Query 003801
Match_columns 794
No_of_seqs 506 out of 2670
Neff 7.7
Searched_HMMs 46136
Date Thu Mar 28 12:17:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003801.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003801hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0474 Cl- channel CLC-7 and 100.0 7E-172 2E-176 1387.2 46.9 725 32-780 28-759 (762)
2 KOG0475 Cl- channel CLC-3 and 100.0 1.8E-88 4E-93 739.7 32.6 587 99-767 57-694 (696)
3 KOG0476 Cl- channel CLC-2 and 100.0 2E-83 4.3E-88 708.0 25.7 653 79-769 78-859 (931)
4 cd03685 ClC_6_like ClC-6-like 100.0 5.5E-80 1.2E-84 700.0 45.5 459 65-589 1-462 (466)
5 PRK01862 putative voltage-gate 100.0 2.2E-76 4.9E-81 691.7 57.7 542 98-769 26-572 (574)
6 cd03684 ClC_3_like ClC-3-like 100.0 2.3E-70 4.9E-75 618.6 41.2 423 104-586 1-445 (445)
7 cd03683 ClC_1_like ClC-1-like 100.0 7.6E-68 1.6E-72 595.5 38.9 411 97-588 2-426 (426)
8 cd01036 ClC_euk Chloride chann 100.0 3.1E-67 6.8E-72 589.3 36.1 403 104-575 1-416 (416)
9 PRK01610 putative voltage-gate 100.0 9.1E-60 2E-64 527.7 43.6 408 95-581 3-417 (418)
10 cd01031 EriC ClC chloride chan 100.0 1.5E-59 3.3E-64 526.8 43.1 398 103-579 1-402 (402)
11 PRK05277 chloride channel prot 100.0 1.7E-58 3.7E-63 523.2 46.5 410 98-581 2-417 (438)
12 cd01034 EriC_like ClC chloride 100.0 9.9E-57 2.1E-61 501.5 39.8 385 108-575 1-390 (390)
13 cd01033 ClC_like Putative ClC 100.0 1.4E-56 3.1E-61 498.7 41.0 384 104-569 1-386 (388)
14 PF00654 Voltage_CLC: Voltage 100.0 3.4E-57 7.3E-62 499.4 32.2 345 152-567 2-354 (355)
15 COG0038 EriC Chloride channel 100.0 4.9E-55 1.1E-59 492.0 45.0 410 96-587 22-437 (443)
16 cd00400 Voltage_gated_ClC CLC 100.0 1.5E-52 3.2E-57 468.2 40.4 380 104-563 1-383 (383)
17 cd03682 ClC_sycA_like ClC sycA 100.0 1.1E-49 2.4E-54 442.6 41.0 375 100-575 2-378 (378)
18 PRK03655 putative ion channel 100.0 1.7E-47 3.7E-52 426.3 40.3 383 94-566 10-397 (414)
19 cd01034 EriC_like ClC chloride 99.7 3E-15 6.4E-20 167.8 20.9 182 96-306 201-382 (390)
20 cd01033 ClC_like Putative ClC 99.6 2.2E-15 4.9E-20 168.3 16.7 183 96-307 204-386 (388)
21 COG3448 CBS-domain-containing 99.6 8.7E-15 1.9E-19 148.7 17.4 134 594-771 242-375 (382)
22 COG2524 Predicted transcriptio 99.6 3.9E-15 8.5E-20 149.1 10.9 123 594-768 169-291 (294)
23 PRK05277 chloride channel prot 99.6 2.4E-14 5.1E-19 162.9 17.8 188 96-306 216-403 (438)
24 PRK11543 gutQ D-arabinose 5-ph 99.6 1.3E-14 2.9E-19 158.7 14.0 147 570-766 164-318 (321)
25 PRK10892 D-arabinose 5-phospha 99.6 2.4E-14 5.2E-19 157.0 14.3 147 570-766 169-323 (326)
26 cd00400 Voltage_gated_ClC CLC 99.5 1.1E-13 2.3E-18 155.3 16.0 165 95-283 204-368 (383)
27 PRK01862 putative voltage-gate 99.5 4.8E-13 1E-17 157.6 16.5 182 97-306 239-421 (574)
28 COG3620 Predicted transcriptio 99.5 2.6E-13 5.7E-18 126.4 10.5 122 595-768 63-184 (187)
29 PRK01610 putative voltage-gate 99.5 1.4E-12 3E-17 147.0 17.6 183 96-306 220-403 (418)
30 COG4109 Predicted transcriptio 99.4 1.5E-13 3.2E-18 143.1 7.1 149 552-769 157-307 (432)
31 cd04641 CBS_pair_28 The CBS do 99.4 1.2E-12 2.6E-17 121.4 12.3 118 606-765 2-119 (120)
32 cd03682 ClC_sycA_like ClC sycA 99.4 8.3E-12 1.8E-16 139.4 18.9 153 96-282 199-353 (378)
33 cd04619 CBS_pair_6 The CBS dom 99.4 3.3E-12 7.1E-17 117.4 12.5 111 607-765 3-113 (114)
34 PRK15094 magnesium/cobalt effl 99.4 2.2E-12 4.9E-17 138.4 12.6 130 594-774 64-195 (292)
35 cd04603 CBS_pair_KefB_assoc Th 99.4 3.8E-12 8.1E-17 116.5 11.8 109 606-765 2-110 (111)
36 PRK07807 inosine 5-monophospha 99.4 1.6E-12 3.5E-17 147.6 11.3 143 571-768 58-205 (479)
37 TIGR03520 GldE gliding motilit 99.4 2.4E-12 5.3E-17 144.6 12.6 127 594-773 188-316 (408)
38 cd04618 CBS_pair_5 The CBS dom 99.4 4.9E-12 1.1E-16 113.5 11.1 95 606-765 2-97 (98)
39 cd01031 EriC ClC chloride chan 99.4 1.1E-11 2.4E-16 139.7 16.6 184 96-305 206-389 (402)
40 cd04600 CBS_pair_HPP_assoc Thi 99.3 7.4E-12 1.6E-16 116.4 11.6 122 605-765 2-123 (124)
41 cd04593 CBS_pair_EriC_assoc_ba 99.3 1E-11 2.2E-16 114.0 12.0 111 606-765 2-114 (115)
42 cd04617 CBS_pair_4 The CBS dom 99.3 1.3E-11 2.8E-16 114.1 12.8 114 606-765 2-117 (118)
43 PRK07107 inosine 5-monophospha 99.3 7.1E-12 1.5E-16 143.2 11.9 160 571-783 65-232 (502)
44 cd04639 CBS_pair_26 The CBS do 99.3 1.3E-11 2.9E-16 112.3 11.2 109 606-765 2-110 (111)
45 cd04605 CBS_pair_MET2_assoc Th 99.3 1.9E-11 4.1E-16 111.1 12.2 108 605-765 2-109 (110)
46 cd04608 CBS_pair_PALP_assoc Th 99.3 9.3E-12 2E-16 116.6 9.8 113 605-766 2-123 (124)
47 cd04596 CBS_pair_DRTGG_assoc T 99.3 1.3E-11 2.8E-16 112.1 9.9 105 606-765 3-107 (108)
48 cd04801 CBS_pair_M50_like This 99.3 2.8E-11 6.1E-16 110.9 12.2 109 606-765 2-113 (114)
49 cd04803 CBS_pair_15 The CBS do 99.3 2.1E-11 4.5E-16 113.0 11.4 120 606-765 2-121 (122)
50 cd04624 CBS_pair_11 The CBS do 99.3 3E-11 6.5E-16 110.1 12.2 110 606-765 2-111 (112)
51 cd04586 CBS_pair_BON_assoc Thi 99.3 1.4E-11 3E-16 116.8 10.2 133 605-765 2-134 (135)
52 cd04607 CBS_pair_NTP_transfera 99.3 3.9E-11 8.4E-16 109.8 12.4 109 607-765 4-112 (113)
53 cd04630 CBS_pair_17 The CBS do 99.3 3.5E-11 7.7E-16 110.3 12.1 112 606-765 2-113 (114)
54 cd04623 CBS_pair_10 The CBS do 99.3 3.8E-11 8.2E-16 109.3 12.2 111 606-765 2-112 (113)
55 cd04614 CBS_pair_1 The CBS dom 99.3 2.8E-11 6E-16 108.0 10.7 94 606-765 2-95 (96)
56 cd04629 CBS_pair_16 The CBS do 99.3 2.2E-11 4.8E-16 111.3 10.2 112 606-765 2-113 (114)
57 cd04615 CBS_pair_2 The CBS dom 99.3 3.9E-11 8.5E-16 109.5 11.7 110 607-765 3-112 (113)
58 cd04583 CBS_pair_ABC_OpuCA_ass 99.3 4.5E-11 9.7E-16 108.2 11.9 107 605-765 2-108 (109)
59 cd04595 CBS_pair_DHH_polyA_Pol 99.3 4.8E-11 1E-15 108.5 12.0 108 605-765 2-109 (110)
60 cd04582 CBS_pair_ABC_OpuCA_ass 99.2 4.6E-11 1E-15 107.8 11.2 104 606-765 2-105 (106)
61 cd04635 CBS_pair_22 The CBS do 99.2 3.6E-11 7.8E-16 111.4 10.7 120 606-765 2-121 (122)
62 cd04631 CBS_pair_18 The CBS do 99.2 4.3E-11 9.4E-16 111.4 11.1 122 606-765 2-124 (125)
63 cd04613 CBS_pair_SpoIVFB_EriC_ 99.2 4.8E-11 1E-15 108.8 11.2 112 606-765 2-113 (114)
64 cd04627 CBS_pair_14 The CBS do 99.2 6.6E-11 1.4E-15 110.1 12.4 120 606-764 2-121 (123)
65 cd04626 CBS_pair_13 The CBS do 99.2 6.2E-11 1.4E-15 107.9 11.7 109 606-765 2-110 (111)
66 TIGR01137 cysta_beta cystathio 99.2 3.5E-11 7.7E-16 138.1 12.2 147 568-766 305-452 (454)
67 cd04588 CBS_pair_CAP-ED_DUF294 99.2 9.7E-11 2.1E-15 106.4 12.3 108 606-765 2-109 (110)
68 cd04632 CBS_pair_19 The CBS do 99.2 7.3E-11 1.6E-15 110.6 11.8 126 606-765 2-127 (128)
69 cd04620 CBS_pair_7 The CBS dom 99.2 8.9E-11 1.9E-15 107.7 11.9 110 606-765 2-114 (115)
70 TIGR01302 IMP_dehydrog inosine 99.2 4.7E-11 1E-15 136.0 12.2 122 595-767 78-200 (450)
71 cd04642 CBS_pair_29 The CBS do 99.2 7.7E-11 1.7E-15 110.3 11.5 124 606-765 2-125 (126)
72 cd04622 CBS_pair_9 The CBS dom 99.2 1.3E-10 2.7E-15 106.1 12.6 111 606-765 2-112 (113)
73 cd04636 CBS_pair_23 The CBS do 99.2 7.5E-11 1.6E-15 111.3 11.2 130 606-765 2-131 (132)
74 cd04604 CBS_pair_KpsF_GutQ_ass 99.2 7.9E-11 1.7E-15 107.5 11.0 111 606-765 3-113 (114)
75 cd04587 CBS_pair_CAP-ED_DUF294 99.2 1.1E-10 2.4E-15 106.5 11.9 111 606-765 2-112 (113)
76 PTZ00314 inosine-5'-monophosph 99.2 4.8E-11 1E-15 136.7 11.6 134 597-784 96-231 (495)
77 cd04611 CBS_pair_PAS_GGDEF_DUF 99.2 1.5E-10 3.3E-15 105.0 12.4 109 606-765 2-110 (111)
78 TIGR01303 IMP_DH_rel_1 IMP deh 99.2 4.8E-11 1E-15 135.6 11.1 121 593-769 84-204 (475)
79 cd04637 CBS_pair_24 The CBS do 99.2 9.4E-11 2E-15 108.7 11.1 121 606-766 2-122 (122)
80 TIGR00400 mgtE Mg2+ transporte 99.2 2.8E-11 6.1E-16 138.0 9.2 127 594-775 128-259 (449)
81 cd04602 CBS_pair_IMPDH_2 This 99.2 9.3E-11 2E-15 107.6 10.8 109 606-765 3-113 (114)
82 cd04585 CBS_pair_ACT_assoc2 Th 99.2 1.3E-10 2.7E-15 107.3 11.7 120 606-765 2-121 (122)
83 PRK05567 inosine 5'-monophosph 99.2 7E-11 1.5E-15 135.9 11.8 117 597-767 87-204 (486)
84 cd04612 CBS_pair_SpoIVFB_EriC_ 99.2 1.7E-10 3.7E-15 104.8 11.9 109 606-765 2-110 (111)
85 cd04643 CBS_pair_30 The CBS do 99.2 1E-10 2.3E-15 107.2 10.5 114 606-765 2-115 (116)
86 cd04599 CBS_pair_GGDEF_assoc2 99.2 1.1E-10 2.4E-15 104.9 10.4 103 606-765 2-104 (105)
87 cd04591 CBS_pair_EriC_assoc_eu 99.2 2E-10 4.2E-15 104.2 12.1 100 605-765 2-104 (105)
88 cd04800 CBS_pair_CAP-ED_DUF294 99.2 1.9E-10 4.1E-15 104.6 12.0 109 606-765 2-110 (111)
89 cd04601 CBS_pair_IMPDH This cd 99.2 1E-10 2.2E-15 106.0 10.0 107 605-765 2-109 (110)
90 cd04621 CBS_pair_8 The CBS dom 99.2 1.5E-10 3.2E-15 110.2 11.4 133 606-765 2-134 (135)
91 cd04640 CBS_pair_27 The CBS do 99.2 8.2E-11 1.8E-15 110.1 9.5 117 606-765 2-125 (126)
92 PRK14869 putative manganese-de 99.2 1.1E-10 2.5E-15 136.8 12.5 164 597-768 68-304 (546)
93 cd04802 CBS_pair_3 The CBS dom 99.2 3E-10 6.6E-15 103.5 12.7 110 606-765 2-111 (112)
94 PLN02274 inosine-5'-monophosph 99.2 1.1E-10 2.3E-15 133.9 11.8 116 602-768 105-222 (505)
95 TIGR00393 kpsF KpsF/GutQ famil 99.2 1.1E-10 2.4E-15 124.4 11.1 114 596-759 154-268 (268)
96 cd04590 CBS_pair_CorC_HlyC_ass 99.2 2.5E-10 5.5E-15 103.8 11.8 109 606-765 2-110 (111)
97 cd04589 CBS_pair_CAP-ED_DUF294 99.2 3E-10 6.4E-15 103.5 12.2 109 606-765 2-110 (111)
98 COG0517 FOG: CBS domain [Gener 99.2 4.1E-10 8.8E-15 103.3 13.1 114 600-764 2-117 (117)
99 cd02205 CBS_pair The CBS domai 99.2 3.1E-10 6.6E-15 102.2 11.6 111 606-765 2-112 (113)
100 PRK11573 hypothetical protein; 99.1 2.1E-10 4.5E-15 129.1 12.6 132 594-774 184-317 (413)
101 cd04609 CBS_pair_PALP_assoc2 T 99.1 2.7E-10 5.9E-15 103.1 11.0 109 606-766 2-110 (110)
102 cd04625 CBS_pair_12 The CBS do 99.1 4.1E-10 8.9E-15 102.6 12.1 110 606-765 2-111 (112)
103 cd04610 CBS_pair_ParBc_assoc T 99.1 3.4E-10 7.3E-15 102.2 10.4 105 605-765 2-106 (107)
104 cd04606 CBS_pair_Mg_transporte 99.1 2.6E-10 5.6E-15 103.6 9.1 102 610-766 2-108 (109)
105 cd04584 CBS_pair_ACT_assoc Thi 99.1 5.5E-10 1.2E-14 103.1 10.9 119 606-765 2-120 (121)
106 cd04594 CBS_pair_EriC_assoc_ar 99.1 6.6E-10 1.4E-14 100.2 11.0 100 608-765 4-103 (104)
107 cd04598 CBS_pair_GGDEF_assoc T 99.1 6E-10 1.3E-14 102.7 10.9 113 606-765 2-118 (119)
108 cd04633 CBS_pair_20 The CBS do 99.1 5.7E-10 1.2E-14 103.1 10.7 119 606-765 2-120 (121)
109 PF00654 Voltage_CLC: Voltage 99.1 3.5E-09 7.7E-14 117.4 17.5 182 96-304 163-353 (355)
110 cd04634 CBS_pair_21 The CBS do 99.1 1.3E-09 2.9E-14 104.6 12.0 141 606-765 2-142 (143)
111 COG1253 TlyC Hemolysins and re 99.0 1.7E-09 3.6E-14 122.9 13.7 131 594-775 203-335 (429)
112 COG2905 Predicted signal-trans 99.0 5.3E-10 1.1E-14 124.0 8.7 125 594-768 146-270 (610)
113 cd04638 CBS_pair_25 The CBS do 99.0 1.7E-09 3.8E-14 97.5 10.7 104 606-765 2-105 (106)
114 COG4536 CorB Putative Mg2+ and 99.0 2.2E-09 4.8E-14 113.7 9.5 130 594-772 197-328 (423)
115 cd04592 CBS_pair_EriC_assoc_eu 98.9 5.4E-09 1.2E-13 99.3 11.3 116 606-747 2-117 (133)
116 COG0038 EriC Chloride channel 98.9 2E-08 4.3E-13 114.2 17.9 181 97-306 235-417 (443)
117 COG2239 MgtE Mg/Co/Ni transpor 98.9 2E-09 4.4E-14 120.6 8.4 129 597-780 132-265 (451)
118 PRK03655 putative ion channel 98.9 3.4E-08 7.3E-13 111.2 17.9 172 96-304 222-397 (414)
119 cd03684 ClC_3_like ClC-3-like 98.9 2.4E-08 5.1E-13 113.9 15.8 192 96-306 206-426 (445)
120 cd03685 ClC_6_like ClC-6-like 98.7 1.5E-07 3.2E-12 108.0 16.0 167 95-306 275-441 (466)
121 COG4535 CorC Putative Mg2+ and 98.7 1.9E-08 4.2E-13 100.1 6.3 133 594-777 64-198 (293)
122 PF00571 CBS: CBS domain CBS d 98.7 2.1E-08 4.7E-13 80.0 4.9 55 711-768 2-56 (57)
123 cd01036 ClC_euk Chloride chann 98.7 3.1E-07 6.7E-12 104.0 14.8 169 96-306 235-409 (416)
124 PF00571 CBS: CBS domain CBS d 98.6 9.9E-08 2.2E-12 76.2 6.8 56 599-659 1-56 (57)
125 cd03683 ClC_1_like ClC-1-like 98.5 9.9E-07 2.1E-11 100.2 14.0 184 341-568 2-202 (426)
126 KOG2550 IMP dehydrogenase/GMP 98.5 2.3E-07 5.1E-12 99.1 7.3 118 606-777 117-234 (503)
127 KOG1764 5'-AMP-activated prote 98.4 1.4E-06 3E-11 96.9 10.5 124 606-770 238-361 (381)
128 TIGR01186 proV glycine betaine 98.3 4.5E-06 9.8E-11 92.5 11.9 110 606-770 251-360 (363)
129 PRK10070 glycine betaine trans 98.3 4.6E-06 9.9E-11 93.6 11.2 118 597-769 274-394 (400)
130 COG3448 CBS-domain-containing 98.2 1.3E-06 2.9E-11 89.9 5.7 56 707-765 244-299 (382)
131 cd04597 CBS_pair_DRTGG_assoc2 97.9 1.7E-05 3.7E-10 72.9 6.2 54 597-655 58-111 (113)
132 PRK14869 putative manganese-de 97.9 4.1E-06 8.8E-11 98.6 1.4 160 579-766 222-391 (546)
133 TIGR00400 mgtE Mg2+ transporte 97.8 1.6E-05 3.4E-10 91.1 5.0 112 597-768 195-306 (449)
134 cd04597 CBS_pair_DRTGG_assoc2 97.8 2.5E-05 5.5E-10 71.7 4.7 55 708-765 58-112 (113)
135 COG2524 Predicted transcriptio 97.7 6.1E-05 1.3E-09 76.7 5.7 60 595-659 232-291 (294)
136 cd04603 CBS_pair_KefB_assoc Th 97.6 7.3E-05 1.6E-09 68.0 5.5 55 597-656 56-110 (111)
137 COG3620 Predicted transcriptio 97.6 5.6E-05 1.2E-09 71.5 3.7 62 706-771 63-124 (187)
138 cd04619 CBS_pair_6 The CBS dom 97.5 0.00012 2.6E-09 66.9 5.2 55 596-655 58-112 (114)
139 cd04618 CBS_pair_5 The CBS dom 97.3 0.00028 6.1E-09 63.0 4.9 48 718-767 3-50 (98)
140 cd04600 CBS_pair_HPP_assoc Thi 97.2 0.00038 8.3E-09 64.2 5.1 56 596-656 68-123 (124)
141 cd04641 CBS_pair_28 The CBS do 97.2 0.00044 9.5E-09 63.7 5.3 48 717-767 2-49 (120)
142 cd04607 CBS_pair_NTP_transfera 97.2 0.00049 1.1E-08 62.4 5.6 54 597-655 58-111 (113)
143 PRK05567 inosine 5'-monophosph 97.2 0.00059 1.3E-08 79.0 7.3 57 597-658 147-204 (486)
144 cd04620 CBS_pair_7 The CBS dom 97.2 0.00056 1.2E-08 62.2 5.6 56 596-656 57-114 (115)
145 cd04606 CBS_pair_Mg_transporte 97.2 0.00057 1.2E-08 61.6 5.4 57 596-657 52-108 (109)
146 cd04627 CBS_pair_14 The CBS do 97.2 0.00056 1.2E-08 63.2 5.3 52 599-655 70-121 (123)
147 cd04585 CBS_pair_ACT_assoc2 Th 97.2 0.00065 1.4E-08 62.1 5.7 57 595-656 65-121 (122)
148 smart00116 CBS Domain in cysta 97.1 0.00061 1.3E-08 50.8 4.4 46 718-766 2-47 (49)
149 cd04596 CBS_pair_DRTGG_assoc T 97.1 0.00074 1.6E-08 60.8 5.5 56 596-656 52-107 (108)
150 cd04617 CBS_pair_4 The CBS dom 97.1 0.0005 1.1E-08 63.1 4.4 59 596-656 57-117 (118)
151 cd04614 CBS_pair_1 The CBS dom 97.1 0.00076 1.6E-08 59.8 5.3 47 717-766 2-48 (96)
152 cd04625 CBS_pair_12 The CBS do 97.1 0.00084 1.8E-08 60.7 5.7 54 597-656 58-111 (112)
153 cd04615 CBS_pair_2 The CBS dom 97.1 0.00082 1.8E-08 60.8 5.6 56 595-655 56-111 (113)
154 cd04592 CBS_pair_EriC_assoc_eu 97.1 0.0008 1.7E-08 63.8 5.7 50 717-769 2-51 (133)
155 cd04608 CBS_pair_PALP_assoc Th 97.1 0.001 2.3E-08 61.9 6.3 52 716-770 2-53 (124)
156 cd04621 CBS_pair_8 The CBS dom 97.1 0.001 2.2E-08 63.0 6.1 56 595-656 79-134 (135)
157 cd04630 CBS_pair_17 The CBS do 97.1 0.00092 2E-08 60.8 5.6 55 596-656 59-113 (114)
158 cd04610 CBS_pair_ParBc_assoc T 97.0 0.001 2.2E-08 59.4 5.6 54 597-655 52-105 (107)
159 cd04604 CBS_pair_KpsF_GutQ_ass 97.0 0.0011 2.3E-08 60.0 5.5 55 597-656 59-113 (114)
160 cd04587 CBS_pair_CAP-ED_DUF294 97.0 0.00092 2E-08 60.4 5.1 54 597-655 58-111 (113)
161 cd04602 CBS_pair_IMPDH_2 This 97.0 0.0012 2.6E-08 60.1 5.8 54 597-655 57-112 (114)
162 cd04803 CBS_pair_15 The CBS do 97.0 0.001 2.2E-08 61.1 5.3 57 595-656 65-121 (122)
163 cd04639 CBS_pair_26 The CBS do 97.0 0.0011 2.4E-08 59.8 5.3 53 598-655 57-109 (111)
164 PRK10892 D-arabinose 5-phospha 97.0 0.001 2.3E-08 73.0 6.1 55 596-656 268-322 (326)
165 cd04613 CBS_pair_SpoIVFB_EriC_ 97.0 0.0013 2.9E-08 59.3 5.7 55 596-655 57-112 (114)
166 cd04611 CBS_pair_PAS_GGDEF_DUF 97.0 0.0013 2.8E-08 59.2 5.5 55 596-655 55-109 (111)
167 cd04635 CBS_pair_22 The CBS do 97.0 0.0012 2.6E-08 60.7 5.4 57 595-656 65-121 (122)
168 smart00116 CBS Domain in cysta 97.0 0.002 4.4E-08 47.9 5.7 47 607-658 2-48 (49)
169 cd04582 CBS_pair_ABC_OpuCA_ass 97.0 0.0015 3.3E-08 58.3 5.9 53 598-655 52-104 (106)
170 cd04583 CBS_pair_ABC_OpuCA_ass 96.9 0.0014 3.1E-08 58.6 5.5 54 597-655 54-107 (109)
171 cd04629 CBS_pair_16 The CBS do 96.9 0.001 2.3E-08 60.2 4.6 50 717-769 2-51 (114)
172 cd04802 CBS_pair_3 The CBS dom 96.9 0.0015 3.2E-08 59.0 5.6 54 596-655 57-110 (112)
173 cd04643 CBS_pair_30 The CBS do 96.9 0.0013 2.7E-08 59.8 5.2 49 717-768 2-50 (116)
174 cd04595 CBS_pair_DHH_polyA_Pol 96.9 0.0016 3.4E-08 58.7 5.8 54 596-655 55-108 (110)
175 cd04601 CBS_pair_IMPDH This cd 96.9 0.0014 3.1E-08 58.7 5.5 55 596-655 53-108 (110)
176 cd04586 CBS_pair_BON_assoc Thi 96.9 0.001 2.2E-08 62.7 4.5 55 596-656 80-134 (135)
177 cd04622 CBS_pair_9 The CBS dom 96.9 0.0012 2.7E-08 59.6 4.9 55 597-656 58-112 (113)
178 cd04623 CBS_pair_10 The CBS do 96.9 0.0018 3.9E-08 58.3 5.9 55 596-656 58-112 (113)
179 cd04588 CBS_pair_CAP-ED_DUF294 96.9 0.0016 3.5E-08 58.6 5.5 54 597-655 55-108 (110)
180 cd04631 CBS_pair_18 The CBS do 96.9 0.0016 3.4E-08 60.1 5.5 56 596-656 69-124 (125)
181 cd04800 CBS_pair_CAP-ED_DUF294 96.9 0.0014 3.1E-08 59.0 5.1 55 596-656 56-110 (111)
182 cd04591 CBS_pair_EriC_assoc_eu 96.9 0.0019 4.1E-08 58.2 5.7 49 602-656 56-104 (105)
183 cd04605 CBS_pair_MET2_assoc Th 96.9 0.0016 3.5E-08 58.5 5.3 54 598-656 56-109 (110)
184 PRK07107 inosine 5-monophospha 96.9 0.0015 3.3E-08 75.3 6.2 57 596-657 160-218 (502)
185 PRK07807 inosine 5-monophospha 96.9 0.0017 3.8E-08 74.5 6.6 59 597-660 148-206 (479)
186 PRK11543 gutQ D-arabinose 5-ph 96.8 0.0016 3.4E-08 71.4 6.1 55 597-656 263-317 (321)
187 cd04593 CBS_pair_EriC_assoc_ba 96.8 0.0018 3.9E-08 58.9 5.5 57 597-656 58-114 (115)
188 COG0517 FOG: CBS domain [Gener 96.8 0.002 4.4E-08 58.5 5.8 52 598-654 63-116 (117)
189 cd04612 CBS_pair_SpoIVFB_EriC_ 96.8 0.0022 4.8E-08 57.6 5.7 55 597-656 56-110 (111)
190 cd04589 CBS_pair_CAP-ED_DUF294 96.8 0.0022 4.7E-08 57.9 5.6 55 596-656 56-110 (111)
191 TIGR01303 IMP_DH_rel_1 IMP deh 96.8 0.002 4.3E-08 73.9 6.5 59 597-660 146-204 (475)
192 KOG1764 5'-AMP-activated prote 96.8 0.0061 1.3E-07 68.1 10.1 134 606-778 163-296 (381)
193 cd04599 CBS_pair_GGDEF_assoc2 96.8 0.0023 5E-08 56.9 5.5 53 597-655 51-103 (105)
194 cd04594 CBS_pair_EriC_assoc_ar 96.8 0.0021 4.5E-08 57.5 5.2 52 598-655 51-102 (104)
195 cd04632 CBS_pair_19 The CBS do 96.8 0.0021 4.6E-08 59.7 5.4 57 596-655 70-126 (128)
196 cd04626 CBS_pair_13 The CBS do 96.8 0.0022 4.8E-08 57.8 5.3 53 597-655 57-109 (111)
197 cd04801 CBS_pair_M50_like This 96.8 0.0016 3.5E-08 59.2 4.4 55 596-655 56-112 (114)
198 cd04642 CBS_pair_29 The CBS do 96.8 0.0027 5.8E-08 59.0 6.0 51 600-655 74-124 (126)
199 cd04633 CBS_pair_20 The CBS do 96.7 0.002 4.2E-08 59.1 5.0 55 595-655 65-119 (121)
200 PLN02274 inosine-5'-monophosph 96.7 0.0025 5.3E-08 73.8 6.7 60 596-660 162-223 (505)
201 cd04636 CBS_pair_23 The CBS do 96.7 0.0028 6E-08 59.4 5.9 54 597-656 78-131 (132)
202 COG2905 Predicted signal-trans 96.7 0.0016 3.4E-08 73.5 4.7 64 709-775 150-213 (610)
203 cd04624 CBS_pair_11 The CBS do 96.7 0.0026 5.7E-08 57.3 5.5 54 597-655 57-110 (112)
204 cd04584 CBS_pair_ACT_assoc Thi 96.6 0.0032 7E-08 57.6 5.5 56 595-656 65-120 (121)
205 cd04637 CBS_pair_24 The CBS do 96.6 0.0031 6.7E-08 57.9 5.4 55 597-656 67-121 (122)
206 cd04640 CBS_pair_27 The CBS do 96.6 0.0031 6.8E-08 58.6 5.4 46 717-765 2-47 (126)
207 TIGR01137 cysta_beta cystathio 96.6 0.0026 5.7E-08 73.2 5.4 60 707-769 334-393 (454)
208 TIGR00393 kpsF KpsF/GutQ famil 96.5 0.0028 6.1E-08 67.5 5.0 58 707-767 154-212 (268)
209 COG4109 Predicted transcriptio 96.5 0.0054 1.2E-07 65.4 6.4 62 594-660 246-307 (432)
210 TIGR01302 IMP_dehydrog inosine 96.4 0.0044 9.6E-08 71.0 6.1 59 704-765 76-137 (450)
211 cd02205 CBS_pair The CBS domai 96.4 0.0068 1.5E-07 53.8 6.0 51 717-770 2-52 (113)
212 cd04590 CBS_pair_CorC_HlyC_ass 96.4 0.0053 1.2E-07 55.2 5.1 50 717-769 2-52 (111)
213 KOG0475 Cl- channel CLC-3 and 96.3 0.015 3.2E-07 66.6 9.0 172 97-283 309-495 (696)
214 cd04598 CBS_pair_GGDEF_assoc T 96.2 0.0081 1.8E-07 54.8 5.7 55 596-655 60-117 (119)
215 PTZ00314 inosine-5'-monophosph 96.2 0.0054 1.2E-07 71.0 5.3 58 596-658 158-217 (495)
216 cd04609 CBS_pair_PALP_assoc2 T 96.1 0.0083 1.8E-07 53.6 5.1 53 597-656 57-109 (110)
217 cd04638 CBS_pair_25 The CBS do 96.1 0.0095 2.1E-07 53.2 5.1 53 598-656 53-105 (106)
218 TIGR03415 ABC_choXWV_ATP choli 96.0 0.012 2.6E-07 65.9 6.8 49 715-768 332-380 (382)
219 TIGR03520 GldE gliding motilit 96.0 0.0075 1.6E-07 68.3 5.1 57 708-766 191-249 (408)
220 cd04634 CBS_pair_21 The CBS do 96.0 0.012 2.6E-07 56.2 5.7 54 596-655 88-141 (143)
221 COG4175 ProV ABC-type proline/ 95.6 0.012 2.6E-07 62.5 4.2 111 594-768 271-383 (386)
222 PRK15094 magnesium/cobalt effl 95.6 0.017 3.7E-07 62.3 5.5 57 598-660 134-190 (292)
223 COG2239 MgtE Mg/Co/Ni transpor 95.5 0.016 3.4E-07 65.8 5.1 61 595-660 194-254 (451)
224 TIGR01186 proV glycine betaine 95.2 0.036 7.8E-07 61.7 6.4 57 598-660 303-359 (363)
225 PRK10070 glycine betaine trans 93.8 0.13 2.7E-06 58.1 6.9 58 598-661 338-395 (400)
226 KOG0474 Cl- channel CLC-7 and 92.6 0.41 8.9E-06 55.1 8.4 106 470-575 189-309 (762)
227 KOG2550 IMP dehydrogenase/GMP 92.4 0.13 2.9E-06 56.1 4.0 56 596-656 170-225 (503)
228 PRK11573 hypothetical protein; 91.8 0.23 5.1E-06 56.3 5.5 57 709-767 188-246 (413)
229 KOG2118 Predicted membrane pro 90.3 0.41 8.9E-06 55.5 5.6 133 593-775 200-335 (498)
230 COG1253 TlyC Hemolysins and re 89.7 0.4 8.7E-06 54.8 5.0 61 708-770 206-268 (429)
231 COG4535 CorC Putative Mg2+ and 86.5 0.098 2.1E-06 53.2 -2.3 61 710-772 69-131 (293)
232 TIGR03415 ABC_choXWV_ATP choli 84.4 1.7 3.7E-05 48.8 6.0 54 599-660 328-381 (382)
233 KOG0476 Cl- channel CLC-2 and 82.6 0.98 2.1E-05 53.2 3.1 66 707-773 587-652 (931)
234 COG4175 ProV ABC-type proline/ 76.5 4.4 9.6E-05 43.7 5.4 53 602-660 332-384 (386)
235 COG1125 OpuBA ABC-type proline 69.6 5.4 0.00012 41.8 4.0 42 722-766 267-308 (309)
236 PRK09765 PTS system 2-O-a-mann 68.7 2.4E+02 0.0051 34.1 18.2 44 256-310 526-571 (631)
237 TIGR02865 spore_II_E stage II 66.9 3.2E+02 0.007 33.8 22.7 83 496-579 197-289 (764)
238 PF10518 TAT_signal: TAT (twin 66.8 4.5 9.8E-05 26.8 1.8 23 250-272 3-25 (26)
239 COG1125 OpuBA ABC-type proline 59.5 13 0.00029 39.1 4.6 58 594-656 246-307 (309)
240 PRK02509 hypothetical protein; 56.5 3E+02 0.0065 34.6 15.9 20 340-359 326-345 (973)
241 PRK14216 camphor resistance pr 46.3 50 0.0011 31.2 5.9 51 250-307 5-55 (132)
242 PF01102 Glycophorin_A: Glycop 45.9 27 0.00058 32.6 3.9 17 342-358 66-82 (122)
243 COG4536 CorB Putative Mg2+ and 41.8 52 0.0011 36.4 5.8 49 606-659 276-324 (423)
244 PF10399 UCR_Fe-S_N: Ubiquitin 41.1 20 0.00043 26.7 1.8 20 247-266 7-28 (41)
245 PRK11388 DNA-binding transcrip 37.3 55 0.0012 39.5 5.9 146 571-760 14-163 (638)
246 PF10754 DUF2569: Protein of u 35.9 4E+02 0.0087 25.5 10.9 25 95-119 8-32 (149)
247 COG2216 KdpB High-affinity K+ 33.0 46 0.001 38.3 3.9 51 725-779 413-463 (681)
248 PRK09400 secE preprotein trans 31.0 1.3E+02 0.0029 24.4 5.2 31 90-120 28-59 (61)
249 PF06072 Herpes_US9: Alphaherp 29.9 2.5E+02 0.0053 22.7 6.3 8 69-76 3-10 (60)
250 PF09835 DUF2062: Uncharacteri 28.0 5.4E+02 0.012 24.6 10.1 22 249-271 16-37 (154)
251 TIGR01427 PTS_IIC_fructo PTS s 27.9 8.7E+02 0.019 26.9 13.2 31 280-310 270-300 (346)
252 PRK08319 cobalt transport prot 26.3 4E+02 0.0087 27.6 9.3 16 256-271 47-62 (224)
253 TIGR02921 PEP_integral PEP-CTE 26.2 1.2E+03 0.025 27.9 13.9 62 216-281 111-176 (952)
254 PF02990 EMP70: Endomembrane p 24.3 5.6E+02 0.012 30.2 11.1 20 339-358 301-320 (521)
255 PF04550 Phage_holin_2: Phage 23.2 3.8E+02 0.0083 23.5 6.8 50 478-529 23-72 (89)
256 KOG4267 Predicted membrane pro 22.0 1.1E+02 0.0024 27.8 3.6 43 491-533 28-72 (110)
257 TIGR00327 secE_euk_arch protei 20.7 2.7E+02 0.0059 22.6 5.2 31 91-121 25-56 (61)
No 1
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7e-172 Score=1387.17 Aligned_cols=725 Identities=56% Similarity=0.955 Sum_probs=689.3
Q ss_pred CcccccccccccccccCCCCcchhhccCCCCCCCCCCcccccchhhHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHH
Q 003801 32 SLTVPLLSHQRSRSSISNSTSQVALVGADVCPIESLDYEIAENDFFKEDWRTRGRNQMIQYIFMKWSLCFLIGLIVGLIG 111 (794)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~esldy~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~liGv~~Gl~a 111 (794)
-++||++ .++++++.++++++++++++|||||||.+||+.|+|+||++.+.+..+|.+.||+++++||+++|++|
T Consensus 28 ~l~~~l~-----~~~~t~~~~d~~i~~~k~~~yESLDYei~ENdlf~e~~r~~~k~~~~~y~~~kW~~~~lIGi~TgLva 102 (762)
T KOG0474|consen 28 ALPEELT-----ISGETQELDDLEILGAKVCDYESLDYEICENDLFLEDWRTRDKKKGRRYEAVKWMVCFLIGICTGLVA 102 (762)
T ss_pred ccccchh-----hcCCccccchhhhhcCCCCCccccchhhhcchHHHHHHHhhcccceeeeehHHHHHHHHHHHHHHHHH
Confidence 3788888 57899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhHHHHHHhhhhhhc-----chhhHHHHHHHHHHHHHHHHHHHHhhcccccCCCHHHHHHHHcCCCCCC
Q 003801 112 FLNNLAVENIAGTKFVVTSNMMLANK-----FGMAFLSFSIPNLVLTLFASIVTATVAPVAAGSGIPEVKAYLNGVDAPG 186 (794)
Q Consensus 112 ~~~~~~i~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~a~~l~~~~~p~a~GsGipev~~~lng~~~~~ 186 (794)
+++|..+|++.++|+..+.+.+.+.+ ++.+++.|+.++++++++++.++.+++|.|+||||||||+||||+++|+
T Consensus 103 ~fidl~Ven~ag~Kf~~v~~~v~~~~s~~g~~~~~~l~~~g~Nl~lv~~as~lv~~iaP~AAGSGIPevK~YLNGV~iP~ 182 (762)
T KOG0474|consen 103 LFIDLFVENFAGLKFGVVQNSVEECRSQKGCLALSLLVLLGFNLVLVFLASVLVAYIAPVAAGSGIPEVKCYLNGVKIPG 182 (762)
T ss_pred HHHHHHHHHhhchhHHHHHHHHHHhhhccccHHHHHHHHHHHhHHHHHHHHHHHHeechhccCCCCchhhhhhcCccCcc
Confidence 99999999999999999988887776 8899999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHhhhccccccCCchhHHHHHHHHHHHhhccCccccccchhhhcccCChhhhhhHHHHhhhhhhhhh
Q 003801 187 ILSFRTLVIKIIGSISAVSSSLLVGKAGPMVHTGACVASLLGQGGSKKYGLTWKWLRFFKNDRDRRDFVTCGSAAGIAAA 266 (794)
Q Consensus 187 ~~~~~tl~~K~~~~~~sv~sGlsvG~EGP~vhiGa~igs~l~~~~s~~~~l~~~~l~~f~~~~~~r~lv~~GaaAGvaaa 266 (794)
.+++||+++|++|++++|++|+.+||||||||.|||||++++||+|.+++++|||+||||||+|||||++||+|||||||
T Consensus 183 ivrl~TL~~Ki~Gvi~sV~gGL~~GKEGPMIHsGa~Vaagl~QG~S~~~r~~~r~fr~FrnDrdrRD~VscGaAAGVaAA 262 (762)
T KOG0474|consen 183 IVRLRTLIVKILGVIFSVAGGLAVGKEGPMIHSGSVVAAGLGQGGSTSLRKDWRWFRYFRNDRDRRDLVSCGAAAGVAAA 262 (762)
T ss_pred eeehhhhHHhHhhhhhhhhhhhhccCcCCeeehhHHHHhcccCCCccchhhhhhhhhhhcccchhhhhhhcchHHhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccchhHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcCcccccCCCceeEEeeccCCcccccchHHHHHH
Q 003801 267 FRAPVGGLLFAIEEMASWWRSALLWRAFFTTAIVAILLRAFIDICKSGKCGLFGTGGLIMYDVYSADASYHLADVPLVLL 346 (794)
Q Consensus 267 F~APigGvLFalE~~~~~~~~~~~~~~f~~~~va~~v~~~l~~~~~~~~~~~fg~~~~~~f~v~~~~~~~~~~~l~~~il 346 (794)
|+||+||+||++||.++||++.++||+||++++++++++.++.+|.+|+|+.|+.+++++|++.+....|+.+|++++++
T Consensus 263 F~APvGGvLFaLEE~aS~Wnq~L~WR~fFss~i~~f~l~~~i~~~~~G~~g~f~~~GLi~f~vf~~~~~y~~~el~~f~~ 342 (762)
T KOG0474|consen 263 FRAPVGGVLFALEEGASWWNQALLWRTFFSSAIVAFVLRAFILSCLSGKCGLFGKGGLINFDVFDGPVDYHIHELPPFLL 342 (762)
T ss_pred hCCCccceEEEechhhHHHHhhHHHHHHHHhHHHHHhHHHHHHHHhcCchhccCCcceEEecccCCccccccccccceeE
Confidence 99999999999999999999999999999999999999999999999999999999999999998777999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHhchhhhccCCCCCCCCCC-cCCCCCCCCccc
Q 003801 347 LGVVGGILGSLYNFLLDKVLRIYNFINEKGIAPKIFLACTISILTSCLLFGLPWLASCRPCPSDASE-ACPTIGRSGNYK 425 (794)
Q Consensus 347 lGv~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~c~~~~~~~~~-~~p~~g~~g~~~ 425 (794)
+||+||++|++||++|.+...+|.+ .+|++..|++++++++++|+++.|.+|++.+|+|||++..+ .||+
T Consensus 343 iGViGGlLGalfN~Ln~~~~~~r~~-~~k~k~~kvlea~~Vs~~ts~~af~l~~l~~C~P~~~~~~~~~~p~-------- 413 (762)
T KOG0474|consen 343 IGVIGGLLGALFNYLNLKKVLRRYN-YEKGKIGKVLEALLVSLVTSVLAFGLPFLADCQPCPPSITEGQCPT-------- 413 (762)
T ss_pred eehhhhhHHHHHHHHHHHHHHHHHh-ccCchHHHHHHHHHHHHHHHHHHhhhHHHhcCCCCCCCcccccCcc--------
Confidence 9999999999999998777766655 56788899999999999999999999999999999988665 6764
Q ss_pred ccccCCCccchhhhhhcCCcHHHHHhhhccCCCCchhhHHHHHHHHHHHHHHHHhhcCCCCcccchHHHHHHHHHhHHHH
Q 003801 426 KFQCAPGYYNDLASLIFNTNDDAIRNLFSKDTDKEFQHSSMLIFFVTCFSLSVLSYGIVAPAGLFVPAIVTGASYGRFVG 505 (794)
Q Consensus 426 ~~~c~~g~y~~la~l~~~~~~~~i~~lf~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~Psl~iGa~~G~l~g 505 (794)
|+||+|+|||+|+++|+|+||+|+++||.++ ++|++.+|++|++++++++++|||+.+|+|+|+|++++||+|||++|
T Consensus 414 -f~Cp~~~YNdlAtL~fnt~ddaVrnLFh~~~-~ef~~~tL~iFfv~yf~L~~~TfGi~vpsGlFiP~iL~GAa~GRlvg 491 (762)
T KOG0474|consen 414 -FFCPDGEYNDLATLFFNTNDDAVRNLFHSPT-NEFGILTLAIFFVLYFFLACWTFGIAVPSGLFIPVILTGAAYGRLVG 491 (762)
T ss_pred -ccCCCCchhHHHHHHcCCcHHHHHHHhcCCC-CccchhHHHHHHHHHHHHHHHHhcccccccchhHHHHhhHHHHHHHH
Confidence 8999999999999999999999999999877 99999999999999999999999999999999999999999999999
Q ss_pred HHhccccCcchHHHHHHHHhhhhhhhcchhhHHHHHHHHHhCCcchHHHHHHHHHHHHHHHhhhcchHHHHHHHHcCCCc
Q 003801 506 MLVGSHSNLNHGLYAVLGAASFLGGSMRMTVSLCVIILELTNNLLLLPMIMLVLLISKTVADAFNGNIYDLIMKAKGFPY 585 (794)
Q Consensus 506 ~~~~~~~~~~~~~~alvGaaa~l~g~~r~pls~~vi~~ElTg~~~~l~pimia~~ia~~v~~~~~~~iy~~~l~~~g~p~ 585 (794)
+++.+..++|||.||++||||+|||++|||+|+|||++|+| +..+++|+|+++++||||+|.||++|||.+++.||+|+
T Consensus 492 ~~l~~~~~id~G~yAllGAAa~LGG~mRMTvSL~VIl~E~T-n~~~~lPiMlvLliaK~VGD~FNegiYd~~i~LkgvP~ 570 (762)
T KOG0474|consen 492 MLLGSYTNIDPGLYALLGAAAFLGGVMRMTVSLCVILLELT-NNLLLLPIMLVLLIAKTVGDSFNEGIYDIIIQLKGVPF 570 (762)
T ss_pred HHHHHhhccCchHHHHHhHHHHhCCeEEEEeeeehHHHHhh-hhhhhhHHHHHHHHHHHHHhhhhhhhHHHhhhccCCcc
Confidence 99999889999999999999999999999999999999999 45677778999999999999999999999999999999
Q ss_pred cccccccccccceeccccccceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCCC
Q 003801 586 LETHVEPYMRQLTVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLP 665 (794)
Q Consensus 586 l~~~~~~~l~~l~v~diM~~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~ 665 (794)
|+++++++|++++++|+|++|+++++..++|..++++|++++||+|||||+.+.++.++++|+|.|+|++++|+++.|.+
T Consensus 571 Le~~pe~~mr~L~a~ev~~~pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~vlL~~~~f~~ 650 (762)
T KOG0474|consen 571 LEWEPEPYMRNLTAGEVMSKPVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLLVLLKKRVFVE 650 (762)
T ss_pred ccCCCchHhhhhhHhhhccCCeEEEechhhHHHHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHHHHHHhhhhhc
Confidence 99999999999999999999999999999999999999999999999999987666689999999999999999999875
Q ss_pred CC-CCCCCcccccchhhhhhccCCCCCCCccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCCEEEE
Q 003801 666 TP-NPTVNDAFSQFSAVDFAKRGSGNGDKIEDIELSEEEMEMYVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLV 744 (794)
Q Consensus 666 ~~-~~~~~~~~~~~~~~d~~~~~~~~~~~i~di~~~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpV 744 (794)
+. ...+....+.++.+|+.+ +.++++|+.++++|+++++|++|+||++|++|+++||+.+++.+||+.|+||+.|
T Consensus 651 ~~~~~~~~~~~~~~~~~d~a~----r~~~i~dv~lt~~e~~~yvDl~p~~n~sPytV~~~mSl~k~~~lFR~lGLRhLlV 726 (762)
T KOG0474|consen 651 ESRSTFDLPVRRKFTFRDFAK----REPSIEDVHLTSEEMEMYVDLHPFMNPSPYTVPETMSLAKAFILFRQLGLRHLLV 726 (762)
T ss_pred cCccccCcchhhcCCHHHhhh----cCCchhhhhcchHhHhhccccccccCCCCcccCcccchHHHHHHHHHhcceeEEE
Confidence 53 333333456888899986 6679999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCCcEEEEEecccccHHHHHhcCcccccccc
Q 003801 745 IPKISNGSPVMGILTRHDFMPEHILALNPLLARSRW 780 (794)
Q Consensus 745 Vd~~~~~g~vvGIITr~Dll~~~~~~~~~~l~~~~~ 780 (794)
|++ .++++||+||+|+++++..+.+|+..+.+.
T Consensus 727 v~~---~~~~~gilTR~D~~~~~~l~~~~~v~~~~~ 759 (762)
T KOG0474|consen 727 VPK---TNRVVGILTRKDLARYRILGLEPHVDELKM 759 (762)
T ss_pred ecC---CCceeEEEehhhhhhHHHhccccccccccc
Confidence 998 888999999999999999999999876654
No 2
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.8e-88 Score=739.75 Aligned_cols=587 Identities=28% Similarity=0.471 Sum_probs=472.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHh---------------------h------h-----hhhcchhhHHHHH
Q 003801 99 LCFLIGLIVGLIGFLNNLAVENIAGTKFVVTSN---------------------M------M-----LANKFGMAFLSFS 146 (794)
Q Consensus 99 ~~~liGv~~Gl~a~~~~~~i~~~~~~~~~~~~~---------------------~------~-----~~~~~~~~~~~~~ 146 (794)
-.++||..+|..+.+.+...+| ++|-+.+.. + . ..+.+...|++|+
T Consensus 57 g~~~IGl~ag~la~~~di~~~w--D~k~G~C~~~~~~n~~~CC~t~~~~~~c~~~~~w~~~~~~~~~w~~~~~~~~l~y~ 134 (696)
T KOG0475|consen 57 GVLLIGLAAGFLAGLADILTSW--DLKEGYCTPNFWLNHEFCCSTFTEDDVCKEWFFWCEHLGLDFSWTGHYIVSYLIYV 134 (696)
T ss_pred hhhHhHhHHHHhhHHHHhhcch--hhccCcccchhhhhhhhheeeeecCccchhhhhhHHHhccccCCCCcchHHHHHHH
Confidence 3588888888888888888776 333222110 0 0 0123445899999
Q ss_pred HHHHHHHHHHHHHHHhhcccccCCCHHHHHHHHcCCCCCCcchhHHHHHHHHHHHhhhccccccCCchhHHHHHHHHHHH
Q 003801 147 IPNLVLTLFASIVTATVAPVAAGSGIPEVKAYLNGVDAPGILSFRTLVIKIIGSISAVSSSLLVGKAGPMVHTGACVASL 226 (794)
Q Consensus 147 ~~~~~~~~~a~~l~~~~~p~a~GsGipev~~~lng~~~~~~~~~~tl~~K~~~~~~sv~sGlsvG~EGP~vhiGa~igs~ 226 (794)
.+.+.++.++..++..++|.|.||||||+|+.++|..+++++..+|++.|.++..++++||+|+|||||+||++.|+|+.
T Consensus 135 ~~al~fa~la~~lv~~~AP~A~gSGIpEIK~ilSGf~~~~~lg~~tl~iKsVal~lsvaSGLSlGKEGP~VHiA~c~g~~ 214 (696)
T KOG0475|consen 135 LWALLFAFLAVSLVKVVAPYACGSGIPEIKTILSGFIIRGFLGKWTLLIKSVALCLSVASGLSLGKEGPSVHIATCIGNI 214 (696)
T ss_pred HHHHHHHHHHHHHhhheehhhhcCCCccceeeeccchhhhhhhHHHHhhhhhhheeeeccccccCCCCCceeeeechhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCccccccchhhhcccCChhhhhhHHHHhhhhhhhhhhcccchhHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHH
Q 003801 227 LGQGGSKKYGLTWKWLRFFKNDRDRRDFVTCGSAAGIAAAFRAPVGGLLFAIEEMASWWRSALLWRAFFTTAIVAILLRA 306 (794)
Q Consensus 227 l~~~~s~~~~l~~~~l~~f~~~~~~r~lv~~GaaAGvaaaF~APigGvLFalE~~~~~~~~~~~~~~f~~~~va~~v~~~ 306 (794)
+++. +.+|-.|+..+|+.++|.+|||||+|||||||||||++||++.++..+.+|+.|||+.+|.++++.
T Consensus 215 ~s~~----------f~~~~~~e~~~reilsAaaAaGvavaFgAPIGGVlFslEev~~~fp~ktlw~sff~aLsAv~~L~~ 284 (696)
T KOG0475|consen 215 FSKI----------FPKYRLNEAKKREILSAAAAAGVAVAFGAPIGGVLFSLEEVSYYFPLKTLWRSFFCALSAVTALRS 284 (696)
T ss_pred Hhhh----------hhhhccchhHHHHHHHHHhhccchhhcCCccceeeeehhhhhhcCCccchHHHHHHHHHHHHHHee
Confidence 9872 223334888999999999999999999999999999999999999999999999999999999987
Q ss_pred HHHHhhcCcccccCCCceeEEeeccCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHH
Q 003801 307 FIDICKSGKCGLFGTGGLIMYDVYSADASYHLADVPLVLLLGVVGGILGSLYNFLLDKVLRIYNFINEKGIAPKIFLACT 386 (794)
Q Consensus 307 l~~~~~~~~~~~fg~~~~~~f~v~~~~~~~~~~~l~~~illGv~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (794)
+ ..|+++...+|.+.+ ..+|++.|+++|+++|++||+.|.+|.++|.++.+.|+.. +...++++++++
T Consensus 285 i---------~pf~~~~~vLf~V~Y-~~~W~~~EL~pFi~LGifgGl~G~~~ir~n~~~~~~rK~~--~lg~~pv~ev~~ 352 (696)
T KOG0475|consen 285 I---------NPFGNSRLVLFYVDY-DRPWSLFELLPFILLGIFGGLWGAFFIRLNIRFCRFRKSS--KLGKFPVLEVVF 352 (696)
T ss_pred e---------cccCCCceEEEEEec-cCCcccccchHHHHHHHhhhHHHHHHHHHHHHHHhccchh--hccCCcchhHHH
Confidence 5 578888888898885 6789999999999999999999999999999999988765 345678999999
Q ss_pred HHHHHHHHHhchhhhccCCCCC-CCCCCcCCCCCCCCcccccccCCCccchhhhhhcCCcHHHHHhhhccCCCCchhhHH
Q 003801 387 ISILTSCLLFGLPWLASCRPCP-SDASEACPTIGRSGNYKKFQCAPGYYNDLASLIFNTNDDAIRNLFSKDTDKEFQHSS 465 (794)
Q Consensus 387 ~~~~~~~~~~~~p~~~~c~~~~-~~~~~~~p~~g~~g~~~~~~c~~g~y~~la~l~~~~~~~~i~~lf~~~~~~~~~~~~ 465 (794)
++++|++++|+.|++.--...- ..+.++| +...-.++- ++.---....
T Consensus 353 vt~iTaiIs~~np~~r~~~~e~i~~Lf~~C--------------~~~~s~~l~-----------------~~~~~~~~~~ 401 (696)
T KOG0475|consen 353 VTLVTAIISLFNPETRFNMSELITILFNKC--------------SPSSSTSLP-----------------ETTVYSAAIL 401 (696)
T ss_pred HHHHHHHHHhcCHHHHhhHHHHHHHHHhhc--------------CCcccccCc-----------------ccchHHHHHH
Confidence 9999999999999872100000 0000111 111100000 0000012345
Q ss_pred HHHHHHHHHHHHHHhhcCCCCcccchHHHHHHHHHhHHHHHHhcc-----------ccCcchHHHHHHHHhhhhhhhcch
Q 003801 466 MLIFFVTCFSLSVLSYGIVAPAGLFVPAIVTGASYGRFVGMLVGS-----------HSNLNHGLYAVLGAASFLGGSMRM 534 (794)
Q Consensus 466 l~~~~~~k~~~t~~t~g~g~~gG~f~Psl~iGa~~G~l~g~~~~~-----------~~~~~~~~~alvGaaa~l~g~~r~ 534 (794)
|+..+++|+++|++|+|+++|+|+|+|||++||+.||++|.++.. ...+.|+.||++||||.|+|++|+
T Consensus 402 L~~a~i~k~~~t~ftfGakvP~GifvPSmaiGA~aGr~vG~~~e~l~~~~~~~~fg~~ci~Pg~Ya~vGaAA~LsGvtrl 481 (696)
T KOG0475|consen 402 LLLALILKIALTIFTFGAKVPAGIFVPSLAIGAIAGRAVGIIVEQLAQNPDFNLFGLSCATPGAYALVGAAATLSGVTRL 481 (696)
T ss_pred HHHHHHHHHHHHHhhhhccCccceecchHHHHHHHHHHHHHHHHHHhcCCCccccchhhcCchHHHHHHHHHHhcCccee
Confidence 677788999999999999999999999999999999999977654 145789999999999999999999
Q ss_pred hhHHHHHHHHHhCCcchHHHHHHHHHHHHHHHhhh-cchHHHHHHHHcCCCccccccccccccceecccccc-----cee
Q 003801 535 TVSLCVIILELTNNLLLLPMIMLVLLISKTVADAF-NGNIYDLIMKAKGFPYLETHVEPYMRQLTVGDVVTA-----PLQ 608 (794)
Q Consensus 535 pls~~vi~~ElTg~~~~l~pimia~~ia~~v~~~~-~~~iy~~~l~~~g~p~l~~~~~~~l~~l~v~diM~~-----~vv 608 (794)
|+|++|||+|+||++.+++|+|+|+++|+||+|.+ ..+|||++++.+|+||++.+.+.. +--..++|.+ ...
T Consensus 482 tvtlVVImFELTG~l~~IlPlm~av~~SkwI~d~~gk~gIyda~I~~ng~P~l~~k~e~~--~t~~~~v~~p~~~~~~L~ 559 (696)
T KOG0475|consen 482 TVTLVVIMFELTGALNYILPLMLAVMISKWIGDGLGKTGIYDAHIELNGYPFLDSKSEFS--STLAIPVMEPCRSESCLI 559 (696)
T ss_pred eEEEEEEeeeccCcceeHHHHHHHHHHHHHHHhccccchHHHHHHHhcCCCCcccccccc--cchhhhhhchhcCchhhe
Confidence 99999999999999999999999999999999999 788999999999999998776544 2333444433 355
Q ss_pred EEecc-ccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCCCCCcccccchhhhhhccC
Q 003801 609 LFHGI-EKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNPTVNDAFSQFSAVDFAKRG 687 (794)
Q Consensus 609 ~l~~~-~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 687 (794)
++..+ ++++|...+|+++++++||||-++ ++.+++|+|+|+|+...+.+..-.++-....+ ..+.++.
T Consensus 560 ~i~~~s~tl~~le~~~~~t~~sgfpvvl~~---~sq~lvGfv~rr~l~~~i~~ar~~q~~~~~~~--------~~f~~~~ 628 (696)
T KOG0475|consen 560 VITQDSMTLEDLESLMEDTDFSGFPVVLSE---DSQRLVGFVLRRNLFLAILNARKIQSFIVTTS--------IYFNDPS 628 (696)
T ss_pred eccccceeHHHHHHHHhhcccCCceEEEcc---ccceeEEEEchHHHHHHHhhhccccccceecc--------cccCCCC
Confidence 66555 999999999999999999998765 56899999999999876654221111100000 0111111
Q ss_pred CCCCCCccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCcEEEEEecccccHHH
Q 003801 688 SGNGDKIEDIELSEEEMEMYVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHDFMPEH 767 (794)
Q Consensus 688 ~~~~~~i~di~~~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~vvGIITr~Dll~~~ 767 (794)
. ......+..+|++++|+.+|++|..+++.+-+.++|++.|+++..|.+ +|++.|+||++|+++..
T Consensus 629 ~----------~~~~~~~~~~~lk~il~~tp~tv~d~tp~~~v~~~F~~lg~~~~~v~~----~G~l~Giitkkd~l~~~ 694 (696)
T KOG0475|consen 629 P----------SAVAGIPSRLDLKDILDMTPFTVTDLTPMETVVDLFRKLGLRQILVTK----NGILLGIITKKDCLRHT 694 (696)
T ss_pred c----------cccCCCCCCcCceeeccCCcccccccCcHHHHHHHHHhhCceEEEEcc----CCeeEeeeehHHHHHhh
Confidence 0 001122346889999999999999999999999999999999998876 69999999999998753
No 3
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2e-83 Score=708.02 Aligned_cols=653 Identities=26% Similarity=0.457 Sum_probs=494.6
Q ss_pred HHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhhcchhhHHHHHHHHHHHHHHHHH
Q 003801 79 EDWRTRGRNQMIQYIFMKWSLCFLIGLIVGLIGFLNNLAVENIAGTKFVVTSNMMLANKFGMAFLSFSIPNLVLTLFASI 158 (794)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~w~~~~liGv~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 158 (794)
++|..|....+.+.....|++..++|++++++++.+|++++.+++...+.... +.+......|+.|+..++.+.++++.
T Consensus 78 ~~~~~r~~q~i~r~l~eDW~flalLG~imAlvS~~mD~ai~~~~~a~~~ly~~-~~~~~~yl~yl~Wv~y~v~Li~fSA~ 156 (931)
T KOG0476|consen 78 QEFLTRQMQNIVRKLGEDWFFLALLGVIMALVSIGMDMAIESLQHAQVWLYRE-LGSSHSYLAYLSWVGYPVGLVLFSAG 156 (931)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccchhHHHHHHHHHHHHHHHHHHHH
Confidence 45655655666777889999999999999999999999999998877555433 34444557788899999999999999
Q ss_pred HHHhhcccccCCCHHHHHHHHcCCCCCCcchhHHHHHHHHHHHhhhccccccCCchhHHHHHHHHHHHhhccCccccccc
Q 003801 159 VTATVAPVAAGSGIPEVKAYLNGVDAPGILSFRTLVIKIIGSISAVSSSLLVGKAGPMVHTGACVASLLGQGGSKKYGLT 238 (794)
Q Consensus 159 l~~~~~p~a~GsGipev~~~lng~~~~~~~~~~tl~~K~~~~~~sv~sGlsvG~EGP~vhiGa~igs~l~~~~s~~~~l~ 238 (794)
.|.+++|+|-||||||+|.+|.|+...++++.||++.|++|..+++|||+++|||||+||+++++|+.+++..+.
T Consensus 157 f~h~iapQAvGSGIPEmKtIlrGv~LkeYLt~KtlvAKviGLT~tLGsGlpiGKeGPFVHiasivA~~l~k~~a~----- 231 (931)
T KOG0476|consen 157 FCHYIAPQAVGSGIPEMKTILRGVILKEYLTLKTLVAKVIGLTLTLGSGLPIGKEGPFVHIASIVAALLSKVTAC----- 231 (931)
T ss_pred HHheeccccccCCChhHHHHHHhhhHHhhhhHHHHHHHHHHhhhhhccCCCcCCCCCchhHHHHHHHHHHHHHHh-----
Confidence 999999999999999999999999999999999999999999999999999999999999999999999874221
Q ss_pred hhhhcccCChhhhhhHHHHhhhhhhhhhhcccchhHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcCcccc
Q 003801 239 WKWLRFFKNDRDRRDFVTCGSAAGIAAAFRAPVGGLLFAIEEMASWWRSALLWRAFFTTAIVAILLRAFIDICKSGKCGL 318 (794)
Q Consensus 239 ~~~l~~f~~~~~~r~lv~~GaaAGvaaaF~APigGvLFalE~~~~~~~~~~~~~~f~~~~va~~v~~~l~~~~~~~~~~~ 318 (794)
..-..|.|+....+++++|+|.|||+.|+||+|||||++|++++||..++|||.||++.++++++|.+..|.......
T Consensus 232 -~~~g~~enesR~~EmLaaaCAVGVactFsAPiGgVLfSIEvTS~yFAVrnYWRGFFAAtcsA~vFR~lavf~v~~~~t- 309 (931)
T KOG0476|consen 232 -QFGGFFENESRNMEMLAAACAVGVACTFSAPIGGVLFSIEVTSTYFAVRNYWRGFFAATCSAFVFRLLAVFFVEAEVT- 309 (931)
T ss_pred -hccccccCcchHHHHHHHHhhhhheeeecCccceeEEEEEEeeeeeeHHHHHHHHHHHHhHHHHHHHHHHHcccchhh-
Confidence 233467788888999999999999999999999999999999999999999999999999999999987664321110
Q ss_pred cCCCceeEEeecc-CCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhhcCCcchHHHHHHHHHHHHHH
Q 003801 319 FGTGGLIMYDVYS-ADASYHLADVPLVLLLGVVGGILGSLYNFLLDKVLRIYN---FINEKGIAPKIFLACTISILTSCL 394 (794)
Q Consensus 319 fg~~~~~~f~v~~-~~~~~~~~~l~~~illGv~~Gl~g~~f~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 394 (794)
-...|+.+. .+.+|.+.|+|+|+++|++||++|++|+++.+++.-+.+ ..+.-...+|++.+++++++.+.+
T Consensus 310 ----ItA~yqT~F~~d~~F~~~ELp~FallGl~cGllGa~fVylhR~ivlf~Rkn~~~~~~f~k~~llyp~~~a~v~ssl 385 (931)
T KOG0476|consen 310 ----ITALYQTSFRPDFPFDVQELPFFALLGLLCGLLGALFVYLHRRIVLFLRKNRYAKKLFQKSRLLYPAFIALVFSSL 385 (931)
T ss_pred ----hHHHHhccCCCCCCCCHHHhHHHHHHHHHHhcccceeeeeeeeeeeeehhhHHHHHHHhhCccHHHHHHHHHHhhe
Confidence 011233332 234789999999999999999999999999887643321 111111345788899888888887
Q ss_pred Hhchh---hhccCCCCCC---CCCCcCCCCCCCCcccccccCCCccchhhhhhcCCcHHHHHhhhccCCCCchhhHHHHH
Q 003801 395 LFGLP---WLASCRPCPS---DASEACPTIGRSGNYKKFQCAPGYYNDLASLIFNTNDDAIRNLFSKDTDKEFQHSSMLI 468 (794)
Q Consensus 395 ~~~~p---~~~~c~~~~~---~~~~~~p~~g~~g~~~~~~c~~g~y~~la~l~~~~~~~~i~~lf~~~~~~~~~~~~l~~ 468 (794)
.|-.- ++++-..-.. ++...|. .-..+ ...-.||+..+ ....+. ..+...+.+|++
T Consensus 386 tfP~GlG~f~aG~l~f~etl~~fF~Nct-w~~~~-~~~~~~~~~~~---------------~hW~~p-~g~~~~f~tL~l 447 (931)
T KOG0476|consen 386 TFPPGLGQFLAGRLSFRETLVDFFDNCT-WWVQT-NDSELCPAHIL---------------THWYHP-EGDVSIFGTLVL 447 (931)
T ss_pred ecCCcccccccccccHHhHHHHHhhcCe-eeecC-CCcCCCChhhh---------------hhhcCC-CCceeeHHHHHH
Confidence 66211 0000000000 0000000 00000 00001211110 011110 012233467999
Q ss_pred HHHHHHHHHHHhhcCCCCcccchHHHHHHHHHhHHHHHHhcc-----------ccCcchHHHHHHHHhhhhhhhcchhhH
Q 003801 469 FFVTCFSLSVLSYGIVAPAGLFVPAIVTGASYGRFVGMLVGS-----------HSNLNHGLYAVLGAASFLGGSMRMTVS 537 (794)
Q Consensus 469 ~~~~k~~~t~~t~g~g~~gG~f~Psl~iGa~~G~l~g~~~~~-----------~~~~~~~~~alvGaaa~l~g~~r~pls 537 (794)
|+++||++++++..+.+|+|.|+|.+.+||++||++|+.+.. ...+.||.||++|||||- |++..|+|
T Consensus 448 f~l~~F~~siia~TipvPsG~FmPvFViGAafGRlvGE~m~~lfP~Gi~~~gi~~~I~PG~YAVVGAAAfs-GaVTHTvS 526 (931)
T KOG0476|consen 448 FFLMYFWMSIIATTIPVPSGVFMPVFVIGAAFGRLVGEIMAVLFPEGIRGGGITPPIHPGGYAVVGAAAFS-GAVTHTVS 526 (931)
T ss_pred HHHHHHHHHHHHhccccCccceeeeeeechhhhhhhhhhheeecccccccCCccCccccchhhhhhhhhhc-cceeeeee
Confidence 999999999999999999999999999999999999976644 135789999999999985 55557999
Q ss_pred HHHHHHHHhCCcchHHHHHHHHHHHHHHHhhhcchHHHHHHHHcCCCcccccccc--ccccceeccccccceeEEecccc
Q 003801 538 LCVIILELTNNLLLLPMIMLVLLISKTVADAFNGNIYDLIMKAKGFPYLETHVEP--YMRQLTVGDVVTAPLQLFHGIEK 615 (794)
Q Consensus 538 ~~vi~~ElTg~~~~l~pimia~~ia~~v~~~~~~~iy~~~l~~~g~p~l~~~~~~--~l~~l~v~diM~~~vv~l~~~~s 615 (794)
..||++|+||++..++|+|+|+++|++|+.++..||||..++.|++|||+.-+.. ..+.+.|+|+|.+|+..+..+.|
T Consensus 527 vAVIifElTGQl~hiLPVmIAVllaNAVa~~LQPSiYDSII~IKklPYLPDlpps~~~~h~v~VE~iMV~dv~yI~k~~T 606 (931)
T KOG0476|consen 527 VAVIIFELTGQLCHILPVMIAVLLANAVAASLQPSIYDSIIRIKKLPYLPDLPPSRSSVHTVKVEHIMVTDVKYITKDTT 606 (931)
T ss_pred EEEEEEeeccchHHHHHHHHHHHHHHHHHHHhCcchhhheeeeccCCcCCCCCCcccceeEEEeeeeccccceeeeccCc
Confidence 9999999999999999999999999999999999999999999999999987654 35788999999999999999999
Q ss_pred HHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCCCCC---------------------------C
Q 003801 616 AGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTP---------------------------N 668 (794)
Q Consensus 616 v~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~---------------------------~ 668 (794)
.+|+.++++.+....||+||+. ++..|+|.|.|++|..+|+++.-.+.+ .
T Consensus 607 y~elre~l~~~~lR~~PlV~s~---esmiLlGSV~R~~L~~ll~~~ig~~~r~~~a~~r~r~~~E~~~~~~~~~~~ee~~ 683 (931)
T KOG0476|consen 607 YRELREALQTTTLRSFPLVESK---ESMILLGSVARRYLTALLQRHIGPEPRLVEAQKRVRTASEIFLTIFERSKKEEPP 683 (931)
T ss_pred HHHHHHHHHhCccceeccccCc---ccceeeehhHHHHHHHHHHhhcCccHhHHHHHHHhhhhhhchhhhhhhhhccCCC
Confidence 9999999998889999999987 678999999999999998763211000 0
Q ss_pred --CCC-Cc-------c-cccchhhhhhcc-------------------CCC-----------------------------
Q 003801 669 --PTV-ND-------A-FSQFSAVDFAKR-------------------GSG----------------------------- 689 (794)
Q Consensus 669 --~~~-~~-------~-~~~~~~~d~~~~-------------------~~~----------------------------- 689 (794)
..+ .+ + ...+...+-.++ .++
T Consensus 684 ~r~p~~~~~~~~~~e~s~~~~~~~et~kp~~p~~~~~p~~~~~lt~~~~sG~~~~~~~s~~~~~~~~~~p~~~~~~l~~~ 763 (931)
T KOG0476|consen 684 RRSPSRSEFFTMQRENSDIVTALGETAKPLPPSEQRLPSVVENLTPRTISGTRENALLSLRDMESPLHGPAAEHHPLHKL 763 (931)
T ss_pred CCCccccccccccccccccccccccccCCCCchhccCccccccccccccCCccccccccccccccCCCCCcccccccccc
Confidence 000 00 0 000000000000 000
Q ss_pred --CCC-------Cccc--cccc--------hhhhhcccccccc-cccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCC
Q 003801 690 --NGD-------KIED--IELS--------EEEMEMYVDLHPF-ANASPYTVVETMSLAKALILFREVGLRHLLVIPKIS 749 (794)
Q Consensus 690 --~~~-------~i~d--i~~~--------~~~~~~~idl~~i-m~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~ 749 (794)
+.. +-++ .+.. ++..+..+|+++. +++.|+...+.+||.|++.+|.-+|++|..|++
T Consensus 764 ~~r~~~~~~~~~~~~~~~~d~~~eei~~we~~~l~~~ld~~~~~IDpaPfQLve~TSL~K~HtLFSLLgL~~AYVT~--- 840 (931)
T KOG0476|consen 764 LTRQTKVNNKKQSHDDNEYDLSAEEIKEWEEEQLSQKLDLDECAIDPAPFQLVEGTSLYKVHTLFSLLGLNHAYVTS--- 840 (931)
T ss_pred cccccccccccccccccccccChhhhhHHHHHHhccccchhhCCCCCCceeeeccchHHHHHHHHHHhccchhhhcc---
Confidence 000 0000 1122 2234566777766 688999999999999999999999999999998
Q ss_pred CCCcEEEEEecccccHHHHH
Q 003801 750 NGSPVMGILTRHDFMPEHIL 769 (794)
Q Consensus 750 ~~g~vvGIITr~Dll~~~~~ 769 (794)
.||++|+|..+|+.++.-.
T Consensus 841 -~GrLvGVValkELRkAie~ 859 (931)
T KOG0476|consen 841 -CGRLVGVVALKELRKAIEN 859 (931)
T ss_pred -cCcEEEEEEHHHHHHHHHh
Confidence 5999999999999887654
No 4
>cd03685 ClC_6_like ClC-6-like chloride channel proteins. This CD includes ClC-6, ClC-7 and ClC-B, C, D in plants. Proteins in this family are ubiquitous in eukarotes and their functions are unclear. They are expressed in intracellular organelles membranes. This family belongs to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. ClC chloride ion channel superfamily perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, and transepithelial transport in animals.
Probab=100.00 E-value=5.5e-80 Score=699.98 Aligned_cols=459 Identities=54% Similarity=0.971 Sum_probs=406.9
Q ss_pred CCCCcccccchhhHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhhcchhhHHH
Q 003801 65 ESLDYEIAENDFFKEDWRTRGRNQMIQYIFMKWSLCFLIGLIVGLIGFLNNLAVENIAGTKFVVTSNMMLANKFGMAFLS 144 (794)
Q Consensus 65 esldy~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~liGv~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (794)
||+||++.||+.+|.|||+|++++...|.+.||++++++|+++|+++.+++..+++++++++....+...+...+.+|+.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~l~ilvGi~~Gl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (466)
T cd03685 1 ESLDYEVIENDLFREEWRKRKKKQVLQYEFLKWIICLLIGIFTGLVAYFIDLAVENLAGLKFLVVKNYIEKGRLFTAFLV 80 (466)
T ss_pred CCCCccccccHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999988876554444445566777
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccCCCHHHHHHHHcCCCCCCcchhHHHHHHHHHHHhhhccccccCCchhHHHHHHHHH
Q 003801 145 FSIPNLVLTLFASIVTATVAPVAAGSGIPEVKAYLNGVDAPGILSFRTLVIKIIGSISAVSSSLLVGKAGPMVHTGACVA 224 (794)
Q Consensus 145 ~~~~~~~~~~~a~~l~~~~~p~a~GsGipev~~~lng~~~~~~~~~~tl~~K~~~~~~sv~sGlsvG~EGP~vhiGa~ig 224 (794)
|+.+++++++++++++.+++|.+.||||||||+++||.+.++.+++|+++.|++++++++++|+|+|||||++|+||++|
T Consensus 81 ~~~~~~~~~li~~~l~~~~~p~a~GsGip~v~~~l~g~~~~~~l~~r~~~~K~i~~~l~vgsG~s~GrEGP~v~iGa~ig 160 (466)
T cd03685 81 YLGLNLVLVLVAALLVAYIAPTAAGSGIPEVKGYLNGVKIPHILRLKTLLVKIVGVILSVSGGLALGKEGPMIHIGACIA 160 (466)
T ss_pred HHHHHHHHHHHHHHHHHhcCcccCCCCHHHHHHHHcCcCccccchHHHHHHHHHHHHHHHhcCCCCCCCCCcchHHHHHH
Confidence 88889999999999999999999999999999999998888999999999999999999999999999999999999999
Q ss_pred HHhhccCccccccchhhhcccCChhhhhhHHHHhhhhhhhhhhcccchhHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH
Q 003801 225 SLLGQGGSKKYGLTWKWLRFFKNDRDRRDFVTCGSAAGIAAAFRAPVGGLLFAIEEMASWWRSALLWRAFFTTAIVAILL 304 (794)
Q Consensus 225 s~l~~~~s~~~~l~~~~l~~f~~~~~~r~lv~~GaaAGvaaaF~APigGvLFalE~~~~~~~~~~~~~~f~~~~va~~v~ 304 (794)
+.++|..++.++++++|+|++++++|||++++||+|||+||+|||||||++|++||+.++|+.+..|+.++++++++++.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~li~~GaAAGlaaaF~APl~G~lFa~E~l~~~~~~~~~~~~l~~s~ias~va 240 (466)
T cd03685 161 AGLSQGGSTSLRLDFRWFRYFRNDRDKRDFVTCGAAAGVAAAFGAPVGGVLFSLEEVASFWNQALTWRTFFSSMIVTFTL 240 (466)
T ss_pred HHHhhccccccccchhhhhhccCHHHHHHHHHHHhhcchhhccCCCcceeeeeeehhhhhcchhHHHHHHHHHHHHHHHH
Confidence 99998766677777789998899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCcccccCCCceeEEeeccCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHH
Q 003801 305 RAFIDICKSGKCGLFGTGGLIMYDVYSADASYHLADVPLVLLLGVVGGILGSLYNFLLDKVLRIYNFINEKGIAPKIFLA 384 (794)
Q Consensus 305 ~~l~~~~~~~~~~~fg~~~~~~f~v~~~~~~~~~~~l~~~illGv~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (794)
+.+......+....|+.++.+.|.+.....++++.|+++++++|++||++|.+|++++.++.+++++.+.+.+++|++++
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~illGi~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~l~~ 320 (466)
T cd03685 241 NFFLSGCNSGKCGLFGPGGLIMFDGSSTKYLYTYFELIPFMLIGVIGGLLGALFNHLNHKVTRFRKRINHKGKLLKVLEA 320 (466)
T ss_pred HHHHHHcCCCCccccCCccceecccccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHH
Confidence 88765544333345554555556554334568899999999999999999999999999999988776533455677777
Q ss_pred HHHHHHHHHHHhchhhhccCCCCCCCCCCcCCCCCCCCcccccccCCCccchhhhhhcCCcHHHHHhhhccCCCCchhhH
Q 003801 385 CTISILTSCLLFGLPWLASCRPCPSDASEACPTIGRSGNYKKFQCAPGYYNDLASLIFNTNDDAIRNLFSKDTDKEFQHS 464 (794)
Q Consensus 385 ~~~~~~~~~~~~~~p~~~~c~~~~~~~~~~~p~~g~~g~~~~~~c~~g~y~~la~l~~~~~~~~i~~lf~~~~~~~~~~~ 464 (794)
++++++++.+.+ ..
T Consensus 321 ~lv~~~~~~~~~------------------------------------------------------------------~~ 334 (466)
T cd03685 321 LLVSLVTSVVAF------------------------------------------------------------------PQ 334 (466)
T ss_pred HHHHHHHHHHHH------------------------------------------------------------------HH
Confidence 777776655321 12
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCcccchHHHHHHHHHhHHHHHHhccc---cCcchHHHHHHHHhhhhhhhcchhhHHHHH
Q 003801 465 SMLIFFVTCFSLSVLSYGIVAPAGLFVPAIVTGASYGRFVGMLVGSH---SNLNHGLYAVLGAASFLGGSMRMTVSLCVI 541 (794)
Q Consensus 465 ~l~~~~~~k~~~t~~t~g~g~~gG~f~Psl~iGa~~G~l~g~~~~~~---~~~~~~~~alvGaaa~l~g~~r~pls~~vi 541 (794)
.+++++++|+++|++|+|+|+|||+|+|++++||++|+++|.++... ...+|+.||++||||+++|++|+|+|+++|
T Consensus 335 ~l~~~~~~k~l~t~lt~gsG~~GGif~Psl~iGA~~G~~~g~~~~~~~~~~~~~~~~~aliGmaa~lag~~raPlt~ivi 414 (466)
T cd03685 335 TLLIFFVLYYFLACWTFGIAVPSGLFIPMILIGAAYGRLVGILLGSYFGFTSIDPGLYALLGAAAFLGGVMRMTVSLTVI 414 (466)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHHccccCCCchHHHHHHHHHHHhHHhhhhHHHHHH
Confidence 34566778999999999999999999999999999999999997652 467899999999999999999999999999
Q ss_pred HHHHhCCcchHHHHHHHHHHHHHHHhhhcchHHHHHHHHcCCCccccc
Q 003801 542 ILELTNNLLLLPMIMLVLLISKTVADAFNGNIYDLIMKAKGFPYLETH 589 (794)
Q Consensus 542 ~~ElTg~~~~l~pimia~~ia~~v~~~~~~~iy~~~l~~~g~p~l~~~ 589 (794)
++|+||++++++|+|+++++|+++++.+++++||.+++.||+||+++.
T Consensus 415 v~ElTg~~~~l~pl~ia~~iA~~va~~~~~siY~~~l~~~g~p~l~~~ 462 (466)
T cd03685 415 LLELTNNLTYLPPIMLVLMIAKWVGDYFNEGIYDIIIQLKGVPFLHNG 462 (466)
T ss_pred hhhhcCChhhHHHHHHHHHHHHHHHHHhCCCHHHHHHHhCCCccccCC
Confidence 999999999999999999999999999999999999999999999864
No 5
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=100.00 E-value=2.2e-76 Score=691.70 Aligned_cols=542 Identities=18% Similarity=0.248 Sum_probs=444.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHhhcccccCCCH-HHHH
Q 003801 98 SLCFLIGLIVGLIGFLNNLAVENIAGTKFVVTSNMMLANKFGMAFLSFSIPNLVLTLFASIVTATVAPVAAGSGI-PEVK 176 (794)
Q Consensus 98 ~~~~liGv~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~p~a~GsGi-pev~ 176 (794)
++++++|+++|+++.+|+..+++++++++....+....... .+|++.++++++++++++++..+..+.++++|+ +.++
T Consensus 26 ~~~~~vG~~~Gl~~~~f~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~p~~ggli~~~~~~~~~~~~~~~g~~~~~~ 104 (574)
T PRK01862 26 IWSAIVGIGGAFATTAFREGIELIQHLISGHSGSFVEMAKS-LPWYVRVWLPAAGGFLAGCVLLLANRGARKGGKTDYME 104 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHhhc-ccHHHHHHHHHHHHHHHHHHHHHhccccccCCcHHHHH
Confidence 47999999999999999999999999988643222211111 234444566777778888777777776664444 4566
Q ss_pred HHHcCCCCCCcchhHHHHHHHHHHHhhhccccccCCchhHHHHHHHHHHHhhccCccccccchhhhcccCChhhhhhHHH
Q 003801 177 AYLNGVDAPGILSFRTLVIKIIGSISAVSSSLLVGKAGPMVHTGACVASLLGQGGSKKYGLTWKWLRFFKNDRDRRDFVT 256 (794)
Q Consensus 177 ~~lng~~~~~~~~~~tl~~K~~~~~~sv~sGlsvG~EGP~vhiGa~igs~l~~~~s~~~~l~~~~l~~f~~~~~~r~lv~ 256 (794)
++.++ .+.+++|+.+.|++++++++++|+|+|||||++|+||++|+.+++ |++. +++++|.+++
T Consensus 105 ~~~~~---~~~~~~~~~~~k~~~~~l~i~~G~s~G~EgP~v~~ga~~~~~~~~-----------~~~~--~~~~~r~l~~ 168 (574)
T PRK01862 105 AVALG---DGVVPVRQSLWRSASSLLTIGSGGSIGREGPMVQLAALAASLVGR-----------FAHF--DPPRLRLLVA 168 (574)
T ss_pred HHHcC---CCCCChHHHHHHHHHHHHHHHcCCCcCCcchHHHHHHHHHHHHHH-----------HhCC--CHHHHHHHHH
Confidence 67665 456789999999999999999999999999999999999999997 3332 5678899999
Q ss_pred HhhhhhhhhhhcccchhHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcCcccccCCCceeEEeeccCCccc
Q 003801 257 CGSAAGIAAAFRAPVGGLLFAIEEMASWWRSALLWRAFFTTAIVAILLRAFIDICKSGKCGLFGTGGLIMYDVYSADASY 336 (794)
Q Consensus 257 ~GaaAGvaaaF~APigGvLFalE~~~~~~~~~~~~~~f~~~~va~~v~~~l~~~~~~~~~~~fg~~~~~~f~v~~~~~~~ 336 (794)
||+|||+||+||||++|++|++|++.+.|+.+.++++++++.+++++.+.+ ++..+ .|+++. ...+
T Consensus 169 ~G~aAglaa~F~aPl~g~lFa~E~~~~~~~~~~~~~~~~as~~a~~v~~~~-----------~g~~~--~~~~~~-~~~~ 234 (574)
T PRK01862 169 CGAAAGITSAYNAPIAGAFFVAEIVLGSIAMESFGPLVVASVVANIVMREF-----------AGYQP--PYEMPV-FPAV 234 (574)
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHH-----------cCCCc--eeeCCC-cCcC
Confidence 999999999999999999999999999999999999999998888888753 23343 456553 4567
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHhchhhhccCCCCCCCCCCcCC
Q 003801 337 HLADVPLVLLLGVVGGILGSLYNFLLDKVLRIYNFINEKGIAPKIFLACTISILTSCLLFGLPWLASCRPCPSDASEACP 416 (794)
Q Consensus 337 ~~~~l~~~illGv~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~c~~~~~~~~~~~p 416 (794)
+..++++++++|++||++|.+|+++..++.+++++++ .++++...+++++++++.++.|.+
T Consensus 235 ~~~~~~~~~~lGv~~G~~~~~f~~~~~~~~~~~~~~~----~~~~~~~~~~gl~~g~l~~~~p~~--------------- 295 (574)
T PRK01862 235 TGWEVLLFVALGVLCGAAAPQFLRLLDASKNQFKRLP----VPLPVRLALGGLLVGVISVWVPEV--------------- 295 (574)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC----CchhHHHHHHHHHHHHHHHHHHHH---------------
Confidence 8899999999999999999999999999888776543 223455667788888888888876
Q ss_pred CCCCCCcccccccCCCccchhhhhhcCCcHHHHHhhhccCCCCchhhHHHHHHHHHHHHHHHHhhcCCCCcccchHHHHH
Q 003801 417 TIGRSGNYKKFQCAPGYYNDLASLIFNTNDDAIRNLFSKDTDKEFQHSSMLIFFVTCFSLSVLSYGIVAPAGLFVPAIVT 496 (794)
Q Consensus 417 ~~g~~g~~~~~~c~~g~y~~la~l~~~~~~~~i~~lf~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~Psl~i 496 (794)
.| ++++.++.++++ ...+..++.++++|+++|++|+|+|+|||+|.|++++
T Consensus 296 -~g------------------------~G~~~i~~~~~~----~~~~~~l~~~~~~K~~~t~~t~g~G~~GG~f~P~l~i 346 (574)
T PRK01862 296 -WG------------------------NGYSVVNTILHA----PWTWQALVAVLVAKLIATAATAGSGAVGGVFTPTLFV 346 (574)
T ss_pred -hc------------------------CCHHHHHHHHcC----CchHHHHHHHHHHHHHHHHHHHccCCCccchhhHHHH
Confidence 22 122345555542 3455667778889999999999999999999999999
Q ss_pred HHHHhHHHHHHhccc---cCcchHHHHHHHHhhhhhhhcchhhHHHHHHHHHhCCcchHHHHHHHHHHHHHHHhhh-cch
Q 003801 497 GASYGRFVGMLVGSH---SNLNHGLYAVLGAASFLGGSMRMTVSLCVIILELTNNLLLLPMIMLVLLISKTVADAF-NGN 572 (794)
Q Consensus 497 Ga~~G~l~g~~~~~~---~~~~~~~~alvGaaa~l~g~~r~pls~~vi~~ElTg~~~~l~pimia~~ia~~v~~~~-~~~ 572 (794)
||++|+++|.+++.. ...+|+.|+++||||+++|++|+|++++++++|+|+++++++|+|+++++|+++++.+ .++
T Consensus 347 Ga~~G~~~g~~~~~~~~~~~~~~~~~a~vGmaa~~aa~~~aPlt~i~l~~Elt~~~~~~~P~~ia~~~a~~v~~~~~~~~ 426 (574)
T PRK01862 347 GAVVGSLFGLAMHALWPGHTSAPFAYAMVGMGAFLAGATQAPLMAILMIFEMTLSYQVVLPLMVSCVVAYFTARALGTTS 426 (574)
T ss_pred HHHHHHHHHHHHHHhCCCcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHhCCCC
Confidence 999999999987652 1245778999999999999999999999999999999999999999999999999988 799
Q ss_pred HHHHHHHHcCCCccccccccccccceeccccccceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHH
Q 003801 573 IYDLIMKAKGFPYLETHVEPYMRQLTVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRA 652 (794)
Q Consensus 573 iy~~~l~~~g~p~l~~~~~~~l~~l~v~diM~~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~ 652 (794)
+|+.++++++.+ .+.+.+++++++|+|+++..+++++++++|+.+.+++++++.+||+|++ ++++|+|+++
T Consensus 427 iy~~~~~~~~~~----~~~~~L~~~~V~dim~~~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~~-----g~lvGiVt~~ 497 (574)
T PRK01862 427 MYEITLRRHQDE----AERERLRTTQMRELIQPAQTVVPPTASVADMTRVFLEYPVKYLYVVDDD-----GRFRGAVALK 497 (574)
T ss_pred hHHHHHHhcccc----chhhHHhhCcHHHHhcCCCceeCCCCCHHHHHHHHHhCCCceEEEEcCC-----CeEEEEEEHH
Confidence 999999988642 3456789999999999999999999999999999999999999999987 8999999999
Q ss_pred HHHHHHHhccCCCCCCCCCCcccccchhhhhhccCCCCCCCccccccchhhhhcccccccccccCCceecCCCCHHHHHH
Q 003801 653 HLITLLKKKAFLPTPNPTVNDAFSQFSAVDFAKRGSGNGDKIEDIELSEEEMEMYVDLHPFANASPYTVVETMSLAKALI 732 (794)
Q Consensus 653 dL~~lL~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~di~~~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~ 732 (794)
|+.+.+.+.. . +...++.++|++++.++++++++.++.+
T Consensus 498 dL~~~l~~~~----~-------------------------------------~~~~~v~dim~~~~~~v~~d~~L~~al~ 536 (574)
T PRK01862 498 DITSDLLDKR----D-------------------------------------TTDKTAADYAHTPFPLLTPDMPLGDALE 536 (574)
T ss_pred HHHHHhhccc----c-------------------------------------cccchHHHhccCCCeeECCCCCHHHHHH
Confidence 9976443211 0 0012356788888999999999999999
Q ss_pred HHHHcCCCEEEEeecCCCCCcEEEEEecccccHHHHH
Q 003801 733 LFREVGLRHLLVIPKISNGSPVMGILTRHDFMPEHIL 769 (794)
Q Consensus 733 lf~~~glr~LpVVd~~~~~g~vvGIITr~Dll~~~~~ 769 (794)
+|.+++.+++||+|+ +++++++|+||++|+++++.+
T Consensus 537 ~m~~~~~~~lpVVd~-~~~~~liGvIt~~DIl~~l~~ 572 (574)
T PRK01862 537 HFMAFQGERLPVVES-EASPTLAGVVYKTSLLDAYRR 572 (574)
T ss_pred HHHhcCCCeeeeEeC-CCCCeEEEEEEHHHHHHHHHh
Confidence 999999999999987 122589999999999987654
No 6
>cd03684 ClC_3_like ClC-3-like chloride channel proteins. This CD includes ClC-3, ClC-4, ClC-5 and ClC-Y1. ClC-3 was initially cloned from rat kidney. Expression of ClC-3 produces outwardly-rectifying Cl currents that are inhibited by protein kinase C activation. It has been suggested that ClC-3 may be a ubiquitous swelling-activated Cl channel that has very similar characteristics to those of native volume-regulated Cl currents. The function of ClC-4 is unclear. Studies of human ClC-4 have revealed that it gives rise to Cl currents that rapidly activate at positive voltages, and are sensitive to extracellular pH, with currents decreasing when pH falls below 6.5. ClC-4 is broadly distributed, especially in brain and heart. ClC-5 is predominantly expressed in the kidney, but can be found in the brain and liver. Mutations in the ClC-5 gene cause certain hereditary diseases, including Dent's disease, an X-chromosome linked syndrome characterised by proteinuria, hypercalciuria, and kidn
Probab=100.00 E-value=2.3e-70 Score=618.63 Aligned_cols=423 Identities=34% Similarity=0.606 Sum_probs=351.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHhhcccccCCCHHHHHHHHcCCC
Q 003801 104 GLIVGLIGFLNNLAVENIAGTKFVVTSNMMLANKFGMAFLSFSIPNLVLTLFASIVTATVAPVAAGSGIPEVKAYLNGVD 183 (794)
Q Consensus 104 Gv~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~p~a~GsGipev~~~lng~~ 183 (794)
|+++|+++..++..++|+.+++.... +|++|+++++++++++++++.+++|.++||||||||+++||.+
T Consensus 1 g~~~g~~~~~i~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~i~~~l~~~~~p~a~GsGIp~v~~~l~g~~ 69 (445)
T cd03684 1 GIAIGLIAGLIDIIASWLSDLKEGYC-----------NYIIYVLLALLFAFIAVLLVKVVAPYAAGSGIPEIKTILSGFI 69 (445)
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHhHH-----------HHHHHHHHHHHHHHHHHHHHHhcCccccCCCHHHHHHHHcCcc
Confidence 78999999999999999988776542 4667788888999999999999999999999999999999988
Q ss_pred CCCcchhHHHHHHHHHHHhhhccccccCCchhHHHHHHHHHHHhhccCccccccchhhhccc-CChhhhhhHHHHhhhhh
Q 003801 184 APGILSFRTLVIKIIGSISAVSSSLLVGKAGPMVHTGACVASLLGQGGSKKYGLTWKWLRFF-KNDRDRRDFVTCGSAAG 262 (794)
Q Consensus 184 ~~~~~~~~tl~~K~~~~~~sv~sGlsvG~EGP~vhiGa~igs~l~~~~s~~~~l~~~~l~~f-~~~~~~r~lv~~GaaAG 262 (794)
.++.+++|++++|++++++++++|+|+|||||+||+||++|+.++| |++.+ +|++|||++++||+|||
T Consensus 70 ~~~~~~~~~~~~k~l~~~l~i~~G~s~GrEGP~v~iGa~ia~~l~~-----------~~~~~~~~~~~~r~li~~GaaAG 138 (445)
T cd03684 70 IRGFLGKWTLLIKSVGLVLAVASGLSLGKEGPLVHIATCVGNIISR-----------LFPKYRRNEAKRREILSAAAAAG 138 (445)
T ss_pred ccccccHHHHHHHHHhhHHhhccCCcCCCCCCcchHHHHHHHHHHH-----------HHHHhccCHHHHHHHHHHHHhhh
Confidence 8999999999999999999999999999999999999999999986 44333 37899999999999999
Q ss_pred hhhhhcccchhHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcCcccccCCCceeEEeeccCCcccccchHH
Q 003801 263 IAAAFRAPVGGLLFAIEEMASWWRSALLWRAFFTTAIVAILLRAFIDICKSGKCGLFGTGGLIMYDVYSADASYHLADVP 342 (794)
Q Consensus 263 vaaaF~APigGvLFalE~~~~~~~~~~~~~~f~~~~va~~v~~~l~~~~~~~~~~~fg~~~~~~f~v~~~~~~~~~~~l~ 342 (794)
+||+|||||||++|++||+.++|+.+.+|++++++++++++.+.+. .++.++...|+++. ..+++..|++
T Consensus 139 laAaF~APi~G~lFalE~l~~~~~~~~l~~~~~as~~a~~v~~~~~---------~~~~~~~~~f~~~~-~~~~~~~~l~ 208 (445)
T cd03684 139 VAVAFGAPIGGVLFSLEEVSYYFPLKTLWRSFFCALVAAFTLKSLN---------PFGTGRLVLFEVEY-DRDWHYFELI 208 (445)
T ss_pred hHHhcCCccchhhhhhHhhhhhccHHHHHHHHHHHHHHHHHHHHhc---------ccCCCCceEEeccC-CCCccHHHHH
Confidence 9999999999999999999999999999999999999998888652 34444545666543 4567889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHhchhhhccCCCCCCCCCCcCCCCCCCC
Q 003801 343 LVLLLGVVGGILGSLYNFLLDKVLRIYNFINEKGIAPKIFLACTISILTSCLLFGLPWLASCRPCPSDASEACPTIGRSG 422 (794)
Q Consensus 343 ~~illGv~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~c~~~~~~~~~~~p~~g~~g 422 (794)
+++++|++||++|.+|+++++++.+++++.+. +.++++++++++++++++.++.|+... .|.
T Consensus 209 ~~i~lGi~~Gl~g~lf~~~~~~~~~~~~~~~~--~~~~~~~~~l~~l~~~~l~~~~p~~~~--------------~g~-- 270 (445)
T cd03684 209 PFILLGIFGGLYGAFFIKANIKWARFRKKSLL--KRYPVLEVLLVALITALISFPNPYTRL--------------DMT-- 270 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--chhHHHHHHHHHHHHHHHHhChHHHcc--------------chh--
Confidence 99999999999999999999999998876541 235678889999999999999998721 000
Q ss_pred ccc-cc--ccCCCccchhhhhhcCCcHHHHHhhhccCCCCchhhHHHHHHHHHHHHHHHHhhcCCCCcccchHHHHHHHH
Q 003801 423 NYK-KF--QCAPGYYNDLASLIFNTNDDAIRNLFSKDTDKEFQHSSMLIFFVTCFSLSVLSYGIVAPAGLFVPAIVTGAS 499 (794)
Q Consensus 423 ~~~-~~--~c~~g~y~~la~l~~~~~~~~i~~lf~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~Psl~iGa~ 499 (794)
+.. ++ .|.+...+...+.. .. .+ ..........+++++++|+++|++|+|+|+|||+|+|++++||+
T Consensus 271 ~~i~~l~~~~~~~~~~~~~~~~--------~~-~~-~~~~~~~~~~l~~~~l~K~~~t~lt~gsG~~GG~f~P~l~iGA~ 340 (445)
T cd03684 271 ELLELLFNECEPGDDNSLCCYR--------DP-PA-GDGVYKALWSLLLALIIKLLLTIFTFGIKVPAGIFVPSMAVGAL 340 (445)
T ss_pred hHHHHHHhcCCCcccccccccc--------cc-cC-CccchhHHHHHHHHHHHHHHHHHHHHcCCCCcceeHHHHHHHHH
Confidence 000 00 01100000000000 00 00 00111234567778899999999999999999999999999999
Q ss_pred HhHHHHHHhccc-----------------cCcchHHHHHHHHhhhhhhhcchhhHHHHHHHHHhCCcchHHHHHHHHHHH
Q 003801 500 YGRFVGMLVGSH-----------------SNLNHGLYAVLGAASFLGGSMRMTVSLCVIILELTNNLLLLPMIMLVLLIS 562 (794)
Q Consensus 500 ~G~l~g~~~~~~-----------------~~~~~~~~alvGaaa~l~g~~r~pls~~vi~~ElTg~~~~l~pimia~~ia 562 (794)
+|+++|.+++.. ...+|+.||++||||++++++|+|+|+++|++|+||++++++|+|+++++|
T Consensus 341 ~G~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~alvGmaa~~a~~~raPlt~ivlv~ElTg~~~~l~pl~ia~~iA 420 (445)
T cd03684 341 FGRIVGILVEQLAYSYPDSIFFACCTAGPSCITPGLYAMVGAAAFLGGVTRMTVSLVVIMFELTGALNYILPLMIAVMVS 420 (445)
T ss_pred HhHHHHHHHHHHHhhCCcccccccccCCCCccCchHHHHHHHHHHhcchhccchhhhheeeeccCCcccHHHHHHHHHHH
Confidence 999999998632 246889999999999999999999999999999999999999999999999
Q ss_pred HHHHhhh-cchHHHHHHHHcCCCcc
Q 003801 563 KTVADAF-NGNIYDLIMKAKGFPYL 586 (794)
Q Consensus 563 ~~v~~~~-~~~iy~~~l~~~g~p~l 586 (794)
+++++.+ .+++||.+++.||+|||
T Consensus 421 ~~vs~~~~~~siY~~~l~~~g~p~l 445 (445)
T cd03684 421 KWVADAIGKEGIYDAHIHLNGYPFL 445 (445)
T ss_pred HHHHHHhCCCCHHHHHHHhcCCCCC
Confidence 9999999 58999999999999996
No 7
>cd03683 ClC_1_like ClC-1-like chloride channel proteins. This CD includes isoforms ClC-0, ClC-1, ClC-2 and ClC_K. ClC-1 is expressed in skeletal muscle and its mutation leads to both recessively and dominantly-inherited forms of muscle stiffness or myotonia. ClC-K is exclusively expressed in kidney. Similarly, mutation of ClC-K leads to nephrogenic diabetes insipidus in mice and Bartter's syndrome in human. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. This domain is found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins, that perform a variety of functions including cell volume regulation, regulation of intracelluar chloride concentration, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles and transepithelia
Probab=100.00 E-value=7.6e-68 Score=595.48 Aligned_cols=411 Identities=32% Similarity=0.579 Sum_probs=345.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHhhcccccCCCHHHHH
Q 003801 97 WSLCFLIGLIVGLIGFLNNLAVENIAGTKFVVTSNMMLANKFGMAFLSFSIPNLVLTLFASIVTATVAPVAAGSGIPEVK 176 (794)
Q Consensus 97 w~~~~liGv~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~p~a~GsGipev~ 176 (794)
|++.+++|+++|+++.+++..++++++++.....+. +++++..|+.|+.+++++++++++++.+++|.++||||||||
T Consensus 2 w~~~~l~gv~~Gl~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~p~a~GsGIp~v~ 79 (426)
T cd03683 2 WLFLALLGILMALISIAMDFAVEKLLNARRWLYSLL--TGNSLLQYLVWVAYPVALVLFSALFCKYISPQAVGSGIPEMK 79 (426)
T ss_pred eEeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--ccchHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCCCHHHHH
Confidence 888999999999999999999999998887654331 233456678888889999999999999999999999999999
Q ss_pred HHHcCCCCCCcchhHHHHHHHHHHHhhhccccccCCchhHHHHHHHHHHHhhccCccccccchhhhcccCChhhhhhHHH
Q 003801 177 AYLNGVDAPGILSFRTLVIKIIGSISAVSSSLLVGKAGPMVHTGACVASLLGQGGSKKYGLTWKWLRFFKNDRDRRDFVT 256 (794)
Q Consensus 177 ~~lng~~~~~~~~~~tl~~K~~~~~~sv~sGlsvG~EGP~vhiGa~igs~l~~~~s~~~~l~~~~l~~f~~~~~~r~lv~ 256 (794)
++++|.+.++.+++|+++.|++++++++++|+|+|||||+||+||++|+.++|. ++.+ . ..++|+++||++++
T Consensus 80 ~~l~g~~~~~~l~~r~~~~k~i~~~l~i~sG~svGrEGP~v~iGa~i~~~~~~~----~~~~--~-~~~~~~~~rr~Li~ 152 (426)
T cd03683 80 TILRGVVLPEYLTFKTLVAKVIGLTCALGSGLPLGKEGPFVHISSIVAALLSKL----TTFF--S-GIYENESRRMEMLA 152 (426)
T ss_pred HHHcCCCccccccHHHHHHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHHHHhh----cccc--c-ccccCHHHHHHHHH
Confidence 999999889999999999999999999999999999999999999999999872 2210 0 01457889999999
Q ss_pred HhhhhhhhhhhcccchhHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcCcccccCCCceeEEeec-cCCcc
Q 003801 257 CGSAAGIAAAFRAPVGGLLFAIEEMASWWRSALLWRAFFTTAIVAILLRAFIDICKSGKCGLFGTGGLIMYDVY-SADAS 335 (794)
Q Consensus 257 ~GaaAGvaaaF~APigGvLFalE~~~~~~~~~~~~~~f~~~~va~~v~~~l~~~~~~~~~~~fg~~~~~~f~v~-~~~~~ 335 (794)
||+|||+||+||||+||++|++||++++|+.+.+|+++++|++++++.+.+.++..... ..+ . .|... .....
T Consensus 153 ~GaaAGlaAaF~APlaGvlFalE~l~~~~~~~~~~~~~i~s~~a~~v~~~~~~~~~~~~-~~~---~--~~~~~~~~~~~ 226 (426)
T cd03683 153 AACAVGVACTFGAPIGGVLFSIEVTSTYFAVRNYWRGFFAATCGAFTFRLLAVFFSDQE-TIT---A--LFKTTFFVDFP 226 (426)
T ss_pred hHhhhhhHHhcCCcceeeEEEeehhhhhccHHHHHHHHHHHHHHHHHHHHHHhhcCCCc-ccc---c--cccccccCCCC
Confidence 99999999999999999999999999999999999999999999998876644321100 000 0 02111 11345
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---cCCcchHHHHHHHHHHHHHHHhchhhhccCCCCCCCCC
Q 003801 336 YHLADVPLVLLLGVVGGILGSLYNFLLDKVLRIYNFINE---KGIAPKIFLACTISILTSCLLFGLPWLASCRPCPSDAS 412 (794)
Q Consensus 336 ~~~~~l~~~illGv~~Gl~g~~f~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~p~~~~c~~~~~~~~ 412 (794)
++..++++++++|+++|++|.+|++++.++.+++++.+. ..+..+++++++++++++++.+ |
T Consensus 227 ~~~~~l~~~i~lGv~~Gl~g~lf~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~--p------------- 291 (426)
T cd03683 227 FDVQELPIFALLGIICGLLGALFVFLHRKIVRFRRKNRLFSKFLKRSPLLYPAIVALLTAVLTF--P------------- 291 (426)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHHH--H-------------
Confidence 788899999999999999999999999999888765432 1234567788888877765422 1
Q ss_pred CcCCCCCCCCcccccccCCCccchhhhhhcCCcHHHHHhhhccCCCCchhhHHHHHHHHHHHHHHHHhhcCCCCcccchH
Q 003801 413 EACPTIGRSGNYKKFQCAPGYYNDLASLIFNTNDDAIRNLFSKDTDKEFQHSSMLIFFVTCFSLSVLSYGIVAPAGLFVP 492 (794)
Q Consensus 413 ~~~p~~g~~g~~~~~~c~~g~y~~la~l~~~~~~~~i~~lf~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~P 492 (794)
...+++++++|+++|++|+|+|+|||+|+|
T Consensus 292 --------------------------------------------------~~~l~~~~~~K~~~t~~t~gsG~~GGif~P 321 (426)
T cd03683 292 --------------------------------------------------FLTLFLFIVVKFVLTALAITLPVPAGIFMP 321 (426)
T ss_pred --------------------------------------------------HHHHHHHHHHHHHHHHHHHhCCCChhhhHH
Confidence 134566788999999999999999999999
Q ss_pred HHHHHHHHhHHHHHHhcccc----------CcchHHHHHHHHhhhhhhhcchhhHHHHHHHHHhCCcchHHHHHHHHHHH
Q 003801 493 AIVTGASYGRFVGMLVGSHS----------NLNHGLYAVLGAASFLGGSMRMTVSLCVIILELTNNLLLLPMIMLVLLIS 562 (794)
Q Consensus 493 sl~iGa~~G~l~g~~~~~~~----------~~~~~~~alvGaaa~l~g~~r~pls~~vi~~ElTg~~~~l~pimia~~ia 562 (794)
++++||++|+++|.++.... ..+|+.||++||||+++|++|+|.++ +|++|+||++++++|+|+++++|
T Consensus 322 sl~iGa~~G~~~g~~~~~~~p~~~~~~~~~~~~~~~~alvGmaa~~a~~~ra~~t~-vlv~E~Tg~~~~llpl~ia~~ia 400 (426)
T cd03683 322 VFVIGAALGRLVGEIMAVLFPEGIRGGISNPIGPGGYAVVGAAAFSGAVTHTVSVA-VIIFELTGQISHLLPVLIAVLIS 400 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHcCcccccCCCCCcCchHHHHHHHHHHHHHHHhHHHHH-heeeeecCCcchHHHHHHHHHHH
Confidence 99999999999999886532 36799999999999999999986655 79999999999999999999999
Q ss_pred HHHHhhhcchHHHHHHHHcCCCcccc
Q 003801 563 KTVADAFNGNIYDLIMKAKGFPYLET 588 (794)
Q Consensus 563 ~~v~~~~~~~iy~~~l~~~g~p~l~~ 588 (794)
+++++.+++++||.+++.|++||+|+
T Consensus 401 ~~v~~~~~~~iY~~~l~~~~~p~l~~ 426 (426)
T cd03683 401 NAVAQFLQPSIYDSIIKIKKLPYLPD 426 (426)
T ss_pred HHHHHhhCCCHHHHHHHhCCCCCCCC
Confidence 99999998899999999999999974
No 8
>cd01036 ClC_euk Chloride channel, ClC. These domains are found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins that perform a variety of functions including cell volume regulation, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles, signal transduction and transepithelial transport. They are also involved in many pathophysiological processes and are responsible for a number of human diseases. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. Some proteins possess long C-terminal cytoplasmic regions containing two CBS (cystathionine beta synthase) domains of putative regulatory function.
Probab=100.00 E-value=3.1e-67 Score=589.32 Aligned_cols=403 Identities=37% Similarity=0.619 Sum_probs=342.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHhhcccccCCCHHHHHHHHcCCC
Q 003801 104 GLIVGLIGFLNNLAVENIAGTKFVVTSNMMLANKFGMAFLSFSIPNLVLTLFASIVTATVAPVAAGSGIPEVKAYLNGVD 183 (794)
Q Consensus 104 Gv~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~p~a~GsGipev~~~lng~~ 183 (794)
|+++|+++.+++..++++++++.....+. .++++..|+.|+.+++++++++++++.+++|.++||||||||+++||.+
T Consensus 1 ~~~~Glv~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGIp~v~~~l~g~~ 78 (416)
T cd01036 1 GLLMGLVAVVLDYAVESSLDAGQWLLRRI--PGSYLLGYLMWVLWSVVLVLISSGICLYFAPQAAGSGIPEVMAYLNGVH 78 (416)
T ss_pred CeeehHHHHHHHHHHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCHHHHHHHHcCCc
Confidence 67899999999999999999998876542 3345567777888999999999999999999999999999999999999
Q ss_pred CCCcchhHHHHHHHHHHHhhhccccccCCchhHHHHHHHHHHHhhccCccccccchhhhcccCChhhhhhHHHHhhhhhh
Q 003801 184 APGILSFRTLVIKIIGSISAVSSSLLVGKAGPMVHTGACVASLLGQGGSKKYGLTWKWLRFFKNDRDRRDFVTCGSAAGI 263 (794)
Q Consensus 184 ~~~~~~~~tl~~K~~~~~~sv~sGlsvG~EGP~vhiGa~igs~l~~~~s~~~~l~~~~l~~f~~~~~~r~lv~~GaaAGv 263 (794)
.|+.+++|+++.|++++++++++|+|+|||||+||+||++|+.++|..++.++...+|+++++|++|||++++||+|||+
T Consensus 79 ~~~~l~~~~~~~K~i~~~l~igsG~svGrEGP~V~iGa~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~r~ll~aGaaAGl 158 (416)
T cd01036 79 LPMYLSIRTLIAKTISCICAVASGLPLGKEGPLVHLGAMIGAGLLQGRSRTLGCHVHLFQLFRNPRDRRDFLVAGAAAGV 158 (416)
T ss_pred ccccccHHHHHHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHHHHhhcccccccccchhhhccCHHHHHHHHHHHhhcch
Confidence 99999999999999999999999999999999999999999999985443333334567777899999999999999999
Q ss_pred hhhhcccchhHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcCcccccCCC-ceeEEeeccCCcccccchHH
Q 003801 264 AAAFRAPVGGLLFAIEEMASWWRSALLWRAFFTTAIVAILLRAFIDICKSGKCGLFGTG-GLIMYDVYSADASYHLADVP 342 (794)
Q Consensus 264 aaaF~APigGvLFalE~~~~~~~~~~~~~~f~~~~va~~v~~~l~~~~~~~~~~~fg~~-~~~~f~v~~~~~~~~~~~l~ 342 (794)
||+|||||+|++|++||+.++|+.+.+|++++++.+++++.+.+.++........+..+ ....++++ ...+++..|++
T Consensus 159 aAaF~APiaGvlFalE~~~~~~~~~~~~~~~~as~~a~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~ 237 (416)
T cd01036 159 ASAFGAPIGGLLFVLEEVSTFFPVRLAWRVFFAALVSAFVIQIYNSFNSGFELLDRSSAMFLSLTVFE-LHVPLNLYEFI 237 (416)
T ss_pred hhccCCcceeeeeeeHHhhccccHHHHHHHHHHHHHHHHHHHHhccccCCccccccccccceeccccC-CCCCCCHHHHH
Confidence 99999999999999999999999999999999999999988876443211000000000 00122233 24567889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cCCcchHHHHHHHHHHHHHHHhchhhhccCCCCCCCCCCcCCCCCCC
Q 003801 343 LVLLLGVVGGILGSLYNFLLDKVLRIYNFINE-KGIAPKIFLACTISILTSCLLFGLPWLASCRPCPSDASEACPTIGRS 421 (794)
Q Consensus 343 ~~illGv~~Gl~g~~f~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~~c~~~~~~~~~~~p~~g~~ 421 (794)
+++++|++||++|.+|+++++++.+++++.+. +.+++|++++++++++++++.+
T Consensus 238 ~~illGv~~G~~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~------------------------- 292 (416)
T cd01036 238 PTVVIGVICGLLAALFVRLSIIFLRWRRRLLFRKTARYRVLEPVLFTLIYSTIHY------------------------- 292 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHH-------------------------
Confidence 99999999999999999999999998876532 2356688888888888777543
Q ss_pred CcccccccCCCccchhhhhhcCCcHHHHHhhhccCCCCchhhHHHHHHHHHHHHHHHHhhcCCCCcccchHHHHHHHHHh
Q 003801 422 GNYKKFQCAPGYYNDLASLIFNTNDDAIRNLFSKDTDKEFQHSSMLIFFVTCFSLSVLSYGIVAPAGLFVPAIVTGASYG 501 (794)
Q Consensus 422 g~~~~~~c~~g~y~~la~l~~~~~~~~i~~lf~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~Psl~iGa~~G 501 (794)
...++++++.|+++|++|+|+|+|||+|+|++++||++|
T Consensus 293 -----------------------------------------~~~l~~~~~~K~~~t~~t~~sg~pGG~f~Psl~iGA~~G 331 (416)
T cd01036 293 -----------------------------------------APTLLLFLLIYFWMSALAFGIAVPGGTFIPSLVIGAAIG 331 (416)
T ss_pred -----------------------------------------HHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHH
Confidence 123556778999999999999999999999999999999
Q ss_pred HHHHHHhccc-----------cCcchHHHHHHHHhhhhhhhcchhhHHHHHHHHHhCCcchHHHHHHHHHHHHHHHhhhc
Q 003801 502 RFVGMLVGSH-----------SNLNHGLYAVLGAASFLGGSMRMTVSLCVIILELTNNLLLLPMIMLVLLISKTVADAFN 570 (794)
Q Consensus 502 ~l~g~~~~~~-----------~~~~~~~~alvGaaa~l~g~~r~pls~~vi~~ElTg~~~~l~pimia~~ia~~v~~~~~ 570 (794)
+++|.+++.. ...+|+.||++||||+++|++|+|+|+++|++|+||++++++|+|+++++|+++++.++
T Consensus 332 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~alvGmaa~l~~~~r~Plt~~vi~~ElTg~~~~l~pl~ia~~ia~~v~~~~~ 411 (416)
T cd01036 332 RLVGLLVHRIAVAGIGAESATLWADPGVYALIGAAAFLGGTTRLTFSICVIMMELTGDLHHLLPLMVAILIAKAVADAFC 411 (416)
T ss_pred HHHHHHHHHHccccccccccCCccChHHHHHHHHHHHhhhhhcchHhhhhheeeccCChhhHHHHHHHHHHHHHHHHhhC
Confidence 9999987642 13789999999999999999999999999999999999999999999999999999999
Q ss_pred chHHH
Q 003801 571 GNIYD 575 (794)
Q Consensus 571 ~~iy~ 575 (794)
+|+||
T Consensus 412 ~siY~ 416 (416)
T cd01036 412 ESLYH 416 (416)
T ss_pred CCCCC
Confidence 89996
No 9
>PRK01610 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=100.00 E-value=9.1e-60 Score=527.75 Aligned_cols=408 Identities=18% Similarity=0.264 Sum_probs=330.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH-hhhhhhcchhhHHHHHHHHHHHHHHHHHHHHhhcc--cccCCC
Q 003801 95 MKWSLCFLIGLIVGLIGFLNNLAVENIAGTKFVVTS-NMMLANKFGMAFLSFSIPNLVLTLFASIVTATVAP--VAAGSG 171 (794)
Q Consensus 95 ~~w~~~~liGv~~Gl~a~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~p--~a~GsG 171 (794)
++|++++++|+++|+.+.+|+..+++++++.+.... +.....+...+| ++.+++++.+++++++.+++.| ..+++|
T Consensus 3 ~~~~~a~~iG~~~G~~~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~p~~ggll~g~~~~~~~~~~~~~~~g 81 (418)
T PRK01610 3 RRLLIATVVGILAALAVAGFRHAMLLLEWLFLSNDSGSLVNAATNLSPW-RRLLTPALGGLAAGLLLWGWQKFTQQRPHA 81 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchhhcccccchH-HHHHHHHHHHHHHHHHHHHHcccccccCCC
Confidence 456799999999999999999999998776543211 111111112233 4456777888888888887776 477899
Q ss_pred HHHHHHHHcCCCCCCcchhHHHHHHHHHHHhhhccccccCCchhHHHHHHHHHHHhhccCccccccchhhhcccCChhhh
Q 003801 172 IPEVKAYLNGVDAPGILSFRTLVIKIIGSISAVSSSLLVGKAGPMVHTGACVASLLGQGGSKKYGLTWKWLRFFKNDRDR 251 (794)
Q Consensus 172 ipev~~~lng~~~~~~~~~~tl~~K~~~~~~sv~sGlsvG~EGP~vhiGa~igs~l~~~~s~~~~l~~~~l~~f~~~~~~ 251 (794)
++++++.++. ++.+++|+.+.|++++++++++|+|+|||||++|+|+++|++++| |++ +++||
T Consensus 82 ~~~vi~av~~---~g~~~~~~~~~k~~~~~l~igsG~S~GrEGP~v~iGa~~g~~~~~-----------~~~---~~~~~ 144 (418)
T PRK01610 82 PTDYMEALQT---DGQFDYAASLVKSLASLLVVTSGSAIGREGAMILLAALAASCFAQ-----------RFT---PRQEW 144 (418)
T ss_pred cHHHHHHHHc---CCCCCccHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHH-----------HhC---ChHHH
Confidence 9999887775 467899999999999999999999999999999999999999997 333 56889
Q ss_pred hhHHHHhhhhhhhhhhcccchhHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcCcccccCCCceeEEeecc
Q 003801 252 RDFVTCGSAAGIAAAFRAPVGGLLFAIEEMASWWRSALLWRAFFTTAIVAILLRAFIDICKSGKCGLFGTGGLIMYDVYS 331 (794)
Q Consensus 252 r~lv~~GaaAGvaaaF~APigGvLFalE~~~~~~~~~~~~~~f~~~~va~~v~~~l~~~~~~~~~~~fg~~~~~~f~v~~ 331 (794)
|++++||+|||+||+||||++|++|++|++.+.++.+.+.++++++.+++++.+.+ ++..+ ..|+++.
T Consensus 145 r~li~~GaaAGlaa~F~aPlaG~lFa~E~l~~~~~~~~~~p~~ias~~a~~v~~~~-----------~g~~~-~~~~i~~ 212 (418)
T PRK01610 145 KLWIACGAAAGMASAYHAPLAGSLFIAEILFGTLMLASLGPVVISAVVALLTTNLL-----------NGSDA-LLYNVQL 212 (418)
T ss_pred HHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-----------cCCCC-CeeecCC
Confidence 99999999999999999999999999999998888887788887777777766643 23221 2466653
Q ss_pred CCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHhchhhhccCCCCCCCC
Q 003801 332 ADASYHLADVPLVLLLGVVGGILGSLYNFLLDKVLRIYNFINEKGIAPKIFLACTISILTSCLLFGLPWLASCRPCPSDA 411 (794)
Q Consensus 332 ~~~~~~~~~l~~~illGv~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~c~~~~~~~ 411 (794)
...++..++++++++|+++|++|.+|+++.++..+++++++ .++++.+.+.+++++++.++.|.+
T Consensus 213 -~~~~~~~~l~~~i~lGii~Gl~g~~f~~~~~~~~~~~~~~~----~~~~~~~~lggli~g~l~~~~p~~---------- 277 (418)
T PRK01610 213 -SVTVQARDYALIISTGLLAGLCGPLLLTLMNASHRGFVSLK----LAPPWQLALGGLIVGLLSLFTPAV---------- 277 (418)
T ss_pred -cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc----cchhHHHHHHHHHHHHHHHHhhHH----------
Confidence 45678899999999999999999999999998887776543 223456678888999998888876
Q ss_pred CCcCCCCCCCCcccccccCCCccchhhhhhcCCcHHHHHhhhccCCCCchhhHHHHHHHHHHHHHHHHhhcCCCCcccch
Q 003801 412 SEACPTIGRSGNYKKFQCAPGYYNDLASLIFNTNDDAIRNLFSKDTDKEFQHSSMLIFFVTCFSLSVLSYGIVAPAGLFV 491 (794)
Q Consensus 412 ~~~~p~~g~~g~~~~~~c~~g~y~~la~l~~~~~~~~i~~lf~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~ 491 (794)
.| ++++.++.+++. +.....++.++++|+++|++|+|+|++||+|.
T Consensus 278 ------~G------------------------~G~~~i~~~~~~----~~~~~~l~~l~l~K~~~t~lt~gsG~~GG~f~ 323 (418)
T PRK01610 278 ------WG------------------------NGYSVVQSFLTA----PPLLMLIAGIFLCKLLAVLASSGSGAPGGVFT 323 (418)
T ss_pred ------hC------------------------CcHHHHHHHHcC----ChhHHHHHHHHHHHHHHHHHHHhcCCCchhhH
Confidence 22 122334444432 23445566678899999999999999999999
Q ss_pred HHHHHHHHHhHHHHHHhccc---cCcchHHHHHHHHhhhhhhhcchhhHHHHHHHHHhCCcchHHHHHHHHHHHHHHHhh
Q 003801 492 PAIVTGASYGRFVGMLVGSH---SNLNHGLYAVLGAASFLGGSMRMTVSLCVIILELTNNLLLLPMIMLVLLISKTVADA 568 (794)
Q Consensus 492 Psl~iGa~~G~l~g~~~~~~---~~~~~~~~alvGaaa~l~g~~r~pls~~vi~~ElTg~~~~l~pimia~~ia~~v~~~ 568 (794)
|++++||++|.++|++++.. ...++..||++||+|++++++|+|++++++++|+||++++++|+|+++++|+++++.
T Consensus 324 P~l~iGa~~G~~~g~~~~~~~~~~~~~~~~~a~vGmaA~laa~~~aPltaivl~~Eltg~~~~~~p~~ia~~ia~~vs~~ 403 (418)
T PRK01610 324 PTLFVGLAIGMLYGRSLGLWLPDGEEITLLLGLTGMATLLAATTHAPIMSTLMICEMTGEYQLLPGLLIACVIASVISRT 403 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998742 223468999999999999999999999999999999999999999999999999998
Q ss_pred h-cchHHHHHHHHc
Q 003801 569 F-NGNIYDLIMKAK 581 (794)
Q Consensus 569 ~-~~~iy~~~l~~~ 581 (794)
+ ++++|+.++..+
T Consensus 404 ~~~~siy~~~~~~~ 417 (418)
T PRK01610 404 LRRDSIYRQHTAEH 417 (418)
T ss_pred hCCCCchHHHHhcc
Confidence 8 999999998754
No 10
>cd01031 EriC ClC chloride channel EriC. This domain is found in the EriC chloride transporters that mediate the extreme acid resistance response in eubacteria and archaea. This response allows bacteria to survive in the acidic environments by decarboxylation-linked proton utilization. As shown for Escherichia coli EriC, these channels can counterbalance the electric current produced by the outwardly directed virtual proton pump linked to amino acid decarboxylation. The EriC proteins belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge. In Escherichia coli EriC, a glutamate residue that protrudes into the pore is thought to participate in gating by binding to a Cl- ion site within the selectivity filter.
Probab=100.00 E-value=1.5e-59 Score=526.79 Aligned_cols=398 Identities=30% Similarity=0.519 Sum_probs=338.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHhhcccccCCCHHHHHHHHcCC
Q 003801 103 IGLIVGLIGFLNNLAVENIAGTKFVVTSNMMLANKFGMAFLSFSIPNLVLTLFASIVTATVAPVAAGSGIPEVKAYLNGV 182 (794)
Q Consensus 103 iGv~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~p~a~GsGipev~~~lng~ 182 (794)
+|+++|+++.+|+..+++++++++....... +....|+.++.++.++++++++++.++.|.++|+|+|+++++++|.
T Consensus 1 iGi~~G~~~~~f~~~i~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~~~~~l~~~~~p~~~g~G~~~v~~~l~~~ 77 (402)
T cd01031 1 IGLLAGLVAVLFRLGIDKLGNLRLSLYDFAA---NNPPLLLVLPLISAVLGLLAGWLVKKFAPEAKGSGIPQVEGVLAGL 77 (402)
T ss_pred CeehHhHHHHHHHHHHHHHHHHHHHHHHhcc---cccHHHHHHHHHHHHHHHHHHHHHHhcCCccCCCCHHHHHHHHcCC
Confidence 5899999999999999999999887643321 2223445566677788888889988899999999999999999986
Q ss_pred CCCCcchhHHHHHHHHHHHhhhccccccCCchhHHHHHHHHHHHhhccCccccccchhhhcccCChhhhhhHHHHhhhhh
Q 003801 183 DAPGILSFRTLVIKIIGSISAVSSSLLVGKAGPMVHTGACVASLLGQGGSKKYGLTWKWLRFFKNDRDRRDFVTCGSAAG 262 (794)
Q Consensus 183 ~~~~~~~~~tl~~K~~~~~~sv~sGlsvG~EGP~vhiGa~igs~l~~~~s~~~~l~~~~l~~f~~~~~~r~lv~~GaaAG 262 (794)
. +.+++|+++.|++++++++++|+|+|||||++|+|+++|+++++ +++. +++++|++++||+|||
T Consensus 78 ~--~~~~~~~~~~k~~~~~l~~gsG~s~G~EgP~v~iga~ig~~~~~-----------~~~~--~~~~~~~l~~~g~aag 142 (402)
T cd01031 78 L--PPNWWRVLPVKFVGGVLALGSGLSLGREGPSVQIGAAIGQGVSK-----------WFKT--SPEERRQLIAAGAAAG 142 (402)
T ss_pred C--CcccHHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHH-----------HhcC--CHHHHHHHHHHHHHHh
Confidence 4 35678999999999999999999999999999999999999987 3332 5788999999999999
Q ss_pred hhhhhcccchhHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcCcccccCCCceeEEeeccCCcccccchHH
Q 003801 263 IAAAFRAPVGGLLFAIEEMASWWRSALLWRAFFTTAIVAILLRAFIDICKSGKCGLFGTGGLIMYDVYSADASYHLADVP 342 (794)
Q Consensus 263 vaaaF~APigGvLFalE~~~~~~~~~~~~~~f~~~~va~~v~~~l~~~~~~~~~~~fg~~~~~~f~v~~~~~~~~~~~l~ 342 (794)
++|+||||++|++|++|++.++|+.+.+++.++++.+++++.+.+ +++++ .|.++. ...++..|++
T Consensus 143 ~aa~f~aPl~g~lf~~E~~~~~~~~~~~~~~~~a~~~a~~v~~~~-----------~~~~~--~~~~~~-~~~~~~~~l~ 208 (402)
T cd01031 143 LAAAFNAPLAGVLFVLEELRHSFSPLALLTALVASIAADFVSRLF-----------FGLGP--VLSIPP-LPALPLKSYW 208 (402)
T ss_pred HHHHhCCccHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHH-----------cCCCc--eEecCC-CCCCCHHHHH
Confidence 999999999999999999999998889999999999998888753 34444 355543 4568889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHhchhhhccCCCCCCCCCCcCCCCCCCC
Q 003801 343 LVLLLGVVGGILGSLYNFLLDKVLRIYNFINEKGIAPKIFLACTISILTSCLLFGLPWLASCRPCPSDASEACPTIGRSG 422 (794)
Q Consensus 343 ~~illGv~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~c~~~~~~~~~~~p~~g~~g 422 (794)
+++++|+++|++|.+|++++.++.+++++.++ ..+.+.+.+.+++++++.++.|+. .|
T Consensus 209 ~~illGv~~G~~g~~f~~~~~~~~~~~~~~~~---~~~~~~~~l~gl~~~~~~~~~p~~----------------~g--- 266 (402)
T cd01031 209 LLLLLGIIAGLLGYLFNRSLLKSQDLYRKLKK---LPRELRVLLPGLLIGPLGLLLPEA----------------LG--- 266 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---CChhHHHHHHHHHHHHHHHHHHHH----------------hC---
Confidence 99999999999999999999999888876532 234555677788888888888876 22
Q ss_pred cccccccCCCccchhhhhhcCCcHHHHHhhhccCCCCchhhHHHHHHHHHHHHHHHHhhcCCCCcccchHHHHHHHHHhH
Q 003801 423 NYKKFQCAPGYYNDLASLIFNTNDDAIRNLFSKDTDKEFQHSSMLIFFVTCFSLSVLSYGIVAPAGLFVPAIVTGASYGR 502 (794)
Q Consensus 423 ~~~~~~c~~g~y~~la~l~~~~~~~~i~~lf~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~Psl~iGa~~G~ 502 (794)
++++.++.+++ +++++..++++++.|+++|++|+|+|++||+|+|++++||++|+
T Consensus 267 ---------------------~G~~~i~~~~~----~~~~~~~l~~~~~~K~~~t~lt~~~G~~GG~f~Psl~iGa~~G~ 321 (402)
T cd01031 267 ---------------------GGHGLILSLAG----GNFSISLLLLIFVLRFIFTMLSYGSGAPGGIFAPMLALGALLGL 321 (402)
T ss_pred ---------------------CHHHHHHHHHc----CCchHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 12344555554 24566778888999999999999999999999999999999999
Q ss_pred HHHHHhccc---cCcchHHHHHHHHhhhhhhhcchhhHHHHHHHHHhCCcchHHHHHHHHHHHHHHHhhh-cchHHHHHH
Q 003801 503 FVGMLVGSH---SNLNHGLYAVLGAASFLGGSMRMTVSLCVIILELTNNLLLLPMIMLVLLISKTVADAF-NGNIYDLIM 578 (794)
Q Consensus 503 l~g~~~~~~---~~~~~~~~alvGaaa~l~g~~r~pls~~vi~~ElTg~~~~l~pimia~~ia~~v~~~~-~~~iy~~~l 578 (794)
++|++++.. ...+|+.||++||+|++++++|+|++++++++|+||++++++|+|+++++|+++++.+ ++++||.++
T Consensus 322 ~~g~~~~~~~~~~~~~~~~~a~~G~aa~~a~~~~aPlta~vl~~Eltg~~~~l~p~~ia~~ia~~v~~~~~~~siY~~~l 401 (402)
T cd01031 322 LFGTILVQLGPIPISAPATFAIAGMAAFFAAVVRAPITAIILVTEMTGNFNLLLPLMVVCLVAYLVADLLGGKPIYEALL 401 (402)
T ss_pred HHHHHHHHhcCcccccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHhCCCChhHHHh
Confidence 999988752 3578999999999999999999999999999999999999999999999999999998 999999987
Q ss_pred H
Q 003801 579 K 579 (794)
Q Consensus 579 ~ 579 (794)
+
T Consensus 402 ~ 402 (402)
T cd01031 402 E 402 (402)
T ss_pred C
Confidence 4
No 11
>PRK05277 chloride channel protein; Provisional
Probab=100.00 E-value=1.7e-58 Score=523.22 Aligned_cols=410 Identities=26% Similarity=0.466 Sum_probs=334.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHhhcccccCCCHHHHHH
Q 003801 98 SLCFLIGLIVGLIGFLNNLAVENIAGTKFVVTSNMMLANKFGMAFLSFSIPNLVLTLFASIVTATVAPVAAGSGIPEVKA 177 (794)
Q Consensus 98 ~~~~liGv~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~p~a~GsGipev~~ 177 (794)
++++++|+++|+++.+|+..+++++++++....+. ....+..|.+++..+.+++.++.+++.++.|.++|+|+||+++
T Consensus 2 ~~~i~iGi~~Gl~~~~f~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~p~~~GsGi~~i~~ 79 (438)
T PRK05277 2 FMAAVVGTLTGLVGVAFELAVDWVQNQRLGLLASV--ADNGLLLWIVAFLISAVLAMIGYFLVRRFAPEAGGSGIPEIEG 79 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cccchHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCHHHHHH
Confidence 46889999999999999999999999987764321 1112233444556677777788889999999999999999999
Q ss_pred HHcCCCCCCcchhHHHHHHHHHHHhhhccccccCCchhHHHHHHHHHHHhhccCccccccchhhhcccCChhhhhhHHHH
Q 003801 178 YLNGVDAPGILSFRTLVIKIIGSISAVSSSLLVGKAGPMVHTGACVASLLGQGGSKKYGLTWKWLRFFKNDRDRRDFVTC 257 (794)
Q Consensus 178 ~lng~~~~~~~~~~tl~~K~~~~~~sv~sGlsvG~EGP~vhiGa~igs~l~~~~s~~~~l~~~~l~~f~~~~~~r~lv~~ 257 (794)
+++|.+.. ...++++.|++++++++++|+|+|||||++|+|+++|+++++ ++++ +++.++|++++|
T Consensus 80 ~l~~~~~~--~~~~~~~~k~~~~~l~~gsG~s~G~EgP~v~iGa~ig~~~~~----~~~~--------~~~~~~~~li~~ 145 (438)
T PRK05277 80 ALEGLRPV--RWWRVLPVKFFGGLGTLGSGMVLGREGPTVQMGGNIGRMVLD----IFRL--------RSDEARHTLLAA 145 (438)
T ss_pred HHcCCCcc--chHHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHH----Hccc--------CCHHHHHHHHHH
Confidence 99985422 236789999999999999999999999999999999999987 2322 256789999999
Q ss_pred hhhhhhhhhhcccchhHHHHHHHHhhhh--hhhHHHHHHHHHHHHHHHHHHHHHHhhcCcccccCCCceeEEeeccCCcc
Q 003801 258 GSAAGIAAAFRAPVGGLLFAIEEMASWW--RSALLWRAFFTTAIVAILLRAFIDICKSGKCGLFGTGGLIMYDVYSADAS 335 (794)
Q Consensus 258 GaaAGvaaaF~APigGvLFalE~~~~~~--~~~~~~~~f~~~~va~~v~~~l~~~~~~~~~~~fg~~~~~~f~v~~~~~~ 335 (794)
|+|||+||+||||++|++|++|++.+.+ +.+.+++.++++++++++.+.+ ++..+ .|+++. ...
T Consensus 146 G~aaglaa~f~APl~g~lf~~E~~~~~~~~~~~~~~~~~~a~~~a~~v~~~~-----------~g~~~--~~~~~~-~~~ 211 (438)
T PRK05277 146 GAAAGLAAAFNAPLAGILFVIEEMRPQFRYSLISIKAVFIGVIMATIVFRLF-----------NGEQA--VIEVGK-FSA 211 (438)
T ss_pred HHHHhHHHhcCCchHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHh-----------cCCCc--eEeccC-CCC
Confidence 9999999999999999999999998744 6666788888888888877753 23333 345542 234
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHhchhhhccCCCCCCCCCCcC
Q 003801 336 YHLADVPLVLLLGVVGGILGSLYNFLLDKVLRIYNFINEKGIAPKIFLACTISILTSCLLFGLPWLASCRPCPSDASEAC 415 (794)
Q Consensus 336 ~~~~~l~~~illGv~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~c~~~~~~~~~~~ 415 (794)
++..++++++++|+++|++|++|+++..++.+++++++.+..++.++.+.+++++++++.++.|..
T Consensus 212 ~~~~~l~~~i~lGi~~G~~g~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gl~~g~l~~~~p~~-------------- 277 (438)
T PRK05277 212 PPLNTLWLFLLLGIIFGIFGVLFNKLLLRTQDLFDRLHGGNKKRWVLMGGAVGGLCGLLGLLAPAA-------------- 277 (438)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHhhhh--------------
Confidence 567889999999999999999999999999988877643222223345667777888887776654
Q ss_pred CCCCCCCcccccccCCCccchhhhhhcCCcHHHHHhhhccCCCCchhhHHHHHHHHHHHHHHHHhhcCCCCcccchHHHH
Q 003801 416 PTIGRSGNYKKFQCAPGYYNDLASLIFNTNDDAIRNLFSKDTDKEFQHSSMLIFFVTCFSLSVLSYGIVAPAGLFVPAIV 495 (794)
Q Consensus 416 p~~g~~g~~~~~~c~~g~y~~la~l~~~~~~~~i~~lf~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~Psl~ 495 (794)
.| ++++.++..+++ ++++..++.++++|++++++|+|+|+|||+|.|+++
T Consensus 278 --~g------------------------~G~~~i~~~~~~----~~~~~~l~~~~~~K~i~t~ls~gsG~~GG~f~Psl~ 327 (438)
T PRK05277 278 --VG------------------------GGFNLIPIALAG----NFSIGMLLFIFVARFITTLLCFGSGAPGGIFAPMLA 327 (438)
T ss_pred --cC------------------------ChHHHHHHHHcC----CchHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHH
Confidence 22 123445555442 355666777889999999999999999999999999
Q ss_pred HHHHHhHHHHHHhccc---cCcchHHHHHHHHhhhhhhhcchhhHHHHHHHHHhCCcchHHHHHHHHHHHHHHHhhh-cc
Q 003801 496 TGASYGRFVGMLVGSH---SNLNHGLYAVLGAASFLGGSMRMTVSLCVIILELTNNLLLLPMIMLVLLISKTVADAF-NG 571 (794)
Q Consensus 496 iGa~~G~l~g~~~~~~---~~~~~~~~alvGaaa~l~g~~r~pls~~vi~~ElTg~~~~l~pimia~~ia~~v~~~~-~~ 571 (794)
+||++|+++|.++... ...+|..|+++||+|++++++|+|+|++++++|+||++++++|+|+++++|+++++.+ ++
T Consensus 328 iGa~~G~~~g~~~~~~~p~~~~~~~~~a~~G~aA~la~~~~aPlt~~v~~~Eltg~~~~l~p~lia~~~A~~v~~~~~~~ 407 (438)
T PRK05277 328 LGTLLGLAFGMVAAALFPQYHIEPGTFAIAGMGALFAATVRAPLTGIVLVLEMTDNYQLILPLIITCLGATLLAQFLGGK 407 (438)
T ss_pred HHHHHHHHHHHHHHHHcCcccccHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHhCCC
Confidence 9999999999987652 3578999999999999999999999999999999999999999999999999999999 79
Q ss_pred hHHHHHHHHc
Q 003801 572 NIYDLIMKAK 581 (794)
Q Consensus 572 ~iy~~~l~~~ 581 (794)
++|+.++++.
T Consensus 408 ~iy~~~l~~~ 417 (438)
T PRK05277 408 PIYSALLERT 417 (438)
T ss_pred ChHHHHHHHH
Confidence 9999999865
No 12
>cd01034 EriC_like ClC chloride channel family. These protein sequences, closely related to the ClC Eric family, are putative halogen ion (Cl-, Br- and I-) transport proteins found in eubacteria. They belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=100.00 E-value=9.9e-57 Score=501.49 Aligned_cols=385 Identities=26% Similarity=0.362 Sum_probs=308.5
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHhhcccccCCCHHHHHHHHcCC---CC
Q 003801 108 GLIGFLNNLAVENIAGTKFVVTSNMMLANKFGMAFLSFSIPNLVLTLFASIVTATVAPVAAGSGIPEVKAYLNGV---DA 184 (794)
Q Consensus 108 Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~p~a~GsGipev~~~lng~---~~ 184 (794)
|+++..++..+++++++.+..... + +|+.+++.+++++ +..+++.+++|.++||||||+++++++. +.
T Consensus 1 g~~~~~~~~~~~~~~~~~~~~~~~-----~---~~~~~~~~p~~~~-~~~~~~~~~~p~~~gsGi~~v~~~~~~~~~~~~ 71 (390)
T cd01034 1 GLVALLFAKLADLALALFQRLTAT-----H---PWLPLLLTPAGFA-LIAWLTRRFFPGAAGSGIPQVIAALELPSAAAR 71 (390)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHh-----c---hHHHHHHHHHHHH-HHHHHHHhhCCCCCCCCHHHHHHHHcccccccc
Confidence 567888999999999888755321 1 3344445565554 4556677799999999999999999853 35
Q ss_pred CCcchhHHHHHHHHHHHhhhccccccCCchhHHHHHHHHHHHhhccCccccccchhhhcccCChhhhhhHHHHhhhhhhh
Q 003801 185 PGILSFRTLVIKIIGSISAVSSSLLVGKAGPMVHTGACVASLLGQGGSKKYGLTWKWLRFFKNDRDRRDFVTCGSAAGIA 264 (794)
Q Consensus 185 ~~~~~~~tl~~K~~~~~~sv~sGlsvG~EGP~vhiGa~igs~l~~~~s~~~~l~~~~l~~f~~~~~~r~lv~~GaaAGva 264 (794)
++.+++|+++.|++++++++++|+|+|||||++|+|+++|+.++| ++++ ++++|||++++||+|||+|
T Consensus 72 ~~~~~~r~~~~k~i~~~l~i~~G~s~GrEGP~v~iga~i~~~~~~----~~~~--------~~~~~~r~li~~GaaAGla 139 (390)
T cd01034 72 RRLLSLRTAVGKILLTLLGLLGGASVGREGPSVQIGAAVMLAIGR----RLPK--------WGGLSERGLILAGGAAGLA 139 (390)
T ss_pred cccccHHHHHHHHHHHHHHHHcCCCcCCcccHHHHHHHHHHHHHH----Hccc--------CchHHHHHHHHHHHHHhHH
Confidence 678999999999999999999999999999999999999999997 3332 1368999999999999999
Q ss_pred hhhcccchhHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcCcccccCCCceeEEeeccCCcccccchHHHH
Q 003801 265 AAFRAPVGGLLFAIEEMASWWRSALLWRAFFTTAIVAILLRAFIDICKSGKCGLFGTGGLIMYDVYSADASYHLADVPLV 344 (794)
Q Consensus 265 aaF~APigGvLFalE~~~~~~~~~~~~~~f~~~~va~~v~~~l~~~~~~~~~~~fg~~~~~~f~v~~~~~~~~~~~l~~~ 344 (794)
|+||||++|++|++||+.++|+.+..++.+.++.+++++.+.+ ++..+ .|+++. ...+++.+++++
T Consensus 140 a~F~aPlaG~lF~~E~~~~~~~~~~~~~~~~~~~~a~~~~~~~-----------~g~~~--~f~~~~-~~~~~~~~~~~~ 205 (390)
T cd01034 140 AAFNTPLAGIVFAIEELSRDFELRFSGLVLLAVIAAGLVSLAV-----------LGNYP--YFGVAA-VALPLGEAWLLV 205 (390)
T ss_pred HHhCCcchhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH-----------cCCCC--ccCCCC-CCcCCHHHHHHH
Confidence 9999999999999999999999888888888888887776643 23333 344442 223567889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCcchHHHHHHHHHHHHHHHhchhhhccCCCCCCCCCCcCCCCCCCCc
Q 003801 345 LLLGVVGGILGSLYNFLLDKVLRIYNFINEK-GIAPKIFLACTISILTSCLLFGLPWLASCRPCPSDASEACPTIGRSGN 423 (794)
Q Consensus 345 illGv~~Gl~g~~f~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~c~~~~~~~~~~~p~~g~~g~ 423 (794)
+++|+++|++|.+|++...++.+++++...+ ...++++.+.+.+++++++.++.|.. .
T Consensus 206 illGii~G~~g~lF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~----------------~----- 264 (390)
T cd01034 206 LVCGVVGGLAGGLFARLLVALSSGLPGWVRRFRRRRPVLFAALCGLALALIGLVSGGL----------------T----- 264 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHHHHhCCCc----------------c-----
Confidence 9999999999999999999998887764322 22334566667777777776654321 0
Q ss_pred ccccccCCCccchhhhhhcCCcHHHHHhhhccCCCCchhhHHHHHHHHHHHHHHHHhhcCCCCcccchHHHHHHHHHhHH
Q 003801 424 YKKFQCAPGYYNDLASLIFNTNDDAIRNLFSKDTDKEFQHSSMLIFFVTCFSLSVLSYGIVAPAGLFVPAIVTGASYGRF 503 (794)
Q Consensus 424 ~~~~~c~~g~y~~la~l~~~~~~~~i~~lf~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~Psl~iGa~~G~l 503 (794)
++++++.++.+++++. .. ...++++|+++|++|+|+|+|||.|.|++++||++|++
T Consensus 265 ------------------~G~G~~~i~~~~~~~~--~~----~~~~~l~K~i~t~lt~gsG~~gG~f~P~l~iGa~~G~~ 320 (390)
T cd01034 265 ------------------FGTGYLQARAALEGGG--GL----PLWFGLLKFLATLLSYWSGIPGGLFAPSLAVGAGLGSL 320 (390)
T ss_pred ------------------ccCcHHHHHHHHhCCC--cc----cHHHHHHHHHHHHHHHHcCCCcceechHHHHHHHHHHH
Confidence 1123344555554321 11 23456799999999999999999999999999999999
Q ss_pred HHHHhccccCcchHHHHHHHHhhhhhhhcchhhHHHHHHHHHhCCcchHHHHHHHHHHHHHHHhhh-cchHHH
Q 003801 504 VGMLVGSHSNLNHGLYAVLGAASFLGGSMRMTVSLCVIILELTNNLLLLPMIMLVLLISKTVADAF-NGNIYD 575 (794)
Q Consensus 504 ~g~~~~~~~~~~~~~~alvGaaa~l~g~~r~pls~~vi~~ElTg~~~~l~pimia~~ia~~v~~~~-~~~iy~ 575 (794)
++.+++ ..+|..|+++||+|++++++|+|++++++++|+||++++++|+|+++++|+++++.+ ++++||
T Consensus 321 ~~~~~~---~~~~~~~a~~G~aA~laa~~~aPlt~~vl~~Elt~~~~~l~p~lia~~~A~~v~~~~~~~~iY~ 390 (390)
T cd01034 321 LAALLG---SVSQGALVLLGMAAFLAGVTQAPLTAFVIVMEMTGDQQMLLPLLAAALLASGVSRLVCPEPLYH 390 (390)
T ss_pred HHHHhc---CCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 999985 358999999999999999999999999999999999999999999999999999988 788885
No 13
>cd01033 ClC_like Putative ClC chloride channel. Clc proteins are putative halogen ion (Cl-, Br- and I-) transporters found in eubacteria. They belong to the ClC superfamily of halogen ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=100.00 E-value=1.4e-56 Score=498.71 Aligned_cols=384 Identities=23% Similarity=0.296 Sum_probs=310.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHhhcccccCCCHHHHHHHHcCCC
Q 003801 104 GLIVGLIGFLNNLAVENIAGTKFVVTSNMMLANKFGMAFLSFSIPNLVLTLFASIVTATVAPVAAGSGIPEVKAYLNGVD 183 (794)
Q Consensus 104 Gv~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~p~a~GsGipev~~~lng~~ 183 (794)
|+++|+.+..|+..+++++++.+....+...+.....++++..+.+++.+++++++ +++.+ ..|+|+|||++++++.
T Consensus 1 G~~~gl~a~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ggl~~~l~-~~~~~-~~g~gi~~v~~~~~~~- 77 (388)
T cd01033 1 GVGAGLGGGLLTLLLHGVQHLAFGYSEGSFLTGVAAVSPIRRALSLTVGGLIAGLG-WYLLR-RKGKKLVSIKQAVRGK- 77 (388)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhCccccchhhhccCChHHHHHHHHHHHHHHHHH-HHHHh-ccCCCcccHHHHhcCC-
Confidence 68899999999999999999988653211111111112233344566677777655 44433 4699999999999973
Q ss_pred CCCcchhHHHHHHHHHHHhhhccccccCCchhHHHHHHHHHHHhhccCccccccchhhhcccCChhhhhhHHHHhhhhhh
Q 003801 184 APGILSFRTLVIKIIGSISAVSSSLLVGKAGPMVHTGACVASLLGQGGSKKYGLTWKWLRFFKNDRDRRDFVTCGSAAGI 263 (794)
Q Consensus 184 ~~~~~~~~tl~~K~~~~~~sv~sGlsvG~EGP~vhiGa~igs~l~~~~s~~~~l~~~~l~~f~~~~~~r~lv~~GaaAGv 263 (794)
+.+++++.+.|.+++++++++|+|+|||||++|+|+++|+++++ ++++ ++++||++++||+|||+
T Consensus 78 --~~~~~~~~~~k~~~~~l~ig~G~s~G~EGP~v~iGa~i~~~~~~----~~~~---------~~~~~r~li~~GaaAGl 142 (388)
T cd01033 78 --KRMPFWETIIHAVLQIVTVGLGAPLGREVAPREVGALLAQRFSD----WLGL---------TVADRRLLVACAAGAGL 142 (388)
T ss_pred --CCCCHHHHHHHHHHHHhhhhcCCCcCcccHHHHHHHHHHHHHHH----HhCC---------CHHHHHHHHHHHHHHHH
Confidence 45788999999999999999999999999999999999999987 3443 67899999999999999
Q ss_pred hhhhcccchhHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcCcccccCCCceeEEeeccCCcccccchHHH
Q 003801 264 AAAFRAPVGGLLFAIEEMASWWRSALLWRAFFTTAIVAILLRAFIDICKSGKCGLFGTGGLIMYDVYSADASYHLADVPL 343 (794)
Q Consensus 264 aaaF~APigGvLFalE~~~~~~~~~~~~~~f~~~~va~~v~~~l~~~~~~~~~~~fg~~~~~~f~v~~~~~~~~~~~l~~ 343 (794)
||+||||++|++|++|++.++|+.+.++++++++.+++++.+.+ ++..+ .|.++. .++++.++++
T Consensus 143 aa~F~aPlaG~lFalE~~~~~~~~~~~~~~~~as~~a~~v~~~~-----------~g~~~--~f~~~~--~~~~~~~l~~ 207 (388)
T cd01033 143 AAVYNVPLAGALFALEILLRTISLRSVVAALATSAIAAAVASLL-----------KGDHP--IYDIPP--MQLSTPLLIW 207 (388)
T ss_pred HHHhCCchHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHh-----------CCCCc--eeecCC--CCCCHHHHHH
Confidence 99999999999999999999999998899999888888887753 34444 455553 3345778999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHhchhhhccCCCCCCCCCCcCCCCCCCCc
Q 003801 344 VLLLGVVGGILGSLYNFLLDKVLRIYNFINEKGIAPKIFLACTISILTSCLLFGLPWLASCRPCPSDASEACPTIGRSGN 423 (794)
Q Consensus 344 ~illGv~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~c~~~~~~~~~~~p~~g~~g~ 423 (794)
++++|+++|++|.+|+++++++.+++++. .+.++.+.+.+++++++.++.|.+ .|
T Consensus 208 ~illGi~~Gl~~~lf~~~~~~~~~~~~~~-----~~~~~~~~l~gl~~g~~~~~~p~~----------------~G---- 262 (388)
T cd01033 208 ALLAGPVLGVVAAGFRRLSQAARAKRPKG-----KRILWQMPLAFLVIGLLSIFFPQI----------------LG---- 262 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccc-----cchHHHHHHHHHHHHHHHHHHHHH----------------hC----
Confidence 99999999999999999999988766421 122344667778888888888876 22
Q ss_pred ccccccCCCccchhhhhhcCCcHHHHHhhhccCCCCchhhHHHHHHHHHHHHHHHHhhcCCCCcccchHHHHHHHHHhHH
Q 003801 424 YKKFQCAPGYYNDLASLIFNTNDDAIRNLFSKDTDKEFQHSSMLIFFVTCFSLSVLSYGIVAPAGLFVPAIVTGASYGRF 503 (794)
Q Consensus 424 ~~~~~c~~g~y~~la~l~~~~~~~~i~~lf~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~Psl~iGa~~G~l 503 (794)
++++.++.++++ +++...++.++++|+++|++|+|+|.|||+|.|++++||++|++
T Consensus 263 --------------------~G~~~i~~~~~~----~~~~~~ll~~~~~K~~~t~lt~gsG~~GG~f~P~l~iGa~~G~~ 318 (388)
T cd01033 263 --------------------NGRALAQLAFST----TLTLSLLLILLVLKIVATLLALRAGAYGGLLTPSLALGALLGAL 318 (388)
T ss_pred --------------------CcHHHHHHHHcC----CchHHHHHHHHHHHHHHHHHHHccCCCccchHHHHHHHHHHHHH
Confidence 223445555543 34556677788999999999999999999999999999999999
Q ss_pred HHHHhccc-cCcchHHHHHHHHhhhhhhhcchhhHHHHHHHHHhC-CcchHHHHHHHHHHHHHHHhhh
Q 003801 504 VGMLVGSH-SNLNHGLYAVLGAASFLGGSMRMTVSLCVIILELTN-NLLLLPMIMLVLLISKTVADAF 569 (794)
Q Consensus 504 ~g~~~~~~-~~~~~~~~alvGaaa~l~g~~r~pls~~vi~~ElTg-~~~~l~pimia~~ia~~v~~~~ 569 (794)
+|++++.. ...++..|+++||||++++++|+|++++++++|+|| +++.++|+|+++++|+.+++.+
T Consensus 319 ~g~~~~~~~p~~~~~~~a~~GmaA~laa~~~aPlt~ivl~~Eltg~~~~~l~Pl~ia~~~a~~vs~~~ 386 (388)
T cd01033 319 LGIVWNALLPPLSIAAFALIGAAAFLAATQKAPLTALILVLEFTRQNPLFLIPLMLAVAGAVAVSRFI 386 (388)
T ss_pred HHHHHHHhCCcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 99998652 356789999999999999999999999999999999 9999999999999999999865
No 14
>PF00654 Voltage_CLC: Voltage gated chloride channel Mutation in several of these channels lead to human disease.; InterPro: IPR001807 Chloride channels (CLCs) constitute an evolutionarily well-conserved family of voltage-gated channels that are structurally unrelated to the other known voltage-gated channels. They are found in organisms ranging from bacteria to yeasts and plants, and also to animals. Their functions in higher animals likely include the regulation of cell volume, control of electrical excitability and trans-epithelial transport []. The first member of the family (CLC-0) was expression-cloned from the electric organ of Torpedo marmorata [], and subsequently nine CLC-like proteins have been cloned from mammals. They are thought to function as multimers of two or more identical or homologous subunits, and they have varying tissue distributions and functional properties. To date, CLC-0, CLC-1, CLC-2, CLC-4 and CLC-5 have been demonstrated to form functional Cl- channels; whether the remaining isoforms do so is either contested or unproven. One possible explanation for the difficulty in expressing activatable Cl- channels is that some of the isoforms may function as Cl- channels of intracellular compartments, rather than of the plasma membrane. However, they are all thought to have a similar transmembrane (TM) topology, initial hydropathy analysis suggesting 13 hydrophobic stretches long enough to form putative TM domains []. Recently, the postulated TM topology has been revised, and it now seems likely that the CLCs have 10 (or possibly 12) TM domains, with both N- and C-termini residing in the cytoplasm []. A number of human disease-causing mutations have been identified in the genes encoding CLCs. Mutations in CLCN1, the gene encoding CLC-1, the major skeletal muscle Cl- channel, lead to both recessively and dominantly-inherited forms of muscle stiffness or myotonia []. Similarly, mutations in CLCN5, which encodes CLC-5, a renal Cl- channel, lead to several forms of inherited kidney stone disease []. These mutations have been demonstrated to reduce or abolish CLC function.; GO: 0005247 voltage-gated chloride channel activity, 0006821 chloride transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2FEC_B 1KPK_F 2EZ0_A 1OTS_A 1OTT_B 2H2S_A 2FED_B 2HTL_A 2HTK_B 3NMO_A ....
Probab=100.00 E-value=3.4e-57 Score=499.43 Aligned_cols=345 Identities=35% Similarity=0.605 Sum_probs=281.5
Q ss_pred HHHHHHHHHHhhcccccCCCHHHHHHHHcCCCCCCcchhHHHHHHHHHHHhhhccccccCCchhHHHHHHHHHHHhhccC
Q 003801 152 LTLFASIVTATVAPVAAGSGIPEVKAYLNGVDAPGILSFRTLVIKIIGSISAVSSSLLVGKAGPMVHTGACVASLLGQGG 231 (794)
Q Consensus 152 ~~~~a~~l~~~~~p~a~GsGipev~~~lng~~~~~~~~~~tl~~K~~~~~~sv~sGlsvG~EGP~vhiGa~igs~l~~~~ 231 (794)
+++++++++.++.|.++|+||||+++.+++.+. .+++|+.+.|++++++++++|+|+|||||++|+|+++|++++|
T Consensus 2 ~~~~~~~l~~~~~p~~~g~Gi~~v~~~~~~~~~--~~~~~~~~~k~~~~~~s~~~G~s~G~EGp~v~iga~i~~~~~~-- 77 (355)
T PF00654_consen 2 GGLLSGLLWKKFAPEAAGSGIPEVKAALRGKSG--RLPFRTLPVKFVGSILSLGSGLSVGREGPSVQIGAAIGSWLGR-- 77 (355)
T ss_dssp HHHHHHHHHHHC-GGGSB-SHHHHHHHCTTSS-----HHHHHHHHHHHHHHHHHTT-S-BSHHHHHHHHHHHHHHHHH--
T ss_pred EEEEeeHHHHHHCCccCCCCHHHHHHHHhCCCC--CCCHHHHHHHHHHHHHHHhcCCCCcCccHHHHHHHHHHHHHHH--
Confidence 567788999999999999999999999998643 4999999999999999999999999999999999999999987
Q ss_pred ccccccchhhhcccCChhh-hhhHHHHhhhhhhhhhhcccchhHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 003801 232 SKKYGLTWKWLRFFKNDRD-RRDFVTCGSAAGIAAAFRAPVGGLLFAIEEMASWWRSALLWRAFFTTAIVAILLRAFIDI 310 (794)
Q Consensus 232 s~~~~l~~~~l~~f~~~~~-~r~lv~~GaaAGvaaaF~APigGvLFalE~~~~~~~~~~~~~~f~~~~va~~v~~~l~~~ 310 (794)
++++ ++++ +|.+++||+|||+||+||||++|++|++|++.++++.+.+|++++++.+++++.+.+.+
T Consensus 78 --~~~~---------~~~~~~r~l~~~g~aAglaa~F~aPlaG~lFalE~~~~~~~~~~~~~~~~as~~a~~v~~~~~~- 145 (355)
T PF00654_consen 78 --RFRL---------SRNETRRLLLAAGAAAGLAAAFNAPLAGVLFALEELSRDFSVRLLLPALVASIVATLVSRLLFG- 145 (355)
T ss_dssp --HTT-----------CHHHHHHHHHHHHHHHHHHHHT-HHHHHHHHHCCTCHCCSTTTHHHHHHHHHHHHHHHHHHHT-
T ss_pred --hhcc---------cchHHHhHHHHHHHHHHHHHHhcCCcccceehhheeeccccchhhHHHHHHHHHHHHHHHHHcC-
Confidence 3332 3444 77799999999999999999999999999999999999999999999999999987532
Q ss_pred hhcCcccccCCCceeEEe-eccCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHH
Q 003801 311 CKSGKCGLFGTGGLIMYD-VYSADASYHLADVPLVLLLGVVGGILGSLYNFLLDKVLRIYNFINEKGIAPKIFLACTISI 389 (794)
Q Consensus 311 ~~~~~~~~fg~~~~~~f~-v~~~~~~~~~~~l~~~illGv~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (794)
..+ .|+ ++. ..++++.++++++++|++||++|.+|+++++++.+++++++ +.+.++++++.+.++
T Consensus 146 ----------~~~--~f~~~~~-~~~~~~~~~~~~~llGi~~Gl~g~~f~~~~~~~~~~~~~~~-~~~~~~~l~~~i~gl 211 (355)
T PF00654_consen 146 ----------NHP--IFGSVPQ-LFPFSLWELPLFLLLGIICGLLGALFNRLLRWLRKFFRKLK-RLKIPPILRPVIGGL 211 (355)
T ss_dssp ----------SS---SS---TT------GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHH
T ss_pred ----------cCc--ccccccc-cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccccchHHHHHHHHH
Confidence 222 244 442 34789999999999999999999999999999999998875 334445678999999
Q ss_pred HHHHHHhchhh--hccCCCCCCCCCCcCCCCCCCCcccccccCCCccchhhhhhcCCcHHHHHhhhccCCCCchhhHHHH
Q 003801 390 LTSCLLFGLPW--LASCRPCPSDASEACPTIGRSGNYKKFQCAPGYYNDLASLIFNTNDDAIRNLFSKDTDKEFQHSSML 467 (794)
Q Consensus 390 ~~~~~~~~~p~--~~~c~~~~~~~~~~~p~~g~~g~~~~~~c~~g~y~~la~l~~~~~~~~i~~lf~~~~~~~~~~~~l~ 467 (794)
+++++.++.|+ + . +++++.++.+++++ ...+.+..++
T Consensus 212 ~~g~l~~~~p~~~~----------------~------------------------g~G~~~i~~ll~~~-~~~~~~~~l~ 250 (355)
T PF00654_consen 212 VIGLLAFFFPEGSV----------------L------------------------GSGYELIQSLLSGS-PPWFSLGSLL 250 (355)
T ss_dssp HHHHHHHSSGG-SG----------------S------------------------SSSTTHHHHHCTT-----S-HHHHH
T ss_pred HHHHHHHHHhhhcc----------------c------------------------CCcHHHHHHHHcCC-cchhhHHHHH
Confidence 99999999886 4 1 22334566666532 2247788899
Q ss_pred HHHHHHHHHHHHhhcCCCCcccchHHHHHHHHHhHHHHHHhcccc----CcchHHHHHHHHhhhhhhhcchhhHHHHHHH
Q 003801 468 IFFVTCFSLSVLSYGIVAPAGLFVPAIVTGASYGRFVGMLVGSHS----NLNHGLYAVLGAASFLGGSMRMTVSLCVIIL 543 (794)
Q Consensus 468 ~~~~~k~~~t~~t~g~g~~gG~f~Psl~iGa~~G~l~g~~~~~~~----~~~~~~~alvGaaa~l~g~~r~pls~~vi~~ 543 (794)
+++++|++++++|+++|+|||+|+|++++||++|+++|.+++... ..+|+.|+++||+|++++++|+|+++++|++
T Consensus 251 ~~~~~K~~~t~lt~~~G~~GG~f~Psl~iGa~~G~~~~~~~~~~~~~~~~~~~~~~al~G~~a~~~a~~~~Plt~~vl~~ 330 (355)
T PF00654_consen 251 LLFLLKFLATALTLGSGAPGGIFFPSLFIGAALGRLFGALLGSFFPGISSVDPGVYALVGMAAFLAAVTRAPLTAIVLVL 330 (355)
T ss_dssp HHHHHHHHHHHHHHHTT-BSBSHHHHHHHHHHHHHHHHHHHHHH-GGG-T-SHHHHHHHHTTHHHHHHCS-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCccCCCCEEccHHHHHHHHHHHHHHHHHhhCCCcCCCchHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 999999999999999999999999999999999999999987641 2379999999999999999999999999999
Q ss_pred HHhCCcchHHHHHHHHHHHHHHHh
Q 003801 544 ELTNNLLLLPMIMLVLLISKTVAD 567 (794)
Q Consensus 544 ElTg~~~~l~pimia~~ia~~v~~ 567 (794)
|+|||+++++|+|+++++|+.+++
T Consensus 331 Eltg~~~~~~p~lia~~~a~~v~~ 354 (355)
T PF00654_consen 331 ELTGDFQLLLPLLIAVAVAYLVAR 354 (355)
T ss_dssp HHH--GGGHHHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999987
No 15
>COG0038 EriC Chloride channel protein EriC [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.9e-55 Score=491.99 Aligned_cols=410 Identities=30% Similarity=0.480 Sum_probs=325.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhhcchhhHHHHHHHHHHHHHHHH-HHHHhhcccccCCCHHH
Q 003801 96 KWSLCFLIGLIVGLIGFLNNLAVENIAGTKFVVTSNMMLANKFGMAFLSFSIPNLVLTLFAS-IVTATVAPVAAGSGIPE 174 (794)
Q Consensus 96 ~w~~~~liGv~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~-~l~~~~~p~a~GsGipe 174 (794)
.+..+.++|+++|+.....+....+.......... ..+....| +.++.+..++++++ +++.++.|+++|+|+|+
T Consensus 22 ~i~~~~~lgvi~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-~~~l~~~~~gl~~g~~~~~~~~p~~~g~Gi~~ 96 (443)
T COG0038 22 LIGIAAALGVIVGLFAVALDLALLLLGRLRGGLLS----AAQAPGPW-LLPLVPALGGLLVGALLVYKFAPEARGSGIPQ 96 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccccccc----ccccchhH-HHHHHHHHHHHHHHHHHHHHhCccccCCChhH
Confidence 34477777777777777777766666554432211 11111122 33344555666666 78889999999999999
Q ss_pred HHHHHcCCCCCCcchhHHHHHHHHHHHhhhccccccCCchhHHHHHHHHHHHhhccCccccccchhhhcccCChhhhhhH
Q 003801 175 VKAYLNGVDAPGILSFRTLVIKIIGSISAVSSSLLVGKAGPMVHTGACVASLLGQGGSKKYGLTWKWLRFFKNDRDRRDF 254 (794)
Q Consensus 175 v~~~lng~~~~~~~~~~tl~~K~~~~~~sv~sGlsvG~EGP~vhiGa~igs~l~~~~s~~~~l~~~~l~~f~~~~~~r~l 254 (794)
+++.+++. ++.+++|+.++|+++++++++||+|+|||||+||+|+++|+.+++ ++++ +++|||.+
T Consensus 97 ~i~a~~~~--~~~~~~~~~~vk~~~~~l~i~sG~s~GrEGP~vqiga~~g~~~~~----~l~~---------~~~~~r~L 161 (443)
T COG0038 97 AIEALHGR--KGRISPRVLPVKLVATLLTIGSGASLGREGPSVQIGAAIGSLLGR----LLKL---------SREDRRIL 161 (443)
T ss_pred HHHHHhcC--CCcccHHHHHHHHHHHHHHHhcCcccccccHHHHHHHHHHHHHHH----HhCC---------CHHHHHHH
Confidence 99999875 567899999999999999999999999999999999999999997 3333 57899999
Q ss_pred HHHhhhhhhhhhhcccchhHHHHHHHHhhh-hhhhHHHHHHHHHHHHHHHHHHHHHHhhcCcccccCCCceeEEeeccCC
Q 003801 255 VTCGSAAGIAAAFRAPVGGLLFAIEEMASW-WRSALLWRAFFTTAIVAILLRAFIDICKSGKCGLFGTGGLIMYDVYSAD 333 (794)
Q Consensus 255 v~~GaaAGvaaaF~APigGvLFalE~~~~~-~~~~~~~~~f~~~~va~~v~~~l~~~~~~~~~~~fg~~~~~~f~v~~~~ 333 (794)
++||+|||+||+|||||+|++|++||+... |+.+.++++++++.++..+.+.+ ++.+ ..+.+.. .
T Consensus 162 l~~GaAaGlaaaF~aPlagvlF~~E~l~~~~~~~~~l~p~~vaa~va~~v~~~~-----------~~~~--~~~~~~~-~ 227 (443)
T COG0038 162 LAAGAAAGLAAAFNAPLAGALFAIEVLYGRFLEYRALVPVLVAAVVALLVAGLF-----------GGPH--FLLPIVT-T 227 (443)
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHc-----------CCCC--ceeeccc-c
Confidence 999999999999999999999999999987 88888888888777777766643 2222 2344443 4
Q ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHhchhhhccCCCCCCCCCC
Q 003801 334 ASYHLADVPLVLLLGVVGGILGSLYNFLLDKVLRIYNFINEKGIAPKIFLACTISILTSCLLFGLPWLASCRPCPSDASE 413 (794)
Q Consensus 334 ~~~~~~~l~~~illGv~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~c~~~~~~~~~ 413 (794)
..++.++++.++++|+++|++|.+|.+...+.++++++. +..+.+.+.+++++++.+.++.|..
T Consensus 228 ~~~~~~~~~~~~~lGii~G~~g~~~~~~~~~~~~~~~~~----~~~~~~~~~~~g~l~g~~~l~~P~~------------ 291 (443)
T COG0038 228 PHMSLWDLLLYLVLGIIAGLFGVLLSRLLALSRRFFRRL----PLPPLLRPALGGLLVGALGLLFPEV------------ 291 (443)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----cchHHHHHHHHHHHHHHHHHhchhh------------
Confidence 567889999999999999999999999987764444432 3346677888889999999998877
Q ss_pred cCCCCCCCCcccccccCCCccchhhhhhcCCcHHHHHhhhccCCCCchhhHHHHHHHHHHHHHHHHhhcCCCCcccchHH
Q 003801 414 ACPTIGRSGNYKKFQCAPGYYNDLASLIFNTNDDAIRNLFSKDTDKEFQHSSMLIFFVTCFSLSVLSYGIVAPAGLFVPA 493 (794)
Q Consensus 414 ~~p~~g~~g~~~~~~c~~g~y~~la~l~~~~~~~~i~~lf~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~Ps 493 (794)
.|. | |+ .++..++ .++.+..++.++++|+++|++|+|+|+|||+|+|+
T Consensus 292 ----lg~-G-----------~~------------~~~~~~~----~~~~~~~l~~l~~~K~l~t~~s~gSG~~GGif~Ps 339 (443)
T COG0038 292 ----LGN-G-----------YG------------LIQLALA----GEGGLLVLLLLFLLKLLATLLSYGSGAPGGIFAPS 339 (443)
T ss_pred ----hCC-C-----------cc------------HHHHHHc----cCccHHHHHHHHHHHHHHHHHHHhcCCCcceehHH
Confidence 221 1 11 1222222 22333336778899999999999999999999999
Q ss_pred HHHHHHHhHHHHHHhcccc---CcchHHHHHHHHhhhhhhhcchhhHHHHHHHHHhCCcchHHHHHHHHHHHHHHHhhh-
Q 003801 494 IVTGASYGRFVGMLVGSHS---NLNHGLYAVLGAASFLGGSMRMTVSLCVIILELTNNLLLLPMIMLVLLISKTVADAF- 569 (794)
Q Consensus 494 l~iGa~~G~l~g~~~~~~~---~~~~~~~alvGaaa~l~g~~r~pls~~vi~~ElTg~~~~l~pimia~~ia~~v~~~~- 569 (794)
+++||++|.++|.+++... ...+..|+++||++++++++|+|++++++++||||+++.++|+|+++++|+.+++..
T Consensus 340 l~iGa~lG~~~g~~~~~~~~~~~~~~~~~al~Gm~a~la~~~~aPlta~vlv~EmTg~~~~~l~ll~a~~ia~~~~~~~~ 419 (443)
T COG0038 340 LFIGAALGLAFGALLGLLFPPSILEPGLFALLGMAAFLAATTRAPLTAIVLVLEMTGNYQLLLPLLIACLIAYLVSRLLG 419 (443)
T ss_pred HHHHHHHHHHHHHHHHhhcCccccchHHHHHHHHHHHHHHHhcccHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999887632 345779999999999999999999999999999999999999999999999999987
Q ss_pred cchHHHHHHHHcCCCccc
Q 003801 570 NGNIYDLIMKAKGFPYLE 587 (794)
Q Consensus 570 ~~~iy~~~l~~~g~p~l~ 587 (794)
+.++|+..+++++.+..+
T Consensus 420 ~~~~~~~~~~~~~~~~~~ 437 (443)
T COG0038 420 GRPIYTQLLARRGAPILR 437 (443)
T ss_pred CCcHHHHHHHhcCchhhh
Confidence 889999999999887443
No 16
>cd00400 Voltage_gated_ClC CLC voltage-gated chloride channel. The ClC chloride channels catalyse the selective flow of Cl- ions across cell membranes, thereby regulating electrical excitation in skeletal muscle and the flow of salt and water across epithelial barriers. This domain is found in the halogen ions (Cl-, Br- and I-) transport proteins of the ClC family. The ClC channels are found in all three kingdoms of life and perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, transepithelial transport in animals, and the extreme acid resistance response in eubacteria. They lack any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. Unlike cation-selective ion channels, which form oligomers containing a single pore along the axis of symmetry, the ClC channels form two-pore
Probab=100.00 E-value=1.5e-52 Score=468.20 Aligned_cols=380 Identities=30% Similarity=0.471 Sum_probs=314.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHhhcccccCCCHHHHHHHHcCCC
Q 003801 104 GLIVGLIGFLNNLAVENIAGTKFVVTSNMMLANKFGMAFLSFSIPNLVLTLFASIVTATVAPVAAGSGIPEVKAYLNGVD 183 (794)
Q Consensus 104 Gv~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~p~a~GsGipev~~~lng~~ 183 (794)
|+++|+++.+|+..++++++++++...+.. .....+++++...+++++++++++..+..| ..|+|+|++++.+++.
T Consensus 1 Gi~~Gl~~~lf~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~v~l~~~~~~~-~~g~G~~~v~~~~~~~- 76 (383)
T cd00400 1 GVLSGLGAVLFRLLIELLQNLLFGGLPGEL--AAGSLSPLYILLVPVIGGLLVGLLVRLLGP-ARGHGIPEVIEAIALG- 76 (383)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhcccccc--ccccccHHHHHHHHHHHHHHHHHHHHHhCc-ccCCChHHHHHHHHhC-
Confidence 688999999999999999998876543211 011223455566677777887777766666 8999999999998863
Q ss_pred CCCcchhHHHHHHHHHHHhhhccccccCCchhHHHHHHHHHHHhhccCccccccchhhhcccCChhhhhhHHHHhhhhhh
Q 003801 184 APGILSFRTLVIKIIGSISAVSSSLLVGKAGPMVHTGACVASLLGQGGSKKYGLTWKWLRFFKNDRDRRDFVTCGSAAGI 263 (794)
Q Consensus 184 ~~~~~~~~tl~~K~~~~~~sv~sGlsvG~EGP~vhiGa~igs~l~~~~s~~~~l~~~~l~~f~~~~~~r~lv~~GaaAGv 263 (794)
++.+++++++.|++++++++++|+|+|||||++|+|+++|+++++ ++++ ++.++|.+++||+|||+
T Consensus 77 -~~~~~~~~~~~k~l~~~l~~~~G~s~G~egP~v~iGa~~g~~~~~----~~~~---------~~~~~~~l~~~G~aagl 142 (383)
T cd00400 77 -GGRLPLRVALVKFLASALTLGSGGSVGREGPIVQIGAAIGSWLGR----RLRL---------SRNDRRILVACGAAAGI 142 (383)
T ss_pred -CCCCCHHHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHH----HhCC---------CHHHHHHHHHHHHHHHH
Confidence 345789999999999999999999999999999999999999987 3332 67789999999999999
Q ss_pred hhhhcccchhHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcCcccccCCCceeEEeeccCCcccccchHHH
Q 003801 264 AAAFRAPVGGLLFAIEEMASWWRSALLWRAFFTTAIVAILLRAFIDICKSGKCGLFGTGGLIMYDVYSADASYHLADVPL 343 (794)
Q Consensus 264 aaaF~APigGvLFalE~~~~~~~~~~~~~~f~~~~va~~v~~~l~~~~~~~~~~~fg~~~~~~f~v~~~~~~~~~~~l~~ 343 (794)
+|+||||++|++|++|++.++++.+.+++.++++.++..+.+.+. +..+ .|+++. ..++++.++++
T Consensus 143 aa~f~aPl~g~lf~~E~~~~~~~~~~~~~~~~~~~~a~~v~~~~~-----------~~~~--~~~~~~-~~~~~~~~~~~ 208 (383)
T cd00400 143 AAAFNAPLAGALFAIEVLLGEYSVASLIPVLLASVAAALVSRLLF-----------GAEP--AFGVPL-YDPLSLLELPL 208 (383)
T ss_pred HHhcCChhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHc-----------CCCC--eeeCCC-CCcCCHHHHHH
Confidence 999999999999999999999988888999988888888887542 2222 355553 46788999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHhchhhhccCCCCCCCCCCcCCCCCCCCc
Q 003801 344 VLLLGVVGGILGSLYNFLLDKVLRIYNFINEKGIAPKIFLACTISILTSCLLFGLPWLASCRPCPSDASEACPTIGRSGN 423 (794)
Q Consensus 344 ~illGv~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~c~~~~~~~~~~~p~~g~~g~ 423 (794)
++++|+++|++|.+|++++.++.+++++. +.++.+.+.+.+++++++.++.|+. .|.
T Consensus 209 ~il~Gv~~g~~g~~f~~~~~~~~~~~~~~----~~~~~~~~~i~gll~~~~~~~~p~~----------------~g~--- 265 (383)
T cd00400 209 YLLLGLLAGLVGVLFVRLLYKIERLFRRL----PIPPWLRPALGGLLLGLLGLFLPQV----------------LGS--- 265 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc----CCcHHHHHHHHHHHHHHHHHHHHHH----------------HcC---
Confidence 99999999999999999999998887654 2345677788888999998888887 221
Q ss_pred ccccccCCCccchhhhhhcCCcHHHHHhhhccCCCCchhhHHHHHHHHHHHHHHHHhhcCCCCcccchHHHHHHHHHhHH
Q 003801 424 YKKFQCAPGYYNDLASLIFNTNDDAIRNLFSKDTDKEFQHSSMLIFFVTCFSLSVLSYGIVAPAGLFVPAIVTGASYGRF 503 (794)
Q Consensus 424 ~~~~~c~~g~y~~la~l~~~~~~~~i~~lf~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~Psl~iGa~~G~l 503 (794)
+++.++..++ ++++...++.+++.|++++++|+|+|+|||.|.|++++||++|++
T Consensus 266 ---------------------G~~~~~~~~~----~~~~~~~l~~~~~~K~~~t~l~~~sG~~GG~~~P~l~iGa~~G~~ 320 (383)
T cd00400 266 ---------------------GYGAILLALA----GELSLLLLLLLLLLKLLATALTLGSGFPGGVFAPSLFIGAALGAA 320 (383)
T ss_pred ---------------------cHHHHHHHHc----CChhHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHH
Confidence 1122333332 345566777888999999999999999999999999999999999
Q ss_pred HHHHhccc---cCcchHHHHHHHHhhhhhhhcchhhHHHHHHHHHhCCcchHHHHHHHHHHHH
Q 003801 504 VGMLVGSH---SNLNHGLYAVLGAASFLGGSMRMTVSLCVIILELTNNLLLLPMIMLVLLISK 563 (794)
Q Consensus 504 ~g~~~~~~---~~~~~~~~alvGaaa~l~g~~r~pls~~vi~~ElTg~~~~l~pimia~~ia~ 563 (794)
+|++++.. ...+|..|+++||+|++++++|+|++++++++|+||++++++|+|+++++||
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~G~aa~la~~~~aPlt~~vl~~Eltg~~~~l~p~~ia~~ia~ 383 (383)
T cd00400 321 FGLLLPALFPGLVASPGAYALVGMAALLAAVLRAPLTAILLVLELTGDYSLLLPLMLAVVIAY 383 (383)
T ss_pred HHHHHHHhCCcccCChHHHHHHHHHHHHHHHhCchHHHHHHHHHHhCChhhHHHHHHHHHhcC
Confidence 99998752 3568999999999999999999999999999999999999999999998875
No 17
>cd03682 ClC_sycA_like ClC sycA-like chloride channel proteins. This ClC family presents in bacteria, where it facilitates acid resistance in acidic soil. Mutation of this gene (sycA) in Rhizobium tropici CIAT899 causes serious deficiencies in nodule development, nodulation competitiveness, and N2 fixation on Phaseolus vulgaris plants, due to its reduced ability for acid resistance. This family is part of the ClC chloride channel superfamiy. These proteins catalyse the selective flow of Cl- ions across cell membranes and Cl-/H+ exchange transport. These proteins share two characteristics that are apparently inherent to the entire ClC chloride channel superfamily: a unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=100.00 E-value=1.1e-49 Score=442.62 Aligned_cols=375 Identities=20% Similarity=0.290 Sum_probs=293.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHhhcccccCCCHHHHHHHH
Q 003801 100 CFLIGLIVGLIGFLNNLAVENIAGTKFVVTSNMMLANKFGMAFLSFSIPNLVLTLFASIVTATVAPVAAGSGIPEVKAYL 179 (794)
Q Consensus 100 ~~liGv~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~p~a~GsGipev~~~l 179 (794)
++++|+++|+++.+|+..+++++++++.. +|+. ..+++ .+++.+++..++.|. .|+|++|+++.+
T Consensus 2 a~~iGii~G~~~~~f~~~i~~~~~~~~~~------------~~~~-~~~p~-~g~~i~~l~~~~~~~-~~~g~~~v~~~~ 66 (378)
T cd03682 2 ALLIGLLVGSASALFLWSLDWATEFREAH------------PWLL-PFLPL-AGLLIGYLYQKFGKN-SEKGNNLIIEEI 66 (378)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHh------------hHHH-HHHHH-HHHHHHHHHHHhCcc-cCCChHHHHHHH
Confidence 67899999999999999999998875421 2222 22343 445556777777665 568999998888
Q ss_pred cCCCCCCcchhHHHHHHHHHHHhhhccccccCCchhHHHHHHHHHHHhhccCccccccchhhhcccCChhhhhhHHHHhh
Q 003801 180 NGVDAPGILSFRTLVIKIIGSISAVSSSLLVGKAGPMVHTGACVASLLGQGGSKKYGLTWKWLRFFKNDRDRRDFVTCGS 259 (794)
Q Consensus 180 ng~~~~~~~~~~tl~~K~~~~~~sv~sGlsvG~EGP~vhiGa~igs~l~~~~s~~~~l~~~~l~~f~~~~~~r~lv~~Ga 259 (794)
++. .+.+++|..+.|++++.+++++|+|+|||||++|+|+++|+++++ ++++ +++++|++++||+
T Consensus 67 ~~~--~~~~~~~~~~~k~~~~~l~l~~G~s~G~Egp~v~~ga~~~~~~~~----~~~~---------~~~~~r~l~~~g~ 131 (378)
T cd03682 67 HGP--EEGIPLRMAPLVLFGTVLTHLFGGSAGREGTAVQMGGSLADAFGR----VFKL---------PEEDRRILLIAGI 131 (378)
T ss_pred Hcc--CCCCchHHHHHHHHHHHHHHHcCCccCCcchHHHHHHHHHHHHHH----HhCC---------CHHHHHHHHHHHH
Confidence 753 356788999999999999999999999999999999999999997 3332 5678899999999
Q ss_pred hhhhhhhhcccchhHHHHHHHHh-hhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcCcccccCCCceeEEeeccCCccccc
Q 003801 260 AAGIAAAFRAPVGGLLFAIEEMA-SWWRSALLWRAFFTTAIVAILLRAFIDICKSGKCGLFGTGGLIMYDVYSADASYHL 338 (794)
Q Consensus 260 aAGvaaaF~APigGvLFalE~~~-~~~~~~~~~~~f~~~~va~~v~~~l~~~~~~~~~~~fg~~~~~~f~v~~~~~~~~~ 338 (794)
|||++|+||||++|++|++|++. +.++.+.+++.++++.++..+.+.+ +.++ ..|.++. ..++++
T Consensus 132 aAglaa~f~aPl~g~~f~~E~~~~~~~~~~~~~~~~i~~~~a~~v~~~~------------~~~~-~~~~~~~-~~~~~~ 197 (378)
T cd03682 132 AAGFAAVFGTPLAGAIFALEVLVLGRLRYSALIPCLVAAIVADWVSHAL------------GLEH-THYHIVF-IPTLDP 197 (378)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHh------------CCCC-CccccCC-CCCCCH
Confidence 99999999999999999999996 5566666777777777776665532 1111 1244432 356788
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHhchhhhccCCCCCCCCCCcCCCC
Q 003801 339 ADVPLVLLLGVVGGILGSLYNFLLDKVLRIYNFINEKGIAPKIFLACTISILTSCLLFGLPWLASCRPCPSDASEACPTI 418 (794)
Q Consensus 339 ~~l~~~illGv~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~c~~~~~~~~~~~p~~ 418 (794)
.++++++++|+++|++|.+|+++.+++.+++++.. ..+++.+.+.+++++++.++.+.- . . .
T Consensus 198 ~~l~~~i~~Gi~~gl~g~~f~~~~~~~~~~~~~~~----~~~~~~~~iggl~~g~~~~~~~~~-------~-----~--~ 259 (378)
T cd03682 198 LLFVKVILAGIIFGLAGRLFAELLHFLKKLLKKRI----KNPYLRPFVGGLLIILLVYLLGSR-------R-----Y--L 259 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----CCcHHHHHHHHHHHHHHHHHhcCC-------c-----c--c
Confidence 99999999999999999999999999988876542 224456677777877776654321 0 0 1
Q ss_pred CCCCcccccccCCCccchhhhhhcCCcHHHHHh-hhccCCCCchhhHHHHHHHHHHHHHHHHhhcCCCCcccchHHHHHH
Q 003801 419 GRSGNYKKFQCAPGYYNDLASLIFNTNDDAIRN-LFSKDTDKEFQHSSMLIFFVTCFSLSVLSYGIVAPAGLFVPAIVTG 497 (794)
Q Consensus 419 g~~g~~~~~~c~~g~y~~la~l~~~~~~~~i~~-lf~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~Psl~iG 497 (794)
| .+++.++. +++. +.. ...+++|+++|++|+|+|+|||+|.|++++|
T Consensus 260 G------------------------~g~~~i~~~~~~~----~~~----~~~~l~K~~~t~~s~g~G~~GG~f~P~l~iG 307 (378)
T cd03682 260 G------------------------LGTPLIEDSFFGG----TVY----PYDWLLKLIFTVITLGAGFKGGEVTPLFFIG 307 (378)
T ss_pred c------------------------CCHHHHHHHHhcC----Cch----HHHHHHHHHHHHHHHhcCCCCceechHHHHH
Confidence 1 11222333 3321 121 1235799999999999999999999999999
Q ss_pred HHHhHHHHHHhccccCcchHHHHHHHHhhhhhhhcchhhHHHHHHHHHhCCcchHHHHHHHHHHHHHHHhhhcchHHH
Q 003801 498 ASYGRFVGMLVGSHSNLNHGLYAVLGAASFLGGSMRMTVSLCVIILELTNNLLLLPMIMLVLLISKTVADAFNGNIYD 575 (794)
Q Consensus 498 a~~G~l~g~~~~~~~~~~~~~~alvGaaa~l~g~~r~pls~~vi~~ElTg~~~~l~pimia~~ia~~v~~~~~~~iy~ 575 (794)
|++|+++|+++ ..++..|+++||+|++++++|+|++++++++|+|| .+.++|+|+++++|+.+++ ++++|+
T Consensus 308 a~~G~~~~~~~----~~~~~~~~~~Gmaa~laa~~raPlt~ivl~~Eltg-~~~~~p~~ia~~ia~~~~~--~~~iy~ 378 (378)
T cd03682 308 ATLGNALAPIL----GLPVSLLAALGFVAVFAGATNTPLACIIMGIELFG-AENAPYFFIACLVAYLFSG--HTGIYG 378 (378)
T ss_pred HHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhC-ccchHHHHHHHHHHHHHhC--CCCCCC
Confidence 99999999998 46788999999999999999999999999999999 5778899999999999997 778884
No 18
>PRK03655 putative ion channel protein; Provisional
Probab=100.00 E-value=1.7e-47 Score=426.34 Aligned_cols=383 Identities=13% Similarity=0.159 Sum_probs=286.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHhhcccccCCCHH
Q 003801 94 FMKWSLCFLIGLIVGLIGFLNNLAVENIAGTKFVVTSNMMLANKFGMAFLSFSIPNLVLTLFASIVTATVAPVAAGSGIP 173 (794)
Q Consensus 94 ~~~w~~~~liGv~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~p~a~GsGip 173 (794)
...++.++++|+++|+++.+|+..+++++++.|....+....... .+| +.+.++.+.++++++++++ .|...|+ .|
T Consensus 10 ~~l~~~ailvG~~aGl~a~lf~~li~~~~~l~~~~~~~~~~~~~~-~~~-~~~~~~~~gGllvgll~~~-~~~~~G~-~~ 85 (414)
T PRK03655 10 LLLSLPALAIGIASSLILIVVMKIASVLQNLLWQRLPGTLGIAQD-SPL-WIIGMLTLTGIAVGLVIRF-SPGHAGP-DP 85 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccc-cch-HHHHHHHHHHHHHHHHHHH-cCCCCCC-hH
Confidence 445679999999999999999999999999988754322111111 122 2334567778888887755 5766566 57
Q ss_pred HHHHHHcCCCCCCcchhHHHHHHHHHHHhhhccccccCCchhHHHHHHHHHHHhhccCccccccchhhhcccCChhhhhh
Q 003801 174 EVKAYLNGVDAPGILSFRTLVIKIIGSISAVSSSLLVGKAGPMVHTGACVASLLGQGGSKKYGLTWKWLRFFKNDRDRRD 253 (794)
Q Consensus 174 ev~~~lng~~~~~~~~~~tl~~K~~~~~~sv~sGlsvG~EGP~vhiGa~igs~l~~~~s~~~~l~~~~l~~f~~~~~~r~ 253 (794)
+++...++ .++.+.+..|++++++++++|+|+|||||+||+||+++++++| +++ +..++|+
T Consensus 86 ~~~~~~~~-----~~~~~~~~~~~~~~~l~l~~G~S~GrEGP~VqiGa~igs~~~r-----------~~~---~~~~~~~ 146 (414)
T PRK03655 86 ATEPLIGA-----PVPPSALPGLLLALILGLAGGVSLGPEHPIMTVNIALAVAIGA-----------RLL---PRVNRMD 146 (414)
T ss_pred HHHHHhcC-----CCCccHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHH-----------Hhc---cCCChhH
Confidence 77666433 3567889999999999999999999999999999999999997 221 2356788
Q ss_pred HHHHhhhhhhhhhhcccchhHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcCcccccCCCceeEEeeccCC
Q 003801 254 FVTCGSAAGIAAAFRAPVGGLLFAIEEMASWWRSALLWRAFFTTAIVAILLRAFIDICKSGKCGLFGTGGLIMYDVYSAD 333 (794)
Q Consensus 254 lv~~GaaAGvaaaF~APigGvLFalE~~~~~~~~~~~~~~f~~~~va~~v~~~l~~~~~~~~~~~fg~~~~~~f~v~~~~ 333 (794)
++.||+|||+||+||||++|++|++||+.+.+.... |...+.+.+++++....... .+ ++.+.++++. .
T Consensus 147 l~~~gaAaGiaAaFnaPLaG~lFa~E~l~~~~~~~~-~~~~~~~v~aa~~a~~v~~~-------~~--~~~~~~~~~~-~ 215 (414)
T PRK03655 147 WTILASAGTIGALFGTPVAAALIFSQTLNGSNEVPL-WDRLFAPLMAAAAGALTTGL-------FF--HPHFSLPIAH-Y 215 (414)
T ss_pred HHHHHHHHHHHHHhCchHHHHHHHHHHHHHhhhHHH-HHHHHHHHHHHHHHHHHHHH-------hC--CCCcceecCC-C
Confidence 999999999999999999999999999988766532 33334444444433222221 11 1222334442 3
Q ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHhch-hhhccCCCCCCCCC
Q 003801 334 ASYHLADVPLVLLLGVVGGILGSLYNFLLDKVLRIYNFINEKGIAPKIFLACTISILTSCLLFGL-PWLASCRPCPSDAS 412 (794)
Q Consensus 334 ~~~~~~~l~~~illGv~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~c~~~~~~~~ 412 (794)
...+..++++++++|++||++|.+|++...++.+++++++ . +.+...+++++++++.++. |..
T Consensus 216 ~~~~~~~~~~~l~lgi~~gl~G~lf~~~~~~~~~~~~~~~--~---p~~~~~lgGl~vg~l~l~~~~~~----------- 279 (414)
T PRK03655 216 GQMEMTDILSGAIVAAIAIAAGMVAVWCLPRLHALMHRLK--N---PVLVLGIGGFILGILGVIGGPLT----------- 279 (414)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--c---chHHHHHHHHHHHHHHHHhCCcc-----------
Confidence 4466788999999999999999999999988887776542 1 2234566777777777643 221
Q ss_pred CcCCCCCCCCcccccccCCCccchhhhhhcCCcHHHHHhhhccCCCCchhhHHHHHHHHHHHHHHHHhhcCCCCcccchH
Q 003801 413 EACPTIGRSGNYKKFQCAPGYYNDLASLIFNTNDDAIRNLFSKDTDKEFQHSSMLIFFVTCFSLSVLSYGIVAPAGLFVP 492 (794)
Q Consensus 413 ~~~p~~g~~g~~~~~~c~~g~y~~la~l~~~~~~~~i~~lf~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~P 492 (794)
+.++++.++.+... +++++..+++++++|+++|++|+|+|+|||+|+|
T Consensus 280 -----------------------------~g~Gy~~i~~~~~~---~~~~~~~ll~l~l~K~lat~ls~~sG~~GGiF~P 327 (414)
T PRK03655 280 -----------------------------LFKGLDEMQQMAAN---QAFSASDYFLLAVVKLAALVVAAASGFRGGRIFP 327 (414)
T ss_pred -----------------------------ccCCHHHHHHHHhc---CCccHHHHHHHHHHHHHHHHHHHccCCCCceehH
Confidence 12334445554432 3466777888899999999999999999999999
Q ss_pred HHHHHHHHhHHHHHHhccccCcchHHHHHHHHhhhhhhhcc----hhhHHHHHHHHHhCCcchHHHHHHHHHHHHHHH
Q 003801 493 AIVTGASYGRFVGMLVGSHSNLNHGLYAVLGAASFLGGSMR----MTVSLCVIILELTNNLLLLPMIMLVLLISKTVA 566 (794)
Q Consensus 493 sl~iGa~~G~l~g~~~~~~~~~~~~~~alvGaaa~l~g~~r----~pls~~vi~~ElTg~~~~l~pimia~~ia~~v~ 566 (794)
++++||++|..++.+++ ..++...+++||+|+++|++| +|+++.||++||| +.|+|++++++-|+.
T Consensus 328 sL~iGA~~G~~~~~l~p---~~~~~~~v~~~m~a~la~vtr~p~~sp~ta~viv~em~-----~~~l~~~~~~~~~~~ 397 (414)
T PRK03655 328 AVFVGVALGLMLHAHVP---AVPAAITVSCAILGIVLVVTRDGWLSLFMAAVVVPDTT-----LLPLLCIVMLPAWLL 397 (414)
T ss_pred HHHHHHHHHHHHHHhcc---CCChHHHHHHHHHHHHHHHhccchhhHHHHHHHHhcch-----HHHHHHHHHHHHHHH
Confidence 99999999999999985 567888999999999999999 6999999999999 677787777776665
No 19
>cd01034 EriC_like ClC chloride channel family. These protein sequences, closely related to the ClC Eric family, are putative halogen ion (Cl-, Br- and I-) transport proteins found in eubacteria. They belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=99.67 E-value=3e-15 Score=167.79 Aligned_cols=182 Identities=20% Similarity=0.237 Sum_probs=133.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHhhcccccCCCHHHH
Q 003801 96 KWSLCFLIGLIVGLIGFLNNLAVENIAGTKFVVTSNMMLANKFGMAFLSFSIPNLVLTLFASIVTATVAPVAAGSGIPEV 175 (794)
Q Consensus 96 ~w~~~~liGv~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~p~a~GsGipev 175 (794)
.|...+++|+++|+++.+|+..+.++++++...... .....+++. ..+.+++.+.+..+..|...|+|.+++
T Consensus 201 ~~~~~illGii~G~~g~lF~~~~~~~~~~~~~~~~~----~~~~~~~~~----~~~~gl~~~~~~~~~~~~~~G~G~~~i 272 (390)
T cd01034 201 AWLLVLVCGVVGGLAGGLFARLLVALSSGLPGWVRR----FRRRRPVLF----AALCGLALALIGLVSGGLTFGTGYLQA 272 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc----ccchhhHHH----HHHHHHHHHHHHHhCCCccccCcHHHH
Confidence 456899999999999999999988887755432110 001111111 122333333333334457789999999
Q ss_pred HHHHcCCCCCCcchhHHHHHHHHHHHhhhccccccCCchhHHHHHHHHHHHhhccCccccccchhhhcccCChhhhhhHH
Q 003801 176 KAYLNGVDAPGILSFRTLVIKIIGSISAVSSSLLVGKAGPMVHTGACVASLLGQGGSKKYGLTWKWLRFFKNDRDRRDFV 255 (794)
Q Consensus 176 ~~~lng~~~~~~~~~~tl~~K~~~~~~sv~sGlsvG~EGP~vhiGa~igs~l~~~~s~~~~l~~~~l~~f~~~~~~r~lv 255 (794)
+..+++. ..+.+..++.|++.+++++++|.+.|+|+|++++||++|+.+++ +++ ..+.+.++
T Consensus 273 ~~~~~~~---~~~~~~~~l~K~i~t~lt~gsG~~gG~f~P~l~iGa~~G~~~~~-----------~~~----~~~~~~~a 334 (390)
T cd01034 273 RAALEGG---GGLPLWFGLLKFLATLLSYWSGIPGGLFAPSLAVGAGLGSLLAA-----------LLG----SVSQGALV 334 (390)
T ss_pred HHHHhCC---CcccHHHHHHHHHHHHHHHHcCCCcceechHHHHHHHHHHHHHH-----------Hhc----CCCchHHH
Confidence 9988863 23456788999999999999999999999999999999999987 222 24788999
Q ss_pred HHhhhhhhhhhhcccchhHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHH
Q 003801 256 TCGSAAGIAAAFRAPVGGLLFAIEEMASWWRSALLWRAFFTTAIVAILLRA 306 (794)
Q Consensus 256 ~~GaaAGvaaaF~APigGvLFalE~~~~~~~~~~~~~~f~~~~va~~v~~~ 306 (794)
.||+||++|+++|||+++++|++|++.+ ...+.+.++++.+|..+.+.
T Consensus 335 ~~G~aA~laa~~~aPlt~~vl~~Elt~~---~~~l~p~lia~~~A~~v~~~ 382 (390)
T cd01034 335 LLGMAAFLAGVTQAPLTAFVIVMEMTGD---QQMLLPLLAAALLASGVSRL 382 (390)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHhCC---hhhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999864 24455555566555555543
No 20
>cd01033 ClC_like Putative ClC chloride channel. Clc proteins are putative halogen ion (Cl-, Br- and I-) transporters found in eubacteria. They belong to the ClC superfamily of halogen ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=99.64 E-value=2.2e-15 Score=168.33 Aligned_cols=183 Identities=19% Similarity=0.197 Sum_probs=137.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHhhcccccCCCHHHH
Q 003801 96 KWSLCFLIGLIVGLIGFLNNLAVENIAGTKFVVTSNMMLANKFGMAFLSFSIPNLVLTLFASIVTATVAPVAAGSGIPEV 175 (794)
Q Consensus 96 ~w~~~~liGv~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~p~a~GsGipev 175 (794)
.+.+.+++|+++|+++.+|+..+.++++++. ..+ ..++. ..+.+++.+. +.++.|+..|+|.+.+
T Consensus 204 ~l~~~illGi~~Gl~~~lf~~~~~~~~~~~~--------~~~--~~~~~----~~l~gl~~g~-~~~~~p~~~G~G~~~i 268 (388)
T cd01033 204 LLIWALLAGPVLGVVAAGFRRLSQAARAKRP--------KGK--RILWQ----MPLAFLVIGL-LSIFFPQILGNGRALA 268 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------ccc--chHHH----HHHHHHHHHH-HHHHHHHHhCCcHHHH
Confidence 3557889999999999999999888776431 011 11111 1233444443 4467799999999999
Q ss_pred HHHHcCCCCCCcchhHHHHHHHHHHHhhhccccccCCchhHHHHHHHHHHHhhccCccccccchhhhcccCChhhhhhHH
Q 003801 176 KAYLNGVDAPGILSFRTLVIKIIGSISAVSSSLLVGKAGPMVHTGACVASLLGQGGSKKYGLTWKWLRFFKNDRDRRDFV 255 (794)
Q Consensus 176 ~~~lng~~~~~~~~~~tl~~K~~~~~~sv~sGlsvG~EGP~vhiGa~igs~l~~~~s~~~~l~~~~l~~f~~~~~~r~lv 255 (794)
...+++..... .-+..++.|++.+.+++++|.+.|.|+|++.+||++|+.+++ +++.+.++.+.+.++
T Consensus 269 ~~~~~~~~~~~-~ll~~~~~K~~~t~lt~gsG~~GG~f~P~l~iGa~~G~~~g~-----------~~~~~~p~~~~~~~a 336 (388)
T cd01033 269 QLAFSTTLTLS-LLLILLVLKIVATLLALRAGAYGGLLTPSLALGALLGALLGI-----------VWNALLPPLSIAAFA 336 (388)
T ss_pred HHHHcCCchHH-HHHHHHHHHHHHHHHHHccCCCccchHHHHHHHHHHHHHHHH-----------HHHHhCCcccHHHHH
Confidence 88888643222 226678999999999999999999999999999999999997 222212345677899
Q ss_pred HHhhhhhhhhhhcccchhHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 003801 256 TCGSAAGIAAAFRAPVGGLLFAIEEMASWWRSALLWRAFFTTAIVAILLRAF 307 (794)
Q Consensus 256 ~~GaaAGvaaaF~APigGvLFalE~~~~~~~~~~~~~~f~~~~va~~v~~~l 307 (794)
.||+||.+|+++||||++++|++|+... +...+.+.++++++++.+.+.+
T Consensus 337 ~~GmaA~laa~~~aPlt~ivl~~Eltg~--~~~~l~Pl~ia~~~a~~vs~~~ 386 (388)
T cd01033 337 LIGAAAFLAATQKAPLTALILVLEFTRQ--NPLFLIPLMLAVAGAVAVSRFI 386 (388)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999998651 3455667777777777777643
No 21
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=99.63 E-value=8.7e-15 Score=148.73 Aligned_cols=134 Identities=18% Similarity=0.310 Sum_probs=112.5
Q ss_pred cccceeccccccceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCCCCCc
Q 003801 594 MRQLTVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNPTVND 673 (794)
Q Consensus 594 l~~l~v~diM~~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~~~~~ 673 (794)
+..++..|||+++++++++++++.++.+.|.+++.+.+||+|++ .+++|+|+.+|+.+.-....|
T Consensus 242 ~~~LtcadIMSrdVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~-----~rl~GiVt~~dl~~~a~~~p~---------- 306 (382)
T COG3448 242 MGELTCADIMSRDVVTVSTDTSIDHARKLLQEHRIKALPVLDEH-----RRLVGIVTQRDLLKHARPSPF---------- 306 (382)
T ss_pred hccccHHHhcCccceecCCcCChHHHHHHHHHcCcccccccccc-----cceeeeeeHHHHhhccCcchH----------
Confidence 56789999999999999999999999999999999999999998 899999999999542111000
Q ss_pred ccccchhhhhhccCCCCCCCccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCc
Q 003801 674 AFSQFSAVDFAKRGSGNGDKIEDIELSEEEMEMYVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSP 753 (794)
Q Consensus 674 ~~~~~~~~d~~~~~~~~~~~i~di~~~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~ 753 (794)
.++. +++ .-.++.+|++...|++++++..+....|.+.|++++||+|+ +|+
T Consensus 307 --qrlr---~~~---------------------~~~vk~imt~~v~tv~pdtpa~~lvp~lad~g~H~lpvld~---~g~ 357 (382)
T COG3448 307 --QRLR---FLR---------------------PPTVKGIMTTPVVTVRPDTPAVELVPRLADEGLHALPVLDA---AGK 357 (382)
T ss_pred --HHhh---ccC---------------------CCcccccccCcceeecCCCcHHHHHHHhhcCCcceeeEEcC---CCc
Confidence 0000 111 12367899999999999999999999999999999999998 999
Q ss_pred EEEEEecccccHHHHHhc
Q 003801 754 VMGILTRHDFMPEHILAL 771 (794)
Q Consensus 754 vvGIITr~Dll~~~~~~~ 771 (794)
++||||..|++....++.
T Consensus 358 lvGIvsQtDliaal~r~~ 375 (382)
T COG3448 358 LVGIVSQTDLIAALYRNW 375 (382)
T ss_pred EEEEeeHHHHHHHHHHHH
Confidence 999999999999877653
No 22
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=99.60 E-value=3.9e-15 Score=149.05 Aligned_cols=123 Identities=16% Similarity=0.278 Sum_probs=111.4
Q ss_pred cccceeccccccceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCCCCCc
Q 003801 594 MRQLTVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNPTVND 673 (794)
Q Consensus 594 l~~l~v~diM~~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~~~~~ 673 (794)
..+.+|+++|+++++++++++|++++.+.+-+++.++.||+|+ ++++|+++.+|+..++.+..
T Consensus 169 iPk~~V~~~~s~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~------dk~vGiit~~dI~~aia~g~----------- 231 (294)
T COG2524 169 IPKEKVKNLMSKKLITVRPDDTLREAAKLFYEKGIRGAPVVDD------DKIVGIITLSDIAKAIANGN----------- 231 (294)
T ss_pred cCcchhhhhccCCceEecCCccHHHHHHHHHHcCccCCceecC------CceEEEEEHHHHHHHHHcCC-----------
Confidence 4577899999999999999999999999999999999999998 58999999999988775422
Q ss_pred ccccchhhhhhccCCCCCCCccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCc
Q 003801 674 AFSQFSAVDFAKRGSGNGDKIEDIELSEEEMEMYVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSP 753 (794)
Q Consensus 674 ~~~~~~~~d~~~~~~~~~~~i~di~~~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~ 753 (794)
....+++||.++++++++|+.+.+|.++|..++.++|.|+|. +|+
T Consensus 232 --------------------------------~~~kV~~~M~k~vitI~eDe~i~dAir~M~~~nVGRLlV~ds---~gk 276 (294)
T COG2524 232 --------------------------------LDAKVSDYMRKNVITINEDEDIYDAIRLMNKNNVGRLLVTDS---NGK 276 (294)
T ss_pred --------------------------------ccccHHHHhccCCceEcCchhHHHHHHHHHhcCcceEEEEcc---CCc
Confidence 124578899999999999999999999999999999999998 899
Q ss_pred EEEEEecccccHHHH
Q 003801 754 VMGILTRHDFMPEHI 768 (794)
Q Consensus 754 vvGIITr~Dll~~~~ 768 (794)
.+|||||+|++....
T Consensus 277 pvGiITrTDIL~~ia 291 (294)
T COG2524 277 PVGIITRTDILTRIA 291 (294)
T ss_pred EEEEEehHHHHHHhh
Confidence 999999999998654
No 23
>PRK05277 chloride channel protein; Provisional
Probab=99.59 E-value=2.4e-14 Score=162.93 Aligned_cols=188 Identities=19% Similarity=0.227 Sum_probs=134.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHhhcccccCCCHHHH
Q 003801 96 KWSLCFLIGLIVGLIGFLNNLAVENIAGTKFVVTSNMMLANKFGMAFLSFSIPNLVLTLFASIVTATVAPVAAGSGIPEV 175 (794)
Q Consensus 96 ~w~~~~liGv~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~p~a~GsGipev 175 (794)
.+...+++|+++|+++.+|+..+.+++++..+.. .+....+ .....+.+++.+.+ .++.|...|+|.+.+
T Consensus 216 ~l~~~i~lGi~~G~~g~lf~~~~~~~~~~~~~~~------~~~~~~~---~~~~~i~gl~~g~l-~~~~p~~~g~G~~~i 285 (438)
T PRK05277 216 TLWLFLLLGIIFGIFGVLFNKLLLRTQDLFDRLH------GGNKKRW---VLMGGAVGGLCGLL-GLLAPAAVGGGFNLI 285 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------ccccHHH---HHHHHHHHHHHHHH-HHHhhhhcCChHHHH
Confidence 3557889999999999999999888776543211 1111111 12223444444543 467899999999999
Q ss_pred HHHHcCCCCCCcchhHHHHHHHHHHHhhhccccccCCchhHHHHHHHHHHHhhccCccccccchhhhcccCChhhhhhHH
Q 003801 176 KAYLNGVDAPGILSFRTLVIKIIGSISAVSSSLLVGKAGPMVHTGACVASLLGQGGSKKYGLTWKWLRFFKNDRDRRDFV 255 (794)
Q Consensus 176 ~~~lng~~~~~~~~~~tl~~K~~~~~~sv~sGlsvG~EGP~vhiGa~igs~l~~~~s~~~~l~~~~l~~f~~~~~~r~lv 255 (794)
+..++|. .+-..-+..++.|++.+.+++++|.+.|.|+|++++||++|..+++. ++. +++. +..+...++
T Consensus 286 ~~~~~~~-~~~~~l~~~~~~K~i~t~ls~gsG~~GG~f~Psl~iGa~~G~~~g~~----~~~---~~p~--~~~~~~~~a 355 (438)
T PRK05277 286 PIALAGN-FSIGMLLFIFVARFITTLLCFGSGAPGGIFAPMLALGTLLGLAFGMV----AAA---LFPQ--YHIEPGTFA 355 (438)
T ss_pred HHHHcCC-chHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHH----HHH---HcCc--ccccHHHHH
Confidence 9988862 12112234678999999999999999999999999999999998862 110 1111 245677899
Q ss_pred HHhhhhhhhhhhcccchhHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHH
Q 003801 256 TCGSAAGIAAAFRAPVGGLLFAIEEMASWWRSALLWRAFFTTAIVAILLRA 306 (794)
Q Consensus 256 ~~GaaAGvaaaF~APigGvLFalE~~~~~~~~~~~~~~f~~~~va~~v~~~ 306 (794)
.+|+||++|+++|||+++++|++|...+ ...+.+.++++.+|..+.+.
T Consensus 356 ~~G~aA~la~~~~aPlt~~v~~~Eltg~---~~~l~p~lia~~~A~~v~~~ 403 (438)
T PRK05277 356 IAGMGALFAATVRAPLTGIVLVLEMTDN---YQLILPLIITCLGATLLAQF 403 (438)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhCC---hhhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999997653 23445566666666655553
No 24
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=99.58 E-value=1.3e-14 Score=158.71 Aligned_cols=147 Identities=13% Similarity=0.114 Sum_probs=125.9
Q ss_pred cchHHHHHHHHcCCCc---cccccccccc---cceeccccccc--eeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCC
Q 003801 570 NGNIYDLIMKAKGFPY---LETHVEPYMR---QLTVGDVVTAP--LQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSE 641 (794)
Q Consensus 570 ~~~iy~~~l~~~g~p~---l~~~~~~~l~---~l~v~diM~~~--vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~ 641 (794)
..++|...+..++.-. ...++...++ .++|+|+|.++ ++++++++++.++.+.|.+++.+.+||+|++
T Consensus 164 ~dsL~~~~l~~~g~~~~~~~~~~~~~~l~~~~~~~V~~im~~~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~~---- 239 (321)
T PRK11543 164 GDALAMAVMQARGFNEEDFARSHPAGALGARLLNKVHHLMRRDDAIPQVALTASVMDAMLELSRTGLGLVAVCDAQ---- 239 (321)
T ss_pred HHHHHHHHHHHcCCCHHHhccCCCCCHHHHHHHhHHHHHhccCCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcCC----
Confidence 4588998898888765 6667777888 89999999998 9999999999999999998888999999987
Q ss_pred CCeEEEEEeHHHHHHHHHhccCCCCCCCCCCcccccchhhhhhccCCCCCCCccccccchhhhhcccccccccccCCcee
Q 003801 642 TPILYGLILRAHLITLLKKKAFLPTPNPTVNDAFSQFSAVDFAKRGSGNGDKIEDIELSEEEMEMYVDLHPFANASPYTV 721 (794)
Q Consensus 642 ~~~l~GiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~di~~~~~~~~~~idl~~im~~~p~tV 721 (794)
++++|+|+.+|+.+.+..... ....+.++|++++.++
T Consensus 240 -g~~iG~vt~~dl~~~~~~~~~------------------------------------------~~~~v~~im~~~~~~v 276 (321)
T PRK11543 240 -QQVQGVFTDGDLRRWLVGGGA------------------------------------------LTTPVNEAMTRGGTTL 276 (321)
T ss_pred -CcEEEEecHHHHHHHHhCCCC------------------------------------------cCCcHHHhcCCCCEEE
Confidence 899999999999765432110 0112567888899999
Q ss_pred cCCCCHHHHHHHHHHcCCCEEEEeecCCCCCcEEEEEecccccHH
Q 003801 722 VETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHDFMPE 766 (794)
Q Consensus 722 ~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~vvGIITr~Dll~~ 766 (794)
.+++++.++++.|.+.+.+++||||+ +++++|+||++|++++
T Consensus 277 ~~~~~l~~a~~~m~~~~~~~lpVvd~---~~~lvGvIt~~di~~~ 318 (321)
T PRK11543 277 QAQSRAIDAKEILMKRKITAAPVVDE---NGKLTGAINLQDFYQA 318 (321)
T ss_pred CCCCCHHHHHHHHHHcCCCEEEEEcC---CCeEEEEEEHHHHHhc
Confidence 99999999999999999999999997 6899999999999864
No 25
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=99.56 E-value=2.4e-14 Score=157.05 Aligned_cols=147 Identities=16% Similarity=0.228 Sum_probs=123.6
Q ss_pred cchHHHHHHHHcCCCc---ccccccccc---ccceecccccc--ceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCC
Q 003801 570 NGNIYDLIMKAKGFPY---LETHVEPYM---RQLTVGDVVTA--PLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSE 641 (794)
Q Consensus 570 ~~~iy~~~l~~~g~p~---l~~~~~~~l---~~l~v~diM~~--~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~ 641 (794)
..++|...+..+|.-. ...++...+ ..++|+|+|++ +++++++++++.++.+.|.+++++.+||+|++
T Consensus 169 ~dsL~~~~l~~~g~~~~~~~~~~~~~~l~~~~~~~V~dim~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~~---- 244 (326)
T PRK10892 169 GDALAVALLKARGFTAEDFALSHPGGALGRKLLLRVSDIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDDN---- 244 (326)
T ss_pred HHHHHHHHHHHhCCCHHHHHhcCCCchhcccccCcHHHHhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcCC----
Confidence 5688998898888876 566667677 88999999997 89999999999999999998888888888876
Q ss_pred CCeEEEEEeHHHHHHHHHhccCCCCCCCCCCcccccchhhhhhccCCCCCCCccccccchhhhhcccccccccccCCcee
Q 003801 642 TPILYGLILRAHLITLLKKKAFLPTPNPTVNDAFSQFSAVDFAKRGSGNGDKIEDIELSEEEMEMYVDLHPFANASPYTV 721 (794)
Q Consensus 642 ~~~l~GiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~di~~~~~~~~~~idl~~im~~~p~tV 721 (794)
++++|+|+.+|+.+.+.+.. . . ...+++++|++++.++
T Consensus 245 -g~lvGivt~~Dl~~~~~~~~----~--------------------------~-----------~~~~v~~im~~~~~~v 282 (326)
T PRK10892 245 -MKIEGIFTDGDLRRVFDMGI----D--------------------------L-----------RQASIADVMTPGGIRV 282 (326)
T ss_pred -CcEEEEEecHHHHHHHhcCC----C--------------------------c-----------ccCCHHHhcCCCCEEE
Confidence 89999999999976543210 0 0 0124678899999999
Q ss_pred cCCCCHHHHHHHHHHcCCCEEEEeecCCCCCcEEEEEecccccHH
Q 003801 722 VETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHDFMPE 766 (794)
Q Consensus 722 ~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~vvGIITr~Dll~~ 766 (794)
.+++++.+++++|.+++.+++||+| +++++|+||++|+++.
T Consensus 283 ~~~~~l~~a~~~m~~~~~~~lpVv~----~~~lvGiit~~dil~~ 323 (326)
T PRK10892 283 RPGILAVDALNLMQSRHITSVLVAD----GDHLLGVLHMHDLLRA 323 (326)
T ss_pred CCCCCHHHHHHHHHHCCCcEEEEee----CCEEEEEEEhHHhHhc
Confidence 9999999999999999999999998 4789999999999875
No 26
>cd00400 Voltage_gated_ClC CLC voltage-gated chloride channel. The ClC chloride channels catalyse the selective flow of Cl- ions across cell membranes, thereby regulating electrical excitation in skeletal muscle and the flow of salt and water across epithelial barriers. This domain is found in the halogen ions (Cl-, Br- and I-) transport proteins of the ClC family. The ClC channels are found in all three kingdoms of life and perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, transepithelial transport in animals, and the extreme acid resistance response in eubacteria. They lack any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. Unlike cation-selective ion channels, which form oligomers containing a single pore along the axis of symmetry, the ClC channels form two-pore
Probab=99.53 E-value=1.1e-13 Score=155.26 Aligned_cols=165 Identities=21% Similarity=0.258 Sum_probs=125.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHhhcccccCCCHHH
Q 003801 95 MKWSLCFLIGLIVGLIGFLNNLAVENIAGTKFVVTSNMMLANKFGMAFLSFSIPNLVLTLFASIVTATVAPVAAGSGIPE 174 (794)
Q Consensus 95 ~~w~~~~liGv~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~p~a~GsGipe 174 (794)
..+...+++|+++|+++.+|+...+++++++... . .++.+. +++.+++.+. +.++.|+..|+|.++
T Consensus 204 ~~~~~~il~Gv~~g~~g~~f~~~~~~~~~~~~~~---------~-~~~~~~---~~i~gll~~~-~~~~~p~~~g~G~~~ 269 (383)
T cd00400 204 LELPLYLLLGLLAGLVGVLFVRLLYKIERLFRRL---------P-IPPWLR---PALGGLLLGL-LGLFLPQVLGSGYGA 269 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---------C-CcHHHH---HHHHHHHHHH-HHHHHHHHHcCcHHH
Confidence 3456789999999999999999998887654321 0 111112 2344445444 456779999999999
Q ss_pred HHHHHcCCCCCCcchhHHHHHHHHHHHhhhccccccCCchhHHHHHHHHHHHhhccCccccccchhhhcccCChhhhhhH
Q 003801 175 VKAYLNGVDAPGILSFRTLVIKIIGSISAVSSSLLVGKAGPMVHTGACVASLLGQGGSKKYGLTWKWLRFFKNDRDRRDF 254 (794)
Q Consensus 175 v~~~lng~~~~~~~~~~tl~~K~~~~~~sv~sGlsvG~EGP~vhiGa~igs~l~~~~s~~~~l~~~~l~~f~~~~~~r~l 254 (794)
+...+++.. +-..-...++.|++.+++++++|.+.|.|+|++.+||++|..+++. ++. ++. .++.+.+.+
T Consensus 270 ~~~~~~~~~-~~~~l~~~~~~K~~~t~l~~~sG~~GG~~~P~l~iGa~~G~~~~~~----~~~---~~~--~~~~~~~~~ 339 (383)
T cd00400 270 ILLALAGEL-SLLLLLLLLLLKLLATALTLGSGFPGGVFAPSLFIGAALGAAFGLL----LPA---LFP--GLVASPGAY 339 (383)
T ss_pred HHHHHcCCh-hHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHH----HHH---hCC--cccCChHHH
Confidence 988877622 1112245788999999999999999999999999999999999972 211 111 134578899
Q ss_pred HHHhhhhhhhhhhcccchhHHHHHHHHhh
Q 003801 255 VTCGSAAGIAAAFRAPVGGLLFAIEEMAS 283 (794)
Q Consensus 255 v~~GaaAGvaaaF~APigGvLFalE~~~~ 283 (794)
+.||++|++++++|+|+++++|++|++.+
T Consensus 340 ~~~G~aa~la~~~~aPlt~~vl~~Eltg~ 368 (383)
T cd00400 340 ALVGMAALLAAVLRAPLTAILLVLELTGD 368 (383)
T ss_pred HHHHHHHHHHHHhCchHHHHHHHHHHhCC
Confidence 99999999999999999999999998864
No 27
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=99.47 E-value=4.8e-13 Score=157.55 Aligned_cols=182 Identities=18% Similarity=0.178 Sum_probs=129.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHhhcccccCCCHHHHH
Q 003801 97 WSLCFLIGLIVGLIGFLNNLAVENIAGTKFVVTSNMMLANKFGMAFLSFSIPNLVLTLFASIVTATVAPVAAGSGIPEVK 176 (794)
Q Consensus 97 w~~~~liGv~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~p~a~GsGipev~ 176 (794)
+.+.+++|+++|+++.+|+..+.+.++++... . .+..+.. .+.+++.+. +.++.|...|+|.+.++
T Consensus 239 ~~~~~~lGv~~G~~~~~f~~~~~~~~~~~~~~---------~-~~~~~~~---~~~gl~~g~-l~~~~p~~~g~G~~~i~ 304 (574)
T PRK01862 239 VLLFVALGVLCGAAAPQFLRLLDASKNQFKRL---------P-VPLPVRL---ALGGLLVGV-ISVWVPEVWGNGYSVVN 304 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---------C-CchhHHH---HHHHHHHHH-HHHHHHHHhcCCHHHHH
Confidence 44678999999999999999988876543211 1 1111122 234444454 34567999999999999
Q ss_pred HHHcCCCCCCcchhHHHHHHHHHHHhhhccccccCCchhHHHHHHHHHHHhhccCccccccchhhhcccCCh-hhhhhHH
Q 003801 177 AYLNGVDAPGILSFRTLVIKIIGSISAVSSSLLVGKAGPMVHTGACVASLLGQGGSKKYGLTWKWLRFFKND-RDRRDFV 255 (794)
Q Consensus 177 ~~lng~~~~~~~~~~tl~~K~~~~~~sv~sGlsvG~EGP~vhiGa~igs~l~~~~s~~~~l~~~~l~~f~~~-~~~r~lv 255 (794)
..+++.. .-..-...++.|++.+++++++|.+.|.++|++.+||++|+.+++. ++. ++.+. .+.-.++
T Consensus 305 ~~~~~~~-~~~~l~~~~~~K~~~t~~t~g~G~~GG~f~P~l~iGa~~G~~~g~~----~~~------~~~~~~~~~~~~a 373 (574)
T PRK01862 305 TILHAPW-TWQALVAVLVAKLIATAATAGSGAVGGVFTPTLFVGAVVGSLFGLA----MHA------LWPGHTSAPFAYA 373 (574)
T ss_pred HHHcCCc-hHHHHHHHHHHHHHHHHHHHccCCCccchhhHHHHHHHHHHHHHHH----HHH------hCCCcccchHHHH
Confidence 9887621 1111234568999999999999999999999999999999999972 211 11111 2233488
Q ss_pred HHhhhhhhhhhhcccchhHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHH
Q 003801 256 TCGSAAGIAAAFRAPVGGLLFAIEEMASWWRSALLWRAFFTTAIVAILLRA 306 (794)
Q Consensus 256 ~~GaaAGvaaaF~APigGvLFalE~~~~~~~~~~~~~~f~~~~va~~v~~~ 306 (794)
.+|+||.+|+++|||+++++|++|.+.+ ...+.+.+++|++|..+.+.
T Consensus 374 ~vGmaa~~aa~~~aPlt~i~l~~Elt~~---~~~~~P~~ia~~~a~~v~~~ 421 (574)
T PRK01862 374 MVGMGAFLAGATQAPLMAILMIFEMTLS---YQVVLPLMVSCVVAYFTARA 421 (574)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHhCC---HhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998744 34556666666666666553
No 28
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=99.46 E-value=2.6e-13 Score=126.45 Aligned_cols=122 Identities=22% Similarity=0.294 Sum_probs=104.0
Q ss_pred ccceeccccccceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCCCCCcc
Q 003801 595 RQLTVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNPTVNDA 674 (794)
Q Consensus 595 ~~l~v~diM~~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~~~~~~ 674 (794)
..++++++|++|++.+++++++.+++++|++.+++.+||+++ ++++|-|+.+++.+.+.+.. +
T Consensus 63 ~~ita~~iM~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~------~k~VGsItE~~iv~~~le~~--e--------- 125 (187)
T COG3620 63 TRITAKTIMHSPVVSVSPDDSISDVVNLMRDKGISQLPVIEE------DKVVGSITENDIVRALLEGM--E--------- 125 (187)
T ss_pred ceEeHhhhccCCeeEECchhhHHHHHHHHHHcCCccCceeeC------CeeeeeecHHHHHHHHhccc--c---------
Confidence 568999999999999999999999999999999999999998 69999999999987764321 0
Q ss_pred cccchhhhhhccCCCCCCCccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCcE
Q 003801 675 FSQFSAVDFAKRGSGNGDKIEDIELSEEEMEMYVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPV 754 (794)
Q Consensus 675 ~~~~~~~d~~~~~~~~~~~i~di~~~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~v 754 (794)
++ ....++++|..+.++|+++.++..+.+++..+.. +.|++ +|++
T Consensus 126 ------------------~i-----------~~~~vr~vM~e~fP~Vs~~~~l~vI~~LL~~~~A--VlV~e----~G~~ 170 (187)
T COG3620 126 ------------------SI-----------RSLRVREVMGEPFPTVSPDESLNVISQLLEEHPA--VLVVE----NGKV 170 (187)
T ss_pred ------------------ch-----------hhhhHHHHhcCCCCcCCCCCCHHHHHHHHhhCCe--EEEEe----CCce
Confidence 00 1245678898899999999999999999988766 77775 6999
Q ss_pred EEEEecccccHHHH
Q 003801 755 MGILTRHDFMPEHI 768 (794)
Q Consensus 755 vGIITr~Dll~~~~ 768 (794)
+||||++|+++...
T Consensus 171 vGIITk~DI~k~~~ 184 (187)
T COG3620 171 VGIITKADIMKLLA 184 (187)
T ss_pred EEEEeHHHHHHHHh
Confidence 99999999998543
No 29
>PRK01610 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=99.45 E-value=1.4e-12 Score=147.04 Aligned_cols=183 Identities=19% Similarity=0.248 Sum_probs=128.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHhhcccccCCCHHHH
Q 003801 96 KWSLCFLIGLIVGLIGFLNNLAVENIAGTKFVVTSNMMLANKFGMAFLSFSIPNLVLTLFASIVTATVAPVAAGSGIPEV 175 (794)
Q Consensus 96 ~w~~~~liGv~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~p~a~GsGipev 175 (794)
.+...+++|+++|+++.+|+..+.+.+++.... ...+++ . +.+.+++.+.+. ++.|+..|+|.+.+
T Consensus 220 ~l~~~i~lGii~Gl~g~~f~~~~~~~~~~~~~~---------~~~~~~-~---~~lggli~g~l~-~~~p~~~G~G~~~i 285 (418)
T PRK01610 220 DYALIISTGLLAGLCGPLLLTLMNASHRGFVSL---------KLAPPW-Q---LALGGLIVGLLS-LFTPAVWGNGYSVV 285 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---------ccchhH-H---HHHHHHHHHHHH-HHhhHHhCCcHHHH
Confidence 455789999999999999999887776543221 011221 1 234455555544 44599999999999
Q ss_pred HHHHcCCCCCCcchhHHHHHHHHHHHhhhccccccCCchhHHHHHHHHHHHhhccCccccccchhhhcccCChhh-hhhH
Q 003801 176 KAYLNGVDAPGILSFRTLVIKIIGSISAVSSSLLVGKAGPMVHTGACVASLLGQGGSKKYGLTWKWLRFFKNDRD-RRDF 254 (794)
Q Consensus 176 ~~~lng~~~~~~~~~~tl~~K~~~~~~sv~sGlsvG~EGP~vhiGa~igs~l~~~~s~~~~l~~~~l~~f~~~~~-~r~l 254 (794)
+..+++.. .-..-.-.++.|++.+.+++++|.+.|.++|++.+||++|+.+++. ++. ++.+..+ .-.+
T Consensus 286 ~~~~~~~~-~~~~l~~l~l~K~~~t~lt~gsG~~GG~f~P~l~iGa~~G~~~g~~----~~~------~~~~~~~~~~~~ 354 (418)
T PRK01610 286 QSFLTAPP-LLMLIAGIFLCKLLAVLASSGSGAPGGVFTPTLFVGLAIGMLYGRS----LGL------WLPDGEEITLLL 354 (418)
T ss_pred HHHHcCCh-hHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHH----HHH------hCCCcccchHHH
Confidence 98887621 1011112357899999999999999999999999999999999972 110 1112222 3346
Q ss_pred HHHhhhhhhhhhhcccchhHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHH
Q 003801 255 VTCGSAAGIAAAFRAPVGGLLFAIEEMASWWRSALLWRAFFTTAIVAILLRA 306 (794)
Q Consensus 255 v~~GaaAGvaaaF~APigGvLFalE~~~~~~~~~~~~~~f~~~~va~~v~~~ 306 (794)
..+|+||.+|+++|||++++++++|.+.++ ..+.+.+++|+++..+.+.
T Consensus 355 a~vGmaA~laa~~~aPltaivl~~Eltg~~---~~~~p~~ia~~ia~~vs~~ 403 (418)
T PRK01610 355 GLTGMATLLAATTHAPIMSTLMICEMTGEY---QLLPGLLIACVIASVISRT 403 (418)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHhCCH---hHHHHHHHHHHHHHHHHHH
Confidence 679999999999999999999999986542 2344556666666666653
No 30
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=99.43 E-value=1.5e-13 Score=143.08 Aligned_cols=149 Identities=19% Similarity=0.294 Sum_probs=126.6
Q ss_pred HHHHHHHHHHHHHHHhhhcchHHHHHHHHcCCCccccccccccccceecccccc--ceeEEeccccHHHHHHHHhcCCCC
Q 003801 552 LPMIMLVLLISKTVADAFNGNIYDLIMKAKGFPYLETHVEPYMRQLTVGDVVTA--PLQLFHGIEKAGNVVHVLRTTRHN 629 (794)
Q Consensus 552 l~pimia~~ia~~v~~~~~~~iy~~~l~~~g~p~l~~~~~~~l~~l~v~diM~~--~vv~l~~~~sv~~a~~~L~~~~~~ 629 (794)
-+|++-+..=.+.|+..+|+-+|+.+++. +-++|+|+|+| +..++++++++++-.++-++++|+
T Consensus 157 ~lPvlstsYDTFTVAtmIN~Al~n~lIKk--------------dI~~Vedi~~P~~~~~yL~~~d~v~d~~~l~~kt~~s 222 (432)
T COG4109 157 GLPVLSTSYDTFTVATMINKALSNQLIKK--------------DIITVEDIMTPLEDTSYLRETDTVEDWLDLVEKTGHS 222 (432)
T ss_pred CCceEEecccceeHHHHHHHHHHHhhhhh--------------heeeHHHhccccccceeccccccHHHHHHHHHHcCCC
Confidence 45666666666677777788999988862 23689999994 788999999999999999999999
Q ss_pred eeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCCCCCcccccchhhhhhccCCCCCCCccccccchhhhhcccc
Q 003801 630 GFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNPTVNDAFSQFSAVDFAKRGSGNGDKIEDIELSEEEMEMYVD 709 (794)
Q Consensus 630 ~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~di~~~~~~~~~~id 709 (794)
.|||+|+. .+++|+|+.+|+.... . ...
T Consensus 223 RfPVvn~~-----~kvvGvVt~rDv~~~~---~--------------------------------------------~t~ 250 (432)
T COG4109 223 RFPVVNRS-----MKVVGVVTMRDVLDKK---P--------------------------------------------STT 250 (432)
T ss_pred ccceeccc-----ceEEEEEEehhhhcCC---C--------------------------------------------Ccc
Confidence 99999997 8999999999984310 0 234
Q ss_pred cccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCcEEEEEecccccHHHHH
Q 003801 710 LHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHDFMPEHIL 769 (794)
Q Consensus 710 l~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~vvGIITr~Dll~~~~~ 769 (794)
+..+|+++|.+|.+.+|++.+.+.|-=.|+..+||+|+ +++++|||||+|+++....
T Consensus 251 ieKVMtknp~tv~~~tsVAsvaq~MiwE~iem~PVv~~---n~~llGiitR~dvlk~lq~ 307 (432)
T COG4109 251 IEKVMTKNPITVRAKTSVASVAQMMIWEGIEMLPVVDS---NNTLLGIITRQDVLKSLQM 307 (432)
T ss_pred HHHHhccCCeeecccchHHHHHHHHHhccceeeeEEcC---CceEEEEEEHHHHHHHHHH
Confidence 56789999999999999999999999999999999998 8999999999999987643
No 31
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.43 E-value=1.2e-12 Score=121.42 Aligned_cols=118 Identities=18% Similarity=0.221 Sum_probs=93.5
Q ss_pred ceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCCCCCcccccchhhhhhc
Q 003801 606 PLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNPTVNDAFSQFSAVDFAK 685 (794)
Q Consensus 606 ~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~d~~~ 685 (794)
++.++++++++.++.+.|.+++++.+||+|++ ++++|+++++|+...+.++...... ....+
T Consensus 2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~~-----~~~~Giv~~~dl~~~~~~~~~~~~~----------~~~~~--- 63 (120)
T cd04641 2 NIATARPDTPLIDVLDMLVERRVSALPIVDEN-----GKVVDVYSRFDVINLAKEGAYNNLD----------LTVGE--- 63 (120)
T ss_pred CcEEEcCCCCHHHHHHHHHHcCCCeeeEECCC-----CeEEEEEeHHHHHHHHhcCcccccc----------CCHHH---
Confidence 56789999999999999999999999999886 8999999999998765432210000 00000
Q ss_pred cCCCCCCCccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCcEEEEEecccccH
Q 003801 686 RGSGNGDKIEDIELSEEEMEMYVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHDFMP 765 (794)
Q Consensus 686 ~~~~~~~~i~di~~~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~vvGIITr~Dll~ 765 (794)
.+..++.|..++.++++++++.+++++|.+.+.+++||+|+ +|+++|+||++|+++
T Consensus 64 ---------------------~~~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~---~~~~~Givt~~di~~ 119 (120)
T cd04641 64 ---------------------ALERRSQDFEGVRTCSPDDCLRTIFDLIVKARVHRLVVVDE---NKRVEGIISLSDILQ 119 (120)
T ss_pred ---------------------HHhhcccCCCCCeEEcCCCcHHHHHHHHHhcCccEEEEECC---CCCEEEEEEHHHhhc
Confidence 01123456667789999999999999999999999999997 689999999999875
No 32
>cd03682 ClC_sycA_like ClC sycA-like chloride channel proteins. This ClC family presents in bacteria, where it facilitates acid resistance in acidic soil. Mutation of this gene (sycA) in Rhizobium tropici CIAT899 causes serious deficiencies in nodule development, nodulation competitiveness, and N2 fixation on Phaseolus vulgaris plants, due to its reduced ability for acid resistance. This family is part of the ClC chloride channel superfamiy. These proteins catalyse the selective flow of Cl- ions across cell membranes and Cl-/H+ exchange transport. These proteins share two characteristics that are apparently inherent to the entire ClC chloride channel superfamily: a unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=99.40 E-value=8.3e-12 Score=139.38 Aligned_cols=153 Identities=19% Similarity=0.262 Sum_probs=116.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHhh-cccccCCCHHH
Q 003801 96 KWSLCFLIGLIVGLIGFLNNLAVENIAGTKFVVTSNMMLANKFGMAFLSFSIPNLVLTLFASIVTATV-APVAAGSGIPE 174 (794)
Q Consensus 96 ~w~~~~liGv~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~-~p~a~GsGipe 174 (794)
.+...+++|+++|+++.+|+..+.++++++.... ...|+ .+++.+++.+.+..++ .|...|.|..+
T Consensus 199 ~l~~~i~~Gi~~gl~g~~f~~~~~~~~~~~~~~~---------~~~~~----~~~iggl~~g~~~~~~~~~~~~G~g~~~ 265 (378)
T cd03682 199 LFVKVILAGIIFGLAGRLFAELLHFLKKLLKKRI---------KNPYL----RPFVGGLLIILLVYLLGSRRYLGLGTPL 265 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---------CCcHH----HHHHHHHHHHHHHHHhcCCccccCCHHH
Confidence 3457889999999999999999988877653321 11222 2234445555444332 34467999988
Q ss_pred HHH-HHcCCCCCCcchhHHHHHHHHHHHhhhccccccCCchhHHHHHHHHHHHhhccCccccccchhhhcccCChhhhhh
Q 003801 175 VKA-YLNGVDAPGILSFRTLVIKIIGSISAVSSSLLVGKAGPMVHTGACVASLLGQGGSKKYGLTWKWLRFFKNDRDRRD 253 (794)
Q Consensus 175 v~~-~lng~~~~~~~~~~tl~~K~~~~~~sv~sGlsvG~EGP~vhiGa~igs~l~~~~s~~~~l~~~~l~~f~~~~~~r~ 253 (794)
++. ..++ ..+...++.|++.+.+++++|.+.|.+.|++.+||++|+.+++ +++. +.-.
T Consensus 266 i~~~~~~~-----~~~~~~~l~K~~~t~~s~g~G~~GG~f~P~l~iGa~~G~~~~~-----------~~~~-----~~~~ 324 (378)
T cd03682 266 IEDSFFGG-----TVYPYDWLLKLIFTVITLGAGFKGGEVTPLFFIGATLGNALAP-----------ILGL-----PVSL 324 (378)
T ss_pred HHHHHhcC-----CchHHHHHHHHHHHHHHHhcCCCCceechHHHHHHHHHHHHHH-----------HHCC-----CHHH
Confidence 877 4433 2346678999999999999999999999999999999999998 2221 2347
Q ss_pred HHHHhhhhhhhhhhcccchhHHHHHHHHh
Q 003801 254 FVTCGSAAGIAAAFRAPVGGLLFAIEEMA 282 (794)
Q Consensus 254 lv~~GaaAGvaaaF~APigGvLFalE~~~ 282 (794)
++.||+||.+++++|||+++++|++|.+.
T Consensus 325 ~~~~Gmaa~laa~~raPlt~ivl~~Eltg 353 (378)
T cd03682 325 LAALGFVAVFAGATNTPLACIIMGIELFG 353 (378)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHhC
Confidence 89999999999999999999999999986
No 33
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.39 E-value=3.3e-12 Score=117.40 Aligned_cols=111 Identities=12% Similarity=0.149 Sum_probs=93.3
Q ss_pred eeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCCCCCcccccchhhhhhcc
Q 003801 607 LQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNPTVNDAFSQFSAVDFAKR 686 (794)
Q Consensus 607 vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 686 (794)
+.++++++++.++.+.|.+++++.+||+|++ ++++|+|+.+|+.+.+......
T Consensus 3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~-----g~~~G~vt~~dl~~~~~~~~~~---------------------- 55 (114)
T cd04619 3 LAKIDVNATLQRAAKILGEPGIDLVVVCDPH-----GKLAGVLTKTDVVRQMGRCGGP---------------------- 55 (114)
T ss_pred eEEECCCCcHHHHHHHHHhcCCCEEEEECCC-----CCEEEEEehHHHHHHHhhcCCC----------------------
Confidence 5678999999999999999999999999987 8999999999997654321000
Q ss_pred CCCCCCCccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCcEEEEEecccccH
Q 003801 687 GSGNGDKIEDIELSEEEMEMYVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHDFMP 765 (794)
Q Consensus 687 ~~~~~~~i~di~~~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~vvGIITr~Dll~ 765 (794)
.....+.++|++++.++.+++++.++++.|.+.+.+++||+|+ +|+++|+||++|+++
T Consensus 56 ------------------~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~~~~~Gvi~~~dl~~ 113 (114)
T cd04619 56 ------------------GCTAPVENVMTRAVVSCRPGDLLHDVWQVMKQRGLKNIPVVDE---NARPLGVLNARDALK 113 (114)
T ss_pred ------------------cccCCHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCeEEEECC---CCcEEEEEEhHhhcc
Confidence 0012356678888999999999999999999999999999997 789999999999975
No 34
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=99.38 E-value=2.2e-12 Score=138.40 Aligned_cols=130 Identities=18% Similarity=0.300 Sum_probs=108.1
Q ss_pred cccceecccccc--ceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCCCC
Q 003801 594 MRQLTVGDVVTA--PLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNPTV 671 (794)
Q Consensus 594 l~~l~v~diM~~--~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~~~ 671 (794)
++..+|+|+|++ +++++++++++.++.+.+.+++|+.+||++++ .++++|+|+.+|++..+.... .
T Consensus 64 l~~~~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~----~d~iiGiv~~kDll~~~~~~~----~---- 131 (292)
T PRK15094 64 IADQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISED----KDHIEGILMAKDLLPFMRSDA----E---- 131 (292)
T ss_pred cCCCEEeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCC----CCcEEEEEEHHHHHhHhhccC----C----
Confidence 566799999998 79999999999999999999999999999864 168999999999975432100 0
Q ss_pred CcccccchhhhhhccCCCCCCCccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCC
Q 003801 672 NDAFSQFSAVDFAKRGSGNGDKIEDIELSEEEMEMYVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNG 751 (794)
Q Consensus 672 ~~~~~~~~~~d~~~~~~~~~~~i~di~~~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~ 751 (794)
..++.++|. ++++|++++++.++++.|++.+.+.+||+|+ .
T Consensus 132 -----------------------------------~~~l~~l~r-~~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe---~ 172 (292)
T PRK15094 132 -----------------------------------AFSMDKVLR-QAVVVPESKRVDRMLKEFRSQRYHMAIVIDE---F 172 (292)
T ss_pred -----------------------------------cCCHHHHcC-CCcCcCCCCcHHHHHHHHHhcCCEEEEEEeC---C
Confidence 012445664 4568999999999999999999999999998 7
Q ss_pred CcEEEEEecccccHHHHHhcCcc
Q 003801 752 SPVMGILTRHDFMPEHILALNPL 774 (794)
Q Consensus 752 g~vvGIITr~Dll~~~~~~~~~~ 774 (794)
|.++|+||++|++++...+...+
T Consensus 173 G~viGiVTleDIle~ivGei~de 195 (292)
T PRK15094 173 GGVSGLVTIEDILELIVGEIEDE 195 (292)
T ss_pred CCEEEEeEHHHHHHHHhCCCccc
Confidence 88999999999999988765443
No 35
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.38 E-value=3.8e-12 Score=116.48 Aligned_cols=109 Identities=12% Similarity=0.167 Sum_probs=91.1
Q ss_pred ceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCCCCCcccccchhhhhhc
Q 003801 606 PLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNPTVNDAFSQFSAVDFAK 685 (794)
Q Consensus 606 ~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~d~~~ 685 (794)
++.++++++++.++.+.|.+++++.+||+|++ ++++|+|+..|+...... ..
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~~-----~~~~G~v~~~dl~~~~~~-~~---------------------- 53 (111)
T cd04603 2 QTVSVNCENPLREAIKMINELGARAVVVVDEE-----NKVLGQVTLSDLLEIGPN-DY---------------------- 53 (111)
T ss_pred ceEEeCCCCcHHHHHHHHHHcCCCEEEEEcCC-----CCEEEEEEHHHHHhhccc-cc----------------------
Confidence 35678999999999999999999999999987 899999999999652110 00
Q ss_pred cCCCCCCCccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCcEEEEEecccccH
Q 003801 686 RGSGNGDKIEDIELSEEEMEMYVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHDFMP 765 (794)
Q Consensus 686 ~~~~~~~~i~di~~~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~vvGIITr~Dll~ 765 (794)
....+.++|..++.++++++++.+++++|.+.+.+++||+|+ +|+++|+||++|+++
T Consensus 54 --------------------~~~~v~~~~~~~~~~v~~~~~l~~al~~m~~~~~~~lpVvd~---~~~~~Giit~~di~~ 110 (111)
T cd04603 54 --------------------ETLKVCEVYIVPVPIVYCDSKVTDLLRIFRETEPPVVAVVDK---EGKLVGTIYERELLR 110 (111)
T ss_pred --------------------cccChhheeecCCcEECCCCcHHHHHHHHHHcCCCeEEEEcC---CCeEEEEEEhHHhhc
Confidence 001245677788889999999999999999999999999997 789999999999975
No 36
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.37 E-value=1.6e-12 Score=147.63 Aligned_cols=143 Identities=15% Similarity=0.227 Sum_probs=117.7
Q ss_pred chHHHHHHHHcCCCccccc-----cccccccceeccccccceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeE
Q 003801 571 GNIYDLIMKAKGFPYLETH-----VEPYMRQLTVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPIL 645 (794)
Q Consensus 571 ~~iy~~~l~~~g~p~l~~~-----~~~~l~~l~v~diM~~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l 645 (794)
..+|..+.+..|+-+++.+ ....++.++++++|.++++++++++++.++.+.|.+++++.+||+|++ +++
T Consensus 58 ~~MAiaLAr~GGiGvih~nl~~~~q~~~l~~VKv~~iMi~~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~~-----gkl 132 (479)
T PRK07807 58 RRMAETVARRGGLVVLPQDIPIDVVAEVVAWVKSRDLVFDTPVTLSPDDTVGDALALLPKRAHGAVVVVDEE-----GRP 132 (479)
T ss_pred HHHHHHHHHCCCceEeeCCCCHHHHHHHHhhcccccccccCCeEECCCCCHHHHHHHHHhcCCceEEEECCC-----CeE
Confidence 4566666555545444322 234578899999999999999999999999999999999999999987 899
Q ss_pred EEEEeHHHHHHHHHhccCCCCCCCCCCcccccchhhhhhccCCCCCCCccccccchhhhhcccccccccccCCceecCCC
Q 003801 646 YGLILRAHLITLLKKKAFLPTPNPTVNDAFSQFSAVDFAKRGSGNGDKIEDIELSEEEMEMYVDLHPFANASPYTVVETM 725 (794)
Q Consensus 646 ~GiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~di~~~~~~~~~~idl~~im~~~p~tV~~~~ 725 (794)
+|+|+.+|+... . . ...++++|++++.++++++
T Consensus 133 vGIVT~rDL~~~----~----~---------------------------------------~~~V~diMt~~~itV~~d~ 165 (479)
T PRK07807 133 VGVVTEADCAGV----D----R---------------------------------------FTQVRDVMSTDLVTLPAGT 165 (479)
T ss_pred EEEEeHHHHhcC----c----c---------------------------------------CCCHHHhccCCceEECCCC
Confidence 999999998321 0 0 0135678889999999999
Q ss_pred CHHHHHHHHHHcCCCEEEEeecCCCCCcEEEEEecccccHHHH
Q 003801 726 SLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHDFMPEHI 768 (794)
Q Consensus 726 sL~~a~~lf~~~glr~LpVVd~~~~~g~vvGIITr~Dll~~~~ 768 (794)
++.+++++|.+++.+++||+|+ +++++|+||++|+++...
T Consensus 166 sL~eAl~lM~~~~i~~LPVVD~---~g~lvGIIT~~DIl~~~~ 205 (479)
T PRK07807 166 DPREAFDLLEAARVKLAPVVDA---DGRLVGVLTRTGALRATI 205 (479)
T ss_pred cHHHHHHHHHhcCCCEEEEEcC---CCeEEEEEEHHHHHHHhh
Confidence 9999999999999999999997 789999999999998544
No 37
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=99.37 E-value=2.4e-12 Score=144.61 Aligned_cols=127 Identities=18% Similarity=0.236 Sum_probs=109.0
Q ss_pred cccceecccccc--ceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCCCC
Q 003801 594 MRQLTVGDVVTA--PLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNPTV 671 (794)
Q Consensus 594 l~~l~v~diM~~--~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~~~ 671 (794)
+++.+|+|+|++ ++++++.+++++++.+.+.+++|+.+||++++ .++++|+|+.+|++..+.+.
T Consensus 188 l~~~~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~----~d~ivGiv~~kDll~~~~~~---------- 253 (408)
T TIGR03520 188 FGNTDTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKET----IDNITGVLYIKDLLPHLNKK---------- 253 (408)
T ss_pred cCCCEeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCC----CCceEEEEEHHHHHhHhccC----------
Confidence 678899999997 89999999999999999999999999999874 26899999999996532210
Q ss_pred CcccccchhhhhhccCCCCCCCccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCC
Q 003801 672 NDAFSQFSAVDFAKRGSGNGDKIEDIELSEEEMEMYVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNG 751 (794)
Q Consensus 672 ~~~~~~~~~~d~~~~~~~~~~~i~di~~~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~ 751 (794)
..+++++|. +|++|++++++.++++.|++.+.+..+|+|+ .
T Consensus 254 -----------------------------------~~~l~~~~~-~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE---~ 294 (408)
T TIGR03520 254 -----------------------------------NFDWQSLLR-EPYFVPENKKLDDLLRDFQEKKNHLAIVVDE---Y 294 (408)
T ss_pred -----------------------------------CCCHHHHcC-CCeEeCCCCcHHHHHHHHHhcCceEEEEEcC---C
Confidence 123456664 5789999999999999999999999999998 8
Q ss_pred CcEEEEEecccccHHHHHhcCc
Q 003801 752 SPVMGILTRHDFMPEHILALNP 773 (794)
Q Consensus 752 g~vvGIITr~Dll~~~~~~~~~ 773 (794)
|.++||||.+|++++...+...
T Consensus 295 G~~~GiVT~eDileeivgei~d 316 (408)
T TIGR03520 295 GGTSGLVTLEDIIEEIVGDISD 316 (408)
T ss_pred CCEEEEEEHHHHHHHHhCCCCC
Confidence 9999999999999998776543
No 38
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.36 E-value=4.9e-12 Score=113.46 Aligned_cols=95 Identities=19% Similarity=0.231 Sum_probs=83.7
Q ss_pred ceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCCCCCcccccchhhhhhc
Q 003801 606 PLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNPTVNDAFSQFSAVDFAK 685 (794)
Q Consensus 606 ~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~d~~~ 685 (794)
.++++++++++.++.+.|.+++++++||+|++ +++++|+|+.+|+.+.+
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~----~~~~~Givt~~Dl~~~~--------------------------- 50 (98)
T cd04618 2 KLVVFDTKLPVKKAFNALVENGIRSAPLWDSR----KQQFVGMLTITDFILIL--------------------------- 50 (98)
T ss_pred eEEEECCCCcHHHHHHHHHHcCCceEEEEeCC----CCEEEEEEEHHHHhhhe---------------------------
Confidence 46789999999999999999999999999963 16899999999994321
Q ss_pred cCCCCCCCccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCC-CcEEEEEeccccc
Q 003801 686 RGSGNGDKIEDIELSEEEMEMYVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNG-SPVMGILTRHDFM 764 (794)
Q Consensus 686 ~~~~~~~~i~di~~~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~-g~vvGIITr~Dll 764 (794)
. +.++.+++++.++.++|.+.+.+++||+|+ + |+++|+||++|++
T Consensus 51 -----------------------------~--~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~~~~~~giit~~d~~ 96 (98)
T cd04618 51 -----------------------------R--LVSIHPERSLFDAALLLLKNKIHRLPVIDP---STGTGLYILTSRRIL 96 (98)
T ss_pred -----------------------------e--eEEeCCCCcHHHHHHHHHHCCCCEeeEEEC---CCCCceEEeehhhhh
Confidence 0 568999999999999999999999999997 5 8999999999987
Q ss_pred H
Q 003801 765 P 765 (794)
Q Consensus 765 ~ 765 (794)
+
T Consensus 97 ~ 97 (98)
T cd04618 97 K 97 (98)
T ss_pred c
Confidence 5
No 39
>cd01031 EriC ClC chloride channel EriC. This domain is found in the EriC chloride transporters that mediate the extreme acid resistance response in eubacteria and archaea. This response allows bacteria to survive in the acidic environments by decarboxylation-linked proton utilization. As shown for Escherichia coli EriC, these channels can counterbalance the electric current produced by the outwardly directed virtual proton pump linked to amino acid decarboxylation. The EriC proteins belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge. In Escherichia coli EriC, a glutamate residue that protrudes into the pore is thought to participate in gating by binding to a Cl- ion site within the selectivity filter.
Probab=99.36 E-value=1.1e-11 Score=139.68 Aligned_cols=184 Identities=22% Similarity=0.239 Sum_probs=130.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHhhcccccCCCHHHH
Q 003801 96 KWSLCFLIGLIVGLIGFLNNLAVENIAGTKFVVTSNMMLANKFGMAFLSFSIPNLVLTLFASIVTATVAPVAAGSGIPEV 175 (794)
Q Consensus 96 ~w~~~~liGv~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~p~a~GsGipev 175 (794)
.+...+++|+++|+++.+|+..++++++++.... ....++.. ++.+++.+.+ .++.|+..|+|.+.+
T Consensus 206 ~l~~~illGv~~G~~g~~f~~~~~~~~~~~~~~~--------~~~~~~~~----~l~gl~~~~~-~~~~p~~~g~G~~~i 272 (402)
T cd01031 206 SYWLLLLLGIIAGLLGYLFNRSLLKSQDLYRKLK--------KLPRELRV----LLPGLLIGPL-GLLLPEALGGGHGLI 272 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------cCChhHHH----HHHHHHHHHH-HHHHHHHhCCHHHHH
Confidence 4557889999999999999999888776543210 01112221 2333444433 345799999998888
Q ss_pred HHHHcCCCCCCcchhHHHHHHHHHHHhhhccccccCCchhHHHHHHHHHHHhhccCccccccchhhhcccCChhhhhhHH
Q 003801 176 KAYLNGVDAPGILSFRTLVIKIIGSISAVSSSLLVGKAGPMVHTGACVASLLGQGGSKKYGLTWKWLRFFKNDRDRRDFV 255 (794)
Q Consensus 176 ~~~lng~~~~~~~~~~tl~~K~~~~~~sv~sGlsvG~EGP~vhiGa~igs~l~~~~s~~~~l~~~~l~~f~~~~~~r~lv 255 (794)
+..+++. .+-..-...++.|++.+.+++++|.+.|...|.+.+||++|..+++. ++. +++ .+..+...++
T Consensus 273 ~~~~~~~-~~~~~l~~~~~~K~~~t~lt~~~G~~GG~f~Psl~iGa~~G~~~g~~----~~~---~~~--~~~~~~~~~a 342 (402)
T cd01031 273 LSLAGGN-FSISLLLLIFVLRFIFTMLSYGSGAPGGIFAPMLALGALLGLLFGTI----LVQ---LGP--IPISAPATFA 342 (402)
T ss_pred HHHHcCC-chHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHH----HHH---hcC--cccccHHHHH
Confidence 8877652 12111223567999999999999999999999999999999999872 211 111 1345778999
Q ss_pred HHhhhhhhhhhhcccchhHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHH
Q 003801 256 TCGSAAGIAAAFRAPVGGLLFAIEEMASWWRSALLWRAFFTTAIVAILLR 305 (794)
Q Consensus 256 ~~GaaAGvaaaF~APigGvLFalE~~~~~~~~~~~~~~f~~~~va~~v~~ 305 (794)
.+|+||.+++++|+|++++++++|...++ ..+.+.++++++|..+.+
T Consensus 343 ~~G~aa~~a~~~~aPlta~vl~~Eltg~~---~~l~p~~ia~~ia~~v~~ 389 (402)
T cd01031 343 IAGMAAFFAAVVRAPITAIILVTEMTGNF---NLLLPLMVVCLVAYLVAD 389 (402)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhCCH---hHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999977642 445555555555555544
No 40
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.34 E-value=7.4e-12 Score=116.38 Aligned_cols=122 Identities=17% Similarity=0.249 Sum_probs=97.2
Q ss_pred cceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCCCCCcccccchhhhhh
Q 003801 605 APLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNPTVNDAFSQFSAVDFA 684 (794)
Q Consensus 605 ~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~d~~ 684 (794)
+++.++++++++.++.+.|.+.+++.+||+|++ ++++|+|+.+|+...+........ ..+.
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~-----~~~~Giv~~~~l~~~~~~~~~~~~--------------~~~~ 62 (124)
T cd04600 2 RDVVTVTPDTSLEEAWALLRRHRIKALPVVDGD-----RRLVGIVTQRDLLRHARPDGRRPL--------------RGRL 62 (124)
T ss_pred CCcEEeCCCCCHHHHHHHHHHcCCceeeEECCC-----CCEEEEEEHHHHHhhhcccccchh--------------hhhh
Confidence 567889999999999999999999999999986 899999999999765432110000 0000
Q ss_pred ccCCCCCCCccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCcEEEEEeccccc
Q 003801 685 KRGSGNGDKIEDIELSEEEMEMYVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHDFM 764 (794)
Q Consensus 685 ~~~~~~~~~i~di~~~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~vvGIITr~Dll 764 (794)
+ ......++.++|++.+.++++++++.+++++|.+.+.+.+||+|+ +|+++|+||++|++
T Consensus 63 ~-----------------~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~---~g~~~Gvit~~di~ 122 (124)
T cd04600 63 R-----------------GRDKPETVGDIMSPPVVTVRPDTPIAELVPLLADGGHHHVPVVDE---DRRLVGIVTQTDLI 122 (124)
T ss_pred h-----------------cccccccHHHhccCCCeeeCCCCcHHHHHHHHHhcCCCceeEEcC---CCCEEEEEEhHHhh
Confidence 0 001234567889899999999999999999999999999999997 78999999999997
Q ss_pred H
Q 003801 765 P 765 (794)
Q Consensus 765 ~ 765 (794)
+
T Consensus 123 ~ 123 (124)
T cd04600 123 A 123 (124)
T ss_pred c
Confidence 5
No 41
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=99.33 E-value=1e-11 Score=113.99 Aligned_cols=111 Identities=24% Similarity=0.317 Sum_probs=93.1
Q ss_pred ceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCCCCCcccccchhhhhhc
Q 003801 606 PLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNPTVNDAFSQFSAVDFAK 685 (794)
Q Consensus 606 ~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~d~~~ 685 (794)
++.++++++++.++.+.|.+.+++.+||+|++ ++++|+++.+|+...+.+....
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~-----~~~~G~v~~~dl~~~~~~~~~~--------------------- 55 (115)
T cd04593 2 PPPVLSATTPLREAAEQLIESKHGSALVVDRD-----GGVVGIITLPDLLRALEADEAG--------------------- 55 (115)
T ss_pred CCcEeCCCCCHHHHHHHHHhCCCcEEEEEcCC-----CCEEEEEEHHHHHHHHhccccc---------------------
Confidence 56688999999999999999999999999987 8999999999997755321100
Q ss_pred cCCCCCCCccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCC--CcEEEEEecccc
Q 003801 686 RGSGNGDKIEDIELSEEEMEMYVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNG--SPVMGILTRHDF 763 (794)
Q Consensus 686 ~~~~~~~~i~di~~~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~--g~vvGIITr~Dl 763 (794)
....+.++|.+++.++.+++++.+++++|.+.+.+++||+|+ + |+++|+||++|+
T Consensus 56 --------------------~~~~~~~~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~Vvd~---~~~~~~~Gvit~~di 112 (115)
T cd04593 56 --------------------EPSAVDEVATPPLLTVHPDEPLAHALDRMASRGLRQLPVVDR---GNPGQVLGLLTRENV 112 (115)
T ss_pred --------------------ccccHHHhccCCceEECCCCCHHHHHHHHHHcCCceeeEEeC---CCCCeEEEEEEhHHh
Confidence 011245677788999999999999999999999999999987 4 789999999999
Q ss_pred cH
Q 003801 764 MP 765 (794)
Q Consensus 764 l~ 765 (794)
++
T Consensus 113 ~~ 114 (115)
T cd04593 113 LL 114 (115)
T ss_pred hc
Confidence 75
No 42
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.33 E-value=1.3e-11 Score=114.14 Aligned_cols=114 Identities=19% Similarity=0.185 Sum_probs=91.1
Q ss_pred ceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCCCCCcccccchhhhhhc
Q 003801 606 PLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNPTVNDAFSQFSAVDFAK 685 (794)
Q Consensus 606 ~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~d~~~ 685 (794)
++.++++++++.++.+.|..++.+.+||+|++ ++++|+|+..|+......+. +.
T Consensus 2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~-----~~~~Givt~~dl~~~~~~~~---~~------------------ 55 (118)
T cd04617 2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDED-----GDLVGVVSRKDLLKASIGGA---DL------------------ 55 (118)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCC-----CCEEEEEEHHHHHHHHHcCC---Cc------------------
Confidence 56789999999999999998888999999987 78999999999977543211 00
Q ss_pred cCCCCCCCccccccchhhhhccccccccccc--CCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCcEEEEEecccc
Q 003801 686 RGSGNGDKIEDIELSEEEMEMYVDLHPFANA--SPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHDF 763 (794)
Q Consensus 686 ~~~~~~~~i~di~~~~~~~~~~idl~~im~~--~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~vvGIITr~Dl 763 (794)
....+.++|.+ .+.++++++++.++.++|.+.+.+++||+|+..+.++++|+||++|+
T Consensus 56 --------------------~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l 115 (118)
T cd04617 56 --------------------QKVPVGVIMTRMPNITTTTPEESVLEAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNI 115 (118)
T ss_pred --------------------cCCCHHHHhCCCCCcEEECCCCcHHHHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhhe
Confidence 01123456654 67799999999999999999999999999971001689999999999
Q ss_pred cH
Q 003801 764 MP 765 (794)
Q Consensus 764 l~ 765 (794)
++
T Consensus 116 ~~ 117 (118)
T cd04617 116 TK 117 (118)
T ss_pred ec
Confidence 75
No 43
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.32 E-value=7.1e-12 Score=143.24 Aligned_cols=160 Identities=16% Similarity=0.179 Sum_probs=117.2
Q ss_pred chHHHHHHHHcCCCcccccc--ccccc-cceeccccc---cceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCe
Q 003801 571 GNIYDLIMKAKGFPYLETHV--EPYMR-QLTVGDVVT---APLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPI 644 (794)
Q Consensus 571 ~~iy~~~l~~~g~p~l~~~~--~~~l~-~l~v~diM~---~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~ 644 (794)
..+--.+.+.+|+++++... +...+ -.+++++|. .+..++++++++.++++.|.+++++.+||+|++ .++++
T Consensus 65 dalAiala~~gG~g~Ih~n~sie~qa~lV~kVk~~~~g~i~~~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~--~~~gk 142 (502)
T PRK07107 65 DNMAIALAREGGLSFIFGSQSIESEAAMVRRVKNYKAGFVVSDSNLTPDNTLADVLDLKEKTGHSTVAVTEDG--TAHGK 142 (502)
T ss_pred HHHHHHHHHcCCCeEeeCCCCHHHHHHHHHHHHHHhcCCcCCCCEeCCCCcHHHHHHHHHhcCCCeEEEEeCC--CcCCE
Confidence 45556667778888755321 11111 235777775 344689999999999999999999999999962 01279
Q ss_pred EEEEEeHHHHHHHHHhccCCCCCCCCCCcccccchhhhhhccCCCCCCCccccccchhhhhccccccccccc--CCceec
Q 003801 645 LYGLILRAHLITLLKKKAFLPTPNPTVNDAFSQFSAVDFAKRGSGNGDKIEDIELSEEEMEMYVDLHPFANA--SPYTVV 722 (794)
Q Consensus 645 l~GiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~di~~~~~~~~~~idl~~im~~--~p~tV~ 722 (794)
++|+|+..|+.... . . ....++++|++ ++++++
T Consensus 143 LvGIVT~~DLr~~~---~---~---------------------------------------~~~~V~dIMt~~~~~itv~ 177 (502)
T PRK07107 143 LLGIVTSRDYRISR---M---S---------------------------------------LDTKVKDFMTPFEKLVTAN 177 (502)
T ss_pred EEEEEEcHHhhccc---c---C---------------------------------------CCCCHHHHhCCCCCeEEEC
Confidence 99999999984210 0 0 01235678876 678899
Q ss_pred CCCCHHHHHHHHHHcCCCEEEEeecCCCCCcEEEEEecccccHHHHHhcCccccccccccc
Q 003801 723 ETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHDFMPEHILALNPLLARSRWKRL 783 (794)
Q Consensus 723 ~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~vvGIITr~Dll~~~~~~~~~~l~~~~~~~~ 783 (794)
+++++.+|+++|.+++++++||+|+ +++++|+||++|+++.. .+|...+.+.+++
T Consensus 178 ~d~~l~eAl~lM~e~~i~~LPVVD~---~g~LvGIIT~~Dilk~~---~~P~a~~d~~grL 232 (502)
T PRK07107 178 EGTTLKEANDIIWDHKLNTLPIVDK---NGNLVYLVFRKDYDSHK---ENPLELLDSSKRY 232 (502)
T ss_pred CCCcHHHHHHHHHHcCCCEEEEEcC---CCeEEEEEEhHHHHhcc---cChhhhhhhccCe
Confidence 9999999999999999999999997 78999999999999843 3555444433333
No 44
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.31 E-value=1.3e-11 Score=112.27 Aligned_cols=109 Identities=21% Similarity=0.313 Sum_probs=92.7
Q ss_pred ceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCCCCCcccccchhhhhhc
Q 003801 606 PLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNPTVNDAFSQFSAVDFAK 685 (794)
Q Consensus 606 ~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~d~~~ 685 (794)
++.+++++++++++.+.+.+.+++.+||+|++ ++++|+|+..++.+.+.... .
T Consensus 2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~~-----~~~~G~v~~~~l~~~~~~~~----~------------------ 54 (111)
T cd04639 2 HFETLSPADTLDDAADALLATTQHEFPVVDGD-----GHLVGLLTRDDLIRALAEGG----P------------------ 54 (111)
T ss_pred CceEcCCCCcHHHHHHHHHHcCCCcceEECCC-----CcEEEEeeHHHHHHHHHhcC----C------------------
Confidence 45678999999999999998889999999986 79999999999977554211 0
Q ss_pred cCCCCCCCccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCcEEEEEecccccH
Q 003801 686 RGSGNGDKIEDIELSEEEMEMYVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHDFMP 765 (794)
Q Consensus 686 ~~~~~~~~i~di~~~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~vvGIITr~Dll~ 765 (794)
..++.++|+.++.++++++++.++.++|.+.+.+++||+|+ +++++|+||++|+.+
T Consensus 55 ---------------------~~~v~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~---~~~~~G~it~~dl~~ 110 (111)
T cd04639 55 ---------------------DAPVRGVMRRDFPTVSPSATLDAVLRLMQQGGAPAVPVVDG---SGRLVGLVTLENVGE 110 (111)
T ss_pred ---------------------CCcHHHHhcCCCcEECCCCcHHHHHHHHHhcCCceeeEEcC---CCCEEEEEEHHHhhc
Confidence 01245677788899999999999999999999999999987 689999999999975
No 45
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.31 E-value=1.9e-11 Score=111.08 Aligned_cols=108 Identities=16% Similarity=0.229 Sum_probs=92.7
Q ss_pred cceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCCCCCcccccchhhhhh
Q 003801 605 APLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNPTVNDAFSQFSAVDFA 684 (794)
Q Consensus 605 ~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~d~~ 684 (794)
+++.++++++++.++.+.+.+++++.+||+|++ ++++|+++.++++..+....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~-----~~~~G~v~~~~l~~~~~~~~---------------------- 54 (110)
T cd04605 2 RPVVTISEDASIKEAAKLMIEENINHLPVVDED-----GRLVGIVTSWDISKAVARDK---------------------- 54 (110)
T ss_pred CCCEEECCCCCHHHHHHHHHhCCCceEEEECCC-----CcEEEEEeHHHHHHHHhhCc----------------------
Confidence 467789999999999999999999999999986 89999999999976443210
Q ss_pred ccCCCCCCCccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCcEEEEEeccccc
Q 003801 685 KRGSGNGDKIEDIELSEEEMEMYVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHDFM 764 (794)
Q Consensus 685 ~~~~~~~~~i~di~~~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~vvGIITr~Dll 764 (794)
.++.++|.+++.++++++++.+++++|.+.+.+.+||+++ +|+++|+||++|++
T Consensus 55 -----------------------~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~---~~~~~G~v~~~di~ 108 (110)
T cd04605 55 -----------------------KSVEDIMTRNVITATPDEPIDVAARKMERHNISALPVVDA---ENRVIGIITSEDIS 108 (110)
T ss_pred -----------------------cCHHHhcCCCCeEECCCCcHHHHHHHHHHhCCCEEeEECC---CCcEEEEEEHHHhh
Confidence 1245567778889999999999999999999999999997 78999999999986
Q ss_pred H
Q 003801 765 P 765 (794)
Q Consensus 765 ~ 765 (794)
+
T Consensus 109 ~ 109 (110)
T cd04605 109 K 109 (110)
T ss_pred h
Confidence 4
No 46
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=99.30 E-value=9.3e-12 Score=116.60 Aligned_cols=113 Identities=14% Similarity=0.147 Sum_probs=93.5
Q ss_pred cceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCCCCCcccccchhhhhh
Q 003801 605 APLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNPTVNDAFSQFSAVDFA 684 (794)
Q Consensus 605 ~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~d~~ 684 (794)
+++.++++++++.++.+.|+++++..+||+|++ ++++|+|+.+|+...+......
T Consensus 2 ~~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~-----~~~~Gii~~~dl~~~~~~~~~~-------------------- 56 (124)
T cd04608 2 KAPVTVLPTVTCAEAIEILKEKGFDQLPVVDES-----GKILGMVTLGNLLSSLSSGKVQ-------------------- 56 (124)
T ss_pred CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCC-----CCEEEEEEHHHHHHHHHHhccC--------------------
Confidence 467789999999999999999999999999987 7999999999997655432210
Q ss_pred ccCCCCCCCccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHH---------cCCCEEEEeecCCCCCcEE
Q 003801 685 KRGSGNGDKIEDIELSEEEMEMYVDLHPFANASPYTVVETMSLAKALILFRE---------VGLRHLLVIPKISNGSPVM 755 (794)
Q Consensus 685 ~~~~~~~~~i~di~~~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~---------~glr~LpVVd~~~~~g~vv 755 (794)
....+.++|++++.++.+++++.++.+++.. .+.+++||+|+ +|+++
T Consensus 57 ---------------------~~~~v~~im~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~---~~~~~ 112 (124)
T cd04608 57 ---------------------PSDPVSKALYKQFKRVNKNDTLGKLSRILETDAFLLVFFEQISSAAIGKEK---QEKPI 112 (124)
T ss_pred ---------------------CCCcHHHHhhccceecCCCCCHHHHHhhcccCCceEEEecccccccccccc---ccceE
Confidence 1134678899999999999999999996532 36788999987 78999
Q ss_pred EEEecccccHH
Q 003801 756 GILTRHDFMPE 766 (794)
Q Consensus 756 GIITr~Dll~~ 766 (794)
||||+.|++++
T Consensus 113 Givt~~Dl~~~ 123 (124)
T cd04608 113 GIVTKIDLLSY 123 (124)
T ss_pred EEEehhHhhhh
Confidence 99999999874
No 47
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.29 E-value=1.3e-11 Score=112.06 Aligned_cols=105 Identities=19% Similarity=0.304 Sum_probs=91.2
Q ss_pred ceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCCCCCcccccchhhhhhc
Q 003801 606 PLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNPTVNDAFSQFSAVDFAK 685 (794)
Q Consensus 606 ~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~d~~~ 685 (794)
++.++++++++.++.+.|.+++++.+||+|++ ++++|+|+.+++.....
T Consensus 3 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~-----~~~~G~v~~~~l~~~~~-------------------------- 51 (108)
T cd04596 3 DTGYLTTTDTVKDWHELNKETGHSRFPVVDEK-----NKVVGIVTSKDVAGKDP-------------------------- 51 (108)
T ss_pred ccEEeCCCCCHHHHHHHHHHcCCCceeEECCC-----CeEEEEecHHHHhcccc--------------------------
Confidence 56789999999999999999999999999987 89999999999953100
Q ss_pred cCCCCCCCccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCcEEEEEecccccH
Q 003801 686 RGSGNGDKIEDIELSEEEMEMYVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHDFMP 765 (794)
Q Consensus 686 ~~~~~~~~i~di~~~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~vvGIITr~Dll~ 765 (794)
..++.++|++.+.++++++++.++.++|.+.+.+.+||+|+ +|+++|+||++|+++
T Consensus 52 ---------------------~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~---~~~~~G~it~~di~~ 107 (108)
T cd04596 52 ---------------------DTTIEKVMTKNPITVNPKTSVASVAHMMIWEGIEMLPVVDD---NKKLLGIISRQDVLK 107 (108)
T ss_pred ---------------------cccHHHHhcCCCeEECCCCCHHHHHHHHHHcCCCeeeEEcC---CCCEEEEEEHHHhhc
Confidence 01355677778889999999999999999999999999997 789999999999875
No 48
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.29 E-value=2.8e-11 Score=110.91 Aligned_cols=109 Identities=22% Similarity=0.264 Sum_probs=88.4
Q ss_pred ceeEEeccccHHHHHHHHhcCC-CCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCCCCCcccccchhhhhh
Q 003801 606 PLQLFHGIEKAGNVVHVLRTTR-HNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNPTVNDAFSQFSAVDFA 684 (794)
Q Consensus 606 ~vv~l~~~~sv~~a~~~L~~~~-~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~d~~ 684 (794)
++.++++++++.++.+.|.+.+ ...+||+|++ ++++|+|+.+|++....+.. .
T Consensus 2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~~-----~~~~G~v~~~dl~~~~~~~~-~-------------------- 55 (114)
T cd04801 2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVDNE-----GRYVGIISLADLRAIPTSQW-A-------------------- 55 (114)
T ss_pred CcceeCCCCCHHHHHHHHhccCCceeEEEEcCC-----CcEEEEEEHHHHHHHHHhhc-c--------------------
Confidence 5678999999999999987664 7899999987 89999999999976543211 0
Q ss_pred ccCCCCCCCccccccchhhhhccccccccccc--CCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCcEEEEEeccc
Q 003801 685 KRGSGNGDKIEDIELSEEEMEMYVDLHPFANA--SPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHD 762 (794)
Q Consensus 685 ~~~~~~~~~i~di~~~~~~~~~~idl~~im~~--~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~vvGIITr~D 762 (794)
...+.++|++ .+.++.+++++.++++.|++.+.+++||+|+ +++++|+||++|
T Consensus 56 ----------------------~~~v~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~~---~~~~~Gvl~~~d 110 (114)
T cd04801 56 ----------------------QTTVIQVMTPAAKLVTVLSEESLAEVLKLLEEQGLDELAVVED---SGQVIGLITEAD 110 (114)
T ss_pred ----------------------ccchhhhhcccccceEECCCCcHHHHHHHHHHCCCCeeEEEcC---CCcEEEEEeccc
Confidence 0123455543 2568999999999999999999999999997 689999999999
Q ss_pred ccH
Q 003801 763 FMP 765 (794)
Q Consensus 763 ll~ 765 (794)
+++
T Consensus 111 i~~ 113 (114)
T cd04801 111 LLR 113 (114)
T ss_pred eec
Confidence 975
No 49
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.29 E-value=2.1e-11 Score=113.02 Aligned_cols=120 Identities=21% Similarity=0.282 Sum_probs=96.1
Q ss_pred ceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCCCCCcccccchhhhhhc
Q 003801 606 PLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNPTVNDAFSQFSAVDFAK 685 (794)
Q Consensus 606 ~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~d~~~ 685 (794)
++.++.+++++.++.+.|.+.+++.+||+|++ ++++|+++.+|+...+......... +..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~-----~~~~G~v~~~~l~~~~~~~~~~~~~--------------~~~- 61 (122)
T cd04803 2 PVVTLSEDDSLADAEELMREHRIRHLPVVNED-----GKLVGLLTQRDLLRAALSSLSDNGE--------------ESL- 61 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCcccccEECCC-----CCEEEEEEHHHHHHHhccccccccc--------------ccc-
Confidence 56788999999999999999999999999986 8999999999997755321100000 000
Q ss_pred cCCCCCCCccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCcEEEEEecccccH
Q 003801 686 RGSGNGDKIEDIELSEEEMEMYVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHDFMP 765 (794)
Q Consensus 686 ~~~~~~~~i~di~~~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~vvGIITr~Dll~ 765 (794)
+.....++.++|++++.++++++++.++++.|.+.+.+.+||+|+ +|+++|+||++|+++
T Consensus 62 -----------------~~~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~---~~~~~Gvit~~dl~~ 121 (122)
T cd04803 62 -----------------TKERDVPVAEVMKTDVLTVTPDTPLREAAEIMVENKIGCLPVVDD---KGTLVGIITRSDFLR 121 (122)
T ss_pred -----------------ccccCcCHHHhhCCCCeEeCCCCcHHHHHHHHHHcCCCeEEEEcC---CCCEEEEEEHHHhhc
Confidence 001234567888889999999999999999999999999999997 689999999999975
No 50
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.29 E-value=3e-11 Score=110.14 Aligned_cols=110 Identities=16% Similarity=0.266 Sum_probs=93.3
Q ss_pred ceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCCCCCcccccchhhhhhc
Q 003801 606 PLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNPTVNDAFSQFSAVDFAK 685 (794)
Q Consensus 606 ~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~d~~~ 685 (794)
++.++++++++.++.+.|.+.+++.+||+|++ ++++|+|+.+|++..+.....
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~-----~~~~G~v~~~~l~~~~~~~~~---------------------- 54 (112)
T cd04624 2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDPD-----ERPIGIVTERDIVRAVAAGID---------------------- 54 (112)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCEEEEECCC-----CCEEEEeeHHHHHHHHhccCC----------------------
Confidence 45678999999999999998899999999987 899999999999775543110
Q ss_pred cCCCCCCCccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCcEEEEEecccccH
Q 003801 686 RGSGNGDKIEDIELSEEEMEMYVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHDFMP 765 (794)
Q Consensus 686 ~~~~~~~~i~di~~~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~vvGIITr~Dll~ 765 (794)
...++.++|++++.++.+++++.++.+.|.+.+...+||+|+ +|+++|+||++|+++
T Consensus 55 --------------------~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~---~g~~~Gilt~~dl~~ 111 (112)
T cd04624 55 --------------------LDTPVSEIMTRDLVTVDPDEPVAEAAKLMRKNNIRHHLVVDK---GGELVGVISIRDLVR 111 (112)
T ss_pred --------------------CccCHHHhccCCCEEECCCCcHHHHHHHHHHcCccEEEEEcC---CCcEEEEEEHHHhcc
Confidence 012345677888999999999999999999999999999997 789999999999985
No 51
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.28 E-value=1.4e-11 Score=116.78 Aligned_cols=133 Identities=17% Similarity=0.239 Sum_probs=96.7
Q ss_pred cceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCCCCCcccccchhhhhh
Q 003801 605 APLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNPTVNDAFSQFSAVDFA 684 (794)
Q Consensus 605 ~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~d~~ 684 (794)
+++.++++++++.++.+.|.+++++.+||+|++ ++++|+|+++|+...+.... .... -.+.+..
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~-----~~~~Gvi~~~dl~~~~~~~~-~~~~----------~~~~~~~ 65 (135)
T cd04586 2 TDVVTVSPETSVAEAARLMLDNHISGLPVVDDD-----GRLVGIVSEGDLLRRAELGT-ERRR----------ARWLDLL 65 (135)
T ss_pred CCCEEeCCCCCHHHHHHHHHHcCCCCceEECCC-----CCEEEEeeHHHHHHHhcccC-cchh----------hhHHHHh
Confidence 567889999999999999999999999999986 89999999999976543211 0000 0000000
Q ss_pred ccCCCCCCCccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCcEEEEEeccccc
Q 003801 685 KRGSGNGDKIEDIELSEEEMEMYVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHDFM 764 (794)
Q Consensus 685 ~~~~~~~~~i~di~~~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~vvGIITr~Dll 764 (794)
.. .++.. .+.......++.++|++++.++.+++++.+++++|++.+.+++||+| +|+++|+||++|++
T Consensus 66 ~~-------~~~~~-~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd----~g~~~Gvit~~di~ 133 (135)
T cd04586 66 AG-------AEELA-AAFVRSHGRKVADVMTRPVVTVGEDTPLAEVAELMEEHRIKRVPVVR----GGRLVGIVSRADLL 133 (135)
T ss_pred cc-------hHHHH-HHHHHhcCCCHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCccCEec----CCEEEEEEEhHhhh
Confidence 00 00000 00000123467888989999999999999999999999999999998 47899999999987
Q ss_pred H
Q 003801 765 P 765 (794)
Q Consensus 765 ~ 765 (794)
+
T Consensus 134 ~ 134 (135)
T cd04586 134 R 134 (135)
T ss_pred c
Confidence 5
No 52
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.28 E-value=3.9e-11 Score=109.78 Aligned_cols=109 Identities=22% Similarity=0.238 Sum_probs=91.7
Q ss_pred eeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCCCCCcccccchhhhhhcc
Q 003801 607 LQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNPTVNDAFSQFSAVDFAKR 686 (794)
Q Consensus 607 vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 686 (794)
..++++++++.++.+.|.+.++..+||+|++ ++++|+++.+|+...+.+..-
T Consensus 4 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~-----~~~~G~v~~~dl~~~~~~~~~----------------------- 55 (113)
T cd04607 4 QLLVSPDASILDALRKIDKNALRIVLVVDEN-----GRLLGTVTDGDIRRALLKGLS----------------------- 55 (113)
T ss_pred ceEECCCCCHHHHHHHHHhcCcCEEEEECCC-----CCEEEEEEcHHHHHHHhcCCC-----------------------
Confidence 4578999999999999998888999999987 899999999999765432110
Q ss_pred CCCCCCCccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCcEEEEEecccccH
Q 003801 687 GSGNGDKIEDIELSEEEMEMYVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHDFMP 765 (794)
Q Consensus 687 ~~~~~~~i~di~~~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~vvGIITr~Dll~ 765 (794)
....+.++|++.+.++++++++.+++++|.+.+.+++||+|+ +++++|+||++|++.
T Consensus 56 -------------------~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~---~~~~~Gvit~~di~~ 112 (113)
T cd04607 56 -------------------LDDPVSEVMNRNPITAKVGSSREEILALMRERSIRHLPILDE---EGRVVGLATLDDLLS 112 (113)
T ss_pred -------------------cCCCHHHhhcCCCEEEcCCCCHHHHHHHHHHCCCCEEEEECC---CCCEEEEEEhHHhcc
Confidence 011345677788889999999999999999999999999997 789999999999974
No 53
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.28 E-value=3.5e-11 Score=110.31 Aligned_cols=112 Identities=13% Similarity=0.246 Sum_probs=91.9
Q ss_pred ceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCCCCCcccccchhhhhhc
Q 003801 606 PLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNPTVNDAFSQFSAVDFAK 685 (794)
Q Consensus 606 ~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~d~~~ 685 (794)
++.++++++++.++++.|++.+++.+||+|++ .++++|+++.+|+++.+.+.....
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~----~~~~~G~v~~~dl~~~~~~~~~~~-------------------- 57 (114)
T cd04630 2 NVVTIDGLATVAEALQLMKEHGVSSLVVEKRR----ESDAYGIVTMRDILKKVVAEGRDP-------------------- 57 (114)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCEEEEEECC----CCcEEEEEehHHHHHHHHhCCCCC--------------------
Confidence 56789999999999999998899999999862 168999999999987554311000
Q ss_pred cCCCCCCCccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCcEEEEEecccccH
Q 003801 686 RGSGNGDKIEDIELSEEEMEMYVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHDFMP 765 (794)
Q Consensus 686 ~~~~~~~~i~di~~~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~vvGIITr~Dll~ 765 (794)
....+.++|++++.++++++++.+++++|.+.+.+++||+|+ |+++|+||++|+++
T Consensus 58 --------------------~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~----~~~~Gvi~~~dl~~ 113 (114)
T cd04630 58 --------------------DRVNVYEIMTKPLISVSPDMDIKYCARLMERTNIRRAPVVEN----NELIGIISLTDIFL 113 (114)
T ss_pred --------------------CccCHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCEeeEeeC----CEEEEEEEHHHhhc
Confidence 012355677788889999999999999999999999999984 78999999999875
No 54
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.28 E-value=3.8e-11 Score=109.34 Aligned_cols=111 Identities=14% Similarity=0.225 Sum_probs=92.7
Q ss_pred ceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCCCCCcccccchhhhhhc
Q 003801 606 PLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNPTVNDAFSQFSAVDFAK 685 (794)
Q Consensus 606 ~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~d~~~ 685 (794)
++.++++++++.++.+.|.+.+++.+||+|++ ++++|+++.+|+...+......
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~~-----~~~~Giv~~~~l~~~~~~~~~~--------------------- 55 (113)
T cd04623 2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDDG-----GRLVGIFSERDIVRKVALRGAS--------------------- 55 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEECCC-----CCEEEEEehHHHHHHHhhcCCC---------------------
Confidence 46778999999999999999999999999986 7999999999997755421100
Q ss_pred cCCCCCCCccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCcEEEEEecccccH
Q 003801 686 RGSGNGDKIEDIELSEEEMEMYVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHDFMP 765 (794)
Q Consensus 686 ~~~~~~~~i~di~~~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~vvGIITr~Dll~ 765 (794)
....+++++|++++.++.+++++.+++++|.+.+.+++||+|+ ++++|+||++|+++
T Consensus 56 -------------------~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~Vv~~----~~~~Gvit~~di~~ 112 (113)
T cd04623 56 -------------------ALDTPVSEIMTRNVITVTPDDTVDEAMALMTERRFRHLPVVDG----GKLVGIVSIGDVVK 112 (113)
T ss_pred -------------------ccccCHHHhcCCCcEEECCCCcHHHHHHHHHHcCCCEeEEEeC----CEEEEEEEHHHhhc
Confidence 0012356778788899999999999999999999999999984 78999999999975
No 55
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.27 E-value=2.8e-11 Score=107.97 Aligned_cols=94 Identities=16% Similarity=0.312 Sum_probs=83.9
Q ss_pred ceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCCCCCcccccchhhhhhc
Q 003801 606 PLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNPTVNDAFSQFSAVDFAK 685 (794)
Q Consensus 606 ~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~d~~~ 685 (794)
+++++++++++.++.+.|.+++...+||+|++ ++++|+++.+|+...
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~-----~~~~Giv~~~dl~~~---------------------------- 48 (96)
T cd04614 2 NVPTVWEETPLPVAVRIMELANVKALPVLDDD-----GKLSGIITERDLIAK---------------------------- 48 (96)
T ss_pred CccEeCCCCcHHHHHHHHHHcCCCeEEEECCC-----CCEEEEEEHHHHhcC----------------------------
Confidence 56789999999999999998999999999986 899999999999431
Q ss_pred cCCCCCCCccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCcEEEEEecccccH
Q 003801 686 RGSGNGDKIEDIELSEEEMEMYVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHDFMP 765 (794)
Q Consensus 686 ~~~~~~~~i~di~~~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~vvGIITr~Dll~ 765 (794)
..+.++++++++.++.++|.+.+.+++||+|+ +|+++|+||++|+++
T Consensus 49 ------------------------------~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~---~~~~~Giit~~di~~ 95 (96)
T cd04614 49 ------------------------------SEVVTATKRTTVSECAQKMKRNRIEQIPIING---NDKLIGLLRDHDLLK 95 (96)
T ss_pred ------------------------------CCcEEecCCCCHHHHHHHHHHhCCCeeeEECC---CCcEEEEEEHHHhhc
Confidence 01568999999999999999999999999997 689999999999975
No 56
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.27 E-value=2.2e-11 Score=111.29 Aligned_cols=112 Identities=17% Similarity=0.216 Sum_probs=92.3
Q ss_pred ceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCCCCCcccccchhhhhhc
Q 003801 606 PLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNPTVNDAFSQFSAVDFAK 685 (794)
Q Consensus 606 ~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~d~~~ 685 (794)
++.++++++++.++.+.|.+++.+.+||+|++ ++++|+|+.+++.+.+....+...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~-----~~~~G~v~~~~l~~~~~~~~~~~~------------------- 57 (114)
T cd04629 2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVDDN-----GNLVGFLSEQDCLKQLLESSYHCD------------------- 57 (114)
T ss_pred CCeEeCCCCCHHHHHHHHHhcCCCCccEECCC-----CeEEEEeehHHHHHHhhhhhhccC-------------------
Confidence 46788999999999999988888899999987 899999999999765432111000
Q ss_pred cCCCCCCCccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCcEEEEEecccccH
Q 003801 686 RGSGNGDKIEDIELSEEEMEMYVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHDFMP 765 (794)
Q Consensus 686 ~~~~~~~~i~di~~~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~vvGIITr~Dll~ 765 (794)
....+.++|++.+.++.+++++.++++.|.+.+.+++||+|+ |+++|+||++|+++
T Consensus 58 --------------------~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~----~~~~Gvit~~di~~ 113 (114)
T cd04629 58 --------------------GVATVRDIMTTEVLTVSPDDSIVDLAQLMLKAKPKRYPVVDD----GKLVGQISRRDVLR 113 (114)
T ss_pred --------------------CCccHHHHhccCceEECCCCcHHHHHHHHHHhCCCccCEEEC----CEEEEEEEHHHHhc
Confidence 012356678888899999999999999999999999999984 78999999999975
No 57
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.26 E-value=3.9e-11 Score=109.55 Aligned_cols=110 Identities=22% Similarity=0.255 Sum_probs=91.8
Q ss_pred eeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCCCCCcccccchhhhhhcc
Q 003801 607 LQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNPTVNDAFSQFSAVDFAKR 686 (794)
Q Consensus 607 vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 686 (794)
+.++++++++.++.+.|.+.+++.+||+|++ ++++|+++.+|+.+.+......
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~-----~~~~G~v~~~dl~~~~~~~~~~---------------------- 55 (113)
T cd04615 3 PSCVVLNTDIARAVAEMYTSGSRALPVVDDK-----KRLVGIITRYDVLSYALESEEL---------------------- 55 (113)
T ss_pred CEEeeCCCcHHHHHHHHHHcCCceEeEEcCC-----CCEEEEEEHHHHHHhhhhhhhh----------------------
Confidence 4678999999999999999999999999986 8999999999997643221100
Q ss_pred CCCCCCCccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCcEEEEEecccccH
Q 003801 687 GSGNGDKIEDIELSEEEMEMYVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHDFMP 765 (794)
Q Consensus 687 ~~~~~~~i~di~~~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~vvGIITr~Dll~ 765 (794)
....+.++|.+++.++++++++.++++.|.+.+..++||+|+ +|+++|+||++|+++
T Consensus 56 -------------------~~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~---~g~~~Gvvt~~dl~~ 112 (113)
T cd04615 56 -------------------KDAKVREVMNSPVITIDANDSIAKARWLMSNNNISRLPVLDD---KGKVGGIVTEDDILR 112 (113)
T ss_pred -------------------cCCcHHHhccCCceEECCCCcHHHHHHHHHHcCCCeeeEECC---CCeEEEEEEHHHhhc
Confidence 012345677788899999999999999999999999999997 789999999999975
No 58
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=99.26 E-value=4.5e-11 Score=108.20 Aligned_cols=107 Identities=18% Similarity=0.259 Sum_probs=91.3
Q ss_pred cceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCCCCCcccccchhhhhh
Q 003801 605 APLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNPTVNDAFSQFSAVDFA 684 (794)
Q Consensus 605 ~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~d~~ 684 (794)
+++.++++++++.++.+.|.+.+++.+||+|++ ++++|+++.+|+......
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~-----~~~~G~v~~~dl~~~~~~------------------------ 52 (109)
T cd04583 2 KNPVTITPDRTLAEAIKLMRDKKVDSLLVVDKD-----NKLLGIVSLESLEQAYKE------------------------ 52 (109)
T ss_pred CCCEEECCCCCHHHHHHHHHHCCCceEEEEcCC-----CcEEEEEEHHHHHHHhhc------------------------
Confidence 356678999999999999999999999999986 799999999999653211
Q ss_pred ccCCCCCCCccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCcEEEEEeccccc
Q 003801 685 KRGSGNGDKIEDIELSEEEMEMYVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHDFM 764 (794)
Q Consensus 685 ~~~~~~~~~i~di~~~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~vvGIITr~Dll 764 (794)
..++.++|.+.+.++++++++.++.+.|.+.+.+++||+|+ +|+++|+||++|++
T Consensus 53 ----------------------~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~vv~~---~g~~~Gvit~~~l~ 107 (109)
T cd04583 53 ----------------------AKSLEDIMLEDVFTVQPDASLRDVLGLVLKRGPKYVPVVDE---DGKLVGLITRSSLV 107 (109)
T ss_pred ----------------------CCcHhHhhcCCceEECCCCcHHHHHHHHHHcCCceeeEECC---CCeEEEEEehHHhh
Confidence 01245567778889999999999999999999999999997 78999999999987
Q ss_pred H
Q 003801 765 P 765 (794)
Q Consensus 765 ~ 765 (794)
+
T Consensus 108 ~ 108 (109)
T cd04583 108 D 108 (109)
T ss_pred c
Confidence 5
No 59
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.26 E-value=4.8e-11 Score=108.53 Aligned_cols=108 Identities=19% Similarity=0.293 Sum_probs=91.9
Q ss_pred cceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCCCCCcccccchhhhhh
Q 003801 605 APLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNPTVNDAFSQFSAVDFA 684 (794)
Q Consensus 605 ~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~d~~ 684 (794)
+++.++++++++.++.+.|++.+++.+||+|+ ++++|+++.+|+...+....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~------~~~~G~v~~~dl~~~~~~~~---------------------- 53 (110)
T cd04595 2 SPVKTVRPEATIEEARELLLRYGHTALPVVEG------GRVVGIISRRDVEKALRHGL---------------------- 53 (110)
T ss_pred CCceEeCCCCcHHHHHHHHHHcCCCeeeEeeC------CEEEEEEEHHHHHHHHhccc----------------------
Confidence 46778999999999999999889999999987 58999999999976543211
Q ss_pred ccCCCCCCCccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCcEEEEEeccccc
Q 003801 685 KRGSGNGDKIEDIELSEEEMEMYVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHDFM 764 (794)
Q Consensus 685 ~~~~~~~~~i~di~~~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~vvGIITr~Dll 764 (794)
....+.++|++.+.++++++++.+++++|.+.+.+++||+| +|+++|+||++|++
T Consensus 54 ---------------------~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~----~~~~~Gvvt~~di~ 108 (110)
T cd04595 54 ---------------------GHAPVKDYMSTDVVTVPPDTPLSEVQELMVEHDIGRVPVVE----DGRLVGIVTRTDLL 108 (110)
T ss_pred ---------------------ccCcHHHHhcCCCEEECCCCcHHHHHHHHHHcCCCeeEEEe----CCEEEEEEEhHHhh
Confidence 01235667888899999999999999999999999999998 47899999999997
Q ss_pred H
Q 003801 765 P 765 (794)
Q Consensus 765 ~ 765 (794)
+
T Consensus 109 ~ 109 (110)
T cd04595 109 R 109 (110)
T ss_pred c
Confidence 5
No 60
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=99.25 E-value=4.6e-11 Score=107.75 Aligned_cols=104 Identities=12% Similarity=0.068 Sum_probs=89.0
Q ss_pred ceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCCCCCcccccchhhhhhc
Q 003801 606 PLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNPTVNDAFSQFSAVDFAK 685 (794)
Q Consensus 606 ~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~d~~~ 685 (794)
++.++++++++.++.+.|.+.++..+||+|++ ++++|+++..|+.+...
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~~-----g~~~Giv~~~dl~~~~~-------------------------- 50 (106)
T cd04582 2 EPITVRPDDPLSDALGLMDDSDLRALTVVDAD-----GQPLGFVTRREAARASG-------------------------- 50 (106)
T ss_pred CCcEecCCCcHHHHHHHHHhcCCCEEEEECCC-----CCEEEEEeHHHHHHhcc--------------------------
Confidence 56788999999999999998889999999876 89999999999964210
Q ss_pred cCCCCCCCccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCcEEEEEecccccH
Q 003801 686 RGSGNGDKIEDIELSEEEMEMYVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHDFMP 765 (794)
Q Consensus 686 ~~~~~~~~i~di~~~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~vvGIITr~Dll~ 765 (794)
-.+.++|++.+.++.+++++.+++++|.+.+...+||+|+ +++++|+||++|+++
T Consensus 51 ----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~~---~~~~~Gvi~~~~l~~ 105 (106)
T cd04582 51 ----------------------GCCGDHAEPFKVTVSVDDDLRIVLSRMFAHDMSWLPCVDE---DGRYVGEVTQRSIAD 105 (106)
T ss_pred ----------------------cchhhhcccCCEEECCCCCHHHHHHHHHHCCCCeeeEECC---CCcEEEEEEHHHhhc
Confidence 0134556667778999999999999999999999999997 789999999999975
No 61
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.25 E-value=3.6e-11 Score=111.39 Aligned_cols=120 Identities=19% Similarity=0.283 Sum_probs=93.7
Q ss_pred ceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCCCCCcccccchhhhhhc
Q 003801 606 PLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNPTVNDAFSQFSAVDFAK 685 (794)
Q Consensus 606 ~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~d~~~ 685 (794)
++.++++++++.++.+.|.+.+++.+||+|++ ++++|++++.|++.......+.... .
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~-----~~~~G~v~~~~l~~~~~~~~~~~~~--------~--------- 59 (122)
T cd04635 2 EPVTCTPDDPVSKVWDLMLESGFTGLPVVQKA-----GELIGIITRRDIIRAGSVRTSVEDQ--------Q--------- 59 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcccEECCC-----CcEEEEEEcHHHHhhccccccccch--------h---------
Confidence 56789999999999999998899999999987 8999999999996532110000000 0
Q ss_pred cCCCCCCCccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCcEEEEEecccccH
Q 003801 686 RGSGNGDKIEDIELSEEEMEMYVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHDFMP 765 (794)
Q Consensus 686 ~~~~~~~~i~di~~~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~vvGIITr~Dll~ 765 (794)
. .......++.++|.+++.++++++++.++++.|.+.+.+.+||+|+ +|+++|++|++|+++
T Consensus 60 -------------~--~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~---~g~~~Gvit~~dl~~ 121 (122)
T cd04635 60 -------------R--TQTKASPTVEKIMSTPVYSVTPDDSIATAVELMLEHDIGRLPVVNE---KDQLVGIVDRHDVLK 121 (122)
T ss_pred -------------h--hhhhccCcHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCeeeEEcC---CCcEEEEEEhHHhhc
Confidence 0 0000123456778888999999999999999999999999999997 789999999999975
No 62
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.25 E-value=4.3e-11 Score=111.35 Aligned_cols=122 Identities=17% Similarity=0.232 Sum_probs=95.3
Q ss_pred ceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhcc-CCCCCCCCCCcccccchhhhhh
Q 003801 606 PLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKA-FLPTPNPTVNDAFSQFSAVDFA 684 (794)
Q Consensus 606 ~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~-~~~~~~~~~~~~~~~~~~~d~~ 684 (794)
++.++++++++.++++.|.+.+++.+||+|++ .++++|+|+++|+...+.+.. +..... .
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~~----~~~~~G~v~~~dl~~~~~~~~~~~~~~~---------------~ 62 (125)
T cd04631 2 DVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEG----TGKLVGIITATDILKYLGGGEKFNKIKT---------------G 62 (125)
T ss_pred CceEeCCCCcHHHHHHHHHHcCcccceeEeCC----CCEEEEEEEHHHHHHHhhccchhccccc---------------c
Confidence 56788999999999999999999999999873 268999999999987654321 000000 0
Q ss_pred ccCCCCCCCccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCcEEEEEeccccc
Q 003801 685 KRGSGNGDKIEDIELSEEEMEMYVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHDFM 764 (794)
Q Consensus 685 ~~~~~~~~~i~di~~~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~vvGIITr~Dll 764 (794)
.+ ......++.++|++.+.++++++++.++++.|++.+.+++||+|+ +|+++|+||++|++
T Consensus 63 ----------~~------~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~---~~~~~Gvit~~di~ 123 (125)
T cd04631 63 ----------NG------LEAINEPVRSIMTRNVITITPDDSIKDAAELMLEKRVGGLPVVDD---DGKLVGIVTERDLL 123 (125)
T ss_pred ----------cc------chhhhcCHHHHhcCCceEeCCCCcHHHHHHHHHHcCCceEEEEcC---CCcEEEEEEHHHhh
Confidence 00 000123466788888999999999999999999999999999997 68999999999997
Q ss_pred H
Q 003801 765 P 765 (794)
Q Consensus 765 ~ 765 (794)
+
T Consensus 124 ~ 124 (125)
T cd04631 124 K 124 (125)
T ss_pred c
Confidence 6
No 63
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=99.25 E-value=4.8e-11 Score=108.83 Aligned_cols=112 Identities=21% Similarity=0.331 Sum_probs=93.5
Q ss_pred ceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCCCCCcccccchhhhhhc
Q 003801 606 PLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNPTVNDAFSQFSAVDFAK 685 (794)
Q Consensus 606 ~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~d~~~ 685 (794)
++.++++++++.++.+.|++.+++.+||+|++ ++++|+|+++|+...+.+....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-----~~~~G~v~~~~l~~~~~~~~~~--------------------- 55 (114)
T cd04613 2 DVVTIPEDTPLNELLDVIAHSPENNFPVVDDD-----GRLVGIVSLDDIREILFDPSLY--------------------- 55 (114)
T ss_pred CceeeCCCCcHHHHHHHHHhCCCcceeEECCC-----CCEEEEEEHHHHHHHHhccccc---------------------
Confidence 56789999999999999999999999999986 7999999999997654321100
Q ss_pred cCCCCCCCccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCcEEEEEecccccH
Q 003801 686 RGSGNGDKIEDIELSEEEMEMYVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHDFMP 765 (794)
Q Consensus 686 ~~~~~~~~i~di~~~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~vvGIITr~Dll~ 765 (794)
...++.++|++++.++++++++.++++.|.+.+.+++||+|++ +++++|+||++|++.
T Consensus 56 --------------------~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~--~~~~~Gvvt~~di~~ 113 (114)
T cd04613 56 --------------------DLVVASDIMTKPPVVVYPEDSLEDALKKFEDSDYEQLPVVDDD--PGKLLGILSRSDLLS 113 (114)
T ss_pred --------------------ccEEHHHhccCCCcEEcCCCCHHHHHHHHhhCCccEeeEEeCC--CCEEEEEEEhHHhhc
Confidence 0134567788899999999999999999999999999999731 478999999999875
No 64
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.25 E-value=6.6e-11 Score=110.13 Aligned_cols=120 Identities=14% Similarity=0.192 Sum_probs=91.9
Q ss_pred ceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCCCCCcccccchhhhhhc
Q 003801 606 PLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNPTVNDAFSQFSAVDFAK 685 (794)
Q Consensus 606 ~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~d~~~ 685 (794)
++.++++++++.++.+.|.+.++..+||+|++ +++++|+|+.+|+++.+......... .+..
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~----~~~~~Giv~~~dl~~~~~~~~~~~~~-------------~~~~- 63 (123)
T cd04627 2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEEE----SGEVIGILSQRRLVEFLWENARSFPG-------------LDPL- 63 (123)
T ss_pred CceecCCCCCHHHHHHHHhhCCcceEEEEeCC----CCcEEEEEEHHHHHHHHHHhHHhccc-------------hhhh-
Confidence 56788999999999999998889999999873 16899999999998765432100000 0000
Q ss_pred cCCCCCCCccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCcEEEEEeccccc
Q 003801 686 RGSGNGDKIEDIELSEEEMEMYVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHDFM 764 (794)
Q Consensus 686 ~~~~~~~~i~di~~~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~vvGIITr~Dll 764 (794)
.....+..++|.+++.++++++++.++++.|.+.+.+++||+|+ +++++|+||++|+-
T Consensus 64 ------------------~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~~~~vGiit~~di~ 121 (123)
T cd04627 64 ------------------YPIPLRDLTIGTSDVISINGDQPLIDALHLMHNEGISSVAVVDN---QGNLIGNISVTDVR 121 (123)
T ss_pred ------------------hhhhhhhcccCcCCceEeCCCCCHHHHHHHHHHcCCceEEEECC---CCcEEEEEeHHHhh
Confidence 00012233467788889999999999999999999999999997 78999999999974
No 65
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.24 E-value=6.2e-11 Score=107.94 Aligned_cols=109 Identities=17% Similarity=0.259 Sum_probs=91.2
Q ss_pred ceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCCCCCcccccchhhhhhc
Q 003801 606 PLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNPTVNDAFSQFSAVDFAK 685 (794)
Q Consensus 606 ~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~d~~~ 685 (794)
++.+++++++++++.+.|.+++++.+||+|++ +++.|+++.+|+.........
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~-----~~~~G~v~~~dl~~~~~~~~~---------------------- 54 (111)
T cd04626 2 DFPTIDEDASIREALHEMLKYNTNEIIVKDNE-----EKLKGVVTFTDILDLDLFESF---------------------- 54 (111)
T ss_pred CceEECCCccHHHHHHHHHHhCCCeEEEEcCC-----CCEEEEEehHHhHHHHhhccc----------------------
Confidence 56788999999999999999999999999987 899999999999764321100
Q ss_pred cCCCCCCCccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCcEEEEEecccccH
Q 003801 686 RGSGNGDKIEDIELSEEEMEMYVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHDFMP 765 (794)
Q Consensus 686 ~~~~~~~~i~di~~~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~vvGIITr~Dll~ 765 (794)
....+.++|++++.++.+++++.++.+.|.+.+.+.+||+|+ |+++|+||++|+++
T Consensus 55 --------------------~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~----~~~~G~it~~di~~ 110 (111)
T cd04626 55 --------------------LEKKVFNIVSQDVFYVNEEDTIDEALDIMREKQIGRLPVVDD----NKLIGVVRTKDILD 110 (111)
T ss_pred --------------------ccCcHHHHhcCCcEEEcCCCcHHHHHHHHHHcCCCeeeEeEC----CEEEEEEEhHHhcc
Confidence 011345677788889999999999999999999999999984 78999999999874
No 66
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=99.24 E-value=3.5e-11 Score=138.08 Aligned_cols=147 Identities=18% Similarity=0.202 Sum_probs=113.4
Q ss_pred hhcchHHHHHHHHcCCCcccc-ccccccccceeccccccceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEE
Q 003801 568 AFNGNIYDLIMKAKGFPYLET-HVEPYMRQLTVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILY 646 (794)
Q Consensus 568 ~~~~~iy~~~l~~~g~p~l~~-~~~~~l~~l~v~diM~~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~ 646 (794)
++..-.++.++..+++-..+. ..+..++.++++|+|.+++.++++++++.++++.|++++++.+||+|++ ++++
T Consensus 305 y~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~~v~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~-----~~~~ 379 (454)
T TIGR01137 305 YMTKFLNDEWMKDNGFLDDEVLTVFDVLKNATVKDLHLPAPVTVHPTETVGDAIEILREYGFDQLPVVTEA-----GKVL 379 (454)
T ss_pred ccCcccChHHHHhcCCcccccccHHHHhccCCHHHhCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCC-----CeEE
Confidence 334445567777776532211 1234588999999999999999999999999999999999999999986 8999
Q ss_pred EEEeHHHHHHHHHhccCCCCCCCCCCcccccchhhhhhccCCCCCCCccccccchhhhhcccccccccccCCceecCCCC
Q 003801 647 GLILRAHLITLLKKKAFLPTPNPTVNDAFSQFSAVDFAKRGSGNGDKIEDIELSEEEMEMYVDLHPFANASPYTVVETMS 726 (794)
Q Consensus 647 GiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~di~~~~~~~~~~idl~~im~~~p~tV~~~~s 726 (794)
|+|+.+|+...+...... ....+.++|++++.+++++++
T Consensus 380 Givt~~dl~~~~~~~~~~-----------------------------------------~~~~v~~im~~~~~~v~~~~~ 418 (454)
T TIGR01137 380 GSVTLRELLSALFAGKAN-----------------------------------------PDDAVSKVMSKKFIQIGEGEK 418 (454)
T ss_pred EEEEHHHHHHHHhccCCC-----------------------------------------cCCCHHHhcCCCCeEECCcCc
Confidence 999999997754321100 011356678888889999999
Q ss_pred HHHHHHHHHHcCCCEEEEeecCCCCCcEEEEEecccccHH
Q 003801 727 LAKALILFREVGLRHLLVIPKISNGSPVMGILTRHDFMPE 766 (794)
Q Consensus 727 L~~a~~lf~~~glr~LpVVd~~~~~g~vvGIITr~Dll~~ 766 (794)
+.++.++|.+.+ .+||++ +++++|+||++|+++.
T Consensus 419 l~~a~~~~~~~~---~~vV~~---~g~liGvvt~~dll~~ 452 (454)
T TIGR01137 419 LSDLSKFLEKNS---SAIVTE---EGKPIGVVTKIDLLSF 452 (454)
T ss_pred HHHHHHHHHHCC---eeEEEE---CCEEEEEEEHHHHHHh
Confidence 999999998854 456665 6899999999999875
No 67
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=99.23 E-value=9.7e-11 Score=106.39 Aligned_cols=108 Identities=19% Similarity=0.320 Sum_probs=91.6
Q ss_pred ceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCCCCCcccccchhhhhhc
Q 003801 606 PLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNPTVNDAFSQFSAVDFAK 685 (794)
Q Consensus 606 ~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~d~~~ 685 (794)
++.++++++++.++.+.|.+.+++.+||+|+ ++++|+++.+|+++...+.. .
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~------~~~~G~v~~~~l~~~~~~~~----~------------------ 53 (110)
T cd04588 2 PLITLNPNATLREAARLFNTHHIHGAPVVDD------GKLVGIVTLSDIAHAIARGL----E------------------ 53 (110)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCEEEEeeC------CEEEEEEEHHHHHHHHhccc----c------------------
Confidence 5678899999999999999999999999987 68999999999976543211 0
Q ss_pred cCCCCCCCccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCcEEEEEecccccH
Q 003801 686 RGSGNGDKIEDIELSEEEMEMYVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHDFMP 765 (794)
Q Consensus 686 ~~~~~~~~i~di~~~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~vvGIITr~Dll~ 765 (794)
..++.++|++++.++++++++.++.+.|.+.+.+.+||+|+ +|+++|+||++|+++
T Consensus 54 ---------------------~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~---~~~~~G~i~~~dl~~ 109 (110)
T cd04588 54 ---------------------LAKVKDVMTKDVITIDEDEQLYDAIRLMNKHNVGRLIVTDD---EGRPVGIITRTDILR 109 (110)
T ss_pred ---------------------ccCHHHHhcCCceEECCCCCHHHHHHHHHhcCCCEEEEECC---CCCEEEEEEhHHhhc
Confidence 02345677788899999999999999999999999999987 789999999999975
No 68
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.23 E-value=7.3e-11 Score=110.58 Aligned_cols=126 Identities=20% Similarity=0.276 Sum_probs=94.5
Q ss_pred ceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCCCCCcccccchhhhhhc
Q 003801 606 PLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNPTVNDAFSQFSAVDFAK 685 (794)
Q Consensus 606 ~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~d~~~ 685 (794)
++.++++++++.++.+.|.+.+++.+||+|++ +++.|+|+.+|+...+......... .... .
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~-----~~~~G~it~~dl~~~~~~~~~~~~~--------~~~~-~---- 63 (128)
T cd04632 2 DVITVREDDSVGKAINVLREHGISRLPVVDDN-----GKLTGIVTRHDIVDFVVRDRDKART--------GDRS-G---- 63 (128)
T ss_pred CceEeCCCCCHHHHHHHHHHcCCCEEEEECCC-----CcEEEEEEHHHHHHHHhhhhhhcch--------hhhh-h----
Confidence 45678999999999999999999999999987 8999999999998765321100000 0000 0
Q ss_pred cCCCCCCCccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCcEEEEEecccccH
Q 003801 686 RGSGNGDKIEDIELSEEEMEMYVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHDFMP 765 (794)
Q Consensus 686 ~~~~~~~~i~di~~~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~vvGIITr~Dll~ 765 (794)
..+.....++.++|+++++++.+++++.++.++|.+.+.+.+||+++ .++++++|+||++|+++
T Consensus 64 ---------------~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~-~~~~~~~Gvit~~di~~ 127 (128)
T cd04632 64 ---------------EKERMLDLPVYDAMSSPVITASPNDSVRDAVDRMLENDDSSVVVVTP-DDDTKVVGILTKKDVLR 127 (128)
T ss_pred ---------------hhhhhccCcHHHHhcCCCceECCCCcHHHHHHHHHhCCCCeEeEecc-CCCCcEEEEEEhHhhhc
Confidence 00001123466788888999999999999999999999999999842 12588999999999975
No 69
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.22 E-value=8.9e-11 Score=107.65 Aligned_cols=110 Identities=16% Similarity=0.232 Sum_probs=87.8
Q ss_pred ceeEEeccccHHHHHHHHhcCC-CCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCCCCCcccccchhhhhh
Q 003801 606 PLQLFHGIEKAGNVVHVLRTTR-HNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNPTVNDAFSQFSAVDFA 684 (794)
Q Consensus 606 ~vv~l~~~~sv~~a~~~L~~~~-~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~d~~ 684 (794)
++.++++++++.++.+.|.+.+ +..+||+|+ ++++|+++..|++..+......
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~------~~~~G~v~~~dl~~~~~~~~~~-------------------- 55 (115)
T cd04620 2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVEK------GRLLGIFTERDIVRLTAIGKDL-------------------- 55 (115)
T ss_pred CCeEeCCCCcHHHHHHHHHhcCCCceEEEcCC------CcEEEEEeHHHHHHHHhcCCCc--------------------
Confidence 4567899999999999998877 667777774 7899999999997654321100
Q ss_pred ccCCCCCCCccccccchhhhhcccccccccccCCceecCC--CCHHHHHHHHHHcCCCEEEEeecCCCCCcEEEEEeccc
Q 003801 685 KRGSGNGDKIEDIELSEEEMEMYVDLHPFANASPYTVVET--MSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHD 762 (794)
Q Consensus 685 ~~~~~~~~~i~di~~~~~~~~~~idl~~im~~~p~tV~~~--~sL~~a~~lf~~~glr~LpVVd~~~~~g~vvGIITr~D 762 (794)
....+.++|.+++.++.++ +++.+++++|.+.+...+||+|+ +|+++|+||++|
T Consensus 56 ---------------------~~~~i~~~~~~~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~---~~~~~Gvit~~d 111 (115)
T cd04620 56 ---------------------SDLPIGEVMTQPVVTLQESEIQDIFTALSLFRQHQIRHLPVLDD---QGQLIGLVTAES 111 (115)
T ss_pred ---------------------cccCHHHhcCCCcEEEecccccCHHHHHHHHHHhCCceEEEEcC---CCCEEEEEEhHH
Confidence 0112456677778888887 78999999999999999999997 789999999999
Q ss_pred ccH
Q 003801 763 FMP 765 (794)
Q Consensus 763 ll~ 765 (794)
+++
T Consensus 112 l~~ 114 (115)
T cd04620 112 IRQ 114 (115)
T ss_pred hhc
Confidence 986
No 70
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=99.22 E-value=4.7e-11 Score=135.96 Aligned_cols=122 Identities=18% Similarity=0.273 Sum_probs=103.2
Q ss_pred ccceeccccccceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCCCCCcc
Q 003801 595 RQLTVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNPTVNDA 674 (794)
Q Consensus 595 ~~l~v~diM~~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~~~~~~ 674 (794)
+-++.++.|.++++++++++++.++.+.|++++++.+||+|++. +.++++|+|+.+|+..... .
T Consensus 78 ~Vk~~~~~~~~~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~--~~~~lvGIVt~rDL~~~~~-------~------- 141 (450)
T TIGR01302 78 RVKRAENGIISDPVTISPETTVADVLELMERKGISGIPVVEDGD--MTGKLVGIITKRDIRFVKD-------K------- 141 (450)
T ss_pred hhccccCceecCceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCC--CCCeEEEEEEHHHHhhhhc-------C-------
Confidence 34577889999999999999999999999999999999999740 1148999999999953210 0
Q ss_pred cccchhhhhhccCCCCCCCccccccchhhhhcccccccccc-cCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCc
Q 003801 675 FSQFSAVDFAKRGSGNGDKIEDIELSEEEMEMYVDLHPFAN-ASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSP 753 (794)
Q Consensus 675 ~~~~~~~d~~~~~~~~~~~i~di~~~~~~~~~~idl~~im~-~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~ 753 (794)
..+++++|+ ++++++++++++.+++++|++.+.+++||+|+ +|+
T Consensus 142 --------------------------------~~~V~dvm~~~~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe---~G~ 186 (450)
T TIGR01302 142 --------------------------------GKPVSEVMTREEVITVPEGIDLEEALKVLHEHRIEKLPVVDK---NGE 186 (450)
T ss_pred --------------------------------CCCHHHhhCCCCCEEECCCCcHHHHHHHHHHcCCCeEEEEcC---CCc
Confidence 123567787 48899999999999999999999999999998 899
Q ss_pred EEEEEecccccHHH
Q 003801 754 VMGILTRHDFMPEH 767 (794)
Q Consensus 754 vvGIITr~Dll~~~ 767 (794)
++|+||++|+++..
T Consensus 187 lvGiVT~~DIl~~~ 200 (450)
T TIGR01302 187 LVGLITMKDIVKRR 200 (450)
T ss_pred EEEEEEhHHhhhcc
Confidence 99999999999864
No 71
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.22 E-value=7.7e-11 Score=110.28 Aligned_cols=124 Identities=19% Similarity=0.284 Sum_probs=92.3
Q ss_pred ceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCCCCCcccccchhhhhhc
Q 003801 606 PLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNPTVNDAFSQFSAVDFAK 685 (794)
Q Consensus 606 ~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~d~~~ 685 (794)
++.++++++++.++.+.|.+++++.+||+|++ ++++|+++..|+.....+....... ....+.
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~~-----~~~~Giv~~~dl~~~~~~~~~~~~~-----------~~~~~~- 64 (126)
T cd04642 2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDEK-----GKLIGNISASDLKGLLLSPDDLLLY-----------RTITFK- 64 (126)
T ss_pred CeEEECCCccHHHHHHHHHHhCCCcccEECCC-----CcEEEEEEHHHhhhhhcCcchhhcc-----------cchhhh-
Confidence 46789999999999999999999999999987 8999999999997754321100000 000000
Q ss_pred cCCCCCCCccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCcEEEEEecccccH
Q 003801 686 RGSGNGDKIEDIELSEEEMEMYVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHDFMP 765 (794)
Q Consensus 686 ~~~~~~~~i~di~~~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~vvGIITr~Dll~ 765 (794)
++. ....+..+.|.+++.++++++++.++.++|.+.+.+++||+|+ +++++|+||++|+++
T Consensus 65 ----------~~~------~~~~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~---~~~~~Giit~~dil~ 125 (126)
T cd04642 65 ----------ELS------EKFTDSDGVKSRPLITCTPSSTLKEVITKLVANKVHRVWVVDE---EGKPIGVITLTDIIS 125 (126)
T ss_pred ----------hhh------hhcccccccccCCCeEECCCCcHHHHHHHHHHhCCcEEEEECC---CCCEEEEEEHHHHhc
Confidence 000 0001122356677889999999999999999999999999997 789999999999874
No 72
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.22 E-value=1.3e-10 Score=106.09 Aligned_cols=111 Identities=17% Similarity=0.230 Sum_probs=90.9
Q ss_pred ceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCCCCCcccccchhhhhhc
Q 003801 606 PLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNPTVNDAFSQFSAVDFAK 685 (794)
Q Consensus 606 ~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~d~~~ 685 (794)
++.++++++++.++.+.|.+++++.+||+|+ ++++|+++++|++..+...... .
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~------~~~~G~i~~~~l~~~~~~~~~~--~------------------ 55 (113)
T cd04622 2 DVVTVSPDDTIREAARLMREHDVGALPVCEN------DRLVGIVTDRDIVVRAVAEGRD--P------------------ 55 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEeeC------CEEEEEEEhHHHHHHHhhccCC--c------------------
Confidence 5678999999999999999999999999987 6999999999986321110000 0
Q ss_pred cCCCCCCCccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCcEEEEEecccccH
Q 003801 686 RGSGNGDKIEDIELSEEEMEMYVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHDFMP 765 (794)
Q Consensus 686 ~~~~~~~~i~di~~~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~vvGIITr~Dll~ 765 (794)
...++.++|++.+.++.+++++.++.+.|.+.+.+++||+|+ +|+++|+||++|+++
T Consensus 56 --------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~---~~~~~G~it~~di~~ 112 (113)
T cd04622 56 --------------------DTTTVGDVMTRGVVTVTEDDDVDEAARLMREHQVRRLPVVDD---DGRLVGIVSLGDLAR 112 (113)
T ss_pred --------------------ccCCHHHhccCCccEECCCCCHHHHHHHHHHcCCCeeeEECC---CCcEEEEEEHHHhhc
Confidence 011356678888999999999999999999999999999987 689999999999975
No 73
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.22 E-value=7.5e-11 Score=111.29 Aligned_cols=130 Identities=19% Similarity=0.288 Sum_probs=96.1
Q ss_pred ceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCCCCCcccccchhhhhhc
Q 003801 606 PLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNPTVNDAFSQFSAVDFAK 685 (794)
Q Consensus 606 ~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~d~~~ 685 (794)
++.++++++++.++.+.|.+.+++.+||+|++ ++++|+|+..++...+.+....... ..+....+.+
T Consensus 2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~-----~~~~G~i~~~~l~~~~~~~~~~~~~--------~~~~~~~~~~ 68 (132)
T cd04636 2 DVITVKKDDTLRDVVEILLTGKISGVPVVDNE-----GRVVGIVSEGDLIRKIYKGKGLFYV--------TLLYSVIFLD 68 (132)
T ss_pred CCeEeCCCCcHHHHHHHHHHhCCCccceECCC-----CCEEEEEeHHHHHHHHhccCCcccc--------cccccccccc
Confidence 46789999999999999998899999999987 8999999999998765432110000 0000000000
Q ss_pred cCCCCCCCccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCcEEEEEecccccH
Q 003801 686 RGSGNGDKIEDIELSEEEMEMYVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHDFMP 765 (794)
Q Consensus 686 ~~~~~~~~i~di~~~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~vvGIITr~Dll~ 765 (794)
++ ..+.. ...++.++|++++..+.+++++.++.++|.+.+.+++||+|+ |+++|+||++|+++
T Consensus 69 ---------~~---~~~~~-~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~----~~~iGvit~~dl~~ 131 (132)
T cd04636 69 ---------ES---KIKKL-LGKKVEEIMTKKVITVDEDTTIEDVARIMSKKNIKRLPVVDD----GKLVGIISRGDIIR 131 (132)
T ss_pred ---------hH---HHHHH-cCCCHHHhccCCceEECCCCcHHHHHHHHHHCCCCeeEEEEC----CEEEEEEEHHHhhc
Confidence 00 00000 123677889999999999999999999999999999999984 78999999999985
No 74
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=99.21 E-value=7.9e-11 Score=107.50 Aligned_cols=111 Identities=21% Similarity=0.216 Sum_probs=92.9
Q ss_pred ceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCCCCCcccccchhhhhhc
Q 003801 606 PLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNPTVNDAFSQFSAVDFAK 685 (794)
Q Consensus 606 ~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~d~~~ 685 (794)
++.++++++++.++.+.+.+.+++.+||+|++ ++++|+++..++.+.+.+.. ..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~-----~~~~G~v~~~~i~~~~~~~~-~~~------------------- 57 (114)
T cd04604 3 ALPLVSPDTSLKDALLEMSRKGLGMTAVVDED-----GRLVGIFTDGDLRRALEKGL-DIL------------------- 57 (114)
T ss_pred cccccCCCCcHHHHHHHHHhcCccEEEEEcCC-----CCEEEEechHHHHHHHhccC-ccc-------------------
Confidence 45678899999999999988888999999987 89999999999987664321 000
Q ss_pred cCCCCCCCccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCcEEEEEecccccH
Q 003801 686 RGSGNGDKIEDIELSEEEMEMYVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHDFMP 765 (794)
Q Consensus 686 ~~~~~~~~i~di~~~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~vvGIITr~Dll~ 765 (794)
...+.++|++.+.++.+++++.++.++|++.+...+||+|+ +++++|+||++|+++
T Consensus 58 ---------------------~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~---~~~~iG~it~~di~~ 113 (114)
T cd04604 58 ---------------------TLPVADVMTRNPKTIDPDALAAEALELMEENKITALPVVDD---NGRPVGVLHIHDLLR 113 (114)
T ss_pred ---------------------cCCHHHhhccCCeEECCCCcHHHHHHHHHHcCCCEEEEECC---CCCEEEEEEHHHhhc
Confidence 01355677788889999999999999999999999999997 789999999999975
No 75
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=99.21 E-value=1.1e-10 Score=106.46 Aligned_cols=111 Identities=17% Similarity=0.229 Sum_probs=91.1
Q ss_pred ceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCCCCCcccccchhhhhhc
Q 003801 606 PLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNPTVNDAFSQFSAVDFAK 685 (794)
Q Consensus 606 ~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~d~~~ 685 (794)
++.++++++++.++.+.|.+.+.+.+||+|+ ++++|+|+.+|++..+.......
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~------~~~~G~v~~~dl~~~~~~~~~~~-------------------- 55 (113)
T cd04587 2 KPATVSPTTTVQEAAKLMREKRVSCVLVMDG------NKLVGIFTSKDIALRVVAQGLDP-------------------- 55 (113)
T ss_pred CCeEeCCCCCHHHHHHHHHHcCCCeEEEEEC------CEEEEEEEhHHHHHHHHhcCCCc--------------------
Confidence 5678899999999999999888899999986 68999999999964332111000
Q ss_pred cCCCCCCCccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCcEEEEEecccccH
Q 003801 686 RGSGNGDKIEDIELSEEEMEMYVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHDFMP 765 (794)
Q Consensus 686 ~~~~~~~~i~di~~~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~vvGIITr~Dll~ 765 (794)
...++.++|++++.++.+++++.++++.|.+.+.+++||+|+ +++++|+||++|++.
T Consensus 56 --------------------~~~~v~~i~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~---~~~~~Gvvs~~dl~~ 112 (113)
T cd04587 56 --------------------ESTLVERVMTPNPVCATSDTPVLEALHLMVQGKFRHLPVVDK---SGQVVGLLDVTKLTH 112 (113)
T ss_pred --------------------CcCCHHHhcCCCCeEEcCCCCHHHHHHHHHHcCCCcccEECC---CCCEEEEEEHHHhcc
Confidence 012356678888899999999999999999999999999997 689999999999975
No 76
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=99.21 E-value=4.8e-11 Score=136.72 Aligned_cols=134 Identities=10% Similarity=0.095 Sum_probs=107.1
Q ss_pred ceeccccccceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCCCCCcccc
Q 003801 597 LTVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNPTVNDAFS 676 (794)
Q Consensus 597 l~v~diM~~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~~~~~~~~ 676 (794)
.++++.|..+++++++++++.++.++|++++++.+||+|++. ..++++|+|+.+|+... . .
T Consensus 96 k~~e~g~i~dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~--~~gkLvGIVt~~DL~~~-~------~---------- 156 (495)
T PTZ00314 96 KRFENGFIMDPYVLSPNHTVADVLEIKEKKGFSSILITVDGK--VGGKLLGIVTSRDIDFV-K------D---------- 156 (495)
T ss_pred cccccccccCCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCc--cCCeEEEEEEHHHHhhc-c------c----------
Confidence 346778889999999999999999999999999999998730 12789999999998421 0 0
Q ss_pred cchhhhhhccCCCCCCCccccccchhhhhccccccccccc--CCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCcE
Q 003801 677 QFSAVDFAKRGSGNGDKIEDIELSEEEMEMYVDLHPFANA--SPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPV 754 (794)
Q Consensus 677 ~~~~~d~~~~~~~~~~~i~di~~~~~~~~~~idl~~im~~--~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~v 754 (794)
...+++++|++ +++++++++++.++.++|.+.+.+.+||+|+ ++++
T Consensus 157 -----------------------------~~~~V~diMt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~---~g~l 204 (495)
T PTZ00314 157 -----------------------------KSTPVSEVMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVND---NGEL 204 (495)
T ss_pred -----------------------------CCCCHHHhhCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcC---CCcE
Confidence 01235677876 7889999999999999999999999999998 8899
Q ss_pred EEEEecccccHHHHHhcCcccccccccccc
Q 003801 755 MGILTRHDFMPEHILALNPLLARSRWKRLR 784 (794)
Q Consensus 755 vGIITr~Dll~~~~~~~~~~l~~~~~~~~~ 784 (794)
+|+||++|+++.. .+|+..+...++++
T Consensus 205 iGIIT~~DIl~~~---~~p~a~~D~~GrL~ 231 (495)
T PTZ00314 205 VALVSRSDLKKNR---GYPNASLDSNGQLL 231 (495)
T ss_pred EEEEEehHhhhcc---cCchhhhccCCCEE
Confidence 9999999999753 35554444433333
No 77
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=99.21 E-value=1.5e-10 Score=105.04 Aligned_cols=109 Identities=21% Similarity=0.331 Sum_probs=91.9
Q ss_pred ceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCCCCCcccccchhhhhhc
Q 003801 606 PLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNPTVNDAFSQFSAVDFAK 685 (794)
Q Consensus 606 ~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~d~~~ 685 (794)
++.++++++++.++.+.|.++++..+||+|+ ++++|+++.+|+.+......-
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~------~~~~G~v~~~~l~~~~~~~~~---------------------- 53 (111)
T cd04611 2 QILTCPPDTSLAEAASRMRERRISSIVVVDD------GRPLGIVTERDILRLLASGPD---------------------- 53 (111)
T ss_pred CceEECCCCcHHHHHHHHHHcCCCEEEEeeC------CEEEEEEeHHHHHHHHhcCCC----------------------
Confidence 4668899999999999999988999999986 689999999999765432110
Q ss_pred cCCCCCCCccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCcEEEEEecccccH
Q 003801 686 RGSGNGDKIEDIELSEEEMEMYVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHDFMP 765 (794)
Q Consensus 686 ~~~~~~~~i~di~~~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~vvGIITr~Dll~ 765 (794)
....+.++|++++.++++++++.++++.|.+.+.+.+||+|+ +|+++|+||++|+++
T Consensus 54 --------------------~~~~v~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~~---~~~~~Gvi~~~di~~ 110 (111)
T cd04611 54 --------------------LQTPVGEVMSSPLLTVPADTSLYDARQLMREHGIRHLVVVDD---DGELLGLLSQTDLLQ 110 (111)
T ss_pred --------------------CCcCHHHhcCCCceEECCCCCHHHHHHHHHHcCCeEEEEECC---CCcEEEEEEhHHhhc
Confidence 012356678888899999999999999999999999999997 789999999999875
No 78
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=99.21 E-value=4.8e-11 Score=135.57 Aligned_cols=121 Identities=16% Similarity=0.184 Sum_probs=104.6
Q ss_pred ccccceeccccccceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCCCCC
Q 003801 593 YMRQLTVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNPTVN 672 (794)
Q Consensus 593 ~l~~l~v~diM~~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~~~~ 672 (794)
.++.+++.++|.+++++++++++++++.+.|++.+++.+||+|+ ++++|+|+.+|+... + .
T Consensus 84 ~v~~VKv~eim~~~pvtv~p~~tI~eA~~lm~~~~~~~~vVvD~------gklvGIVT~rDL~~~-------~-~----- 144 (475)
T TIGR01303 84 TVAFVKSRDLVLDTPITLAPHDTVSDAMALIHKRAHGAAVVILE------DRPVGLVTDSDLLGV-------D-R----- 144 (475)
T ss_pred HHhhcchhhccccCCeEECCCCCHHHHHHHHHhcCCeEEEEEEC------CEEEEEEEHHHhhcC-------C-C-----
Confidence 46678899999999999999999999999999999988998885 689999999998210 0 0
Q ss_pred cccccchhhhhhccCCCCCCCccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCC
Q 003801 673 DAFSQFSAVDFAKRGSGNGDKIEDIELSEEEMEMYVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGS 752 (794)
Q Consensus 673 ~~~~~~~~~d~~~~~~~~~~~i~di~~~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g 752 (794)
...++++|+++++++++++++.++.++|.+++.+++||+|+ ++
T Consensus 145 ----------------------------------~~~V~dIMt~~litv~~~~sL~eAl~lM~~~~i~~LPVVD~---~g 187 (475)
T TIGR01303 145 ----------------------------------FTQVRDIMSTDLVTAPADTEPRKAFDLLEHAPRDVAPLVDA---DG 187 (475)
T ss_pred ----------------------------------CCCHHHHccCCceEeCCCCcHHHHHHHHHHcCCCEEEEEcC---CC
Confidence 12356788899999999999999999999999999999997 78
Q ss_pred cEEEEEecccccHHHHH
Q 003801 753 PVMGILTRHDFMPEHIL 769 (794)
Q Consensus 753 ~vvGIITr~Dll~~~~~ 769 (794)
+++|+||++|+++....
T Consensus 188 ~LvGIIT~~DLl~~~~~ 204 (475)
T TIGR01303 188 TLAGILTRTGALRATIY 204 (475)
T ss_pred eEEEEEEHHHHHHHHhC
Confidence 99999999999985543
No 79
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.21 E-value=9.4e-11 Score=108.70 Aligned_cols=121 Identities=16% Similarity=0.235 Sum_probs=95.0
Q ss_pred ceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCCCCCcccccchhhhhhc
Q 003801 606 PLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNPTVNDAFSQFSAVDFAK 685 (794)
Q Consensus 606 ~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~d~~~ 685 (794)
++++++++++++++.+.|++.+++.+||+|+ ++++|+++.+++...+.+.. .... + ...++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~------~~~~G~v~~~~l~~~~~~~~-~~~~----~------~~~~~-- 62 (122)
T cd04637 2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVED------NELVGVISDRDYLKAISPFL-GTAG----E------TEKDL-- 62 (122)
T ss_pred CceEeCCCCCHHHHHHHHHhCCCCEEEEEeC------CeEEEEEEHHHHHHHHHHHh-cccc----c------hHHHH--
Confidence 5678999999999999999999999999996 68999999999977554211 0000 0 00000
Q ss_pred cCCCCCCCccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCcEEEEEecccccH
Q 003801 686 RGSGNGDKIEDIELSEEEMEMYVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHDFMP 765 (794)
Q Consensus 686 ~~~~~~~~i~di~~~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~vvGIITr~Dll~ 765 (794)
.....++.++|+++++++.+++++.++.+.|.+.+.+.+||+|+ +++++|++|++|+++
T Consensus 63 ------------------~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~---~~~~~Gvit~~dll~ 121 (122)
T cd04637 63 ------------------ATLNRRAHQIMTRDPITVSPDTPVDEASKLLLENSISCLPVVDE---NGQLIGIITWKDLLK 121 (122)
T ss_pred ------------------HHHHhHHHHhhcCCCeeeCCCCcHHHHHHHHHHcCCCeEeEECC---CCCEEEEEEHHHhhh
Confidence 00112467888899999999999999999999999999999987 789999999999986
Q ss_pred H
Q 003801 766 E 766 (794)
Q Consensus 766 ~ 766 (794)
+
T Consensus 122 ~ 122 (122)
T cd04637 122 Y 122 (122)
T ss_pred C
Confidence 3
No 80
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=99.20 E-value=2.8e-11 Score=138.02 Aligned_cols=127 Identities=17% Similarity=0.187 Sum_probs=105.9
Q ss_pred cccceeccccccceeEEeccccHHHHHHHHhc-----CCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCCCCCC
Q 003801 594 MRQLTVGDVVTAPLQLFHGIEKAGNVVHVLRT-----TRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPN 668 (794)
Q Consensus 594 l~~l~v~diM~~~vv~l~~~~sv~~a~~~L~~-----~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~ 668 (794)
+..-+++++|++++++++++++++++.+.+++ ++...+||+|++ ++++|+|+.+|++.. . +
T Consensus 128 ~~e~tvg~iMt~~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~~-----~~l~GvV~l~dLl~a---~-----~- 193 (449)
T TIGR00400 128 YSDDSAGRIMTIEYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNES-----KHLKGVLSIRDLILA---K-----P- 193 (449)
T ss_pred CCcchHHHhCcCceEEECCCCcHHHHHHHHHhcCCCccceeEEEEECCC-----CeEEEEEEHHHHhcC---C-----C-
Confidence 34568999999999999999999999999975 334568888886 899999999998421 0 0
Q ss_pred CCCCcccccchhhhhhccCCCCCCCccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecC
Q 003801 669 PTVNDAFSQFSAVDFAKRGSGNGDKIEDIELSEEEMEMYVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKI 748 (794)
Q Consensus 669 ~~~~~~~~~~~~~d~~~~~~~~~~~i~di~~~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~ 748 (794)
...++++|+++++++++++++.++.+.|++++...+||||+
T Consensus 194 --------------------------------------~~~v~~im~~~~~~v~~~~~~~eal~~m~~~~~~~lpVVD~- 234 (449)
T TIGR00400 194 --------------------------------------EEILSSIMRSSVFSIVGVNDQEEVARLIQKYDFLAVPVVDN- 234 (449)
T ss_pred --------------------------------------CCcHHHHhCCCCeeECCCCCHHHHHHHHHHcCCCEEeEEcC-
Confidence 01356788888999999999999999999999999999998
Q ss_pred CCCCcEEEEEecccccHHHHHhcCccc
Q 003801 749 SNGSPVMGILTRHDFMPEHILALNPLL 775 (794)
Q Consensus 749 ~~~g~vvGIITr~Dll~~~~~~~~~~l 775 (794)
+|+++|+||++|+++...++..++.
T Consensus 235 --~g~lvGiIt~~Dil~~l~~~~~ed~ 259 (449)
T TIGR00400 235 --EGRLVGIVTVDDIIDVIQSEATEDF 259 (449)
T ss_pred --CCeEEEEEEHHHHHHHHHhhhHHHH
Confidence 8899999999999988776554443
No 81
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=99.20 E-value=9.3e-11 Score=107.59 Aligned_cols=109 Identities=17% Similarity=0.268 Sum_probs=88.1
Q ss_pred ceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCCCCCcccccchhhhhhc
Q 003801 606 PLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNPTVNDAFSQFSAVDFAK 685 (794)
Q Consensus 606 ~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~d~~~ 685 (794)
++.++++++++.++.+.|.+.+++.+||+|+. ++.++++|+++.+|+... .. .
T Consensus 3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~--~~~~~~~G~v~~~dl~~~-~~-~----------------------- 55 (114)
T cd04602 3 DPSVLSPDHTVADVLEIKEKKGFSGIPVTEDG--KSGGKLLGIVTSRDIDFL-TD-S----------------------- 55 (114)
T ss_pred CCeEcCCCCCHHHHHHHHHHcCCCceEEeeCC--CcCCEEEEEEEhHHhhhh-hc-c-----------------------
Confidence 45688999999999999998888999999971 001899999999998532 10 0
Q ss_pred cCCCCCCCccccccchhhhhcccccccccccCCceecC--CCCHHHHHHHHHHcCCCEEEEeecCCCCCcEEEEEecccc
Q 003801 686 RGSGNGDKIEDIELSEEEMEMYVDLHPFANASPYTVVE--TMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHDF 763 (794)
Q Consensus 686 ~~~~~~~~i~di~~~~~~~~~~idl~~im~~~p~tV~~--~~sL~~a~~lf~~~glr~LpVVd~~~~~g~vvGIITr~Dl 763 (794)
..+++++|.+.+.++.. ++++.+++++|++.+.+++||+|+ +++++|+||++|+
T Consensus 56 ---------------------~~~v~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~~---~~~~~Gvit~~di 111 (114)
T cd04602 56 ---------------------ETPLSEVMTPREVLVVAPTGITLEEANEILRESKKGKLPIVND---DGELVALVTRSDL 111 (114)
T ss_pred ---------------------CCCHHHhcCCCceEEECCCCCCHHHHHHHHHhcCCCceeEECC---CCeEEEEEEHHHh
Confidence 01245677777777766 999999999999999999999997 7899999999998
Q ss_pred cH
Q 003801 764 MP 765 (794)
Q Consensus 764 l~ 765 (794)
++
T Consensus 112 ~~ 113 (114)
T cd04602 112 KK 113 (114)
T ss_pred hc
Confidence 74
No 82
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=99.20 E-value=1.3e-10 Score=107.28 Aligned_cols=120 Identities=18% Similarity=0.197 Sum_probs=94.2
Q ss_pred ceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCCCCCcccccchhhhhhc
Q 003801 606 PLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNPTVNDAFSQFSAVDFAK 685 (794)
Q Consensus 606 ~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~d~~~ 685 (794)
++.++++++++.++.+.|.+.+++.+||+|+ ++++|++++.|+............. .+.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~------~~~~G~i~~~~l~~~~~~~~~~~~~-------------~~~-- 60 (122)
T cd04585 2 NPITVTPDTSLMEALKLMKENSIRRLPVVDR------GKLVGIVTDRDLKLASPSKATTLDI-------------WEL-- 60 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHhCCcceeeEecC------CeEEEEEeHHHHHHhhhcccccccc-------------hhh--
Confidence 4678899999999999999999999999987 6899999999997654321100000 000
Q ss_pred cCCCCCCCccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCcEEEEEecccccH
Q 003801 686 RGSGNGDKIEDIELSEEEMEMYVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHDFMP 765 (794)
Q Consensus 686 ~~~~~~~~i~di~~~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~vvGIITr~Dll~ 765 (794)
.. .....++.++|++++.++.+++++.++++.|.+.+.+.+||+|+ +|+++|+||++|+++
T Consensus 61 ------------~~----~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~---~~~~~Gvvt~~di~~ 121 (122)
T cd04585 61 ------------YY----LLSKIKVSDIMTRDPITVSPDASVEEAAELMLERKISGLPVVDD---QGRLVGIITESDLFR 121 (122)
T ss_pred ------------hh----hhcccCHHHhccCCCeEeCCCCcHHHHHHHHHHcCCCceeEECC---CCcEEEEEEHHHhhh
Confidence 00 00124567788889999999999999999999999999999997 689999999999975
No 83
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=99.19 E-value=7e-11 Score=135.93 Aligned_cols=117 Identities=20% Similarity=0.193 Sum_probs=102.0
Q ss_pred ceeccccccceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCCCCCcccc
Q 003801 597 LTVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNPTVNDAFS 676 (794)
Q Consensus 597 l~v~diM~~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~~~~~~~~ 676 (794)
..++|+|.++++++++++++.++.+.|++++++.+||+|++ ++++|+|+.+|+.... . .
T Consensus 87 k~~~dim~~~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~~-----g~lvGiVt~~DL~~~~---~----~--------- 145 (486)
T PRK05567 87 KRSESGVVTDPVTVTPDTTLAEALALMARYGISGVPVVDEN-----GKLVGIITNRDVRFET---D----L--------- 145 (486)
T ss_pred hhhhhcccCCCeEeCCCCCHHHHHHHHHHhCCCEEEEEccC-----CEEEEEEEHHHhhhcc---c----C---------
Confidence 45788999999999999999999999999999999999987 8999999999994310 0 0
Q ss_pred cchhhhhhccCCCCCCCccccccchhhhhcccccccccc-cCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCcEE
Q 003801 677 QFSAVDFAKRGSGNGDKIEDIELSEEEMEMYVDLHPFAN-ASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVM 755 (794)
Q Consensus 677 ~~~~~d~~~~~~~~~~~i~di~~~~~~~~~~idl~~im~-~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~vv 755 (794)
..++.++|+ ++++++++++++.++.++|.+.+.+.+||+|+ +|+++
T Consensus 146 ------------------------------~~~V~dim~~~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe---~g~lv 192 (486)
T PRK05567 146 ------------------------------SQPVSEVMTKERLVTVPEGTTLEEALELLHEHRIEKLPVVDD---NGRLK 192 (486)
T ss_pred ------------------------------CCcHHHHcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcC---CCcEE
Confidence 113566777 67889999999999999999999999999998 89999
Q ss_pred EEEecccccHHH
Q 003801 756 GILTRHDFMPEH 767 (794)
Q Consensus 756 GIITr~Dll~~~ 767 (794)
|+||++|+++..
T Consensus 193 GiIT~~DLl~~~ 204 (486)
T PRK05567 193 GLITVKDIEKAE 204 (486)
T ss_pred EEEEhHHhhhhh
Confidence 999999999864
No 84
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=99.19 E-value=1.7e-10 Score=104.76 Aligned_cols=109 Identities=21% Similarity=0.295 Sum_probs=91.2
Q ss_pred ceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCCCCCcccccchhhhhhc
Q 003801 606 PLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNPTVNDAFSQFSAVDFAK 685 (794)
Q Consensus 606 ~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~d~~~ 685 (794)
++.++++++++.++.+.|.+.+++.+||+|+ ++++|+++++|+.........
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~------~~~~G~v~~~dl~~~~~~~~~---------------------- 53 (111)
T cd04612 2 DVVTVPVDLTVDEVLALMFGERHRGYPVVDD------GRLVGIVTLADIRRVPAEGRE---------------------- 53 (111)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcceEeeC------CeEEEEEEHHHHHHHHhcCcc----------------------
Confidence 5678999999999999999888999999987 689999999999764322110
Q ss_pred cCCCCCCCccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCcEEEEEecccccH
Q 003801 686 RGSGNGDKIEDIELSEEEMEMYVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHDFMP 765 (794)
Q Consensus 686 ~~~~~~~~i~di~~~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~vvGIITr~Dll~ 765 (794)
...++.++|.+++.++.+++++.++.+.|.+.+.+++||+|+ +++++|+||++|+++
T Consensus 54 --------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~---~~~~~G~it~~di~~ 110 (111)
T cd04612 54 --------------------ATVLVGDVMTRDPVTASPDETLRDALKRMAERDIGRLPVVDD---SGRLVGIVSRSDLLR 110 (111)
T ss_pred --------------------cccCHHHhccCCCeEECCCCCHHHHHHHHHhCCCCeeeEEcC---CCCEEEEEEHHHhhh
Confidence 002345567788899999999999999999999999999987 789999999999975
No 85
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.19 E-value=1e-10 Score=107.16 Aligned_cols=114 Identities=16% Similarity=0.234 Sum_probs=90.5
Q ss_pred ceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCCCCCcccccchhhhhhc
Q 003801 606 PLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNPTVNDAFSQFSAVDFAK 685 (794)
Q Consensus 606 ~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~d~~~ 685 (794)
+++++++++++.++.+.|++.+.+.+||+|++ ++++|+++.+|+...+.... .. ...++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~-----~~~~Giv~~~dl~~~~~~~~-~~-------------~~~~~-- 60 (116)
T cd04643 2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDKE-----GKYVGTISLTDILWKLKGLE-NL-------------DLERL-- 60 (116)
T ss_pred CcEEECCCCcHHHHHHHHHHCCCceeeeECCC-----CcEEEEEeHHHHHHHhhccC-ch-------------hHHHH--
Confidence 46789999999999999999999999999986 89999999999976543211 00 00000
Q ss_pred cCCCCCCCccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCcEEEEEecccccH
Q 003801 686 RGSGNGDKIEDIELSEEEMEMYVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHDFMP 765 (794)
Q Consensus 686 ~~~~~~~~i~di~~~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~vvGIITr~Dll~ 765 (794)
....+.++|++.+.++.+++++.+++++|.+.+ .+||+|+ +++++|+||++|+++
T Consensus 61 --------------------~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~--~~~Vv~~---~~~~~Gvit~~dil~ 115 (116)
T cd04643 61 --------------------VDLKVIDVMNTDVPVIIDDADIEEILHLLIDQP--FLPVVDD---DGIFIGIITRREILK 115 (116)
T ss_pred --------------------hCCcHHHHhcCCCceecCCCCHHHHHHHHhcCC--ceeEEeC---CCeEEEEEEHHHhhc
Confidence 012356778888999999999999999998865 5999997 789999999999975
No 86
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.19 E-value=1.1e-10 Score=104.93 Aligned_cols=103 Identities=18% Similarity=0.262 Sum_probs=87.9
Q ss_pred ceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCCCCCcccccchhhhhhc
Q 003801 606 PLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNPTVNDAFSQFSAVDFAK 685 (794)
Q Consensus 606 ~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~d~~~ 685 (794)
++.++++++++.++.+.|++.+++.+||+|+ ++++|+++.+|+.....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~------~~~~Giv~~~~l~~~~~-------------------------- 49 (105)
T cd04599 2 DPITIDPLDSVGRAARLMEKHRIGGLPVVED------GKLVGIITSRDVRRAHP-------------------------- 49 (105)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEEEC------CEEEEEEehHHhhcccc--------------------------
Confidence 4667899999999999999888899999984 79999999999954210
Q ss_pred cCCCCCCCccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCcEEEEEecccccH
Q 003801 686 RGSGNGDKIEDIELSEEEMEMYVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHDFMP 765 (794)
Q Consensus 686 ~~~~~~~~i~di~~~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~vvGIITr~Dll~ 765 (794)
...+.++|++++.++++++++.++++.|.+.+.+++||+|+ |+++|+||++|++.
T Consensus 50 ---------------------~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~----~~~~G~it~~~l~~ 104 (105)
T cd04599 50 ---------------------NRLVADAMTREVVTISPEASLLEAKRLMEEKKIERLPVLRE----RKLVGIITKGTIAL 104 (105)
T ss_pred ---------------------cCCHHHHccCCCEEECCCCCHHHHHHHHHHcCCCEeeEEEC----CEEEEEEEHHHhcc
Confidence 01245677788999999999999999999999999999984 78999999999974
No 87
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=99.19 E-value=2e-10 Score=104.24 Aligned_cols=100 Identities=42% Similarity=0.705 Sum_probs=87.4
Q ss_pred cceeEEeccccHHHHHHHHhcCCCCeeEEeeC---CCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCCCCCcccccchhh
Q 003801 605 APLQLFHGIEKAGNVVHVLRTTRHNGFPVIDE---NPLSETPILYGLILRAHLITLLKKKAFLPTPNPTVNDAFSQFSAV 681 (794)
Q Consensus 605 ~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~---~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~ 681 (794)
+.+..+++++++.++.+.+.+.+++.+||+|+ + ++++|+|+++|+.....+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~-----~~~~G~v~~~dl~~~~~~--------------------- 55 (105)
T cd04591 2 PLVVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEES-----PRLVGYILRSQLVVALKN--------------------- 55 (105)
T ss_pred CceEEecccccHHHHHHHHHhCCCCCcceEcCCCCC-----CEEEEEEeHHHHHHHHHH---------------------
Confidence 34678899999999999999999999999987 4 799999999999553210
Q ss_pred hhhccCCCCCCCccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCcEEEEEecc
Q 003801 682 DFAKRGSGNGDKIEDIELSEEEMEMYVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRH 761 (794)
Q Consensus 682 d~~~~~~~~~~~i~di~~~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~vvGIITr~ 761 (794)
+|.+++.++++++++.++.++|.+.+.+++||++ +|+++|+||++
T Consensus 56 -------------------------------~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVv~----~~~~~Gvvt~~ 100 (105)
T cd04591 56 -------------------------------YIDPSPFTVSPRTSLEKVHQLFRKLGLRHLLVVD----EGRLVGIITRK 100 (105)
T ss_pred -------------------------------hccCCCceECCCCcHHHHHHHHHHcCCCEEEEEE----CCeEEEEEEhh
Confidence 5667788999999999999999999999999996 58999999999
Q ss_pred cccH
Q 003801 762 DFMP 765 (794)
Q Consensus 762 Dll~ 765 (794)
|+++
T Consensus 101 dl~~ 104 (105)
T cd04591 101 DLLK 104 (105)
T ss_pred hhhc
Confidence 9975
No 88
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=99.19 E-value=1.9e-10 Score=104.63 Aligned_cols=109 Identities=18% Similarity=0.304 Sum_probs=90.6
Q ss_pred ceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCCCCCcccccchhhhhhc
Q 003801 606 PLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNPTVNDAFSQFSAVDFAK 685 (794)
Q Consensus 606 ~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~d~~~ 685 (794)
++.+++++.+++++.+.|.+.+++.+||+|+ ++++|+|+.+++...+......
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~------~~~~G~v~~~~l~~~~~~~~~~--------------------- 54 (111)
T cd04800 2 PPVTCSPDTTIREAARLMTEHRVSSLLVVDD------GRLVGIVTDRDLRNRVVAEGLD--------------------- 54 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEEEC------CEEEEEEEhHHHHHHHhccCCC---------------------
Confidence 5678899999999999999888899999987 6899999999997644321100
Q ss_pred cCCCCCCCccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCcEEEEEecccccH
Q 003801 686 RGSGNGDKIEDIELSEEEMEMYVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHDFMP 765 (794)
Q Consensus 686 ~~~~~~~~i~di~~~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~vvGIITr~Dll~ 765 (794)
...++.++|++++.++++++++.++.+.|.+.+.+++||+|+ |+++|+||++|+++
T Consensus 55 --------------------~~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~----~~~~Giit~~di~~ 110 (111)
T cd04800 55 --------------------PDTPVSEVMTAPPITIPPDATVFEALLLMLERGIHHLPVVDD----GRLVGVISATDLLR 110 (111)
T ss_pred --------------------ccCCHHHHhCCCCeEECCCCcHHHHHHHHHHcCCCeeeEeEC----CEEEEEEEHHHhhc
Confidence 012356678888999999999999999999999999999984 78999999999974
No 89
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=99.18 E-value=1e-10 Score=106.03 Aligned_cols=107 Identities=17% Similarity=0.198 Sum_probs=89.0
Q ss_pred cceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCCCCCcccccchhhhhh
Q 003801 605 APLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNPTVNDAFSQFSAVDFA 684 (794)
Q Consensus 605 ~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~d~~ 684 (794)
+++.++++++++.++.+.|.+.+++.+||+|++ ++++|+++.+++.... . .
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~-----~~~~G~v~~~~l~~~~---~----~----------------- 52 (110)
T cd04601 2 RDPITVSPDATVAEALELMAEYGISGLPVVDDD-----GKLVGIVTNRDLRFET---D----L----------------- 52 (110)
T ss_pred CCCeEeCCCCcHHHHHHHHHHcCCceEEEEcCC-----CEEEEEEEhhHeeecc---c----C-----------------
Confidence 356788999999999999998999999999986 8999999999884210 0 0
Q ss_pred ccCCCCCCCccccccchhhhhcccccccccccCCceecC-CCCHHHHHHHHHHcCCCEEEEeecCCCCCcEEEEEecccc
Q 003801 685 KRGSGNGDKIEDIELSEEEMEMYVDLHPFANASPYTVVE-TMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHDF 763 (794)
Q Consensus 685 ~~~~~~~~~i~di~~~~~~~~~~idl~~im~~~p~tV~~-~~sL~~a~~lf~~~glr~LpVVd~~~~~g~vvGIITr~Dl 763 (794)
...+.++|++.+.++.+ ++++.+++++|++.+.+.+||+|+ +++++|+||++|+
T Consensus 53 ----------------------~~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~---~~~~~Gvi~~~di 107 (110)
T cd04601 53 ----------------------DKPVSEVMTPENLLTTVEGTSLEEALELLHEHKIEKLPVVDD---EGKLKGLITVKDI 107 (110)
T ss_pred ----------------------CCCHHHhcccCceEEecCCCCHHHHHHHHHHhCCCeeeEEcC---CCCEEEEEEhhhh
Confidence 11345677776777777 999999999999999999999997 7899999999999
Q ss_pred cH
Q 003801 764 MP 765 (794)
Q Consensus 764 l~ 765 (794)
++
T Consensus 108 l~ 109 (110)
T cd04601 108 EK 109 (110)
T ss_pred hc
Confidence 75
No 90
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.18 E-value=1.5e-10 Score=110.19 Aligned_cols=133 Identities=17% Similarity=0.150 Sum_probs=95.3
Q ss_pred ceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCCCCCcccccchhhhhhc
Q 003801 606 PLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNPTVNDAFSQFSAVDFAK 685 (794)
Q Consensus 606 ~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~d~~~ 685 (794)
++.++++++++.++++.|.+.+++.+||+|++ ++++|+|+..|++..+......... ..+ ..+..
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~~-----~~~~Giv~~~dl~~~~~~~~~~~~~---------~~~-~~~~~ 66 (135)
T cd04621 2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDDN-----GKPVGVITYRDLAFAEFEDNERGLP---------KKS-IKMKR 66 (135)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCCcceEECCC-----CCEEEEEeHHHHHHHhhcccccccc---------hhh-hhhhh
Confidence 45678999999999999999999999999987 8999999999998765422100000 000 00000
Q ss_pred cCCCCCCCccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCcEEEEEecccccH
Q 003801 686 RGSGNGDKIEDIELSEEEMEMYVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHDFMP 765 (794)
Q Consensus 686 ~~~~~~~~i~di~~~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~vvGIITr~Dll~ 765 (794)
..... ++.. . .....+++++|++++.++.+++++.++.+.|.+.+.+++||+|+ ++++|+||++|+++
T Consensus 67 ~~~~~----~~~~--~--~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~----~~~~Gvit~~di~~ 134 (135)
T cd04621 67 KAGQK----RYRY--V--KEVPLVAEDIMTEEIITVSPNDDVVDAAKLMLEANISGLPVVDN----DNIVGVITKTDICR 134 (135)
T ss_pred hcccc----cccc--c--ccccccHHHhcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEeC----CEEEEEEEHHHHhh
Confidence 00000 0000 0 00123467888888899999999999999999999999999984 78999999999875
No 91
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.18 E-value=8.2e-11 Score=110.15 Aligned_cols=117 Identities=13% Similarity=0.148 Sum_probs=87.3
Q ss_pred ceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCCCCCcccccchhhhhhc
Q 003801 606 PLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNPTVNDAFSQFSAVDFAK 685 (794)
Q Consensus 606 ~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~d~~~ 685 (794)
++.++++++++.++++.|.+.+.+.+||+|++ ++++|+++..|+......+.......
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~-----~~~~Giv~~~dl~~~~~~~~~~~~~~----------------- 59 (126)
T cd04640 2 KPIVIPADTSIDEALELMIKHGVRLLLVVDSD-----DNFIGVITAVDLLGEEPIKRIQEGGI----------------- 59 (126)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCcEEEEEcCC-----CcEEEEEEHHHHhhChhhHHHHHcCC-----------------
Confidence 45688999999999999998888999999986 79999999999975211000000000
Q ss_pred cCCCCCCCccccccchhhhhcccccccccccCCcee------cCCCCHHHHHHHHHHcCCCEEEEeecCCCC-CcEEEEE
Q 003801 686 RGSGNGDKIEDIELSEEEMEMYVDLHPFANASPYTV------VETMSLAKALILFREVGLRHLLVIPKISNG-SPVMGIL 758 (794)
Q Consensus 686 ~~~~~~~~i~di~~~~~~~~~~idl~~im~~~p~tV------~~~~sL~~a~~lf~~~glr~LpVVd~~~~~-g~vvGII 758 (794)
.....+++++|++++..+ .+++++.++++.|.+.+.+++||+|+ + |+++|+|
T Consensus 60 ------------------~~~~~~v~~im~~~~~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~---~~~~~~G~i 118 (126)
T cd04640 60 ------------------SRSELTVADVMTPKEDLKALDLEELENASVGDVVETLKASGRQHALVVDR---EHHQIRGII 118 (126)
T ss_pred ------------------CchheEHHHhcCchhhhccccHHHhccCcHHHHHHHHHHCCCceEEEEEC---CCCEEEEEE
Confidence 000123456776655433 37899999999999999999999997 5 7899999
Q ss_pred ecccccH
Q 003801 759 TRHDFMP 765 (794)
Q Consensus 759 Tr~Dll~ 765 (794)
|++|+++
T Consensus 119 t~~di~~ 125 (126)
T cd04640 119 STSDIAR 125 (126)
T ss_pred eHHHHhh
Confidence 9999975
No 92
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=99.17 E-value=1.1e-10 Score=136.84 Aligned_cols=164 Identities=13% Similarity=0.154 Sum_probs=115.9
Q ss_pred ceeccccccceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCC----CCCC----
Q 003801 597 LTVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFL----PTPN---- 668 (794)
Q Consensus 597 l~v~diM~~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~----~~~~---- 668 (794)
.+++|+|.++++++++++++.++++.|.+++++.+||+|++ ++++|+|+.+|+...+.+..-. ....
T Consensus 68 ~~V~dim~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-----g~l~Givt~~di~~~~~~~~~~~~~~~~~~t~~~ 142 (546)
T PRK14869 68 PQVRDLEIDKPVTVSPDTSLKEAWNLMDENNVKTLPVVDEE-----GKLLGLVSLSDLARAYMDILDPEILSKSPTSLEN 142 (546)
T ss_pred CcHHHhcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCC-----CEEEEEEEHHHHHHHHHhhcchhhhhhcCCCHHH
Confidence 68999999999999999999999999999999999999987 8999999999998865542210 0000
Q ss_pred ---------C-CCC-cc--cccc-----hhhhh---hccC-----CCC-------------------CCCcc--------
Q 003801 669 ---------P-TVN-DA--FSQF-----SAVDF---AKRG-----SGN-------------------GDKIE-------- 695 (794)
Q Consensus 669 ---------~-~~~-~~--~~~~-----~~~d~---~~~~-----~~~-------------------~~~i~-------- 695 (794)
. ... .. ..++ ..+.+ .++. ..+ ..++.
T Consensus 143 i~~~L~~~~l~~~~~~~~~~~~~~v~a~~~~~~~~~~~~~~lvi~gdr~d~~~~ai~~~~~~lIlt~g~~~~~~v~~la~ 222 (546)
T PRK14869 143 IIRTLDGEVLVGAEEDKVEEGKVVVAAMAPESLLERIEEGDIVIVGDREDIQLAAIEAGVRLLIITGGAPVSEDVLELAK 222 (546)
T ss_pred HHHhcCcEEEecCcccccccccEEEEEcCHHHHHHhccCCCEEEEcCcHHHHHHHHHcCCCEEEECCCCCCCHHHHHHHH
Confidence 0 000 00 0000 00111 1110 000 00100
Q ss_pred -----------ccccchhhhhcccccccccc-cCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCcEEEEEecccc
Q 003801 696 -----------DIELSEEEMEMYVDLHPFAN-ASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHDF 763 (794)
Q Consensus 696 -----------di~~~~~~~~~~idl~~im~-~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~vvGIITr~Dl 763 (794)
|..-+...+.....++++|+ +++.++++++++.++.++|.+.+.+++||+|+ +|+++|+||++|+
T Consensus 223 ~~~i~ii~t~~dt~~t~~~l~~~~~V~~iM~~~~~~~~~~~~~~~~~~~~m~~~~~~~~PVvd~---~g~lvGiit~~dl 299 (546)
T PRK14869 223 ENGVTVISTPYDTFTTARLINQSIPVSYIMTTEDLVTFSKDDYLEDVKEVMLKSRYRSYPVVDE---DGKVVGVISRYHL 299 (546)
T ss_pred hCCCeEEEecccHHHHHHHhhcCCCHHHhccCCCcEEECCCCcHHHHHHHHHhcCCCceEEEcC---CCCEEEEEEHHHh
Confidence 01111223456678999999 89999999999999999999999999999998 8999999999999
Q ss_pred cHHHH
Q 003801 764 MPEHI 768 (794)
Q Consensus 764 l~~~~ 768 (794)
++...
T Consensus 300 ~~~~~ 304 (546)
T PRK14869 300 LSPVR 304 (546)
T ss_pred hcccc
Confidence 98544
No 93
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.17 E-value=3e-10 Score=103.46 Aligned_cols=110 Identities=17% Similarity=0.243 Sum_probs=90.4
Q ss_pred ceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCCCCCcccccchhhhhhc
Q 003801 606 PLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNPTVNDAFSQFSAVDFAK 685 (794)
Q Consensus 606 ~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~d~~~ 685 (794)
++.++++++++.++.+.|.+.+++.+||+|+ ++++|+++..|++..+.......
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~------~~~~G~v~~~dl~~~~~~~~~~~-------------------- 55 (112)
T cd04802 2 NVITVDPDTTVYEAANIMTENNIGRLIVVDN------EKPVGIITERDLVKKVVSRNLKP-------------------- 55 (112)
T ss_pred CcEEECCCCCHHHHHHHHHHCCCCEEEEEEC------CEEEEEEEHHHHHHHHhhccCCc--------------------
Confidence 4677899999999999999989999999986 58999999999977543211000
Q ss_pred cCCCCCCCccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCcEEEEEecccccH
Q 003801 686 RGSGNGDKIEDIELSEEEMEMYVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHDFMP 765 (794)
Q Consensus 686 ~~~~~~~~i~di~~~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~vvGIITr~Dll~ 765 (794)
....+.++|++++.++.+++++.++.++|.+.+.+.+||+|+ + +++|+||++|+++
T Consensus 56 --------------------~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~---~-~~~Gvi~~~di~~ 111 (112)
T cd04802 56 --------------------REVPVGEVMSTPLITIDPNASLNEAAKLMAKHGIKRLPVVDD---D-ELVGIVTTTDIVM 111 (112)
T ss_pred --------------------ccCCHHHhcCCCcEEECCCCCHHHHHHHHHHcCCCeeEEeeC---C-EEEEEEEhhhhhc
Confidence 012345677788889999999999999999999999999986 4 8999999999874
No 94
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=99.17 E-value=1.1e-10 Score=133.94 Aligned_cols=116 Identities=9% Similarity=0.063 Sum_probs=97.1
Q ss_pred ccccceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCCCCCcccccchhh
Q 003801 602 VVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNPTVNDAFSQFSAV 681 (794)
Q Consensus 602 iM~~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~ 681 (794)
.|.++++++++++++.++.+.|.+++++.+||+|++. ..++++|+|+.+|+.... .
T Consensus 105 gmi~dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~--~~GklvGIVT~~DL~~v~---~------------------- 160 (505)
T PLN02274 105 GFVSDPVVKSPSSTISSLDELKASRGFSSVCVTETGT--MGSKLLGYVTKRDWDFVN---D------------------- 160 (505)
T ss_pred cccCCCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCC--cCCeEEEEEEHHHHhhcc---c-------------------
Confidence 3778889999999999999999999999999998720 027999999999994321 0
Q ss_pred hhhccCCCCCCCccccccchhhhhcccccccccccC--CceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCcEEEEEe
Q 003801 682 DFAKRGSGNGDKIEDIELSEEEMEMYVDLHPFANAS--PYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILT 759 (794)
Q Consensus 682 d~~~~~~~~~~~i~di~~~~~~~~~~idl~~im~~~--p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~vvGIIT 759 (794)
....+.++|++. ..++++++++.+++++|.+.+.+.+||||+ +++++|+||
T Consensus 161 ------------------------~~~~V~eIMt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~---~g~LvGvIT 213 (505)
T PLN02274 161 ------------------------RETKLSEVMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNE---DGELVDLVT 213 (505)
T ss_pred ------------------------cCCcHHHHhccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcC---CCeEEEEEE
Confidence 012356778766 679999999999999999999999999997 789999999
Q ss_pred cccccHHHH
Q 003801 760 RHDFMPEHI 768 (794)
Q Consensus 760 r~Dll~~~~ 768 (794)
++|+++...
T Consensus 214 r~DIlk~~~ 222 (505)
T PLN02274 214 RTDVKRVKG 222 (505)
T ss_pred HHHHHHHhh
Confidence 999998654
No 95
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=99.17 E-value=1.1e-10 Score=124.43 Aligned_cols=114 Identities=21% Similarity=0.273 Sum_probs=98.1
Q ss_pred cceeccccccc-eeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCCCCCcc
Q 003801 596 QLTVGDVVTAP-LQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNPTVNDA 674 (794)
Q Consensus 596 ~l~v~diM~~~-vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~~~~~~ 674 (794)
.++++|+|.++ +.++++++++.++.+.|.+.+++.+||+|++ ++++|+|+.+|+.+.+.... .
T Consensus 154 ~~~v~~im~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~-----g~~~Givt~~dl~~~~~~~~----~------- 217 (268)
T TIGR00393 154 LVKVKDLMQTTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDEN-----NQLVGVFTDGDLRRALLGGG----S------- 217 (268)
T ss_pred hhhHHHHhCCCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCC-----CCEEEEEEcHHHHHHHhcCC----c-------
Confidence 47999999988 9999999999999999999999999999987 89999999999977543210 0
Q ss_pred cccchhhhhhccCCCCCCCccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCcE
Q 003801 675 FSQFSAVDFAKRGSGNGDKIEDIELSEEEMEMYVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPV 754 (794)
Q Consensus 675 ~~~~~~~d~~~~~~~~~~~i~di~~~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~v 754 (794)
....++++|.+++.++.+++++.++.++|.+.+.+++||+|+ +|++
T Consensus 218 -------------------------------~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~g~l 263 (268)
T TIGR00393 218 -------------------------------LKSEVRDFMTLGPKTFKLDALLLEALEFLERRKITSLVVVDD---HNKV 263 (268)
T ss_pred -------------------------------ccCcHHHhCCCCCeEECCCCcHHHHHHHHHHcCCcEEEEECC---CCeE
Confidence 012356778888899999999999999999999999999997 7899
Q ss_pred EEEEe
Q 003801 755 MGILT 759 (794)
Q Consensus 755 vGIIT 759 (794)
+|+|+
T Consensus 264 ~GvI~ 268 (268)
T TIGR00393 264 LGVLH 268 (268)
T ss_pred EEEEC
Confidence 99985
No 96
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=99.17 E-value=2.5e-10 Score=103.82 Aligned_cols=109 Identities=18% Similarity=0.303 Sum_probs=89.3
Q ss_pred ceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCCCCCcccccchhhhhhc
Q 003801 606 PLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNPTVNDAFSQFSAVDFAK 685 (794)
Q Consensus 606 ~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~d~~~ 685 (794)
++.+++++++++++.+.|.+.+++.+||+|++ +++++|+++..|+.+...+.. ..
T Consensus 2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~----~~~~~G~v~~~~l~~~~~~~~-~~-------------------- 56 (111)
T cd04590 2 DIVALDADDTLEEILELIAESGHSRFPVYDGD----LDNIIGVVHVKDLLRALAEGE-ED-------------------- 56 (111)
T ss_pred ceEEEcCCCCHHHHHHHHhhCCCceEEEECCC----CceEEEEEEHHHHHHHHHcCC-Cc--------------------
Confidence 56789999999999999999889999999873 168999999999987654211 00
Q ss_pred cCCCCCCCccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCcEEEEEecccccH
Q 003801 686 RGSGNGDKIEDIELSEEEMEMYVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHDFMP 765 (794)
Q Consensus 686 ~~~~~~~~i~di~~~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~vvGIITr~Dll~ 765 (794)
..+.++| +++.++.+++++.++.++|.+.+.+++||+|+ +|+++|+||++|+++
T Consensus 57 ----------------------~~~~~~~-~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~---~~~~~Gvit~~di~~ 110 (111)
T cd04590 57 ----------------------LDLRDLL-RPPLFVPESTPLDDLLEEMRKERSHMAIVVDE---YGGTAGLVTLEDILE 110 (111)
T ss_pred ----------------------CCHHHHh-cCCeecCCCCcHHHHHHHHHhcCCcEEEEEEC---CCCEEEEeEHHHhhc
Confidence 1123334 35678999999999999999999999999997 789999999999975
No 97
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=99.16 E-value=3e-10 Score=103.45 Aligned_cols=109 Identities=17% Similarity=0.244 Sum_probs=90.0
Q ss_pred ceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCCCCCcccccchhhhhhc
Q 003801 606 PLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNPTVNDAFSQFSAVDFAK 685 (794)
Q Consensus 606 ~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~d~~~ 685 (794)
++++++++++++++.+.|.+.+++.+||+|+ +++.|+++.+++...+......
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~------~~~~G~v~~~~l~~~~~~~~~~--------------------- 54 (111)
T cd04589 2 PPLIVDASTSIRDAARLMREHGADALLVRDG------DPRLGIVTRTDLLDAVLLDGLP--------------------- 54 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEecC------CeEEEEEEHHHHHHHHHcCCCC---------------------
Confidence 4567899999999999999888899999987 5789999999997654321100
Q ss_pred cCCCCCCCccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCcEEEEEecccccH
Q 003801 686 RGSGNGDKIEDIELSEEEMEMYVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHDFMP 765 (794)
Q Consensus 686 ~~~~~~~~i~di~~~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~vvGIITr~Dll~ 765 (794)
....+.++|++++..+++++++.++.++|.+.+.+.+||+|+ ++++|+||++|+++
T Consensus 55 --------------------~~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~----~~~~G~it~~dl~~ 110 (111)
T cd04589 55 --------------------SSTPVGEIATFPLITVDPDDFLFNALLLMTRHRIHRVVVREG----GEVVGVLEQTDLLS 110 (111)
T ss_pred --------------------CCCCHHHHhCCCcEEECCCCcHHHHHHHHHHhCccEEEEeeC----CEEEEEEEhHHhhc
Confidence 012345678788899999999999999999999999999984 78999999999875
No 98
>COG0517 FOG: CBS domain [General function prediction only]
Probab=99.16 E-value=4.1e-10 Score=103.27 Aligned_cols=114 Identities=20% Similarity=0.292 Sum_probs=96.9
Q ss_pred ccccccceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCCCCCcccccch
Q 003801 600 GDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNPTVNDAFSQFS 679 (794)
Q Consensus 600 ~diM~~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~ 679 (794)
.++|.++++++.+++++.++...|.++++..+||++. ++++|+++.+|+...+......
T Consensus 2 ~~~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~------~~l~Giit~~di~~~~~~~~~~--------------- 60 (117)
T COG0517 2 KDIMTKDVITVKPDTSVRDALLLMSENGVSAVPVVDD------GKLVGIITERDILRALAAGGKR--------------- 60 (117)
T ss_pred cccccCCCEEECCCCcHHHHHHHHHHcCCCEEEEeeC------CEEEEEEEHHHHHHHHhccCCc---------------
Confidence 3456688999999999999999999999999999987 4899999999998776532100
Q ss_pred hhhhhccCCCCCCCccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHH-cCCCEEEEeecCCCCC-cEEEE
Q 003801 680 AVDFAKRGSGNGDKIEDIELSEEEMEMYVDLHPFANASPYTVVETMSLAKALILFRE-VGLRHLLVIPKISNGS-PVMGI 757 (794)
Q Consensus 680 ~~d~~~~~~~~~~~i~di~~~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~-~glr~LpVVd~~~~~g-~vvGI 757 (794)
...+.++|++++.++.+++++.++.++|.+ .+.+++||+|+ ++ +++|+
T Consensus 61 ---------------------------~~~v~~v~~~~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~---~~~~lvGi 110 (117)
T COG0517 61 ---------------------------LLPVKEVMTKPVVTVDPDTPLEEALELMVERHKIRRLPVVDD---DGGKLVGI 110 (117)
T ss_pred ---------------------------cccHHHhccCCcEEECCCCCHHHHHHHHHHHcCcCeEEEEEC---CCCeEEEE
Confidence 003567788888999999999999999999 69999999997 65 99999
Q ss_pred Eeccccc
Q 003801 758 LTRHDFM 764 (794)
Q Consensus 758 ITr~Dll 764 (794)
+|++|++
T Consensus 111 vt~~di~ 117 (117)
T COG0517 111 ITLSDIL 117 (117)
T ss_pred EEHHHcC
Confidence 9999974
No 99
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=99.15 E-value=3.1e-10 Score=102.25 Aligned_cols=111 Identities=23% Similarity=0.372 Sum_probs=92.9
Q ss_pred ceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCCCCCcccccchhhhhhc
Q 003801 606 PLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNPTVNDAFSQFSAVDFAK 685 (794)
Q Consensus 606 ~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~d~~~ 685 (794)
++.++++++++.++.+.|.+.++..+||+|++ ++++|+++++|+...+.+.....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-----~~~~G~v~~~~l~~~~~~~~~~~-------------------- 56 (113)
T cd02205 2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDDD-----GRLVGIVTERDLLRALAEGGLDP-------------------- 56 (113)
T ss_pred CceEecCCCCHHHHHHHHHhcCCceEEEECCC-----CCEEEEEeHHHHHHHHHhccCCc--------------------
Confidence 46678999999999999999889999999986 79999999999977654321000
Q ss_pred cCCCCCCCccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCcEEEEEecccccH
Q 003801 686 RGSGNGDKIEDIELSEEEMEMYVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHDFMP 765 (794)
Q Consensus 686 ~~~~~~~~i~di~~~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~vvGIITr~Dll~ 765 (794)
...+.++|..++.++++++++.++.+.|.+.+..++||+|+ +++++|++|++|+++
T Consensus 57 ---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~---~~~~~G~i~~~dl~~ 112 (113)
T cd02205 57 ---------------------LVTVGDVMTRDVVTVSPDTSLEEAAELMLEHGIRRLPVVDD---EGRLVGIVTRSDILR 112 (113)
T ss_pred ---------------------cccHHHHhcCCceecCCCcCHHHHHHHHHHcCCCEEEEEcC---CCcEEEEEEHHHhhc
Confidence 01134567778889999999999999999999999999997 799999999999875
No 100
>PRK11573 hypothetical protein; Provisional
Probab=99.15 E-value=2.1e-10 Score=129.08 Aligned_cols=132 Identities=16% Similarity=0.216 Sum_probs=109.0
Q ss_pred cccceecccccc--ceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCCCC
Q 003801 594 MRQLTVGDVVTA--PLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNPTV 671 (794)
Q Consensus 594 l~~l~v~diM~~--~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~~~ 671 (794)
+++.+|+|+|++ ++++++.++++.++.+.+++++|+.+||.+++. +.++|+|+.+|++..+.++. .
T Consensus 184 l~~~~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~----D~IiGiv~~kDll~~~~~~~----~---- 251 (413)
T PRK11573 184 LEKVTVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSL----DDAISMLRVREAYRLMTEKK----E---- 251 (413)
T ss_pred cCCCChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCC----CceEEEEEHHHHHHHhhccC----c----
Confidence 678899999988 899999999999999999999999999998742 78999999999976432210 0
Q ss_pred CcccccchhhhhhccCCCCCCCccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCC
Q 003801 672 NDAFSQFSAVDFAKRGSGNGDKIEDIELSEEEMEMYVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNG 751 (794)
Q Consensus 672 ~~~~~~~~~~d~~~~~~~~~~~i~di~~~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~ 751 (794)
... .++.+++ ++|+.|++++++.++++.|++.+.+...|+|+ .
T Consensus 252 ------~~~---------------------------~~l~~~~-r~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDE---y 294 (413)
T PRK11573 252 ------FTK---------------------------ENMLRAA-DEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDE---Y 294 (413)
T ss_pred ------CCH---------------------------HHHHhhc-cCCeEeCCCCcHHHHHHHHHhcCCeEEEEEec---C
Confidence 000 0122333 56889999999999999999999999999998 8
Q ss_pred CcEEEEEecccccHHHHHhcCcc
Q 003801 752 SPVMGILTRHDFMPEHILALNPL 774 (794)
Q Consensus 752 g~vvGIITr~Dll~~~~~~~~~~ 774 (794)
|...|+||.+|++++...+...+
T Consensus 295 G~~~GiVTleDilEeivGei~de 317 (413)
T PRK11573 295 GDIQGLVTVEDILEEIVGDFTTS 317 (413)
T ss_pred CCeEEEeeHHHHHHHHhCCCCcc
Confidence 99999999999999998776543
No 101
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=99.15 E-value=2.7e-10 Score=103.10 Aligned_cols=109 Identities=17% Similarity=0.248 Sum_probs=88.2
Q ss_pred ceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCCCCCcccccchhhhhhc
Q 003801 606 PLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNPTVNDAFSQFSAVDFAK 685 (794)
Q Consensus 606 ~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~d~~~ 685 (794)
++.++++++++.++.+.|.+.+++.+||+|+ ++++|+++.+|+.+.+..... .
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~------~~~~G~v~~~dl~~~~~~~~~-~-------------------- 54 (110)
T cd04609 2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDD------GRVVGSIDESDLLDALIEGKA-K-------------------- 54 (110)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCceeeEeeC------CeeEEEEeHHHHHHHHhcccc-c--------------------
Confidence 4678899999999999999999999999987 689999999999775532110 0
Q ss_pred cCCCCCCCccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCcEEEEEecccccH
Q 003801 686 RGSGNGDKIEDIELSEEEMEMYVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHDFMP 765 (794)
Q Consensus 686 ~~~~~~~~i~di~~~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~vvGIITr~Dll~ 765 (794)
...++.++|++++.++++++++.++.++|++ . ..+||+|+ +++++|+||++|+++
T Consensus 55 --------------------~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~-~-~~~~vv~~---~~~~~Gvvt~~di~~ 109 (110)
T cd04609 55 --------------------FSLPVREVMGEPLPTVDPDAPIEELSELLDR-G-NVAVVVDE---GGKFVGIITRADLLK 109 (110)
T ss_pred --------------------cCcCHHHHhcCCCceeCCCCcHHHHHHHHHh-C-CceeEEec---CCeEEEEEeHHHhhc
Confidence 0123456777888899999999999999998 3 45889987 789999999999986
Q ss_pred H
Q 003801 766 E 766 (794)
Q Consensus 766 ~ 766 (794)
+
T Consensus 110 ~ 110 (110)
T cd04609 110 Y 110 (110)
T ss_pred C
Confidence 3
No 102
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.14 E-value=4.1e-10 Score=102.60 Aligned_cols=110 Identities=16% Similarity=0.242 Sum_probs=87.9
Q ss_pred ceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCCCCCcccccchhhhhhc
Q 003801 606 PLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNPTVNDAFSQFSAVDFAK 685 (794)
Q Consensus 606 ~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~d~~~ 685 (794)
++.++++++++.++.+.|.+++.+.++|.++ ++++|+++.+|+.+.+.... .+.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~------~~~~G~v~~~dl~~~~~~~~--~~~------------------ 55 (112)
T cd04625 2 TIYTVAPETLLSEAVATMAEQDLGSLVVMER------GELVGLLTFREVLQAMAQHG--AGV------------------ 55 (112)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCeEEEeeC------CEEEEEEEHHHHHHHHHhcC--Cch------------------
Confidence 4678899999999999998877777766654 79999999999976543210 000
Q ss_pred cCCCCCCCccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCcEEEEEecccccH
Q 003801 686 RGSGNGDKIEDIELSEEEMEMYVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHDFMP 765 (794)
Q Consensus 686 ~~~~~~~~i~di~~~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~vvGIITr~Dll~ 765 (794)
....+.++|++.+.++++++++.+++++|.+.+.+.+||+| +++++|+||++|+++
T Consensus 56 --------------------~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~----~~~~~Gvvt~~dl~~ 111 (112)
T cd04625 56 --------------------LDTTVRAIMNPEPIVASPDDSIDEVRRLMVERHLRYLPVLD----GGTLLGVISFHDVAK 111 (112)
T ss_pred --------------------hcCCHHHHhCCCCeEECCCCCHHHHHHHHHHcCCCeeeEEE----CCEEEEEEEHHHhhc
Confidence 01235567778888999999999999999999999999998 478999999999975
No 103
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.12 E-value=3.4e-10 Score=102.16 Aligned_cols=105 Identities=20% Similarity=0.376 Sum_probs=89.4
Q ss_pred cceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCCCCCcccccchhhhhh
Q 003801 605 APLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNPTVNDAFSQFSAVDFA 684 (794)
Q Consensus 605 ~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~d~~ 684 (794)
+++.+++.+.+++++.+.|.+.+++.+||+|+ ++++|+++..++... . .
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~------~~~~g~v~~~~l~~~----~----~----------------- 50 (107)
T cd04610 2 RDVITVSPDNTVKDVIKLIKETGHDGFPVVDN------GKVVGIVSARDLLGK----D----P----------------- 50 (107)
T ss_pred CCcEEECCCCcHHHHHHHHHHcCCCeeeEeEC------CEEEEEEEHHHhhcc----C----c-----------------
Confidence 45678999999999999998888889999986 689999999998531 0 0
Q ss_pred ccCCCCCCCccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCcEEEEEeccccc
Q 003801 685 KRGSGNGDKIEDIELSEEEMEMYVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHDFM 764 (794)
Q Consensus 685 ~~~~~~~~~i~di~~~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~vvGIITr~Dll 764 (794)
..++.++|++.+.++.+++++.++.+.|.+.+.+.+||+|+ +|+++|+||++|++
T Consensus 51 ----------------------~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~---~g~~~Gvi~~~di~ 105 (107)
T cd04610 51 ----------------------DETVEEIMSKDLVVAVPEMDIMDAARVMFRTGISKLPVVDE---NNNLVGIITNTDVI 105 (107)
T ss_pred ----------------------cccHHHhCCCCCeEECCCCCHHHHHHHHHHhCCCeEeEECC---CCeEEEEEEHHHhh
Confidence 01255677788899999999999999999999999999997 78999999999997
Q ss_pred H
Q 003801 765 P 765 (794)
Q Consensus 765 ~ 765 (794)
+
T Consensus 106 ~ 106 (107)
T cd04610 106 R 106 (107)
T ss_pred c
Confidence 5
No 104
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.11 E-value=2.6e-10 Score=103.65 Aligned_cols=102 Identities=20% Similarity=0.246 Sum_probs=85.3
Q ss_pred EeccccHHHHHHHHhcCCC-----CeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCCCCCcccccchhhhhh
Q 003801 610 FHGIEKAGNVVHVLRTTRH-----NGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNPTVNDAFSQFSAVDFA 684 (794)
Q Consensus 610 l~~~~sv~~a~~~L~~~~~-----~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~d~~ 684 (794)
+++++++.++.+.|+++++ ..+||+|++ ++++|+|+.+++... . .
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~-----~~~~G~v~~~~l~~~----~----~----------------- 51 (109)
T cd04606 2 VREDWTVGEALEYLRRNADDPETIYYIYVVDEE-----GRLLGVVSLRDLLLA----D----P----------------- 51 (109)
T ss_pred ccccCcHHHHHHHHHhccCcccceeEEEEECCC-----CCEEEEEEHHHHhcC----C----C-----------------
Confidence 5788999999999987773 689999886 899999999988431 0 0
Q ss_pred ccCCCCCCCccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCcEEEEEeccccc
Q 003801 685 KRGSGNGDKIEDIELSEEEMEMYVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHDFM 764 (794)
Q Consensus 685 ~~~~~~~~~i~di~~~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~vvGIITr~Dll 764 (794)
...+.++|++++.++.+++++.++.+.|.+.+.+++||+|+ +++++|+||++|++
T Consensus 52 ----------------------~~~v~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~---~~~~~Gvit~~dll 106 (109)
T cd04606 52 ----------------------DTPVSDIMDTDVISVSADDDQEEVARLFEKYDLLALPVVDE---EGRLVGIITVDDVI 106 (109)
T ss_pred ----------------------cchHHHHhCCCCeEEcCCCCHHHHHHHHHHcCCceeeeECC---CCcEEEEEEhHHhh
Confidence 01245677778889999999999999999999999999997 78999999999998
Q ss_pred HH
Q 003801 765 PE 766 (794)
Q Consensus 765 ~~ 766 (794)
+.
T Consensus 107 ~~ 108 (109)
T cd04606 107 DV 108 (109)
T ss_pred hh
Confidence 64
No 105
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=99.10 E-value=5.5e-10 Score=103.14 Aligned_cols=119 Identities=17% Similarity=0.272 Sum_probs=93.0
Q ss_pred ceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCCCCCcccccchhhhhhc
Q 003801 606 PLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNPTVNDAFSQFSAVDFAK 685 (794)
Q Consensus 606 ~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~d~~~ 685 (794)
++.++++++++.++.+.+.+++++.+||+|++ ++++|+++.+++........ .....
T Consensus 2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~~-----~~~~G~v~~~~l~~~~~~~~-~~~~~----------------- 58 (121)
T cd04584 2 DVVTITPTTTIAEALELMREHKIRHLPVVDEE-----GRLVGIVTDRDLRDASPSPF-TTLSE----------------- 58 (121)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCcccEECCC-----CcEEEEEEHHHHHHHhhhhc-ccchh-----------------
Confidence 46788999999999999999999999999987 89999999999966432210 00000
Q ss_pred cCCCCCCCccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCcEEEEEecccccH
Q 003801 686 RGSGNGDKIEDIELSEEEMEMYVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHDFMP 765 (794)
Q Consensus 686 ~~~~~~~~i~di~~~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~vvGIITr~Dll~ 765 (794)
.+. +.....+++++|++.+.++.+++++.++++.|.+.+..++||+|+ ++++|+||.+|+++
T Consensus 59 ---------~~~-----~~~~~~~v~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~~----~~~~Gvv~~~di~~ 120 (121)
T cd04584 59 ---------HEL-----YLLLKMPVKEIMTKDVITVHPLDTVEEAALLMREHRIGCLPVVED----GRLVGIITETDLLR 120 (121)
T ss_pred ---------hhh-----hhhcCcCHHHHhhCCCeEECCCCcHHHHHHHHHHcCCCeEEEeeC----CEEEEEEEHHHhhc
Confidence 000 000123466778888999999999999999999999999999984 78999999999875
No 106
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=99.10 E-value=6.6e-10 Score=100.23 Aligned_cols=100 Identities=14% Similarity=0.106 Sum_probs=85.5
Q ss_pred eEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCCCCCcccccchhhhhhccC
Q 003801 608 QLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNPTVNDAFSQFSAVDFAKRG 687 (794)
Q Consensus 608 v~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 687 (794)
+++++++++.++.+.|.+.+++.+||+|+ ++++|+++.+|+.....
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~------~~~~G~v~~~~l~~~~~---------------------------- 49 (104)
T cd04594 4 IKVKDYDKVYEAKRIMIENDLLSLPVVDY------NKFLGAVYLKDIENATY---------------------------- 49 (104)
T ss_pred eEECCCCCHHHHHHHHHHcCCcEEEEEEC------CEEEEEEEHHHHhhhcc----------------------------
Confidence 46789999999999999999999999986 68999999999853210
Q ss_pred CCCCCCccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCcEEEEEecccccH
Q 003801 688 SGNGDKIEDIELSEEEMEMYVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHDFMP 765 (794)
Q Consensus 688 ~~~~~~i~di~~~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~vvGIITr~Dll~ 765 (794)
.++.++|.+.+.++++++++.++++.|.+.+.+.+||+| +|+++|+||++|+++
T Consensus 50 --------------------~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~----~~~~iGvit~~dl~~ 103 (104)
T cd04594 50 --------------------GDVVDYIVRGIPYVRLTSTAEEAWEVMMKNKTRWCPVVD----DGKFKGIVTLDSILD 103 (104)
T ss_pred --------------------cchhhhhhcCCcEEcCCCCHHHHHHHHHHcCcceEEEEE----CCEEEEEEEHHHhhc
Confidence 013456777888999999999999999999999999997 478999999999875
No 107
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.09 E-value=6e-10 Score=102.65 Aligned_cols=113 Identities=18% Similarity=0.233 Sum_probs=89.6
Q ss_pred ceeEEeccccHHHHHHHHhcCC-CCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCCCCCcccccchhhhhh
Q 003801 606 PLQLFHGIEKAGNVVHVLRTTR-HNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNPTVNDAFSQFSAVDFA 684 (794)
Q Consensus 606 ~vv~l~~~~sv~~a~~~L~~~~-~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~d~~ 684 (794)
++.++++++++.++.+.|+..+ ++.+||+|+ ++++|+|+.+|+...+.+.. .
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~------~~~~G~v~~~~l~~~~~~~~-~-------------------- 54 (119)
T cd04598 2 PAPTVSPDTTVNDVLERFERDPDLSALAVVDD------GRPVGLIMREALMELLSTPY-G-------------------- 54 (119)
T ss_pred CcCccCCCCcHHHHHHHHHhCCCccEEEEEEC------CeeEEEEEHHHHHHHHhchh-h--------------------
Confidence 4567899999999999998876 889999987 58999999999976543210 0
Q ss_pred ccCCCCCCCccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCCEE---EEeecCCCCCcEEEEEecc
Q 003801 685 KRGSGNGDKIEDIELSEEEMEMYVDLHPFANASPYTVVETMSLAKALILFREVGLRHL---LVIPKISNGSPVMGILTRH 761 (794)
Q Consensus 685 ~~~~~~~~~i~di~~~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~L---pVVd~~~~~g~vvGIITr~ 761 (794)
.+.....++.++|++++.++.+++++.++.++|.+.+.+++ +|+++ +|+++|+||++
T Consensus 55 -----------------~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~---~~~~~Gvvs~~ 114 (119)
T cd04598 55 -----------------RALYGKKPVSEVMDPDPLIVEADTPLEEVSRLATGRDSQNLYDGFIVTE---EGRYLGIGTVK 114 (119)
T ss_pred -----------------HHHHcCCcHHHhcCCCcEEecCCCCHHHHHHHHHcCCcccccccEEEee---CCeEEEEEEHH
Confidence 00001124667888899999999999999999999987544 68887 78999999999
Q ss_pred cccH
Q 003801 762 DFMP 765 (794)
Q Consensus 762 Dll~ 765 (794)
|+++
T Consensus 115 di~~ 118 (119)
T cd04598 115 DLLR 118 (119)
T ss_pred HHhc
Confidence 9875
No 108
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.09 E-value=5.7e-10 Score=103.13 Aligned_cols=119 Identities=16% Similarity=0.236 Sum_probs=92.6
Q ss_pred ceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCCCCCcccccchhhhhhc
Q 003801 606 PLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNPTVNDAFSQFSAVDFAK 685 (794)
Q Consensus 606 ~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~d~~~ 685 (794)
++.++++++++.++.+.|.+.++..+||+|+ ++++|+++.+++...+.... .... .. .
T Consensus 2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~------~~~~G~v~~~~l~~~~~~~~-~~~~--------~~----~--- 59 (121)
T cd04633 2 PVITVSPDDRVSHARRLMLDHDISRLPVIEG------GKLVGIVTEKDIADALRSFR-PLVR--------DR----H--- 59 (121)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeeEEEEC------CEEEEEEchHHHHHhhhhhh-hccc--------ch----h---
Confidence 5678899999999999999888999999986 69999999999976543211 0000 00 0
Q ss_pred cCCCCCCCccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCcEEEEEecccccH
Q 003801 686 RGSGNGDKIEDIELSEEEMEMYVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHDFMP 765 (794)
Q Consensus 686 ~~~~~~~~i~di~~~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~vvGIITr~Dll~ 765 (794)
.+......++.++|++++.++.+++++.++.++|.+.+.+++||+|+ ++++|+||++|+++
T Consensus 60 ---------------~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~----~~~~Gvi~~~dl~~ 120 (121)
T cd04633 60 ---------------QERRIRNLPVSDIMTRPVITIEPDTSVSDVASLMLENNIGGLPVVDD----GKLVGIVTRTDILR 120 (121)
T ss_pred ---------------hhhhhhccCHHHHccCCceEECCCCcHHHHHHHHHHcCCCcccEEEC----CEEEEEEEHHHhhc
Confidence 00000123456778888999999999999999999999999999984 78999999999975
No 109
>PF00654 Voltage_CLC: Voltage gated chloride channel Mutation in several of these channels lead to human disease.; InterPro: IPR001807 Chloride channels (CLCs) constitute an evolutionarily well-conserved family of voltage-gated channels that are structurally unrelated to the other known voltage-gated channels. They are found in organisms ranging from bacteria to yeasts and plants, and also to animals. Their functions in higher animals likely include the regulation of cell volume, control of electrical excitability and trans-epithelial transport []. The first member of the family (CLC-0) was expression-cloned from the electric organ of Torpedo marmorata [], and subsequently nine CLC-like proteins have been cloned from mammals. They are thought to function as multimers of two or more identical or homologous subunits, and they have varying tissue distributions and functional properties. To date, CLC-0, CLC-1, CLC-2, CLC-4 and CLC-5 have been demonstrated to form functional Cl- channels; whether the remaining isoforms do so is either contested or unproven. One possible explanation for the difficulty in expressing activatable Cl- channels is that some of the isoforms may function as Cl- channels of intracellular compartments, rather than of the plasma membrane. However, they are all thought to have a similar transmembrane (TM) topology, initial hydropathy analysis suggesting 13 hydrophobic stretches long enough to form putative TM domains []. Recently, the postulated TM topology has been revised, and it now seems likely that the CLCs have 10 (or possibly 12) TM domains, with both N- and C-termini residing in the cytoplasm []. A number of human disease-causing mutations have been identified in the genes encoding CLCs. Mutations in CLCN1, the gene encoding CLC-1, the major skeletal muscle Cl- channel, lead to both recessively and dominantly-inherited forms of muscle stiffness or myotonia []. Similarly, mutations in CLCN5, which encodes CLC-5, a renal Cl- channel, lead to several forms of inherited kidney stone disease []. These mutations have been demonstrated to reduce or abolish CLC function.; GO: 0005247 voltage-gated chloride channel activity, 0006821 chloride transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2FEC_B 1KPK_F 2EZ0_A 1OTS_A 1OTT_B 2H2S_A 2FED_B 2HTL_A 2HTK_B 3NMO_A ....
Probab=99.06 E-value=3.5e-09 Score=117.44 Aligned_cols=182 Identities=23% Similarity=0.304 Sum_probs=127.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHhhccc--ccCCCHH
Q 003801 96 KWSLCFLIGLIVGLIGFLNNLAVENIAGTKFVVTSNMMLANKFGMAFLSFSIPNLVLTLFASIVTATVAPV--AAGSGIP 173 (794)
Q Consensus 96 ~w~~~~liGv~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~p~--a~GsGip 173 (794)
.+...+++|+++|+++.+|+....++.+++.... +. ....++ .+++.+++.+ ++.++.|+ ..|.|..
T Consensus 163 ~~~~~~llGi~~Gl~g~~f~~~~~~~~~~~~~~~-~~-----~~~~~l----~~~i~gl~~g-~l~~~~p~~~~~g~G~~ 231 (355)
T PF00654_consen 163 ELPLFLLLGIICGLLGALFNRLLRWLRKFFRKLK-RL-----KIPPIL----RPVIGGLVIG-LLAFFFPEGSVLGSGYE 231 (355)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TT-----CHHHHH----HHHHHHHHHH-HHHHSSGG-SGSSSSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cc-----ccchHH----HHHHHHHHHH-HHHHHHhhhcccCCcHH
Confidence 4567889999999999999999988877554431 00 001111 2334445544 44567788 9999999
Q ss_pred HHHHHHcCCCCCCcchh----HHHHHHHHHHHhhhccccccCCchhHHHHHHHHHHHhhccCccccccchhhhcccCCh-
Q 003801 174 EVKAYLNGVDAPGILSF----RTLVIKIIGSISAVSSSLLVGKAGPMVHTGACVASLLGQGGSKKYGLTWKWLRFFKND- 248 (794)
Q Consensus 174 ev~~~lng~~~~~~~~~----~tl~~K~~~~~~sv~sGlsvG~EGP~vhiGa~igs~l~~~~s~~~~l~~~~l~~f~~~- 248 (794)
.++..+++.. ....+ -..+.|++.+.+++++|.+.|.-.|+.-+|+++|..++. ++..+-++
T Consensus 232 ~i~~ll~~~~--~~~~~~~l~~~~~~K~~~t~lt~~~G~~GG~f~Psl~iGa~~G~~~~~-----------~~~~~~~~~ 298 (355)
T PF00654_consen 232 LIQSLLSGSP--PWFSLGSLLLLFLLKFLATALTLGSGAPGGIFFPSLFIGAALGRLFGA-----------LLGSFFPGI 298 (355)
T ss_dssp HHHHHCTT------S-HHHHHHHHHHHHHHHHHHHHTT-BSBSHHHHHHHHHHHHHHHHH-----------HHHHH-GGG
T ss_pred HHHHHHcCCc--chhhHHHHHHHHHHHHHHHHHhcCccCCCCEEccHHHHHHHHHHHHHH-----------HHHhhCCCc
Confidence 9999988631 12233 346789999999999999999999999999999999987 22221111
Q ss_pred --hhhhhHHHHhhhhhhhhhhcccchhHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH
Q 003801 249 --RDRRDFVTCGSAAGIAAAFRAPVGGLLFAIEEMASWWRSALLWRAFFTTAIVAILL 304 (794)
Q Consensus 249 --~~~r~lv~~GaaAGvaaaF~APigGvLFalE~~~~~~~~~~~~~~f~~~~va~~v~ 304 (794)
.+...+..+|++|..+++.|+|+..+++.+|...++ ..+.+.++++++|..+.
T Consensus 299 ~~~~~~~~al~G~~a~~~a~~~~Plt~~vl~~Eltg~~---~~~~p~lia~~~a~~v~ 353 (355)
T PF00654_consen 299 SSVDPGVYALVGMAAFLAAVTRAPLTAIVLVLELTGDF---QLLLPLLIAVAVAYLVA 353 (355)
T ss_dssp -T-SHHHHHHHHTTHHHHHHCS-HHHHHHHHHHHH--G---GGHHHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCH---HHHHHHHHHHHHHHHHh
Confidence 146789999999999999999999999999998743 44455555555555544
No 110
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.06 E-value=1.3e-09 Score=104.55 Aligned_cols=141 Identities=16% Similarity=0.226 Sum_probs=96.4
Q ss_pred ceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCCCCCcccccchhhhhhc
Q 003801 606 PLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNPTVNDAFSQFSAVDFAK 685 (794)
Q Consensus 606 ~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~d~~~ 685 (794)
+++++++++++.++.+.|++++++.+||+|+ ++++|++++.|+...+............+..........++.+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~------~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (143)
T cd04634 2 NPITCNADDTISDAARLLRENKISGAPVLDG------GKLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELPLREFIN 75 (143)
T ss_pred CcEEecCCCCHHHHHHHHHHcCCCcceEeEC------CeEEEEecHHHHHHHHHhccCccccccCCcceeeeccchheee
Confidence 5678999999999999999999999999986 6899999999998776542211100000000000000001100
Q ss_pred cCCCCCCCccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCcEEEEEecccccH
Q 003801 686 RGSGNGDKIEDIELSEEEMEMYVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHDFMP 765 (794)
Q Consensus 686 ~~~~~~~~i~di~~~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~vvGIITr~Dll~ 765 (794)
.++.....++. ...++.++|++.+.++.+++++.++...|.+.+.+++||+++ ++++|+||++|+++
T Consensus 76 --------~~~~~~~~~~~-~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~----~~~~Gvvt~~dl~~ 142 (143)
T cd04634 76 --------WEETKRALTDA-GKMKVRDIMTKKVITISPDASIEDAAELMVRHKIKRLPVVED----GRLVGIVTRGDIIE 142 (143)
T ss_pred --------hHHHHHHHHHH-hcCCHHHHcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC----CEEEEEEEHHHhhc
Confidence 00000000000 134567888899999999999999999999999999999984 78999999999874
No 111
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=99.04 E-value=1.7e-09 Score=122.85 Aligned_cols=131 Identities=21% Similarity=0.309 Sum_probs=109.0
Q ss_pred cccceecccccc--ceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCCCC
Q 003801 594 MRQLTVGDVVTA--PLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNPTV 671 (794)
Q Consensus 594 l~~l~v~diM~~--~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~~~ 671 (794)
+++.+|+++|++ ++.+++.+.++.++.+.+.+++|+.+||.+++ .+.++|+++.+|++..+.+..- .
T Consensus 203 l~~~~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~----~D~iiGiv~~Kdll~~~~~~~~--~----- 271 (429)
T COG1253 203 LDDRTVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGD----LDNIIGIVHVKDLLRALLDGQS--D----- 271 (429)
T ss_pred cCCcEeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCC----CCcEEEEEEHHHHHHHHhcCcc--c-----
Confidence 678999999997 79999999999999999999999999999943 3889999999999876543210 0
Q ss_pred CcccccchhhhhhccCCCCCCCccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCC
Q 003801 672 NDAFSQFSAVDFAKRGSGNGDKIEDIELSEEEMEMYVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNG 751 (794)
Q Consensus 672 ~~~~~~~~~~d~~~~~~~~~~~i~di~~~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~ 751 (794)
.+....+ ++|+.|++++++.++++.|++.+.+...|+|+ .
T Consensus 272 ------------------------------------~~~~~~~-~~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDE---y 311 (429)
T COG1253 272 ------------------------------------LDLRVLV-RPPLFVPETLSLSDLLEEFREERTHMAIVVDE---Y 311 (429)
T ss_pred ------------------------------------cchhhcc-cCCeEecCCCcHHHHHHHHHHhCCeEEEEEEc---C
Confidence 0011111 27889999999999999999999999999998 8
Q ss_pred CcEEEEEecccccHHHHHhcCccc
Q 003801 752 SPVMGILTRHDFMPEHILALNPLL 775 (794)
Q Consensus 752 g~vvGIITr~Dll~~~~~~~~~~l 775 (794)
|.+.|+||.+|++++...+...+.
T Consensus 312 G~~~GlVTleDIiEeIvGei~de~ 335 (429)
T COG1253 312 GGVEGLVTLEDIIEEIVGEIPDEH 335 (429)
T ss_pred CCeEEEeEHHHHHHHHhCCCcCcc
Confidence 999999999999999888655433
No 112
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.03 E-value=5.3e-10 Score=123.96 Aligned_cols=125 Identities=18% Similarity=0.218 Sum_probs=108.3
Q ss_pred cccceeccccccceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCCCCCc
Q 003801 594 MRQLTVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNPTVND 673 (794)
Q Consensus 594 l~~l~v~diM~~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~~~~~ 673 (794)
+-..++.++|+.|.+++++..++.++...|.+.+.+..-|+|++ +.+.||||++|+....-...
T Consensus 146 ~~~trv~~~~~~~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~~-----~~~~GIvT~~dl~~~v~~~g----------- 209 (610)
T COG2905 146 FILTRVGEVKTLPAVTVSPQASIQDAARKMKDEGVSSLVVLDDS-----GPLLGIVTRKDLRSRVIADG----------- 209 (610)
T ss_pred HHHHHHHHHhcCCCcccCccCcHHHHHHHHHhcCCCeEEEEcCC-----CCccceeehHHHHHHHHhcC-----------
Confidence 33457899999999999999999999999999999989899887 88999999999976543211
Q ss_pred ccccchhhhhhccCCCCCCCccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCc
Q 003801 674 AFSQFSAVDFAKRGSGNGDKIEDIELSEEEMEMYVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSP 753 (794)
Q Consensus 674 ~~~~~~~~d~~~~~~~~~~~i~di~~~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~ 753 (794)
.+....++++|+.++++|.+++.+-+|+-+|.+.+++|+||++ +|+
T Consensus 210 ------------------------------~~~~~~V~evmT~p~~svd~~~~~feAml~m~r~~I~hl~V~e----~gq 255 (610)
T COG2905 210 ------------------------------RSKTQKVSEVMTSPVISVDRGDFLFEAMLMMLRNRIKHLPVTE----DGQ 255 (610)
T ss_pred ------------------------------CCcccchhhhhccCceeecCcchHHHHHHHHHHhCCceeeeec----CCe
Confidence 1123457899999999999999999999999999999999998 599
Q ss_pred EEEEEecccccHHHH
Q 003801 754 VMGILTRHDFMPEHI 768 (794)
Q Consensus 754 vvGIITr~Dll~~~~ 768 (794)
++||||.+||++...
T Consensus 256 ~~Gilt~~dIl~l~s 270 (610)
T COG2905 256 PLGILTLTDILRLFS 270 (610)
T ss_pred eeEEeeHHHHHHhhC
Confidence 999999999998554
No 113
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.02 E-value=1.7e-09 Score=97.55 Aligned_cols=104 Identities=22% Similarity=0.311 Sum_probs=87.5
Q ss_pred ceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCCCCCcccccchhhhhhc
Q 003801 606 PLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNPTVNDAFSQFSAVDFAK 685 (794)
Q Consensus 606 ~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~d~~~ 685 (794)
++.++++++++.++.+.+.+.+++.+||+|++ ++++|+++.+++... ..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-----~~~~g~v~~~~l~~~---~~----------------------- 50 (106)
T cd04638 2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVKKS-----GELVGIITRKDLLRN---PE----------------------- 50 (106)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCeEEEEcCC-----CcEEEEEEHHHHHhc---cc-----------------------
Confidence 46788899999999999998899999999986 789999999999531 00
Q ss_pred cCCCCCCCccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCcEEEEEecccccH
Q 003801 686 RGSGNGDKIEDIELSEEEMEMYVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHDFMP 765 (794)
Q Consensus 686 ~~~~~~~~i~di~~~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~vvGIITr~Dll~ 765 (794)
...+.++|++.+.++.+++++.++.++|++.+.+.+||+|+ ++++|+||++|+++
T Consensus 51 ---------------------~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~----~~~~G~it~~d~~~ 105 (106)
T cd04638 51 ---------------------EEQLALLMTRDPPTVSPDDDVKEAAKLMVENNIRRVPVVDD----GKLVGIVTVADIVR 105 (106)
T ss_pred ---------------------cchHHHHhcCCCceECCCCCHHHHHHHHHHcCCCEEEEEEC----CEEEEEEEHHHhhc
Confidence 00134567778889999999999999999999999999984 68999999999875
No 114
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=98.95 E-value=2.2e-09 Score=113.68 Aligned_cols=130 Identities=22% Similarity=0.346 Sum_probs=111.0
Q ss_pred cccceecccccc--ceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCCCC
Q 003801 594 MRQLTVGDVVTA--PLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNPTV 671 (794)
Q Consensus 594 l~~l~v~diM~~--~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~~~ 671 (794)
+++++|+|+|.+ ++..++.+++.+++++.+.++.|+.+||-.++. +..+|+++.+|+++++.++.
T Consensus 197 Le~~tV~DIMvpR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~----DnIiGvlh~r~llr~l~e~~--------- 263 (423)
T COG4536 197 LENLTVSDIMVPRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDL----DNIIGVLHVRDLLRLLNEKN--------- 263 (423)
T ss_pred cccceeeeeeccccceeeecCCCCHHHHHHHHhhCCCCceeeecCCh----hHhhhhhhHHHHHHHhhccC---------
Confidence 689999999987 789999999999999999999999999998763 67999999999999887543
Q ss_pred CcccccchhhhhhccCCCCCCCccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCC
Q 003801 672 NDAFSQFSAVDFAKRGSGNGDKIEDIELSEEEMEMYVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNG 751 (794)
Q Consensus 672 ~~~~~~~~~~d~~~~~~~~~~~i~di~~~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~ 751 (794)
.++-.|+.+ . -..|+.|++++++.+-+..|++.+.|.-.|||+ .
T Consensus 264 -----~~~k~d~~~---------------------------~-a~epyFVPe~Tpl~~QL~~F~~~k~hialVVDE---Y 307 (423)
T COG4536 264 -----EFTKEDILR---------------------------A-ADEPYFVPEGTPLSDQLVAFQRNKKHIALVVDE---Y 307 (423)
T ss_pred -----cccHhHHHH---------------------------H-hcCCeecCCCCcHHHHHHHHHHhcceEEEEEec---c
Confidence 122222221 1 157899999999999999999999999999999 9
Q ss_pred CcEEEEEecccccHHHHHhcC
Q 003801 752 SPVMGILTRHDFMPEHILALN 772 (794)
Q Consensus 752 g~vvGIITr~Dll~~~~~~~~ 772 (794)
|.+.|+||.+|++++...+..
T Consensus 308 G~i~GLVTLEDIlEEIVGdft 328 (423)
T COG4536 308 GDIQGLVTLEDILEEIVGDFT 328 (423)
T ss_pred CcEEeeeeHHHHHHHHhcccc
Confidence 999999999999998877544
No 115
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=98.95 E-value=5.4e-09 Score=99.31 Aligned_cols=116 Identities=10% Similarity=0.087 Sum_probs=79.9
Q ss_pred ceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCCCCCcccccchhhhhhc
Q 003801 606 PLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNPTVNDAFSQFSAVDFAK 685 (794)
Q Consensus 606 ~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~d~~~ 685 (794)
++.++++++++.++++.|.+.+++.+||+|++ ++++|+|+.+|+++.+............+-...+.-...+++
T Consensus 2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~-----g~l~Givt~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~- 75 (133)
T cd04592 2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDSD-----DFLEGILTLGDIQRFLFTNKTTRVQPEDETKQTNTCLVSSVC- 75 (133)
T ss_pred CceEECCCCCHHHHHHHHHHcCCCEEEEECCC-----CeEEEEEEHHHHHHHHhhccccccccchhhcccccccHHHHh-
Confidence 56789999999999999999999999999987 899999999999887654221110000000000000000000
Q ss_pred cCCCCCCCccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeec
Q 003801 686 RGSGNGDKIEDIELSEEEMEMYVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPK 747 (794)
Q Consensus 686 ~~~~~~~~i~di~~~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~ 747 (794)
....+.+.|..++.++++++++.+|+++|.+++.+++||+|+
T Consensus 76 --------------------~~~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~ 117 (133)
T cd04592 76 --------------------TKGISYGGQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKR 117 (133)
T ss_pred --------------------hhhhhhcccCCCCEEECCCCCHHHHHHHHHHcCCCcCCEecC
Confidence 001122334567889999999999999999999999999986
No 116
>COG0038 EriC Chloride channel protein EriC [Inorganic ion transport and metabolism]
Probab=98.95 E-value=2e-08 Score=114.21 Aligned_cols=181 Identities=22% Similarity=0.299 Sum_probs=131.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHhhcccccCCCHHHHH
Q 003801 97 WSLCFLIGLIVGLIGFLNNLAVENIAGTKFVVTSNMMLANKFGMAFLSFSIPNLVLTLFASIVTATVAPVAAGSGIPEVK 176 (794)
Q Consensus 97 w~~~~liGv~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~p~a~GsGipev~ 176 (794)
....+++|++.|+.+.++...+....+++.+ ...+..+. +.+.+++.+ +..++.|+..|.|...+.
T Consensus 235 ~~~~~~lGii~G~~g~~~~~~~~~~~~~~~~----------~~~~~~~~---~~~~g~l~g-~~~l~~P~~lg~G~~~~~ 300 (443)
T COG0038 235 LLLYLVLGIIAGLFGVLLSRLLALSRRFFRR----------LPLPPLLR---PALGGLLVG-ALGLLFPEVLGNGYGLIQ 300 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------CcchHHHH---HHHHHHHHH-HHHHhchhhhCCCccHHH
Confidence 3467889999999998877776544222211 11121222 223334433 555778999999999988
Q ss_pred HHHcCCCCCCcc-hhHHHHHHHHHHHhhhccccccCCchhHHHHHHHHHHHhhccCccccccchhhhcccC-ChhhhhhH
Q 003801 177 AYLNGVDAPGIL-SFRTLVIKIIGSISAVSSSLLVGKAGPMVHTGACVASLLGQGGSKKYGLTWKWLRFFK-NDRDRRDF 254 (794)
Q Consensus 177 ~~lng~~~~~~~-~~~tl~~K~~~~~~sv~sGlsvG~EGP~vhiGa~igs~l~~~~s~~~~l~~~~l~~f~-~~~~~r~l 254 (794)
...++.- ... ..-.++.|++.+.++++||.+.|.--|+.-+|+++|..+++. ... .+. +..+.-.+
T Consensus 301 ~~~~~~~--~~~~l~~l~~~K~l~t~~s~gSG~~GGif~Psl~iGa~lG~~~g~~----~~~------~~~~~~~~~~~~ 368 (443)
T COG0038 301 LALAGEG--GLLVLLLLFLLKLLATLLSYGSGAPGGIFAPSLFIGAALGLAFGAL----LGL------LFPPSILEPGLF 368 (443)
T ss_pred HHHccCc--cHHHHHHHHHHHHHHHHHHHhcCCCcceehHHHHHHHHHHHHHHHH----HHh------hcCccccchHHH
Confidence 8887632 122 355789999999999999999999999999999999999972 111 111 23445579
Q ss_pred HHHhhhhhhhhhhcccchhHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHH
Q 003801 255 VTCGSAAGIAAAFRAPVGGLLFAIEEMASWWRSALLWRAFFTTAIVAILLRA 306 (794)
Q Consensus 255 v~~GaaAGvaaaF~APigGvLFalE~~~~~~~~~~~~~~f~~~~va~~v~~~ 306 (794)
+.+||+|-++++-|+|++++++++|.+..+ ......+.+|.+++.+.+.
T Consensus 369 al~Gm~a~la~~~~aPlta~vlv~EmTg~~---~~~l~ll~a~~ia~~~~~~ 417 (443)
T COG0038 369 ALLGMAAFLAATTRAPLTAIVLVLEMTGNY---QLLLPLLIACLIAYLVSRL 417 (443)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHhCCc---chHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998764 5566677777777776664
No 117
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=98.92 E-value=2e-09 Score=120.59 Aligned_cols=129 Identities=17% Similarity=0.166 Sum_probs=110.3
Q ss_pred ceeccccccceeEEeccccHHHHHHHHhcC-----CCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCCCC
Q 003801 597 LTVGDVVTAPLQLFHGIEKAGNVVHVLRTT-----RHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNPTV 671 (794)
Q Consensus 597 l~v~diM~~~vv~l~~~~sv~~a~~~L~~~-----~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~~~ 671 (794)
-+++.+|+.+.++++++.|++++++.+++. ....++|||++ +++.|+++.++++.. +.
T Consensus 132 ~taG~~Mt~e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~~-----~~L~Gvvsl~~Ll~a---~~--------- 194 (451)
T COG2239 132 DTAGRIMTTEFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDEK-----GKLLGVVSLRDLLTA---EP--------- 194 (451)
T ss_pred hhhhccceeeeEEeccCcCHHHHHHHHHHhcccccccceEEEECCc-----cceEEEeeHHHHhcC---Cc---------
Confidence 479999999999999999999999999843 45678999997 899999999998421 00
Q ss_pred CcccccchhhhhhccCCCCCCCccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCC
Q 003801 672 NDAFSQFSAVDFAKRGSGNGDKIEDIELSEEEMEMYVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNG 751 (794)
Q Consensus 672 ~~~~~~~~~~d~~~~~~~~~~~i~di~~~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~ 751 (794)
...+.++|++.+++|.+++..+++.++|+++++-.+||||+ +
T Consensus 195 -----------------------------------~~~i~~im~~~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~---~ 236 (451)
T COG2239 195 -----------------------------------DELLKDLMEDDVVSVLADDDQEEVARLFEKYDLLAVPVVDE---D 236 (451)
T ss_pred -----------------------------------HhHHHHHhcccceeecccCCHHHHHHHHHHhCCeecceECC---C
Confidence 12367789999999999999999999999999999999998 8
Q ss_pred CcEEEEEecccccHHHHHhcCcccccccc
Q 003801 752 SPVMGILTRHDFMPEHILALNPLLARSRW 780 (794)
Q Consensus 752 g~vvGIITr~Dll~~~~~~~~~~l~~~~~ 780 (794)
++++|+||..|+++...++..++..+..+
T Consensus 237 ~~LiG~itiDDiidvi~eEa~eDi~~~~G 265 (451)
T COG2239 237 NRLIGIITIDDIIDVIEEEATEDILRMAG 265 (451)
T ss_pred CceeeeeeHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999888877666655443
No 118
>PRK03655 putative ion channel protein; Provisional
Probab=98.91 E-value=3.4e-08 Score=111.16 Aligned_cols=172 Identities=15% Similarity=0.119 Sum_probs=122.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHhhcccccCCCHHHH
Q 003801 96 KWSLCFLIGLIVGLIGFLNNLAVENIAGTKFVVTSNMMLANKFGMAFLSFSIPNLVLTLFASIVTATVAPVAAGSGIPEV 175 (794)
Q Consensus 96 ~w~~~~liGv~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~p~a~GsGipev 175 (794)
.|...+++|++.|+++.+|+......+++.... + .+++. ..+.+++.+.+.....|...|+|..++
T Consensus 222 ~~~~~l~lgi~~gl~G~lf~~~~~~~~~~~~~~--------~--~p~~~----~~lgGl~vg~l~l~~~~~~~g~Gy~~i 287 (414)
T PRK03655 222 DILSGAIVAAIAIAAGMVAVWCLPRLHALMHRL--------K--NPVLV----LGIGGFILGILGVIGGPLTLFKGLDEM 287 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------c--cchHH----HHHHHHHHHHHHHHhCCccccCCHHHH
Confidence 355677889999999999987776655433211 0 12221 234445556555555687899999999
Q ss_pred HHHHcCCCCCCcchhHHHHHHHHHHHhhhccccccCCchhHHHHHHHHHHHhhccCccccccchhhhcccCChhhhhhHH
Q 003801 176 KAYLNGVDAPGILSFRTLVIKIIGSISAVSSSLLVGKAGPMVHTGACVASLLGQGGSKKYGLTWKWLRFFKNDRDRRDFV 255 (794)
Q Consensus 176 ~~~lng~~~~~~~~~~tl~~K~~~~~~sv~sGlsvG~EGP~vhiGa~igs~l~~~~s~~~~l~~~~l~~f~~~~~~r~lv 255 (794)
+..+++.+.+-..-.-..+.|++.+.++++||.+.|.-.|+.-+||++|..+++. + ++.+....+
T Consensus 288 ~~~~~~~~~~~~~ll~l~l~K~lat~ls~~sG~~GGiF~PsL~iGA~~G~~~~~l-----------~----p~~~~~~~v 352 (414)
T PRK03655 288 QQMAANQAFSASDYFLLAVVKLAALVVAAASGFRGGRIFPAVFVGVALGLMLHAH-----------V----PAVPAAITV 352 (414)
T ss_pred HHHHhcCCccHHHHHHHHHHHHHHHHHHHccCCCCceehHHHHHHHHHHHHHHHh-----------c----cCCChHHHH
Confidence 9888762222111112457999999999999999999999999999999999871 1 234567789
Q ss_pred HHhhhhhhhhhhc----ccchhHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH
Q 003801 256 TCGSAAGIAAAFR----APVGGLLFAIEEMASWWRSALLWRAFFTTAIVAILL 304 (794)
Q Consensus 256 ~~GaaAGvaaaF~----APigGvLFalE~~~~~~~~~~~~~~f~~~~va~~v~ 304 (794)
+||++|-++++-+ +|+.+++..+|.. ..+.+.++++++.+.
T Consensus 353 ~~~m~a~la~vtr~p~~sp~ta~viv~em~--------~~~l~~~~~~~~~~~ 397 (414)
T PRK03655 353 SCAILGIVLVVTRDGWLSLFMAAVVVPDTT--------LLPLLCIVMLPAWLL 397 (414)
T ss_pred HHHHHHHHHHHhccchhhHHHHHHHHhcch--------HHHHHHHHHHHHHHH
Confidence 9999999999999 6999999999877 233445555555543
No 119
>cd03684 ClC_3_like ClC-3-like chloride channel proteins. This CD includes ClC-3, ClC-4, ClC-5 and ClC-Y1. ClC-3 was initially cloned from rat kidney. Expression of ClC-3 produces outwardly-rectifying Cl currents that are inhibited by protein kinase C activation. It has been suggested that ClC-3 may be a ubiquitous swelling-activated Cl channel that has very similar characteristics to those of native volume-regulated Cl currents. The function of ClC-4 is unclear. Studies of human ClC-4 have revealed that it gives rise to Cl currents that rapidly activate at positive voltages, and are sensitive to extracellular pH, with currents decreasing when pH falls below 6.5. ClC-4 is broadly distributed, especially in brain and heart. ClC-5 is predominantly expressed in the kidney, but can be found in the brain and liver. Mutations in the ClC-5 gene cause certain hereditary diseases, including Dent's disease, an X-chromosome linked syndrome characterised by proteinuria, hypercalciuria, and kidn
Probab=98.89 E-value=2.4e-08 Score=113.87 Aligned_cols=192 Identities=16% Similarity=0.136 Sum_probs=131.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHhhcccccCCCHHHH
Q 003801 96 KWSLCFLIGLIVGLIGFLNNLAVENIAGTKFVVTSNMMLANKFGMAFLSFSIPNLVLTLFASIVTATVAPVAAGSGIPEV 175 (794)
Q Consensus 96 ~w~~~~liGv~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~p~a~GsGipev 175 (794)
.+...+++|+++|+++.+|+....++++++.... .....++. +++.+++.+.+ .++.|...|+|-..+
T Consensus 206 ~l~~~i~lGi~~Gl~g~lf~~~~~~~~~~~~~~~--------~~~~~~~~---~~l~~l~~~~l-~~~~p~~~~~g~~~i 273 (445)
T cd03684 206 ELIPFILLGIFGGLYGAFFIKANIKWARFRKKSL--------LKRYPVLE---VLLVALITALI-SFPNPYTRLDMTELL 273 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------cchhHHHH---HHHHHHHHHHH-HhChHHHccchhhHH
Confidence 4557899999999999999999988877654321 00011111 22334444433 466799999998778
Q ss_pred HHHHcCCCC---------------CC-cch----hHHHHHHHHHHHhhhccccccCCchhHHHHHHHHHHHhhccCcccc
Q 003801 176 KAYLNGVDA---------------PG-ILS----FRTLVIKIIGSISAVSSSLLVGKAGPMVHTGACVASLLGQGGSKKY 235 (794)
Q Consensus 176 ~~~lng~~~---------------~~-~~~----~~tl~~K~~~~~~sv~sGlsvG~EGP~vhiGa~igs~l~~~~s~~~ 235 (794)
+..+++... .. ... .-.++.|++.+.++.++|.+.|.-.|+.-+||++|..++..-+...
T Consensus 274 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~K~~~t~lt~gsG~~GG~f~P~l~iGA~~G~~~g~~~~~~~ 353 (445)
T cd03684 274 ELLFNECEPGDDNSLCCYRDPPAGDGVYKALWSLLLALIIKLLLTIFTFGIKVPAGIFVPSMAVGALFGRIVGILVEQLA 353 (445)
T ss_pred HHHHhcCCCcccccccccccccCCccchhHHHHHHHHHHHHHHHHHHHHcCCCCcceeHHHHHHHHHHhHHHHHHHHHHH
Confidence 777654210 00 111 1246899999999999999999999999999999999986211000
Q ss_pred ccchhhhc---ccC------ChhhhhhHHHHhhhhhhhhhhcccchhHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHH
Q 003801 236 GLTWKWLR---FFK------NDRDRRDFVTCGSAAGIAAAFRAPVGGLLFAIEEMASWWRSALLWRAFFTTAIVAILLRA 306 (794)
Q Consensus 236 ~l~~~~l~---~f~------~~~~~r~lv~~GaaAGvaaaF~APigGvLFalE~~~~~~~~~~~~~~f~~~~va~~v~~~ 306 (794)
.+.. +|. +..+.-.++.+|+||-+|++.|+|+.++++.+|...+ ...+.+.++++.+|..+.+.
T Consensus 354 ----~~~p~~~~~~~~~~~~~~~~~~~~alvGmaa~~a~~~raPlt~ivlv~ElTg~---~~~l~pl~ia~~iA~~vs~~ 426 (445)
T cd03684 354 ----YSYPDSIFFACCTAGPSCITPGLYAMVGAAAFLGGVTRMTVSLVVIMFELTGA---LNYILPLMIAVMVSKWVADA 426 (445)
T ss_pred ----hhCCcccccccccCCCCccCchHHHHHHHHHHhcchhccchhhhheeeeccCC---cccHHHHHHHHHHHHHHHHH
Confidence 0000 010 1133457899999999999999999999999999875 34566777777777776664
No 120
>cd03685 ClC_6_like ClC-6-like chloride channel proteins. This CD includes ClC-6, ClC-7 and ClC-B, C, D in plants. Proteins in this family are ubiquitous in eukarotes and their functions are unclear. They are expressed in intracellular organelles membranes. This family belongs to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. ClC chloride ion channel superfamily perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, and transepithelial transport in animals.
Probab=98.74 E-value=1.5e-07 Score=107.96 Aligned_cols=167 Identities=20% Similarity=0.214 Sum_probs=115.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHhhcccccCCCHHH
Q 003801 95 MKWSLCFLIGLIVGLIGFLNNLAVENIAGTKFVVTSNMMLANKFGMAFLSFSIPNLVLTLFASIVTATVAPVAAGSGIPE 174 (794)
Q Consensus 95 ~~w~~~~liGv~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~p~a~GsGipe 174 (794)
..+...+++|+++|+++.+|+....++++++.... .... ...+...++.+++.+++. + +
T Consensus 275 ~~l~~~illGi~~Gl~g~~f~~~~~~~~~~~~~~~-----~~~~----~~~~l~~~lv~~~~~~~~-~----------~- 333 (466)
T cd03685 275 FELIPFMLIGVIGGLLGALFNHLNHKVTRFRKRIN-----HKGK----LLKVLEALLVSLVTSVVA-F----------P- 333 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----cccc----hhHHHHHHHHHHHHHHHH-H----------H-
Confidence 34567899999999999999999988876543321 0011 111222223333332221 1 0
Q ss_pred HHHHHcCCCCCCcchhHHHHHHHHHHHhhhccccccCCchhHHHHHHHHHHHhhccCccccccchhhhcccCChhhhhhH
Q 003801 175 VKAYLNGVDAPGILSFRTLVIKIIGSISAVSSSLLVGKAGPMVHTGACVASLLGQGGSKKYGLTWKWLRFFKNDRDRRDF 254 (794)
Q Consensus 175 v~~~lng~~~~~~~~~~tl~~K~~~~~~sv~sGlsvG~EGP~vhiGa~igs~l~~~~s~~~~l~~~~l~~f~~~~~~r~l 254 (794)
..-.-.++.|++.+.+++++|.+.|.-.|+.-+||++|..++.. ... +... ...+--.+
T Consensus 334 ------------~~l~~~~~~k~l~t~lt~gsG~~GGif~Psl~iGA~~G~~~g~~----~~~---~~~~--~~~~~~~~ 392 (466)
T cd03685 334 ------------QTLLIFFVLYYFLACWTFGIAVPSGLFIPMILIGAAYGRLVGIL----LGS---YFGF--TSIDPGLY 392 (466)
T ss_pred ------------HHHHHHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHH----HHH---Hccc--cCCCchHH
Confidence 01122457899999999999999999999999999999999862 110 1111 23445679
Q ss_pred HHHhhhhhhhhhhcccchhHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHH
Q 003801 255 VTCGSAAGIAAAFRAPVGGLLFAIEEMASWWRSALLWRAFFTTAIVAILLRA 306 (794)
Q Consensus 255 v~~GaaAGvaaaF~APigGvLFalE~~~~~~~~~~~~~~f~~~~va~~v~~~ 306 (794)
+.+||||-++++.|+|+.++++.+|.+.++ ..+.+.++++++|..+.+.
T Consensus 393 aliGmaa~lag~~raPlt~iviv~ElTg~~---~~l~pl~ia~~iA~~va~~ 441 (466)
T cd03685 393 ALLGAAAFLGGVMRMTVSLTVILLELTNNL---TYLPPIMLVLMIAKWVGDY 441 (466)
T ss_pred HHHHHHHHHhHHhhhhHHHHHHhhhhcCCh---hhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999873 4556666777777666654
No 121
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=98.71 E-value=1.9e-08 Score=100.12 Aligned_cols=133 Identities=20% Similarity=0.324 Sum_probs=110.1
Q ss_pred cccceecccccc--ceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCCCC
Q 003801 594 MRQLTVGDVVTA--PLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNPTV 671 (794)
Q Consensus 594 l~~l~v~diM~~--~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~~~ 671 (794)
...++|+|+|.+ ..++++.+.++.+.+..+.++.|+.|||+.++ .+.+.|++..+||+..+....
T Consensus 64 iadl~vrDiMIPRSQM~~l~~~~~l~~~l~~iiesaHSRfPVi~ed----kD~v~GIL~AKDLL~~~~~~~--------- 130 (293)
T COG4535 64 IADLRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISED----KDHVEGILLAKDLLPFMRSDA--------- 130 (293)
T ss_pred HHHhhHhhhcccHHHheeccccCCHHHHHHHHHHhccccCCcccCC----chhhhhhhhHHHHHHHhcCCc---------
Confidence 357899999987 68899999999999999999999999999875 378999999999988765321
Q ss_pred CcccccchhhhhhccCCCCCCCccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCC
Q 003801 672 NDAFSQFSAVDFAKRGSGNGDKIEDIELSEEEMEMYVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNG 751 (794)
Q Consensus 672 ~~~~~~~~~~d~~~~~~~~~~~i~di~~~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~ 751 (794)
+ ..|++++. ++.+.|+++-.+...++-||....+...|+|+ -
T Consensus 131 ----~------------------------------~F~i~~lL-RPav~VPESKrvd~lLkeFR~~RnHMAIViDE---f 172 (293)
T COG4535 131 ----E------------------------------PFDIKELL-RPAVVVPESKRVDRLLKEFRSQRNHMAIVIDE---F 172 (293)
T ss_pred ----c------------------------------cccHHHhc-ccceecccchhHHHHHHHHHhhcCceEEEEec---c
Confidence 1 12233333 45668999999999999999999999999998 8
Q ss_pred CcEEEEEecccccHHHHHhcCccccc
Q 003801 752 SPVMGILTRHDFMPEHILALNPLLAR 777 (794)
Q Consensus 752 g~vvGIITr~Dll~~~~~~~~~~l~~ 777 (794)
|-+.|.||-+|+++....+...+...
T Consensus 173 GgVsGLVTIEDiLEqIVGdIEDE~De 198 (293)
T COG4535 173 GGVSGLVTIEDILEQIVGDIEDEYDE 198 (293)
T ss_pred CCeeeeEEHHHHHHHHhcccccccch
Confidence 99999999999999888766555443
No 122
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=98.69 E-value=2.1e-08 Score=80.04 Aligned_cols=55 Identities=27% Similarity=0.473 Sum_probs=51.3
Q ss_pred ccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCcEEEEEecccccHHHH
Q 003801 711 HPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHDFMPEHI 768 (794)
Q Consensus 711 ~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~vvGIITr~Dll~~~~ 768 (794)
+++|+++++++++++++.++.+.|++.+.+++||+|+ +++++|+||++|++++..
T Consensus 2 ~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~---~~~~~G~is~~dl~~~l~ 56 (57)
T PF00571_consen 2 GDIMTPPPITVSPDDSLEEALEIMRKNGISRLPVVDE---DGKLVGIISRSDLLKALL 56 (57)
T ss_dssp HHHSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEEST---TSBEEEEEEHHHHHHHHH
T ss_pred eECCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEec---CCEEEEEEEHHHHHhhhh
Confidence 5689999999999999999999999999999999998 899999999999998653
No 123
>cd01036 ClC_euk Chloride channel, ClC. These domains are found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins that perform a variety of functions including cell volume regulation, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles, signal transduction and transepithelial transport. They are also involved in many pathophysiological processes and are responsible for a number of human diseases. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. Some proteins possess long C-terminal cytoplasmic regions containing two CBS (cystathionine beta synthase) domains of putative regulatory function.
Probab=98.65 E-value=3.1e-07 Score=104.02 Aligned_cols=169 Identities=17% Similarity=0.067 Sum_probs=115.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHhhcccccCCCHHHH
Q 003801 96 KWSLCFLIGLIVGLIGFLNNLAVENIAGTKFVVTSNMMLANKFGMAFLSFSIPNLVLTLFASIVTATVAPVAAGSGIPEV 175 (794)
Q Consensus 96 ~w~~~~liGv~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~p~a~GsGipev 175 (794)
.+...+++|+++|+++.+|+....++.+++.+.... .....+ ...+++.+++.+.+. +
T Consensus 235 ~l~~~illGv~~G~~g~~f~~~~~~~~~~~~~~~~~----~~~~~~----~~~~~~~~~i~~~~~-~------------- 292 (416)
T cd01036 235 EFIPTVVIGVICGLLAALFVRLSIIFLRWRRRLLFR----KTARYR----VLEPVLFTLIYSTIH-Y------------- 292 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----cccchh----HHHHHHHHHHHHHHH-H-------------
Confidence 455788999999999999999998887765432110 001111 122333444443332 2
Q ss_pred HHHHcCCCCCCcchhHHHHHHHHHHHhhhccccccCCchhHHHHHHHHHHHhhccCccccccchhhhccc------CChh
Q 003801 176 KAYLNGVDAPGILSFRTLVIKIIGSISAVSSSLLVGKAGPMVHTGACVASLLGQGGSKKYGLTWKWLRFF------KNDR 249 (794)
Q Consensus 176 ~~~lng~~~~~~~~~~tl~~K~~~~~~sv~sGlsvG~EGP~vhiGa~igs~l~~~~s~~~~l~~~~l~~f------~~~~ 249 (794)
.. .-.-.++.|++.+.++.++|.+.|.-.|+.-+||++|..++.. .+. +.+.. ....
T Consensus 293 ~~----------~l~~~~~~K~~~t~~t~~sg~pGG~f~Psl~iGA~~G~~~g~~----~~~---~~~~~~~~~~~~~~~ 355 (416)
T cd01036 293 AP----------TLLLFLLIYFWMSALAFGIAVPGGTFIPSLVIGAAIGRLVGLL----VHR---IAVAGIGAESATLWA 355 (416)
T ss_pred HH----------HHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHH----HHH---HccccccccccCCcc
Confidence 00 1123578899999999999999999999999999999999862 110 11000 0123
Q ss_pred hhhhHHHHhhhhhhhhhhcccchhHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHH
Q 003801 250 DRRDFVTCGSAAGIAAAFRAPVGGLLFAIEEMASWWRSALLWRAFFTTAIVAILLRA 306 (794)
Q Consensus 250 ~~r~lv~~GaaAGvaaaF~APigGvLFalE~~~~~~~~~~~~~~f~~~~va~~v~~~ 306 (794)
+-..+..+|+||-++++.|+|+.++++.+|.+.+ ...+.+.++++++|..+.+.
T Consensus 356 ~~~~~alvGmaa~l~~~~r~Plt~~vi~~ElTg~---~~~l~pl~ia~~ia~~v~~~ 409 (416)
T cd01036 356 DPGVYALIGAAAFLGGTTRLTFSICVIMMELTGD---LHHLLPLMVAILIAKAVADA 409 (416)
T ss_pred ChHHHHHHHHHHHhhhhhcchHhhhhheeeccCC---hhhHHHHHHHHHHHHHHHHh
Confidence 4567999999999999999999999999999876 34455666666666665553
No 124
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=98.61 E-value=9.9e-08 Score=76.16 Aligned_cols=56 Identities=29% Similarity=0.487 Sum_probs=52.6
Q ss_pred eccccccceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHH
Q 003801 599 VGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLK 659 (794)
Q Consensus 599 v~diM~~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~ 659 (794)
|+|+|+++++++++++++.++.+.|++++++.+||+|++ ++++|+|+++|+++.+.
T Consensus 1 v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~-----~~~~G~is~~dl~~~l~ 56 (57)
T PF00571_consen 1 VGDIMTPPPITVSPDDSLEEALEIMRKNGISRLPVVDED-----GKLVGIISRSDLLKALL 56 (57)
T ss_dssp HHHHSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEESTT-----SBEEEEEEHHHHHHHHH
T ss_pred CeECCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecC-----CEEEEEEEHHHHHhhhh
Confidence 579999999999999999999999999999999999987 89999999999988753
No 125
>cd03683 ClC_1_like ClC-1-like chloride channel proteins. This CD includes isoforms ClC-0, ClC-1, ClC-2 and ClC_K. ClC-1 is expressed in skeletal muscle and its mutation leads to both recessively and dominantly-inherited forms of muscle stiffness or myotonia. ClC-K is exclusively expressed in kidney. Similarly, mutation of ClC-K leads to nephrogenic diabetes insipidus in mice and Bartter's syndrome in human. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. This domain is found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins, that perform a variety of functions including cell volume regulation, regulation of intracelluar chloride concentration, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles and transepithelia
Probab=98.51 E-value=9.9e-07 Score=100.18 Aligned_cols=184 Identities=10% Similarity=0.063 Sum_probs=121.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC---Ccch----HHHHHHHHHHHHHHH-hchhhhccCCCCCCCCC
Q 003801 341 VPLVLLLGVVGGILGSLYNFLLDKVLRIYNFINEKG---IAPK----IFLACTISILTSCLL-FGLPWLASCRPCPSDAS 412 (794)
Q Consensus 341 l~~~illGv~~Gl~g~~f~~~~~~~~~~~~~~~~~~---~~~~----~~~~~~~~~~~~~~~-~~~p~~~~c~~~~~~~~ 412 (794)
++..+++|++.|+++.+|....++..+++..+.... .+.+ ++.+++.+++.+.+. ++.|..
T Consensus 2 w~~~~l~gv~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~p~a----------- 70 (426)
T cd03683 2 WLFLALLGILMALISIAMDFAVEKLLNARRWLYSLLTGNSLLQYLVWVAYPVALVLFSALFCKYISPQA----------- 70 (426)
T ss_pred eEeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcc-----------
Confidence 445678999999999999999999888776543221 1111 223333333333333 233322
Q ss_pred CcCCCCCCCCcccccccCCCccchhhhhhcCCcHHHHHhhhccC-CCCchhhHHHHHHHHHHHHHHHHhhcCCCCcccch
Q 003801 413 EACPTIGRSGNYKKFQCAPGYYNDLASLIFNTNDDAIRNLFSKD-TDKEFQHSSMLIFFVTCFSLSVLSYGIVAPAGLFV 491 (794)
Q Consensus 413 ~~~p~~g~~g~~~~~~c~~g~y~~la~l~~~~~~~~i~~lf~~~-~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~ 491 (794)
..+|- ..++...++. .++..++. -+..|++.+.++.|+|.+-|.-.
T Consensus 71 ------~GsGI-----------------------p~v~~~l~g~~~~~~l~~r----~~~~k~i~~~l~i~sG~svGrEG 117 (426)
T cd03683 71 ------VGSGI-----------------------PEMKTILRGVVLPEYLTFK----TLVAKVIGLTCALGSGLPLGKEG 117 (426)
T ss_pred ------CCCCH-----------------------HHHHHHHcCCCccccccHH----HHHHHHHHHHHHHhcCCCCCCCC
Confidence 11121 1122222211 11112222 34679999999999999999999
Q ss_pred HHHHHHHHHhHHHHHHhccc-----cCcchHHHHHHHHhhhhhhhcchhhHHHHHHHHHhC-Cc--chHHHHHHHHHHHH
Q 003801 492 PAIVTGASYGRFVGMLVGSH-----SNLNHGLYAVLGAASFLGGSMRMTVSLCVIILELTN-NL--LLLPMIMLVLLISK 563 (794)
Q Consensus 492 Psl~iGa~~G~l~g~~~~~~-----~~~~~~~~alvGaaa~l~g~~r~pls~~vi~~ElTg-~~--~~l~pimia~~ia~ 563 (794)
|+.-+||+.|..+++..... ...+--.+..+|+||-++++.++|++.+++.+|... ++ ..+.+.++++++|.
T Consensus 118 P~v~iGa~i~~~~~~~~~~~~~~~~~~~~rr~Li~~GaaAGlaAaF~APlaGvlFalE~l~~~~~~~~~~~~~i~s~~a~ 197 (426)
T cd03683 118 PFVHISSIVAALLSKLTTFFSGIYENESRRMEMLAAACAVGVACTFGAPIGGVLFSIEVTSTYFAVRNYWRGFFAATCGA 197 (426)
T ss_pred chHHHHHHHHHHHHhhcccccccccCHHHHHHHHHhHhhhhhHHhcCCcceeeEEEeehhhhhccHHHHHHHHHHHHHHH
Confidence 99999999999999987521 112233588999999999999999999999999764 33 35667778888887
Q ss_pred HHHhh
Q 003801 564 TVADA 568 (794)
Q Consensus 564 ~v~~~ 568 (794)
.+.+.
T Consensus 198 ~v~~~ 202 (426)
T cd03683 198 FTFRL 202 (426)
T ss_pred HHHHH
Confidence 76654
No 126
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=98.48 E-value=2.3e-07 Score=99.14 Aligned_cols=118 Identities=18% Similarity=0.278 Sum_probs=97.5
Q ss_pred ceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCCCCCcccccchhhhhhc
Q 003801 606 PLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNPTVNDAFSQFSAVDFAK 685 (794)
Q Consensus 606 ~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~d~~~ 685 (794)
++++++|+.+++++++.-..++++++||.++.. -..+|+|+|+.+|+--+ ++ .
T Consensus 117 ~p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~--~~~KLvG~vtsrdi~f~-~~------~------------------ 169 (503)
T KOG2550|consen 117 NPIVISPTTTVGEVKEAKEKHGFSGIPVTEDGK--RGSKLVGIITSRDIQFL-ED------N------------------ 169 (503)
T ss_pred CCcccCCcccchhhhhhcccccccccccccCCc--ccceeEEEEehhhhhhh-hc------c------------------
Confidence 456789999999999999999999999997641 23789999999998332 11 0
Q ss_pred cCCCCCCCccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCcEEEEEecccccH
Q 003801 686 RGSGNGDKIEDIELSEEEMEMYVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHDFMP 765 (794)
Q Consensus 686 ~~~~~~~~i~di~~~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~vvGIITr~Dll~ 765 (794)
..-++++|.+.+++.+.+.++.++-+++++.....+||||+ ++++|-+|+|.||++
T Consensus 170 ---------------------~~~~~~vmt~~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~---~gelva~~~rtDl~k 225 (503)
T KOG2550|consen 170 ---------------------SLLVSDVMTKNPVTGAQGITLKEANEILKKIKKGKLPVVDD---KGELVAMLSRTDLMK 225 (503)
T ss_pred ---------------------cchhhhhcccccccccccccHHHHHHHHHhhhcCCcceecc---CCceeeeeehhhhhh
Confidence 12357788888899999999999999999999999999999 899999999999987
Q ss_pred HHHHhcCccccc
Q 003801 766 EHILALNPLLAR 777 (794)
Q Consensus 766 ~~~~~~~~~l~~ 777 (794)
.+-+|...+
T Consensus 226 ---~~~yPlask 234 (503)
T KOG2550|consen 226 ---NRDYPLASK 234 (503)
T ss_pred ---hcCCCcccc
Confidence 344665554
No 127
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=98.38 E-value=1.4e-06 Score=96.88 Aligned_cols=124 Identities=16% Similarity=0.221 Sum_probs=97.9
Q ss_pred ceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCCCCCcccccchhhhhhc
Q 003801 606 PLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNPTVNDAFSQFSAVDFAK 685 (794)
Q Consensus 606 ~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~d~~~ 685 (794)
++.++..++++.++++.|.+.+.+++||||+. ++.+|.+++.|+..+.....+..... . ....
T Consensus 238 ~i~~i~~~~~v~~al~~m~~~~is~lpvV~~~-----g~~v~~~s~~Dv~~l~~~~~~~~~~~--------~-~l~~--- 300 (381)
T KOG1764|consen 238 NIASISEDTPVIEALKIMSERRISALPVVDEN-----GKKVGNYSRFDVIHLAREGTYNNLDL--------S-CLSE--- 300 (381)
T ss_pred hheeecCCCcHHHHHHHHHhcCcCcceEEcCC-----CceecceehhhhhhhhhcCccCccch--------h-HHHH---
Confidence 68899999999999999999999999999997 67799999999988766543322110 0 0001
Q ss_pred cCCCCCCCccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCcEEEEEecccccH
Q 003801 686 RGSGNGDKIEDIELSEEEMEMYVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHDFMP 765 (794)
Q Consensus 686 ~~~~~~~~i~di~~~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~vvGIITr~Dll~ 765 (794)
..+.++.-....+++.++.+|.+++..+...+.+++.|||+ +|+++|+||..|++.
T Consensus 301 ---------------------~~~~~~~~~~~vvtc~~~ssL~~vi~~lv~~~vHRl~VVd~---~~~l~GvvSLsDil~ 356 (381)
T KOG1764|consen 301 ---------------------ALSHRPIRFEGVVTCRPTSTLAEVIDKLVAHRVHRLWVVDE---DGVLVGVISLSDILS 356 (381)
T ss_pred ---------------------HhhhcccccCccEEEeecchHHHHHHHHHhcCceEEEEEcC---CCcEEEEeeHHHHHH
Confidence 11112222233689999999999999999999999999998 899999999999999
Q ss_pred HHHHh
Q 003801 766 EHILA 770 (794)
Q Consensus 766 ~~~~~ 770 (794)
+....
T Consensus 357 ~l~~~ 361 (381)
T KOG1764|consen 357 YLVLT 361 (381)
T ss_pred HHHhC
Confidence 88764
No 128
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=98.29 E-value=4.5e-06 Score=92.48 Aligned_cols=110 Identities=17% Similarity=0.208 Sum_probs=90.0
Q ss_pred ceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCCCCCcccccchhhhhhc
Q 003801 606 PLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNPTVNDAFSQFSAVDFAK 685 (794)
Q Consensus 606 ~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~d~~~ 685 (794)
......++.+..++++.|...+.+...|+|++ +++.|.|+.+++...++...
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~g~~~~~~~~~~~~~~~----------------------- 302 (363)
T TIGR01186 251 GPITKTADKGPRSALQLMRDERVDSLYVVDRQ-----NKLVGVVDVESIKQARKKAQ----------------------- 302 (363)
T ss_pred cceeecCCCCHHHHHHHHHhcCCceEEEEcCC-----CCEEEEEeHHHHHHHhhcCC-----------------------
Confidence 33445667789999999999999999999987 89999999999865443210
Q ss_pred cCCCCCCCccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCcEEEEEecccccH
Q 003801 686 RGSGNGDKIEDIELSEEEMEMYVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHDFMP 765 (794)
Q Consensus 686 ~~~~~~~~i~di~~~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~vvGIITr~Dll~ 765 (794)
.+.+.+.+...++++++++.+++..|.+.+.. +||+|+ +|+++|+||+.++++
T Consensus 303 -----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~---~~~~~g~i~~~~~~~ 355 (363)
T TIGR01186 303 -----------------------GLQDVLIDDIYTVDAGTLLRETVRKVLKAGIK-VPVVDE---DQRLVGIVTRGSLVD 355 (363)
T ss_pred -----------------------chhhhhccCCceECCCCcHHHHHHHHHhCCCC-EEEECC---CCcEEEEEEHHHHHH
Confidence 13344556677999999999999999999999 999998 899999999999998
Q ss_pred HHHHh
Q 003801 766 EHILA 770 (794)
Q Consensus 766 ~~~~~ 770 (794)
.....
T Consensus 356 ~~~~~ 360 (363)
T TIGR01186 356 ALYDS 360 (363)
T ss_pred HHHhh
Confidence 77543
No 129
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.26 E-value=4.6e-06 Score=93.58 Aligned_cols=118 Identities=14% Similarity=0.102 Sum_probs=93.6
Q ss_pred ceeccccccce---eEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCCCCCc
Q 003801 597 LTVGDVVTAPL---QLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNPTVND 673 (794)
Q Consensus 597 l~v~diM~~~v---v~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~~~~~ 673 (794)
+++.++|.++. +...++....++++.|+..+.+...|+|++ +++.|+|+.+++....+..
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~g~~~~~~~~~~~~~~------------ 336 (400)
T PRK10070 274 FSAKDIARRTPNGLIRKTPGFGPRSALKLLQDEDREYGYVIERG-----NKFVGAVSIDSLKTALTQQ------------ 336 (400)
T ss_pred cchhhhhhcCcccccccCCCCCHHHHHHHHHhcCCceEEEEcCC-----CcEEEEEeHHHHHhhhhcC------------
Confidence 56677775432 223466788999999999999999999998 8999999999996543211
Q ss_pred ccccchhhhhhccCCCCCCCccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCc
Q 003801 674 AFSQFSAVDFAKRGSGNGDKIEDIELSEEEMEMYVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSP 753 (794)
Q Consensus 674 ~~~~~~~~d~~~~~~~~~~~i~di~~~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~ 753 (794)
.++.+.+.+...+|.+++++.+++..+.+.... +||||+ +|+
T Consensus 337 ----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~---~~~ 378 (400)
T PRK10070 337 ----------------------------------QGLDAALIDAPLAVDAQTPLSELLSHVGQAPCA-VPVVDE---DQQ 378 (400)
T ss_pred ----------------------------------CchhhhhccCCceeCCCCCHHHHHHHHHhCCCc-EEEECC---CCc
Confidence 013344556677999999999999999998777 999998 899
Q ss_pred EEEEEecccccHHHHH
Q 003801 754 VMGILTRHDFMPEHIL 769 (794)
Q Consensus 754 vvGIITr~Dll~~~~~ 769 (794)
++|+||+.++++....
T Consensus 379 ~~g~~~~~~~~~~~~~ 394 (400)
T PRK10070 379 YVGIISKGMLLRALDR 394 (400)
T ss_pred EEEEEEHHHHHHHHHh
Confidence 9999999999987754
No 130
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=98.24 E-value=1.3e-06 Score=89.86 Aligned_cols=56 Identities=21% Similarity=0.299 Sum_probs=53.6
Q ss_pred ccccccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCcEEEEEecccccH
Q 003801 707 YVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHDFMP 765 (794)
Q Consensus 707 ~idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~vvGIITr~Dll~ 765 (794)
.++..+||.++.+++++++++.+|.+++.+++++.+||+|+ +.+++||||+.|+.+
T Consensus 244 ~LtcadIMSrdVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~---~~rl~GiVt~~dl~~ 299 (382)
T COG3448 244 ELTCADIMSRDVVTVSTDTSIDHARKLLQEHRIKALPVLDE---HRRLVGIVTQRDLLK 299 (382)
T ss_pred cccHHHhcCccceecCCcCChHHHHHHHHHcCccccccccc---ccceeeeeeHHHHhh
Confidence 47788999999999999999999999999999999999998 889999999999987
No 131
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.93 E-value=1.7e-05 Score=72.90 Aligned_cols=54 Identities=17% Similarity=0.227 Sum_probs=50.9
Q ss_pred ceeccccccceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHH
Q 003801 597 LTVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLI 655 (794)
Q Consensus 597 l~v~diM~~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~ 655 (794)
.+++|+|.+++.++++++++.++++.|++.++..+||+|++ ++++|+|+.+|+.
T Consensus 58 ~~v~dim~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~-----~~l~Givt~~dl~ 111 (113)
T cd04597 58 PRVRDVINRKPVTARPNDPLREALNLMHEHNIRTLPVVDDD-----GTPAGIITLLDLA 111 (113)
T ss_pred hhHHHhcCCCCCEECCcCcHHHHHHHHHHcCCCEEEEECCC-----CeEEEEEEHHHhh
Confidence 78999999999999999999999999999999999999987 8999999999984
No 132
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=97.88 E-value=4.1e-06 Score=98.58 Aligned_cols=160 Identities=23% Similarity=0.293 Sum_probs=106.4
Q ss_pred HHcCCCccccccc------cccccceeccccc-cceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeH
Q 003801 579 KAKGFPYLETHVE------PYMRQLTVGDVVT-APLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILR 651 (794)
Q Consensus 579 ~~~g~p~l~~~~~------~~l~~l~v~diM~-~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r 651 (794)
+.+++|.+..+.. ..-...+++++|+ ++++++++++++.++.+.|.+++++.+||||++ ++++|+|++
T Consensus 222 ~~~~i~ii~t~~dt~~t~~~l~~~~~V~~iM~~~~~~~~~~~~~~~~~~~~m~~~~~~~~PVvd~~-----g~lvGiit~ 296 (546)
T PRK14869 222 KENGVTVISTPYDTFTTARLINQSIPVSYIMTTEDLVTFSKDDYLEDVKEVMLKSRYRSYPVVDED-----GKVVGVISR 296 (546)
T ss_pred HhCCCeEEEecccHHHHHHHhhcCCCHHHhccCCCcEEECCCCcHHHHHHHHHhcCCCceEEEcCC-----CCEEEEEEH
Confidence 4566766643321 1224678999999 899999999999999999999999999999987 899999999
Q ss_pred HHHHHHHHhccCCCCCCCCCCcccccchhhhhhccCCCCCCCccccccchhhhhcccccccccccCCcee---cCCCCHH
Q 003801 652 AHLITLLKKKAFLPTPNPTVNDAFSQFSAVDFAKRGSGNGDKIEDIELSEEEMEMYVDLHPFANASPYTV---VETMSLA 728 (794)
Q Consensus 652 ~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~di~~~~~~~~~~idl~~im~~~p~tV---~~~~sL~ 728 (794)
+|+....+++...-+.. +.. ..... +++.++. +-.| +-.+.++|+..|..+ +...+..
T Consensus 297 ~dl~~~~~~~~iLVD~~-----e~~-q~~~~-----------~~~~~i~-~iiD-HH~~~~~~~~~pi~~~~~~~gst~t 357 (546)
T PRK14869 297 YHLLSPVRKKVILVDHN-----EKS-QAVEG-----------IEEAEIL-EIID-HHRLGDIQTSNPIFFRNEPVGSTST 357 (546)
T ss_pred HHhhccccCceEEEcCc-----ccc-ccccc-----------hhhceEE-EEec-CCccCCCCCCCCcEEEeeeeeeHHH
Confidence 99977544322111100 000 00000 0000000 0001 112345676777655 3466777
Q ss_pred HHHHHHHHcCCCEEEEeecCCCCCcEEEEEecccccHH
Q 003801 729 KALILFREVGLRHLLVIPKISNGSPVMGILTRHDFMPE 766 (794)
Q Consensus 729 ~a~~lf~~~glr~LpVVd~~~~~g~vvGIITr~Dll~~ 766 (794)
.+.++|++.+....|++.. ..+.||+|..+.++.
T Consensus 358 iv~~~~~~~~i~~~~~ia~----~ll~gIlsDT~~f~~ 391 (546)
T PRK14869 358 IVARMYRENGIEPSPEIAG----LLLAAILSDTLLFKS 391 (546)
T ss_pred HHHHHHHHcCCCCCHHHHH----HHHHHHHHHhcCccC
Confidence 8999999999998888863 579999999999874
No 133
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=97.82 E-value=1.6e-05 Score=91.08 Aligned_cols=112 Identities=13% Similarity=0.268 Sum_probs=89.9
Q ss_pred ceeccccccceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCCCCCcccc
Q 003801 597 LTVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNPTVNDAFS 676 (794)
Q Consensus 597 l~v~diM~~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~~~~~~~~ 676 (794)
.+++|+|++++.++++++++.++.+.|+++++..+||||++ ++++|+|+.+|++..+.+..
T Consensus 195 ~~v~~im~~~~~~v~~~~~~~eal~~m~~~~~~~lpVVD~~-----g~lvGiIt~~Dil~~l~~~~-------------- 255 (449)
T TIGR00400 195 EILSSIMRSSVFSIVGVNDQEEVARLIQKYDFLAVPVVDNE-----GRLVGIVTVDDIIDVIQSEA-------------- 255 (449)
T ss_pred CcHHHHhCCCCeeECCCCCHHHHHHHHHHcCCCEEeEEcCC-----CeEEEEEEHHHHHHHHHhhh--------------
Confidence 36899999999999999999999999999999999999987 89999999999988765421
Q ss_pred cchhhhhhccCCCCCCCccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCcEEE
Q 003801 677 QFSAVDFAKRGSGNGDKIEDIELSEEEMEMYVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMG 756 (794)
Q Consensus 677 ~~~~~d~~~~~~~~~~~i~di~~~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~vvG 756 (794)
-+++|+....+..+++.+.++...+.+++..+++|.- +.|
T Consensus 256 ---------------------------------~ed~~~~~gv~~~~~~~l~~~~~~~~~~R~~wL~v~~-------~~~ 295 (449)
T TIGR00400 256 ---------------------------------TEDFYMIAAVKPLDDSYFDTSILVMAKNRIIWLLVLL-------VSS 295 (449)
T ss_pred ---------------------------------HHHHHHhcCCCCCcchhhhchHHHHHHhccchHHHHH-------HHH
Confidence 0234444444555677888989999999999998863 788
Q ss_pred EEecccccHHHH
Q 003801 757 ILTRHDFMPEHI 768 (794)
Q Consensus 757 IITr~Dll~~~~ 768 (794)
++| ..++..+.
T Consensus 296 ~~t-~~ii~~f~ 306 (449)
T TIGR00400 296 TFT-ATIISNYE 306 (449)
T ss_pred HHH-HHHHHHHH
Confidence 888 66666543
No 134
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.78 E-value=2.5e-05 Score=71.73 Aligned_cols=55 Identities=27% Similarity=0.327 Sum_probs=50.3
Q ss_pred cccccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCcEEEEEecccccH
Q 003801 708 VDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHDFMP 765 (794)
Q Consensus 708 idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~vvGIITr~Dll~ 765 (794)
..+.++|.+.+.++++++++.++.++|++.+.+.+||+|+ +|+++|+||++|+.+
T Consensus 58 ~~v~dim~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~---~~~l~Givt~~dl~~ 112 (113)
T cd04597 58 PRVRDVINRKPVTARPNDPLREALNLMHEHNIRTLPVVDD---DGTPAGIITLLDLAE 112 (113)
T ss_pred hhHHHhcCCCCCEECCcCcHHHHHHHHHHcCCCEEEEECC---CCeEEEEEEHHHhhc
Confidence 4477889889999999999999999999999999999997 789999999999864
No 135
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=97.67 E-value=6.1e-05 Score=76.69 Aligned_cols=60 Identities=17% Similarity=0.224 Sum_probs=55.5
Q ss_pred ccceeccccccceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHH
Q 003801 595 RQLTVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLK 659 (794)
Q Consensus 595 ~~l~v~diM~~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~ 659 (794)
-+.+|+|+|+++++++++++.+.|++++|..++...+-|+|++ ++.+|+|+|.|++..+.
T Consensus 232 ~~~kV~~~M~k~vitI~eDe~i~dAir~M~~~nVGRLlV~ds~-----gkpvGiITrTDIL~~ia 291 (294)
T COG2524 232 LDAKVSDYMRKNVITINEDEDIYDAIRLMNKNNVGRLLVTDSN-----GKPVGIITRTDILTRIA 291 (294)
T ss_pred ccccHHHHhccCCceEcCchhHHHHHHHHHhcCcceEEEEccC-----CcEEEEEehHHHHHHhh
Confidence 3578999999999999999999999999999999999999987 89999999999977553
No 136
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.64 E-value=7.3e-05 Score=68.00 Aligned_cols=55 Identities=24% Similarity=0.360 Sum_probs=50.7
Q ss_pred ceeccccccceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHH
Q 003801 597 LTVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLIT 656 (794)
Q Consensus 597 l~v~diM~~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~ 656 (794)
.+++++|..++.++++++++.++++.|.+++.+.+||+|++ ++++|+|+++|+++
T Consensus 56 ~~v~~~~~~~~~~v~~~~~l~~al~~m~~~~~~~lpVvd~~-----~~~~Giit~~di~~ 110 (111)
T cd04603 56 LKVCEVYIVPVPIVYCDSKVTDLLRIFRETEPPVVAVVDKE-----GKLVGTIYERELLR 110 (111)
T ss_pred cChhheeecCCcEECCCCcHHHHHHHHHHcCCCeEEEEcCC-----CeEEEEEEhHHhhc
Confidence 46889999999999999999999999999999999999987 89999999999853
No 137
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=97.58 E-value=5.6e-05 Score=71.47 Aligned_cols=62 Identities=19% Similarity=0.336 Sum_probs=56.5
Q ss_pred cccccccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCcEEEEEecccccHHHHHhc
Q 003801 706 MYVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHDFMPEHILAL 771 (794)
Q Consensus 706 ~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~vvGIITr~Dll~~~~~~~ 771 (794)
..+..+.+|+++.+.|.+++++.++.++|++.|..++||+++ ++++|-||..|+.+...++.
T Consensus 63 ~~ita~~iM~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~----~k~VGsItE~~iv~~~le~~ 124 (187)
T COG3620 63 TRITAKTIMHSPVVSVSPDDSISDVVNLMRDKGISQLPVIEE----DKVVGSITENDIVRALLEGM 124 (187)
T ss_pred ceEeHhhhccCCeeEECchhhHHHHHHHHHHcCCccCceeeC----CeeeeeecHHHHHHHHhccc
Confidence 456678899999999999999999999999999999999984 89999999999999877654
No 138
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.53 E-value=0.00012 Score=66.87 Aligned_cols=55 Identities=20% Similarity=0.267 Sum_probs=50.8
Q ss_pred cceeccccccceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHH
Q 003801 596 QLTVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLI 655 (794)
Q Consensus 596 ~l~v~diM~~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~ 655 (794)
..+++++|.++++++++++++.++++.|.+++.+.+||+|++ ++++|+|+++|++
T Consensus 58 ~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-----~~~~Gvi~~~dl~ 112 (114)
T cd04619 58 TAPVENVMTRAVVSCRPGDLLHDVWQVMKQRGLKNIPVVDEN-----ARPLGVLNARDAL 112 (114)
T ss_pred cCCHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCeEEEECCC-----CcEEEEEEhHhhc
Confidence 356889999999999999999999999999999999999986 7999999999985
No 139
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.33 E-value=0.00028 Score=62.95 Aligned_cols=48 Identities=21% Similarity=0.240 Sum_probs=42.4
Q ss_pred CceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCcEEEEEecccccHHH
Q 003801 718 PYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHDFMPEH 767 (794)
Q Consensus 718 p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~vvGIITr~Dll~~~ 767 (794)
++++++++++.++.++|++.+.+++||+|+ ++++++|+||++|+.+..
T Consensus 3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~--~~~~~~Givt~~Dl~~~~ 50 (98)
T cd04618 3 LVVFDTKLPVKKAFNALVENGIRSAPLWDS--RKQQFVGMLTITDFILIL 50 (98)
T ss_pred EEEECCCCcHHHHHHHHHHcCCceEEEEeC--CCCEEEEEEEHHHHhhhe
Confidence 568999999999999999999999999986 137899999999998643
No 140
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.25 E-value=0.00038 Score=64.19 Aligned_cols=56 Identities=29% Similarity=0.490 Sum_probs=51.2
Q ss_pred cceeccccccceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHH
Q 003801 596 QLTVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLIT 656 (794)
Q Consensus 596 ~l~v~diM~~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~ 656 (794)
..+++++|.+++.++++++++.++++.|.+.+.+.+||+|++ ++++|+|+++|++.
T Consensus 68 ~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~-----g~~~Gvit~~di~~ 123 (124)
T cd04600 68 PETVGDIMSPPVVTVRPDTPIAELVPLLADGGHHHVPVVDED-----RRLVGIVTQTDLIA 123 (124)
T ss_pred cccHHHhccCCCeeeCCCCcHHHHHHHHHhcCCCceeEEcCC-----CCEEEEEEhHHhhc
Confidence 457889999999999999999999999999999999999976 89999999999853
No 141
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.23 E-value=0.00044 Score=63.67 Aligned_cols=48 Identities=17% Similarity=0.209 Sum_probs=43.8
Q ss_pred CCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCcEEEEEecccccHHH
Q 003801 717 SPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHDFMPEH 767 (794)
Q Consensus 717 ~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~vvGIITr~Dll~~~ 767 (794)
++.++++++++.++.++|.+.+.+++||+|+ +|+++|++|++|++...
T Consensus 2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~---~~~~~Giv~~~dl~~~~ 49 (120)
T cd04641 2 NIATARPDTPLIDVLDMLVERRVSALPIVDE---NGKVVDVYSRFDVINLA 49 (120)
T ss_pred CcEEEcCCCCHHHHHHHHHHcCCCeeeEECC---CCeEEEEEeHHHHHHHH
Confidence 4568999999999999999999999999997 78999999999999754
No 142
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.23 E-value=0.00049 Score=62.44 Aligned_cols=54 Identities=17% Similarity=0.222 Sum_probs=49.6
Q ss_pred ceeccccccceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHH
Q 003801 597 LTVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLI 655 (794)
Q Consensus 597 l~v~diM~~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~ 655 (794)
.+++++|.+++.++++++++.++++.|.+++.+.+||+|++ ++++|+|+++|++
T Consensus 58 ~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~-----~~~~Gvit~~di~ 111 (113)
T cd04607 58 DPVSEVMNRNPITAKVGSSREEILALMRERSIRHLPILDEE-----GRVVGLATLDDLL 111 (113)
T ss_pred CCHHHhhcCCCEEEcCCCCHHHHHHHHHHCCCCEEEEECCC-----CCEEEEEEhHHhc
Confidence 45789999989999999999999999999999999999976 7899999999984
No 143
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=97.22 E-value=0.00059 Score=78.97 Aligned_cols=57 Identities=25% Similarity=0.286 Sum_probs=52.2
Q ss_pred ceeccccc-cceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHH
Q 003801 597 LTVGDVVT-APLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLL 658 (794)
Q Consensus 597 l~v~diM~-~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL 658 (794)
.+++|+|+ ++++++++++++.++++.|.+++.+.+||+|++ ++++|+|+++|+++.+
T Consensus 147 ~~V~dim~~~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe~-----g~lvGiIT~~DLl~~~ 204 (486)
T PRK05567 147 QPVSEVMTKERLVTVPEGTTLEEALELLHEHRIEKLPVVDDN-----GRLKGLITVKDIEKAE 204 (486)
T ss_pred CcHHHHcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCC-----CcEEEEEEhHHhhhhh
Confidence 46889998 789999999999999999999999999999987 8999999999997654
No 144
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.20 E-value=0.00056 Score=62.22 Aligned_cols=56 Identities=21% Similarity=0.432 Sum_probs=49.7
Q ss_pred cceeccccccceeEEecc--ccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHH
Q 003801 596 QLTVGDVVTAPLQLFHGI--EKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLIT 656 (794)
Q Consensus 596 ~l~v~diM~~~vv~l~~~--~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~ 656 (794)
+.++.++|.+++.+++++ +++.++++.|.+++...+||+|++ ++++|+|+++|+++
T Consensus 57 ~~~i~~~~~~~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~~-----~~~~Gvit~~dl~~ 114 (115)
T cd04620 57 DLPIGEVMTQPVVTLQESEIQDIFTALSLFRQHQIRHLPVLDDQ-----GQLIGLVTAESIRQ 114 (115)
T ss_pred ccCHHHhcCCCcEEEecccccCHHHHHHHHHHhCCceEEEEcCC-----CCEEEEEEhHHhhc
Confidence 356788999888899887 789999999999999999999987 89999999999854
No 145
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.19 E-value=0.00057 Score=61.64 Aligned_cols=57 Identities=19% Similarity=0.318 Sum_probs=51.2
Q ss_pred cceeccccccceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHH
Q 003801 596 QLTVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITL 657 (794)
Q Consensus 596 ~l~v~diM~~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~l 657 (794)
+.+++++|.+++.++++++++.++++.|.+++...+||+|++ ++++|+|+++|+++.
T Consensus 52 ~~~v~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~-----~~~~Gvit~~dll~~ 108 (109)
T cd04606 52 DTPVSDIMDTDVISVSADDDQEEVARLFEKYDLLALPVVDEE-----GRLVGIITVDDVIDV 108 (109)
T ss_pred cchHHHHhCCCCeEEcCCCCHHHHHHHHHHcCCceeeeECCC-----CcEEEEEEhHHhhhh
Confidence 356888998889999999999999999999999999999976 899999999999653
No 146
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.17 E-value=0.00056 Score=63.24 Aligned_cols=52 Identities=15% Similarity=0.152 Sum_probs=47.4
Q ss_pred eccccccceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHH
Q 003801 599 VGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLI 655 (794)
Q Consensus 599 v~diM~~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~ 655 (794)
+.++|..++.++++++++.++++.|.+++.+.+||+|++ ++++|+|+.+|+.
T Consensus 70 ~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-----~~~vGiit~~di~ 121 (123)
T cd04627 70 DLTIGTSDVISINGDQPLIDALHLMHNEGISSVAVVDNQ-----GNLIGNISVTDVR 121 (123)
T ss_pred hcccCcCCceEeCCCCCHHHHHHHHHHcCCceEEEECCC-----CcEEEEEeHHHhh
Confidence 345788899999999999999999999999999999987 7899999999984
No 147
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=97.17 E-value=0.00065 Score=62.13 Aligned_cols=57 Identities=19% Similarity=0.355 Sum_probs=51.9
Q ss_pred ccceeccccccceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHH
Q 003801 595 RQLTVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLIT 656 (794)
Q Consensus 595 ~~l~v~diM~~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~ 656 (794)
++.++.++|.+++.++++++++.++++.|.+.+...+||+|++ ++++|+|++.|+++
T Consensus 65 ~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~-----~~~~Gvvt~~di~~ 121 (122)
T cd04585 65 SKIKVSDIMTRDPITVSPDASVEEAAELMLERKISGLPVVDDQ-----GRLVGIITESDLFR 121 (122)
T ss_pred cccCHHHhccCCCeEeCCCCcHHHHHHHHHHcCCCceeEECCC-----CcEEEEEEHHHhhh
Confidence 4567889999999999999999999999999999999999986 79999999999854
No 148
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=97.14 E-value=0.00061 Score=50.79 Aligned_cols=46 Identities=37% Similarity=0.558 Sum_probs=41.3
Q ss_pred CceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCcEEEEEecccccHH
Q 003801 718 PYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHDFMPE 766 (794)
Q Consensus 718 p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~vvGIITr~Dll~~ 766 (794)
+.++.+++++.++.+.|++.+.+++||+++ +++++|+++++|+.+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~~~~~g~i~~~~l~~~ 47 (49)
T smart00116 2 VVTVSPDTTLEEALELLREHGIRRLPVVDE---EGRLVGIVTRRDIIKA 47 (49)
T ss_pred ceEecCCCcHHHHHHHHHHhCCCcccEECC---CCeEEEEEEHHHHHHh
Confidence 457889999999999999999999999997 6899999999998653
No 149
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.12 E-value=0.00074 Score=60.80 Aligned_cols=56 Identities=23% Similarity=0.337 Sum_probs=50.8
Q ss_pred cceeccccccceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHH
Q 003801 596 QLTVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLIT 656 (794)
Q Consensus 596 ~l~v~diM~~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~ 656 (794)
+.+++++|..++.++++++++.++.+.|.+++.+.+||+|++ ++++|+++++|+.+
T Consensus 52 ~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~-----~~~~G~it~~di~~ 107 (108)
T cd04596 52 DTTIEKVMTKNPITVNPKTSVASVAHMMIWEGIEMLPVVDDN-----KKLLGIISRQDVLK 107 (108)
T ss_pred cccHHHHhcCCCeEECCCCCHHHHHHHHHHcCCCeeeEEcCC-----CCEEEEEEHHHhhc
Confidence 456889999899999999999999999999999999999976 89999999999853
No 150
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.12 E-value=0.0005 Score=63.12 Aligned_cols=59 Identities=17% Similarity=0.246 Sum_probs=50.1
Q ss_pred cceecccccc--ceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHH
Q 003801 596 QLTVGDVVTA--PLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLIT 656 (794)
Q Consensus 596 ~l~v~diM~~--~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~ 656 (794)
..+++++|.+ ++.++++++++.++++.|.++++..+||+|++. ++++++|+|+++|+.+
T Consensus 57 ~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~--~~~~l~Gvit~~~l~~ 117 (118)
T cd04617 57 KVPVGVIMTRMPNITTTTPEESVLEAAKKLIEHQVDSLPVVEKVD--EGLEVIGRITKTNITK 117 (118)
T ss_pred CCCHHHHhCCCCCcEEECCCCcHHHHHHHHHHcCCCEeeEEeCCC--ccceEEEEEEhhheec
Confidence 4567789985 788999999999999999999999999999851 1258999999999853
No 151
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.11 E-value=0.00076 Score=59.80 Aligned_cols=47 Identities=23% Similarity=0.347 Sum_probs=43.1
Q ss_pred CCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCcEEEEEecccccHH
Q 003801 717 SPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHDFMPE 766 (794)
Q Consensus 717 ~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~vvGIITr~Dll~~ 766 (794)
++.++++++++.++.+.|.+.+.+.+||+|+ +++++|++|.+|+.+.
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~---~~~~~Giv~~~dl~~~ 48 (96)
T cd04614 2 NVPTVWEETPLPVAVRIMELANVKALPVLDD---DGKLSGIITERDLIAK 48 (96)
T ss_pred CccEeCCCCcHHHHHHHHHHcCCCeEEEECC---CCCEEEEEEHHHHhcC
Confidence 5678999999999999999999999999997 7899999999998863
No 152
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.11 E-value=0.00084 Score=60.66 Aligned_cols=54 Identities=17% Similarity=0.185 Sum_probs=49.2
Q ss_pred ceeccccccceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHH
Q 003801 597 LTVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLIT 656 (794)
Q Consensus 597 l~v~diM~~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~ 656 (794)
.++.++|..++.++++++++.++++.|.+++...+||+|+ ++++|+|+++|++.
T Consensus 58 ~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~~------~~~~Gvvt~~dl~~ 111 (112)
T cd04625 58 TTVRAIMNPEPIVASPDDSIDEVRRLMVERHLRYLPVLDG------GTLLGVISFHDVAK 111 (112)
T ss_pred CCHHHHhCCCCeEECCCCCHHHHHHHHHHcCCCeeeEEEC------CEEEEEEEHHHhhc
Confidence 4688999998889999999999999999999999999985 79999999999853
No 153
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.11 E-value=0.00082 Score=60.83 Aligned_cols=56 Identities=13% Similarity=0.352 Sum_probs=50.5
Q ss_pred ccceeccccccceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHH
Q 003801 595 RQLTVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLI 655 (794)
Q Consensus 595 ~~l~v~diM~~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~ 655 (794)
...++.++|.+++.++++++++.++++.|.+++.+.+||+|++ ++++|+|++.|++
T Consensus 56 ~~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~-----g~~~Gvvt~~dl~ 111 (113)
T cd04615 56 KDAKVREVMNSPVITIDANDSIAKARWLMSNNNISRLPVLDDK-----GKVGGIVTEDDIL 111 (113)
T ss_pred cCCcHHHhccCCceEECCCCcHHHHHHHHHHcCCCeeeEECCC-----CeEEEEEEHHHhh
Confidence 3456889999899999999999999999999999999999986 7999999999984
No 154
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=97.10 E-value=0.0008 Score=63.80 Aligned_cols=50 Identities=26% Similarity=0.199 Sum_probs=45.3
Q ss_pred CCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCcEEEEEecccccHHHHH
Q 003801 717 SPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHDFMPEHIL 769 (794)
Q Consensus 717 ~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~vvGIITr~Dll~~~~~ 769 (794)
++.++.+++++.++.+.|.+.+...+||+|+ +|+++|+||.+|+++....
T Consensus 2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~---~g~l~Givt~~Dl~~~~~~ 51 (133)
T cd04592 2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDS---DDFLEGILTLGDIQRFLFT 51 (133)
T ss_pred CceEECCCCCHHHHHHHHHHcCCCEEEEECC---CCeEEEEEEHHHHHHHHhh
Confidence 4578999999999999999999999999997 7899999999999986654
No 155
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=97.09 E-value=0.001 Score=61.91 Aligned_cols=52 Identities=23% Similarity=0.452 Sum_probs=46.3
Q ss_pred cCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCcEEEEEecccccHHHHHh
Q 003801 716 ASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHDFMPEHILA 770 (794)
Q Consensus 716 ~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~vvGIITr~Dll~~~~~~ 770 (794)
+++.++++++++.++.+.|++.+.+++||+|+ +++++|+||.+|+++....+
T Consensus 2 ~~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~---~~~~~Gii~~~dl~~~~~~~ 53 (124)
T cd04608 2 KAPVTVLPTVTCAEAIEILKEKGFDQLPVVDE---SGKILGMVTLGNLLSSLSSG 53 (124)
T ss_pred CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcC---CCCEEEEEEHHHHHHHHHHh
Confidence 45678999999999999999999999999997 78999999999999766543
No 156
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.07 E-value=0.001 Score=63.00 Aligned_cols=56 Identities=16% Similarity=0.331 Sum_probs=50.8
Q ss_pred ccceeccccccceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHH
Q 003801 595 RQLTVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLIT 656 (794)
Q Consensus 595 ~~l~v~diM~~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~ 656 (794)
...+++++|.+++..+.+++++.++++.|.+.+++.+||+|+ ++++|+|+++|+++
T Consensus 79 ~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~------~~~~Gvit~~di~~ 134 (135)
T cd04621 79 VPLVAEDIMTEEIITVSPNDDVVDAAKLMLEANISGLPVVDN------DNIVGVITKTDICR 134 (135)
T ss_pred ccccHHHhcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEeC------CEEEEEEEHHHHhh
Confidence 456799999999999999999999999999999999999987 68999999999854
No 157
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.06 E-value=0.00092 Score=60.82 Aligned_cols=55 Identities=18% Similarity=0.263 Sum_probs=49.8
Q ss_pred cceeccccccceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHH
Q 003801 596 QLTVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLIT 656 (794)
Q Consensus 596 ~l~v~diM~~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~ 656 (794)
..+++++|..++.++++++++.++++.|.+.+...+||+|+ ++++|+|+++|++.
T Consensus 59 ~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~------~~~~Gvi~~~dl~~ 113 (114)
T cd04630 59 RVNVYEIMTKPLISVSPDMDIKYCARLMERTNIRRAPVVEN------NELIGIISLTDIFL 113 (114)
T ss_pred ccCHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCEeeEeeC------CEEEEEEEHHHhhc
Confidence 35788999989999999999999999999999999999986 68999999999853
No 158
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.04 E-value=0.001 Score=59.44 Aligned_cols=54 Identities=26% Similarity=0.319 Sum_probs=49.6
Q ss_pred ceeccccccceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHH
Q 003801 597 LTVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLI 655 (794)
Q Consensus 597 l~v~diM~~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~ 655 (794)
..++++|.+++.++.+++++.++++.|.+++.+.+||+|++ ++++|+|+.++++
T Consensus 52 ~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~-----g~~~Gvi~~~di~ 105 (107)
T cd04610 52 ETVEEIMSKDLVVAVPEMDIMDAARVMFRTGISKLPVVDEN-----NNLVGIITNTDVI 105 (107)
T ss_pred ccHHHhCCCCCeEECCCCCHHHHHHHHHHhCCCeEeEECCC-----CeEEEEEEHHHhh
Confidence 46889999889999999999999999999999999999987 7999999999985
No 159
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=97.02 E-value=0.0011 Score=60.03 Aligned_cols=55 Identities=22% Similarity=0.344 Sum_probs=50.1
Q ss_pred ceeccccccceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHH
Q 003801 597 LTVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLIT 656 (794)
Q Consensus 597 l~v~diM~~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~ 656 (794)
.++.++|.+++.++++++++.++++.|.+++...+||+|++ ++++|+|++.|+++
T Consensus 59 ~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~-----~~~iG~it~~di~~ 113 (114)
T cd04604 59 LPVADVMTRNPKTIDPDALAAEALELMEENKITALPVVDDN-----GRPVGVLHIHDLLR 113 (114)
T ss_pred CCHHHhhccCCeEECCCCcHHHHHHHHHHcCCCEEEEECCC-----CCEEEEEEHHHhhc
Confidence 36889999999999999999999999999999999999976 89999999999853
No 160
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=97.01 E-value=0.00092 Score=60.43 Aligned_cols=54 Identities=19% Similarity=0.213 Sum_probs=49.8
Q ss_pred ceeccccccceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHH
Q 003801 597 LTVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLI 655 (794)
Q Consensus 597 l~v~diM~~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~ 655 (794)
.++.++|.+++.++++++++.++++.|.+++.+.+||+|++ ++++|+|+.+|++
T Consensus 58 ~~v~~i~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~-----~~~~Gvvs~~dl~ 111 (113)
T cd04587 58 TLVERVMTPNPVCATSDTPVLEALHLMVQGKFRHLPVVDKS-----GQVVGLLDVTKLT 111 (113)
T ss_pred CCHHHhcCCCCeEEcCCCCHHHHHHHHHHcCCCcccEECCC-----CCEEEEEEHHHhc
Confidence 56889999999999999999999999999999999999986 7899999999985
No 161
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=97.01 E-value=0.0012 Score=60.11 Aligned_cols=54 Identities=19% Similarity=0.314 Sum_probs=48.2
Q ss_pred ceeccccccceeEEec--cccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHH
Q 003801 597 LTVGDVVTAPLQLFHG--IEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLI 655 (794)
Q Consensus 597 l~v~diM~~~vv~l~~--~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~ 655 (794)
..++++|..+..++.. ++++.++++.|++++...+||+|++ ++++|+|+++|+.
T Consensus 57 ~~v~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~~~-----~~~~Gvit~~di~ 112 (114)
T cd04602 57 TPLSEVMTPREVLVVAPTGITLEEANEILRESKKGKLPIVNDD-----GELVALVTRSDLK 112 (114)
T ss_pred CCHHHhcCCCceEEECCCCCCHHHHHHHHHhcCCCceeEECCC-----CeEEEEEEHHHhh
Confidence 3477899888778866 9999999999999999999999986 7999999999985
No 162
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.00 E-value=0.001 Score=61.09 Aligned_cols=57 Identities=18% Similarity=0.364 Sum_probs=51.6
Q ss_pred ccceeccccccceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHH
Q 003801 595 RQLTVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLIT 656 (794)
Q Consensus 595 ~~l~v~diM~~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~ 656 (794)
...++.++|..++.++++++++.++++.|.+.+.+.+||+|++ ++++|+|++.|++.
T Consensus 65 ~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~-----~~~~Gvit~~dl~~ 121 (122)
T cd04803 65 RDVPVAEVMKTDVLTVTPDTPLREAAEIMVENKIGCLPVVDDK-----GTLVGIITRSDFLR 121 (122)
T ss_pred cCcCHHHhhCCCCeEeCCCCcHHHHHHHHHHcCCCeEEEEcCC-----CCEEEEEEHHHhhc
Confidence 4567889999999999999999999999999999999999986 78999999999853
No 163
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.98 E-value=0.0011 Score=59.78 Aligned_cols=53 Identities=17% Similarity=0.234 Sum_probs=49.1
Q ss_pred eeccccccceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHH
Q 003801 598 TVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLI 655 (794)
Q Consensus 598 ~v~diM~~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~ 655 (794)
.+.++|..++.++++++++.++++.|.+++.+.+||+|++ ++++|+++++|+.
T Consensus 57 ~v~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~-----~~~~G~it~~dl~ 109 (111)
T cd04639 57 PVRGVMRRDFPTVSPSATLDAVLRLMQQGGAPAVPVVDGS-----GRLVGLVTLENVG 109 (111)
T ss_pred cHHHHhcCCCcEECCCCcHHHHHHHHHhcCCceeeEEcCC-----CCEEEEEEHHHhh
Confidence 5788998899999999999999999999999999999986 7899999999985
No 164
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=96.98 E-value=0.001 Score=73.03 Aligned_cols=55 Identities=18% Similarity=0.178 Sum_probs=50.9
Q ss_pred cceeccccccceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHH
Q 003801 596 QLTVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLIT 656 (794)
Q Consensus 596 ~l~v~diM~~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~ 656 (794)
..+++|+|++++.++++++++.++++.|.+++.+.+||+|+ ++++|+|+++|+++
T Consensus 268 ~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~------~~lvGiit~~dil~ 322 (326)
T PRK10892 268 QASIADVMTPGGIRVRPGILAVDALNLMQSRHITSVLVADG------DHLLGVLHMHDLLR 322 (326)
T ss_pred cCCHHHhcCCCCEEECCCCCHHHHHHHHHHCCCcEEEEeeC------CEEEEEEEhHHhHh
Confidence 45799999999999999999999999999999999999985 68999999999964
No 165
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=96.97 E-value=0.0013 Score=59.34 Aligned_cols=55 Identities=18% Similarity=0.380 Sum_probs=50.9
Q ss_pred cceeccccccceeEEeccccHHHHHHHHhcCCCCeeEEeeC-CCCCCCCeEEEEEeHHHHH
Q 003801 596 QLTVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDE-NPLSETPILYGLILRAHLI 655 (794)
Q Consensus 596 ~l~v~diM~~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~-~~~~~~~~l~GiI~r~dL~ 655 (794)
..++.++|.+++.++++++++.++++.|.+.++..+||+|+ + ++++|+++.+|++
T Consensus 57 ~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~-----~~~~Gvvt~~di~ 112 (114)
T cd04613 57 LVVASDIMTKPPVVVYPEDSLEDALKKFEDSDYEQLPVVDDDP-----GKLLGILSRSDLL 112 (114)
T ss_pred cEEHHHhccCCCcEEcCCCCHHHHHHHHhhCCccEeeEEeCCC-----CEEEEEEEhHHhh
Confidence 36788999999999999999999999999999999999987 5 7999999999985
No 166
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=96.97 E-value=0.0013 Score=59.20 Aligned_cols=55 Identities=24% Similarity=0.387 Sum_probs=50.2
Q ss_pred cceeccccccceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHH
Q 003801 596 QLTVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLI 655 (794)
Q Consensus 596 ~l~v~diM~~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~ 655 (794)
..+++++|.+++.++++++++.++++.|.+.+...+||+|++ +++.|+|+++|++
T Consensus 55 ~~~v~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~~~-----~~~~Gvi~~~di~ 109 (111)
T cd04611 55 QTPVGEVMSSPLLTVPADTSLYDARQLMREHGIRHLVVVDDD-----GELLGLLSQTDLL 109 (111)
T ss_pred CcCHHHhcCCCceEECCCCCHHHHHHHHHHcCCeEEEEECCC-----CcEEEEEEhHHhh
Confidence 467889999999999999999999999999888899999986 7899999999985
No 167
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.97 E-value=0.0012 Score=60.69 Aligned_cols=57 Identities=18% Similarity=0.329 Sum_probs=51.3
Q ss_pred ccceeccccccceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHH
Q 003801 595 RQLTVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLIT 656 (794)
Q Consensus 595 ~~l~v~diM~~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~ 656 (794)
...++.++|.+++.++++++++.++.+.|.+.+.+.+||+|++ ++++|+++++|+++
T Consensus 65 ~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~-----g~~~Gvit~~dl~~ 121 (122)
T cd04635 65 ASPTVEKIMSTPVYSVTPDDSIATAVELMLEHDIGRLPVVNEK-----DQLVGIVDRHDVLK 121 (122)
T ss_pred ccCcHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCeeeEEcCC-----CcEEEEEEhHHhhc
Confidence 3556889999899999999999999999999999999999986 89999999999853
No 168
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=96.96 E-value=0.002 Score=47.89 Aligned_cols=47 Identities=23% Similarity=0.359 Sum_probs=41.8
Q ss_pred eeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHH
Q 003801 607 LQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLL 658 (794)
Q Consensus 607 vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL 658 (794)
+.++++++++.++.+.|++.+++.+||++++ ++++|+++.+++...+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-----~~~~g~i~~~~l~~~~ 48 (49)
T smart00116 2 VVTVSPDTTLEEALELLREHGIRRLPVVDEE-----GRLVGIVTRRDIIKAL 48 (49)
T ss_pred ceEecCCCcHHHHHHHHHHhCCCcccEECCC-----CeEEEEEEHHHHHHhh
Confidence 4678899999999999999999999999986 7899999999997654
No 169
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=96.95 E-value=0.0015 Score=58.31 Aligned_cols=53 Identities=13% Similarity=0.103 Sum_probs=48.6
Q ss_pred eeccccccceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHH
Q 003801 598 TVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLI 655 (794)
Q Consensus 598 ~v~diM~~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~ 655 (794)
+++++|.++...+++++++.++++.|.+.+.+.+||+|++ ++++|+|+++++.
T Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~~~-----~~~~Gvi~~~~l~ 104 (106)
T cd04582 52 CCGDHAEPFKVTVSVDDDLRIVLSRMFAHDMSWLPCVDED-----GRYVGEVTQRSIA 104 (106)
T ss_pred chhhhcccCCEEECCCCCHHHHHHHHHHCCCCeeeEECCC-----CcEEEEEEHHHhh
Confidence 4778898888889999999999999999999999999986 7899999999985
No 170
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=96.93 E-value=0.0014 Score=58.64 Aligned_cols=54 Identities=22% Similarity=0.319 Sum_probs=49.4
Q ss_pred ceeccccccceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHH
Q 003801 597 LTVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLI 655 (794)
Q Consensus 597 l~v~diM~~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~ 655 (794)
.++.++|.+++.++++++++.++.+.|.+.+.+.+||+|++ ++++|+++++|++
T Consensus 54 ~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~vv~~~-----g~~~Gvit~~~l~ 107 (109)
T cd04583 54 KSLEDIMLEDVFTVQPDASLRDVLGLVLKRGPKYVPVVDED-----GKLVGLITRSSLV 107 (109)
T ss_pred CcHhHhhcCCceEECCCCcHHHHHHHHHHcCCceeeEECCC-----CeEEEEEehHHhh
Confidence 35788899899999999999999999999999999999987 7999999999985
No 171
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.93 E-value=0.001 Score=60.18 Aligned_cols=50 Identities=18% Similarity=0.286 Sum_probs=44.3
Q ss_pred CCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCcEEEEEecccccHHHHH
Q 003801 717 SPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHDFMPEHIL 769 (794)
Q Consensus 717 ~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~vvGIITr~Dll~~~~~ 769 (794)
++.++++++++.++.+.|.+.+.+.+||+|+ +++++|+||.+|+++....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~---~~~~~G~v~~~~l~~~~~~ 51 (114)
T cd04629 2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVDD---NGNLVGFLSEQDCLKQLLE 51 (114)
T ss_pred CCeEeCCCCCHHHHHHHHHhcCCCCccEECC---CCeEEEEeehHHHHHHhhh
Confidence 4568899999999999999999999999997 7899999999999875543
No 172
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=96.93 E-value=0.0015 Score=59.03 Aligned_cols=54 Identities=19% Similarity=0.440 Sum_probs=49.1
Q ss_pred cceeccccccceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHH
Q 003801 596 QLTVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLI 655 (794)
Q Consensus 596 ~l~v~diM~~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~ 655 (794)
+.++.++|.+++.++++++++.++++.|.+.+...+||+|+ ++++|+|+++|++
T Consensus 57 ~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~------~~~~Gvi~~~di~ 110 (112)
T cd04802 57 EVPVGEVMSTPLITIDPNASLNEAAKLMAKHGIKRLPVVDD------DELVGIVTTTDIV 110 (112)
T ss_pred cCCHHHhcCCCcEEECCCCCHHHHHHHHHHcCCCeeEEeeC------CEEEEEEEhhhhh
Confidence 45788999989999999999999999999999999999986 4899999999985
No 173
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.92 E-value=0.0013 Score=59.83 Aligned_cols=49 Identities=20% Similarity=0.270 Sum_probs=44.0
Q ss_pred CCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCcEEEEEecccccHHHH
Q 003801 717 SPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHDFMPEHI 768 (794)
Q Consensus 717 ~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~vvGIITr~Dll~~~~ 768 (794)
.++++++++++.++.+.|++.+.+.+||+|+ +++++|+++.+|+++...
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~---~~~~~Giv~~~dl~~~~~ 50 (116)
T cd04643 2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDK---EGKYVGTISLTDILWKLK 50 (116)
T ss_pred CcEEECCCCcHHHHHHHHHHCCCceeeeECC---CCcEEEEEeHHHHHHHhh
Confidence 3568999999999999999999999999997 789999999999987554
No 174
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.92 E-value=0.0016 Score=58.69 Aligned_cols=54 Identities=17% Similarity=0.274 Sum_probs=49.5
Q ss_pred cceeccccccceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHH
Q 003801 596 QLTVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLI 655 (794)
Q Consensus 596 ~l~v~diM~~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~ 655 (794)
..++.++|.+++.++++++++.++++.|.+.+.+.+||+| + ++++|+|+++|++
T Consensus 55 ~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~-----~~~~Gvvt~~di~ 108 (110)
T cd04595 55 HAPVKDYMSTDVVTVPPDTPLSEVQELMVEHDIGRVPVVE-D-----GRLVGIVTRTDLL 108 (110)
T ss_pred cCcHHHHhcCCCEEECCCCcHHHHHHHHHHcCCCeeEEEe-C-----CEEEEEEEhHHhh
Confidence 4678899999999999999999999999999999999999 4 7999999999984
No 175
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=96.92 E-value=0.0014 Score=58.74 Aligned_cols=55 Identities=22% Similarity=0.264 Sum_probs=48.2
Q ss_pred cceeccccccceeEEec-cccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHH
Q 003801 596 QLTVGDVVTAPLQLFHG-IEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLI 655 (794)
Q Consensus 596 ~l~v~diM~~~vv~l~~-~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~ 655 (794)
+.++.++|.+++..+.+ ++++.++++.|.+.+++.+||+|++ ++++|+|+++|++
T Consensus 53 ~~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~-----~~~~Gvi~~~dil 108 (110)
T cd04601 53 DKPVSEVMTPENLLTTVEGTSLEEALELLHEHKIEKLPVVDDE-----GKLKGLITVKDIE 108 (110)
T ss_pred CCCHHHhcccCceEEecCCCCHHHHHHHHHHhCCCeeeEEcCC-----CCEEEEEEhhhhh
Confidence 35678899877666777 9999999999999999999999986 7999999999985
No 176
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.91 E-value=0.001 Score=62.66 Aligned_cols=55 Identities=25% Similarity=0.372 Sum_probs=50.3
Q ss_pred cceeccccccceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHH
Q 003801 596 QLTVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLIT 656 (794)
Q Consensus 596 ~l~v~diM~~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~ 656 (794)
..++.++|.+++.++++++++.++++.|.+.+.+.+||+| + ++++|+|+++|+.+
T Consensus 80 ~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd-~-----g~~~Gvit~~di~~ 134 (135)
T cd04586 80 GRKVADVMTRPVVTVGEDTPLAEVAELMEEHRIKRVPVVR-G-----GRLVGIVSRADLLR 134 (135)
T ss_pred CCCHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCccCEec-C-----CEEEEEEEhHhhhc
Confidence 4578899999999999999999999999999999999999 5 89999999999853
No 177
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=96.91 E-value=0.0012 Score=59.56 Aligned_cols=55 Identities=24% Similarity=0.395 Sum_probs=49.9
Q ss_pred ceeccccccceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHH
Q 003801 597 LTVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLIT 656 (794)
Q Consensus 597 l~v~diM~~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~ 656 (794)
.++.++|.+++.++++++++.++++.|.+.+...+||+|++ ++++|+|++.|+++
T Consensus 58 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~-----~~~~G~it~~di~~ 112 (113)
T cd04622 58 TTVGDVMTRGVVTVTEDDDVDEAARLMREHQVRRLPVVDDD-----GRLVGIVSLGDLAR 112 (113)
T ss_pred CCHHHhccCCccEECCCCCHHHHHHHHHHcCCCeeeEECCC-----CcEEEEEEHHHhhc
Confidence 35889999999999999999999999999999999999886 78999999999853
No 178
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.89 E-value=0.0018 Score=58.34 Aligned_cols=55 Identities=15% Similarity=0.307 Sum_probs=49.7
Q ss_pred cceeccccccceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHH
Q 003801 596 QLTVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLIT 656 (794)
Q Consensus 596 ~l~v~diM~~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~ 656 (794)
..+++++|.+++.++++++++.++++.|.+.+...+||+|+ ++++|+|+.+|+++
T Consensus 58 ~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~Vv~~------~~~~Gvit~~di~~ 112 (113)
T cd04623 58 DTPVSEIMTRNVITVTPDDTVDEAMALMTERRFRHLPVVDG------GKLVGIVSIGDVVK 112 (113)
T ss_pred ccCHHHhcCCCcEEECCCCcHHHHHHHHHHcCCCEeEEEeC------CEEEEEEEHHHhhc
Confidence 45788999889999999999999999999999999999987 68999999999853
No 179
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=96.88 E-value=0.0016 Score=58.57 Aligned_cols=54 Identities=19% Similarity=0.264 Sum_probs=49.2
Q ss_pred ceeccccccceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHH
Q 003801 597 LTVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLI 655 (794)
Q Consensus 597 l~v~diM~~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~ 655 (794)
.++.++|.+++.++++++++.++++.|.+.+.+.+||+|++ +++.|+|+++|++
T Consensus 55 ~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~-----~~~~G~i~~~dl~ 108 (110)
T cd04588 55 AKVKDVMTKDVITIDEDEQLYDAIRLMNKHNVGRLIVTDDE-----GRPVGIITRTDIL 108 (110)
T ss_pred cCHHHHhcCCceEECCCCCHHHHHHHHHhcCCCEEEEECCC-----CCEEEEEEhHHhh
Confidence 45778898899999999999999999999999999999986 7999999999985
No 180
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.88 E-value=0.0016 Score=60.12 Aligned_cols=56 Identities=18% Similarity=0.355 Sum_probs=50.6
Q ss_pred cceeccccccceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHH
Q 003801 596 QLTVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLIT 656 (794)
Q Consensus 596 ~l~v~diM~~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~ 656 (794)
..++.++|.+++.++++++++.++++.|.+.+.+.+||+|++ ++++|+|+++|+++
T Consensus 69 ~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~-----~~~~Gvit~~di~~ 124 (125)
T cd04631 69 NEPVRSIMTRNVITITPDDSIKDAAELMLEKRVGGLPVVDDD-----GKLVGIVTERDLLK 124 (125)
T ss_pred hcCHHHHhcCCceEeCCCCcHHHHHHHHHHcCCceEEEEcCC-----CcEEEEEEHHHhhc
Confidence 356888998899999999999999999999999999999986 78999999999853
No 181
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=96.88 E-value=0.0014 Score=58.99 Aligned_cols=55 Identities=22% Similarity=0.286 Sum_probs=50.0
Q ss_pred cceeccccccceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHH
Q 003801 596 QLTVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLIT 656 (794)
Q Consensus 596 ~l~v~diM~~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~ 656 (794)
..++.++|..++.++++++++.++++.|.+++.+.+||+++ ++++|+++.+|+++
T Consensus 56 ~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~------~~~~Giit~~di~~ 110 (111)
T cd04800 56 DTPVSEVMTAPPITIPPDATVFEALLLMLERGIHHLPVVDD------GRLVGVISATDLLR 110 (111)
T ss_pred cCCHHHHhCCCCeEECCCCcHHHHHHHHHHcCCCeeeEeEC------CEEEEEEEHHHhhc
Confidence 35688999999999999999999999999999999999987 68999999999964
No 182
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=96.86 E-value=0.0019 Score=58.24 Aligned_cols=49 Identities=20% Similarity=0.234 Sum_probs=45.0
Q ss_pred ccccceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHH
Q 003801 602 VVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLIT 656 (794)
Q Consensus 602 iM~~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~ 656 (794)
+|.+++.++++++++.++.+.|.+++.+.+||+++ ++++|+|+++|+.+
T Consensus 56 ~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVv~~------~~~~Gvvt~~dl~~ 104 (105)
T cd04591 56 YIDPSPFTVSPRTSLEKVHQLFRKLGLRHLLVVDE------GRLVGIITRKDLLK 104 (105)
T ss_pred hccCCCceECCCCcHHHHHHHHHHcCCCEEEEEEC------CeEEEEEEhhhhhc
Confidence 78888999999999999999999999999999964 79999999999853
No 183
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.86 E-value=0.0016 Score=58.53 Aligned_cols=54 Identities=17% Similarity=0.245 Sum_probs=49.0
Q ss_pred eeccccccceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHH
Q 003801 598 TVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLIT 656 (794)
Q Consensus 598 ~v~diM~~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~ 656 (794)
+++++|.+++.++++++++.++++.|.+++...+||++++ ++++|+|++.|+..
T Consensus 56 ~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~-----~~~~G~v~~~di~~ 109 (110)
T cd04605 56 SVEDIMTRNVITATPDEPIDVAARKMERHNISALPVVDAE-----NRVIGIITSEDISK 109 (110)
T ss_pred CHHHhcCCCCeEECCCCcHHHHHHHHHHhCCCEEeEECCC-----CcEEEEEEHHHhhh
Confidence 4778898899999999999999999999988999999986 89999999999853
No 184
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=96.85 E-value=0.0015 Score=75.35 Aligned_cols=57 Identities=19% Similarity=0.232 Sum_probs=52.4
Q ss_pred cceecccccc--ceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHH
Q 003801 596 QLTVGDVVTA--PLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITL 657 (794)
Q Consensus 596 ~l~v~diM~~--~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~l 657 (794)
+.+++|+|++ +++++++++++.++++.|.+++.+.+||||++ ++++|+|+++|+++.
T Consensus 160 ~~~V~dIMt~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~~-----g~LvGIIT~~Dilk~ 218 (502)
T PRK07107 160 DTKVKDFMTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVDKN-----GNLVYLVFRKDYDSH 218 (502)
T ss_pred CCCHHHHhCCCCCeEEECCCCcHHHHHHHHHHcCCCEEEEEcCC-----CeEEEEEEhHHHHhc
Confidence 4679999996 88999999999999999999999999999987 799999999999764
No 185
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=96.85 E-value=0.0017 Score=74.48 Aligned_cols=59 Identities=20% Similarity=0.251 Sum_probs=54.0
Q ss_pred ceeccccccceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHh
Q 003801 597 LTVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKK 660 (794)
Q Consensus 597 l~v~diM~~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~ 660 (794)
.+++|+|+++++++++++++.++++.|.+++.+.+||+|++ ++++|+|+++||++....
T Consensus 148 ~~V~diMt~~~itV~~d~sL~eAl~lM~~~~i~~LPVVD~~-----g~lvGIIT~~DIl~~~~~ 206 (479)
T PRK07807 148 TQVRDVMSTDLVTLPAGTDPREAFDLLEAARVKLAPVVDAD-----GRLVGVLTRTGALRATIY 206 (479)
T ss_pred CCHHHhccCCceEECCCCcHHHHHHHHHhcCCCEEEEEcCC-----CeEEEEEEHHHHHHHhhC
Confidence 35889999999999999999999999999999999999987 799999999999876543
No 186
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=96.85 E-value=0.0016 Score=71.39 Aligned_cols=55 Identities=22% Similarity=0.244 Sum_probs=51.0
Q ss_pred ceeccccccceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHH
Q 003801 597 LTVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLIT 656 (794)
Q Consensus 597 l~v~diM~~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~ 656 (794)
.+++|+|++++.++.+++++.++++.|.+++.+.+||||++ ++++|+|+++|+++
T Consensus 263 ~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-----~~lvGvIt~~di~~ 317 (321)
T PRK11543 263 TPVNEAMTRGGTTLQAQSRAIDAKEILMKRKITAAPVVDEN-----GKLTGAINLQDFYQ 317 (321)
T ss_pred CcHHHhcCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCC-----CeEEEEEEHHHHHh
Confidence 35889999999999999999999999999999999999987 79999999999964
No 187
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=96.85 E-value=0.0018 Score=58.93 Aligned_cols=57 Identities=23% Similarity=0.389 Sum_probs=49.8
Q ss_pred ceeccccccceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHH
Q 003801 597 LTVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLIT 656 (794)
Q Consensus 597 l~v~diM~~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~ 656 (794)
.++.++|.+++.++.+++++.++++.|.+++...+||+|++ +.++++|+|+++|+++
T Consensus 58 ~~~~~~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~Vvd~~---~~~~~~Gvit~~di~~ 114 (115)
T cd04593 58 SAVDEVATPPLLTVHPDEPLAHALDRMASRGLRQLPVVDRG---NPGQVLGLLTRENVLL 114 (115)
T ss_pred ccHHHhccCCceEECCCCCHHHHHHHHHHcCCceeeEEeCC---CCCeEEEEEEhHHhhc
Confidence 34778899999999999999999999999999999999874 2268999999999853
No 188
>COG0517 FOG: CBS domain [General function prediction only]
Probab=96.83 E-value=0.002 Score=58.47 Aligned_cols=52 Identities=19% Similarity=0.357 Sum_probs=48.8
Q ss_pred eeccccccceeEEeccccHHHHHHHHhc-CCCCeeEEeeCCCCCCCC-eEEEEEeHHHH
Q 003801 598 TVGDVVTAPLQLFHGIEKAGNVVHVLRT-TRHNGFPVIDENPLSETP-ILYGLILRAHL 654 (794)
Q Consensus 598 ~v~diM~~~vv~l~~~~sv~~a~~~L~~-~~~~~fPVVd~~~~~~~~-~l~GiI~r~dL 654 (794)
++.++|+.+++++.+++++.++.+.|.+ .+++.+||+|++ + +++|+++++|+
T Consensus 63 ~v~~v~~~~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~~-----~~~lvGivt~~di 116 (117)
T COG0517 63 PVKEVMTKPVVTVDPDTPLEEALELMVERHKIRRLPVVDDD-----GGKLVGIITLSDI 116 (117)
T ss_pred cHHHhccCCcEEECCCCCHHHHHHHHHHHcCcCeEEEEECC-----CCeEEEEEEHHHc
Confidence 6899999999999999999999999999 699999999986 5 99999999987
No 189
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=96.81 E-value=0.0022 Score=57.64 Aligned_cols=55 Identities=24% Similarity=0.352 Sum_probs=50.0
Q ss_pred ceeccccccceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHH
Q 003801 597 LTVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLIT 656 (794)
Q Consensus 597 l~v~diM~~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~ 656 (794)
+++.++|.+++.++++++++.++++.|.+++.+.+||+|++ ++++|+|+..|+.+
T Consensus 56 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~-----~~~~G~it~~di~~ 110 (111)
T cd04612 56 VLVGDVMTRDPVTASPDETLRDALKRMAERDIGRLPVVDDS-----GRLVGIVSRSDLLR 110 (111)
T ss_pred cCHHHhccCCCeEECCCCCHHHHHHHHHhCCCCeeeEEcCC-----CCEEEEEEHHHhhh
Confidence 46788999999999999999999999999999999999886 79999999999853
No 190
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=96.80 E-value=0.0022 Score=57.89 Aligned_cols=55 Identities=18% Similarity=0.237 Sum_probs=49.4
Q ss_pred cceeccccccceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHH
Q 003801 596 QLTVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLIT 656 (794)
Q Consensus 596 ~l~v~diM~~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~ 656 (794)
..+++++|.+++.++++++++.++++.|.+++...+||+|+ ++++|+|+.+|+.+
T Consensus 56 ~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~------~~~~G~it~~dl~~ 110 (111)
T cd04589 56 STPVGEIATFPLITVDPDDFLFNALLLMTRHRIHRVVVREG------GEVVGVLEQTDLLS 110 (111)
T ss_pred CCCHHHHhCCCcEEECCCCcHHHHHHHHHHhCccEEEEeeC------CEEEEEEEhHHhhc
Confidence 34688899989999999999999999999999999999986 68999999999853
No 191
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=96.80 E-value=0.002 Score=73.90 Aligned_cols=59 Identities=15% Similarity=0.225 Sum_probs=54.1
Q ss_pred ceeccccccceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHh
Q 003801 597 LTVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKK 660 (794)
Q Consensus 597 l~v~diM~~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~ 660 (794)
.+++++|+++++++++++++.+++++|.+++.+.+||+|++ ++++|+|+++||++....
T Consensus 146 ~~V~dIMt~~litv~~~~sL~eAl~lM~~~~i~~LPVVD~~-----g~LvGIIT~~DLl~~~~~ 204 (475)
T TIGR01303 146 TQVRDIMSTDLVTAPADTEPRKAFDLLEHAPRDVAPLVDAD-----GTLAGILTRTGALRATIY 204 (475)
T ss_pred CCHHHHccCCceEeCCCCcHHHHHHHHHHcCCCEEEEEcCC-----CeEEEEEEHHHHHHHHhC
Confidence 46889999999999999999999999999999999999987 899999999999876554
No 192
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=96.78 E-value=0.0061 Score=68.07 Aligned_cols=134 Identities=17% Similarity=0.179 Sum_probs=98.2
Q ss_pred ceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCCCCCcccccchhhhhhc
Q 003801 606 PLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNPTVNDAFSQFSAVDFAK 685 (794)
Q Consensus 606 ~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~d~~~ 685 (794)
+.+.+.+..++-++...+-+.+++.+||+|.+ .+.+..+++-+-+++.+........ ...++.
T Consensus 163 ~~~~i~p~~s~l~~~~~l~~~~~~rvpv~d~~----~~~v~~ilt~~rIl~~l~~~~~~~~-------------~~~~l~ 225 (381)
T KOG1764|consen 163 PFVSISPESSLLDAVLLLIKSRIHRVPVIDPE----TGEVLYILTQRRILKFLWLNGRLLP-------------LPSLLS 225 (381)
T ss_pred CceeecCcHHHHHHHHHHHhCCccceeeeccc----ccceeeehhHHHHHHHHHHhhcccc-------------cHHHhh
Confidence 44789999999999999999999999999943 3799999999999887765321100 011110
Q ss_pred cCCCCCCCccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCcEEEEEecccccH
Q 003801 686 RGSGNGDKIEDIELSEEEMEMYVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHDFMP 765 (794)
Q Consensus 686 ~~~~~~~~i~di~~~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~vvGIITr~Dll~ 765 (794)
.++.|+.+ -+......+.+++++.+|+++|++.++..+||||+ .|+.+|++++.|+..
T Consensus 226 ------~s~~dl~i-------------g~~~~i~~i~~~~~v~~al~~m~~~~is~lpvV~~---~g~~v~~~s~~Dv~~ 283 (381)
T KOG1764|consen 226 ------KSLSDLGI-------------GTWSNIASISEDTPVIEALKIMSERRISALPVVDE---NGKKVGNYSRFDVIH 283 (381)
T ss_pred ------CCHHHhCc-------------chhhhheeecCCCcHHHHHHHHHhcCcCcceEEcC---CCceecceehhhhhh
Confidence 01111111 11124568899999999999999999999999998 788899999999998
Q ss_pred HHHHhcCcccccc
Q 003801 766 EHILALNPLLARS 778 (794)
Q Consensus 766 ~~~~~~~~~l~~~ 778 (794)
.....-+..+...
T Consensus 284 l~~~~~~~~~~~~ 296 (381)
T KOG1764|consen 284 LAREGTYNNLDLS 296 (381)
T ss_pred hhhcCccCccchh
Confidence 7666555554433
No 193
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.77 E-value=0.0023 Score=56.91 Aligned_cols=53 Identities=17% Similarity=0.250 Sum_probs=48.5
Q ss_pred ceeccccccceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHH
Q 003801 597 LTVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLI 655 (794)
Q Consensus 597 l~v~diM~~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~ 655 (794)
-++.++|.+++.++++++++.++++.|.+++...+||+|+ ++++|+|+.+|++
T Consensus 51 ~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~------~~~~G~it~~~l~ 103 (105)
T cd04599 51 RLVADAMTREVVTISPEASLLEAKRLMEEKKIERLPVLRE------RKLVGIITKGTIA 103 (105)
T ss_pred CCHHHHccCCCEEECCCCCHHHHHHHHHHcCCCEeeEEEC------CEEEEEEEHHHhc
Confidence 3577889999999999999999999999999999999986 6999999999984
No 194
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=96.77 E-value=0.0021 Score=57.54 Aligned_cols=52 Identities=15% Similarity=0.248 Sum_probs=47.4
Q ss_pred eeccccccceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHH
Q 003801 598 TVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLI 655 (794)
Q Consensus 598 ~v~diM~~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~ 655 (794)
++.++|.++..++++++++.++++.|.+++.+.+||+|+ ++++|+|+++|+.
T Consensus 51 ~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~------~~~iGvit~~dl~ 102 (104)
T cd04594 51 DVVDYIVRGIPYVRLTSTAEEAWEVMMKNKTRWCPVVDD------GKFKGIVTLDSIL 102 (104)
T ss_pred chhhhhhcCCcEEcCCCCHHHHHHHHHHcCcceEEEEEC------CEEEEEEEHHHhh
Confidence 467788888899999999999999999999999999984 7999999999985
No 195
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.77 E-value=0.0021 Score=59.70 Aligned_cols=57 Identities=12% Similarity=0.278 Sum_probs=49.4
Q ss_pred cceeccccccceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHH
Q 003801 596 QLTVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLI 655 (794)
Q Consensus 596 ~l~v~diM~~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~ 655 (794)
..++.++|.++++++++++++.++++.|.+.+...+||++++ ++++++|+|+++|++
T Consensus 70 ~~~~~~~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~---~~~~~~Gvit~~di~ 126 (128)
T cd04632 70 DLPVYDAMSSPVITASPNDSVRDAVDRMLENDDSSVVVVTPD---DDTKVVGILTKKDVL 126 (128)
T ss_pred cCcHHHHhcCCCceECCCCcHHHHHHHHHhCCCCeEeEeccC---CCCcEEEEEEhHhhh
Confidence 456889999999999999999999999999988999998642 227899999999985
No 196
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.76 E-value=0.0022 Score=57.83 Aligned_cols=53 Identities=15% Similarity=0.351 Sum_probs=48.6
Q ss_pred ceeccccccceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHH
Q 003801 597 LTVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLI 655 (794)
Q Consensus 597 l~v~diM~~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~ 655 (794)
.++.++|.+++.++.+++++.++++.|.+++...+||+|+ ++++|+|++.|++
T Consensus 57 ~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~------~~~~G~it~~di~ 109 (111)
T cd04626 57 KKVFNIVSQDVFYVNEEDTIDEALDIMREKQIGRLPVVDD------NKLIGVVRTKDIL 109 (111)
T ss_pred CcHHHHhcCCcEEEcCCCcHHHHHHHHHHcCCCeeeEeEC------CEEEEEEEhHHhc
Confidence 4678899999999999999999999999999999999987 6899999999984
No 197
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.75 E-value=0.0016 Score=59.16 Aligned_cols=55 Identities=27% Similarity=0.355 Sum_probs=48.1
Q ss_pred cceecccccc--ceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHH
Q 003801 596 QLTVGDVVTA--PLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLI 655 (794)
Q Consensus 596 ~l~v~diM~~--~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~ 655 (794)
+.++.++|.+ ++.++.+++++.++++.|++++.+.+||+|++ ++++|+++.+|++
T Consensus 56 ~~~v~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~~~-----~~~~Gvl~~~di~ 112 (114)
T cd04801 56 QTTVIQVMTPAAKLVTVLSEESLAEVLKLLEEQGLDELAVVEDS-----GQVIGLITEADLL 112 (114)
T ss_pred ccchhhhhcccccceEECCCCcHHHHHHHHHHCCCCeeEEEcCC-----CcEEEEEecccee
Confidence 3467888874 36689999999999999999999999999986 7999999999884
No 198
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.75 E-value=0.0027 Score=58.97 Aligned_cols=51 Identities=22% Similarity=0.230 Sum_probs=46.4
Q ss_pred ccccccceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHH
Q 003801 600 GDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLI 655 (794)
Q Consensus 600 ~diM~~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~ 655 (794)
.+.|.+++.++++++++.++++.|.+++.+.+||+|++ ++++|+|+.+|++
T Consensus 74 ~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~-----~~~~Giit~~dil 124 (126)
T cd04642 74 DGVKSRPLITCTPSSTLKEVITKLVANKVHRVWVVDEE-----GKPIGVITLTDII 124 (126)
T ss_pred cccccCCCeEECCCCcHHHHHHHHHHhCCcEEEEECCC-----CCEEEEEEHHHHh
Confidence 35677889999999999999999999999999999986 7999999999985
No 199
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.75 E-value=0.002 Score=59.11 Aligned_cols=55 Identities=25% Similarity=0.521 Sum_probs=50.1
Q ss_pred ccceeccccccceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHH
Q 003801 595 RQLTVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLI 655 (794)
Q Consensus 595 ~~l~v~diM~~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~ 655 (794)
...++.++|..+..++++++++.++++.|.+.+.+.+||+|+ ++++|+|+++|++
T Consensus 65 ~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~------~~~~Gvi~~~dl~ 119 (121)
T cd04633 65 RNLPVSDIMTRPVITIEPDTSVSDVASLMLENNIGGLPVVDD------GKLVGIVTRTDIL 119 (121)
T ss_pred hccCHHHHccCCceEECCCCcHHHHHHHHHHcCCCcccEEEC------CEEEEEEEHHHhh
Confidence 456788999999999999999999999999999999999987 6899999999985
No 200
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=96.73 E-value=0.0025 Score=73.80 Aligned_cols=60 Identities=17% Similarity=0.247 Sum_probs=54.5
Q ss_pred cceeccccccc--eeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHh
Q 003801 596 QLTVGDVVTAP--LQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKK 660 (794)
Q Consensus 596 ~l~v~diM~~~--vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~ 660 (794)
+.+++++|+++ ++++++++++.++++.|.+++.+.+||||++ ++++|+|+++|+++.+..
T Consensus 162 ~~~V~eIMt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~-----g~LvGvITr~DIlk~~~~ 223 (505)
T PLN02274 162 ETKLSEVMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNED-----GELVDLVTRTDVKRVKGY 223 (505)
T ss_pred CCcHHHHhccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcCC-----CeEEEEEEHHHHHHHhhC
Confidence 45789999976 8899999999999999999999999999987 899999999999887654
No 201
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.72 E-value=0.0028 Score=59.40 Aligned_cols=54 Identities=20% Similarity=0.364 Sum_probs=49.2
Q ss_pred ceeccccccceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHH
Q 003801 597 LTVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLIT 656 (794)
Q Consensus 597 l~v~diM~~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~ 656 (794)
.++.++|.+++..+.+++++.++++.|.+.+.+.+||+|+ ++++|+|+.+|+++
T Consensus 78 ~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~------~~~iGvit~~dl~~ 131 (132)
T cd04636 78 KKVEEIMTKKVITVDEDTTIEDVARIMSKKNIKRLPVVDD------GKLVGIISRGDIIR 131 (132)
T ss_pred CCHHHhccCCceEECCCCcHHHHHHHHHHCCCCeeEEEEC------CEEEEEEEHHHhhc
Confidence 4788999999999999999999999999999999999987 68999999999853
No 202
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=96.72 E-value=0.0016 Score=73.55 Aligned_cols=64 Identities=22% Similarity=0.320 Sum_probs=57.5
Q ss_pred ccccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCcEEEEEecccccHHHHHhcCccc
Q 003801 709 DLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHDFMPEHILALNPLL 775 (794)
Q Consensus 709 dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~vvGIITr~Dll~~~~~~~~~~l 775 (794)
.+.+.++.+|++|++++|+.+|.+.|.+.|...++|+|+ +++..||||++|+.+..+.+..+..
T Consensus 150 rv~~~~~~~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~---~~~~~GIvT~~dl~~~v~~~g~~~~ 213 (610)
T COG2905 150 RVGEVKTLPAVTVSPQASIQDAARKMKDEGVSSLVVLDD---SGPLLGIVTRKDLRSRVIADGRSKT 213 (610)
T ss_pred HHHHHhcCCCcccCccCcHHHHHHHHHhcCCCeEEEEcC---CCCccceeehHHHHHHHHhcCCCcc
Confidence 356778899999999999999999999999999999998 8999999999999999888665544
No 203
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.71 E-value=0.0026 Score=57.34 Aligned_cols=54 Identities=20% Similarity=0.270 Sum_probs=49.1
Q ss_pred ceeccccccceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHH
Q 003801 597 LTVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLI 655 (794)
Q Consensus 597 l~v~diM~~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~ 655 (794)
.++.++|.+++.++.+++++.++++.|.+++...+||+|++ ++++|+++++|++
T Consensus 57 ~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~-----g~~~Gilt~~dl~ 110 (112)
T cd04624 57 TPVSEIMTRDLVTVDPDEPVAEAAKLMRKNNIRHHLVVDKG-----GELVGVISIRDLV 110 (112)
T ss_pred cCHHHhccCCCEEECCCCcHHHHHHHHHHcCccEEEEEcCC-----CcEEEEEEHHHhc
Confidence 45778999999999999999999999998888899999986 7899999999985
No 204
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=96.63 E-value=0.0032 Score=57.59 Aligned_cols=56 Identities=20% Similarity=0.423 Sum_probs=50.2
Q ss_pred ccceeccccccceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHH
Q 003801 595 RQLTVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLIT 656 (794)
Q Consensus 595 ~~l~v~diM~~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~ 656 (794)
...++.++|.+++.++++++++.++++.|.+.+++.+||+|+ ++++|+++.+|+.+
T Consensus 65 ~~~~v~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~~------~~~~Gvv~~~di~~ 120 (121)
T cd04584 65 LKMPVKEIMTKDVITVHPLDTVEEAALLMREHRIGCLPVVED------GRLVGIITETDLLR 120 (121)
T ss_pred cCcCHHHHhhCCCeEECCCCcHHHHHHHHHHcCCCeEEEeeC------CEEEEEEEHHHhhc
Confidence 346788999999999999999999999999999999999986 68999999999853
No 205
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.63 E-value=0.0031 Score=57.95 Aligned_cols=55 Identities=20% Similarity=0.233 Sum_probs=50.1
Q ss_pred ceeccccccceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHH
Q 003801 597 LTVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLIT 656 (794)
Q Consensus 597 l~v~diM~~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~ 656 (794)
.+++++|.++++++++++++.++++.|.+++.+.+||+|++ ++++|+++++|++.
T Consensus 67 ~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~~-----~~~~Gvit~~dll~ 121 (122)
T cd04637 67 RRAHQIMTRDPITVSPDTPVDEASKLLLENSISCLPVVDEN-----GQLIGIITWKDLLK 121 (122)
T ss_pred hHHHHhhcCCCeeeCCCCcHHHHHHHHHHcCCCeEeEECCC-----CCEEEEEEHHHhhh
Confidence 46889999999999999999999999999999999999886 79999999999853
No 206
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.61 E-value=0.0031 Score=58.57 Aligned_cols=46 Identities=28% Similarity=0.489 Sum_probs=42.3
Q ss_pred CCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCcEEEEEecccccH
Q 003801 717 SPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHDFMP 765 (794)
Q Consensus 717 ~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~vvGIITr~Dll~ 765 (794)
++.++.+++++.++.+.|++.+.+++||+|+ +|+++|+++.+|+.+
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~---~~~~~Giv~~~dl~~ 47 (126)
T cd04640 2 KPIVIPADTSIDEALELMIKHGVRLLLVVDS---DDNFIGVITAVDLLG 47 (126)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCcEEEEEcC---CCcEEEEEEHHHHhh
Confidence 3578999999999999999999999999997 789999999999986
No 207
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=96.55 E-value=0.0026 Score=73.19 Aligned_cols=60 Identities=22% Similarity=0.379 Sum_probs=53.9
Q ss_pred ccccccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCcEEEEEecccccHHHHH
Q 003801 707 YVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHDFMPEHIL 769 (794)
Q Consensus 707 ~idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~vvGIITr~Dll~~~~~ 769 (794)
.++++++|++++.++.+++++.++.+.|++.+.+.+||+|+ +++++|+||.+|+++....
T Consensus 334 ~~~v~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~---~~~~~Givt~~dl~~~~~~ 393 (454)
T TIGR01137 334 NATVKDLHLPAPVTVHPTETVGDAIEILREYGFDQLPVVTE---AGKVLGSVTLRELLSALFA 393 (454)
T ss_pred cCCHHHhCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcC---CCeEEEEEEHHHHHHHHhc
Confidence 36678999999999999999999999999999999999997 7899999999999875543
No 208
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=96.52 E-value=0.0028 Score=67.48 Aligned_cols=58 Identities=19% Similarity=0.272 Sum_probs=52.9
Q ss_pred ccccccccccC-CceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCcEEEEEecccccHHH
Q 003801 707 YVDLHPFANAS-PYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHDFMPEH 767 (794)
Q Consensus 707 ~idl~~im~~~-p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~vvGIITr~Dll~~~ 767 (794)
.+.++++|+++ +.++++++++.++.+.|++.+.+.+||+|+ +|+++|+||.+|+.+..
T Consensus 154 ~~~v~~im~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~---~g~~~Givt~~dl~~~~ 212 (268)
T TIGR00393 154 LVKVKDLMQTTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDE---NNQLVGVFTDGDLRRAL 212 (268)
T ss_pred hhhHHHHhCCCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeC---CCCEEEEEEcHHHHHHH
Confidence 46788999988 899999999999999999999999999997 78999999999998754
No 209
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=96.45 E-value=0.0054 Score=65.43 Aligned_cols=62 Identities=21% Similarity=0.278 Sum_probs=57.0
Q ss_pred cccceeccccccceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHh
Q 003801 594 MRQLTVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKK 660 (794)
Q Consensus 594 l~~l~v~diM~~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~ 660 (794)
.++.++..+|++++.++.+.+++..+.+.|-=.+.+-+||+|++ .+++|+|+|+|+++.|+.
T Consensus 246 ~~~t~ieKVMtknp~tv~~~tsVAsvaq~MiwE~iem~PVv~~n-----~~llGiitR~dvlk~lq~ 307 (432)
T COG4109 246 KPSTTIEKVMTKNPITVRAKTSVASVAQMMIWEGIEMLPVVDSN-----NTLLGIITRQDVLKSLQM 307 (432)
T ss_pred CCCccHHHHhccCCeeecccchHHHHHHHHHhccceeeeEEcCC-----ceEEEEEEHHHHHHHHHH
Confidence 45667888999999999999999999999999999999999998 899999999999998875
No 210
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=96.42 E-value=0.0044 Score=71.03 Aligned_cols=59 Identities=20% Similarity=0.314 Sum_probs=52.6
Q ss_pred hhcccccccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCC---CcEEEEEecccccH
Q 003801 704 MEMYVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNG---SPVMGILTRHDFMP 765 (794)
Q Consensus 704 ~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~---g~vvGIITr~Dll~ 765 (794)
+....++++.|.+++.++++++++.++.++|++.+.+.+||+|+ + ++++|+||++|+..
T Consensus 76 V~~Vk~~~~~~~~~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~---~~~~~~lvGIVt~rDL~~ 137 (450)
T TIGR01302 76 VKRVKRAENGIISDPVTISPETTVADVLELMERKGISGIPVVED---GDMTGKLVGIITKRDIRF 137 (450)
T ss_pred HhhhccccCceecCceEeCCCCCHHHHHHHHHHcCCCEEEEEeC---CCCCCeEEEEEEHHHHhh
Confidence 44456677889999999999999999999999999999999997 4 69999999999974
No 211
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=96.39 E-value=0.0068 Score=53.79 Aligned_cols=51 Identities=27% Similarity=0.349 Sum_probs=44.9
Q ss_pred CCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCcEEEEEecccccHHHHHh
Q 003801 717 SPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHDFMPEHILA 770 (794)
Q Consensus 717 ~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~vvGIITr~Dll~~~~~~ 770 (794)
++.++++++++.++.+.|.+.+.+++||+|+ +++++|+++++|+++.....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~~~~~G~v~~~~l~~~~~~~ 52 (113)
T cd02205 2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDD---DGRLVGIVTERDLLRALAEG 52 (113)
T ss_pred CceEecCCCCHHHHHHHHHhcCCceEEEECC---CCCEEEEEeHHHHHHHHHhc
Confidence 3567889999999999999999999999997 68999999999999866543
No 212
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=96.36 E-value=0.0053 Score=55.24 Aligned_cols=50 Identities=16% Similarity=0.211 Sum_probs=44.4
Q ss_pred CCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCC-CcEEEEEecccccHHHHH
Q 003801 717 SPYTVVETMSLAKALILFREVGLRHLLVIPKISNG-SPVMGILTRHDFMPEHIL 769 (794)
Q Consensus 717 ~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~-g~vvGIITr~Dll~~~~~ 769 (794)
+..++++++++.++.+.|.+.+.+.+||+|+ + ++++|++|.+|+++....
T Consensus 2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~---~~~~~~G~v~~~~l~~~~~~ 52 (111)
T cd04590 2 DIVALDADDTLEEILELIAESGHSRFPVYDG---DLDNIIGVVHVKDLLRALAE 52 (111)
T ss_pred ceEEEcCCCCHHHHHHHHhhCCCceEEEECC---CCceEEEEEEHHHHHHHHHc
Confidence 4568999999999999999999999999997 6 899999999999886543
No 213
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=96.30 E-value=0.015 Score=66.58 Aligned_cols=172 Identities=17% Similarity=0.156 Sum_probs=111.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHhhcccccCCCHHHHH
Q 003801 97 WSLCFLIGLIVGLIGFLNNLAVENIAGTKFVVTSNMMLANKFGMAFLSFSIPNLVLTLFASIVTATVAPVAAGSGIPEVK 176 (794)
Q Consensus 97 w~~~~liGv~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~p~a~GsGipev~ 176 (794)
.+..+++|+..|+.+.++..+--++.+.+... ..+.+. .+. .+..+.+. .++.++.|..+=.+..-+.
T Consensus 309 L~pFi~LGifgGl~G~~~ir~n~~~~~~rK~~-----~lg~~p---v~e---v~~vt~iT-aiIs~~np~~r~~~~e~i~ 376 (696)
T KOG0475|consen 309 LLPFILLGIFGGLWGAFFIRLNIRFCRFRKSS-----KLGKFP---VLE---VVFVTLVT-AIISLFNPETRFNMSELIT 376 (696)
T ss_pred chHHHHHHHhhhHHHHHHHHHHHHHHhccchh-----hccCCc---chh---HHHHHHHH-HHHHhcCHHHHhhHHHHHH
Confidence 34678899999999998887765555544332 111121 111 12233333 3556778877766555566
Q ss_pred HHHcCCCCCC-------------cchhHHHHHHHHHHHhhhccccccCCchhHHHHHHHHHHHhhccCccccc-cchhhh
Q 003801 177 AYLNGVDAPG-------------ILSFRTLVIKIIGSISAVSSSLLVGKAGPMVHTGACVASLLGQGGSKKYG-LTWKWL 242 (794)
Q Consensus 177 ~~lng~~~~~-------------~~~~~tl~~K~~~~~~sv~sGlsvG~EGP~vhiGa~igs~l~~~~s~~~~-l~~~~l 242 (794)
..+|.-.... ..-...++.|++.++++-|++.+.|---|...+||+.|..+|-+.-..+. -+|
T Consensus 377 ~Lf~~C~~~~s~~l~~~~~~~~~~~L~~a~i~k~~~t~ftfGakvP~GifvPSmaiGA~aGr~vG~~~e~l~~~~~~--- 453 (696)
T KOG0475|consen 377 ILFNKCSPSSSTSLPETTVYSAAILLLLALILKIALTIFTFGAKVPAGIFVPSLAIGAIAGRAVGIIVEQLAQNPDF--- 453 (696)
T ss_pred HHHhhcCCcccccCcccchHHHHHHHHHHHHHHHHHHHhhhhccCccceecchHHHHHHHHHHHHHHHHHHhcCCCc---
Confidence 6655332111 12245678999999999999999999999999999999988742111111 000
Q ss_pred cccC-ChhhhhhHHHHhhhhhhhhhhcccchhHHHHHHHHhh
Q 003801 243 RFFK-NDRDRRDFVTCGSAAGIAAAFRAPVGGLLFAIEEMAS 283 (794)
Q Consensus 243 ~~f~-~~~~~r~lv~~GaaAGvaaaF~APigGvLFalE~~~~ 283 (794)
..|- +-.--......||||-++..-|-|+.-|+--+|.+..
T Consensus 454 ~~fg~~ci~Pg~Ya~vGaAA~LsGvtrltvtlVVImFELTG~ 495 (696)
T KOG0475|consen 454 NLFGLSCATPGAYALVGAAATLSGVTRLTVTLVVIMFELTGA 495 (696)
T ss_pred cccchhhcCchHHHHHHHHHHhcCcceeeEEEEEEeeeccCc
Confidence 0010 1112334567899999999999999999999998866
No 214
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.24 E-value=0.0081 Score=54.76 Aligned_cols=55 Identities=11% Similarity=0.083 Sum_probs=47.0
Q ss_pred cceeccccccceeEEeccccHHHHHHHHhcCCCC---eeEEeeCCCCCCCCeEEEEEeHHHHH
Q 003801 596 QLTVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHN---GFPVIDENPLSETPILYGLILRAHLI 655 (794)
Q Consensus 596 ~l~v~diM~~~vv~l~~~~sv~~a~~~L~~~~~~---~fPVVd~~~~~~~~~l~GiI~r~dL~ 655 (794)
+.+++++|.+++.++++++++.++++.|.+.+.. ..|||+++ ++++|+|+..|++
T Consensus 60 ~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~-----~~~~Gvvs~~di~ 117 (119)
T cd04598 60 KKPVSEVMDPDPLIVEADTPLEEVSRLATGRDSQNLYDGFIVTEE-----GRYLGIGTVKDLL 117 (119)
T ss_pred CCcHHHhcCCCcEEecCCCCHHHHHHHHHcCCcccccccEEEeeC-----CeEEEEEEHHHHh
Confidence 4568899999999999999999999999887643 34688876 8999999999985
No 215
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=96.21 E-value=0.0054 Score=70.96 Aligned_cols=58 Identities=24% Similarity=0.310 Sum_probs=52.9
Q ss_pred cceecccccc--ceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHH
Q 003801 596 QLTVGDVVTA--PLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLL 658 (794)
Q Consensus 596 ~l~v~diM~~--~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL 658 (794)
+.+++|+|++ +++++++++++.|+.++|.+++.+.+||+|++ ++++|+|+++|+++..
T Consensus 158 ~~~V~diMt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~-----g~liGIIT~~DIl~~~ 217 (495)
T PTZ00314 158 STPVSEVMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVNDN-----GELVALVSRSDLKKNR 217 (495)
T ss_pred CCCHHHhhCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcCC-----CcEEEEEEehHhhhcc
Confidence 4578999998 89999999999999999999999999999987 8999999999997653
No 216
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=96.13 E-value=0.0083 Score=53.64 Aligned_cols=53 Identities=26% Similarity=0.349 Sum_probs=45.4
Q ss_pred ceeccccccceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHH
Q 003801 597 LTVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLIT 656 (794)
Q Consensus 597 l~v~diM~~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~ 656 (794)
.++.++|.+++.++++++++.++.+.|.+ .+ ..||+|++ ++++|+|+++|+..
T Consensus 57 ~~~~~~~~~~~~~v~~~~~l~~~~~~~~~-~~-~~~vv~~~-----~~~~Gvvt~~di~~ 109 (110)
T cd04609 57 LPVREVMGEPLPTVDPDAPIEELSELLDR-GN-VAVVVDEG-----GKFVGIITRADLLK 109 (110)
T ss_pred cCHHHHhcCCCceeCCCCcHHHHHHHHHh-CC-ceeEEecC-----CeEEEEEeHHHhhc
Confidence 46788998889999999999999999988 33 47899886 89999999999853
No 217
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.06 E-value=0.0095 Score=53.20 Aligned_cols=53 Identities=13% Similarity=0.231 Sum_probs=47.2
Q ss_pred eeccccccceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHH
Q 003801 598 TVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLIT 656 (794)
Q Consensus 598 ~v~diM~~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~ 656 (794)
.+.++|.+++.++++++++.++.+.|.+.+.+.+||+|+ ++++|+|+.+|++.
T Consensus 53 ~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~------~~~~G~it~~d~~~ 105 (106)
T cd04638 53 QLALLMTRDPPTVSPDDDVKEAAKLMVENNIRRVPVVDD------GKLVGIVTVADIVR 105 (106)
T ss_pred hHHHHhcCCCceECCCCCHHHHHHHHHHcCCCEEEEEEC------CEEEEEEEHHHhhc
Confidence 466788888899999999999999999999999999985 68999999999853
No 218
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=96.04 E-value=0.012 Score=65.91 Aligned_cols=49 Identities=12% Similarity=0.288 Sum_probs=41.8
Q ss_pred ccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCcEEEEEecccccHHHH
Q 003801 715 NASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHDFMPEHI 768 (794)
Q Consensus 715 ~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~vvGIITr~Dll~~~~ 768 (794)
.+...++++++++.+++....+.+.. ++|+| +|+++|+|++.++++...
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~----~~~~~g~~~~~~~~~~~~ 380 (382)
T TIGR03415 332 EAAPTVINPDTLMRDVLAARHRTGGA-ILLVE----NGRIVGVIGDDNIYHALL 380 (382)
T ss_pred cccCcccCCCCcHHHHHHHHhcCCCC-eEEee----CCeEEEEEeHHHHHHHHh
Confidence 45567899999999999999988876 78887 489999999999988654
No 219
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=96.00 E-value=0.0075 Score=68.28 Aligned_cols=57 Identities=16% Similarity=0.254 Sum_probs=50.0
Q ss_pred ccccccccc--CCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCcEEEEEecccccHH
Q 003801 708 VDLHPFANA--SPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHDFMPE 766 (794)
Q Consensus 708 idl~~im~~--~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~vvGIITr~Dll~~ 766 (794)
..++++|++ ++++++.+++++++.+.+++++.+++||.++ +.++++|||+.+|++..
T Consensus 191 ~~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~--~~d~ivGiv~~kDll~~ 249 (408)
T TIGR03520 191 TDTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKE--TIDNITGVLYIKDLLPH 249 (408)
T ss_pred CEeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcC--CCCceEEEEEHHHHHhH
Confidence 356788886 7899999999999999999999999999986 23689999999999864
No 220
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=95.99 E-value=0.012 Score=56.16 Aligned_cols=54 Identities=17% Similarity=0.368 Sum_probs=49.2
Q ss_pred cceeccccccceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHH
Q 003801 596 QLTVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLI 655 (794)
Q Consensus 596 ~l~v~diM~~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~ 655 (794)
..++.++|.+++.++++++++.++++.|.+.+...+||+++ ++++|+|+.+|++
T Consensus 88 ~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~------~~~~Gvvt~~dl~ 141 (143)
T cd04634 88 KMKVRDIMTKKVITISPDASIEDAAELMVRHKIKRLPVVED------GRLVGIVTRGDII 141 (143)
T ss_pred cCCHHHHcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC------CEEEEEEEHHHhh
Confidence 45688899999999999999999999999999999999987 6899999999985
No 221
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.58 E-value=0.012 Score=62.47 Aligned_cols=111 Identities=18% Similarity=0.205 Sum_probs=79.1
Q ss_pred cccceeccccccc--eeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCCCC
Q 003801 594 MRQLTVGDVVTAP--LQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNPTV 671 (794)
Q Consensus 594 l~~l~v~diM~~~--vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~~~ 671 (794)
.+-++++++|.+. ...-.+...-..+.+.+++.....+.+++.. ++.+|+|+.+++...
T Consensus 271 ~~VltA~~IM~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~-----~~~~g~v~~~~~~~~-------------- 331 (386)
T COG4175 271 SRVLTAKDIMRRPDLLIRKTPGDGPRVALKLLRDEGREYGYAVDRG-----NKFVGVVSIDSLVKA-------------- 331 (386)
T ss_pred hheeeHHHhhcccccccccccccccchhhhhhhhccchhhHHHhcc-----CceeeEEeccchhcc--------------
Confidence 4567888888852 2122222333456677777776666677754 678999987776321
Q ss_pred CcccccchhhhhhccCCCCCCCccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCC
Q 003801 672 NDAFSQFSAVDFAKRGSGNGDKIEDIELSEEEMEMYVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNG 751 (794)
Q Consensus 672 ~~~~~~~~~~d~~~~~~~~~~~i~di~~~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~ 751 (794)
.+++.+.++..++++.+.....++.+.. ++|+|+ +
T Consensus 332 -----------------------------------------~~~~~~~~v~~d~~~~~~~~~~~~~~~p-~aVvde---~ 366 (386)
T COG4175 332 -----------------------------------------ALIDDVLTVDADTPLSEILARIRQAPCP-VAVVDE---D 366 (386)
T ss_pred -----------------------------------------cccccccccCccchHHHHHHHHhcCCCc-eeEEcC---C
Confidence 1234556889999999999988887765 889998 8
Q ss_pred CcEEEEEecccccHHHH
Q 003801 752 SPVMGILTRHDFMPEHI 768 (794)
Q Consensus 752 g~vvGIITr~Dll~~~~ 768 (794)
++++|+|++.++++...
T Consensus 367 ~r~vG~i~~~~vl~aL~ 383 (386)
T COG4175 367 GRYVGIISRGELLEALA 383 (386)
T ss_pred CcEEEEecHHHHHHHHh
Confidence 99999999999987654
No 222
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=95.57 E-value=0.017 Score=62.34 Aligned_cols=57 Identities=18% Similarity=0.265 Sum_probs=50.7
Q ss_pred eeccccccceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHh
Q 003801 598 TVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKK 660 (794)
Q Consensus 598 ~v~diM~~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~ 660 (794)
+++++|.+++ ++++++++.++++.|++++.+..||+|+. +.++|+||.+|++..+..
T Consensus 134 ~l~~l~r~~~-~V~e~~~l~~~L~~m~~~~~~~a~VvDe~-----G~viGiVTleDIle~ivG 190 (292)
T PRK15094 134 SMDKVLRQAV-VVPESKRVDRMLKEFRSQRYHMAIVIDEF-----GGVSGLVTIEDILELIVG 190 (292)
T ss_pred CHHHHcCCCc-CcCCCCcHHHHHHHHHhcCCEEEEEEeCC-----CCEEEEeEHHHHHHHHhC
Confidence 4678887655 89999999999999999999999999987 789999999999887764
No 223
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=95.52 E-value=0.016 Score=65.82 Aligned_cols=61 Identities=16% Similarity=0.274 Sum_probs=56.8
Q ss_pred ccceeccccccceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHh
Q 003801 595 RQLTVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKK 660 (794)
Q Consensus 595 ~~l~v~diM~~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~ 660 (794)
.+.+++|+|.+++++++++++-+++.+.+++++.-..||||++ ++++|+|+.+|++..++.
T Consensus 194 ~~~~i~~im~~~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~~-----~~LiG~itiDDiidvi~e 254 (451)
T COG2239 194 PDELLKDLMEDDVVSVLADDDQEEVARLFEKYDLLAVPVVDED-----NRLIGIITIDDIIDVIEE 254 (451)
T ss_pred cHhHHHHHhcccceeecccCCHHHHHHHHHHhCCeecceECCC-----CceeeeeeHHHHHHHHHH
Confidence 3567899999999999999999999999999999999999998 899999999999988875
No 224
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=95.16 E-value=0.036 Score=61.71 Aligned_cols=57 Identities=21% Similarity=0.297 Sum_probs=51.6
Q ss_pred eeccccccceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHh
Q 003801 598 TVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKK 660 (794)
Q Consensus 598 ~v~diM~~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~ 660 (794)
.+.+.|.+++.++++++++.+++..+.++++. +||+|++ ++++|+|++.+++..|.+
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~-----~~~~g~i~~~~~~~~~~~ 359 (363)
T TIGR01186 303 GLQDVLIDDIYTVDAGTLLRETVRKVLKAGIK-VPVVDED-----QRLVGIVTRGSLVDALYD 359 (363)
T ss_pred chhhhhccCCceECCCCcHHHHHHHHHhCCCC-EEEECCC-----CcEEEEEEHHHHHHHHHh
Confidence 46677888888999999999999999999998 9999987 899999999999988764
No 225
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=93.83 E-value=0.13 Score=58.15 Aligned_cols=58 Identities=14% Similarity=0.255 Sum_probs=50.7
Q ss_pred eeccccccceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhc
Q 003801 598 TVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKK 661 (794)
Q Consensus 598 ~v~diM~~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~ 661 (794)
++++.|.++..++++++++.+++..+.++.+. +||||++ ++++|+|++.+++..|...
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~-----~~~~g~~~~~~~~~~~~~~ 395 (400)
T PRK10070 338 GLDAALIDAPLAVDAQTPLSELLSHVGQAPCA-VPVVDED-----QQYVGIISKGMLLRALDRE 395 (400)
T ss_pred chhhhhccCCceeCCCCCHHHHHHHHHhCCCc-EEEECCC-----CcEEEEEEHHHHHHHHHhc
Confidence 46667777888999999999999999887766 9999987 9999999999999988654
No 226
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=92.62 E-value=0.41 Score=55.14 Aligned_cols=106 Identities=18% Similarity=0.084 Sum_probs=76.3
Q ss_pred HHHHHHHHHHhhcCCCCcccchHHHHHHHHHhHHHHHHhcc------------ccCcchHHHHHHHHhhhhhhhcchhhH
Q 003801 470 FVTCFSLSVLSYGIVAPAGLFVPAIVTGASYGRFVGMLVGS------------HSNLNHGLYAVLGAASFLGGSMRMTVS 537 (794)
Q Consensus 470 ~~~k~~~t~~t~g~g~~gG~f~Psl~iGa~~G~l~g~~~~~------------~~~~~~~~~alvGaaa~l~g~~r~pls 537 (794)
++.|.+-.+.+.+.|.-.|---|++=.||++|..+|+-=.. -..-|---+..+|+||-.+++.|+|+.
T Consensus 189 L~~Ki~Gvi~sV~gGL~~GKEGPMIHsGa~Vaagl~QG~S~~~r~~~r~fr~FrnDrdrRD~VscGaAAGVaAAF~APvG 268 (762)
T KOG0474|consen 189 LIVKILGVIFSVAGGLAVGKEGPMIHSGSVVAAGLGQGGSTSLRKDWRWFRYFRNDRDRRDLVSCGAAAGVAAAFRAPVG 268 (762)
T ss_pred hHHhHhhhhhhhhhhhhccCcCCeeehhHHHHhcccCCCccchhhhhhhhhhhcccchhhhhhhcchHHhHHHHhCCCcc
Confidence 35788888899999999999999999999999999875322 133455668899999999999999999
Q ss_pred HHHHHHHHhCCc---chHHHHHHHHHHHHHHHhhhcchHHH
Q 003801 538 LCVIILELTNNL---LLLPMIMLVLLISKTVADAFNGNIYD 575 (794)
Q Consensus 538 ~~vi~~ElTg~~---~~l~pimia~~ia~~v~~~~~~~iy~ 575 (794)
.+++.+|=..+. .++-=+..+++++-.+-+.|-.+.|.
T Consensus 269 GvLFaLEE~aS~Wnq~L~WR~fFss~i~~f~l~~~i~~~~~ 309 (762)
T KOG0474|consen 269 GVLFALEEGASWWNQALLWRTFFSSAIVAFVLRAFILSCLS 309 (762)
T ss_pred ceEEEechhhHHHHhhHHHHHHHHhHHHHHhHHHHHHHHhc
Confidence 999999864433 23333444444444444433333333
No 227
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=92.37 E-value=0.13 Score=56.14 Aligned_cols=56 Identities=21% Similarity=0.278 Sum_probs=51.3
Q ss_pred cceeccccccceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHH
Q 003801 596 QLTVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLIT 656 (794)
Q Consensus 596 ~l~v~diM~~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~ 656 (794)
...+.|+|+++.++.+...++.++-++|++++...+||||++ ++++-+|+|.||.+
T Consensus 170 ~~~~~~vmt~~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~~-----gelva~~~rtDl~k 225 (503)
T KOG2550|consen 170 SLLVSDVMTKNPVTGAQGITLKEANEILKKIKKGKLPVVDDK-----GELVAMLSRTDLMK 225 (503)
T ss_pred cchhhhhcccccccccccccHHHHHHHHHhhhcCCcceeccC-----Cceeeeeehhhhhh
Confidence 456789999988899999999999999999999999999998 99999999999954
No 228
>PRK11573 hypothetical protein; Provisional
Probab=91.82 E-value=0.23 Score=56.31 Aligned_cols=57 Identities=4% Similarity=-0.050 Sum_probs=47.8
Q ss_pred cccccccc--CCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCcEEEEEecccccHHH
Q 003801 709 DLHPFANA--SPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHDFMPEH 767 (794)
Q Consensus 709 dl~~im~~--~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~vvGIITr~Dll~~~ 767 (794)
.++++|.+ +...++.+++++++.+++++.+..++||.++ +.++++|+|..+|++...
T Consensus 188 ~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~--~~D~IiGiv~~kDll~~~ 246 (413)
T PRK11573 188 TVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRD--SLDDAISMLRVREAYRLM 246 (413)
T ss_pred ChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcC--CCCceEEEEEHHHHHHHh
Confidence 35666654 5678999999999999999999999999976 246799999999998643
No 229
>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown]
Probab=90.25 E-value=0.41 Score=55.45 Aligned_cols=133 Identities=21% Similarity=0.198 Sum_probs=86.7
Q ss_pred ccccceecccccc--ceeEEeccccHH-HHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCC
Q 003801 593 YMRQLTVGDVVTA--PLQLFHGIEKAG-NVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNP 669 (794)
Q Consensus 593 ~l~~l~v~diM~~--~vv~l~~~~sv~-~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~ 669 (794)
.+..+.++|+|++ ++..+..+.+.. +.+....+.+|+.+||.+.++ ..-+|......+...+....
T Consensus 200 ~l~ek~~~evmtpi~~~f~l~~n~~l~~~~~~~i~~~g~sripv~~~~~----~~~i~~~L~~~~~~~~~~~~------- 268 (498)
T KOG2118|consen 200 ELTEKLVGEVMTPIEDVFALDANTKLDRETVGEIVKHGYSRIPVYEQEP----KNKIGGLLVMNLLRLLQVEV------- 268 (498)
T ss_pred HHHHHHHHHhccchhhheeeccccccchHHHhhHhhcCcceeeeccCcc----cchhhHHHHhhhhhhhcccc-------
Confidence 3567889999988 566666666665 555666789999999998863 34444433333333221100
Q ss_pred CCCcccccchhhhhhccCCCCCCCccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCC
Q 003801 670 TVNDAFSQFSAVDFAKRGSGNGDKIEDIELSEEEMEMYVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKIS 749 (794)
Q Consensus 670 ~~~~~~~~~~~~d~~~~~~~~~~~i~di~~~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~ 749 (794)
.....++...+......+++++++.+..+.|++... |+.|+.+
T Consensus 269 ----------------------------------~~~~~~v~~~~~~~l~~vp~~~~~~~~l~~~~~~~~-H~~~v~~-- 311 (498)
T KOG2118|consen 269 ----------------------------------PLEPLPVSESALLRLPLVPENMPLLDLLNEFQKGKS-HMAVVRN-- 311 (498)
T ss_pred ----------------------------------ccccccchhhhccccccCCCcccHHHHHHHHhhhhc-eeEEEec--
Confidence 001223455566677788999999999999987655 5556554
Q ss_pred CCCcEEEEEecccccHHHHHhcCccc
Q 003801 750 NGSPVMGILTRHDFMPEHILALNPLL 775 (794)
Q Consensus 750 ~~g~vvGIITr~Dll~~~~~~~~~~l 775 (794)
...-++++|..|+ .+..++...+.
T Consensus 312 -~~~~~~~~~l~~~-~~~~~ev~de~ 335 (498)
T KOG2118|consen 312 -GHVDIFVLTLEDL-EEVVKEVEDEE 335 (498)
T ss_pred -CCcceeeEeccch-hhhcceecccc
Confidence 5667999999998 66555444433
No 230
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=89.75 E-value=0.4 Score=54.78 Aligned_cols=61 Identities=13% Similarity=0.160 Sum_probs=51.3
Q ss_pred ccccccccc--CCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCcEEEEEecccccHHHHHh
Q 003801 708 VDLHPFANA--SPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHDFMPEHILA 770 (794)
Q Consensus 708 idl~~im~~--~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~vvGIITr~Dll~~~~~~ 770 (794)
..++++|++ +...++.+.+.+++.+.+++.+..++||.++ +.+.++|++..||++.+...+
T Consensus 206 ~~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~--~~D~iiGiv~~Kdll~~~~~~ 268 (429)
T COG1253 206 RTVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDG--DLDNIIGIVHVKDLLRALLDG 268 (429)
T ss_pred cEeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcC--CCCcEEEEEEHHHHHHHHhcC
Confidence 345677765 5567888999999999999999999999994 256799999999999987665
No 231
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=86.50 E-value=0.098 Score=53.17 Aligned_cols=61 Identities=20% Similarity=0.214 Sum_probs=50.0
Q ss_pred ccccccc--CCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCcEEEEEecccccHHHHHhcC
Q 003801 710 LHPFANA--SPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHDFMPEHILALN 772 (794)
Q Consensus 710 l~~im~~--~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~vvGIITr~Dll~~~~~~~~ 772 (794)
++++|-+ ...++..+.++.+....+.+....+.||+.+ ++..+.||+--|||++.+.....
T Consensus 69 vrDiMIPRSQM~~l~~~~~l~~~l~~iiesaHSRfPVi~e--dkD~v~GIL~AKDLL~~~~~~~~ 131 (293)
T COG4535 69 VRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISE--DKDHVEGILLAKDLLPFMRSDAE 131 (293)
T ss_pred HhhhcccHHHheeccccCCHHHHHHHHHHhccccCCcccC--CchhhhhhhhHHHHHHHhcCCcc
Confidence 4556643 4568899999999999999999999999975 36789999999999997665543
No 232
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=84.39 E-value=1.7 Score=48.78 Aligned_cols=54 Identities=13% Similarity=0.127 Sum_probs=44.6
Q ss_pred eccccccceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHh
Q 003801 599 VGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKK 660 (794)
Q Consensus 599 v~diM~~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~ 660 (794)
+.+ +.++..++++++++.+++....++++ .+||+|+ ++++|+|++.+++..|..
T Consensus 328 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~------~~~~g~~~~~~~~~~~~~ 381 (382)
T TIGR03415 328 VES-LEAAPTVINPDTLMRDVLAARHRTGG-AILLVEN------GRIVGVIGDDNIYHALLG 381 (382)
T ss_pred hhh-hcccCcccCCCCcHHHHHHHHhcCCC-CeEEeeC------CeEEEEEeHHHHHHHHhc
Confidence 444 55667789999999999998888776 4888885 799999999999887753
No 233
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=82.63 E-value=0.98 Score=53.19 Aligned_cols=66 Identities=9% Similarity=0.126 Sum_probs=56.3
Q ss_pred ccccccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCcEEEEEecccccHHHHHhcCc
Q 003801 707 YVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHDFMPEHILALNP 773 (794)
Q Consensus 707 ~idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~vvGIITr~Dll~~~~~~~~~ 773 (794)
.+.++++|.++..++..+++..|..+.+....+|.+|+||+ .+.--++|.|.|+.+......++-|
T Consensus 587 ~v~VE~iMV~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s-~esmiLlGSV~R~~L~~ll~~~ig~ 652 (931)
T KOG0476|consen 587 TVKVEHIMVTDVKYITKDTTYRELREALQTTTLRSFPLVES-KESMILLGSVARRYLTALLQRHIGP 652 (931)
T ss_pred EEEeeeeccccceeeeccCcHHHHHHHHHhCccceeccccC-cccceeeehhHHHHHHHHHHhhcCc
Confidence 46688999999999999999999999988887999999987 4456799999999998876664443
No 234
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=76.49 E-value=4.4 Score=43.69 Aligned_cols=53 Identities=17% Similarity=0.270 Sum_probs=45.1
Q ss_pred ccccceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHh
Q 003801 602 VVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKK 660 (794)
Q Consensus 602 iM~~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~ 660 (794)
.+.+++.++.+++++.+++...++.+ ..+||||++ ++++|+|++.+++.+|..
T Consensus 332 ~~~~~~~~v~~d~~~~~~~~~~~~~~-~p~aVvde~-----~r~vG~i~~~~vl~aL~~ 384 (386)
T COG4175 332 ALIDDVLTVDADTPLSEILARIRQAP-CPVAVVDED-----GRYVGIISRGELLEALAR 384 (386)
T ss_pred cccccccccCccchHHHHHHHHhcCC-CceeEEcCC-----CcEEEEecHHHHHHHHhc
Confidence 56678888999999999998887754 468999998 999999999999988754
No 235
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=69.62 E-value=5.4 Score=41.83 Aligned_cols=42 Identities=29% Similarity=0.337 Sum_probs=35.3
Q ss_pred cCCCCHHHHHHHHHHcCCCEEEEeecCCCCCcEEEEEecccccHH
Q 003801 722 VETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHDFMPE 766 (794)
Q Consensus 722 ~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~vvGIITr~Dll~~ 766 (794)
.......+++..+...+...+||+|+ +|+++|.||+.|++.+
T Consensus 267 ~~~~~~~~~ls~~~~~~~~~~~Vvd~---~g~~~G~vt~~~l~~~ 308 (309)
T COG1125 267 LEGFVDRDALSDFLARGRSVLPVVDE---DGRPLGTVTRADLLDE 308 (309)
T ss_pred ccchhhHHHHHHHHhcCCceeEEECC---CCcEeeEEEHHHHhhh
Confidence 34455566888888999999999998 8999999999999764
No 236
>PRK09765 PTS system 2-O-a-mannosyl-D-glycerate specific transporter subunit IIABC; Provisional
Probab=68.69 E-value=2.4e+02 Score=34.14 Aligned_cols=44 Identities=16% Similarity=0.238 Sum_probs=24.5
Q ss_pred HHhhhhhhhhhhcccch-hHH-HHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 003801 256 TCGSAAGIAAAFRAPVG-GLL-FAIEEMASWWRSALLWRAFFTTAIVAILLRAFIDI 310 (794)
Q Consensus 256 ~~GaaAGvaaaF~APig-GvL-FalE~~~~~~~~~~~~~~f~~~~va~~v~~~l~~~ 310 (794)
..|.+|.+.+.++ |. |++ |++..- +|.+.++++++.+...+...
T Consensus 526 ~~~~~a~i~g~~g--ITEpaIPfgv~~p---------~~~i~~~~iG~avgG~i~~~ 571 (631)
T PRK09765 526 ETGKSTWLLGLAG--ITEGAIPMAIEDP---------LRVIGSFVLGSMVTGAIVGA 571 (631)
T ss_pred HHHHHHHHHHHHh--cCcccHHHHHhcc---------chHHHHHHHHHHHHHHHHHH
Confidence 4566777777665 33 555 655432 24455666666665555443
No 237
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=66.86 E-value=3.2e+02 Score=33.84 Aligned_cols=83 Identities=22% Similarity=0.341 Sum_probs=47.1
Q ss_pred HHHHHhHHHHHHhccccCcchHHHHHHHHhhhhhhhcchh----------hHHHHHHHHHhCCcchHHHHHHHHHHHHHH
Q 003801 496 TGASYGRFVGMLVGSHSNLNHGLYAVLGAASFLGGSMRMT----------VSLCVIILELTNNLLLLPMIMLVLLISKTV 565 (794)
Q Consensus 496 iGa~~G~l~g~~~~~~~~~~~~~~alvGaaa~l~g~~r~p----------ls~~vi~~ElTg~~~~l~pimia~~ia~~v 565 (794)
+||+.|..+|.++.-.....+....+.|-+++++|..|-. ++.+++.+=..++..+.. .+.-+++|..+
T Consensus 197 ~Gaa~Gv~~Gli~~l~~~~~~~~~~~~af~GLlaG~fk~~gK~g~~~g~~l~~~il~~y~~~~~~~~~-~~~e~~ia~~l 275 (764)
T TIGR02865 197 AGAAGGVVIGVILGLANNANLYQIGVFGFAGLLGGIFKELGKIGTGIGYLVGFLILAFYTQGSVAFSL-ALYEALIATLL 275 (764)
T ss_pred HhHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhhccCCcceeeHHHHHHHHHHHHHhccchhHHH-HHHHHHHHHHH
Confidence 5788888888877654455566667777788888988643 222233332223333322 22344444444
Q ss_pred HhhhcchHHHHHHH
Q 003801 566 ADAFNGNIYDLIMK 579 (794)
Q Consensus 566 ~~~~~~~iy~~~l~ 579 (794)
--.++..+|+..-+
T Consensus 276 Fll~P~~~~~~~~~ 289 (764)
T TIGR02865 276 FLLIPNKIYKKLER 289 (764)
T ss_pred HHHhhHHHHHHHHh
Confidence 44446777776543
No 238
>PF10518 TAT_signal: TAT (twin-arginine translocation) pathway signal sequence; InterPro: IPR019546 The twin-arginine translocation (Tat) pathway serves the role of transporting folded proteins across energy-transducing membranes []. Homologues of the genes that encode the transport apparatus occur in archaea, bacteria, chloroplasts, and plant mitochondria []. In bacteria, the Tat pathway catalyses the export of proteins from the cytoplasm across the inner/cytoplasmic membrane. In chloroplasts, the Tat components are found in the thylakoid membrane and direct the import of proteins from the stroma. The Tat pathway acts separately from the general secretory (Sec) pathway, which transports proteins in an unfolded state []. It is generally accepted that the primary role of the Tat system is to translocate fully folded proteins across membranes. An example of proteins that need to be exported in their 3D conformation are redox proteins that have acquired complex multi-atom cofactors in the bacterial cytoplasm (or the chloroplast stroma or mitochondrial matrix). They include hydrogenases, formate dehydrogenases, nitrate reductases, trimethylamine N-oxide (TMAO) reductases and dimethyl sulphoxide (DMSO) reductases [, ]. The Tat system can also export whole heteroligomeric complexes in which some proteins have no Tat signal. This is the case of the DMSO reductase or formate dehydrogenase complexes. But there are also other cases where the physiological rationale for targeting a protein to the Tat signal is less obvious. Indeed, there are examples of homologous proteins that are in some cases targeted to the Tat pathway and in other cases to the Sec apparatus. Some examples are: copper nitrite reductases, flavin domains of flavocytochrome c and N-acetylmuramoyl-L-alanine amidases []. In halophilic archaea such as Halobacterium almost all secreted proteins appear to be Tat targeted. It has been proposed to be a response to the difficulties these organisms would otherwise face in successfully folding proteins extracellularly at high ionic strength []. The Tat signal peptide consists of three motifs: the positively charged N-terminal motif, the hydrophobic region and the C-terminal region that generally ends with a consensus short motif (A-x-A) specifying cleavage by signal peptidase. Sequence analysis revealed that signal peptides capable of targeting the Tat protein contain the consensus sequence [ST]-R-R-x-F-L-K. The nearly invariant twin-arginine gave rise to the pathway's name. In addition the h-region of Tat signal peptides is typically less hydrophobic than that of Sec-specific signal peptides [, ].
Probab=66.76 E-value=4.5 Score=26.82 Aligned_cols=23 Identities=43% Similarity=0.612 Sum_probs=20.4
Q ss_pred hhhhHHHHhhhhhhhhhhcccch
Q 003801 250 DRRDFVTCGSAAGIAAAFRAPVG 272 (794)
Q Consensus 250 ~~r~lv~~GaaAGvaaaF~APig 272 (794)
.||+|+-.+++++.++++.++.+
T Consensus 3 sRR~fLk~~~a~~a~~~~~~~~~ 25 (26)
T PF10518_consen 3 SRRQFLKGGAAAAAAAALGGCAG 25 (26)
T ss_pred cHHHHHHHHHHHHHHHHhccccC
Confidence 59999999999999999988764
No 239
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=59.47 E-value=13 Score=39.06 Aligned_cols=58 Identities=19% Similarity=0.224 Sum_probs=37.9
Q ss_pred cccceeccccccce----eEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHH
Q 003801 594 MRQLTVGDVVTAPL----QLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLIT 656 (794)
Q Consensus 594 l~~l~v~diM~~~v----v~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~ 656 (794)
+...++.|.|.+.. -.+.....-++++..+...+...+||+|++ ++++|.|++.+++.
T Consensus 246 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~~~~~~~~~Vvd~~-----g~~~G~vt~~~l~~ 307 (309)
T COG1125 246 LSLVSVADAVRRGEPADGEPLLEGFVDRDALSDFLARGRSVLPVVDED-----GRPLGTVTRADLLD 307 (309)
T ss_pred cchhhHHHhhcccccccCCccccchhhHHHHHHHHhcCCceeEEECCC-----CcEeeEEEHHHHhh
Confidence 34445555554422 112233344456666666677889999998 99999999999864
No 240
>PRK02509 hypothetical protein; Provisional
Probab=56.46 E-value=3e+02 Score=34.61 Aligned_cols=20 Identities=20% Similarity=0.496 Sum_probs=14.7
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 003801 340 DVPLVLLLGVVGGILGSLYN 359 (794)
Q Consensus 340 ~l~~~illGv~~Gl~g~~f~ 359 (794)
.+|...++.+++.+++.+|.
T Consensus 326 ~LP~~~iL~~ia~l~A~~~~ 345 (973)
T PRK02509 326 QLPVYTILSILAGIIAFWLL 345 (973)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 46677778888877777764
No 241
>PRK14216 camphor resistance protein CrcB; Provisional
Probab=46.28 E-value=50 Score=31.23 Aligned_cols=51 Identities=24% Similarity=0.335 Sum_probs=27.3
Q ss_pred hhhhHHHHhhhhhhhhhhcccchhHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 003801 250 DRRDFVTCGSAAGIAAAFRAPVGGLLFAIEEMASWWRSALLWRAFFTTAIVAILLRAF 307 (794)
Q Consensus 250 ~~r~lv~~GaaAGvaaaF~APigGvLFalE~~~~~~~~~~~~~~f~~~~va~~v~~~l 307 (794)
+.++++..+.+++++|..|-=++ .....+....-|-++..-+++++++..+
T Consensus 5 ~~~~~l~V~iGG~lGa~~Ry~l~-------~~~~~~~~~fP~gTl~vNv~GsfllG~~ 55 (132)
T PRK14216 5 DYRELAAVFAGGALGTLARAALS-------ELAAPDPARWPWPTFTVNVVGAFLLGYF 55 (132)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH-------HHHhccCCCCcHHHHHHHHHHHHHHHHH
Confidence 34566677777777777774332 2211111122345666666666665544
No 242
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=45.91 E-value=27 Score=32.57 Aligned_cols=17 Identities=24% Similarity=0.720 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 003801 342 PLVLLLGVVGGILGSLY 358 (794)
Q Consensus 342 ~~~illGv~~Gl~g~~f 358 (794)
+..+++|+++|++|.++
T Consensus 66 i~~Ii~gv~aGvIg~Il 82 (122)
T PF01102_consen 66 IIGIIFGVMAGVIGIIL 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred eeehhHHHHHHHHHHHH
Confidence 46789999999999775
No 243
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=41.84 E-value=52 Score=36.44 Aligned_cols=49 Identities=10% Similarity=0.091 Sum_probs=41.2
Q ss_pred ceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHH
Q 003801 606 PLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLK 659 (794)
Q Consensus 606 ~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~ 659 (794)
++..+++.+++.+-+..+++++.+---|||+- |.+.|+||.+|++..+-
T Consensus 276 epyFVPe~Tpl~~QL~~F~~~k~hialVVDEY-----G~i~GLVTLEDIlEEIV 324 (423)
T COG4536 276 EPYFVPEGTPLSDQLVAFQRNKKHIALVVDEY-----GDIQGLVTLEDILEEIV 324 (423)
T ss_pred CCeecCCCCcHHHHHHHHHHhcceEEEEEecc-----CcEEeeeeHHHHHHHHh
Confidence 45678999999999998888776666788887 89999999999977654
No 244
>PF10399 UCR_Fe-S_N: Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal; InterPro: IPR019470 This entry represents the TAT-signal region found in the iron-sulphur subunit of Ubiquinol-cytochrome C reductase (also known as the cytochrome bc1 complex). This enzymex is an oligomeric membrane protein complex that is a component of respiratory and photosynthetic electron transfer chains. It couples the transfer of electrons from ubiquinol to cytochrome c with the generation of a protein gradient across the membrane []. This entry is associated with IPR017941 from INTERPRO, IPR004192 from INTERPRO and IPR015248 from INTERPRO. ; GO: 0008121 ubiquinol-cytochrome-c reductase activity, 0055114 oxidation-reduction process; PDB: 1ZRT_R 2QJY_R 2FYN_L 2QJK_O 2QJP_I 2YIU_F.
Probab=41.10 E-value=20 Score=26.66 Aligned_cols=20 Identities=35% Similarity=0.594 Sum_probs=11.5
Q ss_pred ChhhhhhHH--HHhhhhhhhhh
Q 003801 247 NDRDRRDFV--TCGSAAGIAAA 266 (794)
Q Consensus 247 ~~~~~r~lv--~~GaaAGvaaa 266 (794)
.+..||+|+ +.++.++++++
T Consensus 7 ~~~~RRdFL~~at~~~gavG~~ 28 (41)
T PF10399_consen 7 VDPTRRDFLTIATSAVGAVGAA 28 (41)
T ss_dssp ---HHHHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHHH
Confidence 356788876 66666666654
No 245
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=37.26 E-value=55 Score=39.52 Aligned_cols=146 Identities=8% Similarity=0.005 Sum_probs=79.6
Q ss_pred chHHHHHHHHc--CCCccccccccccccceeccccccceeEEecccc-HHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEE
Q 003801 571 GNIYDLIMKAK--GFPYLETHVEPYMRQLTVGDVVTAPLQLFHGIEK-AGNVVHVLRTTRHNGFPVIDENPLSETPILYG 647 (794)
Q Consensus 571 ~~iy~~~l~~~--g~p~l~~~~~~~l~~l~v~diM~~~vv~l~~~~s-v~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~G 647 (794)
..|.+.+.+-+ +.|..... +..+..-...+.+.++-..+....+ +.++.+.+..++ ..+.+.|.+ |.++.
T Consensus 14 ~~I~~SW~Rc~~~~~p~~~~~-~~~l~~~~~~~~~~~~~~ll~~a~~~l~~l~~~l~~~~-~~~~l~D~~-----G~vL~ 86 (638)
T PRK11388 14 PLIATSWERCNKLMKRETWNV-PHQAQGVTFASIYRRKKALLTLGQAALEDAWEYMADRE-CALLILDET-----GCILS 86 (638)
T ss_pred hHHHHHHHHHHhcCCCcccCC-CCcCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCC-cEEEEEcCC-----ceEEE
Confidence 34555555544 33332211 2234444455555554444445555 556666776666 688899988 89999
Q ss_pred EEeHHHHHHHHHhccCCCCCCCCCCcccccchhhhhhccCCCCCCCccccccchhhhhcccccc-cccccCCceecCCCC
Q 003801 648 LILRAHLITLLKKKAFLPTPNPTVNDAFSQFSAVDFAKRGSGNGDKIEDIELSEEEMEMYVDLH-PFANASPYTVVETMS 726 (794)
Q Consensus 648 iI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~di~~~~~~~~~~idl~-~im~~~p~tV~~~~s 726 (794)
+....++...+....+..... ++++..... -+. -.....|+.|.-...
T Consensus 87 ~~g~~~~~~~~~~~~~~~G~~------------------------------w~E~~~GTn-aig~al~~~~pv~v~g~EH 135 (638)
T PRK11388 87 RNGDPQTLQQLSALGFNDGTY------------------------------CAEGIIGTN-ALSLAAISGQPVKTMGDQH 135 (638)
T ss_pred EeCCHHHHHHHHHcCCccCCc------------------------------cchhccCcC-HHHHHHhcCCceEEecHHH
Confidence 988888876655433221110 000000000 000 011245666665554
Q ss_pred HHHHHHHHHHcCCCEEEEeecCCCCCcEEEEEec
Q 003801 727 LAKALILFREVGLRHLLVIPKISNGSPVMGILTR 760 (794)
Q Consensus 727 L~~a~~lf~~~glr~LpVVd~~~~~g~vvGIITr 760 (794)
..+ .+........||.|. +|+++|+|+.
T Consensus 136 ~~~---~~~~~~c~aaPI~d~---~G~liGvl~l 163 (638)
T PRK11388 136 FKQ---ALHNWAFCATPVFDS---KGRLTGTIAL 163 (638)
T ss_pred HHH---hccCceEEeeEEEcC---CCCEEEEEEE
Confidence 443 344566778999997 7999999973
No 246
>PF10754 DUF2569: Protein of unknown function (DUF2569); InterPro: IPR019690 This entry represents a protein that is conserved in bacteria. The function is not known, but several members are annotated as being YdgK or a homologue thereof and associated to the inner membrane. This signature also matches proteins that are described as transglutaminase-like enzymes, although this could not be confirmed.
Probab=35.87 E-value=4e+02 Score=25.54 Aligned_cols=25 Identities=24% Similarity=0.227 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 003801 95 MKWSLCFLIGLIVGLIGFLNNLAVE 119 (794)
Q Consensus 95 ~~w~~~~liGv~~Gl~a~~~~~~i~ 119 (794)
.-|++..++|++.+.+........+
T Consensus 8 GGWL~lp~iglils~l~~~~~l~~~ 32 (149)
T PF10754_consen 8 GGWLILPAIGLILSPLSTSLMLYLY 32 (149)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999998888776554
No 247
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=33.04 E-value=46 Score=38.31 Aligned_cols=51 Identities=18% Similarity=0.208 Sum_probs=44.2
Q ss_pred CCHHHHHHHHHHcCCCEEEEeecCCCCCcEEEEEecccccHHHHHhcCccccccc
Q 003801 725 MSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHDFMPEHILALNPLLARSR 779 (794)
Q Consensus 725 ~sL~~a~~lf~~~glr~LpVVd~~~~~g~vvGIITr~Dll~~~~~~~~~~l~~~~ 779 (794)
..++.+.+...+.|-.-++|++ ++++.|+|-.+|+++.-+++.+.++++..
T Consensus 413 ~~l~~~~~~vs~~GGTPL~V~~----~~~~~GVI~LkDivK~Gi~ERf~elR~Mg 463 (681)
T COG2216 413 EDLDAAVDEVSRLGGTPLVVVE----NGRILGVIYLKDIVKPGIKERFAELRKMG 463 (681)
T ss_pred HHHHHHHHHHHhcCCCceEEEE----CCEEEEEEEehhhcchhHHHHHHHHHhcC
Confidence 3578888889999999999998 58999999999999988888888877654
No 248
>PRK09400 secE preprotein translocase subunit SecE; Reviewed
Probab=30.99 E-value=1.3e+02 Score=24.36 Aligned_cols=31 Identities=26% Similarity=0.427 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 003801 90 IQYIFMKWSLCFLIGLI-VGLIGFLNNLAVEN 120 (794)
Q Consensus 90 ~~~~~~~w~~~~liGv~-~Gl~a~~~~~~i~~ 120 (794)
-+..+.+...+..+|++ +|++++++......
T Consensus 28 d~~Ef~~ia~~~~iG~~i~G~iGf~Ikli~~~ 59 (61)
T PRK09400 28 TREEFLLVAKVTGLGILLIGLIGFIIYLIMTL 59 (61)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34456677777778865 49999988876543
No 249
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=29.94 E-value=2.5e+02 Score=22.69 Aligned_cols=8 Identities=25% Similarity=0.559 Sum_probs=3.6
Q ss_pred cccccchh
Q 003801 69 YEIAENDF 76 (794)
Q Consensus 69 y~~~~~~~ 76 (794)
|++.||+.
T Consensus 3 YSESDnET 10 (60)
T PF06072_consen 3 YSESDNET 10 (60)
T ss_pred cCcccccc
Confidence 44444443
No 250
>PF09835 DUF2062: Uncharacterized protein conserved in bacteria (DUF2062); InterPro: IPR018639 This domain, found in various prokaryotic proteins, has no known function. It is found at the C-terminal of family 2 glycosyltransferase proteins, in addition to proteins of unknown function.
Probab=27.96 E-value=5.4e+02 Score=24.57 Aligned_cols=22 Identities=23% Similarity=0.392 Sum_probs=16.7
Q ss_pred hhhhhHHHHhhhhhhhhhhcccc
Q 003801 249 RDRRDFVTCGSAAGIAAAFRAPV 271 (794)
Q Consensus 249 ~~~r~lv~~GaaAGvaaaF~APi 271 (794)
++.+.-++.|.|.|+...|- |+
T Consensus 16 ~~~p~~iA~g~AiG~fig~~-P~ 37 (154)
T PF09835_consen 16 GGSPHSIALGFAIGVFIGFL-PI 37 (154)
T ss_pred CCCHHHHHHHHHHHHHHHHH-hc
Confidence 45566789999999999864 55
No 251
>TIGR01427 PTS_IIC_fructo PTS system, fructose subfamily, IIC component. This model represents the IIC component, or IIC region of a IIABC or IIBC polypeptide of a phosphotransferase system for carbohydrate transport. Members of this family belong to the fructose-specific subfamily of the broader family (pfam02378) of PTS IIC proteins. Members should be found as part of the same chain or in the same operon as fructose family IIA (TIGR00848) and IIB (TIGR00829) protein regions. A number of bacterial species have members in two different branches of this subfamily, suggesting some diversity in substrate specificity of its members.
Probab=27.86 E-value=8.7e+02 Score=26.94 Aligned_cols=31 Identities=19% Similarity=-0.083 Sum_probs=19.8
Q ss_pred HHhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 003801 280 EMASWWRSALLWRAFFTTAIVAILLRAFIDI 310 (794)
Q Consensus 280 ~~~~~~~~~~~~~~f~~~~va~~v~~~l~~~ 310 (794)
|-+-++-.....|.+.++++++.+...+...
T Consensus 270 EpAI~gv~~~~~r~~~~~~iG~avgG~~~~~ 300 (346)
T TIGR01427 270 EGAIPFAAADPKRVIPACIIGSAVTGAISMA 300 (346)
T ss_pred ccchhhHhcccchHHHHHHHHHHHHHHHHHH
Confidence 4444444455567888888887777666544
No 252
>PRK08319 cobalt transport protein CbiM; Validated
Probab=26.30 E-value=4e+02 Score=27.56 Aligned_cols=16 Identities=19% Similarity=0.303 Sum_probs=10.0
Q ss_pred HHhhhhhhhhhhcccc
Q 003801 256 TCGSAAGIAAAFRAPV 271 (794)
Q Consensus 256 ~~GaaAGvaaaF~APi 271 (794)
.++++.-+.-.+|+|+
T Consensus 47 ~~~a~~f~~~~i~~pi 62 (224)
T PRK08319 47 LAGAFIFVLSALKIPS 62 (224)
T ss_pred HHHHHHHHHHHhcCCC
Confidence 4444444556899995
No 253
>TIGR02921 PEP_integral PEP-CTERM family integral membrane protein. Members of this protein family, found in three different species so far, have a PEP-CTERM sequence at the carboxyl-terminus (see model TIGR02595), but are unusual among PEP-CTERM proteins in having multiple predicted transmembrane segments. The function is unknown. It is proposed that a member of the EpsH family, to be designated exosortase (see TIGR02602), recognizes and cleaves PEP-CTERM proteins in a manner analogous to the cleavage of LPXTG proteins by sortase (see Haft, et al., 2006).
Probab=26.21 E-value=1.2e+03 Score=27.88 Aligned_cols=62 Identities=21% Similarity=0.423 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHhhc---cCccccccchhhhcccCChhhhhhHHHHhh-hhhhhhhhcccchhHHHHHHHH
Q 003801 216 MVHTGACVASLLGQ---GGSKKYGLTWKWLRFFKNDRDRRDFVTCGS-AAGIAAAFRAPVGGLLFAIEEM 281 (794)
Q Consensus 216 ~vhiGa~igs~l~~---~~s~~~~l~~~~l~~f~~~~~~r~lv~~Ga-aAGvaaaF~APigGvLFalE~~ 281 (794)
++.+|-|+++..+- |-..++++...|++. .-...++.-|. +|.+-+-|--|.+.-.|-+.+.
T Consensus 111 li~~~i~i~a~~~~l~~g~~sr~~~glqw~~l----~~~~~ml~~giy~~~~l~~~~ip~~~gff~l~~~ 176 (952)
T TIGR02921 111 LINIGIAIAAFAACLFGGVASRFKIGLQWLQL----LAAMLMLLFGIYAAALLAFFAIPAAAGFFELLEE 176 (952)
T ss_pred HHHHHHHHHHHHHHHhhcchhcccchHHHHHH----HHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHH
Confidence 34567677665542 233356665567664 12233444444 4556667778888777765443
No 254
>PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter. Proteins in this group are endosomal integral membrane proteins.; GO: 0016021 integral to membrane
Probab=24.30 E-value=5.6e+02 Score=30.16 Aligned_cols=20 Identities=20% Similarity=0.303 Sum_probs=14.5
Q ss_pred chHHHHHHHHHHHHHHHHHH
Q 003801 339 ADVPLVLLLGVVGGILGSLY 358 (794)
Q Consensus 339 ~~l~~~illGv~~Gl~g~~f 358 (794)
.-+..+++.|+++|-.++-+
T Consensus 301 ~~i~~y~~~~~iaGy~S~~~ 320 (521)
T PF02990_consen 301 AAIILYALTSFIAGYVSARL 320 (521)
T ss_pred HHHHHHHHHhhHHHHHHHHH
Confidence 44677788888888877643
No 255
>PF04550 Phage_holin_2: Phage holin family 2 ; InterPro: IPR007633 This entry represents the Bacteriophage P2, GpY, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=23.19 E-value=3.8e+02 Score=23.48 Aligned_cols=50 Identities=26% Similarity=0.364 Sum_probs=26.3
Q ss_pred HHhhcCCCCcccchHHHHHHHHHhHHHHHHhccccCcchHHHHHHHHhhhhh
Q 003801 478 VLSYGIVAPAGLFVPAIVTGASYGRFVGMLVGSHSNLNHGLYAVLGAASFLG 529 (794)
Q Consensus 478 ~~t~g~g~~gG~f~Psl~iGa~~G~l~g~~~~~~~~~~~~~~alvGaaa~l~ 529 (794)
.++-+-.++-=+|+==..+|+.....-|..+-.++.++| .|++|.+|.++
T Consensus 23 ~L~s~Epit~RL~iGR~ilGs~~S~~Aga~Li~~Pdl~p--lAv~GlgsalG 72 (89)
T PF04550_consen 23 VLASNEPITLRLFIGRVILGSAVSVVAGAALIQFPDLPP--LAVIGLGSALG 72 (89)
T ss_pred HHccCCCCchhHHhHHHHHhhHHHHHHHHHHhcCCCCCH--HHHHHHHHHHH
Confidence 334333343344444444555555555555543444444 67778777775
No 256
>KOG4267 consensus Predicted membrane protein [Function unknown]
Probab=22.04 E-value=1.1e+02 Score=27.79 Aligned_cols=43 Identities=23% Similarity=0.333 Sum_probs=28.2
Q ss_pred hHHHHHHHHHhHHHHHHhccc-cCcc-hHHHHHHHHhhhhhhhcc
Q 003801 491 VPAIVTGASYGRFVGMLVGSH-SNLN-HGLYAVLGAASFLGGSMR 533 (794)
Q Consensus 491 ~Psl~iGa~~G~l~g~~~~~~-~~~~-~~~~alvGaaa~l~g~~r 533 (794)
+|||..|..+|.++|..-... ..-+ -..+++.|.+++|+|++.
T Consensus 28 i~SL~aGl~~G~l~g~~s~~l~~~~~~~~~~~l~~~s~~L~gvmg 72 (110)
T KOG4267|consen 28 IPSLAAGLLFGALAGYGSYLLSRDKKGGSLVALGGTSAALLGVMG 72 (110)
T ss_pred cchHHHHHHHHHHHHHHHHHhhcCCCcCchhHHHHHHHHHHHHHh
Confidence 599999999998888654331 1112 234566666777777664
No 257
>TIGR00327 secE_euk_arch protein translocase SEC61 complex gamma subunit, archaeal and eukaryotic. This model describes archaeal SEC61-like and eukaryotic SEC61 but not bacterial secE proteins, for which a Pfam pfam00584 (SecE) has been created.
Probab=20.71 E-value=2.7e+02 Score=22.64 Aligned_cols=31 Identities=29% Similarity=0.464 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q 003801 91 QYIFMKWSLCFLIGLI-VGLIGFLNNLAVENI 121 (794)
Q Consensus 91 ~~~~~~w~~~~liGv~-~Gl~a~~~~~~i~~~ 121 (794)
+.++.+...+..+|++ +|++++++......+
T Consensus 25 ~~Ef~~iak~t~iG~~i~G~IGf~Ikli~~pi 56 (61)
T TIGR00327 25 LEEYLKVAKVTGIGIIIVGIIGYIIKIIAIPI 56 (61)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455667777777765 499998887665444
Done!