BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003801
(794 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ORG|A Chain A, Crystal Structure Of A Eukaryotic Clc Transporter
pdb|3ORG|B Chain B, Crystal Structure Of A Eukaryotic Clc Transporter
pdb|3ORG|C Chain C, Crystal Structure Of A Eukaryotic Clc Transporter
pdb|3ORG|D Chain D, Crystal Structure Of A Eukaryotic Clc Transporter
Length = 632
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 73/165 (44%), Gaps = 11/165 (6%)
Query: 134 LANKFGMAFLSFSIPNLVLTLFASIVTATVAPVAAGSGIPEVKAYLNGV--DAPGILSFR 191
LA +F ++ + + + L L ++ A ++ A GSG+P++K+ L+G L R
Sbjct: 45 LAGRFA-GYILYVVSGVALCLLSTFWCAVLSTEAEGSGLPQMKSILSGFYDKMRSALELR 103
Query: 192 TLVIKIIGSISAVSSSLLVGKAGPMVHTGACVASLLGQGGSKKYGLTWKWLRFFKNXXXX 251
L K +G I A+ L VG GP VH +A + G K T + LR
Sbjct: 104 VLFAKALGLICAIGGGLPVGWEGPNVHIACIIAHQFYRLGVFKELCTDRALRL------- 156
Query: 252 XXFVTCGSXXXXXXXXXXPVGGLLFAIEEMASWWRSALLWRAFFT 296
+ P+GG+L++IE +AS++ W+ +
Sbjct: 157 -QTLAAACAVGLASSFGAPLGGVLYSIETIASFYLVQAFWKGVLS 200
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 65/256 (25%), Positives = 101/256 (39%), Gaps = 14/256 (5%)
Query: 444 TNDDAIRNLFSKDTDKEFQHSSMLIFFVTCFSLSVLSYGIVAPAGLFVPAIVTGASYGRF 503
T +D + + TD F + +++ + F L LS G+ PAG+FVP+ + GA +GR
Sbjct: 300 TINDLFKAVPLYQTD-HFGWTELILMPIIKFILVALSIGLPLPAGVFVPSFLIGAGFGRL 358
Query: 504 VG--MLVGSHSNLNHGLYAVLGAASFLGGSMRMTVSLCXXXXXXXXXXXXXXXXXXXXXX 561
G M V + + G YAV+GAA+F G R +S
Sbjct: 359 YGELMRVVFGNAIVPGSYAVVGAAAFTAGVTR-ALSCAVIIFEVTGQIRHLVPVLISVLL 417
Query: 562 SKTVADAFNGNIYDLIMKAKGFPY---LETHVEPYMRQLTVGDVVTAPLQLFHGIEKAGN 618
+ V +AFN ++Y+ ++ K PY L P M + + LF E
Sbjct: 418 AVIVGNAFNRSLYETLVLMKHLPYMPILRRDRSPEMTAREIMHPIEGEPHLFPDSEPQHI 477
Query: 619 VVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNPTV-NDAFSQ 677
+ + FPVID N L G I R ++ L + P P +
Sbjct: 478 KGILEKFPNRLVFPVIDANGY-----LLGAISRKEIVDRL-QHVLEDVPEPIAGHRTLVL 531
Query: 678 FSAVDFAKRGSGNGDK 693
A D ++ G D+
Sbjct: 532 LDAADLSENIEGLVDE 547
>pdb|1KPL|A Chain A, Crystal Structure Of The Clc Chloride Channel From S.
Typhimurium
pdb|1KPL|B Chain B, Crystal Structure Of The Clc Chloride Channel From S.
Typhimurium
pdb|1KPL|C Chain C, Crystal Structure Of The Clc Chloride Channel From S.
Typhimurium
pdb|1KPL|D Chain D, Crystal Structure Of The Clc Chloride Channel From S.
Typhimurium
Length = 473
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 68/148 (45%), Gaps = 20/148 (13%)
Query: 164 APVAAGSGIPEVKAYLNGVDAPGILSFRTLVIKIIGSISAVSSSLLVGKAGPMVHTGACV 223
AP A GSGIPE++ L + + +R L +K IG + + + +++G+ GP V G +
Sbjct: 101 APEAGGSGIPEIEGALEELRP--VRWWRVLPVKFIGGMGTLGAGMVLGREGPTVQIGGNL 158
Query: 224 ASLLGQGGSKKYGLTWKWLRFF--KNXXXXXXFVTCGSXXXXXXXXXXPVGGLLFAIEEM 281
++ L F ++ + G+ P+ G+LF IEEM
Sbjct: 159 GRMV--------------LDVFRMRSAEARHTLLATGAAAGLSAAFNAPLAGILFIIEEM 204
Query: 282 ASWWRSALL-WRAFFTTAIV-AILLRAF 307
+R L+ +A FT I+ +I+ R F
Sbjct: 205 RPQFRYNLISIKAVFTGVIMSSIVFRIF 232
Score = 32.7 bits (73), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 3/86 (3%)
Query: 451 NLFSKDTDKEFQHSSMLIFFVTCFSLSVLSYGIVAPAGLFVPAIVTGASYGRFVGM---L 507
NL F +L F+T ++L + AP G+F P + G G GM +
Sbjct: 318 NLIPIAAAGNFSVGLLLFIFITRVVTTLLCFSSGAPGGIFAPMLALGTLLGTAFGMAAAV 377
Query: 508 VGSHSNLNHGLYAVLGAASFLGGSMR 533
+ +L G +A+ G + + S+R
Sbjct: 378 LFPQYHLEAGTFAIAGMGALMAASVR 403
>pdb|3ND0|A Chain A, X-Ray Crystal Structure Of A Slow Cyanobacterial Cl-H+
ANTIPORTER
pdb|3ND0|B Chain B, X-Ray Crystal Structure Of A Slow Cyanobacterial Cl-H+
ANTIPORTER
pdb|3Q17|A Chain A, Structure Of A Slow Clc Cl-H+ ANTIPORTER FROM A
CYANOBACTERIUM IN Bromide
pdb|3Q17|B Chain B, Structure Of A Slow Clc Cl-H+ ANTIPORTER FROM A
CYANOBACTERIUM IN Bromide
Length = 466
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 54/121 (44%), Gaps = 12/121 (9%)
Query: 118 VENIAGTKFVVTSNMMLANKFGMAFLSFSIPNLVLTLFASIVTATVA----------PVA 167
+ + G F N ML + +A + IP L + A I VA P
Sbjct: 41 ITGVLGAGFKSAVNNMLQWRSQLAQILAPIPPLAWLVTALISGGMVALSFWLMKRFAPDT 100
Query: 168 AGSGIPEVKAYLNGVDAPGILSFRTLVIKIIGSISAVSSSLLVGKAGPMVHTGACVASLL 227
+GSGIP+++ +L G P + R L IK++G ++ + +L G GP + G + +
Sbjct: 101 SGSGIPQIEGHLEG-KLPLVWQ-RVLPIKLVGGFLSLGAGMLAGFEGPTIQMGGSIGQMT 158
Query: 228 G 228
G
Sbjct: 159 G 159
>pdb|1OTT|A Chain A, Structure Of The Escherichia Coli Clc Chloride Channel
E148a Mutant And Fab Complex
pdb|1OTT|B Chain B, Structure Of The Escherichia Coli Clc Chloride Channel
E148a Mutant And Fab Complex
pdb|2H2S|A Chain A, Crystal Structure Of E148a Mutant Of Clc-Ec1 In Secn-
pdb|2H2S|B Chain B, Crystal Structure Of E148a Mutant Of Clc-Ec1 In Secn-
pdb|4FG6|A Chain A, Structure Of Ecclc E148a Mutant In Glutamate
pdb|4FG6|B Chain B, Structure Of Ecclc E148a Mutant In Glutamate
Length = 465
Score = 37.0 bits (84), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 73/172 (42%), Gaps = 26/172 (15%)
Query: 151 VLTLFASIVTATVAPVAAGSGIPEVKAYLNGVDAPGILSFRTLVIKIIGSISAVSSSLLV 210
VL +F + AP A GSGIPE++ L D + +R L +K G + + +++
Sbjct: 88 VLAMFGYFLVRKYAPEAGGSGIPEIEGALE--DQRPVRWWRVLPVKFFGGLGTLGGGMVL 145
Query: 211 GKAGPMVHTGACVASLLGQGGSKKYGLTWKWLRFF--KNXXXXXXFVTCGSXXXXXXXXX 268
G+AGP V G + ++ L F K + G+
Sbjct: 146 GRAGPTVQIGGNIGRMV--------------LDIFRLKGDEARHTLLATGAAAGLAAAFN 191
Query: 269 XPVGGLLFAIEEMASWWRSALL-WRAFFTTAIVAILLR-------AFIDICK 312
P+ G+LF IEEM +R L+ +A F I++ ++ A ID+ K
Sbjct: 192 APLAGILFIIEEMRPQFRYTLISIKAVFIGVIMSTIMYRIFNHEVALIDVGK 243
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 3/86 (3%)
Query: 451 NLFSKDTDKEFQHSSMLIFFVTCFSLSVLSYGIVAPAGLFVPAIVTGASYGRFVGMLVGS 510
NL T F ++ FV ++L + AP G+F P + G G GM+
Sbjct: 318 NLIPIATAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVE 377
Query: 511 ---HSNLNHGLYAVLGAASFLGGSMR 533
+L G +A+ G + L S+R
Sbjct: 378 LFPQYHLEAGTFAIAGMGALLAASIR 403
>pdb|3DET|A Chain A, Structure Of The E418a, Y445a Doubly Ungated Mutant Of
E.Coli Clc_ec1, Cl-H+ ANTIPORTER
pdb|3DET|B Chain B, Structure Of The E418a, Y445a Doubly Ungated Mutant Of
E.Coli Clc_ec1, Cl-H+ ANTIPORTER
Length = 473
Score = 37.0 bits (84), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 73/172 (42%), Gaps = 26/172 (15%)
Query: 151 VLTLFASIVTATVAPVAAGSGIPEVKAYLNGVDAPGILSFRTLVIKIIGSISAVSSSLLV 210
VL +F + AP A GSGIPE++ L D + +R L +K G + + +++
Sbjct: 88 VLAMFGYFLVRKYAPEAGGSGIPEIEGALE--DQRPVRWWRVLPVKFFGGLGTLGGGMVL 145
Query: 211 GKAGPMVHTGACVASLLGQGGSKKYGLTWKWLRFF--KNXXXXXXFVTCGSXXXXXXXXX 268
G+AGP V G + ++ L F K + G+
Sbjct: 146 GRAGPTVQIGGNIGRMV--------------LDIFRLKGDEARHTLLATGAAAGLAAAFN 191
Query: 269 XPVGGLLFAIEEMASWWRSALL-WRAFFTTAIVAILLR-------AFIDICK 312
P+ G+LF IEEM +R L+ +A F I++ ++ A ID+ K
Sbjct: 192 APLAGILFIIEEMRPQFRYTLISIKAVFIGVIMSTIMYRIFNHEVALIDVGK 243
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 3/86 (3%)
Query: 451 NLFSKDTDKEFQHSSMLIFFVTCFSLSVLSYGIVAPAGLFVPAIVTGASYGRFVGMLVGS 510
NL T F ++ FV ++L + AP G+F P + G G GM+
Sbjct: 318 NLIPIATAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVE 377
Query: 511 ---HSNLNHGLYAVLGAASFLGGSMR 533
+L G +A+ G + L S+R
Sbjct: 378 LFPQYHLEAGTFAIAGMGALLAASIR 403
>pdb|2EXY|A Chain A, Crystal Structure Of The E148q Mutant Of Ecclc, Fab
Complexed In Absence Of Bound Ions
pdb|2EXY|B Chain B, Crystal Structure Of The E148q Mutant Of Ecclc, Fab
Complexed In Absence Of Bound Ions
Length = 473
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 72/172 (41%), Gaps = 26/172 (15%)
Query: 151 VLTLFASIVTATVAPVAAGSGIPEVKAYLNGVDAPGILSFRTLVIKIIGSISAVSSSLLV 210
VL +F + AP A GSGIPE++ L D + +R L +K G + + +++
Sbjct: 88 VLAMFGYFLVRKYAPEAGGSGIPEIEGALE--DQRPVRWWRVLPVKFFGGLGTLGGGMVL 145
Query: 211 GKAGPMVHTGACVASLLGQGGSKKYGLTWKWLRFF--KNXXXXXXFVTCGSXXXXXXXXX 268
G+ GP V G + ++ L F K + G+
Sbjct: 146 GRQGPTVQIGGNIGRMV--------------LDIFRLKGDEARHTLLATGAAAGLAAAFN 191
Query: 269 XPVGGLLFAIEEMASWWRSALL-WRAFFTTAIVAILLR-------AFIDICK 312
P+ G+LF IEEM +R L+ +A F I++ ++ A ID+ K
Sbjct: 192 APLAGILFIIEEMRPQFRYTLISIKAVFIGVIMSTIMYRIFNHEVALIDVGK 243
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 3/86 (3%)
Query: 451 NLFSKDTDKEFQHSSMLIFFVTCFSLSVLSYGIVAPAGLFVPAIVTGASYGRFVGMLVGS 510
NL T F ++ FV ++L + AP G+F P + G G GM+
Sbjct: 318 NLIPIATAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVE 377
Query: 511 ---HSNLNHGLYAVLGAASFLGGSMR 533
+L G +A+ G + L S+R
Sbjct: 378 LFPQYHLEAGTFAIAGMGALLAASIR 403
>pdb|2HT2|A Chain A, Structure Of The Escherichia Coli Clc Chloride Channel
Y445h Mutant And Fab Complex
pdb|2HT2|B Chain B, Structure Of The Escherichia Coli Clc Chloride Channel
Y445h Mutant And Fab Complex
Length = 473
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 72/172 (41%), Gaps = 26/172 (15%)
Query: 151 VLTLFASIVTATVAPVAAGSGIPEVKAYLNGVDAPGILSFRTLVIKIIGSISAVSSSLLV 210
VL +F + AP A GSGIPE++ L D + +R L +K G + + +++
Sbjct: 88 VLAMFGYFLVRKYAPEAGGSGIPEIEGALE--DQRPVRWWRVLPVKFFGGLGTLGGGMVL 145
Query: 211 GKAGPMVHTGACVASLLGQGGSKKYGLTWKWLRFF--KNXXXXXXFVTCGSXXXXXXXXX 268
G+ GP V G + ++ L F K + G+
Sbjct: 146 GREGPTVQIGGNIGRMV--------------LDIFRLKGDEARHTLLATGAAAGLAAAFN 191
Query: 269 XPVGGLLFAIEEMASWWRSALL-WRAFFTTAIVAILLR-------AFIDICK 312
P+ G+LF IEEM +R L+ +A F I++ ++ A ID+ K
Sbjct: 192 APLAGILFIIEEMRPQFRYTLISIKAVFIGVIMSTIMYRIFNHEVALIDVGK 243
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 3/86 (3%)
Query: 451 NLFSKDTDKEFQHSSMLIFFVTCFSLSVLSYGIVAPAGLFVPAIVTGASYGRFVGMLVGS 510
NL T F ++ FV ++L + AP G+F P + G G GM+
Sbjct: 318 NLIPIATAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVE 377
Query: 511 ---HSNLNHGLYAVLGAASFLGGSMR 533
+L G +A+ G + L S+R
Sbjct: 378 LFPQYHLEAGTFAIAGMGALLAASIR 403
>pdb|1OTU|A Chain A, Structure Of The Escherichia Coli Clc Chloride Channel
E148q Mutant And Fab Complex
pdb|1OTU|B Chain B, Structure Of The Escherichia Coli Clc Chloride Channel
E148q Mutant And Fab Complex
Length = 465
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 72/172 (41%), Gaps = 26/172 (15%)
Query: 151 VLTLFASIVTATVAPVAAGSGIPEVKAYLNGVDAPGILSFRTLVIKIIGSISAVSSSLLV 210
VL +F + AP A GSGIPE++ L D + +R L +K G + + +++
Sbjct: 88 VLAMFGYFLVRKYAPEAGGSGIPEIEGALE--DQRPVRWWRVLPVKFFGGLGTLGGGMVL 145
Query: 211 GKAGPMVHTGACVASLLGQGGSKKYGLTWKWLRFF--KNXXXXXXFVTCGSXXXXXXXXX 268
G+ GP V G + ++ L F K + G+
Sbjct: 146 GRQGPTVQIGGNIGRMV--------------LDIFRLKGDEARHTLLATGAAAGLAAAFN 191
Query: 269 XPVGGLLFAIEEMASWWRSALL-WRAFFTTAIVAILLR-------AFIDICK 312
P+ G+LF IEEM +R L+ +A F I++ ++ A ID+ K
Sbjct: 192 APLAGILFIIEEMRPQFRYTLISIKAVFIGVIMSTIMYRIFNHEVALIDVGK 243
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 3/86 (3%)
Query: 451 NLFSKDTDKEFQHSSMLIFFVTCFSLSVLSYGIVAPAGLFVPAIVTGASYGRFVGMLVGS 510
NL T F ++ FV ++L + AP G+F P + G G GM+
Sbjct: 318 NLIPIATAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVE 377
Query: 511 ---HSNLNHGLYAVLGAASFLGGSMR 533
+L G +A+ G + L S+R
Sbjct: 378 LFPQYHLEAGTFAIAGMGALLAASIR 403
>pdb|1KPK|A Chain A, Crystal Structure Of The Clc Chloride Channel From E. Coli
pdb|1KPK|B Chain B, Crystal Structure Of The Clc Chloride Channel From E. Coli
pdb|1KPK|C Chain C, Crystal Structure Of The Clc Chloride Channel From E. Coli
pdb|1KPK|D Chain D, Crystal Structure Of The Clc Chloride Channel From E. Coli
pdb|1KPK|E Chain E, Crystal Structure Of The Clc Chloride Channel From E. Coli
pdb|1KPK|F Chain F, Crystal Structure Of The Clc Chloride Channel From E. Coli
pdb|2EXW|A Chain A, Crystal Structure Of A Ecclc-Fab Complex In The Absence Of
Bound Ions
pdb|2EXW|B Chain B, Crystal Structure Of A Ecclc-Fab Complex In The Absence Of
Bound Ions
Length = 473
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 72/172 (41%), Gaps = 26/172 (15%)
Query: 151 VLTLFASIVTATVAPVAAGSGIPEVKAYLNGVDAPGILSFRTLVIKIIGSISAVSSSLLV 210
VL +F + AP A GSGIPE++ L D + +R L +K G + + +++
Sbjct: 88 VLAMFGYFLVRKYAPEAGGSGIPEIEGALE--DQRPVRWWRVLPVKFFGGLGTLGGGMVL 145
Query: 211 GKAGPMVHTGACVASLLGQGGSKKYGLTWKWLRFF--KNXXXXXXFVTCGSXXXXXXXXX 268
G+ GP V G + ++ L F K + G+
Sbjct: 146 GREGPTVQIGGNIGRMV--------------LDIFRLKGDEARHTLLATGAAAGLAAAFN 191
Query: 269 XPVGGLLFAIEEMASWWRSALL-WRAFFTTAIVAILLR-------AFIDICK 312
P+ G+LF IEEM +R L+ +A F I++ ++ A ID+ K
Sbjct: 192 APLAGILFIIEEMRPQFRYTLISIKAVFIGVIMSTIMYRIFNHEVALIDVGK 243
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 3/86 (3%)
Query: 451 NLFSKDTDKEFQHSSMLIFFVTCFSLSVLSYGIVAPAGLFVPAIVTGASYGRFVGMLVGS 510
NL T F ++ FV ++L + AP G+F P + G G GM+
Sbjct: 318 NLIPIATAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVE 377
Query: 511 ---HSNLNHGLYAVLGAASFLGGSMR 533
+L G +A+ G + L S+R
Sbjct: 378 LFPQYHLEAGTFAIAGMGALLAASIR 403
>pdb|4ENE|A Chain A, Structure Of The N- And C-Terminal Trimmed Clc-Ec1 Cl-H+
ANTIPORTER And Fab Complex
pdb|4ENE|B Chain B, Structure Of The N- And C-Terminal Trimmed Clc-Ec1 Cl-H+
ANTIPORTER And Fab Complex
Length = 446
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 72/172 (41%), Gaps = 26/172 (15%)
Query: 151 VLTLFASIVTATVAPVAAGSGIPEVKAYLNGVDAPGILSFRTLVIKIIGSISAVSSSLLV 210
VL +F + AP A GSGIPE++ L D + +R L +K G + + +++
Sbjct: 73 VLAMFGYFLVRKYAPEAGGSGIPEIEGALE--DQRPVRWWRVLPVKFFGGLGTLGGGMVL 130
Query: 211 GKAGPMVHTGACVASLLGQGGSKKYGLTWKWLRFF--KNXXXXXXFVTCGSXXXXXXXXX 268
G+ GP V G + ++ L F K + G+
Sbjct: 131 GREGPTVQIGGNIGRMV--------------LDIFRLKGDEARHTLLATGAAAGLAAAFN 176
Query: 269 XPVGGLLFAIEEMASWWRSALL-WRAFFTTAIVAILLR-------AFIDICK 312
P+ G+LF IEEM +R L+ +A F I++ ++ A ID+ K
Sbjct: 177 APLAGILFIIEEMRPQFRYTLISIKAVFIGVIMSTIMYRIFNHEVALIDVGK 228
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 3/86 (3%)
Query: 451 NLFSKDTDKEFQHSSMLIFFVTCFSLSVLSYGIVAPAGLFVPAIVTGASYGRFVGMLVGS 510
NL T F ++ FV ++L + AP G+F P + G G GM+
Sbjct: 303 NLIPIATAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVE 362
Query: 511 ---HSNLNHGLYAVLGAASFLGGSMR 533
+L G +A+ G + L S+R
Sbjct: 363 LFPQYHLEAGTFAIAGMGALLAASIR 388
>pdb|2HTK|A Chain A, Structure Of The Escherichia Coli Clc Chloride Channel
Y445a Mutant And Fab Complex
pdb|2HTK|B Chain B, Structure Of The Escherichia Coli Clc Chloride Channel
Y445a Mutant And Fab Complex
Length = 473
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 72/172 (41%), Gaps = 26/172 (15%)
Query: 151 VLTLFASIVTATVAPVAAGSGIPEVKAYLNGVDAPGILSFRTLVIKIIGSISAVSSSLLV 210
VL +F + AP A GSGIPE++ L D + +R L +K G + + +++
Sbjct: 88 VLAMFGYFLVRKYAPEAGGSGIPEIEGALE--DQRPVRWWRVLPVKFFGGLGTLGGGMVL 145
Query: 211 GKAGPMVHTGACVASLLGQGGSKKYGLTWKWLRFF--KNXXXXXXFVTCGSXXXXXXXXX 268
G+ GP V G + ++ L F K + G+
Sbjct: 146 GREGPTVQIGGNIGRMV--------------LDIFRLKGDEARHTLLATGAAAGLAAAFN 191
Query: 269 XPVGGLLFAIEEMASWWRSALL-WRAFFTTAIVAILLR-------AFIDICK 312
P+ G+LF IEEM +R L+ +A F I++ ++ A ID+ K
Sbjct: 192 APLAGILFIIEEMRPQFRYTLISIKAVFIGVIMSTIMYRIFNHEVALIDVGK 243
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 3/86 (3%)
Query: 451 NLFSKDTDKEFQHSSMLIFFVTCFSLSVLSYGIVAPAGLFVPAIVTGASYGRFVGMLVGS 510
NL T F ++ FV ++L + AP G+F P + G G GM+
Sbjct: 318 NLIPIATAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVE 377
Query: 511 ---HSNLNHGLYAVLGAASFLGGSMR 533
+L G +A+ G + L S+R
Sbjct: 378 LFPQYHLEAGTFAIAGMGALLAASIR 403
>pdb|1OTS|A Chain A, Structure Of The Escherichia Coli Clc Chloride Channel And
Fab Complex
pdb|1OTS|B Chain B, Structure Of The Escherichia Coli Clc Chloride Channel And
Fab Complex
pdb|2FEE|A Chain A, Structure Of The Cl-H+ EXCHANGER CLC-Ec1 From E.Coli In
Nabr
pdb|2FEE|B Chain B, Structure Of The Cl-H+ EXCHANGER CLC-Ec1 From E.Coli In
Nabr
pdb|2H2P|A Chain A, Crystal Structure Of Clc-Ec1 In Complex With Fab Fragment
In Secn-
pdb|2H2P|B Chain B, Crystal Structure Of Clc-Ec1 In Complex With Fab Fragment
In Secn-
Length = 465
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 72/172 (41%), Gaps = 26/172 (15%)
Query: 151 VLTLFASIVTATVAPVAAGSGIPEVKAYLNGVDAPGILSFRTLVIKIIGSISAVSSSLLV 210
VL +F + AP A GSGIPE++ L D + +R L +K G + + +++
Sbjct: 88 VLAMFGYFLVRKYAPEAGGSGIPEIEGALE--DQRPVRWWRVLPVKFFGGLGTLGGGMVL 145
Query: 211 GKAGPMVHTGACVASLLGQGGSKKYGLTWKWLRFF--KNXXXXXXFVTCGSXXXXXXXXX 268
G+ GP V G + ++ L F K + G+
Sbjct: 146 GREGPTVQIGGNIGRMV--------------LDIFRLKGDEARHTLLATGAAAGLAAAFN 191
Query: 269 XPVGGLLFAIEEMASWWRSALL-WRAFFTTAIVAILLR-------AFIDICK 312
P+ G+LF IEEM +R L+ +A F I++ ++ A ID+ K
Sbjct: 192 APLAGILFIIEEMRPQFRYTLISIKAVFIGVIMSTIMYRIFNHEVALIDVGK 243
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 3/86 (3%)
Query: 451 NLFSKDTDKEFQHSSMLIFFVTCFSLSVLSYGIVAPAGLFVPAIVTGASYGRFVGMLVGS 510
NL T F ++ FV ++L + AP G+F P + G G GM+
Sbjct: 318 NLIPIATAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVE 377
Query: 511 ---HSNLNHGLYAVLGAASFLGGSMR 533
+L G +A+ G + L S+R
Sbjct: 378 LFPQYHLEAGTFAIAGMGALLAASIR 403
>pdb|2HT3|A Chain A, Structure Of The Escherichia Coli Clc Chloride Channel
Y445l Mutant And Fab Complex
pdb|2HT3|B Chain B, Structure Of The Escherichia Coli Clc Chloride Channel
Y445l Mutant And Fab Complex
Length = 473
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 72/172 (41%), Gaps = 26/172 (15%)
Query: 151 VLTLFASIVTATVAPVAAGSGIPEVKAYLNGVDAPGILSFRTLVIKIIGSISAVSSSLLV 210
VL +F + AP A GSGIPE++ L D + +R L +K G + + +++
Sbjct: 88 VLAMFGYFLVRKYAPEAGGSGIPEIEGALE--DQRPVRWWRVLPVKFFGGLGTLGGGMVL 145
Query: 211 GKAGPMVHTGACVASLLGQGGSKKYGLTWKWLRFF--KNXXXXXXFVTCGSXXXXXXXXX 268
G+ GP V G + ++ L F K + G+
Sbjct: 146 GREGPTVQIGGNIGRMV--------------LDIFRLKGDEARHTLLATGAAAGLAAAFN 191
Query: 269 XPVGGLLFAIEEMASWWRSALL-WRAFFTTAIVAILLR-------AFIDICK 312
P+ G+LF IEEM +R L+ +A F I++ ++ A ID+ K
Sbjct: 192 APLAGILFIIEEMRPQFRYTLISIKAVFIGVIMSTIMYRIFNHEVALIDVGK 243
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 3/86 (3%)
Query: 451 NLFSKDTDKEFQHSSMLIFFVTCFSLSVLSYGIVAPAGLFVPAIVTGASYGRFVGMLVGS 510
NL T F ++ FV ++L + AP G+F P + G G GM+
Sbjct: 318 NLIPIATAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVE 377
Query: 511 ---HSNLNHGLYAVLGAASFLGGSMR 533
+L G +A+ G + L S+R
Sbjct: 378 LFPQYHLEAGTFAIAGMGALLAASIR 403
>pdb|2HTL|A Chain A, Structure Of The Escherichia Coli Clc Chloride Channel
Y445f Mutant And Fab Complex
pdb|2HTL|B Chain B, Structure Of The Escherichia Coli Clc Chloride Channel
Y445f Mutant And Fab Complex
Length = 473
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 72/172 (41%), Gaps = 26/172 (15%)
Query: 151 VLTLFASIVTATVAPVAAGSGIPEVKAYLNGVDAPGILSFRTLVIKIIGSISAVSSSLLV 210
VL +F + AP A GSGIPE++ L D + +R L +K G + + +++
Sbjct: 88 VLAMFGYFLVRKYAPEAGGSGIPEIEGALE--DQRPVRWWRVLPVKFFGGLGTLGGGMVL 145
Query: 211 GKAGPMVHTGACVASLLGQGGSKKYGLTWKWLRFF--KNXXXXXXFVTCGSXXXXXXXXX 268
G+ GP V G + ++ L F K + G+
Sbjct: 146 GREGPTVQIGGNIGRMV--------------LDIFRLKGDEARHTLLATGAAAGLAAAFN 191
Query: 269 XPVGGLLFAIEEMASWWRSALL-WRAFFTTAIVAILLR-------AFIDICK 312
P+ G+LF IEEM +R L+ +A F I++ ++ A ID+ K
Sbjct: 192 APLAGILFIIEEMRPQFRYTLISIKAVFIGVIMSTIMYRIFNHEVALIDVGK 243
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 3/86 (3%)
Query: 451 NLFSKDTDKEFQHSSMLIFFVTCFSLSVLSYGIVAPAGLFVPAIVTGASYGRFVGMLVGS 510
NL T F ++ FV ++L + AP G+F P + G G GM+
Sbjct: 318 NLIPIATAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVE 377
Query: 511 ---HSNLNHGLYAVLGAASFLGGSMR 533
+L G +A+ G + L S+R
Sbjct: 378 LFPQYHLEAGTFAIAGMGALLAASIR 403
>pdb|2HLF|A Chain A, Structure Of The Escherichis Coli Clc Chloride Channel
Y445e Mutant And Fab Complex
pdb|2HLF|B Chain B, Structure Of The Escherichis Coli Clc Chloride Channel
Y445e Mutant And Fab Complex
Length = 444
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 72/172 (41%), Gaps = 26/172 (15%)
Query: 151 VLTLFASIVTATVAPVAAGSGIPEVKAYLNGVDAPGILSFRTLVIKIIGSISAVSSSLLV 210
VL +F + AP A GSGIPE++ L D + +R L +K G + + +++
Sbjct: 72 VLAMFGYFLVRKYAPEAGGSGIPEIEGALE--DQRPVRWWRVLPVKFFGGLGTLGGGMVL 129
Query: 211 GKAGPMVHTGACVASLLGQGGSKKYGLTWKWLRFF--KNXXXXXXFVTCGSXXXXXXXXX 268
G+ GP V G + ++ L F K + G+
Sbjct: 130 GREGPTVQIGGNIGRMV--------------LDIFRLKGDEARHTLLATGAAAGLAAAFN 175
Query: 269 XPVGGLLFAIEEMASWWRSALL-WRAFFTTAIVAILLR-------AFIDICK 312
P+ G+LF IEEM +R L+ +A F I++ ++ A ID+ K
Sbjct: 176 APLAGILFIIEEMRPQFRYTLISIKAVFIGVIMSTIMYRIFNHEVALIDVGK 227
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 3/86 (3%)
Query: 451 NLFSKDTDKEFQHSSMLIFFVTCFSLSVLSYGIVAPAGLFVPAIVTGASYGRFVGMLVGS 510
NL T F ++ FV ++L + AP G+F P + G G GM+
Sbjct: 302 NLIPIATAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVE 361
Query: 511 ---HSNLNHGLYAVLGAASFLGGSMR 533
+L G +A+ G + L S+R
Sbjct: 362 LFPQYHLEAGTFAIAGMGALLAASIR 387
>pdb|2HT4|A Chain A, Structure Of The Escherichia Coli Clc Chloride Channel
Y445w Mutant And Fab Complex
pdb|2HT4|B Chain B, Structure Of The Escherichia Coli Clc Chloride Channel
Y445w Mutant And Fab Complex
Length = 473
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 72/172 (41%), Gaps = 26/172 (15%)
Query: 151 VLTLFASIVTATVAPVAAGSGIPEVKAYLNGVDAPGILSFRTLVIKIIGSISAVSSSLLV 210
VL +F + AP A GSGIPE++ L D + +R L +K G + + +++
Sbjct: 88 VLAMFGYFLVRKYAPEAGGSGIPEIEGALE--DQRPVRWWRVLPVKFFGGLGTLGGGMVL 145
Query: 211 GKAGPMVHTGACVASLLGQGGSKKYGLTWKWLRFF--KNXXXXXXFVTCGSXXXXXXXXX 268
G+ GP V G + ++ L F K + G+
Sbjct: 146 GREGPTVQIGGNIGRMV--------------LDIFRLKGDEARHTLLATGAAAGLAAAFN 191
Query: 269 XPVGGLLFAIEEMASWWRSALL-WRAFFTTAIVAILLR-------AFIDICK 312
P+ G+LF IEEM +R L+ +A F I++ ++ A ID+ K
Sbjct: 192 APLAGILFIIEEMRPQFRYTLISIKAVFIGVIMSTIMYRIFNHEVALIDVGK 243
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 3/86 (3%)
Query: 451 NLFSKDTDKEFQHSSMLIFFVTCFSLSVLSYGIVAPAGLFVPAIVTGASYGRFVGMLVGS 510
NL T F ++ FV ++L + AP G+F P + G G GM+
Sbjct: 318 NLIPIATAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVE 377
Query: 511 ---HSNLNHGLYAVLGAASFLGGSMR 533
+L G +A+ G + L S+R
Sbjct: 378 LFPQYHLEAGTFAIAGMGALLAASIR 403
>pdb|2R9H|A Chain A, Crystal Structure Of Q207c Mutant Of Clc-Ec1 In Complex
With Fab
pdb|2R9H|B Chain B, Crystal Structure Of Q207c Mutant Of Clc-Ec1 In Complex
With Fab
Length = 444
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 72/172 (41%), Gaps = 26/172 (15%)
Query: 151 VLTLFASIVTATVAPVAAGSGIPEVKAYLNGVDAPGILSFRTLVIKIIGSISAVSSSLLV 210
VL +F + AP A GSGIPE++ L D + +R L +K G + + +++
Sbjct: 72 VLAMFGYFLVRKYAPEAGGSGIPEIEGALE--DQRPVRWWRVLPVKFFGGLGTLGGGMVL 129
Query: 211 GKAGPMVHTGACVASLLGQGGSKKYGLTWKWLRFF--KNXXXXXXFVTCGSXXXXXXXXX 268
G+ GP V G + ++ L F K + G+
Sbjct: 130 GREGPTVQIGGNIGRMV--------------LDIFRLKGDEARHTLLATGAAAGLAAAFN 175
Query: 269 XPVGGLLFAIEEMASWWRSALL-WRAFFTTAIVAILLR-------AFIDICK 312
P+ G+LF IEEM +R L+ +A F I++ ++ A ID+ K
Sbjct: 176 APLAGILFIIEEMRPCFRYTLISIKAVFIGVIMSTIMYRIFNHEVALIDVGK 227
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 3/86 (3%)
Query: 451 NLFSKDTDKEFQHSSMLIFFVTCFSLSVLSYGIVAPAGLFVPAIVTGASYGRFVGMLVGS 510
NL T F ++ FV ++L + AP G+F P + G G GM+
Sbjct: 302 NLIPIATAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVE 361
Query: 511 ---HSNLNHGLYAVLGAASFLGGSMR 533
+L G +A+ G + L S+R
Sbjct: 362 LFPQYHLEAGTFAIAGMGALLAASIR 387
>pdb|2EZ0|A Chain A, Crystal Structure Of The S107aE148QY445A MUTANT OF ECCLC,
In Complex With A Fab Fragment
pdb|2EZ0|B Chain B, Crystal Structure Of The S107aE148QY445A MUTANT OF ECCLC,
In Complex With A Fab Fragment
Length = 473
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 3/86 (3%)
Query: 451 NLFSKDTDKEFQHSSMLIFFVTCFSLSVLSYGIVAPAGLFVPAIVTGASYGRFVGMLVGS 510
NL T F ++ FV ++L + AP G+F P + G G GM+
Sbjct: 318 NLIPIATAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVE 377
Query: 511 ---HSNLNHGLYAVLGAASFLGGSMR 533
+L G +A+ G + L S+R
Sbjct: 378 LFPQYHLEAGTFAIAGMGALLAASIR 403
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 72/172 (41%), Gaps = 26/172 (15%)
Query: 151 VLTLFASIVTATVAPVAAGSGIPEVKAYLNGVDAPGILSFRTLVIKIIGSISAVSSSLLV 210
VL +F + AP A G+GIPE++ L D + +R L +K G + + +++
Sbjct: 88 VLAMFGYFLVRKYAPEAGGAGIPEIEGALE--DQRPVRWWRVLPVKFFGGLGTLGGGMVL 145
Query: 211 GKAGPMVHTGACVASLLGQGGSKKYGLTWKWLRFF--KNXXXXXXFVTCGSXXXXXXXXX 268
G+ GP V G + ++ L F K + G+
Sbjct: 146 GRQGPTVQIGGNIGRMV--------------LDIFRLKGDEARHTLLATGAAAGLAAAFN 191
Query: 269 XPVGGLLFAIEEMASWWRSALL-WRAFFTTAIVAILLR-------AFIDICK 312
P+ G+LF IEEM +R L+ +A F I++ ++ A ID+ K
Sbjct: 192 APLAGILFIIEEMRPQFRYTLISIKAVFIGVIMSTIMYRIFNHEVALIDVGK 243
>pdb|3NMO|A Chain A, Crystal Structure Of An Engineered Monomeric Clc-Ec1 Cl-H+
Transporter
Length = 465
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 3/86 (3%)
Query: 451 NLFSKDTDKEFQHSSMLIFFVTCFSLSVLSYGIVAPAGLFVPAIVTGASYGRFVGMLVGS 510
NL T F ++ FV ++L + AP G+F P + G G GM+
Sbjct: 318 NLIPIATAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVE 377
Query: 511 ---HSNLNHGLYAVLGAASFLGGSMR 533
+L G +A+ G + L S+R
Sbjct: 378 LFPQYHLEAGTFAIAGMGALLAASIR 403
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 151 VLTLFASIVTATVAPVAAGSGIPEVKAYLNGVDAPGILSFRTLVIKIIGSISAVSSSLLV 210
VL +F + AP A GSGIPE++ L D + +R L +K G + + +++
Sbjct: 88 VLAMFGYFLVRKYAPEAGGSGIPEIEGALE--DQRPVRWWRVLPVKFFGGLGTLGGGMVL 145
Query: 211 GKAGPMVHTGACVASLL 227
G+ GP V G + ++
Sbjct: 146 GREGPTVQIGGNIGRMV 162
>pdb|2FEC|A Chain A, Structure Of The E203q Mutant Of The Cl-H+ EXCHANGER CLC-
Ec1 From E.Coli
pdb|2FEC|B Chain B, Structure Of The E203q Mutant Of The Cl-H+ EXCHANGER CLC-
Ec1 From E.Coli
pdb|2FED|A Chain A, Structure Of The E203q Mutant Of The Cl-H+ EXCHANGER CLC-
Ec1 From E.Coli
pdb|2FED|B Chain B, Structure Of The E203q Mutant Of The Cl-H+ EXCHANGER CLC-
Ec1 From E.Coli
Length = 465
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 3/86 (3%)
Query: 451 NLFSKDTDKEFQHSSMLIFFVTCFSLSVLSYGIVAPAGLFVPAIVTGASYGRFVGMLVGS 510
NL T F ++ FV ++L + AP G+F P + G G GM+
Sbjct: 318 NLIPIATAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVE 377
Query: 511 ---HSNLNHGLYAVLGAASFLGGSMR 533
+L G +A+ G + L S+R
Sbjct: 378 LFPQYHLEAGTFAIAGMGALLAASIR 403
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 72/172 (41%), Gaps = 26/172 (15%)
Query: 151 VLTLFASIVTATVAPVAAGSGIPEVKAYLNGVDAPGILSFRTLVIKIIGSISAVSSSLLV 210
VL +F + AP A GSGIPE++ L D + +R L +K G + + +++
Sbjct: 88 VLAMFGYFLVRKYAPEAGGSGIPEIEGALE--DQRPVRWWRVLPVKFFGGLGTLGGGMVL 145
Query: 211 GKAGPMVHTGACVASLLGQGGSKKYGLTWKWLRFF--KNXXXXXXFVTCGSXXXXXXXXX 268
G+ GP V G + ++ L F K + G+
Sbjct: 146 GREGPTVQIGGNIGRMV--------------LDIFRLKGDEARHTLLATGAAAGLAAAFN 191
Query: 269 XPVGGLLFAIEEMASWWRSALL-WRAFFTTAIVAILLR-------AFIDICK 312
P+ G+LF IE+M +R L+ +A F I++ ++ A ID+ K
Sbjct: 192 APLAGILFIIEQMRPQFRYTLISIKAVFIGVIMSTIMYRIFNHEVALIDVGK 243
>pdb|3EJZ|A Chain A, Structure Of E203v Mutant E.Coli Cl-H+ EXCHANGER, CLC-Ec1
pdb|3EJZ|B Chain B, Structure Of E203v Mutant E.Coli Cl-H+ EXCHANGER, CLC-Ec1
Length = 473
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 3/86 (3%)
Query: 451 NLFSKDTDKEFQHSSMLIFFVTCFSLSVLSYGIVAPAGLFVPAIVTGASYGRFVGMLVGS 510
NL T F ++ FV ++L + AP G+F P + G G GM+
Sbjct: 318 NLIPIATAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVE 377
Query: 511 ---HSNLNHGLYAVLGAASFLGGSMR 533
+L G +A+ G + L S+R
Sbjct: 378 LFPQYHLEAGTFAIAGMGALLAASIR 403
Score = 33.5 bits (75), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 151 VLTLFASIVTATVAPVAAGSGIPEVKAYLNGVDAPGILSFRTLVIKIIGSISAVSSSLLV 210
VL +F + AP A GSGIPE++ L D + +R L +K G + + +++
Sbjct: 88 VLAMFGYFLVRKYAPEAGGSGIPEIEGALE--DQRPVRWWRVLPVKFFGGLGTLGGGMVL 145
Query: 211 GKAGPMVHTGACVASLL 227
G+ GP V G + ++
Sbjct: 146 GREGPTVQIGGNIGRMV 162
>pdb|3EJY|A Chain A, Structure Of E203h Mutant Of E.Coli Cl-H+ ANTIPORTER, CLC-
Ec1
pdb|3EJY|B Chain B, Structure Of E203h Mutant Of E.Coli Cl-H+ ANTIPORTER, CLC-
Ec1
Length = 473
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 3/86 (3%)
Query: 451 NLFSKDTDKEFQHSSMLIFFVTCFSLSVLSYGIVAPAGLFVPAIVTGASYGRFVGMLVGS 510
NL T F ++ FV ++L + AP G+F P + G G GM+
Sbjct: 318 NLIPIATAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVE 377
Query: 511 ---HSNLNHGLYAVLGAASFLGGSMR 533
+L G +A+ G + L S+R
Sbjct: 378 LFPQYHLEAGTFAIAGMGALLAASIR 403
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 151 VLTLFASIVTATVAPVAAGSGIPEVKAYLNGVDAPGILSFRTLVIKIIGSISAVSSSLLV 210
VL +F + AP A GSGIPE++ L D + +R L +K G + + +++
Sbjct: 88 VLAMFGYFLVRKYAPEAGGSGIPEIEGALE--DQRPVRWWRVLPVKFFGGLGTLGGGMVL 145
Query: 211 GKAGPMVHTGACVASLL 227
G+ GP V G + ++
Sbjct: 146 GREGPTVQIGGNIGRMV 162
>pdb|4FTP|A Chain A, Structure Of The E202y Mutant Of The Cl-H+ ANTIPORTER
CLC-Ec1 From E.Coli
Length = 465
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 3/86 (3%)
Query: 451 NLFSKDTDKEFQHSSMLIFFVTCFSLSVLSYGIVAPAGLFVPAIVTGASYGRFVGMLVGS 510
NL T F ++ FV ++L + AP G+F P + G G GM+
Sbjct: 318 NLIPIATAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVE 377
Query: 511 ---HSNLNHGLYAVLGAASFLGGSMR 533
+L G +A+ G + L S+R
Sbjct: 378 LFPQYHLEAGTFAIAGMGALLAASIR 403
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 151 VLTLFASIVTATVAPVAAGSGIPEVKAYLNGVDAPGILSFRTLVIKIIGSISAVSSSLLV 210
VL +F + AP A GSGIPE++ L D + +R L +K G + + +++
Sbjct: 88 VLAMFGYFLVRKYAPEAGGSGIPEIEGALE--DQRPVRWWRVLPVKFFGGLGTLGGGMVL 145
Query: 211 GKAGPMVHTGACVASLL 227
G+ GP V G + ++
Sbjct: 146 GREGPTVQIGGNIGRMV 162
>pdb|2J9L|A Chain A, Cytoplasmic Domain Of The Human Chloride Transporter Clc-5
In Complex With Atp
pdb|2J9L|B Chain B, Cytoplasmic Domain Of The Human Chloride Transporter Clc-5
In Complex With Atp
pdb|2J9L|C Chain C, Cytoplasmic Domain Of The Human Chloride Transporter Clc-5
In Complex With Atp
pdb|2J9L|D Chain D, Cytoplasmic Domain Of The Human Chloride Transporter Clc-5
In Complex With Atp
pdb|2J9L|E Chain E, Cytoplasmic Domain Of The Human Chloride Transporter Clc-5
In Complex With Atp
pdb|2J9L|F Chain F, Cytoplasmic Domain Of The Human Chloride Transporter Clc-5
In Complex With Atp
pdb|2JA3|A Chain A, Cytoplasmic Domain Of The Human Chloride Transporter Clc-5
In Complex With Adp
pdb|2JA3|B Chain B, Cytoplasmic Domain Of The Human Chloride Transporter Clc-5
In Complex With Adp
pdb|2JA3|C Chain C, Cytoplasmic Domain Of The Human Chloride Transporter Clc-5
In Complex With Adp
pdb|2JA3|D Chain D, Cytoplasmic Domain Of The Human Chloride Transporter Clc-5
In Complex With Adp
pdb|2JA3|E Chain E, Cytoplasmic Domain Of The Human Chloride Transporter Clc-5
In Complex With Adp
pdb|2JA3|F Chain F, Cytoplasmic Domain Of The Human Chloride Transporter Clc-5
In Complex With Adp
Length = 185
Score = 33.5 bits (75), Expect = 0.46, Method: Composition-based stats.
Identities = 34/151 (22%), Positives = 63/151 (41%), Gaps = 25/151 (16%)
Query: 618 NVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNPTVNDAFSQ 677
+V ++ T ++GFPV+ E+ L G +LR LI ++ D
Sbjct: 38 DVETIISETTYSGFPVVVSR---ESQRLVGFVLRRDLIISIENAR-------KKQDGVVS 87
Query: 678 FSAVDFAKRGSGNGDKXXXXXXXXXXXXXYVDLHPFANASPYTVVETMSLAKALILFREV 737
S + F + + L + SP+TV + + + +FR++
Sbjct: 88 TSIIYFTEHSP----------PLPPYTPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKL 137
Query: 738 GLRHLLVIPKISNGSPVMGILTRHDFMPEHI 768
GLR LV ++ ++GI+T+ D + +HI
Sbjct: 138 GLRQCLV----THNGRLLGIITKKDVL-KHI 163
>pdb|2D4Z|A Chain A, Crystal Structure Of The Cytoplasmic Domain Of The
Chloride Channel Clc-0
pdb|2D4Z|B Chain B, Crystal Structure Of The Cytoplasmic Domain Of The
Chloride Channel Clc-0
Length = 250
Score = 33.1 bits (74), Expect = 0.58, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Query: 597 LTVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLIT 656
+ VGD++ + G+++HVLR T+ FP +D +T L G I R +
Sbjct: 13 IQVGDIMVRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDT---PDTNTLLGSIDRTEVEG 69
Query: 657 LLKKK 661
LL+++
Sbjct: 70 LLQRR 74
>pdb|3L31|A Chain A, Crystal Structure Of The Cbs And Drtgg Domains Of The
Regulatory Region Of Clostridium Perfringens
Pyrophosphatase Complexed With The Inhibitor, Amp
pdb|3L31|B Chain B, Crystal Structure Of The Cbs And Drtgg Domains Of The
Regulatory Region Of Clostridium Perfringens
Pyrophosphatase Complexed With The Inhibitor, Amp
Length = 252
Score = 30.8 bits (68), Expect = 3.0, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 5/39 (12%)
Query: 623 LRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKK 661
+ TR++ +PVIDEN + G I R HLI+ KKK
Sbjct: 209 MSETRYSNYPVIDENNK-----VVGSIARFHLISTHKKK 242
>pdb|3L2B|A Chain A, Crystal Structure Of The Cbs And Drtgg Domains Of The
Regulatory Region Of Clostridium Perfringens
Pyrophosphatase Complexed With Activator, Diadenosine
Tetraphosphate
pdb|3L2B|B Chain B, Crystal Structure Of The Cbs And Drtgg Domains Of The
Regulatory Region Of Clostridium Perfringens
Pyrophosphatase Complexed With Activator, Diadenosine
Tetraphosphate
Length = 245
Score = 30.8 bits (68), Expect = 3.0, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 5/39 (12%)
Query: 623 LRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKK 661
+ TR++ +PVIDEN + G I R HLI+ KKK
Sbjct: 212 MSETRYSNYPVIDENNK-----VVGSIARFHLISTHKKK 245
>pdb|3SNP|A Chain A, Crystal Structure Analysis Of Iron Regulatory Protein 1 In
Complex With Ferritin H Ire Rna
pdb|3SNP|B Chain B, Crystal Structure Analysis Of Iron Regulatory Protein 1 In
Complex With Ferritin H Ire Rna
pdb|3SN2|A Chain A, Crystal Structure Analysis Of Iron Regulatory Protein 1 In
Complex With Transferrin Receptor Ire B Rna
Length = 908
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 14/61 (22%)
Query: 413 EACPTIGRSGNYKKFQCAPGYYNDLASLIFNTNDDAIRNLFSKDTDKEFQHSSMLIFFVT 472
E+C +G +K FQ AP ++ND + I+N D++ H S++I +T
Sbjct: 409 ESC--LGAKQGFKGFQVAPDHHNDHKTFIYN------------DSEFTLSHGSVVIAAIT 454
Query: 473 C 473
Sbjct: 455 S 455
>pdb|1XVU|A Chain A, Crystal Structure Of Caib Mutant D169a In Complex With
Coenzyme A
pdb|1XVV|A Chain A, Crystal Structure Of Caib Mutant D169a In Complex With
Carnitinyl-Coa
Length = 408
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 25/43 (58%)
Query: 713 FANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVM 755
+ A Y V+E + + + F+++GL HLL P+I G+ ++
Sbjct: 242 YKCADGYIVMELVGITQIEECFKDIGLAHLLGTPEIPEGTQLI 284
>pdb|1XK7|A Chain A, Crystal Structure- C2 Form- Of Escherichia Coli
Crotonobetainyl-coa: Carnitine Coa Transferase (caib)
pdb|1XK7|B Chain B, Crystal Structure- C2 Form- Of Escherichia Coli
Crotonobetainyl-coa: Carnitine Coa Transferase (caib)
pdb|1XK7|C Chain C, Crystal Structure- C2 Form- Of Escherichia Coli
Crotonobetainyl-coa: Carnitine Coa Transferase (caib)
pdb|1XVT|A Chain A, Crystal Structure Of Native Caib In Complex With Coenzyme
A
Length = 408
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 24/43 (55%)
Query: 713 FANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVM 755
+ A Y V E + + + F+++GL HLL P+I G+ ++
Sbjct: 242 YKCADGYIVXELVGITQIEECFKDIGLAHLLGTPEIPEGTQLI 284
>pdb|1XK6|A Chain A, Crystal Structure- P1 Form- Of Escherichia Coli
Crotonobetainyl-Coa: Carnitine Coa Transferase (Caib)
pdb|1XK6|B Chain B, Crystal Structure- P1 Form- Of Escherichia Coli
Crotonobetainyl-Coa: Carnitine Coa Transferase (Caib)
pdb|1XK6|C Chain C, Crystal Structure- P1 Form- Of Escherichia Coli
Crotonobetainyl-Coa: Carnitine Coa Transferase (Caib)
pdb|1XK6|D Chain D, Crystal Structure- P1 Form- Of Escherichia Coli
Crotonobetainyl-Coa: Carnitine Coa Transferase (Caib)
Length = 408
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 24/43 (55%)
Query: 713 FANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVM 755
+ A Y V E + + + F+++GL HLL P+I G+ ++
Sbjct: 242 YKCADGYIVXELVGITQIEECFKDIGLAHLLGTPEIPEGTQLI 284
>pdb|1XA3|A Chain A, Crystal Structure Of Caib, A Type Iii Coa Transferase In
Carnitine Metabolism
pdb|1XA3|B Chain B, Crystal Structure Of Caib, A Type Iii Coa Transferase In
Carnitine Metabolism
pdb|1XA4|A Chain A, Crystal Structure Of Caib, A Type Iii Coa Transferase In
Carnitine Metabolism
pdb|1XA4|B Chain B, Crystal Structure Of Caib, A Type Iii Coa Transferase In
Carnitine Metabolism
Length = 437
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 24/43 (55%)
Query: 713 FANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVM 755
+ A Y V E + + + F+++GL HLL P+I G+ ++
Sbjct: 263 YKCADGYIVXELVGITQIEECFKDIGLAHLLGTPEIPEGTQLI 305
>pdb|2FUG|6 Chain 6, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|2FUG|F Chain F, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|2FUG|O Chain O, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|2FUG|X Chain X, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|3I9V|6 Chain 6, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 2 MolASU
pdb|3I9V|F Chain F, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 2 MolASU
pdb|3IAM|6 Chain 6, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Reduced, 2 MolASU,
WITH BOUND NADH
pdb|3IAM|F Chain F, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Reduced, 2 MolASU,
WITH BOUND NADH
pdb|3IAS|6 Chain 6, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
RE-Refined To 3.15 Angstrom Resolution
pdb|3IAS|F Chain F, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
RE-Refined To 3.15 Angstrom Resolution
pdb|3IAS|O Chain O, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
RE-Refined To 3.15 Angstrom Resolution
pdb|3IAS|X Chain X, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
RE-Refined To 3.15 Angstrom Resolution
pdb|3M9S|6 Chain 6, Crystal Structure Of Respiratory Complex I From Thermus
Thermophilus
pdb|3M9S|F Chain F, Crystal Structure Of Respiratory Complex I From Thermus
Thermophilus
pdb|2YBB|6 Chain 6, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
pdb|4HEA|6 Chain 6, Crystal Structure Of The Entire Respiratory Complex I From
Thermus Thermophilus
pdb|4HEA|G Chain G, Crystal Structure Of The Entire Respiratory Complex I From
Thermus Thermophilus
Length = 181
Score = 30.0 bits (66), Expect = 5.2, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 273 GLLFA-IEEMASWWRSALLWRAFFTTAIVAILLRAFID 309
G+LF +E++ +W RS LW A F A AI + A D
Sbjct: 18 GILFTTLEKLVAWGRSNSLWPATFGLACCAIEMMASTD 55
>pdb|1NIO|A Chain A, Crystal Structure Of Beta-Luffin, A Ribosome Inactivating
Protein At 2.0a Resolution
Length = 247
Score = 30.0 bits (66), Expect = 5.3, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 22/41 (53%)
Query: 417 TIGRSGNYKKFQCAPGYYNDLASLIFNTNDDAIRNLFSKDT 457
T+ SGNY++ Q A G + L F D AI +LF D+
Sbjct: 104 TLPYSGNYERLQNAAGKVREKIPLGFRAFDSAITSLFHYDS 144
>pdb|2OQA|A Chain A, X-ray Sequence And Crystal Structure Of Luffaculin 1, A
Novel Type 1 Ribosome-inactivating Protein
pdb|2OQA|B Chain B, X-ray Sequence And Crystal Structure Of Luffaculin 1, A
Novel Type 1 Ribosome-inactivating Protein
Length = 241
Score = 29.6 bits (65), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 22/47 (46%)
Query: 411 ASEACPTIGRSGNYKKFQCAPGYYNDLASLIFNTNDDAIRNLFSKDT 457
A T+ SGNY+K Q A G + L F D AI LF D+
Sbjct: 97 AGSTIVTLPYSGNYEKLQTAAGKIREKIPLGFPALDSAITTLFHYDS 143
>pdb|1W5S|A Chain A, Structure Of The Aeropyrum Pernix Orc2 Protein (Adp Form)
pdb|1W5S|B Chain B, Structure Of The Aeropyrum Pernix Orc2 Protein (Adp Form)
pdb|1W5T|A Chain A, Structure Of The Aeropyrum Pernix Orc2 Protein (Adpnp-Adp
Complexes)
pdb|1W5T|B Chain B, Structure Of The Aeropyrum Pernix Orc2 Protein (Adpnp-Adp
Complexes)
pdb|1W5T|C Chain C, Structure Of The Aeropyrum Pernix Orc2 Protein (Adpnp-Adp
Complexes)
Length = 412
Score = 29.3 bits (64), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 24/47 (51%)
Query: 153 TLFASIVTATVAPVAAGSGIPEVKAYLNGVDAPGILSFRTLVIKIIG 199
T A V+ AA G+ +AY+N +AP + + +L+++ G
Sbjct: 66 TTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTG 112
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.139 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,533,543
Number of Sequences: 62578
Number of extensions: 754320
Number of successful extensions: 1907
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1824
Number of HSP's gapped (non-prelim): 62
length of query: 794
length of database: 14,973,337
effective HSP length: 107
effective length of query: 687
effective length of database: 8,277,491
effective search space: 5686636317
effective search space used: 5686636317
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 55 (25.8 bits)