tG~llWe~~l~~~~~s~~~~ 134 (794)
+++.+..+.|..+|+++| .+........+.++.. ..++.++++.. ++.|+.||+.+|+...-...........
T Consensus 43 ~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~~l~~-~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~-- 116 (296)
T 3e5z_A 43 IFSDVRQNRTWAWSDDGQ---LSPEMHPSHHQNGHCL-NKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNS-- 116 (296)
T ss_dssp EEEEGGGTEEEEEETTSC---EEEEESSCSSEEEEEE-CTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCC--
T ss_pred EEEeCCCCEEEEEECCCC---eEEEECCCCCcceeeE-CCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCC--
Confidence 555667899999999988 2322222222334422 22333445543 4789999999998765432211110000
Q ss_pred ccccccccccCCeEEEEE-------------------CCEEEEEECCCCcEEEEEeccCcceeeeeEEEEecCCEEEEEE
Q 003800 135 LVPTNLKVDKDSLILVSS-------------------KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVG 195 (794)
Q Consensus 135 ~~~~~~~~~~~~~V~V~~-------------------~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~s~~~~~vyv~~ 195 (794)
+.....+.++.+++.. .+.|+.++.. |+..-..... . .+..+.. ..++..++..
T Consensus 117 --~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~--~-~~~gi~~-s~dg~~lv~~ 189 (296)
T 3e5z_A 117 --PNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDR--V-KPNGLAF-LPSGNLLVSD 189 (296)
T ss_dssp --CCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCC--S-SEEEEEE-CTTSCEEEEE
T ss_pred --CCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCC--C-CCccEEE-CCCCCEEEEe
Confidence 0011233356666631 3578888876 6643322111 1 1223322 2344444433
Q ss_pred ecCCceeEEEEEEcC-CCce
Q 003800 196 YAGSSQFHAYQINAM-NGEL 214 (794)
Q Consensus 196 ~~g~~~~~v~ald~~-tG~~ 214 (794)
...+ .+..+|.. +|+.
T Consensus 190 ~~~~---~i~~~~~~~~g~~ 206 (296)
T 3e5z_A 190 TGDN---ATHRYCLNARGET 206 (296)
T ss_dssp TTTT---EEEEEEECSSSCE
T ss_pred CCCC---eEEEEEECCCCcC
Confidence 3222 67777775 6765
No 153
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=96.01 E-value=3.1 Score=47.76 Aligned_cols=110 Identities=12% Similarity=0.055 Sum_probs=63.8
Q ss_pred CCCEEEEEeCCCEEEEEECcCCccceEEEc------CcccceeeeeeeeCCEEEEEEccCCeEEEEeCCCCcEeEEEecc
Q 003800 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVL------GINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLR 125 (794)
Q Consensus 52 ~~~~Vyv~t~~g~l~ALn~~tG~ivWR~~l------~~~~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~l~ 125 (794)
++..+..++.++.|.-.|.++|+..-.... ...+.+..+....++..++.++.++.++.||..+|+.+-+....
T Consensus 201 dg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~ 280 (611)
T 1nr0_A 201 DGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVG 280 (611)
T ss_dssp TSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred CCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCC
Confidence 456788899999999999999986533211 12223434422223334443555679999999999988776654
Q ss_pred CccccCCccccccccccccCCeEEEE-ECCEEEEEECCCCcEE
Q 003800 126 GSKHSKPLLLVPTNLKVDKDSLILVS-SKGCLHAVSSIDGEIL 167 (794)
Q Consensus 126 ~~~~s~~~~~~~~~~~~~~~~~V~V~-~~g~l~ald~~tG~~~ 167 (794)
.... .. ... ...+ ++.++.. .+|.+...|..+|+..
T Consensus 281 ~~~~-~~--~~~--~~~~-~~~l~s~s~d~~i~~~~~~~~~~~ 317 (611)
T 1nr0_A 281 TRIE-DQ--QLG--IIWT-KQALVSISANGFINFVNPELGSID 317 (611)
T ss_dssp SSGG-GC--EEE--EEEC-SSCEEEEETTCCEEEEETTTTEEE
T ss_pred CCcc-ce--eEE--EEEc-CCEEEEEeCCCcEEEEeCCCCCcc
Confidence 2211 00 010 0111 2333333 3777777777777643
No 154
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=95.89 E-value=2.2 Score=45.10 Aligned_cols=151 Identities=11% Similarity=0.079 Sum_probs=88.8
Q ss_pred CCEEEEEeCCCEEEEEECcCCccceEEEcCcc--cceeeeeeeeCCEEEEEEccCCeEEEEeCCCCcEeEEEeccCcccc
Q 003800 53 RKRVVVSTEENVIASLDLRHGEIFWRHVLGIN--DVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHS 130 (794)
Q Consensus 53 ~~~Vyv~t~~g~l~ALn~~tG~ivWR~~l~~~--~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~l~~~~~s 130 (794)
...+++++.+|.|.-.|.+++ ..-....... ..+..+.....+..++.++.++.|+.||. +|+.++.........
T Consensus 131 ~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v- 207 (383)
T 3ei3_B 131 TNQLFVSSIRGATTLRDFSGS-VIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKV- 207 (383)
T ss_dssp EEEEEEEETTTEEEEEETTSC-EEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCE-
T ss_pred CCEEEEEeCCCEEEEEECCCC-ceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcE-
Confidence 356888899999999999853 3333222221 22333322334445555666789999998 799998887654332
Q ss_pred CCccccccccccccCC-eEEEEE-CCEEEEEECCC----CcEEEEEeccCcceeeeeEEEEe-cCCEEEEEEecCCceeE
Q 003800 131 KPLLLVPTNLKVDKDS-LILVSS-KGCLHAVSSID----GEILWTRDFAAESVEVQQVIQLD-ESDQIYVVGYAGSSQFH 203 (794)
Q Consensus 131 ~~~~~~~~~~~~~~~~-~V~V~~-~g~l~ald~~t----G~~~W~~~~~~~~~~~~~~v~s~-~~~~vyv~~~~g~~~~~ 203 (794)
..+.+.+ + +. .++..+ ++.+...|..+ +...-....... ...+..+. .+..++..+.+| .
T Consensus 208 ~~~~~~~-----~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~---v~~~~~s~~~~~~l~~~~~d~----~ 274 (383)
T 3ei3_B 208 THAEFNP-----R-CDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKP---VNAAYFNPTDSTKLLTTDQRN----E 274 (383)
T ss_dssp EEEEECS-----S-CTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSC---EEEEEECTTTSCEEEEEESSS----E
T ss_pred EEEEECC-----C-CCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCc---eEEEEEcCCCCCEEEEEcCCC----c
Confidence 1121211 2 22 344443 89999999988 666665543322 22232223 334444444444 7
Q ss_pred EEEEEcCCCceeeeee
Q 003800 204 AYQINAMNGELLNHET 219 (794)
Q Consensus 204 v~ald~~tG~~~w~~~ 219 (794)
+..+|..+|+......
T Consensus 275 i~iwd~~~~~~~~~~~ 290 (383)
T 3ei3_B 275 IRVYSSYDWSKPDQII 290 (383)
T ss_dssp EEEEETTBTTSCSEEE
T ss_pred EEEEECCCCccccccc
Confidence 8899999998875543
No 155
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=95.84 E-value=1.2 Score=45.88 Aligned_cols=148 Identities=11% Similarity=0.063 Sum_probs=76.7
Q ss_pred CCEEEEEe-CCCEEEEEECcCCccceEEEcCcccceeeeeeeeCCEEEEEEccCCeEEEEeCCCCcEeEEEeccCccccC
Q 003800 53 RKRVVVST-EENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSK 131 (794)
Q Consensus 53 ~~~Vyv~t-~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~l~~~~~s~ 131 (794)
++.+|+.+ ..+.|..+|+++|+.. ...++. .+.++.....+. ++++. ++.|+.||..+|+...-.......
T Consensus 24 ~~~l~~~d~~~~~i~~~d~~~~~~~-~~~~~~--~~~~i~~~~dG~-l~v~~-~~~l~~~d~~~g~~~~~~~~~~~~--- 95 (297)
T 3g4e_A 24 SNSLLFVDIPAKKVCRWDSFTKQVQ-RVTMDA--PVSSVALRQSGG-YVATI-GTKFCALNWKEQSAVVLATVDNDK--- 95 (297)
T ss_dssp TTEEEEEETTTTEEEEEETTTCCEE-EEECSS--CEEEEEEBTTSS-EEEEE-TTEEEEEETTTTEEEEEEECCTTC---
T ss_pred CCEEEEEECCCCEEEEEECCCCcEE-EEeCCC--ceEEEEECCCCC-EEEEE-CCeEEEEECCCCcEEEEEecCCCC---
Confidence 56677765 4689999999998762 122222 233442222333 55555 458999999999876544432110
Q ss_pred CccccccccccccCCeEEEEE-------------CCEEEEEECCCCcEEEEEeccCcceeeeeEEEEecCCEEEEEEecC
Q 003800 132 PLLLVPTNLKVDKDSLILVSS-------------KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAG 198 (794)
Q Consensus 132 ~~~~~~~~~~~~~~~~V~V~~-------------~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~s~~~~~vyv~~~~g 198 (794)
.. ..+.....+.++.+++.. .+.|++++.. |+..-..... . .+..+..+.++..+|+.....
T Consensus 96 ~~-~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~~~~~~--~-~pngi~~spdg~~lyv~~~~~ 170 (297)
T 3g4e_A 96 KN-NRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVKKYFDQV--D-ISNGLDWSLDHKIFYYIDSLS 170 (297)
T ss_dssp SS-EEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEEEEEEE--S-BEEEEEECTTSCEEEEEEGGG
T ss_pred CC-CCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEEEEeecc--c-cccceEEcCCCCEEEEecCCC
Confidence 00 000011334356677643 1478888864 5432211110 0 122332223455688765433
Q ss_pred CceeEEEEEE--cCCCceee
Q 003800 199 SSQFHAYQIN--AMNGELLN 216 (794)
Q Consensus 199 ~~~~~v~ald--~~tG~~~w 216 (794)
+ ++..+| +.+|....
T Consensus 171 ~---~i~~~~~d~~~G~~~~ 187 (297)
T 3g4e_A 171 Y---SVDAFDYDLQTGQISN 187 (297)
T ss_dssp T---EEEEEEECTTTCCEEE
T ss_pred C---cEEEEeccCCCCcccC
Confidence 2 455555 57887643
No 156
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=95.84 E-value=1.8 Score=50.59 Aligned_cols=192 Identities=14% Similarity=0.084 Sum_probs=105.4
Q ss_pred cCCCEEEEEeCCCEEEEEECcCCccceEEEcCcccceeeeeeeeCCEEEEEEccCCeEEEEeCCCCcEeEEEeccCcccc
Q 003800 51 TGRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHS 130 (794)
Q Consensus 51 ~~~~~Vyv~t~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~l~~~~~s 130 (794)
.++..+++++.+|.|.-.|.++|+...+..-.. ..+..+.....+..++.++.++.|+.||.. +...+..........
T Consensus 440 ~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~-~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~-~~~~~~~~~~~~~h~ 517 (694)
T 3dm0_A 440 SDGQFALSGSWDGELRLWDLAAGVSTRRFVGHT-KDVLSVAFSLDNRQIVSASRDRTIKLWNTL-GECKYTISEGGEGHR 517 (694)
T ss_dssp TTSSEEEEEETTSEEEEEETTTTEEEEEEECCS-SCEEEEEECTTSSCEEEEETTSCEEEECTT-SCEEEEECSSTTSCS
T ss_pred CCCCEEEEEeCCCcEEEEECCCCcceeEEeCCC-CCEEEEEEeCCCCEEEEEeCCCEEEEEECC-CCcceeeccCCCCCC
Confidence 346678899999999999999998876654322 234444222333344445556799999975 444454432221110
Q ss_pred CCccccccccccccCCeEEE-EE-CCEEEEEECCCCcEEEEEeccCcceeeeeEEEEecCCEEEEEEecCCceeEEEEEE
Q 003800 131 KPLLLVPTNLKVDKDSLILV-SS-KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQIN 208 (794)
Q Consensus 131 ~~~~~~~~~~~~~~~~~V~V-~~-~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~s~~~~~vyv~~~~g~~~~~v~ald 208 (794)
.....+. ...+.....++ .+ ++.+...|..+++..-+........ ..+..+..+..+...+.+| .+...|
T Consensus 518 ~~v~~~~--~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v--~~v~~spdg~~l~sg~~Dg----~i~iwd 589 (694)
T 3dm0_A 518 DWVSCVR--FSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYV--STVAVSPDGSLCASGGKDG----VVLLWD 589 (694)
T ss_dssp SCEEEEE--ECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCE--EEEEECTTSSEEEEEETTS----BCEEEE
T ss_pred CcEEEEE--EeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCE--EEEEEeCCCCEEEEEeCCC----eEEEEE
Confidence 1111110 01111122333 33 8999999999998876665433222 2222222333344333344 688889
Q ss_pred cCCCceeeeeeeecccCccCceEEE-cCcEEEEEECCCCeEEEEEeecce
Q 003800 209 AMNGELLNHETAAFSGGFVGDVALV-SSDTLVTLDTTRSILVTVSFKNRK 257 (794)
Q Consensus 209 ~~tG~~~w~~~v~~~~~~s~~~~~v-g~~~lv~~d~~~g~L~v~~l~sg~ 257 (794)
..+|+.+.+... ...+.. +.+- .+..+++.. .+.+++-|+.+++
T Consensus 590 ~~~~~~~~~~~~--~~~v~~-~~~sp~~~~l~~~~--~~~i~iwd~~~~~ 634 (694)
T 3dm0_A 590 LAEGKKLYSLEA--NSVIHA-LCFSPNRYWLCAAT--EHGIKIWDLESKS 634 (694)
T ss_dssp TTTTEEEECCBC--SSCEEE-EEECSSSSEEEEEE--TTEEEEEETTTTE
T ss_pred CCCCceEEEecC--CCcEEE-EEEcCCCcEEEEEc--CCCEEEEECCCCC
Confidence 999998765532 222221 2221 233444443 3568889998887
No 157
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=95.77 E-value=0.95 Score=47.33 Aligned_cols=184 Identities=7% Similarity=-0.025 Sum_probs=95.6
Q ss_pred CCEEEEEeCCCEEEEEECcCCccceEEEcCccc---ceeeeeeeeC-CEEEEEEcc------------------CCeEEE
Q 003800 53 RKRVVVSTEENVIASLDLRHGEIFWRHVLGIND---VVDGIDIALG-KYVITLSSD------------------GSTLRA 110 (794)
Q Consensus 53 ~~~Vyv~t~~g~l~ALn~~tG~ivWR~~l~~~~---~i~~l~~~~g-~~~V~Vs~~------------------g~~v~A 110 (794)
++++|+++..+-|..+|+++|++..-....... ....+ .... ++.++++.. .+.|+.
T Consensus 91 ~g~l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i-~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~ 169 (322)
T 2fp8_A 91 NNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAV-TVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIK 169 (322)
T ss_dssp TTEEEEEETTTEEEEECTTCEECEEEESEETTEECSCEEEE-EECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEE
T ss_pred CCcEEEEECCCCEEEEeCCCCEEEEecccCCCCcccccceE-EEecCCCEEEEECCcccccccccceehcccCCCceEEE
Confidence 678999987777999999888642211111110 11223 1233 456666532 257999
Q ss_pred EeCCCCcEeEEE-eccCccccCCccccccccccccCC-eEEEEE--CCEEEEEECCC---CcEEEEEeccCcceeeeeEE
Q 003800 111 WNLPDGQMVWES-FLRGSKHSKPLLLVPTNLKVDKDS-LILVSS--KGCLHAVSSID---GEILWTRDFAAESVEVQQVI 183 (794)
Q Consensus 111 ~d~~tG~llWe~-~l~~~~~s~~~~~~~~~~~~~~~~-~V~V~~--~g~l~ald~~t---G~~~W~~~~~~~~~~~~~~v 183 (794)
+|+.+|+..--. .+..+ ..+ ..+.++ .++|.. +++|++++..+ |...--...+. |..+.
T Consensus 170 ~d~~~~~~~~~~~~~~~p---~gi-------a~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g----P~gi~ 235 (322)
T 2fp8_A 170 YDPSTKETTLLLKELHVP---GGA-------EVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN----PGNIK 235 (322)
T ss_dssp EETTTTEEEEEEEEESCC---CEE-------EECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS----EEEEE
T ss_pred EeCCCCEEEEeccCCccC---cce-------EECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC----CCCeE
Confidence 999888753221 11111 111 222243 477763 68999999875 33222112222 33443
Q ss_pred EEecCCEEEEEEecC-------CceeEEEEEEcCCCceeeeeeeecccC--ccC-ceEEEcCcEEEEEECCCCeEEEEEe
Q 003800 184 QLDESDQIYVVGYAG-------SSQFHAYQINAMNGELLNHETAAFSGG--FVG-DVALVSSDTLVTLDTTRSILVTVSF 253 (794)
Q Consensus 184 ~s~~~~~vyv~~~~g-------~~~~~v~ald~~tG~~~w~~~v~~~~~--~s~-~~~~vg~~~lv~~d~~~g~L~v~~l 253 (794)
...++.+|+..... +....+..+|+ +|+.+.... .+.+ +.. ..+...++.++..+..++.+.++++
T Consensus 236 -~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~--~~~g~~~~~~~~~~~~~g~L~v~~~~~~~i~~~~~ 311 (322)
T 2fp8_A 236 -RNADGHFWVSSSEELDGNMHGRVDPKGIKFDE-FGNILEVIP--LPPPFAGEHFEQIQEHDGLLYIGTLFHGSVGILVY 311 (322)
T ss_dssp -ECTTSCEEEEEEEETTSSTTSCEEEEEEEECT-TSCEEEEEE--CCTTTTTSCCCEEEEETTEEEEECSSCSEEEEEEC
T ss_pred -ECCCCCEEEEecCcccccccCCCccEEEEECC-CCCEEEEEE--CCCCCccccceEEEEeCCEEEEeecCCCceEEEec
Confidence 23567899876541 11247899998 588775553 3322 222 1122234455555555566666665
Q ss_pred ec
Q 003800 254 KN 255 (794)
Q Consensus 254 ~s 255 (794)
..
T Consensus 312 ~~ 313 (322)
T 2fp8_A 312 DK 313 (322)
T ss_dssp --
T ss_pred cc
Confidence 54
No 158
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=95.76 E-value=0.15 Score=54.71 Aligned_cols=194 Identities=10% Similarity=0.049 Sum_probs=107.6
Q ss_pred CCEEEEEeCCCEEEEEECcCCc------cceEEEc--CcccceeeeeeeeC-CEEEEEEccCCeEEEEeCCCCcEeEEEe
Q 003800 53 RKRVVVSTEENVIASLDLRHGE------IFWRHVL--GINDVVDGIDIALG-KYVITLSSDGSTLRAWNLPDGQMVWESF 123 (794)
Q Consensus 53 ~~~Vyv~t~~g~l~ALn~~tG~------ivWR~~l--~~~~~i~~l~~~~g-~~~V~Vs~~g~~v~A~d~~tG~llWe~~ 123 (794)
+..+++++.+|.|...|.++++ ...+... .....+..+..... +..++.++.++.|+.||..+|+.+.+..
T Consensus 126 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~ 205 (416)
T 2pm9_A 126 DNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLS 205 (416)
T ss_dssp TTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEEC
T ss_pred CCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEe
Confidence 5568889999999999999997 4443211 11122333322222 4566656667899999999999998887
Q ss_pred ccCccc--cCCccccccccccccCCeEEEEE-CC---EEEEEECCCC-cEEEEEe-ccCcceeeeeEEEEe-cCCEEEEE
Q 003800 124 LRGSKH--SKPLLLVPTNLKVDKDSLILVSS-KG---CLHAVSSIDG-EILWTRD-FAAESVEVQQVIQLD-ESDQIYVV 194 (794)
Q Consensus 124 l~~~~~--s~~~~~~~~~~~~~~~~~V~V~~-~g---~l~ald~~tG-~~~W~~~-~~~~~~~~~~~v~s~-~~~~vyv~ 194 (794)
...... ......+. ...++...++..+ ++ .+...|..++ .+..... ..... ...+..+. .+..++..
T Consensus 206 ~~~~~~~~~~~v~~~~--~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~--v~~~~~s~~~~~~l~s~ 281 (416)
T 2pm9_A 206 YTSPNSGIKQQLSVVE--WHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKG--ILSLDWCHQDEHLLLSS 281 (416)
T ss_dssp CCCCSSCCCCCEEEEE--ECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSC--EEEEEECSSCSSCEEEE
T ss_pred ccccccccCCceEEEE--ECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCc--eeEEEeCCCCCCeEEEE
Confidence 652100 00111110 0112112344443 65 8999998887 4444443 11111 22232222 23344444
Q ss_pred EecCCceeEEEEEEcCCCceeeeeeeecccCccCceEEE-cC-cEEEEEECCCCeEEEEEeecce
Q 003800 195 GYAGSSQFHAYQINAMNGELLNHETAAFSGGFVGDVALV-SS-DTLVTLDTTRSILVTVSFKNRK 257 (794)
Q Consensus 195 ~~~g~~~~~v~ald~~tG~~~w~~~v~~~~~~s~~~~~v-g~-~~lv~~d~~~g~L~v~~l~sg~ 257 (794)
+.+| .+..+|..+|+.+.+.... ...+. .+.+. .+ .++++.. ..+.+.+-++.++.
T Consensus 282 ~~dg----~v~~wd~~~~~~~~~~~~~-~~~v~-~~~~s~~~~~~l~s~~-~d~~i~iw~~~~~~ 339 (416)
T 2pm9_A 282 GRDN----TVLLWNPESAEQLSQFPAR-GNWCF-KTKFAPEAPDLFACAS-FDNKIEVQTLQNLT 339 (416)
T ss_dssp ESSS----EEEEECSSSCCEEEEEECS-SSCCC-CEEECTTCTTEEEECC-SSSEEEEEESCCCC
T ss_pred eCCC----CEEEeeCCCCccceeecCC-CCceE-EEEECCCCCCEEEEEe-cCCcEEEEEccCCC
Confidence 4444 7888999999888665421 11222 22222 22 4555554 45888888888765
No 159
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=95.73 E-value=0.65 Score=50.23 Aligned_cols=68 Identities=9% Similarity=0.188 Sum_probs=40.3
Q ss_pred CCCEEEEEeCCCEEEEEECcCCcc-------ceE--EEcC-cc------------cceeeeeeeeCC--EEEEEEccCCe
Q 003800 52 GRKRVVVSTEENVIASLDLRHGEI-------FWR--HVLG-IN------------DVVDGIDIALGK--YVITLSSDGST 107 (794)
Q Consensus 52 ~~~~Vyv~t~~g~l~ALn~~tG~i-------vWR--~~l~-~~------------~~i~~l~~~~g~--~~V~Vs~~g~~ 107 (794)
+++.+++++.+|.|.-.|..+|+. .|+ ..+. .. ..+..+.....+ ..++.++.++.
T Consensus 39 ~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~ 118 (447)
T 3dw8_B 39 SGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKT 118 (447)
T ss_dssp SSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSC
T ss_pred CCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCe
Confidence 467788999999999999998873 121 1121 11 223333222222 34555666689
Q ss_pred EEEEeCCCCcEe
Q 003800 108 LRAWNLPDGQMV 119 (794)
Q Consensus 108 v~A~d~~tG~ll 119 (794)
|+.||..++...
T Consensus 119 i~iw~~~~~~~~ 130 (447)
T 3dw8_B 119 IKLWKISERDKR 130 (447)
T ss_dssp EEEEEEEEEEEE
T ss_pred EEEEecccccCC
Confidence 999999887654
No 160
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=95.71 E-value=1.6 Score=46.32 Aligned_cols=157 Identities=11% Similarity=0.098 Sum_probs=82.3
Q ss_pred cCCCEEEEEeCCCEEEEEECc-CCccceEEEcCcccceeeeeeeeCCE--EEEEEc-------------cCCeEEEEeCC
Q 003800 51 TGRKRVVVSTEENVIASLDLR-HGEIFWRHVLGINDVVDGIDIALGKY--VITLSS-------------DGSTLRAWNLP 114 (794)
Q Consensus 51 ~~~~~Vyv~t~~g~l~ALn~~-tG~ivWR~~l~~~~~i~~l~~~~g~~--~V~Vs~-------------~g~~v~A~d~~ 114 (794)
.+++.+|+++.. .|..+|.. +|+..........+....+....++. .++++. .++.++.|+..
T Consensus 49 pdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~ 127 (365)
T 1jof_A 49 HERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVS 127 (365)
T ss_dssp TTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEEC
T ss_pred CCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccC
Confidence 345669988887 88889887 89875433221111111221122334 234332 45789999987
Q ss_pred -CCcEeEEEecc---CccccCCccccccccccccCCeEEEEE--CCEEEEEECC-CCcEEE--EEeccCcceeeeeEEEE
Q 003800 115 -DGQMVWESFLR---GSKHSKPLLLVPTNLKVDKDSLILVSS--KGCLHAVSSI-DGEILW--TRDFAAESVEVQQVIQL 185 (794)
Q Consensus 115 -tG~llWe~~l~---~~~~s~~~~~~~~~~~~~~~~~V~V~~--~g~l~ald~~-tG~~~W--~~~~~~~~~~~~~~v~s 185 (794)
+|++.=..... .......+.+ ..+ ++.+++.. ++.++.+|.. +|+..- ....+.....|..+..+
T Consensus 128 ~~g~~~~~~~~~~~~~~~~~~~~~~-----spd-G~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~s 201 (365)
T 1jof_A 128 ETGKLEKNVQNYEYQENTGIHGMVF-----DPT-ETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMH 201 (365)
T ss_dssp TTCCEEEEEEEEECCTTCCEEEEEE-----CTT-SSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEEC
T ss_pred CCCcCcceEeeEEeCCCCcceEEEE-----CCC-CCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEEC
Confidence 68765333221 1110001111 122 33566653 5789999988 897643 23322211224455433
Q ss_pred ecCCEEEEEEecCCceeEEEEEEcCCCcee
Q 003800 186 DESDQIYVVGYAGSSQFHAYQINAMNGELL 215 (794)
Q Consensus 186 ~~~~~vyv~~~~g~~~~~v~ald~~tG~~~ 215 (794)
.++..+|+.+.. +..+.++.+|..+|+..
T Consensus 202 pdg~~l~v~~~~-~~~v~v~~~~~~~g~~~ 230 (365)
T 1jof_A 202 PTGNYLYALMEA-GNRICEYVIDPATHMPV 230 (365)
T ss_dssp TTSSEEEEEETT-TTEEEEEEECTTTCCEE
T ss_pred CCCCEEEEEECC-CCeEEEEEEeCCCCcEE
Confidence 445567775533 23455666677789865
No 161
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=95.70 E-value=0.69 Score=48.35 Aligned_cols=186 Identities=12% Similarity=0.060 Sum_probs=100.4
Q ss_pred EEEEEeCCCEEEEEECcCCccceEEEcCcccc---eeeeeeeeCCEEEEEEcc-----C------CeEEEEeCCCCcEeE
Q 003800 55 RVVVSTEENVIASLDLRHGEIFWRHVLGINDV---VDGIDIALGKYVITLSSD-----G------STLRAWNLPDGQMVW 120 (794)
Q Consensus 55 ~Vyv~t~~g~l~ALn~~tG~ivWR~~l~~~~~---i~~l~~~~g~~~V~Vs~~-----g------~~v~A~d~~tG~llW 120 (794)
.+|+... +.+.++|+.+++ |+. .+.+.. .....+..++.++++||. + ..+..||+.+++ |
T Consensus 6 ~l~~~GG-~~~~~yd~~~~~--W~~-~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~--W 79 (315)
T 4asc_A 6 LIFMISE-EGAVAYDPAANE--CYC-ASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSE--W 79 (315)
T ss_dssp EEEEEET-TEEEEEETTTTE--EEE-EECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTE--E
T ss_pred EEEEEcC-CceEEECCCCCe--Eec-CCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCe--E
Confidence 4555544 689999999987 986 221111 111112346666666762 1 138899998875 8
Q ss_pred EEeccCccccCCccccccccccccCCeEEEEEC----------CEEEEEECCCCcEEEEEeccCcceeeeeEEEEecCCE
Q 003800 121 ESFLRGSKHSKPLLLVPTNLKVDKDSLILVSSK----------GCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQ 190 (794)
Q Consensus 121 e~~l~~~~~s~~~~~~~~~~~~~~~~~V~V~~~----------g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~s~~~~~ 190 (794)
+.....+. +..... ....++.+++..+ ..+..+|..++ .|+.-.+.+.-...... ...++.
T Consensus 80 ~~~~~~p~-----~r~~~~-~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~--~W~~~~~~p~~r~~~~~-~~~~~~ 150 (315)
T 4asc_A 80 LGMPPLPS-----PRCLFG-LGEALNSIYVVGGREIKDGERCLDSVMCYDRLSF--KWGESDPLPYVVYGHTV-LSHMDL 150 (315)
T ss_dssp EECCCBSS-----CEESCE-EEEETTEEEEECCEESSTTCCBCCCEEEEETTTT--EEEECCCCSSCCBSCEE-EEETTE
T ss_pred EECCCCCc-----chhcee-EEEECCEEEEEeCCcCCCCCcccceEEEECCCCC--cEeECCCCCCcccceeE-EEECCE
Confidence 65422111 111100 1112567777532 35889998887 48865443321011111 246888
Q ss_pred EEEEEecC---CceeEEEEEEcCCCceeeeeeeecccCccC-ceEEEcCcEEEEEECCC----CeEEEEEeecce
Q 003800 191 IYVVGYAG---SSQFHAYQINAMNGELLNHETAAFSGGFVG-DVALVSSDTLVTLDTTR----SILVTVSFKNRK 257 (794)
Q Consensus 191 vyv~~~~g---~~~~~v~ald~~tG~~~w~~~v~~~~~~s~-~~~~vg~~~lv~~d~~~----g~L~v~~l~sg~ 257 (794)
+|+++..+ ...-.+..+|+.+. .|+..-..|..... .+...++.+++..-... ..+.+.|+.+++
T Consensus 151 iyv~GG~~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 223 (315)
T 4asc_A 151 VYVIGGKGSDRKCLNKMCVYDPKKF--EWKELAPMQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNK 223 (315)
T ss_dssp EEEECCBCTTSCBCCCEEEEETTTT--EEEECCCCSSCCBSCEEEEETTEEEEEEEECSSSEEEEEEEEETTTTE
T ss_pred EEEEeCCCCCCcccceEEEEeCCCC--eEEECCCCCCchhceEEEEECCEEEEEeccCCCCccceEEEEECCCCe
Confidence 99887541 11236889999876 57775445544443 33334555555542211 246677777665
No 162
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=95.69 E-value=0.7 Score=47.25 Aligned_cols=71 Identities=7% Similarity=0.125 Sum_probs=45.5
Q ss_pred CCEEEEEeCCCEEEEEECcCCcc-----ceEEE--cC-cccceeeeeeeeC--CEEEEEEccCCeEEEEeCCCCcEeEEE
Q 003800 53 RKRVVVSTEENVIASLDLRHGEI-----FWRHV--LG-INDVVDGIDIALG--KYVITLSSDGSTLRAWNLPDGQMVWES 122 (794)
Q Consensus 53 ~~~Vyv~t~~g~l~ALn~~tG~i-----vWR~~--l~-~~~~i~~l~~~~g--~~~V~Vs~~g~~v~A~d~~tG~llWe~ 122 (794)
+..+++++.+|.|...|.++|+. .|+.. +. ....+..+..... +..++.++.++.|+.||..+++.+-..
T Consensus 71 ~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~ 150 (351)
T 3f3f_A 71 GRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSW 150 (351)
T ss_dssp CSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCC
T ss_pred CCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccc
Confidence 56789999999999999999853 22221 21 1223433322222 445555566679999999999876554
Q ss_pred e
Q 003800 123 F 123 (794)
Q Consensus 123 ~ 123 (794)
.
T Consensus 151 ~ 151 (351)
T 3f3f_A 151 T 151 (351)
T ss_dssp E
T ss_pred c
Confidence 4
No 163
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=95.67 E-value=4.2 Score=47.44 Aligned_cols=109 Identities=9% Similarity=0.009 Sum_probs=60.4
Q ss_pred cCCCEEEEEeC-CC-----EEEEEECcCCccceEEEcCccc-----------------------ceeeeeeeeCCEEEEE
Q 003800 51 TGRKRVVVSTE-EN-----VIASLDLRHGEIFWRHVLGIND-----------------------VVDGIDIALGKYVITL 101 (794)
Q Consensus 51 ~~~~~Vyv~t~-~g-----~l~ALn~~tG~ivWR~~l~~~~-----------------------~i~~l~~~~g~~~V~V 101 (794)
.+++.|++++. ++ .|...|..+|+..-........ .+..+...-++..+++
T Consensus 46 pdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~ 125 (741)
T 2ecf_A 46 PDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSPDAQRLLF 125 (741)
T ss_dssp TTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEECTTSSEEEE
T ss_pred cCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECCCCCEEEE
Confidence 45667888887 77 8999999999864333221110 1222222223333433
Q ss_pred EccCCeEEEEeCCCC---cEeEEEeccCccccCCccccccccccccCCeEEEEECCEEEEEECCCCcEEE
Q 003800 102 SSDGSTLRAWNLPDG---QMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSSKGCLHAVSSIDGEILW 168 (794)
Q Consensus 102 s~~g~~v~A~d~~tG---~llWe~~l~~~~~s~~~~~~~~~~~~~~~~~V~V~~~g~l~ald~~tG~~~W 168 (794)
++. +.|+.||..+| ... +........ ..+.+ ..+ ++.+++..++.|+.+|..+|+..-
T Consensus 126 ~~~-~~i~~~d~~~~~~~~~~-~l~~~~~~~-~~~~~-----SPD-G~~la~~~~~~i~~~d~~~g~~~~ 186 (741)
T 2ecf_A 126 PLG-GELYLYDLKQEGKAAVR-QLTHGEGFA-TDAKL-----SPK-GGFVSFIRGRNLWVIDLASGRQMQ 186 (741)
T ss_dssp EET-TEEEEEESSSCSTTSCC-BCCCSSSCE-EEEEE-----CTT-SSEEEEEETTEEEEEETTTTEEEE
T ss_pred EeC-CcEEEEECCCCCcceEE-EcccCCccc-ccccC-----CCC-CCEEEEEeCCcEEEEecCCCCEEE
Confidence 443 69999999988 443 111111111 11111 122 344555578899999999987653
No 164
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=95.65 E-value=1.7 Score=45.26 Aligned_cols=146 Identities=11% Similarity=0.130 Sum_probs=80.4
Q ss_pred CCEEEEEe-CCCEEEEEECcCCccceEEEcCcccceeeeeeeeCCEEEEEEc--c-CCeEEEEeCCCCcEeEEEeccCcc
Q 003800 53 RKRVVVST-EENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSS--D-GSTLRAWNLPDGQMVWESFLRGSK 128 (794)
Q Consensus 53 ~~~Vyv~t-~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~--~-g~~v~A~d~~tG~llWe~~l~~~~ 128 (794)
++++|+++ ..+.|..+|++++... ..... ....++....++. ++|+. . +..+..+|..+|++..-.......
T Consensus 42 ~g~lyv~d~~~~~I~~~d~~g~~~~-~~~~~--~~p~gia~~~dG~-l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~ 117 (306)
T 2p4o_A 42 DGTIFVTNHEVGEIVSITPDGNQQI-HATVE--GKVSGLAFTSNGD-LVATGWNADSIPVVSLVKSDGTVETLLTLPDAI 117 (306)
T ss_dssp TSCEEEEETTTTEEEEECTTCCEEE-EEECS--SEEEEEEECTTSC-EEEEEECTTSCEEEEEECTTSCEEEEEECTTCS
T ss_pred CCCEEEEeCCCCeEEEECCCCceEE-EEeCC--CCceeEEEcCCCc-EEEEeccCCcceEEEEcCCCCeEEEEEeCCCcc
Confidence 56799988 6789999998754332 22232 2233442222333 55543 2 236889999999976544432211
Q ss_pred ccCCccccccccccccCCeEEEEE--CCEEEEEECCCCc-EEEEEec------cCcce-eeeeEEEEecCCEEEEEEecC
Q 003800 129 HSKPLLLVPTNLKVDKDSLILVSS--KGCLHAVSSIDGE-ILWTRDF------AAESV-EVQQVIQLDESDQIYVVGYAG 198 (794)
Q Consensus 129 ~s~~~~~~~~~~~~~~~~~V~V~~--~g~l~ald~~tG~-~~W~~~~------~~~~~-~~~~~v~s~~~~~vyv~~~~g 198 (794)
.... . ....++.+++.. ++.|+++|..+|+ .+|.... ..... .+..+ +.+++.+|+.....
T Consensus 118 ~~~g--~-----~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~ 188 (306)
T 2p4o_A 118 FLNG--I-----TPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEK 188 (306)
T ss_dssp CEEE--E-----EESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTT
T ss_pred ccCc--c-----cccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCC
Confidence 1000 0 111245667663 7899999998875 3453321 11111 13333 34667899866443
Q ss_pred CceeEEEEEEcCC-Cce
Q 003800 199 SSQFHAYQINAMN-GEL 214 (794)
Q Consensus 199 ~~~~~v~ald~~t-G~~ 214 (794)
+ ++..+|... |+.
T Consensus 189 ~---~I~~~~~~~~g~~ 202 (306)
T 2p4o_A 189 M---LLLRIPVDSTDKP 202 (306)
T ss_dssp T---EEEEEEBCTTSCB
T ss_pred C---EEEEEEeCCCCCC
Confidence 3 788888764 543
No 165
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=95.64 E-value=1.9 Score=44.32 Aligned_cols=191 Identities=14% Similarity=0.143 Sum_probs=105.2
Q ss_pred CCEEEEEeC-------CCEEEEEECcCCccceEEEcCccccee-eeeeeeCCEEEEEEccC-----CeEEEEeCCCCc-E
Q 003800 53 RKRVVVSTE-------ENVIASLDLRHGEIFWRHVLGINDVVD-GIDIALGKYVITLSSDG-----STLRAWNLPDGQ-M 118 (794)
Q Consensus 53 ~~~Vyv~t~-------~g~l~ALn~~tG~ivWR~~l~~~~~i~-~l~~~~g~~~V~Vs~~g-----~~v~A~d~~tG~-l 118 (794)
++.||+... .+.+.++|+.++ .|+..-..+..-. ...+..++.++++||.. ..+..||+.+++ .
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~--~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~ 91 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQ--EWSFLPSITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDG 91 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTT--EEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTCCTTC
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCC--eEEeCCCCChhhccccEEEECCEEEEEcCCCCCccCceEEEEECCCCCCC
Confidence 455666554 357999999988 4987543221111 11123566666667632 469999999886 5
Q ss_pred eEEEeccCccccCCccccccccccccCCeEEEEE-------CCEEEEEECCCCcEEEEEeccCcce-eeeeEEEEecCCE
Q 003800 119 VWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSS-------KGCLHAVSSIDGEILWTRDFAAESV-EVQQVIQLDESDQ 190 (794)
Q Consensus 119 lWe~~l~~~~~s~~~~~~~~~~~~~~~~~V~V~~-------~g~l~ald~~tG~~~W~~~~~~~~~-~~~~~v~s~~~~~ 190 (794)
.|+.....+.. ..... ....++.+++.. -..+..+|..+++ |+.-.+.+.- ....+ ...++.
T Consensus 92 ~W~~~~~~p~~-----r~~~~-~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~--W~~~~~~p~~r~~~~~--~~~~~~ 161 (301)
T 2vpj_A 92 VWYSVAPMNVR-----RGLAG-ATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQ--WSMLGDMQTAREGAGL--VVASGV 161 (301)
T ss_dssp CCEEECCCSSC-----CBSCE-EEEETTEEEEECCBCSSCBCCEEEEEETTTTE--EEEEEECSSCCBSCEE--EEETTE
T ss_pred eeEECCCCCCC-----cccee-EEEECCEEEEEcccCCCcccceEEEEcCCCCe--EEECCCCCCCcccceE--EEECCE
Confidence 58866332211 11100 111256777763 2468899988764 7654332211 01112 235788
Q ss_pred EEEEEecCC--ceeEEEEEEcCCCceeeeeeeecccCccC-ceEEEcCcEEEEEECC----CCeEEEEEeecce
Q 003800 191 IYVVGYAGS--SQFHAYQINAMNGELLNHETAAFSGGFVG-DVALVSSDTLVTLDTT----RSILVTVSFKNRK 257 (794)
Q Consensus 191 vyv~~~~g~--~~~~v~ald~~tG~~~w~~~v~~~~~~s~-~~~~vg~~~lv~~d~~----~g~L~v~~l~sg~ 257 (794)
+|+++...+ ..-.+..+|+.++ .|+..-..|..... .+...++.+++..-.. ...+.+.|+.+++
T Consensus 162 iyv~GG~~~~~~~~~~~~~d~~~~--~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 233 (301)
T 2vpj_A 162 IYCLGGYDGLNILNSVEKYDPHTG--HWTNVTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDS 233 (301)
T ss_dssp EEEECCBCSSCBCCCEEEEETTTT--EEEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred EEEECCCCCCcccceEEEEeCCCC--cEEeCCCCCcccccceEEEECCEEEEEeCCCCCcccceEEEEeCCCCc
Confidence 998764321 1235889999876 57765344444443 3333354444443211 2457788887776
No 166
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=95.63 E-value=3.2 Score=44.92 Aligned_cols=191 Identities=14% Similarity=0.118 Sum_probs=102.3
Q ss_pred CCCEEEEEeCCCEEEEEECcCCccceEEEcCcccceeeeeeeeCCEEEEEEccCCeEEEEeCCCCcEe-EEEeccCcccc
Q 003800 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMV-WESFLRGSKHS 130 (794)
Q Consensus 52 ~~~~Vyv~t~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~tG~ll-We~~l~~~~~s 130 (794)
++..+++++.+|.|.-.|.++|+.+....-... .+..+ ...+..++.++.++.++.||....... ..........
T Consensus 158 dg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~-~v~~~--s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~- 233 (420)
T 4gga_A 158 EGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSA-RVGSL--SWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEV- 233 (420)
T ss_dssp TSSEEEEEETTSCEEEEETTTTEEEEEECCCSS-CEEEE--EEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCE-
T ss_pred CCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCC-ceEEE--eeCCCEEEEEeCCCceeEeeecccceeeEEecccccce-
Confidence 466799999999999999999998877543222 23333 333445555666789999998765443 2333222211
Q ss_pred CCccccccccccccCCeEEEE-ECCEEEEEECCCCcEEE----EEeccCcceeeeeEEEEecCCEEEEEEecCCceeEEE
Q 003800 131 KPLLLVPTNLKVDKDSLILVS-SKGCLHAVSSIDGEILW----TRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAY 205 (794)
Q Consensus 131 ~~~~~~~~~~~~~~~~~V~V~-~~g~l~ald~~tG~~~W----~~~~~~~~~~~~~~v~s~~~~~vyv~~~~g~~~~~v~ 205 (794)
......+ . +..++.. .++.+...+..+|+..+ ........ ...+.....+..+++.+ .|+....+.
T Consensus 234 ~~~~~~~-----~-g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~--V~~~~~~p~~~~~la~~-~gs~D~~I~ 304 (420)
T 4gga_A 234 CGLRWAP-----D-GRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGA--VKAVAWCPWQSNVLATG-GGTSDRHIR 304 (420)
T ss_dssp EEEEECT-----T-SSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSC--EEEEEECTTCTTEEEEE-ECTTTCEEE
T ss_pred eeeeecC-----C-CCeeeeeeccccceEEeeccccccceeeeeecccCCc--eeeeeeCCCcccEEEEE-eecCCCEEE
Confidence 1111111 1 2333333 37888888887775332 11111111 11111112233343322 222223778
Q ss_pred EEEcCCCceeeeeeeecccCccCceEEEcCcEEEEEE-CCCCeEEEEEeecce
Q 003800 206 QINAMNGELLNHETAAFSGGFVGDVALVSSDTLVTLD-TTRSILVTVSFKNRK 257 (794)
Q Consensus 206 ald~~tG~~~w~~~v~~~~~~s~~~~~vg~~~lv~~d-~~~g~L~v~~l~sg~ 257 (794)
..|..+|+....... ...+...+.....+.+++.. ..++.+++-|+.+++
T Consensus 305 iwd~~t~~~~~~~~~--~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~ 355 (420)
T 4gga_A 305 IWNVCSGACLSAVDA--HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMA 355 (420)
T ss_dssp EEETTTTEEEEEEEC--SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCC
T ss_pred EEeCCccccceeecc--ccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCc
Confidence 889999998876632 22222111112334444443 346789999988877
No 167
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=95.60 E-value=1.8 Score=50.60 Aligned_cols=190 Identities=14% Similarity=0.123 Sum_probs=102.8
Q ss_pred CCEEEEEeCCCEEEEEECcCCccceE---EEcC-cccceeeeeeeeCCEEEEEEccCCeEEEEeCCCCcEeEEEeccCcc
Q 003800 53 RKRVVVSTEENVIASLDLRHGEIFWR---HVLG-INDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSK 128 (794)
Q Consensus 53 ~~~Vyv~t~~g~l~ALn~~tG~ivWR---~~l~-~~~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~l~~~~ 128 (794)
.+.++.++.++.|...|..++...+. +.+. ....+..+.....+..++.++.++.|+.||..+|+...+...+...
T Consensus 395 ~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~ 474 (694)
T 3dm0_A 395 ADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKD 474 (694)
T ss_dssp CSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSC
T ss_pred CCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCC
Confidence 45688899999999999887765542 2222 2223444433334445554566789999999999998887655433
Q ss_pred ccCCccccccccccccCCeEEEEE-CCEEEEEECCCCcEEEEEeccC--cceeeeeEEEEecC--CEEEEEEecCCceeE
Q 003800 129 HSKPLLLVPTNLKVDKDSLILVSS-KGCLHAVSSIDGEILWTRDFAA--ESVEVQQVIQLDES--DQIYVVGYAGSSQFH 203 (794)
Q Consensus 129 ~s~~~~~~~~~~~~~~~~~V~V~~-~g~l~ald~~tG~~~W~~~~~~--~~~~~~~~v~s~~~--~~vyv~~~~g~~~~~ 203 (794)
. ..+.+.+ + +..++..+ |+.+...|.. +...+...... .......+..+..+ ..++..+.+| .
T Consensus 475 v-~~~~~s~-----~-~~~l~s~s~D~~i~iwd~~-~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~----~ 542 (694)
T 3dm0_A 475 V-LSVAFSL-----D-NRQIVSASRDRTIKLWNTL-GECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDK----T 542 (694)
T ss_dssp E-EEEEECT-----T-SSCEEEEETTSCEEEECTT-SCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTS----C
T ss_pred E-EEEEEeC-----C-CCEEEEEeCCCEEEEEECC-CCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCC----e
Confidence 2 1111111 2 23344443 7888877754 33444433211 11101112111111 2344434444 6
Q ss_pred EEEEEcCCCceeeeeeeecccCccCceEEE-cCcEEEEEECCCCeEEEEEeecce
Q 003800 204 AYQINAMNGELLNHETAAFSGGFVGDVALV-SSDTLVTLDTTRSILVTVSFKNRK 257 (794)
Q Consensus 204 v~ald~~tG~~~w~~~v~~~~~~s~~~~~v-g~~~lv~~d~~~g~L~v~~l~sg~ 257 (794)
+...|..+++......-. ...+. .+.+- .+..+++.. ..+.+++-|+.+++
T Consensus 543 v~vwd~~~~~~~~~~~~h-~~~v~-~v~~spdg~~l~sg~-~Dg~i~iwd~~~~~ 594 (694)
T 3dm0_A 543 VKVWNLSNCKLRSTLAGH-TGYVS-TVAVSPDGSLCASGG-KDGVVLLWDLAEGK 594 (694)
T ss_dssp EEEEETTTCCEEEEECCC-SSCEE-EEEECTTSSEEEEEE-TTSBCEEEETTTTE
T ss_pred EEEEECCCCcEEEEEcCC-CCCEE-EEEEeCCCCEEEEEe-CCCeEEEEECCCCc
Confidence 788899888776544211 11111 12221 334666655 46889999998887
No 168
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=95.52 E-value=2.5 Score=42.98 Aligned_cols=110 Identities=15% Similarity=0.152 Sum_probs=66.4
Q ss_pred CCCEEEEEeCCCEEEEEECcCCccceEEEcC---cccceeeeeeee--CCEEEEEEccCCeEEEEeCCCCc---------
Q 003800 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVLG---INDVVDGIDIAL--GKYVITLSSDGSTLRAWNLPDGQ--------- 117 (794)
Q Consensus 52 ~~~~Vyv~t~~g~l~ALn~~tG~ivWR~~l~---~~~~i~~l~~~~--g~~~V~Vs~~g~~v~A~d~~tG~--------- 117 (794)
+++.+++++.+|.|.-.|..++...|+.... ....+..+.... ++..++.++.++.|+.||..+|+
T Consensus 22 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~ 101 (351)
T 3f3f_A 22 YGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWN 101 (351)
T ss_dssp SSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEE
T ss_pred CCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcc
Confidence 4667999999999999999998877765431 222344442222 24455556666799999999983
Q ss_pred EeEEEeccCccccCCcccccccccccc-CCeEEEEE-CCEEEEEECCCCcEE
Q 003800 118 MVWESFLRGSKHSKPLLLVPTNLKVDK-DSLILVSS-KGCLHAVSSIDGEIL 167 (794)
Q Consensus 118 llWe~~l~~~~~s~~~~~~~~~~~~~~-~~~V~V~~-~g~l~ald~~tG~~~ 167 (794)
.+.......... ..+.+.+ +. +..++..+ +|.+...|..+++..
T Consensus 102 ~~~~~~~~~~~v-~~~~~~~-----~~~~~~l~~~~~dg~v~iwd~~~~~~~ 147 (351)
T 3f3f_A 102 KLCTLNDSKGSL-YSVKFAP-----AHLGLKLACLGNDGILRLYDALEPSDL 147 (351)
T ss_dssp EEEEECCCSSCE-EEEEECC-----GGGCSEEEEEETTCEEEEEECSSTTCT
T ss_pred eeeeecccCCce-eEEEEcC-----CCCCcEEEEecCCCcEEEecCCChHHh
Confidence 444444333222 1111111 11 23344443 899999999888754
No 169
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=95.47 E-value=2.3 Score=44.25 Aligned_cols=186 Identities=15% Similarity=0.153 Sum_probs=98.1
Q ss_pred CCCEEEEEeCCCEEEEEECcCCccceEEEcCcccceeeeeeee------CCEEEEEEccCCeEEEEeCCCCcEeEEEecc
Q 003800 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIAL------GKYVITLSSDGSTLRAWNLPDGQMVWESFLR 125 (794)
Q Consensus 52 ~~~~Vyv~t~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~------g~~~V~Vs~~g~~v~A~d~~tG~llWe~~l~ 125 (794)
++..++.++.++.|...|.+. +.+-+. ......+..+.... +...++.++.++.++.||..+++..-+....
T Consensus 118 ~~~~l~s~s~D~~i~vwd~~~-~~~~~~-~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h 195 (319)
T 3frx_A 118 KASMIISGSRDKTIKVWTIKG-QCLATL-LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGH 195 (319)
T ss_dssp TSCEEEEEETTSCEEEEETTS-CEEEEE-CCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred CCCEEEEEeCCCeEEEEECCC-CeEEEE-eccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCC
Confidence 355688888999988888763 332221 22222222221111 1224444556789999999999887666544
Q ss_pred CccccCCccccccccccccCCeEEE-EE-CCEEEEEECCCCcEEEEEeccCcceeeeeEEEEecCCEEEEEEecCCceeE
Q 003800 126 GSKHSKPLLLVPTNLKVDKDSLILV-SS-KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFH 203 (794)
Q Consensus 126 ~~~~s~~~~~~~~~~~~~~~~~V~V-~~-~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~s~~~~~vyv~~~~g~~~~~ 203 (794)
.... ..+.+ ..++..++ .+ +|.+...|..+++.+.+.....+ ...+.. ..++...+.+..+ .
T Consensus 196 ~~~v-~~~~~-------sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~---v~~~~~-sp~~~~la~~~~~----~ 259 (319)
T 3frx_A 196 NSNI-NTLTA-------SPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDE---VFSLAF-SPNRYWLAAATAT----G 259 (319)
T ss_dssp CSCE-EEEEE-------CTTSSEEEEEETTCEEEEEETTTTEEEEEEECCSC---EEEEEE-CSSSSEEEEEETT----E
T ss_pred CCcE-EEEEE-------cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCc---EEEEEE-cCCCCEEEEEcCC----C
Confidence 3322 11111 11344444 43 89999999999999988875433 222322 2233444444333 3
Q ss_pred EEEEEcCCCceeeeeeeeccc---CccC---ceEEE-cCcEEEEEECCCCeEEEEEeecc
Q 003800 204 AYQINAMNGELLNHETAAFSG---GFVG---DVALV-SSDTLVTLDTTRSILVTVSFKNR 256 (794)
Q Consensus 204 v~ald~~tG~~~w~~~v~~~~---~~s~---~~~~v-g~~~lv~~d~~~g~L~v~~l~sg 256 (794)
+..++..++..+...+..... .... .+.+- .+..+++.. ..+.+++-++.++
T Consensus 260 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~-~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 260 IKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGY-TDNVIRVWQVMTA 318 (319)
T ss_dssp EEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEE-TTSCEEEEEEEEC
T ss_pred cEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEee-cCceEEEEEEeec
Confidence 455566666655444311110 0011 11111 334666665 3577777777654
No 170
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=95.45 E-value=3 Score=43.43 Aligned_cols=193 Identities=8% Similarity=0.083 Sum_probs=105.1
Q ss_pred CCCEEEEEeCC-----C-------EEEEEECcCCccceEEEcCccccee--eeeeeeCCEEEEEEccC-------CeEEE
Q 003800 52 GRKRVVVSTEE-----N-------VIASLDLRHGEIFWRHVLGINDVVD--GIDIALGKYVITLSSDG-------STLRA 110 (794)
Q Consensus 52 ~~~~Vyv~t~~-----g-------~l~ALn~~tG~ivWR~~l~~~~~i~--~l~~~~g~~~V~Vs~~g-------~~v~A 110 (794)
.++.||+.... + .+..+|+.++ .|+..-+-+..-. +. ...++.+++++|.. ..+..
T Consensus 55 ~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~--~W~~~~~~p~~r~~~~~-~~~~~~iyv~GG~~~~~~~~~~~~~~ 131 (318)
T 2woz_A 55 QQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSS--EWVGLPPLPSARCLFGL-GEVDDKIYVVAGKDLQTEASLDSVLC 131 (318)
T ss_dssp SSSCEEEEESSCC-------CCCBEEEEEETTTT--EEEECSCBSSCBCSCEE-EEETTEEEEEEEEBTTTCCEEEEEEE
T ss_pred ECCEEEEECCcccCccccCCCccccEEEEeCCCC--cEEECCCCCccccccce-EEECCEEEEEcCccCCCCcccceEEE
Confidence 46778876652 1 2888999887 5987533221111 22 23566677767642 35889
Q ss_pred EeCCCCcEeEEEeccCccccCCccccccccccccCCeEEEEEC--------CEEEEEECCCCcEEEEEeccCcce-eeee
Q 003800 111 WNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSSK--------GCLHAVSSIDGEILWTRDFAAESV-EVQQ 181 (794)
Q Consensus 111 ~d~~tG~llWe~~l~~~~~s~~~~~~~~~~~~~~~~~V~V~~~--------g~l~ald~~tG~~~W~~~~~~~~~-~~~~ 181 (794)
||+.++ .|+.....+.. ..... ....++.+++..+ ..+..+|..++ .|+.-.+.+.- ....
T Consensus 132 yd~~~~--~W~~~~~~p~~-----r~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~ 201 (318)
T 2woz_A 132 YDPVAA--KWSEVKNLPIK-----VYGHN-VISHNGMIYCLGGKTDDKKCTNRVFIYNPKKG--DWKDLAPMKTPRSMFG 201 (318)
T ss_dssp EETTTT--EEEEECCCSSC-----EESCE-EEEETTEEEEECCEESSSCBCCCEEEEETTTT--EEEEECCCSSCCBSCE
T ss_pred EeCCCC--CEeECCCCCCc-----ccccE-EEEECCEEEEEcCCCCCCCccceEEEEcCCCC--EEEECCCCCCCcccce
Confidence 998876 58865322211 11111 1112567777531 35899998876 48765433321 0111
Q ss_pred EEEEecCCEEEEEEecCCc--eeEEEEEEcCCCceeeeeeeecccCccC-ceEEEcCcEEEEEEC-------------CC
Q 003800 182 VIQLDESDQIYVVGYAGSS--QFHAYQINAMNGELLNHETAAFSGGFVG-DVALVSSDTLVTLDT-------------TR 245 (794)
Q Consensus 182 ~v~s~~~~~vyv~~~~g~~--~~~v~ald~~tG~~~w~~~v~~~~~~s~-~~~~vg~~~lv~~d~-------------~~ 245 (794)
+ ...++.+|+++...+. .-.+..+|+.+++ |+..-..|..... .++..++.+++..-. ..
T Consensus 202 ~--~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~ 277 (318)
T 2woz_A 202 V--AIHKGKIVIAGGVTEDGLSASVEAFDLKTNK--WEVMTEFPQERSSISLVSLAGSLYAIGGFAMIQLESKEFAPTEV 277 (318)
T ss_dssp E--EEETTEEEEEEEEETTEEEEEEEEEETTTCC--EEECCCCSSCCBSCEEEEETTEEEEECCBCCBC----CCBCCBC
T ss_pred E--EEECCEEEEEcCcCCCCccceEEEEECCCCe--EEECCCCCCcccceEEEEECCEEEEECCeeccCCCCceecccee
Confidence 2 2357899988743221 2367889998874 7775444544433 333345444444211 12
Q ss_pred CeEEEEEeecceeeeEEE
Q 003800 246 SILVTVSFKNRKIAFQET 263 (794)
Q Consensus 246 g~L~v~~l~sg~~~~~~~ 263 (794)
..+++.|+++++ ...+
T Consensus 278 ~~v~~yd~~~~~--W~~~ 293 (318)
T 2woz_A 278 NDIWKYEDDKKE--WAGM 293 (318)
T ss_dssp CCEEEEETTTTE--EEEE
T ss_pred eeEEEEeCCCCE--ehhh
Confidence 356777777765 5444
No 171
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=95.42 E-value=1.1 Score=47.86 Aligned_cols=70 Identities=9% Similarity=0.024 Sum_probs=45.4
Q ss_pred CCCEEEEEe--CCCEEEEEECcCCccceEEEcCcccceeeeeeeeCCEEEEEEccCCeEEEEeCCCCcEeEEEec
Q 003800 52 GRKRVVVST--EENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFL 124 (794)
Q Consensus 52 ~~~~Vyv~t--~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~l 124 (794)
++..+.++| .++.|.-.|+++|+.+....-.. .+..+...-++..++.+++ +.++.|+..+|+.+-+...
T Consensus 144 Dg~~la~as~~~d~~i~iwd~~~~~~~~~~~~~~--~V~~v~fspdg~~l~s~s~-~~~~~~~~~~~~~~~~~~~ 215 (365)
T 4h5i_A 144 EGTVAAIASSKVPAIMRIIDPSDLTEKFEIETRG--EVKDLHFSTDGKVVAYITG-SSLEVISTVTGSCIARKTD 215 (365)
T ss_dssp TSSCEEEEESCSSCEEEEEETTTTEEEEEEECSS--CCCEEEECTTSSEEEEECS-SCEEEEETTTCCEEEEECC
T ss_pred CCCEEEEEECCCCCEEEEeECCCCcEEEEeCCCC--ceEEEEEccCCceEEeccc-eeEEEEEeccCcceeeeec
Confidence 445566666 47999999999999988765433 3444422233344443443 5688888889987765543
No 172
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=95.41 E-value=3.2 Score=45.39 Aligned_cols=149 Identities=12% Similarity=0.075 Sum_probs=80.9
Q ss_pred CCEEEEEeCC-CEEEEEECcCCccceEEEcCcccceeeeeeeeCCEEEEEEcc-CC-eEEEEeCCCCcEeEEE-eccCcc
Q 003800 53 RKRVVVSTEE-NVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSD-GS-TLRAWNLPDGQMVWES-FLRGSK 128 (794)
Q Consensus 53 ~~~Vyv~t~~-g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~~-g~-~v~A~d~~tG~llWe~-~l~~~~ 128 (794)
+++||++... +.|..+|+++|.+.--...... .. +.....++.++++.. ++ .++.||..++...-.. ......
T Consensus 141 ~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~--~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~ 217 (409)
T 3hrp_A 141 NNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKG--GK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTF 217 (409)
T ss_dssp TTEEEEEETTTTEEEEEETTTTEEEEEEETCCB--CB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTS
T ss_pred CCCEEEEecCCCcEEEEECCCCEEEEeeccCCC--Cc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchh
Confidence 6779988864 7899999998876433222111 11 212234445665554 33 8999999877653222 111101
Q ss_pred ccCCcccccccccccc-CCeEEEE-ECCEEEEEECCCCcEEEEEecc---Ccceeee-eEEEEecCCEEEEEEecCCcee
Q 003800 129 HSKPLLLVPTNLKVDK-DSLILVS-SKGCLHAVSSIDGEILWTRDFA---AESVEVQ-QVIQLDESDQIYVVGYAGSSQF 202 (794)
Q Consensus 129 ~s~~~~~~~~~~~~~~-~~~V~V~-~~g~l~ald~~tG~~~W~~~~~---~~~~~~~-~~v~s~~~~~vyv~~~~g~~~~ 202 (794)
. ..+.-+ +.+. ++.+|+. .+++++++|..+|......... .....|. .+.....++.+|+.....+
T Consensus 218 ~-~~p~~i----av~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~--- 289 (409)
T 3hrp_A 218 S-GKIGAV----ALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLS--- 289 (409)
T ss_dssp C-SCCCBC----EECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTT---
T ss_pred c-CCcEEE----EEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCC---
Confidence 1 011111 2333 5677775 3789999999988754432111 1111123 3432233688997654433
Q ss_pred EEEEEEcCCCc
Q 003800 203 HAYQINAMNGE 213 (794)
Q Consensus 203 ~v~ald~~tG~ 213 (794)
++..+|.. |+
T Consensus 290 ~I~~~~~~-g~ 299 (409)
T 3hrp_A 290 SVYKITPD-GE 299 (409)
T ss_dssp EEEEECTT-CC
T ss_pred EEEEEecC-CC
Confidence 67888764 44
No 173
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=95.40 E-value=2 Score=46.64 Aligned_cols=182 Identities=7% Similarity=-0.110 Sum_probs=105.0
Q ss_pred CCCEEEEEeCC-C----EEEEEECcCCccceEEEcCcccceeeeeeeeCCEEEEEEc----------cCCeEEEEeCCCC
Q 003800 52 GRKRVVVSTEE-N----VIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSS----------DGSTLRAWNLPDG 116 (794)
Q Consensus 52 ~~~~Vyv~t~~-g----~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~----------~g~~v~A~d~~tG 116 (794)
...++||..+. + .|..+|+.|++++=+....... ++.+.-++..+||+. .++.|..||+.++
T Consensus 30 ~~~~~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG~~P---~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~ 106 (368)
T 1mda_H 30 ISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS---LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTF 106 (368)
T ss_dssp CTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC---EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTC
T ss_pred CCCeEEEECCccCCccceEEEEECCCCeEEEEEeCCCCC---ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCC
Confidence 35789999874 4 8899999999999777765542 343344556677764 2468999999999
Q ss_pred cEeEEEeccCcc----ccCCccccccccccccCCeEEEEE---CCEEEE--EECCCCcEEEEEeccCcceeeeeEEEEec
Q 003800 117 QMVWESFLRGSK----HSKPLLLVPTNLKVDKDSLILVSS---KGCLHA--VSSIDGEILWTRDFAAESVEVQQVIQLDE 187 (794)
Q Consensus 117 ~llWe~~l~~~~----~s~~~~~~~~~~~~~~~~~V~V~~---~g~l~a--ld~~tG~~~W~~~~~~~~~~~~~~v~s~~ 187 (794)
+++.+..+.++. ...+..+.- ..+ ++.+||.. +..+.. +|..+ +-+.+.+... .+. ..
T Consensus 107 ~vv~~I~v~~~~~~~~g~~P~~ia~---SpD-Gk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~~----~~~--p~ 173 (368)
T 1mda_H 107 LPIADIELPDAPRFSVGPRVHIIGN---CAS-SACLLFFLFGSSAAAGLSVPGASD---DQLTKSASCF----HIH--PG 173 (368)
T ss_dssp CEEEEEEETTSCSCCBSCCTTSEEE---CTT-SSCEEEEECSSSCEEEEEETTTEE---EEEEECSSCC----CCE--EE
T ss_pred CEEEEEECCCccccccCCCcceEEE---cCC-CCEEEEEccCCCCeEEEEEEchhh---ceEEECCCce----EEc--cC
Confidence 999999876210 000111110 223 45677764 456777 88877 3344333211 111 23
Q ss_pred CCEEEEE-EecCCceeEEEEEEcCC-----CceeeeeeeecccCccCce-EEEcCcEEEEEECCCCeEEEEEeecce
Q 003800 188 SDQIYVV-GYAGSSQFHAYQINAMN-----GELLNHETAAFSGGFVGDV-ALVSSDTLVTLDTTRSILVTVSFKNRK 257 (794)
Q Consensus 188 ~~~vyv~-~~~g~~~~~v~ald~~t-----G~~~w~~~v~~~~~~s~~~-~~vg~~~lv~~d~~~g~L~v~~l~sg~ 257 (794)
+...|+. +.+| ++..+|..+ |+..++.+ ....+...+ ....++.+++.+. +.++++|+.++.
T Consensus 174 g~~~~~~~~~dg----~~~~vd~~~~~~~~~~v~~~~t--~~i~vg~~P~~~~~~~~~~~vs~--~~V~viD~~~~~ 242 (368)
T 1mda_H 174 AAATHYLGSCPA----SLAASDLAAAPAAAGIVGAQCT--GAQNCSSQAAQANYPGMLVWAVA--SSILQGDIPAAG 242 (368)
T ss_dssp ETTEEECCCCTT----SCEEEECCSSCCCCEECCCCSC--TTSCBCSCCEEETTTTEEEECBS--SCCEEEECCSSC
T ss_pred CCeEEEEEcCCC----CEEEEECccccccCCeEEEEee--eeeeCCCCccccccCCEEEEEcC--CEEEEEECCCCc
Confidence 4445542 2233 467788887 77776432 000110111 1223344555553 789999987643
No 174
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=95.37 E-value=2.8 Score=42.70 Aligned_cols=187 Identities=10% Similarity=0.083 Sum_probs=95.4
Q ss_pred CEEEEEeCCCEEEEEECcCCccceE-EEcCccc---ceeeeeeeeCCEEEEEEcc-C---------------CeEEEEeC
Q 003800 54 KRVVVSTEENVIASLDLRHGEIFWR-HVLGIND---VVDGIDIALGKYVITLSSD-G---------------STLRAWNL 113 (794)
Q Consensus 54 ~~Vyv~t~~g~l~ALn~~tG~ivWR-~~l~~~~---~i~~l~~~~g~~~V~Vs~~-g---------------~~v~A~d~ 113 (794)
+++|+++..+.|..+|++ |+...- ....... .+..+. ...++.++++.. + +.|+.+|.
T Consensus 83 g~l~v~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~-~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 160 (314)
T 1pjx_A 83 NQLFVADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCA-FDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTT 160 (314)
T ss_dssp SEEEEEETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEE-ECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECT
T ss_pred CcEEEEECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEE-ECCCCCEEEEecCcccccccccccccCCCCeEEEECC
Confidence 789999987789999998 876422 1111110 122331 223344555442 2 47999998
Q ss_pred CCCcEeEEEeccCccccCCccccccccccccCC-eEEEEE--CCEEEEEECC-CCcE----EEEEeccCcc-eeeeeEEE
Q 003800 114 PDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDS-LILVSS--KGCLHAVSSI-DGEI----LWTRDFAAES-VEVQQVIQ 184 (794)
Q Consensus 114 ~tG~llWe~~l~~~~~s~~~~~~~~~~~~~~~~-~V~V~~--~g~l~ald~~-tG~~----~W~~~~~~~~-~~~~~~v~ 184 (794)
. |+........... ..+.+.. ..+.++ .+++.. ++.|+.+|.. +|+. .+. ..+... ..+..+.
T Consensus 161 ~-g~~~~~~~~~~~~--~~i~~~~---~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~-~~~~~~~~~p~~i~- 232 (314)
T 1pjx_A 161 D-GQMIQVDTAFQFP--NGIAVRH---MNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWG-HIPGTHEGGADGMD- 232 (314)
T ss_dssp T-SCEEEEEEEESSE--EEEEEEE---CTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEE-ECCCCSSCEEEEEE-
T ss_pred C-CCEEEeccCCCCc--ceEEEec---ccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEE-ECCCCCCCCCCceE-
Confidence 6 8765432211111 1111110 001244 466653 6889999876 6653 222 122111 1133332
Q ss_pred EecCCEEEEEEecCCceeEEEEEEcCCCceeeeeeeecccCccCceEEE-cCcEEEEEECCCCeEEEEEeec
Q 003800 185 LDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAFSGGFVGDVALV-SSDTLVTLDTTRSILVTVSFKN 255 (794)
Q Consensus 185 s~~~~~vyv~~~~g~~~~~v~ald~~tG~~~w~~~v~~~~~~s~~~~~v-g~~~lv~~d~~~g~L~v~~l~s 255 (794)
...++.+|+....++ .+..+|+.+|+.+.... .+......+.+- .++.+++.+..++.+..+++..
T Consensus 233 ~d~~G~l~v~~~~~~---~i~~~d~~~g~~~~~~~--~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 233 FDEDNNLLVANWGSS---HIEVFGPDGGQPKMRIR--CPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EBTTCCEEEEEETTT---EEEEECTTCBSCSEEEE--CSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred ECCCCCEEEEEcCCC---EEEEEcCCCCcEeEEEe--CCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 235678898765433 78999999898775543 221111112221 2233444554455677776654
No 175
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=95.35 E-value=1.5 Score=47.75 Aligned_cols=186 Identities=12% Similarity=-0.017 Sum_probs=98.0
Q ss_pred CEEEEEeCCCEEEEEECcC----------CccceEEEcCcccceeeeeee-eCCEEEEEEccCCeEEEEeCCCCcE-eEE
Q 003800 54 KRVVVSTEENVIASLDLRH----------GEIFWRHVLGINDVVDGIDIA-LGKYVITLSSDGSTLRAWNLPDGQM-VWE 121 (794)
Q Consensus 54 ~~Vyv~t~~g~l~ALn~~t----------G~ivWR~~l~~~~~i~~l~~~-~g~~~V~Vs~~g~~v~A~d~~tG~l-lWe 121 (794)
..+++++.+|.|...|..+ ++...+..-... .+.++... .+.+.++.++.++.|+.||..++.. .+.
T Consensus 142 ~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 220 (430)
T 2xyi_A 142 CVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQK-EGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRV 220 (430)
T ss_dssp EEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSS-CCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGE
T ss_pred cEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCC-CeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCce
Confidence 4577788899999999887 566655543222 23333222 2333566566678999999998543 222
Q ss_pred ------EeccCccccCCccccccccccccCCeEEE-E-ECCEEEEEECCCC---cEEEEEeccCcceeeeeEEEEecCCE
Q 003800 122 ------SFLRGSKHSKPLLLVPTNLKVDKDSLILV-S-SKGCLHAVSSIDG---EILWTRDFAAESVEVQQVIQLDESDQ 190 (794)
Q Consensus 122 ------~~l~~~~~s~~~~~~~~~~~~~~~~~V~V-~-~~g~l~ald~~tG---~~~W~~~~~~~~~~~~~~v~s~~~~~ 190 (794)
....... ...+. .... ++.+++ . .+|.|+..|..++ +..+........ +..+.....+..
T Consensus 221 ~~~~~~~~~h~~~----v~~v~--~~p~-~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~--v~~i~~~p~~~~ 291 (430)
T 2xyi_A 221 IDAKNIFTGHTAV----VEDVA--WHLL-HESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAE--VNCLSFNPYSEF 291 (430)
T ss_dssp EECSEEECCCSSC----EEEEE--ECSS-CTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSC--EEEEEECSSCTT
T ss_pred eccceeecCCCCC----EeeeE--EeCC-CCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCC--eEEEEeCCCCCC
Confidence 1111111 11111 0111 234444 3 3899999999887 566666543322 222322223444
Q ss_pred EEEEEecCCceeEEEEEEcCC-CceeeeeeeecccCccCceEEE--cCcEEEEEECCCCeEEEEEeec
Q 003800 191 IYVVGYAGSSQFHAYQINAMN-GELLNHETAAFSGGFVGDVALV--SSDTLVTLDTTRSILVTVSFKN 255 (794)
Q Consensus 191 vyv~~~~g~~~~~v~ald~~t-G~~~w~~~v~~~~~~s~~~~~v--g~~~lv~~d~~~g~L~v~~l~s 255 (794)
+++.+...+ .+..+|..+ ++++..... ....+.. +.+- +..++++.. ..+.+.+.++.+
T Consensus 292 ~l~tg~~dg---~v~vwd~~~~~~~~~~~~~-h~~~v~~-i~~sp~~~~~l~s~~-~d~~i~iwd~~~ 353 (430)
T 2xyi_A 292 ILATGSADK---TVALWDLRNLKLKLHSFES-HKDEIFQ-VQWSPHNETILASSG-TDRRLHVWDLSK 353 (430)
T ss_dssp EEEEEETTS---EEEEEETTCTTSCSEEEEC-CSSCEEE-EEECSSCTTEEEEEE-TTSCCEEEEGGG
T ss_pred EEEEEeCCC---eEEEEeCCCCCCCeEEeec-CCCCEEE-EEECCCCCCEEEEEe-CCCcEEEEeCCC
Confidence 555444433 788899887 444433321 1111111 1111 223555554 457888888876
No 176
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=95.32 E-value=3.4 Score=43.36 Aligned_cols=194 Identities=10% Similarity=0.099 Sum_probs=94.8
Q ss_pred EEEEEeCCC------EEEEEECcCCccceEEEcCcccceeeeeeeeCCEEEEEEcc----CCeEEEEeC--CCCcEeEEE
Q 003800 55 RVVVSTEEN------VIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSD----GSTLRAWNL--PDGQMVWES 122 (794)
Q Consensus 55 ~Vyv~t~~g------~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~~----g~~v~A~d~--~tG~llWe~ 122 (794)
.+|+++..+ .++.+|+++|+....... .......+....++..+++++. .+.++.|+. .+|++.--.
T Consensus 15 ~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~-~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~ 93 (361)
T 3scy_A 15 TMLVGTYTSGNSKGIYTFRFNEETGESLPLSDA-EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLN 93 (361)
T ss_dssp EEEEEECCSSSCCEEEEEEEETTTCCEEEEEEE-ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEE
T ss_pred EEEEEeccCCCCCCEEEEEEeCCCCCEEEeecc-cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEee
Confidence 477776432 577889999998877766 2222223322333445555433 257876654 457654433
Q ss_pred eccCccccCCccccccccccccCCeEEEEE--CCEEEEEECCC-CcEE-----EEEeccCcc------eeeeeEEEEecC
Q 003800 123 FLRGSKHSKPLLLVPTNLKVDKDSLILVSS--KGCLHAVSSID-GEIL-----WTRDFAAES------VEVQQVIQLDES 188 (794)
Q Consensus 123 ~l~~~~~s~~~~~~~~~~~~~~~~~V~V~~--~g~l~ald~~t-G~~~-----W~~~~~~~~------~~~~~~v~s~~~ 188 (794)
...... ..+..+ ..+ ++.+++.. ++.+..++..+ |... .......+. ..+..+..+.++
T Consensus 94 ~~~~~~--~~p~~~----~~d-g~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg 166 (361)
T 3scy_A 94 TQKTMG--ADPCYL----TTN-GKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDG 166 (361)
T ss_dssp EEECSS--SCEEEE----EEC-SSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTS
T ss_pred EeccCC--CCcEEE----EEC-CCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCC
Confidence 332111 111111 222 45566653 77888888764 3221 111110110 001223222334
Q ss_pred CEEEEEEecCCceeEEEEEEcCCC----c-eeee---eeeecccCccC-ceEEE-cCcEEEEEECCCCeEEEEEeecce
Q 003800 189 DQIYVVGYAGSSQFHAYQINAMNG----E-LLNH---ETAAFSGGFVG-DVALV-SSDTLVTLDTTRSILVTVSFKNRK 257 (794)
Q Consensus 189 ~~vyv~~~~g~~~~~v~ald~~tG----~-~~w~---~~v~~~~~~s~-~~~~v-g~~~lv~~d~~~g~L~v~~l~sg~ 257 (794)
..+|+.+ .+...+.++.++..+| + .... .....+.+... .+.+- .+..+++.+...+.+.+.++.+|+
T Consensus 167 ~~l~~~~-~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~ 244 (361)
T 3scy_A 167 KYLLADD-LGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGM 244 (361)
T ss_dssp SEEEEEE-TTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTE
T ss_pred CEEEEEe-CCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCc
Confidence 4577654 3344566666776666 4 3221 11112211111 12222 334666677667889999999886
No 177
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=95.18 E-value=2 Score=44.67 Aligned_cols=197 Identities=10% Similarity=0.022 Sum_probs=105.1
Q ss_pred eeeeeccCCCEEEEEeC-----CCEEEEEECcCCccceEEEcCccccee-eeeeeeCCEEEEEEcc----C-----CeEE
Q 003800 45 VFHTQKTGRKRVVVSTE-----ENVIASLDLRHGEIFWRHVLGINDVVD-GIDIALGKYVITLSSD----G-----STLR 109 (794)
Q Consensus 45 ~f~~~~~~~~~Vyv~t~-----~g~l~ALn~~tG~ivWR~~l~~~~~i~-~l~~~~g~~~V~Vs~~----g-----~~v~ 109 (794)
..+.+...++.||+... .+.+.++|+.+++ |+..-..+..-. ...+..++.+++++|. . +.+.
T Consensus 16 ~~~~~~~~~~~i~v~GG~~~~~~~~~~~~d~~~~~--W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~ 93 (308)
T 1zgk_A 16 RGSHAPKVGRLIYTAGGYFRQSLSYLEAYNPSNGT--WLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALD 93 (308)
T ss_dssp -----CCCCCCEEEECCBSSSBCCCEEEEETTTTE--EEECCCCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEE
T ss_pred CCccccCCCCEEEEEeCcCCCCcceEEEEcCCCCe--EeECCCCCcccccceEEEECCEEEEECCCcCCCCCCeecceEE
Confidence 34444445677887665 3579999999885 997632221111 1112356666666664 1 3689
Q ss_pred EEeCCCCcEeEEEeccCccccCCccccccccccccCCeEEEEE-------CCEEEEEECCCCcEEEEEeccCccee-eee
Q 003800 110 AWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSS-------KGCLHAVSSIDGEILWTRDFAAESVE-VQQ 181 (794)
Q Consensus 110 A~d~~tG~llWe~~l~~~~~s~~~~~~~~~~~~~~~~~V~V~~-------~g~l~ald~~tG~~~W~~~~~~~~~~-~~~ 181 (794)
.||+.+++ |+..-..+.. ..... ....++.+++.. -..+..+|..++ .|+.-.+.+.-. ...
T Consensus 94 ~~d~~~~~--W~~~~~~p~~-----r~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~ 163 (308)
T 1zgk_A 94 CYNPMTNQ--WSPCAPMSVP-----RNRIG-VGVIDGHIYAVGGSHGCIHHNSVERYEPERD--EWHLVAPMLTRRIGVG 163 (308)
T ss_dssp EEETTTTE--EEECCCCSSC-----CBTCE-EEEETTEEEEECCEETTEECCCEEEEETTTT--EEEECCCCSSCCBSCE
T ss_pred EECCCCCe--EeECCCCCcC-----ccccE-EEEECCEEEEEcCCCCCcccccEEEECCCCC--eEeECCCCCccccceE
Confidence 99998874 8765322211 11100 111256677753 146888888776 577644332210 111
Q ss_pred EEEEecCCEEEEEEecCCc--eeEEEEEEcCCCceeeeeeeecccCccC-ceEEEcCcEEEEEECC----CCeEEEEEee
Q 003800 182 VIQLDESDQIYVVGYAGSS--QFHAYQINAMNGELLNHETAAFSGGFVG-DVALVSSDTLVTLDTT----RSILVTVSFK 254 (794)
Q Consensus 182 ~v~s~~~~~vyv~~~~g~~--~~~v~ald~~tG~~~w~~~v~~~~~~s~-~~~~vg~~~lv~~d~~----~g~L~v~~l~ 254 (794)
+ ...++.+|+++...+. .-.+..+|+.+. .|+..-..|..... .+.+.++.+++..-.. ...+.+.|+.
T Consensus 164 ~--~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~ 239 (308)
T 1zgk_A 164 V--AVLNRLLYAVGGFDGTNRLNSAECYYPERN--EWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVE 239 (308)
T ss_dssp E--EEETTEEEEECCBCSSCBCCCEEEEETTTT--EEEECCCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETT
T ss_pred E--EEECCEEEEEeCCCCCCcCceEEEEeCCCC--eEeeCCCCCCccccceEEEECCEEEEEeCCCCCCccceEEEEeCC
Confidence 2 2347899987643211 235888998876 57764344443333 2333354444443111 2457788887
Q ss_pred cce
Q 003800 255 NRK 257 (794)
Q Consensus 255 sg~ 257 (794)
+++
T Consensus 240 ~~~ 242 (308)
T 1zgk_A 240 TET 242 (308)
T ss_dssp TTE
T ss_pred CCc
Confidence 776
No 178
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=95.18 E-value=2.6 Score=43.35 Aligned_cols=189 Identities=13% Similarity=0.095 Sum_probs=102.3
Q ss_pred CCEEEEEeC-----CCEEEEEECcCCccceEEEcCccccee-eeeeeeCCEEEEEEccC-----CeEEEEeCCCCcEeEE
Q 003800 53 RKRVVVSTE-----ENVIASLDLRHGEIFWRHVLGINDVVD-GIDIALGKYVITLSSDG-----STLRAWNLPDGQMVWE 121 (794)
Q Consensus 53 ~~~Vyv~t~-----~g~l~ALn~~tG~ivWR~~l~~~~~i~-~l~~~~g~~~V~Vs~~g-----~~v~A~d~~tG~llWe 121 (794)
++.||+... .+.+.++|+.+++ |+..-+-+..-. ...+..++.++++||.. ..+..||+.+++ |+
T Consensus 15 ~~~i~v~GG~~~~~~~~~~~~d~~~~~--W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~--W~ 90 (302)
T 2xn4_A 15 PKLMVVVGGQAPKAIRSVECYDFKEER--WHQVAELPSRRCRAGMVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQ--WT 90 (302)
T ss_dssp CEEEEEECCBSSSBCCCEEEEETTTTE--EEEECCCSSCCBSCEEEEETTEEEEESCBCSSSBCCCEEEEETTTTE--EE
T ss_pred CCEEEEECCCCCCCCCcEEEEcCcCCc--EeEcccCCcccccceEEEECCEEEEEeCcCCCccccceEEECCCCCc--ee
Confidence 456666554 2568999999884 998643221111 11124566677767632 368999998775 87
Q ss_pred EeccCccccCCccccccccccccCCeEEEEE--C-----CEEEEEECCCCcEEEEEeccCcce-eeeeEEEEecCCEEEE
Q 003800 122 SFLRGSKHSKPLLLVPTNLKVDKDSLILVSS--K-----GCLHAVSSIDGEILWTRDFAAESV-EVQQVIQLDESDQIYV 193 (794)
Q Consensus 122 ~~l~~~~~s~~~~~~~~~~~~~~~~~V~V~~--~-----g~l~ald~~tG~~~W~~~~~~~~~-~~~~~v~s~~~~~vyv 193 (794)
..-..+.. ..... ....++.+++.. + ..+..+|..++ .|+.-.+.+.- ....+ ...++.+|+
T Consensus 91 ~~~~~p~~-----r~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~--~W~~~~~~p~~r~~~~~--~~~~~~iyv 160 (302)
T 2xn4_A 91 SVANMRDR-----RSTLG-AAVLNGLLYAVGGFDGSTGLSSVEAYNIKSN--EWFHVAPMNTRRSSVGV--GVVGGLLYA 160 (302)
T ss_dssp EECCCSSC-----CBSCE-EEEETTEEEEEEEECSSCEEEEEEEEETTTT--EEEEECCCSSCCBSCEE--EEETTEEEE
T ss_pred eCCCCCcc-----ccceE-EEEECCEEEEEcCCCCCccCceEEEEeCCCC--eEeecCCCCCcccCceE--EEECCEEEE
Confidence 65432211 01100 111256677753 2 36888888876 47765433221 01112 235788998
Q ss_pred EEecCCc----eeEEEEEEcCCCceeeeeeeecccCccC-ceEEEcCcEEEEEECC----CCeEEEEEeecce
Q 003800 194 VGYAGSS----QFHAYQINAMNGELLNHETAAFSGGFVG-DVALVSSDTLVTLDTT----RSILVTVSFKNRK 257 (794)
Q Consensus 194 ~~~~g~~----~~~v~ald~~tG~~~w~~~v~~~~~~s~-~~~~vg~~~lv~~d~~----~g~L~v~~l~sg~ 257 (794)
++...+. .-.+..+|+.++ .|+..-..|..... .+...++.+++..-.+ ...+.+.|+.+++
T Consensus 161 ~GG~~~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 231 (302)
T 2xn4_A 161 VGGYDVASRQCLSTVECYNATTN--EWTYIAEMSTRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNA 231 (302)
T ss_dssp ECCEETTTTEECCCEEEEETTTT--EEEEECCCSSCCBSCEEEEETTEEEEECCBSSSSBCCCEEEEETTTTE
T ss_pred EeCCCCCCCccccEEEEEeCCCC--cEEECCCCccccccccEEEECCEEEEECCCCCCcccceEEEEeCCCCC
Confidence 7643111 125788998876 47764444544443 2333354444443111 2357778877766
No 179
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=95.16 E-value=0.55 Score=55.83 Aligned_cols=192 Identities=14% Similarity=0.089 Sum_probs=99.5
Q ss_pred CCCEEEEEeCCCEEEEEECcCCccceEEEcCcc-cceeeeeeeeC--CEEEEEEccCCeEEEEeCCCCc--EeEEEeccC
Q 003800 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVLGIN-DVVDGIDIALG--KYVITLSSDGSTLRAWNLPDGQ--MVWESFLRG 126 (794)
Q Consensus 52 ~~~~Vyv~t~~g~l~ALn~~tG~ivWR~~l~~~-~~i~~l~~~~g--~~~V~Vs~~g~~v~A~d~~tG~--llWe~~l~~ 126 (794)
+++.+++++.+|.|.-.|..++...-...+... ..+..+..... +..++.++.++.|+.||..+|+ .........
T Consensus 20 dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~ 99 (753)
T 3jro_A 20 YGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHS 99 (753)
T ss_dssp SSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCS
T ss_pred CCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCC
Confidence 356788999999999999885543333344322 33444422222 3455545556799999999997 444443332
Q ss_pred ccccCCcccccccccccc-CCeEEEEE-CCEEEEEECCCCcE--EEEEeccCcceeeeeEEEEe-------------cCC
Q 003800 127 SKHSKPLLLVPTNLKVDK-DSLILVSS-KGCLHAVSSIDGEI--LWTRDFAAESVEVQQVIQLD-------------ESD 189 (794)
Q Consensus 127 ~~~s~~~~~~~~~~~~~~-~~~V~V~~-~g~l~ald~~tG~~--~W~~~~~~~~~~~~~~v~s~-------------~~~ 189 (794)
... ..+.+. .+. +..+++.+ +|.+...|..++.. .......... ...+.... .+.
T Consensus 100 ~~V-~~v~~s-----p~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~--v~~l~~~p~~~~~~~~~~~~~d~~ 171 (753)
T 3jro_A 100 ASV-NSVQWA-----PHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIG--VNSASWAPATIEEDGEHNGTKESR 171 (753)
T ss_dssp SCE-EEEEEC-----CGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSC--EEEEEECCCC---------CGGGC
T ss_pred CCe-EEEEEC-----CCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCc--eEEEEecCcccccccccccCCCCC
Confidence 222 111111 111 23344443 89999999887732 2222221111 11121111 233
Q ss_pred EEEEEEecCCceeEEEEEEcCCCceeeeeeeecc---cCccCceEEE-c---CcEEEEEECCCCeEEEEEeecce
Q 003800 190 QIYVVGYAGSSQFHAYQINAMNGELLNHETAAFS---GGFVGDVALV-S---SDTLVTLDTTRSILVTVSFKNRK 257 (794)
Q Consensus 190 ~vyv~~~~g~~~~~v~ald~~tG~~~w~~~v~~~---~~~s~~~~~v-g---~~~lv~~d~~~g~L~v~~l~sg~ 257 (794)
.++..+.+| .+..+|..+|...+....... ..+. .+.+- . +..+++.+ ..|.+.+-|+.+++
T Consensus 172 ~l~sgs~dg----~I~iwd~~~~~~~~~~~~~~~~h~~~V~-~l~~sp~~~~~~~l~s~s-~Dg~I~iwd~~~~~ 240 (753)
T 3jro_A 172 KFVTGGADN----LVKIWKYNSDAQTYVLESTLEGHSDWVR-DVAWSPTVLLRSYLASVS-QDRTCIIWTQDNEQ 240 (753)
T ss_dssp CEEEEETTS----CEEEEEEETTTTEEEEEEEECCCSSCEE-EEEECCCCSSSEEEEEEE-SSSCEEEEEESSSS
T ss_pred EEEEEECCC----eEEEEeccCCcccceeeeeecCCCCcEE-EEEeccCCCCCCEEEEEe-cCCEEEEecCCCCC
Confidence 444444444 577778877765544322211 1111 11121 2 45666665 45889999998864
No 180
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=95.11 E-value=3.6 Score=42.42 Aligned_cols=189 Identities=13% Similarity=0.080 Sum_probs=106.7
Q ss_pred CCEEEEEeC-----CCEEEEEECcCCccceEEEcCccccee-eeeeeeCCEEEEEEccC------CeEEEEeCCCCcEeE
Q 003800 53 RKRVVVSTE-----ENVIASLDLRHGEIFWRHVLGINDVVD-GIDIALGKYVITLSSDG------STLRAWNLPDGQMVW 120 (794)
Q Consensus 53 ~~~Vyv~t~-----~g~l~ALn~~tG~ivWR~~l~~~~~i~-~l~~~~g~~~V~Vs~~g------~~v~A~d~~tG~llW 120 (794)
++.||+... .+.+..+|+.++ .|+..-+-+..-. ......++.+++++|.+ ..+..||+.+++ |
T Consensus 55 ~~~lyv~GG~~~~~~~~~~~~d~~~~--~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~--W 130 (306)
T 3ii7_A 55 DNVVYILGGSQLFPIKRMDCYNVVKD--SWYSKLGPPTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTES--W 130 (306)
T ss_dssp TTEEEEECCBSSSBCCEEEEEETTTT--EEEEEECCSSCCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTE--E
T ss_pred CCEEEEEeCCCCCCcceEEEEeCCCC--eEEECCCCCccccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCc--e
Confidence 778888765 368999999988 5987643331111 11124566666667642 469999998875 8
Q ss_pred EEeccCccccCCccccccccccccCCeEEEEE-----------CCEEEEEECCCCcEEEEEeccCcce-eeeeEEEEecC
Q 003800 121 ESFLRGSKHSKPLLLVPTNLKVDKDSLILVSS-----------KGCLHAVSSIDGEILWTRDFAAESV-EVQQVIQLDES 188 (794)
Q Consensus 121 e~~l~~~~~s~~~~~~~~~~~~~~~~~V~V~~-----------~g~l~ald~~tG~~~W~~~~~~~~~-~~~~~v~s~~~ 188 (794)
+.....+.. ..... ....++.+++.. -..+..+|..++ .|+.-.+.+.- ....+ ...+
T Consensus 131 ~~~~~~p~~-----r~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~--~~~~ 200 (306)
T 3ii7_A 131 HTKPSMLTQ-----RCSHG-MVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATE--TWTELCPMIEARKNHGL--VFVK 200 (306)
T ss_dssp EEECCCSSC-----CBSCE-EEEETTEEEEECCEESCTTTCEECCCEEEEETTTT--EEEEECCCSSCCBSCEE--EEET
T ss_pred EeCCCCcCC-----cceeE-EEEECCEEEEECCCCCCCCcccccceEEEeCCCCC--eEEECCCccchhhcceE--EEEC
Confidence 765332211 11100 112256777753 234889998887 68765443321 01112 2357
Q ss_pred CEEEEEEecCCc--eeEEEEEEcCCCceeeeeeeecccCccC-ceEEEcCcEEEEEEC----CCCeEEEEEeecce
Q 003800 189 DQIYVVGYAGSS--QFHAYQINAMNGELLNHETAAFSGGFVG-DVALVSSDTLVTLDT----TRSILVTVSFKNRK 257 (794)
Q Consensus 189 ~~vyv~~~~g~~--~~~v~ald~~tG~~~w~~~v~~~~~~s~-~~~~vg~~~lv~~d~----~~g~L~v~~l~sg~ 257 (794)
+.+|+++...+. .-.+.++|+.+++ |+..-..|..... .+...++.+++..-. ....+.+.|+++++
T Consensus 201 ~~i~v~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~ 274 (306)
T 3ii7_A 201 DKIFAVGGQNGLGGLDNVEYYDIKLNE--WKMVSPMPWKGVTVKCAAVGSIVYVLAGFQGVGRLGHILEYNTETDK 274 (306)
T ss_dssp TEEEEECCEETTEEBCCEEEEETTTTE--EEECCCCSCCBSCCEEEEETTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred CEEEEEeCCCCCCCCceEEEeeCCCCc--EEECCCCCCCccceeEEEECCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence 889987643211 1357899998874 7765444544433 333345555554321 12457778887776
No 181
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=95.11 E-value=0.65 Score=50.55 Aligned_cols=66 Identities=8% Similarity=-0.117 Sum_probs=45.1
Q ss_pred ccCCCEEEEEe----------CCCEEEEEECcCCccceEEEcCcc------cceeeeeeeeCCEEEEEEcc--CCeEEE-
Q 003800 50 KTGRKRVVVST----------EENVIASLDLRHGEIFWRHVLGIN------DVVDGIDIALGKYVITLSSD--GSTLRA- 110 (794)
Q Consensus 50 ~~~~~~Vyv~t----------~~g~l~ALn~~tG~ivWR~~l~~~------~~i~~l~~~~g~~~V~Vs~~--g~~v~A- 110 (794)
+.+.+.+|+++ ..+.|..+|+.|++++.+..++.. ....++.+.-++..++|+.. +..+..
T Consensus 73 spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~ 152 (368)
T 1mda_H 73 GHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLS 152 (368)
T ss_dssp CTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEE
T ss_pred CCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEE
Confidence 34577899997 368999999999999999887621 01123323345556776642 457888
Q ss_pred -EeCCC
Q 003800 111 -WNLPD 115 (794)
Q Consensus 111 -~d~~t 115 (794)
+|+.+
T Consensus 153 ~iD~~t 158 (368)
T 1mda_H 153 VPGASD 158 (368)
T ss_dssp ETTTEE
T ss_pred EEchhh
Confidence 89877
No 182
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=95.10 E-value=2.9 Score=43.18 Aligned_cols=189 Identities=9% Similarity=0.049 Sum_probs=104.1
Q ss_pred CCEEEEEeC---CCEEEEEECcCCccceEEEcCccccee-eeeeeeCCEEEEEEccC----CeEEEEeCCCCcEeEEEec
Q 003800 53 RKRVVVSTE---ENVIASLDLRHGEIFWRHVLGINDVVD-GIDIALGKYVITLSSDG----STLRAWNLPDGQMVWESFL 124 (794)
Q Consensus 53 ~~~Vyv~t~---~g~l~ALn~~tG~ivWR~~l~~~~~i~-~l~~~~g~~~V~Vs~~g----~~v~A~d~~tG~llWe~~l 124 (794)
.+.||+... .+.+.++|+.+++ |+..-+.+..-. ...+..++.++++||.+ ..+..+|+.++ .|+...
T Consensus 11 ~~~l~~~GG~~~~~~~~~~d~~~~~--W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~d~~~~--~W~~~~ 86 (306)
T 3ii7_A 11 HDYRIALFGGSQPQSCRYFNPKDYS--WTDIRCPFEKRRDAACVFWDNVVYILGGSQLFPIKRMDCYNVVKD--SWYSKL 86 (306)
T ss_dssp CCEEEEEECCSSTTSEEEEETTTTE--EEECCCCSCCCBSCEEEEETTEEEEECCBSSSBCCEEEEEETTTT--EEEEEE
T ss_pred cceEEEEeCCCCCceEEEecCCCCC--EecCCCCCcccceeEEEEECCEEEEEeCCCCCCcceEEEEeCCCC--eEEECC
Confidence 456666554 4689999999985 997543221111 11124566666667643 67999999887 587553
Q ss_pred cCccccCCccccccccccccCCeEEEEEC--------CEEEEEECCCCcEEEEEeccCcce-eeeeEEEEecCCEEEEEE
Q 003800 125 RGSKHSKPLLLVPTNLKVDKDSLILVSSK--------GCLHAVSSIDGEILWTRDFAAESV-EVQQVIQLDESDQIYVVG 195 (794)
Q Consensus 125 ~~~~~s~~~~~~~~~~~~~~~~~V~V~~~--------g~l~ald~~tG~~~W~~~~~~~~~-~~~~~v~s~~~~~vyv~~ 195 (794)
..+.. ..... ....++.+++..+ ..+..+|..++ .|+.-.+.+.- ....+ ...++.+|+++
T Consensus 87 ~~p~~-----r~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~--~W~~~~~~p~~r~~~~~--~~~~~~iyv~G 156 (306)
T 3ii7_A 87 GPPTP-----RDSLA-ACAAEGKIYTSGGSEVGNSALYLFECYDTRTE--SWHTKPSMLTQRCSHGM--VEANGLIYVCG 156 (306)
T ss_dssp CCSSC-----CBSCE-EEEETTEEEEECCBBTTBSCCCCEEEEETTTT--EEEEECCCSSCCBSCEE--EEETTEEEEEC
T ss_pred CCCcc-----cccee-EEEECCEEEEECCCCCCCcEeeeEEEEeCCCC--ceEeCCCCcCCcceeEE--EEECCEEEEEC
Confidence 22211 11100 1112567777632 35889998876 48765433321 01112 23588999876
Q ss_pred ecCCc------eeEEEEEEcCCCceeeeeeeecccCccC-ceEEEcCcEEEEE--ECC--CCeEEEEEeecce
Q 003800 196 YAGSS------QFHAYQINAMNGELLNHETAAFSGGFVG-DVALVSSDTLVTL--DTT--RSILVTVSFKNRK 257 (794)
Q Consensus 196 ~~g~~------~~~v~ald~~tG~~~w~~~v~~~~~~s~-~~~~vg~~~lv~~--d~~--~g~L~v~~l~sg~ 257 (794)
...+. .-.+..+|+.++ .|+..-..|..... .++..++.+++.. +.. ...+.+.|+.+++
T Consensus 157 G~~~~~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~ 227 (306)
T 3ii7_A 157 GSLGNNVSGRVLNSCEVYDPATE--TWTELCPMIEARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNE 227 (306)
T ss_dssp CEESCTTTCEECCCEEEEETTTT--EEEEECCCSSCCBSCEEEEETTEEEEECCEETTEEBCCEEEEETTTTE
T ss_pred CCCCCCCcccccceEEEeCCCCC--eEEECCCccchhhcceEEEECCEEEEEeCCCCCCCCceEEEeeCCCCc
Confidence 42111 235889999887 57765444544444 2333344444432 110 1357777777765
No 183
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=95.09 E-value=1.9 Score=52.53 Aligned_cols=190 Identities=11% Similarity=0.129 Sum_probs=107.3
Q ss_pred CCCEEEEEeCCCEEEEEECcCCccceEEEcCcccceeeeeeeeCCEEEEEEccCCeEEEEeCCCCcEeEEEeccCccccC
Q 003800 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSK 131 (794)
Q Consensus 52 ~~~~Vyv~t~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~l~~~~~s~ 131 (794)
++..+.+++.+|.|.-.|..+++..-+ +.....+..+....++.++. ++.++.|+.||..+|+.+-.........
T Consensus 28 dg~~lAsgs~Dg~I~lw~~~~~~~~~~--~~~~~~V~~l~fspg~~L~S-~s~D~~v~lWd~~~~~~~~~~~~~~~V~-- 102 (902)
T 2oaj_A 28 TQNLLAIATVTGEVHIYGQQQVEVVIK--LEDRSAIKEMRFVKGIYLVV-INAKDTVYVLSLYSQKVLTTVFVPGKIT-- 102 (902)
T ss_dssp TTTEEEEEETTSEEEEECSTTCEEEEE--CSSCCCEEEEEEETTTEEEE-EETTCEEEEEETTTCSEEEEEECSSCEE--
T ss_pred CCCEEEEEeCCCEEEEEeCCCcEEEEE--cCCCCCEEEEEEcCCCEEEE-EECcCeEEEEECCCCcEEEEEcCCCCEE--
Confidence 466788999999999999988876544 33333344443233443444 4456799999999999988776443221
Q ss_pred CccccccccccccCCeEEEEE-CCEEEEEECCCCcEE-EEE-------eccC-cceeeeeEEEEecCCEEEEEEecCCce
Q 003800 132 PLLLVPTNLKVDKDSLILVSS-KGCLHAVSSIDGEIL-WTR-------DFAA-ESVEVQQVIQLDESDQIYVVGYAGSSQ 201 (794)
Q Consensus 132 ~~~~~~~~~~~~~~~~V~V~~-~g~l~ald~~tG~~~-W~~-------~~~~-~~~~~~~~v~s~~~~~vyv~~~~g~~~ 201 (794)
.+.+ ..+ ++.+++.+ +|.+...|..+|+.. +.. .... .......+.....++..++++...+
T Consensus 103 ~v~~-----sp~-g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg-- 174 (902)
T 2oaj_A 103 SIDT-----DAS-LDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYV-- 174 (902)
T ss_dssp EEEC-----CTT-CSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSC--
T ss_pred EEEE-----CCC-CCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCC--
Confidence 1111 112 34455554 899999999998764 221 0000 0001112211111223444443332
Q ss_pred eEEEEEEcCCCceeeeeeeecc----cC---------ccC---ceEEE-cCcEEEEEECCCCeEEEEEeecce
Q 003800 202 FHAYQINAMNGELLNHETAAFS----GG---------FVG---DVALV-SSDTLVTLDTTRSILVTVSFKNRK 257 (794)
Q Consensus 202 ~~v~ald~~tG~~~w~~~v~~~----~~---------~s~---~~~~v-g~~~lv~~d~~~g~L~v~~l~sg~ 257 (794)
.+ ..|..+|+.+.......+ .+ -.+ .+.+- .+..+++.. .++.+.+-|+.+|+
T Consensus 175 -~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs-~Dg~i~lWd~~~g~ 244 (902)
T 2oaj_A 175 -TL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIH-EDNSLVFWDANSGH 244 (902)
T ss_dssp -EE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEE-TTCCEEEEETTTCC
T ss_pred -cE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEE-CCCeEEEEECCCCc
Confidence 67 889999987765532211 00 011 11121 345677766 46889999998877
No 184
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=95.03 E-value=0.59 Score=49.62 Aligned_cols=152 Identities=13% Similarity=-0.016 Sum_probs=77.9
Q ss_pred cCCCEEEEEeC-CC--EEEEEECcCCccceEEEcCccc-ceeeeeee-eCCEEEEEEccCCeEEEEeCCCCcEeEEEecc
Q 003800 51 TGRKRVVVSTE-EN--VIASLDLRHGEIFWRHVLGIND-VVDGIDIA-LGKYVITLSSDGSTLRAWNLPDGQMVWESFLR 125 (794)
Q Consensus 51 ~~~~~Vyv~t~-~g--~l~ALn~~tG~ivWR~~l~~~~-~i~~l~~~-~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~l~ 125 (794)
++++.|++.+. +| .|..+|+++|+.. +...... ........ .++.+++.+ .+..++.||..+|+..--....
T Consensus 45 pDg~~l~~~~~~~g~~~l~~~d~~~g~~~--~lt~~~~~~~~~~~~spdg~~l~~~~-~~~~l~~~d~~~g~~~~~~~~~ 121 (388)
T 3pe7_A 45 RDGSKLLFGGAFDGPWNYYLLDLNTQVAT--QLTEGRGDNTFGGFLSPDDDALFYVK-DGRNLMRVDLATLEENVVYQVP 121 (388)
T ss_dssp TTSCEEEEEECTTSSCEEEEEETTTCEEE--ECCCSSCBCSSSCEECTTSSEEEEEE-TTTEEEEEETTTCCEEEEEECC
T ss_pred CCCCEEEEEEcCCCCceEEEEeCCCCceE--EeeeCCCCCccceEEcCCCCEEEEEe-CCCeEEEEECCCCcceeeeech
Confidence 44566777666 55 5999999999864 3232221 11111122 344455544 4568999999999876555443
Q ss_pred CccccCCccccccccccccCCeEEE-E-----------------------ECCEEEEEECCCCcEEEEEeccCcceeeee
Q 003800 126 GSKHSKPLLLVPTNLKVDKDSLILV-S-----------------------SKGCLHAVSSIDGEILWTRDFAAESVEVQQ 181 (794)
Q Consensus 126 ~~~~s~~~~~~~~~~~~~~~~~V~V-~-----------------------~~g~l~ald~~tG~~~W~~~~~~~~~~~~~ 181 (794)
.... ...... ...++..++ . .+..|+.+|..+|+..--...+.. ...
T Consensus 122 ~~~~-~~~~~~-----~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~---~~~ 192 (388)
T 3pe7_A 122 AEWV-GYGTWV-----ANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQENQW---LGH 192 (388)
T ss_dssp TTEE-EEEEEE-----ECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEESSC---EEE
T ss_pred hhcc-ccccee-----ECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecCCcc---ccc
Confidence 3211 000000 011233332 1 136899999999986644433221 112
Q ss_pred EEEEe-cCCEEEEEEecCC--ceeEEEEEEcCCCce
Q 003800 182 VIQLD-ESDQIYVVGYAGS--SQFHAYQINAMNGEL 214 (794)
Q Consensus 182 ~v~s~-~~~~vyv~~~~g~--~~~~v~ald~~tG~~ 214 (794)
+..+. ++..+.+....+. ....++.+|+.+++.
T Consensus 193 ~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~ 228 (388)
T 3pe7_A 193 PIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM 228 (388)
T ss_dssp EEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC
T ss_pred cEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce
Confidence 22233 3333433333221 123678888876654
No 185
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=95.02 E-value=2.9 Score=43.31 Aligned_cols=150 Identities=10% Similarity=-0.027 Sum_probs=77.5
Q ss_pred CCEEEE-EeCCCEEEEEECcCCccceEEEcCcccceeeeeeeeCCEEEEEEc-cC----CeEEEEeCCCCcEeEEEeccC
Q 003800 53 RKRVVV-STEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSS-DG----STLRAWNLPDGQMVWESFLRG 126 (794)
Q Consensus 53 ~~~Vyv-~t~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~-~g----~~v~A~d~~tG~llWe~~l~~ 126 (794)
++++|+ .+..+.|..+|+++|+..-... .....+.++.. ..++.++++. .+ +.|+.||..+|+..-......
T Consensus 55 ~g~l~~~~~~~~~i~~~d~~~~~~~~~~~-~~~~~~~~i~~-~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~ 132 (333)
T 2dg1_A 55 QGQLFLLDVFEGNIFKINPETKEIKRPFV-SHKANPAAIKI-HKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLS 132 (333)
T ss_dssp TSCEEEEETTTCEEEEECTTTCCEEEEEE-CSSSSEEEEEE-CTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSS
T ss_pred CCCEEEEECCCCEEEEEeCCCCcEEEEee-CCCCCcceEEE-CCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCc
Confidence 556776 4678899999999997542221 22222334422 2233344443 33 489999998887642111111
Q ss_pred ccccCCccccccccccccCCeEEEEE--------CCEEEEEECCCCcEEEEEeccCcceeeeeEEEEecCCEEEEEEecC
Q 003800 127 SKHSKPLLLVPTNLKVDKDSLILVSS--------KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAG 198 (794)
Q Consensus 127 ~~~s~~~~~~~~~~~~~~~~~V~V~~--------~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~s~~~~~vyv~~~~g 198 (794)
.. ..+.- ...+.++.+++.. .+.|+.+|..+|+..-...... .+..+..+.++..+|+.....
T Consensus 133 ~~--~~~~~----i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~---~~~~i~~~~dg~~l~v~~~~~ 203 (333)
T 2dg1_A 133 TA--YCIDD----MVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNIS---VANGIALSTDEKVLWVTETTA 203 (333)
T ss_dssp SC--CCEEE----EEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEES---SEEEEEECTTSSEEEEEEGGG
T ss_pred cC--Ccccc----eEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCCC---cccceEECCCCCEEEEEeCCC
Confidence 10 01111 1233356677764 2689999988776543221110 122232122334588765332
Q ss_pred CceeEEEEEEcCC-Cceee
Q 003800 199 SSQFHAYQINAMN-GELLN 216 (794)
Q Consensus 199 ~~~~~v~ald~~t-G~~~w 216 (794)
+ .+..+|..+ |+.+.
T Consensus 204 ~---~i~~~d~~~~g~~~~ 219 (333)
T 2dg1_A 204 N---RLHRIALEDDGVTIQ 219 (333)
T ss_dssp T---EEEEEEECTTSSSEE
T ss_pred C---eEEEEEecCCCcCcc
Confidence 2 678888863 65443
No 186
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=95.00 E-value=2.6 Score=45.92 Aligned_cols=188 Identities=12% Similarity=0.093 Sum_probs=93.6
Q ss_pred CCEEEEEeCC------CEEEEEECcCCccceEEEcCcccceeeeeee-eCCEEEEEEccC--CeEEEEeCCCCcEeEEEe
Q 003800 53 RKRVVVSTEE------NVIASLDLRHGEIFWRHVLGINDVVDGIDIA-LGKYVITLSSDG--STLRAWNLPDGQMVWESF 123 (794)
Q Consensus 53 ~~~Vyv~t~~------g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~-~g~~~V~Vs~~g--~~v~A~d~~tG~llWe~~ 123 (794)
+++++.++++ +.|...|...+.+ +........+..+... .|+.+++++.++ ..|+.||..+|+..--..
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~~~--~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~ 220 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYDGYNQ--FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVAS 220 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETTSCSC--EEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEEC
T ss_pred CCEEEEEEecCCCCccceEEEEcCCCCCC--EEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeec
Confidence 4555555443 7899999875543 2222222223333222 455566655432 589999999998863222
Q ss_pred ccCccccCCccccccccccccCCeEEEE-E---CCEEEEEECCCCcEEEEEeccCcceeeeeEEEEecCCEEEEEEecCC
Q 003800 124 LRGSKHSKPLLLVPTNLKVDKDSLILVS-S---KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGS 199 (794)
Q Consensus 124 l~~~~~s~~~~~~~~~~~~~~~~~V~V~-~---~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~s~~~~~vyv~~~~g~ 199 (794)
..... ..+.+. .+ +..+++. + +..|+.+|..+|+..--..... . ...+..+.++..+++.+..+
T Consensus 221 ~~~~~--~~~~~s-----pd-g~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~-~--~~~~~~spdg~~l~~~s~~~- 288 (415)
T 2hqs_A 221 FPRHN--GAPAFS-----PD-GSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRS-N--NTEPTWFPDSQNLAFTSDQA- 288 (415)
T ss_dssp CSSCE--EEEEEC-----TT-SSEEEEEECTTSSCEEEEEETTTCCEEECCCCSS-C--EEEEEECTTSSEEEEEECTT-
T ss_pred CCCcc--cCEEEc-----CC-CCEEEEEEecCCCceEEEEECCCCCEEeCcCCCC-c--ccceEECCCCCEEEEEECCC-
Confidence 22211 111111 22 2334433 2 3469999999987632211111 1 22232233444566555332
Q ss_pred ceeEEEEEEcCCCceeeeeeeecccCccCceEEE-cCcEEEEEECC--CCeEEEEEeecce
Q 003800 200 SQFHAYQINAMNGELLNHETAAFSGGFVGDVALV-SSDTLVTLDTT--RSILVTVSFKNRK 257 (794)
Q Consensus 200 ~~~~v~ald~~tG~~~w~~~v~~~~~~s~~~~~v-g~~~lv~~d~~--~g~L~v~~l~sg~ 257 (794)
....++.+|+.+|+... +.........+.+- .+..+++.... ...+++.++.+++
T Consensus 289 g~~~i~~~d~~~~~~~~---l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~ 346 (415)
T 2hqs_A 289 GRPQVYKVNINGGAPQR---ITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG 346 (415)
T ss_dssp SSCEEEEEETTSSCCEE---CCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCC
T ss_pred CCcEEEEEECCCCCEEE---EecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCC
Confidence 23478889999987432 11111110112221 33445544433 2468888888776
No 187
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=94.96 E-value=2.4 Score=44.47 Aligned_cols=104 Identities=17% Similarity=0.182 Sum_probs=59.9
Q ss_pred CCCEEEEEeCCCEEEEEECcCCccc-----eEEEcCc-ccceeeeeeeeCCEEEEEEccCCeEEEEeCCCCcEeEEEecc
Q 003800 52 GRKRVVVSTEENVIASLDLRHGEIF-----WRHVLGI-NDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLR 125 (794)
Q Consensus 52 ~~~~Vyv~t~~g~l~ALn~~tG~iv-----WR~~l~~-~~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~l~ 125 (794)
++..++.++.++.|.-.|..+++.. -...+.. ...+..+.....+..++.++.++.|+.||..+|+.+.+....
T Consensus 38 d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h 117 (343)
T 2xzm_R 38 DSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGH 117 (343)
T ss_dssp CCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECC
T ss_pred CCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCC
Confidence 3567888999999988887765421 1222221 223333322233344444556789999999999998877655
Q ss_pred CccccCCccccccccccccCCeEEEEE-CCEEEEEECC
Q 003800 126 GSKHSKPLLLVPTNLKVDKDSLILVSS-KGCLHAVSSI 162 (794)
Q Consensus 126 ~~~~s~~~~~~~~~~~~~~~~~V~V~~-~g~l~ald~~ 162 (794)
.... ..+.+.+ + +..++..+ ++.+...|..
T Consensus 118 ~~~v-~~v~~sp-----~-~~~l~s~~~d~~i~~wd~~ 148 (343)
T 2xzm_R 118 QSEV-YSVAFSP-----D-NRQILSAGAEREIKLWNIL 148 (343)
T ss_dssp CSCE-EEEEECS-----S-TTEEEEEETTSCEEEEESS
T ss_pred CCcE-EEEEECC-----C-CCEEEEEcCCCEEEEEecc
Confidence 4322 1111111 2 23444443 7888888876
No 188
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=94.86 E-value=0.96 Score=48.51 Aligned_cols=118 Identities=14% Similarity=0.161 Sum_probs=69.1
Q ss_pred CCCEEEEEeCCCEEEEEECcCCccceEEEcCcccceeeeeeeeCCEEEEEEccCCeEEEEeCCCCcEeEEEeccCccccC
Q 003800 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSK 131 (794)
Q Consensus 52 ~~~~Vyv~t~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~l~~~~~s~ 131 (794)
..+.++.++.+|.|.-.|.+.+...-+........+..+.....+..++.++.++.++.||..+|+.+-...........
T Consensus 217 ~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~ 296 (380)
T 3iz6_a 217 NANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDN 296 (380)
T ss_dssp SCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCC
T ss_pred CCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEeccccccccc
Confidence 35668888999999999998554333333333333444422223344444666789999999999988776543221100
Q ss_pred CccccccccccccCC-eEEEE-ECCEEEEEECCCCcEEEEE
Q 003800 132 PLLLVPTNLKVDKDS-LILVS-SKGCLHAVSSIDGEILWTR 170 (794)
Q Consensus 132 ~~~~~~~~~~~~~~~-~V~V~-~~g~l~ald~~tG~~~W~~ 170 (794)
..+.+. ......++ .++.. .+|.++..|..+|+.....
T Consensus 297 ~~~~v~-~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~ 336 (380)
T 3iz6_a 297 ELPIVT-SVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNL 336 (380)
T ss_dssp SSCSCS-EEEECSSSSEEEEECTTSCEEEEETTTCCEEEEE
T ss_pred ccCceE-EEEECCCCCEEEEEECCCCEEEEECCCCceEEEE
Confidence 000010 00111133 44444 3899999999999887766
No 189
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Probab=94.76 E-value=0.88 Score=51.84 Aligned_cols=144 Identities=19% Similarity=0.221 Sum_probs=78.0
Q ss_pred EEEEECcCCccceEEEcCcc-cce-----------e----eeeeeeCC--EEEEEEcc--CCeEEEEeCCCCcE--eEEE
Q 003800 65 IASLDLRHGEIFWRHVLGIN-DVV-----------D----GIDIALGK--YVITLSSD--GSTLRAWNLPDGQM--VWES 122 (794)
Q Consensus 65 l~ALn~~tG~ivWR~~l~~~-~~i-----------~----~l~~~~g~--~~V~Vs~~--g~~v~A~d~~tG~l--lWe~ 122 (794)
|..+|-+||+++|+.....+ +.+ + +..-..++ .+|+.-+. ...|.|||..+|++ +|++
T Consensus 231 L~vfdG~TG~~l~~~~~~p~rg~~~~WGD~ygnR~drf~~~vayLDG~~Ps~v~~rGyYtr~~v~A~d~~~~~L~~~W~~ 310 (591)
T 2zux_A 231 LTVFQGSTGKELVTANFEPARGNVSDWGDSYGNRVDRFLAGIAYLDGQRPSLIMTRGYYAKTMLVAYNFRDGKLSKLWTL 310 (591)
T ss_dssp EEEEETTTCCEEEEEECSSCCCCGGGGTCSSSSGGGCEEEEEECTTSSSCEEEEEECCSSSCEEEEEEEETTEEEEEEEE
T ss_pred EEEEeCCCCCEEecccCCCCCCcccccccccccccccceeeEEECCCCCceEEEeccccceeEEEEEECCCCceEEEEEe
Confidence 89999999999999988532 111 1 11001222 24443332 24699999999975 9999
Q ss_pred eccCcc---c-c--CCccccccccccccCC--eEEEEECCEEEEEECCCCcEEEEEeccCcceeeeeEEEEec----CCE
Q 003800 123 FLRGSK---H-S--KPLLLVPTNLKVDKDS--LILVSSKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDE----SDQ 190 (794)
Q Consensus 123 ~l~~~~---~-s--~~~~~~~~~~~~~~~~--~V~V~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~s~~----~~~ 190 (794)
....+. . . ...+.+. .+++++ .|++ ++. ++| .+|+.+|+....-... ..+.-.. +-.
T Consensus 311 d~~~~~~~~~~gqg~h~~~va---DVDgDG~dEIv~--Gs~--~iD-~dG~~L~st~~gHGDa---~hv~dldP~r~GlE 379 (591)
T 2zux_A 311 DSSKSGNEAFAGQGNHNLSIA---DVDGDGKDEIIF--GSM--AVD-HDGKGMYSTGLGHGDA---LHTGDLDPGRPGLE 379 (591)
T ss_dssp ETTSTTCGGGSSCCCSCCEEE---CCSSSSSCEEEE--TTE--EEC-TTSCEEEECSCCCCSC---EEEECCCTTSSSCE
T ss_pred cCCCCCcccccccCCCCCeeE---eCCCCCCceEEE--eee--EEC-CCCCEeeeCCCCCCCe---eEEeecCCCCCCcE
Confidence 876431 1 0 0112222 344433 3443 222 455 7899999987643332 1110011 224
Q ss_pred EEEEEecCCceeEEEEEEcCCCceeeeee
Q 003800 191 IYVVGYAGSSQFHAYQINAMNGELLNHET 219 (794)
Q Consensus 191 vyv~~~~g~~~~~v~ald~~tG~~~w~~~ 219 (794)
+|.+.-.+....-....|+.||+++|+..
T Consensus 380 v~~~~E~~~~~~G~~~~dA~tG~vlw~~~ 408 (591)
T 2zux_A 380 VFQVHEDKNAKYGLSFRDAATGKILWGVY 408 (591)
T ss_dssp EEEECCCTTSSCSEEEEETTTCCEEEEEC
T ss_pred EEEEecCCCCCCccEEEECCCCcEEEEcC
Confidence 55433221110013347999999999984
No 190
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=94.75 E-value=1.8 Score=45.83 Aligned_cols=198 Identities=11% Similarity=0.039 Sum_probs=95.0
Q ss_pred cCCCEEEEEeCCCEEEEEECcCCccceEEEcCcccceee-eeee-eCCEEEEEE---------------------ccCCe
Q 003800 51 TGRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDG-IDIA-LGKYVITLS---------------------SDGST 107 (794)
Q Consensus 51 ~~~~~Vyv~t~~g~l~ALn~~tG~ivWR~~l~~~~~i~~-l~~~-~g~~~V~Vs---------------------~~g~~ 107 (794)
++++.|++++.++.|+.+|..+|+..--...+....... .... .+..++.+. +....
T Consensus 90 pdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (388)
T 3pe7_A 90 PDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCR 169 (388)
T ss_dssp TTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEE
T ss_pred CCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcce
Confidence 456779999988999999999998765444433211001 1011 122222211 12357
Q ss_pred EEEEeCCCCcEeEEEeccCccccCCcccccccccc-ccCCeEEEEE-------CCEEEEEECCCCcEEEEEeccCcceee
Q 003800 108 LRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKV-DKDSLILVSS-------KGCLHAVSSIDGEILWTRDFAAESVEV 179 (794)
Q Consensus 108 v~A~d~~tG~llWe~~l~~~~~s~~~~~~~~~~~~-~~~~~V~V~~-------~g~l~ald~~tG~~~W~~~~~~~~~~~ 179 (794)
|+.||..+|+..--...... . ..+.+ .+ + ++.+++.. ...|+.+|..+++..--........ .
T Consensus 170 l~~~d~~~g~~~~l~~~~~~-~-~~~~~-----sp~d-g~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~-~ 240 (388)
T 3pe7_A 170 LMRVDLKTGESTVILQENQW-L-GHPIY-----RPYD-DSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGES-C 240 (388)
T ss_dssp EEEEETTTCCEEEEEEESSC-E-EEEEE-----ETTE-EEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEE-E
T ss_pred EEEEECCCCceEEeecCCcc-c-cccEE-----CCCC-CCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcc-c
Confidence 99999999986544332211 1 11111 22 2 23333332 2268888876665432111111111 1
Q ss_pred eeEEEEecCCEEEEEEec-CCceeEEEEEEcCCCceeeeeeeec----ccCccCceEEEcCcEEEEEE--------CCCC
Q 003800 180 QQVIQLDESDQIYVVGYA-GSSQFHAYQINAMNGELLNHETAAF----SGGFVGDVALVSSDTLVTLD--------TTRS 246 (794)
Q Consensus 180 ~~~v~s~~~~~vyv~~~~-g~~~~~v~ald~~tG~~~w~~~v~~----~~~~s~~~~~vg~~~lv~~d--------~~~g 246 (794)
..+..+.++..++.++.. +.....++.+|+.+|+...-..... .....+......+..+++.. ....
T Consensus 241 ~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~ 320 (388)
T 3pe7_A 241 THEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDP 320 (388)
T ss_dssp EEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCC
T ss_pred ccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCC
Confidence 122223344556444544 3333468999999998643222111 00111222222223333221 2345
Q ss_pred eEEEEEeecce
Q 003800 247 ILVTVSFKNRK 257 (794)
Q Consensus 247 ~L~v~~l~sg~ 257 (794)
.+++.++.+++
T Consensus 321 ~i~~~d~~~~~ 331 (388)
T 3pe7_A 321 FLYVFNMKNGT 331 (388)
T ss_dssp EEEEEETTTTE
T ss_pred EEEEEeccCCc
Confidence 78888888876
No 191
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=94.70 E-value=4.5 Score=41.50 Aligned_cols=191 Identities=14% Similarity=0.090 Sum_probs=104.6
Q ss_pred CCEEEEEeC------CCEEEEEECcCCc-cceEEEcCccccee-eeeeeeCCEEEEEEccC-----CeEEEEeCCCCcEe
Q 003800 53 RKRVVVSTE------ENVIASLDLRHGE-IFWRHVLGINDVVD-GIDIALGKYVITLSSDG-----STLRAWNLPDGQMV 119 (794)
Q Consensus 53 ~~~Vyv~t~------~g~l~ALn~~tG~-ivWR~~l~~~~~i~-~l~~~~g~~~V~Vs~~g-----~~v~A~d~~tG~ll 119 (794)
++.||+... .+.+..+|+.+++ ..|+..-+.+..-. ......++.+++++|.. ..+..+|+.+++
T Consensus 62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~-- 139 (301)
T 2vpj_A 62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQ-- 139 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTE--
T ss_pred CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEECCEEEEEcccCCCcccceEEEEcCCCCe--
Confidence 678888655 2579999999986 55998754332111 11123566666666532 368999998765
Q ss_pred EEEeccCccccCCccccccccccccCCeEEEEE-------CCEEEEEECCCCcEEEEEeccCcce-eeeeEEEEecCCEE
Q 003800 120 WESFLRGSKHSKPLLLVPTNLKVDKDSLILVSS-------KGCLHAVSSIDGEILWTRDFAAESV-EVQQVIQLDESDQI 191 (794)
Q Consensus 120 We~~l~~~~~s~~~~~~~~~~~~~~~~~V~V~~-------~g~l~ald~~tG~~~W~~~~~~~~~-~~~~~v~s~~~~~v 191 (794)
|+.....+.. ..... ....++.+++.. -..+..+|..++ .|+.-.+.+.- ....+ ...++.+
T Consensus 140 W~~~~~~p~~-----r~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~--~W~~~~~~p~~r~~~~~--~~~~~~i 209 (301)
T 2vpj_A 140 WSMLGDMQTA-----REGAG-LVVASGVIYCLGGYDGLNILNSVEKYDPHTG--HWTNVTPMATKRSGAGV--ALLNDHI 209 (301)
T ss_dssp EEEEEECSSC-----CBSCE-EEEETTEEEEECCBCSSCBCCCEEEEETTTT--EEEEECCCSSCCBSCEE--EEETTEE
T ss_pred EEECCCCCCC-----cccce-EEEECCEEEEECCCCCCcccceEEEEeCCCC--cEEeCCCCCcccccceE--EEECCEE
Confidence 7764322111 11100 111256677763 256889998876 68765433221 01112 2357899
Q ss_pred EEEEecCCc--eeEEEEEEcCCCceeeeeeeecccCccC-ceEEEcCcEEEEEECCC----CeEEEEEeecce
Q 003800 192 YVVGYAGSS--QFHAYQINAMNGELLNHETAAFSGGFVG-DVALVSSDTLVTLDTTR----SILVTVSFKNRK 257 (794)
Q Consensus 192 yv~~~~g~~--~~~v~ald~~tG~~~w~~~v~~~~~~s~-~~~~vg~~~lv~~d~~~----g~L~v~~l~sg~ 257 (794)
|+++...+. .-.+..+|+.+++ |+..-..|..... .+...++.+++..-... ..+.+.|+++++
T Consensus 210 ~v~GG~~~~~~~~~v~~yd~~~~~--W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 210 YVVGGFDGTAHLSSVEAYNIRTDS--WTTVTSMTTPRCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPIIDS 280 (301)
T ss_dssp EEECCBCSSSBCCCEEEEETTTTE--EEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred EEEeCCCCCcccceEEEEeCCCCc--EEECCCCCCcccceeEEEECCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence 987643211 2368899998874 7664334433333 23333544444332111 245666666655
No 192
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=94.65 E-value=6.3 Score=43.01 Aligned_cols=203 Identities=12% Similarity=0.069 Sum_probs=101.1
Q ss_pred CCCEEEEEeCCC--EEEEEECcCCccceEE-Ec-C-cccceeeeeeeeCCEEEEEEccCCeEEEEeCCCCcEeEEEeccC
Q 003800 52 GRKRVVVSTEEN--VIASLDLRHGEIFWRH-VL-G-INDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRG 126 (794)
Q Consensus 52 ~~~~Vyv~t~~g--~l~ALn~~tG~ivWR~-~l-~-~~~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~l~~ 126 (794)
+++.+|++...+ .|+.+|+.+|...-+. .+ . ......++.+...++.++++...++|+.||..+|....-.....
T Consensus 181 ~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~ 260 (409)
T 3hrp_A 181 DKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLEL 260 (409)
T ss_dssp TSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCC
T ss_pred CCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccc
Confidence 355788888765 8999999887652222 11 1 11112233222324566666556789999999887543322111
Q ss_pred ccccCCcccccccccccc-CCeEEEEE--CCEEEEEECCCCcEEEEEecc-C-c---------ce-eeeeEEEEecCCEE
Q 003800 127 SKHSKPLLLVPTNLKVDK-DSLILVSS--KGCLHAVSSIDGEILWTRDFA-A-E---------SV-EVQQVIQLDESDQI 191 (794)
Q Consensus 127 ~~~s~~~~~~~~~~~~~~-~~~V~V~~--~g~l~ald~~tG~~~W~~~~~-~-~---------~~-~~~~~v~s~~~~~v 191 (794)
.......|.. .++.+. ++.+|+.. ++++++++.. |+........ . . .+ .|..+. ...++.+
T Consensus 261 ~g~~~~~P~~--~ia~~p~~g~lyv~d~~~~~I~~~~~~-g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia-~d~dG~l 336 (409)
T 3hrp_A 261 SGSLGTNPGP--YLIYYFVDSNFYMSDQNLSSVYKITPD-GECEWFCGSATQKTVQDGLREEALFAQPNGMT-VDEDGNF 336 (409)
T ss_dssp CSCCCCSSCC--EEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECTTCCSCBCEEGGGCBCSSEEEEE-ECTTCCE
T ss_pred cCCCCCCccc--cEEEeCCCCEEEEEeCCCCEEEEEecC-CCEEEEEeCCCCCCcCCCcccccEeCCCeEEE-EeCCCCE
Confidence 0000000010 112333 46777764 7889998854 4433222211 0 0 01 144443 2345678
Q ss_pred EEEEe-cCCceeEEEEEEcCCCceeeeeeeecccCc-cC---ceEEEcCcEEEEEECCCCeEEEEEeecceeeeEEEee
Q 003800 192 YVVGY-AGSSQFHAYQINAMNGELLNHETAAFSGGF-VG---DVALVSSDTLVTLDTTRSILVTVSFKNRKIAFQETHL 265 (794)
Q Consensus 192 yv~~~-~g~~~~~v~ald~~tG~~~w~~~v~~~~~~-s~---~~~~vg~~~lv~~d~~~g~L~v~~l~sg~~~~~~~~l 265 (794)
|+... .+. ++..+|+.+|+...-.-.....+. .+ ..-+ ....-+|+|.+ |.|++.|..+.+ ++.+.+
T Consensus 337 yvad~~~~~---~I~~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~-~~P~giavd~~-g~lyVad~~n~~--Ir~i~~ 408 (409)
T 3hrp_A 337 YIVDGFKGY---CLRKLDILDGYVSTVAGQVDVASQIDGTPLEATF-NYPYDICYDGE-GGYWIAEAWGKA--IRKYAV 408 (409)
T ss_dssp EEEETTTTC---EEEEEETTTTEEEEEEECTTCBSCCCBSTTTCCB-SSEEEEEECSS-SEEEEEESTTCE--EEEEEE
T ss_pred EEEeCCCCC---EEEEEECCCCEEEEEeCCCCCCCcCCCChhceEe-CCceEEEEcCC-CCEEEEECCCCe--EEEEEe
Confidence 87654 333 788999888875422110000110 00 0000 11233566654 777777777766 454443
No 193
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=94.61 E-value=1.2 Score=47.76 Aligned_cols=154 Identities=12% Similarity=0.133 Sum_probs=89.0
Q ss_pred CCEEEEEe-CCCEEEEEECcCCccceEEEcCc----c--c-ceeeeeee--eCCEEE-EEEc-------------cCCeE
Q 003800 53 RKRVVVST-EENVIASLDLRHGEIFWRHVLGI----N--D-VVDGIDIA--LGKYVI-TLSS-------------DGSTL 108 (794)
Q Consensus 53 ~~~Vyv~t-~~g~l~ALn~~tG~ivWR~~l~~----~--~-~i~~l~~~--~g~~~V-~Vs~-------------~g~~v 108 (794)
++++|+++ ..+.|+++|+.+|.. ....++. . . ...|+..- ..++.+ ++.. ..+.|
T Consensus 24 ~g~~~vs~l~~g~V~~~~~~~~~~-~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v 102 (334)
T 2p9w_A 24 RQVFYQSNLYKGRIEVYNPKTQSH-FNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSF 102 (334)
T ss_dssp TTEEEEEETTTTEEEEECTTTCCE-EEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEE
T ss_pred CCEEEEEeccCCEEEEEcCCCCeE-EEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccccCCCCEE
Confidence 68899999 589999999976643 3443432 1 0 12355331 223434 4332 13679
Q ss_pred EEEeCC---CCcEeEEEeccCcccc-----CCccccccccccccCCeEEEE--EC-CEEEEEECCCCc-EEEEEeccCcc
Q 003800 109 RAWNLP---DGQMVWESFLRGSKHS-----KPLLLVPTNLKVDKDSLILVS--SK-GCLHAVSSIDGE-ILWTRDFAAES 176 (794)
Q Consensus 109 ~A~d~~---tG~llWe~~l~~~~~s-----~~~~~~~~~~~~~~~~~V~V~--~~-g~l~ald~~tG~-~~W~~~~~~~~ 176 (794)
..+|+. +|+++|...+....-. .........++++.++.+||. .. +.++++++..-. ..|-.+.+...
T Consensus 103 ~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~~~~~~~~~~~~ 182 (334)
T 2p9w_A 103 HSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKTVSTFAWESGNGG 182 (334)
T ss_dssp EEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCCEEEEEECCCCSS
T ss_pred EEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEEeeeeecCCCcc
Confidence 999999 9999999998631100 000011112356667889995 37 999999976332 44765443211
Q ss_pred e--eeeeEEEEecCCEEEEEEecCCceeEEEEEEcCC
Q 003800 177 V--EVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMN 211 (794)
Q Consensus 177 ~--~~~~~v~s~~~~~vyv~~~~g~~~~~v~ald~~t 211 (794)
. -+..++....+..+++... ++ +++++|+.+
T Consensus 183 ~~~G~nGIv~~pdg~~Liv~~~-~g---~L~~fD~~~ 215 (334)
T 2p9w_A 183 QRPGYSGITFDPHSNKLIAFGG-PR---ALTAFDVSK 215 (334)
T ss_dssp SCCSCSEEEEETTTTEEEEESS-SS---SEEEEECSS
T ss_pred cccCcceEEEeCCCCEEEEEcC-CC---eEEEEcCCC
Confidence 1 1223443234555665443 33 799999873
No 194
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=94.60 E-value=0.064 Score=57.05 Aligned_cols=107 Identities=9% Similarity=0.002 Sum_probs=49.1
Q ss_pred CCCEEEEEeCCCEEEEEECcCCc--cceEEEcCcccceeeeeeeeCCEEEEEEccCCeEEEEeCCCCc---EeEEEeccC
Q 003800 52 GRKRVVVSTEENVIASLDLRHGE--IFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQ---MVWESFLRG 126 (794)
Q Consensus 52 ~~~~Vyv~t~~g~l~ALn~~tG~--ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~tG~---llWe~~l~~ 126 (794)
+++.+++++.+|.|.-.|..+|+ .+-... .....+..+.....+..++.++.++.|+.||..+|+ ..-......
T Consensus 22 ~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~ 100 (377)
T 3dwl_C 22 QRTEFVTTTATNQVELYEQDGNGWKHARTFS-DHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLN 100 (377)
T ss_dssp SSSEEECCCSSSCBCEEEEETTEEEECCCBC-CCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCS
T ss_pred CCCEEEEecCCCEEEEEEccCCceEEEEEEe-cCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccC
Confidence 35567778789999999988883 222211 112234444223333444445556799999999988 222222222
Q ss_pred ccccCCccccccccccccCCeEEEE-ECCEEEEEECCCCcE
Q 003800 127 SKHSKPLLLVPTNLKVDKDSLILVS-SKGCLHAVSSIDGEI 166 (794)
Q Consensus 127 ~~~s~~~~~~~~~~~~~~~~~V~V~-~~g~l~ald~~tG~~ 166 (794)
... ..+.+ ..+ +..++.. .++.+...|..+++.
T Consensus 101 ~~v-~~~~~-----~~~-~~~l~~~~~d~~i~iwd~~~~~~ 134 (377)
T 3dwl_C 101 RAA-TFVRW-----SPN-EDKFAVGSGARVISVCYFEQEND 134 (377)
T ss_dssp SCE-EEEEC-----CTT-SSCCEEEESSSCEEECCC-----
T ss_pred Cce-EEEEE-----CCC-CCEEEEEecCCeEEEEEECCccc
Confidence 111 11111 111 2334444 378888888887764
No 195
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=94.53 E-value=2 Score=45.29 Aligned_cols=108 Identities=11% Similarity=0.072 Sum_probs=61.3
Q ss_pred CCCEEEEEeCCCEEEEEECcCCccceEEEcCcc--cceeeeeeeeCCEEEEEEccCCeEEEEeCCCCcEeEEEeccCccc
Q 003800 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVLGIN--DVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKH 129 (794)
Q Consensus 52 ~~~~Vyv~t~~g~l~ALn~~tG~ivWR~~l~~~--~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~l~~~~~ 129 (794)
++..+.+++.++.|.-.|.++|+..-+..+... ..+..+.....+..++.++.++.++.||..++.......+.+-.
T Consensus 27 ~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~- 105 (345)
T 3fm0_A 27 AGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHE- 105 (345)
T ss_dssp TSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCS-
T ss_pred CCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCC-
Confidence 466788899999999999988875555544322 33444432334445554666679999999888654333332211
Q ss_pred cCCccccccccccccCCeEEE-EE-CCEEEEEECCCCc
Q 003800 130 SKPLLLVPTNLKVDKDSLILV-SS-KGCLHAVSSIDGE 165 (794)
Q Consensus 130 s~~~~~~~~~~~~~~~~~V~V-~~-~g~l~ald~~tG~ 165 (794)
.....+ ....++..++ .+ ++.+...|..++.
T Consensus 106 -~~v~~v----~~sp~~~~l~s~s~D~~v~iwd~~~~~ 138 (345)
T 3fm0_A 106 -NEVKSV----AWAPSGNLLATCSRDKSVWVWEVDEED 138 (345)
T ss_dssp -SCEEEE----EECTTSSEEEEEETTSCEEEEEECTTS
T ss_pred -CCceEE----EEeCCCCEEEEEECCCeEEEEECCCCC
Confidence 011111 1111333344 33 7777777776654
No 196
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=94.47 E-value=1.9 Score=49.58 Aligned_cols=188 Identities=11% Similarity=0.085 Sum_probs=102.6
Q ss_pred EEEEEeCCCEEEEEECcCCccceEEEcCcc-cceeeeeeeeCCEEEEEEccCCeEEEEeCCCCcEeEEEeccCc---ccc
Q 003800 55 RVVVSTEENVIASLDLRHGEIFWRHVLGIN-DVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGS---KHS 130 (794)
Q Consensus 55 ~Vyv~t~~g~l~ALn~~tG~ivWR~~l~~~-~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~l~~~---~~s 130 (794)
+++.++.++.|.-.|.++|+.. +.+... ..+..+....++..++.++.++.++.||..+|+.+-....... ...
T Consensus 162 ~l~s~s~D~~v~lwd~~~~~~~--~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~ 239 (611)
T 1nr0_A 162 RIISGSDDNTVAIFEGPPFKFK--STFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHS 239 (611)
T ss_dssp EEEEEETTSCEEEEETTTBEEE--EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSS
T ss_pred EEEEEeCCCeEEEEECCCCeEe--eeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccC
Confidence 5888999999999998887653 334322 2344442233334444455567999999999988755421000 000
Q ss_pred CCccccccccccccCCeEEE-EE-CCEEEEEECCCCcEEEEEeccCcce-eeeeEEEEecCCEEEEEEecCCceeEEEEE
Q 003800 131 KPLLLVPTNLKVDKDSLILV-SS-KGCLHAVSSIDGEILWTRDFAAESV-EVQQVIQLDESDQIYVVGYAGSSQFHAYQI 207 (794)
Q Consensus 131 ~~~~~~~~~~~~~~~~~V~V-~~-~g~l~ald~~tG~~~W~~~~~~~~~-~~~~~v~s~~~~~vyv~~~~g~~~~~v~al 207 (794)
.....+ ....++..++ .+ |+.+...|..+|+..-+........ ....+. ..+..+...+.+| .+..+
T Consensus 240 ~~V~~v----~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~s~s~d~----~i~~~ 309 (611)
T 1nr0_A 240 GSVFGL----TWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGII--WTKQALVSISANG----FINFV 309 (611)
T ss_dssp SCEEEE----EECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEE--ECSSCEEEEETTC----CEEEE
T ss_pred CCEEEE----EECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEE--EcCCEEEEEeCCC----cEEEE
Confidence 011111 1122344444 33 8999999999998877665432211 111222 2455555555555 57778
Q ss_pred EcCCCceeeeeeeecccCccCceEEE-cCcEEEEEECCCCeEEEEEeecce
Q 003800 208 NAMNGELLNHETAAFSGGFVGDVALV-SSDTLVTLDTTRSILVTVSFKNRK 257 (794)
Q Consensus 208 d~~tG~~~w~~~v~~~~~~s~~~~~v-g~~~lv~~d~~~g~L~v~~l~sg~ 257 (794)
|+.+|+...... .-...+. .+.+- .+..++... ..+.+.+-|+.++.
T Consensus 310 ~~~~~~~~~~~~-gh~~~v~-~l~~spdg~~l~s~s-~D~~v~~Wd~~~~~ 357 (611)
T 1nr0_A 310 NPELGSIDQVRY-GHNKAIT-ALSSSADGKTLFSAD-AEGHINSWDISTGI 357 (611)
T ss_dssp ETTTTEEEEEEC-CCSSCEE-EEEECTTSSEEEEEE-TTSCEEEEETTTCC
T ss_pred eCCCCCcceEEc-CCCCCEE-EEEEeCCCCEEEEEe-CCCcEEEEECCCCc
Confidence 888887443221 0011111 11121 334666665 35788888888776
No 197
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=94.45 E-value=1.6 Score=44.60 Aligned_cols=138 Identities=14% Similarity=0.129 Sum_probs=77.0
Q ss_pred CCEEEEEECcCCccceEEEcCcccceeeeeeeeCCEEEEEEccCCeEEEEeCC-CCcE-eEEEeccCccccCCccccccc
Q 003800 62 ENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLP-DGQM-VWESFLRGSKHSKPLLLVPTN 139 (794)
Q Consensus 62 ~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~-tG~l-lWe~~l~~~~~s~~~~~~~~~ 139 (794)
.+.|+.+|+. |+.. ..........++.....+..++....++.|+.||.. +|++ .=...+.. .. .. +..
T Consensus 152 ~~~l~~~~~~-g~~~--~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~-~~-~~----p~~ 222 (296)
T 3e5z_A 152 GRWVFRLAPD-GTLS--APIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTV-EP-GK----TDG 222 (296)
T ss_dssp SCEEEEECTT-SCEE--EEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECC-SS-SC----CCS
T ss_pred CcEEEEECCC-CCEE--EeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeC-CC-CC----CCe
Confidence 4578888876 6542 212211112233222334455434445789999987 7876 11111111 10 00 001
Q ss_pred cccccCCeEEEEECCEEEEEECCCCcEEEEEeccCcceeeeeEEEE-ecCCEEEEEEecCCceeEEEEEEcCCCceeee
Q 003800 140 LKVDKDSLILVSSKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQL-DESDQIYVVGYAGSSQFHAYQINAMNGELLNH 217 (794)
Q Consensus 140 ~~~~~~~~V~V~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~s-~~~~~vyv~~~~g~~~~~v~ald~~tG~~~w~ 217 (794)
+..+.++.+++..++.|+.+|.. |+....+..+.. +..+... .+++.+|+.+. + .++.++++++++...
T Consensus 223 i~~d~~G~l~v~~~~~v~~~~~~-g~~~~~~~~~~~---~~~~~f~~~d~~~L~v~t~-~----~l~~~~~~~~~~~~~ 292 (296)
T 3e5z_A 223 LRVDAGGLIWASAGDGVHVLTPD-GDELGRVLTPQT---TSNLCFGGPEGRTLYMTVS-T----EFWSIETNVRGLEHH 292 (296)
T ss_dssp EEEBTTSCEEEEETTEEEEECTT-SCEEEEEECSSC---CCEEEEESTTSCEEEEEET-T----EEEEEECSCCBCCC-
T ss_pred EEECCCCCEEEEcCCeEEEECCC-CCEEEEEECCCC---ceeEEEECCCCCEEEEEcC-C----eEEEEEccccccccc
Confidence 13444677888778999999986 888877776554 2333322 23446887553 3 599999998877543
No 198
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=94.42 E-value=4.8 Score=40.69 Aligned_cols=148 Identities=9% Similarity=0.055 Sum_probs=83.2
Q ss_pred EEEEeCCCEEEEEECcCCccceEEEcCcc-cceeeeeeeeCCEEEEEEccCCeEEEEeCCCCcEeEEEeccCccccCCcc
Q 003800 56 VVVSTEENVIASLDLRHGEIFWRHVLGIN-DVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLL 134 (794)
Q Consensus 56 Vyv~t~~g~l~ALn~~tG~ivWR~~l~~~-~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~l~~~~~s~~~~ 134 (794)
+++++.++.|.--|.+||+.+-...+... ..+..+.....+..++.++.++.|+.||..+|+.+.......... .
T Consensus 38 ~lAvg~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~----~ 113 (318)
T 4ggc_A 38 VLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARV----G 113 (318)
T ss_dssp EEEEEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCE----E
T ss_pred EEEEEeCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceE----E
Confidence 44444578899999999998877766544 234444333344455556667899999999999998887654322 1
Q ss_pred ccccccccccCCeEEEEE-CCEEEEEECCCCcEE-EEEeccCcceeeeeEEEEecCCEEEEEEecCCceeEEEEEEcCCC
Q 003800 135 LVPTNLKVDKDSLILVSS-KGCLHAVSSIDGEIL-WTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNG 212 (794)
Q Consensus 135 ~~~~~~~~~~~~~V~V~~-~g~l~ald~~tG~~~-W~~~~~~~~~~~~~~v~s~~~~~vyv~~~~g~~~~~v~ald~~tG 212 (794)
.. ... +..++..+ ++.+...+..++... -........ ...+.....+..++..+.+| .+...|..+|
T Consensus 114 ~~----~~~-~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~s~~~d~----~i~iwd~~~~ 182 (318)
T 4ggc_A 114 SL----SWN-SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQE--VCGLRWAPDGRHLASGGNDN----LVNVWPSAPG 182 (318)
T ss_dssp EE----EEE-TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSC--EEEEEECTTSSEEEEEETTS----CEEEEESSCB
T ss_pred Ee----ecC-CCEEEEEecCCceEeeecCCCceeEEEEcCccCc--eEEEEEcCCCCEEEEEecCc----ceeEEECCCC
Confidence 11 111 23333333 666666666655322 222211111 11122122334444434444 5777899988
Q ss_pred ceeeee
Q 003800 213 ELLNHE 218 (794)
Q Consensus 213 ~~~w~~ 218 (794)
+.....
T Consensus 183 ~~~~~~ 188 (318)
T 4ggc_A 183 EGGWVP 188 (318)
T ss_dssp TTBSCC
T ss_pred cccccc
Confidence 865443
No 199
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=94.33 E-value=5.3 Score=41.77 Aligned_cols=143 Identities=12% Similarity=0.072 Sum_probs=73.5
Q ss_pred CCEEEEEe-CCCEEEEEECcCCccceEEEcCcccceeeeeeeeCCEEEEEEccCCeEEEEeCCCCcEeEEEeccCccccC
Q 003800 53 RKRVVVST-EENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSK 131 (794)
Q Consensus 53 ~~~Vyv~t-~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~l~~~~~s~ 131 (794)
++.+|+.. ..+.|..+|+++|+.. +..++. .+.++....++.+++ +.. ..|+.||..+|+..--...... . .
T Consensus 60 ~~~l~~~d~~~~~i~~~d~~~~~~~-~~~~~~--~v~~i~~~~dg~l~v-~~~-~gl~~~d~~~g~~~~~~~~~~~-~-~ 132 (326)
T 2ghs_A 60 SGTAWWFNILERELHELHLASGRKT-VHALPF--MGSALAKISDSKQLI-ASD-DGLFLRDTATGVLTLHAELESD-L-P 132 (326)
T ss_dssp TTEEEEEEGGGTEEEEEETTTTEEE-EEECSS--CEEEEEEEETTEEEE-EET-TEEEEEETTTCCEEEEECSSTT-C-T
T ss_pred CCEEEEEECCCCEEEEEECCCCcEE-EEECCC--cceEEEEeCCCeEEE-EEC-CCEEEEECCCCcEEEEeeCCCC-C-C
Confidence 45666554 5789999999998753 112322 233442223444444 443 4599999999987533222111 0 0
Q ss_pred CccccccccccccCCeEEEEE--------CCEEEEEECCCCcEEEEEeccCcceeeeeEEEEecCCEEEEEEecCCceeE
Q 003800 132 PLLLVPTNLKVDKDSLILVSS--------KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFH 203 (794)
Q Consensus 132 ~~~~~~~~~~~~~~~~V~V~~--------~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~s~~~~~vyv~~~~g~~~~~ 203 (794)
..... ....+.++.+++.. .+.|++++ +|+..-...... .+..+..+.++..+|+.....+ .
T Consensus 133 ~~~~~--~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~~---~~~~i~~s~dg~~lyv~~~~~~---~ 202 (326)
T 2ghs_A 133 GNRSN--DGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFADIS---IPNSICFSPDGTTGYFVDTKVN---R 202 (326)
T ss_dssp TEEEE--EEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEEES---SEEEEEECTTSCEEEEEETTTC---E
T ss_pred CCCCC--CEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCCCc---ccCCeEEcCCCCEEEEEECCCC---E
Confidence 00000 11233356677653 26899998 676543221100 1222322223446777553322 6
Q ss_pred EEEEEcC--CC
Q 003800 204 AYQINAM--NG 212 (794)
Q Consensus 204 v~ald~~--tG 212 (794)
+..+|.. +|
T Consensus 203 I~~~d~~~~~G 213 (326)
T 2ghs_A 203 LMRVPLDARTG 213 (326)
T ss_dssp EEEEEBCTTTC
T ss_pred EEEEEcccccC
Confidence 7778865 78
No 200
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=94.20 E-value=7.1 Score=41.84 Aligned_cols=110 Identities=22% Similarity=0.294 Sum_probs=62.0
Q ss_pred EEEEEeCCCEEEEEECcCCccceEEEcCcc----cceeeeeee--------eCCEEEEEEccCCeEEEEeCCCCcEeEEE
Q 003800 55 RVVVSTEENVIASLDLRHGEIFWRHVLGIN----DVVDGIDIA--------LGKYVITLSSDGSTLRAWNLPDGQMVWES 122 (794)
Q Consensus 55 ~Vyv~t~~g~l~ALn~~tG~ivWR~~l~~~----~~i~~l~~~--------~g~~~V~Vs~~g~~v~A~d~~tG~llWe~ 122 (794)
.+..++.++.|.-.|.++|+..-.+.+..- +.+..+... .++.+++-++.+++||.||..++...-..
T Consensus 103 ~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~ 182 (393)
T 4gq1_A 103 FLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAG 182 (393)
T ss_dssp EEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEE
T ss_pred EEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeee
Confidence 366677889999999999988776655321 223322111 12233333456789999999988876655
Q ss_pred eccCccccCCccccccccccccCCeEEEEE-CCEEEEEECCCCcEEEEE
Q 003800 123 FLRGSKHSKPLLLVPTNLKVDKDSLILVSS-KGCLHAVSSIDGEILWTR 170 (794)
Q Consensus 123 ~l~~~~~s~~~~~~~~~~~~~~~~~V~V~~-~g~l~ald~~tG~~~W~~ 170 (794)
....... ....+.| +....++..+ +|.+...|..+|+...+.
T Consensus 183 ~~~~~~v-~~v~~~p-----~~~~~l~~~~~d~~v~~wd~~t~~~~~~~ 225 (393)
T 4gq1_A 183 YPLSSPG-ISVQFRP-----SNPNQLIVGERNGNIRIFDWTLNLSAEEN 225 (393)
T ss_dssp EECSSCE-EEEEEET-----TEEEEEEEEETTSEEEEEETTCCC-----
T ss_pred cCCCCCc-EEEEECC-----CCCceEEecCCCCEEEEEECCCCcccccc
Confidence 4433221 1111222 2112333343 899999999999766543
No 201
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=94.14 E-value=6.5 Score=41.11 Aligned_cols=198 Identities=15% Similarity=0.145 Sum_probs=91.1
Q ss_pred cCCCEEEEEeCC----CEE--EEEECcCCccceEEEcCccc-ceeeeeeeeCCEEEEEEc-cCCeEEEEeCCCCcEeEEE
Q 003800 51 TGRKRVVVSTEE----NVI--ASLDLRHGEIFWRHVLGIND-VVDGIDIALGKYVITLSS-DGSTLRAWNLPDGQMVWES 122 (794)
Q Consensus 51 ~~~~~Vyv~t~~----g~l--~ALn~~tG~ivWR~~l~~~~-~i~~l~~~~g~~~V~Vs~-~g~~v~A~d~~tG~llWe~ 122 (794)
.+++.||+++++ |.+ +.+|.++|+..-.......+ ....+. .++..++++. .++.+..|+..++..+.+.
T Consensus 59 pdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~--~dg~~l~~~~~~~~~v~~~~~~~~g~~~~~ 136 (361)
T 3scy_A 59 ADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLT--TNGKNIVTANYSGGSITVFPIGQDGALLPA 136 (361)
T ss_dssp TTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEE--ECSSEEEEEETTTTEEEEEEBCTTSCBCSC
T ss_pred CCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEE--ECCCEEEEEECCCCEEEEEEeCCCCcCccc
Confidence 346679999885 565 56777778653333332111 122332 2444555554 4678999998744332111
Q ss_pred ----eccCccccCC-----ccccccccccccCC-eEEEEE--CCEEEEEECC--CC----c-EE-----EEEeccCccee
Q 003800 123 ----FLRGSKHSKP-----LLLVPTNLKVDKDS-LILVSS--KGCLHAVSSI--DG----E-IL-----WTRDFAAESVE 178 (794)
Q Consensus 123 ----~l~~~~~s~~-----~~~~~~~~~~~~~~-~V~V~~--~g~l~ald~~--tG----~-~~-----W~~~~~~~~~~ 178 (794)
...+... .+ ..... .....++ .+++.. ++.+..++.. +| + .. -....+... .
T Consensus 137 ~~~~~~~g~~~-~~~~~~~~~~~~--~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~ 212 (361)
T 3scy_A 137 SDVIEFKGSGP-DKERQTMPHLHC--VRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGS-G 212 (361)
T ss_dssp SEEEECCCCCS-CTTTCSSCCEEE--EEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTC-C
T ss_pred ceeEEccCCCC-CccccCCCcceE--EEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCC-C
Confidence 1111000 00 00000 0112233 355543 5555555433 43 2 11 122222211 1
Q ss_pred eeeEEEEecCCEEEEEEecCCceeEEEEEEcCCCceeeeeeeec-ccCccC--ceEEE-cCcEEEEEECC-CCeEEEEEe
Q 003800 179 VQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAF-SGGFVG--DVALV-SSDTLVTLDTT-RSILVTVSF 253 (794)
Q Consensus 179 ~~~~v~s~~~~~vyv~~~~g~~~~~v~ald~~tG~~~w~~~v~~-~~~~s~--~~~~v-g~~~lv~~d~~-~g~L~v~~l 253 (794)
+..+..+.++..+|+.+..++ .+..+|..+|+......+.. +....+ .+.+- .+..+++.+.. .+.+.+.++
T Consensus 213 ~~~~~~spdg~~l~v~~~~~~---~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~ 289 (361)
T 3scy_A 213 PRHLIFNSDGKFAYLINEIGG---TVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKV 289 (361)
T ss_dssp EEEEEECTTSSEEEEEETTTC---EEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEE
T ss_pred CeEEEEcCCCCEEEEEcCCCC---eEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEE
Confidence 334433334446777653333 67777777887654443322 221111 12222 33456566655 567888777
Q ss_pred e--cce
Q 003800 254 K--NRK 257 (794)
Q Consensus 254 ~--sg~ 257 (794)
. +|+
T Consensus 290 ~~~~g~ 295 (361)
T 3scy_A 290 DETNGT 295 (361)
T ss_dssp CTTTCC
T ss_pred cCCCCc
Confidence 4 454
No 202
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=94.13 E-value=0.81 Score=50.03 Aligned_cols=191 Identities=13% Similarity=0.012 Sum_probs=98.0
Q ss_pred CCEEEEEeCCCEEEEEECcCCccceEEEcC-cccceeeeeee-eCCEEEEEEccCCeEEEEeCCCCcEeEEEeccCcccc
Q 003800 53 RKRVVVSTEENVIASLDLRHGEIFWRHVLG-INDVVDGIDIA-LGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHS 130 (794)
Q Consensus 53 ~~~Vyv~t~~g~l~ALn~~tG~ivWR~~l~-~~~~i~~l~~~-~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~l~~~~~s 130 (794)
...|.+++.+|.|.-.|..+|+..=...+. ..+.+..+... .++..++.++.++.|+.||..++.............
T Consensus 132 ~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~- 210 (435)
T 4e54_B 132 PSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINI- 210 (435)
T ss_dssp TTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSC-
T ss_pred CCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCc-
Confidence 446888999999999999988765444432 23345544322 233445445566799999998776654443332211
Q ss_pred CCccccccccccccCCeEEE-E-ECCEEEEEECCCCcEEEEEeccCcceeeeeEEEEecCCEEEEEE-ecCCceeEEEEE
Q 003800 131 KPLLLVPTNLKVDKDSLILV-S-SKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVG-YAGSSQFHAYQI 207 (794)
Q Consensus 131 ~~~~~~~~~~~~~~~~~V~V-~-~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~s~~~~~vyv~~-~~g~~~~~v~al 207 (794)
.+... ....++..++ . .+|.+...|.. |+.+++....... ...+.....+..+++.+ .+| .+..+
T Consensus 211 ---~~~~~--~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~--v~~v~~~p~~~~~~~s~s~d~----~v~iw 278 (435)
T 4e54_B 211 ---WFCSL--DVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKK--VTHVALNPCCDWFLATASVDQ----TVKIW 278 (435)
T ss_dssp ---CCCCE--EEETTTTEEEEECSSSBEEEEESS-SCBCCCSBCCSSC--EEEEEECTTCSSEEEEEETTS----BCCEE
T ss_pred ---cEEEE--EECCCCCEEEEEeCCCcEeeeccC-cceeEEEecccce--EEeeeecCCCceEEEEecCcc----eeeEE
Confidence 11110 1122343444 4 37888888864 4444443322221 11222112333344433 333 56667
Q ss_pred EcCCCceeeeeeeecc--cCccCceEEEcCcEEEEEECCCCeEEEEEeecce
Q 003800 208 NAMNGELLNHETAAFS--GGFVGDVALVSSDTLVTLDTTRSILVTVSFKNRK 257 (794)
Q Consensus 208 d~~tG~~~w~~~v~~~--~~~s~~~~~vg~~~lv~~d~~~g~L~v~~l~sg~ 257 (794)
|+.+++.......... ..+..-++-..+..++... ..+.+.+-++.++.
T Consensus 279 d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~-~D~~i~iwd~~~~~ 329 (435)
T 4e54_B 279 DLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTD-QKSEIRVYSASQWD 329 (435)
T ss_dssp ETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEE-SSSCEEEEESSSSS
T ss_pred ecccccccceEEEeeeccccccceeECCCCCeeEEEc-CCCEEEEEECCCCc
Confidence 8877765433211111 1111100001334555555 45888888888876
No 203
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=94.01 E-value=3.2 Score=47.83 Aligned_cols=143 Identities=13% Similarity=0.122 Sum_probs=86.1
Q ss_pred CCCEEEEEeC------------------CCEEEEEECcCCccceEEEcCcccceeeeeeeeCCEEEEEEccC--------
Q 003800 52 GRKRVVVSTE------------------ENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDG-------- 105 (794)
Q Consensus 52 ~~~~Vyv~t~------------------~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~~g-------- 105 (794)
+.+.||++++ +|.+.++|.+|.+++|+...+.. ..++.+.-+++.++++..+
T Consensus 146 ~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg~--pd~~~~spdGk~~~vt~~~se~~~~i~ 223 (595)
T 1fwx_A 146 RSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSGN--LDNCDADYEGKWAFSTSYNSEKGMTLP 223 (595)
T ss_dssp BCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESSC--CCCEEECSSSSEEEEEESCTTCCSSHH
T ss_pred CCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCCC--ccceEECCCCCEEEEEecCcccCcchh
Confidence 4778999963 46899999999999999988543 2333222344555554422
Q ss_pred ------------------------------CeEEEEeCCC--CcE-eEEEeccCccccCCccccccccccccCCeEEEEE
Q 003800 106 ------------------------------STLRAWNLPD--GQM-VWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSS 152 (794)
Q Consensus 106 ------------------------------~~v~A~d~~t--G~l-lWe~~l~~~~~s~~~~~~~~~~~~~~~~~V~V~~ 152 (794)
+.|..+|..+ |+. +-..+...... ...+ ..+ ++.++|..
T Consensus 224 ~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg~~Ph--Gv~~-----sPD-Gk~v~V~~ 295 (595)
T 1fwx_A 224 EMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPH--GCNM-----APD-KKHLCVAG 295 (595)
T ss_dssp HHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEEESSCC--CEEE-----CTT-SSEEEEEC
T ss_pred hccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEecCCCce--EEEE-----cCC-CCEEEEeC
Confidence 1377777777 655 45555443221 1111 223 45666653
Q ss_pred --CCEEEEEECCCCc------------EEEEEeccCcceeeeeEEEEecCCEEEEEEecCCceeEEEEEEcCC
Q 003800 153 --KGCLHAVSSIDGE------------ILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMN 211 (794)
Q Consensus 153 --~g~l~ald~~tG~------------~~W~~~~~~~~~~~~~~v~s~~~~~vyv~~~~g~~~~~v~ald~~t 211 (794)
+.++..+|.++.+ +..+.+... .|..+.. ..++.+|+..+-.+ .+..+|.++
T Consensus 296 ~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~---gP~h~aF-~~dG~aY~t~~lds---qV~kwdi~~ 361 (595)
T 1fwx_A 296 KLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGL---GPLHTAF-DGRGNAYTSLFLDS---QVVKWNIED 361 (595)
T ss_dssp TTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCS---CEEEEEE-CTTSEEEEEETTTT---EEEEEEHHH
T ss_pred CCCCeEEEEECcccccccccccCcccceEEEcCCCC---CcceEEE-CCCCeEEEEEecCC---cEEEEEhhH
Confidence 7889999988653 444433322 2555543 34458888766554 677788776
No 204
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=93.90 E-value=5.3 Score=42.70 Aligned_cols=151 Identities=15% Similarity=0.241 Sum_probs=88.4
Q ss_pred CCEEEEEEc-cCCeEEEEeCCCCcEeEEEeccCcc--ccCCcccccccccc---ccCCeEEEE-E--------------C
Q 003800 95 GKYVITLSS-DGSTLRAWNLPDGQMVWESFLRGSK--HSKPLLLVPTNLKV---DKDSLILVS-S--------------K 153 (794)
Q Consensus 95 g~~~V~Vs~-~g~~v~A~d~~tG~llWe~~l~~~~--~s~~~~~~~~~~~~---~~~~~V~V~-~--------------~ 153 (794)
.++.+++|. ..++|..||+.+|.. .+..+.... ........+ +.. +.++.++|. . +
T Consensus 23 ~~g~~~vs~l~~g~V~~~~~~~~~~-~~~~~~~~s~~g~~~~~~sG--l~~~~~D~~grL~vv~~~~~af~~~g~~~~g~ 99 (334)
T 2p9w_A 23 TRQVFYQSNLYKGRIEVYNPKTQSH-FNVVIDGASSNGDGEQQMSG--LSLLTHDNSKRLFAVMKNAKSFNFADQSSHGA 99 (334)
T ss_dssp TTTEEEEEETTTTEEEEECTTTCCE-EEECCTTTCCSSCCSEEEEE--EEESSSSSCCEEEEEEEETTTTCTTSCCSSSC
T ss_pred CCCEEEEEeccCCEEEEEcCCCCeE-EEEecCCccccCCCcceeeE--EEEeccCCCCcEEEEEcccccccccccccCCC
Confidence 356788877 568999999976644 355333211 000111122 133 345666663 3 4
Q ss_pred CEEEEEECC---CCcEEEEEeccCcc-----------eeeeeEEEEecCCEEEEEEecC-CceeEEEEEEcCCCcee--e
Q 003800 154 GCLHAVSSI---DGEILWTRDFAAES-----------VEVQQVIQLDESDQIYVVGYAG-SSQFHAYQINAMNGELL--N 216 (794)
Q Consensus 154 g~l~ald~~---tG~~~W~~~~~~~~-----------~~~~~~v~s~~~~~vyv~~~~g-~~~~~v~ald~~tG~~~--w 216 (794)
..|.++|.. ||+++|...++... ..+-.+. .-..|.+||.+..+ + .++-+|+. |+.+ |
T Consensus 100 ~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDva-vD~~GnaYVt~s~~~~---~I~rV~pd-G~~~~~~ 174 (334)
T 2p9w_A 100 SSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSA-QDRDGNSYVAFALGMP---AIARVSAD-GKTVSTF 174 (334)
T ss_dssp CEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEE-ECTTSCEEEEEEESSC---EEEEECTT-SCCEEEE
T ss_pred CEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeE-ECCCCCEEEeCCCCCC---eEEEEeCC-CCEEeee
Confidence 779999999 99999999875211 0011222 24678999866555 4 78888875 5522 4
Q ss_pred eeeeecc---cCccCceEEE-cCcEEEEEECCCCeEEEEEeec
Q 003800 217 HETAAFS---GGFVGDVALV-SSDTLVTLDTTRSILVTVSFKN 255 (794)
Q Consensus 217 ~~~v~~~---~~~s~~~~~v-g~~~lv~~d~~~g~L~v~~l~s 255 (794)
-.....+ .++++ +++. .++.++..+. .+.|...|+.+
T Consensus 175 ~~~~~~~~~~~G~nG-Iv~~pdg~~Liv~~~-~g~L~~fD~~~ 215 (334)
T 2p9w_A 175 AWESGNGGQRPGYSG-ITFDPHSNKLIAFGG-PRALTAFDVSK 215 (334)
T ss_dssp EECCCCSSSCCSCSE-EEEETTTTEEEEESS-SSSEEEEECSS
T ss_pred eecCCCcccccCcce-EEEeCCCCEEEEEcC-CCeEEEEcCCC
Confidence 3211111 12333 4444 4567777876 89999999884
No 205
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=93.80 E-value=14 Score=43.71 Aligned_cols=152 Identities=9% Similarity=0.075 Sum_probs=86.7
Q ss_pred CCEEEEEeCCCEEEEEECcCCccceEEEc-----Ccc---cceeeeeeeeCCEEEEEEccCCeEEEEeCCCCcEeEEEec
Q 003800 53 RKRVVVSTEENVIASLDLRHGEIFWRHVL-----GIN---DVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFL 124 (794)
Q Consensus 53 ~~~Vyv~t~~g~l~ALn~~tG~ivWR~~l-----~~~---~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~l 124 (794)
++.|+++|..+-|..++++++...+-... ... ..+..+ ....++.+.+++.++.|..+|..+++..+-.
T Consensus 323 ~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i-~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~-- 399 (781)
T 3v9f_A 323 FNNIWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSV-CDDGQGKLWIGTDGGGINVFENGKRVAIYNK-- 399 (781)
T ss_dssp SCCEEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEE-EECTTSCEEEEEBSSCEEEEETTEEEEECC---
T ss_pred CCCEEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEE-EEcCCCCEEEEeCCCcEEEEECCCCeEEEcc--
Confidence 56799999888899999988765432211 111 123333 2344566777775556999999877654321
Q ss_pred cCccccCCccccccccccccCCeEEEEE-CCEEEEEECCCCcEEEEEeccCcceeeeeEEEEecCCEEEEEEecCCceeE
Q 003800 125 RGSKHSKPLLLVPTNLKVDKDSLILVSS-KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFH 203 (794)
Q Consensus 125 ~~~~~s~~~~~~~~~~~~~~~~~V~V~~-~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~s~~~~~vyv~~~~g~~~~~ 203 (794)
....+.. ..+.. +..+.++.+++.+ ++.|+.+|..+|+...-.....+......+. ...++.+++.+. + -
T Consensus 400 ~~~~~~~-~~v~~--i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~-~d~~g~lwigt~-~----G 470 (781)
T 3v9f_A 400 ENRELLS-NSVLC--SLKDSEGNLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFY-EDKNKKIWIGTH-A----G 470 (781)
T ss_dssp ----CCC-SBEEE--EEECTTSCEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEE-ECTTSEEEEEET-T----E
T ss_pred CCCCCCC-cceEE--EEECCCCCEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEE-ECCCCCEEEEEC-C----c
Confidence 1111100 01111 1334467788876 5789999999987543321111111122222 235788998665 3 4
Q ss_pred EEEEEcCCCceee
Q 003800 204 AYQINAMNGELLN 216 (794)
Q Consensus 204 v~ald~~tG~~~w 216 (794)
++.+|+.+|+...
T Consensus 471 l~~~~~~~~~~~~ 483 (781)
T 3v9f_A 471 VFVIDLASKKVIH 483 (781)
T ss_dssp EEEEESSSSSCCE
T ss_pred eEEEeCCCCeEEe
Confidence 8999999987654
No 206
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=93.79 E-value=10 Score=42.21 Aligned_cols=108 Identities=18% Similarity=0.279 Sum_probs=59.2
Q ss_pred CCCEEEEEeCCCEEEEEECcCCccceEEEcCcccceeeeeeeeCCEEEEEEccCCeEEEEeCCCCcEeEEEeccCccccC
Q 003800 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSK 131 (794)
Q Consensus 52 ~~~~Vyv~t~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~l~~~~~s~ 131 (794)
++..+++++.+|.|.-.|. +|+.+....-.. ..+..+....++..++.++.++.++.||. +|+++-......... .
T Consensus 191 ~~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~-~~v~~~~~s~dg~~l~~~~~d~~i~~w~~-~~~~~~~~~~~~~~v-~ 266 (577)
T 2ymu_A 191 DGQTIASASDDKTVKLWNR-NGQLLQTLTGHS-SSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSV-N 266 (577)
T ss_dssp TSSCEEEEETTSEEEEECT-TSCEEEEEECCS-SCEEEEEECTTSSCEEEEETTSCEEEECT-TSCEEEEECCCSSCE-E
T ss_pred CCCEEEEEcCCCEEEEEeC-CCcEEEEEecCC-CCEEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEEecCCCCE-E
Confidence 3556888999999988884 677765543322 23444422233334444555679999995 677776554433221 1
Q ss_pred CccccccccccccCCeEEEEE-CCEEEEEECCCCcEEEEE
Q 003800 132 PLLLVPTNLKVDKDSLILVSS-KGCLHAVSSIDGEILWTR 170 (794)
Q Consensus 132 ~~~~~~~~~~~~~~~~V~V~~-~g~l~ald~~tG~~~W~~ 170 (794)
.+.+.+ + +..++..+ ++.+...|. +|+..-..
T Consensus 267 ~v~~~~-----d-~~~l~~~~~d~~i~~w~~-~~~~~~~~ 299 (577)
T 2ymu_A 267 GVAFRP-----D-GQTIASASDDKTVKLWNR-NGQLLQTL 299 (577)
T ss_dssp EEEECT-----T-SSEEEEEETTSCEEEEET-TSCEEEEE
T ss_pred EEEEcC-----C-CCEEEEEeCCCEEEEEeC-CCcEEEEE
Confidence 111111 1 23333343 777777774 45554443
No 207
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=93.78 E-value=6.6 Score=46.62 Aligned_cols=151 Identities=9% Similarity=0.058 Sum_probs=87.1
Q ss_pred CCEEEEEeCCCEEEEEECcCCccceEEEcC---c----ccceeeeeeeeCCEE-EEEEccCCeEEEEeCCCCcEeEEEec
Q 003800 53 RKRVVVSTEENVIASLDLRHGEIFWRHVLG---I----NDVVDGIDIALGKYV-ITLSSDGSTLRAWNLPDGQMVWESFL 124 (794)
Q Consensus 53 ~~~Vyv~t~~g~l~ALn~~tG~ivWR~~l~---~----~~~i~~l~~~~g~~~-V~Vs~~g~~v~A~d~~tG~llWe~~l 124 (794)
++.|+++|..+-|..+|+++|+..+-..-. . ...+..+ ....++. +.+++.++.|..+|..+|+. +....
T Consensus 367 ~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i-~~d~~g~~lWigt~~~Gl~~~d~~~~~~-~~~~~ 444 (795)
T 4a2l_A 367 DKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAV-YVDEKKSLVYIGTHAGGLSILHRNSGQV-ENFNQ 444 (795)
T ss_dssp TSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEE-EEETTTTEEEEEETTTEEEEEETTTCCE-EEECT
T ss_pred CCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEE-EEcCCCCEEEEEeCcCceeEEeCCCCcE-EEeec
Confidence 667999999988999999998754322111 0 1123333 2234454 77777666799999998874 33332
Q ss_pred cCccccCCccccccccccccCCeEEEEECCEEEEEECCCCcEEEEEecc----CcceeeeeEEEEecCCEEEEEEecCCc
Q 003800 125 RGSKHSKPLLLVPTNLKVDKDSLILVSSKGCLHAVSSIDGEILWTRDFA----AESVEVQQVIQLDESDQIYVVGYAGSS 200 (794)
Q Consensus 125 ~~~~~s~~~~~~~~~~~~~~~~~V~V~~~g~l~ald~~tG~~~W~~~~~----~~~~~~~~~v~s~~~~~vyv~~~~g~~ 200 (794)
..+.+. ...+.. +..+.++.+++.+.+.|+++|..+|+........ .+......+. ...++.+++.+. ++
T Consensus 445 ~~~~l~-~~~v~~--i~~d~~g~lwigt~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~-~d~~g~lWigt~-~G- 518 (795)
T 4a2l_A 445 RNSQLV-NENVYA--ILPDGEGNLWLGTLSALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLF-RDSHKRLWIGGE-EG- 518 (795)
T ss_dssp TTSCCS-CSCEEE--EEECSSSCEEEEESSCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEE-ECTTCCEEEEES-SC-
T ss_pred CCCCcC-CCeeEE--EEECCCCCEEEEecCceeEEeCCCCeEEEccccccccccCCceEEEEE-ECCCCCEEEEeC-Cc-
Confidence 111110 001111 1334457788876677999999988654322110 0011122222 246788998766 42
Q ss_pred eeEEEEEEcCCCce
Q 003800 201 QFHAYQINAMNGEL 214 (794)
Q Consensus 201 ~~~v~ald~~tG~~ 214 (794)
++.+|+.+++.
T Consensus 519 ---l~~~~~~~~~~ 529 (795)
T 4a2l_A 519 ---LSVFKQEGLDI 529 (795)
T ss_dssp ---EEEEEEETTEE
T ss_pred ---eEEEeCCCCeE
Confidence 88899988865
No 208
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=93.49 E-value=2.8 Score=49.67 Aligned_cols=197 Identities=7% Similarity=-0.042 Sum_probs=98.4
Q ss_pred CCEEEEEeCCCEEEEEECcCCccceEEEcC-cccceeeeeeeeC--CEEEEEEccCCeEEEEeCCCCcEeEEEec--cCc
Q 003800 53 RKRVVVSTEENVIASLDLRHGEIFWRHVLG-INDVVDGIDIALG--KYVITLSSDGSTLRAWNLPDGQMVWESFL--RGS 127 (794)
Q Consensus 53 ~~~Vyv~t~~g~l~ALn~~tG~ivWR~~l~-~~~~i~~l~~~~g--~~~V~Vs~~g~~v~A~d~~tG~llWe~~l--~~~ 127 (794)
++.+++++.+|.|...|.++|+..=...+. ....+..+..... +..++.++.++.|+.||..++...-.... ...
T Consensus 67 ~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~ 146 (753)
T 3jro_A 67 GTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAI 146 (753)
T ss_dssp CSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSS
T ss_pred CCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCC
Confidence 567999999999999999998621112222 2223444322222 44555566668999999998843222222 211
Q ss_pred cccCCccccccc--------cccccCCeEEEEE-CCEEEEEECCCCcEEEEEec--cCcceeeeeEEEEecC--CEEEEE
Q 003800 128 KHSKPLLLVPTN--------LKVDKDSLILVSS-KGCLHAVSSIDGEILWTRDF--AAESVEVQQVIQLDES--DQIYVV 194 (794)
Q Consensus 128 ~~s~~~~~~~~~--------~~~~~~~~V~V~~-~g~l~ald~~tG~~~W~~~~--~~~~~~~~~~v~s~~~--~~vyv~ 194 (794)
.. ..+.+.+.. ...+ +..+++.+ +|.++..|..+|...|.... .........+..+..+ +..++.
T Consensus 147 ~v-~~l~~~p~~~~~~~~~~~~~d-~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s 224 (753)
T 3jro_A 147 GV-NSASWAPATIEEDGEHNGTKE-SRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLAS 224 (753)
T ss_dssp CE-EEEEECCCC---------CGG-GCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEE
T ss_pred ce-EEEEecCcccccccccccCCC-CCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEE
Confidence 11 011111100 0001 23344443 88888888888765544322 1111112223222221 344444
Q ss_pred E-ecCCceeEEEEEEcCCCceeeeeeeecccCccC---ceEEE-cCcEEEEEECCCCeEEEEEeecc
Q 003800 195 G-YAGSSQFHAYQINAMNGELLNHETAAFSGGFVG---DVALV-SSDTLVTLDTTRSILVTVSFKNR 256 (794)
Q Consensus 195 ~-~~g~~~~~v~ald~~tG~~~w~~~v~~~~~~s~---~~~~v-g~~~lv~~d~~~g~L~v~~l~sg 256 (794)
+ .+| .+..+|..+|+..+...+.......+ .+.+- .+..+++.. .+|.+++-++.++
T Consensus 225 ~s~Dg----~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s-~Dg~I~vwd~~~~ 286 (753)
T 3jro_A 225 VSQDR----TCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSG-GDNKVTLWKENLE 286 (753)
T ss_dssp EESSS----CEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEEC-SSSCEECCBCCSS
T ss_pred EecCC----EEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEc-CCCEEEEEecCCC
Confidence 3 344 67788888886554443322111111 12222 334555554 4678888887754
No 209
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=93.39 E-value=9 Score=41.28 Aligned_cols=155 Identities=13% Similarity=0.104 Sum_probs=76.6
Q ss_pred CCEEEEEeC---CCEEEEEEC-cCCccceEEEcCccc-ceeeeeeeeCCEEEEE-EccCCeEEEEeCCCCcEeEEEeccC
Q 003800 53 RKRVVVSTE---ENVIASLDL-RHGEIFWRHVLGIND-VVDGIDIALGKYVITL-SSDGSTLRAWNLPDGQMVWESFLRG 126 (794)
Q Consensus 53 ~~~Vyv~t~---~g~l~ALn~-~tG~ivWR~~l~~~~-~i~~l~~~~g~~~V~V-s~~g~~v~A~d~~tG~llWe~~l~~ 126 (794)
.++++..+. ++.|..++. .+|+.+=.+.+.... .+-.+..+.|++..++ ++.+++|+.||+++|+.+.......
T Consensus 144 ~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~ 223 (356)
T 2w18_A 144 KRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDD 223 (356)
T ss_dssp TTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC
T ss_pred CCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCC
Confidence 344444443 666666666 446654444433321 1212222234333344 4567899999999999998886432
Q ss_pred ccccCCccccccccccccCCeEEE-----------E---ECCEEEEEECCCCcEEEEEec--cCcceeeeeEEEEecCCE
Q 003800 127 SKHSKPLLLVPTNLKVDKDSLILV-----------S---SKGCLHAVSSIDGEILWTRDF--AAESVEVQQVIQLDESDQ 190 (794)
Q Consensus 127 ~~~s~~~~~~~~~~~~~~~~~V~V-----------~---~~g~l~ald~~tG~~~W~~~~--~~~~~~~~~~v~s~~~~~ 190 (794)
... .....+ +...++..++ . .++++...|..+|+.+-.... +.+.. . ..+.....+.
T Consensus 224 ~~v-~~v~~v----afSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~-~-~~lsg~~sg~ 296 (356)
T 2w18_A 224 SYQ-ASVCHK----AYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQA-G-RFLEGDVKDH 296 (356)
T ss_dssp ----CCCEEE----EEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCC-C-CEEEEEEETT
T ss_pred cce-eeeEEE----EECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCc-c-eeEccccCCC
Confidence 211 011000 0011233322 1 267788888888876544321 21110 0 0110001122
Q ss_pred EEEEE-ecCCceeEEEEEEcCCCceeeee
Q 003800 191 IYVVG-YAGSSQFHAYQINAMNGELLNHE 218 (794)
Q Consensus 191 vyv~~-~~g~~~~~v~ald~~tG~~~w~~ 218 (794)
+.+.+ .+| .+...|+.+|+.+-+.
T Consensus 297 ~lASgS~Dg----TIkIWDl~tGk~l~tL 321 (356)
T 2w18_A 297 CAAAILTSG----TIAIWDLLLGQCTALL 321 (356)
T ss_dssp EEEEEETTS----CEEEEETTTCSEEEEE
T ss_pred EEEEEcCCC----cEEEEECCCCcEEEEe
Confidence 33333 344 6778899999988765
No 210
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=93.38 E-value=9.1 Score=40.31 Aligned_cols=143 Identities=13% Similarity=0.084 Sum_probs=75.1
Q ss_pred CCEEEEEeCCCEEEEEECcCC-ccceEEEcCcccceeeeeeeeCCEEEEE-EccCCeEEEEeCCCCcE------------
Q 003800 53 RKRVVVSTEENVIASLDLRHG-EIFWRHVLGINDVVDGIDIALGKYVITL-SSDGSTLRAWNLPDGQM------------ 118 (794)
Q Consensus 53 ~~~Vyv~t~~g~l~ALn~~tG-~ivWR~~l~~~~~i~~l~~~~g~~~V~V-s~~g~~v~A~d~~tG~l------------ 118 (794)
.+.++++. ++.+...|.+++ +.+.+... +..+..+ ....+++. ++.++.|+.||..+|+.
T Consensus 110 ~~~~~~~~-~~~i~i~d~~~~~~~~~~~~~--~~~~~~~---s~~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~ 183 (355)
T 3vu4_A 110 REFIVVSY-GDVISVFKFGNPWKRITDDIR--FGGVCEF---SNGLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKA 183 (355)
T ss_dssp SSEEEEEE-TTEEEEEESSTTCCBSSCCEE--EEEEEEE---ETTEEEEEESSCTTCEEEEECCC---------------
T ss_pred CCEEEEEE-cCEEEEEECCCCceeeEEecc--CCceEEE---EccEEEEeCCCcCcEEEEEECCCCCccccccccccccc
Confidence 44555554 567888898888 66655433 1111112 12444444 34568999999999872
Q ss_pred ----eEEEeccCccccCCccccccccccccCCeEEE-EE-CCE-EEEEECCCCcEEEEEecc-CcceeeeeEEEEecCCE
Q 003800 119 ----VWESFLRGSKHSKPLLLVPTNLKVDKDSLILV-SS-KGC-LHAVSSIDGEILWTRDFA-AESVEVQQVIQLDESDQ 190 (794)
Q Consensus 119 ----lWe~~l~~~~~s~~~~~~~~~~~~~~~~~V~V-~~-~g~-l~ald~~tG~~~W~~~~~-~~~~~~~~~v~s~~~~~ 190 (794)
+-......... ..+ ....++..++ .+ ++. +...|..+|+.+-++... ... ....+..+.++..
T Consensus 184 ~~p~~~~~~~h~~~v----~~~----~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~-~v~~~~~s~~~~~ 254 (355)
T 3vu4_A 184 ILGKGVLIKAHTNPI----KMV----RLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRA-DVVDMKWSTDGSK 254 (355)
T ss_dssp ---CCEEECCCSSCE----EEE----EECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCS-CEEEEEECTTSCE
T ss_pred cCcccEEEEccCCce----EEE----EECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCC-cEEEEEECCCCCE
Confidence 22222222211 111 1122444444 33 887 999999999998888732 111 1222322223333
Q ss_pred EEEEEecCCceeEEEEEEcCCCce
Q 003800 191 IYVVGYAGSSQFHAYQINAMNGEL 214 (794)
Q Consensus 191 vyv~~~~g~~~~~v~ald~~tG~~ 214 (794)
+...+.+| .+...|..++..
T Consensus 255 l~s~s~d~----~v~iw~~~~~~~ 274 (355)
T 3vu4_A 255 LAVVSDKW----TLHVFEIFNDQD 274 (355)
T ss_dssp EEEEETTC----EEEEEESSCCSC
T ss_pred EEEEECCC----EEEEEEccCCCC
Confidence 44333344 677788877653
No 211
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=93.38 E-value=3 Score=48.86 Aligned_cols=194 Identities=13% Similarity=-0.007 Sum_probs=93.2
Q ss_pred cCCCEEEEEeC-CC----EEEEEECcCCccceEEEcCcccceeeeeee-eCCEEEEEEccC---------------CeEE
Q 003800 51 TGRKRVVVSTE-EN----VIASLDLRHGEIFWRHVLGINDVVDGIDIA-LGKYVITLSSDG---------------STLR 109 (794)
Q Consensus 51 ~~~~~Vyv~t~-~g----~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~-~g~~~V~Vs~~g---------------~~v~ 109 (794)
+++++|.+++. .| .|..+|.++|+.+=. .+... .+..+.-. .|+.+++.+..+ ..|+
T Consensus 134 PDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~-~~~~~-~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~ 211 (710)
T 2xdw_A 134 EDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD-VLERV-KFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLY 211 (710)
T ss_dssp TTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE-EEEEE-CSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEE
T ss_pred CCCCEEEEEEcCCCCceEEEEEEECCCCCCCcc-cccCc-ccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEE
Confidence 44555554444 33 899999999976421 11111 11122112 455566644332 2389
Q ss_pred EEeCCCCc----EeEEEeccCccccCCccccccccccccCCeEEEE-E-----CCEEEEEECCC------CcEEEEEecc
Q 003800 110 AWNLPDGQ----MVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVS-S-----KGCLHAVSSID------GEILWTRDFA 173 (794)
Q Consensus 110 A~d~~tG~----llWe~~l~~~~~s~~~~~~~~~~~~~~~~~V~V~-~-----~g~l~ald~~t------G~~~W~~~~~ 173 (794)
.|+..+|. ++++........ ..+.+ ..+ ++.+++. . +..++.+|..+ |...|..-.+
T Consensus 212 ~~~l~t~~~~~~~v~~~~~~~~~~-~~~~~-----SpD-g~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~ 284 (710)
T 2xdw_A 212 YHVLGTDQSEDILCAEFPDEPKWM-GGAEL-----SDD-GRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLID 284 (710)
T ss_dssp EEETTSCGGGCEEEECCTTCTTCE-EEEEE-----CTT-SCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEEC
T ss_pred EEECCCCcccceEEeccCCCCeEE-EEEEE-----cCC-CCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeC
Confidence 99988886 333321111000 01111 122 2344443 2 45788888876 6322322111
Q ss_pred CcceeeeeEEEEecCCEEEEEEecCCceeEEEEEEcCCCce-eeeeeeeccc--CccCceEEE-cCcEEEEEECCCC--e
Q 003800 174 AESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGEL-LNHETAAFSG--GFVGDVALV-SSDTLVTLDTTRS--I 247 (794)
Q Consensus 174 ~~~~~~~~~v~s~~~~~vyv~~~~g~~~~~v~ald~~tG~~-~w~~~v~~~~--~~s~~~~~v-g~~~lv~~d~~~g--~ 247 (794)
...... ..+ +..++.+|+.+..++...+++.+|+.+|+. .|+.-+.... .+. .+.+. ++.++++.. .++ .
T Consensus 285 ~~~~~~-~~~-s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~lv~~~~-~~g~~~ 360 (710)
T 2xdw_A 285 NFEGEY-DYV-TNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLE-WVACVRSNFLVLCYL-HDVKNT 360 (710)
T ss_dssp SSSSCE-EEE-EEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEE-EEEEETTTEEEEEEE-ETTEEE
T ss_pred CCCcEE-EEE-eccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEE-EEEEEcCCEEEEEEE-ECCEEE
Confidence 111111 122 356788888776554456899999998864 4554332211 121 23333 333444433 233 4
Q ss_pred EEEEEeecce
Q 003800 248 LVTVSFKNRK 257 (794)
Q Consensus 248 L~v~~l~sg~ 257 (794)
|++.++.+|+
T Consensus 361 l~~~~~~~g~ 370 (710)
T 2xdw_A 361 LQLHDLATGA 370 (710)
T ss_dssp EEEEETTTCC
T ss_pred EEEEECCCCC
Confidence 6777776665
No 212
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=93.30 E-value=4.9 Score=43.62 Aligned_cols=175 Identities=11% Similarity=0.013 Sum_probs=84.1
Q ss_pred CcCCccceEEEcCcccceeeeeeeeC-CEEEEEEccCCeEEEEeCCC----------CcEeEEEeccCccccCCcccccc
Q 003800 70 LRHGEIFWRHVLGINDVVDGIDIALG-KYVITLSSDGSTLRAWNLPD----------GQMVWESFLRGSKHSKPLLLVPT 138 (794)
Q Consensus 70 ~~tG~ivWR~~l~~~~~i~~l~~~~g-~~~V~Vs~~g~~v~A~d~~t----------G~llWe~~l~~~~~s~~~~~~~~ 138 (794)
.++|++.=.+.+...+.+..+..... ..+++.++.++.|+.||..+ ++.+.......... ..+.+.+
T Consensus 114 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v-~~l~~~~- 191 (430)
T 2xyi_A 114 SVCGKIEIEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEG-YGLSWNP- 191 (430)
T ss_dssp ----CEEEEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCC-CCEEECT-
T ss_pred CCCCceEEEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCe-EEEEeCC-
Confidence 34444443444433334444432222 34666566667999999987 67777666554332 2222221
Q ss_pred ccccccCCeEEEE-ECCEEEEEECCCCcE-EEEEe----ccCcceeeeeEEEEecCCEEEEEEecCCceeEEEEEEcCCC
Q 003800 139 NLKVDKDSLILVS-SKGCLHAVSSIDGEI-LWTRD----FAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNG 212 (794)
Q Consensus 139 ~~~~~~~~~V~V~-~~g~l~ald~~tG~~-~W~~~----~~~~~~~~~~~v~s~~~~~vyv~~~~g~~~~~v~ald~~tG 212 (794)
...+.++.. .+|.+...|..++.. .+... ..........+.....++.+++.+...+ .+..+|..++
T Consensus 192 ----~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg---~i~i~d~~~~ 264 (430)
T 2xyi_A 192 ----NLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQ---KLMIWDTRNN 264 (430)
T ss_dssp ----TSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTS---EEEEEETTCS
T ss_pred ----CCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCC---eEEEEECCCC
Confidence 212234444 388999999887432 11111 0011111222221222455555554333 7888999888
Q ss_pred c---eeeeeeeecccCccCceEEE--cCcEEEEEECCCCeEEEEEeecc
Q 003800 213 E---LLNHETAAFSGGFVGDVALV--SSDTLVTLDTTRSILVTVSFKNR 256 (794)
Q Consensus 213 ~---~~w~~~v~~~~~~s~~~~~v--g~~~lv~~d~~~g~L~v~~l~sg 256 (794)
. .+.... .....+.. +.+- +..++++.. ..|.+.+.|+.+.
T Consensus 265 ~~~~~~~~~~-~~~~~v~~-i~~~p~~~~~l~tg~-~dg~v~vwd~~~~ 310 (430)
T 2xyi_A 265 NTSKPSHTVD-AHTAEVNC-LSFNPYSEFILATGS-ADKTVALWDLRNL 310 (430)
T ss_dssp CSSSCSEEEE-CCSSCEEE-EEECSSCTTEEEEEE-TTSEEEEEETTCT
T ss_pred CCCcceeEee-cCCCCeEE-EEeCCCCCCEEEEEe-CCCeEEEEeCCCC
Confidence 3 444332 11111211 1111 223565555 4688999998873
No 213
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=93.12 E-value=4.5 Score=42.63 Aligned_cols=112 Identities=21% Similarity=0.219 Sum_probs=60.5
Q ss_pred CCEEEEEeC---CC--EEEEEECcCCccc----eEEEcCcc-cceeeeeeeeCCEEEEEEc-c-----CCeEEEEeCCCC
Q 003800 53 RKRVVVSTE---EN--VIASLDLRHGEIF----WRHVLGIN-DVVDGIDIALGKYVITLSS-D-----GSTLRAWNLPDG 116 (794)
Q Consensus 53 ~~~Vyv~t~---~g--~l~ALn~~tG~iv----WR~~l~~~-~~i~~l~~~~g~~~V~Vs~-~-----g~~v~A~d~~tG 116 (794)
++++|++.. .+ .|.-++ +|++. |....... ....++. ...++.+++.. . +.+|..||+.+|
T Consensus 27 ~g~~~v~~~~~~~~~~~l~~~~--~g~~~~~p~~~~~~~~~~~~p~gv~-~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg 103 (343)
T 2qe8_A 27 DGRLFLSLHQFYQPEMQVAELT--QDGLIPFPPQSGNAIITFDTVLGIK-SDGNGIVWMLDNGNQSKSVPKLVAWDTLNN 103 (343)
T ss_dssp TSCEEEEECGGGCCSCSEEEEE--TTEEEESCCCCSSCCCCCSCEEEEE-ECSSSEEEEEECHHHHTSCCEEEEEETTTT
T ss_pred CCCEEEEeCCCCCCceEEEEEC--CCCeecCCCcccCcccceeEeeEEE-EcCCCcEEEEcCCCCcCCCCeEEEEECCCC
Confidence 678888852 34 788888 77643 11100000 1122332 23334455532 2 468999999999
Q ss_pred cEeEEEeccCccccCCcccccccccccc-CCeEEEEE-----CCEEEEEECCCCcEEEEE
Q 003800 117 QMVWESFLRGSKHSKPLLLVPTNLKVDK-DSLILVSS-----KGCLHAVSSIDGEILWTR 170 (794)
Q Consensus 117 ~llWe~~l~~~~~s~~~~~~~~~~~~~~-~~~V~V~~-----~g~l~ald~~tG~~~W~~ 170 (794)
+++-...+..... ... ..+.....+. ++.+|+.. ++.++.+|..+|+. |..
T Consensus 104 ~~~~~~~~~~~~~-~~~-~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~-~r~ 160 (343)
T 2qe8_A 104 QLSRVIYLPPPIT-LSN-SFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLA-ARV 160 (343)
T ss_dssp EEEEEEECCTTTS-CTT-CCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCE-EEE
T ss_pred eEEEEEECChhhc-ccc-cccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCE-EEE
Confidence 9877766643211 000 0001112332 45777762 57899999988874 554
No 214
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=93.10 E-value=7.3 Score=40.37 Aligned_cols=188 Identities=11% Similarity=0.089 Sum_probs=97.6
Q ss_pred CCEEEEEeCCCEEEEEECcCCccceEEEcCccc--c-eeeeeeeeCCEEEEEEccC----C-------eEEEEeCCCCcE
Q 003800 53 RKRVVVSTEENVIASLDLRHGEIFWRHVLGIND--V-VDGIDIALGKYVITLSSDG----S-------TLRAWNLPDGQM 118 (794)
Q Consensus 53 ~~~Vyv~t~~g~l~ALn~~tG~ivWR~~l~~~~--~-i~~l~~~~g~~~V~Vs~~g----~-------~v~A~d~~tG~l 118 (794)
.+.||+....+ +.++|+.+++ |+.. +.+. . .....+..++.++++||.. + .+..+|+.++
T Consensus 15 ~~~i~~~GG~~-~~~yd~~~~~--W~~~-~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~-- 88 (318)
T 2woz_A 15 KDLILLVNDTA-AVAYDPMENE--CYLT-ALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSS-- 88 (318)
T ss_dssp EEEEEEECSSE-EEEEETTTTE--EEEE-EECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTT--
T ss_pred cchhhhccccc-eEEECCCCCc--eecc-cCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCC--
Confidence 34677776654 8999999986 9872 2111 0 1111123466666667721 1 2788998866
Q ss_pred eEEEeccCccccCCccccccccccccCCeEEEEE--C-------CEEEEEECCCCcEEEEEeccCcceeeeeEEEEecCC
Q 003800 119 VWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSS--K-------GCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESD 189 (794)
Q Consensus 119 lWe~~l~~~~~s~~~~~~~~~~~~~~~~~V~V~~--~-------g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~s~~~~ 189 (794)
.|+.....+.. ......... ++.+++.. + ..+..+|..++ .|+.-.+.+.-...... ...++
T Consensus 89 ~W~~~~~~p~~-----r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~-~~~~~ 159 (318)
T 2woz_A 89 EWVGLPPLPSA-----RCLFGLGEV-DDKIYVVAGKDLQTEASLDSVLCYDPVAA--KWSEVKNLPIKVYGHNV-ISHNG 159 (318)
T ss_dssp EEEECSCBSSC-----BCSCEEEEE-TTEEEEEEEEBTTTCCEEEEEEEEETTTT--EEEEECCCSSCEESCEE-EEETT
T ss_pred cEEECCCCCcc-----ccccceEEE-CCEEEEEcCccCCCCcccceEEEEeCCCC--CEeECCCCCCcccccEE-EEECC
Confidence 57754222111 111000122 56677753 1 35888888776 58765433321111111 23688
Q ss_pred EEEEEEecC---CceeEEEEEEcCCCceeeeeeeecccCccC-ceEEEcCcEEEEEECC----CCeEEEEEeecce
Q 003800 190 QIYVVGYAG---SSQFHAYQINAMNGELLNHETAAFSGGFVG-DVALVSSDTLVTLDTT----RSILVTVSFKNRK 257 (794)
Q Consensus 190 ~vyv~~~~g---~~~~~v~ald~~tG~~~w~~~v~~~~~~s~-~~~~vg~~~lv~~d~~----~g~L~v~~l~sg~ 257 (794)
.+|+++... ...-.+..+|+.++ .|+..-..|..... .+...++.+++..-.. ...+.+.|+.+++
T Consensus 160 ~iyv~GG~~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 233 (318)
T 2woz_A 160 MIYCLGGKTDDKKCTNRVFIYNPKKG--DWKDLAPMKTPRSMFGVAIHKGKIVIAGGVTEDGLSASVEAFDLKTNK 233 (318)
T ss_dssp EEEEECCEESSSCBCCCEEEEETTTT--EEEEECCCSSCCBSCEEEEETTEEEEEEEEETTEEEEEEEEEETTTCC
T ss_pred EEEEEcCCCCCCCccceEEEEcCCCC--EEEECCCCCCCcccceEEEECCEEEEEcCcCCCCccceEEEEECCCCe
Confidence 999876421 11235889999876 47765444444433 2333455555443111 1235566666655
No 215
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=93.06 E-value=1.9 Score=51.37 Aligned_cols=150 Identities=10% Similarity=-0.018 Sum_probs=87.9
Q ss_pred CCEEEEEeCCCEEEEEECcCCccceEEEcCc---ccceeeeeeeeCCEEEEEEccCCeEEEEeCCCCcEeEEEeccCccc
Q 003800 53 RKRVVVSTEENVIASLDLRHGEIFWRHVLGI---NDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKH 129 (794)
Q Consensus 53 ~~~Vyv~t~~g~l~ALn~~tG~ivWR~~l~~---~~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~l~~~~~ 129 (794)
++.|+++|..+-|..+|+++|+. ++-... ...+..+ ....++.+.+++. +.|..+|..+|+...-........
T Consensus 417 ~g~lWigt~~~Gl~~~~~~~~~~--~~~~~~~~~~~~v~~i-~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~ 492 (781)
T 3v9f_A 417 EGNLWFGTYLGNISYYNTRLKKF--QIIELEKNELLDVRVF-YEDKNKKIWIGTH-AGVFVIDLASKKVIHHYDTSNSQL 492 (781)
T ss_dssp TSCEEEEETTEEEEEECSSSCEE--EECCSTTTCCCCEEEE-EECTTSEEEEEET-TEEEEEESSSSSCCEEECTTTSSC
T ss_pred CCCEEEEeccCCEEEEcCCCCcE--EEeccCCCCCCeEEEE-EECCCCCEEEEEC-CceEEEeCCCCeEEecccCccccc
Confidence 67899999888899999999864 332211 1123333 2344567777766 469999999988665443321111
Q ss_pred cCCccccccccccccCCeEEEEE-CCEEEEEECCCCcEEEEEeccC--cceeeeeEEEEecCCEEEEEEecCCceeEEEE
Q 003800 130 SKPLLLVPTNLKVDKDSLILVSS-KGCLHAVSSIDGEILWTRDFAA--ESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQ 206 (794)
Q Consensus 130 s~~~~~~~~~~~~~~~~~V~V~~-~g~l~ald~~tG~~~W~~~~~~--~~~~~~~~v~s~~~~~vyv~~~~g~~~~~v~a 206 (794)
....+. .+..+.++.+.+.+ ++.|+++|..+++... +.... +......+. ...++.+++.+..| -+..
T Consensus 493 -~~~~i~--~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~-~~~~~~l~~~~i~~i~-~d~~g~lWi~T~~G----lv~~ 563 (781)
T 3v9f_A 493 -LENFVR--SIAQDSEGRFWIGTFGGGVGIYTPDMQLVRK-FNQYEGFCSNTINQIY-RSSKGQMWLATGEG----LVCF 563 (781)
T ss_dssp -SCSCEE--EEEECTTCCEEEEESSSCEEEECTTCCEEEE-ECTTTTCSCSCEEEEE-ECTTSCEEEEETTE----EEEE
T ss_pred -ccceeE--EEEEcCCCCEEEEEcCCCEEEEeCCCCeEEE-ccCCCCCCCCeeEEEE-ECCCCCEEEEECCC----ceEE
Confidence 000111 11345567788876 4679999998886443 22211 111122222 23577899866543 3388
Q ss_pred EEcCCCcee
Q 003800 207 INAMNGELL 215 (794)
Q Consensus 207 ld~~tG~~~ 215 (794)
+|+++++..
T Consensus 564 ~d~~~~~~~ 572 (781)
T 3v9f_A 564 PSARNFDYQ 572 (781)
T ss_dssp SCTTTCCCE
T ss_pred ECCCCCcEE
Confidence 999888643
No 216
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=93.02 E-value=9 Score=44.56 Aligned_cols=156 Identities=10% Similarity=0.124 Sum_probs=81.7
Q ss_pred cCCCEEEEEeCCCEEEEEECcCC---ccceEEEcCcccceeeeeee-eCCEEEEEEccCCeEEEEeCCCCcEeEEEeccC
Q 003800 51 TGRKRVVVSTEENVIASLDLRHG---EIFWRHVLGINDVVDGIDIA-LGKYVITLSSDGSTLRAWNLPDGQMVWESFLRG 126 (794)
Q Consensus 51 ~~~~~Vyv~t~~g~l~ALn~~tG---~ivWR~~l~~~~~i~~l~~~-~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~l~~ 126 (794)
++++.|++++. +.|..+|..+| ++. +.......+..+... .|+.+++++ + +.|+.||..+|+..--.....
T Consensus 118 pDg~~l~~~~~-~~i~~~d~~~~~~~~~~--~l~~~~~~~~~~~~SPDG~~la~~~-~-~~i~~~d~~~g~~~~~~~~~~ 192 (741)
T 2ecf_A 118 PDAQRLLFPLG-GELYLYDLKQEGKAAVR--QLTHGEGFATDAKLSPKGGFVSFIR-G-RNLWVIDLASGRQMQLTADGS 192 (741)
T ss_dssp TTSSEEEEEET-TEEEEEESSSCSTTSCC--BCCCSSSCEEEEEECTTSSEEEEEE-T-TEEEEEETTTTEEEECCCCCC
T ss_pred CCCCEEEEEeC-CcEEEEECCCCCcceEE--EcccCCcccccccCCCCCCEEEEEe-C-CcEEEEecCCCCEEEeccCCc
Confidence 34556777776 99999999998 442 111111222222222 345455544 3 489999999987653222111
Q ss_pred ccc---------------cCCccccccccccccCCeEEEE-ECC---------------------------------EEE
Q 003800 127 SKH---------------SKPLLLVPTNLKVDKDSLILVS-SKG---------------------------------CLH 157 (794)
Q Consensus 127 ~~~---------------s~~~~~~~~~~~~~~~~~V~V~-~~g---------------------------------~l~ 157 (794)
... ...+.+ ..+ ++.+++. .++ .|+
T Consensus 193 ~~~~~g~~~~v~~~~~~~~~~~~~-----SpD-g~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~ 266 (741)
T 2ecf_A 193 TTIGNGIAEFVADEEMDRHTGYWW-----APD-DSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLG 266 (741)
T ss_dssp SSEEESCCCHHHHHHSCCCCSEEE-----CTT-SSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEE
T ss_pred cceeccccceeeeeccccccceEE-----CCC-CCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEE
Confidence 100 011111 122 2334443 233 777
Q ss_pred EEECCC-CcEEEEEeccCcceeeeeEEEEecCCEEEEEEec-CCceeEEEEEEcCCCceeeee
Q 003800 158 AVSSID-GEILWTRDFAAESVEVQQVIQLDESDQIYVVGYA-GSSQFHAYQINAMNGELLNHE 218 (794)
Q Consensus 158 ald~~t-G~~~W~~~~~~~~~~~~~~v~s~~~~~vyv~~~~-g~~~~~v~ald~~tG~~~w~~ 218 (794)
.+|..+ |+................+.. .++..+++.+.. +.....+..+|+.+|+.....
T Consensus 267 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~ 328 (741)
T 2ecf_A 267 VISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLA 328 (741)
T ss_dssp EECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEE
T ss_pred EEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEE
Confidence 788887 776554321111111223333 456666665543 334568999999999876444
No 217
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=92.96 E-value=0.7 Score=49.94 Aligned_cols=154 Identities=8% Similarity=-0.007 Sum_probs=82.8
Q ss_pred CCEEEEEeCCCEEEEEECcCCccceEEE------cCc-ccceeeeeeeeCC-EEEEEEccCCeEEEEeCCCCcE----eE
Q 003800 53 RKRVVVSTEENVIASLDLRHGEIFWRHV------LGI-NDVVDGIDIALGK-YVITLSSDGSTLRAWNLPDGQM----VW 120 (794)
Q Consensus 53 ~~~Vyv~t~~g~l~ALn~~tG~ivWR~~------l~~-~~~i~~l~~~~g~-~~V~Vs~~g~~v~A~d~~tG~l----lW 120 (794)
+..++.+ .+|.|.-.|.+++...++.. +.. ...+..+.....+ ..++.++.++.|+.||..+|+. ..
T Consensus 189 ~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 267 (447)
T 3dw8_B 189 YETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSK 267 (447)
T ss_dssp SSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCE
T ss_pred CCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceee
Confidence 4445555 89999999999776666642 211 1223333222222 4555566667999999999987 55
Q ss_pred EEeccCcccc--------CCccccccccccccCC-eEEEEECCEEEEEECCC-CcEEEEEeccCccee------------
Q 003800 121 ESFLRGSKHS--------KPLLLVPTNLKVDKDS-LILVSSKGCLHAVSSID-GEILWTRDFAAESVE------------ 178 (794)
Q Consensus 121 e~~l~~~~~s--------~~~~~~~~~~~~~~~~-~V~V~~~g~l~ald~~t-G~~~W~~~~~~~~~~------------ 178 (794)
.......... .....+ ....++ .++..+++.+...|..+ |+++-++........
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~v~~~----~~s~~g~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~ 343 (447)
T 3dw8_B 268 LFEEPEDPSNRSFFSEIISSISDV----KFSHSGRYMMTRDYLSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIF 343 (447)
T ss_dssp EECCC-----CCHHHHHTTCEEEE----EECTTSSEEEEEESSEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGG
T ss_pred EeccCCCccccccccccCceEEEE----EECCCCCEEEEeeCCeEEEEeCCCCccccceeeccccccccccccccccccc
Confidence 5554432000 000111 111133 44444568899999886 776655544321100
Q ss_pred -eeeEEEEecCCEEEEEEecCCceeEEEEEEcCCCcee
Q 003800 179 -VQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELL 215 (794)
Q Consensus 179 -~~~~v~s~~~~~vyv~~~~g~~~~~v~ald~~tG~~~ 215 (794)
...+..+..+..++..+.+| .+..+|..+|+.+
T Consensus 344 ~~~~~~~s~~~~~l~s~s~dg----~v~iwd~~~~~~~ 377 (447)
T 3dw8_B 344 DKFECCWNGSDSVVMTGSYNN----FFRMFDRNTKRDI 377 (447)
T ss_dssp CCCCEEECTTSSEEEEECSTT----EEEEEETTTCCEE
T ss_pred cceEEEECCCCCEEEEeccCC----EEEEEEcCCCcce
Confidence 01122222334444333344 7888999999876
No 218
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=92.91 E-value=6 Score=43.67 Aligned_cols=147 Identities=9% Similarity=0.102 Sum_probs=75.7
Q ss_pred CCEEEEEeCCCEEEEEECcCCccceEEEcCcccceeeeeeeeCCEEEEEEccC-----CeEEEEeCCCCcEeEEEeccCc
Q 003800 53 RKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDG-----STLRAWNLPDGQMVWESFLRGS 127 (794)
Q Consensus 53 ~~~Vyv~t~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~~g-----~~v~A~d~~tG~llWe~~l~~~ 127 (794)
+++||++...+.|..+|+++|++.- .........++.+...++ ++++..+ ..+..++...+. .+...+..
T Consensus 152 ~g~Lyv~D~~~~I~~id~~~g~v~~--~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~~-~~~~~~~~- 226 (433)
T 4hw6_A 152 YDDLYWVGQRDAFRHVDFVNQYVDI--KTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASGF-TERLSLCN- 226 (433)
T ss_dssp TCEEEEECBTSCEEEEETTTTEEEE--ECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGTT-CCEEEEEE-
T ss_pred CCEEEEEeCCCCEEEEECCCCEEEE--eecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCCe-eccccccc-
Confidence 4789999877899999999887642 222211122342223334 6655432 235556554332 22222211
Q ss_pred cccCCcccccccccccc-CCeEEEEE--CCEEEEEECCCCcEEEEEec-cCcceeeeeEEEEecCCEEEEEEecCCceeE
Q 003800 128 KHSKPLLLVPTNLKVDK-DSLILVSS--KGCLHAVSSIDGEILWTRDF-AAESVEVQQVIQLDESDQIYVVGYAGSSQFH 203 (794)
Q Consensus 128 ~~s~~~~~~~~~~~~~~-~~~V~V~~--~g~l~ald~~tG~~~W~~~~-~~~~~~~~~~v~s~~~~~vyv~~~~g~~~~~ 203 (794)
...+ ...+++. ++.+||.. +++|+++|..+|...+.... ..... +..+.....++.+|+.....+ +
T Consensus 227 -~~~P-----~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~-~~~ia~dpdG~~LYvad~~~~---~ 296 (433)
T 4hw6_A 227 -ARGA-----KTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGS-NFHIVWHPTGDWAYIIYNGKH---C 296 (433)
T ss_dssp -CSSB-----CCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSS-CEEEEECTTSSEEEEEETTTT---E
T ss_pred -cCCC-----CEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCC-cccEEEeCCCCEEEEEeCCCC---E
Confidence 1000 0113343 56788763 78999999999987444322 11111 112322234456887654333 5
Q ss_pred EEEEE--cCCCce
Q 003800 204 AYQIN--AMNGEL 214 (794)
Q Consensus 204 v~ald--~~tG~~ 214 (794)
+..+| ..+|..
T Consensus 297 I~~~~~d~~~~~~ 309 (433)
T 4hw6_A 297 IYRVDYNRETGKL 309 (433)
T ss_dssp EEEEEBCTTTCCB
T ss_pred EEEEeCCCCCccc
Confidence 66655 446654
No 219
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=92.88 E-value=6.3 Score=43.41 Aligned_cols=150 Identities=9% Similarity=-0.023 Sum_probs=76.1
Q ss_pred CCEEEEEeCCCEEEEEECcCCccceEEEcCcccceeeeeeeeCCEEEEEEcc-C----CeEEEEeCCCCcEeEEEeccCc
Q 003800 53 RKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSD-G----STLRAWNLPDGQMVWESFLRGS 127 (794)
Q Consensus 53 ~~~Vyv~t~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~~-g----~~v~A~d~~tG~llWe~~l~~~ 127 (794)
++.||++...+.|..+|++++.+. ..........++.....++.++++.. + ..+..++. +|...+...+...
T Consensus 149 ~g~Lyv~d~~~~I~~id~~~~~v~--~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g~~~~~~~l~~~ 225 (430)
T 3tc9_A 149 HNHLYLVGEQHPTRLIDFEKEYVS--TVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ESGFKVITELTKG 225 (430)
T ss_dssp EEEEEEEEBTEEEEEEETTTTEEE--EEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GGTSCSEEEEEEC
T ss_pred CCeEEEEeCCCcEEEEECCCCEEE--EEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CCceeeeeeeccC
Confidence 577999988888999999887642 22222211223322234455666543 1 13455554 5554433332211
Q ss_pred cccCCcccccccccccc-CCeEEEEE--CCEEEEEECCCCcEEEEEeccCcceeeeeEEEEecCCEEEEEEecCCceeEE
Q 003800 128 KHSKPLLLVPTNLKVDK-DSLILVSS--KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHA 204 (794)
Q Consensus 128 ~~s~~~~~~~~~~~~~~-~~~V~V~~--~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~s~~~~~vyv~~~~g~~~~~v 204 (794)
. .+ .- .+++. ++.+++.. +++|++++..++...-....+.... |..+.....++.+|+..... ..+..
T Consensus 226 ~--~p-~g----iavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~-P~gia~~pdG~~lyv~d~~~-~~I~~ 296 (430)
T 3tc9_A 226 Q--NC-NG----AETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGW-EFHIQFHPSGNYAYIVVVNQ-HYILR 296 (430)
T ss_dssp S--SC-CC----EEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSC-CEEEEECTTSSEEEEEETTT-TEEEE
T ss_pred C--Cc-eE----EEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCc-ceeEEEcCCCCEEEEEECCC-CEEEE
Confidence 1 11 11 12333 56778763 7899999998887532222322111 33443223444588765433 33444
Q ss_pred EEEEcCCCce
Q 003800 205 YQINAMNGEL 214 (794)
Q Consensus 205 ~ald~~tG~~ 214 (794)
+.+|..+|+.
T Consensus 297 ~~~d~~~~~~ 306 (430)
T 3tc9_A 297 SDYDWKTKRL 306 (430)
T ss_dssp EEEETTTTEE
T ss_pred EeCCcccccc
Confidence 4455445544
No 220
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=92.79 E-value=4.4 Score=49.28 Aligned_cols=155 Identities=12% Similarity=0.112 Sum_probs=88.0
Q ss_pred CCEEEEEeCCCEEEEEECcCCccceEEEcCcccceeeeeeeeCCEEEEEEccCCeEEEEeCCCCcEeEEEecc-------
Q 003800 53 RKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLR------- 125 (794)
Q Consensus 53 ~~~Vyv~t~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~l~------- 125 (794)
+..++.++.++.|.-.|.++|+.+-..... ..+..+...-.+..+++++.++.|+.||..+|++. .+...
T Consensus 69 g~~L~S~s~D~~v~lWd~~~~~~~~~~~~~--~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~-~~~i~~~~~~~~ 145 (902)
T 2oaj_A 69 GIYLVVINAKDTVYVLSLYSQKVLTTVFVP--GKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLS-SFKLDNLQKSSF 145 (902)
T ss_dssp TTEEEEEETTCEEEEEETTTCSEEEEEECS--SCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEE-EEEECCHHHHHT
T ss_pred CCEEEEEECcCeEEEEECCCCcEEEEEcCC--CCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccc-cceecccccccc
Confidence 446999999999999999999988776533 23444433334556666666789999999999874 22110
Q ss_pred C-ccccCCccccccccccccCCeEEEE-ECCEEEEEECCCCcEEEEEeccCc----------------ceeeeeEEEEec
Q 003800 126 G-SKHSKPLLLVPTNLKVDKDSLILVS-SKGCLHAVSSIDGEILWTRDFAAE----------------SVEVQQVIQLDE 187 (794)
Q Consensus 126 ~-~~~s~~~~~~~~~~~~~~~~~V~V~-~~g~l~ald~~tG~~~W~~~~~~~----------------~~~~~~~v~s~~ 187 (794)
. .........+. ...+..+.+++. .+|.+ ..|..+|+..-.+....+ ......+..+ .
T Consensus 146 ~~~~h~~~V~sl~--~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fs-p 221 (902)
T 2oaj_A 146 FPAARLSPIVSIQ--WNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYH-P 221 (902)
T ss_dssp CSSSCCCCCCEEE--EETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEEC-T
T ss_pred ccccCCCCeEEEE--EccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEc-C
Confidence 0 00000111110 011111234444 38888 889999887766643200 0012223222 2
Q ss_pred CCEEEEEEecCCceeEEEEEEcCCCceeee
Q 003800 188 SDQIYVVGYAGSSQFHAYQINAMNGELLNH 217 (794)
Q Consensus 188 ~~~vyv~~~~g~~~~~v~ald~~tG~~~w~ 217 (794)
++..++.+...+ .+...|..+|+.+..
T Consensus 222 dg~~lasgs~Dg---~i~lWd~~~g~~~~~ 248 (902)
T 2oaj_A 222 NSLHIITIHEDN---SLVFWDANSGHMIMA 248 (902)
T ss_dssp TSSEEEEEETTC---CEEEEETTTCCEEEE
T ss_pred CCCEEEEEECCC---eEEEEECCCCcEEEE
Confidence 344444333322 688899999998754
No 221
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=92.56 E-value=10 Score=38.74 Aligned_cols=147 Identities=7% Similarity=0.047 Sum_probs=81.3
Q ss_pred CCEEEEEEccCCeEEEEeCCCCcEeEEEeccCccccCCccccccccccccCCeEEEEECCEEEEEECCCCcEEEEEeccC
Q 003800 95 GKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSSKGCLHAVSSIDGEILWTRDFAA 174 (794)
Q Consensus 95 g~~~V~Vs~~g~~v~A~d~~tG~llWe~~l~~~~~s~~~~~~~~~~~~~~~~~V~V~~~g~l~ald~~tG~~~W~~~~~~ 174 (794)
++.++++...+++|+.||+.+|+.. ........ ..+ ..+.++.+++..++.|+.+|.++|+...-.....
T Consensus 24 ~~~l~~~d~~~~~i~~~d~~~~~~~-~~~~~~~~-----~~i----~~~~dG~l~v~~~~~l~~~d~~~g~~~~~~~~~~ 93 (297)
T 3g4e_A 24 SNSLLFVDIPAKKVCRWDSFTKQVQ-RVTMDAPV-----SSV----ALRQSGGYVATIGTKFCALNWKEQSAVVLATVDN 93 (297)
T ss_dssp TTEEEEEETTTTEEEEEETTTCCEE-EEECSSCE-----EEE----EEBTTSSEEEEETTEEEEEETTTTEEEEEEECCT
T ss_pred CCEEEEEECCCCEEEEEECCCCcEE-EEeCCCce-----EEE----EECCCCCEEEEECCeEEEEECCCCcEEEEEecCC
Confidence 3455555555679999999988763 12222211 111 2233556777778899999999998765444321
Q ss_pred --cceeeeeEEEEecCCEEEEEEecCC--------ceeEEEEEEcCCCceeeee-eeecccCccCceEEE-cCcEEEEEE
Q 003800 175 --ESVEVQQVIQLDESDQIYVVGYAGS--------SQFHAYQINAMNGELLNHE-TAAFSGGFVGDVALV-SSDTLVTLD 242 (794)
Q Consensus 175 --~~~~~~~~v~s~~~~~vyv~~~~g~--------~~~~v~ald~~tG~~~w~~-~v~~~~~~s~~~~~v-g~~~lv~~d 242 (794)
+...+..+. ...++.+|+...... ....++.+|+. |+..-.. .+..|. .+.+- .++.+++.|
T Consensus 94 ~~~~~~~~di~-~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~~~~~~~~pn----gi~~spdg~~lyv~~ 167 (297)
T 3g4e_A 94 DKKNNRFNDGK-VDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVKKYFDQVDISN----GLDWSLDHKIFYYID 167 (297)
T ss_dssp TCSSEEEEEEE-ECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEEEEEEESBEE----EEEECTTSCEEEEEE
T ss_pred CCCCCCCCCEE-ECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEEEEeecccccc----ceEEcCCCCEEEEec
Confidence 111122332 234677887654321 23478889874 5443211 111221 12222 234566777
Q ss_pred CCCCeEEEEEe--ecce
Q 003800 243 TTRSILVTVSF--KNRK 257 (794)
Q Consensus 243 ~~~g~L~v~~l--~sg~ 257 (794)
..++.+.+.++ .+|.
T Consensus 168 ~~~~~i~~~~~d~~~G~ 184 (297)
T 3g4e_A 168 SLSYSVDAFDYDLQTGQ 184 (297)
T ss_dssp GGGTEEEEEEECTTTCC
T ss_pred CCCCcEEEEeccCCCCc
Confidence 66778888887 4565
No 222
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=92.44 E-value=3.4 Score=49.17 Aligned_cols=197 Identities=10% Similarity=0.121 Sum_probs=103.7
Q ss_pred CCEEEEEeCCCEEEEEECcCCccceEEEcC--cccceeeeeeeeCCEEEEEEccCCeEEEEeCCCCcEeEEEecc--Ccc
Q 003800 53 RKRVVVSTEENVIASLDLRHGEIFWRHVLG--INDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLR--GSK 128 (794)
Q Consensus 53 ~~~Vyv~t~~g~l~ALn~~tG~ivWR~~l~--~~~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~l~--~~~ 128 (794)
++.++++|..+-|..+|+++++. +.... ....+..+ ....++.+.+++.++.++.||..+++...-..-. ...
T Consensus 183 ~g~lwigt~~~Gl~~~~~~~~~~--~~~~~~~~~~~i~~i-~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~ 259 (795)
T 4a2l_A 183 GDQIYIGTSTDGLYTYSITQKTF--EKVIPILGTKQIQAI-LQQSPTRIWVATEGAGLFLINPKTKEIKNYLHSPSNPKS 259 (795)
T ss_dssp TTEEEEEESSSCEEEEETTTCCE--EECC----CCCEEEE-EEEETTEEEEEEBSSCEEEEETTTTEEEEECCCTTCTTS
T ss_pred CCCEEEEECCCCEEEEeCCCCeE--EEecCCCCCCeeEEE-EEcCCCCEEEEECCCCeEEEeCCCCeEEEeecCCCCccc
Confidence 67899999875699999998864 32211 11123333 2334556666664445999999888654221110 011
Q ss_pred ccCCccccccccccccCCeEEEEECCEEEEEECCCCcEEEEEeccC--cce---eeeeEEEEecCCEEEEEEecCCceeE
Q 003800 129 HSKPLLLVPTNLKVDKDSLILVSSKGCLHAVSSIDGEILWTRDFAA--ESV---EVQQVIQLDESDQIYVVGYAGSSQFH 203 (794)
Q Consensus 129 ~s~~~~~~~~~~~~~~~~~V~V~~~g~l~ald~~tG~~~W~~~~~~--~~~---~~~~~v~s~~~~~vyv~~~~g~~~~~ 203 (794)
++. ..+.. +..+.++.+.+.+.+.|..+|..+++...-...+. ..+ ....+. ....+.+++.+..+|
T Consensus 260 l~~-~~i~~--i~~d~~g~lWigt~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~-~D~~g~lWigt~~~G---- 331 (795)
T 4a2l_A 260 ISS-NYIRS--LAMDSQNRLWIGTFNDLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIF-MDSQGGMWLGTYFGG---- 331 (795)
T ss_dssp CSC-SBEEE--EEECTTSCEEEEESSCEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEE-ECTTSCEEEEESSSC----
T ss_pred cCC-CeEEE--EEEcCCCCEEEEeCChhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEE-EeCCcCEEEEECCCC----
Confidence 101 11111 13444677888875579999999887554332211 111 122222 245788998766554
Q ss_pred EEEEEcCCCceeeeeeeecccCccCc---eEEEc-C-cEEEEEECCCCeEEEEEeecceeeeEEEe
Q 003800 204 AYQINAMNGELLNHETAAFSGGFVGD---VALVS-S-DTLVTLDTTRSILVTVSFKNRKIAFQETH 264 (794)
Q Consensus 204 v~ald~~tG~~~w~~~v~~~~~~s~~---~~~vg-~-~~lv~~d~~~g~L~v~~l~sg~~~~~~~~ 264 (794)
+..+|+.+++...-.....+..+... +++.. + ++.++. ..+-|...+..+++ ++.+.
T Consensus 332 l~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~lWiGt--~~~Gl~~~~~~~~~--~~~~~ 393 (795)
T 4a2l_A 332 LNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKNLWIGT--NDGGLNLYNPITQR--FTSYT 393 (795)
T ss_dssp EEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSCEEEEE--SSSCEEEECTTTCC--EEEEC
T ss_pred eEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCCEEEEE--CCCCeEEEcCCCCc--EEEEe
Confidence 78888887765432221112333332 22222 2 233322 34457777766665 44443
No 223
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=92.43 E-value=4.9 Score=46.60 Aligned_cols=104 Identities=8% Similarity=-0.033 Sum_probs=54.1
Q ss_pred CCEEEEEeCCCEEEEEECcCCccceEEEcCcc-----------------cceeeeeeeeCCEEEEEEccCCeEEEEeCCC
Q 003800 53 RKRVVVSTEENVIASLDLRHGEIFWRHVLGIN-----------------DVVDGIDIALGKYVITLSSDGSTLRAWNLPD 115 (794)
Q Consensus 53 ~~~Vyv~t~~g~l~ALn~~tG~ivWR~~l~~~-----------------~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~t 115 (794)
++.++..+.+| | .+|.+||+.+=+..+... ..+..+....+ +.++++.+ +.++.||..+
T Consensus 35 g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~~~-~~i~~~d~~~ 110 (706)
T 2z3z_A 35 GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLFTQ-GGLVGFDMLA 110 (706)
T ss_dssp TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEEET-TEEEEEETTT
T ss_pred CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEEEC-CEEEEEECCC
Confidence 45666677777 6 999999975101111111 11333322234 44444544 6999999999
Q ss_pred CcEeEEEeccCccccCCccccccccccccCCeEEEEECCEEEEEECCC-----CcEEE
Q 003800 116 GQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSSKGCLHAVSSID-----GEILW 168 (794)
Q Consensus 116 G~llWe~~l~~~~~s~~~~~~~~~~~~~~~~~V~V~~~g~l~ald~~t-----G~~~W 168 (794)
|++.--...... . ..+.+.+ + ++.+++..++.|+..|..+ |+.+-
T Consensus 111 ~~~~~l~~~~~~-~-~~~~~Sp-----d-G~~la~~~~~~i~v~~~~~~~~~~g~~~~ 160 (706)
T 2z3z_A 111 RKVTYLFDTNEE-T-ASLDFSP-----V-GDRVAYVRNHNLYIARGGKLGEGMSRAIA 160 (706)
T ss_dssp TEEEEEECCTTC-C-TTCEECT-----T-SSEEEEEETTEEEEEECBCTTSCCCCCEE
T ss_pred CceEEccCCccc-c-cCCcCCC-----C-CCEEEEEECCeEEEEecCcccccCCCcEE
Confidence 987543332222 1 1222222 2 3445555789999999998 87653
No 224
>2zuy_A YESX protein; beta-propeller, lyase; 1.65A {Bacillus subtilis}
Probab=92.23 E-value=4 Score=46.71 Aligned_cols=148 Identities=18% Similarity=0.185 Sum_probs=77.4
Q ss_pred EEEEEECcCCccceEEEcCcc-cce-----------e----eeeeeeCC--EEEEEEcc--CCeEEEEeCCCCc--EeEE
Q 003800 64 VIASLDLRHGEIFWRHVLGIN-DVV-----------D----GIDIALGK--YVITLSSD--GSTLRAWNLPDGQ--MVWE 121 (794)
Q Consensus 64 ~l~ALn~~tG~ivWR~~l~~~-~~i-----------~----~l~~~~g~--~~V~Vs~~--g~~v~A~d~~tG~--llWe 121 (794)
.|..+|-.||+.+|+..+..+ +.+ + +.....|+ .+|+.-+. -..|.|||..+|+ .+|+
T Consensus 234 yL~vfdG~TG~~l~t~~~~p~rg~~~~WGD~yGnR~drf~~~vayLDG~~Ps~v~~rG~Ytr~~v~A~d~~~g~L~~~W~ 313 (620)
T 2zuy_A 234 YLTVFKGETGEALTTVEYEPPRGKLEDWGDGYGNRMDRFLAGTAYLDGERPSLVMARGYYTRTVLVAYDFRNGRLKKRWV 313 (620)
T ss_dssp EEEEEETTTCCEEEEEECSSCCCSGGGGTSSSSTTTTCEEEEEECTTCC-CEEEEEECSSSSCEEEEEEEETTEEEEEEE
T ss_pred EEEEEcCCCcceeeecccCCCcCccccccccccccccccceeEEecCCCCceEEEecCcccceeEEEEEccCCceeeeeE
Confidence 479999999999999988432 111 1 11001122 24443332 2469999999994 6999
Q ss_pred EeccCcc---c-c--CCccccccccccccCC--eEEEEECCEEEEEECCCCcEEEEEeccCccee-eeeEEEEecCCEEE
Q 003800 122 SFLRGSK---H-S--KPLLLVPTNLKVDKDS--LILVSSKGCLHAVSSIDGEILWTRDFAAESVE-VQQVIQLDESDQIY 192 (794)
Q Consensus 122 ~~l~~~~---~-s--~~~~~~~~~~~~~~~~--~V~V~~~g~l~ald~~tG~~~W~~~~~~~~~~-~~~~v~s~~~~~vy 192 (794)
+....+. . . .-.+.++ .+++++ .|++.+ .++| .+|+.+|+....-.... ...+-+...+-.||
T Consensus 314 ~ds~~~~~~~~~gqg~H~~sva---DVDGDG~dEIv~Gs----~~iD-~dG~~L~st~~gHGDa~hv~d~dP~rpGlev~ 385 (620)
T 2zuy_A 314 FDSNQPGHEAYAGQGNHSLSVA---DVDGDGKDEIIYGA----MAVD-HDGTGLYSTGLGHGDAMHVGDLDPSRKGLEVF 385 (620)
T ss_dssp EETTSTTCGGGTTCCCSSCEEE---CCSSSSSCEEEETT----EEEC-TTSSEEEECSCCCCSCEEEECSCTTSSSCEEE
T ss_pred ecCCCCcccccccccCcCceEE---ecCCCCceeEEEee----eEEC-CCCCEEeecCCCCCceeEEEecCCCCCCCEEE
Confidence 9875431 1 0 0111222 334333 344422 2556 79999999876433210 00000000122344
Q ss_pred EEEecCCceeEEEEEEcCCCceeeeee
Q 003800 193 VVGYAGSSQFHAYQINAMNGELLNHET 219 (794)
Q Consensus 193 v~~~~g~~~~~v~ald~~tG~~~w~~~ 219 (794)
.+.-.+....-....|++||+++|+..
T Consensus 386 ~~~E~~~~~~G~~~~DA~tG~vlw~~~ 412 (620)
T 2zuy_A 386 QVHEDATKPYGLSLRDAGTGEILWGVH 412 (620)
T ss_dssp EECCCTTSSCSEEEEETTTCCEEEEEC
T ss_pred EEecCCCCCCceEEEECCCCcEEEEec
Confidence 332221111124557999999999984
No 225
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=92.23 E-value=12 Score=38.60 Aligned_cols=193 Identities=7% Similarity=-0.004 Sum_probs=105.8
Q ss_pred CCEEEEEeCC----------CEEEEEECcCCccceEEEcCccccee-eeeeeeCCEEEEEEccC-----CeEEEEeCCCC
Q 003800 53 RKRVVVSTEE----------NVIASLDLRHGEIFWRHVLGINDVVD-GIDIALGKYVITLSSDG-----STLRAWNLPDG 116 (794)
Q Consensus 53 ~~~Vyv~t~~----------g~l~ALn~~tG~ivWR~~l~~~~~i~-~l~~~~g~~~V~Vs~~g-----~~v~A~d~~tG 116 (794)
++.||+.... +.+..+|+.++ .|++.-+.+..-. ......++.+++++|.+ ..+..||+.++
T Consensus 70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~--~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~ 147 (308)
T 1zgk_A 70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTN--QWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERD 147 (308)
T ss_dssp TTEEEEECCEEEETTEEEECCCEEEEETTTT--EEEECCCCSSCCBTCEEEEETTEEEEECCEETTEECCCEEEEETTTT
T ss_pred CCEEEEECCCcCCCCCCeecceEEEECCCCC--eEeECCCCCcCccccEEEEECCEEEEEcCCCCCcccccEEEECCCCC
Confidence 6788887553 56899999987 4987643321111 11123566666666631 46889999876
Q ss_pred cEeEEEeccCccccCCccccccccccccCCeEEEEE-------CCEEEEEECCCCcEEEEEeccCcce-eeeeEEEEecC
Q 003800 117 QMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSS-------KGCLHAVSSIDGEILWTRDFAAESV-EVQQVIQLDES 188 (794)
Q Consensus 117 ~llWe~~l~~~~~s~~~~~~~~~~~~~~~~~V~V~~-------~g~l~ald~~tG~~~W~~~~~~~~~-~~~~~v~s~~~ 188 (794)
.|+.....+.. ......... ++.+++.. -..+..+|..++ .|+.-.+.+.- ....+ ...+
T Consensus 148 --~W~~~~~~p~~-----r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~--~~~~ 215 (308)
T 1zgk_A 148 --EWHLVAPMLTR-----RIGVGVAVL-NRLLYAVGGFDGTNRLNSAECYYPERN--EWRMITAMNTIRSGAGV--CVLH 215 (308)
T ss_dssp --EEEECCCCSSC-----CBSCEEEEE-TTEEEEECCBCSSCBCCCEEEEETTTT--EEEECCCCSSCCBSCEE--EEET
T ss_pred --eEeECCCCCcc-----ccceEEEEE-CCEEEEEeCCCCCCcCceEEEEeCCCC--eEeeCCCCCCccccceE--EEEC
Confidence 57764322211 111000122 56677753 246888888776 58764432221 01112 2358
Q ss_pred CEEEEEEecCCc--eeEEEEEEcCCCceeeeeeeecccCccC-ceEEEcCcEEEEEEC----CCCeEEEEEeecceeeeE
Q 003800 189 DQIYVVGYAGSS--QFHAYQINAMNGELLNHETAAFSGGFVG-DVALVSSDTLVTLDT----TRSILVTVSFKNRKIAFQ 261 (794)
Q Consensus 189 ~~vyv~~~~g~~--~~~v~ald~~tG~~~w~~~v~~~~~~s~-~~~~vg~~~lv~~d~----~~g~L~v~~l~sg~~~~~ 261 (794)
+.+|+++...+. .-.+..+|+.++ .|+..-..|..... .+.+.++.+++..-. ....+.+.|+++++ .+
T Consensus 216 ~~iyv~GG~~~~~~~~~v~~yd~~~~--~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~--W~ 291 (308)
T 1zgk_A 216 NCIYAAGGYDGQDQLNSVERYDVETE--TWTFVAPMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDT--WS 291 (308)
T ss_dssp TEEEEECCBCSSSBCCCEEEEETTTT--EEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTE--EE
T ss_pred CEEEEEeCCCCCCccceEEEEeCCCC--cEEECCCCCCCccceEEEEECCEEEEEcCcCCCcccceEEEEcCCCCE--Ee
Confidence 899988643211 236889999876 57764444443333 333345555444311 12457778877776 44
Q ss_pred EE
Q 003800 262 ET 263 (794)
Q Consensus 262 ~~ 263 (794)
.+
T Consensus 292 ~~ 293 (308)
T 1zgk_A 292 EV 293 (308)
T ss_dssp EE
T ss_pred ec
Confidence 43
No 226
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=92.11 E-value=12 Score=38.50 Aligned_cols=150 Identities=12% Similarity=0.079 Sum_probs=77.6
Q ss_pred CCEEEEEeCC---CEEEEEECcCCccceEEEcCcccceeeeeeeeCCEEEEEEc-cCCeEEEEeCCCCc-EeEEEeccCc
Q 003800 53 RKRVVVSTEE---NVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSS-DGSTLRAWNLPDGQ-MVWESFLRGS 127 (794)
Q Consensus 53 ~~~Vyv~t~~---g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~-~g~~v~A~d~~tG~-llWe~~l~~~ 127 (794)
++++|++... ..|..+|+.+|++.....+.......+... ..++.++++. ..+.|+.+|..+|+ .+|.......
T Consensus 82 dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~-~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~ 160 (306)
T 2p4o_A 82 NGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITP-LSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLA 160 (306)
T ss_dssp TSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEE-SSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGS
T ss_pred CCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccc-cCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccc
Confidence 5678998743 368999999998754444432211223311 2233455554 35689999998774 3443221100
Q ss_pred --cccCCccccccccccccCCeEEEEE--CCEEEEEECCC-CcE----EEEEeccCcceeeeeEEEEecCCEEEEEEecC
Q 003800 128 --KHSKPLLLVPTNLKVDKDSLILVSS--KGCLHAVSSID-GEI----LWTRDFAAESVEVQQVIQLDESDQIYVVGYAG 198 (794)
Q Consensus 128 --~~s~~~~~~~~~~~~~~~~~V~V~~--~g~l~ald~~t-G~~----~W~~~~~~~~~~~~~~v~s~~~~~vyv~~~~g 198 (794)
...... ..+..+..+ ++.+||.. .++|++++... |+. .|. .... |..+. ...++.+|+....+
T Consensus 161 ~~~~~~~~-~~pngis~d-g~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~-~~~~----P~gi~-vd~dG~l~va~~~~ 232 (306)
T 2p4o_A 161 RSNSESVF-PAANGLKRF-GNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV-EQTN----IDDFA-FDVEGNLYGATHIY 232 (306)
T ss_dssp CSSTTCCS-CSEEEEEEE-TTEEEEEETTTTEEEEEEBCTTSCBCCCEEEE-ESCC----CSSEE-EBTTCCEEEECBTT
T ss_pred cccccCCC-CcCCCcCcC-CCEEEEEeCCCCEEEEEEeCCCCCCCccEEEe-ccCC----CCCeE-ECCCCCEEEEeCCC
Confidence 000000 011001122 35677763 77899998764 532 221 1111 22232 23467888765544
Q ss_pred CceeEEEEEEcCCCcee
Q 003800 199 SSQFHAYQINAMNGELL 215 (794)
Q Consensus 199 ~~~~~v~ald~~tG~~~ 215 (794)
+ +|..+|+. |+..
T Consensus 233 ~---~V~~~~~~-G~~~ 245 (306)
T 2p4o_A 233 N---SVVRIAPD-RSTT 245 (306)
T ss_dssp C---CEEEECTT-CCEE
T ss_pred C---eEEEECCC-CCEE
Confidence 3 68888985 8763
No 227
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=91.93 E-value=1.3 Score=48.49 Aligned_cols=154 Identities=9% Similarity=0.009 Sum_probs=80.0
Q ss_pred CCEEEEEeCCCEEEEEECcCCccceEEEcCccc-ceeeeeeeeCCEEEEEEccCCeEEEEeCCCCcEeEEEeccCccccC
Q 003800 53 RKRVVVSTEENVIASLDLRHGEIFWRHVLGIND-VVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSK 131 (794)
Q Consensus 53 ~~~Vyv~t~~g~l~ALn~~tG~ivWR~~l~~~~-~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~l~~~~~s~ 131 (794)
++.++.++.+|.|...|.+++............ .+..+.....+..++.++.++.|+.||. +|+.++......... .
T Consensus 177 ~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~-~~~~~~~~~~h~~~v-~ 254 (435)
T 4e54_B 177 TNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNM-DGKELWNLRMHKKKV-T 254 (435)
T ss_dssp TTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEES-SSCBCCCSBCCSSCE-E
T ss_pred CCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeecc-CcceeEEEecccceE-E
Confidence 567889999999999999877654333222211 1222322334455665666789999997 467666555433222 1
Q ss_pred CccccccccccccCCeEEE-EE-CCEEEEEECCCCcEEEEEeccCc-ceeeeeEEEEecCCEEEEEEecCCceeEEEEEE
Q 003800 132 PLLLVPTNLKVDKDSLILV-SS-KGCLHAVSSIDGEILWTRDFAAE-SVEVQQVIQLDESDQIYVVGYAGSSQFHAYQIN 208 (794)
Q Consensus 132 ~~~~~~~~~~~~~~~~V~V-~~-~g~l~ald~~tG~~~W~~~~~~~-~~~~~~~v~s~~~~~vyv~~~~g~~~~~v~ald 208 (794)
.+.+. .. +..+++ .+ |+.+...|..+++..-......+ ......+..+..+..++..+.+| .+..+|
T Consensus 255 ~v~~~-----p~-~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~----~i~iwd 324 (435)
T 4e54_B 255 HVALN-----PC-CDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKS----EIRVYS 324 (435)
T ss_dssp EEEEC-----TT-CSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSS----CEEEEE
T ss_pred eeeec-----CC-CceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCC----EEEEEE
Confidence 11111 12 233443 33 77777777766542211100000 00011111112344555444455 678889
Q ss_pred cCCCceeeee
Q 003800 209 AMNGELLNHE 218 (794)
Q Consensus 209 ~~tG~~~w~~ 218 (794)
..+|+.....
T Consensus 325 ~~~~~~~~~~ 334 (435)
T 4e54_B 325 ASQWDCPLGL 334 (435)
T ss_dssp SSSSSSEEEE
T ss_pred CCCCccceEE
Confidence 9998866544
No 228
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=91.79 E-value=14 Score=38.46 Aligned_cols=189 Identities=12% Similarity=0.059 Sum_probs=92.4
Q ss_pred CCCEEEEEeCCCEEEEEECcCCccceEEEcCcccceeeeeeeeCCEEEEEEccCCeEEEEeCCCCcEeEEEeccCccccC
Q 003800 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSK 131 (794)
Q Consensus 52 ~~~~Vyv~t~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~l~~~~~s~ 131 (794)
++..++.++.++.|.-.|.++|+.+-+..-. ...+..+.....+..++.++.++.++.||.. |............. .
T Consensus 87 ~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h-~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~-~~~~~~~~~~~~~~-~ 163 (343)
T 2xzm_R 87 ENCFAISSSWDKTLRLWDLRTGTTYKRFVGH-QSEVYSVAFSPDNRQILSAGAEREIKLWNIL-GECKFSSAEKENHS-D 163 (343)
T ss_dssp STTEEEEEETTSEEEEEETTSSCEEEEEECC-CSCEEEEEECSSTTEEEEEETTSCEEEEESS-SCEEEECCTTTSCS-S
T ss_pred CCCEEEEEcCCCcEEEEECCCCcEEEEEcCC-CCcEEEEEECCCCCEEEEEcCCCEEEEEecc-CCceeeeecccCCC-c
Confidence 4566888999999999999999877654432 2234444222333344445556799999987 44333322110000 0
Q ss_pred Ccccccccccccc---------CCeEEEEE-CCEEEEEECCCCcEEEEEeccCcceeeeeEEEEecCCEEEEEEecCCce
Q 003800 132 PLLLVPTNLKVDK---------DSLILVSS-KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQ 201 (794)
Q Consensus 132 ~~~~~~~~~~~~~---------~~~V~V~~-~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~s~~~~~vyv~~~~g~~~ 201 (794)
....+.. .... ...++..+ +|.+...| .+++........... ...+..+..+..+...+.+|
T Consensus 164 ~v~~~~~--~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~--v~~~~~s~~g~~l~sgs~dg--- 235 (343)
T 2xzm_R 164 WVSCVRY--SPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESN--VNHLSISPNGKYIATGGKDK--- 235 (343)
T ss_dssp CEEEEEE--CCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSC--EEEEEECTTSSEEEEEETTC---
T ss_pred eeeeeee--ccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCcccc--ceEEEECCCCCEEEEEcCCC---
Confidence 0000000 0000 12333333 88988888 556666655443322 12222122333344333344
Q ss_pred eEEEEEEcC-CCceeeeeeeecccCccCceEEE-cCcEEEEEECCCCeEEEEEeecce
Q 003800 202 FHAYQINAM-NGELLNHETAAFSGGFVGDVALV-SSDTLVTLDTTRSILVTVSFKNRK 257 (794)
Q Consensus 202 ~~v~ald~~-tG~~~w~~~v~~~~~~s~~~~~v-g~~~lv~~d~~~g~L~v~~l~sg~ 257 (794)
.+...|.. .+....... ....+. .+.+- .+.++++.. .+.+.+.++.+++
T Consensus 236 -~v~iwd~~~~~~~~~~~~--~~~~v~-~v~~sp~~~~la~~~--d~~v~iw~~~~~~ 287 (343)
T 2xzm_R 236 -KLLIWDILNLTYPQREFD--AGSTIN-QIAFNPKLQWVAVGT--DQGVKIFNLMTQS 287 (343)
T ss_dssp -EEEEEESSCCSSCSEEEE--CSSCEE-EEEECSSSCEEEEEE--SSCEEEEESSSCC
T ss_pred -eEEEEECCCCcccceeec--CCCcEE-EEEECCCCCEEEEEC--CCCEEEEEeCCCC
Confidence 77788874 333332221 111111 11111 223444443 3567888887765
No 229
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=91.64 E-value=5.8 Score=46.39 Aligned_cols=156 Identities=14% Similarity=0.122 Sum_probs=82.1
Q ss_pred cCCCEEEEEeC-----CCEEEEEECcC------CccceEEEcCcccceeeeeeeeCCEEEEEEccC---CeEEEEeCCCC
Q 003800 51 TGRKRVVVSTE-----ENVIASLDLRH------GEIFWRHVLGINDVVDGIDIALGKYVITLSSDG---STLRAWNLPDG 116 (794)
Q Consensus 51 ~~~~~Vyv~t~-----~g~l~ALn~~t------G~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~~g---~~v~A~d~~tG 116 (794)
.+++.|++.+. .+.|+.+|..+ |+..|+.............-..|+.+++.+..+ ..|+.||..+|
T Consensus 242 pDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~ 321 (710)
T 2xdw_A 242 DDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDP 321 (710)
T ss_dssp TTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSC
T ss_pred CCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEEEEeccCCEEEEEECCCCCCCEEEEEeCCCC
Confidence 34555666554 57899999988 766677766544322222113466666666532 47999999988
Q ss_pred cE-eEEEeccCccccCCccccccccccccCCeEEEE--ECC--EEEEEECCCCcEEEEEeccCcceeeeeEEEEecCCEE
Q 003800 117 QM-VWESFLRGSKHSKPLLLVPTNLKVDKDSLILVS--SKG--CLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQI 191 (794)
Q Consensus 117 ~l-lWe~~l~~~~~s~~~~~~~~~~~~~~~~~V~V~--~~g--~l~ald~~tG~~~W~~~~~~~~~~~~~~v~s~~~~~v 191 (794)
.. .|+.-+..... ..+..+ ....++.+++. .++ +|+.+|..+|+..-+...+... ...+..+..+..+
T Consensus 322 ~~~~~~~l~~~~~~-~~~~~~----~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~--v~~~~~s~d~~~l 394 (710)
T 2xdw_A 322 EESKWKVLVPEHEK-DVLEWV----ACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGS--VVGYSGQKKDTEI 394 (710)
T ss_dssp CGGGCEEEECCCSS-CEEEEE----EEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSE--EEEEECCTTCSEE
T ss_pred CcccceeccCCCCC-CeEEEE----EEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCce--EEEEecCCCCCEE
Confidence 64 67765443210 001111 11113444443 355 5788888788766555444221 1112111123344
Q ss_pred EEEEecCCceeEEEEEEcCCCc
Q 003800 192 YVVGYAGSSQFHAYQINAMNGE 213 (794)
Q Consensus 192 yv~~~~g~~~~~v~ald~~tG~ 213 (794)
++.......-..++.+|+.+|+
T Consensus 395 ~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 395 FYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEEECSSCCCEEEEEETTSSS
T ss_pred EEEEeCCCCCCEEEEEECCCCc
Confidence 4432221122367778888877
No 230
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=91.64 E-value=13 Score=37.93 Aligned_cols=193 Identities=12% Similarity=0.067 Sum_probs=105.5
Q ss_pred CCEEEEEeC------CCEEEEEECcCCccceEEEcCccccee-eeeeeeCCEEEEEEccC-----CeEEEEeCCCCcEeE
Q 003800 53 RKRVVVSTE------ENVIASLDLRHGEIFWRHVLGINDVVD-GIDIALGKYVITLSSDG-----STLRAWNLPDGQMVW 120 (794)
Q Consensus 53 ~~~Vyv~t~------~g~l~ALn~~tG~ivWR~~l~~~~~i~-~l~~~~g~~~V~Vs~~g-----~~v~A~d~~tG~llW 120 (794)
+++||+... .+.+..+|+.+++ |+..-+.+..-. ......++.++++||.+ ..+..||+.+++ |
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~--W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~--W 136 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQ--WTSVANMRDRRSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNE--W 136 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTE--EEEECCCSSCCBSCEEEEETTEEEEEEEECSSCEEEEEEEEETTTTE--E
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCc--eeeCCCCCccccceEEEEECCEEEEEcCCCCCccCceEEEEeCCCCe--E
Confidence 778888764 2468999999874 998654332111 11123566677767632 358899988764 8
Q ss_pred EEeccCccccCCccccccccccccCCeEEEEE---------CCEEEEEECCCCcEEEEEeccCcce-eeeeEEEEecCCE
Q 003800 121 ESFLRGSKHSKPLLLVPTNLKVDKDSLILVSS---------KGCLHAVSSIDGEILWTRDFAAESV-EVQQVIQLDESDQ 190 (794)
Q Consensus 121 e~~l~~~~~s~~~~~~~~~~~~~~~~~V~V~~---------~g~l~ald~~tG~~~W~~~~~~~~~-~~~~~v~s~~~~~ 190 (794)
+.....+.. ..... ....++.+++.. -..+..+|..++ .|+.-.+.+.- ....+ ...++.
T Consensus 137 ~~~~~~p~~-----r~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~--~~~~~~ 206 (302)
T 2xn4_A 137 FHVAPMNTR-----RSSVG-VGVVGGLLYAVGGYDVASRQCLSTVECYNATTN--EWTYIAEMSTRRSGAGV--GVLNNL 206 (302)
T ss_dssp EEECCCSSC-----CBSCE-EEEETTEEEEECCEETTTTEECCCEEEEETTTT--EEEEECCCSSCCBSCEE--EEETTE
T ss_pred eecCCCCCc-----ccCce-EEEECCEEEEEeCCCCCCCccccEEEEEeCCCC--cEEECCCCccccccccE--EEECCE
Confidence 765322211 11100 111256677752 134888898876 58765433221 01112 235789
Q ss_pred EEEEEecCCc--eeEEEEEEcCCCceeeeeeeecccCccC-ceEEEcCcEEEEEECC----CCeEEEEEeecceeeeEEE
Q 003800 191 IYVVGYAGSS--QFHAYQINAMNGELLNHETAAFSGGFVG-DVALVSSDTLVTLDTT----RSILVTVSFKNRKIAFQET 263 (794)
Q Consensus 191 vyv~~~~g~~--~~~v~ald~~tG~~~w~~~v~~~~~~s~-~~~~vg~~~lv~~d~~----~g~L~v~~l~sg~~~~~~~ 263 (794)
+|+++...+. .-.+..+|+.++ .|+..-..|..... .+...++.+++..-.+ ...+.+.|+.+++ ...+
T Consensus 207 iyv~GG~~~~~~~~~~~~yd~~~~--~W~~~~~~~~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~--W~~~ 282 (302)
T 2xn4_A 207 LYAVGGHDGPLVRKSVEVYDPTTN--AWRQVADMNMCRRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTDK--WTVV 282 (302)
T ss_dssp EEEECCBSSSSBCCCEEEEETTTT--EEEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTE--EEEC
T ss_pred EEEECCCCCCcccceEEEEeCCCC--CEeeCCCCCCccccCeEEEECCEEEEECCcCCCcccccEEEEcCCCCe--EEEC
Confidence 9988643211 236889999876 47764344433333 2333354555443211 1347778877776 5543
No 231
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=91.46 E-value=20 Score=39.78 Aligned_cols=181 Identities=18% Similarity=0.192 Sum_probs=88.6
Q ss_pred CCCEEEEEeCCCEEEEEECcCCccceEEEcCcccceeeeeeeeCCEEEEEEccCCeEEEEeCCCCcEeEEEeccCccccC
Q 003800 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSK 131 (794)
Q Consensus 52 ~~~~Vyv~t~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~l~~~~~s~ 131 (794)
++..+++++.++.+.-.|. +|+.+-. .......+..+....++..++.++.++.++.||.....+. .........
T Consensus 273 d~~~l~~~~~d~~i~~w~~-~~~~~~~-~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~-~~~~~~~~v-- 347 (577)
T 2ymu_A 273 DGQTIASASDDKTVKLWNR-NGQLLQT-LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQ-TLTGHSSSV-- 347 (577)
T ss_dssp TSSEEEEEETTSCEEEEET-TSCEEEE-ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEE-EECCCSSCE--
T ss_pred CCCEEEEEeCCCEEEEEeC-CCcEEEE-EecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeeE-EEeCCCCCE--
Confidence 4566888889999888885 5554322 2222223433322233445544555679999998655443 333222211
Q ss_pred CccccccccccccCC-eEEEEE-CCEEEEEECCCCcEEEEEeccCcceeeeeEEEEecCCEEEEEEecCCceeEEEEEEc
Q 003800 132 PLLLVPTNLKVDKDS-LILVSS-KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINA 209 (794)
Q Consensus 132 ~~~~~~~~~~~~~~~-~V~V~~-~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~s~~~~~vyv~~~~g~~~~~v~ald~ 209 (794)
..+ ....++ .++... +|.+...| .+|+...+....... ...+.. ..++..++.+...+ .+..+|
T Consensus 348 --~~~----~~s~~g~~l~~~~~dg~v~~~~-~~~~~~~~~~~~~~~--v~~~~~-s~dg~~l~~~~~d~---~v~~~~- 413 (577)
T 2ymu_A 348 --WGV----AFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSS--VRGVAF-SPDGQTIASASDDK---TVKLWN- 413 (577)
T ss_dssp --EEE----EECTTSSEEEEEETTSEEEEEE-TTCCEEEEEECCSSC--EEEEEE-CTTSSCEEEEETTS---EEEEEC-
T ss_pred --EEE----EECCCCCEEEEEeCCCEEEEEc-CCCCEEEEecCCCCC--eEEEEE-CCCCCEEEEEeCCC---EEEEEe-
Confidence 111 111133 344443 78888888 567777666543322 222322 23333333333322 566667
Q ss_pred CCCceeeeeeeecccCccCceEEE-cCcEEEEEECCCCeEEEEEee
Q 003800 210 MNGELLNHETAAFSGGFVGDVALV-SSDTLVTLDTTRSILVTVSFK 254 (794)
Q Consensus 210 ~tG~~~w~~~v~~~~~~s~~~~~v-g~~~lv~~d~~~g~L~v~~l~ 254 (794)
.+|+.+..... ....+. .+.+- .+..++... .++.+.+-++.
T Consensus 414 ~~~~~~~~~~~-~~~~v~-~~~~s~d~~~l~~~~-~d~~v~~w~~~ 456 (577)
T 2ymu_A 414 RNGQLLQTLTG-HSSSVW-GVAFSPDDQTIASAS-DDKTVKLWNRN 456 (577)
T ss_dssp TTCCEEEEEEC-CSSCEE-EEEECTTSSEEEEEE-TTSEEEEEETT
T ss_pred CCCCEEEEecC-CCCCeE-EEEECCCCCEEEEEc-CCCEEEEEECC
Confidence 46776544321 111111 11221 334555554 35777777754
No 232
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=91.33 E-value=8.1 Score=39.78 Aligned_cols=147 Identities=12% Similarity=0.147 Sum_probs=75.3
Q ss_pred CEEEEEEccCCeEEEEeCCCCcEeEEEeccCccccCCccccccccccccCCeEEEEE--C----CEEEEEECCCCcEEEE
Q 003800 96 KYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSS--K----GCLHAVSSIDGEILWT 169 (794)
Q Consensus 96 ~~~V~Vs~~g~~v~A~d~~tG~llWe~~l~~~~~s~~~~~~~~~~~~~~~~~V~V~~--~----g~l~ald~~tG~~~W~ 169 (794)
+.+++++..++.|+.||+.+|+..-........ +..+ ..+.++.+++.. + +.|+.+|..+|...-.
T Consensus 56 g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~----~~~i----~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~ 127 (333)
T 2dg1_A 56 GQLFLLDVFEGNIFKINPETKEIKRPFVSHKAN----PAAI----KIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDI 127 (333)
T ss_dssp SCEEEEETTTCEEEEECTTTCCEEEEEECSSSS----EEEE----EECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEE
T ss_pred CCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCC----cceE----EECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEE
Confidence 334444555678999999999865332211111 1111 233356677764 3 5899999988875422
Q ss_pred EeccCcceeeeeEEEEecCCEEEEEEecC---CceeEEEEEEcCCCceeeeee-eecccCccCceEEE-cCcEEEEEECC
Q 003800 170 RDFAAESVEVQQVIQLDESDQIYVVGYAG---SSQFHAYQINAMNGELLNHET-AAFSGGFVGDVALV-SSDTLVTLDTT 244 (794)
Q Consensus 170 ~~~~~~~~~~~~~v~s~~~~~vyv~~~~g---~~~~~v~ald~~tG~~~w~~~-v~~~~~~s~~~~~v-g~~~lv~~d~~ 244 (794)
.........+..+. ...++.+|+.+..+ .....++.+|+.+|+...-.. ...+ ..+.+- .++.+++.+..
T Consensus 128 ~~~~~~~~~~~~i~-~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~----~~i~~~~dg~~l~v~~~~ 202 (333)
T 2dg1_A 128 IEDLSTAYCIDDMV-FDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVA----NGIALSTDEKVLWVTETT 202 (333)
T ss_dssp ECSSSSCCCEEEEE-ECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSE----EEEEECTTSSEEEEEEGG
T ss_pred EccCccCCcccceE-ECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCCCcc----cceEECCCCCEEEEEeCC
Confidence 22111111133332 23467788765431 012478999988776542211 1111 112221 22345455544
Q ss_pred CCeEEEEEeec
Q 003800 245 RSILVTVSFKN 255 (794)
Q Consensus 245 ~g~L~v~~l~s 255 (794)
.+.+++.++.+
T Consensus 203 ~~~i~~~d~~~ 213 (333)
T 2dg1_A 203 ANRLHRIALED 213 (333)
T ss_dssp GTEEEEEEECT
T ss_pred CCeEEEEEecC
Confidence 56777777753
No 233
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=91.17 E-value=10 Score=39.17 Aligned_cols=148 Identities=9% Similarity=0.012 Sum_probs=78.9
Q ss_pred CCE-EEEEeCCCEEEEEECcCCcc-ceEEEcCc-----------------ccceeeeeeeeCCEEEEEEccCCeEEEEeC
Q 003800 53 RKR-VVVSTEENVIASLDLRHGEI-FWRHVLGI-----------------NDVVDGIDIALGKYVITLSSDGSTLRAWNL 113 (794)
Q Consensus 53 ~~~-Vyv~t~~g~l~ALn~~tG~i-vWR~~l~~-----------------~~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~ 113 (794)
++. +|+.+..+.|..+|+++|+. .|...-.. .....++.....++.++|+..+..++.+|+
T Consensus 29 ~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~~~~i~~~d~ 108 (322)
T 2fp8_A 29 TNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCYYHLSVVGS 108 (322)
T ss_dssp TCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEETTTEEEEECT
T ss_pred CCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEECCCCEEEEeC
Confidence 344 99999999999999988754 34431110 001223422212455666644456999998
Q ss_pred CCCcEeEEEec-cCccccCCcccccccccccc-CCeEEEEE-------------------CCEEEEEECCCCcEEEEE-e
Q 003800 114 PDGQMVWESFL-RGSKHSKPLLLVPTNLKVDK-DSLILVSS-------------------KGCLHAVSSIDGEILWTR-D 171 (794)
Q Consensus 114 ~tG~llWe~~l-~~~~~s~~~~~~~~~~~~~~-~~~V~V~~-------------------~g~l~ald~~tG~~~W~~-~ 171 (794)
.+|+...-... .+... ..+.....+. ++.+++.. .|.|+++|..+|+..-.. .
T Consensus 109 ~~g~~~~~~~~~~~~~~-----~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~ 183 (322)
T 2fp8_A 109 EGGHATQLATSVDGVPF-----KWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKE 183 (322)
T ss_dssp TCEECEEEESEETTEEC-----SCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEEE
T ss_pred CCCEEEEecccCCCCcc-----cccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEeccC
Confidence 87764322211 11111 0111124454 56788753 268999999888754221 1
Q ss_pred ccCcceeeeeEEEEecCCEEEEEEecCCceeEEEEEEcCCC
Q 003800 172 FAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNG 212 (794)
Q Consensus 172 ~~~~~~~~~~~v~s~~~~~vyv~~~~g~~~~~v~ald~~tG 212 (794)
... +..+.....++.+|+.....+ ++..+|..++
T Consensus 184 ~~~----p~gia~~~dg~~lyv~d~~~~---~I~~~~~~~~ 217 (322)
T 2fp8_A 184 LHV----PGGAEVSADSSFVLVAEFLSH---QIVKYWLEGP 217 (322)
T ss_dssp ESC----CCEEEECTTSSEEEEEEGGGT---EEEEEESSST
T ss_pred Ccc----CcceEECCCCCEEEEEeCCCC---eEEEEECCCC
Confidence 111 222321223346887654433 7888888753
No 234
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=91.04 E-value=2.5 Score=43.64 Aligned_cols=131 Identities=14% Similarity=0.171 Sum_probs=70.8
Q ss_pred CCEEEEEECcCCccceEEEcCcccceeeeeeeeCCEEEEEEccC------CeEEEEeCCCCcEeEEEeccCccccCCccc
Q 003800 62 ENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDG------STLRAWNLPDGQMVWESFLRGSKHSKPLLL 135 (794)
Q Consensus 62 ~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~~g------~~v~A~d~~tG~llWe~~l~~~~~s~~~~~ 135 (794)
.+.|+.+|+++|++.--..+. ...++....++..++++... +.|+.||...+. +-......... . -
T Consensus 168 ~~~v~~~d~~~g~~~~~~~~~---~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~~-~---~ 239 (305)
T 3dr2_A 168 HHSVYRLPPDGSPLQRMADLD---HPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFASVP-D---G 239 (305)
T ss_dssp CEEEEEECSSSCCCEEEEEES---SEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEECCS-S---S
T ss_pred CCeEEEEcCCCCcEEEEecCC---CCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEECC-C---C
Confidence 368999999999764221111 12233223344455555332 689999987665 22211110000 0 0
Q ss_pred cccccccccCCeEEEEECCEEEEEECCCCcEEEEEeccCcceeeeeEEEEecCCEEEEEEecCCceeEEEEEEc
Q 003800 136 VPTNLKVDKDSLILVSSKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINA 209 (794)
Q Consensus 136 ~~~~~~~~~~~~V~V~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~s~~~~~vyv~~~~g~~~~~v~ald~ 209 (794)
.+..+..+.++.+++...+.|+.+|. +|+..-.+..+.. +..+......+.+|+.+ .+ .++++++
T Consensus 240 ~pdgi~~d~~G~lwv~~~~gv~~~~~-~g~~~~~~~~~~~---~~~~~f~~d~~~L~it~-~~----~l~~~~~ 304 (305)
T 3dr2_A 240 LPDGFCVDRGGWLWSSSGTGVCVFDS-DGQLLGHIPTPGT---ASNCTFDQAQQRLFITG-GP----CLWMLPL 304 (305)
T ss_dssp CCCSEEECTTSCEEECCSSEEEEECT-TSCEEEEEECSSC---CCEEEECTTSCEEEEEE-TT----EEEEEEC
T ss_pred CCCeEEECCCCCEEEecCCcEEEECC-CCCEEEEEECCCc---eeEEEEeCCCCEEEEEc-CC----eEEEEEC
Confidence 11112344467788876667999997 6888877776542 23343233445677644 33 4777764
No 235
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=91.02 E-value=15 Score=37.52 Aligned_cols=70 Identities=11% Similarity=0.143 Sum_probs=47.4
Q ss_pred CCCEEEEEe-CCCEEEEEECcCCccceEEEcCcccceeeeeeeeCCEEEEEEc-cCCeEEEEeCCCCcEeEEEe
Q 003800 52 GRKRVVVST-EENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSS-DGSTLRAWNLPDGQMVWESF 123 (794)
Q Consensus 52 ~~~~Vyv~t-~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~-~g~~v~A~d~~tG~llWe~~ 123 (794)
+++++|+.+ +.+.|+.||+. |++..+..+.......++. ..+++.++|+. ..+.++.++..+...+|...
T Consensus 37 ~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa-~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~ 108 (255)
T 3qqz_A 37 QSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIE-YIGDNQFVISDERDYAIYVISLTPNSEVKILK 108 (255)
T ss_dssp TTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEE-ECSTTEEEEEETTTTEEEEEEECTTCCEEEEE
T ss_pred CCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeE-EeCCCEEEEEECCCCcEEEEEcCCCCeeeeee
Confidence 467899855 46899999997 9988888786543344553 34555666654 34688888876555566543
No 236
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=90.84 E-value=18 Score=38.04 Aligned_cols=191 Identities=9% Similarity=0.034 Sum_probs=90.6
Q ss_pred EEEEEeCC--CEE--EEEECcCCccceEEEc--CcccceeeeeeeeCCEEEEEEccCCeEEEEeCC-CCcEeEEEeccCc
Q 003800 55 RVVVSTEE--NVI--ASLDLRHGEIFWRHVL--GINDVVDGIDIALGKYVITLSSDGSTLRAWNLP-DGQMVWESFLRGS 127 (794)
Q Consensus 55 ~Vyv~t~~--g~l--~ALn~~tG~ivWR~~l--~~~~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~-tG~llWe~~l~~~ 127 (794)
.+||++.. +-| +.+|+++|++.-.... ........+....++..+++++.+ .++.||.. +|++.........
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~ 82 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG 82 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC
T ss_pred EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC
Confidence 47888763 334 4567889976422222 211122233223344556666555 89999987 9988654332211
Q ss_pred cccCCccccccccccccCCe-EEE--E--------------ECCEEEEEECC-CCcEEEEEec---cCcceeeeeEEEEe
Q 003800 128 KHSKPLLLVPTNLKVDKDSL-ILV--S--------------SKGCLHAVSSI-DGEILWTRDF---AAESVEVQQVIQLD 186 (794)
Q Consensus 128 ~~s~~~~~~~~~~~~~~~~~-V~V--~--------------~~g~l~ald~~-tG~~~W~~~~---~~~~~~~~~~v~s~ 186 (794)
. .+..+ ....++. +++ . .+|.+..++.. +|+..=.... .... .+..+..+.
T Consensus 83 g---~~~~~----~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~sp 154 (365)
T 1jof_A 83 G---HPRAN----DADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENT-GIHGMVFDP 154 (365)
T ss_dssp S---SGGGG----CTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTC-CEEEEEECT
T ss_pred C---CCccE----EECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCC-cceEEEECC
Confidence 1 01111 1222444 233 2 25667676665 5764322211 1111 122333233
Q ss_pred cCCEEEEEEecCCceeEEEEEEcC-CCceeeeeeeecccCccC--ceEEE-cCcEEEEEECCCCeEEEEEee--cce
Q 003800 187 ESDQIYVVGYAGSSQFHAYQINAM-NGELLNHETAAFSGGFVG--DVALV-SSDTLVTLDTTRSILVTVSFK--NRK 257 (794)
Q Consensus 187 ~~~~vyv~~~~g~~~~~v~ald~~-tG~~~w~~~v~~~~~~s~--~~~~v-g~~~lv~~d~~~g~L~v~~l~--sg~ 257 (794)
++..+|+.. .+.. .+..+|.. +|+......+..+..-.+ .+.+- .+..+++.+...+.+.+.++. +|+
T Consensus 155 dG~~l~~~~-~~~~--~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~ 228 (365)
T 1jof_A 155 TETYLYSAD-LTAN--KLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHM 228 (365)
T ss_dssp TSSEEEEEE-TTTT--EEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCC
T ss_pred CCCEEEEEc-CCCC--EEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCc
Confidence 344566544 3322 56666766 888653333332210111 12222 334566666556777777665 465
No 237
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=90.75 E-value=6.5 Score=45.11 Aligned_cols=151 Identities=19% Similarity=0.175 Sum_probs=75.3
Q ss_pred cCCCEEEEEeCC----------CEEEEEECcC------CccceEEEc-Ccccceeeeeee-eCCEEEEEEccC-------
Q 003800 51 TGRKRVVVSTEE----------NVIASLDLRH------GEIFWRHVL-GINDVVDGIDIA-LGKYVITLSSDG------- 105 (794)
Q Consensus 51 ~~~~~Vyv~t~~----------g~l~ALn~~t------G~ivWR~~l-~~~~~i~~l~~~-~g~~~V~Vs~~g------- 105 (794)
++++.|++++++ +.|+.+|..+ |+. ++.. ............ .|+.+++.+..+
T Consensus 139 pDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~ 216 (662)
T 3azo_A 139 PERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAV--RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEG 216 (662)
T ss_dssp TTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGS--EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTC
T ss_pred CCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCce--eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCC
Confidence 456678777765 5899999988 654 3333 222222222122 455566655332
Q ss_pred CeEEEEeCC-CCcE--eEEEecc-CccccCCccccccccccccCCeEEEEE--CC--EEEEEECCCCcEEEEEeccC---
Q 003800 106 STLRAWNLP-DGQM--VWESFLR-GSKHSKPLLLVPTNLKVDKDSLILVSS--KG--CLHAVSSIDGEILWTRDFAA--- 174 (794)
Q Consensus 106 ~~v~A~d~~-tG~l--lWe~~l~-~~~~s~~~~~~~~~~~~~~~~~V~V~~--~g--~l~ald~~tG~~~W~~~~~~--- 174 (794)
..|+.||.. +|+. .-+.... .... ..+.. ..++.+++.+ ++ .|+.+|..+|+..-......
T Consensus 217 ~~i~~~d~~~~g~~~~~~~l~~~~~~~~-~~~~~-------spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~ 288 (662)
T 3azo_A 217 TELKTARVTEDGRFADTRTLLGGPEEAI-AQAEW-------APDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFA 288 (662)
T ss_dssp EEEEEEEECTTSCEEEEEEEEEETTBCE-EEEEE-------CTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSS
T ss_pred cEEEEEEECCCCcccccEEeCCCCCceE-cceEE-------CCCCeEEEEECCCCCeEEEEEECCCCceeeccccccccc
Confidence 479999998 6832 1111111 1111 11111 1134455543 45 88999887876432111111
Q ss_pred -ccee--eeeEEEEecCCEEEEEEecCCceeEEEEEEcCCCce
Q 003800 175 -ESVE--VQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGEL 214 (794)
Q Consensus 175 -~~~~--~~~~v~s~~~~~vyv~~~~g~~~~~v~ald~~tG~~ 214 (794)
+... ...+. ...++.+++.+.. ...+++.+|..+|+.
T Consensus 289 ~p~w~~~~~~~~-~~~~~~~~~~~~~--~~~~l~~~d~~~~~~ 328 (662)
T 3azo_A 289 GPLWTPGMRWFA-PLANGLIAVVHGK--GAAVLGILDPESGEL 328 (662)
T ss_dssp CCCCSTTCCSEE-ECTTSCEEEEEBS--SSCEEEEEETTTTEE
T ss_pred CccccccCceEe-EeCCCEEEEEEEc--CccEEEEEECCCCcE
Confidence 0000 01121 1235556555544 345788899888873
No 238
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=90.63 E-value=17 Score=37.27 Aligned_cols=146 Identities=9% Similarity=0.072 Sum_probs=72.6
Q ss_pred CCEEEE-EeCCCEEEEEECcCCcc-ceEEEcCcccceeeeeeeeCCEEEEEEc-cCCeEEEEeCCCCcEeEEEeccCc-c
Q 003800 53 RKRVVV-STEENVIASLDLRHGEI-FWRHVLGINDVVDGIDIALGKYVITLSS-DGSTLRAWNLPDGQMVWESFLRGS-K 128 (794)
Q Consensus 53 ~~~Vyv-~t~~g~l~ALn~~tG~i-vWR~~l~~~~~i~~l~~~~g~~~V~Vs~-~g~~v~A~d~~tG~llWe~~l~~~-~ 128 (794)
++.+|+ .+..+.|..+|+ +|+. .|+. ......++. ...++.++++. .++.|..||.. |+...-...... .
T Consensus 56 g~~l~~~d~~~~~i~~~~~-~g~~~~~~~---~~~~~~gl~-~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~ 129 (305)
T 3dr2_A 56 QRTLVWSDLVGRRVLGWRE-DGTVDVLLD---ATAFTNGNA-VDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKR 129 (305)
T ss_dssp GTEEEEEETTTTEEEEEET-TSCEEEEEE---SCSCEEEEE-ECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEE
T ss_pred CCEEEEEECCCCEEEEEeC-CCCEEEEeC---CCCccceee-ECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCc
Confidence 444544 456789999998 5652 3332 112233442 22233355554 34689999985 875433221111 1
Q ss_pred ccCCccccccccccccCCeEEEEE-------------------CCEEEEEECCCCcEEEEEeccCcceeeeeEEEEecCC
Q 003800 129 HSKPLLLVPTNLKVDKDSLILVSS-------------------KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESD 189 (794)
Q Consensus 129 ~s~~~~~~~~~~~~~~~~~V~V~~-------------------~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~s~~~~ 189 (794)
. ..+ .....+.++.+++.. .+.|+++|.++|+..-...... +..+..+.++.
T Consensus 130 ~-~~~----~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~----p~gl~~spdg~ 200 (305)
T 3dr2_A 130 L-NSP----NDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMADLDH----PNGLAFSPDEQ 200 (305)
T ss_dssp C-SCC----CCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEEEESS----EEEEEECTTSS
T ss_pred c-CCC----CCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEecCCC----CcceEEcCCCC
Confidence 0 000 011334456677721 3679999998887542212221 22333233445
Q ss_pred EEEEEEecCC--ceeEEEEEEcCCCc
Q 003800 190 QIYVVGYAGS--SQFHAYQINAMNGE 213 (794)
Q Consensus 190 ~vyv~~~~g~--~~~~v~ald~~tG~ 213 (794)
.+|+...... ....+..+|..++.
T Consensus 201 ~lyv~~~~~~~~~~~~i~~~~~~~~~ 226 (305)
T 3dr2_A 201 TLYVSQTPEQGHGSVEITAFAWRDGA 226 (305)
T ss_dssp EEEEEECCC---CCCEEEEEEEETTE
T ss_pred EEEEEecCCcCCCCCEEEEEEecCCC
Confidence 6887654310 00157777766554
No 239
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=90.60 E-value=14 Score=36.32 Aligned_cols=102 Identities=13% Similarity=-0.003 Sum_probs=57.0
Q ss_pred cCCeEEEEeCCCCcEeEEEeccCccccCCccccccccccccCCeEEEEECCEEEEEECCC-CcEEEEEeccCcceeeeeE
Q 003800 104 DGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSSKGCLHAVSSID-GEILWTRDFAAESVEVQQV 182 (794)
Q Consensus 104 ~g~~v~A~d~~tG~llWe~~l~~~~~s~~~~~~~~~~~~~~~~~V~V~~~g~l~ald~~t-G~~~W~~~~~~~~~~~~~~ 182 (794)
.++.|+.||..+|+............ .+.+.+ + +..+++..++.++.+|..+ |+..-......... +..+
T Consensus 20 ~~~~i~~~d~~~~~~~~~~~~~~~v~--~~~~sp-----d-g~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~-~~~~ 90 (297)
T 2ojh_A 20 MRSSIEIFNIRTRKMRVVWQTPELFE--APNWSP-----D-GKYLLLNSEGLLYRLSLAGDPSPEKVDTGFATIC-NNDH 90 (297)
T ss_dssp CCEEEEEEETTTTEEEEEEEESSCCE--EEEECT-----T-SSEEEEEETTEEEEEESSSCCSCEECCCTTCCCB-CSCC
T ss_pred cceeEEEEeCCCCceeeeccCCcceE--eeEECC-----C-CCEEEEEcCCeEEEEeCCCCCCceEecccccccc-ccce
Confidence 45789999999999885555433221 111211 2 3445555799999999999 87653322221111 1122
Q ss_pred EEEecCCEEEEEEecCCceeEEEEEEcCCCce
Q 003800 183 IQLDESDQIYVVGYAGSSQFHAYQINAMNGEL 214 (794)
Q Consensus 183 v~s~~~~~vyv~~~~g~~~~~v~ald~~tG~~ 214 (794)
..+.++..+++.+........++.+|..+|+.
T Consensus 91 ~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~ 122 (297)
T 2ojh_A 91 GISPDGALYAISDKVEFGKSAIYLLPSTGGTP 122 (297)
T ss_dssp EECTTSSEEEEEECTTTSSCEEEEEETTCCCC
T ss_pred EECCCCCEEEEEEeCCCCcceEEEEECCCCce
Confidence 22234444554442322345889999888764
No 240
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=90.36 E-value=19 Score=37.64 Aligned_cols=194 Identities=12% Similarity=0.066 Sum_probs=99.5
Q ss_pred CCEEEEEeCC-----------CEEEEEECcCCccceEEEcCcc-ccee-eeeeeeCCEEEEEEccC--------------
Q 003800 53 RKRVVVSTEE-----------NVIASLDLRHGEIFWRHVLGIN-DVVD-GIDIALGKYVITLSSDG-------------- 105 (794)
Q Consensus 53 ~~~Vyv~t~~-----------g~l~ALn~~tG~ivWR~~l~~~-~~i~-~l~~~~g~~~V~Vs~~g-------------- 105 (794)
+++||+.... +.+..+|+.+. .|++.-... ..-. ...+..++.+++++|.+
T Consensus 65 ~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~--~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ 142 (357)
T 2uvk_A 65 DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN--SWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEA 142 (357)
T ss_dssp TTEEEEECCEEECTTSCEEECCCEEEEETTTT--EEEECSCCCSSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCCCccceeeccEEEEeCCCC--cEEECCCCCCcccccceEEEECCEEEEEeCcCCCcCcccccchhhc
Confidence 6788886543 46899999987 499865432 1111 11123566677777742
Q ss_pred -------------------------CeEEEEeCCCCcEeEEEeccCccccCCccccccccccccCCeEEEEE--------
Q 003800 106 -------------------------STLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSS-------- 152 (794)
Q Consensus 106 -------------------------~~v~A~d~~tG~llWe~~l~~~~~s~~~~~~~~~~~~~~~~~V~V~~-------- 152 (794)
..+..||+.+. .|+.....+.. . ..... ....++.+++..
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~--~W~~~~~~p~~---~-~~~~~-~~~~~~~iyv~GG~~~~~~~ 215 (357)
T 2uvk_A 143 GKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQ--QWSYAGESPWY---G-TAGAA-VVNKGDKTWLINGEAKPGLR 215 (357)
T ss_dssp TTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETTTT--EEEEEEECSSC---C-CBSCE-EEEETTEEEEECCEEETTEE
T ss_pred CCcccchhhhhhhhccccccccCCcccEEEEeCCCC--cEEECCCCCCC---C-ccccc-EEEECCEEEEEeeecCCCcc
Confidence 47999999876 68865332211 0 00000 111256677752
Q ss_pred CCEEEEEECCCCcEEEEEeccCcce-eeeeEEEEecCCEEEEEEecCC-------------------ceeEEEEEEcCCC
Q 003800 153 KGCLHAVSSIDGEILWTRDFAAESV-EVQQVIQLDESDQIYVVGYAGS-------------------SQFHAYQINAMNG 212 (794)
Q Consensus 153 ~g~l~ald~~tG~~~W~~~~~~~~~-~~~~~v~s~~~~~vyv~~~~g~-------------------~~~~v~ald~~tG 212 (794)
...++.+|.....-.|+.-.+.+.- ..........++.+|+++.... ....+.++|+.++
T Consensus 216 ~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~ 295 (357)
T 2uvk_A 216 TDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNG 295 (357)
T ss_dssp CCCEEEEECC---CEEEECCCSSTTTCCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC--
T ss_pred cCceEEEEecCCCCcEEecCCCCCCcccccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCC
Confidence 2357778764444568864433211 0011101246889998764210 0124678898865
Q ss_pred ceeeeeeeecccCccC-ceEEEcCcEEEEEECCC-----CeEEEEEeecce
Q 003800 213 ELLNHETAAFSGGFVG-DVALVSSDTLVTLDTTR-----SILVTVSFKNRK 257 (794)
Q Consensus 213 ~~~w~~~v~~~~~~s~-~~~~vg~~~lv~~d~~~-----g~L~v~~l~sg~ 257 (794)
.|+..-..|..... .++..++.+++..-.+. ..+.++++.+++
T Consensus 296 --~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~ 344 (357)
T 2uvk_A 296 --KWDKSGELSQGRAYGVSLPWNNSLLIIGGETAGGKAVTDSVLITVKDNK 344 (357)
T ss_dssp ---CEEEEECSSCCBSSEEEEETTEEEEEEEECGGGCEEEEEEEEEC-CCS
T ss_pred --ceeeCCCCCCCcccceeEEeCCEEEEEeeeCCCCCEeeeEEEEEEcCcE
Confidence 57775445544443 34444655555543211 235556666655
No 241
>3elq_A Arylsulfate sulfotransferase; beta propeller, protein-substrate complex, periplasm, transesterification, phenol, bacteria; 2.00A {Escherichia coli} PDB: 3ett_A* 3ets_A*
Probab=90.35 E-value=11 Score=43.07 Aligned_cols=64 Identities=8% Similarity=0.062 Sum_probs=38.9
Q ss_pred EEEEECCCC--cEEEEEeccCc--cee----eeeEEEEecCCEEEEEEec-----CCc--eeEEEEEEcCCCceeeeeee
Q 003800 156 LHAVSSIDG--EILWTRDFAAE--SVE----VQQVIQLDESDQIYVVGYA-----GSS--QFHAYQINAMNGELLNHETA 220 (794)
Q Consensus 156 l~ald~~tG--~~~W~~~~~~~--~~~----~~~~v~s~~~~~vyv~~~~-----g~~--~~~v~ald~~tG~~~w~~~v 220 (794)
.+.+|..+. +++|++..+.+ ..+ -.|.. ..++.+..-+.. .+. ..++.-+++.+++++|+..+
T Consensus 472 ~y~ID~~~~Tv~~vw~y~~~~g~~~yS~~~gs~Q~L--~nGN~li~~g~~~~~~~~g~~~~~~i~E~~~~~~evv~e~~~ 549 (571)
T 3elq_A 472 EYKIDEKKGTVQQVWEYGKERGYDFYSPITSIIEYQ--ADRNTMFGFGGSIHLFDVGQPTVGKLNEIDYKTKEVKVEIDV 549 (571)
T ss_dssp EEEEETTTTEEEEEEEECGGGGGGGCCSSCCEEEEE--TTTTEEEEEEEEETTTSTTSEEEEEEEEEETTTCCEEEEEEE
T ss_pred EEEEcCCCCEEEEEEEecCCCCCCcccccccccEEC--CCCCEEEEecccccccccCCCCceeEEEECCCCCEEEEEEEe
Confidence 466998877 89999964321 111 22232 344555544331 011 45889999988899999875
Q ss_pred e
Q 003800 221 A 221 (794)
Q Consensus 221 ~ 221 (794)
.
T Consensus 550 ~ 550 (571)
T 3elq_A 550 L 550 (571)
T ss_dssp E
T ss_pred c
Confidence 4
No 242
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=90.25 E-value=26 Score=38.98 Aligned_cols=162 Identities=9% Similarity=0.012 Sum_probs=89.9
Q ss_pred CCEEEEEeCC--------CEEEEEECcC-----CccceEEEcCccc-cee-----------eeeee--eCCEEEEEEc-c
Q 003800 53 RKRVVVSTEE--------NVIASLDLRH-----GEIFWRHVLGIND-VVD-----------GIDIA--LGKYVITLSS-D 104 (794)
Q Consensus 53 ~~~Vyv~t~~--------g~l~ALn~~t-----G~ivWR~~l~~~~-~i~-----------~l~~~--~g~~~V~Vs~-~ 104 (794)
.+.+||.+-. -.|+.+|.+. |+++-|..++..+ ... +.... .....+++++ .
T Consensus 25 e~~~y~~~~~~~~~~~~~d~la~vDvdp~s~ty~~vi~~~~~p~~gde~HH~gwn~css~~~~~~~~~~~r~~l~v~~l~ 104 (462)
T 2ece_A 25 EDLAYVACLYTGTGINRADFIAVVDVNPKSETYSKIVHKVELPYINDELHHFGWNACSSALCPNGKPNIERRFLIVPGLR 104 (462)
T ss_dssp CSEEEEEEECTTTTCCCCCEEEEEECCTTSTTTTSEEEEEECSSSCCCBCCCEESCCGGGGSTTCCTTCCSCEEEEEBTT
T ss_pred ceEEEEEeeccCCCCCCCCeEEEEECCCCCCCcceEEEEEECCCCCCcccccchhhhhhhcccccCCCccCCEEEEccCC
Confidence 5567776632 3699999988 9999999998743 111 11002 3356677765 4
Q ss_pred CCeEEEEeCCCC--cEeEEEeccCcc------ccCCccccccccccccCCeEEEE--EC------CEEEEEECCCCcEEE
Q 003800 105 GSTLRAWNLPDG--QMVWESFLRGSK------HSKPLLLVPTNLKVDKDSLILVS--SK------GCLHAVSSIDGEILW 168 (794)
Q Consensus 105 g~~v~A~d~~tG--~llWe~~l~~~~------~s~~~~~~~~~~~~~~~~~V~V~--~~------g~l~ald~~tG~~~W 168 (794)
.++|+.+|..+- ++.=...+..+. .+.+-.+ ....++ ++|. .+ |.+..+|.+|++++=
T Consensus 105 s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~-----~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~ 178 (462)
T 2ece_A 105 SSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTV-----HCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLG 178 (462)
T ss_dssp TCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEE-----EECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEE
T ss_pred CCeEEEEECCCCCCCceeeeeechhhcccccCCCcccce-----eECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEE
Confidence 578999998744 222222221000 0000000 011144 6663 33 789999999999886
Q ss_pred EEeccC-cceeeeeEEEEecCCEEEEEEecC----------------CceeEEEEEEcCCCceeeeeeee
Q 003800 169 TRDFAA-ESVEVQQVIQLDESDQIYVVGYAG----------------SSQFHAYQINAMNGELLNHETAA 221 (794)
Q Consensus 169 ~~~~~~-~~~~~~~~v~s~~~~~vyv~~~~g----------------~~~~~v~ald~~tG~~~w~~~v~ 221 (794)
+++.+. +....+.+..+...+.+| .+..| ...-+|..+|..+|+.+.+..+.
T Consensus 179 ~~~~~~~~~~~~Yd~~~~p~~~~mv-sS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg 247 (462)
T 2ece_A 179 KWEIDRGDQYLAYDFWWNLPNEVLV-SSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLG 247 (462)
T ss_dssp ECCSBCTTCCCCCCEEEETTTTEEE-ECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESC
T ss_pred EEccCCCCccccceEEECCCCCEEE-EccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecC
Confidence 555432 211133343333344444 44311 01127889999999877766553
No 243
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=90.17 E-value=8.7 Score=44.27 Aligned_cols=181 Identities=7% Similarity=0.047 Sum_probs=98.3
Q ss_pred CCEEEEEeC-CCEEEEEECcCCccceEEEcCcccceeeeeee--eCCEEEEEEc------------------cCCeEEEE
Q 003800 53 RKRVVVSTE-ENVIASLDLRHGEIFWRHVLGINDVVDGIDIA--LGKYVITLSS------------------DGSTLRAW 111 (794)
Q Consensus 53 ~~~Vyv~t~-~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~--~g~~~V~Vs~------------------~g~~v~A~ 111 (794)
++.+|+... .+.|+.+|+++.+...-..++......++++. -..+.|++++ ..+.+.++
T Consensus 101 G~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvI 180 (595)
T 1fwx_A 101 GRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAV 180 (595)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEE
T ss_pred CCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEE
Confidence 556888665 46899999999998886667654334455431 2344556663 23589999
Q ss_pred eCCCCcEeEEEeccCccccCCccccccccccccCCeEEEEE-C-CEEEEEECCCC-cEEEEEeccCcceeeeeEEEEecC
Q 003800 112 NLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSS-K-GCLHAVSSIDG-EILWTRDFAAESVEVQQVIQLDES 188 (794)
Q Consensus 112 d~~tG~llWe~~l~~~~~s~~~~~~~~~~~~~~~~~V~V~~-~-g~l~ald~~tG-~~~W~~~~~~~~~~~~~~v~s~~~ 188 (794)
|.++.++.|+....+... ...+ ..+ ++.+|+.+ + ....-++..+- ..-|-.-...+.. ... ...+
T Consensus 181 D~~t~~v~~qI~Vgg~pd---~~~~----spd-Gk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~--~~~--v~~G 248 (595)
T 1fwx_A 181 DADKWEVAWQVLVSGNLD---NCDA----DYE-GKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEI--EKA--IAAG 248 (595)
T ss_dssp ETTTTEEEEEEEESSCCC---CEEE----CSS-SSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHH--HHH--HHHT
T ss_pred ECCCCeEEEEEEeCCCcc---ceEE----CCC-CCEEEEEecCcccCcchhhccccccceEEEeeccce--eEe--ccCC
Confidence 999999999999865321 1111 112 34455543 1 11111111111 1112111110000 000 1234
Q ss_pred CEEEEEEecCCceeEEEEEEcCC--Cce-eeeeeeecccCccCceEEE-cCcEEEEEECCCCeEEEEEeecc
Q 003800 189 DQIYVVGYAGSSQFHAYQINAMN--GEL-LNHETAAFSGGFVGDVALV-SSDTLVTLDTTRSILVTVSFKNR 256 (794)
Q Consensus 189 ~~vyv~~~~g~~~~~v~ald~~t--G~~-~w~~~v~~~~~~s~~~~~v-g~~~lv~~d~~~g~L~v~~l~sg 256 (794)
...|+ + .|..+|.++ |+. +....+. ....+ +.+- .+..+++.+.....+.++|+.+.
T Consensus 249 k~~~i----~----~V~VID~~~~~~~~~~~~Ipvg--~~PhG-v~~sPDGk~v~V~~~~s~~VsVid~~~~ 309 (595)
T 1fwx_A 249 DYQEL----N----GVKVVDGRKEASSLFTRYIPIA--NNPHG-CNMAPDKKHLCVAGKLSPTVTVLDVTRF 309 (595)
T ss_dssp CSEEE----T----TEEEEECSGGGCCSSEEEEEEE--SSCCC-EEECTTSSEEEEECTTSSBEEEEEGGGH
T ss_pred CeeEE----C----cEEEEeCcccCCceeEEEEecC--CCceE-EEEcCCCCEEEEeCCCCCeEEEEECccc
Confidence 44553 3 388999998 665 4444332 22222 2222 45577778777788999999864
No 244
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=90.08 E-value=2.3 Score=44.64 Aligned_cols=67 Identities=10% Similarity=0.034 Sum_probs=32.9
Q ss_pred CCCEEEEEeCCCEEEEEECcCCc-cceEEEcCc-ccceeeeeeeeCCEEEEEEccCCeEEEEeCCCCcE
Q 003800 52 GRKRVVVSTEENVIASLDLRHGE-IFWRHVLGI-NDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQM 118 (794)
Q Consensus 52 ~~~~Vyv~t~~g~l~ALn~~tG~-ivWR~~l~~-~~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~tG~l 118 (794)
+++.+++++.+|.|...|.++|+ ..=...+.. ...+..+.....+..++.++.++.++.||..+++.
T Consensus 66 ~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 134 (377)
T 3dwl_C 66 KSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQEND 134 (377)
T ss_dssp TTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----
T ss_pred CCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCccc
Confidence 35678899999999999999987 111122221 12333332222344455455567999999999874
No 245
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=89.97 E-value=21 Score=37.39 Aligned_cols=177 Identities=10% Similarity=0.150 Sum_probs=95.7
Q ss_pred CCEEEEEeC--CCEEEEEECcCCccceEEEcCcc-cc-eeeeeeeeCCEEEEEEcc-C---------CeEEEEeCCCCcE
Q 003800 53 RKRVVVSTE--ENVIASLDLRHGEIFWRHVLGIN-DV-VDGIDIALGKYVITLSSD-G---------STLRAWNLPDGQM 118 (794)
Q Consensus 53 ~~~Vyv~t~--~g~l~ALn~~tG~ivWR~~l~~~-~~-i~~l~~~~g~~~V~Vs~~-g---------~~v~A~d~~tG~l 118 (794)
+++||+... .+.+..+|+.+..-.|+..-+-+ .. .....+..++.++++||. . +.+..||+.+.+
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~- 97 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNS- 97 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEETTEEEEECCEEECTTSCEEECCCEEEEETTTTE-
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEECCEEEEEcCCCCCCCccceeeccEEEEeCCCCc-
Confidence 677888664 56899999987667899764433 11 111113456666666764 1 368999998764
Q ss_pred eEEEeccCccccCCccccccccccccCCeEEEEEC-----------------------------------------CEEE
Q 003800 119 VWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSSK-----------------------------------------GCLH 157 (794)
Q Consensus 119 lWe~~l~~~~~s~~~~~~~~~~~~~~~~~V~V~~~-----------------------------------------g~l~ 157 (794)
|+.-...... +........ .++.+++..+ ..+.
T Consensus 98 -W~~~~~~~p~----~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 171 (357)
T 2uvk_A 98 -WVKLMSHAPM----GMAGHVTFV-HNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLL 171 (357)
T ss_dssp -EEECSCCCSS----CCSSEEEEE-ETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEE
T ss_pred -EEECCCCCCc----ccccceEEE-ECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEE
Confidence 8865432201 111100012 2567777642 5799
Q ss_pred EEECCCCcEEEEEeccCcc--eeeeeEEEEecCCEEEEEEecCC---ceeEEEEEEcCCCceeeeeeeecc--cCccC-c
Q 003800 158 AVSSIDGEILWTRDFAAES--VEVQQVIQLDESDQIYVVGYAGS---SQFHAYQINAMNGELLNHETAAFS--GGFVG-D 229 (794)
Q Consensus 158 ald~~tG~~~W~~~~~~~~--~~~~~~v~s~~~~~vyv~~~~g~---~~~~v~ald~~tG~~~w~~~v~~~--~~~s~-~ 229 (794)
.+|..+. .|+.-.+.+. .....+ ...++.+|+++...+ ..-.+.++|...-...|+..-..+ ..... .
T Consensus 172 ~yd~~~~--~W~~~~~~p~~~~~~~~~--~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~ 247 (357)
T 2uvk_A 172 SFDPSTQ--QWSYAGESPWYGTAGAAV--VNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGF 247 (357)
T ss_dssp EEETTTT--EEEEEEECSSCCCBSCEE--EEETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSCE
T ss_pred EEeCCCC--cEEECCCCCCCCcccccE--EEECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccce
Confidence 9998876 6876543332 110122 245888998753210 122567777644555688743333 22323 2
Q ss_pred eEEEcCcEEEE
Q 003800 230 VALVSSDTLVT 240 (794)
Q Consensus 230 ~~~vg~~~lv~ 240 (794)
+...++.++++
T Consensus 248 ~~~~~~~iyv~ 258 (357)
T 2uvk_A 248 AGISNDSLIFA 258 (357)
T ss_dssp EEEETTEEEEE
T ss_pred EEEECCEEEEE
Confidence 34445555544
No 246
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=89.91 E-value=6 Score=41.44 Aligned_cols=67 Identities=7% Similarity=0.103 Sum_probs=42.7
Q ss_pred CCCEEEEEeCCCEEEEEECcCCccceEEEcCcc-cceeeeeeeeCCEEEEEEccCCeEEEEeCCCCcE
Q 003800 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVLGIN-DVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQM 118 (794)
Q Consensus 52 ~~~~Vyv~t~~g~l~ALn~~tG~ivWR~~l~~~-~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~tG~l 118 (794)
+++.++.++.++.+.-.|..+++..-...+... ..+..+.....+..++.++.++.++.||..++..
T Consensus 72 ~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~ 139 (345)
T 3fm0_A 72 CGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDE 139 (345)
T ss_dssp TSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSC
T ss_pred CCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCC
Confidence 466788899999988888877765444455432 2344442223344454455567999999988754
No 247
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=89.88 E-value=22 Score=41.67 Aligned_cols=199 Identities=9% Similarity=0.013 Sum_probs=107.5
Q ss_pred CCCEEEEEeCC-----CEEEEEECcCCccceEEEc-Cc-----cc-ceeeeeeee--CCEEEEEEccC------CeEEEE
Q 003800 52 GRKRVVVSTEE-----NVIASLDLRHGEIFWRHVL-GI-----ND-VVDGIDIAL--GKYVITLSSDG------STLRAW 111 (794)
Q Consensus 52 ~~~~Vyv~t~~-----g~l~ALn~~tG~ivWR~~l-~~-----~~-~i~~l~~~~--g~~~V~Vs~~g------~~v~A~ 111 (794)
.++.||+.... +.+..+|+.+++ |+..- +. +. ......... ++.++++||.+ +.+..|
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~--W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~y 473 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDK--IDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIF 473 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSC--EEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEE
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCe--EEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEE
Confidence 36678887653 569999999885 99865 31 11 011111345 66666667632 358889
Q ss_pred eCCCCcEeEEEeccCccccCCccccccccccccCCeEEEEE----CCEEEEEECCCCcEEEEEeccC-----cceeeeeE
Q 003800 112 NLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSS----KGCLHAVSSIDGEILWTRDFAA-----ESVEVQQV 182 (794)
Q Consensus 112 d~~tG~llWe~~l~~~~~s~~~~~~~~~~~~~~~~~V~V~~----~g~l~ald~~tG~~~W~~~~~~-----~~~~~~~~ 182 (794)
|..+. .|+.-...+.. ..........++.++|.+ ++.+..+|..++ .|+.-.+. +......+
T Consensus 474 d~~t~--~W~~~~~~p~~-----R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~--~W~~~~~~g~~p~~r~~~~a~ 544 (695)
T 2zwa_A 474 DMKTR--EWSMIKSLSHT-----RFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEE--IFKDVTPKDEFFQNSLVSAGL 544 (695)
T ss_dssp ETTTT--EEEECCCCSBC-----CBSCEEEECTTSCEEEECCBCSSCSEEEEETTTT--EEEECCCSSGGGGSCCBSCEE
T ss_pred eCCCC--cEEECCCCCCC-----cccceEEEEcCCEEEEECCCCCCCCEEEEECCCC--ceEEccCCCCCCCcccceeEE
Confidence 98776 58765322211 111110121156677763 126999999886 48875432 11111112
Q ss_pred EEEecCCEEEEEEecC----CceeEEEEEEcCCCc----eeeeeeeecc-cCccC-ceEEEc-CcEEEEEEC-------C
Q 003800 183 IQLDESDQIYVVGYAG----SSQFHAYQINAMNGE----LLNHETAAFS-GGFVG-DVALVS-SDTLVTLDT-------T 244 (794)
Q Consensus 183 v~s~~~~~vyv~~~~g----~~~~~v~ald~~tG~----~~w~~~v~~~-~~~s~-~~~~vg-~~~lv~~d~-------~ 244 (794)
+.....+.+|+.|... ...-.+.++|+.+.+ ..|+.....| ....+ .+..++ +.++++.-. .
T Consensus 545 v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~ 624 (695)
T 2zwa_A 545 EFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDR 624 (695)
T ss_dssp EEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCT
T ss_pred EEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCC
Confidence 2111227899887542 112468899999887 3476643322 22222 344446 555544321 1
Q ss_pred CCeEEEEEeecceeeeEEE
Q 003800 245 RSILVTVSFKNRKIAFQET 263 (794)
Q Consensus 245 ~g~L~v~~l~sg~~~~~~~ 263 (794)
...+.+.|+.+++ ....
T Consensus 625 ~~~v~~yd~~t~~--W~~~ 641 (695)
T 2zwa_A 625 TNSIISLDPLSET--LTSI 641 (695)
T ss_dssp TTSEEEEETTTTE--EEEC
T ss_pred CCeEEEEECCCCe--EEEe
Confidence 3458888888876 5533
No 248
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=89.69 E-value=2.2 Score=49.79 Aligned_cols=105 Identities=12% Similarity=0.116 Sum_probs=62.1
Q ss_pred CCEEEEEeCCCEEEEEECcCCccceEEEcCcccc----eeeeeee-eCCEEEEEEcc--------CCeEEEEeCCCCcEe
Q 003800 53 RKRVVVSTEENVIASLDLRHGEIFWRHVLGINDV----VDGIDIA-LGKYVITLSSD--------GSTLRAWNLPDGQMV 119 (794)
Q Consensus 53 ~~~Vyv~t~~g~l~ALn~~tG~ivWR~~l~~~~~----i~~l~~~-~g~~~V~Vs~~--------g~~v~A~d~~tG~ll 119 (794)
++.+++.+.+|.|...|.++|+. ++.+..... +..+... .|+.+++.+.. ++.++.||..+|+.+
T Consensus 26 dg~~~~~~~d~~i~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~ 103 (719)
T 1z68_A 26 GQEYLHQSADNNIVLYNIETGQS--YTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFV 103 (719)
T ss_dssp SSEEEEECTTSCEEEEESSSCCE--EEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC
T ss_pred CCeEEEEcCCCCEEEEEcCCCcE--EEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccc
Confidence 44666677789999999999985 344432211 2233222 34545554431 368999999999874
Q ss_pred EEEeccCccccCCccccccccccccCCeEEEEECCEEEEEECCCCcEE
Q 003800 120 WESFLRGSKHSKPLLLVPTNLKVDKDSLILVSSKGCLHAVSSIDGEIL 167 (794)
Q Consensus 120 We~~l~~~~~s~~~~~~~~~~~~~~~~~V~V~~~g~l~ald~~tG~~~ 167 (794)
....+.... ..+.+. ++ ++.++...++.|+..|..+|+.+
T Consensus 104 ~~~~l~~~~--~~~~~S-----PD-G~~la~~~~~~i~~~~~~~g~~~ 143 (719)
T 1z68_A 104 RGNELPRPI--QYLCWS-----PV-GSKLAYVYQNNIYLKQRPGDPPF 143 (719)
T ss_dssp CSSCCCSSB--CCEEEC-----SS-TTCEEEEETTEEEEESSTTSCCE
T ss_pred cceecCccc--ccceEC-----CC-CCEEEEEECCeEEEEeCCCCCcE
Confidence 322333221 122222 23 33455557889999999888753
No 249
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=89.50 E-value=19 Score=37.63 Aligned_cols=70 Identities=14% Similarity=0.088 Sum_probs=47.0
Q ss_pred CCEEEEEeC------CCEEEEEECcCCccceEEEcCccc-----ceeeeeeeeCCEEEEEEc----cCCeEEEEeCCCCc
Q 003800 53 RKRVVVSTE------ENVIASLDLRHGEIFWRHVLGIND-----VVDGIDIALGKYVITLSS----DGSTLRAWNLPDGQ 117 (794)
Q Consensus 53 ~~~Vyv~t~------~g~l~ALn~~tG~ivWR~~l~~~~-----~i~~l~~~~g~~~V~Vs~----~g~~v~A~d~~tG~ 117 (794)
++++|+++. .+.|..+|++||+++-+..++... ....+.+...++.++++. ..+.|+.||..+|+
T Consensus 77 ~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~ 156 (343)
T 2qe8_A 77 NGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGL 156 (343)
T ss_dssp SSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCC
T ss_pred CCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCC
Confidence 578999874 478999999999987776664321 112332222345677753 34689999999887
Q ss_pred EeEEEe
Q 003800 118 MVWESF 123 (794)
Q Consensus 118 llWe~~ 123 (794)
. |+..
T Consensus 157 ~-~r~~ 161 (343)
T 2qe8_A 157 A-ARVL 161 (343)
T ss_dssp E-EEEC
T ss_pred E-EEEe
Confidence 4 6653
No 250
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=89.12 E-value=6.8 Score=41.06 Aligned_cols=157 Identities=13% Similarity=0.034 Sum_probs=75.2
Q ss_pred cCCCEEEEEeCCCEEEEEECcCCccceEEEcCcccceeeeee-------------------eeCCEEEEEE----ccCCe
Q 003800 51 TGRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDI-------------------ALGKYVITLS----SDGST 107 (794)
Q Consensus 51 ~~~~~Vyv~t~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~-------------------~~g~~~V~Vs----~~g~~ 107 (794)
++++.|++++.++.|+.+|..+|+..--..........+-.+ ..++.+++.. .....
T Consensus 90 pdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~ 169 (396)
T 3c5m_A 90 TDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCR 169 (396)
T ss_dssp TTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEE
T ss_pred CCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcce
Confidence 346678888888899999999997643322222100000000 0111111111 23457
Q ss_pred EEEEeCCCCcEeEEEeccCccccCCccccccccccccCCeEEEEEC-------CEEEEEECCCCcEEEEEeccCcceeee
Q 003800 108 LRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSSK-------GCLHAVSSIDGEILWTRDFAAESVEVQ 180 (794)
Q Consensus 108 v~A~d~~tG~llWe~~l~~~~~s~~~~~~~~~~~~~~~~~V~V~~~-------g~l~ald~~tG~~~W~~~~~~~~~~~~ 180 (794)
|+.||..+|+...-....... ..+.+ ..+.++.+++..+ ..|+.+|..+|+..--.. ..+...+.
T Consensus 170 l~~~d~~~g~~~~~~~~~~~~--~~~~~-----sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~ 241 (396)
T 3c5m_A 170 LIKVDIETGELEVIHQDTAWL--GHPIY-----RPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKE-HAEGESCT 241 (396)
T ss_dssp EEEEETTTCCEEEEEEESSCE--EEEEE-----ETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSC-CCTTEEEE
T ss_pred EEEEECCCCcEEeeccCCccc--ccceE-----CCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeec-cCCCcccc
Confidence 999999999876544321111 01111 1111223333331 467777776664321111 11111122
Q ss_pred eEEEEecCCEEEEEEec-CCceeEEEEEEcCCCcee
Q 003800 181 QVIQLDESDQIYVVGYA-GSSQFHAYQINAMNGELL 215 (794)
Q Consensus 181 ~~v~s~~~~~vyv~~~~-g~~~~~v~ald~~tG~~~ 215 (794)
.+..+.++..+++.+.. +.....++.+|+.+|+..
T Consensus 242 ~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~ 277 (396)
T 3c5m_A 242 HEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENE 277 (396)
T ss_dssp EEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEE
T ss_pred ceEECCCCCEEEEEecCCCCccceEEEEECCCCCeE
Confidence 23223344445555554 322235889999999764
No 251
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=89.03 E-value=12 Score=44.12 Aligned_cols=62 Identities=13% Similarity=0.111 Sum_probs=35.0
Q ss_pred EEEEEECCCCcEE-EEEeccCcceeeeeEEEEecCCEEEEEEecCCceeEEEEEEcCCCceeeee
Q 003800 155 CLHAVSSIDGEIL-WTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHE 218 (794)
Q Consensus 155 ~l~ald~~tG~~~-W~~~~~~~~~~~~~~v~s~~~~~vyv~~~~g~~~~~v~ald~~tG~~~w~~ 218 (794)
.++.+|..+|... |+.-.+...... ..+ ...++.+|+.+..++.+.+++.+|+.+|...|+.
T Consensus 295 ~l~~~d~~~~~~~~~~~l~~~~~~~~-~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~ 357 (741)
T 1yr2_A 295 TVHVARVTNGKIGPVTALIPDLKAQW-DFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDT 357 (741)
T ss_dssp EEEEEEEETTEECCCEEEECSSSSCE-EEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEE
T ss_pred eEEEEECCCCCCcccEEecCCCCceE-EEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEE
Confidence 7888888887333 332111111111 122 2467788877765544568999999886423444
No 252
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=88.49 E-value=40 Score=38.71 Aligned_cols=149 Identities=11% Similarity=0.109 Sum_probs=79.0
Q ss_pred CEEEEEeCCCEEEEEECcCCccceEEEcCcccceeeeeee-eCCEEEEEEccCCeEEEEeCCC-----CcEeEEEeccCc
Q 003800 54 KRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIA-LGKYVITLSSDGSTLRAWNLPD-----GQMVWESFLRGS 127 (794)
Q Consensus 54 ~~Vyv~t~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~-~g~~~V~Vs~~g~~v~A~d~~t-----G~llWe~~l~~~ 127 (794)
+.++++. ++.+..+|.++|+..- .......+..+... .|+.+++ +. ++.|+.||..+ |+..-.......
T Consensus 93 ~~~~~~~-~~~i~~~d~~~~~~~~--l~~~~~~~~~~~~SpdG~~la~-~~-~~~i~v~~~~~~~~~~g~~~~~~~~~~~ 167 (706)
T 2z3z_A 93 GLVVLFT-QGGLVGFDMLARKVTY--LFDTNEETASLDFSPVGDRVAY-VR-NHNLYIARGGKLGEGMSRAIAVTIDGTE 167 (706)
T ss_dssp TEEEEEE-TTEEEEEETTTTEEEE--EECCTTCCTTCEECTTSSEEEE-EE-TTEEEEEECBCTTSCCCCCEESCSCCBT
T ss_pred CeEEEEE-CCEEEEEECCCCceEE--ccCCcccccCCcCCCCCCEEEE-EE-CCeEEEEecCcccccCCCcEEeccCCCC
Confidence 5555554 4999999999997632 22222222222222 4555555 43 46899999998 876532222111
Q ss_pred cc-------------cCCccccccccccccCCeEEEEE----------------------------------CCEEEEEE
Q 003800 128 KH-------------SKPLLLVPTNLKVDKDSLILVSS----------------------------------KGCLHAVS 160 (794)
Q Consensus 128 ~~-------------s~~~~~~~~~~~~~~~~~V~V~~----------------------------------~g~l~ald 160 (794)
.. ...+.+. .+ ++.+++.. +..|+.+|
T Consensus 168 ~~~~g~~~~~ee~~~~~~~~~S-----pD-g~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d 241 (706)
T 2z3z_A 168 TLVYGQAVHQREFGIEKGTFWS-----PK-GSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYH 241 (706)
T ss_dssp TEEESSCCGGGCTTCCCSEEEC-----TT-SSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEE
T ss_pred CeEcccchhhhhcCCCceEEEC-----CC-CCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEE
Confidence 00 0111111 22 23344332 25688888
Q ss_pred CCCCcEEEEEeccCcceeeeeEEEEecCCEEEEEEecC-CceeEEEEEEcCCCc
Q 003800 161 SIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAG-SSQFHAYQINAMNGE 213 (794)
Q Consensus 161 ~~tG~~~W~~~~~~~~~~~~~~v~s~~~~~vyv~~~~g-~~~~~v~ald~~tG~ 213 (794)
..+|+..+..........+..+..+.++..+++.+..+ .....+..+|+.+|+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~ 295 (706)
T 2z3z_A 242 LATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGR 295 (706)
T ss_dssp TTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCC
T ss_pred CCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCc
Confidence 88888765543211111122333233455566655543 334688999999994
No 253
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=88.17 E-value=10 Score=43.80 Aligned_cols=105 Identities=4% Similarity=-0.046 Sum_probs=59.5
Q ss_pred CCEEEEEeCCCEEEEEECcCCccceEEEcCccc----ceeeeeee-eCCEEEEEEcc--------CCeEEEEeCCCCcEe
Q 003800 53 RKRVVVSTEENVIASLDLRHGEIFWRHVLGIND----VVDGIDIA-LGKYVITLSSD--------GSTLRAWNLPDGQMV 119 (794)
Q Consensus 53 ~~~Vyv~t~~g~l~ALn~~tG~ivWR~~l~~~~----~i~~l~~~-~g~~~V~Vs~~--------g~~v~A~d~~tG~ll 119 (794)
++++++.+.+|.|...|+++|+..-. +.... .+..+... .|+.+++.+.. .+.++.||..+|+.
T Consensus 27 dg~~~~~~~dg~i~~~d~~~g~~~~~--~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~- 103 (723)
T 1xfd_A 27 DTEFIYREQKGTVRLWNVETNTSTVL--IEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP- 103 (723)
T ss_dssp SSCBCCCCSSSCEEEBCGGGCCCEEE--ECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-
T ss_pred CCcEEEEeCCCCEEEEECCCCcEEEE--eccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce-
Confidence 34444447789999999999987533 33221 13333222 34445554432 26899999999986
Q ss_pred EEEeccCcc---ccCCccccccccccccCCeEEEEECCEEEEEECCCCcEE
Q 003800 120 WESFLRGSK---HSKPLLLVPTNLKVDKDSLILVSSKGCLHAVSSIDGEIL 167 (794)
Q Consensus 120 We~~l~~~~---~s~~~~~~~~~~~~~~~~~V~V~~~g~l~ald~~tG~~~ 167 (794)
.+....... . ..+.+ .++ ++.++..+++.|+..|..+|+.+
T Consensus 104 ~~l~~~~~~~~~~-~~~~~-----SPd-G~~la~~~~~~i~~~~~~~g~~~ 147 (723)
T 1xfd_A 104 QSLDPPEVSNAKL-QYAGW-----GPK-GQQLIFIFENNIYYCAHVGKQAI 147 (723)
T ss_dssp EECCCTTCCSCCC-SBCCB-----CSS-TTCEEEEETTEEEEESSSSSCCE
T ss_pred EeccCCccccccc-cccEE-----CCC-CCEEEEEECCeEEEEECCCCceE
Confidence 222211110 1 11111 223 34555567789999999988754
No 254
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=87.90 E-value=22 Score=36.94 Aligned_cols=146 Identities=12% Similarity=0.089 Sum_probs=78.1
Q ss_pred CCEEEEEEccCCeEEEEeCCCCcEeEEEeccCccccCCccccccccccccCCeEEEEECCEEEEEECCCCcEEEEEeccC
Q 003800 95 GKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSSKGCLHAVSSIDGEILWTRDFAA 174 (794)
Q Consensus 95 g~~~V~Vs~~g~~v~A~d~~tG~llWe~~l~~~~~s~~~~~~~~~~~~~~~~~V~V~~~g~l~ald~~tG~~~W~~~~~~ 174 (794)
++.++++...++.|+.||+.+|+.. .+...... ..+ ..+.++.+++.....|+.+|..+|+..--.....
T Consensus 60 ~~~l~~~d~~~~~i~~~d~~~~~~~-~~~~~~~v-----~~i----~~~~dg~l~v~~~~gl~~~d~~~g~~~~~~~~~~ 129 (326)
T 2ghs_A 60 SGTAWWFNILERELHELHLASGRKT-VHALPFMG-----SAL----AKISDSKQLIASDDGLFLRDTATGVLTLHAELES 129 (326)
T ss_dssp TTEEEEEEGGGTEEEEEETTTTEEE-EEECSSCE-----EEE----EEEETTEEEEEETTEEEEEETTTCCEEEEECSST
T ss_pred CCEEEEEECCCCEEEEEECCCCcEE-EEECCCcc-----eEE----EEeCCCeEEEEECCCEEEEECCCCcEEEEeeCCC
Confidence 3455565555679999999988754 22222211 111 2233567777777779999999998754333221
Q ss_pred --cceeeeeEEEEecCCEEEEEEecC---CceeEEEEEEcCCCceeeeeeeecccCccCceEEE-cCcEEEEEECCCCeE
Q 003800 175 --ESVEVQQVIQLDESDQIYVVGYAG---SSQFHAYQINAMNGELLNHETAAFSGGFVGDVALV-SSDTLVTLDTTRSIL 248 (794)
Q Consensus 175 --~~~~~~~~v~s~~~~~vyv~~~~g---~~~~~v~ald~~tG~~~w~~~v~~~~~~s~~~~~v-g~~~lv~~d~~~g~L 248 (794)
+...+..+. ...++.+|+..... .....++.+| +|+...-. ........+.+- .++.+++.+...+.+
T Consensus 130 ~~~~~~~~~i~-~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~---~~~~~~~~i~~s~dg~~lyv~~~~~~~I 203 (326)
T 2ghs_A 130 DLPGNRSNDGR-MHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLF---ADISIPNSICFSPDGTTGYFVDTKVNRL 203 (326)
T ss_dssp TCTTEEEEEEE-ECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEE---EEESSEEEEEECTTSCEEEEEETTTCEE
T ss_pred CCCCCCCCCEE-ECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEee---CCCcccCCeEEcCCCCEEEEEECCCCEE
Confidence 111122232 23466788765421 0124788888 67653211 110111112222 233555667666788
Q ss_pred EEEEee--cc
Q 003800 249 VTVSFK--NR 256 (794)
Q Consensus 249 ~v~~l~--sg 256 (794)
++.++. +|
T Consensus 204 ~~~d~~~~~G 213 (326)
T 2ghs_A 204 MRVPLDARTG 213 (326)
T ss_dssp EEEEBCTTTC
T ss_pred EEEEcccccC
Confidence 888875 55
No 255
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=87.72 E-value=28 Score=40.47 Aligned_cols=99 Identities=8% Similarity=0.046 Sum_probs=50.6
Q ss_pred CEEEEEECCCCcEEEEE-eccCcceeeeeEEEEecCCEEEEEEecCCceeEEEEEEcCCCce-eeeeeeecccCccCceE
Q 003800 154 GCLHAVSSIDGEILWTR-DFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGEL-LNHETAAFSGGFVGDVA 231 (794)
Q Consensus 154 g~l~ald~~tG~~~W~~-~~~~~~~~~~~~v~s~~~~~vyv~~~~g~~~~~v~ald~~tG~~-~w~~~v~~~~~~s~~~~ 231 (794)
..++.+|..+|...|.. ....... . ..+ +..++.+|+.+..++...+++.+|+.+|+. .|+.-+......- ..-
T Consensus 259 ~~i~~~d~~~~~~~~~~l~~~~~~~-~-~~~-~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~-~~s 334 (693)
T 3iuj_A 259 NRLYVKDLSQENAPLLTVQGDLDAD-V-SLV-DNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL-TVH 334 (693)
T ss_dssp CEEEEEETTSTTCCCEEEECSSSSC-E-EEE-EEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE-EEE
T ss_pred cEEEEEECCCCCCceEEEeCCCCce-E-EEE-eccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE-EEE
Confidence 47888887776433322 2111111 1 112 346788888776554456899999998875 3554332222221 111
Q ss_pred EEcCcEEEEEECCCC--eEEEEEeecce
Q 003800 232 LVSSDTLVTLDTTRS--ILVTVSFKNRK 257 (794)
Q Consensus 232 ~vg~~~lv~~d~~~g--~L~v~~l~sg~ 257 (794)
..++.++.....++ .|++.++..+.
T Consensus 335 -~~g~~lv~~~~~~g~~~l~~~d~~g~~ 361 (693)
T 3iuj_A 335 -SGSGYLFAEYMVDATARVEQFDYEGKR 361 (693)
T ss_dssp -EETTEEEEEEEETTEEEEEEECTTSCE
T ss_pred -EECCEEEEEEEECCeeEEEEEECCCCe
Confidence 22333333322233 56777766544
No 256
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=87.18 E-value=25 Score=34.95 Aligned_cols=149 Identities=9% Similarity=0.021 Sum_probs=80.2
Q ss_pred CCEEEEEeC-CCEEEEEECcCCccceEEEcCcc-cceeeeeeeeCCEEEEEEcc---CCeEEEEeCCCCcEeEEEeccCc
Q 003800 53 RKRVVVSTE-ENVIASLDLRHGEIFWRHVLGIN-DVVDGIDIALGKYVITLSSD---GSTLRAWNLPDGQMVWESFLRGS 127 (794)
Q Consensus 53 ~~~Vyv~t~-~g~l~ALn~~tG~ivWR~~l~~~-~~i~~l~~~~g~~~V~Vs~~---g~~v~A~d~~tG~llWe~~l~~~ 127 (794)
++.+|++.. .+.|..+|.. |+.. +...... ....++.+...++.++++.. .+.|+.++. +|...=... ..
T Consensus 90 ~~~lyv~d~~~~~I~~~~~~-g~~~-~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~-dg~~~~~~~-~~- 164 (267)
T 1npe_A 90 GRTIFWTDSQLDRIEVAKMD-GTQR-RVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHM-DGTNRRILA-QD- 164 (267)
T ss_dssp TTEEEEEETTTTEEEEEETT-SCSC-EEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEET-TSCCCEEEE-CT-
T ss_pred CCeEEEEECCCCEEEEEEcC-CCCE-EEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEec-CCCCcEEEE-EC-
Confidence 567888875 4688888875 4321 1222211 11223322223456666543 357888876 454321111 11
Q ss_pred cccCCcccccccccccc-CCeEEEEE--CCEEEEEECCCCcEEEEEeccCcceeeeeEEEEecCCEEEEEEecCCceeEE
Q 003800 128 KHSKPLLLVPTNLKVDK-DSLILVSS--KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHA 204 (794)
Q Consensus 128 ~~s~~~~~~~~~~~~~~-~~~V~V~~--~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~s~~~~~vyv~~~~g~~~~~v 204 (794)
.... +..++.+. ++.+|+.. .++++++|..++...-.... .. .|..+. ..++.+|+....++ .+
T Consensus 165 ~~~~-----P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~--~~-~P~gi~--~d~~~lyva~~~~~---~v 231 (267)
T 1npe_A 165 NLGL-----PNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEG--LQ-YPFAVT--SYGKNLYYTDWKTN---SV 231 (267)
T ss_dssp TCSC-----EEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEEC--CC-SEEEEE--EETTEEEEEETTTT---EE
T ss_pred CCCC-----CcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecC--CC-CceEEE--EeCCEEEEEECCCC---eE
Confidence 1101 11112332 46777764 67999999875543322221 11 244442 46889998765544 79
Q ss_pred EEEEcCCCceeeeee
Q 003800 205 YQINAMNGELLNHET 219 (794)
Q Consensus 205 ~ald~~tG~~~w~~~ 219 (794)
..+|+.+|+.+-...
T Consensus 232 ~~~d~~~g~~~~~i~ 246 (267)
T 1npe_A 232 IAMDLAISKEMDTFH 246 (267)
T ss_dssp EEEETTTTEEEEEEC
T ss_pred EEEeCCCCCceEEEc
Confidence 999999999876654
No 257
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=87.16 E-value=25 Score=34.95 Aligned_cols=192 Identities=13% Similarity=0.034 Sum_probs=98.8
Q ss_pred CCCEEEEEeC-CCEEEEEECcCCccceEEEcCcc-cceeeeeeeeCCEEEEEEc-cCCeEEEEeCCCCcEeEEEeccCcc
Q 003800 52 GRKRVVVSTE-ENVIASLDLRHGEIFWRHVLGIN-DVVDGIDIALGKYVITLSS-DGSTLRAWNLPDGQMVWESFLRGSK 128 (794)
Q Consensus 52 ~~~~Vyv~t~-~g~l~ALn~~tG~ivWR~~l~~~-~~i~~l~~~~g~~~V~Vs~-~g~~v~A~d~~tG~llWe~~l~~~~ 128 (794)
.++.||++.. .+.|..+|+.++.. +...... ....++.+...++.++++. ..+.|..+|.. |... +......
T Consensus 46 ~~~~ly~~d~~~~~I~~~~~~g~~~--~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~-g~~~-~~~~~~~- 120 (267)
T 1npe_A 46 VDKVVYWTDISEPSIGRASLHGGEP--TTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMD-GTQR-RVLFDTG- 120 (267)
T ss_dssp TTTEEEEEETTTTEEEEEESSSCCC--EEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCSC-EEEECSS-
T ss_pred CCCEEEEEECCCCEEEEEecCCCCc--EEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcC-CCCE-EEEEECC-
Confidence 3678999886 57999999876653 2222222 1222442222344555553 45689999875 4322 1111111
Q ss_pred ccCCcccccccccccc-CCeEEEEE----CCEEEEEECCCCcEEEEEeccCcceeeeeEEEEecCCEEEEEEecCCceeE
Q 003800 129 HSKPLLLVPTNLKVDK-DSLILVSS----KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFH 203 (794)
Q Consensus 129 ~s~~~~~~~~~~~~~~-~~~V~V~~----~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~s~~~~~vyv~~~~g~~~~~ 203 (794)
...+. .++.+. ++.+|+.. .+.+++++.. |...=..... ....|..+.....++.+|+.....+ +
T Consensus 121 ~~~P~-----~i~vd~~~g~lyv~~~~~~~~~I~~~~~d-g~~~~~~~~~-~~~~P~gia~d~~~~~lyv~d~~~~---~ 190 (267)
T 1npe_A 121 LVNPR-----GIVTDPVRGNLYWTDWNRDNPKIETSHMD-GTNRRILAQD-NLGLPNGLTFDAFSSQLCWVDAGTH---R 190 (267)
T ss_dssp CSSEE-----EEEEETTTTEEEEEECCSSSCEEEEEETT-SCCCEEEECT-TCSCEEEEEEETTTTEEEEEETTTT---E
T ss_pred CCCcc-----EEEEeeCCCEEEEEECCCCCcEEEEEecC-CCCcEEEEEC-CCCCCcEEEEcCCCCEEEEEECCCC---E
Confidence 10110 112333 46677764 3578888754 3221111111 1112444432234678998665433 7
Q ss_pred EEEEEcCCCceeeeee-eecccCccCceEEEcCcEEEEEECCCCeEEEEEeecceeeeEEEe
Q 003800 204 AYQINAMNGELLNHET-AAFSGGFVGDVALVSSDTLVTLDTTRSILVTVSFKNRKIAFQETH 264 (794)
Q Consensus 204 v~ald~~tG~~~w~~~-v~~~~~~s~~~~~vg~~~lv~~d~~~g~L~v~~l~sg~~~~~~~~ 264 (794)
+..+|+.++....-.. ...|.+ + .+.++.++++|..++.+.+++..+|+. .+.++
T Consensus 191 I~~~~~~g~~~~~~~~~~~~P~g----i-~~d~~~lyva~~~~~~v~~~d~~~g~~-~~~i~ 246 (267)
T 1npe_A 191 AECLNPAQPGRRKVLEGLQYPFA----V-TSYGKNLYYTDWKTNSVIAMDLAISKE-MDTFH 246 (267)
T ss_dssp EEEEETTEEEEEEEEECCCSEEE----E-EEETTEEEEEETTTTEEEEEETTTTEE-EEEEC
T ss_pred EEEEecCCCceEEEecCCCCceE----E-EEeCCEEEEEECCCCeEEEEeCCCCCc-eEEEc
Confidence 8889987554322111 111211 1 134567778887788999999988872 44444
No 258
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=86.95 E-value=28 Score=35.21 Aligned_cols=107 Identities=14% Similarity=0.153 Sum_probs=57.7
Q ss_pred CCCEEEEEeCCCEEEEEECcCCccceEEEcCc-ccceeeeeeee--CCEEEEEEccCCeEEEEeCCCCc--EeEEEeccC
Q 003800 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVLGI-NDVVDGIDIAL--GKYVITLSSDGSTLRAWNLPDGQ--MVWESFLRG 126 (794)
Q Consensus 52 ~~~~Vyv~t~~g~l~ALn~~tG~ivWR~~l~~-~~~i~~l~~~~--g~~~V~Vs~~g~~v~A~d~~tG~--llWe~~l~~ 126 (794)
+++.+++++.++.|.-.|..++.......+.. .+.+..+.... .+..++.++.++.|+.||..+|+ .+-......
T Consensus 20 ~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~ 99 (297)
T 2pm7_B 20 YGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHS 99 (297)
T ss_dssp TSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCS
T ss_pred CCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCC
Confidence 46679999999999999887653333334432 22343332211 13344445557899999999885 222222222
Q ss_pred ccccCCcccccccccccc-CCeEEEEE-CCEEEEEECCCC
Q 003800 127 SKHSKPLLLVPTNLKVDK-DSLILVSS-KGCLHAVSSIDG 164 (794)
Q Consensus 127 ~~~s~~~~~~~~~~~~~~-~~~V~V~~-~g~l~ald~~tG 164 (794)
... ..+.+. .+. +..++..+ ++.+...|..++
T Consensus 100 ~~v-~~v~~~-----p~~~g~~l~s~s~d~~v~~wd~~~~ 133 (297)
T 2pm7_B 100 ASV-NSVQWA-----PHEYGPMLLVASSDGKVSVVEFKEN 133 (297)
T ss_dssp SCE-EEEEEC-----CGGGCSEEEEEETTSEEEEEEBCSS
T ss_pred Cce-eEEEeC-----cCCCCcEEEEEECCCcEEEEEecCC
Confidence 111 111111 111 23344443 888888887766
No 259
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=86.44 E-value=29 Score=39.58 Aligned_cols=68 Identities=13% Similarity=0.162 Sum_probs=38.3
Q ss_pred cCCCEEEEEeCC--------CEEEEEECc-CCcc-ceEEEcCc-ccceeeeeeeeCCEEEEEEccCC--eEEEEeCCCCc
Q 003800 51 TGRKRVVVSTEE--------NVIASLDLR-HGEI-FWRHVLGI-NDVVDGIDIALGKYVITLSSDGS--TLRAWNLPDGQ 117 (794)
Q Consensus 51 ~~~~~Vyv~t~~--------g~l~ALn~~-tG~i-vWR~~l~~-~~~i~~l~~~~g~~~V~Vs~~g~--~v~A~d~~tG~ 117 (794)
++++.|++++.+ +.|..+|.. +|+. ..++.... ...+......-++.+++.+..++ +|+.||..+|+
T Consensus 197 pDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~ 276 (662)
T 3azo_A 197 PDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGA 276 (662)
T ss_dssp TTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCC
T ss_pred CCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCc
Confidence 445667666633 479999998 6732 23333322 12222221122334666665555 89999988887
Q ss_pred E
Q 003800 118 M 118 (794)
Q Consensus 118 l 118 (794)
.
T Consensus 277 ~ 277 (662)
T 3azo_A 277 A 277 (662)
T ss_dssp E
T ss_pred e
Confidence 4
No 260
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=86.38 E-value=38 Score=36.27 Aligned_cols=74 Identities=11% Similarity=0.068 Sum_probs=40.5
Q ss_pred CCEEEEEe-------------CCCEEEEEECcC--CccceEEEcCc--c----cceeeeeeee---CCEEEEEEccC---
Q 003800 53 RKRVVVST-------------EENVIASLDLRH--GEIFWRHVLGI--N----DVVDGIDIAL---GKYVITLSSDG--- 105 (794)
Q Consensus 53 ~~~Vyv~t-------------~~g~l~ALn~~t--G~ivWR~~l~~--~----~~i~~l~~~~---g~~~V~Vs~~g--- 105 (794)
++++|+++ ..|.|+.+|+++ ++.. +..+.. . ....|+.... +...++|...+
T Consensus 60 ~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~-~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~ 138 (355)
T 3sre_A 60 NGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVS-ELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSS 138 (355)
T ss_dssp TSEEEEEECCC-----------CCEEEEEETTSSSCCEE-ECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTC
T ss_pred CCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceE-EEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCC
Confidence 67899998 689999999984 4321 222222 1 1112332222 33345554322
Q ss_pred C--eEEEEeCCCCcEeEEEeccCc
Q 003800 106 S--TLRAWNLPDGQMVWESFLRGS 127 (794)
Q Consensus 106 ~--~v~A~d~~tG~llWe~~l~~~ 127 (794)
. .+.-+|..++.+.+-....+.
T Consensus 139 s~ielf~~d~~~~~~~~~~~~~g~ 162 (355)
T 3sre_A 139 STVEVFKFQEEEKSLLHLKTIRHK 162 (355)
T ss_dssp CEEEEEEEETTTTEEEEEEEECCT
T ss_pred CeEEEEEEECCCCEEEEEeccccC
Confidence 2 366777777777776666543
No 261
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=86.14 E-value=27 Score=34.16 Aligned_cols=140 Identities=11% Similarity=0.007 Sum_probs=71.8
Q ss_pred CCCEEEEEECcCCccceEEEcCcccceeeeeeeeCCEEEEEEccCCeEEEEeCCC-CcEeEEEeccC-ccccCCcccccc
Q 003800 61 EENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPD-GQMVWESFLRG-SKHSKPLLLVPT 138 (794)
Q Consensus 61 ~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~t-G~llWe~~l~~-~~~s~~~~~~~~ 138 (794)
.++.|..+|.++|++......+. .+..+.....+..++.++ ++.|+.||..+ |+..-...... ... ..+.+.
T Consensus 20 ~~~~i~~~d~~~~~~~~~~~~~~--~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~-~~~~~s-- 93 (297)
T 2ojh_A 20 MRSSIEIFNIRTRKMRVVWQTPE--LFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICN-NDHGIS-- 93 (297)
T ss_dssp CCEEEEEEETTTTEEEEEEEESS--CCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBC-SCCEEC--
T ss_pred cceeEEEEeCCCCceeeeccCCc--ceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccc-cceEEC--
Confidence 35789999999998774443322 243343333344444455 46999999999 87653222211 111 111111
Q ss_pred ccccccCCeEEEEE-----CCEEEEEECCCCcEEEEEeccCcceeeeeEEEEecCCEEEEEEecCCceeEEEEEEcCCCc
Q 003800 139 NLKVDKDSLILVSS-----KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGE 213 (794)
Q Consensus 139 ~~~~~~~~~V~V~~-----~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~s~~~~~vyv~~~~g~~~~~v~ald~~tG~ 213 (794)
.+ +..+++.. ...|+.++..+|...-- ..... ...+..+.++..+++.+... ...+++.+|..+|+
T Consensus 94 ---pd-g~~l~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~---~~~~~~spdg~~l~~~~~~~-~~~~l~~~~~~~~~ 164 (297)
T 2ojh_A 94 ---PD-GALYAISDKVEFGKSAIYLLPSTGGTPRLM-TKNLP---SYWHGWSPDGKSFTYCGIRD-QVFDIYSMDIDSGV 164 (297)
T ss_dssp ---TT-SSEEEEEECTTTSSCEEEEEETTCCCCEEC-CSSSS---EEEEEECTTSSEEEEEEEET-TEEEEEEEETTTCC
T ss_pred ---CC-CCEEEEEEeCCCCcceEEEEECCCCceEEe-ecCCC---ccceEECCCCCEEEEEECCC-CceEEEEEECCCCc
Confidence 12 23444444 36788888777763221 11111 11222223444455333332 24678888888876
Q ss_pred ee
Q 003800 214 LL 215 (794)
Q Consensus 214 ~~ 215 (794)
..
T Consensus 165 ~~ 166 (297)
T 2ojh_A 165 ET 166 (297)
T ss_dssp EE
T ss_pred ce
Confidence 53
No 262
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=86.04 E-value=25 Score=40.82 Aligned_cols=66 Identities=14% Similarity=0.155 Sum_probs=39.0
Q ss_pred CCCEEEEEeC-----CCEEEEEECcCCccceEEEcCccc-------ceeeeeee-eCCEEEEEEc-cC---CeEEEEeCC
Q 003800 52 GRKRVVVSTE-----ENVIASLDLRHGEIFWRHVLGIND-------VVDGIDIA-LGKYVITLSS-DG---STLRAWNLP 114 (794)
Q Consensus 52 ~~~~Vyv~t~-----~g~l~ALn~~tG~ivWR~~l~~~~-------~i~~l~~~-~g~~~V~Vs~-~g---~~v~A~d~~ 114 (794)
+++++|.... .+.|+..+..+|+ |++.+.... .+.+.... .|+.+++... .| ..|+.||..
T Consensus 78 dG~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~ 155 (695)
T 2bkl_A 78 RNGRFFYVRTHKDKEKAILYWRQGESGQ--EKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVD 155 (695)
T ss_dssp ETTEEEEEEECTTCSSCEEEEEESTTSC--CEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETT
T ss_pred ECCEEEEEEEcCCCeEEEEEEEcCCCCC--cEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECC
Confidence 4666666554 3568888876664 777764321 12222222 4555555432 22 589999999
Q ss_pred CCcEe
Q 003800 115 DGQMV 119 (794)
Q Consensus 115 tG~ll 119 (794)
+|+.+
T Consensus 156 tg~~~ 160 (695)
T 2bkl_A 156 SGEWS 160 (695)
T ss_dssp TCCBC
T ss_pred CCCCc
Confidence 99864
No 263
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=85.54 E-value=34 Score=39.30 Aligned_cols=65 Identities=12% Similarity=0.103 Sum_probs=40.0
Q ss_pred cCCCEEEEEeCC---------CEEEEEECcCCccceEEEcCccc----ceeeeee-eeCCEEEEEEccCCeEEEEeCCCC
Q 003800 51 TGRKRVVVSTEE---------NVIASLDLRHGEIFWRHVLGIND----VVDGIDI-ALGKYVITLSSDGSTLRAWNLPDG 116 (794)
Q Consensus 51 ~~~~~Vyv~t~~---------g~l~ALn~~tG~ivWR~~l~~~~----~i~~l~~-~~g~~~V~Vs~~g~~v~A~d~~tG 116 (794)
++++.|++++.+ +.+.-.|.++|+. + .+.... .+..+.. ..|+.+++++. +.|+.||..+|
T Consensus 70 pDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~--~-~l~~~~~~~~~~~~~~~SPdG~~la~~~~--~~i~~~~~~~g 144 (723)
T 1xfd_A 70 PDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP--Q-SLDPPEVSNAKLQYAGWGPKGQQLIFIFE--NNIYYCAHVGK 144 (723)
T ss_dssp TTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC--E-ECCCTTCCSCCCSBCCBCSSTTCEEEEET--TEEEEESSSSS
T ss_pred CCCCEEEEEecCccceeecceeeEEEEECCCCce--E-eccCCccccccccccEECCCCCEEEEEEC--CeEEEEECCCC
Confidence 345667777653 7888999999986 2 332221 1222211 24556666554 58999999999
Q ss_pred cEeE
Q 003800 117 QMVW 120 (794)
Q Consensus 117 ~llW 120 (794)
+..-
T Consensus 145 ~~~~ 148 (723)
T 1xfd_A 145 QAIR 148 (723)
T ss_dssp CCEE
T ss_pred ceEE
Confidence 8653
No 264
>3elq_A Arylsulfate sulfotransferase; beta propeller, protein-substrate complex, periplasm, transesterification, phenol, bacteria; 2.00A {Escherichia coli} PDB: 3ett_A* 3ets_A*
Probab=85.32 E-value=14 Score=42.25 Aligned_cols=99 Identities=13% Similarity=0.060 Sum_probs=58.0
Q ss_pred ceeecccccEeeEEecc-----------CceeeeeeeeeccCCCEEEEEeCCCEEEEEECcCCccceEEEcCccccee--
Q 003800 22 SLYEDQVGLMDWHQQYI-----------GKVKHAVFHTQKTGRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVD-- 88 (794)
Q Consensus 22 Al~edqvG~~dW~~~~v-----------G~~~~~~f~~~~~~~~~Vyv~t~~g~l~ALn~~tG~ivWR~~l~~~~~i~-- 88 (794)
+..=|..|.+.|..... |.+.-..|.+ ..++.+..+.. ..++-+|. +|+++|+..++......
T Consensus 177 ~~i~D~~G~lrW~~~~~~~~~~~~~~~~~~g~l~~~~g--~~nG~l~~g~G-~~i~elD~-~Gkvv~~~~lp~g~~~~HH 252 (571)
T 3elq_A 177 TFIVDTEGEYRWWLDQDTFYDGRDRDINKRGYLMGIRE--TPRGTFTAVQG-QHWYEFDM-MGQVLEDHKLPRGFADATH 252 (571)
T ss_dssp EEEECTTSCEEEECCGGGTCCSSSCCGGGCSCCEEEEE--CTTSCEEEEEB-TEEEEECT-TCCEEEEEECCTTEECBCS
T ss_pred eEEEcCCCcEEEEeCcccccccceeeccCCCeEEEEEe--cCCCCEEEecC-cEEEEECC-CCcEEEEEECCCCcccccc
Confidence 34558899999998652 1111112322 12445555543 46999996 89999999987531100
Q ss_pred eeee-eeCCEEEEEE-------------ccCCeEEEEeCCCCcEeEEEecc
Q 003800 89 GIDI-ALGKYVITLS-------------SDGSTLRAWNLPDGQMVWESFLR 125 (794)
Q Consensus 89 ~l~~-~~g~~~V~Vs-------------~~g~~v~A~d~~tG~llWe~~l~ 125 (794)
-... ..|.-++.+. .-+..++-.| .+|+++|++.+.
T Consensus 253 D~~~l~nGn~Lv~v~~~d~~~~dG~~~~~vdD~I~EVD-~tGeVv~eW~~~ 302 (571)
T 3elq_A 253 ESIETPNGTVLLRVGKSNYRRDDGVHVTTIRDHILEVD-KSGRVVDVWDLT 302 (571)
T ss_dssp CEEECTTSCEEEEEEETTEECTTSCEECCCSCEEEEEC-TTSCEEEEEEHH
T ss_pred ceEEcCCCcEEEEEecccccCCCCcccceeccEEEEEC-CCCCEEEEEEhH
Confidence 0111 1232233221 1134788999 899999999864
No 265
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=85.14 E-value=12 Score=39.09 Aligned_cols=70 Identities=9% Similarity=-0.092 Sum_probs=39.8
Q ss_pred cCCCEEEEEeCC---CEEEEEECcCCccceEEEcCcccceee-eeee-eCCEEEEEEccCCeEEEEeCCCCcEeEEEe
Q 003800 51 TGRKRVVVSTEE---NVIASLDLRHGEIFWRHVLGINDVVDG-IDIA-LGKYVITLSSDGSTLRAWNLPDGQMVWESF 123 (794)
Q Consensus 51 ~~~~~Vyv~t~~---g~l~ALn~~tG~ivWR~~l~~~~~i~~-l~~~-~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~ 123 (794)
++++.|++.... ..|+.+|.++|+. ++.......... .... .++.+++++.. +.++.||..+|+..--..
T Consensus 45 pdG~~l~~~~~~~g~~~l~~~d~~~~~~--~~l~~~~~~~~~~~~~spdg~~l~~~~~~-~~l~~~d~~~~~~~~~~~ 119 (396)
T 3c5m_A 45 QDGKKLLFAGDFDGNRNYYLLNLETQQA--VQLTEGKGDNTFGGFISTDERAFFYVKNE-LNLMKVDLETLEEQVIYT 119 (396)
T ss_dssp TTSCEEEEEECTTSSCEEEEEETTTTEE--EECCCSSCBCTTTCEECTTSSEEEEEETT-TEEEEEETTTCCEEEEEE
T ss_pred CCCCEEEEEEecCCCceEEEEECCCCcE--EEeecCCCCccccceECCCCCEEEEEEcC-CcEEEEECCCCCcEEEEe
Confidence 345565555432 4799999999874 332222211111 2112 45556665554 589999999998654333
No 266
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=84.82 E-value=18 Score=41.51 Aligned_cols=109 Identities=15% Similarity=0.146 Sum_probs=64.5
Q ss_pred cCCCEEEEEeCCCEEEEEECcCCcc------ceEE-EcCc---ccceeeeeeeeCCEEEEEEccCCeEEEEeCCCCcE--
Q 003800 51 TGRKRVVVSTEENVIASLDLRHGEI------FWRH-VLGI---NDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQM-- 118 (794)
Q Consensus 51 ~~~~~Vyv~t~~g~l~ALn~~tG~i------vWR~-~l~~---~~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~tG~l-- 118 (794)
++++.+++++++|.|--.|.++|.+ ..+. .... ...+..+.. ..++ ++.++.++.++.||..++..
T Consensus 139 PDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVaw-SPdg-Laass~D~tVrlWd~~~~~~~~ 216 (588)
T 2j04_A 139 PIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVW-YEDV-LVAALSNNSVFSMTVSASSHQP 216 (588)
T ss_dssp SSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEE-ETTE-EEEEETTCCEEEECCCSSSSCC
T ss_pred CCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEE-cCCc-EEEEeCCCeEEEEECCCCcccc
Confidence 4577799999999999999999874 2332 2222 122333322 2344 44456678999999988885
Q ss_pred eEEEe--ccCccccCCccccccccccccCCeEEEEECCEEEEEECCCCcE-EEEE
Q 003800 119 VWESF--LRGSKHSKPLLLVPTNLKVDKDSLILVSSKGCLHAVSSIDGEI-LWTR 170 (794)
Q Consensus 119 lWe~~--l~~~~~s~~~~~~~~~~~~~~~~~V~V~~~g~l~ald~~tG~~-~W~~ 170 (794)
.|+.- ...... ..+ +.. ++.++..+++++...|..+|+. ....
T Consensus 217 ~~~tL~~~h~~~V----~sv----aFs-g~~LASa~~~tIkLWd~~~~~~~~~~~ 262 (588)
T 2j04_A 217 VSRMIQNASRRKI----TDL----KIV-DYKVVLTCPGYVHKIDLKNYSISSLKT 262 (588)
T ss_dssp CEEEEECCCSSCC----CCE----EEE-TTEEEEECSSEEEEEETTTTEEEEEEC
T ss_pred ceeeecccccCcE----EEE----EEE-CCEEEEEeCCeEEEEECCCCeEEEEEc
Confidence 35442 221111 111 112 3444445677888888777776 4443
No 267
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=83.02 E-value=59 Score=35.57 Aligned_cols=199 Identities=12% Similarity=0.133 Sum_probs=97.5
Q ss_pred CCEEEEEeCCC-----EEEEEECcCCccceEEEcCcccceeeeeeeeCCEEEEEEc-cCCeEEEEeCCCCcEeEEEeccC
Q 003800 53 RKRVVVSTEEN-----VIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSS-DGSTLRAWNLPDGQMVWESFLRG 126 (794)
Q Consensus 53 ~~~Vyv~t~~g-----~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~-~g~~v~A~d~~tG~llWe~~l~~ 126 (794)
++.||++...+ .+..+++..+ ..+...+.......++.+...++.++++. ..++|+.+|+.+|...+......
T Consensus 192 dG~lyVad~~~~~~~~gv~~~~~~~~-~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~ 270 (433)
T 4hw6_A 192 NGDMVVVDDQSSDTNTGIYLFTRASG-FTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMD 270 (433)
T ss_dssp TCCEEEEECCSCTTSEEEEEECGGGT-TCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECS
T ss_pred CCCEEEEcCCCCcccceEEEEECCCC-eeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccC
Confidence 44488887633 4666666544 33333332111112332222255677654 45789999999998855543222
Q ss_pred ccccCCccccccccccccCC-eEEEEE--CCEEEEEECC--CCcE----EEEEeccCc----------ce-eeeeEEEE-
Q 003800 127 SKHSKPLLLVPTNLKVDKDS-LILVSS--KGCLHAVSSI--DGEI----LWTRDFAAE----------SV-EVQQVIQL- 185 (794)
Q Consensus 127 ~~~s~~~~~~~~~~~~~~~~-~V~V~~--~g~l~ald~~--tG~~----~W~~~~~~~----------~~-~~~~~v~s- 185 (794)
... ....+ +.+.++ .+|+.. ++++++++.. +|.. .+.-..... .+ .|..+...
T Consensus 271 ~~~-~~~~i-----a~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~ 344 (433)
T 4hw6_A 271 TKG-SNFHI-----VWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVK 344 (433)
T ss_dssp CCS-SCEEE-----EECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEE
T ss_pred CCC-CcccE-----EEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEc
Confidence 110 11001 233334 477764 6789997754 4532 121110000 01 24444311
Q ss_pred -------ecCCEEEEEEecCCceeEEEEEEcCCCceeeeeeeec--ccC-----ccCceEEEcCcEEEEEECCCCeEEEE
Q 003800 186 -------DESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAF--SGG-----FVGDVALVSSDTLVTLDTTRSILVTV 251 (794)
Q Consensus 186 -------~~~~~vyv~~~~g~~~~~v~ald~~tG~~~w~~~v~~--~~~-----~s~~~~~vg~~~lv~~d~~~g~L~v~ 251 (794)
...+.+|+....+. ++..+++ +|....-.-... ..+ .....-+ ....-+|+|+.+|.|++.
T Consensus 345 n~~y~~dd~~g~lyvaD~~n~---~I~~~~~-~G~v~t~~G~g~~~~~G~~dG~~~~~~~~-~~P~giavd~~~g~lyVa 419 (433)
T 4hw6_A 345 NEAYAGEEDEYDFYFCDRDSH---TVRVLTP-EGRVTTYAGRGNSREWGYVDGELRSQALF-NHPTSIAYDMKRKCFYIG 419 (433)
T ss_dssp CGGGTTSSCCEEEEEEETTTT---EEEEECT-TSEEEEEECCCTTCSSCCBCEETTTTCBC-SSEEEEEEETTTTEEEEE
T ss_pred cccccccCCCCcEEEEECCCC---EEEEECC-CCCEEEEEeCCCCCccccCCCccccccEe-CCCcEEEEECCCCEEEEE
Confidence 25667887654433 6777885 775432211000 001 0000001 223346788567889999
Q ss_pred EeecceeeeEEEee
Q 003800 252 SFKNRKIAFQETHL 265 (794)
Q Consensus 252 ~l~sg~~~~~~~~l 265 (794)
|..+.+ ++.+.+
T Consensus 420 D~~n~r--Ir~i~~ 431 (433)
T 4hw6_A 420 DCDNHR--VRKIAP 431 (433)
T ss_dssp EGGGTE--EEEEEE
T ss_pred eCCCCE--EEEEec
Confidence 988877 565554
No 268
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=82.87 E-value=15 Score=41.64 Aligned_cols=151 Identities=10% Similarity=0.104 Sum_probs=77.5
Q ss_pred CEEEEEeCCCEEEEEECcCCccc---eEE------EcCc-ccceeeeeeeeCCEEEEEEccCCeEEEEeCCCCc-EeEEE
Q 003800 54 KRVVVSTEENVIASLDLRHGEIF---WRH------VLGI-NDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQ-MVWES 122 (794)
Q Consensus 54 ~~Vyv~t~~g~l~ALn~~tG~iv---WR~------~l~~-~~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~tG~-llWe~ 122 (794)
+.+..++.+|.|.-.|..+|+.. ... .+.. ...+..+... .++.++.++.++.|+.||..+|. +....
T Consensus 226 ~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s-~~~~lasgs~DgtV~lWD~~~~~~~~~~~ 304 (524)
T 2j04_B 226 GCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFL-SPTTVVCGFKNGFVAEFDLTDPEVPSFYD 304 (524)
T ss_dssp CEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEES-SSSEEEEEETTSEEEEEETTBCSSCSEEE
T ss_pred ceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEec-CCCeEEEEeCCCEEEEEECCCCCCceEEe
Confidence 56777899999999999888532 100 1111 1123333212 23455556667899999999884 44444
Q ss_pred eccCccccCCccccccccccccCC-eEEEE-E-CCEEEEEECCCCcEEEEEe--ccCcceeeeeEEEEecCCEEEEEEec
Q 003800 123 FLRGSKHSKPLLLVPTNLKVDKDS-LILVS-S-KGCLHAVSSIDGEILWTRD--FAAESVEVQQVIQLDESDQIYVVGYA 197 (794)
Q Consensus 123 ~l~~~~~s~~~~~~~~~~~~~~~~-~V~V~-~-~g~l~ald~~tG~~~W~~~--~~~~~~~~~~~v~s~~~~~vyv~~~~ 197 (794)
......+ .++... ...++ .+++. + |+.+...|..+|+..=... ..... ...+..+ .++..++.+..
T Consensus 305 ~~H~~~V-~sv~~~-----~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~--v~~v~fs-p~~~~l~s~~~ 375 (524)
T 2j04_B 305 QVHDSYI-LSVSTA-----YSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSN--LVPVVYC-PQIYSYIYSDG 375 (524)
T ss_dssp ECSSSCE-EEEEEE-----CCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCS--CCCEEEE-TTTTEEEEECS
T ss_pred ecccccE-EEEEEE-----cCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCc--ccceEeC-CCcCeEEEeCC
Confidence 4433222 111000 01123 45553 3 8888888888776422221 11111 1122212 22444544433
Q ss_pred CCceeEEEEEEcCCCceeee
Q 003800 198 GSSQFHAYQINAMNGELLNH 217 (794)
Q Consensus 198 g~~~~~v~ald~~tG~~~w~ 217 (794)
.+ .+..+|..+|..+..
T Consensus 376 d~---tv~lwd~~~~~~~~~ 392 (524)
T 2j04_B 376 AS---SLRAVPSRAAFAVHP 392 (524)
T ss_dssp SS---EEEEEETTCTTCCEE
T ss_pred CC---cEEEEECccccccee
Confidence 22 577789888876544
No 269
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=82.72 E-value=18 Score=41.50 Aligned_cols=149 Identities=8% Similarity=0.041 Sum_probs=79.3
Q ss_pred ccCCCEEEEEeCCCEEEEEECcCCccceEEEcCccc-----ceeeeeeeeCCEEEEEEccCCeEEEEeCCCCcE------
Q 003800 50 KTGRKRVVVSTEENVIASLDLRHGEIFWRHVLGIND-----VVDGIDIALGKYVITLSSDGSTLRAWNLPDGQM------ 118 (794)
Q Consensus 50 ~~~~~~Vyv~t~~g~l~ALn~~tG~ivWR~~l~~~~-----~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~tG~l------ 118 (794)
++++..+.+++.+|.+...|.++ .+.+ ++... .+..+....++..++.++.+++|+.||+.+|.+
T Consensus 94 SPdG~~LAs~s~dg~V~iwd~~~---~l~~-l~~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i 169 (588)
T 2j04_A 94 SPIDDWMAVLSNNGNVSVFKDNK---MLTN-LDSKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFY 169 (588)
T ss_dssp CSSSSCEEEEETTSCEEEEETTE---EEEE-CCCSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCE
T ss_pred CCCCCEEEEEeCCCcEEEEeCCc---eeee-ccCCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccce
Confidence 45677788999999999888433 5554 23221 244443344566777677788999999999863
Q ss_pred -eEEEeccCccccCCccccccccccccCCeEEEE-ECCEEEEEECCCCcE--EEEEeccCcceeeeeEEEEecCCEEEEE
Q 003800 119 -VWESFLRGSKHSKPLLLVPTNLKVDKDSLILVS-SKGCLHAVSSIDGEI--LWTRDFAAESVEVQQVIQLDESDQIYVV 194 (794)
Q Consensus 119 -lWe~~l~~~~~s~~~~~~~~~~~~~~~~~V~V~-~~g~l~ald~~tG~~--~W~~~~~~~~~~~~~~v~s~~~~~vyv~ 194 (794)
+-......... ..++... +...++ +++. .|+.++..|..+++. .|..-.+........+..+ + ...+.
T Consensus 170 ~l~ti~~~~~gh--~~~V~sV--awSPdg-Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g-~~LAS 241 (588)
T 2j04_A 170 FESSIRLSDAGS--KDWVTHI--VWYEDV-LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--D-YKVVL 241 (588)
T ss_dssp EEEEEECSCTTC--CCCEEEE--EEETTE-EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--T-TEEEE
T ss_pred eeeeeecccccc--cccEEEE--EEcCCc-EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--C-CEEEE
Confidence 33333222111 0112111 122234 4333 377788888777663 2322111111112233222 3 33333
Q ss_pred EecCCceeEEEEEEcCCCce
Q 003800 195 GYAGSSQFHAYQINAMNGEL 214 (794)
Q Consensus 195 ~~~g~~~~~v~ald~~tG~~ 214 (794)
+..+ .+...|..+|+.
T Consensus 242 a~~~----tIkLWd~~~~~~ 257 (588)
T 2j04_A 242 TCPG----YVHKIDLKNYSI 257 (588)
T ss_dssp ECSS----EEEEEETTTTEE
T ss_pred EeCC----eEEEEECCCCeE
Confidence 4333 778888888777
No 270
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=82.56 E-value=16 Score=41.10 Aligned_cols=67 Identities=12% Similarity=-0.015 Sum_probs=42.3
Q ss_pred cCCCEEEEEeCC----CEEEEEECcCCccceEEEcCcccceeeeeeeeCCEEEEEEccCC--eEEEEeCCCCcEe
Q 003800 51 TGRKRVVVSTEE----NVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGS--TLRAWNLPDGQMV 119 (794)
Q Consensus 51 ~~~~~Vyv~t~~----g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~~g~--~v~A~d~~tG~ll 119 (794)
++++.|+.++.+ +.|+.+|.++|+.. +.....+.+......-++..++.+..++ +|+.||..+|++.
T Consensus 159 pDG~~la~~~~~~~~~~~i~~~d~~~g~~~--~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~ 231 (582)
T 3o4h_A 159 IRGDLIAGLGFFGGGRVSLFTSNLSSGGLR--VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE 231 (582)
T ss_dssp EETTEEEEEEEEETTEEEEEEEETTTCCCE--EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE
T ss_pred CCCCEEEEEEEcCCCCeEEEEEcCCCCCce--EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE
Confidence 346667766655 67999999999854 3333333333332233444455454455 8999999999987
No 271
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=82.52 E-value=63 Score=36.11 Aligned_cols=103 Identities=15% Similarity=0.169 Sum_probs=53.3
Q ss_pred CeEEEE-ECCEEEEEECCCCcEEEEEeccCcceeeeeEEEEecCCEEEEEEecCCceeEEEEEEcCCCceeeeeeeeccc
Q 003800 146 SLILVS-SKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAFSG 224 (794)
Q Consensus 146 ~~V~V~-~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~s~~~~~vyv~~~~g~~~~~v~ald~~tG~~~w~~~v~~~~ 224 (794)
+.+++. ..+.+..+|..+|+..-....+. . .+..+.++..++..+..++....++.+|+.+|+... +....
T Consensus 123 ~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~--~---~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~---l~~~~ 194 (582)
T 3o4h_A 123 AVVFTGATEDRVALYALDGGGLRELARLPG--F---GFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRV---FDSGE 194 (582)
T ss_dssp CEEEEEECSSCEEEEEEETTEEEEEEEESS--C---EEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCEE---ECCSS
T ss_pred eEEEEecCCCCceEEEccCCcEEEeecCCC--c---eEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceE---eecCC
Confidence 334443 24444455767776543333222 1 122234566666555553333468999999998652 21111
Q ss_pred CccCceEEE-cCcEEEEEECCCC--eEEEEEeecce
Q 003800 225 GFVGDVALV-SSDTLVTLDTTRS--ILVTVSFKNRK 257 (794)
Q Consensus 225 ~~s~~~~~v-g~~~lv~~d~~~g--~L~v~~l~sg~ 257 (794)
+....+.+- .+..++..+. .+ .++..|+.+|+
T Consensus 195 ~~~~~~~~SpDG~~l~~~~~-~~~~~i~~~d~~~~~ 229 (582)
T 3o4h_A 195 GSFSSASISPGMKVTAGLET-AREARLVTVDPRDGS 229 (582)
T ss_dssp CEEEEEEECTTSCEEEEEEC-SSCEEEEEECTTTCC
T ss_pred CccccceECCCCCEEEEccC-CCeeEEEEEcCCCCc
Confidence 111222222 3345555553 45 78888988877
No 272
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=81.70 E-value=26 Score=41.08 Aligned_cols=151 Identities=11% Similarity=0.067 Sum_probs=79.9
Q ss_pred CCEEEEEeCCCEEEEEECcCCccceEEEcCccc-----ceeeeeeeeCCEEEEEEccCCeEEEEeCCC------CcEe--
Q 003800 53 RKRVVVSTEENVIASLDLRHGEIFWRHVLGIND-----VVDGIDIALGKYVITLSSDGSTLRAWNLPD------GQMV-- 119 (794)
Q Consensus 53 ~~~Vyv~t~~g~l~ALn~~tG~ivWR~~l~~~~-----~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~t------G~ll-- 119 (794)
+++|+++|. +-|..+|+++|+..--....... .+..+ ....++.+.+++.++.|..+|..+ +...
T Consensus 383 ~g~lWigt~-~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i-~~d~~g~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~ 460 (758)
T 3ott_A 383 EQQLWIATD-GSINRYDYATRQFIHYNIVDNTGTYNTNWTYYI-FEDTAGQLWISTCLGGIFVVDKHKLMQSTSGQYIAE 460 (758)
T ss_dssp TSCEEEEET-TEEEEEETTTTEEEEEEEECCC--CBSSSEEEE-EECTTSEEEEEESSSCEEEEEHHHHHHCCSSEEECS
T ss_pred CCCEEEEeC-CcHhhcCcCCCcEEEeecCCCcCCCCCceEEEE-EEcCCCCEEEEECCCceEEEccccccccCCcceecc
Confidence 677999995 57999999998643221111111 12223 234566777777555689998753 2221
Q ss_pred EEEeccCccccCCccccccccccccCCeEEE--EECCEEEEEECCCCcEEEEEeccCc-ceeeeeEEEEecCCEEEEEEe
Q 003800 120 WESFLRGSKHSKPLLLVPTNLKVDKDSLILV--SSKGCLHAVSSIDGEILWTRDFAAE-SVEVQQVIQLDESDQIYVVGY 196 (794)
Q Consensus 120 We~~l~~~~~s~~~~~~~~~~~~~~~~~V~V--~~~g~l~ald~~tG~~~W~~~~~~~-~~~~~~~v~s~~~~~vyv~~~ 196 (794)
+...... .++.. .+.. +..+.++.+.+ .+.+.|+++|..+++..--...... ...+..+. ....+.+++.+
T Consensus 461 ~~~~~~~-~l~~~-~i~~--i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i~-~d~~g~lWigt- 534 (758)
T 3ott_A 461 QNYSVHN-GLSGM-FINQ--IIPDNEGNVWVLLYNNKGIDKINPRTREVTKLFADELTGEKSPNYLL-CDEDGLLWVGF- 534 (758)
T ss_dssp EEECGGG-TCSCS-CEEE--EEECTTSCEEEEETTCSSEEEEETTTTEEEEECTTTSCGGGCEEEEE-ECTTSCEEEEE-
T ss_pred ccccccc-ccccc-eeee--EEEcCCCCEEEEccCCCCcEEEeCCCCceEEecCCCcCCCcccceEE-ECCCCCEEEEe-
Confidence 2222111 11010 1111 13444677887 4456699999998875532111111 11122222 34678899765
Q ss_pred cCCceeEEEEEEcCCCcee
Q 003800 197 AGSSQFHAYQINAMNGELL 215 (794)
Q Consensus 197 ~g~~~~~v~ald~~tG~~~ 215 (794)
.+ -+..+|+.+++..
T Consensus 535 ~~----Gl~~~~~~~~~~~ 549 (758)
T 3ott_A 535 HG----GVMRINPKDESQQ 549 (758)
T ss_dssp TT----EEEEECC--CCCC
T ss_pred cC----ceEEEecCCCceE
Confidence 33 3889999888654
No 273
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=81.19 E-value=63 Score=34.66 Aligned_cols=147 Identities=14% Similarity=0.089 Sum_probs=84.2
Q ss_pred cCCeEEEEeC-CCCcEeEEEeccCccccCCccccccccccccCCeEEEE-E-CCEEEEEECCCCcEEEEEeccCcc-eee
Q 003800 104 DGSTLRAWNL-PDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVS-S-KGCLHAVSSIDGEILWTRDFAAES-VEV 179 (794)
Q Consensus 104 ~g~~v~A~d~-~tG~llWe~~l~~~~~s~~~~~~~~~~~~~~~~~V~V~-~-~g~l~ald~~tG~~~W~~~~~~~~-~~~ 179 (794)
.++.|+.|+. .+|+.+=...+.++.. ....+. .+.+++..++. + |+++.--|.++|+.+.+....... ...
T Consensus 155 ~d~~V~~~~~s~dG~~~~s~~~~~~~v-~~l~fs----~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v 229 (356)
T 2w18_A 155 SDQQVEVMTFAEDGGGKENQFLMPPEE-TILTFA----EVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASV 229 (356)
T ss_dssp TTCEEEEEEECTTSCEEEEEEECCCSS-CEEEEE----EEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCC
T ss_pred CCCcEEEEEECCCCceeeeeccCCCce-eeEEee----ccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeee
Confidence 4689999999 6799887777766543 111111 12335566665 4 999999999999999988643211 111
Q ss_pred eeEEEEecCCEEEEEEe---------cCCceeEEEEEEcCCCceeeeeeeecccCccCceEE--EcCcEEEEEECCCCeE
Q 003800 180 QQVIQLDESDQIYVVGY---------AGSSQFHAYQINAMNGELLNHETAAFSGGFVGDVAL--VSSDTLVTLDTTRSIL 248 (794)
Q Consensus 180 ~~~v~s~~~~~vyv~~~---------~g~~~~~v~ald~~tG~~~w~~~v~~~~~~s~~~~~--vg~~~lv~~d~~~g~L 248 (794)
..+..+ .++.+.+... .|+....+...|+.+|+.+....+..|.+-.+..+- .++..+++.. .++.+
T Consensus 230 ~~vafS-pdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~sg~~lASgS-~DgTI 307 (356)
T 2w18_A 230 CHKAYS-EMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVKDHCAAAIL-TSGTI 307 (356)
T ss_dssp EEEEEE-ETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEETTEEEEEE-TTSCE
T ss_pred EEEEEC-CCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccCCCEEEEEc-CCCcE
Confidence 111111 2444443221 133334666689999988765544444332222210 1223556655 35889
Q ss_pred EEEEeecce
Q 003800 249 VTVSFKNRK 257 (794)
Q Consensus 249 ~v~~l~sg~ 257 (794)
++=|+.+|+
T Consensus 308 kIWDl~tGk 316 (356)
T 2w18_A 308 AIWDLLLGQ 316 (356)
T ss_dssp EEEETTTCS
T ss_pred EEEECCCCc
Confidence 999999988
No 274
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=80.25 E-value=12 Score=42.27 Aligned_cols=110 Identities=15% Similarity=0.118 Sum_probs=62.2
Q ss_pred CCEEEEEeCCCEEEEEECcCCccc-eEEEcCcccceeeee--eeeCC-EEEEEEccCCeEEEEeCCCCcEeEEEeccCc-
Q 003800 53 RKRVVVSTEENVIASLDLRHGEIF-WRHVLGINDVVDGID--IALGK-YVITLSSDGSTLRAWNLPDGQMVWESFLRGS- 127 (794)
Q Consensus 53 ~~~Vyv~t~~g~l~ALn~~tG~iv-WR~~l~~~~~i~~l~--~~~g~-~~V~Vs~~g~~v~A~d~~tG~llWe~~l~~~- 127 (794)
++.|++++.+|.|.-.|.++|+.. ..... ....+..+. ....+ .+++-++.+++|+.||..+|+..-.......
T Consensus 277 ~~~lasgs~DgtV~lWD~~~~~~~~~~~~~-H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~ 355 (524)
T 2j04_B 277 PTTVVCGFKNGFVAEFDLTDPEVPSFYDQV-HDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRG 355 (524)
T ss_dssp SSEEEEEETTSEEEEEETTBCSSCSEEEEC-SSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSC
T ss_pred CCeEEEEeCCCEEEEEECCCCCCceEEeec-ccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCccccccccccc
Confidence 457999999999999999998543 22222 122343331 11222 3444355578999999998876433222111
Q ss_pred -cccCCccccccccccccCCeEEEE--ECCEEEEEECCCCcEEEEEe
Q 003800 128 -KHSKPLLLVPTNLKVDKDSLILVS--SKGCLHAVSSIDGEILWTRD 171 (794)
Q Consensus 128 -~~s~~~~~~~~~~~~~~~~~V~V~--~~g~l~ald~~tG~~~W~~~ 171 (794)
.. ..+.+.+ ++..++. .++.+...|..+|....+..
T Consensus 356 ~~v-~~v~fsp-------~~~~l~s~~~d~tv~lwd~~~~~~~~~l~ 394 (524)
T 2j04_B 356 SNL-VPVVYCP-------QIYSYIYSDGASSLRAVPSRAAFAVHPLV 394 (524)
T ss_dssp CSC-CCEEEET-------TTTEEEEECSSSEEEEEETTCTTCCEEEE
T ss_pred Ccc-cceEeCC-------CcCeEEEeCCCCcEEEEECcccccceeee
Confidence 11 1111221 2333443 37788888888887655443
No 275
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=79.88 E-value=50 Score=38.62 Aligned_cols=74 Identities=12% Similarity=0.114 Sum_probs=44.3
Q ss_pred CCCEEEEEeC-----CCEEEEEECcCCccc-eEEEcCcccceeeeeeeeCCEEEEEEcc---CCeEEEEeCCCCcEeEEE
Q 003800 52 GRKRVVVSTE-----ENVIASLDLRHGEIF-WRHVLGINDVVDGIDIALGKYVITLSSD---GSTLRAWNLPDGQMVWES 122 (794)
Q Consensus 52 ~~~~Vyv~t~-----~g~l~ALn~~tG~iv-WR~~l~~~~~i~~l~~~~g~~~V~Vs~~---g~~v~A~d~~tG~llWe~ 122 (794)
+++.|++.+. .+.|+.+|+.+|... |+......+......-..++.+++.+.. ...|+.||..+|...|+.
T Consensus 278 DG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~ 357 (741)
T 1yr2_A 278 DGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFVDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDT 357 (741)
T ss_dssp TSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEE
T ss_pred CCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCccccEE
Confidence 3445665553 348999999998655 7776654432222111356666666542 357999998875335665
Q ss_pred ecc
Q 003800 123 FLR 125 (794)
Q Consensus 123 ~l~ 125 (794)
-+.
T Consensus 358 l~~ 360 (741)
T 1yr2_A 358 VVP 360 (741)
T ss_dssp EEC
T ss_pred Eec
Confidence 543
No 276
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=79.03 E-value=73 Score=34.12 Aligned_cols=197 Identities=12% Similarity=0.209 Sum_probs=101.4
Q ss_pred CCEEEEEeCCCEEEEEECcCCccceEEEcCccccee---eeeeeeCCE---EEEEEcc---CCeEEEE--eCCCCcEeEE
Q 003800 53 RKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVD---GIDIALGKY---VITLSSD---GSTLRAW--NLPDGQMVWE 121 (794)
Q Consensus 53 ~~~Vyv~t~~g~l~ALn~~tG~ivWR~~l~~~~~i~---~l~~~~g~~---~V~Vs~~---g~~v~A~--d~~tG~llWe 121 (794)
..+++....++-|+.+|. +|+++=+.......+++ ++ ..++. +++++.. .++|+.| |+.++. |+
T Consensus 40 ~s~ii~t~k~~gL~Vydl-~G~~l~~~~~g~~nnVD~r~~~--~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~--l~ 114 (355)
T 3amr_A 40 NSKLITTNKKSGLVVYSL-DGKMLHSYNTGKLNNVDIRYDF--PLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT--LQ 114 (355)
T ss_dssp GCEEEEEETTTEEEEEET-TSCEEEEECCSCEEEEEEEEEE--EETTEEEEEEEEEECSTTCCEEEEEEECTTTCC--EE
T ss_pred ccEEEEEcCCCCEEEEcC-CCcEEEEccCCCcccEEEeccc--ccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc--ee
Confidence 344444445689999999 99998664332212222 22 22333 4555543 3678777 767776 44
Q ss_pred EeccC--c---c--ccCCccccccccccccCC--eEEEE-ECCEEEEEEC---CCC----cEEEEEeccCcceeeeeEEE
Q 003800 122 SFLRG--S---K--HSKPLLLVPTNLKVDKDS--LILVS-SKGCLHAVSS---IDG----EILWTRDFAAESVEVQQVIQ 184 (794)
Q Consensus 122 ~~l~~--~---~--~s~~~~~~~~~~~~~~~~--~V~V~-~~g~l~ald~---~tG----~~~W~~~~~~~~~~~~~~v~ 184 (794)
.-... + . ....+++.- ... .+ .+||. .+|++.-++. .+| +++.++..+. .++.|+.
T Consensus 115 ~i~~~~~pv~t~~~~pyGlcly~---~~~-~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgs---q~Egcvv 187 (355)
T 3amr_A 115 SMTDPDHPIATAINEVYGFTLYH---SQK-TGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNS---QTEGMAA 187 (355)
T ss_dssp ECSCTTSCEECCCSSCCCEEEEE---CTT-TCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSS---CEEEEEE
T ss_pred eccccccCcCCCCCCeeEEEEEe---cCC-CCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCC---CcceEEE
Confidence 33211 1 0 001122210 111 23 35554 3677666443 333 5667777654 2566753
Q ss_pred EecCCEEEEEEecCCceeEEEEEEcC-----CCceeeeeeee-cccCccCceEEEc---CcEEEEEECCCCeEEEEEee-
Q 003800 185 LDESDQIYVVGYAGSSQFHAYQINAM-----NGELLNHETAA-FSGGFVGDVALVS---SDTLVTLDTTRSILVTVSFK- 254 (794)
Q Consensus 185 s~~~~~vyv~~~~g~~~~~v~ald~~-----tG~~~w~~~v~-~~~~~s~~~~~vg---~~~lv~~d~~~g~L~v~~l~- 254 (794)
-...+.+|+.--+- -+..+|+. +++.+...... +..++.+-.++.+ .+++++.+..++++++.+.+
T Consensus 188 Dd~~g~Lyv~eEd~----GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~ 263 (355)
T 3amr_A 188 DDEYGRLYIAEEDE----AIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQG 263 (355)
T ss_dssp ETTTTEEEEEETTT----EEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESST
T ss_pred cCCCCeEEEecccc----eEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCC
Confidence 23468899754332 48888855 34455333111 1123333223222 24777787667789999986
Q ss_pred cceeeeEEEeec
Q 003800 255 NRKIAFQETHLS 266 (794)
Q Consensus 255 sg~~~~~~~~l~ 266 (794)
+.+. +..|.+.
T Consensus 264 ~~~~-vg~f~Ig 274 (355)
T 3amr_A 264 KNKY-VADFRIT 274 (355)
T ss_dssp TCCE-EEEEEEC
T ss_pred CCcE-EEEEEec
Confidence 4442 4555543
No 277
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=78.31 E-value=76 Score=33.90 Aligned_cols=142 Identities=9% Similarity=-0.010 Sum_probs=66.3
Q ss_pred CEEEEEeCCCEEEEEECcCCccceEEEcCcccceeeeeeeeCCEEEEEEc-cCCeEEEEeCCCCcEeEEEeccCccccCC
Q 003800 54 KRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSS-DGSTLRAWNLPDGQMVWESFLRGSKHSKP 132 (794)
Q Consensus 54 ~~Vyv~t~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~-~g~~v~A~d~~tG~llWe~~l~~~~~s~~ 132 (794)
..++++. .+.|..+++.+++.. ..+.......++.....++.+|++. .++.|+.+++..+... ..+... +..+
T Consensus 88 ~~l~~~~-~~~I~~i~~~~~~~~--~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~--~~~~~~-~~~p 161 (386)
T 3v65_B 88 PVLLFAN-RIDIRQVLPHRSEYT--LLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVE--EVVSTG-LESP 161 (386)
T ss_dssp CEEEEEC-BSCEEEECTTSCCCE--EEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEE--EEECSS-CSCC
T ss_pred ceeEeec-CccceeeccCCCcEE--EEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcE--EEEeCC-CCCc
Confidence 3455554 456888888766542 2222222222332222345555553 4578999988765422 111111 1000
Q ss_pred ccccccccccc-cCCeEEEEE--CCEEEEEECCCCcEEEEEeccCcceeeeeEEEEecCCEEEEEEecCCceeEEEEEEc
Q 003800 133 LLLVPTNLKVD-KDSLILVSS--KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINA 209 (794)
Q Consensus 133 ~~~~~~~~~~~-~~~~V~V~~--~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~s~~~~~vyv~~~~g~~~~~v~ald~ 209 (794)
. .++++ .++.+|+.. .+++..++...+...-..... ...|..+.....++.+|+..... ..++..+++
T Consensus 162 ~-----glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~--l~~P~giavdp~~g~ly~td~~~--~~~I~r~~~ 232 (386)
T 3v65_B 162 G-----GLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQS--LEKPRAIALHPMEGTIYWTDWGN--TPRIEASSM 232 (386)
T ss_dssp C-----CEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSS--CSCEEEEEEETTTTEEEEEECSS--SCEEEEEET
T ss_pred c-----EEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCC--CCCCcEEEEEcCCCeEEEeccCC--CCEEEEEeC
Confidence 0 01222 145666653 567777776543322221111 11244443222467888754332 126777776
Q ss_pred C
Q 003800 210 M 210 (794)
Q Consensus 210 ~ 210 (794)
.
T Consensus 233 d 233 (386)
T 3v65_B 233 D 233 (386)
T ss_dssp T
T ss_pred C
Confidence 4
No 278
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=77.35 E-value=85 Score=33.96 Aligned_cols=110 Identities=12% Similarity=-0.000 Sum_probs=61.3
Q ss_pred CCEEEEEEccCCeEEEEeCCCCcEeEEEeccCccccCCccccccccccccCCeEEEE-ECCEEEEEECCCCcEEEEEecc
Q 003800 95 GKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVS-SKGCLHAVSSIDGEILWTRDFA 173 (794)
Q Consensus 95 g~~~V~Vs~~g~~v~A~d~~tG~llWe~~l~~~~~s~~~~~~~~~~~~~~~~~V~V~-~~g~l~ald~~tG~~~W~~~~~ 173 (794)
++..++++ .++.|+.||..+-...+......... .+ +.+ - ...+++. .+|.|..+|.++|+.. ...
T Consensus 96 d~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v-~~--i~~-----~-~p~~av~~~dG~L~v~dl~~~~~~---~~~ 162 (388)
T 1xip_A 96 HGDQVLVS-TRNALYSLDLEELSEFRTVTSFEKPV-FQ--LKN-----V-NNTLVILNSVNDLSALDLRTKSTK---QLA 162 (388)
T ss_dssp ETTEEEEE-ESSEEEEEESSSTTCEEEEEECSSCE-EE--EEE-----C-SSEEEEEETTSEEEEEETTTCCEE---EEE
T ss_pred CCCEEEEE-cCCcEEEEEchhhhccCccceeecce-ee--EEe-----c-CCCEEEEECCCCEEEEEccCCccc---ccc
Confidence 55677777 56799999988777666554333222 11 111 1 1234444 5999999999988753 111
Q ss_pred CcceeeeeEEEEecCCEEEEEEecCCceeEEEEEEcCCCceeeeeeeecccCc
Q 003800 174 AESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAFSGGF 226 (794)
Q Consensus 174 ~~~~~~~~~v~s~~~~~vyv~~~~g~~~~~v~ald~~tG~~~w~~~v~~~~~~ 226 (794)
.. .+++ ..++..++++..+| ++..+++.+++...+..+..|..+
T Consensus 163 -~~---Vs~v-~WSpkG~~vg~~dg----~i~~~~~~~~~~~~k~~I~~Pp~~ 206 (388)
T 1xip_A 163 -QN---VTSF-DVTNSQLAVLLKDR----SFQSFAWRNGEMEKQFEFSLPSEL 206 (388)
T ss_dssp -ES---EEEE-EECSSEEEEEETTS----CEEEEEEETTEEEEEEEECCCHHH
T ss_pred -CC---ceEE-EEcCCceEEEEcCC----cEEEEcCCCccccccceecCCccc
Confidence 11 1222 22334444444344 677788877775434445554433
No 279
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=76.95 E-value=72 Score=32.90 Aligned_cols=188 Identities=14% Similarity=0.040 Sum_probs=91.3
Q ss_pred CCEEEEEeC-CCEEEEEECcC---CccceEEEcCcc-cceeeeeeeeCCEEEEEE-ccCCeEEEEeCCCCcEeEEEeccC
Q 003800 53 RKRVVVSTE-ENVIASLDLRH---GEIFWRHVLGIN-DVVDGIDIALGKYVITLS-SDGSTLRAWNLPDGQMVWESFLRG 126 (794)
Q Consensus 53 ~~~Vyv~t~-~g~l~ALn~~t---G~ivWR~~l~~~-~~i~~l~~~~g~~~V~Vs-~~g~~v~A~d~~tG~llWe~~l~~ 126 (794)
+++||++.. .+.|..+|+.+ |.. -+..+... ....++.+.-.++.+|++ ...+.|..+|........-.. .
T Consensus 41 ~~~ly~~D~~~~~I~~~~~~g~~~~~~-~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~--~ 117 (316)
T 1ijq_A 41 SNRIYWSDLSQRMICSTQLDRAHGVSS-YDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR--E 117 (316)
T ss_dssp TTEEEEEETTTTEEEEEEC---------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEE--C
T ss_pred CCEEEEEECCCCcEEEEECCCCCCCcc-cEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEE--C
Confidence 678999886 48999999876 221 12222221 112344222123445554 345689999975332221111 1
Q ss_pred ccccCCccccccccccc-cCCeEEEEE--C-CEEEEEECCCCcEEEEEeccCcceeeeeEEEEecCCEEEEEEecCCcee
Q 003800 127 SKHSKPLLLVPTNLKVD-KDSLILVSS--K-GCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQF 202 (794)
Q Consensus 127 ~~~s~~~~~~~~~~~~~-~~~~V~V~~--~-g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~s~~~~~vyv~~~~g~~~~ 202 (794)
.+..+ . .++++ .++.+|+.. . +.|++++.. |...=..-...-. .|..+.....++.+|+.....+
T Consensus 118 -~~~~P-~----~iavdp~~g~ly~~d~~~~~~I~~~~~d-G~~~~~~~~~~~~-~P~gla~d~~~~~lY~~D~~~~--- 186 (316)
T 1ijq_A 118 -NGSKP-R----AIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLVTENIQ-WPNGITLDLLSGRLYWVDSKLH--- 186 (316)
T ss_dssp -TTCCE-E----EEEEETTTTEEEEEECSSSCEEEEEETT-SCCEEEEECSSCS-CEEEEEEETTTTEEEEEETTTT---
T ss_pred -CCCCc-c----eEEeCCCCCEEEEEccCCCCeEEEEcCC-CCCeEEEEECCCC-CceEEEEeccCCEEEEEECCCC---
Confidence 11011 0 11333 256677763 2 688888863 4322111111111 1434432235788998654433
Q ss_pred EEEEEEcCCCceeeeeeeecccCccC--ceEEEcCcEEEEEECCCCeEEEEEeecce
Q 003800 203 HAYQINAMNGELLNHETAAFSGGFVG--DVALVSSDTLVTLDTTRSILVTVSFKNRK 257 (794)
Q Consensus 203 ~v~ald~~tG~~~w~~~v~~~~~~s~--~~~~vg~~~lv~~d~~~g~L~v~~l~sg~ 257 (794)
++..+|.. |..+... +..+..+.. .+. +.++.++|+|..++.+..++..+|+
T Consensus 187 ~I~~~d~d-g~~~~~~-~~~~~~~~~P~gia-v~~~~ly~~d~~~~~V~~~~~~~g~ 240 (316)
T 1ijq_A 187 SISSIDVN-GGNRKTI-LEDEKRLAHPFSLA-VFEDKVFWTDIINEAIFSANRLTGS 240 (316)
T ss_dssp EEEEEETT-SCSCEEE-EECTTTTSSEEEEE-EETTEEEEEETTTTEEEEEETTTCC
T ss_pred eEEEEecC-CCceEEE-eecCCccCCcEEEE-EECCEEEEEECCCCeEEEEeCCCCc
Confidence 78888876 4322111 111111211 122 2446777888877888888876665
No 280
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=76.78 E-value=1.3e+02 Score=35.80 Aligned_cols=183 Identities=11% Similarity=0.068 Sum_probs=76.8
Q ss_pred EEEEEeCCCEEEEEECcCCccceEEEcCcccceeeeeeeeCCEEEEEEc-cCCeEEEEeCCCCcE--eEEEeccCccccC
Q 003800 55 RVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSS-DGSTLRAWNLPDGQM--VWESFLRGSKHSK 131 (794)
Q Consensus 55 ~Vyv~t~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~-~g~~v~A~d~~tG~l--lWe~~l~~~~~s~ 131 (794)
.++++.. ..|..++...++. ...........++.....++.||++. ..+.|+.+++..... .++..+... + .
T Consensus 397 ~Ll~an~-~~Ir~i~l~~~~~--~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~-l-~ 471 (791)
T 3m0c_C 397 YLFFTNR-HEVRKMTLDRSEY--TSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD-I-Q 471 (791)
T ss_dssp EEEEECB-SSEEEECTTSCCC--EEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSS-C-S
T ss_pred ccccccc-cceeEeeccCCcc--eeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecC-C-C
Confidence 3555544 4467777765543 33232222222332222345566554 346788888753211 122222211 1 0
Q ss_pred Ccccccccccccc-CCeEEEEE--CCEEEEEECCCCcEEEEEeccCcceeeeeEEEEecCCEEEEEEecCCceeEEEEEE
Q 003800 132 PLLLVPTNLKVDK-DSLILVSS--KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQIN 208 (794)
Q Consensus 132 ~~~~~~~~~~~~~-~~~V~V~~--~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~s~~~~~vyv~~~~g~~~~~v~ald 208 (794)
.+. .++++- ++.||+.. .++|.+++.......--.... ...|..+......+.+|+... |. .-++..++
T Consensus 472 ~P~----GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~--l~~P~gIaVDp~~g~LYwtD~-g~-~~~I~~~~ 543 (791)
T 3m0c_C 472 APD----GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREN--GSKPRAIVVDPVHGFMYWTDW-GT-PAKIKKGG 543 (791)
T ss_dssp CCC----EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECT--TCCEEEEEEETTTTEEEEEEC-SS-SCEEEEEE
T ss_pred Ccc----eeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCC--CCCcceEEEecCCCCEEEecC-CC-CCeEEEEe
Confidence 000 112221 34666663 667877776543322221111 112444432224578887542 21 11566666
Q ss_pred cCCCceeeeeeeecccCccCc--eEEE-cCcEEEEEECCCCeEEEEEee
Q 003800 209 AMNGELLNHETAAFSGGFVGD--VALV-SSDTLVTLDTTRSILVTVSFK 254 (794)
Q Consensus 209 ~~tG~~~w~~~v~~~~~~s~~--~~~v-g~~~lv~~d~~~g~L~v~~l~ 254 (794)
+. |..+-.. ...++... +.+- .++.|+|+|...+.+.++++.
T Consensus 544 ~d-G~~~~~l---v~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~d 588 (791)
T 3m0c_C 544 LN-GVDIYSL---VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN 588 (791)
T ss_dssp TT-SCCEEEE---ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred cC-CCceEEE---EeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecC
Confidence 64 4332111 11122111 1111 234556666655566666654
No 281
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=76.75 E-value=49 Score=38.29 Aligned_cols=143 Identities=14% Similarity=0.044 Sum_probs=67.5
Q ss_pred CEEEEEECcCCccc-eEEEcCcccceeeeee-eeCCEEEEEEccC------------CeEEEEeCCCCc----EeEEEec
Q 003800 63 NVIASLDLRHGEIF-WRHVLGINDVVDGIDI-ALGKYVITLSSDG------------STLRAWNLPDGQ----MVWESFL 124 (794)
Q Consensus 63 g~l~ALn~~tG~iv-WR~~l~~~~~i~~l~~-~~g~~~V~Vs~~g------------~~v~A~d~~tG~----llWe~~l 124 (794)
..|.-+|.++|+.+ =. .++.. ....+.- ..|+.+++.+.+. ..|+.|+..+|. ++++..-
T Consensus 147 ~~i~v~dl~tg~~~~~~-~~~~~-~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~ 224 (695)
T 2bkl_A 147 AVLHVIDVDSGEWSKVD-VIEGG-KYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTG 224 (695)
T ss_dssp CEEEEEETTTCCBCSSC-CBSCC-TTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCC
T ss_pred EEEEEEECCCCCCcCCc-ccCcc-cccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCC
Confidence 57999999999864 10 11111 0011111 2455566654422 239999998886 4443221
Q ss_pred cCccccCCccccccccccccCCeEEEE-ECC----EEEEEECCCCcEEEEEeccCcceeeeeEEEEecCCEEEEEEecCC
Q 003800 125 RGSKHSKPLLLVPTNLKVDKDSLILVS-SKG----CLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGS 199 (794)
Q Consensus 125 ~~~~~s~~~~~~~~~~~~~~~~~V~V~-~~g----~l~ald~~tG~~~W~~~~~~~~~~~~~~v~s~~~~~vyv~~~~g~ 199 (794)
..... ..+.. ..+ ++.+++. .++ .++.++..+|+.+--....... ...+ ...++ +|+.+..+.
T Consensus 225 ~~~~~-~~~~~-----SpD-G~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~---~~~~-~~~g~-l~~~s~~~~ 292 (695)
T 2bkl_A 225 DPTTF-LQSDL-----SRD-GKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAK---YEVH-AWKDR-FYVLTDEGA 292 (695)
T ss_dssp CTTCE-EEEEE-----CTT-SCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCC---EEEE-EETTE-EEEEECTTC
T ss_pred CCEEE-EEEEE-----CCC-CCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCce---EEEE-ecCCc-EEEEECCCC
Confidence 11100 00111 122 2334333 333 6777766666433222211111 1122 12344 666554333
Q ss_pred ceeEEEEEEcCCCce-eeeee
Q 003800 200 SQFHAYQINAMNGEL-LNHET 219 (794)
Q Consensus 200 ~~~~v~ald~~tG~~-~w~~~ 219 (794)
...+++.+|+.+|+. .|+.-
T Consensus 293 ~~~~l~~~d~~~~~~~~~~~l 313 (695)
T 2bkl_A 293 PRQRVFEVDPAKPARASWKEI 313 (695)
T ss_dssp TTCEEEEEBTTBCSGGGCEEE
T ss_pred CCCEEEEEeCCCCCccCCeEE
Confidence 345899999988864 25543
No 282
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=76.17 E-value=73 Score=32.61 Aligned_cols=65 Identities=8% Similarity=0.151 Sum_probs=34.3
Q ss_pred CCCEEEEEeCCCEEEEEECcCCcc---ceE--EEcCc-ccceeeeeeeeCCEEEEEEccCCeEEEEeCCCC
Q 003800 52 GRKRVVVSTEENVIASLDLRHGEI---FWR--HVLGI-NDVVDGIDIALGKYVITLSSDGSTLRAWNLPDG 116 (794)
Q Consensus 52 ~~~~Vyv~t~~g~l~ALn~~tG~i---vWR--~~l~~-~~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~tG 116 (794)
++..+++++.++.|.-.|.+++.. .++ ..+.. ...+..+.....+..++.++.++.|+.||..++
T Consensus 69 ~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~ 139 (330)
T 2hes_X 69 HTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDES 139 (330)
T ss_dssp TSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTT
T ss_pred CCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCC
Confidence 456788888899988888754321 122 12221 123333322223444444555679999999544
No 283
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=76.13 E-value=40 Score=41.17 Aligned_cols=104 Identities=12% Similarity=0.069 Sum_probs=57.4
Q ss_pred CCEEEEEeCCCEEE-EEECcCCccceEEEcCcccceeeeeeeeCCEEEEEEccCCeEEEEeCCCCcEeEEEeccCccccC
Q 003800 53 RKRVVVSTEENVIA-SLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSK 131 (794)
Q Consensus 53 ~~~Vyv~t~~g~l~-ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~l~~~~~s~ 131 (794)
++.++++++++.+. .+|..+|++. +.......+..+...-++..++.++.++.++.||..+|++.-......... .
T Consensus 348 g~~l~~~s~~~~l~~~~d~~~~~~~--~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v-~ 424 (1045)
T 1k32_A 348 KVAFIHGTREGDFLGIYDYRTGKAE--KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMI-T 424 (1045)
T ss_dssp EEEEEEEETTEEEEEEEETTTCCEE--ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCC-C
T ss_pred CCeEEEEECCCceEEEEECCCCCce--EecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCc-c
Confidence 34577777788888 8888877642 222221223233222333444445555799999999999876553332221 1
Q ss_pred CccccccccccccCCeEEEE-EC----------CEEEEEECCCCc
Q 003800 132 PLLLVPTNLKVDKDSLILVS-SK----------GCLHAVSSIDGE 165 (794)
Q Consensus 132 ~~~~~~~~~~~~~~~~V~V~-~~----------g~l~ald~~tG~ 165 (794)
.+.+.+ + ++.+++. .+ +.++..|..+|+
T Consensus 425 ~~~~Sp-----D-G~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~ 463 (1045)
T 1k32_A 425 DFTISD-----N-SRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK 463 (1045)
T ss_dssp CEEECT-----T-SCEEEEEEEECSSTTCSCCEEEEEEEETTTTE
T ss_pred ceEECC-----C-CCeEEEEecCccccccCCCCCeEEEEECCCCc
Confidence 121221 2 2334333 23 378888888876
No 284
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=75.68 E-value=95 Score=33.65 Aligned_cols=112 Identities=11% Similarity=0.030 Sum_probs=62.6
Q ss_pred CCCEEEE----EeCCCEEEEEECcCC--------ccceEEEcCc--ccceeeeeee-eCCEEEEEEccCCeEEEEeCCCC
Q 003800 52 GRKRVVV----STEENVIASLDLRHG--------EIFWRHVLGI--NDVVDGIDIA-LGKYVITLSSDGSTLRAWNLPDG 116 (794)
Q Consensus 52 ~~~~Vyv----~t~~g~l~ALn~~tG--------~ivWR~~l~~--~~~i~~l~~~-~g~~~V~Vs~~g~~v~A~d~~tG 116 (794)
+++.+++ ++.++.|.-.|.+++ +.+.....-. ...+..+... .++..++.++.++.|+.||..+|
T Consensus 103 dg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~ 182 (434)
T 2oit_A 103 DNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTET 182 (434)
T ss_dssp TSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSS
T ss_pred CCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCC
Confidence 3555663 456889999998877 4444443322 2234443222 22345554555679999999999
Q ss_pred cEeEEEeccCccccCCccccccccccccCCeEEEEE-CCEEEEEECCCCcEEEEEe
Q 003800 117 QMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSS-KGCLHAVSSIDGEILWTRD 171 (794)
Q Consensus 117 ~llWe~~l~~~~~s~~~~~~~~~~~~~~~~~V~V~~-~g~l~ald~~tG~~~W~~~ 171 (794)
............. ..+..- .+ ++.+++.+ +|.+..+|.. |+..=+..
T Consensus 183 ~~~~~~~~~~~~v-~~v~ws-----pd-g~~lasgs~dg~v~iwd~~-~~~~~~~~ 230 (434)
T 2oit_A 183 VKVCATLPSTVAV-TSVCWS-----PK-GKQLAVGKQNGTVVQYLPT-LQEKKVIP 230 (434)
T ss_dssp EEEEEEECGGGCE-EEEEEC-----TT-SSCEEEEETTSCEEEECTT-CCEEEEEC
T ss_pred cceeeccCCCCce-eEEEEc-----CC-CCEEEEEcCCCcEEEEccC-Cccccccc
Confidence 7765544322211 111111 12 34455554 8899999987 66654443
No 285
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=75.02 E-value=1e+02 Score=37.56 Aligned_cols=146 Identities=8% Similarity=-0.055 Sum_probs=75.4
Q ss_pred CCEEEEEeCCCEEEEEECcCCccceEEEcCccc-ceeeeeeeeCCEEEEEEccCCeEE-EEeCCCCcEeEEEeccCcccc
Q 003800 53 RKRVVVSTEENVIASLDLRHGEIFWRHVLGIND-VVDGIDIALGKYVITLSSDGSTLR-AWNLPDGQMVWESFLRGSKHS 130 (794)
Q Consensus 53 ~~~Vyv~t~~g~l~ALn~~tG~ivWR~~l~~~~-~i~~l~~~~g~~~V~Vs~~g~~v~-A~d~~tG~llWe~~l~~~~~s 130 (794)
+..+++++ .+.|..+|..+|+.. +...... .+..+....++.+++.+. ...++ .||..+|++. .+.....
T Consensus 308 G~~la~~~-~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~sdg~~l~~~s~-~~~l~~~~d~~~~~~~---~l~~~~~- 379 (1045)
T 1k32_A 308 GDLIAFVS-RGQAFIQDVSGTYVL--KVPEPLRIRYVRRGGDTKVAFIHGTR-EGDFLGIYDYRTGKAE---KFEENLG- 379 (1045)
T ss_dssp GGCEEEEE-TTEEEEECTTSSBEE--ECSCCSCEEEEEECSSSEEEEEEEET-TEEEEEEEETTTCCEE---ECCCCCC-
T ss_pred CCEEEEEE-cCEEEEEcCCCCceE--EccCCCcceEEeeeEcCCCeEEEEEC-CCceEEEEECCCCCce---EecCCcc-
Confidence 44455555 778888998888642 2222222 222222232233444444 56888 8999888653 2221111
Q ss_pred CCccccccccccccCC-eEEEE-ECCEEEEEECCCCcEEEEEeccCcceeeeeEEEEecCCEEEEEEecC------Ccee
Q 003800 131 KPLLLVPTNLKVDKDS-LILVS-SKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAG------SSQF 202 (794)
Q Consensus 131 ~~~~~~~~~~~~~~~~-~V~V~-~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~s~~~~~vyv~~~~g------~~~~ 202 (794)
....+ ....++ .+++. .++.++.+|..+|+..-......... ..+..+.++..+...+..+ ....
T Consensus 380 -~~~~~----~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v--~~~~~SpDG~~la~~~~~~~~~~~~~~~~ 452 (1045)
T 1k32_A 380 -NVFAM----GVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMI--TDFTISDNSRFIAYGFPLKHGETDGYVMQ 452 (1045)
T ss_dssp -SEEEE----EECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCC--CCEEECTTSCEEEEEEEECSSTTCSCCEE
T ss_pred -ceeee----EECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCc--cceEECCCCCeEEEEecCccccccCCCCC
Confidence 11111 111233 44444 37899999999998876653322211 1222233344444444332 2234
Q ss_pred EEEEEEcCCCc
Q 003800 203 HAYQINAMNGE 213 (794)
Q Consensus 203 ~v~ald~~tG~ 213 (794)
.+..+|+.+|+
T Consensus 453 ~i~l~d~~~g~ 463 (1045)
T 1k32_A 453 AIHVYDMEGRK 463 (1045)
T ss_dssp EEEEEETTTTE
T ss_pred eEEEEECCCCc
Confidence 78888999887
No 286
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=74.52 E-value=1.5e+02 Score=35.32 Aligned_cols=190 Identities=14% Similarity=0.052 Sum_probs=91.2
Q ss_pred CCEEEEEeC-CCEEEEEECcCCcc--ceEEEcCcc-cceeeeeeeeCCEEEEEEc-cCCeEEEEeCCCCcEeEEEeccCc
Q 003800 53 RKRVVVSTE-ENVIASLDLRHGEI--FWRHVLGIN-DVVDGIDIALGKYVITLSS-DGSTLRAWNLPDGQMVWESFLRGS 127 (794)
Q Consensus 53 ~~~Vyv~t~-~g~l~ALn~~tG~i--vWR~~l~~~-~~i~~l~~~~g~~~V~Vs~-~g~~v~A~d~~tG~llWe~~l~~~ 127 (794)
.++||++.. .+.|..+++..... .++..+... ....++.+.-.++.||++. ..++|+..++. |+.+=.. +. .
T Consensus 435 ~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ld-G~~~~~l-~~-~ 511 (791)
T 3m0c_C 435 SNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK-GVKRKTL-FR-E 511 (791)
T ss_dssp TTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT-SSSEEEE-EE-C
T ss_pred CCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCC-CCeEEEE-Ee-C
Confidence 567888775 46787777654221 233333322 1223442221233455543 35688888875 5432111 11 1
Q ss_pred cccCCcccccccccccc-CCeEEEEE---CCEEEEEECCCCcEEEEEeccCcceeeeeEEEEecCCEEEEEEecCCceeE
Q 003800 128 KHSKPLLLVPTNLKVDK-DSLILVSS---KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFH 203 (794)
Q Consensus 128 ~~s~~~~~~~~~~~~~~-~~~V~V~~---~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~s~~~~~vyv~~~~g~~~~~ 203 (794)
.+..+. .++++. .+.+|+.. .++|.+++.......--... .-. .|..+......+.||++..... +
T Consensus 512 ~l~~P~-----gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~-~l~-~P~GLavD~~~~~LYwaD~~~~---~ 581 (791)
T 3m0c_C 512 NGSKPR-----AIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTE-NIQ-WPNGITLDLLSGRLYWVDSKLH---S 581 (791)
T ss_dssp TTCCEE-----EEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECS-SCS-CEEEEEEETTTTEEEEEETTTT---E
T ss_pred CCCCcc-----eEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeC-CCC-CceEEEEecCCCeEEEEeCCCC---c
Confidence 110110 112332 35666653 25677777543222221111 101 1444432235788998653332 6
Q ss_pred EEEEEcCCCceeeeeeeecccCccCce-EEEcCcEEEEEECCCCeEEEEEeecce
Q 003800 204 AYQINAMNGELLNHETAAFSGGFVGDV-ALVSSDTLVTLDTTRSILVTVSFKNRK 257 (794)
Q Consensus 204 v~ald~~tG~~~w~~~v~~~~~~s~~~-~~vg~~~lv~~d~~~g~L~v~~l~sg~ 257 (794)
|..+|+ +|..+.... .....+.... +-+.++.++|+|..++.+..++..+|+
T Consensus 582 I~~~d~-dG~~~~~v~-~~~~~l~~P~glav~~~~lYwtD~~~~~I~~~dk~tG~ 634 (791)
T 3m0c_C 582 ISSIDV-NGGNRKTIL-EDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGS 634 (791)
T ss_dssp EEEEET-TSCSCEEEE-ECTTTTSSEEEEEEETTEEEEEETTTTEEEEEETTTCC
T ss_pred EEEEec-CCCceEEEe-cCCCccCCCCEEEEeCCEEEEEECCCCEEEEEeCCCCc
Confidence 777887 454443331 1112222211 113456788999988999999887776
No 287
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=73.73 E-value=66 Score=37.06 Aligned_cols=68 Identities=13% Similarity=0.169 Sum_probs=43.2
Q ss_pred CCCEEEEEeC--CCEEEEEECcCCccceEEEcCcccc-eeeeeeee-CCEEEEEEc-cC-----CeEEEEeCCCCcEeEE
Q 003800 52 GRKRVVVSTE--ENVIASLDLRHGEIFWRHVLGINDV-VDGIDIAL-GKYVITLSS-DG-----STLRAWNLPDGQMVWE 121 (794)
Q Consensus 52 ~~~~Vyv~t~--~g~l~ALn~~tG~ivWR~~l~~~~~-i~~l~~~~-g~~~V~Vs~-~g-----~~v~A~d~~tG~llWe 121 (794)
.+++||+... .+.+..+|++++ .|+..-+-... ........ ++.++++|| .+ ..+..||+.+++ |+
T Consensus 252 ~~g~lyv~GG~~~~~v~~yd~~t~--~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~--W~ 327 (656)
T 1k3i_A 252 GNGQIVVTGGNDAKKTSLYDSSSD--SWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT--WT 327 (656)
T ss_dssp TTSCEEEECSSSTTCEEEEEGGGT--EEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE--EE
T ss_pred CCCCEEEeCCCCCCceEEecCcCC--ceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCc--ce
Confidence 3677888775 457999999988 59875432211 11111234 555666676 22 469999999876 88
Q ss_pred Ee
Q 003800 122 SF 123 (794)
Q Consensus 122 ~~ 123 (794)
..
T Consensus 328 ~~ 329 (656)
T 1k3i_A 328 SL 329 (656)
T ss_dssp EE
T ss_pred eC
Confidence 74
No 288
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=73.70 E-value=87 Score=33.04 Aligned_cols=69 Identities=4% Similarity=-0.040 Sum_probs=40.5
Q ss_pred CEEEEEeCCCEEEEEECcCCccceEEEcCcccceeeeeee-eCCEEEEEEccCCeEEEEeCCCCcEeEEEe
Q 003800 54 KRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIA-LGKYVITLSSDGSTLRAWNLPDGQMVWESF 123 (794)
Q Consensus 54 ~~Vyv~t~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~-~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~ 123 (794)
..|..+++++.|.--|.+++...-...-... .+..+... .+...++.++.++.++.||..+|+...+..
T Consensus 157 ~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~-~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~ 226 (393)
T 4gq1_A 157 QVIASVGDDCTLIIWRLTDEGPILAGYPLSS-PGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENS 226 (393)
T ss_dssp EEEEEEETTSEEEEEEEETTEEEEEEEECSS-CEEEEEEETTEEEEEEEEETTSEEEEEETTCCC------
T ss_pred CEEEEEECCCeEEEEECCCCceeeeecCCCC-CcEEEEECCCCCceEEecCCCCEEEEEECCCCccccccc
Confidence 3466788899999999988876544322211 22222112 233355556667899999999998876654
No 289
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=73.49 E-value=95 Score=32.66 Aligned_cols=61 Identities=7% Similarity=0.070 Sum_probs=35.5
Q ss_pred CCEEEEEeCCCEEEEEECcCCccceEEE--cC---c-ccceeeeeeeeC---CEEEEEEcc-C-----CeEEEEeCCCCc
Q 003800 53 RKRVVVSTEENVIASLDLRHGEIFWRHV--LG---I-NDVVDGIDIALG---KYVITLSSD-G-----STLRAWNLPDGQ 117 (794)
Q Consensus 53 ~~~Vyv~t~~g~l~ALn~~tG~ivWR~~--l~---~-~~~i~~l~~~~g---~~~V~Vs~~-g-----~~v~A~d~~tG~ 117 (794)
++++||+...|.|..++ +|+. +.. ++ . .....++....+ ++.+||+.. . +.|..++..+++
T Consensus 41 dG~l~V~e~~g~I~~i~--~g~~--~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~ 116 (352)
T 2ism_A 41 DGGMLIAERPGRIRLFR--EGRL--STYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGER 116 (352)
T ss_dssp TSCEEEEETTTEEEEEE--TTEE--EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEECSSC
T ss_pred CCeEEEEeCCCeEEEEE--CCCc--cEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEEeCCCC
Confidence 67899999999999999 6752 211 11 1 111223322222 357777542 1 578889887653
No 290
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=73.33 E-value=53 Score=37.81 Aligned_cols=65 Identities=14% Similarity=0.143 Sum_probs=41.9
Q ss_pred cCCCEEEEEeC---------CCEEEEEECcCCccceEEEcCcccceeeeee-eeCCEEEEEEccCCeEEEEeCCCCcEe
Q 003800 51 TGRKRVVVSTE---------ENVIASLDLRHGEIFWRHVLGINDVVDGIDI-ALGKYVITLSSDGSTLRAWNLPDGQMV 119 (794)
Q Consensus 51 ~~~~~Vyv~t~---------~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~-~~g~~~V~Vs~~g~~v~A~d~~tG~ll 119 (794)
++++.|++++. ++.|...|.++|+.+....+... +..... ..|+.+++++ ++.|+.||..+|+..
T Consensus 69 pDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l~~~--~~~~~~SPDG~~la~~~--~~~i~~~~~~~g~~~ 143 (719)
T 1z68_A 69 PDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNELPRP--IQYLCWSPVGSKLAYVY--QNNIYLKQRPGDPPF 143 (719)
T ss_dssp TTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCSS--BCCEEECSSTTCEEEEE--TTEEEEESSTTSCCE
T ss_pred CCCCeEEEEecCceeEEeecceEEEEEECCCCccccceecCcc--cccceECCCCCEEEEEE--CCeEEEEeCCCCCcE
Confidence 45666777765 58899999999987532334322 222211 2455566644 358999999999864
No 291
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=73.26 E-value=91 Score=32.36 Aligned_cols=187 Identities=12% Similarity=0.027 Sum_probs=90.8
Q ss_pred CCEEEEEeC-CCEEEEEECcCCcc-ceEEEcCcccceeeeeeeeCCEEEEEEc-cCCeEEEEeCCCCcEeEEEeccCccc
Q 003800 53 RKRVVVSTE-ENVIASLDLRHGEI-FWRHVLGINDVVDGIDIALGKYVITLSS-DGSTLRAWNLPDGQMVWESFLRGSKH 129 (794)
Q Consensus 53 ~~~Vyv~t~-~g~l~ALn~~tG~i-vWR~~l~~~~~i~~l~~~~g~~~V~Vs~-~g~~v~A~d~~tG~llWe~~l~~~~~ 129 (794)
+++||++.- .+.|..+++.++.. .+-.... -....++.+.-.++.+|++. ..+.+..+++. |...=.. .. ..+
T Consensus 46 ~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~-l~~p~glavd~~~g~ly~~d~~~~~I~~~~~d-G~~~~~l-~~-~~~ 121 (318)
T 3sov_A 46 HGLIYWSDVSEEAIKRTEFNKTESVQNVVVSG-LLSPDGLACDWLGEKLYWTDSETNRIEVSNLD-GSLRKVL-FW-QEL 121 (318)
T ss_dssp GTEEEEEETTTTEEEEEETTSSSCCCEEEEEC-CSCCCEEEEETTTTEEEEEETTTTEEEEEETT-SCSCEEE-EC-SSC
T ss_pred CCEEEEEECCCCcEEEEEccCCCceEEEEcCC-CCCccEEEEEcCCCeEEEEECCCCEEEEEECC-CCcEEEE-Ee-CCC
Confidence 578888875 57888898877642 2211111 01122442221234455543 34688888874 4322111 11 111
Q ss_pred cCCcccccccccccc-CCeEEEEE---CCEEEEEECCCCcEEEEEeccCcceeeeeEEEEecCCEEEEEEecCCceeEEE
Q 003800 130 SKPLLLVPTNLKVDK-DSLILVSS---KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAY 205 (794)
Q Consensus 130 s~~~~~~~~~~~~~~-~~~V~V~~---~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~s~~~~~vyv~~~~g~~~~~v~ 205 (794)
..+.. ++++. .+.+|+.. .+.+++++.. |..+-..-... -..|..+.....++.+|+.....+ ++.
T Consensus 122 ~~P~g-----iavdp~~g~ly~td~~~~~~I~r~~~d-G~~~~~~~~~~-l~~Pnglavd~~~~~lY~aD~~~~---~I~ 191 (318)
T 3sov_A 122 DQPRA-----IALDPSSGFMYWTDWGEVPKIERAGMD-GSSRFIIINSE-IYWPNGLTLDYEEQKLYWADAKLN---FIH 191 (318)
T ss_dssp SSEEE-----EEEEGGGTEEEEEECSSSCEEEEEETT-SCSCEEEECSS-CSCEEEEEEETTTTEEEEEETTTT---EEE
T ss_pred CCccE-----EEEeCCCCEEEEEecCCCCEEEEEEcC-CCCeEEEEECC-CCCccEEEEeccCCEEEEEECCCC---EEE
Confidence 01110 12221 35666653 4678888754 43221111111 111334432235788998654333 788
Q ss_pred EEEcCCCceeeeeeeecccCccCc-eEEEcCcEEEEEECCCCeEEEEEeecce
Q 003800 206 QINAMNGELLNHETAAFSGGFVGD-VALVSSDTLVTLDTTRSILVTVSFKNRK 257 (794)
Q Consensus 206 ald~~tG~~~w~~~v~~~~~~s~~-~~~vg~~~lv~~d~~~g~L~v~~l~sg~ 257 (794)
.+|.. |...... . ...+..+ -+-+.++.++|+|..++.+...+..+|+
T Consensus 192 ~~d~d-G~~~~~~--~-~~~~~~P~glav~~~~lywtd~~~~~V~~~~~~~G~ 240 (318)
T 3sov_A 192 KSNLD-GTNRQAV--V-KGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGE 240 (318)
T ss_dssp EEETT-SCSCEEE--E-CSCCSCEEEEEEETTEEEEEETTTTEEEEEETTTCC
T ss_pred EEcCC-CCceEEE--e-cCCCCCceEEEEeCCEEEEEecCCCeEEEEECCCCC
Confidence 88875 4222111 1 1112111 1112455677888888888888887776
No 292
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=73.26 E-value=1.2e+02 Score=33.69 Aligned_cols=191 Identities=10% Similarity=-0.008 Sum_probs=103.4
Q ss_pred CCCEEEEEeC-CCEEEEEECcCC--ccceEEEcCcc------c--ceeeeeeeeCCEEEEEEccC-------CeEEEEeC
Q 003800 52 GRKRVVVSTE-ENVIASLDLRHG--EIFWRHVLGIN------D--VVDGIDIALGKYVITLSSDG-------STLRAWNL 113 (794)
Q Consensus 52 ~~~~Vyv~t~-~g~l~ALn~~tG--~ivWR~~l~~~------~--~i~~l~~~~g~~~V~Vs~~g-------~~v~A~d~ 113 (794)
+++.+|+... ++.|+.+|.++- ++.=....+.. + ...+++. ..++ ++|+..| +.+..+|.
T Consensus 94 ~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~-~pdG-i~Vs~~g~~~g~~~g~v~vlD~ 171 (462)
T 2ece_A 94 ERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHC-GPDA-IYISALGNEEGEGPGGILMLDH 171 (462)
T ss_dssp CSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEE-CSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred cCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeE-CCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence 3666888776 689999998744 22222223210 0 0011211 2233 5554322 58999999
Q ss_pred CCCcEeEEEeccCcc--ccCCccccccccccccCCeEEEEE---------------------CCEEEEEECCCCcEEEEE
Q 003800 114 PDGQMVWESFLRGSK--HSKPLLLVPTNLKVDKDSLILVSS---------------------KGCLHAVSSIDGEILWTR 170 (794)
Q Consensus 114 ~tG~llWe~~l~~~~--~s~~~~~~~~~~~~~~~~~V~V~~---------------------~g~l~ald~~tG~~~W~~ 170 (794)
+|++++=++...... ..-+.+.-+ ++.+++.+ +.+|+.+|..+|+++-+.
T Consensus 172 ~T~~v~~~~~~~~~~~~~~Yd~~~~p-------~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI 244 (462)
T 2ece_A 172 YSFEPLGKWEIDRGDQYLAYDFWWNL-------PNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSL 244 (462)
T ss_dssp TTCCEEEECCSBCTTCCCCCCEEEET-------TTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEE
T ss_pred CCCeEEEEEccCCCCccccceEEECC-------CCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEE
Confidence 999998776654221 111122222 34455543 589999999999888888
Q ss_pred eccCcceeeeeEEE--EecCCEEEEEEe-----cCCceeEEEEEEcCCCceeeeeeeeccc------------------C
Q 003800 171 DFAAESVEVQQVIQ--LDESDQIYVVGY-----AGSSQFHAYQINAMNGELLNHETAAFSG------------------G 225 (794)
Q Consensus 171 ~~~~~~~~~~~~v~--s~~~~~vyv~~~-----~g~~~~~v~ald~~tG~~~w~~~v~~~~------------------~ 225 (794)
+.+.+...|..+.. ...+..+|+++- -. + .|..+....|+......+..+. .
T Consensus 245 ~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Ls-s--~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~ 321 (462)
T 2ece_A 245 TLGEENRMALELRPLHDPTKLMGFINMVVSLKDLS-S--SIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPP 321 (462)
T ss_dssp ESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCC-E--EEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECC
T ss_pred ecCCCCCccceeEeeECCCCCEEEEEEeeeccCCC-c--eEEEEEecCCceeEEEEEeCCCccccccccccccccccCCC
Confidence 87633333555543 234567887764 32 2 3443333345432222221111 1
Q ss_pred ccCceEEE-cCcEEEEEECCCCeEEEEEee
Q 003800 226 FVGDVALV-SSDTLVTLDTTRSILVTVSFK 254 (794)
Q Consensus 226 ~s~~~~~v-g~~~lv~~d~~~g~L~v~~l~ 254 (794)
....+.+- .+..+++.+...+.+.+.++.
T Consensus 322 ~pa~I~lS~DGrfLYVSnrg~d~VavfdV~ 351 (462)
T 2ece_A 322 LVTDIDISLDDKFLYLSLWGIGEVRQYDIS 351 (462)
T ss_dssp CCCCEEECTTSCEEEEEETTTTEEEEEECS
T ss_pred ceeEEEECCCCCEEEEEeCCCCEEEEEEec
Confidence 11123322 445777888888889898875
No 293
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=72.01 E-value=86 Score=36.28 Aligned_cols=105 Identities=11% Similarity=0.118 Sum_probs=58.0
Q ss_pred CCCEEEEEeC----CCEEEEEECcCCccceEEEcCcccceeeeeeeeCCEEEEEEcc---CCeEEEEeCCCCcE-eEEEe
Q 003800 52 GRKRVVVSTE----ENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSD---GSTLRAWNLPDGQM-VWESF 123 (794)
Q Consensus 52 ~~~~Vyv~t~----~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~~---g~~v~A~d~~tG~l-lWe~~ 123 (794)
+++.|++.+. .+.|+-+|+.+|+..|+......+......-..++.+++++.. ..+|+.+|..+|.. .|+.-
T Consensus 244 Dg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l 323 (693)
T 3iuj_A 244 DDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDL 323 (693)
T ss_dssp TSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEE
T ss_pred CCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEE
Confidence 3444544432 2589999998887667765544332222111356667776653 26899999998764 57754
Q ss_pred ccCccccCCccccccccccccCCeEEEE--ECC--EEEEEECCCC
Q 003800 124 LRGSKHSKPLLLVPTNLKVDKDSLILVS--SKG--CLHAVSSIDG 164 (794)
Q Consensus 124 l~~~~~s~~~~~~~~~~~~~~~~~V~V~--~~g--~l~ald~~tG 164 (794)
+..... .. . ...+ ++.+++. .++ +|+.+|..+|
T Consensus 324 ~~~~~~--~~---~--~s~~-g~~lv~~~~~~g~~~l~~~d~~g~ 360 (693)
T 3iuj_A 324 IPERQQ--VL---T--VHSG-SGYLFAEYMVDATARVEQFDYEGK 360 (693)
T ss_dssp ECCCSS--CE---E--EEEE-TTEEEEEEEETTEEEEEEECTTSC
T ss_pred ecCCCC--EE---E--EEEE-CCEEEEEEEECCeeEEEEEECCCC
Confidence 333211 11 1 1233 3444443 244 6777776644
No 294
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=71.08 E-value=19 Score=37.01 Aligned_cols=66 Identities=15% Similarity=0.162 Sum_probs=42.9
Q ss_pred CCCEEEEEeCCCEEEEEECcCCccceEEEcCcc-cceeeeeeee--CCEEEEEEccCCeEEEEeCCCCc
Q 003800 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVLGIN-DVVDGIDIAL--GKYVITLSSDGSTLRAWNLPDGQ 117 (794)
Q Consensus 52 ~~~~Vyv~t~~g~l~ALn~~tG~ivWR~~l~~~-~~i~~l~~~~--g~~~V~Vs~~g~~v~A~d~~tG~ 117 (794)
+++.+.+++.++.|.-.|.++|+..-.+.+... ..+..+.... .+..++.++.++.|+.||..+|+
T Consensus 24 ~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~ 92 (316)
T 3bg1_A 24 YGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGT 92 (316)
T ss_dssp GGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSC
T ss_pred CCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCc
Confidence 356789999999999999999875444444322 2344332111 13344435556799999999985
No 295
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=70.85 E-value=91 Score=36.38 Aligned_cols=150 Identities=13% Similarity=0.037 Sum_probs=80.8
Q ss_pred CCCEEEEEeCCCEEEEEECcCC-----c-cc--eEEEcCccc---ceeeeeeeeCCEEEEE--EccCCeEEEEeCCCCcE
Q 003800 52 GRKRVVVSTEENVIASLDLRHG-----E-IF--WRHVLGIND---VVDGIDIALGKYVITL--SSDGSTLRAWNLPDGQM 118 (794)
Q Consensus 52 ~~~~Vyv~t~~g~l~ALn~~tG-----~-iv--WR~~l~~~~---~i~~l~~~~g~~~V~V--s~~g~~v~A~d~~tG~l 118 (794)
.+++++++|..+-|..+|+++. . .. ++....... .+..+ ....++.+.+ ++. +.|..+|+.+++.
T Consensus 428 ~~g~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i-~~d~~g~lWi~~~t~-~Gl~~~d~~~~~~ 505 (758)
T 3ott_A 428 TAGQLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQI-IPDNEGNVWVLLYNN-KGIDKINPRTREV 505 (758)
T ss_dssp TTSEEEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEE-EECTTSCEEEEETTC-SSEEEEETTTTEE
T ss_pred CCCCEEEEECCCceEEEccccccccCCcceecccccccccccccceeeeE-EEcCCCCEEEEccCC-CCcEEEeCCCCce
Confidence 3678999998777899997741 1 11 222211110 12233 2344455665 444 4599999998865
Q ss_pred eEEEeccCccccCCccccccccccccCCeEEEEECCEEEEEECCCCcEEEEEeccCcceeeeeEEEEecCCEEEEEEecC
Q 003800 119 VWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSSKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAG 198 (794)
Q Consensus 119 lWe~~l~~~~~s~~~~~~~~~~~~~~~~~V~V~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~s~~~~~vyv~~~~g 198 (794)
.- .. ... ......+. .+..+.++.+.+.+.+.|.++|+.+++..--.....+......+. ...+.+++.+..|
T Consensus 506 ~~-~~-~~~-~~~~~~~~--~i~~d~~g~lWigt~~Gl~~~~~~~~~~~~~~~~gl~~~~i~~i~--~~~g~lWi~t~~G 578 (758)
T 3ott_A 506 TK-LF-ADE-LTGEKSPN--YLLCDEDGLLWVGFHGGVMRINPKDESQQSISFGSFSNNEILSMT--CVKNSIWVSTTNG 578 (758)
T ss_dssp EE-EC-TTT-SCGGGCEE--EEEECTTSCEEEEETTEEEEECC--CCCCBCCCCC---CCEEEEE--EETTEEEEEESSC
T ss_pred EE-ec-CCC-cCCCcccc--eEEECCCCCEEEEecCceEEEecCCCceEEecccCCCccceEEEE--ECCCCEEEECCCC
Confidence 42 11 111 10000000 113445678888877789999998886432111111111133343 2578999877555
Q ss_pred CceeEEEEEEcCCCcee
Q 003800 199 SSQFHAYQINAMNGELL 215 (794)
Q Consensus 199 ~~~~~v~ald~~tG~~~ 215 (794)
+..+|+++++..
T Consensus 579 -----l~~~~~~~~~~~ 590 (758)
T 3ott_A 579 -----LWIIDRKTMDAR 590 (758)
T ss_dssp -----EEEEETTTCCEE
T ss_pred -----eEEEcCCCceeE
Confidence 899999988754
No 296
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=70.22 E-value=47 Score=38.94 Aligned_cols=188 Identities=13% Similarity=0.057 Sum_probs=85.8
Q ss_pred CCEEEEEeC-CCEEEEEECcC---CccceEEEcCcc-cceeeeeeeeCCEEEEEEc-cCCeEEEEeCCCCcEeEEEeccC
Q 003800 53 RKRVVVSTE-ENVIASLDLRH---GEIFWRHVLGIN-DVVDGIDIALGKYVITLSS-DGSTLRAWNLPDGQMVWESFLRG 126 (794)
Q Consensus 53 ~~~Vyv~t~-~g~l~ALn~~t---G~ivWR~~l~~~-~~i~~l~~~~g~~~V~Vs~-~g~~v~A~d~~tG~llWe~~l~~ 126 (794)
.++||++.. .+.|..+++.+ |... ...+... ....++.+...++.+|++. ..+.|+.+++..+....-. ..
T Consensus 417 ~~~Ly~sD~~~~~I~~~~~~g~~~~~~~-~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~--~~ 493 (699)
T 1n7d_A 417 SNRIYWSDLSQRMICSTQLDRAHGVSSY-DTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLF--RE 493 (699)
T ss_dssp TTEEEECCTTTTSBEEEESCCCCC-CCC-CCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEEC--CC
T ss_pred cCeEEEEecCCCeEEEEecCCCCCCcce-EEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEE--eC
Confidence 567888765 46788887764 1110 0001111 0112332221234455553 3467899987544332211 11
Q ss_pred ccccCCcccccccccccc-CCeEEEEE---CCEEEEEECCCCcEEEEEeccCcceeeeeEEEEecCCEEEEEEecCCcee
Q 003800 127 SKHSKPLLLVPTNLKVDK-DSLILVSS---KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQF 202 (794)
Q Consensus 127 ~~~s~~~~~~~~~~~~~~-~~~V~V~~---~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~s~~~~~vyv~~~~g~~~~ 202 (794)
.+..+. .++++. ++.+|+.. .++|++++.. |..+=..-.... ..|..+.....++.+|++....+
T Consensus 494 -~~~~P~-----giavDp~~g~ly~td~~~~~~I~~~~~d-G~~~~~l~~~~l-~~PnGlavd~~~~~LY~aD~~~~--- 562 (699)
T 1n7d_A 494 -QGSKPR-----AIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLVTENI-QWPNGITLDLLSGRLYWVDSKLH--- 562 (699)
T ss_dssp -SSCCCC-----CEECCSSSSCCEECCCSSSCCEEBCCSS-SCCCCEESCSSC-SSCCCEEECTTTCCEEEEETTTT---
T ss_pred -CCCCcc-----eEEEccCCCcEEEcccCCCCeEEEEeCC-CCCeeEEEeCCC-CCccEEEEeccCCEEEEEecCCC---
Confidence 110110 012221 35566642 2677777653 321111100000 01323432234678997654333
Q ss_pred EEEEEEcCCCceeeeeeeecccCccC--ceEEEcCcEEEEEECCCCeEEEEEeecce
Q 003800 203 HAYQINAMNGELLNHETAAFSGGFVG--DVALVSSDTLVTLDTTRSILVTVSFKNRK 257 (794)
Q Consensus 203 ~v~ald~~tG~~~w~~~v~~~~~~s~--~~~~vg~~~lv~~d~~~g~L~v~~l~sg~ 257 (794)
+|..+|+..+. +... +..+..+.. .+.+ ..+.++|+|..++.+.+++..+|+
T Consensus 563 ~I~~~d~dG~~-~~~~-~~~~~~~~~P~glav-d~~~lywtd~~~~~V~~~d~~~G~ 616 (699)
T 1n7d_A 563 SISSIDVNGGN-RKTI-LEDEKRLAHPFSLAV-FEDKVFWTDIINEAIFSANRLTGS 616 (699)
T ss_dssp EEEEECSSSSC-CEEE-CCCSSSCSSCCCCEE-ETTEEEEECSTTTCEEEEETTTEE
T ss_pred eEEEEccCCCc-eEEE-EecCCcCCCceEeEE-ECCEEEEEeCCCCeEEEEEccCCC
Confidence 67788875322 2111 111111111 2222 345788999888899999987777
No 297
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=70.18 E-value=18 Score=41.82 Aligned_cols=143 Identities=12% Similarity=0.116 Sum_probs=74.5
Q ss_pred EEEEECcCCccceEEEcCcccceeeeeeee-CCEEEEEEccC-----------CeEEEEeCCCCcEeEEEeccCccccCC
Q 003800 65 IASLDLRHGEIFWRHVLGINDVVDGIDIAL-GKYVITLSSDG-----------STLRAWNLPDGQMVWESFLRGSKHSKP 132 (794)
Q Consensus 65 l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~-g~~~V~Vs~~g-----------~~v~A~d~~tG~llWe~~l~~~~~s~~ 132 (794)
+.++|+.+| .|+...+-+.......+.. ++.++++||.+ ..+..||+.+++ |+.....+.. ..
T Consensus 168 ~~~~dp~~~--~W~~~~~~P~~~~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~--w~~~~~~~~~-~~ 242 (656)
T 1k3i_A 168 YTAPQPGLG--RWGPTIDLPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGI--VSDRTVTVTK-HD 242 (656)
T ss_dssp CCCCCTTSC--EEEEEEECSSCCSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCC--BCCCEEEECS-CC
T ss_pred cccCCCCCC--eeeeeccCCCCceeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCc--EEeCcccCCC-CC
Confidence 556777777 6987554332111221122 56666666532 158899999885 6532111100 00
Q ss_pred ccccccccccccCCeEEEEE---CCEEEEEECCCCcEEEEEeccCcceeeeeEEEEecCCEEEEEEec--CC-ceeEEEE
Q 003800 133 LLLVPTNLKVDKDSLILVSS---KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYA--GS-SQFHAYQ 206 (794)
Q Consensus 133 ~~~~~~~~~~~~~~~V~V~~---~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~s~~~~~vyv~~~~--g~-~~~~v~a 206 (794)
....+ .....++.+++.. +..+..+|..++ .|+.-.+.+.-..........++++|+++.. ++ ..-.+..
T Consensus 243 ~~~~~--~~~~~~g~lyv~GG~~~~~v~~yd~~t~--~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~ 318 (656)
T 1k3i_A 243 MFCPG--ISMDGNGQIVVTGGNDAKKTSLYDSSSD--SWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEV 318 (656)
T ss_dssp CSSCE--EEECTTSCEEEECSSSTTCEEEEEGGGT--EEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEE
T ss_pred Ccccc--ccCCCCCCEEEeCCCCCCceEEecCcCC--ceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceE
Confidence 00000 0111256777763 457999999877 6886433222101111112348899988752 11 1135788
Q ss_pred EEcCCCceeeee
Q 003800 207 INAMNGELLNHE 218 (794)
Q Consensus 207 ld~~tG~~~w~~ 218 (794)
+|+.+++ |+.
T Consensus 319 yd~~t~~--W~~ 328 (656)
T 1k3i_A 319 YSPSSKT--WTS 328 (656)
T ss_dssp EETTTTE--EEE
T ss_pred eCCCCCc--cee
Confidence 9998865 766
No 298
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=68.23 E-value=1.3e+02 Score=32.03 Aligned_cols=185 Identities=16% Similarity=0.058 Sum_probs=87.0
Q ss_pred CCEEEEEeC-CCEEEEEECcCCccceEEEcCccc-ceeeeeeeeCCEEEEEEc-cCCeEEEEeCCCCcEeEEEeccCccc
Q 003800 53 RKRVVVSTE-ENVIASLDLRHGEIFWRHVLGIND-VVDGIDIALGKYVITLSS-DGSTLRAWNLPDGQMVWESFLRGSKH 129 (794)
Q Consensus 53 ~~~Vyv~t~-~g~l~ALn~~tG~ivWR~~l~~~~-~i~~l~~~~g~~~V~Vs~-~g~~v~A~d~~tG~llWe~~l~~~~~ 129 (794)
+++||++.. .+.|..+++..+.. +..+.... ...++.+.-.++.+|++. ..+.|+.+++. |...=. .+.. .+
T Consensus 127 ~~~ly~~D~~~~~I~r~~~~g~~~--~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~d-g~~~~~-l~~~-~l 201 (386)
T 3v65_B 127 RELVFWSDVTLDRILRANLNGSNV--EEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLD-GAHRKV-LLWQ-SL 201 (386)
T ss_dssp TTEEEEEETTTTEEEEEETTSCCE--EEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTT-SCSCEE-EECS-SC
T ss_pred CCeEEEEeCCCCcEEEEecCCCCc--EEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCC-CCceEE-eecC-CC
Confidence 567777764 56788888766542 22222111 122342221234444443 34578888764 432111 1111 11
Q ss_pred cCCccccccccccc-cCCeEEEEE--C-CEEEEEECCCCcEEEEEeccCcceeeeeEEEEecCCEEEEEEecCCceeEEE
Q 003800 130 SKPLLLVPTNLKVD-KDSLILVSS--K-GCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAY 205 (794)
Q Consensus 130 s~~~~~~~~~~~~~-~~~~V~V~~--~-g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~s~~~~~vyv~~~~g~~~~~v~ 205 (794)
..+. .++++ .++.+|+.. . +.|++++.. |..+-..-...-. .|..+.....++.+|++....+ ++.
T Consensus 202 ~~P~-----giavdp~~g~ly~td~~~~~~I~r~~~d-G~~~~~~~~~~~~-~PnGlavd~~~~~lY~aD~~~~---~I~ 271 (386)
T 3v65_B 202 EKPR-----AIALHPMEGTIYWTDWGNTPRIEASSMD-GSGRRIIADTHLF-WPNGLTIDYAGRRMYWVDAKHH---VIE 271 (386)
T ss_dssp SCEE-----EEEEETTTTEEEEEECSSSCEEEEEETT-SCSCEEEECSSCS-CEEEEEEEGGGTEEEEEETTTT---EEE
T ss_pred CCCc-----EEEEEcCCCeEEEeccCCCCEEEEEeCC-CCCcEEEEECCCC-CeeeEEEeCCCCEEEEEECCCC---EEE
Confidence 0110 11223 145666653 3 678888754 3222111111111 1333432235788998654433 788
Q ss_pred EEEcCCCceeeeeeeecccCccC--ceEEEcCcEEEEEECCCCeEEEEEeecce
Q 003800 206 QINAMNGELLNHETAAFSGGFVG--DVALVSSDTLVTLDTTRSILVTVSFKNRK 257 (794)
Q Consensus 206 ald~~tG~~~w~~~v~~~~~~s~--~~~~vg~~~lv~~d~~~g~L~v~~l~sg~ 257 (794)
.+|.. |...... ...++.. .+. +.++.++|+|..++.+..++..+|+
T Consensus 272 ~~d~d-G~~~~~~---~~~~~~~P~gia-v~~~~ly~td~~~~~V~~~~~~~G~ 320 (386)
T 3v65_B 272 RANLD-GSHRKAV---ISQGLPHPFAIT-VFEDSLYWTDWHTKSINSANKFTGK 320 (386)
T ss_dssp EECTT-SCSCEEE---ECSSCSSEEEEE-EETTEEEEEETTTTEEEEEETTTCC
T ss_pred EEeCC-CCeeEEE---EECCCCCceEEE-EECCEEEEeeCCCCeEEEEECCCCc
Confidence 88865 4322111 1111211 122 2455677888877888888765665
No 299
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=66.82 E-value=1.2e+02 Score=31.32 Aligned_cols=183 Identities=9% Similarity=-0.029 Sum_probs=79.0
Q ss_pred EEEEEeCCCEEEEEECcCCccceEEEcCcccceeeeeeeeCCEEEEEEc-cCCeEEEEeCCCCcE-eEEEeccCccccCC
Q 003800 55 RVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSS-DGSTLRAWNLPDGQM-VWESFLRGSKHSKP 132 (794)
Q Consensus 55 ~Vyv~t~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~-~g~~v~A~d~~tG~l-lWe~~l~~~~~s~~ 132 (794)
.++++. .+.|..+|+.++...-...+..-....++.....++.+|++. .++.|+.+++..+.. .+.....-. .+
T Consensus 6 ~ll~~~-~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~---~p 81 (318)
T 3sov_A 6 LLLYAN-RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLL---SP 81 (318)
T ss_dssp EEEEEC-EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCS---CC
T ss_pred EEEEEc-cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCC---Cc
Confidence 355554 466788888766422222222111111221112234555543 456788888766532 222211100 00
Q ss_pred ccccccccccc-cCCeEEEEE--CCEEEEEECCCCcEEEEEeccCcceeeeeEEEEecCCEEEEEEecCCceeEEEEEEc
Q 003800 133 LLLVPTNLKVD-KDSLILVSS--KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINA 209 (794)
Q Consensus 133 ~~~~~~~~~~~-~~~~V~V~~--~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~s~~~~~vyv~~~~g~~~~~v~ald~ 209 (794)
.- ++++ .++.+|+.. .+++..++........-.... ...|..+......+.+|+..... .-++..+++
T Consensus 82 -~g----lavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~--~~~P~giavdp~~g~ly~td~~~--~~~I~r~~~ 152 (318)
T 3sov_A 82 -DG----LACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQE--LDQPRAIALDPSSGFMYWTDWGE--VPKIERAGM 152 (318)
T ss_dssp -CE----EEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS--CSSEEEEEEEGGGTEEEEEECSS--SCEEEEEET
T ss_pred -cE----EEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCC--CCCccEEEEeCCCCEEEEEecCC--CCEEEEEEc
Confidence 00 1222 145666653 567777776543322222111 11133443222467888754321 126777776
Q ss_pred CCCceeeeeeeecccCccC--ceEEE-cCcEEEEEECCCCeEEEEEee
Q 003800 210 MNGELLNHETAAFSGGFVG--DVALV-SSDTLVTLDTTRSILVTVSFK 254 (794)
Q Consensus 210 ~tG~~~w~~~v~~~~~~s~--~~~~v-g~~~lv~~d~~~g~L~v~~l~ 254 (794)
. |...... ...++.. .+.+- .++.++|+|..++.+...++.
T Consensus 153 d-G~~~~~~---~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~d 196 (318)
T 3sov_A 153 D-GSSRFII---INSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLD 196 (318)
T ss_dssp T-SCSCEEE---ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred C-CCCeEEE---EECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCC
Confidence 4 4332111 0111211 11111 234555666655666666654
No 300
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=66.72 E-value=1.5e+02 Score=32.10 Aligned_cols=110 Identities=11% Similarity=0.028 Sum_probs=56.2
Q ss_pred CCEEEEE---E-ccCCeEEEEeCCCC--------cEeEEEeccCccccCCccccccccccccC-CeEEE-E-ECCEEEEE
Q 003800 95 GKYVITL---S-SDGSTLRAWNLPDG--------QMVWESFLRGSKHSKPLLLVPTNLKVDKD-SLILV-S-SKGCLHAV 159 (794)
Q Consensus 95 g~~~V~V---s-~~g~~v~A~d~~tG--------~llWe~~l~~~~~s~~~~~~~~~~~~~~~-~~V~V-~-~~g~l~al 159 (794)
.+..+++ + +.++.|+.||..++ +.+.......+.. .....+ ....+ +.+++ . .+|.|...
T Consensus 103 dg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~v----~~~p~~~~~las~s~Dg~v~iw 177 (434)
T 2oit_A 103 DNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAG-GMVIDM----KWNPTVPSMVAVCLADGSIAVL 177 (434)
T ss_dssp TSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGG-GSEEEE----EECSSCTTEEEEEETTSCEEEE
T ss_pred CCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCC-CceEEE----EECCCCCCEEEEEECCCeEEEE
Confidence 3445554 3 34679999998876 4444444321100 011111 11112 33444 4 38999999
Q ss_pred ECCCCcEEEEEeccCcceeeeeEEEEecCCEEEEEEecCCceeEEEEEEcCCCceee
Q 003800 160 SSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLN 216 (794)
Q Consensus 160 d~~tG~~~W~~~~~~~~~~~~~~v~s~~~~~vyv~~~~g~~~~~v~ald~~tG~~~w 216 (794)
|..+|............ ...+..+..+..+++.+.+| .+..+|.. |+...
T Consensus 178 D~~~~~~~~~~~~~~~~--v~~v~wspdg~~lasgs~dg----~v~iwd~~-~~~~~ 227 (434)
T 2oit_A 178 QVTETVKVCATLPSTVA--VTSVCWSPKGKQLAVGKQNG----TVVQYLPT-LQEKK 227 (434)
T ss_dssp EESSSEEEEEEECGGGC--EEEEEECTTSSCEEEEETTS----CEEEECTT-CCEEE
T ss_pred EcCCCcceeeccCCCCc--eeEEEEcCCCCEEEEEcCCC----cEEEEccC-Ccccc
Confidence 99988665544321111 22232233444555544444 67888887 66543
No 301
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=65.34 E-value=1.8e+02 Score=32.59 Aligned_cols=152 Identities=11% Similarity=0.113 Sum_probs=75.4
Q ss_pred CCEEEEEeCC-CEEEEEECcCCccceEEEcCccc--ceeeeee-------eeCCEEEEEEccCC-------eEEEEeCCC
Q 003800 53 RKRVVVSTEE-NVIASLDLRHGEIFWRHVLGIND--VVDGIDI-------ALGKYVITLSSDGS-------TLRAWNLPD 115 (794)
Q Consensus 53 ~~~Vyv~t~~-g~l~ALn~~tG~ivWR~~l~~~~--~i~~l~~-------~~g~~~V~Vs~~g~-------~v~A~d~~t 115 (794)
.+.||++.+. +.|..+|+++|.+.=-....... ....+.. ...++.++++...+ .++.++...
T Consensus 151 ~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~ 230 (496)
T 3kya_A 151 KDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNA 230 (496)
T ss_dssp EEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCT
T ss_pred CCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCC
Confidence 4678888875 67888999888765222121110 1223322 23445566665432 377776544
Q ss_pred -CcEeE---EEeccCccccCCcccccccccccc-CCeEEEE--ECCEEEEEECC-------CCcEEEE------------
Q 003800 116 -GQMVW---ESFLRGSKHSKPLLLVPTNLKVDK-DSLILVS--SKGCLHAVSSI-------DGEILWT------------ 169 (794)
Q Consensus 116 -G~llW---e~~l~~~~~s~~~~~~~~~~~~~~-~~~V~V~--~~g~l~ald~~-------tG~~~W~------------ 169 (794)
|...+ ...+.. ...+..+ ..+. ++.+|+. .++.|+++|.+ +|.. |+
T Consensus 231 ~G~~~~~~~~~~v~~--~~~p~gi-----avdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~-~tp~~~~~~g~~~~ 302 (496)
T 3kya_A 231 DGTFDDRSDIQLIAA--YKQCNGA-----TIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGS-WDPIVKNNPNTFKQ 302 (496)
T ss_dssp TSCCSTTSCEEEEEE--ESCCCCE-----EECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCC-CCCBGGGCTTTEEE
T ss_pred CCceeecccceeecc--CCCceEE-----EEcCCCCeEEEEECCCCEEEEEecccccccccCcee-ecccccccccccce
Confidence 55432 011111 1001111 2232 4677775 38899999998 6653 21
Q ss_pred -EeccCcceeeeeEEEEecCCEEEEEEecCCceeEEEEEEcCCCce
Q 003800 170 -RDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGEL 214 (794)
Q Consensus 170 -~~~~~~~~~~~~~v~s~~~~~vyv~~~~g~~~~~v~ald~~tG~~ 214 (794)
+..+.... +..+.....++.+|+.. .+...+..+.+|..+|..
T Consensus 303 l~~~~~~~~-p~~ia~~p~G~~lYvaD-~~~h~I~kid~dg~~~~~ 346 (496)
T 3kya_A 303 LFTIADPSW-EFQIFIHPTGKYAYFGV-INNHYFMRSDYDEIKKEF 346 (496)
T ss_dssp EEECSSSSC-CEEEEECTTSSEEEEEE-TTTTEEEEEEEETTTTEE
T ss_pred eEecCCCCC-ceEEEEcCCCCEEEEEe-CCCCEEEEEecCCCccee
Confidence 22222222 34443233444578754 443344444466666643
No 302
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Probab=65.23 E-value=65 Score=36.73 Aligned_cols=109 Identities=24% Similarity=0.312 Sum_probs=63.2
Q ss_pred CEEEEEECcCCccceEEEcCcccc----eeeeeee----eCC-EEEEEEccC---------------------------C
Q 003800 63 NVIASLDLRHGEIFWRHVLGINDV----VDGIDIA----LGK-YVITLSSDG---------------------------S 106 (794)
Q Consensus 63 g~l~ALn~~tG~ivWR~~l~~~~~----i~~l~~~----~g~-~~V~Vs~~g---------------------------~ 106 (794)
..|.|.+. +|+.+||..+..... ...+.+. .|. .+++.+..| .
T Consensus 151 ~~l~aY~l-dG~~LW~idlg~ni~aGa~yt~~~V~DlDGDGkaEIvv~TadGt~dg~g~~ig~~~~dyrn~~g~il~GpE 229 (591)
T 2zux_A 151 VLIDAYKL-DGTKLWRINLGKNIRAGAHYTQFMVYDLDGDGKAEVAMKTADGTKDGTGKVIGNANADYRNEQGRVLSGPE 229 (591)
T ss_dssp CEEEEECT-TSCEEEEEECCTTSCCSTTSCCCEEECSSSSSSCEEEEEECTTCBCTTSCBCSSTTCCCBCTTSCBCSSCC
T ss_pred cEEEEEEC-CCCEEEEEcCCCCcccccccCceeEEEcCCCCcceEEEEccCCcccCCceEecccccccccccceeecCCc
Confidence 57999998 599999999865311 0011111 122 244433332 1
Q ss_pred eEEEEeCCCCcEeEEEeccCccccC-----------C--ccccccccccccCC-eEEE-E---ECCEEEEEECCCCc--E
Q 003800 107 TLRAWNLPDGQMVWESFLRGSKHSK-----------P--LLLVPTNLKVDKDS-LILV-S---SKGCLHAVSSIDGE--I 166 (794)
Q Consensus 107 ~v~A~d~~tG~llWe~~l~~~~~s~-----------~--~~~~~~~~~~~~~~-~V~V-~---~~g~l~ald~~tG~--~ 166 (794)
.+..+|-.||+.++......+.... + ...++ -.++.. .+++ . ....|.|+|..+|+ +
T Consensus 230 yL~vfdG~TG~~l~~~~~~p~rg~~~~WGD~ygnR~drf~~~va---yLDG~~Ps~v~~rGyYtr~~v~A~d~~~~~L~~ 306 (591)
T 2zux_A 230 YLTVFQGSTGKELVTANFEPARGNVSDWGDSYGNRVDRFLAGIA---YLDGQRPSLIMTRGYYAKTMLVAYNFRDGKLSK 306 (591)
T ss_dssp EEEEEETTTCCEEEEEECSSCCCCGGGGTCSSSSGGGCEEEEEE---CTTSSSCEEEEEECCSSSCEEEEEEEETTEEEE
T ss_pred EEEEEeCCCCCEEecccCCCCCCcccccccccccccccceeeEE---ECCCCCceEEEeccccceeEEEEEECCCCceEE
Confidence 4899999999999998875322100 0 00111 122221 2232 2 24679999999996 5
Q ss_pred EEEEeccCc
Q 003800 167 LWTRDFAAE 175 (794)
Q Consensus 167 ~W~~~~~~~ 175 (794)
+|++....+
T Consensus 307 ~W~~d~~~~ 315 (591)
T 2zux_A 307 LWTLDSSKS 315 (591)
T ss_dssp EEEEETTST
T ss_pred EEEecCCCC
Confidence 899988653
No 303
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=63.99 E-value=2.1e+02 Score=32.91 Aligned_cols=143 Identities=8% Similarity=-0.031 Sum_probs=64.8
Q ss_pred EEEEEeCCCEEEEEECcCCccceEEEcCcccceeeeeeeeCCEEEEEEc-cCCeEEEEeCCCCcEeEEEeccCccccCCc
Q 003800 55 RVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSS-DGSTLRAWNLPDGQMVWESFLRGSKHSKPL 133 (794)
Q Consensus 55 ~Vyv~t~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~-~g~~v~A~d~~tG~llWe~~l~~~~~s~~~ 133 (794)
.++++ ..+.|..+|.++.+..-...+..-....++.....++.+|++. ..+.|+.+++..+... .-+..+.. .+.
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~--~v~~~g~~-~P~ 83 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALE--HVVEFGLD-YPE 83 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE--EEECSSCS-CCC
T ss_pred EEEEE-eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcE--EEEeCCCC-Ccc
Confidence 34444 5677889998776543222221111122332233455666654 3567888887543221 11111100 000
Q ss_pred cccccccccc-cCCeEEEEE--CCEEEEEECCCCcEEEEEeccCcceeeeeEEEEecCCEEEEEEecCCceeEEEEEEcC
Q 003800 134 LLVPTNLKVD-KDSLILVSS--KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAM 210 (794)
Q Consensus 134 ~~~~~~~~~~-~~~~V~V~~--~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~s~~~~~vyv~~~~g~~~~~v~ald~~ 210 (794)
.++++ .++.+|+.. .+++..++...+...=-.. ..-..|..+..-...+.+|+... |. .-++..+++.
T Consensus 84 -----GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~--~~l~~P~~iavdp~~G~lY~tD~-g~-~~~I~r~~~d 154 (628)
T 4a0p_A 84 -----GMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVW--KDLDSPRALALDPAEGFMYWTEW-GG-KPKIDRAAMD 154 (628)
T ss_dssp -----EEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEEC--SSCCCEEEEEEETTTTEEEEEEC-SS-SCEEEEEETT
T ss_pred -----eEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEe--CCCCCcccEEEccCCCeEEEeCC-CC-CCEEEEEeCC
Confidence 01222 145666653 5677777765332211111 11112444432224678887542 21 1266666664
No 304
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=63.08 E-value=2.1e+02 Score=32.73 Aligned_cols=104 Identities=7% Similarity=-0.066 Sum_probs=44.6
Q ss_pred CCEEEEEEc-cCCeEEEEeCCCCcEeEEEeccCccccCCcccccccccccc-CCeEEEEE--CCEEEEEECCCCcEEEEE
Q 003800 95 GKYVITLSS-DGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDK-DSLILVSS--KGCLHAVSSIDGEILWTR 170 (794)
Q Consensus 95 g~~~V~Vs~-~g~~v~A~d~~tG~llWe~~l~~~~~s~~~~~~~~~~~~~~-~~~V~V~~--~g~l~ald~~tG~~~W~~ 170 (794)
.++.+|++. ..++++.++.. |...++.-+..+.. .+. .++++- ++.+|+.. .+++..++.+.....--.
T Consensus 50 ~~~~ly~sD~~~~~I~r~~~~-g~~~~~~v~~~~~~--~P~----GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~ 122 (619)
T 3s94_A 50 SHGLIYWSDVSEEAIKRTEFN-KTESVQNVVVSGLL--SPD----GLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLF 122 (619)
T ss_dssp TTTEEEEEETTTTEEEEEEC------CEEEECSSCS--CEE----EEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE
T ss_pred CCCEEEEEECCCCeEEEEEcc-CCCceEEEEeCCCC--CcC----eEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEE
Confidence 355666654 34678888875 43333333322211 111 112332 45566653 677777776543322111
Q ss_pred eccCcceeeeeEEEEecCCEEEEEEecCCceeEEEEEEc
Q 003800 171 DFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINA 209 (794)
Q Consensus 171 ~~~~~~~~~~~~v~s~~~~~vyv~~~~g~~~~~v~ald~ 209 (794)
. .. -..|..+..-...+.+|+... |. .-++...++
T Consensus 123 ~-~~-l~~P~~Iavdp~~g~ly~tD~-g~-~~~I~r~~~ 157 (619)
T 3s94_A 123 W-QE-LDQPRAIALDPSSGFMYWTDW-GE-VPKIERAGM 157 (619)
T ss_dssp C-SS-CSCCCCEEEETTTTEEEEEEC-SS-SCEEEEEET
T ss_pred e-CC-CCCCceEEEecCCCeEEEecc-CC-CCEEEEEEC
Confidence 1 11 011334432224577886542 21 125565665
No 305
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=61.83 E-value=2e+02 Score=33.37 Aligned_cols=155 Identities=6% Similarity=0.026 Sum_probs=78.9
Q ss_pred eCCEEEEEEccC----CeEEEEeCCCCcEeEEEec-cC--ccccCCcccccccccccc-CCeEEEEEC--------CEEE
Q 003800 94 LGKYVITLSSDG----STLRAWNLPDGQMVWESFL-RG--SKHSKPLLLVPTNLKVDK-DSLILVSSK--------GCLH 157 (794)
Q Consensus 94 ~g~~~V~Vs~~g----~~v~A~d~~tG~llWe~~l-~~--~~~s~~~~~~~~~~~~~~-~~~V~V~~~--------g~l~ 157 (794)
.++.++++||.+ +.+..||+.+++ |+... .. +.. +.+.......... ++.+||.++ ..+.
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~--W~~~~~~~p~~~~--p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~ 471 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDK--IDMKNIEVSSSEV--PVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNW 471 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSC--EEEEECCCCCSCC--CCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCE
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCe--EEEeccCCCCCCC--CccccceEEEEEccCCEEEEEcCCCCCCCccccEE
Confidence 566666667642 468999998875 88654 21 111 0011111111221 456666531 3577
Q ss_pred EEECCCCcEEEEEeccCcceeeeeEEEEecCCEEEEEEecCCceeEEEEEEcCCCceeeeeeee---cccCccCce-EEE
Q 003800 158 AVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAA---FSGGFVGDV-ALV 233 (794)
Q Consensus 158 ald~~tG~~~W~~~~~~~~~~~~~~v~s~~~~~vyv~~~~g~~~~~v~ald~~tG~~~w~~~v~---~~~~~s~~~-~~v 233 (794)
.+|..+. .|+.-.+.+.-......-...++.+|++|...+.. .+..+|+.+++ |+..-. .|....+.+ +++
T Consensus 472 ~yd~~t~--~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~-~v~~yd~~t~~--W~~~~~~g~~p~~r~~~~a~v~ 546 (695)
T 2zwa_A 472 IFDMKTR--EWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGP-AMLLYNVTEEI--FKDVTPKDEFFQNSLVSAGLEF 546 (695)
T ss_dssp EEETTTT--EEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSC-SEEEEETTTTE--EEECCCSSGGGGSCCBSCEEEE
T ss_pred EEeCCCC--cEEECCCCCCCcccceEEEEcCCEEEEECCCCCCC-CEEEEECCCCc--eEEccCCCCCCCcccceeEEEE
Confidence 7887765 57764433221011111112488999887543333 68999998864 876432 343333322 333
Q ss_pred c---CcEEEEEEC------CCCeEEEEEeecce
Q 003800 234 S---SDTLVTLDT------TRSILVTVSFKNRK 257 (794)
Q Consensus 234 g---~~~lv~~d~------~~g~L~v~~l~sg~ 257 (794)
+ +.++++.-. ..+.+.+.|+.+++
T Consensus 547 ~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~ 579 (695)
T 2zwa_A 547 DPVSKQGIILGGGFMDQTTVSDKAIIFKYDAEN 579 (695)
T ss_dssp ETTTTEEEEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred eCCCCEEEEECCcCCCCCeeeCcEEEEEccCCc
Confidence 3 334444311 12356777777654
No 306
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=60.97 E-value=1.8e+02 Score=31.13 Aligned_cols=182 Identities=12% Similarity=0.069 Sum_probs=79.9
Q ss_pred EEEEEeCCCEEEEEECcCCccceEEEcCcccceeeeeeeeCCEEEEEEc-cCCeEEEEeCCCCcE--eEEEeccCccccC
Q 003800 55 RVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSS-DGSTLRAWNLPDGQM--VWESFLRGSKHSK 131 (794)
Q Consensus 55 ~Vyv~t~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~-~g~~v~A~d~~tG~l--lWe~~l~~~~~s~ 131 (794)
.++++. .+.|..+|...+..... +.......++.....++.+|++. ..+.|+.+++..+.. ..+..+... + .
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~~~~~--~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~-~-~ 159 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSEYTSL--IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD-I-Q 159 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCSCEEE--ECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSS-C-S
T ss_pred eeEEec-cceeEEEccCCcceeEe--ccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCC-C-C
Confidence 355554 57889999887654443 32222233442222345666653 456888888754221 111111111 1 0
Q ss_pred Ccccccccccccc-CCeEEEEE--CCEEEEEECCCCcEEEEEeccCcceeeeeEEEEecCCEEEEEEecCCceeEEEEEE
Q 003800 132 PLLLVPTNLKVDK-DSLILVSS--KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQIN 208 (794)
Q Consensus 132 ~~~~~~~~~~~~~-~~~V~V~~--~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~s~~~~~vyv~~~~g~~~~~v~ald 208 (794)
.+.- ++++. .+.+|+.. .+++..++...+...-...... ..|..+......+.+|+... |. .-++..++
T Consensus 160 ~p~g----lavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~--~~P~~iavdp~~g~ly~td~-~~-~~~I~~~~ 231 (400)
T 3p5b_L 160 APDG----LAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENG--SKPRAIVVDPVHGFMYWTDW-GT-PAKIKKGG 231 (400)
T ss_dssp CEEE----EEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSS--CCEEEEEEETTTTEEEEEEC-SS-SCCEEEEE
T ss_pred Cccc----EEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCC--CCcceEEEecccCeEEEEeC-CC-CCEEEEEe
Confidence 0100 12222 45566653 5677777765443322222111 11434431124677886542 21 11566666
Q ss_pred cCCCceeeee---eeecccCccCceEEE-cCcEEEEEECCCCeEEEEEee
Q 003800 209 AMNGELLNHE---TAAFSGGFVGDVALV-SSDTLVTLDTTRSILVTVSFK 254 (794)
Q Consensus 209 ~~tG~~~w~~---~v~~~~~~s~~~~~v-g~~~lv~~d~~~g~L~v~~l~ 254 (794)
+. |...... .+..|.+ +.+- .++.++|+|..++.+.+.++.
T Consensus 232 ~d-G~~~~~~~~~~l~~P~g----lavd~~~~~lY~aD~~~~~I~~~d~d 276 (400)
T 3p5b_L 232 LN-GVDIYSLVTENIQWPNG----ITLDLLSGRLYWVDSKLHSISSIDVN 276 (400)
T ss_dssp TT-SCSCEEEECSSCSCEEE----EEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CC-CCccEEEEECCCCceEE----EEEEeCCCEEEEEECCCCEEEEEeCC
Confidence 64 4322111 1111211 1111 234555666665666666654
No 307
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=58.39 E-value=1.7e+02 Score=31.24 Aligned_cols=104 Identities=9% Similarity=0.116 Sum_probs=60.0
Q ss_pred EEEEEeCCCEEEEEEC-------cCCccceEEEcCcccceeeeeeeeCCEEEEEEccCCeEEEEeCC-----CCcEeEEE
Q 003800 55 RVVVSTEENVIASLDL-------RHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLP-----DGQMVWES 122 (794)
Q Consensus 55 ~Vyv~t~~g~l~ALn~-------~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~-----tG~llWe~ 122 (794)
.+|+..++|.+.-+.. .+++++.+..++.. +.+..+-...+.+|++-.+..|+.+|+. +++++...
T Consensus 145 yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq--~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~ 222 (355)
T 3amr_A 145 YAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQ--TEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRA 222 (355)
T ss_dssp EEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSC--EEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEB
T ss_pred EEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCC--cceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEe
Confidence 4888888888776433 35577888777654 4455222356789989877679999966 57777655
Q ss_pred eccCccccCCccccccccccccCCeEEEEE--CCEEEEEECC
Q 003800 123 FLRGSKHSKPLLLVPTNLKVDKDSLILVSS--KGCLHAVSSI 162 (794)
Q Consensus 123 ~l~~~~~s~~~~~~~~~~~~~~~~~V~V~~--~g~l~ald~~ 162 (794)
.. +.+..+++-+......++.+.+++.+ ++.+..+|..
T Consensus 223 ~~--g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 223 DG--RHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp SS--SSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred cC--CccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 32 22211222111000112123566654 5567777764
No 308
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=58.35 E-value=1.6e+02 Score=29.72 Aligned_cols=66 Identities=9% Similarity=0.123 Sum_probs=37.8
Q ss_pred cCCCEEEEEeCC-----CEEEEEECcCCccceEEEcCcccceeeeeee-eCCEEEEEEcc--------------------
Q 003800 51 TGRKRVVVSTEE-----NVIASLDLRHGEIFWRHVLGINDVVDGIDIA-LGKYVITLSSD-------------------- 104 (794)
Q Consensus 51 ~~~~~Vyv~t~~-----g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~-~g~~~V~Vs~~-------------------- 104 (794)
++++.|++++.. ..|+.+|..+|+..-- ..... +..+... .++.+++.+..
T Consensus 68 pDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l--~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~ 144 (347)
T 2gop_A 68 PDGKKIAFMRANEEKKVSEIWVADLETLSSKKI--LEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDL 144 (347)
T ss_dssp TTSSEEEEEEEETTTTEEEEEEEETTTTEEEEE--EEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC----
T ss_pred CCCCEEEEEEeccCCCcceEEEEECCCCceEEE--EcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCc
Confidence 345566666542 3589999988875322 22222 3333222 34555665422
Q ss_pred ------CCeEEEEeCCCCcEe
Q 003800 105 ------GSTLRAWNLPDGQMV 119 (794)
Q Consensus 105 ------g~~v~A~d~~tG~ll 119 (794)
...|+.||..+|+.+
T Consensus 145 ~~~~~~~~~l~~~d~~~~~~~ 165 (347)
T 2gop_A 145 GFFDGEKTTFWIFDTESEEVI 165 (347)
T ss_dssp -----CEEEEEEEETTTTEEE
T ss_pred ccccCccceEEEEECCCCeEE
Confidence 257999999999873
No 309
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=58.32 E-value=1.5e+02 Score=29.50 Aligned_cols=65 Identities=8% Similarity=0.046 Sum_probs=39.3
Q ss_pred CCEEEEEeCCCEEEEEECcCCccceEEEcC-cccceeeeeeeeC--CEEEEEEccCCeEEEEeCCCCc
Q 003800 53 RKRVVVSTEENVIASLDLRHGEIFWRHVLG-INDVVDGIDIALG--KYVITLSSDGSTLRAWNLPDGQ 117 (794)
Q Consensus 53 ~~~Vyv~t~~g~l~ALn~~tG~ivWR~~l~-~~~~i~~l~~~~g--~~~V~Vs~~g~~v~A~d~~tG~ 117 (794)
+..++.++.+|.|.--|.++|+..=...+. ....+..+..... +..++.++.++.++.||..++.
T Consensus 67 g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~ 134 (297)
T 2pm7_B 67 GTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENG 134 (297)
T ss_dssp CSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSS
T ss_pred CCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCC
Confidence 467888999999999999988521111121 1122333321111 3355556667899999998774
No 310
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=58.21 E-value=1.8e+02 Score=30.34 Aligned_cols=143 Identities=9% Similarity=-0.019 Sum_probs=65.8
Q ss_pred CCEEEEEeCCCEEEEEECcCCccceEEEcCcccceeeeeeeeCCEEEEEEc-cCCeEEEEeCCCCcEeEEEeccCccccC
Q 003800 53 RKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSS-DGSTLRAWNLPDGQMVWESFLRGSKHSK 131 (794)
Q Consensus 53 ~~~Vyv~t~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~-~g~~v~A~d~~tG~llWe~~l~~~~~s~ 131 (794)
...++++.. +.|..+++..... ...+.......++.....++.++++. ..+.|+.+++..+...-- .... +..
T Consensus 44 ~~~ll~~~~-~~I~~i~~~g~~~--~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~--~~~~-~~~ 117 (349)
T 3v64_C 44 EPVLLFANR-IDIRQVLPHRSEY--TLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEV--VSTG-LES 117 (349)
T ss_dssp CCEEEEECB-SCEEEECTTSCCE--EEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE--ECSS-CSC
T ss_pred CceeEeecc-cceEEEeCCCCee--EEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEE--EeCC-CCC
Confidence 344666554 4477888755432 33333222222332222345565553 456888888765542211 1111 100
Q ss_pred Cccccccccccc-cCCeEEEEE--CCEEEEEECCCCcEEEEEeccCcceeeeeEEEEecCCEEEEEEecCCceeEEEEEE
Q 003800 132 PLLLVPTNLKVD-KDSLILVSS--KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQIN 208 (794)
Q Consensus 132 ~~~~~~~~~~~~-~~~~V~V~~--~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~s~~~~~vyv~~~~g~~~~~v~ald 208 (794)
+ . .++++ .++.+|+.. .+.+..++.......--.... ...|..+.....++.+|+..... .-++..++
T Consensus 118 p-~----glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~--l~~P~~iavdp~~g~ly~td~~~--~~~I~r~~ 188 (349)
T 3v64_C 118 P-G----GLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQS--LEKPRAIALHPMEGTIYWTDWGN--TPRIEASS 188 (349)
T ss_dssp C-C----EEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTT--CSCEEEEEEETTTTEEEEEECSS--SCEEEEEE
T ss_pred c-c----EEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCC--CCCcceEEEecCcCeEEEeccCC--CCEEEEEe
Confidence 0 0 01222 145666653 567888876543322211111 11244443222467888755332 12677777
Q ss_pred cC
Q 003800 209 AM 210 (794)
Q Consensus 209 ~~ 210 (794)
+.
T Consensus 189 ~d 190 (349)
T 3v64_C 189 MD 190 (349)
T ss_dssp TT
T ss_pred CC
Confidence 64
No 311
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=57.45 E-value=2e+02 Score=30.67 Aligned_cols=190 Identities=13% Similarity=0.017 Sum_probs=87.9
Q ss_pred CCEEEEEeC-CCEEEEEECcCCc--cceEEEcCcc-cceeeeeeeeCCEEEEEE-ccCCeEEEEeCCCCcEeEEEeccCc
Q 003800 53 RKRVVVSTE-ENVIASLDLRHGE--IFWRHVLGIN-DVVDGIDIALGKYVITLS-SDGSTLRAWNLPDGQMVWESFLRGS 127 (794)
Q Consensus 53 ~~~Vyv~t~-~g~l~ALn~~tG~--ivWR~~l~~~-~~i~~l~~~~g~~~V~Vs-~~g~~v~A~d~~tG~llWe~~l~~~ 127 (794)
+++||+++. .+.|..+++..+. .......... ....++.+.-.++.+|++ ...+.|+..|+..+...-... .
T Consensus 123 ~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~--~- 199 (400)
T 3p5b_L 123 SNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR--E- 199 (400)
T ss_dssp TTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEE--C-
T ss_pred cCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEe--C-
Confidence 677888865 5678888875432 1122222211 122244222113344444 334678888875433221111 1
Q ss_pred cccCCcccccccccccc-CCeEEEEE---CCEEEEEECCCCcEEEEEeccCcceeeeeEEEEecCCEEEEEEecCCceeE
Q 003800 128 KHSKPLLLVPTNLKVDK-DSLILVSS---KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFH 203 (794)
Q Consensus 128 ~~s~~~~~~~~~~~~~~-~~~V~V~~---~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~s~~~~~vyv~~~~g~~~~~ 203 (794)
.+..+. .++++. .+.+|+.. .+.+.+++.......--.. ..-. .|..+......+.+|++..... +
T Consensus 200 ~~~~P~-----~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~-~~l~-~P~glavd~~~~~lY~aD~~~~---~ 269 (400)
T 3p5b_L 200 NGSKPR-----AIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT-ENIQ-WPNGITLDLLSGRLYWVDSKLH---S 269 (400)
T ss_dssp SSCCEE-----EEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEEC-SSCS-CEEEEEEETTTTEEEEEETTTT---E
T ss_pred CCCCcc-----eEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEE-CCCC-ceEEEEEEeCCCEEEEEECCCC---E
Confidence 110110 012232 45666653 3567777754322211111 1101 1334432235788998654333 7
Q ss_pred EEEEEcCCCceeeeeeeecccCccCc-eEEEcCcEEEEEECCCCeEEEEEeecce
Q 003800 204 AYQINAMNGELLNHETAAFSGGFVGD-VALVSSDTLVTLDTTRSILVTVSFKNRK 257 (794)
Q Consensus 204 v~ald~~tG~~~w~~~v~~~~~~s~~-~~~vg~~~lv~~d~~~g~L~v~~l~sg~ 257 (794)
+..+|.. |..+.... ..+..+... -+-+.++.++|+|..++.+...+..+|+
T Consensus 270 I~~~d~d-G~~~~~~~-~~~~~l~~P~gl~v~~~~lywtd~~~~~V~~~~~~~G~ 322 (400)
T 3p5b_L 270 ISSIDVN-GGNRKTIL-EDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGS 322 (400)
T ss_dssp EEEEETT-SCCCEEEE-ECSSTTSSEEEEEEETTEEEEEESSSCSEEEEESSSCC
T ss_pred EEEEeCC-CCccEEEE-eCCCCCCCCEEEEEeCCEEEEecCCCCeEEEEEcCCCC
Confidence 8888874 44332221 111122221 1123556777888888888888876765
No 312
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=57.25 E-value=1.9e+02 Score=30.34 Aligned_cols=30 Identities=10% Similarity=0.031 Sum_probs=22.4
Q ss_pred ceeeeeeeeeccCCCEEEEEeCCCEEEEEECcCCc
Q 003800 40 KVKHAVFHTQKTGRKRVVVSTEENVIASLDLRHGE 74 (794)
Q Consensus 40 ~~~~~~f~~~~~~~~~Vyv~t~~g~l~ALn~~tG~ 74 (794)
.|....|. | ++++||+...|.|..+| .+|+
T Consensus 30 ~P~~ia~~-p---dG~l~V~e~~g~I~~~d-~~G~ 59 (354)
T 3a9g_A 30 VPWSIAPL-G---GGRYLVTERPGRLVLIS-PSGK 59 (354)
T ss_dssp CEEEEEEE-E---TTEEEEEETTTEEEEEC-SSCE
T ss_pred CCeEEEEc-C---CCeEEEEeCCCEEEEEe-CCCc
Confidence 34444454 2 67899999999999998 5786
No 313
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=54.32 E-value=39 Score=39.65 Aligned_cols=150 Identities=9% Similarity=0.064 Sum_probs=70.3
Q ss_pred CCEEEEEeC-CCEEEEEECcCCccceEEEcCcc-cceeeeeeeeCCEEEEEEccC--CeEEEEeCCCCcEeEEEeccCcc
Q 003800 53 RKRVVVSTE-ENVIASLDLRHGEIFWRHVLGIN-DVVDGIDIALGKYVITLSSDG--STLRAWNLPDGQMVWESFLRGSK 128 (794)
Q Consensus 53 ~~~Vyv~t~-~g~l~ALn~~tG~ivWR~~l~~~-~~i~~l~~~~g~~~V~Vs~~g--~~v~A~d~~tG~llWe~~l~~~~ 128 (794)
+++||++.. .+.|..+|+..+.... .+... ....++.+...++.+|++..+ ++|+.+++ +|..+=.. +.. .
T Consensus 464 ~g~LY~tD~~~~~I~v~d~dg~~~~~--l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~-dG~~~~~l-~~~-~ 538 (699)
T 1n7d_A 464 HSNIYWTDSVLGTVSVADTKGVKRKT--LFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGL-NGVDIYSL-VTE-N 538 (699)
T ss_dssp SSBCEECCTTTSCEEEEBSSSCCEEE--ECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCS-SSCCCCEE-SCS-S
T ss_pred CCcEEEEeccCCeEEEEecCCCceEE--EEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeC-CCCCeeEE-EeC-C
Confidence 566777754 5678888875443221 12111 111233111234455655432 46776665 34322111 111 1
Q ss_pred ccCCcccccccccccc-CCeEEEEE--CCEEEEEECCCCcEEEEEeccCcce-eeeeEEEEecCCEEEEEEecCCceeEE
Q 003800 129 HSKPLLLVPTNLKVDK-DSLILVSS--KGCLHAVSSIDGEILWTRDFAAESV-EVQQVIQLDESDQIYVVGYAGSSQFHA 204 (794)
Q Consensus 129 ~s~~~~~~~~~~~~~~-~~~V~V~~--~g~l~ald~~tG~~~W~~~~~~~~~-~~~~~v~s~~~~~vyv~~~~g~~~~~v 204 (794)
+ ..|..++++. .+.+|+.. .++|.+++...+.. -.+-.....+ .|..+ ...++.+|++...++ +|
T Consensus 539 l-----~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~-~~~~~~~~~~~~P~gl--avd~~~lywtd~~~~---~V 607 (699)
T 1n7d_A 539 I-----QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSL--AVFEDKVFWTDIINE---AI 607 (699)
T ss_dssp C-----SSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCC-EEECCCSSSCSSCCCC--EEETTEEEEECSTTT---CE
T ss_pred C-----CCccEEEEeccCCEEEEEecCCCeEEEEccCCCce-EEEEecCCcCCCceEe--EEECCEEEEEeCCCC---eE
Confidence 1 0011112331 35677763 66888888753222 1211111111 12233 235678887664443 78
Q ss_pred EEEEcCCCceeeee
Q 003800 205 YQINAMNGELLNHE 218 (794)
Q Consensus 205 ~ald~~tG~~~w~~ 218 (794)
..+|+.+|+.+-..
T Consensus 608 ~~~d~~~G~~~~~i 621 (699)
T 1n7d_A 608 FSANRLTGSDVNLL 621 (699)
T ss_dssp EEEETTTEEEEECC
T ss_pred EEEEccCCCceEEe
Confidence 88898888876544
No 314
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=53.79 E-value=1.9e+02 Score=29.30 Aligned_cols=63 Identities=11% Similarity=0.184 Sum_probs=39.2
Q ss_pred CCEEEEEeCCCEEEEEECcCCccceEEEcC---cccceeeeeeeeCCEEEEEEccCCeEEEEeCCC
Q 003800 53 RKRVVVSTEENVIASLDLRHGEIFWRHVLG---INDVVDGIDIALGKYVITLSSDGSTLRAWNLPD 115 (794)
Q Consensus 53 ~~~Vyv~t~~g~l~ALn~~tG~ivWR~~l~---~~~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~t 115 (794)
.+.+++++.++.|.-.|.++|...-...+. ....+..+.....+..++.++.++.|+.||..+
T Consensus 24 ~~~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~ 89 (330)
T 2hes_X 24 QGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEE 89 (330)
T ss_dssp TTEEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC--
T ss_pred CCEEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEccc
Confidence 347888899999999999887543333442 223344443233344555566678999999864
No 315
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=52.71 E-value=2.8e+02 Score=30.92 Aligned_cols=62 Identities=10% Similarity=0.087 Sum_probs=34.7
Q ss_pred CCEEEEEeCCC-------EEEEEECcC-Cccce---EEEcCcccceeeeeeeeCCEEEEEEc-cCCeEEEEeCC
Q 003800 53 RKRVVVSTEEN-------VIASLDLRH-GEIFW---RHVLGINDVVDGIDIALGKYVITLSS-DGSTLRAWNLP 114 (794)
Q Consensus 53 ~~~Vyv~t~~g-------~l~ALn~~t-G~ivW---R~~l~~~~~i~~l~~~~g~~~V~Vs~-~g~~v~A~d~~ 114 (794)
++.+|++...+ .++.++.+. |+..+ ++.+.......++.+...++.++++. ..++|+.+|+.
T Consensus 204 G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~ 277 (496)
T 3kya_A 204 AEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLV 277 (496)
T ss_dssp TCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEETTTTEEEEECHH
T ss_pred CCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEECCCCEEEEEecc
Confidence 45699998875 377887554 56543 12232211112332223345566554 45789999998
No 316
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=51.88 E-value=3.4e+02 Score=31.61 Aligned_cols=136 Identities=10% Similarity=0.012 Sum_probs=63.1
Q ss_pred EEEEEECcCC-ccceEEEcCcccceeeeee-eeCCEEEEEEccC----CeEEEEeCCCCc----EeEEEeccCccccCCc
Q 003800 64 VIASLDLRHG-EIFWRHVLGINDVVDGIDI-ALGKYVITLSSDG----STLRAWNLPDGQ----MVWESFLRGSKHSKPL 133 (794)
Q Consensus 64 ~l~ALn~~tG-~ivWR~~l~~~~~i~~l~~-~~g~~~V~Vs~~g----~~v~A~d~~tG~----llWe~~l~~~~~s~~~ 133 (794)
.|+.+|..+| +.+=. .++ ....++.- ..++.+++++.+. .+|+.++..+|. ++++..-. .....+
T Consensus 202 ~l~v~dl~~g~~~l~~-~~~--~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~--~~~~~~ 276 (751)
T 2xe4_A 202 TIEFKRISDPSQTIAD-KVS--GTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNP--LFSAFM 276 (751)
T ss_dssp EEEEEETTCTTCCCCC-CEE--EECSCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCT--TCEEEE
T ss_pred EEEEEECCCCCEeCCc-ccc--CceeeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCC--ceEEEE
Confidence 4888888888 63210 000 00111111 2455666655321 368888877763 44442111 110000
Q ss_pred cccccccccccCCeEEEEE----CCEEEEEECCCCcEEE--EEeccCcceeeeeEEEE-ecCCEEEEEEecC-CceeEEE
Q 003800 134 LLVPTNLKVDKDSLILVSS----KGCLHAVSSIDGEILW--TRDFAAESVEVQQVIQL-DESDQIYVVGYAG-SSQFHAY 205 (794)
Q Consensus 134 ~~~~~~~~~~~~~~V~V~~----~g~l~ald~~tG~~~W--~~~~~~~~~~~~~~v~s-~~~~~vyv~~~~g-~~~~~v~ 205 (794)
.. ..+ ++.+++.. ...|+.+|..+|...+ +.-.+........+ . ..++.+|+.+..+ ....+++
T Consensus 277 ~~-----SpD-g~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~--~~~~g~~l~~~t~~~~a~~~~L~ 348 (751)
T 2xe4_A 277 YK-----AAD-TNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDV--QMHGTSHLVILTNEGGAVNHKLL 348 (751)
T ss_dssp EE-----CTT-SSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEE--EEETTTEEEEEECTTTCTTCEEE
T ss_pred EE-----CCC-CCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEE--eeeeCCEEEEEeCCCCCCCcEEE
Confidence 11 122 23444432 4468888887763223 22111111001111 1 2377788777653 3456899
Q ss_pred EEEcCCC
Q 003800 206 QINAMNG 212 (794)
Q Consensus 206 ald~~tG 212 (794)
.+|..++
T Consensus 349 ~~d~~~~ 355 (751)
T 2xe4_A 349 IAPRGQP 355 (751)
T ss_dssp EEETTST
T ss_pred EEcCCCc
Confidence 9998764
No 317
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=50.55 E-value=2.7e+02 Score=30.04 Aligned_cols=198 Identities=7% Similarity=0.065 Sum_probs=94.0
Q ss_pred CCEEEEEeCC-----CEEEEEECcCCccceEEEcCcccceeeeeeeeCCEEEEEEc-cCCeEEEEeCCCCcEeEEEeccC
Q 003800 53 RKRVVVSTEE-----NVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSS-DGSTLRAWNLPDGQMVWESFLRG 126 (794)
Q Consensus 53 ~~~Vyv~t~~-----g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~-~g~~v~A~d~~tG~llWe~~l~~ 126 (794)
++.||++... ..+..+++ +|...++..+.......++.+...++.++++. ..++|+.+|+.++...-......
T Consensus 190 G~~lyvad~~~~~~~~~v~~~~~-~g~~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~ 268 (430)
T 3tc9_A 190 ADSMIITNDQNNNDRPNNYILTR-ESGFKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQD 268 (430)
T ss_dssp SSEEEEEECCSCTTSEEEEEEEG-GGTSCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSS
T ss_pred CCEEEEEeCCCCcccceEEEEeC-CCceeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCC
Confidence 4558988862 24666775 56555444443221122332222245566654 45799999998776522222222
Q ss_pred ccccCCccccccccccccCCe-EEEEE--CCEEEEEECC--CCcE----EEEEeccC----------cce-eeeeEEEEe
Q 003800 127 SKHSKPLLLVPTNLKVDKDSL-ILVSS--KGCLHAVSSI--DGEI----LWTRDFAA----------ESV-EVQQVIQLD 186 (794)
Q Consensus 127 ~~~s~~~~~~~~~~~~~~~~~-V~V~~--~g~l~ald~~--tG~~----~W~~~~~~----------~~~-~~~~~v~s~ 186 (794)
... +..+ +.+.++. +|+.. ++++++++.. +|.. .+.-.... ..+ .|.+.+...
T Consensus 269 ~~~--P~gi-----a~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~ 341 (430)
T 3tc9_A 269 SGW--EFHI-----QFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVK 341 (430)
T ss_dssp SSC--CEEE-----EECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEE
T ss_pred CCc--ceeE-----EEcCCCCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEc
Confidence 111 1111 2333444 77763 7888887654 3432 11111000 001 133222111
Q ss_pred --------cCCEEEEEEecCCceeEEEEEEcCCCceeeeeeeec--ccC-----ccCceEEEcCcEEEEEECCCCeEEEE
Q 003800 187 --------ESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAF--SGG-----FVGDVALVSSDTLVTLDTTRSILVTV 251 (794)
Q Consensus 187 --------~~~~vyv~~~~g~~~~~v~ald~~tG~~~w~~~v~~--~~~-----~s~~~~~vg~~~lv~~d~~~g~L~v~ 251 (794)
.++.+|+....+. ++..+|+ +|+...-.-... ..+ .....-+ ....=+|+|+.++.|++.
T Consensus 342 ~~~y~~~D~~g~lyvaD~~n~---~I~~i~~-~G~v~~~~g~g~~~~~G~~dG~~~~~~~~-~~P~giavd~~~g~lyVa 416 (430)
T 3tc9_A 342 NPAYKGSSDEYDFYFCDRENH---CIRILTP-QGRVTTFAGRGSNGTSGYNDGDLRQEARF-NHPEGIVYDEERECFFIG 416 (430)
T ss_dssp CGGGTTSSCCEEEEEEEGGGT---EEEEECT-TSEEEEEEECCTTSSSSCBCEETTTTCBC-SSEEEEEEETTTTEEEEE
T ss_pred cccccccCCCCeEEEEECCCc---EEEEECC-CCcEEEEEeCCCCCCCcccCCCchhhcEe-CCCcEEEEECCCCEEEEE
Confidence 2367887654433 6777884 675442221100 001 0000000 123346777656888888
Q ss_pred EeecceeeeEEEee
Q 003800 252 SFKNRKIAFQETHL 265 (794)
Q Consensus 252 ~l~sg~~~~~~~~l 265 (794)
|..+.+ ++.+.+
T Consensus 417 D~~n~r--Ir~i~~ 428 (430)
T 3tc9_A 417 DRENRR--IRKIGY 428 (430)
T ss_dssp EGGGTE--EEEEEE
T ss_pred ECCCCe--EEEEcc
Confidence 887777 555544
No 318
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=50.20 E-value=31 Score=34.70 Aligned_cols=27 Identities=11% Similarity=-0.028 Sum_probs=20.9
Q ss_pred CCEEEEEeCCCEEEEEEC-cCCccceEEE
Q 003800 53 RKRVVVSTEENVIASLDL-RHGEIFWRHV 80 (794)
Q Consensus 53 ~~~Vyv~t~~g~l~ALn~-~tG~ivWR~~ 80 (794)
+++||+. .+|.|+..++ .++...|.-.
T Consensus 51 ~G~LYaV-~~G~Ly~~~~~t~~~~~W~~s 78 (236)
T 1tl2_A 51 GGELYGV-LNDKIYKGTPPTHDNDNWMGR 78 (236)
T ss_dssp TSCEEEE-ETTEEEEESCCCSTTCCHHHH
T ss_pred CccEEEE-eCCeEEEECCCCCCccccccc
Confidence 6779988 8888999998 5566777643
No 319
>3sd2_A Putative member of DUF3244 protein family; immunoglobulin-like beta-sandwich, structural genomics, JOIN for structural genomics; HET: MSE; 1.40A {Bacteroides thetaiotaomicron}
Probab=47.23 E-value=24 Score=30.67 Aligned_cols=39 Identities=23% Similarity=0.385 Sum_probs=30.6
Q ss_pred eccCCceEEEEEEcCCCCCCcCCCCCCCcEEEEEEEEceeeeEEEEEEecCC
Q 003800 703 KYISKNLLFVATVAPKASGHIGSADPDEAWLVVYLIDTITGRILHRMTHHGA 754 (794)
Q Consensus 703 KYLNPNl~~v~t~~~~~~~~~~~~~~~~~~l~v~liD~VTG~il~s~~h~~~ 754 (794)
-||+= ++.|--.+. .+.++|.++|.-||+++|+..+.+.
T Consensus 30 A~I~n-vlsV~F~~~------------~~~vTItItNe~TG~~VYs~~~s~p 68 (101)
T 3sd2_A 30 AILSN-ILNVSFGRA------------KDYAIITVTNKATGEIVHSKTYHNT 68 (101)
T ss_dssp EEETT-EEEEEESSC------------CSCEEEEEEETTTCCEEEEEEESSC
T ss_pred EEEeC-EEEEEeccC------------CCcEEEEEEECCCCcEEEEEeccCC
Confidence 46665 555554443 4799999999999999999999983
No 320
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=45.35 E-value=4e+02 Score=30.60 Aligned_cols=65 Identities=6% Similarity=0.017 Sum_probs=40.2
Q ss_pred ccCCCEEEEEeCC---------CEEEEEECcCCccceEEEcCc-ccceeeeee-eeCCEEEEEEccCCeEEEEeCCCCcE
Q 003800 50 KTGRKRVVVSTEE---------NVIASLDLRHGEIFWRHVLGI-NDVVDGIDI-ALGKYVITLSSDGSTLRAWNLPDGQM 118 (794)
Q Consensus 50 ~~~~~~Vyv~t~~---------g~l~ALn~~tG~ivWR~~l~~-~~~i~~l~~-~~g~~~V~Vs~~g~~v~A~d~~tG~l 118 (794)
+++++.|++++.+ +.++-+|.++|+.. .+.. ...+..... ..|+.+++++ ++.|+.||..+|..
T Consensus 70 Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~---~l~~~~~~~~~~~~SPdG~~la~~~--~~~i~~~~~~~~~~ 144 (740)
T 4a5s_A 70 SPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI---TEERIPNNTQWVTWSPVGHKLAYVW--NNDIYVKIEPNLPS 144 (740)
T ss_dssp CTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC---CSSCCCTTEEEEEECSSTTCEEEEE--TTEEEEESSTTSCC
T ss_pred CCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEE---EcccCCCcceeeEECCCCCEEEEEE--CCeEEEEECCCCce
Confidence 4556667777764 66778999999754 2332 221221111 2566677754 35899999998874
Q ss_pred e
Q 003800 119 V 119 (794)
Q Consensus 119 l 119 (794)
.
T Consensus 145 ~ 145 (740)
T 4a5s_A 145 Y 145 (740)
T ss_dssp E
T ss_pred E
Confidence 3
No 321
>2zuy_A YESX protein; beta-propeller, lyase; 1.65A {Bacillus subtilis}
Probab=44.96 E-value=1.9e+02 Score=33.15 Aligned_cols=108 Identities=19% Similarity=0.261 Sum_probs=61.7
Q ss_pred EEEEEECcCCccceEEEcCcccce----eeeeee----eCC-EEEEEEccC---------------------------Ce
Q 003800 64 VIASLDLRHGEIFWRHVLGINDVV----DGIDIA----LGK-YVITLSSDG---------------------------ST 107 (794)
Q Consensus 64 ~l~ALn~~tG~ivWR~~l~~~~~i----~~l~~~----~g~-~~V~Vs~~g---------------------------~~ 107 (794)
.|.|++. +|+.+||..+...... ..+.+. .|. .+++.+..| ..
T Consensus 156 ~l~aY~l-dG~~LW~idlg~Ni~aGahyt~~~V~DlDGDGkaEIvv~TadGt~dg~g~vigd~~~dyr~~~g~il~G~ey 234 (620)
T 2zuy_A 156 LIDAYKL-DGTFLWRINLGRNIRAGAHYTQFMVYDLDGDGKAEIAMKTADGTTDGKGHIIGDEQADFRNEQGRILSGPEY 234 (620)
T ss_dssp EEEEECT-TSCEEEEEECCTTSCCSTTSCCCEEECSSSSSSCEEEEEECTTCBCTTSCBCSCTTCCCBCTTSCBCSSCCE
T ss_pred EEEEEEC-CCCEEEEEcCCCCcccccccCceeEEEcCCCCcceEEEEccCCcccCcceeecccccccccccceEecCCeE
Confidence 7899998 5999999988643110 011111 122 244433332 34
Q ss_pred EEEEeCCCCcEeEEEeccCccc-----------cCC--ccccccccccccCC-eEEE-E---ECCEEEEEECCCCc--EE
Q 003800 108 LRAWNLPDGQMVWESFLRGSKH-----------SKP--LLLVPTNLKVDKDS-LILV-S---SKGCLHAVSSIDGE--IL 167 (794)
Q Consensus 108 v~A~d~~tG~llWe~~l~~~~~-----------s~~--~~~~~~~~~~~~~~-~V~V-~---~~g~l~ald~~tG~--~~ 167 (794)
+..+|-.||+.+|......+.. ..+ ...++ -.+++. .+++ . ....|.|+|..+|+ .+
T Consensus 235 L~vfdG~TG~~l~t~~~~p~rg~~~~WGD~yGnR~drf~~~va---yLDG~~Ps~v~~rG~Ytr~~v~A~d~~~g~L~~~ 311 (620)
T 2zuy_A 235 LTVFKGETGEALTTVEYEPPRGKLEDWGDGYGNRMDRFLAGTA---YLDGERPSLVMARGYYTRTVLVAYDFRNGRLKKR 311 (620)
T ss_dssp EEEEETTTCCEEEEEECSSCCCSGGGGTSSSSTTTTCEEEEEE---CTTCC-CEEEEEECSSSSCEEEEEEEETTEEEEE
T ss_pred EEEEcCCCcceeeecccCCCcCccccccccccccccccceeEE---ecCCCCceEEEecCcccceeEEEEEccCCceeee
Confidence 8999999999999988743211 001 00111 122222 2222 2 14679999999995 78
Q ss_pred EEEeccCc
Q 003800 168 WTRDFAAE 175 (794)
Q Consensus 168 W~~~~~~~ 175 (794)
|++....+
T Consensus 312 W~~ds~~~ 319 (620)
T 2zuy_A 312 WVFDSNQP 319 (620)
T ss_dssp EEEETTST
T ss_pred eEecCCCC
Confidence 99987543
No 322
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=43.46 E-value=2.8e+02 Score=28.22 Aligned_cols=181 Identities=12% Similarity=0.060 Sum_probs=83.8
Q ss_pred EEEEeCCCEEEEEECcCCccceEEEcCcccceeeeeeeeCCEEEEEEc-cCCeEEEEeCCC---CcEeEEEeccCccccC
Q 003800 56 VVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSS-DGSTLRAWNLPD---GQMVWESFLRGSKHSK 131 (794)
Q Consensus 56 Vyv~t~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~-~g~~v~A~d~~t---G~llWe~~l~~~~~s~ 131 (794)
+++++. +.|..+|+.+++.. ..+.......++.....++.+|++. .++.|+.+|+.. |... +..+... +..
T Consensus 4 ll~~~~-~~I~~i~~~~~~~~--~~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~-~~~~~~~-~~~ 78 (316)
T 1ijq_A 4 LFFTNR-HEVRKMTLDRSEYT--SLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSY-DTVISRD-IQA 78 (316)
T ss_dssp EEEECB-SSEEEEETTSCCCE--EEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------C-EEEECSS-CSC
T ss_pred EEEECC-CeEEEEECCCcceE--ehhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCccc-EEEEeCC-CCC
Confidence 555554 45788898877643 2222222222332222344566554 457899999865 1211 1111111 101
Q ss_pred Cccccccccccc-cCCeEEEEE--CCEEEEEECCCCcEEEEEeccCcceeeeeEEEEecCCEEEEEEecCCceeEEEEEE
Q 003800 132 PLLLVPTNLKVD-KDSLILVSS--KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQIN 208 (794)
Q Consensus 132 ~~~~~~~~~~~~-~~~~V~V~~--~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~s~~~~~vyv~~~~g~~~~~v~ald 208 (794)
+ .- ++++ .++.+|+.. .+++..++........-..... ..|..+.....++.+|+..... ..++..++
T Consensus 79 p-~g----lavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~--~~P~~iavdp~~g~ly~~d~~~--~~~I~~~~ 149 (316)
T 1ijq_A 79 P-DG----LAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENG--SKPRAIVVDPVHGFMYWTDWGT--PAKIKKGG 149 (316)
T ss_dssp C-CE----EEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTT--CCEEEEEEETTTTEEEEEECSS--SCEEEEEE
T ss_pred c-CE----EEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCC--CCcceEEeCCCCCEEEEEccCC--CCeEEEEc
Confidence 1 11 1233 246677763 6788888876444333222111 1244443222478888765321 12677777
Q ss_pred cCCCceeeeeeeecccCccC--ceEEE-cCcEEEEEECCCCeEEEEEee
Q 003800 209 AMNGELLNHETAAFSGGFVG--DVALV-SSDTLVTLDTTRSILVTVSFK 254 (794)
Q Consensus 209 ~~tG~~~w~~~v~~~~~~s~--~~~~v-g~~~lv~~d~~~g~L~v~~l~ 254 (794)
+ +|...... . ...+.. .+.+- .++.++++|..++.+.+.++.
T Consensus 150 ~-dG~~~~~~--~-~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~d 194 (316)
T 1ijq_A 150 L-NGVDIYSL--V-TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN 194 (316)
T ss_dssp T-TSCCEEEE--E-CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred C-CCCCeEEE--E-ECCCCCceEEEEeccCCEEEEEECCCCeEEEEecC
Confidence 6 45433211 0 111211 11221 245666677666666666665
No 323
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=40.13 E-value=3.4e+02 Score=28.18 Aligned_cols=185 Identities=15% Similarity=0.078 Sum_probs=87.3
Q ss_pred CCEEEEEeC-CCEEEEEECcCCccceEEEcCcc-cceeeeeeeeCCEEEEEEc-cCCeEEEEeCCCCcEeEEEeccCccc
Q 003800 53 RKRVVVSTE-ENVIASLDLRHGEIFWRHVLGIN-DVVDGIDIALGKYVITLSS-DGSTLRAWNLPDGQMVWESFLRGSKH 129 (794)
Q Consensus 53 ~~~Vyv~t~-~g~l~ALn~~tG~ivWR~~l~~~-~~i~~l~~~~g~~~V~Vs~-~g~~v~A~d~~tG~llWe~~l~~~~~ 129 (794)
+++||++.. .+.|..+++.++.. +...... ....++.+.-.++.+|++. ..+.|+.++.. |...-.. +.. .+
T Consensus 84 ~~~ly~~D~~~~~I~r~~~~g~~~--~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~d-G~~~~~l-~~~-~l 158 (349)
T 3v64_C 84 RELVFWSDVTLDRILRANLNGSNV--EEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLD-GAHRKVL-LWQ-SL 158 (349)
T ss_dssp TTEEEEEETTTTEEEEEETTSCSC--EEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT-SCSCEEE-ECT-TC
T ss_pred ccEEEEEeccCCceEEEecCCCCc--eEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCC-CCceEEE-EeC-CC
Confidence 567877764 56788888766542 1212111 1122442221234454443 34678888874 4432111 111 11
Q ss_pred cCCcccccccccccc-CCeEEEEE--C-CEEEEEECCCCcEEEEEeccCcceeeeeEEEEecCCEEEEEEecCCceeEEE
Q 003800 130 SKPLLLVPTNLKVDK-DSLILVSS--K-GCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAY 205 (794)
Q Consensus 130 s~~~~~~~~~~~~~~-~~~V~V~~--~-g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~s~~~~~vyv~~~~g~~~~~v~ 205 (794)
..+. .++++. ++.+|+.. . +++++++.. |..+-..- ......|..+.....++.+|++....+ ++.
T Consensus 159 ~~P~-----~iavdp~~g~ly~td~~~~~~I~r~~~d-G~~~~~~~-~~~~~~PnGla~d~~~~~lY~aD~~~~---~I~ 228 (349)
T 3v64_C 159 EKPR-----AIALHPMEGTIYWTDWGNTPRIEASSMD-GSGRRIIA-DTHLFWPNGLTIDYAGRRMYWVDAKHH---VIE 228 (349)
T ss_dssp SCEE-----EEEEETTTTEEEEEECSSSCEEEEEETT-SCSCEESC-CSSCSCEEEEEEETTTTEEEEEETTTT---EEE
T ss_pred CCcc-----eEEEecCcCeEEEeccCCCCEEEEEeCC-CCCcEEEE-ECCCCCcceEEEeCCCCEEEEEECCCC---EEE
Confidence 0110 112331 45666653 3 678888754 32111110 011111334432235788998654433 788
Q ss_pred EEEcCCCceeeeeeeecccCccC--ceEEEcCcEEEEEECCCCeEEEEEeecce
Q 003800 206 QINAMNGELLNHETAAFSGGFVG--DVALVSSDTLVTLDTTRSILVTVSFKNRK 257 (794)
Q Consensus 206 ald~~tG~~~w~~~v~~~~~~s~--~~~~vg~~~lv~~d~~~g~L~v~~l~sg~ 257 (794)
.+|.. |...... ....+.. .+.+ .++.++|+|..++.+..++-.+|+
T Consensus 229 ~~~~d-G~~~~~~---~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~ 277 (349)
T 3v64_C 229 RANLD-GSHRKAV---ISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGK 277 (349)
T ss_dssp EEETT-SCSCEEE---ECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCC
T ss_pred EEeCC-CCceEEE---EeCCCCCceEEEE-ECCEEEEecCCCCeEEEEEccCCC
Confidence 88875 4322111 1111211 1222 456677888777888777755555
No 324
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=39.14 E-value=4.9e+02 Score=29.83 Aligned_cols=102 Identities=9% Similarity=0.005 Sum_probs=54.6
Q ss_pred CCEEEEEeCCCEEEEEECcCCccceEEEcCccc--c--eee--eeee-eCCEEEEEEccC--------CeEEEEeCCCCc
Q 003800 53 RKRVVVSTEENVIASLDLRHGEIFWRHVLGIND--V--VDG--IDIA-LGKYVITLSSDG--------STLRAWNLPDGQ 117 (794)
Q Consensus 53 ~~~Vyv~t~~g~l~ALn~~tG~ivWR~~l~~~~--~--i~~--l~~~-~g~~~V~Vs~~g--------~~v~A~d~~tG~ 117 (794)
++.+++.+ +|.|...|.+||+. ++.+.... . +.. +... .|+.+++.+... +.++.||..+|+
T Consensus 27 dg~~~~~~-~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~ 103 (740)
T 4a5s_A 27 DHEYLYKQ-ENNILVFNAEYGNS--SVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQ 103 (740)
T ss_dssp SSEEEEEE-TTEEEEEETTTCCE--EEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTE
T ss_pred CCcEEEEc-CCcEEEEECCCCce--EEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCc
Confidence 44544444 89999999999986 34343321 0 101 1112 344455533321 467899999998
Q ss_pred EeEEEeccCcc-ccCCccccccccccccCCeEEEEECCEEEEEECCCCcE
Q 003800 118 MVWESFLRGSK-HSKPLLLVPTNLKVDKDSLILVSSKGCLHAVSSIDGEI 166 (794)
Q Consensus 118 llWe~~l~~~~-~s~~~~~~~~~~~~~~~~~V~V~~~g~l~ald~~tG~~ 166 (794)
..- +.... ....+.+ .++ ++.++...++.|+..|..+|+.
T Consensus 104 ~~~---l~~~~~~~~~~~~-----SPd-G~~la~~~~~~i~~~~~~~~~~ 144 (740)
T 4a5s_A 104 LIT---EERIPNNTQWVTW-----SPV-GHKLAYVWNNDIYVKIEPNLPS 144 (740)
T ss_dssp ECC---SSCCCTTEEEEEE-----CSS-TTCEEEEETTEEEEESSTTSCC
T ss_pred EEE---cccCCCcceeeEE-----CCC-CCEEEEEECCeEEEEECCCCce
Confidence 652 32211 0011111 223 3344444688888888887763
No 325
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=38.82 E-value=1.2e+02 Score=32.31 Aligned_cols=63 Identities=11% Similarity=0.082 Sum_probs=42.9
Q ss_pred cCCCEEEEEeCCCEEEEEECcCCccceEEEcCcccceeeeeeeeCCEEEEEEccCCeEEEEeCC
Q 003800 51 TGRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLP 114 (794)
Q Consensus 51 ~~~~~Vyv~t~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~ 114 (794)
...+.||+.|..|.|.-.|..||..+.|.....+.-+....-...++++.|... |+|.....+
T Consensus 269 ~kygviyviTK~G~ihlyDleTgt~i~~nrIS~d~iF~ta~~~~~~Gi~~Vnr~-GqVl~v~v~ 331 (365)
T 2xzh_A 269 EKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRK-GQVLSVCVE 331 (365)
T ss_dssp TTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEEGGGTEEEEEETT-CEEEEEEEC
T ss_pred ccCCEEEEEeCCcEEEEEEcccCcEEEEeccCCCceEEecccCCCCcEEEEcCC-CEEEEEEEC
Confidence 346789999999999999999999999998876622212211234556665543 355555443
No 326
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=36.23 E-value=5.3e+02 Score=29.37 Aligned_cols=185 Identities=11% Similarity=0.059 Sum_probs=91.5
Q ss_pred CCCEEEEEeC-CCEEEEEECcCCccceEEEcCcc-cceeeeeeeeCCEEEEEEc-cCCeEEEEeCCCCcEeEEEeccCcc
Q 003800 52 GRKRVVVSTE-ENVIASLDLRHGEIFWRHVLGIN-DVVDGIDIALGKYVITLSS-DGSTLRAWNLPDGQMVWESFLRGSK 128 (794)
Q Consensus 52 ~~~~Vyv~t~-~g~l~ALn~~tG~ivWR~~l~~~-~~i~~l~~~~g~~~V~Vs~-~g~~v~A~d~~tG~llWe~~l~~~~ 128 (794)
.+++||++.- .+.|..+++..+.. +..+..+ ....++.+.-.++.+|++. ..+.|...++. |... ..+....
T Consensus 47 ~~~~lywtD~~~~~I~r~~~~g~~~--~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~d-G~~~--~~l~~~~ 121 (628)
T 4a0p_A 47 TDNRIYWTDISLKTISRAFMNGSAL--EHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLD-GQHR--QVLVWKD 121 (628)
T ss_dssp TTTEEEEEETTTTEEEEEETTSCSC--EEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT-STTC--EEEECSS
T ss_pred CCCEEEEEECCCCeEEEEECCCCCc--EEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecC-CCcE--EEEEeCC
Confidence 3678888875 57888888754432 3333322 1223452221233444443 35678888874 4322 1111111
Q ss_pred ccCCcccccccccccc-CCeEEEEE---CCEEEEEECCCCcEEEEEeccCcceeeeeEEEEecCCEEEEEEecCCceeEE
Q 003800 129 HSKPLLLVPTNLKVDK-DSLILVSS---KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHA 204 (794)
Q Consensus 129 ~s~~~~~~~~~~~~~~-~~~V~V~~---~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~s~~~~~vyv~~~~g~~~~~v 204 (794)
+..+. .++++. .+.+|+.. .+++.+.+.......=-.. . -..|..+.....++.+|++....+ .+
T Consensus 122 l~~P~-----~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~--~-~~~P~GlalD~~~~~LY~aD~~~~---~I 190 (628)
T 4a0p_A 122 LDSPR-----ALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVP--N-VGRANGLTIDYAKRRLYWTDLDTN---LI 190 (628)
T ss_dssp CCCEE-----EEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC--S-CSSEEEEEEETTTTEEEEEETTTT---EE
T ss_pred CCCcc-----cEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEEC--C-CCCcceEEEccccCEEEEEECCCC---EE
Confidence 10111 112331 45666653 4577777654322111111 1 011333432234688998664433 78
Q ss_pred EEEEcCCCceeeeeeeecccCccCce-EEEcCcEEEEEECCCCeEEEEEeecce
Q 003800 205 YQINAMNGELLNHETAAFSGGFVGDV-ALVSSDTLVTLDTTRSILVTVSFKNRK 257 (794)
Q Consensus 205 ~ald~~tG~~~w~~~v~~~~~~s~~~-~~vg~~~lv~~d~~~g~L~v~~l~sg~ 257 (794)
..+|...+.. +. +. ..+..+. +-+.++.++|+|..++.+...+..+|+
T Consensus 191 ~~~d~dG~~~--~v-~~--~~l~~P~glav~~~~ly~tD~~~~~I~~~dk~tg~ 239 (628)
T 4a0p_A 191 ESSNMLGLNR--EV-IA--DDLPHPFGLTQYQDYIYWTDWSRRSIERANKTSGQ 239 (628)
T ss_dssp EEEETTSCSC--EE-EE--ECCSCEEEEEEETTEEEEEETTTTEEEEEETTTCC
T ss_pred EEEcCCCCce--EE-ee--ccCCCceEEEEECCEEEEecCCCCEEEEEECCCCC
Confidence 8888855433 11 11 1222211 112346788999888899999987776
No 327
>3d33_A Domain of unknown function with AN immunoglobulin beta-sandwich fold; structural genomics, joint center for structural genomics; HET: MSE; 1.70A {Bacteroides vulgatus atcc 8482}
Probab=35.76 E-value=58 Score=28.68 Aligned_cols=41 Identities=12% Similarity=0.201 Sum_probs=31.1
Q ss_pred eeccCCceEEEEEEcCCCCCCcCCCCCCCcEEEEEEEEceeeeEEEEEEecCC
Q 003800 702 YKYISKNLLFVATVAPKASGHIGSADPDEAWLVVYLIDTITGRILHRMTHHGA 754 (794)
Q Consensus 702 YKYLNPNl~~v~t~~~~~~~~~~~~~~~~~~l~v~liD~VTG~il~s~~h~~~ 754 (794)
.-|++=|++.|--.++ -..++|.+.|.-+|+++|+..+...
T Consensus 32 ~A~id~~~L~I~F~~~------------~~~vtItI~~~~tG~iVY~~~v~~~ 72 (108)
T 3d33_A 32 TVFTDGYLLTLKNASP------------DRDMTIRITDMAKGGVVYENDIPEV 72 (108)
T ss_dssp EEEEETTEEEEEESSC------------CSEEEEEEEETTTCCEEEEEEECGG
T ss_pred EEEEECCEEEEEECCc------------CCCEEEEEEECCCCcEEEEEeecCC
Confidence 3445556666655444 3799999999999999999999775
No 328
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=35.48 E-value=98 Score=26.98 Aligned_cols=63 Identities=17% Similarity=0.268 Sum_probs=38.9
Q ss_pred eeCCEEEEEEccCCeEEEEeCCCCcEeEEEeccCccccCCccccccccccccCCeEEEEECCEEEEEECCCCcEEEEEec
Q 003800 93 ALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSSKGCLHAVSSIDGEILWTRDF 172 (794)
Q Consensus 93 ~~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~l~~~~~s~~~~~~~~~~~~~~~~~V~V~~~g~l~ald~~tG~~~W~~~~ 172 (794)
..+...+.+..+| .+..++...|..+|......... ...+.+..+|.|.-+|. +|.++|+-..
T Consensus 22 ~~g~~~L~~q~dG-NLvL~~~~~~~~vWssnt~~~~~---------------~~~l~l~~dGNLVl~d~-~~~~iW~S~t 84 (113)
T 3mez_B 22 ATRDYSLVMRDDC-NLVLTKGSKTNIVWESGTSGRGQ---------------HCFMRLGHSGELDITDD-RLNTVFVSNT 84 (113)
T ss_dssp EETTEEEEECTTS-CEEEEETTTTEEEEECCCTTSCS---------------SCEEEECTTSCEEEECT-TSCEEEECSC
T ss_pred EcCCEEEEEcCCC-EEEEEECCCCEEEEECCcccCCc---------------CEEEEEeCCCcEEEECC-CCCEEEECCC
Confidence 4566677776654 67778875689999966432110 11122224777777764 6789998644
No 329
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=34.76 E-value=1.9e+02 Score=25.01 Aligned_cols=58 Identities=12% Similarity=0.074 Sum_probs=34.7
Q ss_pred EEEEeCCCEEEEEECcCCccceEEEcCcccceeeeeeeeCCEEEEEEccCCeEEEEeCCCCcEeEEEec
Q 003800 56 VVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFL 124 (794)
Q Consensus 56 Vyv~t~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~l 124 (794)
.+....+|-|.-.+...|.++|........ ....+.+..+ |.+..+|. +|..+|+...
T Consensus 27 ~L~~q~dGNLvL~~~~~~~~vWssnt~~~~---------~~~~l~l~~d-GNLVl~d~-~~~~iW~S~t 84 (113)
T 3mez_B 27 SLVMRDDCNLVLTKGSKTNIVWESGTSGRG---------QHCFMRLGHS-GELDITDD-RLNTVFVSNT 84 (113)
T ss_dssp EEEECTTSCEEEEETTTTEEEEECCCTTSC---------SSCEEEECTT-SCEEEECT-TSCEEEECSC
T ss_pred EEEEcCCCEEEEEECCCCEEEEECCcccCC---------cCEEEEEeCC-CcEEEECC-CCCEEEECCC
Confidence 444566776777776568999995443211 1113333443 45777775 6788998654
No 330
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=34.00 E-value=2e+02 Score=29.03 Aligned_cols=64 Identities=6% Similarity=0.021 Sum_probs=34.2
Q ss_pred EEEEEEccCCeEEEEeCCCCcE--eEEEeccCccccCCccccccccccccCCeEEEEE-CCEEEEEECCCCc
Q 003800 97 YVITLSSDGSTLRAWNLPDGQM--VWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSS-KGCLHAVSSIDGE 165 (794)
Q Consensus 97 ~~V~Vs~~g~~v~A~d~~tG~l--lWe~~l~~~~~s~~~~~~~~~~~~~~~~~V~V~~-~g~l~ald~~tG~ 165 (794)
..++.++.++.|+.||..+|.. +.......... ..+.+.+ ...+..++..+ |+.+...|..+|+
T Consensus 26 ~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V-~~v~~~~----~~~~~~l~s~s~D~~v~iWd~~~~~ 92 (316)
T 3bg1_A 26 TRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPV-WQVAWAH----PMYGNILASCSYDRKVIIWREENGT 92 (316)
T ss_dssp CEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCE-EEEEECC----GGGSSCEEEEETTSCEEEECCSSSC
T ss_pred CEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccE-EEEEeCC----CCCCCEEEEEECCCEEEEEECCCCc
Confidence 3444455668999999999864 33333332221 1111110 01123344343 8888888888874
No 331
>4h3o_A Lectin; cadmium, plant protein; 2.17A {Allium sativum} PDB: 1kj1_A* 1bwu_P* 1kj1_D* 1bwu_Q* 1bwu_A* 1bwu_D*
Probab=32.13 E-value=1.7e+02 Score=25.04 Aligned_cols=81 Identities=20% Similarity=0.412 Sum_probs=0.0
Q ss_pred EEEeCCCEEEEEECcCCccceEEEcCcccceeeeeeeeCCEEEEEEccCCeEEEEeCCCCcEeEEEeccCccccCCcccc
Q 003800 57 VVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLV 136 (794)
Q Consensus 57 yv~t~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~l~~~~~s~~~~~~ 136 (794)
++--.+|-+.-.+ .+.++|......+ ....-.+.+..+| .+..+|. +|+.+|........
T Consensus 23 l~~q~DgNLvly~--~~~~vW~ant~~~--------~~~~~~L~l~~dG-nLvL~d~-~~~~vWss~t~~~~-------- 82 (105)
T 4h3o_A 23 FIMQDDCNLVLYD--HSTSTWASNTEIG--------GKSGCSAVLQSDG-NFVVYDS-SGRSLWASHSTRGS-------- 82 (105)
T ss_dssp EEECTTSCEEEEE--TTEEEEECCCCCT--------TCCSCEEEECTTS-CEEEECT-TCCEEEECCCCCCS--------
T ss_pred EEECCCCeEEEEE--CCEEEEEecCCCC--------CCccEEEEEeCCc-cEEEECC-CcEEEEEecCCCCC--------
Q ss_pred ccccccccCCeEEEE-ECCEEEEEECCCCcEEEE
Q 003800 137 PTNLKVDKDSLILVS-SKGCLHAVSSIDGEILWT 169 (794)
Q Consensus 137 ~~~~~~~~~~~V~V~-~~g~l~ald~~tG~~~W~ 169 (794)
....+++ .+|.|.-+ |..+|+
T Consensus 83 --------~~~~l~L~ddGNlVly----~~~~W~ 104 (105)
T 4h3o_A 83 --------GNYILILQDDGNVIIY----GSDIWS 104 (105)
T ss_dssp --------SCEEEEECTTSCEEEE----ESEEEE
T ss_pred --------CCEEEEEeCCCeEEEE----CCcEec
No 332
>3a0c_A Mannose/sialic acid-binding lectin; beta-prism II, sugar binding protein; 2.00A {Polygonatum cyrtonema} PDB: 3a0d_A* 3a0e_A*
Probab=30.84 E-value=97 Score=26.85 Aligned_cols=59 Identities=17% Similarity=0.384 Sum_probs=35.0
Q ss_pred eCCEEEEEEccCCeEEEEeCCCCcEeEEEeccCccccCCccccccccccccCCeEEEEECCEEEEEECCCCcEEEEEe
Q 003800 94 LGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSSKGCLHAVSSIDGEILWTRD 171 (794)
Q Consensus 94 ~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~l~~~~~s~~~~~~~~~~~~~~~~~V~V~~~g~l~ald~~tG~~~W~~~ 171 (794)
.+...+.+..+| .+..+| .|+.+|......... ...+.+..+|.|.-+|. +|.++|+-.
T Consensus 19 ~~~~~l~~~~dG-nlvl~~--~~~~vW~sn~~~~~~---------------~~~l~l~~dGNLVl~~~-~~~~~W~S~ 77 (110)
T 3a0c_A 19 GPSYRLIMQGDC-NFVLYD--SGKPVWASNTGGLGS---------------GCRLTLHNNGNLVIYDQ-SNRVIWQTK 77 (110)
T ss_dssp TTTEEEEECTTS-CEEEEE--TTEEEEECCCTTSCS---------------SCEEEECTTSCEEEECT-TCCEEEECC
T ss_pred CCCEEEEEcCCC-cEEEEE--CCEEEEECCCCCCCC---------------cEEEEEeCCCCEEEECC-CCcEEEecC
Confidence 344455555554 566777 489999876532110 11222235777777774 688999854
No 333
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=30.82 E-value=1.8e+02 Score=32.34 Aligned_cols=63 Identities=11% Similarity=0.085 Sum_probs=41.3
Q ss_pred ccCCCEEEEEeCCCEEEEEECcCCccceEEEcCcccceeeeeeeeCCEEEEEEccCCeEEEEeC
Q 003800 50 KTGRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNL 113 (794)
Q Consensus 50 ~~~~~~Vyv~t~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~ 113 (794)
+...+.||+.|..|.+.-.|..||..+.+........+...+-...++++.|... |+|.....
T Consensus 267 s~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~-GqVl~v~v 329 (494)
T 1bpo_A 267 SEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRK-GQVLSVCV 329 (494)
T ss_dssp ETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETT-CEEEEEEE
T ss_pred cccCCEEEEEecCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccC-ceEEEEEE
Confidence 3457789999999999999999999999988876522111111124455555533 34554444
No 334
>1xd5_A Gastrodianin-1, antifungal protein GAFP-1; monocot mannose binding lectin, monomer, homogeneous beta- sheet; 2.00A {Gastrodia elata} SCOP: b.78.1.1 PDB: 1xd6_A
Probab=30.43 E-value=2.6e+02 Score=23.97 Aligned_cols=51 Identities=14% Similarity=0.287 Sum_probs=29.6
Q ss_pred eCCCEEEEEECcCCccceEEEcCcccceeeeeeeeCCEEEEEEccCCeEEEEeCCCCcEeEEEec
Q 003800 60 TEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFL 124 (794)
Q Consensus 60 t~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~l 124 (794)
..+|.+.-.+. |.++|....... .....+.+..+ +.+..+| +|..+|+...
T Consensus 26 ~~dgnlvl~~~--~~~vW~sn~~~~---------~~~~~l~l~~~-GNLvl~d--~~~~~W~S~~ 76 (112)
T 1xd5_A 26 QNDCNLVLYDN--NRAVWASGTNGK---------ASGCVLKMQND-GNLVIYS--GSRAIWASNT 76 (112)
T ss_dssp CTTSCEEEEET--TEEEEECCCTTS---------CSSEEEEECTT-SCEEEEE--TTEEEEECCC
T ss_pred cCCCcEEEEEC--CEEEEeCCCcCC---------CCCEEEEEeCC-CCEEEEc--CCEEEEECCc
Confidence 34444444554 789998654321 01123444544 4677778 7899999653
No 335
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=30.30 E-value=4.3e+02 Score=26.47 Aligned_cols=112 Identities=8% Similarity=0.092 Sum_probs=62.5
Q ss_pred eeeeeeee-CCEEEEEEccCCeEEEEeCCCCcEeEEEeccCccccCCccccccccccccCCeEEEEE--CCEEEEEECCC
Q 003800 87 VDGIDIAL-GKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSS--KGCLHAVSSID 163 (794)
Q Consensus 87 i~~l~~~~-g~~~V~Vs~~g~~v~A~d~~tG~llWe~~l~~~~~s~~~~~~~~~~~~~~~~~V~V~~--~g~l~ald~~t 163 (794)
+.++.... ++.+.+|+...+.|+.+|+. |+++.+..+.+.. +.+-+ +...++.+++.. +++++.++..+
T Consensus 29 lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~---D~EGI----a~~~~g~~~vs~E~~~~l~~~~v~~ 100 (255)
T 3qqz_A 29 ISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVK---DLETI----EYIGDNQFVISDERDYAIYVISLTP 100 (255)
T ss_dssp EEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCS---SEEEE----EECSTTEEEEEETTTTEEEEEEECT
T ss_pred cceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCC---ChHHe----EEeCCCEEEEEECCCCcEEEEEcCC
Confidence 44553322 34455556667899999997 9999888875421 22222 223355555553 77888887654
Q ss_pred CcEEEEEeccC-------cceeeeeEEEEecCCEEEEEEecCCceeEEEEEE
Q 003800 164 GEILWTRDFAA-------ESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQIN 208 (794)
Q Consensus 164 G~~~W~~~~~~-------~~~~~~~~v~s~~~~~vyv~~~~g~~~~~v~ald 208 (794)
....|...... .....+.+......+.+|++.-.+ ...++.++
T Consensus 101 ~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~--p~~i~~~~ 150 (255)
T 3qqz_A 101 NSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKN--PIEVYKVN 150 (255)
T ss_dssp TCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESS--SEEEEEEE
T ss_pred CCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcC--CceEEEEc
Confidence 44455332221 111124443334566888865443 23677777
No 336
>3a0c_A Mannose/sialic acid-binding lectin; beta-prism II, sugar binding protein; 2.00A {Polygonatum cyrtonema} PDB: 3a0d_A* 3a0e_A*
Probab=27.68 E-value=2.9e+02 Score=23.66 Aligned_cols=54 Identities=15% Similarity=0.313 Sum_probs=32.2
Q ss_pred EeCCCEEEEEECcCCccceEEEcCcccceeeeeeeeCCEEEEEEccCCeEEEEeCCCCcEeEEEecc
Q 003800 59 STEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLR 125 (794)
Q Consensus 59 ~t~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~l~ 125 (794)
-..+|.+.-.| .|.++|........ ....+.+..+ |.+..+|. +|+.+|+....
T Consensus 26 ~~~dGnlvl~~--~~~~vW~sn~~~~~---------~~~~l~l~~d-GNLVl~~~-~~~~~W~S~t~ 79 (110)
T 3a0c_A 26 MQGDCNFVLYD--SGKPVWASNTGGLG---------SGCRLTLHNN-GNLVIYDQ-SNRVIWQTKTN 79 (110)
T ss_dssp ECTTSCEEEEE--TTEEEEECCCTTSC---------SSCEEEECTT-SCEEEECT-TCCEEEECCCC
T ss_pred EcCCCcEEEEE--CCEEEEECCCCCCC---------CcEEEEEeCC-CCEEEECC-CCcEEEecCCC
Confidence 34555555566 48899986543221 1123444544 46777775 78999996543
No 337
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=27.57 E-value=4.2e+02 Score=26.48 Aligned_cols=29 Identities=21% Similarity=0.231 Sum_probs=19.0
Q ss_pred ccCCeEEEEECCEEEEEEC-CCCcEEEEEe
Q 003800 143 DKDSLILVSSKGCLHAVSS-IDGEILWTRD 171 (794)
Q Consensus 143 ~~~~~V~V~~~g~l~ald~-~tG~~~W~~~ 171 (794)
+.++.+++.++|.|++.++ ++|...|...
T Consensus 96 D~~G~LYav~dG~iyr~~pP~~~~~~Wl~~ 125 (236)
T 1tl2_A 96 DPNGYLYAVSKDKLYKASPPQSDTDNWIAR 125 (236)
T ss_dssp CTTSCEEEEETTEEEEESCCCSTTCCHHHH
T ss_pred CCCCCEEEeCCCEEEEeCCCcCCCCceecc
Confidence 3356666667888888876 3566677544
No 338
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=25.40 E-value=1e+03 Score=29.32 Aligned_cols=159 Identities=8% Similarity=0.066 Sum_probs=82.1
Q ss_pred CCEEEEEeCCCEEEEEECcCCccceEEEcCcccceeeeeeeeCCEEEEEEccCCeEEEEeCCCCcEeE--EEeccCcccc
Q 003800 53 RKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVW--ESFLRGSKHS 130 (794)
Q Consensus 53 ~~~Vyv~t~~g~l~ALn~~tG~ivWR~~l~~~~~i~~l~~~~g~~~V~Vs~~g~~v~A~d~~tG~llW--e~~l~~~~~s 130 (794)
++.++-.|.+++ .-++...+..+.+-..+.+..|... +..+..|+++. |+.+..++..+|++.= +..+..+..+
T Consensus 483 ~~~ivQVt~~~I-rli~~~~~~~~~~w~~p~~~~I~~A--s~n~~~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evsc 558 (1158)
T 3ei3_A 483 HQQLIQITSASV-RLVSQEPKALVSEWKEPQAKNISVA--SCNSSQVVVAV-GRALYYLQIHPQELRQISHTEMEHEVAC 558 (1158)
T ss_dssp TTEEEEEESSCE-EEEESSSCCEEEEECCTTCCCCCEE--EECSSEEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEE
T ss_pred CCeEEEEecCEE-EEEECCCCeEEEEEECCCCCEEEEE--EeCCCEEEEEE-CCEEEEEEeeCCceeeecccCCCCceEE
Confidence 445666666664 4566666655533223332234322 34445566664 5688888887775431 1222222211
Q ss_pred CCccccccccccccCCeEEEE-E-CCEEEEEECCCCcEEEEEeccCcceeeeeEEEEecCCEEEE-EEecCCceeEEEEE
Q 003800 131 KPLLLVPTNLKVDKDSLILVS-S-KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYV-VGYAGSSQFHAYQI 207 (794)
Q Consensus 131 ~~~~~~~~~~~~~~~~~V~V~-~-~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~s~~~~~vyv-~~~~g~~~~~v~al 207 (794)
- .+.+.+........++|. . ++.+.-++..+-++++...++.... |..+....-++..|. ++...| .+.-+.+
T Consensus 559 l--~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~-p~si~l~~~~~~~~L~igl~dG-~l~~~~~ 634 (1158)
T 3ei3_A 559 L--DITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEII-PRSILMTTFESSHYLLCALGDG-ALFYFGL 634 (1158)
T ss_dssp E--ECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCC-EEEEEEEEETTEEEEEEEETTS-EEEEEEE
T ss_pred E--EeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCC-CcEEEEEEeCCCcEEEEEeCCC-eEEEEEE
Confidence 0 011000000112455555 3 8999999999999999988865332 444332222344443 333332 2333567
Q ss_pred EcCCCceeeeee
Q 003800 208 NAMNGELLNHET 219 (794)
Q Consensus 208 d~~tG~~~w~~~ 219 (794)
|..||+....++
T Consensus 635 d~~tg~l~d~r~ 646 (1158)
T 3ei3_A 635 NIETGLLSDRKK 646 (1158)
T ss_dssp CTTTCCEEEEEE
T ss_pred cCCCCcccccee
Confidence 888888876543
No 339
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=24.28 E-value=5.7e+02 Score=25.92 Aligned_cols=178 Identities=11% Similarity=0.151 Sum_probs=0.0
Q ss_pred eeecccccEeeEEeccCc-eeeeeeeeeccCCCEEEEEeCCCEEEEEECcCCccceEEEc---CcccceeeeeeeeCCEE
Q 003800 23 LYEDQVGLMDWHQQYIGK-VKHAVFHTQKTGRKRVVVSTEENVIASLDLRHGEIFWRHVL---GINDVVDGIDIALGKYV 98 (794)
Q Consensus 23 l~edqvG~~dW~~~~vG~-~~~~~f~~~~~~~~~Vyv~t~~g~l~ALn~~tG~ivWR~~l---~~~~~i~~l~~~~g~~~ 98 (794)
+|....|-.-|+...... .....+.......+.+|++.+.|.|+. ..||-.-|+... ..+..+..+.....+.+
T Consensus 58 i~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~g~i~~--S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~ 135 (327)
T 2xbg_A 58 LMETRDGGQTWEPRTLVLDHSDYRFNSVSFQGNEGWIVGEPPIMLH--TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSA 135 (327)
T ss_dssp EEEESSTTSSCEECCCCCSCCCCEEEEEEEETTEEEEEEETTEEEE--ESSTTSSCEECCCCTTCSSCEEEEEEEETTEE
T ss_pred EEEeCCCCCCCeECCCCCCCCCccEEEEEecCCeEEEEECCCeEEE--ECCCCCCceECccccCCCCCeEEEEEECCCCE
Q ss_pred EEEEccCCeEEEEeCCCCcEeEEEeccCccccCCccccccccccccCCeEEEEE-CCEEEEEECCCCcEEEEEeccCcce
Q 003800 99 ITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSS-KGCLHAVSSIDGEILWTRDFAAESV 177 (794)
Q Consensus 99 V~Vs~~g~~v~A~d~~tG~llWe~~l~~~~~s~~~~~~~~~~~~~~~~~V~V~~-~g~l~ald~~tG~~~W~~~~~~~~~ 177 (794)
++++..+...+..| |-.-|+....... .....+ ....++.+++.. +|.+++-+ ..|...|+........
T Consensus 136 ~~~~~~g~v~~S~D---gG~tW~~~~~~~~--~~~~~~----~~~~~~~~~~~g~~G~~~~S~-d~gG~tW~~~~~~~~~ 205 (327)
T 2xbg_A 136 EMITNVGAIYRTKD---SGKNWQALVQEAI--GVMRNL----NRSPSGEYVAVSSRGSFYSTW-EPGQTAWEPHNRTTSR 205 (327)
T ss_dssp EEEETTCCEEEESS---TTSSEEEEECSCC--CCEEEE----EECTTSCEEEEETTSSEEEEE-CTTCSSCEEEECCSSS
T ss_pred EEEeCCccEEEEcC---CCCCCEEeecCCC--cceEEE----EEcCCCcEEEEECCCcEEEEe-CCCCCceeECCCCCCC
Q ss_pred eeeeEEEEecCCEEEEEEecCCceeEEEEEEcCCCceeeee
Q 003800 178 EVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHE 218 (794)
Q Consensus 178 ~~~~~v~s~~~~~vyv~~~~g~~~~~v~ald~~tG~~~w~~ 218 (794)
....+. ...++.+|+++..| ...+...+|-..|+.
T Consensus 206 ~~~~~~-~~~~g~~~~~~~~G-----~~~~s~~D~G~tW~~ 240 (327)
T 2xbg_A 206 RLHNMG-FTPDGRLWMIVNGG-----KIAFSDPDNSENWGE 240 (327)
T ss_dssp CEEEEE-ECTTSCEEEEETTT-----EEEEEETTEEEEECC
T ss_pred ccceeE-ECCCCCEEEEeCCc-----eEEEecCCCCCeeEe
No 340
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=23.30 E-value=8.5e+02 Score=27.56 Aligned_cols=186 Identities=11% Similarity=0.010 Sum_probs=89.4
Q ss_pred CCCEEEEEeC-CCEEEEEECcCCccceEEEcCcc-cceeeeeeeeCCEEEEEEc-cCCeEEEEeCCCCcEeEEEeccCcc
Q 003800 52 GRKRVVVSTE-ENVIASLDLRHGEIFWRHVLGIN-DVVDGIDIALGKYVITLSS-DGSTLRAWNLPDGQMVWESFLRGSK 128 (794)
Q Consensus 52 ~~~~Vyv~t~-~g~l~ALn~~tG~ivWR~~l~~~-~~i~~l~~~~g~~~V~Vs~-~g~~v~A~d~~tG~llWe~~l~~~~ 128 (794)
.+++||++.- .+.|..+++..+ ..+...+..+ ....++.+.-.++.+|++. ..+.|...|+. |+.+=. +....
T Consensus 50 ~~~~ly~sD~~~~~I~r~~~~g~-~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~d-G~~~~~--l~~~~ 125 (619)
T 3s94_A 50 SHGLIYWSDVSEEAIKRTEFNKT-ESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLD-GSLRKV--LFWQE 125 (619)
T ss_dssp TTTEEEEEETTTTEEEEEEC------CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCSCEE--EECSS
T ss_pred CCCEEEEEECCCCeEEEEEccCC-CceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECC-CCCEEE--EEeCC
Confidence 3778998875 578888887544 3344444433 2233553222234455443 45688888874 543211 11111
Q ss_pred ccCCcccccccccccc-CCeEEEEE---CCEEEEEECCCCcEEEEEeccCcceeeeeEEEEecCCEEEEEEecCCceeEE
Q 003800 129 HSKPLLLVPTNLKVDK-DSLILVSS---KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHA 204 (794)
Q Consensus 129 ~s~~~~~~~~~~~~~~-~~~V~V~~---~g~l~ald~~tG~~~W~~~~~~~~~~~~~~v~s~~~~~vyv~~~~g~~~~~v 204 (794)
+..+- .++++. .+.+|+.. .+.+.+.+.+ |..+=..-..... .|..+......+.+|++....+ ++
T Consensus 126 l~~P~-----~Iavdp~~g~ly~tD~g~~~~I~r~~~d-G~~~~~l~~~~~~-~P~Glald~~~~~LY~aD~~~~---~I 195 (619)
T 3s94_A 126 LDQPR-----AIALDPSSGFMYWTDWGEVPKIERAGMD-GSSRFIIINSEIY-WPNGLTLDYEEQKLYWADAKLN---FI 195 (619)
T ss_dssp CSCCC-----CEEEETTTTEEEEEECSSSCEEEEEETT-SCSCEEEECSSCS-SEEEEEEETTTTEEEEEETTTC---CE
T ss_pred CCCCc-----eEEEecCCCeEEEeccCCCCEEEEEECC-CCceEEEEeCCCC-CCcEEEEEccCCEEEEEeCCCC---eE
Confidence 10111 112222 35566653 3566666643 3211111111101 1333432234788998653332 67
Q ss_pred EEEEcCCCceeeeee---eecccCccCceEEEcCcEEEEEECCCCeEEEEEeecce
Q 003800 205 YQINAMNGELLNHET---AAFSGGFVGDVALVSSDTLVTLDTTRSILVTVSFKNRK 257 (794)
Q Consensus 205 ~ald~~tG~~~w~~~---v~~~~~~s~~~~~vg~~~lv~~d~~~g~L~v~~l~sg~ 257 (794)
..+|.. |....... +..|.+ +- +..+.++|+|..++.+.+++..+|+
T Consensus 196 ~~~~~d-G~~~~~~~~~~~~~P~g----i~-~~~~~ly~td~~~~~V~~~d~~tg~ 245 (619)
T 3s94_A 196 HKSNLD-GTNRQAVVKGSLPHPFA----LT-LFEDILYWTDWSTHSILACNKYTGE 245 (619)
T ss_dssp EEESSS-CCEEC---------CCC----EE-ESSSEEEEECTTTCSEEEEESSSCC
T ss_pred EEecCC-CCccEEEEeCCCCCceE----EE-EeCCEEEEecCCCCEEEEEECCCCc
Confidence 777774 43333221 111221 22 3455788999888999999988876
No 341
>1xd5_A Gastrodianin-1, antifungal protein GAFP-1; monocot mannose binding lectin, monomer, homogeneous beta- sheet; 2.00A {Gastrodia elata} SCOP: b.78.1.1 PDB: 1xd6_A
Probab=20.16 E-value=2.5e+02 Score=24.12 Aligned_cols=57 Identities=23% Similarity=0.449 Sum_probs=34.5
Q ss_pred eCCEEEEEEccCCeEEEEeCCCCcEeEEEeccCccccCCccccccccccccCCeEEEE-ECCEEEEEECCCCcEEEEEe
Q 003800 94 LGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVS-SKGCLHAVSSIDGEILWTRD 171 (794)
Q Consensus 94 ~g~~~V~Vs~~g~~v~A~d~~tG~llWe~~l~~~~~s~~~~~~~~~~~~~~~~~V~V~-~~g~l~ald~~tG~~~W~~~ 171 (794)
.+...+.+..+| .+..++. |+.+|........ ....+.+ .+|.|...| +|.++|+-.
T Consensus 18 ~~~~~L~~~~dg-nlvl~~~--~~~vW~sn~~~~~----------------~~~~l~l~~~GNLvl~d--~~~~~W~S~ 75 (112)
T 1xd5_A 18 EGGYLFIIQNDC-NLVLYDN--NRAVWASGTNGKA----------------SGCVLKMQNDGNLVIYS--GSRAIWASN 75 (112)
T ss_dssp ETTEEEEECTTS-CEEEEET--TEEEEECCCTTSC----------------SSEEEEECTTSCEEEEE--TTEEEEECC
T ss_pred CCCEEEEEcCCC-cEEEEEC--CEEEEeCCCcCCC----------------CCEEEEEeCCCCEEEEc--CCEEEEECC
Confidence 445556556554 4556665 7899987643210 1122333 578888888 688999854
Done!