Query 003801
Match_columns 794
No_of_seqs 506 out of 2670
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 04:29:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003801.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003801hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3org_A CMCLC; transporter, tra 100.0 1.1E-89 3.7E-94 810.9 43.9 604 91-769 5-625 (632)
2 3nd0_A SLL0855 protein; CLC fa 100.0 3.6E-70 1.2E-74 618.1 39.5 435 67-580 3-443 (466)
3 1ots_A Voltage-gated CLC-type 100.0 1.2E-68 4E-73 607.9 41.3 413 95-581 34-452 (465)
4 4ene_A CLC-EC1, H(+)/CL(-) exc 100.0 1.5E-67 5.1E-72 595.3 46.2 408 97-580 21-436 (446)
5 2d4z_A Chloride channel protei 99.9 4.3E-21 1.5E-25 200.0 15.8 177 584-768 1-245 (250)
6 4esy_A CBS domain containing m 99.7 1.4E-18 4.7E-23 170.5 8.1 150 593-770 14-163 (170)
7 3lv9_A Putative transporter; C 99.7 4.8E-17 1.6E-21 155.5 13.6 126 593-770 19-146 (148)
8 3lhh_A CBS domain protein; str 99.7 9.6E-17 3.3E-21 157.8 13.5 129 593-773 38-168 (172)
9 2ef7_A Hypothetical protein ST 99.7 1.6E-16 5.5E-21 148.6 13.9 127 594-771 1-127 (133)
10 3i8n_A Uncharacterized protein 99.7 6.3E-17 2.2E-21 151.2 10.9 125 594-769 3-129 (130)
11 3kpb_A Uncharacterized protein 99.7 8.8E-17 3E-21 147.9 11.2 120 597-769 1-120 (122)
12 3hf7_A Uncharacterized CBS-dom 99.7 4.5E-17 1.5E-21 152.4 9.3 126 596-770 1-128 (130)
13 3lfr_A Putative metal ION tran 99.7 3.1E-17 1E-21 154.8 8.1 128 596-773 2-131 (136)
14 3jtf_A Magnesium and cobalt ef 99.7 5.9E-17 2E-21 151.3 9.7 123 595-770 3-127 (129)
15 3oco_A Hemolysin-like protein 99.7 6.5E-17 2.2E-21 155.6 9.6 129 594-774 17-148 (153)
16 3nqr_A Magnesium and cobalt ef 99.7 4E-17 1.4E-21 151.9 7.6 122 596-768 2-125 (127)
17 2rih_A Conserved protein with 99.7 3E-16 1E-20 148.5 13.3 123 596-769 4-128 (141)
18 2p9m_A Hypothetical protein MJ 99.7 1.7E-16 5.7E-21 149.4 10.9 128 592-769 3-136 (138)
19 3gby_A Uncharacterized protein 99.7 1.2E-16 3.9E-21 148.9 9.5 124 595-769 3-126 (128)
20 2yzi_A Hypothetical protein PH 99.7 3.1E-16 1.1E-20 147.6 12.3 128 594-772 4-132 (138)
21 3k6e_A CBS domain protein; str 99.7 2.4E-16 8.3E-21 152.6 11.5 128 598-772 16-145 (156)
22 3k2v_A Putative D-arabinose 5- 99.7 1.9E-16 6.6E-21 151.5 10.5 119 597-765 28-148 (149)
23 3fv6_A YQZB protein; CBS domai 99.7 5.1E-16 1.8E-20 150.3 13.5 132 592-773 12-148 (159)
24 3fhm_A Uncharacterized protein 99.6 4.5E-16 1.5E-20 151.7 11.5 135 588-771 15-152 (165)
25 4gqw_A CBS domain-containing p 99.6 2.1E-16 7.2E-21 150.9 8.6 140 595-770 3-144 (152)
26 1pbj_A Hypothetical protein; s 99.6 7.5E-16 2.6E-20 142.2 11.6 122 597-769 1-122 (125)
27 3oi8_A Uncharacterized protein 99.6 2E-16 6.9E-21 152.8 7.8 120 594-765 35-156 (156)
28 3lqn_A CBS domain protein; csg 99.6 6.2E-16 2.1E-20 147.9 10.7 136 591-772 9-146 (150)
29 1o50_A CBS domain-containing p 99.6 1.1E-15 3.8E-20 147.5 12.5 142 592-771 11-155 (157)
30 3ocm_A Putative membrane prote 99.6 9.9E-16 3.4E-20 150.9 11.9 128 594-774 33-162 (173)
31 3sl7_A CBS domain-containing p 99.6 4.6E-16 1.6E-20 153.2 8.6 154 596-771 3-158 (180)
32 3kxr_A Magnesium transporter, 99.6 2.2E-15 7.6E-20 152.6 13.5 130 594-778 51-183 (205)
33 2o16_A Acetoin utilization pro 99.6 1.4E-15 4.8E-20 147.5 10.8 133 595-769 3-135 (160)
34 1y5h_A Hypothetical protein RV 99.6 6.3E-16 2.1E-20 144.6 7.8 125 594-768 5-130 (133)
35 2uv4_A 5'-AMP-activated protei 99.6 2.4E-15 8.1E-20 144.4 11.7 128 591-768 17-150 (152)
36 3ctu_A CBS domain protein; str 99.6 2.7E-15 9.3E-20 144.5 12.1 132 594-772 12-145 (156)
37 2nyc_A Nuclear protein SNF4; b 99.6 2.4E-15 8.2E-20 142.2 11.5 128 594-769 5-141 (144)
38 2rc3_A CBS domain; in SITU pro 99.6 2.3E-15 7.9E-20 141.2 11.2 123 598-770 7-132 (135)
39 2emq_A Hypothetical conserved 99.6 2.5E-15 8.7E-20 144.6 11.2 134 593-772 7-142 (157)
40 2j9l_A Chloride channel protei 99.6 3.1E-15 1.1E-19 148.0 11.9 156 592-773 6-169 (185)
41 2pfi_A Chloride channel protei 99.6 3.9E-15 1.3E-19 144.2 12.2 132 594-771 10-149 (164)
42 1pvm_A Conserved hypothetical 99.6 4.9E-15 1.7E-19 147.1 12.4 126 596-769 8-133 (184)
43 1yav_A Hypothetical protein BS 99.6 2.3E-15 8E-20 145.5 9.0 135 593-773 10-146 (159)
44 4fry_A Putative signal-transdu 99.6 5.6E-15 1.9E-19 142.4 11.2 127 597-773 7-139 (157)
45 3l2b_A Probable manganase-depe 99.6 2.1E-14 7E-19 149.3 15.4 165 596-768 6-243 (245)
46 3pc3_A CG1753, isoform A; CBS, 99.5 2E-14 6.8E-19 166.2 12.6 155 569-771 356-513 (527)
47 1vr9_A CBS domain protein/ACT 99.5 2.2E-14 7.6E-19 146.0 10.5 119 596-769 12-130 (213)
48 2oux_A Magnesium transporter; 99.5 1.7E-14 5.9E-19 153.7 9.0 129 595-778 135-268 (286)
49 3ddj_A CBS domain-containing p 99.5 3.1E-14 1.1E-18 151.8 10.2 135 596-773 155-289 (296)
50 2yvy_A MGTE, Mg2+ transporter 99.5 5.1E-14 1.7E-18 149.4 11.3 129 595-778 133-266 (278)
51 3t4n_C Nuclear protein SNF4; C 99.5 1.4E-13 4.9E-18 148.6 11.8 127 596-770 186-321 (323)
52 2yzq_A Putative uncharacterize 99.4 1.5E-13 5E-18 145.3 10.4 153 596-768 125-278 (282)
53 3kh5_A Protein MJ1225; AMPK, A 99.4 1.2E-13 4.2E-18 145.4 9.2 133 596-767 147-279 (280)
54 3ddj_A CBS domain-containing p 99.4 1.6E-13 5.3E-18 146.4 9.8 122 596-768 92-213 (296)
55 3kh5_A Protein MJ1225; AMPK, A 99.4 3.5E-13 1.2E-17 141.9 12.1 122 596-768 83-204 (280)
56 2zy9_A Mg2+ transporter MGTE; 99.4 4.9E-13 1.7E-17 152.2 11.0 122 595-771 153-279 (473)
57 2yzq_A Putative uncharacterize 99.4 2.1E-13 7.2E-18 144.0 6.9 117 597-768 1-118 (282)
58 2qrd_G Protein C1556.08C; AMPK 99.4 7.8E-13 2.7E-17 143.5 10.4 128 596-771 181-317 (334)
59 4fxs_A Inosine-5'-monophosphat 99.3 8E-13 2.7E-17 150.8 6.6 116 597-766 89-206 (496)
60 3usb_A Inosine-5'-monophosphat 99.3 2.8E-12 9.6E-17 146.8 9.9 118 597-768 113-233 (511)
61 2v8q_E 5'-AMP-activated protei 99.3 3.8E-12 1.3E-16 137.9 9.3 132 597-770 190-324 (330)
62 3t4n_C Nuclear protein SNF4; C 99.3 9.3E-12 3.2E-16 134.3 11.8 132 597-769 114-248 (323)
63 1zfj_A Inosine monophosphate d 99.3 1.1E-11 3.9E-16 141.9 10.9 117 598-768 91-210 (491)
64 2v8q_E 5'-AMP-activated protei 99.3 1.9E-11 6.4E-16 132.4 12.0 130 598-770 119-252 (330)
65 4avf_A Inosine-5'-monophosphat 99.2 1.1E-12 3.8E-17 149.5 0.5 116 597-767 88-205 (490)
66 4af0_A Inosine-5'-monophosphat 99.2 1.7E-12 5.7E-17 144.7 0.8 123 599-776 140-262 (556)
67 1vrd_A Inosine-5'-monophosphat 99.2 1.6E-12 5.5E-17 149.0 0.2 171 539-768 36-214 (494)
68 1me8_A Inosine-5'-monophosphat 99.2 2.6E-12 8.9E-17 147.2 -0.9 126 594-769 93-221 (503)
69 1ots_A Voltage-gated CLC-type 99.1 7.8E-10 2.7E-14 125.2 18.6 185 98-305 253-437 (465)
70 4ene_A CLC-EC1, H(+)/CL(-) exc 99.1 5.4E-10 1.8E-14 125.8 17.1 185 99-306 239-423 (446)
71 2qrd_G Protein C1556.08C; AMPK 99.1 1.6E-10 5.4E-15 125.2 12.1 129 600-769 110-243 (334)
72 1jcn_A Inosine monophosphate d 99.1 2.5E-12 8.6E-17 148.0 -2.8 176 538-767 48-231 (514)
73 3nd0_A SLL0855 protein; CLC fa 99.1 1.4E-09 4.6E-14 123.0 16.2 180 99-304 249-428 (466)
74 2cu0_A Inosine-5'-monophosphat 99.0 4.3E-11 1.5E-15 136.7 -0.1 168 538-767 33-206 (486)
75 3org_A CMCLC; transporter, tra 98.7 7.9E-08 2.7E-12 113.1 16.3 191 335-569 5-211 (632)
76 3ghd_A A cystathionine beta-sy 98.5 1.6E-07 5.3E-12 77.5 7.3 46 607-658 2-47 (70)
77 4esy_A CBS domain containing m 98.4 4.4E-07 1.5E-11 88.2 7.0 57 707-766 17-73 (170)
78 1vr9_A CBS domain protein/ACT 98.3 7.2E-07 2.4E-11 90.3 7.7 102 596-747 71-172 (213)
79 3fio_A A cystathionine beta-sy 98.2 2.1E-06 7.3E-11 70.0 7.3 48 606-659 1-48 (70)
80 3ghd_A A cystathionine beta-sy 98.2 1.5E-06 5E-11 71.6 6.0 47 718-768 2-48 (70)
81 3lv9_A Putative transporter; C 98.1 2.7E-06 9.1E-11 80.3 5.9 60 708-770 23-85 (148)
82 2rih_A Conserved protein with 98.1 3.1E-06 1.1E-10 79.1 5.9 60 707-769 4-65 (141)
83 3l2b_A Probable manganase-depe 98.1 2.9E-06 1E-10 87.4 6.0 61 707-770 6-66 (245)
84 2d4z_A Chloride channel protei 98.1 4E-06 1.4E-10 86.9 6.7 63 707-770 12-74 (250)
85 2yzi_A Hypothetical protein PH 98.0 3.9E-06 1.3E-10 78.0 5.8 56 708-766 7-62 (138)
86 2o16_A Acetoin utilization pro 98.0 4.4E-06 1.5E-10 80.1 5.8 60 707-769 4-63 (160)
87 3fio_A A cystathionine beta-sy 98.0 7.3E-06 2.5E-10 66.7 6.0 48 718-769 2-49 (70)
88 3k6e_A CBS domain protein; str 98.0 5.9E-06 2E-10 79.2 6.1 60 709-771 16-77 (156)
89 3jtf_A Magnesium and cobalt ef 98.0 6.2E-06 2.1E-10 75.9 5.8 58 708-768 5-65 (129)
90 3ctu_A CBS domain protein; str 98.0 6.8E-06 2.3E-10 78.2 6.2 60 708-770 15-76 (156)
91 3nqr_A Magnesium and cobalt ef 98.0 5.8E-06 2E-10 75.9 5.5 57 709-768 4-63 (127)
92 3k2v_A Putative D-arabinose 5- 98.0 7E-06 2.4E-10 77.6 6.0 58 708-768 28-87 (149)
93 3kpb_A Uncharacterized protein 97.9 1.2E-05 4E-10 72.9 6.6 59 597-660 62-120 (122)
94 3lfr_A Putative metal ION tran 97.9 8.7E-06 3E-10 75.7 5.6 57 709-768 4-63 (136)
95 3fv6_A YQZB protein; CBS domai 97.9 1.2E-05 4.1E-10 76.9 6.6 58 707-768 16-73 (159)
96 3gby_A Uncharacterized protein 97.9 9.4E-06 3.2E-10 74.5 5.6 59 597-660 68-126 (128)
97 3fhm_A Uncharacterized protein 97.9 1.4E-05 4.9E-10 76.8 6.4 61 707-770 23-86 (165)
98 2ef7_A Hypothetical protein ST 97.9 1.9E-05 6.5E-10 72.7 6.6 60 596-660 66-125 (133)
99 1pvm_A Conserved hypothetical 97.8 1.7E-05 5.8E-10 77.8 6.4 58 708-768 9-66 (184)
100 3oi8_A Uncharacterized protein 97.8 2E-05 6.7E-10 75.2 6.6 58 707-767 37-97 (156)
101 3sl7_A CBS domain-containing p 97.8 1.8E-05 6.3E-10 76.8 6.5 60 596-660 97-156 (180)
102 4gqw_A CBS domain-containing p 97.8 1.8E-05 6.2E-10 74.3 6.3 60 596-660 84-143 (152)
103 3kxr_A Magnesium transporter, 97.8 2.7E-05 9.1E-10 78.2 7.7 61 596-661 115-175 (205)
104 2rc3_A CBS domain; in SITU pro 97.8 2.3E-05 8E-10 72.4 6.6 60 595-660 72-131 (135)
105 2p9m_A Hypothetical protein MJ 97.8 2.6E-05 8.8E-10 72.2 6.8 60 596-660 72-136 (138)
106 2j9l_A Chloride channel protei 97.8 1.2E-05 4E-10 78.6 4.6 60 707-769 10-77 (185)
107 1pbj_A Hypothetical protein; s 97.8 2.1E-05 7.3E-10 71.4 6.0 60 595-660 63-122 (125)
108 1yav_A Hypothetical protein BS 97.8 1.3E-05 4.3E-10 76.6 4.4 58 708-768 14-73 (159)
109 3oco_A Hemolysin-like protein 97.8 3.4E-05 1.2E-09 73.1 7.4 59 596-660 85-143 (153)
110 2emq_A Hypothetical conserved 97.8 1.7E-05 6E-10 75.2 5.2 58 707-767 10-69 (157)
111 3lhh_A CBS domain protein; str 97.8 3.8E-05 1.3E-09 74.5 7.3 59 596-660 106-164 (172)
112 1o50_A CBS domain-containing p 97.8 2.4E-05 8.1E-10 74.6 5.7 60 595-660 94-153 (157)
113 3hf7_A Uncharacterized CBS-dom 97.8 2.7E-05 9.2E-10 71.8 5.9 58 596-659 69-126 (130)
114 3lqn_A CBS domain protein; csg 97.8 4.6E-05 1.6E-09 71.7 7.7 59 595-660 85-143 (150)
115 3i8n_A Uncharacterized protein 97.7 3E-05 1E-09 71.4 5.9 58 596-659 71-128 (130)
116 1y5h_A Hypothetical protein RV 97.7 1.3E-05 4.5E-10 73.8 3.3 55 708-765 8-62 (133)
117 2nyc_A Nuclear protein SNF4; b 97.7 3.6E-05 1.2E-09 71.6 6.2 54 713-769 16-69 (144)
118 2pfi_A Chloride channel protei 97.7 2.4E-05 8.1E-10 74.7 4.7 60 708-768 13-72 (164)
119 4fry_A Putative signal-transdu 97.7 3.8E-05 1.3E-09 73.0 6.0 60 595-660 76-135 (157)
120 3ocm_A Putative membrane prote 97.7 4E-05 1.4E-09 74.7 6.2 60 708-770 36-98 (173)
121 2uv4_A 5'-AMP-activated protei 97.7 5.2E-05 1.8E-09 71.8 6.4 58 597-659 87-150 (152)
122 3pc3_A CG1753, isoform A; CBS, 97.5 7.9E-05 2.7E-09 85.7 5.8 60 708-770 384-445 (527)
123 2yvy_A MGTE, Mg2+ transporter 97.4 0.00012 4.1E-09 76.9 6.3 60 596-660 198-257 (278)
124 2oux_A Magnesium transporter; 97.4 0.00014 4.9E-09 76.8 6.4 60 596-660 200-259 (286)
125 2zy9_A Mg2+ transporter MGTE; 97.3 0.00029 9.8E-09 79.9 7.2 61 595-660 217-277 (473)
126 1me8_A Inosine-5'-monophosphat 97.2 6.1E-05 2.1E-09 86.0 1.3 60 595-659 159-220 (503)
127 3usb_A Inosine-5'-monophosphat 97.2 0.00093 3.2E-08 76.3 10.3 61 595-660 173-234 (511)
128 4fxs_A Inosine-5'-monophosphat 96.8 0.00069 2.4E-08 77.0 4.1 54 708-764 89-142 (496)
129 1zfj_A Inosine monophosphate d 96.6 0.0026 9E-08 72.3 7.3 60 596-660 151-211 (491)
130 1vrd_A Inosine-5'-monophosphat 96.4 0.00052 1.8E-08 78.2 0.2 56 707-765 94-149 (494)
131 4af0_A Inosine-5'-monophosphat 96.3 0.00059 2E-08 76.5 0.0 57 596-657 199-255 (556)
132 2cu0_A Inosine-5'-monophosphat 96.2 0.0022 7.4E-08 72.9 3.7 58 596-658 149-206 (486)
133 4avf_A Inosine-5'-monophosphat 96.0 0.0011 3.9E-08 75.1 0.0 61 595-660 145-207 (490)
134 1jcn_A Inosine monophosphate d 95.8 0.0019 6.4E-08 74.0 0.8 58 709-766 109-166 (514)
135 2pq4_B Periplasmic nitrate red 36.1 17 0.00059 25.0 1.8 24 250-273 4-27 (35)
136 1rh5_B Preprotein translocase 32.7 95 0.0032 25.1 6.0 33 90-122 30-63 (74)
137 2ww9_B Protein transport prote 32.5 92 0.0031 25.6 5.9 44 75-118 26-72 (80)
138 2l2t_A Receptor tyrosine-prote 26.4 59 0.002 23.5 3.3 23 343-365 10-32 (44)
No 1
>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}
Probab=100.00 E-value=1.1e-89 Score=810.91 Aligned_cols=604 Identities=24% Similarity=0.370 Sum_probs=455.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHhhcccccCC
Q 003801 91 QYIFMKWSLCFLIGLIVGLIGFLNNLAVENIAGTKFVVTSNMMLANKFGMAFLSFSIPNLVLTLFASIVTATVAPVAAGS 170 (794)
Q Consensus 91 ~~~~~~w~~~~liGv~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~p~a~Gs 170 (794)
.|.++.+++++++|+++|+++++++.+++++++++...... ... ...|+.|+.+++++++++++++.+++|.++||
T Consensus 5 ~~~~r~~~~~~lvGi~~gl~~~~~~~~i~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~Gs 80 (632)
T 3org_A 5 MYLLRLVCFLTLLGVTAALFIFAVDLAVHGLEELRMKISRL-AGR---FAGYILYVVSGVALCLLSTFWCAVLSTEAEGS 80 (632)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SCH---HHHHHHHHHHHHHHHHHHHHHHHHSCGGGCBC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhh---hHHHHHHHHHHHHHHHHHHHHHHhcCCccCCC
Confidence 34444445889999999999999999999999876543321 111 44677788889999999999999999999999
Q ss_pred CHHHHHHHHcCCC--CCCcchhHHHHHHHHHHHhhhccccccCCchhHHHHHHHHHHHhhccCccccccchhhhc-ccCC
Q 003801 171 GIPEVKAYLNGVD--APGILSFRTLVIKIIGSISAVSSSLLVGKAGPMVHTGACVASLLGQGGSKKYGLTWKWLR-FFKN 247 (794)
Q Consensus 171 Gipev~~~lng~~--~~~~~~~~tl~~K~~~~~~sv~sGlsvG~EGP~vhiGa~igs~l~~~~s~~~~l~~~~l~-~f~~ 247 (794)
||||||++++|.. .++.+++|++++|++++++++++|+|+|||||+||+||++|+.+++. ++++ +++|
T Consensus 81 GIp~v~~~l~g~~~~~~~~~~~~~~~~K~~~~~l~igsG~s~GrEGP~vqiGa~ig~~~~~~---------~~f~~~~~~ 151 (632)
T 3org_A 81 GLPQMKSILSGFYDKMRSALELRVLFAKALGLICAIGGGLPVGWEGPNVHIACIIAHQFYRL---------GVFKELCTD 151 (632)
T ss_dssp SHHHHHHHTTTTHHHHGGGGSHHHHHHHHHHHHHHHHTTCSCBSHHHHHHHHHHHHHHHTTS---------HHHHHHHHS
T ss_pred CHHHHHHHHhCccccccccccHHHHHHHHHHHHHHHhcCCCccccchHHHHHHHHHHHHhhh---------hhhccccCC
Confidence 9999999999976 67889999999999999999999999999999999999999987751 0222 2347
Q ss_pred hhhhhhHHHHhhhhhhhhhhcccchhHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcCcccccCCCceeEE
Q 003801 248 DRDRRDFVTCGSAAGIAAAFRAPVGGLLFAIEEMASWWRSALLWRAFFTTAIVAILLRAFIDICKSGKCGLFGTGGLIMY 327 (794)
Q Consensus 248 ~~~~r~lv~~GaaAGvaaaF~APigGvLFalE~~~~~~~~~~~~~~f~~~~va~~v~~~l~~~~~~~~~~~fg~~~~~~f 327 (794)
+++||++++||+|||+||+|||||||++|++||++++|+.+.+|+++++|++++++.+.+... ......|+. .|
T Consensus 152 ~~~~r~ll~aGaaAG~aaaF~aPlaGvlFalE~~~~~~~~~~~~~~~~as~~a~~v~~~~~~~--~~~~~~~~~----~~ 225 (632)
T 3org_A 152 RALRLQTLAAACAVGLASSFGAPLGGVLYSIETIASFYLVQAFWKGVLSALSGAIVYELLYTT--PLVEAFEGT----NF 225 (632)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHTCSEEETTHHHHHHHHHHHHHHHTTC---------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhCCccHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhccC--ccccccccc----cc
Confidence 889999999999999999999999999999999999999999999999999999887754210 000011211 12
Q ss_pred eeccCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHhchhhhccCCCC
Q 003801 328 DVYSADASYHLADVPLVLLLGVVGGILGSLYNFLLDKVLRIYNFINEKGIAPKIFLACTISILTSCLLFGLPWLASCRPC 407 (794)
Q Consensus 328 ~v~~~~~~~~~~~l~~~illGv~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~c~~~ 407 (794)
++ ..+++..++ +++++|++||++|.+|+++++++.+++ +++..+.+|++++++++++++++. +|..
T Consensus 226 ~~---~~~~~~~~l-~~~~lGi~~Gl~g~~f~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~--~p~~------ 291 (632)
T 3org_A 226 DA---SDVSRTQTL-LYAILGALMGVLGALFIRCVRSIYELR--MRHYPGTNRYFLVGVVALFASALQ--YPFR------ 291 (632)
T ss_dssp ------CCCCSCTH-HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHSSTTCCTHHHHHHHHHHHHHHT--TTC-------
T ss_pred cc---cCCCcHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhcchhHHHHHHHHHHHHHHHH--HHHH------
Confidence 22 235778899 999999999999999999999887762 222224457788888887766532 2321
Q ss_pred CCCCCCcCCCCCCCCcccccccCCCccchhhhhhcCCcHHHHHhhhccCCC---CchhhHHHHHHHHHHHHHHHHhhcCC
Q 003801 408 PSDASEACPTIGRSGNYKKFQCAPGYYNDLASLIFNTNDDAIRNLFSKDTD---KEFQHSSMLIFFVTCFSLSVLSYGIV 484 (794)
Q Consensus 408 ~~~~~~~~p~~g~~g~~~~~~c~~g~y~~la~l~~~~~~~~i~~lf~~~~~---~~~~~~~l~~~~~~k~~~t~~t~g~g 484 (794)
.|. .++++.++.+|++.+. +++.+..|++++++|+++|++|+|+|
T Consensus 292 ----------~g~----------------------~~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~k~~~t~~s~g~g 339 (632)
T 3org_A 292 ----------LFA----------------------LDPRATINDLFKAVPLYQTDHFGWTELILMPIIKFILVALSIGLP 339 (632)
T ss_dssp -------------------------------------CHHHHHHHHSCC----------CCSSHHHHHHHHHHHHHTTSS
T ss_pred ----------hcC----------------------CcHHHHHHHHHcCCccccccchhHHHHHHHHHHHHHHHHHHHhCC
Confidence 110 1234556666654221 12334467788899999999999999
Q ss_pred CCcccchHHHHHHHHHhHHHHHHhccc--cCcchHHHHHHHHhhhhhhhcchhhHHHHHHHHHhCCcchHHHHHHHHHHH
Q 003801 485 APAGLFVPAIVTGASYGRFVGMLVGSH--SNLNHGLYAVLGAASFLGGSMRMTVSLCVIILELTNNLLLLPMIMLVLLIS 562 (794)
Q Consensus 485 ~~gG~f~Psl~iGa~~G~l~g~~~~~~--~~~~~~~~alvGaaa~l~g~~r~pls~~vi~~ElTg~~~~l~pimia~~ia 562 (794)
+|||+|+|++++||++|+++|.+++.. ...+|+.||++||||+++|++|+|+++ +|++||||++++++|+|+++++|
T Consensus 340 ~pGGif~P~l~iGA~~G~~~g~~~~~~~p~~~~p~~~a~vGmaa~~~~v~~ap~t~-vi~~E~tg~~~~~lpl~ia~~~a 418 (632)
T 3org_A 340 LPAGVFVPSFLIGAGFGRLYGELMRVVFGNAIVPGSYAVVGAAAFTAGVTRALSCA-VIIFEVTGQIRHLVPVLISVLLA 418 (632)
T ss_dssp SBCBCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHSCCTTHH-HHHHHHTCCCSCSHHHHHHHHHH
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCChhHHHHHHHHHHHH
Confidence 999999999999999999999987642 237899999999999999999998886 58999999999999999999999
Q ss_pred HHHHhhhcchHHHHHHHHcCCCccccccccccccceeccccc--cceeEEeccccHHHHHHHHh-cCCCCeeEEeeCCCC
Q 003801 563 KTVADAFNGNIYDLIMKAKGFPYLETHVEPYMRQLTVGDVVT--APLQLFHGIEKAGNVVHVLR-TTRHNGFPVIDENPL 639 (794)
Q Consensus 563 ~~v~~~~~~~iy~~~l~~~g~p~l~~~~~~~l~~l~v~diM~--~~vv~l~~~~sv~~a~~~L~-~~~~~~fPVVd~~~~ 639 (794)
|++++.+++++|+.+++.|++|++++..++..++++|+|+|+ +++++++++++++|+.+.|+ +++|+++||+|++
T Consensus 419 ~~v~~~~~~~iY~~~~~~k~lp~l~~~~~~~~~~~~V~diM~p~~~v~~v~~~~t~~e~~~~~~~~~~~~~~PVvd~~-- 496 (632)
T 3org_A 419 VIVGNAFNRSLYETLVLMKHLPYMPILRRDRSPEMTAREIMHPIEGEPHLFPDSEPQHIKGILEKFPNRLVFPVIDAN-- 496 (632)
T ss_dssp HHHHHHHCCCHHHHHHHHTTCCEEEEECTTCCTTSBHHHHCBCTTTSCCBCSSSCHHHHHHHHHHSTTCCEECBBCTT--
T ss_pred HHHHHHhCCCHHHHHHHhcCCCccccccccccccCcHHHHhhcCCCceEecCCCcHHHHHHHHHhcCCcceEEEEecC--
Confidence 999999988999999999999999877666678999999999 89999999999999999999 8999999999986
Q ss_pred CCCCeEEEEEeHHHHHHHHHhccCCCCCCCCCCcccccchhhhhhccCCCCCCCcc-ccccchhh-----hhcccccccc
Q 003801 640 SETPILYGLILRAHLITLLKKKAFLPTPNPTVNDAFSQFSAVDFAKRGSGNGDKIE-DIELSEEE-----MEMYVDLHPF 713 (794)
Q Consensus 640 ~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~-di~~~~~~-----~~~~idl~~i 713 (794)
++++|+|+++|+.+.+.++...........+....+..+++.+.......+.. .......+ .+...+++++
T Consensus 497 ---~~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~v~~i 573 (632)
T 3org_A 497 ---GYLLGAISRKEIVDRLQHVLEDVPEPIAGHRTLVLLDAADLSENIEGLVDETPSGEHSSKGKRTATVLEPTSSLVVP 573 (632)
T ss_dssp ---CBBCCEESHHHHTTTTTTC-------------------------------------------------------CCS
T ss_pred ---CeEEEEEEHHHHHHHHHHHhhhcccccccccceeccCHHHHHhhcccCCCCCcccchhhhcccceEeeccccccchh
Confidence 89999999999987665431100000000000111111222211110000000 00000000 0111237899
Q ss_pred cccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCcEEEEEecccccHHHHH
Q 003801 714 ANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHDFMPEHIL 769 (794)
Q Consensus 714 m~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~vvGIITr~Dll~~~~~ 769 (794)
|+++|++|++++++.++.++|++++.+++||+ | +|+++||||++|+++.+.+
T Consensus 574 Mt~~pitV~~~~~l~ea~~~M~~~~i~~lpVv-e---~G~lvGIVT~~Dll~~~~~ 625 (632)
T 3org_A 574 CDVSPIVVTSYSLVRQLHFLFVMLMPSMIYVT-E---RGKLVGIVEREDVAYGYSN 625 (632)
T ss_dssp CCCCCCEEETTCBHHHHHHHHHHTCCSEEEEE-E---TTEEEEEEEGGGTEECCCC
T ss_pred hcCCCceecCCCcHHHHHHHHHhcCCCEEEEE-E---CCEEEEEEehhhHHHHHhh
Confidence 99999999999999999999999999999999 4 6899999999999986543
No 2
>3nd0_A SLL0855 protein; CLC family CL-/H+ antiporter, CLC_EC1 homolog, transport protein; 3.20A {Synechocystis} PDB: 3q17_A
Probab=100.00 E-value=3.6e-70 Score=618.08 Aligned_cols=435 Identities=20% Similarity=0.345 Sum_probs=346.4
Q ss_pred CCcccccchhhHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhhcchhhHHHHH
Q 003801 67 LDYEIAENDFFKEDWRTRGRNQMIQYIFMKWSLCFLIGLIVGLIGFLNNLAVENIAGTKFVVTSNMMLANKFGMAFLSFS 146 (794)
Q Consensus 67 ldy~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~liGv~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (794)
+|||++++ .+.++.+++.+.+..+..+..+++++++|+++|+++.+|+..+++++++++...... ...++..|+.++
T Consensus 3 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~l~~~liGi~~Gl~~~~f~~~l~~~~~~~~~~~~~~--~~~~~~~~~l~~ 79 (466)
T 3nd0_A 3 ADFETSNR-RWLDKLPRNLTDSARSLHPRTLVAAIVVGLITGVLGAGFKSAVNNMLQWRSQLAQIL--APIPPLAWLVTA 79 (466)
T ss_dssp ------------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--TTSCTHHHHHHH
T ss_pred ccHHHHHH-HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--ccccHHHHHHHH
Confidence 69999944 443332222211111122334669999999999999999999999999998775432 122333355555
Q ss_pred HHHHHHHHHHHHHHHhhcccccCCCHHHHHHHHcCCCCCCcchhHHHHHHHHHHHhhhccccccCCchhHHHHHHHHHHH
Q 003801 147 IPNLVLTLFASIVTATVAPVAAGSGIPEVKAYLNGVDAPGILSFRTLVIKIIGSISAVSSSLLVGKAGPMVHTGACVASL 226 (794)
Q Consensus 147 ~~~~~~~~~a~~l~~~~~p~a~GsGipev~~~lng~~~~~~~~~~tl~~K~~~~~~sv~sGlsvG~EGP~vhiGa~igs~ 226 (794)
..+.++++++++++.+++|.++|||||||+++++|.+ +..++|++++|++++++++++|+|+|||||++|+||++|++
T Consensus 80 ~~~~~~~~l~~~l~~~~~p~a~GsGIp~v~~~l~g~~--~~~~~~~~~~k~~~~~ltig~G~S~GrEGP~vqiGa~ig~~ 157 (466)
T 3nd0_A 80 LISGGMVALSFWLMKRFAPDTSGSGIPQIEGHLEGKL--PLVWQRVLPIKLVGGFLSLGAGMLAGFEGPTIQMGGSIGQM 157 (466)
T ss_dssp HHHHHHHHHHHHHHTTTCGGGSBCSHHHHHHHTTSSS--CCCHHHHHHHHHHHHHHHHHTTCSCCTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCcCCCCHHHHHHHHcCCC--CCchHHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHH
Confidence 5666677778889989999999999999999999854 45678999999999999999999999999999999999999
Q ss_pred hhccCccccccchhhhcccCChhhhhhHHHHhhhhhhhhhhcccchhHHHHHHHHhhhhh--hhHHHHHHHHHHHHHHHH
Q 003801 227 LGQGGSKKYGLTWKWLRFFKNDRDRRDFVTCGSAAGIAAAFRAPVGGLLFAIEEMASWWR--SALLWRAFFTTAIVAILL 304 (794)
Q Consensus 227 l~~~~s~~~~l~~~~l~~f~~~~~~r~lv~~GaaAGvaaaF~APigGvLFalE~~~~~~~--~~~~~~~f~~~~va~~v~ 304 (794)
++| .+++ +++|||++++||+|||+||+|||||+|++|++||+.++|+ ...++++++++.+++++.
T Consensus 158 l~~----~~~~---------~~~~~r~ll~aGaAAGlaAaF~APlaGvlFalE~l~~~~~~~~~~~~~~~~as~~a~~v~ 224 (466)
T 3nd0_A 158 TGG----WFKA---------TQENQRILIAVGAGAGLATAFNAPLAGVALIGEEMHPRFRSQTLAYHSLLFGCVMATIIL 224 (466)
T ss_dssp HHH----HTTC---------CHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHSSSCCCCSSCCTTHHHHHHHHHHHHHHH
T ss_pred HHH----HcCC---------ChhHHHHHHHHHHHHHHHHHhCCchHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHH
Confidence 998 3443 6789999999999999999999999999999999998884 355779999998888888
Q ss_pred HHHHHHhhcCcccccCCCceeEEeeccCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHH
Q 003801 305 RAFIDICKSGKCGLFGTGGLIMYDVYSADASYHLADVPLVLLLGVVGGILGSLYNFLLDKVLRIYNFINEKGIAPKIFLA 384 (794)
Q Consensus 305 ~~l~~~~~~~~~~~fg~~~~~~f~v~~~~~~~~~~~l~~~illGv~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (794)
+.+ +|..+ .|+++. ...++..++++++++|+++|++|.+|++++.++.+++++++ +..+++++
T Consensus 225 ~~~-----------~g~~~--~f~~~~-~~~~~~~~l~~~illGi~~Gl~g~lf~~~~~~~~~~~~~~~---~~~~~~~~ 287 (466)
T 3nd0_A 225 RMI-----------RGQSA--IISLTE-FKRVPLDSLWMFIILGILFGVMGYTFNRGLFKVLDWFDRLP---PLATKWKG 287 (466)
T ss_dssp HHH-----------TCSSC--SSCCTT-CCCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC---HHHHHHHH
T ss_pred HHH-----------cCCCC--ceecCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---cccHHHHH
Confidence 764 23333 345543 34567889999999999999999999999999988877643 13366778
Q ss_pred HHHHHHHHHHHhchhhhccCCCCCCCCCCcCCCCCCCCcccccccCCCccchhhhhhcCCcHHHHHhhhccCCCCchhhH
Q 003801 385 CTISILTSCLLFGLPWLASCRPCPSDASEACPTIGRSGNYKKFQCAPGYYNDLASLIFNTNDDAIRNLFSKDTDKEFQHS 464 (794)
Q Consensus 385 ~~~~~~~~~~~~~~p~~~~c~~~~~~~~~~~p~~g~~g~~~~~~c~~g~y~~la~l~~~~~~~~i~~lf~~~~~~~~~~~ 464 (794)
++++++++++.+++|.+ .| ++++.++.++++ ++++.
T Consensus 288 ~l~g~~~g~l~~~~p~~----------------~G------------------------~G~~~i~~~~~~----~~~~~ 323 (466)
T 3nd0_A 288 FLLGSIIGILSLFPLPL----------------TD------------------------GGDNAVLWAFNS----QSHFS 323 (466)
T ss_dssp HHHHHHHHHHTTSSSSC----------------SS------------------------SSHHHHHHHTTS----CCCHH
T ss_pred HHHHHHHHHHHHHHHHH----------------cC------------------------CcHHHHHHHHcC----CccHH
Confidence 88889999988877654 22 234567777753 45677
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCcccchHHHHHHHHHhHHHHHHhccc---cCcchHHHHHHHHhhhhhhhcchhhHHHHH
Q 003801 465 SMLIFFVTCFSLSVLSYGIVAPAGLFVPAIVTGASYGRFVGMLVGSH---SNLNHGLYAVLGAASFLGGSMRMTVSLCVI 541 (794)
Q Consensus 465 ~l~~~~~~k~~~t~~t~g~g~~gG~f~Psl~iGa~~G~l~g~~~~~~---~~~~~~~~alvGaaa~l~g~~r~pls~~vi 541 (794)
.|++++++|+++|++|+|+|+|||+|+|++++||++|+++|.+++.. ...+|+.||++||||+++|++|+|+|+++|
T Consensus 324 ~L~~~~~~K~~~t~lt~gsG~~GGif~Psl~iGA~~G~~~g~~~~~~~p~~~~~~~~~a~vGmaa~~a~v~~aPlt~ivl 403 (466)
T 3nd0_A 324 TLILVFCGRFLLTLICYGSGAIGGIFAPMLGIASIVSVAMARHFHLLFPSQIPEPAVMAIAGMGALVAATVRAPLTAILL 403 (466)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCBCCSHHHHHHHHHHHHHHHHHHHHHHCTTTCSSTHHHHHHTTSHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCceehHHHHHHHHHHHHHHHHHHHhCCccccCHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 88889999999999999999999999999999999999999987642 257899999999999999999999999999
Q ss_pred HHHHhCCcchHHHHHHHHHHHHHHHhhh-cchHHHHHHHH
Q 003801 542 ILELTNNLLLLPMIMLVLLISKTVADAF-NGNIYDLIMKA 580 (794)
Q Consensus 542 ~~ElTg~~~~l~pimia~~ia~~v~~~~-~~~iy~~~l~~ 580 (794)
++|+||++++++|+|+++++|+++++.+ ++++||.++++
T Consensus 404 v~Eltg~~~~~lpl~ia~~iA~~v~~~~~~~~iY~~~l~r 443 (466)
T 3nd0_A 404 TIEMTDNYFVILPLLVTCLVASVVAEALGGKPIYTVLLER 443 (466)
T ss_dssp HHHTTCCCTTHHHHHHHHHHHHHHHTTSCCCCHHHHHHHH
T ss_pred HHHHHCChHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 9999999999999999999999999999 79999999875
No 3
>1ots_A Voltage-gated CLC-type chloride channel ERIC; CLC chloride channel, FAB complex, membrane protein; 2.51A {Escherichia coli} SCOP: f.20.1.1 PDB: 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A 2htl_A 3ejy_A 2ht2_A 2fed_A 2fec_A 1otu_A 3ejz_A 2ht4_A 2htk_A 2ht3_A 1ott_A 2h2s_A 3det_A 2ez0_A 3nmo_A ...
Probab=100.00 E-value=1.2e-68 Score=607.91 Aligned_cols=413 Identities=25% Similarity=0.413 Sum_probs=350.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHhhcccccCCCHHH
Q 003801 95 MKWSLCFLIGLIVGLIGFLNNLAVENIAGTKFVVTSNMMLANKFGMAFLSFSIPNLVLTLFASIVTATVAPVAAGSGIPE 174 (794)
Q Consensus 95 ~~w~~~~liGv~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~p~a~GsGipe 174 (794)
..|++++++|+++|+++.+|+..+++++++++....+..... ...|+.|+++++++++++++++.++.|.++||||||
T Consensus 34 ~~~~~~~liGv~~Gl~~~~f~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ll~~~l~~~~~p~a~GsGip~ 111 (465)
T 1ots_A 34 AILFMAAVVGTLVGLAAVAFDKGVAWLQNQRMGALVHTADNY--PLLLTVAFLCSAVLAMFGYFLVRKYAPEAGGSGIPE 111 (465)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSH--HHHHHHHHHHHHHHHHHHHHHHHHHCGGGSSCSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc--ccHHHHHHHHHHHHHHHHHHHHHHhCccccCCChHH
Confidence 457799999999999999999999999999987754322111 122445667788888999999999999999999999
Q ss_pred HHHHHcCCCCCCcchhHHHHHHHHHHHhhhccccccCCchhHHHHHHHHHHHhhccCccccccchhhhcccCChhhhhhH
Q 003801 175 VKAYLNGVDAPGILSFRTLVIKIIGSISAVSSSLLVGKAGPMVHTGACVASLLGQGGSKKYGLTWKWLRFFKNDRDRRDF 254 (794)
Q Consensus 175 v~~~lng~~~~~~~~~~tl~~K~~~~~~sv~sGlsvG~EGP~vhiGa~igs~l~~~~s~~~~l~~~~l~~f~~~~~~r~l 254 (794)
|+++++|.+ +..++|+++.|++++++++++|+|+|||||++|+||++|+.++| .+ +. ++++|||++
T Consensus 112 v~~~l~~~~--~~~~~r~~~~k~~~~~lti~sG~s~GrEGP~vqiGa~ig~~l~~----~~-------~l-~~~~~~r~l 177 (465)
T 1ots_A 112 IEGALEDQR--PVRWWRVLPVKFFGGLGTLGGGMVLGREGPTVQIGGNIGRMVLD----IF-------RL-KGDEARHTL 177 (465)
T ss_dssp HHHHHTTCS--CCCHHHHHHHHHHHHHHHHHTTCSCBSHHHHHHHHHHHHHHHHH----HT-------TC-CSHHHHHHH
T ss_pred HHHHHhCCC--CCCcHHHHHHHHHHHHHHHhcCCCcCCcchHHHHHHHHHHHHHH----Hh-------cc-CCHHHHHHH
Confidence 999999853 45678999999999999999999999999999999999999997 23 21 378899999
Q ss_pred HHHhhhhhhhhhhcccchhHHHHHHHHhhhhhhhH--HHHHHHHHHHHHHHHHHHHHHhhcCcccccCCCceeEEeeccC
Q 003801 255 VTCGSAAGIAAAFRAPVGGLLFAIEEMASWWRSAL--LWRAFFTTAIVAILLRAFIDICKSGKCGLFGTGGLIMYDVYSA 332 (794)
Q Consensus 255 v~~GaaAGvaaaF~APigGvLFalE~~~~~~~~~~--~~~~f~~~~va~~v~~~l~~~~~~~~~~~fg~~~~~~f~v~~~ 332 (794)
++||+|||+||+|||||||++|++||+.++|+.+. ++++++++.+++++.+.+ +|..+ .|+++.
T Consensus 178 i~~GaaAGlaAaF~APlaGvlFalE~l~~~~~~~~~~~~~~~~as~~a~~v~~~~-----------~G~~~--~f~~~~- 243 (465)
T 1ots_A 178 LATGAAAGLAAAFNAPLAGILFIIEEMRPQFRYTLISIKAVFIGVIMSTIMYRIF-----------NHEVA--LIDVGK- 243 (465)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTTSCSSSCCCCCHHHHHHHHHHHHHHHHHH-----------SCSCC--SSCCCC-
T ss_pred HHHHHHHHHHHHHCCchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH-----------cCCCc--eeecCC-
Confidence 99999999999999999999999999999998776 889998888888888753 34444 344442
Q ss_pred CcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHHhchhhhccCCCCCCCCC
Q 003801 333 DASYHLADVPLVLLLGVVGGILGSLYNFLLDKVLRIYNFINEKGIAPKIFLACTISILTSCLLFGLPWLASCRPCPSDAS 412 (794)
Q Consensus 333 ~~~~~~~~l~~~illGv~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~c~~~~~~~~ 412 (794)
....++.++++++++|+++|++|.+|++++.++.+++++++..+++++++++++++++++++.+++|.+
T Consensus 244 ~~~~~~~~l~~~illGi~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gl~~g~l~~~~P~~----------- 312 (465)
T 1ots_A 244 LSDAPLNTLWLYLILGIIFGIFGPIFNKWVLGMQDLLHRVHGGNITKWVLMGGAIGGLCGLLGFVAPAT----------- 312 (465)
T ss_dssp CCCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCGGG-----------
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCchhHHHHHHHHHHHHHHHHHHhHhh-----------
Confidence 334567899999999999999999999999999999887653233445678889999999999988876
Q ss_pred CcCCCCCCCCcccccccCCCccchhhhhhcCCcHHHHHhhhccCCCCchhhHHHHHHHHHHHHHHHHhhcCCCCcccchH
Q 003801 413 EACPTIGRSGNYKKFQCAPGYYNDLASLIFNTNDDAIRNLFSKDTDKEFQHSSMLIFFVTCFSLSVLSYGIVAPAGLFVP 492 (794)
Q Consensus 413 ~~~p~~g~~g~~~~~~c~~g~y~~la~l~~~~~~~~i~~lf~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~P 492 (794)
.| ++++.++.++++ ++++..+++++++|+++|++|+|+|+|||+|+|
T Consensus 313 -----lG------------------------~G~~~i~~~~~~----~~~~~~l~~~~~~K~~~t~lt~gsG~~GGif~P 359 (465)
T 1ots_A 313 -----SG------------------------GGFNLIPIATAG----NFSMGMLVFIFVARVITTLLCFSSGAPGGIFAP 359 (465)
T ss_dssp -----SS------------------------CSTTHHHHHHHT----CSCHHHHHHHHHHHHHHHHHHHHTTCSSBSHHH
T ss_pred -----cC------------------------ChHHHHHHHHcC----CchHHHHHHHHHHHHHHHHHHHcCCCChhhhHH
Confidence 22 123456667763 356677888999999999999999999999999
Q ss_pred HHHHHHHHhHHHHHHhcc---ccCcchHHHHHHHHhhhhhhhcchhhHHHHHHHHHhCCcchHHHHHHHHHHHHHHHhhh
Q 003801 493 AIVTGASYGRFVGMLVGS---HSNLNHGLYAVLGAASFLGGSMRMTVSLCVIILELTNNLLLLPMIMLVLLISKTVADAF 569 (794)
Q Consensus 493 sl~iGa~~G~l~g~~~~~---~~~~~~~~~alvGaaa~l~g~~r~pls~~vi~~ElTg~~~~l~pimia~~ia~~v~~~~ 569 (794)
++++||++|+++|.+++. ....+|+.||++||||+++|++|+|+|+++|++|+||++++++|+|+++++|+++++.+
T Consensus 360 sl~iGA~~G~~~g~~~~~~~p~~~~~~~~~alvGmaa~~a~v~raPlt~ivlv~Eltg~~~~llpl~ia~~iA~~v~~~~ 439 (465)
T 1ots_A 360 MLALGTVLGTAFGMVAVELFPQYHLEAGTFAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMIITGLGATLLAQFT 439 (465)
T ss_dssp HHHHHHHHHHHHHHHHHHHCGGGTCCHHHHHHHHHTHHHHHTSCCHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999998764 23478999999999999999999999999999999999999999999999999999998
Q ss_pred -cchHHHHHHHHc
Q 003801 570 -NGNIYDLIMKAK 581 (794)
Q Consensus 570 -~~~iy~~~l~~~ 581 (794)
++++|+.+++++
T Consensus 440 ~~~~iY~~~l~~~ 452 (465)
T 1ots_A 440 GGKPLYSAILART 452 (465)
T ss_dssp TCCCHHHHHHHHH
T ss_pred CCCChHHHHHHHH
Confidence 689999999865
No 4
>4ene_A CLC-EC1, H(+)/CL(-) exchange transporter CLCA; membrane protein, coupled ION transporter, cell membrane, TR protein; HET: DMU MAL; 2.40A {Escherichia coli k-12} PDB: 1ots_A 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A 2fed_A 2fec_A 1otu_A 2htl_A 2ht2_A 3ejy_A 1ott_A 2h2s_A 4fg6_A 2ht4_A 4ftp_A 3ejz_A 2ht3_A 2htk_A ...
Probab=100.00 E-value=1.5e-67 Score=595.35 Aligned_cols=408 Identities=25% Similarity=0.418 Sum_probs=339.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHhhcccccCCCHHHHH
Q 003801 97 WSLCFLIGLIVGLIGFLNNLAVENIAGTKFVVTSNMMLANKFGMAFLSFSIPNLVLTLFASIVTATVAPVAAGSGIPEVK 176 (794)
Q Consensus 97 w~~~~liGv~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~p~a~GsGipev~ 176 (794)
+++++++|+++|+++.+|+..+++++++++....+. ...++..|+.++.++.++++++++++.+++|.++|||||||+
T Consensus 21 ~~~~~liGi~~Gl~~~~f~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGip~v~ 98 (446)
T 4ene_A 21 LFMAAVVGTLVGLAAVAFDKGVAWLQNQRMGALVHT--ADNYPLLLTVAFLCSAVLAMFGYFLVRKYAPEAGGSGIPEIE 98 (446)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--SSSHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGSSCSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cccchHHHHHHHHHHHHHHHHHHHHHHHhCcccCCCCHHHHH
Confidence 448999999999999999999999999988765432 122333444455566677888899999999999999999999
Q ss_pred HHHcCCCCCCcchhHHHHHHHHHHHhhhccccccCCchhHHHHHHHHHHHhhccCccccccchhhhcccCChhhhh-hHH
Q 003801 177 AYLNGVDAPGILSFRTLVIKIIGSISAVSSSLLVGKAGPMVHTGACVASLLGQGGSKKYGLTWKWLRFFKNDRDRR-DFV 255 (794)
Q Consensus 177 ~~lng~~~~~~~~~~tl~~K~~~~~~sv~sGlsvG~EGP~vhiGa~igs~l~~~~s~~~~l~~~~l~~f~~~~~~r-~lv 255 (794)
++++|. .+..++|+++.|++++++++++|+|+|||||+||+||++|++++| ++++ +++|+| +++
T Consensus 99 ~~l~~~--~~~~~~r~~~~k~~~~~lti~~G~s~GrEGP~vqiGa~ig~~~~~----~~~~---------~~~~~r~~ll 163 (446)
T 4ene_A 99 GALEDQ--RPVRWWRVLPVKFFGGLGTLGGGMVLGREGPTVQIGGNIGRMVLD----IFRL---------KGDEARHTLL 163 (446)
T ss_dssp HHHHTC--SCCCHHHHHHHHHHHHHHHHHTTCSCBSHHHHHHHHHHHHHHHHH----HTTC---------CSHHHHHHHH
T ss_pred HHHhCC--CccchHHHHHHHHHHHHHHHhcCCccCCcchHHHHHHHHHHHHHH----HcCC---------CHHHHHHHHH
Confidence 999984 344568999999999999999999999999999999999999997 3443 567776 999
Q ss_pred HHhhhhhhhhhhcccchhHHHHHHHHhhhhhh--hHHHHHHHHHHHHHHHHHHHHHHhhcCcccccCCCceeEEeeccCC
Q 003801 256 TCGSAAGIAAAFRAPVGGLLFAIEEMASWWRS--ALLWRAFFTTAIVAILLRAFIDICKSGKCGLFGTGGLIMYDVYSAD 333 (794)
Q Consensus 256 ~~GaaAGvaaaF~APigGvLFalE~~~~~~~~--~~~~~~f~~~~va~~v~~~l~~~~~~~~~~~fg~~~~~~f~v~~~~ 333 (794)
+||+|||+||+|||||+|++|++||+.++|+. +.++++++++.+++++.+.+ +|..+ .|+++. .
T Consensus 164 ~aGaaAG~aaaF~aPlaGvlFalE~l~~~~~~~~~~~~~~~~as~~a~~v~~~~-----------~g~~~--~~~~~~-~ 229 (446)
T 4ene_A 164 ATGAAAGLAAAFNAPLAGILFIIEEMRPQFRYTLISIKAVFIGVIMSTIMYRIF-----------NHEVA--LIDVGK-L 229 (446)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTSCSSSCCCCCHHHHHHHHHHHHHHHHHT-----------TTTCC--SCCCCC-C
T ss_pred HHHHHHHHHHHhCCcchHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHH-----------cCCCc--eeecCC-C
Confidence 99999999999999999999999999988776 56889999998888888753 33333 344442 3
Q ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchH-HHHHHHHHHHHHHHhchhhhccCCCCCCCCC
Q 003801 334 ASYHLADVPLVLLLGVVGGILGSLYNFLLDKVLRIYNFINEKGIAPKI-FLACTISILTSCLLFGLPWLASCRPCPSDAS 412 (794)
Q Consensus 334 ~~~~~~~l~~~illGv~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~c~~~~~~~~ 412 (794)
..++..++++++++|+++|++|.+|++++.++.+++++++. .++.|. +.+.+++++++++.++.|..
T Consensus 230 ~~~~~~~l~~~illGi~~Gl~g~~f~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~g~~~g~l~~~~p~~----------- 297 (446)
T 4ene_A 230 SDAPLNTLWLYLILGIIFGIFGPIFNKWVLGMQDLLHRVHG-GNITKWVLMGGAIGGLCGLLGFVAPAT----------- 297 (446)
T ss_dssp CCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHHHCGGG-----------
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cchhHHHHHHHHHHHHHHHHHHHhHhh-----------
Confidence 34567899999999999999999999999999998887653 233443 34556677888888877765
Q ss_pred CcCCCCCCCCcccccccCCCccchhhhhhcCCcHHHHHhhhccCCCCchhhHHHHHHHHHHHHHHHHhhcCCCCcccchH
Q 003801 413 EACPTIGRSGNYKKFQCAPGYYNDLASLIFNTNDDAIRNLFSKDTDKEFQHSSMLIFFVTCFSLSVLSYGIVAPAGLFVP 492 (794)
Q Consensus 413 ~~~p~~g~~g~~~~~~c~~g~y~~la~l~~~~~~~~i~~lf~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~P 492 (794)
.| ++++.++.++++ ++++..|++++++|+++|++|+|+|+|||+|+|
T Consensus 298 -----~G------------------------~G~~~i~~~~~~----~~~~~~L~~~~~~K~~~t~lt~gsG~~GGif~P 344 (446)
T 4ene_A 298 -----SG------------------------GGFNLIPIATAG----NFSMGMLVFIFVARVITTLLCFSSGAPGGIFAP 344 (446)
T ss_dssp -----SS------------------------CCSTHHHHHHTT----CSCHHHHHHHHHHHHHHHHHHHTTTCSSBSHHH
T ss_pred -----cC------------------------CcHHHHHHHHcC----CchHHHHHHHHHHHHHHHHHHHccCCCcchhHH
Confidence 22 112335555542 456678888999999999999999999999999
Q ss_pred HHHHHHHHhHHHHHHhccc---cCcchHHHHHHHHhhhhhhhcchhhHHHHHHHHHhCCcchHHHHHHHHHHHHHHHhhh
Q 003801 493 AIVTGASYGRFVGMLVGSH---SNLNHGLYAVLGAASFLGGSMRMTVSLCVIILELTNNLLLLPMIMLVLLISKTVADAF 569 (794)
Q Consensus 493 sl~iGa~~G~l~g~~~~~~---~~~~~~~~alvGaaa~l~g~~r~pls~~vi~~ElTg~~~~l~pimia~~ia~~v~~~~ 569 (794)
++++||++|+++|.+++.. ...+|+.||++||||+++|++|+|+|+++|++|+||++++++|+|+++++|+++++.+
T Consensus 345 sl~iGA~~G~~~g~~~~~~~p~~~~~~~~~a~vGmaa~~a~~~~aPlt~~vl~~Eltg~~~~~lpl~ia~~ia~~v~~~~ 424 (446)
T 4ene_A 345 MLALGTVLGTAFGMVAVELFPQYHLEAGTFAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMIITGLGATLLAQFT 424 (446)
T ss_dssp HHHHHHHHHHHHHHHHHHHCGGGTCCHHHHHHHHHTHHHHHHTCCHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhCCccccCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHCChhHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999987652 3478999999999999999999999999999999999999999999999999999999
Q ss_pred -cchHHHHHHHH
Q 003801 570 -NGNIYDLIMKA 580 (794)
Q Consensus 570 -~~~iy~~~l~~ 580 (794)
++++||.++++
T Consensus 425 ~~~~iY~~~l~r 436 (446)
T 4ene_A 425 GGKPLYSAILAR 436 (446)
T ss_dssp TCCCHHHHHHHH
T ss_pred CCCChHHHHHHH
Confidence 79999998864
No 5
>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1
Probab=99.85 E-value=4.3e-21 Score=200.03 Aligned_cols=177 Identities=25% Similarity=0.369 Sum_probs=124.9
Q ss_pred CccccccccccccceeccccccceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccC
Q 003801 584 PYLETHVEPYMRQLTVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAF 663 (794)
Q Consensus 584 p~l~~~~~~~l~~l~v~diM~~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~ 663 (794)
|.|.+... .+.+++|+|+|+++++++.+++++.++.++|.++++++|||||++ ++++++|+|+++||++++.....
T Consensus 1 P~L~~~~~-~~~~~~v~diMt~~vvtv~~~~tv~~~~~lm~~~~~~~~PVVd~~---~~~~LvGiIt~~dl~~~l~~~~~ 76 (250)
T 2d4z_A 1 PELSWSSA-NKYNIQVGDIMVRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDTP---DTNTLLGSIDRTEVEGLLQRRIS 76 (250)
T ss_dssp --CCCCCC-CCSSCBTTSSSBSSCCCEETTCBHHHHHHHHHHCCCSEEEEESCT---TTCBEEEEEEHHHHHHHHHHHHH
T ss_pred CCCCCCCc-ccCCCChHHhcCCCCeEECCCCCHHHHHHHHHhcCCCEEEEEecC---CCCeEEEEEEHHHHHHHHHHhhh
Confidence 56666655 678899999999999999999999999999999999999999974 23689999999999988765421
Q ss_pred CCCCCCCC-----------Cc-------ccccchhhhhh------cc---------------------------------
Q 003801 664 LPTPNPTV-----------ND-------AFSQFSAVDFA------KR--------------------------------- 686 (794)
Q Consensus 664 ~~~~~~~~-----------~~-------~~~~~~~~d~~------~~--------------------------------- 686 (794)
...+.... .+ ....+...+.. +.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 156 (250)
T 2d4z_A 77 AYRRQPAAAAEADEEGRNGETGASFTGEAESSFAYIDQEDAEGQQREGLEAVKVQTEDPRPPSPVPAEEPTQTSGIYQKK 156 (250)
T ss_dssp TTSSSCCCCCCBCCC-----------------------------------------------------------------
T ss_pred hhhhhhhhhhcccccccccccccccccCCcceeeeccccccccccccCccccCCcccCCccccccccccccccccccccc
Confidence 11100000 00 00000000000 00
Q ss_pred --CCCCCCCccccccchh--------hhhccccccc-ccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCcEE
Q 003801 687 --GSGNGDKIEDIELSEE--------EMEMYVDLHP-FANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVM 755 (794)
Q Consensus 687 --~~~~~~~i~di~~~~~--------~~~~~idl~~-im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~vv 755 (794)
......+..+++++.+ ++++.+|+++ +|+++|++|.+++||.+++.+|+++|++|+||++ +|+++
T Consensus 157 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~Vdl~~~~md~sP~tv~~~tsL~~v~~LF~~lglr~l~V~~----~GrLV 232 (250)
T 2d4z_A 157 QKGTGQVASRFEEMLTLEEIYRWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTS----MGKLV 232 (250)
T ss_dssp ----------CCSCCBHHHHHHHHHHHTTCBCCTTSSCEECCSCCBCTTCBHHHHHHHHHHHTCSEEEEEE----TTEEE
T ss_pred cccccccCcccccccChhhhhhHHHHhcCceeccccccccCCCeEECCCCcHHHHHHHHHHhCCeEEEEEE----CCEEE
Confidence 0000111223334333 3677888885 7999999999999999999999999999999998 59999
Q ss_pred EEEecccccHHHH
Q 003801 756 GILTRHDFMPEHI 768 (794)
Q Consensus 756 GIITr~Dll~~~~ 768 (794)
|||||+||+++..
T Consensus 233 GIVTrkDl~kai~ 245 (250)
T 2d4z_A 233 GVVALAEIQAAIE 245 (250)
T ss_dssp EEEEHHHHHHHHH
T ss_pred EEEEHHHHHHHHH
Confidence 9999999998765
No 6
>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}
Probab=99.74 E-value=1.4e-18 Score=170.53 Aligned_cols=150 Identities=19% Similarity=0.243 Sum_probs=113.2
Q ss_pred ccccceeccccccceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCCCCC
Q 003801 593 YMRQLTVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNPTVN 672 (794)
Q Consensus 593 ~l~~l~v~diM~~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~~~~ 672 (794)
.+++++|+|+|+++++++++++++.++++.|.+++++++||+|++ ++++|+|+.+|+++.+....
T Consensus 14 ~l~~~~V~diM~~~v~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~-----g~lvGiit~~Dll~~~~~~~---------- 78 (170)
T 4esy_A 14 AIRQVPIRDILTSPVVTVREDDTLDAVAKTMLEHQIGCAPVVDQN-----GHLVGIITESDFLRGSIPFW---------- 78 (170)
T ss_dssp HHHTSBGGGGCCSCCCCEETTSBHHHHHHHHHHTTCSEEEEECTT-----SCEEEEEEGGGGGGGTCCTT----------
T ss_pred HHcCCCHHHhcCCCCcEECCcCcHHHHHHHHHHcCCeEEEEEcCC-----ccEEEEEEHHHHHHHHhhcc----------
Confidence 467889999999999999999999999999999999999999987 89999999999965322110
Q ss_pred cccccchhhhhhccCCCCCCCccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCC
Q 003801 673 DAFSQFSAVDFAKRGSGNGDKIEDIELSEEEMEMYVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGS 752 (794)
Q Consensus 673 ~~~~~~~~~d~~~~~~~~~~~i~di~~~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g 752 (794)
.....+..... ....+.. ...+......++++|++++++|++++++.+|.++|.+++.+++||+| +|
T Consensus 79 ----~~~~~~~~~~~----~~~~~~~-~~~~~~~~~~v~~im~~~~~tv~~~~~l~~a~~~m~~~~~~~lpVvd----~g 145 (170)
T 4esy_A 79 ----IYEASEILSRA----IPAPEVE-HLFETGRKLTASAVMTQPVVTAAPEDSVGSIADQMRRHGIHRIPVVQ----DG 145 (170)
T ss_dssp ----HHHHHHHHTTT----SCHHHHH-HHHHHHTTCBHHHHCBCCSCCBCTTSBHHHHHHHHHHTTCSEEEEEE----TT
T ss_pred ----ccchhhhhhhc----cchhhHH-hhhccccccchhhhcccCcccCCcchhHHHHHHHHHHcCCcEEEEEE----CC
Confidence 00000000000 0000000 00011224567899999999999999999999999999999999998 48
Q ss_pred cEEEEEecccccHHHHHh
Q 003801 753 PVMGILTRHDFMPEHILA 770 (794)
Q Consensus 753 ~vvGIITr~Dll~~~~~~ 770 (794)
+++||||++|++++...+
T Consensus 146 ~lvGivt~~Dil~~l~~~ 163 (170)
T 4esy_A 146 VPVGIVTRRDLLKLLLLE 163 (170)
T ss_dssp EEEEEEEHHHHTTTSCCC
T ss_pred EEEEEEEHHHHHHHHHhc
Confidence 999999999999876543
No 7
>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}
Probab=99.71 E-value=4.8e-17 Score=155.46 Aligned_cols=126 Identities=14% Similarity=0.244 Sum_probs=111.6
Q ss_pred ccccceecccccc--ceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCCC
Q 003801 593 YMRQLTVGDVVTA--PLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNPT 670 (794)
Q Consensus 593 ~l~~l~v~diM~~--~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~~ 670 (794)
.+..++|+|+|++ +++++++++++.++++.|.+++++.+||+|++ .++++|+|+.+|++..+.+..
T Consensus 19 ~l~~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~----~~~lvGivt~~dl~~~~~~~~-------- 86 (148)
T 3lv9_A 19 EFEEKKIREIMVPRTDMVCIYESDSEEKILAILKEEGVTRYPVCRKN----KDDILGFVHIRDLYNQKINEN-------- 86 (148)
T ss_dssp GGGTCBGGGTSEETTTCCCEETTCCHHHHHHHHHHSCCSEEEEESSS----TTSEEEEEEHHHHHHHHHHHS--------
T ss_pred ccCCCCHHHccccHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCC----CCcEEEEEEHHHHHHHHhcCC--------
Confidence 3678899999998 99999999999999999999999999999874 158999999999987664321
Q ss_pred CCcccccchhhhhhccCCCCCCCccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCC
Q 003801 671 VNDAFSQFSAVDFAKRGSGNGDKIEDIELSEEEMEMYVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISN 750 (794)
Q Consensus 671 ~~~~~~~~~~~d~~~~~~~~~~~i~di~~~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~ 750 (794)
..+++++| +++.++++++++.+++++|.+.+.+++||+|+
T Consensus 87 ------------------------------------~~~v~~~m-~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~--- 126 (148)
T 3lv9_A 87 ------------------------------------KIELEEIL-RDIIYISENLTIDKALERIRKEKLQLAIVVDE--- 126 (148)
T ss_dssp ------------------------------------CCCGGGTC-BCCEEEETTSBHHHHHHHHHHHTCSEEEEECT---
T ss_pred ------------------------------------CccHHHhc-CCCeEECCCCCHHHHHHHHHhcCCeEEEEEeC---
Confidence 13467889 88999999999999999999999999999997
Q ss_pred CCcEEEEEecccccHHHHHh
Q 003801 751 GSPVMGILTRHDFMPEHILA 770 (794)
Q Consensus 751 ~g~vvGIITr~Dll~~~~~~ 770 (794)
+|+++|+||++|++++...+
T Consensus 127 ~g~~~Giit~~dil~~l~~~ 146 (148)
T 3lv9_A 127 YGGTSGVVTIEDILEEIVGE 146 (148)
T ss_dssp TSSEEEEEEHHHHHHHHHHT
T ss_pred CCCEEEEEEHHHHHHHHhCc
Confidence 79999999999999988764
No 8
>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}
Probab=99.70 E-value=9.6e-17 Score=157.80 Aligned_cols=129 Identities=16% Similarity=0.213 Sum_probs=109.1
Q ss_pred ccccceeccccc--cceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCCC
Q 003801 593 YMRQLTVGDVVT--APLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNPT 670 (794)
Q Consensus 593 ~l~~l~v~diM~--~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~~ 670 (794)
.++.++|+|+|+ ++++++++++++.++++.|++++++.+||+|++ .++++|+|+.+|++..+.+..
T Consensus 38 ~l~~~~v~diM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~----~~~lvGivt~~dl~~~~~~~~-------- 105 (172)
T 3lhh_A 38 RLDERTISSLMVPRSDIVFLDLNLPLDANLRTVMQSPHSRFPVCRNN----VDDMVGIISAKQLLSESIAGE-------- 105 (172)
T ss_dssp -----CTTTTSEEGGGCCCEETTSCHHHHHHHHHTCCCSEEEEESSS----TTSEEEEEEHHHHHHHHHTTC--------
T ss_pred ccCCCCHHHhCccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEeCC----CCeEEEEEEHHHHHHHHhhcC--------
Confidence 366789999999 688999999999999999999999999999873 168999999999987654311
Q ss_pred CCcccccchhhhhhccCCCCCCCccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCC
Q 003801 671 VNDAFSQFSAVDFAKRGSGNGDKIEDIELSEEEMEMYVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISN 750 (794)
Q Consensus 671 ~~~~~~~~~~~d~~~~~~~~~~~i~di~~~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~ 750 (794)
...++++| ++++++++++++.+++++|.+.+.+++||+|+
T Consensus 106 ------------------------------------~~~v~~im-~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~--- 145 (172)
T 3lhh_A 106 ------------------------------------RLELVDLV-KNCNFVPNSLSGMELLEHFRTTGSQMVFVVDE--- 145 (172)
T ss_dssp ------------------------------------CCCGGGGC-BCCEEEETTCCHHHHHHHHHHHTCSEEEEECT---
T ss_pred ------------------------------------cccHHHHh-cCCeEeCCCCCHHHHHHHHHHcCCeEEEEEeC---
Confidence 13467889 89999999999999999999999999999997
Q ss_pred CCcEEEEEecccccHHHHHhcCc
Q 003801 751 GSPVMGILTRHDFMPEHILALNP 773 (794)
Q Consensus 751 ~g~vvGIITr~Dll~~~~~~~~~ 773 (794)
+|+++||||++|++++...+...
T Consensus 146 ~g~lvGiit~~Dil~~l~~~~~d 168 (172)
T 3lhh_A 146 YGDLKGLVTLQDMMDALTGEFFQ 168 (172)
T ss_dssp TSCEEEEEEHHHHHHHHHTTCC-
T ss_pred CCCEEEEeeHHHHHHHHhCCCcc
Confidence 79999999999999988765543
No 9
>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1
Probab=99.69 E-value=1.6e-16 Score=148.62 Aligned_cols=127 Identities=20% Similarity=0.260 Sum_probs=111.3
Q ss_pred cccceeccccccceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCCCCCc
Q 003801 594 MRQLTVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNPTVND 673 (794)
Q Consensus 594 l~~l~v~diM~~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~~~~~ 673 (794)
|++++++|+|++++.++++++++.++++.|.+++++.+||+| + ++++|+|+.+|+...+.+...
T Consensus 1 l~~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~-----~~~~Givt~~dl~~~~~~~~~---------- 64 (133)
T 2ef7_A 1 MEEEIVKEYMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVD-G-----NKPVGIITERDIVKAIGKGKS---------- 64 (133)
T ss_dssp CCCCBGGGTSBCSCCEEETTCBHHHHHHHHHHHTCSEEEEEE-T-----TEEEEEEEHHHHHHHHHTTCC----------
T ss_pred CCcccHHHhccCCCEEECCCCcHHHHHHHHHhcCCCEEEEEE-C-----CEEEEEEcHHHHHHHHhcCCC----------
Confidence 457899999999999999999999999999999999999999 5 899999999999876653210
Q ss_pred ccccchhhhhhccCCCCCCCccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCc
Q 003801 674 AFSQFSAVDFAKRGSGNGDKIEDIELSEEEMEMYVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSP 753 (794)
Q Consensus 674 ~~~~~~~~d~~~~~~~~~~~i~di~~~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~ 753 (794)
....++++|++++.++++++++.++.+.|.+.+.+++||+|+ +|+
T Consensus 65 --------------------------------~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~---~g~ 109 (133)
T 2ef7_A 65 --------------------------------LETKAEEFMTASLITIREDSPITGALALMRQFNIRHLPVVDD---KGN 109 (133)
T ss_dssp --------------------------------TTCBGGGTSEECCCCEETTSBHHHHHHHHHHHTCSEEEEECT---TSC
T ss_pred --------------------------------cccCHHHHcCCCCEEECCCCCHHHHHHHHHHcCCCEEEEECC---CCe
Confidence 013467889889999999999999999999999999999997 789
Q ss_pred EEEEEecccccHHHHHhc
Q 003801 754 VMGILTRHDFMPEHILAL 771 (794)
Q Consensus 754 vvGIITr~Dll~~~~~~~ 771 (794)
++|+||++|+++...+..
T Consensus 110 ~~Giit~~dll~~~~~~~ 127 (133)
T 2ef7_A 110 LKGIISIRDITRAIDDMF 127 (133)
T ss_dssp EEEEEEHHHHHHHHHHHC
T ss_pred EEEEEEHHHHHHHHHHHH
Confidence 999999999998876653
No 10
>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}
Probab=99.69 E-value=6.3e-17 Score=151.17 Aligned_cols=125 Identities=16% Similarity=0.176 Sum_probs=104.2
Q ss_pred cccceecccccc--ceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCCCC
Q 003801 594 MRQLTVGDVVTA--PLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNPTV 671 (794)
Q Consensus 594 l~~l~v~diM~~--~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~~~ 671 (794)
+++++|+|+|++ +++++++++++.++++.|++++++.+||+|++ .++++|+|+.+|++..+.+..
T Consensus 3 l~~~~v~~iM~~~~~v~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~----~~~~~Givt~~dl~~~~~~~~--------- 69 (130)
T 3i8n_A 3 AQDVPVTQVMTPRPVVFRVDATMTINEFLDKHKDTPFSRPLVYSEQ----KDNIIGFVHRLELFKMQQSGS--------- 69 (130)
T ss_dssp ----CCTTTSCCBCCCCEEETTSBHHHHHHHTTTCSCSCCEEESSS----TTCEEEECCHHHHHHHHHTTT---------
T ss_pred cCcCCHhhCCCcHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEeCC----CCcEEEEEEHHHHHHHHhcCC---------
Confidence 567899999995 57799999999999999999999999999873 268999999999987764321
Q ss_pred CcccccchhhhhhccCCCCCCCccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCC
Q 003801 672 NDAFSQFSAVDFAKRGSGNGDKIEDIELSEEEMEMYVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNG 751 (794)
Q Consensus 672 ~~~~~~~~~~d~~~~~~~~~~~i~di~~~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~ 751 (794)
....++++| +++.++++++++.+++++|.+.+.+++||+|+ +
T Consensus 70 ----------------------------------~~~~v~~~m-~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~---~ 111 (130)
T 3i8n_A 70 ----------------------------------GQKQLGAVM-RPIQVVLNNTALPKVFDQMMTHRLQLALVVDE---Y 111 (130)
T ss_dssp ----------------------------------TTSBHHHHS-EECCEEETTSCHHHHHHHHHHHTCCEEEEECT---T
T ss_pred ----------------------------------CcCCHHHHh-cCCcCcCCCCcHHHHHHHHHHcCCeEEEEEcC---C
Confidence 012356778 45889999999999999999999999999997 7
Q ss_pred CcEEEEEecccccHHHHH
Q 003801 752 SPVMGILTRHDFMPEHIL 769 (794)
Q Consensus 752 g~vvGIITr~Dll~~~~~ 769 (794)
|+++|+||++|++++...
T Consensus 112 g~~vGivt~~dil~~l~g 129 (130)
T 3i8n_A 112 GTVLGLVTLEDIFEHLVG 129 (130)
T ss_dssp SCEEEEEEHHHHHHHHHT
T ss_pred CCEEEEEEHHHHHHHHcC
Confidence 999999999999987653
No 11
>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*
Probab=99.69 E-value=8.8e-17 Score=147.94 Aligned_cols=120 Identities=18% Similarity=0.207 Sum_probs=107.1
Q ss_pred ceeccccccceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCCCCCcccc
Q 003801 597 LTVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNPTVNDAFS 676 (794)
Q Consensus 597 l~v~diM~~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~~~~~~~~ 676 (794)
++++|+|++++.++++++++.++++.|.+++++.+||+|++ ++++|+|+.+|+...+....
T Consensus 1 ~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~-----~~~~G~vt~~dl~~~~~~~~-------------- 61 (122)
T 3kpb_A 1 TLVKDILSKPPITAHSNISIMEAAKILIKHNINHLPIVDEH-----GKLVGIITSWDIAKALAQNK-------------- 61 (122)
T ss_dssp CBHHHHCCSCCCCEETTSBHHHHHHHHHHHTCSCEEEECTT-----SBEEEEECHHHHHHHHHTTC--------------
T ss_pred CchHHhhCCCCEEeCCCCcHHHHHHHHHHcCCCeEEEECCC-----CCEEEEEEHHHHHHHHHhcc--------------
Confidence 36899999999999999999999999999999999999976 89999999999987664311
Q ss_pred cchhhhhhccCCCCCCCccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCcEEE
Q 003801 677 QFSAVDFAKRGSGNGDKIEDIELSEEEMEMYVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMG 756 (794)
Q Consensus 677 ~~~~~d~~~~~~~~~~~i~di~~~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~vvG 756 (794)
..++++|++++.++++++++.+++++|.+.+.+++||+|+ +|+++|
T Consensus 62 -------------------------------~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~---~g~~~G 107 (122)
T 3kpb_A 62 -------------------------------KTIEEIMTRNVITAHEDEPVDHVAIKMSKYNISGVPVVDD---YRRVVG 107 (122)
T ss_dssp -------------------------------CBGGGTSBSSCCCEETTSBHHHHHHHHHHHTCSEEEEECT---TCBEEE
T ss_pred -------------------------------cCHHHHhcCCCeEECCCCCHHHHHHHHHHhCCCeEEEECC---CCCEEE
Confidence 1467788899999999999999999999999999999997 799999
Q ss_pred EEecccccHHHHH
Q 003801 757 ILTRHDFMPEHIL 769 (794)
Q Consensus 757 IITr~Dll~~~~~ 769 (794)
+||++|+++++.+
T Consensus 108 ivt~~dl~~~l~~ 120 (122)
T 3kpb_A 108 IVTSEDISRLFGG 120 (122)
T ss_dssp EEEHHHHHHHHC-
T ss_pred EEeHHHHHHHhhc
Confidence 9999999987543
No 12
>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}
Probab=99.69 E-value=4.5e-17 Score=152.43 Aligned_cols=126 Identities=16% Similarity=0.158 Sum_probs=105.4
Q ss_pred cceecccccc--ceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCCCCCc
Q 003801 596 QLTVGDVVTA--PLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNPTVND 673 (794)
Q Consensus 596 ~l~v~diM~~--~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~~~~~ 673 (794)
+++|+|+|++ +++++++++++.++++.|++++++.+||+|++ +++++|+|+.+|+++.+.+... .
T Consensus 1 ~~~v~~iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVv~~~----~~~lvGivt~~dl~~~~~~~~~---~------ 67 (130)
T 3hf7_A 1 KVSVNDIMVPRNEIVGIDINDDWKSIVRQLTHSPHGRIVLYRDS----LDDAISMLRVREAYRLMTEKKE---F------ 67 (130)
T ss_dssp CCBHHHHSEEGGGCCEEETTSCHHHHHHHHHTCSSSEEEEESSS----GGGEEEEEEHHHHHHHHTSSSC---C------
T ss_pred CcCHHHhCccHHHEEEEcCCCCHHHHHHHHHHCCCCeEEEEcCC----CCcEEEEEEHHHHHHHHhccCc---c------
Confidence 3689999974 78999999999999999999999999999752 1799999999999876643110 0
Q ss_pred ccccchhhhhhccCCCCCCCccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCc
Q 003801 674 AFSQFSAVDFAKRGSGNGDKIEDIELSEEEMEMYVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSP 753 (794)
Q Consensus 674 ~~~~~~~~d~~~~~~~~~~~i~di~~~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~ 753 (794)
....++++| +++.++++++++.+++++|.+.+.+++||+|+ +|+
T Consensus 68 --------------------------------~~~~v~~~m-~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~---~g~ 111 (130)
T 3hf7_A 68 --------------------------------TKEIMLRAA-DEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDE---YGD 111 (130)
T ss_dssp --------------------------------CHHHHHHHS-BCCCEEETTCBHHHHHHHHHHHCCCEEEEECT---TSC
T ss_pred --------------------------------chhhHHHhc-cCCeEeCCCCcHHHHHHHHHhcCCeEEEEEcC---CCC
Confidence 012345677 67889999999999999999999999999997 799
Q ss_pred EEEEEecccccHHHHHh
Q 003801 754 VMGILTRHDFMPEHILA 770 (794)
Q Consensus 754 vvGIITr~Dll~~~~~~ 770 (794)
++||||++|++++...+
T Consensus 112 lvGiit~~Dil~~l~g~ 128 (130)
T 3hf7_A 112 IQGLVTVEDILEEIVGD 128 (130)
T ss_dssp EEEEEEHHHHHHHHHC-
T ss_pred EEEEeeHHHHHHHHhCC
Confidence 99999999999987654
No 13
>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}
Probab=99.69 E-value=3.1e-17 Score=154.75 Aligned_cols=128 Identities=20% Similarity=0.282 Sum_probs=104.6
Q ss_pred cceeccccc--cceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCCCCCc
Q 003801 596 QLTVGDVVT--APLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNPTVND 673 (794)
Q Consensus 596 ~l~v~diM~--~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~~~~~ 673 (794)
+++|+|+|+ ++++++++++++.++++.|++++++.+||+|++ .++++|+|+.+|++..+.+..
T Consensus 2 ~~~v~~iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~----~~~~vGivt~~dl~~~~~~~~----------- 66 (136)
T 3lfr_A 2 DLQVRDIMVPRSQMISIKATQTPREFLPAVIDAAHSRYPVIGES----HDDVLGVLLAKDLLPLILKAD----------- 66 (136)
T ss_dssp -CBHHHHSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSS----TTCEEEEEEGGGGGGGGGSSS-----------
T ss_pred CCChHhccccHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEcCC----CCcEEEEEEHHHHHHHHHhcc-----------
Confidence 578999999 578999999999999999999999999999874 158999999999965443100
Q ss_pred ccccchhhhhhccCCCCCCCccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCc
Q 003801 674 AFSQFSAVDFAKRGSGNGDKIEDIELSEEEMEMYVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSP 753 (794)
Q Consensus 674 ~~~~~~~~d~~~~~~~~~~~i~di~~~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~ 753 (794)
.....++++|++ ++++++++++.+++++|.+.+.+++||+|+ +|+
T Consensus 67 -------------------------------~~~~~v~~~m~~-~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~---~g~ 111 (136)
T 3lfr_A 67 -------------------------------GDSDDVKKLLRP-ATFVPESKRLNVLLREFRANHNHMAIVIDE---YGG 111 (136)
T ss_dssp -------------------------------GGGCCGGGTCBC-CCEEETTCBHHHHHHHHHHHTCCEEEEECT---TSC
T ss_pred -------------------------------CCCcCHHHHcCC-CeEECCCCcHHHHHHHHHhcCCeEEEEEeC---CCC
Confidence 012356788866 899999999999999999999999999998 799
Q ss_pred EEEEEecccccHHHHHhcCc
Q 003801 754 VMGILTRHDFMPEHILALNP 773 (794)
Q Consensus 754 vvGIITr~Dll~~~~~~~~~ 773 (794)
++||||++|+++....+...
T Consensus 112 lvGiit~~Dil~~l~~~~~d 131 (136)
T 3lfr_A 112 VAGLVTIEDVLEQIVGDIED 131 (136)
T ss_dssp EEEEEEHHHHHTTC------
T ss_pred EEEEEEHHHHHHHHhCCCcC
Confidence 99999999999987765543
No 14
>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}
Probab=99.68 E-value=5.9e-17 Score=151.27 Aligned_cols=123 Identities=19% Similarity=0.315 Sum_probs=104.6
Q ss_pred ccceeccccc--cceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCCCCC
Q 003801 595 RQLTVGDVVT--APLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNPTVN 672 (794)
Q Consensus 595 ~~l~v~diM~--~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~~~~ 672 (794)
.+++|+|+|+ ++++++++++++.++++.|++++++.+||+|++ .++++|+|+.+|++..+.+
T Consensus 3 ~~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~----~~~~~Givt~~dl~~~~~~------------ 66 (129)
T 3jtf_A 3 AERTVADIMVPRSRMDLLDISQPLPQLLATIIETAHSRFPVYEDD----RDNIIGILLAKDLLRYMLE------------ 66 (129)
T ss_dssp -CCBHHHHCEEGGGCCCEETTSCHHHHHHHHHHSCCSEEEEESSS----TTCEEEEEEGGGGGGGGTC------------
T ss_pred CCCCHHHhCccHHHeEEECCCCCHHHHHHHHHHcCCCEEEEEcCC----CCcEEEEEEHHHHHhHhcc------------
Confidence 4678999999 678999999999999999999999999999873 1689999999999553321
Q ss_pred cccccchhhhhhccCCCCCCCccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCC
Q 003801 673 DAFSQFSAVDFAKRGSGNGDKIEDIELSEEEMEMYVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGS 752 (794)
Q Consensus 673 ~~~~~~~~~d~~~~~~~~~~~i~di~~~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g 752 (794)
...+++++|++ ++++.+++++.+++++|.+.+.+++||+|+ +|
T Consensus 67 ---------------------------------~~~~v~~~m~~-~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~---~g 109 (129)
T 3jtf_A 67 ---------------------------------PALDIRSLVRP-AVFIPEVKRLNVLLREFRASRNHLAIVIDE---HG 109 (129)
T ss_dssp ---------------------------------TTSCGGGGCBC-CCEEETTCBHHHHHHHHHTSSCCEEEEECC----C
T ss_pred ---------------------------------CCcCHHHHhCC-CeEeCCCCcHHHHHHHHHhcCCeEEEEEeC---CC
Confidence 01235677854 889999999999999999999999999997 79
Q ss_pred cEEEEEecccccHHHHHh
Q 003801 753 PVMGILTRHDFMPEHILA 770 (794)
Q Consensus 753 ~vvGIITr~Dll~~~~~~ 770 (794)
+++|+||++|++++...+
T Consensus 110 ~~~Giit~~Dil~~l~ge 127 (129)
T 3jtf_A 110 GISGLVTMEDVLEQIVGD 127 (129)
T ss_dssp CEEEEEEHHHHHHHHHHT
T ss_pred CEEEEEEHHHHHHHHhCC
Confidence 999999999999988764
No 15
>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}
Probab=99.68 E-value=6.5e-17 Score=155.63 Aligned_cols=129 Identities=16% Similarity=0.203 Sum_probs=109.7
Q ss_pred cccceecccccc--ceeEEeccccHHHHHHHHhcCCCCeeEEe-eCCCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCCC
Q 003801 594 MRQLTVGDVVTA--PLQLFHGIEKAGNVVHVLRTTRHNGFPVI-DENPLSETPILYGLILRAHLITLLKKKAFLPTPNPT 670 (794)
Q Consensus 594 l~~l~v~diM~~--~vv~l~~~~sv~~a~~~L~~~~~~~fPVV-d~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~~ 670 (794)
++.++|+|+|++ +++++++++++.++++.|.+++++.+||+ |++ .++++|+|+.+|++..+.+..
T Consensus 17 l~~~~v~~iM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVv~d~~----~~~lvGivt~~dl~~~~~~~~-------- 84 (153)
T 3oco_A 17 MNDKVASDVMVDRTSMSVVDVDETIADALLLYLEEQYSRFPVTADND----KDKIIGYAYNYDIVRQARIDD-------- 84 (153)
T ss_dssp HHHCBHHHHSEEGGGCCCEETTSBHHHHHHHHHHHCCSEEEEEETTE----EEEEEEEEEHHHHHHHHHHHT--------
T ss_pred cCCCEeeeEecchhheEEEcCCCCHHHHHHHHHhCCCCEEEEEECCC----CCcEEEEEEHHHHHhHHhcCC--------
Confidence 567899999997 89999999999999999999999999999 542 179999999999987664321
Q ss_pred CCcccccchhhhhhccCCCCCCCccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCC
Q 003801 671 VNDAFSQFSAVDFAKRGSGNGDKIEDIELSEEEMEMYVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISN 750 (794)
Q Consensus 671 ~~~~~~~~~~~d~~~~~~~~~~~i~di~~~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~ 750 (794)
...++++| +++.++.+++++.+++++|.+.+.+++||+|+
T Consensus 85 ------------------------------------~~~v~~~m-~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~--- 124 (153)
T 3oco_A 85 ------------------------------------KAKISTIM-RDIVSVPENMKVPDVMEEMSAHRVPMAIVIDE--- 124 (153)
T ss_dssp ------------------------------------TSBGGGTC-BCCEEEETTSBHHHHHHHHHHTTCSCEEEECT---
T ss_pred ------------------------------------CCcHHHHh-CCCeEECCCCCHHHHHHHHHHcCCcEEEEEeC---
Confidence 13467889 89999999999999999999999999999997
Q ss_pred CCcEEEEEecccccHHHHHhcCcc
Q 003801 751 GSPVMGILTRHDFMPEHILALNPL 774 (794)
Q Consensus 751 ~g~vvGIITr~Dll~~~~~~~~~~ 774 (794)
+|+++||||++|++++...+...+
T Consensus 125 ~g~~vGivt~~dil~~l~~~~~de 148 (153)
T 3oco_A 125 YGGTSGIITDKDVYEELFGNLRDE 148 (153)
T ss_dssp TSCEEEEECHHHHHHHHHC-----
T ss_pred CCCEEEEeeHHHHHHHHhccCCCc
Confidence 799999999999999888765443
No 16
>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}
Probab=99.68 E-value=4e-17 Score=151.88 Aligned_cols=122 Identities=19% Similarity=0.321 Sum_probs=102.7
Q ss_pred cceeccccccc--eeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCCCCCc
Q 003801 596 QLTVGDVVTAP--LQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNPTVND 673 (794)
Q Consensus 596 ~l~v~diM~~~--vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~~~~~ 673 (794)
+++|+|+|+++ ++++++++++.++++.|++++++.+||+|++ .++++|+|+.+|+++.+.+..
T Consensus 2 ~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~----~~~~vGivt~~dl~~~~~~~~----------- 66 (127)
T 3nqr_A 2 DQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISED----KDHIEGILMAKDLLPFMRSDA----------- 66 (127)
T ss_dssp -CBHHHHSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSS----TTCEEEEEEGGGGGGGGSTTC-----------
T ss_pred CcCHHHhcccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEcCC----CCcEEEEEEHHHHHHHHhccC-----------
Confidence 57899999965 9999999999999999999999999999874 158999999999965432110
Q ss_pred ccccchhhhhhccCCCCCCCccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCc
Q 003801 674 AFSQFSAVDFAKRGSGNGDKIEDIELSEEEMEMYVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSP 753 (794)
Q Consensus 674 ~~~~~~~~d~~~~~~~~~~~i~di~~~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~ 753 (794)
....++++|++ +.++++++++.+++++|.+.+.+++||+|+ +|+
T Consensus 67 --------------------------------~~~~v~~~m~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~g~ 110 (127)
T 3nqr_A 67 --------------------------------EAFSMDKVLRT-AVVVPESKRVDRMLKEFRSQRYHMAIVIDE---FGG 110 (127)
T ss_dssp --------------------------------CCCCHHHHCBC-CCEEETTCBHHHHHHHHHHTTCCEEEEECT---TSC
T ss_pred --------------------------------CCCCHHHHcCC-CeEECCCCcHHHHHHHHHhcCCeEEEEEeC---CCC
Confidence 01345677854 789999999999999999999999999997 799
Q ss_pred EEEEEecccccHHHH
Q 003801 754 VMGILTRHDFMPEHI 768 (794)
Q Consensus 754 vvGIITr~Dll~~~~ 768 (794)
++|+||++|++++..
T Consensus 111 ~~Giit~~dll~~l~ 125 (127)
T 3nqr_A 111 VSGLVTIEDILELIV 125 (127)
T ss_dssp EEEEEEHHHHHHHC-
T ss_pred EEEEEEHHHHHHHHh
Confidence 999999999998754
No 17
>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A
Probab=99.67 E-value=3e-16 Score=148.49 Aligned_cols=123 Identities=14% Similarity=0.191 Sum_probs=107.6
Q ss_pred cceeccccccceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCC--eEEEEEeHHHHHHHHHhccCCCCCCCCCCc
Q 003801 596 QLTVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETP--ILYGLILRAHLITLLKKKAFLPTPNPTVND 673 (794)
Q Consensus 596 ~l~v~diM~~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~--~l~GiI~r~dL~~lL~~~~~~~~~~~~~~~ 673 (794)
+++++|+|+++++++++++++.++++.|.+++++.+||+|++ + +++|+|+++|++..+.+...
T Consensus 4 ~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~-----~~~~~~Givt~~dl~~~~~~~~~---------- 68 (141)
T 2rih_A 4 AIRTSELLKRPPVSLPETATIREVATELAKNRVGLAVLTARD-----NPKRPVAVVSERDILRAVAQRLD---------- 68 (141)
T ss_dssp -CBGGGGCCSCCEEEETTCBHHHHHHHHHHHTCSEEEEEETT-----EEEEEEEEEEHHHHHHHHHTTCC----------
T ss_pred ceEHHHHhcCCCeEeCCCCcHHHHHHHHHHcCCCEEEEEcCC-----CcceeEEEEEHHHHHHHHhcCCC----------
Confidence 478999999999999999999999999999999999999986 6 99999999999876543110
Q ss_pred ccccchhhhhhccCCCCCCCccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCc
Q 003801 674 AFSQFSAVDFAKRGSGNGDKIEDIELSEEEMEMYVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSP 753 (794)
Q Consensus 674 ~~~~~~~~d~~~~~~~~~~~i~di~~~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~ 753 (794)
....+.++|++++.+++++ ++.+++++|.+.+.+++||+|+ +|+
T Consensus 69 --------------------------------~~~~v~~~m~~~~~~v~~~-~l~~a~~~m~~~~~~~l~Vvd~---~g~ 112 (141)
T 2rih_A 69 --------------------------------LDGPAMPIANSPITVLDTD-PVHVAAEKMRRHNIRHVVVVNK---NGE 112 (141)
T ss_dssp --------------------------------TTSBSGGGCBCCCEEETTS-BHHHHHHHHHHHTCSEEEEECT---TSC
T ss_pred --------------------------------CCCCHHHHcCCCCeEEcCC-CHHHHHHHHHHcCCeEEEEEcC---CCc
Confidence 0234678899999999999 9999999999999999999997 789
Q ss_pred EEEEEecccccHHHHH
Q 003801 754 VMGILTRHDFMPEHIL 769 (794)
Q Consensus 754 vvGIITr~Dll~~~~~ 769 (794)
++|+||++|++++...
T Consensus 113 ~~Giit~~dll~~~~~ 128 (141)
T 2rih_A 113 LVGVLSIRDLCFERAI 128 (141)
T ss_dssp EEEEEEHHHHHSCHHH
T ss_pred EEEEEEHHHHHHHHHH
Confidence 9999999999886543
No 18
>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}
Probab=99.67 E-value=1.7e-16 Score=149.40 Aligned_cols=128 Identities=18% Similarity=0.284 Sum_probs=109.4
Q ss_pred cccccceeccccccceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHH-HHHHHhccCCCCCCCC
Q 003801 592 PYMRQLTVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHL-ITLLKKKAFLPTPNPT 670 (794)
Q Consensus 592 ~~l~~l~v~diM~~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL-~~lL~~~~~~~~~~~~ 670 (794)
+.+.+++++|+|++++.++++++++.++.+.|++++++.+||+|++ ++++|+|+++|+ ...+.....
T Consensus 3 ~~l~~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~-----~~~~Givt~~dl~~~~~~~~~~------- 70 (138)
T 2p9m_A 3 DTLKNIKVKDVMTKNVITAKRHEGVVEAFEKMLKYKISSLPVIDDE-----NKVIGIVTTTDIGYNLIRDKYT------- 70 (138)
T ss_dssp --CTTCBGGGTSBCSCCCEETTSBHHHHHHHHHHHTCCEEEEECTT-----CBEEEEEEHHHHHHHHTTTCCC-------
T ss_pred cccccCCHHHhhcCCceEECCCCcHHHHHHHHHHCCCcEEEEECCC-----CeEEEEEEHHHHHHHHHhhccc-------
Confidence 3567899999999999999999999999999999999999999986 899999999999 775532110
Q ss_pred CCcccccchhhhhhccCCCCCCCccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcC-----CCEEEEe
Q 003801 671 VNDAFSQFSAVDFAKRGSGNGDKIEDIELSEEEMEMYVDLHPFANASPYTVVETMSLAKALILFREVG-----LRHLLVI 745 (794)
Q Consensus 671 ~~~~~~~~~~~d~~~~~~~~~~~i~di~~~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~g-----lr~LpVV 745 (794)
....++++|++++.++++++++.++.+.|.+.+ .+++||+
T Consensus 71 -----------------------------------~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~l~Vv 115 (138)
T 2p9m_A 71 -----------------------------------LETTIGDVMTKDVITIHEDASILEAIKKMDISGKKEEIINQLPVV 115 (138)
T ss_dssp -----------------------------------SSCBHHHHSCSSCCCEETTSBHHHHHHHHTCC-----CCCEEEEE
T ss_pred -----------------------------------CCcCHHHHhCCCcEEECCCCCHHHHHHHHHhcCCccccccEEEEE
Confidence 013467788889999999999999999999999 9999999
Q ss_pred ecCCCCCcEEEEEecccccHHHHH
Q 003801 746 PKISNGSPVMGILTRHDFMPEHIL 769 (794)
Q Consensus 746 d~~~~~g~vvGIITr~Dll~~~~~ 769 (794)
|+ +|+++|+||++|+++...+
T Consensus 116 d~---~g~~~Giit~~dll~~~~~ 136 (138)
T 2p9m_A 116 DK---NNKLVGIISDGDIIRTISK 136 (138)
T ss_dssp CT---TSBEEEEEEHHHHHHHHHH
T ss_pred CC---CCeEEEEEEHHHHHHHHHh
Confidence 97 7899999999999987654
No 19
>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}
Probab=99.67 E-value=1.2e-16 Score=148.88 Aligned_cols=124 Identities=12% Similarity=0.063 Sum_probs=107.9
Q ss_pred ccceeccccccceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCCCCCcc
Q 003801 595 RQLTVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNPTVNDA 674 (794)
Q Consensus 595 ~~l~v~diM~~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~~~~~~ 674 (794)
.+++++|+|.+++.++++++++.++++.|++++++.+||+|+ ++++|+|+.+|+.+.+.+..
T Consensus 3 ~s~~v~~~m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~------~~~~Givt~~dl~~~~~~~~------------ 64 (128)
T 3gby_A 3 ASVTFSYLAETDYPVFTLGGSTADAARRLAASGCACAPVLDG------ERYLGMVHLSRLLEGRKGWP------------ 64 (128)
T ss_dssp TTCBGGGGCBCCSCCEETTSBHHHHHHHHHHHTCSEEEEEET------TEEEEEEEHHHHHTTCSSSC------------
T ss_pred cceEHHHhhcCCcceECCCCCHHHHHHHHHHCCCcEEEEEEC------CEEEEEEEHHHHHHHHhhCC------------
Confidence 368999999999999999999999999999999999999987 69999999999965332110
Q ss_pred cccchhhhhhccCCCCCCCccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCcE
Q 003801 675 FSQFSAVDFAKRGSGNGDKIEDIELSEEEMEMYVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPV 754 (794)
Q Consensus 675 ~~~~~~~d~~~~~~~~~~~i~di~~~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~v 754 (794)
.....++++|++++.++.+++++.+++++|.+.+.+++||+|+ +|++
T Consensus 65 ------------------------------~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~---~g~~ 111 (128)
T 3gby_A 65 ------------------------------TVKEKLGEELLETVRSYRPGEQLFDNLISVAAAKCSVVPLADE---DGRY 111 (128)
T ss_dssp ------------------------------CTTCBCCGGGCBCCCCBCTTSBGGGSHHHHHHCSSSEEEEECT---TCBE
T ss_pred ------------------------------cccCcHHHHccCCCcEECCCCCHHHHHHHHHhCCCcEEEEECC---CCCE
Confidence 0013467889999999999999999999999999999999997 8999
Q ss_pred EEEEecccccHHHHH
Q 003801 755 MGILTRHDFMPEHIL 769 (794)
Q Consensus 755 vGIITr~Dll~~~~~ 769 (794)
+|+||++|+++.+.+
T Consensus 112 ~Giit~~dll~~l~~ 126 (128)
T 3gby_A 112 EGVVSRKRILGFLAE 126 (128)
T ss_dssp EEEEEHHHHHHHHHT
T ss_pred EEEEEHHHHHHHHHh
Confidence 999999999987654
No 20
>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1
Probab=99.66 E-value=3.1e-16 Score=147.61 Aligned_cols=128 Identities=13% Similarity=0.186 Sum_probs=110.2
Q ss_pred cccceeccccccceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHH-HHHhccCCCCCCCCCC
Q 003801 594 MRQLTVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLIT-LLKKKAFLPTPNPTVN 672 (794)
Q Consensus 594 l~~l~v~diM~~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~-lL~~~~~~~~~~~~~~ 672 (794)
+..++++|+|+++++++++++++.++.+.|.+++++.+||+|++ ++++|+|+.+|+++ .+.+..
T Consensus 4 l~~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~-----~~~~Givt~~dl~~~~~~~~~---------- 68 (138)
T 2yzi_A 4 DMKAPIKVYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVINDD-----GNVVGFFTKSDIIRRVIVPGL---------- 68 (138)
T ss_dssp CTTSBGGGTCBCCCCEECTTSBHHHHHHHHHHHTCSEEEEECTT-----SCEEEEEEHHHHHHHTTTTCC----------
T ss_pred hhhhhHHHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCC-----CcEEEEEeHHHHHHHHHhcCC----------
Confidence 56789999999999999999999999999999999999999976 89999999999963 222110
Q ss_pred cccccchhhhhhccCCCCCCCccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCC
Q 003801 673 DAFSQFSAVDFAKRGSGNGDKIEDIELSEEEMEMYVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGS 752 (794)
Q Consensus 673 ~~~~~~~~~d~~~~~~~~~~~i~di~~~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g 752 (794)
.....++++|++++.++++++++.++.++|.+.+.+++ |+|+ +|
T Consensus 69 --------------------------------~~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~l-Vvd~---~g 112 (138)
T 2yzi_A 69 --------------------------------PYDIPVERIMTRNLITANVNTPLGEVLRKMAEHRIKHI-LIEE---EG 112 (138)
T ss_dssp --------------------------------CTTSBGGGTCBCSCCEEETTSBHHHHHHHHHHHTCSEE-EEEE---TT
T ss_pred --------------------------------cccCCHHHHhhCCCeEECCCCcHHHHHHHHHhcCCCEE-EECC---CC
Confidence 01234678899999999999999999999999999999 9997 78
Q ss_pred cEEEEEecccccHHHHHhcC
Q 003801 753 PVMGILTRHDFMPEHILALN 772 (794)
Q Consensus 753 ~vvGIITr~Dll~~~~~~~~ 772 (794)
+++|+||++|+++....+..
T Consensus 113 ~~~Giit~~dil~~~~~~~~ 132 (138)
T 2yzi_A 113 KIVGIFTLSDLLEASRRRLE 132 (138)
T ss_dssp EEEEEEEHHHHHHHHHCCSC
T ss_pred CEEEEEEHHHHHHHHHHHHH
Confidence 99999999999998765443
No 21
>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}
Probab=99.66 E-value=2.4e-16 Score=152.57 Aligned_cols=128 Identities=15% Similarity=0.204 Sum_probs=107.3
Q ss_pred eecccccc--ceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCCCCCccc
Q 003801 598 TVGDVVTA--PLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNPTVNDAF 675 (794)
Q Consensus 598 ~v~diM~~--~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~~~~~~~ 675 (794)
+++++|++ +++++++++++.+++++|.+++++++||+|++ ++++|+|+.+|++..+......
T Consensus 16 ~~~~iM~P~~~v~~v~~~~t~~~a~~~m~~~~~s~~pVvd~~-----~~lvGiit~~Di~~~~~~~~~~----------- 79 (156)
T 3k6e_A 16 QEETFLTPAKNLAVLIDTHNADHATLLLSQMTYTRVPVVTDE-----KQFVGTIGLRDIMAYQMEHDLS----------- 79 (156)
T ss_dssp TGGGGEEETTSSCCEETTSBHHHHHHHHTTSSSSEEEEECC------CBEEEEEEHHHHHHHHHHHTCC-----------
T ss_pred cHHHhCcchhHeEEECCcCCHHHHHHHHHHcCCcEEEEEcCC-----CcEEEEEEecchhhhhhhcccc-----------
Confidence 67899986 79999999999999999999999999999987 8999999999998776542210
Q ss_pred ccchhhhhhccCCCCCCCccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCcEE
Q 003801 676 SQFSAVDFAKRGSGNGDKIEDIELSEEEMEMYVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVM 755 (794)
Q Consensus 676 ~~~~~~d~~~~~~~~~~~i~di~~~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~vv 755 (794)
.+.....++.++|+++++++++++++.++.++|.+.+ .+||||+ +|+++
T Consensus 80 --------------------------~~~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~--~lpVVd~---~g~l~ 128 (156)
T 3k6e_A 80 --------------------------QEIMADTDIVHMTKTDVAVVSPDFTITEVLHKLVDES--FLPVVDA---EGIFQ 128 (156)
T ss_dssp --------------------------HHHHTTSBGGGTCBCSCCCBCTTCCHHHHHHHTTTSS--EEEEECT---TSBEE
T ss_pred --------------------------cccccccCHHHhhcCCceecccccHHHHHHHHHHHcC--CeEEEec---CCEEE
Confidence 0001134578899999999999999999999998765 5999998 89999
Q ss_pred EEEecccccHHHHHhcC
Q 003801 756 GILTRHDFMPEHILALN 772 (794)
Q Consensus 756 GIITr~Dll~~~~~~~~ 772 (794)
||||++|+++++....+
T Consensus 129 GiiT~~Dil~~~~~~~~ 145 (156)
T 3k6e_A 129 GIITRKSILKAVNALLH 145 (156)
T ss_dssp EEEEHHHHHHHHHHHSC
T ss_pred EEEEHHHHHHHHHHHhc
Confidence 99999999998866543
No 22
>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*
Probab=99.66 E-value=1.9e-16 Score=151.49 Aligned_cols=119 Identities=12% Similarity=0.154 Sum_probs=104.7
Q ss_pred ceecccccc--ceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCCCCCcc
Q 003801 597 LTVGDVVTA--PLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNPTVNDA 674 (794)
Q Consensus 597 l~v~diM~~--~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~~~~~~ 674 (794)
++++|+|++ +++++++++++.++++.|.+++++.+||+|++ ++++|+|+++|+...+.+...
T Consensus 28 ~~v~dim~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~-----~~~~Givt~~dl~~~~~~~~~----------- 91 (149)
T 3k2v_A 28 LRVNDIMHTGDEIPHVGLQATLRDALLEITRKNLGMTAICDDD-----MNIIGIFTDGDLRRVFDTGVD----------- 91 (149)
T ss_dssp SBGGGTSBCGGGSCEECTTCBHHHHHHHHHHHTSSEEEEECTT-----CBEEEEEEHHHHHHHHCSSSC-----------
T ss_pred cCHHHHhcCCCCCeEECCCCcHHHHHHHHHhCCCcEEEEECCC-----CcEEEEecHHHHHHHHhcCCC-----------
Confidence 599999999 99999999999999999999999999999987 899999999999876643110
Q ss_pred cccchhhhhhccCCCCCCCccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCcE
Q 003801 675 FSQFSAVDFAKRGSGNGDKIEDIELSEEEMEMYVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPV 754 (794)
Q Consensus 675 ~~~~~~~d~~~~~~~~~~~i~di~~~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~v 754 (794)
.....++++|++++.++.+++++.+++++|.+.+.+++||+|+ + ++
T Consensus 92 ------------------------------~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~-~~ 137 (149)
T 3k2v_A 92 ------------------------------MRDASIADVMTRGGIRIRPGTLAVDALNLMQSRHITCVLVADG---D-HL 137 (149)
T ss_dssp ------------------------------CTTCBHHHHSEESCCEECTTCBHHHHHHHHHHHTCSEEEEEET---T-EE
T ss_pred ------------------------------cccCcHHHHcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEecC---C-EE
Confidence 0023467788899999999999999999999999999999996 4 99
Q ss_pred EEEEecccccH
Q 003801 755 MGILTRHDFMP 765 (794)
Q Consensus 755 vGIITr~Dll~ 765 (794)
+|+||++|+++
T Consensus 138 ~Giit~~dil~ 148 (149)
T 3k2v_A 138 LGVVHMHDLLR 148 (149)
T ss_dssp EEEEEHHHHTC
T ss_pred EEEEEHHHhhc
Confidence 99999999975
No 23
>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*
Probab=99.66 E-value=5.1e-16 Score=150.31 Aligned_cols=132 Identities=15% Similarity=0.153 Sum_probs=112.1
Q ss_pred cccccceeccccccceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCCCC
Q 003801 592 PYMRQLTVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNPTV 671 (794)
Q Consensus 592 ~~l~~l~v~diM~~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~~~ 671 (794)
..+..++|+|+|+++ +++++++++.++++.|.+++++.+||+|++ ++++|+|+.+|+...+.....
T Consensus 12 ~~l~~~~v~~im~~~-~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~-----~~~~Givt~~dl~~~~~~~~~-------- 77 (159)
T 3fv6_A 12 DKLKKLQVKDFQSIP-VVIHENVSVYDAICTMFLEDVGTLFVVDRD-----AVLVGVLSRKDLLRASIGQQE-------- 77 (159)
T ss_dssp HHHTTCBGGGSCBCC-CEEETTSBHHHHHHHHHHHTCSEEEEECTT-----SCEEEEEEHHHHHHHHTSCSC--------
T ss_pred HHHhhCCHHHHcCCC-EEECCCCcHHHHHHHHHHCCCCEEEEEcCC-----CcEEEEEeHHHHHHHhhccCc--------
Confidence 346788999999985 499999999999999999999999999976 899999999999876532110
Q ss_pred CcccccchhhhhhccCCCCCCCccccccchhhhhccccccccccc--CCceecCCCCHHHHHHHHHHcCCCEEEEeecCC
Q 003801 672 NDAFSQFSAVDFAKRGSGNGDKIEDIELSEEEMEMYVDLHPFANA--SPYTVVETMSLAKALILFREVGLRHLLVIPKIS 749 (794)
Q Consensus 672 ~~~~~~~~~~d~~~~~~~~~~~i~di~~~~~~~~~~idl~~im~~--~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~ 749 (794)
.....++++|++ +++++.+++++.+++++|.+.+.+++||+|+
T Consensus 78 ---------------------------------~~~~~v~~~m~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-- 122 (159)
T 3fv6_A 78 ---------------------------------LTSVPVHIIMTRMPNITVCRREDYVMDIAKHLIEKQIDALPVIKD-- 122 (159)
T ss_dssp ---------------------------------TTTCBGGGTSEETTSCCCBCTTSBHHHHHHHHHHHTCSEEEEEEE--
T ss_pred ---------------------------------ccCcCHHHHHcCCCCcEEECCCCCHHHHHHHHHHcCCcEEEEEeC--
Confidence 002346788888 8899999999999999999999999999997
Q ss_pred CCC---cEEEEEecccccHHHHHhcCc
Q 003801 750 NGS---PVMGILTRHDFMPEHILALNP 773 (794)
Q Consensus 750 ~~g---~vvGIITr~Dll~~~~~~~~~ 773 (794)
+| +++|+||++|+++++.+-...
T Consensus 123 -~g~~~~~vGiit~~dil~~l~~~~~~ 148 (159)
T 3fv6_A 123 -TDKGFEVIGRVTKTNMTKILVSLSEN 148 (159)
T ss_dssp -CSSSEEEEEEEEHHHHHHHHHHHHTT
T ss_pred -CCcceeEEEEEEHHHHHHHHHHHhhc
Confidence 66 999999999999988764433
No 24
>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}
Probab=99.65 E-value=4.5e-16 Score=151.67 Aligned_cols=135 Identities=11% Similarity=0.124 Sum_probs=114.6
Q ss_pred cccccccccceecccccc---ceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCC
Q 003801 588 THVEPYMRQLTVGDVVTA---PLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFL 664 (794)
Q Consensus 588 ~~~~~~l~~l~v~diM~~---~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~ 664 (794)
......+..++|+|+|++ +++++++++++.++++.|.+++++.+||+|++ ++++|+|+.+|+.+.+.....
T Consensus 15 ~~~~~~l~~~~v~dim~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~-----~~~~Givt~~dl~~~~~~~~~- 88 (165)
T 3fhm_A 15 ENLYFQGMATFVKDLLDRKGRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDAD-----GVVLGIFTERDLVKAVAGQGA- 88 (165)
T ss_dssp -CCCCSSSSCBHHHHHHHHCSCCCEECTTSBHHHHHHHHHHHTCSEEEEECTT-----SCEEEEEEHHHHHHHHHHHGG-
T ss_pred chhhHhhhhcCHHHHhccCCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcCC-----CeEEEEEEHHHHHHHHHhcCC-
Confidence 344556889999999996 69999999999999999999999999999987 899999999999877654210
Q ss_pred CCCCCCCCcccccchhhhhhccCCCCCCCccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCCEEEE
Q 003801 665 PTPNPTVNDAFSQFSAVDFAKRGSGNGDKIEDIELSEEEMEMYVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLV 744 (794)
Q Consensus 665 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~di~~~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpV 744 (794)
......++++|++++.++.+++++.+++++|.+.+.+++||
T Consensus 89 ---------------------------------------~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpV 129 (165)
T 3fhm_A 89 ---------------------------------------ASLQQSVSVAMTKNVVRCQHNSTTDQLMEIMTGGRFRHVPV 129 (165)
T ss_dssp ---------------------------------------GGGTSBGGGTSBSSCCCBCTTCBHHHHHHHHHHHTCSEEEE
T ss_pred ---------------------------------------ccccCCHHHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEE
Confidence 00124577889999999999999999999999999999999
Q ss_pred eecCCCCCcEEEEEecccccHHHHHhc
Q 003801 745 IPKISNGSPVMGILTRHDFMPEHILAL 771 (794)
Q Consensus 745 Vd~~~~~g~vvGIITr~Dll~~~~~~~ 771 (794)
+|+ |+++|+||++|+++....+.
T Consensus 130 vd~----g~~~Giit~~dil~~~~~~~ 152 (165)
T 3fhm_A 130 EEN----GRLAGIISIGDVVKARIGEI 152 (165)
T ss_dssp EET----TEEEEEEEHHHHHHHTTCC-
T ss_pred EEC----CEEEEEEEHHHHHHHHHHHH
Confidence 984 89999999999998776543
No 25
>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}
Probab=99.64 E-value=2.1e-16 Score=150.86 Aligned_cols=140 Identities=24% Similarity=0.307 Sum_probs=109.3
Q ss_pred ccceecccccc--ceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCCCCC
Q 003801 595 RQLTVGDVVTA--PLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNPTVN 672 (794)
Q Consensus 595 ~~l~v~diM~~--~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~~~~ 672 (794)
+.++++|+|++ +++++++++++.++++.|.+++++.+||+|++ ++++|+|+++|+...+.....
T Consensus 3 ~~~~v~~im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~-----~~~~G~vt~~dl~~~~~~~~~--------- 68 (152)
T 4gqw_A 3 GVYTVGEFMTKKEDLHVVKPTTTVDEALELLVENRITGFPVIDED-----WKLVGLVSDYDLLALDSGDST--------- 68 (152)
T ss_dssp CCSBGGGTSEESTTCCCBCTTSBHHHHHHHHHHTTCSEEEEECTT-----CBEEEEEEHHHHTTCC----C---------
T ss_pred ceEEhhhccCCCCCCeEECCCCcHHHHHHHHHHcCCceEEEEeCC-----CeEEEEEEHHHHHHhhcccCc---------
Confidence 46899999998 89999999999999999999999999999987 899999999999543221000
Q ss_pred cccccchhhhhhccCCCCCCCccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCC
Q 003801 673 DAFSQFSAVDFAKRGSGNGDKIEDIELSEEEMEMYVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGS 752 (794)
Q Consensus 673 ~~~~~~~~~d~~~~~~~~~~~i~di~~~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g 752 (794)
.. ...++.... .......+.++|+++++++++++++.+++++|.+.+.+++||+|+ +|
T Consensus 69 --~~--~~~~~~~~~---------------~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~---~g 126 (152)
T 4gqw_A 69 --WK--TFNAVQKLL---------------SKTNGKLVGDLMTPAPLVVEEKTNLEDAAKILLETKYRRLPVVDS---DG 126 (152)
T ss_dssp --CH--HHHHHHTC--------------------CCBHHHHSEESCCCEESSSBHHHHHHHHHHSSCCEEEEECT---TS
T ss_pred --cc--chHHHHHHH---------------HHhccccHHHhcCCCceEECCCCcHHHHHHHHHHCCCCEEEEECC---CC
Confidence 00 000000000 001124578889999999999999999999999999999999997 79
Q ss_pred cEEEEEecccccHHHHHh
Q 003801 753 PVMGILTRHDFMPEHILA 770 (794)
Q Consensus 753 ~vvGIITr~Dll~~~~~~ 770 (794)
+++|+||++|+++...+.
T Consensus 127 ~~~Giit~~dil~~~~~~ 144 (152)
T 4gqw_A 127 KLVGIITRGNVVRAALQI 144 (152)
T ss_dssp BEEEEEEHHHHHHHHHC-
T ss_pred cEEEEEEHHHHHHHHHhc
Confidence 999999999999987653
No 26
>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1
Probab=99.64 E-value=7.5e-16 Score=142.17 Aligned_cols=122 Identities=12% Similarity=0.181 Sum_probs=105.1
Q ss_pred ceeccccccceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCCCCCcccc
Q 003801 597 LTVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNPTVNDAFS 676 (794)
Q Consensus 597 l~v~diM~~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~~~~~~~~ 676 (794)
++++|+|++++.++++++++.++.+.|.+++++.+||+| + ++++|+|+.+|+...+.+....
T Consensus 1 m~v~~~m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~-----~~~~G~it~~dl~~~~~~~~~~------------ 62 (125)
T 1pbj_A 1 MRVEDVMVTDVDTIDITASLEDVLRNYVENAKGSSVVVK-E-----GVRVGIVTTWDVLEAIAEGDDL------------ 62 (125)
T ss_dssp -CHHHHCBCSCCEEETTCBHHHHHHHHHHHCCCEEEEEE-T-----TEEEEEEEHHHHHHHHHHTCCT------------
T ss_pred CCHHHhcCCCceEECCCCcHHHHHHHHHHcCCCEEEEEe-C-----CeeEEEEeHHHHHHHHhcCCcc------------
Confidence 578999999999999999999999999999999999999 6 8999999999998766532100
Q ss_pred cchhhhhhccCCCCCCCccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCcEEE
Q 003801 677 QFSAVDFAKRGSGNGDKIEDIELSEEEMEMYVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMG 756 (794)
Q Consensus 677 ~~~~~d~~~~~~~~~~~i~di~~~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~vvG 756 (794)
....++++|++++.++++++++.++.++|.+.+.+++||+|+ |+++|
T Consensus 63 -----------------------------~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~----~~~~G 109 (125)
T 1pbj_A 63 -----------------------------AEVKVWEVMERDLVTISPRATIKEAAEKMVKNVVWRLLVEED----DEIIG 109 (125)
T ss_dssp -----------------------------TTSBHHHHCBCGGGEECTTSCHHHHHHHHHHHTCSEEEEEET----TEEEE
T ss_pred -----------------------------cccCHHHHcCCCCeEECCCCCHHHHHHHHHhcCCcEEEEEEC----CEEEE
Confidence 013467788889999999999999999999999999999984 78999
Q ss_pred EEecccccHHHHH
Q 003801 757 ILTRHDFMPEHIL 769 (794)
Q Consensus 757 IITr~Dll~~~~~ 769 (794)
+||++|+++....
T Consensus 110 vit~~dl~~~l~~ 122 (125)
T 1pbj_A 110 VISATDILRAKMA 122 (125)
T ss_dssp EEEHHHHHHHHC-
T ss_pred EEEHHHHHHHHHh
Confidence 9999999987644
No 27
>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}
Probab=99.64 E-value=2e-16 Score=152.85 Aligned_cols=120 Identities=22% Similarity=0.301 Sum_probs=103.2
Q ss_pred cccceecccccc--ceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCCCC
Q 003801 594 MRQLTVGDVVTA--PLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNPTV 671 (794)
Q Consensus 594 l~~l~v~diM~~--~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~~~ 671 (794)
++.++|+|+|++ +++++++++++.++++.|++++++.+||+|++ .++++|+|+.+|++..+.+.
T Consensus 35 l~~~~v~diM~~~~~~~~v~~~~~i~~a~~~m~~~~~~~~pVvd~~----~~~lvGivt~~dl~~~~~~~---------- 100 (156)
T 3oi8_A 35 FSDLEVRDAMITRSRMNVLKENDSIERITAYVIDTAHSRFPVIGED----KDEVLGILHAKDLLKYMFNP---------- 100 (156)
T ss_dssp HTTCBGGGTCEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSS----TTCEEEEEEGGGGGGGSSCG----------
T ss_pred cCCCCHhheeeeHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCC----CCcEEEEEEHHHHHHHHHcC----------
Confidence 567899999997 79999999999999999999999999999975 14899999999995432110
Q ss_pred CcccccchhhhhhccCCCCCCCccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCC
Q 003801 672 NDAFSQFSAVDFAKRGSGNGDKIEDIELSEEEMEMYVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNG 751 (794)
Q Consensus 672 ~~~~~~~~~~d~~~~~~~~~~~i~di~~~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~ 751 (794)
....++++|++ ++++++++++.+++++|.+.+.+++||+|+ +
T Consensus 101 ----------------------------------~~~~v~~im~~-~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~---~ 142 (156)
T 3oi8_A 101 ----------------------------------EQFHLKSILRP-AVFVPEGKSLTALLKEFREQRNHMAIVIDE---Y 142 (156)
T ss_dssp ----------------------------------GGCCHHHHCBC-CCEEETTSBHHHHHHHHHHTTCCEEEEECT---T
T ss_pred ----------------------------------CcccHHHHcCC-CEEECCCCCHHHHHHHHHhcCCeEEEEECC---C
Confidence 02346778865 889999999999999999999999999998 7
Q ss_pred CcEEEEEecccccH
Q 003801 752 SPVMGILTRHDFMP 765 (794)
Q Consensus 752 g~vvGIITr~Dll~ 765 (794)
|+++||||++|+++
T Consensus 143 g~~~Givt~~Dile 156 (156)
T 3oi8_A 143 GGTSGLVTFEDIIE 156 (156)
T ss_dssp SSEEEEEEHHHHCC
T ss_pred CCEEEEEEHHHhcC
Confidence 99999999999863
No 28
>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0
Probab=99.63 E-value=6.2e-16 Score=147.87 Aligned_cols=136 Identities=18% Similarity=0.120 Sum_probs=112.5
Q ss_pred ccccccceecccccc--ceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCCCCCC
Q 003801 591 EPYMRQLTVGDVVTA--PLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPN 668 (794)
Q Consensus 591 ~~~l~~l~v~diM~~--~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~ 668 (794)
...+..++|+|+|++ +++++++++++.++++.|.+++++.+||+|++ ++++|+|+++|+...+.....
T Consensus 9 ~~~l~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVvd~~-----~~~~Givt~~dl~~~~~~~~~----- 78 (150)
T 3lqn_A 9 KDEFQQIFVKDLMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDPM-----YKLHGLISTAMILDGILGLER----- 78 (150)
T ss_dssp HHHHHHCBHHHHSEEGGGSCCBCTTSBHHHHHHHHHHHTCSEEEEECTT-----CBEEEEEEHHHHHHHTBCSSS-----
T ss_pred HHhhhcCChhhcccCCCceEEECCCCcHHHHHHHHHHcCCcEEEEECCC-----CCEEEEEEHHHHHHHHHhhcc-----
Confidence 345778999999994 69999999999999999999999999999987 899999999999876532110
Q ss_pred CCCCcccccchhhhhhccCCCCCCCccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecC
Q 003801 669 PTVNDAFSQFSAVDFAKRGSGNGDKIEDIELSEEEMEMYVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKI 748 (794)
Q Consensus 669 ~~~~~~~~~~~~~d~~~~~~~~~~~i~di~~~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~ 748 (794)
.. .+......+.++|++++.++.+++++.+++++|.+.+. +||+|+
T Consensus 79 ---------~~----------------------~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~--l~Vvd~- 124 (150)
T 3lqn_A 79 ---------IE----------------------FERLEEMKVEQVMKQDIPVLKLEDSFAKALEMTIDHPF--ICAVNE- 124 (150)
T ss_dssp ---------BC----------------------GGGGGGCBGGGTCBSSCCEEETTCBHHHHHHHHHHCSE--EEEECT-
T ss_pred ---------cc----------------------hhHHhcCCHHHHhcCCCceeCCCCCHHHHHHHHHhCCE--EEEECC-
Confidence 00 00011345788999999999999999999999999987 999997
Q ss_pred CCCCcEEEEEecccccHHHHHhcC
Q 003801 749 SNGSPVMGILTRHDFMPEHILALN 772 (794)
Q Consensus 749 ~~~g~vvGIITr~Dll~~~~~~~~ 772 (794)
+|+++|+||++|+++.+.+...
T Consensus 125 --~g~~~Giit~~dil~~l~~~~~ 146 (150)
T 3lqn_A 125 --DGYFEGILTRRAILKLLNKKVR 146 (150)
T ss_dssp --TCBEEEEEEHHHHHHHHHHHC-
T ss_pred --CCcEEEEEEHHHHHHHHHHHhH
Confidence 7999999999999998776543
No 29
>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1
Probab=99.63 E-value=1.1e-15 Score=147.51 Aligned_cols=142 Identities=14% Similarity=0.131 Sum_probs=112.5
Q ss_pred cccccceeccccccceeEEeccccHHHHHHHHhcCCCCe-eEEeeCCCCCCCCeEEEEEeHHHHHHHHHhcc--CCCCCC
Q 003801 592 PYMRQLTVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNG-FPVIDENPLSETPILYGLILRAHLITLLKKKA--FLPTPN 668 (794)
Q Consensus 592 ~~l~~l~v~diM~~~vv~l~~~~sv~~a~~~L~~~~~~~-fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~--~~~~~~ 668 (794)
.....++|+|+|+++++++++++++.++++.|.+++++. +||+|+ ++++|+|+++|++..+.... +....
T Consensus 11 ~~~~~~~v~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~~Vvd~------~~~vGivt~~dl~~~~~~~~~~~~~~~- 83 (157)
T 1o50_A 11 HHMKVKDVCKLISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARD------NKLVGMIPVMHLLKVSGFHFFGFIPKE- 83 (157)
T ss_dssp TTCBHHHHTTSSCCCCEEECTTCBHHHHHHHHHHSTTCCEEEEEET------TEEEEEEEHHHHHHHHHHHHHCCCC---
T ss_pred hhhccccHhhcccCCCceECCCCCHHHHHHHHHhCCCCccEEEEEC------CEEEEEEEHHHHHHHHhhhHHhhhccH-
Confidence 446789999999999999999999999999999999999 999997 48999999999987654210 00000
Q ss_pred CCCCcccccchhhhhhccCCCCCCCccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecC
Q 003801 669 PTVNDAFSQFSAVDFAKRGSGNGDKIEDIELSEEEMEMYVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKI 748 (794)
Q Consensus 669 ~~~~~~~~~~~~~d~~~~~~~~~~~i~di~~~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~ 748 (794)
..+.+.. .......++++|++ +.++++++++.++.++|.+.+.+++||+|+
T Consensus 84 ------------~~~~~~~---------------~~~~~~~v~~im~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~- 134 (157)
T 1o50_A 84 ------------ELIRSSM---------------KRLIAKNASEIMLD-PVYVHMDTPLEEALKLMIDNNIQEMPVVDE- 134 (157)
T ss_dssp -----------------CC---------------CCCSSCBHHHHCBC-CCCBCTTSBHHHHHHHHHHHTCSEEEEECT-
T ss_pred ------------HHHHHHH---------------HHHcCCcHHHHcCC-CeEECCCCCHHHHHHHHHHCCCcEEEEEcC-
Confidence 0000000 00012457789999 999999999999999999999999999997
Q ss_pred CCCCcEEEEEecccccHHHHHhc
Q 003801 749 SNGSPVMGILTRHDFMPEHILAL 771 (794)
Q Consensus 749 ~~~g~vvGIITr~Dll~~~~~~~ 771 (794)
+|+++|+||++|+++...++.
T Consensus 135 --~g~~vGiit~~dll~~l~~~~ 155 (157)
T 1o50_A 135 --KGEIVGDLNSLEILLALWKGR 155 (157)
T ss_dssp --TSCEEEEEEHHHHHHHHHHSC
T ss_pred --CCEEEEEEEHHHHHHHHHHhh
Confidence 789999999999999876643
No 30
>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}
Probab=99.63 E-value=9.9e-16 Score=150.89 Aligned_cols=128 Identities=15% Similarity=0.174 Sum_probs=109.2
Q ss_pred cccceecccccc--ceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCCCC
Q 003801 594 MRQLTVGDVVTA--PLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNPTV 671 (794)
Q Consensus 594 l~~l~v~diM~~--~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~~~ 671 (794)
+..++|+|+|++ +++++++++++.++++.|++++++.+||+|++ .++++|+|+.+|++..+.+..
T Consensus 33 l~~~~v~diM~~~~~v~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~----~~~lvGivt~~Dl~~~~~~~~--------- 99 (173)
T 3ocm_A 33 LAERSIRSIMTPRTDVSWVNIDDDAATIRQQLTAAPHSFFPVCRGS----LDEVVGIGRAKDLVADLITEG--------- 99 (173)
T ss_dssp HTTSCSTTTSEEGGGCCCEETTSCHHHHHHHHHHSSCSEEEEESSS----TTSEEEEEEHHHHHHHHHHHS---------
T ss_pred cCCCCHHHhCCcHHHeEEEeCCCCHHHHHHHHHhCCCCEEEEEeCC----CCCEEEEEEHHHHHHHHhcCC---------
Confidence 567899999974 68999999999999999999999999999863 168999999999987654311
Q ss_pred CcccccchhhhhhccCCCCCCCccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCC
Q 003801 672 NDAFSQFSAVDFAKRGSGNGDKIEDIELSEEEMEMYVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNG 751 (794)
Q Consensus 672 ~~~~~~~~~~d~~~~~~~~~~~i~di~~~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~ 751 (794)
..++. |.+++++|++++++.+++++|.+.+.+++||+|+ +
T Consensus 100 -----------------------------------~~~v~--~~~~~~~v~~~~~l~~al~~m~~~~~~~~~Vvde---~ 139 (173)
T 3ocm_A 100 -----------------------------------RVRRN--RLRDPIIVHESIGILRLMDTLKRSRGQLVLVADE---F 139 (173)
T ss_dssp -----------------------------------SCCGG--GSBCCCEECGGGCHHHHHHHHHHSTTCCEEEECT---T
T ss_pred -----------------------------------cchhH--hcCCCeEECCCCcHHHHHHHHHHcCCeEEEEEeC---C
Confidence 12344 4467889999999999999999999999999997 7
Q ss_pred CcEEEEEecccccHHHHHhcCcc
Q 003801 752 SPVMGILTRHDFMPEHILALNPL 774 (794)
Q Consensus 752 g~vvGIITr~Dll~~~~~~~~~~ 774 (794)
|+++||||++|+++....+...+
T Consensus 140 g~lvGiIT~~Dil~~l~~~i~de 162 (173)
T 3ocm_A 140 GAIEGLVTPIDVFEAIAGEFPDE 162 (173)
T ss_dssp CCEEEEECHHHHHHHHHCCCCCT
T ss_pred CCEEEEEeHHHHHHHHhCcCCCc
Confidence 99999999999999888765443
No 31
>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}
Probab=99.62 E-value=4.6e-16 Score=153.17 Aligned_cols=154 Identities=21% Similarity=0.279 Sum_probs=110.4
Q ss_pred cceecccccc--ceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCCCCCc
Q 003801 596 QLTVGDVVTA--PLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNPTVND 673 (794)
Q Consensus 596 ~l~v~diM~~--~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~~~~~ 673 (794)
.++|+|+|++ +++++++++++.++++.|.+++++.+||+|++ ++++|+|+++|+++.+........
T Consensus 3 ~~~v~dim~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~-----~~~~Givt~~dl~~~~~~~~~~~~------- 70 (180)
T 3sl7_A 3 GYTVGDFMTPRQNLHVVKPSTSVDDALELLVEKKVTGLPVIDDN-----WTLVGVVSDYDLLALDSISGRSQN------- 70 (180)
T ss_dssp CCBHHHHSEEGGGCCCBCTTSBHHHHHHHHHHHTCSEEEEECTT-----CBEEEEEEHHHHTCC----------------
T ss_pred ceeHHHhcCCCCCceeeCCCCcHHHHHHHHHHcCCCeEEEECCC-----CeEEEEEEHHHHHhhhhhccccCC-------
Confidence 4789999999 89999999999999999999999999999987 899999999999642211000000
Q ss_pred ccccchhhhhhccCCCCCCCccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCc
Q 003801 674 AFSQFSAVDFAKRGSGNGDKIEDIELSEEEMEMYVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSP 753 (794)
Q Consensus 674 ~~~~~~~~d~~~~~~~~~~~i~di~~~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~ 753 (794)
...+..........+.+..-. ........++++|+++++++++++++.+++++|.+.+.+++||+|+ +|+
T Consensus 71 ------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~g~ 140 (180)
T 3sl7_A 71 ------DTNLFPDVDSTWKTFNELQKL-ISKTYGKVVGDLMTPSPLVVRDSTNLEDAARLLLETKFRRLPVVDA---DGK 140 (180)
T ss_dssp ----------------CCCSHHHHHHH-HHTTTTCBHHHHSEESCCCEETTSBHHHHHHHHTTSTTCEEEEECT---TCB
T ss_pred ------cccccccccchhhhhHHHHHH-HhccccccHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCEEEEECC---CCe
Confidence 000000000000000000000 0001234578899999999999999999999999999999999997 799
Q ss_pred EEEEEecccccHHHHHhc
Q 003801 754 VMGILTRHDFMPEHILAL 771 (794)
Q Consensus 754 vvGIITr~Dll~~~~~~~ 771 (794)
++|+||++|++++.....
T Consensus 141 ~vGiit~~dil~~~~~~~ 158 (180)
T 3sl7_A 141 LIGILTRGNVVRAALQIK 158 (180)
T ss_dssp EEEEEEHHHHHHHHHHHH
T ss_pred EEEEEEHHHHHHHHHHHh
Confidence 999999999999876643
No 32
>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}
Probab=99.62 E-value=2.2e-15 Score=152.56 Aligned_cols=130 Identities=12% Similarity=0.122 Sum_probs=110.1
Q ss_pred cccceeccccccceeEEeccccHHHHHHHHhcC---CCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCCC
Q 003801 594 MRQLTVGDVVTAPLQLFHGIEKAGNVVHVLRTT---RHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNPT 670 (794)
Q Consensus 594 l~~l~v~diM~~~vv~l~~~~sv~~a~~~L~~~---~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~~ 670 (794)
....+|+++|+++++++++++++.++++.|++. +++.+||+|++ ++++|+|+.+|++. ..
T Consensus 51 ~~~~~v~~iM~~~~~~v~~~~tv~eal~~~~~~~~~~~~~~~Vvd~~-----~~lvGivt~~dll~---~~--------- 113 (205)
T 3kxr_A 51 YSENEIGRYTDHQMLVLSDKATVAQAQRFFRRIELDCNDNLFIVDEA-----DKYLGTVRRYDIFK---HE--------- 113 (205)
T ss_dssp SCTTCGGGGCBCCCCEEETTCBHHHHHHHHHHCCCTTCCEEEEECTT-----CBEEEEEEHHHHTT---SC---------
T ss_pred CCcchHHhhccCceEEECCCCcHHHHHHHHHhhCccCeeEEEEEcCC-----CeEEEEEEHHHHHh---CC---------
Confidence 346689999999999999999999999999986 78899999987 89999999999842 10
Q ss_pred CCcccccchhhhhhccCCCCCCCccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCC
Q 003801 671 VNDAFSQFSAVDFAKRGSGNGDKIEDIELSEEEMEMYVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISN 750 (794)
Q Consensus 671 ~~~~~~~~~~~d~~~~~~~~~~~i~di~~~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~ 750 (794)
....++++|++++++|++++++.++.++|++++++++||||+
T Consensus 114 -----------------------------------~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVD~--- 155 (205)
T 3kxr_A 114 -----------------------------------PHEPLISLLSEDSRALTANTTLLDAAEAIEHSREIELPVIDD--- 155 (205)
T ss_dssp -----------------------------------TTSBGGGGCCSSCCCEETTSCHHHHHHHHHTSSCSEEEEECT---
T ss_pred -----------------------------------CcchHHHHhcCCCeEECCCCCHHHHHHHHHhcCCCEEEEEcC---
Confidence 013467899999999999999999999999999999999998
Q ss_pred CCcEEEEEecccccHHHHHhcCcccccc
Q 003801 751 GSPVMGILTRHDFMPEHILALNPLLARS 778 (794)
Q Consensus 751 ~g~vvGIITr~Dll~~~~~~~~~~l~~~ 778 (794)
+|+++||||++|+++....+...+..+.
T Consensus 156 ~g~lvGiIT~~Dil~~i~~e~~ed~~~~ 183 (205)
T 3kxr_A 156 AGELIGRVTLRAATALVREHYEAQLMAT 183 (205)
T ss_dssp TSBEEEEEEHHHHHHHHHHHHC------
T ss_pred CCeEEEEEEHHHHHHHHHHHHHHHHHHh
Confidence 8999999999999999888777666543
No 33
>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1
Probab=99.61 E-value=1.4e-15 Score=147.47 Aligned_cols=133 Identities=17% Similarity=0.276 Sum_probs=110.0
Q ss_pred ccceeccccccceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCCCCCcc
Q 003801 595 RQLTVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNPTVNDA 674 (794)
Q Consensus 595 ~~l~v~diM~~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~~~~~~ 674 (794)
..++|+|+|+++++++++++++.++++.|.+++++.+||+|++ ++++|+|+++|++..+.........
T Consensus 3 ~~~~v~dim~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~-----~~lvGivt~~dl~~~~~~~~~~~~~------- 70 (160)
T 2o16_A 3 LMIKVEDMMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDAN-----KKLLGIVSQRDLLAAQESSLQRSAQ------- 70 (160)
T ss_dssp CCCBGGGTSEESCCCBCTTSBHHHHHHHHHHHTCSEEEEECTT-----CBEEEEEEHHHHHHHHHHHCC-----------
T ss_pred CcCcHHHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCC-----CcEEEEEeHHHHHHHHHHhhccccc-------
Confidence 4678999999999999999999999999999999999999976 8999999999998776542100000
Q ss_pred cccchhhhhhccCCCCCCCccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCcE
Q 003801 675 FSQFSAVDFAKRGSGNGDKIEDIELSEEEMEMYVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPV 754 (794)
Q Consensus 675 ~~~~~~~d~~~~~~~~~~~i~di~~~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~v 754 (794)
.........+.++|++++.++++++++.++.++|.+.+.+++||+|+ |++
T Consensus 71 --------------------------~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~----g~l 120 (160)
T 2o16_A 71 --------------------------GDSLAFETPLFEVMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVAK----DVL 120 (160)
T ss_dssp -------------------------------CCCBHHHHSCSCEEEBCTTSBHHHHHHHHHHTTCSCEEEEET----TEE
T ss_pred --------------------------ccchhcccCHHHHhcCCCeEECCCCCHHHHHHHHHHhCCCEEEEEEC----CEE
Confidence 00001134577889999999999999999999999999999999984 799
Q ss_pred EEEEecccccHHHHH
Q 003801 755 MGILTRHDFMPEHIL 769 (794)
Q Consensus 755 vGIITr~Dll~~~~~ 769 (794)
+|+||++|+++....
T Consensus 121 vGiit~~dil~~~~~ 135 (160)
T 2o16_A 121 VGIITDSDFVTIAIN 135 (160)
T ss_dssp EEEECHHHHHHHHHH
T ss_pred EEEEEHHHHHHHHHH
Confidence 999999999987665
No 34
>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A
Probab=99.61 E-value=6.3e-16 Score=144.56 Aligned_cols=125 Identities=18% Similarity=0.224 Sum_probs=104.7
Q ss_pred cccceeccccccceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHH-HHHhccCCCCCCCCCC
Q 003801 594 MRQLTVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLIT-LLKKKAFLPTPNPTVN 672 (794)
Q Consensus 594 l~~l~v~diM~~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~-lL~~~~~~~~~~~~~~ 672 (794)
++.++++|+|++++.++++++++.++++.|.+++++.+||+|++ ++++|+|+.+|++. .+.+...
T Consensus 5 ~~~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~-----~~~~Givt~~dl~~~~~~~~~~--------- 70 (133)
T 1y5h_A 5 FTMTTARDIMNAGVTCVGEHETLTAAAQYMREHDIGALPICGDD-----DRLHGMLTDRDIVIKGLAAGLD--------- 70 (133)
T ss_dssp ---CCHHHHSEETCCCEETTSBHHHHHHHHHHHTCSEEEEECGG-----GBEEEEEEHHHHHHTTGGGTCC---------
T ss_pred hhhcCHHHHhcCCceEeCCCCCHHHHHHHHHHhCCCeEEEECCC-----CeEEEEEeHHHHHHHHHhcCCC---------
Confidence 45679999999999999999999999999999999999999876 89999999999963 3322100
Q ss_pred cccccchhhhhhccCCCCCCCccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCC
Q 003801 673 DAFSQFSAVDFAKRGSGNGDKIEDIELSEEEMEMYVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGS 752 (794)
Q Consensus 673 ~~~~~~~~~d~~~~~~~~~~~i~di~~~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g 752 (794)
.....++++|++++.++++++++.++.++|.+.+.+++||+|+ |
T Consensus 71 --------------------------------~~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~----g 114 (133)
T 1y5h_A 71 --------------------------------PNTATAGELARDSIYYVDANASIQEMLNVMEEHQVRRVPVISE----H 114 (133)
T ss_dssp --------------------------------TTTSBHHHHHTTCCCCEETTCCHHHHHHHHHHHTCSEEEEEET----T
T ss_pred --------------------------------ccccCHHHHhcCCCEEECCCCCHHHHHHHHHHcCCCEEEEEEC----C
Confidence 0013467788889999999999999999999999999999994 7
Q ss_pred cEEEEEecccccHHHH
Q 003801 753 PVMGILTRHDFMPEHI 768 (794)
Q Consensus 753 ~vvGIITr~Dll~~~~ 768 (794)
+++|+||++|++++..
T Consensus 115 ~~~Giit~~dil~~l~ 130 (133)
T 1y5h_A 115 RLVGIVTEADIARHLP 130 (133)
T ss_dssp EEEEEEEHHHHHHTCC
T ss_pred EEEEEEEHHHHHHHHH
Confidence 8999999999987653
No 35
>2uv4_A 5'-AMP-activated protein kinase subunit gamma-1; transferase, CBS domain, lipid synthesis, fatty acid biosynthesis; HET: AMP; 1.33A {Homo sapiens} PDB: 2uv5_A* 2uv6_A* 2uv7_A*
Probab=99.61 E-value=2.4e-15 Score=144.38 Aligned_cols=128 Identities=16% Similarity=0.255 Sum_probs=107.6
Q ss_pred ccccccceeccccccceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCCC
Q 003801 591 EPYMRQLTVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNPT 670 (794)
Q Consensus 591 ~~~l~~l~v~diM~~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~~ 670 (794)
...+++++++|+ ++++++++++++.++++.|.+++++.+||+|++ ++++|+|+.+|+...+....+..
T Consensus 17 ~~~l~~~~v~~~--~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~-----~~~vGivt~~dl~~~~~~~~~~~----- 84 (152)
T 2uv4_A 17 SKSLEELQIGTY--ANIAMVRTTTPVYVALGIFVQHRVSALPVVDEK-----GRVVDIYSKFDVINLAAEKTYNN----- 84 (152)
T ss_dssp TSBHHHHTCSBC--SSCCCEETTCBHHHHHHHHHHHCCSEEEEECTT-----SBEEEEEEHHHHHHHHHCSSCCC-----
T ss_pred HhhHHHccCCcc--CCceEeCCCCcHHHHHHHHHHcCCceEeEECCC-----CcEEEEEeHHHHHHHhcchhhhh-----
Confidence 456788999998 788899999999999999999999999999986 89999999999987665321100
Q ss_pred CCcccccchhhhhhccCCCCCCCccccccchhhhhcccccccccc------cCCceecCCCCHHHHHHHHHHcCCCEEEE
Q 003801 671 VNDAFSQFSAVDFAKRGSGNGDKIEDIELSEEEMEMYVDLHPFAN------ASPYTVVETMSLAKALILFREVGLRHLLV 744 (794)
Q Consensus 671 ~~~~~~~~~~~d~~~~~~~~~~~i~di~~~~~~~~~~idl~~im~------~~p~tV~~~~sL~~a~~lf~~~glr~LpV 744 (794)
....+.++|+ +++.++.+++++.++.++|.+.+.+++||
T Consensus 85 -----------------------------------~~~~v~~~m~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpV 129 (152)
T 2uv4_A 85 -----------------------------------LDVSVTKALQHRSHYFEGVLKCYLHETLETIINRLVEAEVHRLVV 129 (152)
T ss_dssp -----------------------------------TTSBGGGGGGTCCHHHHTCSEECTTSBHHHHHHHHHHHTCSEEEE
T ss_pred -----------------------------------hcchHHHHHhhhhcccCCCeEECCCCcHHHHHHHHHHcCCeEEEE
Confidence 0112344554 78899999999999999999999999999
Q ss_pred eecCCCCCcEEEEEecccccHHHH
Q 003801 745 IPKISNGSPVMGILTRHDFMPEHI 768 (794)
Q Consensus 745 Vd~~~~~g~vvGIITr~Dll~~~~ 768 (794)
+|+ +|+++|+||++|+++...
T Consensus 130 vd~---~g~~vGiit~~dil~~l~ 150 (152)
T 2uv4_A 130 VDE---NDVVKGIVSLSDILQALV 150 (152)
T ss_dssp ECT---TSBEEEEEEHHHHHHHHC
T ss_pred ECC---CCeEEEEEEHHHHHHHHH
Confidence 997 789999999999998653
No 36
>3ctu_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.81A {Streptococcus pneumoniae TIGR4} PDB: 3k6e_A
Probab=99.61 E-value=2.7e-15 Score=144.45 Aligned_cols=132 Identities=14% Similarity=0.179 Sum_probs=110.1
Q ss_pred cccceeccccc--cceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCCCC
Q 003801 594 MRQLTVGDVVT--APLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNPTV 671 (794)
Q Consensus 594 l~~l~v~diM~--~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~~~ 671 (794)
+...+++|+|+ ++++++++++++.++++.|.+++++.+||+|++ ++++|+|+.+|+...+......
T Consensus 12 l~~~~v~dim~p~~~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~-----~~~~Giit~~dl~~~~~~~~~~------- 79 (156)
T 3ctu_A 12 FLLGQEETFLTPAKNLAVLIDTHNADHATLLLSQMTYTRVPVVTDE-----KQFVGTIGLRDIMAYQMEHDLS------- 79 (156)
T ss_dssp HHHTTGGGGEEEGGGCCCEETTSBHHHHHHHHTTCSSSEEEEECC------CBEEEEEEHHHHHHHHHHHTCC-------
T ss_pred HHHHHHHHHcCcccCceEECCCCCHHHHHHHHHHCCCceEeEECCC-----CEEEEEEcHHHHHHHHHhcccc-------
Confidence 44567899999 689999999999999999999999999999987 8999999999998876542210
Q ss_pred CcccccchhhhhhccCCCCCCCccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCC
Q 003801 672 NDAFSQFSAVDFAKRGSGNGDKIEDIELSEEEMEMYVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNG 751 (794)
Q Consensus 672 ~~~~~~~~~~d~~~~~~~~~~~i~di~~~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~ 751 (794)
.+......++++|++++.++.+++++.++.++|.+.+ ++||+|+ +
T Consensus 80 ------------------------------~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~--~lpVvd~---~ 124 (156)
T 3ctu_A 80 ------------------------------QEIMADTDIVHMTKTDVAVVSPDFTITEVLHKLVDES--FLPVVDA---E 124 (156)
T ss_dssp ------------------------------HHHHTTSBGGGGCBCSCCCBCSSCCHHHHHHHTTTSS--EEEEECT---T
T ss_pred ------------------------------ccccccCcHHHhccCCceeeCCCCcHHHHHHHHHHcC--eEEEEcC---C
Confidence 0000124578899999999999999999999999886 7999997 7
Q ss_pred CcEEEEEecccccHHHHHhcC
Q 003801 752 SPVMGILTRHDFMPEHILALN 772 (794)
Q Consensus 752 g~vvGIITr~Dll~~~~~~~~ 772 (794)
|+++|+||++|+++.+.....
T Consensus 125 g~~~Giit~~dil~~l~~~~~ 145 (156)
T 3ctu_A 125 GIFQGIITRKSILKAVNALLH 145 (156)
T ss_dssp SBEEEEEETTHHHHHHHHHSC
T ss_pred CeEEEEEEHHHHHHHHHHHHH
Confidence 999999999999998876543
No 37
>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A
Probab=99.61 E-value=2.4e-15 Score=142.24 Aligned_cols=128 Identities=18% Similarity=0.301 Sum_probs=105.2
Q ss_pred cccceecc---ccccceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCCC
Q 003801 594 MRQLTVGD---VVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNPT 670 (794)
Q Consensus 594 l~~l~v~d---iM~~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~~ 670 (794)
+.+.+++| +|.++++++++++++.++++.|.+++++.+||+|++ ++++|+|+.+|+...+.+..+..
T Consensus 5 ~~~~~v~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~-----~~~~Givt~~dl~~~~~~~~~~~----- 74 (144)
T 2nyc_A 5 FLKIPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDEN-----GYLINVYEAYDVLGLIKGGIYND----- 74 (144)
T ss_dssp GGGSBGGGSSCCBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECTT-----CBEEEEEEHHHHHHHHHTC---------
T ss_pred hhhcchhhcCCCCCCCceEECCCCcHHHHHHHHHHcCcceeeEEcCC-----CcEEEEEcHHHHHHHhccccccc-----
Confidence 34567788 888999999999999999999999999999999986 89999999999987664321000
Q ss_pred CCcccccchhhhhhccCCCCCCCccccccchhhhhccccccccccc------CCceecCCCCHHHHHHHHHHcCCCEEEE
Q 003801 671 VNDAFSQFSAVDFAKRGSGNGDKIEDIELSEEEMEMYVDLHPFANA------SPYTVVETMSLAKALILFREVGLRHLLV 744 (794)
Q Consensus 671 ~~~~~~~~~~~d~~~~~~~~~~~i~di~~~~~~~~~~idl~~im~~------~p~tV~~~~sL~~a~~lf~~~glr~LpV 744 (794)
....++++|++ ++.++.+++++.+++++|.+.+.+++||
T Consensus 75 -----------------------------------~~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~V 119 (144)
T 2nyc_A 75 -----------------------------------LSLSVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFV 119 (144)
T ss_dssp -----------------------------------CCSBHHHHHHHCC------CEECTTSBHHHHHHHHHHHTCSEEEE
T ss_pred -----------------------------------CCccHHHHHhcCccccCCCeEECCCCcHHHHHHHHHHCCCCEEEE
Confidence 01234556654 5789999999999999999999999999
Q ss_pred eecCCCCCcEEEEEecccccHHHHH
Q 003801 745 IPKISNGSPVMGILTRHDFMPEHIL 769 (794)
Q Consensus 745 Vd~~~~~g~vvGIITr~Dll~~~~~ 769 (794)
+|+ +|+++|+||++|++++...
T Consensus 120 vd~---~g~~~Giit~~dil~~l~~ 141 (144)
T 2nyc_A 120 VDD---VGRLVGVLTLSDILKYILL 141 (144)
T ss_dssp ECT---TSBEEEEEEHHHHHHHHHH
T ss_pred ECC---CCCEEEEEEHHHHHHHHHh
Confidence 997 7999999999999987754
No 38
>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1
Probab=99.60 E-value=2.3e-15 Score=141.16 Aligned_cols=123 Identities=15% Similarity=0.151 Sum_probs=105.0
Q ss_pred eeccccc---cceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCCCCCcc
Q 003801 598 TVGDVVT---APLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNPTVNDA 674 (794)
Q Consensus 598 ~v~diM~---~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~~~~~~ 674 (794)
+++|+|+ ++++++++++++.++++.|.+++++.+||+| + ++++|+|+.+|++..+......
T Consensus 7 ~v~~im~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~-----~~~~Givt~~dl~~~~~~~~~~---------- 70 (135)
T 2rc3_A 7 TVKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMK-D-----EKLVGILTERDFSRKSYLLDKP---------- 70 (135)
T ss_dssp BHHHHHHHHCCCCCEECTTSBHHHHHHHHHHHTCSEEEEEE-T-----TEEEEEEEHHHHHHHGGGSSSC----------
T ss_pred eHHHHHhcCCCCcEEECCCCcHHHHHHHHHhcCCCEEEEEE-C-----CEEEEEEehHHHHHHHHHcCCC----------
Confidence 8999999 8999999999999999999999999999999 5 8999999999997533211000
Q ss_pred cccchhhhhhccCCCCCCCccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCcE
Q 003801 675 FSQFSAVDFAKRGSGNGDKIEDIELSEEEMEMYVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPV 754 (794)
Q Consensus 675 ~~~~~~~d~~~~~~~~~~~i~di~~~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~v 754 (794)
.....++++|++++.++++++++.++.++|.+.+.+++||+| +|++
T Consensus 71 ------------------------------~~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd----~g~~ 116 (135)
T 2rc3_A 71 ------------------------------VKDTQVKEIMTRQVAYVDLNNTNEDCMALITEMRVRHLPVLD----DGKV 116 (135)
T ss_dssp ------------------------------GGGSBGGGTSBCSCCCBCTTCBHHHHHHHHHHHTCSEEEEEE----TTEE
T ss_pred ------------------------------cccCCHHHhccCCCeEECCCCcHHHHHHHHHHhCCCEEEEEe----CCEE
Confidence 012357788999999999999999999999999999999998 3789
Q ss_pred EEEEecccccHHHHHh
Q 003801 755 MGILTRHDFMPEHILA 770 (794)
Q Consensus 755 vGIITr~Dll~~~~~~ 770 (794)
+|+||++|++++..++
T Consensus 117 ~Giit~~dll~~~~~~ 132 (135)
T 2rc3_A 117 IGLLSIGDLVKDAISQ 132 (135)
T ss_dssp EEEEEHHHHHHHHHC-
T ss_pred EEEEEHHHHHHHHHhc
Confidence 9999999999877543
No 39
>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}
Probab=99.60 E-value=2.5e-15 Score=144.60 Aligned_cols=134 Identities=19% Similarity=0.152 Sum_probs=109.8
Q ss_pred ccccceecccccc--ceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCCC
Q 003801 593 YMRQLTVGDVVTA--PLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNPT 670 (794)
Q Consensus 593 ~l~~l~v~diM~~--~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~~ 670 (794)
.+..++++|+|.+ +++++++++++.++++.|.+++++.+||+|++ ++++|+|+.+|+...+.... .
T Consensus 7 ~l~~~~v~~im~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~-----~~~~Givt~~dl~~~~~~~~----~--- 74 (157)
T 2emq_A 7 EFMQMTVKPFLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDTS-----YKLHGLISMTMMMDAILGLE----R--- 74 (157)
T ss_dssp ---CCBSTTTCEEGGGSCCBCTTSBHHHHHHHHHHSSSSEEEEECTT-----CCEEEEEEHHHHHHHSBCSS----S---
T ss_pred hHhhCcHHhhccCCccceEECCCCcHHHHHHHHHHCCceEEEEEcCC-----CCEEEEeeHHHHHHHHhccc----c---
Confidence 4567899999997 89999999999999999999999999999986 89999999999976543210 0
Q ss_pred CCcccccchhhhhhccCCCCCCCccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCC
Q 003801 671 VNDAFSQFSAVDFAKRGSGNGDKIEDIELSEEEMEMYVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISN 750 (794)
Q Consensus 671 ~~~~~~~~~~~d~~~~~~~~~~~i~di~~~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~ 750 (794)
+.. .......++++|++++.++++++++.++.++|.+.+. +||+|+
T Consensus 75 -------~~~----------------------~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~--l~Vvd~--- 120 (157)
T 2emq_A 75 -------IEF----------------------ERLETMKVEEVMNRNIPRLRLDDSLMKAVGLIVNHPF--VCVEND--- 120 (157)
T ss_dssp -------BCG----------------------GGGGTCBGGGTCBCCCCEEETTSBHHHHHHHHHHSSE--EEEECS---
T ss_pred -------cch----------------------HHhcCCcHHHHhCCCCceecCCCcHHHHHHHHhhCCE--EEEEcC---
Confidence 000 0001245788999999999999999999999999987 999997
Q ss_pred CCcEEEEEecccccHHHHHhcC
Q 003801 751 GSPVMGILTRHDFMPEHILALN 772 (794)
Q Consensus 751 ~g~vvGIITr~Dll~~~~~~~~ 772 (794)
+|+++|+||++|+++.......
T Consensus 121 ~g~~~Giit~~dil~~~~~~~~ 142 (157)
T 2emq_A 121 DGYFAGIFTRREVLKQLNKQLH 142 (157)
T ss_dssp SSSEEEEEEHHHHHHHHHHTTC
T ss_pred CCeEEEEEEHHHHHHHHHHHhh
Confidence 7899999999999998876544
No 40
>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*
Probab=99.60 E-value=3.1e-15 Score=147.97 Aligned_cols=156 Identities=22% Similarity=0.357 Sum_probs=114.4
Q ss_pred cccccceeccccccc----eeEE--eccccHHHHHHHHhcCCCCeeEEe--eCCCCCCCCeEEEEEeHHHHHHHHHhccC
Q 003801 592 PYMRQLTVGDVVTAP----LQLF--HGIEKAGNVVHVLRTTRHNGFPVI--DENPLSETPILYGLILRAHLITLLKKKAF 663 (794)
Q Consensus 592 ~~l~~l~v~diM~~~----vv~l--~~~~sv~~a~~~L~~~~~~~fPVV--d~~~~~~~~~l~GiI~r~dL~~lL~~~~~ 663 (794)
..++.++|+|+|+++ ++++ ++++++.++++.|.+++++.+||+ |++ ++++|+|+++|++..+.....
T Consensus 6 ~~~~~~~v~dim~~~~~~~~~~v~~~~~~~~~~a~~~~~~~~~~~~pVv~~d~~-----~~lvGiit~~dl~~~~~~~~~ 80 (185)
T 2j9l_A 6 EFAHKTLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRES-----QRLVGFVLRRDLIISIENARK 80 (185)
T ss_dssp ---CCCBHHHHSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCTTT-----CBEEEEEEHHHHHHHHHHHHT
T ss_pred hhhccCcHHHHhcccccCceEEEecCCCccHHHHHHHHHhcCCCceeEEEECCC-----CeEEEEEEHHHHHHHHHhhcc
Confidence 457789999999987 7888 999999999999999999999999 555 899999999999887654321
Q ss_pred CCCCCCCCCcccccchhhhhhccCCCCCCCccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCCEEE
Q 003801 664 LPTPNPTVNDAFSQFSAVDFAKRGSGNGDKIEDIELSEEEMEMYVDLHPFANASPYTVVETMSLAKALILFREVGLRHLL 743 (794)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~di~~~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~Lp 743 (794)
......... ...+.+... +. ........+++++|++++.+|.+++++.+++++|.+.+.+++|
T Consensus 81 ~~~~~~~~~-------~~~~~~~~~-------~~---~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~l~ 143 (185)
T 2j9l_A 81 KQDGVVSTS-------IIYFTEHSP-------PL---PPYTPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCL 143 (185)
T ss_dssp SCSCCCTTC-------EEECSSSCC-------CC---CTTCCCCEECGGGEESSCCEEETTSBHHHHHHHHHHHTCSEEE
T ss_pred cCCCccccc-------eeecccCCc-------cc---ccccccCccHHHhhCcCCeEeCCCCCHHHHHHHHHhCCCcEEE
Confidence 000000000 000000000 00 0001123568899999999999999999999999999999999
Q ss_pred EeecCCCCCcEEEEEecccccHHHHHhcCc
Q 003801 744 VIPKISNGSPVMGILTRHDFMPEHILALNP 773 (794)
Q Consensus 744 VVd~~~~~g~vvGIITr~Dll~~~~~~~~~ 773 (794)
|+| +|+++|+||++|+++...+....
T Consensus 144 Vvd----~g~~vGiit~~dll~~l~~~~~~ 169 (185)
T 2j9l_A 144 VTH----NGRLLGIITKKDVLKHIAQMANQ 169 (185)
T ss_dssp EEE----TTEEEEEEEHHHHHHHHHHHCC-
T ss_pred EEE----CCEEEEEEEHHHHHHHHHHhhcc
Confidence 998 48999999999999988765544
No 41
>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}
Probab=99.60 E-value=3.9e-15 Score=144.18 Aligned_cols=132 Identities=18% Similarity=0.273 Sum_probs=106.7
Q ss_pred cccceeccccccceeEEeccccHHHHHHHHhcCCCCeeEEeeC--CCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCCCC
Q 003801 594 MRQLTVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDE--NPLSETPILYGLILRAHLITLLKKKAFLPTPNPTV 671 (794)
Q Consensus 594 l~~l~v~diM~~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~--~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~~~ 671 (794)
...++|+|+|+++++++++++++.++.+.|.+++++.+||+|+ + ++++|+|+++|+...+.........
T Consensus 10 ~~~~~v~dim~~~~~~v~~~~~~~~a~~~~~~~~~~~~pVvd~~~~-----~~~~Givt~~dl~~~~~~~~~~~~~---- 80 (164)
T 2pfi_A 10 SHHVRVEHFMNHSITTLAKDTPLEEVVKVVTSTDVTEYPLVESTES-----QILVGIVQRAQLVQALQAEPPSRAP---- 80 (164)
T ss_dssp CCSCBHHHHCBCCCCCEETTCBHHHHHHHHHTCCCSEEEEESCTTT-----CBEEEEEEHHHHHHHHHC-----------
T ss_pred ccCCCHHHHcCCCCeEECCCCcHHHHHHHHHhCCCCceeEEecCCC-----CEEEEEEEHHHHHHHHHhhccccCC----
Confidence 4578999999999999999999999999999999999999996 4 8999999999998776432100000
Q ss_pred CcccccchhhhhhccCCCCCCCccccccchhhhhcccccccccccC------CceecCCCCHHHHHHHHHHcCCCEEEEe
Q 003801 672 NDAFSQFSAVDFAKRGSGNGDKIEDIELSEEEMEMYVDLHPFANAS------PYTVVETMSLAKALILFREVGLRHLLVI 745 (794)
Q Consensus 672 ~~~~~~~~~~d~~~~~~~~~~~i~di~~~~~~~~~~idl~~im~~~------p~tV~~~~sL~~a~~lf~~~glr~LpVV 745 (794)
.. ...+.++|+++ +.++.+++++.++.++|.+.+.+++||+
T Consensus 81 ---~~------------------------------~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVv 127 (164)
T 2pfi_A 81 ---GH------------------------------QQCLQDILARGCPTEPVTLTLFSETTLHQAQNLFKLLNLQSLFVT 127 (164)
T ss_dssp ---CC------------------------------CCBHHHHHHTTCCCBCCCCCEETTCBHHHHHHHHHHTTCSEEEEE
T ss_pred ---cc------------------------------cchhhhhhcccccccCCceEECCCCcHHHHHHHHHHhCCCEEEEE
Confidence 00 11233444444 7899999999999999999999999999
Q ss_pred ecCCCCCcEEEEEecccccHHHHHhc
Q 003801 746 PKISNGSPVMGILTRHDFMPEHILAL 771 (794)
Q Consensus 746 d~~~~~g~vvGIITr~Dll~~~~~~~ 771 (794)
|+ |+++|+||++|+++...+..
T Consensus 128 d~----g~l~Giit~~dil~~~~~~~ 149 (164)
T 2pfi_A 128 SR----GRAVGCVSWVEMKKAISNLT 149 (164)
T ss_dssp ET----TEEEEEEEHHHHHHHHHHHH
T ss_pred EC----CEEEEEEEHHHHHHHHHhhh
Confidence 84 89999999999999877654
No 42
>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A
Probab=99.59 E-value=4.9e-15 Score=147.05 Aligned_cols=126 Identities=16% Similarity=0.158 Sum_probs=109.2
Q ss_pred cceeccccccceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCCCCCccc
Q 003801 596 QLTVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNPTVNDAF 675 (794)
Q Consensus 596 ~l~v~diM~~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~~~~~~~ 675 (794)
.++++|+|+++++++++++++.++++.|.+++++.+||+|++ ++++|+|+.+|++..+.... .
T Consensus 8 ~~~v~~im~~~~~~v~~~~~l~ea~~~~~~~~~~~~pVvd~~-----g~~vGivt~~dl~~~~~~~~----~-------- 70 (184)
T 1pvm_A 8 FMRVEKIMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDN-----GNDVGLLSERSIIKRFIPRN----K-------- 70 (184)
T ss_dssp CCBGGGTSBTTCCEEETTCBHHHHHHHHHHHTCCEEEEECTT-----SCEEEEEEHHHHHHHTGGGC----C--------
T ss_pred ccCHHHhcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCC-----CcEEEEEeHHHHHHHHhhcc----c--------
Confidence 379999999999999999999999999999999999999976 89999999999977543210 0
Q ss_pred ccchhhhhhccCCCCCCCccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCcEE
Q 003801 676 SQFSAVDFAKRGSGNGDKIEDIELSEEEMEMYVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVM 755 (794)
Q Consensus 676 ~~~~~~d~~~~~~~~~~~i~di~~~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~vv 755 (794)
......++++|++++.++.+++++.+++++|.+.+.+++||+|+ +|+++
T Consensus 71 ----------------------------~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~g~~~ 119 (184)
T 1pvm_A 71 ----------------------------KPDEVPIRLVMRKPIPKVKSDYDVKDVAAYLSENGLERCAVVDD---PGRVV 119 (184)
T ss_dssp ----------------------------CGGGSBGGGTSBSSCCEEETTCBHHHHHHHHHHHTCSEEEEECT---TCCEE
T ss_pred ----------------------------CcccCCHHHHhCCCCcEECCCCCHHHHHHHHHHcCCcEEEEEcC---CCeEE
Confidence 00123578889999999999999999999999999999999997 78999
Q ss_pred EEEecccccHHHHH
Q 003801 756 GILTRHDFMPEHIL 769 (794)
Q Consensus 756 GIITr~Dll~~~~~ 769 (794)
|+||++|+++....
T Consensus 120 Givt~~dll~~~~~ 133 (184)
T 1pvm_A 120 GIVTLTDLSRYLSR 133 (184)
T ss_dssp EEEEHHHHTTTSCH
T ss_pred EEEEHHHHHHHHHh
Confidence 99999999986554
No 43
>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1
Probab=99.58 E-value=2.3e-15 Score=145.50 Aligned_cols=135 Identities=17% Similarity=0.156 Sum_probs=110.7
Q ss_pred ccccceecccccc--ceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCCC
Q 003801 593 YMRQLTVGDVVTA--PLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNPT 670 (794)
Q Consensus 593 ~l~~l~v~diM~~--~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~~ 670 (794)
.+..++++|+|++ +++++++++++.++++.|.+++++.+||+|++ ++++|+|+.+|+...+.... .
T Consensus 10 ~l~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~-----~~lvGivt~~dl~~~~~~~~----~--- 77 (159)
T 1yav_A 10 QLLEATVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPS-----YRLHGLIGTNMIMNSIFGLE----R--- 77 (159)
T ss_dssp -CTTCBHHHHSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECTT-----CBEEEEEEHHHHHHHHBCSS----S---
T ss_pred HHhHhhHHHHhCCccceEEECCCCcHHHHHHHHHhCCCcEEEEECCC-----CCEEEEeEHHHHHHHhhhhc----c---
Confidence 3567899999998 89999999999999999999999999999987 89999999999987654311 0
Q ss_pred CCcccccchhhhhhccCCCCCCCccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCC
Q 003801 671 VNDAFSQFSAVDFAKRGSGNGDKIEDIELSEEEMEMYVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISN 750 (794)
Q Consensus 671 ~~~~~~~~~~~d~~~~~~~~~~~i~di~~~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~ 750 (794)
+ +. +......++++|++++.++.+++++.++.++|.+.+. +||+|+
T Consensus 78 -------~---~~-------------------~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~--lpVvd~--- 123 (159)
T 1yav_A 78 -------I---EF-------------------EKLDQITVEEVMLTDIPRLHINDPIMKGFGMVINNGF--VCVEND--- 123 (159)
T ss_dssp -------B---CG-------------------GGTTTSBHHHHSBCSCCEEETTSBHHHHHHHTTTCSE--EEEECT---
T ss_pred -------c---ch-------------------hhhccCCHHHhcCCCCceEcCCCCHHHHHHHHHhCCE--EEEEeC---
Confidence 0 00 0001245778899999999999999999999999977 999997
Q ss_pred CCcEEEEEecccccHHHHHhcCc
Q 003801 751 GSPVMGILTRHDFMPEHILALNP 773 (794)
Q Consensus 751 ~g~vvGIITr~Dll~~~~~~~~~ 773 (794)
+|+++|+||++|+++...++...
T Consensus 124 ~g~~vGiit~~dil~~~~~~~~~ 146 (159)
T 1yav_A 124 EQVFEGIFTRRVVLKELNKHIRS 146 (159)
T ss_dssp TCBEEEEEEHHHHHHHHHHHC--
T ss_pred CCeEEEEEEHHHHHHHHHHHHHh
Confidence 79999999999999988765543
No 44
>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}
Probab=99.58 E-value=5.6e-15 Score=142.39 Aligned_cols=127 Identities=14% Similarity=0.191 Sum_probs=107.6
Q ss_pred ceeccccc------cceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCCC
Q 003801 597 LTVGDVVT------APLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNPT 670 (794)
Q Consensus 597 l~v~diM~------~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~~ 670 (794)
.+|+|+|+ +++.++++++++.++++.|.+++++.+||+| + ++++|+|+.+|+++.+......
T Consensus 7 ~~v~dim~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~V~~-~-----~~~~Givt~~dl~~~~~~~~~~------ 74 (157)
T 4fry_A 7 TTVAQILKAKPDSGRTIYTVTKNDFVYDAIKLMAEKGIGALLVVD-G-----DDIAGIVTERDYARKVVLQERS------ 74 (157)
T ss_dssp CBHHHHHHHSTTTTCCCCEEETTSBHHHHHHHHHHHTCSEEEEES-S-----SSEEEEEEHHHHHHHSGGGTCC------
T ss_pred HHHHHHHhcccccCCCCeEECCCCcHHHHHHHHHHcCCCEEEEee-C-----CEEEEEEEHHHHHHHHHhccCC------
Confidence 57999999 5569999999999999999999999999965 4 7999999999998765432100
Q ss_pred CCcccccchhhhhhccCCCCCCCccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCC
Q 003801 671 VNDAFSQFSAVDFAKRGSGNGDKIEDIELSEEEMEMYVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISN 750 (794)
Q Consensus 671 ~~~~~~~~~~~d~~~~~~~~~~~i~di~~~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~ 750 (794)
.....++++|++++.++++++++.+++++|.+.+.+++||+|
T Consensus 75 ----------------------------------~~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd---- 116 (157)
T 4fry_A 75 ----------------------------------SKATRVEEIMTAKVRYVEPSQSTDECMALMTEHRMRHLPVLD---- 116 (157)
T ss_dssp ----------------------------------SSSCBHHHHSBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEE----
T ss_pred ----------------------------------ccccCHHHHcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEE----
Confidence 012346778889999999999999999999999999999998
Q ss_pred CCcEEEEEecccccHHHHHhcCc
Q 003801 751 GSPVMGILTRHDFMPEHILALNP 773 (794)
Q Consensus 751 ~g~vvGIITr~Dll~~~~~~~~~ 773 (794)
+|+++|+||++|+++....+...
T Consensus 117 ~g~~~Giit~~dil~~l~~~~~~ 139 (157)
T 4fry_A 117 GGKLIGLISIGDLVKSVIADQQF 139 (157)
T ss_dssp TTEEEEEEEHHHHHHHHHTTCCC
T ss_pred CCEEEEEEEHHHHHHHHHHHHHh
Confidence 48999999999999988776544
No 45
>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*
Probab=99.57 E-value=2.1e-14 Score=149.29 Aligned_cols=165 Identities=13% Similarity=0.104 Sum_probs=109.7
Q ss_pred cceeccccccceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCCCC----CC---
Q 003801 596 QLTVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPT----PN--- 668 (794)
Q Consensus 596 ~l~v~diM~~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~----~~--- 668 (794)
..+++|+|+++++++++++++.++++.|.+++++.+||+|++ ++++|+|+.+|+.+.+....-... ..
T Consensus 6 ~~~v~~im~~~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~~-----~~l~Giit~~di~~~~~~~~~~~~~~~~~~~~~ 80 (245)
T 3l2b_A 6 KLKVEDLEMDKIAPLAPEVSLKMAWNIMRDKNLKSIPVADGN-----NHLLGMLSTSNITATYMDIWDSNILAKSATSLD 80 (245)
T ss_dssp CCBGGGSCCBCCCCBCTTCBHHHHHHHHHHTTCSEEEEECTT-----CBEEEEEEHHHHHHHHHCCCCTTHHHHTTCCHH
T ss_pred cCcHHHhcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCC-----CEEEEEEEHHHHHHHHHHhhhhhhhhhccCCHH
Confidence 468999999999999999999999999999999999999987 899999999999987653210000 00
Q ss_pred ------------------CCCCc-ccccchhhhhhccCCCCCC---------------------------Cc--------
Q 003801 669 ------------------PTVND-AFSQFSAVDFAKRGSGNGD---------------------------KI-------- 694 (794)
Q Consensus 669 ------------------~~~~~-~~~~~~~~d~~~~~~~~~~---------------------------~i-------- 694 (794)
..... .........+.+....... .+
T Consensus 81 ~v~~~l~~~~l~~~~~~~~~~g~~~i~a~~~~~~~~~~~~~~ivIvgdr~~~~~~~i~~~~~~liit~~~~~~~~v~~~a 160 (245)
T 3l2b_A 81 NILDTLSAEAQNINEERKVFPGKVVVAAMQAESLKEFISEGDIAIAGDRAEIQAELIELKVSLLIVTGGHTPSKEIIELA 160 (245)
T ss_dssp HHHHHTTCEEEECCTTCCCCCSCEEECCSCGGGGGGTCCTTCEEEECSCHHHHHHHHHTTCSEEEECTTCCCCHHHHHHH
T ss_pred HHHHHhCCEEEeccCCcceeeeeEEEEeCChHHHHhcCCCCCEEEECCCHHHHHHHHHcCCCEEEECCCCCCCHHHHHHH
Confidence 00000 0000001111110000000 00
Q ss_pred -----------cccccchhhhhcccccccccc-cCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCcEEEEEeccc
Q 003801 695 -----------EDIELSEEEMEMYVDLHPFAN-ASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHD 762 (794)
Q Consensus 695 -----------~di~~~~~~~~~~idl~~im~-~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~vvGIITr~D 762 (794)
.|..-..........++++|+ +++.++++++++.++.++|.+.+.+++||+|+ +|+++|+||++|
T Consensus 161 ~~~~~~~i~t~~d~~~~~~~~~~~~~v~~im~~~~~~~~~~~~~~~~~~~~m~~~~~~~~pVvd~---~~~~~Giit~~d 237 (245)
T 3l2b_A 161 KKNNITVITTPHDSFTASRLIVQSLPVDYVMTKDNLVAVSTDDLVEDVKVTMSETRYSNYPVIDE---NNKVVGSIARFH 237 (245)
T ss_dssp HHHTCEEEECSSCHHHHHHHGGGGSBHHHHSBCTTCCCEETTSBHHHHHHHHHHHCCSEEEEECT---TCBEEEEEECC-
T ss_pred HHcCCeEEEeCCChHHHHHHHhcCCceeeEecCCccEEECCCCcHHHHHHHHHhcCCceEEEEcC---CCeEEEEEEHHH
Confidence 000001111234567889999 89999999999999999999999999999998 799999999999
Q ss_pred ccHHHH
Q 003801 763 FMPEHI 768 (794)
Q Consensus 763 ll~~~~ 768 (794)
++++..
T Consensus 238 ll~~~~ 243 (245)
T 3l2b_A 238 LISTHK 243 (245)
T ss_dssp ------
T ss_pred hhchhh
Confidence 998653
No 46
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*
Probab=99.53 E-value=2e-14 Score=166.17 Aligned_cols=155 Identities=14% Similarity=0.145 Sum_probs=125.5
Q ss_pred hcchHHHHHHHHcCCCccccccccccccceeccccccceeEEecc-ccHHHHHHHHhcCCCCeeEEee-CCCCCCCCeEE
Q 003801 569 FNGNIYDLIMKAKGFPYLETHVEPYMRQLTVGDVVTAPLQLFHGI-EKAGNVVHVLRTTRHNGFPVID-ENPLSETPILY 646 (794)
Q Consensus 569 ~~~~iy~~~l~~~g~p~l~~~~~~~l~~l~v~diM~~~vv~l~~~-~sv~~a~~~L~~~~~~~fPVVd-~~~~~~~~~l~ 646 (794)
+....++.++..+++.......++.+.+.+|+|+|++++++++++ +++.++++.|++++++.+||+| ++ ++++
T Consensus 356 ls~~~~~~~l~~rg~~~~~~~~~~~l~~~~V~diM~~~~vtv~~~~~tv~ea~~~m~~~~~~~lpVvd~~~-----g~lv 430 (527)
T 3pc3_A 356 MTKFVSDNWMEARNFKEPVNEHGHWWWSLAIAELELPAPPVILKSDATVGEAIALMKKHRVDQLPVVDQDD-----GSVL 430 (527)
T ss_dssp TTTTTSHHHHHHTTSSCCCCTTCCTTTTSBGGGGCCCCCSCCEETTCBHHHHHHHHHHHTCSEEEEECTTT-----CCEE
T ss_pred HhhhhcHHHHHhcCCccccccccccccCCcHHHhCcCCCeEEcCCCCcHHHHHHHHHHcCCCeEEEEECCC-----CEEE
Confidence 344455677788887654444456688999999999999999999 9999999999999999999999 55 8999
Q ss_pred EEEeHHHHHHHHHhccCCCCCCCCCCcccccchhhhhhccCCCCCCCccccccchhhhhcccccccccccCCceecCCCC
Q 003801 647 GLILRAHLITLLKKKAFLPTPNPTVNDAFSQFSAVDFAKRGSGNGDKIEDIELSEEEMEMYVDLHPFANASPYTVVETMS 726 (794)
Q Consensus 647 GiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~i~di~~~~~~~~~~idl~~im~~~p~tV~~~~s 726 (794)
|+|+++||++.+...... ....++++|++++.+|+++++
T Consensus 431 GiVt~~Dll~~l~~~~~~-----------------------------------------~~~~V~~im~~~~~~v~~~~~ 469 (527)
T 3pc3_A 431 GVVGQETLITQIVSMNRQ-----------------------------------------QSDPAIKALNKRVIRLNESEI 469 (527)
T ss_dssp EEEEHHHHHHHHHHHCCC-----------------------------------------TTSBGGGGEETTCCEEETTSB
T ss_pred EEEEHHHHHHHHHhccCc-----------------------------------------CCCcHHHHhcCCCeEECCCCc
Confidence 999999998776542100 123478899999999999999
Q ss_pred HHHHHHHHHHcCCCEEEEeecC-CCCCcEEEEEecccccHHHHHhc
Q 003801 727 LAKALILFREVGLRHLLVIPKI-SNGSPVMGILTRHDFMPEHILAL 771 (794)
Q Consensus 727 L~~a~~lf~~~glr~LpVVd~~-~~~g~vvGIITr~Dll~~~~~~~ 771 (794)
+.++.++|.+.+. +||||++ .++|+++||||++|+++++.++.
T Consensus 470 l~~a~~~m~~~~~--~pVVd~~~~~~g~lvGIVT~~Dll~~l~~~~ 513 (527)
T 3pc3_A 470 LGKLARVLEVDPS--VLILGKNPAGKVELKALATKLDVTTFIAAGK 513 (527)
T ss_dssp HHHHHHHHTTCSE--EEEEEECSSSCEEEEEEEEHHHHHHHHHTCC
T ss_pred HHHHHHHHhhCCE--EEEEeCCcccCCeEEEEEEHHHHHHHHHhcc
Confidence 9999999987765 7999860 11289999999999999887654
No 47
>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1
Probab=99.52 E-value=2.2e-14 Score=146.03 Aligned_cols=119 Identities=21% Similarity=0.260 Sum_probs=105.2
Q ss_pred cceeccccccceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCCCCCccc
Q 003801 596 QLTVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNPTVNDAF 675 (794)
Q Consensus 596 ~l~v~diM~~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~~~~~~~ 675 (794)
..+++++|.++++++++++++.++++.|.+++++++||+|++ ++++|+|+.+|+...+.
T Consensus 12 ~~~~~~~~~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~-----~~l~Givt~~dl~~~~~---------------- 70 (213)
T 1vr9_A 12 HMKVKKWVTQDFPMVEESATVRECLHRMRQYQTNECIVKDRE-----GHFRGVVNKEDLLDLDL---------------- 70 (213)
T ss_dssp -CBGGGGCBSCSCEEETTCBHHHHHHHHHHTTSSEEEEECTT-----SBEEEEEEGGGGTTSCT----------------
T ss_pred ccCHHHhhcCCCeEECCCCcHHHHHHHHHHCCCCEEEEEcCC-----CEEEEEEEHHHHHhhcC----------------
Confidence 357899999999999999999999999999999999999976 89999999999843110
Q ss_pred ccchhhhhhccCCCCCCCccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCcEE
Q 003801 676 SQFSAVDFAKRGSGNGDKIEDIELSEEEMEMYVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVM 755 (794)
Q Consensus 676 ~~~~~~d~~~~~~~~~~~i~di~~~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~vv 755 (794)
...++++|++++.++.+++++.++.++|.+.+.+++||+|+ +|+++
T Consensus 71 -------------------------------~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~g~lv 116 (213)
T 1vr9_A 71 -------------------------------DSSVFNKVSLPDFFVHEEDNITHALLLFLEHQEPYLPVVDE---EMRLK 116 (213)
T ss_dssp -------------------------------TSBSGGGCBCTTCCEETTSBHHHHHHHHHHCCCSEEEEECT---TCBEE
T ss_pred -------------------------------CCcHHHHccCCCEEECCCCcHHHHHHHHHHhCCCEEEEEcC---CCEEE
Confidence 12367889999999999999999999999999999999997 79999
Q ss_pred EEEecccccHHHHH
Q 003801 756 GILTRHDFMPEHIL 769 (794)
Q Consensus 756 GIITr~Dll~~~~~ 769 (794)
|+||++|+++....
T Consensus 117 Giit~~Dil~~~~~ 130 (213)
T 1vr9_A 117 GAVSLHDFLEALIE 130 (213)
T ss_dssp EEEEHHHHHHHHHH
T ss_pred EEEEHHHHHHHHHH
Confidence 99999999987654
No 48
>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1
Probab=99.51 E-value=1.7e-14 Score=153.67 Aligned_cols=129 Identities=16% Similarity=0.090 Sum_probs=109.6
Q ss_pred ccceeccccccceeEEeccccHHHHHHHHhcC-----CCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCC
Q 003801 595 RQLTVGDVVTAPLQLFHGIEKAGNVVHVLRTT-----RHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNP 669 (794)
Q Consensus 595 ~~l~v~diM~~~vv~l~~~~sv~~a~~~L~~~-----~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~ 669 (794)
...+|+++|+++++++++++++.++++.|+++ +++.+||+|++ ++++|+|+.+|++.. .
T Consensus 135 ~~~~v~~iM~~~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~pVvd~~-----~~lvGivt~~dll~~---~-------- 198 (286)
T 2oux_A 135 EDETAGAIMTTEFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQE-----NHLVGVISLRDLIVN---D-------- 198 (286)
T ss_dssp CTTBHHHHCBSCCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECTT-----CBEEEEEEHHHHTTS---C--------
T ss_pred ChHHHHHhCCCCceEECCCCcHHHHHHHHHHcccCccceeEEEEEcCC-----CeEEEEEEHHHHHcC---C--------
Confidence 46799999999999999999999999999987 78889999987 899999999999431 0
Q ss_pred CCCcccccchhhhhhccCCCCCCCccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCC
Q 003801 670 TVNDAFSQFSAVDFAKRGSGNGDKIEDIELSEEEMEMYVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKIS 749 (794)
Q Consensus 670 ~~~~~~~~~~~~d~~~~~~~~~~~i~di~~~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~ 749 (794)
....++++|++++.+|++++++.++.++|.+++.+++||||+
T Consensus 199 ------------------------------------~~~~v~~im~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~-- 240 (286)
T 2oux_A 199 ------------------------------------DDTLIADILNERVISVHVGDDQEDVAQTIRDYDFLAVPVTDY-- 240 (286)
T ss_dssp ------------------------------------TTSBHHHHSBSCCCCEETTSBHHHHHHHHHHHTCSEEEEECT--
T ss_pred ------------------------------------CCCcHHHHcCCCCeeecCCCCHHHHHHHHHHcCCcEEEEEcC--
Confidence 013467789899999999999999999999999999999998
Q ss_pred CCCcEEEEEecccccHHHHHhcCcccccc
Q 003801 750 NGSPVMGILTRHDFMPEHILALNPLLARS 778 (794)
Q Consensus 750 ~~g~vvGIITr~Dll~~~~~~~~~~l~~~ 778 (794)
+|+++|+||++|+++....+...+..+.
T Consensus 241 -~g~lvGiIT~~Dil~~i~~e~~ed~~~~ 268 (286)
T 2oux_A 241 -DDHLLGIVTVDDIIDVIDDEAASDYSGL 268 (286)
T ss_dssp -TCBEEEEEEHHHHHHHHHHHHHC-----
T ss_pred -CCeEEEEEEHHHHHHHHHHHhHHHHHHh
Confidence 7999999999999998877665555443
No 49
>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1
Probab=99.50 E-value=3.1e-14 Score=151.84 Aligned_cols=135 Identities=17% Similarity=0.181 Sum_probs=113.9
Q ss_pred cceeccccccceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCCCCCccc
Q 003801 596 QLTVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNPTVNDAF 675 (794)
Q Consensus 596 ~l~v~diM~~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~~~~~~~ 675 (794)
..+++++|++++.++++++++.++++.|.+++++.+||+|++ ++++|+|+++|++..+.+.. .
T Consensus 155 ~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~-----~~~~Givt~~dl~~~~~~~~-~----------- 217 (296)
T 3ddj_A 155 IFPVKVFMSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDD-----NKVVGIVTVVNAIKQLAKAV-D----------- 217 (296)
T ss_dssp CCBHHHHSBCSCCCEETTSBHHHHHHHHHHHTCSEEEEECTT-----SCEEEEEEHHHHHHHHHHHH-H-----------
T ss_pred cccHHHhhcCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcCC-----CEEEEEEEHHHHHHHHHHHH-h-----------
Confidence 458999999999999999999999999999999999999977 89999999999988765311 0
Q ss_pred ccchhhhhhccCCCCCCCccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCcEE
Q 003801 676 SQFSAVDFAKRGSGNGDKIEDIELSEEEMEMYVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVM 755 (794)
Q Consensus 676 ~~~~~~d~~~~~~~~~~~i~di~~~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~vv 755 (794)
++. .+......+.++|+++++++.+++++.++.++|.+.+.+++||+|+ +|+++
T Consensus 218 ------~~~-----------------~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~---~g~~~ 271 (296)
T 3ddj_A 218 ------KLD-----------------PDYFYGKVVKDVMVTNLVTIDELASVNRAAAEMIVKRIGSLLILNK---DNTIR 271 (296)
T ss_dssp ------HTC-----------------THHHHTCBHHHHSBCCCCBCCTTSBHHHHHHHHHHHTCSEEEEECT---TSCEE
T ss_pred ------hcC-----------------hhhhcCcCHHHHhCCCCeEECCCCcHHHHHHHHHHcCCCEEEEECC---CCeEE
Confidence 000 0011234578899999999999999999999999999999999997 79999
Q ss_pred EEEecccccHHHHHhcCc
Q 003801 756 GILTRHDFMPEHILALNP 773 (794)
Q Consensus 756 GIITr~Dll~~~~~~~~~ 773 (794)
|+||++|++++...+...
T Consensus 272 Giit~~Dil~~l~~~~~~ 289 (296)
T 3ddj_A 272 GIITERDLLIALHHILVM 289 (296)
T ss_dssp EEEEHHHHHHHHHHHHHH
T ss_pred EEEcHHHHHHHHHHHhcc
Confidence 999999999988776543
No 50
>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A
Probab=99.50 E-value=5.1e-14 Score=149.39 Aligned_cols=129 Identities=16% Similarity=0.142 Sum_probs=105.6
Q ss_pred ccceeccccccceeEEeccccHHHHHHHHhcC-----CCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCC
Q 003801 595 RQLTVGDVVTAPLQLFHGIEKAGNVVHVLRTT-----RHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNP 669 (794)
Q Consensus 595 ~~l~v~diM~~~vv~l~~~~sv~~a~~~L~~~-----~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~ 669 (794)
...+++++|+++++++++++++.++++.|+++ +++.+||+|++ ++++|+|+.+|++.. .
T Consensus 133 ~~~~v~~iM~~~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~~Vvd~~-----~~lvGivt~~dll~~---~-------- 196 (278)
T 2yvy_A 133 EEDEAGGLMTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEK-----GRLKGVLSLRDLIVA---D-------- 196 (278)
T ss_dssp CTTBGGGTCBSCCCEECTTSBHHHHHHHHHHHTTTCSCSSEEEEECTT-----CBEEEEEEHHHHHHS---C--------
T ss_pred CcchHHhhcCCCceEECCCCcHHHHHHHHHHccCCccceeEEEEECCC-----CCEEEEEEHHHHhcC---C--------
Confidence 45689999999999999999999999999987 67999999986 899999999999531 0
Q ss_pred CCCcccccchhhhhhccCCCCCCCccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCC
Q 003801 670 TVNDAFSQFSAVDFAKRGSGNGDKIEDIELSEEEMEMYVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKIS 749 (794)
Q Consensus 670 ~~~~~~~~~~~~d~~~~~~~~~~~i~di~~~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~ 749 (794)
....++++|++++++|++++++.++.++|++++.+++||||+
T Consensus 197 ------------------------------------~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-- 238 (278)
T 2yvy_A 197 ------------------------------------PRTRVAEIMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDE-- 238 (278)
T ss_dssp ------------------------------------TTCBSTTTSBSSCCCEETTSBHHHHHHHHHHHTCSEEEEECT--
T ss_pred ------------------------------------CCCcHHHHhCCCCeEEeCCCCHHHHHHHHHhcCCCEEEEEeC--
Confidence 013467899999999999999999999999999999999998
Q ss_pred CCCcEEEEEecccccHHHHHhcCcccccc
Q 003801 750 NGSPVMGILTRHDFMPEHILALNPLLARS 778 (794)
Q Consensus 750 ~~g~vvGIITr~Dll~~~~~~~~~~l~~~ 778 (794)
+|+++||||++|+++....+...+..+.
T Consensus 239 -~g~lvGivT~~Dil~~i~~e~~ed~~~~ 266 (278)
T 2yvy_A 239 -EGRLVGIVTVDDVLDVLEAEATEDIHKL 266 (278)
T ss_dssp -TSBEEEEEEHHHHHHHC-----------
T ss_pred -CCeEEEEEEHHHHHHHHHHHhHHHHHHh
Confidence 7999999999999998777665555443
No 51
>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C
Probab=99.46 E-value=1.4e-13 Score=148.57 Aligned_cols=127 Identities=18% Similarity=0.312 Sum_probs=109.1
Q ss_pred cceeccc---cccceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCCCCC
Q 003801 596 QLTVGDV---VTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNPTVN 672 (794)
Q Consensus 596 ~l~v~di---M~~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~~~~ 672 (794)
+.+++++ |+++++++++++++.++.+.|.+++++.+||+|++ ++++|+|+++|++..+....+.
T Consensus 186 ~~~v~~~~~~m~~~~~~v~~~~~~~~~~~~m~~~~~~~~pVvd~~-----~~~~Giit~~dl~~~~~~~~~~-------- 252 (323)
T 3t4n_C 186 KIPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDEN-----GYLINVYEAYDVLGLIKGGIYN-------- 252 (323)
T ss_dssp CSBGGGTTCSBCTTCCCBCTTSBHHHHHHHHHHHTCSEEEEECTT-----CBEEEEEETTHHHHHHHTTHHH--------
T ss_pred hCcHHHcCCCCCCCcEEECCCCcHHHHHHHHHHcCCCEEEEECCC-----CeEEEEEeHHHHHHHHhhchhh--------
Confidence 4578999 99999999999999999999999999999999987 8999999999998877542100
Q ss_pred cccccchhhhhhccCCCCCCCccccccchhhhhccccccccccc------CCceecCCCCHHHHHHHHHHcCCCEEEEee
Q 003801 673 DAFSQFSAVDFAKRGSGNGDKIEDIELSEEEMEMYVDLHPFANA------SPYTVVETMSLAKALILFREVGLRHLLVIP 746 (794)
Q Consensus 673 ~~~~~~~~~d~~~~~~~~~~~i~di~~~~~~~~~~idl~~im~~------~p~tV~~~~sL~~a~~lf~~~glr~LpVVd 746 (794)
+....++++|++ +++++++++++.++.++|.+.+.+++||+|
T Consensus 253 --------------------------------~~~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd 300 (323)
T 3t4n_C 253 --------------------------------DLSLSVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVD 300 (323)
T ss_dssp --------------------------------HTTSBHHHHGGGSCTTCCCCEEECTTCBHHHHHHHHHHSCCCEEEEEC
T ss_pred --------------------------------hccCCHHHHHhhccccCCCCEEECCCCCHHHHHHHHHHhCCCEEEEEC
Confidence 012235666766 789999999999999999999999999999
Q ss_pred cCCCCCcEEEEEecccccHHHHHh
Q 003801 747 KISNGSPVMGILTRHDFMPEHILA 770 (794)
Q Consensus 747 ~~~~~g~vvGIITr~Dll~~~~~~ 770 (794)
+ +|+++|+||++|++++...+
T Consensus 301 ~---~~~l~Giit~~Dil~~l~~~ 321 (323)
T 3t4n_C 301 D---VGRLVGVLTLSDILKYILLG 321 (323)
T ss_dssp T---TSBEEEEEEHHHHHHHHHHC
T ss_pred C---CCcEEEEEEHHHHHHHHHhc
Confidence 7 79999999999999987753
No 52
>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1
Probab=99.45 E-value=1.5e-13 Score=145.28 Aligned_cols=153 Identities=11% Similarity=0.083 Sum_probs=107.3
Q ss_pred cceeccccccceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHh-ccCCCCCCCCCCcc
Q 003801 596 QLTVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKK-KAFLPTPNPTVNDA 674 (794)
Q Consensus 596 ~l~v~diM~~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~-~~~~~~~~~~~~~~ 674 (794)
..+++++|++++.++++++++.++.+.|.+++++.+||+|++ ++++|+|+.+|++..... +.+...... .
T Consensus 125 ~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~-----~~~~Giit~~dl~~~~~~~~~~~~~~~~----~ 195 (282)
T 2yzq_A 125 GVEIEPYYQRYVSIVWEGTPLKAALKALLLSNSMALPVVDSE-----GNLVGIVDETDLLRDSEIVRIMKSTELA----A 195 (282)
T ss_dssp GCBSTTTSBSCCCCEETTSBHHHHHHHHHTCSSSEEEEECTT-----SCEEEEEEGGGGGGCGGGCC-------------
T ss_pred cCcHHHHhCCCCEEECCCCCHHHHHHHHHHcCCcEEEEEcCC-----CeEEEEEEHHHHhhhhhhhhhhccchhh----h
Confidence 567899999999999999999999999999999999999976 799999999999622111 000000000 0
Q ss_pred cccchhhhhhccCCCCCCCccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCcE
Q 003801 675 FSQFSAVDFAKRGSGNGDKIEDIELSEEEMEMYVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPV 754 (794)
Q Consensus 675 ~~~~~~~d~~~~~~~~~~~i~di~~~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~v 754 (794)
.+...+.+.. ...+..-.........+++++|++++.++.+++++.+|.++|.+.+.+++||+|+ +|++
T Consensus 196 ~~~~~~~~~~--------~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~~~l 264 (282)
T 2yzq_A 196 SSEEEWILES--------HPTLLFEKFELQLPNKPVAEIMTRDVIVATPHMTVHEVALKMAKYSIEQLPVIRG---EGDL 264 (282)
T ss_dssp -------------------------------CCCBGGGTCBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEET---TTEE
T ss_pred hhhhhhhccc--------chHHHHhHhhhhhccCCHHHhcCCCCceeCCCCCHHHHHHHHHHcCcceeEEECC---CCCE
Confidence 0000000000 0000000000111245688999999999999999999999999999999999997 7899
Q ss_pred EEEEecccccHHHH
Q 003801 755 MGILTRHDFMPEHI 768 (794)
Q Consensus 755 vGIITr~Dll~~~~ 768 (794)
+|+||++|++++..
T Consensus 265 vGiit~~Dil~~~~ 278 (282)
T 2yzq_A 265 IGLIRDFDLLKVLV 278 (282)
T ss_dssp EEEEEHHHHGGGGC
T ss_pred EEEEeHHHHHHHHH
Confidence 99999999998654
No 53
>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*
Probab=99.44 E-value=1.2e-13 Score=145.45 Aligned_cols=133 Identities=18% Similarity=0.208 Sum_probs=107.9
Q ss_pred cceeccccccceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCCCCCccc
Q 003801 596 QLTVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNPTVNDAF 675 (794)
Q Consensus 596 ~l~v~diM~~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~~~~~~~ 675 (794)
..+++++|++++.++++++++.++++.|.+++++.+||+++ ++++|+|+++|++..+.+...
T Consensus 147 ~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~------~~~~Givt~~dl~~~~~~~~~------------ 208 (280)
T 3kh5_A 147 NEVIDDYITRDVIVATPGERLKDVARTMVRNGFRRLPVVSE------GRLVGIITSTDFIKLLGSDWA------------ 208 (280)
T ss_dssp TCBSGGGCBCSCCCBCTTCBHHHHHHHHHHHTCSEEEEEET------TEEEEEEEHHHHHHHHTSHHH------------
T ss_pred CCCHHHHhCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC------CEEEEEEEHHHHHHHHhhhhh------------
Confidence 34799999999999999999999999999999999999954 799999999999887643210
Q ss_pred ccchhhhhhccCCCCCCCccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCcEE
Q 003801 676 SQFSAVDFAKRGSGNGDKIEDIELSEEEMEMYVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVM 755 (794)
Q Consensus 676 ~~~~~~d~~~~~~~~~~~i~di~~~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~vv 755 (794)
...+... .. ......+++++|+++++++++++++.+|.++|.+.+.+++||+|+ +|+++
T Consensus 209 ----~~~~~~~------~~--------~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~---~g~~~ 267 (280)
T 3kh5_A 209 ----FNHMQTG------NV--------REITNVRMEEIMKRDVITAKEGDKLKKIAEIMVTNDIGALPVVDE---NLRIK 267 (280)
T ss_dssp ----HHHHHSC------CT--------HHHHHCBHHHHSBSSCCCBCTTCBHHHHHHHHHHHTCCEEEEECT---TCBEE
T ss_pred ----hhhhccc------ch--------hhhhCCcHHHHhcCCCEEECCCCCHHHHHHHHHHCCCCEEEEECC---CCeEE
Confidence 0000000 00 001134578899999999999999999999999999999999998 78999
Q ss_pred EEEecccccHHH
Q 003801 756 GILTRHDFMPEH 767 (794)
Q Consensus 756 GIITr~Dll~~~ 767 (794)
|+||++|+++++
T Consensus 268 Givt~~dil~~l 279 (280)
T 3kh5_A 268 GIITEKDVLKYF 279 (280)
T ss_dssp EEEEHHHHGGGG
T ss_pred EEEeHHHHHHhh
Confidence 999999999753
No 54
>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1
Probab=99.44 E-value=1.6e-13 Score=146.42 Aligned_cols=122 Identities=20% Similarity=0.270 Sum_probs=107.6
Q ss_pred cceeccccccceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCCCCCccc
Q 003801 596 QLTVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNPTVNDAF 675 (794)
Q Consensus 596 ~l~v~diM~~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~~~~~~~ 675 (794)
+.+++|+|+++++++++++++.++++.|.+++++.+||+|++ ++++|+|+.+|++..+....
T Consensus 92 ~~~v~~im~~~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~~-----~~lvGivt~~dl~~~~~~~~------------- 153 (296)
T 3ddj_A 92 TTPIIDYMTPNPVTVYNTSDEFTAINIMVTRNFGSLPVVDIN-----DKPVGIVTEREFLLLYKDLD------------- 153 (296)
T ss_dssp TSBGGGTSEESCCCEETTSCHHHHHHHHHHHTCSEEEEECTT-----SCEEEEEEHHHHGGGGGGSC-------------
T ss_pred cccHHHhccCCCEEEcCCCCHHHHHHHHHHcCCCEEEEEcCC-----CcEEEEEeHHHHHHhhhccc-------------
Confidence 567999999999999999999999999999999999999887 89999999999965443211
Q ss_pred ccchhhhhhccCCCCCCCccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCcEE
Q 003801 676 SQFSAVDFAKRGSGNGDKIEDIELSEEEMEMYVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVM 755 (794)
Q Consensus 676 ~~~~~~d~~~~~~~~~~~i~di~~~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~vv 755 (794)
....++++|++++.++++++++.++.++|.+.+.+++||+|+ +|+++
T Consensus 154 ------------------------------~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~---~~~~~ 200 (296)
T 3ddj_A 154 ------------------------------EIFPVKVFMSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDD---DNKVV 200 (296)
T ss_dssp ------------------------------CCCBHHHHSBCSCCCEETTSBHHHHHHHHHHHTCSEEEEECT---TSCEE
T ss_pred ------------------------------ccccHHHhhcCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcC---CCEEE
Confidence 012467788889999999999999999999999999999997 78999
Q ss_pred EEEecccccHHHH
Q 003801 756 GILTRHDFMPEHI 768 (794)
Q Consensus 756 GIITr~Dll~~~~ 768 (794)
|+||++|+++...
T Consensus 201 Givt~~dl~~~~~ 213 (296)
T 3ddj_A 201 GIVTVVNAIKQLA 213 (296)
T ss_dssp EEEEHHHHHHHHH
T ss_pred EEEEHHHHHHHHH
Confidence 9999999998765
No 55
>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*
Probab=99.43 E-value=3.5e-13 Score=141.92 Aligned_cols=122 Identities=16% Similarity=0.222 Sum_probs=107.5
Q ss_pred cceeccccccceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCCCCCccc
Q 003801 596 QLTVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNPTVNDAF 675 (794)
Q Consensus 596 ~l~v~diM~~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~~~~~~~ 675 (794)
+.+++|+|+++++++++++++.++++.|.+++++.+||+|++ ++++|+++.+|+.+.+.....
T Consensus 83 ~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~-----~~~~Givt~~dl~~~~~~~~~------------ 145 (280)
T 3kh5_A 83 NEPVREIMEENVITLKENADIDEAIETFLTKNVGGAPIVNDE-----NQLISLITERDVIRALLDKID------------ 145 (280)
T ss_dssp TSBGGGTSBCSCCCEETTCBHHHHHHHHHHTTCSEEEEECTT-----CBEEEEEEHHHHHHHHGGGSC------------
T ss_pred hhhHHHhcCCCCEEECCCCCHHHHHHHHHhCCCCEEEEEcCC-----CEEEEEEEHHHHHHHHhhcCC------------
Confidence 468999999999999999999999999999999999999987 899999999999877653210
Q ss_pred ccchhhhhhccCCCCCCCccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCcEE
Q 003801 676 SQFSAVDFAKRGSGNGDKIEDIELSEEEMEMYVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVM 755 (794)
Q Consensus 676 ~~~~~~d~~~~~~~~~~~i~di~~~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~vv 755 (794)
....++++|++++.++++++++.++.+.|++.+.+++||++ +|+++
T Consensus 146 ------------------------------~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~----~~~~~ 191 (280)
T 3kh5_A 146 ------------------------------ENEVIDDYITRDVIVATPGERLKDVARTMVRNGFRRLPVVS----EGRLV 191 (280)
T ss_dssp ------------------------------TTCBSGGGCBCSCCCBCTTCBHHHHHHHHHHHTCSEEEEEE----TTEEE
T ss_pred ------------------------------CCCCHHHHhCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEE----CCEEE
Confidence 01246788989999999999999999999999999999994 68999
Q ss_pred EEEecccccHHHH
Q 003801 756 GILTRHDFMPEHI 768 (794)
Q Consensus 756 GIITr~Dll~~~~ 768 (794)
|+||++|+++...
T Consensus 192 Givt~~dl~~~~~ 204 (280)
T 3kh5_A 192 GIITSTDFIKLLG 204 (280)
T ss_dssp EEEEHHHHHHHHT
T ss_pred EEEEHHHHHHHHh
Confidence 9999999998754
No 56
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A
Probab=99.40 E-value=4.9e-13 Score=152.16 Aligned_cols=122 Identities=18% Similarity=0.181 Sum_probs=107.5
Q ss_pred ccceeccccccceeEEeccccHHHHHHHHhcC-----CCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCC
Q 003801 595 RQLTVGDVVTAPLQLFHGIEKAGNVVHVLRTT-----RHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNP 669 (794)
Q Consensus 595 ~~l~v~diM~~~vv~l~~~~sv~~a~~~L~~~-----~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~ 669 (794)
...+++++|++++++++++++++++.+.|+++ +++.+||+|++ ++++|+|+.+|++.. . +
T Consensus 153 ~~~~v~~iM~~~~v~v~~~~tv~ea~~~~~~~~~~~~~~~~ipVvd~~-----~~lvGiVt~~Dll~~---~-----~-- 217 (473)
T 2zy9_A 153 EEDEAGGLMTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEK-----GRLKGVLSLRDLIVA---D-----P-- 217 (473)
T ss_dssp CTTBSTTTCBSCEEEECTTCBHHHHHHHHHHHGGGCSEEEEEEEECTT-----SBEEEEEEHHHHHHS---C-----T--
T ss_pred CCCCHHHhCCCCceEeCCCCcHHHHHHHHHhccCCcCceeEEEEECCC-----CcEEEEEEHHHHhcC---C-----C--
Confidence 46789999999999999999999999999986 46899999986 899999999999531 0 0
Q ss_pred CCCcccccchhhhhhccCCCCCCCccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCC
Q 003801 670 TVNDAFSQFSAVDFAKRGSGNGDKIEDIELSEEEMEMYVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKIS 749 (794)
Q Consensus 670 ~~~~~~~~~~~~d~~~~~~~~~~~i~di~~~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~ 749 (794)
..+++++|++++++|++++++.++.++|++++.+.+||||+
T Consensus 218 -------------------------------------~~~v~dim~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVDe-- 258 (473)
T 2zy9_A 218 -------------------------------------RTRVAEIMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDE-- 258 (473)
T ss_dssp -------------------------------------TSBGGGTSBSSCCCEESSSBHHHHHHHHHHHTCSEEEEECT--
T ss_pred -------------------------------------CCcHHHHhCCCCeEEeCCCcHHHHHHHHHhcCCcEEEEEcC--
Confidence 13478899999999999999999999999999999999998
Q ss_pred CCCcEEEEEecccccHHHHHhc
Q 003801 750 NGSPVMGILTRHDFMPEHILAL 771 (794)
Q Consensus 750 ~~g~vvGIITr~Dll~~~~~~~ 771 (794)
+|+++|+||++|+++....+.
T Consensus 259 -~g~lvGiIT~~Dil~~i~~e~ 279 (473)
T 2zy9_A 259 -EGRLVGIVTVDDVLDVLEAEA 279 (473)
T ss_dssp -TSBEEEEEEHHHHHHHHHHHH
T ss_pred -CCEEEEEEehHhhHHHHHHHh
Confidence 899999999999998776543
No 57
>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1
Probab=99.39 E-value=2.1e-13 Score=144.03 Aligned_cols=117 Identities=20% Similarity=0.239 Sum_probs=88.1
Q ss_pred ceeccccccceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCCCCCcccc
Q 003801 597 LTVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNPTVNDAFS 676 (794)
Q Consensus 597 l~v~diM~~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~~~~~~~~ 676 (794)
++++|+|+++++++++++++.++++.|.+++++.+||+|++ ++++|+|+.+|++..+.
T Consensus 1 m~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~pV~d~~-----~~~~Giv~~~dl~~~~~----------------- 58 (282)
T 2yzq_A 1 MRVKTIMTQNPVTITLPATRNYALELFKKYKVRSFPVVNKE-----GKLVGIISVKRILVNPD----------------- 58 (282)
T ss_dssp CBHHHHSEESCCCEESSCC------------CCEEEEECTT-----CCEEEEEESSCC----------------------
T ss_pred CchHHhccCCCeEECCCCcHHHHHHHHHHcCCCeEEEEcCC-----CcEEEEEEHHHHHhhhc-----------------
Confidence 47899999999999999999999999999999999999976 89999999999854321
Q ss_pred cchhhhhhccCCCCCCCccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCcEEE
Q 003801 677 QFSAVDFAKRGSGNGDKIEDIELSEEEMEMYVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMG 756 (794)
Q Consensus 677 ~~~~~d~~~~~~~~~~~i~di~~~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~vvG 756 (794)
...++++|.+++.++++++++.++.++|.+.+.+++||+|+ +|+++|
T Consensus 59 ------------------------------~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~---~~~~~G 105 (282)
T 2yzq_A 59 ------------------------------EEQLAMLVKRDVPVVKENDTLKKAAKLMLEYDYRRVVVVDS---KGKPVG 105 (282)
T ss_dssp -----------------------------------CCCBSCCCEEETTSBHHHHHHHHHHHTCSEEEEECT---TSCEEE
T ss_pred ------------------------------cCCHHHHcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcC---CCEEEE
Confidence 12356788888999999999999999999999999999997 789999
Q ss_pred EEecccccH-HHH
Q 003801 757 ILTRHDFMP-EHI 768 (794)
Q Consensus 757 IITr~Dll~-~~~ 768 (794)
+||++|+++ ...
T Consensus 106 iit~~di~~~~~~ 118 (282)
T 2yzq_A 106 ILTVGDIIRRYFA 118 (282)
T ss_dssp EEEHHHHHHHTTT
T ss_pred EEEHHHHHHHHHh
Confidence 999999987 544
No 58
>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*
Probab=99.38 E-value=7.8e-13 Score=143.47 Aligned_cols=128 Identities=13% Similarity=0.167 Sum_probs=107.1
Q ss_pred cceecc---ccccceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCCCCC
Q 003801 596 QLTVGD---VVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNPTVN 672 (794)
Q Consensus 596 ~l~v~d---iM~~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~~~~ 672 (794)
+.++++ +|.+++.++++++++.++++.|.+++++.+||+|++ ++++|+|+++|++..+....+.
T Consensus 181 ~~~v~~l~~~m~~~~~~v~~~~~~~~~~~~m~~~~~~~~~Vvd~~-----~~~~Giit~~dl~~~~~~~~~~-------- 247 (334)
T 2qrd_G 181 RVPLNQMTIGTWSNLATASMETKVYDVIKMLAEKNISAVPIVNSE-----GTLLNVYESVDVMHLIQDGDYS-------- 247 (334)
T ss_dssp CCBGGGSSCSBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECTT-----CBEEEEEETHHHHHHHTTSCGG--------
T ss_pred hCcHHHhCCcccCCceEECCCCcHHHHHHHHHHcCCcEEEEEcCC-----CcEEEEEEHHHHHHHhhccccc--------
Confidence 456788 589999999999999999999999999999999986 8999999999998766431100
Q ss_pred cccccchhhhhhccCCCCCCCccccccchhhhhcccccccccc------cCCceecCCCCHHHHHHHHHHcCCCEEEEee
Q 003801 673 DAFSQFSAVDFAKRGSGNGDKIEDIELSEEEMEMYVDLHPFAN------ASPYTVVETMSLAKALILFREVGLRHLLVIP 746 (794)
Q Consensus 673 ~~~~~~~~~d~~~~~~~~~~~i~di~~~~~~~~~~idl~~im~------~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd 746 (794)
.....+.++|+ ++++++.+++++.++.++|.+.+.+++||+|
T Consensus 248 --------------------------------~~~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd 295 (334)
T 2qrd_G 248 --------------------------------NLDLSVGEALLKRPANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVD 295 (334)
T ss_dssp --------------------------------GGGSBHHHHHTTCCTTCCCCCEECTTCBHHHHHHHHHHSCCCEEEEEC
T ss_pred --------------------------------cccCcHHHHHhcccccCCCCEEECCCCcHHHHHHHHHHcCCCEEEEEC
Confidence 00123456666 3789999999999999999999999999999
Q ss_pred cCCCCCcEEEEEecccccHHHHHhc
Q 003801 747 KISNGSPVMGILTRHDFMPEHILAL 771 (794)
Q Consensus 747 ~~~~~g~vvGIITr~Dll~~~~~~~ 771 (794)
+ +|+++|+||++|+++....+.
T Consensus 296 ~---~g~l~Giit~~dil~~~~~~~ 317 (334)
T 2qrd_G 296 E---NLKLEGILSLADILNYIIYDK 317 (334)
T ss_dssp T---TCBEEEEEEHHHHHHHHHSCC
T ss_pred C---CCeEEEEEeHHHHHHHHHhcc
Confidence 7 789999999999999876543
No 59
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=99.32 E-value=8e-13 Score=150.77 Aligned_cols=116 Identities=18% Similarity=0.213 Sum_probs=89.5
Q ss_pred ceeccccccceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCCCCCcccc
Q 003801 597 LTVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNPTVNDAFS 676 (794)
Q Consensus 597 l~v~diM~~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~~~~~~~~ 676 (794)
.+++++|.++++++++++++.++.+.|++++|+++||+|++ ++++|+|+.+|+.. ..+
T Consensus 89 k~~~~~m~~d~v~v~~~~tv~ea~~~m~~~~~s~~PVvd~~-----~~lvGiVt~rDL~~-------~~~---------- 146 (496)
T 4fxs_A 89 KIFEAGVVTHPVTVRPEQTIADVMELTHYHGFAGFPVVTEN-----NELVGIITGRDVRF-------VTD---------- 146 (496)
T ss_dssp HHCCC--CBCCCCBCSSSBHHHHHHHHTSSCCCEEEEECSS-----SBEEEEEEHHHHTT-------CCC----------
T ss_pred cccccccccCceEECCCCCHHHHHHHHHHcCCcEEEEEccC-----CEEEEEEEHHHHhh-------ccc----------
Confidence 46688999999999999999999999999999999999986 89999999999931 000
Q ss_pred cchhhhhhccCCCCCCCccccccchhhhhcccccccccc-c-CCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCcE
Q 003801 677 QFSAVDFAKRGSGNGDKIEDIELSEEEMEMYVDLHPFAN-A-SPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPV 754 (794)
Q Consensus 677 ~~~~~d~~~~~~~~~~~i~di~~~~~~~~~~idl~~im~-~-~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~v 754 (794)
...+++++|+ + +++++++++++.++.++|++++++++||||+ +|++
T Consensus 147 -----------------------------~~~~v~diM~p~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe---~G~l 194 (496)
T 4fxs_A 147 -----------------------------LTKSVAAVMTPKERLATVKEGATGAEVQEKMHKARVEKILVVND---EFQL 194 (496)
T ss_dssp -----------------------------TTSBGGGTSEEGGGCCEEECC----CGGGTCC---CCCEEEECT---TSBC
T ss_pred -----------------------------CCCcHHHHhcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcC---CCCE
Confidence 1235788898 4 5899999999999999999999999999998 8999
Q ss_pred EEEEecccccHH
Q 003801 755 MGILTRHDFMPE 766 (794)
Q Consensus 755 vGIITr~Dll~~ 766 (794)
+|+||++|+++.
T Consensus 195 ~GiIT~~DIl~~ 206 (496)
T 4fxs_A 195 KGMITAKDFHKA 206 (496)
T ss_dssp CEEECCC-----
T ss_pred EEeehHhHHHHh
Confidence 999999999975
No 60
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=99.31 E-value=2.8e-12 Score=146.79 Aligned_cols=118 Identities=14% Similarity=0.173 Sum_probs=103.6
Q ss_pred ceeccccccceeEEeccccHHHHHHHHhcCCCCeeEEeeC--CCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCCCCCcc
Q 003801 597 LTVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDE--NPLSETPILYGLILRAHLITLLKKKAFLPTPNPTVNDA 674 (794)
Q Consensus 597 l~v~diM~~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~--~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~~~~~~ 674 (794)
++.+++|.++++++++++++.++.+.|++++++++||+|+ + ++++|+|+.+|+.. . ..
T Consensus 113 ~~~~~~m~~d~v~l~~~~tv~ea~~~m~~~~~s~~pVvd~g~~-----~~lvGiVt~rDl~~---~----~~-------- 172 (511)
T 3usb_A 113 KRSESGVISDPFFLTPEHQVYDAEHLMGKYRISGVPVVNNLDE-----RKLVGIITNRDMRF---I----QD-------- 172 (511)
T ss_dssp HTSSSCSSSSCCCBCTTSBHHHHHHHHHHHCCSEEEEESCTTT-----CBEEEEEEHHHHTT---C----CC--------
T ss_pred hccccccccCCEEECCCCCHHHHHHHHHHcCCcEEEEEecCCC-----CEEEEEEEehHhhh---h----cc--------
Confidence 4567889999999999999999999999999999999997 5 89999999999932 0 00
Q ss_pred cccchhhhhhccCCCCCCCccccccchhhhhccccccccccc-CCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCc
Q 003801 675 FSQFSAVDFAKRGSGNGDKIEDIELSEEEMEMYVDLHPFANA-SPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSP 753 (794)
Q Consensus 675 ~~~~~~~d~~~~~~~~~~~i~di~~~~~~~~~~idl~~im~~-~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~ 753 (794)
...+++++|++ +++++++++++.++.++|++++.+.+||||+ +|+
T Consensus 173 -------------------------------~~~~V~~vM~~~~~vtv~~~~~l~eal~~m~~~~i~~lpVVDe---~g~ 218 (511)
T 3usb_A 173 -------------------------------YSIKISDVMTKEQLITAPVGTTLSEAEKILQKYKIEKLPLVDN---NGV 218 (511)
T ss_dssp -------------------------------SSSBHHHHCCCCCCCCEETTCCHHHHHHHHHHHTCSEEEEECT---TSB
T ss_pred -------------------------------CCCcHHHhcccCCCEEECCCCCHHHHHHHHHHcCCCEEEEEeC---CCC
Confidence 12346778887 8999999999999999999999999999998 899
Q ss_pred EEEEEecccccHHHH
Q 003801 754 VMGILTRHDFMPEHI 768 (794)
Q Consensus 754 vvGIITr~Dll~~~~ 768 (794)
++|+||++|+++...
T Consensus 219 l~GiIT~~Dil~~~~ 233 (511)
T 3usb_A 219 LQGLITIKDIEKVIE 233 (511)
T ss_dssp EEEEEEHHHHHHHHH
T ss_pred EeeeccHHHHHHhhh
Confidence 999999999998764
No 61
>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*
Probab=99.29 E-value=3.8e-12 Score=137.85 Aligned_cols=132 Identities=15% Similarity=0.202 Sum_probs=103.2
Q ss_pred ceeccc--cc-cceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCCCCCc
Q 003801 597 LTVGDV--VT-APLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNPTVND 673 (794)
Q Consensus 597 l~v~di--M~-~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~~~~~ 673 (794)
.+++++ |+ +++.++++++++.++.+.|.+++++.+||+|++ ++++|+|+++|++..+....+..
T Consensus 190 ~~v~~~~v~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~-----~~l~Giit~~dl~~~~~~~~~~~-------- 256 (330)
T 2v8q_E 190 KSLEELQIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEK-----GRVVDIYSKFDVINLAAEKTYNN-------- 256 (330)
T ss_dssp SBHHHHTCSBCSSCCCEETTCBHHHHHHHHHHHCCSEEEEECTT-----SBEEEEEEGGGTGGGGGSSCCCC--------
T ss_pred CCHHHhcccCcCCceEECCCCCHHHHHHHHHHcCCCeEEEECCC-----CcEEEEEEHHHHHHHHhcccccc--------
Confidence 345555 65 788899999999999999999999999999976 89999999999976543221100
Q ss_pred ccccchhhhhhccCCCCCCCccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCc
Q 003801 674 AFSQFSAVDFAKRGSGNGDKIEDIELSEEEMEMYVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSP 753 (794)
Q Consensus 674 ~~~~~~~~d~~~~~~~~~~~i~di~~~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~ 753 (794)
....+.+++ +.+..|.++++++++++++.++.++|.+.+.+++||+|+ +|+
T Consensus 257 --~~~~v~~~~------------------------~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~---~g~ 307 (330)
T 2v8q_E 257 --LDVSVTKAL------------------------QHRSHYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDE---HDV 307 (330)
T ss_dssp --CSSBHHHHG------------------------GGCCSCCCSCCEECTTSBHHHHHHHHHHHTCSEEEEECT---TSB
T ss_pred --ccCcHHHHH------------------------hccccccCCCeEECCCCcHHHHHHHHHHCCCcEEEEEcC---CCc
Confidence 001112221 112235688999999999999999999999999999997 799
Q ss_pred EEEEEecccccHHHHHh
Q 003801 754 VMGILTRHDFMPEHILA 770 (794)
Q Consensus 754 vvGIITr~Dll~~~~~~ 770 (794)
++|+||++|++++...+
T Consensus 308 l~Giit~~Dil~~~~~~ 324 (330)
T 2v8q_E 308 VKGIVSLSDILQALVLT 324 (330)
T ss_dssp EEEEEEHHHHHHHHHSS
T ss_pred EEEEEeHHHHHHHHHhh
Confidence 99999999999877653
No 62
>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C
Probab=99.28 E-value=9.3e-12 Score=134.30 Aligned_cols=132 Identities=8% Similarity=0.105 Sum_probs=102.6
Q ss_pred ceeccccccceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCCCCCcccc
Q 003801 597 LTVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNPTVNDAFS 676 (794)
Q Consensus 597 l~v~diM~~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~~~~~~~~ 676 (794)
+++.++|.++++++++++++.++++.|.+++++.+||+|++..++.++++|+|+.+|+++.+....-.
T Consensus 114 ~~~~~~~~~~~v~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~~~~l~Givt~~di~~~l~~~~~~------------ 181 (323)
T 3t4n_C 114 ERALGVDQLDTASIHPSRPLFEACLKMLESRSGRIPLIDQDEETHREIVVSVLTQYRILKFVALNCRE------------ 181 (323)
T ss_dssp HHHTTC----CCCBCTTSBHHHHHHHHHHHTCSEEEEEEECTTTCCEEEEEEEEHHHHHHHHHHHCGG------------
T ss_pred HHHhCCCCCCceEeCCCCcHHHHHHHHHhCCeeEEEEEecCCCCCccceEEEecHHHHHHHHHhcCCc------------
Confidence 34566778999999999999999999999999999999986211112499999999998876532100
Q ss_pred cchhhhhhccCCCCCCCccccccchhhhhcccccccc---cccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCc
Q 003801 677 QFSAVDFAKRGSGNGDKIEDIELSEEEMEMYVDLHPF---ANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSP 753 (794)
Q Consensus 677 ~~~~~d~~~~~~~~~~~i~di~~~~~~~~~~idl~~i---m~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~ 753 (794)
..+ ....++++ |+++++++.+++++.++.++|.+.+.+++||+|+ +|+
T Consensus 182 ----~~~----------------------~~~~v~~~~~~m~~~~~~v~~~~~~~~~~~~m~~~~~~~~pVvd~---~~~ 232 (323)
T 3t4n_C 182 ----THF----------------------LKIPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDE---NGY 232 (323)
T ss_dssp ----GGG----------------------CCSBGGGTTCSBCTTCCCBCTTSBHHHHHHHHHHHTCSEEEEECT---TCB
T ss_pred ----hhh----------------------hhCcHHHcCCCCCCCcEEECCCCcHHHHHHHHHHcCCCEEEEECC---CCe
Confidence 000 01235666 8889999999999999999999999999999997 799
Q ss_pred EEEEEecccccHHHHH
Q 003801 754 VMGILTRHDFMPEHIL 769 (794)
Q Consensus 754 vvGIITr~Dll~~~~~ 769 (794)
++|+||++|+++....
T Consensus 233 ~~Giit~~dl~~~~~~ 248 (323)
T 3t4n_C 233 LINVYEAYDVLGLIKG 248 (323)
T ss_dssp EEEEEETTHHHHHHHT
T ss_pred EEEEEeHHHHHHHHhh
Confidence 9999999999987654
No 63
>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1
Probab=99.25 E-value=1.1e-11 Score=141.87 Aligned_cols=117 Identities=15% Similarity=0.194 Sum_probs=103.5
Q ss_pred eeccccccceeEEeccccHHHHHHHHhcCCCCeeEEee--CCCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCCCCCccc
Q 003801 598 TVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVID--ENPLSETPILYGLILRAHLITLLKKKAFLPTPNPTVNDAF 675 (794)
Q Consensus 598 ~v~diM~~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd--~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~~~~~~~ 675 (794)
+++|+|.++++++++++++.++++.|++++++.+||+| ++ ++++|+|+.+|++.. ..
T Consensus 91 ~~~~im~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~-----~~lvGivt~~Dl~~~---~~------------- 149 (491)
T 1zfj_A 91 RSENGVIIDPFFLTPEHKVSEAEELMQRYRISGVPIVETLAN-----RKLVGIITNRDMRFI---SD------------- 149 (491)
T ss_dssp HHTTTTSSSCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTT-----CBEEEEEEHHHHHHC---SC-------------
T ss_pred hHHhcCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEeCCC-----CEEEEEEEHHHHhhh---cc-------------
Confidence 34789999999999999999999999999999999999 55 899999999999532 00
Q ss_pred ccchhhhhhccCCCCCCCccccccchhhhhccccccccccc-CCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCcE
Q 003801 676 SQFSAVDFAKRGSGNGDKIEDIELSEEEMEMYVDLHPFANA-SPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPV 754 (794)
Q Consensus 676 ~~~~~~d~~~~~~~~~~~i~di~~~~~~~~~~idl~~im~~-~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~v 754 (794)
...+++++|++ +++++++++++.++.++|++++.+++||||+ ++++
T Consensus 150 ------------------------------~~~~v~~im~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~---~g~l 196 (491)
T 1zfj_A 150 ------------------------------YNAPISEHMTSEHLVTAAVGTDLETAERILHEHRIEKLPLVDN---SGRL 196 (491)
T ss_dssp ------------------------------SSSBTTTSCCCSCCCCEETTCCHHHHHHHHHHTTCSEEEEECT---TSBE
T ss_pred ------------------------------CCCcHHHHcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcC---CCcE
Confidence 02356788988 8999999999999999999999999999998 8999
Q ss_pred EEEEecccccHHHH
Q 003801 755 MGILTRHDFMPEHI 768 (794)
Q Consensus 755 vGIITr~Dll~~~~ 768 (794)
+|+||++|+++...
T Consensus 197 vGivt~~Dil~~~~ 210 (491)
T 1zfj_A 197 SGLITIKDIEKVIE 210 (491)
T ss_dssp EEEEEHHHHHHHHH
T ss_pred EEEEEHHHHHHHHh
Confidence 99999999998765
No 64
>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*
Probab=99.25 E-value=1.9e-11 Score=132.41 Aligned_cols=130 Identities=18% Similarity=0.160 Sum_probs=103.6
Q ss_pred eeccccccceeEEeccccHHHHHHHHhcCCCCeeEEeeC-CCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCCCCCcccc
Q 003801 598 TVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDE-NPLSETPILYGLILRAHLITLLKKKAFLPTPNPTVNDAFS 676 (794)
Q Consensus 598 ~v~diM~~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~-~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~~~~~~~~ 676 (794)
+++++|.++++++++++++.++++.|.+++++.+||+|+ + ++++|+|+.+|+++.+.... ...+
T Consensus 119 ~~~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~-----~~~~Givt~~dl~~~~~~~~-~~~~--------- 183 (330)
T 2v8q_E 119 VYLQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPES-----GNTLYILTHKRILKFLKLFI-TEFP--------- 183 (330)
T ss_dssp HHSSSSCCCCCCBCTTSBHHHHHHHHHHHTCSCEEEECTTT-----CCEEEEECHHHHHHHHHHHS-CSSS---------
T ss_pred HHhhcccCCceEeCCCCCHHHHHHHHHHCCCCeEEEEeCCC-----CcEEEEEcHHHHHHHHHHHh-hccC---------
Confidence 456889999999999999999999999999999999997 5 89999999999988765421 0000
Q ss_pred cchhhhhhccCCCCCCCccccccchhhhhccccccc--ccc-cCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCc
Q 003801 677 QFSAVDFAKRGSGNGDKIEDIELSEEEMEMYVDLHP--FAN-ASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSP 753 (794)
Q Consensus 677 ~~~~~d~~~~~~~~~~~i~di~~~~~~~~~~idl~~--im~-~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~ 753 (794)
..++. ...+++ +|+ ++++++.+++++.++.++|.+.+.+++||+|+ +|+
T Consensus 184 ---~~~~~----------------------~~~v~~~~v~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~---~~~ 235 (330)
T 2v8q_E 184 ---KPEFM----------------------SKSLEELQIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDE---KGR 235 (330)
T ss_dssp ---CCGGG----------------------GSBHHHHTCSBCSSCCCEETTCBHHHHHHHHHHHCCSEEEEECT---TSB
T ss_pred ---chhhh----------------------cCCHHHhcccCcCCceEECCCCCHHHHHHHHHHcCCCeEEEECC---CCc
Confidence 00000 011222 254 77889999999999999999999999999997 789
Q ss_pred EEEEEecccccHHHHHh
Q 003801 754 VMGILTRHDFMPEHILA 770 (794)
Q Consensus 754 vvGIITr~Dll~~~~~~ 770 (794)
++|+||++|+++....+
T Consensus 236 l~Giit~~dl~~~~~~~ 252 (330)
T 2v8q_E 236 VVDIYSKFDVINLAAEK 252 (330)
T ss_dssp EEEEEEGGGTGGGGGSS
T ss_pred EEEEEEHHHHHHHHhcc
Confidence 99999999999866543
No 65
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=99.22 E-value=1.1e-12 Score=149.49 Aligned_cols=116 Identities=16% Similarity=0.155 Sum_probs=3.7
Q ss_pred ceeccccccceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCCCCCcccc
Q 003801 597 LTVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNPTVNDAFS 676 (794)
Q Consensus 597 l~v~diM~~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~~~~~~~~ 676 (794)
.+++++|.++++++++++++.+++++|++++++++||+| + ++++|+|+.+|+....
T Consensus 88 k~~~~~m~~~~v~v~~~~tv~ea~~~m~~~~~s~~pVvd-~-----g~lvGIVt~rDl~~~~------------------ 143 (490)
T 4avf_A 88 KKHETAIVRDPVTVTPSTKIIELLQMAREYGFSGFPVVE-Q-----GELVGIVTGRDLRVKP------------------ 143 (490)
T ss_dssp HHCCC---------------------------------------------------------------------------
T ss_pred cccccCcccCceEeCCCCcHHHHHHHHHHhCCCEEEEEE-C-----CEEEEEEEhHHhhhcc------------------
Confidence 467899999999999999999999999999999999999 5 7999999999984210
Q ss_pred cchhhhhhccCCCCCCCccccccchhhhhcccccccccc-c-CCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCcE
Q 003801 677 QFSAVDFAKRGSGNGDKIEDIELSEEEMEMYVDLHPFAN-A-SPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPV 754 (794)
Q Consensus 677 ~~~~~d~~~~~~~~~~~i~di~~~~~~~~~~idl~~im~-~-~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~v 754 (794)
+...+++++|+ + +++++++++++.++.++|++++++++||||+ +|++
T Consensus 144 ----------------------------~~~~~V~~vMtp~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe---~g~l 192 (490)
T 4avf_A 144 ----------------------------NAGDTVAAIMTPKDKLVTAREGTPLEEMKAKLYENRIEKMLVVDE---NFYL 192 (490)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ----------------------------ccCCcHHHHhccCCCCEEECCCCcHHHHHHHHHHcCCCEEEEEcC---CCcE
Confidence 01235678898 4 6899999999999999999999999999998 8999
Q ss_pred EEEEecccccHHH
Q 003801 755 MGILTRHDFMPEH 767 (794)
Q Consensus 755 vGIITr~Dll~~~ 767 (794)
+|+||++|+++..
T Consensus 193 vGiIT~~Dil~~~ 205 (490)
T 4avf_A 193 RGLVTFRDIEKAK 205 (490)
T ss_dssp -------------
T ss_pred EEEEehHHhhhhc
Confidence 9999999999854
No 66
>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*
Probab=99.21 E-value=1.7e-12 Score=144.73 Aligned_cols=123 Identities=14% Similarity=0.206 Sum_probs=3.8
Q ss_pred eccccccceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCCCCCcccccc
Q 003801 599 VGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNPTVNDAFSQF 678 (794)
Q Consensus 599 v~diM~~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~ 678 (794)
.+..|..+++++.|+.++.|+.+++++++++++||+|+. ..+++|+|+|+.+|+.-.
T Consensus 140 ~e~g~i~dPvtl~P~~Tv~da~~l~~~~~isgvpVvd~g--~~~~kLvGIvT~RD~rf~--------------------- 196 (556)
T 4af0_A 140 YENGFITDPLCLGPDATVGDVLEIKAKFGFCGVPITETG--EPDSKLLGIVTGRDVQFQ--------------------- 196 (556)
T ss_dssp CCC-----------------------------------------------------------------------------
T ss_pred cccCccCCCeEcCCCCCHHHHHHHHHHhCCCcccccccc--CcCCEEEEEEeccccccc---------------------
Confidence 345677888999999999999999999999999999873 113799999999998320
Q ss_pred hhhhhhccCCCCCCCccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCcEEEEE
Q 003801 679 SAVDFAKRGSGNGDKIEDIELSEEEMEMYVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGIL 758 (794)
Q Consensus 679 ~~~d~~~~~~~~~~~i~di~~~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~vvGII 758 (794)
+....++++|+++.+|++++.++++|.++|.++++..+||||+ +++++|+|
T Consensus 197 --------------------------d~~~~V~evMT~~lvt~~~~~~leeA~~iL~~~kieklpVVd~---~g~LvGlI 247 (556)
T 4af0_A 197 --------------------------DAETPIKSVMTTEVVTGSSPITLEKANSLLRETKKGKLPIVDS---NGHLVSLV 247 (556)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------ccceEhhhhcccceEEecCCCCHHHHHHHHHHccccceeEEcc---CCcEEEEE
Confidence 0123478899999999999999999999999999999999998 89999999
Q ss_pred ecccccHHHHHhcCcccc
Q 003801 759 TRHDFMPEHILALNPLLA 776 (794)
Q Consensus 759 Tr~Dll~~~~~~~~~~l~ 776 (794)
|++|+.+. +.+|...
T Consensus 248 T~kDi~k~---~~~p~A~ 262 (556)
T 4af0_A 248 ARSDLLKN---QNYPYAS 262 (556)
T ss_dssp -------------CTTCC
T ss_pred Eechhhhh---hhCCcch
Confidence 99999873 3455543
No 67
>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1
Probab=99.20 E-value=1.6e-12 Score=149.05 Aligned_cols=171 Identities=13% Similarity=0.176 Sum_probs=27.9
Q ss_pred HHHHHHHhCCcchHHHHHHHHHHHHHHHhhhcchHHHHHHHHcCCCcccccc--c----cccccceeccccccceeEEec
Q 003801 539 CVIILELTNNLLLLPMIMLVLLISKTVADAFNGNIYDLIMKAKGFPYLETHV--E----PYMRQLTVGDVVTAPLQLFHG 612 (794)
Q Consensus 539 ~vi~~ElTg~~~~l~pimia~~ia~~v~~~~~~~iy~~~l~~~g~p~l~~~~--~----~~l~~l~v~diM~~~vv~l~~ 612 (794)
+-+..|+|+++.+.+|++.+.+-. .....+.....+..++.++.... + ...+-.+++|+|+++++++++
T Consensus 36 v~~~~eLt~~~~l~iP~is~~m~~-----v~~~~lA~al~~~GglG~i~~~~~~e~~~~~v~~v~~~~~iM~~~~~~v~~ 110 (494)
T 1vrd_A 36 VKIDTRLTRQIRINIPLVSAAMDT-----VTEAALAKALAREGGIGIIHKNLTPDEQARQVSIVKKTENGIIYDPITVTP 110 (494)
T ss_dssp SCCCEESSSSCEESSSEEECCCTT-----TCSHHHHHHHHTTTCEEEECSSSCHHHHHHHHHHHHTC-------------
T ss_pred eEEEehhhCCCccCceeEecchHH-----HhHHHHHHHHHHcCCceEEecCCChHHHHHHHHhhhhHhhcCccCCeEECC
Confidence 345567788777766764332110 01223333333333443332211 1 112234678999999999999
Q ss_pred cccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCCCCCcccccchhhhhhccCCCCCC
Q 003801 613 IEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNPTVNDAFSQFSAVDFAKRGSGNGD 692 (794)
Q Consensus 613 ~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 692 (794)
++++.++++.|++++++.+||+|++ ++++|+|+.+|+... . .
T Consensus 111 ~~tv~ea~~~m~~~~~~~~pVvd~~-----~~lvGivt~~Dl~~~-~--~------------------------------ 152 (494)
T 1vrd_A 111 DMTVKEAIDLMAEYKIGGLPVVDEE-----GRLVGLLTNRDVRFE-K--N------------------------------ 152 (494)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCHHHHHHHHHHcCceEEEEEcCC-----CEEEEEEEHHHHHhh-c--C------------------------------
Confidence 9999999999999999999999986 899999999999531 0 0
Q ss_pred Cccccccchhhhhccccccccccc--CCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCcEEEEEecccccHHHH
Q 003801 693 KIEDIELSEEEMEMYVDLHPFANA--SPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHDFMPEHI 768 (794)
Q Consensus 693 ~i~di~~~~~~~~~~idl~~im~~--~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~vvGIITr~Dll~~~~ 768 (794)
....++++|++ ++.++++++++.++.++|.+.+++++||||+ +|+++|+||++|+++...
T Consensus 153 -------------~~~~v~~im~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~---~g~lvGiIt~~Dll~~~~ 214 (494)
T 1vrd_A 153 -------------LSKKIKDLMTPREKLIVAPPDISLEKAKEILHQHRIEKLPLVSK---DNKLVGLITIKDIMSVIE 214 (494)
T ss_dssp ------------------------------------------------------------------------CHHHHT
T ss_pred -------------CCCcHHHHhCCCCCCeEECCCCCHHHHHHHHHHcCCcEEEEEcC---CCeEEEEEEHHHHHhhhc
Confidence 01346788988 9999999999999999999999999999998 899999999999998754
No 68
>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*
Probab=99.15 E-value=2.6e-12 Score=147.17 Aligned_cols=126 Identities=15% Similarity=0.148 Sum_probs=5.1
Q ss_pred cccceeccc-cccceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCCCCC
Q 003801 594 MRQLTVGDV-VTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNPTVN 672 (794)
Q Consensus 594 l~~l~v~di-M~~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~~~~ 672 (794)
+++++..++ |+++++++++++++.++++.|++++++.+||+|++. ..++++|+|+.+|++.. ..
T Consensus 93 v~~V~~~e~gM~~~~~~v~~~~tv~eal~~m~~~~~s~~pVvd~~~--~~g~lvGiVt~~Dl~~~-~~------------ 157 (503)
T 1me8_A 93 VHAVKNFKAGFVVSDSNVKPDQTFADVLAISQRTTHNTVAVTDDGT--PHGVLLGLVTQRDYPID-LT------------ 157 (503)
T ss_dssp HHHHHTTTC-----------------------------------------------------------------------
T ss_pred HhhhhhcccCcccCCeEECCCCcHHHHHHHHHHcCceEEEEEECCC--cCCeEEEEEEHHHHHhh-hc------------
Confidence 345555666 999999999999999999999999999999998730 01589999999999542 00
Q ss_pred cccccchhhhhhccCCCCCCCccccccchhhhhcccccccccccC--CceecCCCCHHHHHHHHHHcCCCEEEEeecCCC
Q 003801 673 DAFSQFSAVDFAKRGSGNGDKIEDIELSEEEMEMYVDLHPFANAS--PYTVVETMSLAKALILFREVGLRHLLVIPKISN 750 (794)
Q Consensus 673 ~~~~~~~~~d~~~~~~~~~~~i~di~~~~~~~~~~idl~~im~~~--p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~ 750 (794)
+...+++++|+++ ++++++++++.+++++|++++.+++||||+
T Consensus 158 --------------------------------~~~~~V~diM~~~~~~~tv~~~~sl~ea~~~m~~~~i~~lpVVDe--- 202 (503)
T 1me8_A 158 --------------------------------QTETKVSDMMTPFSKLVTAHQDTKLSEANKIIWEKKLNALPIIDD--- 202 (503)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------cccCcHHHHhCCCCCCEEEcCCCcHHHHHHHHHHcCCCEEEEEcC---
Confidence 0123467889887 999999999999999999999999999998
Q ss_pred CCcEEEEEecccccHHHHH
Q 003801 751 GSPVMGILTRHDFMPEHIL 769 (794)
Q Consensus 751 ~g~vvGIITr~Dll~~~~~ 769 (794)
+|+++|+||++|+++....
T Consensus 203 ~g~lvGiIT~~Dil~~~~~ 221 (503)
T 1me8_A 203 DQHLRYIVFRKDYDRSQVC 221 (503)
T ss_dssp -------------------
T ss_pred CCeEEEEEEecHHHHhhhc
Confidence 8999999999999987764
No 69
>1ots_A Voltage-gated CLC-type chloride channel ERIC; CLC chloride channel, FAB complex, membrane protein; 2.51A {Escherichia coli} SCOP: f.20.1.1 PDB: 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A 2htl_A 3ejy_A 2ht2_A 2fed_A 2fec_A 1otu_A 3ejz_A 2ht4_A 2htk_A 2ht3_A 1ott_A 2h2s_A 3det_A 2ez0_A 3nmo_A ...
Probab=99.14 E-value=7.8e-10 Score=125.25 Aligned_cols=185 Identities=19% Similarity=0.273 Sum_probs=131.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHhhcccccCCCHHHHHH
Q 003801 98 SLCFLIGLIVGLIGFLNNLAVENIAGTKFVVTSNMMLANKFGMAFLSFSIPNLVLTLFASIVTATVAPVAAGSGIPEVKA 177 (794)
Q Consensus 98 ~~~~liGv~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~p~a~GsGipev~~ 177 (794)
...+++|+++|+++.+|+....+.++++.+.. ..+.+ . ++..+++.+++.+.+ .++.|...|.|...++.
T Consensus 253 ~~~illGi~~Gl~g~~f~~~~~~~~~~~~~~~-----~~~~~-~---~~~~~~i~gl~~g~l-~~~~P~~lG~G~~~i~~ 322 (465)
T 1ots_A 253 WLYLILGIIFGIFGPIFNKWVLGMQDLLHRVH-----GGNIT-K---WVLMGGAIGGLCGLL-GFVAPATSGGGFNLIPI 322 (465)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----TTCHH-H---HHHHHHHHHHHHHHH-HHHCGGGSSCSTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----cCCch-h---HHHHHHHHHHHHHHH-HHHhHhhcCChHHHHHH
Confidence 45689999999999999999888876553321 11111 1 112233444555544 45679999999999999
Q ss_pred HHcCCCCCCcchhHHHHHHHHHHHhhhccccccCCchhHHHHHHHHHHHhhccCccccccchhhhcccCChhhhhhHHHH
Q 003801 178 YLNGVDAPGILSFRTLVIKIIGSISAVSSSLLVGKAGPMVHTGACVASLLGQGGSKKYGLTWKWLRFFKNDRDRRDFVTC 257 (794)
Q Consensus 178 ~lng~~~~~~~~~~tl~~K~~~~~~sv~sGlsvG~EGP~vhiGa~igs~l~~~~s~~~~l~~~~l~~f~~~~~~r~lv~~ 257 (794)
.+++. .+-..-.-.++.|++.+.+++++|.+.|.-.|+.-+||++|..+++. ++. ++.. ...+...+..+
T Consensus 323 ~~~~~-~~~~~l~~~~~~K~~~t~lt~gsG~~GGif~Psl~iGA~~G~~~g~~----~~~---~~p~--~~~~~~~~alv 392 (465)
T 1ots_A 323 ATAGN-FSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMV----AVE---LFPQ--YHLEAGTFAIA 392 (465)
T ss_dssp HHHTC-SCHHHHHHHHHHHHHHHHHHHHTTCSSBSHHHHHHHHHHHHHHHHHH----HHH---HCGG--GTCCHHHHHHH
T ss_pred HHcCC-chHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHHHHHHHHHHHHH----HHH---HCCc--ccccHHHHHHH
Confidence 88872 11112334568899999999999999999999999999999998872 110 1111 12456689999
Q ss_pred hhhhhhhhhhcccchhHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHH
Q 003801 258 GSAAGIAAAFRAPVGGLLFAIEEMASWWRSALLWRAFFTTAIVAILLR 305 (794)
Q Consensus 258 GaaAGvaaaF~APigGvLFalE~~~~~~~~~~~~~~f~~~~va~~v~~ 305 (794)
||||-++++.|+|+.+++..+|.+.++ ..+.+.++++++|..+.+
T Consensus 393 Gmaa~~a~v~raPlt~ivlv~Eltg~~---~~llpl~ia~~iA~~v~~ 437 (465)
T 1ots_A 393 GMGALLAASIRAPLTGIILVLEMTDNY---QLILPMIITGLGATLLAQ 437 (465)
T ss_dssp HHTHHHHHTSCCHHHHHHHHHHHHCCG---GGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCH---HHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998653 334455555555555444
No 70
>4ene_A CLC-EC1, H(+)/CL(-) exchange transporter CLCA; membrane protein, coupled ION transporter, cell membrane, TR protein; HET: DMU MAL; 2.40A {Escherichia coli k-12} PDB: 1ots_A 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A 2fed_A 2fec_A 1otu_A 2htl_A 2ht2_A 3ejy_A 1ott_A 2h2s_A 4fg6_A 2ht4_A 4ftp_A 3ejz_A 2ht3_A 2htk_A ...
Probab=99.14 E-value=5.4e-10 Score=125.84 Aligned_cols=185 Identities=19% Similarity=0.259 Sum_probs=131.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHhhcccccCCCHHHHHHH
Q 003801 99 LCFLIGLIVGLIGFLNNLAVENIAGTKFVVTSNMMLANKFGMAFLSFSIPNLVLTLFASIVTATVAPVAAGSGIPEVKAY 178 (794)
Q Consensus 99 ~~~liGv~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~p~a~GsGipev~~~ 178 (794)
..+++|+++|+++.+|+..+.+.++++.... .. . +..++....+.+++.+. +.++.|...|+|...++..
T Consensus 239 ~~illGi~~Gl~g~~f~~~~~~~~~~~~~~~-----~~-~---~~~~~~~~~l~g~~~g~-l~~~~p~~~G~G~~~i~~~ 308 (446)
T 4ene_A 239 LYLILGIIFGIFGPIFNKWVLGMQDLLHRVH-----GG-N---ITKWVLMGGAIGGLCGL-LGFVAPATSGGGFNLIPIA 308 (446)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----TT-C---HHHHHHHHHHHHHHHHH-HHHHCGGGSSCCSTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----cc-c---hhHHHHHHHHHHHHHHH-HHHHhHhhcCCcHHHHHHH
Confidence 4678999999999999999888776543321 11 1 11122222233344443 3456799999999999888
Q ss_pred HcCCCCCCcchhHHHHHHHHHHHhhhccccccCCchhHHHHHHHHHHHhhccCccccccchhhhcccCChhhhhhHHHHh
Q 003801 179 LNGVDAPGILSFRTLVIKIIGSISAVSSSLLVGKAGPMVHTGACVASLLGQGGSKKYGLTWKWLRFFKNDRDRRDFVTCG 258 (794)
Q Consensus 179 lng~~~~~~~~~~tl~~K~~~~~~sv~sGlsvG~EGP~vhiGa~igs~l~~~~s~~~~l~~~~l~~f~~~~~~r~lv~~G 258 (794)
++|.. +-..-.-.++.|++.+.+++++|.+.|.-.|+.-+||++|..+++. ... ++.. ...+-..+..+|
T Consensus 309 ~~~~~-~~~~L~~~~~~K~~~t~lt~gsG~~GGif~Psl~iGA~~G~~~g~~----~~~---~~p~--~~~~~~~~a~vG 378 (446)
T 4ene_A 309 TAGNF-SMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMV----AVE---LFPQ--YHLEAGTFAIAG 378 (446)
T ss_dssp HTTCS-CHHHHHHHHHHHHHHHHHHHTTTCSSBSHHHHHHHHHHHHHHHHHH----HHH---HCGG--GTCCHHHHHHHH
T ss_pred HcCCc-hHHHHHHHHHHHHHHHHHHHccCCCcchhHHHHHHHHHHHHHHHHH----HHH---hCCc--cccCHHHHHHHH
Confidence 88632 1111123568899999999999999999999999999999998862 110 1111 124566789999
Q ss_pred hhhhhhhhhcccchhHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHH
Q 003801 259 SAAGIAAAFRAPVGGLLFAIEEMASWWRSALLWRAFFTTAIVAILLRA 306 (794)
Q Consensus 259 aaAGvaaaF~APigGvLFalE~~~~~~~~~~~~~~f~~~~va~~v~~~ 306 (794)
+||-++++-|+|+.+++..+|.+.++ ..+.+.++++++|..+.+.
T Consensus 379 maa~~a~~~~aPlt~~vl~~Eltg~~---~~~lpl~ia~~ia~~v~~~ 423 (446)
T 4ene_A 379 MGALLAASIRAPLTGIILVLEMTDNY---QLILPMIITGLGATLLAQF 423 (446)
T ss_dssp HTHHHHHHTCCHHHHHHHHHHHHCCG---GGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccHHHHHHHHHHHHCCh---hHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998752 4455666667666666553
No 71
>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*
Probab=99.13 E-value=1.6e-10 Score=125.21 Aligned_cols=129 Identities=9% Similarity=0.144 Sum_probs=100.8
Q ss_pred ccccccce--eEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCCCCCccccc
Q 003801 600 GDVVTAPL--QLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNPTVNDAFSQ 677 (794)
Q Consensus 600 ~diM~~~v--v~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~ 677 (794)
+++|.++. +++++++++.++++.|.+++++.+||+|++...+.+.++|+|+.+|++..+......
T Consensus 110 ~~im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~~~~~Givt~~dl~~~~~~~~~~------------- 176 (334)
T 2qrd_G 110 RKIGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRILKFISMNCKE------------- 176 (334)
T ss_dssp HHHTCSCSSCCCBCTTSBHHHHHHHHHHSCCSEEEEEEEETTTTEEEEEEEEEHHHHHHHHHHHCGG-------------
T ss_pred HhhccCCCceeeeCCCCcHHHHHHHHHHCCceEEEEEeCCCCcCccceEEEeeHHHHHHHHHhhccc-------------
Confidence 35677766 899999999999999999999999999975100011299999999998876532100
Q ss_pred chhhhhhccCCCCCCCccccccchhhhhccccccc---ccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCcE
Q 003801 678 FSAVDFAKRGSGNGDKIEDIELSEEEMEMYVDLHP---FANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPV 754 (794)
Q Consensus 678 ~~~~d~~~~~~~~~~~i~di~~~~~~~~~~idl~~---im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~v 754 (794)
. +. ....+++ +|+++++++++++++.++.++|.+.+.+++||+|+ +|++
T Consensus 177 ~---~~----------------------~~~~v~~l~~~m~~~~~~v~~~~~~~~~~~~m~~~~~~~~~Vvd~---~~~~ 228 (334)
T 2qrd_G 177 T---AM----------------------LRVPLNQMTIGTWSNLATASMETKVYDVIKMLAEKNISAVPIVNS---EGTL 228 (334)
T ss_dssp G---GG----------------------CCCBGGGSSCSBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECT---TCBE
T ss_pred h---hh----------------------hhCcHHHhCCcccCCceEECCCCcHHHHHHHHHHcCCcEEEEEcC---CCcE
Confidence 0 00 0122344 58899999999999999999999999999999997 7899
Q ss_pred EEEEecccccHHHHH
Q 003801 755 MGILTRHDFMPEHIL 769 (794)
Q Consensus 755 vGIITr~Dll~~~~~ 769 (794)
+|+||++|+++....
T Consensus 229 ~Giit~~dl~~~~~~ 243 (334)
T 2qrd_G 229 LNVYESVDVMHLIQD 243 (334)
T ss_dssp EEEEETHHHHHHHTT
T ss_pred EEEEEHHHHHHHhhc
Confidence 999999999986543
No 72
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=99.12 E-value=2.5e-12 Score=148.02 Aligned_cols=176 Identities=11% Similarity=0.134 Sum_probs=98.0
Q ss_pred HHHHHHHHhCCcchHHHHHHHHHHHHHHHhhhcchHHHHHHHHcCCCcccc--cccccc----ccceeccccccceeEEe
Q 003801 538 LCVIILELTNNLLLLPMIMLVLLISKTVADAFNGNIYDLIMKAKGFPYLET--HVEPYM----RQLTVGDVVTAPLQLFH 611 (794)
Q Consensus 538 ~~vi~~ElTg~~~~l~pimia~~ia~~v~~~~~~~iy~~~l~~~g~p~l~~--~~~~~l----~~l~v~diM~~~vv~l~ 611 (794)
.+.|..|+|+++.+.+|+|.+.+-.. -...+.+.....++..+++. .++... +-.+++|+|.+++++++
T Consensus 48 ~v~l~~eLt~~~~~~iP~vsa~md~~-----t~~~la~~ia~~gg~gii~~~~t~e~~~~~v~~v~~~~~im~~~~~~v~ 122 (514)
T 1jcn_A 48 EVDLTSALTRKITLKTPLISSPMDTV-----TEADMAIAMALMGGIGFIHHNCTPEFQANEVRKVKNFEQGFITDPVVLS 122 (514)
T ss_dssp GCBCCEESSSSCEESSCEEECCCTTT-----CSHHHHHHHHHTTCEEEECCSSCHHHHHHHHHHHHTCCTTSCSSCCCCC
T ss_pred eeEEEeeccCCeeEeceEEEEehhhh-----hhhhHHHHHHhcCCeeEEecCCCHHHHHHHHHhhhhhhhccccCCEEEC
Confidence 45666799999988888775421110 02234444444455444432 111111 22478899999999999
Q ss_pred ccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCCCCCcccccchhhhhhccCCCCC
Q 003801 612 GIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNPTVNDAFSQFSAVDFAKRGSGNG 691 (794)
Q Consensus 612 ~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 691 (794)
+++++.++.+.|.+++++.+||+|++. ..++++|+|+++|+......
T Consensus 123 ~~~tv~ea~~~m~~~~~~~~pVvd~~~--~~~~lvGiVt~~Dl~~~~~~------------------------------- 169 (514)
T 1jcn_A 123 PSHTVGDVLEAKMRHGFSGIPITETGT--MGSKLVGIVTSRDIDFLAEK------------------------------- 169 (514)
T ss_dssp C-----------------CEESCC----------CCEECTTTTC------------------------------------
T ss_pred CCCCHHHHHHHHHhcCCCEEEEEeCCC--cCCEEEEEEEHHHHHhhhhc-------------------------------
Confidence 999999999999999999999999720 01799999999998432100
Q ss_pred CCccccccchhhhhccccccccccc--CCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCcEEEEEecccccHHH
Q 003801 692 DKIEDIELSEEEMEMYVDLHPFANA--SPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHDFMPEH 767 (794)
Q Consensus 692 ~~i~di~~~~~~~~~~idl~~im~~--~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~vvGIITr~Dll~~~ 767 (794)
+...+++++|++ +++++++++++.++.++|.+.+.+++||||+ +|+++|+||++|+++..
T Consensus 170 -------------~~~~~v~~vm~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVVd~---~g~lvGiIt~~Dll~~~ 231 (514)
T 1jcn_A 170 -------------DHTTLLSEVMTPRIELVVAPAGVTLKEANEILQRSKKGKLPIVND---CDELVAIIARTDLKKNR 231 (514)
T ss_dssp ------------------------CCBCCCCEETTCCSTTTTTHHHHHTCSCCCEESS---SSCCC----CCCCSSCC
T ss_pred -------------cCCCCHHHHhCCCCCCeEECCCCCHHHHHHHHHHcCCCcccEECC---CCeEEEEEEHHHHHHHh
Confidence 012346788988 9999999999999999999999999999998 89999999999999854
No 73
>3nd0_A SLL0855 protein; CLC family CL-/H+ antiporter, CLC_EC1 homolog, transport protein; 3.20A {Synechocystis} PDB: 3q17_A
Probab=99.07 E-value=1.4e-09 Score=122.98 Aligned_cols=180 Identities=15% Similarity=0.184 Sum_probs=128.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHhhcccccCCCHHHHHHH
Q 003801 99 LCFLIGLIVGLIGFLNNLAVENIAGTKFVVTSNMMLANKFGMAFLSFSIPNLVLTLFASIVTATVAPVAAGSGIPEVKAY 178 (794)
Q Consensus 99 ~~~liGv~~Gl~a~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~p~a~GsGipev~~~ 178 (794)
..+++|+++|+++.+|+....+.++++... ...+++. .+++.+++.+. +.++.|...|+|...++..
T Consensus 249 ~~illGi~~Gl~g~lf~~~~~~~~~~~~~~---------~~~~~~~---~~~l~g~~~g~-l~~~~p~~~G~G~~~i~~~ 315 (466)
T 3nd0_A 249 MFIILGILFGVMGYTFNRGLFKVLDWFDRL---------PPLATKW---KGFLLGSIIGI-LSLFPLPLTDGGDNAVLWA 315 (466)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---------CHHHHHH---HHHHHHHHHHH-HTTSSSSCSSSSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---------ccccHHH---HHHHHHHHHHH-HHHHHHHHcCCcHHHHHHH
Confidence 467899999999999999887776543211 0011121 22344444443 3467899999999999998
Q ss_pred HcCCCCCCcchhHHHHHHHHHHHhhhccccccCCchhHHHHHHHHHHHhhccCccccccchhhhcccCChhhhhhHHHHh
Q 003801 179 LNGVDAPGILSFRTLVIKIIGSISAVSSSLLVGKAGPMVHTGACVASLLGQGGSKKYGLTWKWLRFFKNDRDRRDFVTCG 258 (794)
Q Consensus 179 lng~~~~~~~~~~tl~~K~~~~~~sv~sGlsvG~EGP~vhiGa~igs~l~~~~s~~~~l~~~~l~~f~~~~~~r~lv~~G 258 (794)
++|.. +-..-.-.++.|++.+.+++++|.+.|.-.|+.-+||++|..+++. ... +++. ...+-..+..+|
T Consensus 316 ~~~~~-~~~~L~~~~~~K~~~t~lt~gsG~~GGif~Psl~iGA~~G~~~g~~----~~~---~~p~--~~~~~~~~a~vG 385 (466)
T 3nd0_A 316 FNSQS-HFSTLILVFCGRFLLTLICYGSGAIGGIFAPMLGIASIVSVAMARH----FHL---LFPS--QIPEPAVMAIAG 385 (466)
T ss_dssp TTSCC-CHHHHHHHHHHHHHHHHHHHHTTCBCCSHHHHHHHHHHHHHHHHHH----HHH---HCTT--TCSSTHHHHHHT
T ss_pred HcCCc-cHHHHHHHHHHHHHHHHHHHhCCCCCceehHHHHHHHHHHHHHHHH----HHH---hCCc--cccCHHHHHHHH
Confidence 88732 1111234678999999999999999999999999999999998862 110 1110 134567899999
Q ss_pred hhhhhhhhhcccchhHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH
Q 003801 259 SAAGIAAAFRAPVGGLLFAIEEMASWWRSALLWRAFFTTAIVAILL 304 (794)
Q Consensus 259 aaAGvaaaF~APigGvLFalE~~~~~~~~~~~~~~f~~~~va~~v~ 304 (794)
+||-++++-|+|+.+++..+|.+.++ ..+.+.++++++|..+.
T Consensus 386 maa~~a~v~~aPlt~ivlv~Eltg~~---~~~lpl~ia~~iA~~v~ 428 (466)
T 3nd0_A 386 MGALVAATVRAPLTAILLTIEMTDNY---FVILPLLVTCLVASVVA 428 (466)
T ss_dssp TSHHHHHHHSCHHHHHHHHHHTTCCC---TTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHCCh---HHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998753 33445555555555544
No 74
>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1
Probab=98.99 E-value=4.3e-11 Score=136.68 Aligned_cols=168 Identities=15% Similarity=0.232 Sum_probs=24.0
Q ss_pred HHHHHHHHhCCcchHHHHHHHHHHHHHHHhhhcchHHHHHHHHcCCCccccc------cccccccceeccccccceeEEe
Q 003801 538 LCVIILELTNNLLLLPMIMLVLLISKTVADAFNGNIYDLIMKAKGFPYLETH------VEPYMRQLTVGDVVTAPLQLFH 611 (794)
Q Consensus 538 ~~vi~~ElTg~~~~l~pimia~~ia~~v~~~~~~~iy~~~l~~~g~p~l~~~------~~~~l~~l~v~diM~~~vv~l~ 611 (794)
.+.+..|+|+++.+..|+|.+.+.+ ++ ...+....-+..|+..++.. .+...+-.+.+|+|..++++++
T Consensus 33 ~v~l~t~lt~~l~l~~PIi~a~m~~--vt---~~ela~ava~~GglG~i~~~~~~e~~~~~I~~v~~~~~~m~~~~~~v~ 107 (486)
T 2cu0_A 33 DVDVSTRITPNVKLNIPILSAAMDT--VT---EWEMAVAMAREGGLGVIHRNMGIEEQVEQVKRVKRAERLIVEDVITIA 107 (486)
T ss_dssp TCBCCEEEETTEEESSSEEECCCTT--TC---SHHHHHHHHHTTCEEEECSSSCHHHHHHHHHHHHTCC-----------
T ss_pred eEEEEeeecCCcccccceEEcccee--ec---HHHHHHHHHhcCCceeecCCCCHHHHHHHHHhhcchhhccccCceEEC
Confidence 4455678888888877877543221 00 11111111122222222210 1111122356788999999999
Q ss_pred ccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCCCCCcccccchhhhhhccCCCCC
Q 003801 612 GIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNPTVNDAFSQFSAVDFAKRGSGNG 691 (794)
Q Consensus 612 ~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 691 (794)
+++++.++.+.|++++++.+||+|+ ++++|+|+.+|++. + .
T Consensus 108 ~~~tv~ea~~~~~~~~~~~~pVvd~------~~lvGivt~~Dl~~---~------~------------------------ 148 (486)
T 2cu0_A 108 PDETVDFALFLMEKHGIDGLPVVED------EKVVGIITKKDIAA---R------E------------------------ 148 (486)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCHHHHHHHHHHcCCcEEEEEEC------CEEEEEEEHHHhcc---C------C------------------------
Confidence 9999999999999999999999987 58999999999843 0 0
Q ss_pred CCccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCcEEEEEecccccHHH
Q 003801 692 DKIEDIELSEEEMEMYVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHDFMPEH 767 (794)
Q Consensus 692 ~~i~di~~~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~vvGIITr~Dll~~~ 767 (794)
..+++++|+++++++++++++.+++++|++.+.+.+||||+ +|+++|+||++|+++..
T Consensus 149 ---------------~~~v~~im~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVde---~g~lvGiiT~~Dil~~~ 206 (486)
T 2cu0_A 149 ---------------GKLVKELMTKEVITVPESIEVEEALKIMIENRIDRLPVVDE---RGKLVGLITMSDLVARK 206 (486)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred ---------------CCCHHHHccCCCeEECCcCcHHHHHHHHHHcCCCEEEEEec---CCeEEEEEEHHHHHHhh
Confidence 12467789888999999999999999999999999999998 89999999999999864
No 75
>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}
Probab=98.75 E-value=7.9e-08 Score=113.14 Aligned_cols=191 Identities=13% Similarity=0.033 Sum_probs=128.8
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC----Ccc-hHHHHHHHHHHHHHHH-hchhhhccCCCCC
Q 003801 335 SYHLADVPLVLLLGVVGGILGSLYNFLLDKVLRIYNFINEKG----IAP-KIFLACTISILTSCLL-FGLPWLASCRPCP 408 (794)
Q Consensus 335 ~~~~~~l~~~illGv~~Gl~g~~f~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~-~~~p~~~~c~~~~ 408 (794)
+|....+.+.+++|++.|+++.+|.....++.+++..+.... .+. .++.+++++++.+.+. ++.|...
T Consensus 5 ~~~~r~~~~~~lvGi~~gl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~------ 78 (632)
T 3org_A 5 MYLLRLVCFLTLLGVTAALFIFAVDLAVHGLEELRMKISRLAGRFAGYILYVVSGVALCLLSTFWCAVLSTEAE------ 78 (632)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCccC------
Confidence 455667778889999999999999999998887764322110 111 1233455555555443 5555541
Q ss_pred CCCCCcCCCCCCCCcccccccCCCccchhhhhhcCCcHHHHHhhhccCC---CCchhhHHHHHHHHHHHHHHHHhhcCCC
Q 003801 409 SDASEACPTIGRSGNYKKFQCAPGYYNDLASLIFNTNDDAIRNLFSKDT---DKEFQHSSMLIFFVTCFSLSVLSYGIVA 485 (794)
Q Consensus 409 ~~~~~~~p~~g~~g~~~~~~c~~g~y~~la~l~~~~~~~~i~~lf~~~~---~~~~~~~~l~~~~~~k~~~t~~t~g~g~ 485 (794)
| +|. ..++..+++.. .+...+. .++.|++.+.+|.|+|.
T Consensus 79 ----------G-sGI-----------------------p~v~~~l~g~~~~~~~~~~~~----~~~~K~~~~~l~igsG~ 120 (632)
T 3org_A 79 ----------G-SGL-----------------------PQMKSILSGFYDKMRSALELR----VLFAKALGLICAIGGGL 120 (632)
T ss_dssp ----------B-CSH-----------------------HHHHHHTTTTHHHHGGGGSHH----HHHHHHHHHHHHHHTTC
T ss_pred ----------C-CCH-----------------------HHHHHHHhCccccccccccHH----HHHHHHHHHHHHHhcCC
Confidence 1 121 11222222100 0111122 34679999999999999
Q ss_pred CcccchHHHHHHHHHhHHHHH--Hhcc--ccCcchHHHHHHHHhhhhhhhcchhhHHHHHHHHHhCC-c--chHHHHHHH
Q 003801 486 PAGLFVPAIVTGASYGRFVGM--LVGS--HSNLNHGLYAVLGAASFLGGSMRMTVSLCVIILELTNN-L--LLLPMIMLV 558 (794)
Q Consensus 486 ~gG~f~Psl~iGa~~G~l~g~--~~~~--~~~~~~~~~alvGaaa~l~g~~r~pls~~vi~~ElTg~-~--~~l~pimia 558 (794)
+.|.-.|++-+||++|..++. .++. ....+...+..+||||-+|++.++|++.+++.+|.... + ..+.|.+++
T Consensus 121 s~GrEGP~vqiGa~ig~~~~~~~~f~~~~~~~~~~r~ll~aGaaAG~aaaF~aPlaGvlFalE~~~~~~~~~~~~~~~~a 200 (632)
T 3org_A 121 PVGWEGPNVHIACIIAHQFYRLGVFKELCTDRALRLQTLAAACAVGLASSFGAPLGGVLYSIETIASFYLVQAFWKGVLS 200 (632)
T ss_dssp SCBSHHHHHHHHHHHHHHHTTSHHHHHHHHSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHTCSEEETTHHHHHHHH
T ss_pred CccccchHHHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHHHHHHhCCccHhHHHHHHHHHHHHhHHHHHHHHHH
Confidence 999999999999999998887 5542 11224457889999999999999999999999998764 3 346677888
Q ss_pred HHHHHHHHhhh
Q 003801 559 LLISKTVADAF 569 (794)
Q Consensus 559 ~~ia~~v~~~~ 569 (794)
+++|..+.+.+
T Consensus 201 s~~a~~v~~~~ 211 (632)
T 3org_A 201 ALSGAIVYELL 211 (632)
T ss_dssp HHHHHHHTTC-
T ss_pred HHHHHHHHHHh
Confidence 88888887755
No 76
>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}
Probab=98.53 E-value=1.6e-07 Score=77.55 Aligned_cols=46 Identities=9% Similarity=0.237 Sum_probs=42.2
Q ss_pred eeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHH
Q 003801 607 LQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLL 658 (794)
Q Consensus 607 vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL 658 (794)
++++++++++.++.+.|.+++++++||+|+ ++++|+|+.+|+.+.+
T Consensus 2 ~vtv~p~~tv~ea~~~M~~~~i~~~~V~d~------~~lvGIvT~~Di~~~~ 47 (70)
T 3ghd_A 2 AIVVQPKDTVDRVAKILSRNKAGSAVVMEG------DEILGVVTERDILDKV 47 (70)
T ss_dssp EEEECTTCBHHHHHHHHHHTTCSEEEEEET------TEEEEEEEHHHHHHHT
T ss_pred CEEECCCCcHHHHHHHHHHcCCCEEEEEEC------CEEEEEEEHHHHHHHH
Confidence 678999999999999999999999999986 7999999999997543
No 77
>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}
Probab=98.36 E-value=4.4e-07 Score=88.15 Aligned_cols=57 Identities=21% Similarity=0.257 Sum_probs=53.8
Q ss_pred ccccccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCcEEEEEecccccHH
Q 003801 707 YVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHDFMPE 766 (794)
Q Consensus 707 ~idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~vvGIITr~Dll~~ 766 (794)
.+.++++|++++++|.+++++.+|.++|.+++.+++||+|+ +|+++|+||.+|+++.
T Consensus 17 ~~~V~diM~~~v~~v~~~~tl~~a~~~m~~~~~~~~pVvd~---~g~lvGiit~~Dll~~ 73 (170)
T 4esy_A 17 QVPIRDILTSPVVTVREDDTLDAVAKTMLEHQIGCAPVVDQ---NGHLVGIITESDFLRG 73 (170)
T ss_dssp TSBGGGGCCSCCCCEETTSBHHHHHHHHHHTTCSEEEEECT---TSCEEEEEEGGGGGGG
T ss_pred CCCHHHhcCCCCcEECCcCcHHHHHHHHHHcCCeEEEEEcC---CccEEEEEEHHHHHHH
Confidence 46789999999999999999999999999999999999998 8999999999999874
No 78
>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1
Probab=98.32 E-value=7.2e-07 Score=90.26 Aligned_cols=102 Identities=17% Similarity=0.182 Sum_probs=55.4
Q ss_pred cceeccccccceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhccCCCCCCCCCCccc
Q 003801 596 QLTVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNPTVNDAF 675 (794)
Q Consensus 596 ~l~v~diM~~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~~~~~~~~~~~~~~~ 675 (794)
+.+++|+|+++++++++++++.++.+.|.+++++.+||+|++ ++++|+|+++|++..+.......+.
T Consensus 71 ~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-----g~lvGiit~~Dil~~~~~~~~~~~~-------- 137 (213)
T 1vr9_A 71 DSSVFNKVSLPDFFVHEEDNITHALLLFLEHQEPYLPVVDEE-----MRLKGAVSLHDFLEALIEALAMDVP-------- 137 (213)
T ss_dssp TSBSGGGCBCTTCCEETTSBHHHHHHHHHHCCCSEEEEECTT-----CBEEEEEEHHHHHHHHHHSCC------------
T ss_pred CCcHHHHccCCCEEECCCCcHHHHHHHHHHhCCCEEEEEcCC-----CEEEEEEEHHHHHHHHHHHhcCCCC--------
Confidence 346999999999999999999999999999999999999986 8999999999998876542200000
Q ss_pred ccchhhhhhccCCCCCCCccccccchhhhhcccccccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeec
Q 003801 676 SQFSAVDFAKRGSGNGDKIEDIELSEEEMEMYVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPK 747 (794)
Q Consensus 676 ~~~~~~d~~~~~~~~~~~i~di~~~~~~~~~~idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~ 747 (794)
. -.+. +.+.....++.++.++|.+.+.+.++|++.
T Consensus 138 --------~-----------------------~~l~------~~~~~~~~~l~~~~~~l~~~~~~~l~V~~~ 172 (213)
T 1vr9_A 138 --------G-----------------------IRFS------VLLEDKPGELRKVVDALALSNINILSVITT 172 (213)
T ss_dssp ------------------------------------------------------------------------
T ss_pred --------c-----------------------EEEE------EEeCCCCccHHHHHHHHHHCCCcEEEEEEE
Confidence 0 0000 011123335999999999999999999864
No 79
>3fio_A A cystathionine beta-synthase domain protein fused to A Zn-ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus} PDB: 3ghd_A
Probab=98.24 E-value=2.1e-06 Score=69.97 Aligned_cols=48 Identities=8% Similarity=0.211 Sum_probs=43.6
Q ss_pred ceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHH
Q 003801 606 PLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLK 659 (794)
Q Consensus 606 ~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~ 659 (794)
+++++++++++.++++.|++++++.+||+|+ ++++|+|+++|+++.+.
T Consensus 1 ~~~~v~~~~~~~~a~~~m~~~~~~~~pV~d~------~~l~Givt~~dl~~~~~ 48 (70)
T 3fio_A 1 KAIVVQPKDTVDRVAKILSRNKAGSAVVMEG------DEILGVVTERDILDKVV 48 (70)
T ss_dssp CEEEECTTCBHHHHHHHHHHTTCSEEEEEET------TEEEEEEEHHHHHHHTT
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCEEEEEEC------CEEEEEEEHHHHHHHHH
Confidence 4678999999999999999999999999997 69999999999987653
No 80
>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}
Probab=98.23 E-value=1.5e-06 Score=71.64 Aligned_cols=47 Identities=13% Similarity=0.310 Sum_probs=42.9
Q ss_pred CceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCcEEEEEecccccHHHH
Q 003801 718 PYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHDFMPEHI 768 (794)
Q Consensus 718 p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~vvGIITr~Dll~~~~ 768 (794)
+++|.+++++.+|.++|++++++++||+| +|+++||||.+|+++...
T Consensus 2 ~vtv~p~~tv~ea~~~M~~~~i~~~~V~d----~~~lvGIvT~~Di~~~~~ 48 (70)
T 3ghd_A 2 AIVVQPKDTVDRVAKILSRNKAGSAVVME----GDEILGVVTERDILDKVV 48 (70)
T ss_dssp EEEECTTCBHHHHHHHHHHTTCSEEEEEE----TTEEEEEEEHHHHHHHTT
T ss_pred CEEECCCCcHHHHHHHHHHcCCCEEEEEE----CCEEEEEEEHHHHHHHHH
Confidence 46899999999999999999999999998 479999999999987554
No 81
>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}
Probab=98.10 E-value=2.7e-06 Score=80.33 Aligned_cols=60 Identities=18% Similarity=0.270 Sum_probs=54.5
Q ss_pred ccccccccc--CCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCC-CcEEEEEecccccHHHHHh
Q 003801 708 VDLHPFANA--SPYTVVETMSLAKALILFREVGLRHLLVIPKISNG-SPVMGILTRHDFMPEHILA 770 (794)
Q Consensus 708 idl~~im~~--~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~-g~vvGIITr~Dll~~~~~~ 770 (794)
..++++|++ ++.++++++++.++.++|++.+.+++||+|+ + |+++|+||++|+++.....
T Consensus 23 ~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~---~~~~lvGivt~~dl~~~~~~~ 85 (148)
T 3lv9_A 23 KKIREIMVPRTDMVCIYESDSEEKILAILKEEGVTRYPVCRK---NKDDILGFVHIRDLYNQKINE 85 (148)
T ss_dssp CBGGGTSEETTTCCCEETTCCHHHHHHHHHHSCCSEEEEESS---STTSEEEEEEHHHHHHHHHHH
T ss_pred CCHHHccccHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcC---CCCcEEEEEEHHHHHHHHhcC
Confidence 557889998 8999999999999999999999999999987 6 7999999999999876554
No 82
>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A
Probab=98.09 E-value=3.1e-06 Score=79.12 Aligned_cols=60 Identities=7% Similarity=0.157 Sum_probs=54.1
Q ss_pred ccccccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCC--cEEEEEecccccHHHHH
Q 003801 707 YVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGS--PVMGILTRHDFMPEHIL 769 (794)
Q Consensus 707 ~idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g--~vvGIITr~Dll~~~~~ 769 (794)
.+.++++|++++.++++++++.++.++|++.+.+++||+|+ ++ +++|+||++|+++....
T Consensus 4 ~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~---~~~~~~~Givt~~dl~~~~~~ 65 (141)
T 2rih_A 4 AIRTSELLKRPPVSLPETATIREVATELAKNRVGLAVLTAR---DNPKRPVAVVSERDILRAVAQ 65 (141)
T ss_dssp -CBGGGGCCSCCEEEETTCBHHHHHHHHHHHTCSEEEEEET---TEEEEEEEEEEHHHHHHHHHT
T ss_pred ceEHHHHhcCCCeEeCCCCcHHHHHHHHHHcCCCEEEEEcC---CCcceeEEEEEHHHHHHHHhc
Confidence 35678999999999999999999999999999999999997 67 99999999999986554
No 83
>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*
Probab=98.07 E-value=2.9e-06 Score=87.43 Aligned_cols=61 Identities=13% Similarity=0.212 Sum_probs=55.8
Q ss_pred ccccccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCcEEEEEecccccHHHHHh
Q 003801 707 YVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHDFMPEHILA 770 (794)
Q Consensus 707 ~idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~vvGIITr~Dll~~~~~~ 770 (794)
...++++|++++.++++++++.+|+++|++.+++++||+|+ +|+++|+||.+|+++.+...
T Consensus 6 ~~~v~~im~~~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~---~~~l~Giit~~di~~~~~~~ 66 (245)
T 3l2b_A 6 KLKVEDLEMDKIAPLAPEVSLKMAWNIMRDKNLKSIPVADG---NNHLLGMLSTSNITATYMDI 66 (245)
T ss_dssp CCBGGGSCCBCCCCBCTTCBHHHHHHHHHHTTCSEEEEECT---TCBEEEEEEHHHHHHHHHCC
T ss_pred cCcHHHhcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcC---CCEEEEEEEHHHHHHHHHHh
Confidence 34678999999999999999999999999999999999997 79999999999999877643
No 84
>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1
Probab=98.06 E-value=4e-06 Score=86.87 Aligned_cols=63 Identities=10% Similarity=0.174 Sum_probs=54.9
Q ss_pred ccccccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCcEEEEEecccccHHHHHh
Q 003801 707 YVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHDFMPEHILA 770 (794)
Q Consensus 707 ~idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~vvGIITr~Dll~~~~~~ 770 (794)
.+.++++|++++++|.+++++.++.++|.+.+++++||||+ .++++++|+||++||++.....
T Consensus 12 ~~~v~diMt~~vvtv~~~~tv~~~~~lm~~~~~~~~PVVd~-~~~~~LvGiIt~~dl~~~l~~~ 74 (250)
T 2d4z_A 12 NIQVGDIMVRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDT-PDTNTLLGSIDRTEVEGLLQRR 74 (250)
T ss_dssp SCBTTSSSBSSCCCEETTCBHHHHHHHHHHCCCSEEEEESC-TTTCBEEEEEEHHHHHHHHHHH
T ss_pred CCChHHhcCCCCeEECCCCCHHHHHHHHHhcCCCEEEEEec-CCCCeEEEEEEHHHHHHHHHHh
Confidence 35678999999999999999999999999999999999986 2236899999999999865543
No 85
>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1
Probab=98.05 E-value=3.9e-06 Score=77.95 Aligned_cols=56 Identities=21% Similarity=0.330 Sum_probs=51.7
Q ss_pred cccccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCcEEEEEecccccHH
Q 003801 708 VDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHDFMPE 766 (794)
Q Consensus 708 idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~vvGIITr~Dll~~ 766 (794)
..++++|+++++++++++++.++.++|.+.+.+++||+|+ +|+++|+||++|+++.
T Consensus 7 ~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~---~~~~~Givt~~dl~~~ 62 (138)
T 2yzi_A 7 APIKVYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVIND---DGNVVGFFTKSDIIRR 62 (138)
T ss_dssp SBGGGTCBCCCCEECTTSBHHHHHHHHHHHTCSEEEEECT---TSCEEEEEEHHHHHHH
T ss_pred hhHHHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcC---CCcEEEEEeHHHHHHH
Confidence 4578899999999999999999999999999999999997 7899999999999753
No 86
>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1
Probab=98.02 E-value=4.4e-06 Score=80.11 Aligned_cols=60 Identities=18% Similarity=0.418 Sum_probs=54.8
Q ss_pred ccccccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCcEEEEEecccccHHHHH
Q 003801 707 YVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHDFMPEHIL 769 (794)
Q Consensus 707 ~idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~vvGIITr~Dll~~~~~ 769 (794)
...++++|+++++++.+++++.+|.++|++.+.+.+||+|+ +|+++|+||++|+++....
T Consensus 4 ~~~v~dim~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~---~~~lvGivt~~dl~~~~~~ 63 (160)
T 2o16_A 4 MIKVEDMMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDA---NKKLLGIVSQRDLLAAQES 63 (160)
T ss_dssp CCBGGGTSEESCCCBCTTSBHHHHHHHHHHHTCSEEEEECT---TCBEEEEEEHHHHHHHHHH
T ss_pred cCcHHHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcC---CCcEEEEEeHHHHHHHHHH
Confidence 45678999999999999999999999999999999999997 7899999999999987654
No 87
>3fio_A A cystathionine beta-synthase domain protein fused to A Zn-ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus} PDB: 3ghd_A
Probab=98.01 E-value=7.3e-06 Score=66.74 Aligned_cols=48 Identities=10% Similarity=0.242 Sum_probs=43.6
Q ss_pred CceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCcEEEEEecccccHHHHH
Q 003801 718 PYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHDFMPEHIL 769 (794)
Q Consensus 718 p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~vvGIITr~Dll~~~~~ 769 (794)
+.++++++++.++.++|++.+.+++||+|+ ++++|+||++|+++....
T Consensus 2 ~~~v~~~~~~~~a~~~m~~~~~~~~pV~d~----~~l~Givt~~dl~~~~~~ 49 (70)
T 3fio_A 2 AIVVQPKDTVDRVAKILSRNKAGSAVVMEG----DEILGVVTERDILDKVVA 49 (70)
T ss_dssp EEEECTTCBHHHHHHHHHHTTCSEEEEEET----TEEEEEEEHHHHHHHTTT
T ss_pred CeEECCCCcHHHHHHHHHHcCCCEEEEEEC----CEEEEEEEHHHHHHHHHH
Confidence 568999999999999999999999999984 789999999999986644
No 88
>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}
Probab=98.00 E-value=5.9e-06 Score=79.19 Aligned_cols=60 Identities=13% Similarity=0.223 Sum_probs=51.9
Q ss_pred cccccccc--CCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCcEEEEEecccccHHHHHhc
Q 003801 709 DLHPFANA--SPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHDFMPEHILAL 771 (794)
Q Consensus 709 dl~~im~~--~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~vvGIITr~Dll~~~~~~~ 771 (794)
.++++|.+ +..+|.+++++.+|.++|.+++.+++||+|+ +++++|+||.+|+++......
T Consensus 16 ~~~~iM~P~~~v~~v~~~~t~~~a~~~m~~~~~s~~pVvd~---~~~lvGiit~~Di~~~~~~~~ 77 (156)
T 3k6e_A 16 QEETFLTPAKNLAVLIDTHNADHATLLLSQMTYTRVPVVTD---EKQFVGTIGLRDIMAYQMEHD 77 (156)
T ss_dssp TGGGGEEETTSSCCEETTSBHHHHHHHHTTSSSSEEEEECC----CBEEEEEEHHHHHHHHHHHT
T ss_pred cHHHhCcchhHeEEECCcCCHHHHHHHHHHcCCcEEEEEcC---CCcEEEEEEecchhhhhhhcc
Confidence 35677764 6789999999999999999999999999997 789999999999998776543
No 89
>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}
Probab=97.98 E-value=6.2e-06 Score=75.95 Aligned_cols=58 Identities=14% Similarity=0.140 Sum_probs=51.4
Q ss_pred cccccccc--cCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCC-CcEEEEEecccccHHHH
Q 003801 708 VDLHPFAN--ASPYTVVETMSLAKALILFREVGLRHLLVIPKISNG-SPVMGILTRHDFMPEHI 768 (794)
Q Consensus 708 idl~~im~--~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~-g~vvGIITr~Dll~~~~ 768 (794)
..++++|+ ++++++++++++.+|.++|++.+.+++||+|+ + ++++|+||.+|+++...
T Consensus 5 ~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~---~~~~~~Givt~~dl~~~~~ 65 (129)
T 3jtf_A 5 RTVADIMVPRSRMDLLDISQPLPQLLATIIETAHSRFPVYED---DRDNIIGILLAKDLLRYML 65 (129)
T ss_dssp CBHHHHCEEGGGCCCEETTSCHHHHHHHHHHSCCSEEEEESS---STTCEEEEEEGGGGGGGGT
T ss_pred CCHHHhCccHHHeEEECCCCCHHHHHHHHHHcCCCEEEEEcC---CCCcEEEEEEHHHHHhHhc
Confidence 45678888 66789999999999999999999999999986 5 89999999999997643
No 90
>3ctu_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.81A {Streptococcus pneumoniae TIGR4} PDB: 3k6e_A
Probab=97.98 E-value=6.8e-06 Score=78.17 Aligned_cols=60 Identities=13% Similarity=0.223 Sum_probs=53.4
Q ss_pred cccccccc--cCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCcEEEEEecccccHHHHHh
Q 003801 708 VDLHPFAN--ASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHDFMPEHILA 770 (794)
Q Consensus 708 idl~~im~--~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~vvGIITr~Dll~~~~~~ 770 (794)
..++++|+ +++.++++++++.+|.++|.+.+.+++||+|+ +|+++|+||.+|+++....+
T Consensus 15 ~~v~dim~p~~~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~---~~~~~Giit~~dl~~~~~~~ 76 (156)
T 3ctu_A 15 GQEETFLTPAKNLAVLIDTHNADHATLLLSQMTYTRVPVVTD---EKQFVGTIGLRDIMAYQMEH 76 (156)
T ss_dssp TTGGGGEEEGGGCCCEETTSBHHHHHHHHTTCSSSEEEEECC----CBEEEEEEHHHHHHHHHHH
T ss_pred HHHHHHcCcccCceEECCCCCHHHHHHHHHHCCCceEeEECC---CCEEEEEEcHHHHHHHHHhc
Confidence 35688898 67899999999999999999999999999997 79999999999999877653
No 91
>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}
Probab=97.98 E-value=5.8e-06 Score=75.86 Aligned_cols=57 Identities=19% Similarity=0.237 Sum_probs=50.8
Q ss_pred ccccccccC--CceecCCCCHHHHHHHHHHcCCCEEEEeecCCCC-CcEEEEEecccccHHHH
Q 003801 709 DLHPFANAS--PYTVVETMSLAKALILFREVGLRHLLVIPKISNG-SPVMGILTRHDFMPEHI 768 (794)
Q Consensus 709 dl~~im~~~--p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~-g~vvGIITr~Dll~~~~ 768 (794)
.++++|++. ++++++++++.+|.++|++.+.+++||+|+ + |+++|+||.+|+++...
T Consensus 4 ~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~---~~~~~vGivt~~dl~~~~~ 63 (127)
T 3nqr_A 4 RVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISE---DKDHIEGILMAKDLLPFMR 63 (127)
T ss_dssp BHHHHSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESS---STTCEEEEEEGGGGGGGGS
T ss_pred CHHHhcccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEcC---CCCcEEEEEEHHHHHHHHh
Confidence 467788854 899999999999999999999999999997 6 79999999999997643
No 92
>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*
Probab=97.97 E-value=7e-06 Score=77.56 Aligned_cols=58 Identities=16% Similarity=0.143 Sum_probs=53.7
Q ss_pred ccccccccc--CCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCcEEEEEecccccHHHH
Q 003801 708 VDLHPFANA--SPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHDFMPEHI 768 (794)
Q Consensus 708 idl~~im~~--~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~vvGIITr~Dll~~~~ 768 (794)
..++++|++ ++.++++++++.++.++|.+.+.+++||+|+ +|+++|+||++|+++...
T Consensus 28 ~~v~dim~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~---~~~~~Givt~~dl~~~~~ 87 (149)
T 3k2v_A 28 LRVNDIMHTGDEIPHVGLQATLRDALLEITRKNLGMTAICDD---DMNIIGIFTDGDLRRVFD 87 (149)
T ss_dssp SBGGGTSBCGGGSCEECTTCBHHHHHHHHHHHTSSEEEEECT---TCBEEEEEEHHHHHHHHC
T ss_pred cCHHHHhcCCCCCeEECCCCcHHHHHHHHHhCCCcEEEEECC---CCcEEEEecHHHHHHHHh
Confidence 468899999 9999999999999999999999999999997 789999999999997654
No 93
>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*
Probab=97.94 E-value=1.2e-05 Score=72.90 Aligned_cols=59 Identities=19% Similarity=0.300 Sum_probs=54.1
Q ss_pred ceeccccccceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHh
Q 003801 597 LTVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKK 660 (794)
Q Consensus 597 l~v~diM~~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~ 660 (794)
.+++++|.+++.++++++++.++++.|.+++.+.+||+|++ ++++|+|+++|+++.+.+
T Consensus 62 ~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~-----g~~~Givt~~dl~~~l~~ 120 (122)
T 3kpb_A 62 KTIEEIMTRNVITAHEDEPVDHVAIKMSKYNISGVPVVDDY-----RRVVGIVTSEDISRLFGG 120 (122)
T ss_dssp CBGGGTSBSSCCCEETTSBHHHHHHHHHHHTCSEEEEECTT-----CBEEEEEEHHHHHHHHC-
T ss_pred cCHHHHhcCCCeEECCCCCHHHHHHHHHHhCCCeEEEECCC-----CCEEEEEeHHHHHHHhhc
Confidence 37999999999999999999999999999999999999987 899999999999887653
No 94
>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}
Probab=97.92 E-value=8.7e-06 Score=75.74 Aligned_cols=57 Identities=16% Similarity=0.229 Sum_probs=50.9
Q ss_pred ccccccc--cCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCC-CcEEEEEecccccHHHH
Q 003801 709 DLHPFAN--ASPYTVVETMSLAKALILFREVGLRHLLVIPKISNG-SPVMGILTRHDFMPEHI 768 (794)
Q Consensus 709 dl~~im~--~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~-g~vvGIITr~Dll~~~~ 768 (794)
.++++|+ +++.++++++++.+|.++|++.+.+++||+|+ + ++++|+||.+|+++...
T Consensus 4 ~v~~iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~---~~~~~vGivt~~dl~~~~~ 63 (136)
T 3lfr_A 4 QVRDIMVPRSQMISIKATQTPREFLPAVIDAAHSRYPVIGE---SHDDVLGVLLAKDLLPLIL 63 (136)
T ss_dssp BHHHHSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESS---STTCEEEEEEGGGGGGGGG
T ss_pred ChHhccccHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEcC---CCCcEEEEEEHHHHHHHHH
Confidence 4677887 56789999999999999999999999999997 5 79999999999998654
No 95
>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*
Probab=97.92 E-value=1.2e-05 Score=76.86 Aligned_cols=58 Identities=21% Similarity=0.415 Sum_probs=52.4
Q ss_pred ccccccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCcEEEEEecccccHHHH
Q 003801 707 YVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHDFMPEHI 768 (794)
Q Consensus 707 ~idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~vvGIITr~Dll~~~~ 768 (794)
.+.++++|++ ++++.+++++.+|.++|.+.+.+++||+|+ +|+++|+||.+|+++...
T Consensus 16 ~~~v~~im~~-~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~---~~~~~Givt~~dl~~~~~ 73 (159)
T 3fv6_A 16 KLQVKDFQSI-PVVIHENVSVYDAICTMFLEDVGTLFVVDR---DAVLVGVLSRKDLLRASI 73 (159)
T ss_dssp TCBGGGSCBC-CCEEETTSBHHHHHHHHHHHTCSEEEEECT---TSCEEEEEEHHHHHHHHT
T ss_pred hCCHHHHcCC-CEEECCCCcHHHHHHHHHHCCCCEEEEEcC---CCcEEEEEeHHHHHHHhh
Confidence 3568899987 679999999999999999999999999997 789999999999998653
No 96
>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}
Probab=97.91 E-value=9.4e-06 Score=74.48 Aligned_cols=59 Identities=14% Similarity=0.254 Sum_probs=54.9
Q ss_pred ceeccccccceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHh
Q 003801 597 LTVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKK 660 (794)
Q Consensus 597 l~v~diM~~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~ 660 (794)
.+++++|.+++.++++++++.++++.|.+++.+.+||+|++ ++++|+|+++|+++.+.+
T Consensus 68 ~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~-----g~~~Giit~~dll~~l~~ 126 (128)
T 3gby_A 68 EKLGEELLETVRSYRPGEQLFDNLISVAAAKCSVVPLADED-----GRYEGVVSRKRILGFLAE 126 (128)
T ss_dssp CBCCGGGCBCCCCBCTTSBGGGSHHHHHHCSSSEEEEECTT-----CBEEEEEEHHHHHHHHHT
T ss_pred CcHHHHccCCCcEECCCCCHHHHHHHHHhCCCcEEEEECCC-----CCEEEEEEHHHHHHHHHh
Confidence 67999999999999999999999999999999999999987 899999999999887754
No 97
>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}
Probab=97.88 E-value=1.4e-05 Score=76.85 Aligned_cols=61 Identities=16% Similarity=0.154 Sum_probs=54.3
Q ss_pred cccccccccc---CCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCcEEEEEecccccHHHHHh
Q 003801 707 YVDLHPFANA---SPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHDFMPEHILA 770 (794)
Q Consensus 707 ~idl~~im~~---~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~vvGIITr~Dll~~~~~~ 770 (794)
.+.++++|++ ++.++.+++++.+|.++|.+.+.+++||+|+ +|+++|+||++|+++....+
T Consensus 23 ~~~v~dim~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~---~~~~~Givt~~dl~~~~~~~ 86 (165)
T 3fhm_A 23 ATFVKDLLDRKGRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDA---DGVVLGIFTERDLVKAVAGQ 86 (165)
T ss_dssp SCBHHHHHHHHCSCCCEECTTSBHHHHHHHHHHHTCSEEEEECT---TSCEEEEEEHHHHHHHHHHH
T ss_pred hcCHHHHhccCCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcC---CCeEEEEEEHHHHHHHHHhc
Confidence 3567788885 6899999999999999999999999999997 78999999999999876654
No 98
>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1
Probab=97.85 E-value=1.9e-05 Score=72.69 Aligned_cols=60 Identities=17% Similarity=0.256 Sum_probs=55.4
Q ss_pred cceeccccccceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHh
Q 003801 596 QLTVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKK 660 (794)
Q Consensus 596 ~l~v~diM~~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~ 660 (794)
..+++++|.+++.++++++++.++++.|.+++.+.+||+|++ ++++|+|+++|++..+.+
T Consensus 66 ~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~-----g~~~Giit~~dll~~~~~ 125 (133)
T 2ef7_A 66 ETKAEEFMTASLITIREDSPITGALALMRQFNIRHLPVVDDK-----GNLKGIISIRDITRAIDD 125 (133)
T ss_dssp TCBGGGTSEECCCCEETTSBHHHHHHHHHHHTCSEEEEECTT-----SCEEEEEEHHHHHHHHHH
T ss_pred ccCHHHHcCCCCEEECCCCCHHHHHHHHHHcCCCEEEEECCC-----CeEEEEEEHHHHHHHHHH
Confidence 467999999999999999999999999999999999999976 899999999999887765
No 99
>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A
Probab=97.84 E-value=1.7e-05 Score=77.82 Aligned_cols=58 Identities=19% Similarity=0.235 Sum_probs=53.4
Q ss_pred cccccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCcEEEEEecccccHHHH
Q 003801 708 VDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHDFMPEHI 768 (794)
Q Consensus 708 idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~vvGIITr~Dll~~~~ 768 (794)
+.++++|+++++++.+++++.+|.++|.+.+.+++||+|+ +|+++|+||.+|+++...
T Consensus 9 ~~v~~im~~~~~~v~~~~~l~ea~~~~~~~~~~~~pVvd~---~g~~vGivt~~dl~~~~~ 66 (184)
T 1pvm_A 9 MRVEKIMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDD---NGNDVGLLSERSIIKRFI 66 (184)
T ss_dssp CBGGGTSBTTCCEEETTCBHHHHHHHHHHHTCCEEEEECT---TSCEEEEEEHHHHHHHTG
T ss_pred cCHHHhcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcC---CCcEEEEEeHHHHHHHHh
Confidence 5678999999999999999999999999999999999997 789999999999987544
No 100
>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}
Probab=97.84 E-value=2e-05 Score=75.25 Aligned_cols=58 Identities=16% Similarity=0.185 Sum_probs=52.1
Q ss_pred cccccccccc--CCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCC-CcEEEEEecccccHHH
Q 003801 707 YVDLHPFANA--SPYTVVETMSLAKALILFREVGLRHLLVIPKISNG-SPVMGILTRHDFMPEH 767 (794)
Q Consensus 707 ~idl~~im~~--~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~-g~vvGIITr~Dll~~~ 767 (794)
...++++|++ +++++++++++.++.++|++.+.+++||+|+ + ++++|+||.+|+++..
T Consensus 37 ~~~v~diM~~~~~~~~v~~~~~i~~a~~~m~~~~~~~~pVvd~---~~~~lvGivt~~dl~~~~ 97 (156)
T 3oi8_A 37 DLEVRDAMITRSRMNVLKENDSIERITAYVIDTAHSRFPVIGE---DKDEVLGILHAKDLLKYM 97 (156)
T ss_dssp TCBGGGTCEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESS---STTCEEEEEEGGGGGGGS
T ss_pred CCCHhheeeeHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcC---CCCcEEEEEEHHHHHHHH
Confidence 3567899986 7899999999999999999999999999997 5 4999999999999764
No 101
>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}
Probab=97.83 E-value=1.8e-05 Score=76.75 Aligned_cols=60 Identities=20% Similarity=0.370 Sum_probs=55.8
Q ss_pred cceeccccccceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHh
Q 003801 596 QLTVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKK 660 (794)
Q Consensus 596 ~l~v~diM~~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~ 660 (794)
+.+++++|+++++++++++++.++++.|.+++++.+||+|++ ++++|+|+++|+++.+.+
T Consensus 97 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-----g~~vGiit~~dil~~~~~ 156 (180)
T 3sl7_A 97 GKVVGDLMTPSPLVVRDSTNLEDAARLLLETKFRRLPVVDAD-----GKLIGILTRGNVVRAALQ 156 (180)
T ss_dssp TCBHHHHSEESCCCEETTSBHHHHHHHHTTSTTCEEEEECTT-----CBEEEEEEHHHHHHHHHH
T ss_pred cccHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCEEEEECCC-----CeEEEEEEHHHHHHHHHH
Confidence 567999999999999999999999999999999999999976 899999999999988764
No 102
>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}
Probab=97.83 E-value=1.8e-05 Score=74.33 Aligned_cols=60 Identities=22% Similarity=0.355 Sum_probs=55.5
Q ss_pred cceeccccccceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHh
Q 003801 596 QLTVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKK 660 (794)
Q Consensus 596 ~l~v~diM~~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~ 660 (794)
..+++++|.++++++++++++.++++.|.+++.+.+||+|++ ++++|+|+++|+++.+.+
T Consensus 84 ~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~-----g~~~Giit~~dil~~~~~ 143 (152)
T 4gqw_A 84 GKLVGDLMTPAPLVVEEKTNLEDAAKILLETKYRRLPVVDSD-----GKLVGIITRGNVVRAALQ 143 (152)
T ss_dssp CCBHHHHSEESCCCEESSSBHHHHHHHHHHSSCCEEEEECTT-----SBEEEEEEHHHHHHHHHC
T ss_pred cccHHHhcCCCceEECCCCcHHHHHHHHHHCCCCEEEEECCC-----CcEEEEEEHHHHHHHHHh
Confidence 467999999999999999999999999999999999999976 899999999999987764
No 103
>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}
Probab=97.83 E-value=2.7e-05 Score=78.20 Aligned_cols=61 Identities=13% Similarity=0.200 Sum_probs=56.5
Q ss_pred cceeccccccceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHhc
Q 003801 596 QLTVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKK 661 (794)
Q Consensus 596 ~l~v~diM~~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~~ 661 (794)
+.+++++|+++++++++++++.++++.|++++.+.+||||++ ++++|+|+++|++..+...
T Consensus 115 ~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVD~~-----g~lvGiIT~~Dil~~i~~e 175 (205)
T 3kxr_A 115 HEPLISLLSEDSRALTANTTLLDAAEAIEHSREIELPVIDDA-----GELIGRVTLRAATALVREH 175 (205)
T ss_dssp TSBGGGGCCSSCCCEETTSCHHHHHHHHHTSSCSEEEEECTT-----SBEEEEEEHHHHHHHHHHH
T ss_pred cchHHHHhcCCCeEECCCCCHHHHHHHHHhcCCCEEEEEcCC-----CeEEEEEEHHHHHHHHHHH
Confidence 467999999999999999999999999999999999999987 8999999999999888653
No 104
>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1
Probab=97.82 E-value=2.3e-05 Score=72.37 Aligned_cols=60 Identities=15% Similarity=0.261 Sum_probs=55.0
Q ss_pred ccceeccccccceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHh
Q 003801 595 RQLTVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKK 660 (794)
Q Consensus 595 ~~l~v~diM~~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~ 660 (794)
.+.+++|+|.+++.++++++++.++++.|.+++.+.+||+| + ++++|+|+++|++..+.+
T Consensus 72 ~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~-----g~~~Giit~~dll~~~~~ 131 (135)
T 2rc3_A 72 KDTQVKEIMTRQVAYVDLNNTNEDCMALITEMRVRHLPVLD-D-----GKVIGLLSIGDLVKDAIS 131 (135)
T ss_dssp GGSBGGGTSBCSCCCBCTTCBHHHHHHHHHHHTCSEEEEEE-T-----TEEEEEEEHHHHHHHHHC
T ss_pred ccCCHHHhccCCCeEECCCCcHHHHHHHHHHhCCCEEEEEe-C-----CEEEEEEEHHHHHHHHHh
Confidence 46789999999999999999999999999999999999999 5 799999999999887653
No 105
>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}
Probab=97.81 E-value=2.6e-05 Score=72.23 Aligned_cols=60 Identities=27% Similarity=0.416 Sum_probs=53.9
Q ss_pred cceeccccccceeEEeccccHHHHHHHHhcCC-----CCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHh
Q 003801 596 QLTVGDVVTAPLQLFHGIEKAGNVVHVLRTTR-----HNGFPVIDENPLSETPILYGLILRAHLITLLKK 660 (794)
Q Consensus 596 ~l~v~diM~~~vv~l~~~~sv~~a~~~L~~~~-----~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~ 660 (794)
+.+++++|.+++.++++++++.++++.|.+++ .+.+||+|++ ++++|+|+++|+++.+.+
T Consensus 72 ~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~l~Vvd~~-----g~~~Giit~~dll~~~~~ 136 (138)
T 2p9m_A 72 ETTIGDVMTKDVITIHEDASILEAIKKMDISGKKEEIINQLPVVDKN-----NKLVGIISDGDIIRTISK 136 (138)
T ss_dssp SCBHHHHSCSSCCCEETTSBHHHHHHHHTCC-----CCCEEEEECTT-----SBEEEEEEHHHHHHHHHH
T ss_pred CcCHHHHhCCCcEEECCCCCHHHHHHHHHhcCCccccccEEEEECCC-----CeEEEEEEHHHHHHHHHh
Confidence 56789999999999999999999999999999 9999999976 899999999999887654
No 106
>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*
Probab=97.81 E-value=1.2e-05 Score=78.65 Aligned_cols=60 Identities=13% Similarity=0.160 Sum_probs=53.4
Q ss_pred ccccccccccC----Ccee--cCCCCHHHHHHHHHHcCCCEEEEe--ecCCCCCcEEEEEecccccHHHHH
Q 003801 707 YVDLHPFANAS----PYTV--VETMSLAKALILFREVGLRHLLVI--PKISNGSPVMGILTRHDFMPEHIL 769 (794)
Q Consensus 707 ~idl~~im~~~----p~tV--~~~~sL~~a~~lf~~~glr~LpVV--d~~~~~g~vvGIITr~Dll~~~~~ 769 (794)
...++++|++. ++++ .+++++.+|.++|++.+.+++||+ |+ +|+++|+||++|+++....
T Consensus 10 ~~~v~dim~~~~~~~~~~v~~~~~~~~~~a~~~~~~~~~~~~pVv~~d~---~~~lvGiit~~dl~~~~~~ 77 (185)
T 2j9l_A 10 KTLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRE---SQRLVGFVLRRDLIISIEN 77 (185)
T ss_dssp CCBHHHHSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCTT---TCBEEEEEEHHHHHHHHHH
T ss_pred cCcHHHHhcccccCceEEEecCCCccHHHHHHHHHhcCCCceeEEEECC---CCeEEEEEEHHHHHHHHHh
Confidence 45678888876 7889 999999999999999999999999 66 7899999999999987654
No 107
>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1
Probab=97.81 E-value=2.1e-05 Score=71.37 Aligned_cols=60 Identities=10% Similarity=0.075 Sum_probs=54.4
Q ss_pred ccceeccccccceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHh
Q 003801 595 RQLTVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKK 660 (794)
Q Consensus 595 ~~l~v~diM~~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~ 660 (794)
...+++++|.+++.++++++++.++++.|.+++.+.+||+|+ ++++|+|+++|++..+.+
T Consensus 63 ~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~------~~~~Gvit~~dl~~~l~~ 122 (125)
T 1pbj_A 63 AEVKVWEVMERDLVTISPRATIKEAAEKMVKNVVWRLLVEED------DEIIGVISATDILRAKMA 122 (125)
T ss_dssp TTSBHHHHCBCGGGEECTTSCHHHHHHHHHHHTCSEEEEEET------TEEEEEEEHHHHHHHHC-
T ss_pred cccCHHHHcCCCCeEECCCCCHHHHHHHHHhcCCcEEEEEEC------CEEEEEEEHHHHHHHHHh
Confidence 356899999999999999999999999999999999999987 699999999999887654
No 108
>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1
Probab=97.79 E-value=1.3e-05 Score=76.60 Aligned_cols=58 Identities=16% Similarity=0.217 Sum_probs=52.6
Q ss_pred ccccccccc--CCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCcEEEEEecccccHHHH
Q 003801 708 VDLHPFANA--SPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHDFMPEHI 768 (794)
Q Consensus 708 idl~~im~~--~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~vvGIITr~Dll~~~~ 768 (794)
..++++|++ ++.++.+++++.+|.++|.+.+.+++||+|+ +|+++|+||++|+++...
T Consensus 14 ~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~---~~~lvGivt~~dl~~~~~ 73 (159)
T 1yav_A 14 ATVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDP---SYRLHGLIGTNMIMNSIF 73 (159)
T ss_dssp CBHHHHSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECT---TCBEEEEEEHHHHHHHHB
T ss_pred hhHHHHhCCccceEEECCCCcHHHHHHHHHhCCCcEEEEECC---CCCEEEEeEHHHHHHHhh
Confidence 457788988 8999999999999999999999999999997 789999999999987543
No 109
>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}
Probab=97.79 E-value=3.4e-05 Score=73.13 Aligned_cols=59 Identities=17% Similarity=0.105 Sum_probs=54.5
Q ss_pred cceeccccccceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHh
Q 003801 596 QLTVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKK 660 (794)
Q Consensus 596 ~l~v~diM~~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~ 660 (794)
..+++++| +++.++++++++.++++.|.+++.+.+||+|++ ++++|+|+++|++..+..
T Consensus 85 ~~~v~~~m-~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~-----g~~vGivt~~dil~~l~~ 143 (153)
T 3oco_A 85 KAKISTIM-RDIVSVPENMKVPDVMEEMSAHRVPMAIVIDEY-----GGTSGIITDKDVYEELFG 143 (153)
T ss_dssp TSBGGGTC-BCCEEEETTSBHHHHHHHHHHTTCSCEEEECTT-----SCEEEEECHHHHHHHHHC
T ss_pred CCcHHHHh-CCCeEECCCCCHHHHHHHHHHcCCcEEEEEeCC-----CCEEEEeeHHHHHHHHhc
Confidence 46799999 889999999999999999999999999999987 899999999999987764
No 110
>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}
Probab=97.78 E-value=1.7e-05 Score=75.24 Aligned_cols=58 Identities=17% Similarity=0.262 Sum_probs=52.5
Q ss_pred cccccccccc--CCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCcEEEEEecccccHHH
Q 003801 707 YVDLHPFANA--SPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHDFMPEH 767 (794)
Q Consensus 707 ~idl~~im~~--~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~vvGIITr~Dll~~~ 767 (794)
...++++|++ +++++.+++++.+|.++|++.+.+++||+|+ +|+++|+||++|+++..
T Consensus 10 ~~~v~~im~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~---~~~~~Givt~~dl~~~~ 69 (157)
T 2emq_A 10 QMTVKPFLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDT---SYKLHGLISMTMMMDAI 69 (157)
T ss_dssp CCBSTTTCEEGGGSCCBCTTSBHHHHHHHHHHSSSSEEEEECT---TCCEEEEEEHHHHHHHS
T ss_pred hCcHHhhccCCccceEECCCCcHHHHHHHHHHCCceEEEEEcC---CCCEEEEeeHHHHHHHH
Confidence 3567889987 8899999999999999999999999999997 78999999999998754
No 111
>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}
Probab=97.76 E-value=3.8e-05 Score=74.52 Aligned_cols=59 Identities=22% Similarity=0.227 Sum_probs=54.5
Q ss_pred cceeccccccceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHh
Q 003801 596 QLTVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKK 660 (794)
Q Consensus 596 ~l~v~diM~~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~ 660 (794)
+.+++++| +++.++++++++.++++.|.+++.+.+||+|++ ++++|+|+++|++..+..
T Consensus 106 ~~~v~~im-~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~-----g~lvGiit~~Dil~~l~~ 164 (172)
T 3lhh_A 106 RLELVDLV-KNCNFVPNSLSGMELLEHFRTTGSQMVFVVDEY-----GDLKGLVTLQDMMDALTG 164 (172)
T ss_dssp CCCGGGGC-BCCEEEETTCCHHHHHHHHHHHTCSEEEEECTT-----SCEEEEEEHHHHHHHHHT
T ss_pred cccHHHHh-cCCeEeCCCCCHHHHHHHHHHcCCeEEEEEeCC-----CCEEEEeeHHHHHHHHhC
Confidence 56799999 888999999999999999999999999999987 899999999999887754
No 112
>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1
Probab=97.76 E-value=2.4e-05 Score=74.58 Aligned_cols=60 Identities=13% Similarity=0.163 Sum_probs=55.2
Q ss_pred ccceeccccccceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHh
Q 003801 595 RQLTVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKK 660 (794)
Q Consensus 595 ~~l~v~diM~~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~ 660 (794)
...+++|+|.+ ++++++++++.++++.|.+++.+.+||+|++ ++++|+|+++|+++.+.+
T Consensus 94 ~~~~v~~im~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-----g~~vGiit~~dll~~l~~ 153 (157)
T 1o50_A 94 IAKNASEIMLD-PVYVHMDTPLEEALKLMIDNNIQEMPVVDEK-----GEIVGDLNSLEILLALWK 153 (157)
T ss_dssp SSCBHHHHCBC-CCCBCTTSBHHHHHHHHHHHTCSEEEEECTT-----SCEEEEEEHHHHHHHHHH
T ss_pred cCCcHHHHcCC-CeEECCCCCHHHHHHHHHHCCCcEEEEEcCC-----CEEEEEEEHHHHHHHHHH
Confidence 45789999999 9999999999999999999999999999976 899999999999987764
No 113
>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}
Probab=97.76 E-value=2.7e-05 Score=71.83 Aligned_cols=58 Identities=9% Similarity=0.046 Sum_probs=52.3
Q ss_pred cceeccccccceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHH
Q 003801 596 QLTVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLK 659 (794)
Q Consensus 596 ~l~v~diM~~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~ 659 (794)
..+++++| +++.++++++++.++++.|.+++.+.+||+|++ ++++|+|+++|+++.+.
T Consensus 69 ~~~v~~~m-~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~-----g~lvGiit~~Dil~~l~ 126 (130)
T 3hf7_A 69 KEIMLRAA-DEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEY-----GDIQGLVTVEDILEEIV 126 (130)
T ss_dssp HHHHHHHS-BCCCEEETTCBHHHHHHHHHHHCCCEEEEECTT-----SCEEEEEEHHHHHHHHH
T ss_pred hhhHHHhc-cCCeEeCCCCcHHHHHHHHHhcCCeEEEEEcCC-----CCEEEEeeHHHHHHHHh
Confidence 45788999 667899999999999999999999999999987 89999999999988764
No 114
>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0
Probab=97.75 E-value=4.6e-05 Score=71.72 Aligned_cols=59 Identities=14% Similarity=0.291 Sum_probs=54.0
Q ss_pred ccceeccccccceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHh
Q 003801 595 RQLTVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKK 660 (794)
Q Consensus 595 ~~l~v~diM~~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~ 660 (794)
...+++|+|.+++.++++++++.++++.|.+++. +||+|++ ++++|+|+++|+++.+.+
T Consensus 85 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~--l~Vvd~~-----g~~~Giit~~dil~~l~~ 143 (150)
T 3lqn_A 85 EEMKVEQVMKQDIPVLKLEDSFAKALEMTIDHPF--ICAVNED-----GYFEGILTRRAILKLLNK 143 (150)
T ss_dssp GGCBGGGTCBSSCCEEETTCBHHHHHHHHHHCSE--EEEECTT-----CBEEEEEEHHHHHHHHHH
T ss_pred hcCCHHHHhcCCCceeCCCCCHHHHHHHHHhCCE--EEEECCC-----CcEEEEEEHHHHHHHHHH
Confidence 4678999999999999999999999999998876 9999976 899999999999988765
No 115
>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}
Probab=97.74 E-value=3e-05 Score=71.35 Aligned_cols=58 Identities=24% Similarity=0.287 Sum_probs=52.3
Q ss_pred cceeccccccceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHH
Q 003801 596 QLTVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLK 659 (794)
Q Consensus 596 ~l~v~diM~~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~ 659 (794)
..+++++|+ ++.++++++++.++++.|.+++.+.+||+|++ ++++|+|+++|+++.+.
T Consensus 71 ~~~v~~~m~-~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~-----g~~vGivt~~dil~~l~ 128 (130)
T 3i8n_A 71 QKQLGAVMR-PIQVVLNNTALPKVFDQMMTHRLQLALVVDEY-----GTVLGLVTLEDIFEHLV 128 (130)
T ss_dssp TSBHHHHSE-ECCEEETTSCHHHHHHHHHHHTCCEEEEECTT-----SCEEEEEEHHHHHHHHH
T ss_pred cCCHHHHhc-CCcCcCCCCcHHHHHHHHHHcCCeEEEEEcCC-----CCEEEEEEHHHHHHHHc
Confidence 467899995 57899999999999999999999999999987 89999999999987664
No 116
>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A
Probab=97.73 E-value=1.3e-05 Score=73.82 Aligned_cols=55 Identities=24% Similarity=0.245 Sum_probs=50.8
Q ss_pred cccccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCcEEEEEecccccH
Q 003801 708 VDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHDFMP 765 (794)
Q Consensus 708 idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~vvGIITr~Dll~ 765 (794)
..++++|++++.++++++++.++.++|.+.+.+++||+|+ +++++|+||++|+++
T Consensus 8 ~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~---~~~~~Givt~~dl~~ 62 (133)
T 1y5h_A 8 TTARDIMNAGVTCVGEHETLTAAAQYMREHDIGALPICGD---DDRLHGMLTDRDIVI 62 (133)
T ss_dssp CCHHHHSEETCCCEETTSBHHHHHHHHHHHTCSEEEEECG---GGBEEEEEEHHHHHH
T ss_pred cCHHHHhcCCceEeCCCCCHHHHHHHHHHhCCCeEEEECC---CCeEEEEEeHHHHHH
Confidence 4567889899999999999999999999999999999987 789999999999984
No 117
>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A
Probab=97.72 E-value=3.6e-05 Score=71.63 Aligned_cols=54 Identities=6% Similarity=0.057 Sum_probs=49.9
Q ss_pred ccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCcEEEEEecccccHHHHH
Q 003801 713 FANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHDFMPEHIL 769 (794)
Q Consensus 713 im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~vvGIITr~Dll~~~~~ 769 (794)
+|.++++++.+++++.+|.++|.+.+.+++||+|+ +++++|+||++|+++....
T Consensus 16 ~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~---~~~~~Givt~~dl~~~~~~ 69 (144)
T 2nyc_A 16 ITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDE---NGYLINVYEAYDVLGLIKG 69 (144)
T ss_dssp CBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECT---TCBEEEEEEHHHHHHHHHT
T ss_pred CCCCCceEECCCCcHHHHHHHHHHcCcceeeEEcC---CCcEEEEEcHHHHHHHhcc
Confidence 78889999999999999999999999999999997 7899999999999886543
No 118
>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}
Probab=97.70 E-value=2.4e-05 Score=74.74 Aligned_cols=60 Identities=15% Similarity=0.271 Sum_probs=52.7
Q ss_pred cccccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCcEEEEEecccccHHHH
Q 003801 708 VDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHDFMPEHI 768 (794)
Q Consensus 708 idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~vvGIITr~Dll~~~~ 768 (794)
..++++|++++.++++++++.+|.++|.+.+.+++||+|+ +++++++|+||++|+++...
T Consensus 13 ~~v~dim~~~~~~v~~~~~~~~a~~~~~~~~~~~~pVvd~-~~~~~~~Givt~~dl~~~~~ 72 (164)
T 2pfi_A 13 VRVEHFMNHSITTLAKDTPLEEVVKVVTSTDVTEYPLVES-TESQILVGIVQRAQLVQALQ 72 (164)
T ss_dssp CBHHHHCBCCCCCEETTCBHHHHHHHHHTCCCSEEEEESC-TTTCBEEEEEEHHHHHHHHH
T ss_pred CCHHHHcCCCCeEECCCCcHHHHHHHHHhCCCCceeEEec-CCCCEEEEEEEHHHHHHHHH
Confidence 4577899999999999999999999999999999999983 11588999999999987654
No 119
>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}
Probab=97.69 E-value=3.8e-05 Score=72.96 Aligned_cols=60 Identities=20% Similarity=0.346 Sum_probs=55.6
Q ss_pred ccceeccccccceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHh
Q 003801 595 RQLTVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKK 660 (794)
Q Consensus 595 ~~l~v~diM~~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~ 660 (794)
...+++|+|.+++.++++++++.++++.|.+++++.+||+| + ++++|+|+++|+++.+..
T Consensus 76 ~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~-----g~~~Giit~~dil~~l~~ 135 (157)
T 4fry_A 76 KATRVEEIMTAKVRYVEPSQSTDECMALMTEHRMRHLPVLD-G-----GKLIGLISIGDLVKSVIA 135 (157)
T ss_dssp SSCBHHHHSBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEE-T-----TEEEEEEEHHHHHHHHHT
T ss_pred cccCHHHHcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEE-C-----CEEEEEEEHHHHHHHHHH
Confidence 36789999999999999999999999999999999999999 5 899999999999988765
No 120
>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}
Probab=97.69 E-value=4e-05 Score=74.70 Aligned_cols=60 Identities=13% Similarity=0.055 Sum_probs=53.0
Q ss_pred cccccccc--cCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCC-CcEEEEEecccccHHHHHh
Q 003801 708 VDLHPFAN--ASPYTVVETMSLAKALILFREVGLRHLLVIPKISNG-SPVMGILTRHDFMPEHILA 770 (794)
Q Consensus 708 idl~~im~--~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~-g~vvGIITr~Dll~~~~~~ 770 (794)
..++++|+ +.++++++++++.++.++|++.+.+++||+|+ + ++++|+||.+|+++.....
T Consensus 36 ~~v~diM~~~~~v~~v~~~~tv~ea~~~m~~~~~~~~pVvd~---~~~~lvGivt~~Dl~~~~~~~ 98 (173)
T 3ocm_A 36 RSIRSIMTPRTDVSWVNIDDDAATIRQQLTAAPHSFFPVCRG---SLDEVVGIGRAKDLVADLITE 98 (173)
T ss_dssp SCSTTTSEEGGGCCCEETTSCHHHHHHHHHHSSCSEEEEESS---STTSEEEEEEHHHHHHHHHHH
T ss_pred CCHHHhCCcHHHeEEEeCCCCHHHHHHHHHhCCCCEEEEEeC---CCCCEEEEEEHHHHHHHHhcC
Confidence 56788996 46889999999999999999999999999986 5 7999999999999876543
No 121
>2uv4_A 5'-AMP-activated protein kinase subunit gamma-1; transferase, CBS domain, lipid synthesis, fatty acid biosynthesis; HET: AMP; 1.33A {Homo sapiens} PDB: 2uv5_A* 2uv6_A* 2uv7_A*
Probab=97.66 E-value=5.2e-05 Score=71.75 Aligned_cols=58 Identities=16% Similarity=0.237 Sum_probs=52.0
Q ss_pred ceeccccc------cceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHH
Q 003801 597 LTVGDVVT------APLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLK 659 (794)
Q Consensus 597 l~v~diM~------~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~ 659 (794)
.+++++|. +++.++++++++.++++.|.+++.+.+||+|++ ++++|+|+++|+++.+.
T Consensus 87 ~~v~~~m~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-----g~~vGiit~~dil~~l~ 150 (152)
T 2uv4_A 87 VSVTKALQHRSHYFEGVLKCYLHETLETIINRLVEAEVHRLVVVDEN-----DVVKGIVSLSDILQALV 150 (152)
T ss_dssp SBGGGGGGTCCHHHHTCSEECTTSBHHHHHHHHHHHTCSEEEEECTT-----SBEEEEEEHHHHHHHHC
T ss_pred chHHHHHhhhhcccCCCeEECCCCcHHHHHHHHHHcCCeEEEEECCC-----CeEEEEEEHHHHHHHHH
Confidence 46777776 788999999999999999999999999999986 89999999999987653
No 122
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*
Probab=97.48 E-value=7.9e-05 Score=85.75 Aligned_cols=60 Identities=12% Similarity=0.364 Sum_probs=55.4
Q ss_pred cccccccccCCceecCC-CCHHHHHHHHHHcCCCEEEEee-cCCCCCcEEEEEecccccHHHHHh
Q 003801 708 VDLHPFANASPYTVVET-MSLAKALILFREVGLRHLLVIP-KISNGSPVMGILTRHDFMPEHILA 770 (794)
Q Consensus 708 idl~~im~~~p~tV~~~-~sL~~a~~lf~~~glr~LpVVd-~~~~~g~vvGIITr~Dll~~~~~~ 770 (794)
..++++|+++++++.++ +++.++.++|++.+.+++||+| + +++++||||++|+++....+
T Consensus 384 ~~V~diM~~~~vtv~~~~~tv~ea~~~m~~~~~~~lpVvd~~---~g~lvGiVt~~Dll~~l~~~ 445 (527)
T 3pc3_A 384 LAIAELELPAPPVILKSDATVGEAIALMKKHRVDQLPVVDQD---DGSVLGVVGQETLITQIVSM 445 (527)
T ss_dssp SBGGGGCCCCCSCCEETTCBHHHHHHHHHHHTCSEEEEECTT---TCCEEEEEEHHHHHHHHHHH
T ss_pred CcHHHhCcCCCeEEcCCCCcHHHHHHHHHHcCCCeEEEEECC---CCEEEEEEEHHHHHHHHHhc
Confidence 56789999999999999 9999999999999999999999 6 68999999999999887664
No 123
>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A
Probab=97.45 E-value=0.00012 Score=76.92 Aligned_cols=60 Identities=15% Similarity=0.310 Sum_probs=54.4
Q ss_pred cceeccccccceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHh
Q 003801 596 QLTVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKK 660 (794)
Q Consensus 596 ~l~v~diM~~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~ 660 (794)
+.+++++|+++++++++++++.++++.|++++.+.+||||++ ++++|+|+.+|++..+..
T Consensus 198 ~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-----g~lvGivT~~Dil~~i~~ 257 (278)
T 2yvy_A 198 RTRVAEIMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDEE-----GRLVGIVTVDDVLDVLEA 257 (278)
T ss_dssp TCBSTTTSBSSCCCEETTSBHHHHHHHHHHHTCSEEEEECTT-----SBEEEEEEHHHHHHHC--
T ss_pred CCcHHHHhCCCCeEEeCCCCHHHHHHHHHhcCCCEEEEEeCC-----CeEEEEEEHHHHHHHHHH
Confidence 568999999999999999999999999999999999999987 899999999999887653
No 124
>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1
Probab=97.42 E-value=0.00014 Score=76.75 Aligned_cols=60 Identities=17% Similarity=0.315 Sum_probs=55.8
Q ss_pred cceeccccccceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHh
Q 003801 596 QLTVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKK 660 (794)
Q Consensus 596 ~l~v~diM~~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~ 660 (794)
+.+++++|+++++++++++++.++.+.|.+++.+.+||||++ ++++|+|+++|++..+..
T Consensus 200 ~~~v~~im~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~-----g~lvGiIT~~Dil~~i~~ 259 (286)
T 2oux_A 200 DTLIADILNERVISVHVGDDQEDVAQTIRDYDFLAVPVTDYD-----DHLLGIVTVDDIIDVIDD 259 (286)
T ss_dssp TSBHHHHSBSCCCCEETTSBHHHHHHHHHHHTCSEEEEECTT-----CBEEEEEEHHHHHHHHHH
T ss_pred CCcHHHHcCCCCeeecCCCCHHHHHHHHHHcCCcEEEEEcCC-----CeEEEEEEHHHHHHHHHH
Confidence 567999999999999999999999999999999999999987 899999999999987764
No 125
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A
Probab=97.28 E-value=0.00029 Score=79.86 Aligned_cols=61 Identities=15% Similarity=0.300 Sum_probs=56.3
Q ss_pred ccceeccccccceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHh
Q 003801 595 RQLTVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKK 660 (794)
Q Consensus 595 ~~l~v~diM~~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~ 660 (794)
.+.+++|+|+++++++++++++.++.+.|++++.+.+||||++ ++++|+|+++|+++.+..
T Consensus 217 ~~~~v~dim~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVDe~-----g~lvGiIT~~Dil~~i~~ 277 (473)
T 2zy9_A 217 PRTRVAEIMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDEE-----GRLVGIVTVDDVLDVLEA 277 (473)
T ss_dssp TTSBGGGTSBSSCCCEESSSBHHHHHHHHHHHTCSEEEEECTT-----SBEEEEEEHHHHHHHHHH
T ss_pred CCCcHHHHhCCCCeEEeCCCcHHHHHHHHHhcCCcEEEEEcCC-----CEEEEEEehHhhHHHHHH
Confidence 3568999999999999999999999999999999999999987 899999999999987754
No 126
>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*
Probab=97.25 E-value=6.1e-05 Score=86.04 Aligned_cols=60 Identities=20% Similarity=0.266 Sum_probs=0.0
Q ss_pred ccceeccccccc--eeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHH
Q 003801 595 RQLTVGDVVTAP--LQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLK 659 (794)
Q Consensus 595 ~~l~v~diM~~~--vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~ 659 (794)
.+.+++|+|+++ ++++++++++.++++.|++++++.+||||++ ++++|+|+++|+++.+.
T Consensus 159 ~~~~V~diM~~~~~~~tv~~~~sl~ea~~~m~~~~i~~lpVVDe~-----g~lvGiIT~~Dil~~~~ 220 (503)
T 1me8_A 159 TETKVSDMMTPFSKLVTAHQDTKLSEANKIIWEKKLNALPIIDDD-----QHLRYIVFRKDYDRSQV 220 (503)
T ss_dssp -------------------------------------------------------------------
T ss_pred ccCcHHHHhCCCCCCEEEcCCCcHHHHHHHHHHcCCCEEEEEcCC-----CeEEEEEEecHHHHhhh
Confidence 356899999987 9999999999999999999999999999987 89999999999977554
No 127
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=97.20 E-value=0.00093 Score=76.27 Aligned_cols=61 Identities=20% Similarity=0.293 Sum_probs=56.1
Q ss_pred ccceecccccc-ceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHh
Q 003801 595 RQLTVGDVVTA-PLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKK 660 (794)
Q Consensus 595 ~~l~v~diM~~-~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~ 660 (794)
.+.+++|+|++ +++++++++++.++++.|++++.+.+||||++ ++++|+|+++|+++.+..
T Consensus 173 ~~~~V~~vM~~~~~vtv~~~~~l~eal~~m~~~~i~~lpVVDe~-----g~l~GiIT~~Dil~~~~~ 234 (511)
T 3usb_A 173 YSIKISDVMTKEQLITAPVGTTLSEAEKILQKYKIEKLPLVDNN-----GVLQGLITIKDIEKVIEF 234 (511)
T ss_dssp SSSBHHHHCCCCCCCCEETTCCHHHHHHHHHHHTCSEEEEECTT-----SBEEEEEEHHHHHHHHHC
T ss_pred CCCcHHHhcccCCCEEECCCCCHHHHHHHHHHcCCCEEEEEeCC-----CCEeeeccHHHHHHhhhc
Confidence 35679999998 99999999999999999999999999999987 899999999999887654
No 128
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=96.75 E-value=0.00069 Score=77.02 Aligned_cols=54 Identities=20% Similarity=0.255 Sum_probs=48.3
Q ss_pred cccccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCcEEEEEeccccc
Q 003801 708 VDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHDFM 764 (794)
Q Consensus 708 idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~vvGIITr~Dll 764 (794)
...+++|.++|+++++++++.++.++|++.+.+.+||+|+ +++++||||++|+.
T Consensus 89 k~~~~~m~~d~v~v~~~~tv~ea~~~m~~~~~s~~PVvd~---~~~lvGiVt~rDL~ 142 (496)
T 4fxs_A 89 KIFEAGVVTHPVTVRPEQTIADVMELTHYHGFAGFPVVTE---NNELVGIITGRDVR 142 (496)
T ss_dssp HHCCC--CBCCCCBCSSSBHHHHHHHHTSSCCCEEEEECS---SSBEEEEEEHHHHT
T ss_pred cccccccccCceEECCCCCHHHHHHHHHHcCCcEEEEEcc---CCEEEEEEEHHHHh
Confidence 3456789999999999999999999999999999999997 78999999999997
No 129
>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1
Probab=96.58 E-value=0.0026 Score=72.32 Aligned_cols=60 Identities=17% Similarity=0.214 Sum_probs=55.7
Q ss_pred cceecccccc-ceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHh
Q 003801 596 QLTVGDVVTA-PLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKK 660 (794)
Q Consensus 596 ~l~v~diM~~-~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~ 660 (794)
+.+++|+|++ +++++++++++.++++.|.+++.+.+||||++ ++++|+|+++|+++.+..
T Consensus 151 ~~~v~~im~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~-----g~lvGivt~~Dil~~~~~ 211 (491)
T 1zfj_A 151 NAPISEHMTSEHLVTAAVGTDLETAERILHEHRIEKLPLVDNS-----GRLSGLITIKDIEKVIEF 211 (491)
T ss_dssp SSBTTTSCCCSCCCCEETTCCHHHHHHHHHHTTCSEEEEECTT-----SBEEEEEEHHHHHHHHHC
T ss_pred CCcHHHHcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCC-----CcEEEEEEHHHHHHHHhc
Confidence 5678999998 89999999999999999999999999999987 899999999999988764
No 130
>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1
Probab=96.43 E-value=0.00052 Score=78.21 Aligned_cols=56 Identities=23% Similarity=0.247 Sum_probs=2.0
Q ss_pred ccccccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCcEEEEEecccccH
Q 003801 707 YVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHDFMP 765 (794)
Q Consensus 707 ~idl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~vvGIITr~Dll~ 765 (794)
..+++++|.++++++++++++.++.++|++.+.+.+||+|+ +++++|+||++|+.+
T Consensus 94 v~~~~~iM~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~---~~~lvGivt~~Dl~~ 149 (494)
T 1vrd_A 94 VKKTENGIIYDPITVTPDMTVKEAIDLMAEYKIGGLPVVDE---EGRLVGLLTNRDVRF 149 (494)
T ss_dssp HHTC-------------------------------------------------------
T ss_pred hhhHhhcCccCCeEECCCCCHHHHHHHHHHcCceEEEEEcC---CCEEEEEEEHHHHHh
Confidence 34567889999999999999999999999999999999997 789999999999975
No 131
>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*
Probab=96.35 E-value=0.00059 Score=76.50 Aligned_cols=57 Identities=21% Similarity=0.302 Sum_probs=0.0
Q ss_pred cceeccccccceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHH
Q 003801 596 QLTVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITL 657 (794)
Q Consensus 596 ~l~v~diM~~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~l 657 (794)
+.+++|+|+++++++++..+++++.++|.+++...+||||++ ++|+|+|+++|+.+.
T Consensus 199 ~~~V~evMT~~lvt~~~~~~leeA~~iL~~~kieklpVVd~~-----g~LvGlIT~kDi~k~ 255 (556)
T 4af0_A 199 ETPIKSVMTTEVVTGSSPITLEKANSLLRETKKGKLPIVDSN-----GHLVSLVARSDLLKN 255 (556)
T ss_dssp --------------------------------------------------------------
T ss_pred ceEhhhhcccceEEecCCCCHHHHHHHHHHccccceeEEccC-----CcEEEEEEechhhhh
Confidence 468999999999999999999999999999999999999998 999999999999553
No 132
>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1
Probab=96.20 E-value=0.0022 Score=72.91 Aligned_cols=58 Identities=21% Similarity=0.288 Sum_probs=0.0
Q ss_pred cceeccccccceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHH
Q 003801 596 QLTVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLL 658 (794)
Q Consensus 596 ~l~v~diM~~~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL 658 (794)
+.+++|+|+++++++++++++.++++.|++++.+.+||||++ ++++|+|+++|+++.+
T Consensus 149 ~~~v~~im~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVde~-----g~lvGiiT~~Dil~~~ 206 (486)
T 2cu0_A 149 GKLVKELMTKEVITVPESIEVEEALKIMIENRIDRLPVVDER-----GKLVGLITMSDLVARK 206 (486)
T ss_dssp ---------------------------------------------------------------
T ss_pred CCCHHHHccCCCeEECCcCcHHHHHHHHHHcCCCEEEEEecC-----CeEEEEEEHHHHHHhh
Confidence 568999999999999999999999999999999999999987 8999999999997653
No 133
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=95.99 E-value=0.0011 Score=75.15 Aligned_cols=61 Identities=21% Similarity=0.116 Sum_probs=0.4
Q ss_pred ccceeccccc-c-ceeEEeccccHHHHHHHHhcCCCCeeEEeeCCCCCCCCeEEEEEeHHHHHHHHHh
Q 003801 595 RQLTVGDVVT-A-PLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKK 660 (794)
Q Consensus 595 ~~l~v~diM~-~-~vv~l~~~~sv~~a~~~L~~~~~~~fPVVd~~~~~~~~~l~GiI~r~dL~~lL~~ 660 (794)
.+.+++|+|+ + +++++++++++.++.++|++++.+.+||||++ ++++|+|+++|+++..+.
T Consensus 145 ~~~~V~~vMtp~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe~-----g~lvGiIT~~Dil~~~~~ 207 (490)
T 4avf_A 145 AGDTVAAIMTPKDKLVTAREGTPLEEMKAKLYENRIEKMLVVDEN-----FYLRGLVTFRDIEKAKTY 207 (490)
T ss_dssp -------------------------------------------------------------------C
T ss_pred cCCcHHHHhccCCCCEEECCCCcHHHHHHHHHHcCCCEEEEEcCC-----CcEEEEEehHHhhhhccC
Confidence 3568999999 4 69999999999999999999999999999987 899999999999776543
No 134
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=95.81 E-value=0.0019 Score=73.99 Aligned_cols=58 Identities=16% Similarity=0.160 Sum_probs=28.5
Q ss_pred ccccccccCCceecCCCCHHHHHHHHHHcCCCEEEEeecCCCCCcEEEEEecccccHH
Q 003801 709 DLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHDFMPE 766 (794)
Q Consensus 709 dl~~im~~~p~tV~~~~sL~~a~~lf~~~glr~LpVVd~~~~~g~vvGIITr~Dll~~ 766 (794)
.++++|.++|+++++++++.++.++|++.+.+.+||+|+...+++++|+||++|+...
T Consensus 109 ~~~~im~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~~lvGiVt~~Dl~~~ 166 (514)
T 1jcn_A 109 NFEQGFITDPVVLSPSHTVGDVLEAKMRHGFSGIPITETGTMGSKLVGIVTSRDIDFL 166 (514)
T ss_dssp TCCTTSCSSCCCCCC-----------------CEESCC--------CCEECTTTTC--
T ss_pred hhhhccccCCEEECCCCCHHHHHHHHHhcCCCEEEEEeCCCcCCEEEEEEEHHHHHhh
Confidence 4678898999999999999999999999999999999851013799999999999763
No 135
>2pq4_B Periplasmic nitrate reductase precursor; NAPD/NAPA1-35, mixed beta-alpha sandwich structure, protein- peptide complex, alpha-helix; NMR {Escherichia coli}
Probab=36.14 E-value=17 Score=24.97 Aligned_cols=24 Identities=38% Similarity=0.484 Sum_probs=18.5
Q ss_pred hhhhHHHHhhhhhhhhhhcccchh
Q 003801 250 DRRDFVTCGSAAGIAAAFRAPVGG 273 (794)
Q Consensus 250 ~~r~lv~~GaaAGvaaaF~APigG 273 (794)
.||+|+-..++++.+++.+.++.+
T Consensus 4 sRR~FLK~~aaa~Aaaaag~~~~~ 27 (35)
T 2pq4_B 4 SRRSFMKANAVAAAAAAAGLSVPG 27 (35)
T ss_dssp CSHHHHHHHHHHHHHHHHCCCCSS
T ss_pred cHHHHHHHHHHHHHHHHhcccchh
Confidence 599999888887777777776654
No 136
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=32.70 E-value=95 Score=25.11 Aligned_cols=33 Identities=15% Similarity=0.392 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 003801 90 IQYIFMKWSLCFLIGLI-VGLIGFLNNLAVENIA 122 (794)
Q Consensus 90 ~~~~~~~w~~~~liGv~-~Gl~a~~~~~~i~~~~ 122 (794)
-+.++.+...+..+|++ +|++++++......+.
T Consensus 30 dr~EF~~iak~~~iG~~imG~IGfiIkli~ipIn 63 (74)
T 1rh5_B 30 TKDEYLAVAKVTALGISLLGIIGYIIHVPATYIK 63 (74)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34456677777777765 4999988887654443
No 137
>2ww9_B Protein transport protein SSS1; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B
Probab=32.52 E-value=92 Score=25.59 Aligned_cols=44 Identities=23% Similarity=0.193 Sum_probs=26.0
Q ss_pred hhhHHHHhh--hccchhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q 003801 75 DFFKEDWRT--RGRNQMIQYIFMKWSLCFLIGLI-VGLIGFLNNLAV 118 (794)
Q Consensus 75 ~~~~~~~~~--~~~~~~~~~~~~~w~~~~liGv~-~Gl~a~~~~~~i 118 (794)
.-|.++|++ +...+.-+..+.+...+..+|++ +|++++++....
T Consensus 26 ~~f~kd~~rvlk~~~KPdr~Ef~~iak~t~iG~~imG~IGfiIkLI~ 72 (80)
T 2ww9_B 26 VEFVREGTQFLAKCKKPDLKEYTKIVKAVGIGFIAVGIIGYAIKLIH 72 (80)
T ss_dssp HHHHHHHHHHHHSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334456643 12223344556677777788875 488888876543
No 138
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=26.44 E-value=59 Score=23.54 Aligned_cols=23 Identities=26% Similarity=0.281 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 003801 343 LVLLLGVVGGILGSLYNFLLDKV 365 (794)
Q Consensus 343 ~~illGv~~Gl~g~~f~~~~~~~ 365 (794)
..+..|+++|+++.+..-+..++
T Consensus 10 ~aIA~gVVgGv~~v~ii~~~~~~ 32 (44)
T 2l2t_A 10 PLIAAGVIGGLFILVIVGLTFAV 32 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEeehHHHHHHHHHHHHHHH
Confidence 34678888888887766555443
Done!