RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 003801
(794 letters)
>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon
merolae}
Length = 632
Score = 487 bits (1255), Expect = e-163
Identities = 141/692 (20%), Positives = 264/692 (38%), Gaps = 86/692 (12%)
Query: 90 IQYIFMKWSLCFLIGLIVGLIGFLNNLAVENIAGTKFVVTSNMMLANKFGMAFLSFSIPN 149
+ Y+ L+G+ L F +LAV + + ++ ++ + +
Sbjct: 4 LMYLLRLVCFLTLLGVTAALFIFAVDLAVHGLEELRMKISRLA----GRFAGYILYVVSG 59
Query: 150 LVLTLFASIVTATVAPVAAGSGIPEVKAYLNGV--DAPGILSFRTLVIKIIGSISAVSSS 207
+ L L ++ A ++ A GSG+P++K+ L+G L R L K +G I A+
Sbjct: 60 VALCLLSTFWCAVLSTEAEGSGLPQMKSILSGFYDKMRSALELRVLFAKALGLICAIGGG 119
Query: 208 LLVGKAGPMVHTGACVASLLGQGGSKKYGLTWKWLRFFKNDRDRRDFVTCGSAAGIAAAF 267
L VG GP VH +A + G + + R + A G+A++F
Sbjct: 120 LPVGWEGPNVHIACIIAHQFYRLGV--------FKELCTDRALRLQTLAAACAVGLASSF 171
Query: 268 RAPVGGLLFAIEEMASWWRSALLWRAFFTTAIVAILLRAFIDICKSGKCGLFGTGGLIMY 327
AP+GG+L++IE +AS++ W+ + AI+ + T + +
Sbjct: 172 GAPLGGVLYSIETIASFYLVQAFWKGVLSALSGAIVYELL-----------YTTPLVEAF 220
Query: 328 DV-YSADASYHLADVPLVLLLGVVGGILGSLYNFLLDKVLRIYNFINEKGIAPKIFLACT 386
+ + L +LG + G+LG+L+ + + + + + FL
Sbjct: 221 EGTNFDASDVSRTQTLLYAILGALMGVLGALFIRCVRSIYELR--MRHYPGTNRYFLVGV 278
Query: 387 ISILTSCLLFGLPWLASCRPCPSDASEACPTIGRSGNYKKFQCAPGYYNDLASLIFNTND 446
+++ S L + NDL +
Sbjct: 279 VALFASALQYPFRLF-------------------------ALDPRATINDLFKAVPLYQT 313
Query: 447 DAIRNLFSKDTDKEFQHSSMLIFFVTCFSLSVLSYGIVAPAGLFVPAIVTGASYGRFVGM 506
D F + +++ + F L LS G+ PAG+FVP+ + GA +GR G
Sbjct: 314 D------------HFGWTELILMPIIKFILVALSIGLPLPAGVFVPSFLIGAGFGRLYGE 361
Query: 507 LVGS--HSNLNHGLYAVLGAASFLGGSMRMTVSLCVIILELTNNLLLLPMIMLVLLISKT 564
L+ + + G YAV+GAA+F G R +S VII E+T + L +++ +L++
Sbjct: 362 LMRVVFGNAIVPGSYAVVGAAAFTAGVTR-ALSCAVIIFEVTGQIRHLVPVLISVLLAVI 420
Query: 565 VADAFNGNIYDLIMKAKGFPYLETHVEPYMRQLTVGDVVTA--PLQLFHGIEKAGNVVHV 622
V +AFN ++Y+ ++ K PY+ ++T +++ + ++ +
Sbjct: 421 VGNAFNRSLYETLVLMKHLPYMPILRRDRSPEMTAREIMHPIEGEPHLFPDSEPQHIKGI 480
Query: 623 L-RTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNPTVNDAFSQFSAV 681
L + FPVID N L G I R ++ L+ + A
Sbjct: 481 LEKFPNRLVFPVIDAN-----GYLLGAISRKEIVDRLQHVLEDVPEPIAGHRTLVLLDAA 535
Query: 682 DFAKRGSGNGDK------IEDIELSEEEMEMYVDLHPFANASPYTVVETMSLAKALILFR 735
D ++ G D+ + + +E L + SP V + + LF
Sbjct: 536 DLSENIEGLVDETPSGEHSSKGKRTATVLEPTSSLVVPCDVSPIVVTSYSLVRQLHFLFV 595
Query: 736 EVGLRHLLVIPKISNGSPVMGILTRHDFMPEH 767
+ + V ++GI+ R D +
Sbjct: 596 MLMPSMIYVT----ERGKLVGIVEREDVAYGY 623
>1ots_A Voltage-gated CLC-type chloride channel ERIC; CLC chloride channel,
FAB complex, membrane protein; 2.51A {Escherichia coli}
SCOP: f.20.1.1 PDB: 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A
2htl_A 3ejy_A 2ht2_A 2fed_A 2fec_A 1otu_A 3ejz_A 2ht4_A
2htk_A 2ht3_A 1ott_A 2h2s_A 3det_A 2ez0_A 3nmo_A ...
Length = 465
Score = 198 bits (504), Expect = 8e-56
Identities = 101/500 (20%), Positives = 188/500 (37%), Gaps = 76/500 (15%)
Query: 84 RGRNQMIQYIFMKWSLCFLIGLIVGLIGFLNNLAVENIAGTKFVVTSNMMLANKFGMAFL 143
R + + + ++G +VGL + V + + + + A+ + +
Sbjct: 23 RQLLERDKTPLAILFMAAVVGTLVGLAAVAFDKGVAWL--QNQRMGALVHTADNYPLLLT 80
Query: 144 SFSIPNLVLTLFASIVTATVAPVAAGSGIPEVKAYLNGVDAPGILSFRTLVIKIIGSISA 203
+ + VL +F + AP A GSGIPE++ L + +R L +K G +
Sbjct: 81 VAFLCSAVLAMFGYFLVRKYAPEAGGSGIPEIEGALEDQ--RPVRWWRVLPVKFFGGLGT 138
Query: 204 VSSSLLVGKAGPMVHTGACVASLLGQGGSKKYGLTWKWLRFFKNDRDRRDFVTCGSAAGI 263
+ +++G+ GP V G + ++ R K D R + G+AAG+
Sbjct: 139 LGGGMVLGREGPTVQIGGNIGRMVLD-----------IFRL-KGDEARHTLLATGAAAGL 186
Query: 264 AAAFRAPVGGLLFAIEEMASWWRSALLWRAFFTTAIVAILLRAFIDICKSGKCGLFGTGG 323
AAAF AP+ G+LF IEEM +R L+ + +++ +
Sbjct: 187 AAAFNAPLAGILFIIEEMRPQFRYTLIS---IKAVFIGVIMSTIM------YRIFNHEVA 237
Query: 324 LIMYDVYSADASYHLADVPLVLLLGVVGGILGSLYNFLLDKVLRIYNFINEKGIAPKIFL 383
LI S L + L L+LG++ GI G ++N + + + + ++ I + +
Sbjct: 238 LIDVGKLSD---APLNTLWLYLILGIIFGIFGPIFNKWVLGMQDLLHRVHGGNITKWVLM 294
Query: 384 ACTISILTSCLLFGLPWLASCRPCPSDASEACPTIGRSGNYKKFQCAPGYYNDLASLIFN 443
I L L F P
Sbjct: 295 GGAIGGLCGLLGFVAPA----------------------------------------TSG 314
Query: 444 TNDDAIRNLFSKDTDKEFQHSSMLIFFVTCFSLSVLSYGIVAPAGLFVPAIVTGASYGRF 503
+ I F ++ FV ++L + AP G+F P + G G
Sbjct: 315 GGFNLIPIAT----AGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTA 370
Query: 504 VGMLVGS---HSNLNHGLYAVLGAASFLGGSMRMTVSLCVIILELTNNLLLLPMIMLVLL 560
GM+ +L G +A+ G + L S+R ++ +++LE+T+N L+ +++ L
Sbjct: 371 FGMVAVELFPQYHLEAGTFAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMIITGL 430
Query: 561 ISKTVADAFNGN-IYDLIMK 579
+ +A G +Y I+
Sbjct: 431 GATLLAQFTGGKPLYSAILA 450
>3nd0_A SLL0855 protein; CLC family CL-/H+ antiporter, CLC_EC1 homolog,
transport protein; 3.20A {Synechocystis} PDB: 3q17_A
Length = 466
Score = 189 bits (483), Expect = 6e-53
Identities = 90/482 (18%), Positives = 189/482 (39%), Gaps = 82/482 (17%)
Query: 99 LCFLIGLIVGLIGFLNNLAVENIAGTKFVVTSNMMLANKFGMAFLSFSIPNLVLTLFASI 158
++GLI G++G AV N+ ++ +LA +A+L ++ + + +
Sbjct: 34 AAIVVGLITGVLGAGFKSAVNNM--LQWRSQLAQILAPIPPLAWLVTALISGGMVALSFW 91
Query: 159 VTATVAPVAAGSGIPEVKAYLNGVDAPGILSFRTLVIKIIGSISAVSSSLLVGKAGPMVH 218
+ AP +GSGIP+++ +L G ++ R L IK++G ++ + +L G GP +
Sbjct: 92 LMKRFAPDTSGSGIPQIEGHLEG--KLPLVWQRVLPIKLVGGFLSLGAGMLAGFEGPTIQ 149
Query: 219 TGACVASLLGQGGSKKYGLTWKWLRFFKNDRDRRDFVTCGSAAGIAAAFRAPVGGLLFAI 278
G + + G W + ++R + G+ AG+A AF AP+ G+
Sbjct: 150 MGGSIGQMTGG-----------WFKA--TQENQRILIAVGAGAGLATAFNAPLAGVALIG 196
Query: 279 EEMASWWRSALL-WRAFFTTAIVAILLRAFIDICKSGKCGLFGTGGLIMYDVYSADASYH 337
EEM +RS L + + ++A ++ I G +I +
Sbjct: 197 EEMHPRFRSQTLAYHSLLFGCVMATIILRMI----------RGQSAIISLTEFKR---VP 243
Query: 338 LADVPLVLLLGVVGGILGSLYNFLLDKVLRIYNFINEKGIAPKIFLACTISILTSCLLFG 397
L + + ++LG++ G++G +N L KVL ++ + + + + L
Sbjct: 244 LDSLWMFIILGILFGVMGYTFNRGLFKVLDWFDRLP---PLATKWKGFLLGSIIGILSLF 300
Query: 398 LPWLASCRPCPSDASEACPTIGRSGNYKKFQCAPGYYNDLASLIFNTNDDAIRNLFSKDT 457
L G N +
Sbjct: 301 PLPLTD----------------------------GGDNAVLWAF---------------- 316
Query: 458 DKEFQHSSMLIFFVTCFSLSVLSYGIVAPAGLFVPAIVTGASYGRFVGMLVGS---HSNL 514
+ + S++++ F F L+++ YG A G+F P + + +
Sbjct: 317 NSQSHFSTLILVFCGRFLLTLICYGSGAIGGIFAPMLGIASIVSVAMARHFHLLFPSQIP 376
Query: 515 NHGLYAVLGAASFLGGSMRMTVSLCVIILELTNNLLLLPMIMLVLLISKTVADAFNGN-I 573
+ A+ G + + ++R ++ ++ +E+T+N ++ +++ L++ VA+A G I
Sbjct: 377 EPAVMAIAGMGALVAATVRAPLTAILLTIEMTDNYFVILPLLVTCLVASVVAEALGGKPI 436
Query: 574 YD 575
Y
Sbjct: 437 YT 438
>2j9l_A Chloride channel protein 5; ION channel, ION transport,
voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP:
d.37.1.1 PDB: 2ja3_A*
Length = 185
Score = 109 bits (275), Expect = 7e-28
Identities = 36/180 (20%), Positives = 68/180 (37%), Gaps = 30/180 (16%)
Query: 591 EPYMRQLTVGDVVTAPLQ------LFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPI 644
E + + DV+ L +V ++ T ++GFPV+ E+
Sbjct: 5 EEFAHKTLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSR---ESQR 61
Query: 645 LYGLILRAHLITLLKKKAFLPTPNPTVNDAFSQFSAVDFAKRGSGNGDKIEDIELSEEEM 704
L G +LR LI ++ + V+ + F+ E
Sbjct: 62 LVGFVLRRDLIISIENARK--KQDGVVSTSIIYFT---------------EHSPPLPPYT 104
Query: 705 EMYVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHDFM 764
+ L + SP+TV + + + +FR++GLR LV + ++GI+T+ D +
Sbjct: 105 PPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVT----HNGRLLGIITKKDVL 160
>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase
(CBS) domains containing protein, transport protein;
1.60A {Homo sapiens}
Length = 164
Score = 58.9 bits (142), Expect = 3e-10
Identities = 27/167 (16%), Positives = 56/167 (33%), Gaps = 38/167 (22%)
Query: 596 QLTVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLI 655
+ V + + VV V+ +T +P+++ E+ IL G++ RA L+
Sbjct: 12 HVRVEHFMNHSITTLAKDTPLEEVVKVVTSTDVTEYPLVEST---ESQILVGIVQRAQLV 68
Query: 656 TLLKKKAFLPTPNPTVNDAFSQFSAVDFAKRGSGNGDKIEDIELSEEEMEMYVDLHPFAN 715
L+ + P ++ ++ +
Sbjct: 69 QALQAEPPSRAPG-------------------------------HQQCLQDILARGCPTE 97
Query: 716 ASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHD 762
T+ +L +A LF+ + L+ L V S G V G ++ +
Sbjct: 98 PVTLTLFSETTLHQAQNLFKLLNLQSLFV---TSRGRAV-GCVSWVE 140
>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain,
CBS domains, ION CH regulatory subunit, transport
protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1
Length = 250
Score = 58.6 bits (140), Expect = 1e-09
Identities = 38/202 (18%), Positives = 68/202 (33%), Gaps = 23/202 (11%)
Query: 579 KAKGFPYLETHVEPYM--------------RQLTVGDVVTAPLQLFHGIEKAGNVVHVLR 624
K K FP+++T + R+++ A + G
Sbjct: 43 KLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRRISAYRRQPAAAAEADEEGRNGETGASFT 102
Query: 625 TTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNPTVNDAFSQFSAVDFA 684
+ F ID+ +E GL + + +P PT Q
Sbjct: 103 GEAESSFAYIDQED-AEGQQREGLEAVKVQTEDPRPPSPVPAEEPTQTSGIYQKKQKGTG 161
Query: 685 KRGSGNGD--KIEDI-ELSEEEMEMYVDLHPFA-NASPYTVVETMSLAKALILFREVGLR 740
+ S + +E+I + E + V+ + SP+ +VE SL K LF +GL
Sbjct: 162 QVASRFEEMLTLEEIYRWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLLGLD 221
Query: 741 HLLVIPKISNGSPVMGILTRHD 762
V S G ++G++ +
Sbjct: 222 RAYV---TSMGK-LVGVVALAE 239
Score = 43.9 bits (102), Expect = 8e-05
Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 6/79 (7%)
Query: 584 PYL-ETHVEPYMRQLTVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSET 642
P L + Y + VGD++ + G+++HVLR T+ FP +D +T
Sbjct: 1 PELSWSSANKY--NIQVGDIMVRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDTP---DT 55
Query: 643 PILYGLILRAHLITLLKKK 661
L G I R + LL+++
Sbjct: 56 NTLLGSIDRTEVEGLLQRR 74
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 50.6 bits (120), Expect = 2e-06
Identities = 69/436 (15%), Positives = 117/436 (26%), Gaps = 144/436 (33%)
Query: 434 YNDLASLI-------FNTND--DAIRNLFSKDTDKEFQH---------SSMLIFFVTC-- 473
Y D+ S+ F+ D D +++ SK +E H ++ +F+
Sbjct: 18 YKDILSVFEDAFVDNFDCKDVQDMPKSILSK---EEIDHIIMSKDAVSGTLRLFWTLLSK 74
Query: 474 -------FSLSVLS--YGIVAPAGLFVPAIVTGASYGRFVGMLVGSHSNLNHGLYAVLGA 524
F VL Y + + ++ L +
Sbjct: 75 QEEMVQKFVEEVLRINYKFLMSP-IKTEQRQPSMMTRMYIE----QRDRLYND------N 123
Query: 525 ASFLGGSMRMTVSLCVIILELTNNLL-LLPMIMLVL----------LISKTVAD-----A 568
F + VS L+L LL L P +++ +
Sbjct: 124 QVF----AKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCK 179
Query: 569 FNGNIYDLIMKAKGFPYLETHVEPYMRQLTVGDVVTAPLQ-LFHGIEKAGNVVHVLRTTR 627
+ I+ +L ++ + V LQ L +
Sbjct: 180 MDFKIF----------WLN------LKNCNSPETVLEMLQKLLY---------------- 207
Query: 628 HNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNPT-------VNDAFSQFSA 680
ID N S + + LR H I ++ P V +A ++A
Sbjct: 208 -----QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA-KAWNA 261
Query: 681 VDF-AK-----RGSGNGDKIEDIELSEEEMEMYVDLHPFANASPYTVVETMSL-AKAL-- 731
+ K R D + + ++ + T E SL K L
Sbjct: 262 FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSM--------TLTPDEVKSLLLKYLDC 313
Query: 732 ---ILFREVGLRHLLVIPKISNGSPVMGILTRHDFMP-------EHIL-----ALNPLLA 776
L REV + + I + L D I+ L P
Sbjct: 314 RPQDLPREVLTTNPRRLSII--AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEY 371
Query: 777 RSRWKRLRIRFPPSLK 792
R + RL + FPPS
Sbjct: 372 RKMFDRLSV-FPPSAH 386
Score = 34.1 bits (77), Expect = 0.22
Identities = 73/544 (13%), Positives = 147/544 (27%), Gaps = 169/544 (31%)
Query: 350 VGGILGSLYNFLLDKV----------LRIY-----NFINEKGIAPKIFL--ACTISILTS 392
V +L Y FL+ + R+Y N+ + K + L
Sbjct: 83 VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQ 142
Query: 393 CL----------LFGLP-----WLAS--CRPCPSDASEACPTIG----RSGNYKK----- 426
L + G+ W+A C S + N
Sbjct: 143 ALLELRPAKNVLIDGVLGSGKTWVALDVCL---SYKVQCKMDFKIFWLNLKNCNSPETVL 199
Query: 427 -------FQCAPGYY---NDLASLIFNTND--DAIRNLFSKDTDKEFQHSSMLI------ 468
+Q P + + +++ + +R L K +++ +L+
Sbjct: 200 EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK---SKPYENC-LLVLLNVQN 255
Query: 469 ------FFVTCFSLSVLSYGIVAPAGLFVPAIVTG-ASYGRFVGMLVGSHSNLNH---GL 518
F ++C +L + T F+ +H +L+H L
Sbjct: 256 AKAWNAFNLSC---KIL--------------LTTRFKQVTDFLSAATTTHISLDHHSMTL 298
Query: 519 Y-----AVLGAASFLGGSMRMTVSLCVIILEL-----TNNLLLLPMIMLVLLISKTVADA 568
++L +L +L T N L +I + D
Sbjct: 299 TPDEVKSLL--LKYLD----------CRPQDLPREVLTTNPRRLSIIAESIRDGLATWDN 346
Query: 569 FNGNIYDLIMKA--KGFPYLETH-VEPYMRQLTV--GDV-VTAP-LQLFHGIEKAGNVVH 621
+ D + LE +L+V + L L + + V
Sbjct: 347 WKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWF-DVIKSDVM 405
Query: 622 VLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNPTVNDAFSQFSAV 681
V+ H + ++++ P T + + L L K + ++ D ++
Sbjct: 406 VVVNKLHK-YSLVEKQPKESTISIPSIYLE-----LKVKLENEYALHRSIVDHYNIPKTF 459
Query: 682 DFAKRGSGNGDK---------IEDIELSEEEMEM---YVDLHPFANASPYTVVETMSLAK 729
D D+ +++IE E ++D
Sbjct: 460 DSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFR------------------ 501
Query: 730 ALILFREVGLRHLLVIPKISNGSPVMGILTRHDFMPEHILALNPLLARSRWKRLRIRFPP 789
F E +RH + ++ L + F +I +P R + F P
Sbjct: 502 ----FLEQKIRH--DSTAWNASGSILNTLQQLKFYKPYICDNDP--KYERLVNAILDFLP 553
Query: 790 SLKP 793
++
Sbjct: 554 KIEE 557
>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox
regulator, plant CBS domain, thiored chloroplast,
membrane protein; 1.91A {Arabidopsis thaliana}
Length = 180
Score = 48.2 bits (115), Expect = 2e-06
Identities = 39/175 (22%), Positives = 63/175 (36%), Gaps = 34/175 (19%)
Query: 597 LTVGDVVTAPLQLF-----HGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILR 651
TVGD +T L ++ A + +L + G PVID+N L G++
Sbjct: 4 YTVGDFMTPRQNLHVVKPSTSVDDA---LELLVEKKVTGLPVIDDNW-----TLVGVVSD 55
Query: 652 AHLITLLKKKAFLPTPNPTVNDAFSQFSAVDFAKRGSG--NGDKIEDIELSEEEMEMYVD 709
L+ L D S + + ++ G + D+ M
Sbjct: 56 YDLLALDSISGRSQNDTNLFPDVDSTWKTFNELQKLISKTYGKVVGDL--------M--- 104
Query: 710 LHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHDFM 764
SP V ++ +L A L E R L V+ +G + GILTR + +
Sbjct: 105 -----TPSPLVVRDSTNLEDAARLLLETKFRRLPVVDA--DGKLI-GILTRGNVV 151
Score = 35.1 bits (81), Expect = 0.043
Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Query: 718 PYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHDFMP 765
+ V + S+ AL L E + L VI N + V G+++ +D +
Sbjct: 16 LHVVKPSTSVDDALELLVEKKVTGLPVIDD--NWTLV-GVVSDYDLLA 60
>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR
fold, structural genomics, joint center for structural
genomics, JCSG; 1.87A {Thermotoga maritima} SCOP:
d.37.1.1
Length = 157
Score = 45.7 bits (109), Expect = 8e-06
Identities = 23/171 (13%), Positives = 48/171 (28%), Gaps = 35/171 (20%)
Query: 594 MRQLTVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAH 653
M+ V +++ + +V + + + L G+I H
Sbjct: 13 MKVKDVCKLISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDN-----KLVGMIPVMH 67
Query: 654 LITLLKKKAFLPTPNPTVNDAFSQFSAVDFAKRGSGNGDKIEDIELSEEEMEMYVDLHPF 713
L+ + F P + + + +I M
Sbjct: 68 LLKVSGFHFFGFIPKEELIRS-------SMKRLI---AKNASEI--------M------- 102
Query: 714 ANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHDFM 764
P V L +AL L + ++ + V+ + G V G L + +
Sbjct: 103 --LDPVYVHMDTPLEEALKLMIDNNIQEMPVVDE--KGEIV-GDLNSLEIL 148
Score = 35.7 bits (83), Expect = 0.018
Identities = 7/69 (10%), Positives = 22/69 (31%), Gaps = 3/69 (4%)
Query: 718 PYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHDFMPEHILALNPLLAR 777
P V E + + + E + + + + + V G++ + + +
Sbjct: 26 PTVVEEDTPIEEIVDRILEDPVTRTVYVAR--DNKLV-GMIPVMHLLKVSGFHFFGFIPK 82
Query: 778 SRWKRLRIR 786
R ++
Sbjct: 83 EELIRSSMK 91
>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown
function; HET: ADP AMP; 2.10A {Methanocaldococcus
jannaschii} PDB: 3lfz_A*
Length = 280
Score = 43.2 bits (102), Expect = 2e-04
Identities = 25/197 (12%), Positives = 55/197 (27%), Gaps = 33/197 (16%)
Query: 597 LTVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDEN-----PLSETPILYGLILR 651
V +++ + + T G P++++ ++E ++ L+ +
Sbjct: 84 EPVREIMEENVITLKENADIDEAIETFLTKNVGGAPIVNDENQLISLITERDVIRALLDK 143
Query: 652 AHLITLLKKKAFLP----TPNPTVNDAFSQF--------------------SAVDFAKRG 687
++ TP + D ++ DF K
Sbjct: 144 IDENEVIDDYITRDVIVATPGERLKDVARTMVRNGFRRLPVVSEGRLVGIITSTDFIKLL 203
Query: 688 SGNGDKIEDIELSEEEMEMYVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPK 747
+ + E+ V + T E L K + + L V+ +
Sbjct: 204 GSDWAFNHMQTGNVREITN-VRMEEIMKRDVITAKEGDKLKKIAEIMVTNDIGALPVVDE 262
Query: 748 ISNGSPVMGILTRHDFM 764
N GI+T D +
Sbjct: 263 --NLRIK-GIITEKDVL 276
Score = 35.5 bits (82), Expect = 0.046
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 718 PYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHDFM 764
TV T ++ KAL+ E R L V+ N V GI+T D +
Sbjct: 14 IVTVYPTTTIRKALMTMNENKYRRLPVV-NAGNNKVV-GIITSMDIV 58
>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding
protein, ligand-BIND protein; 2.10A {Pyrobaculum
aerophilum} SCOP: d.37.1.1 PDB: 2rif_A
Length = 141
Score = 39.6 bits (93), Expect = 7e-04
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 717 SPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHDFM 764
SP TV++T + A R +RH++V+ K NG V G+L+ D
Sbjct: 79 SPITVLDTDPVHVAAEKMRRHNIRHVVVVNK--NGELV-GVLSIRDLC 123
Score = 33.8 bits (78), Expect = 0.076
Identities = 6/47 (12%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 718 PYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHDFM 764
P ++ ET ++ + + + ++ + + PV +++ D +
Sbjct: 15 PVSLPETATIREVATELAKNRVGLAVLTARDNPKRPV-AVVSERDIL 60
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 41.6 bits (97), Expect = 0.001
Identities = 51/323 (15%), Positives = 93/323 (28%), Gaps = 107/323 (33%)
Query: 3 TQPPTEKMATAAAFENLNT-----AGVEGGQ-DPES----LTVPLLSHQRSRSSISNSTS 52
+ P +K + +A F + + GGQ + + L R +
Sbjct: 133 AKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEEL--------RDLYQTYHV-- 182
Query: 53 QVALVGADVCPIESLDYEIAENDFFKEDWRTRGRNQMIQYIFMKW--------SLCFLIG 104
LVG + E+ E T+G N ++W +L+
Sbjct: 183 ---LVGDLIKFSAETLSELIRTTLDAEKVFTQGLN------ILEWLENPSNTPDKDYLLS 233
Query: 105 ------LIVGLIGFLNNLAVENIAGTKFVVTSNMMLANKFGMAFLSFSIPNLVLTLFASI 158
LI G+I + + + G T + + G +
Sbjct: 234 IPISCPLI-GVIQLAHYVVTAKLLG----FTPGELRSYLKG-----------ATGHSQGL 277
Query: 159 VTATVAPVAAGSGIPEVKAYLNGVDAPGILSFRTLVIKIIG-------SISAVSSSLLV- 210
VTA +A +++ A +L F IG +++ S+L
Sbjct: 278 VTAVA--IAETDSWES--FFVSVRKAITVLFF-------IGVRCYEAYPNTSLPPSILED 326
Query: 211 ------GKAGPMVH-TG---ACVASLLGQ-----GGSKKYGLTWKWLRFFKNDRDRRDFV 255
G PM+ + V + + K+ ++ L N ++ V
Sbjct: 327 SLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEIS---LV---N--GAKNLV 378
Query: 256 TCGSAA---GIAAAFR---APVG 272
G G+ R AP G
Sbjct: 379 VSGPPQSLYGLNLTLRKAKAPSG 401
Score = 35.8 bits (82), Expect = 0.071
Identities = 39/265 (14%), Positives = 76/265 (28%), Gaps = 98/265 (36%)
Query: 434 YNDLASLIFNTNDDAIRNLFSKDTDKEF-QHSSMLIF-------FVTCFS---LSVLSYG 482
+ +++IF T D L ++ KE +HS+ F T F+ L+++
Sbjct: 1685 RENYSAMIFETIVDG--KLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKA 1742
Query: 483 IVA---PAGLFVP-------------AIVTGASY-------------GRFVGMLV--GSH 511
GL A+ + A G + + V
Sbjct: 1743 AFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDEL 1802
Query: 512 SNLNHGLYAVLGAASFLGGSMRMTVSLCVIILELTNNLLLLPMIMLVLLISKTVADAFNG 571
N+G+ A+ S + + + T L+ + N
Sbjct: 1803 GRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLV-------------EIV---NY 1846
Query: 572 NIYDLIMKAKGFPYLETHVEPYMRQLTV--GDVVTAPLQLFHGIEKAGNVVHVLRTTRHN 629
N+ + Q V GD+ ++ NV++ ++ +
Sbjct: 1847 NV-------EN-------------QQYVAAGDLR--------ALDTVTNVLNFIKLQK-- 1876
Query: 630 GFPVIDENPLSETPILYGLILRAHL 654
ID L ++ L + HL
Sbjct: 1877 ----IDIIELQKSLSLEE--VEGHL 1895
Score = 35.4 bits (81), Expect = 0.092
Identities = 40/286 (13%), Positives = 79/286 (27%), Gaps = 117/286 (40%)
Query: 103 IGLIVGLIGFLNNLAVENIAGTKFVVTSNMMLANKFGMAFLSFSIPNLVLTLFASIVTAT 162
L+ +G++++L + G V + + +F +L N + L A ++
Sbjct: 58 AELVGKFLGYVSSLVEPSKVGQFDQVLNLCL--TEFENCYLEG---NDIHALAAKLLQEN 112
Query: 163 VAPVAAGSGIPEVKAYLNGVDAPGILSFRTLVIKIIGSISAVSSSLLV-----GKAGPMV 217
+ + +K Y+ S+S L G A +
Sbjct: 113 DTTLVKTKEL--IKNYITARIMAKR------------PFDKKSNSALFRAVGEGNAQLVA 158
Query: 218 HTGACVASLLGQGGSKKY------------------------------------------ 235
G GQG + Y
Sbjct: 159 IFG-------GQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQ 211
Query: 236 GL-TWKWLRFFKNDRDRR---DFVTCGSAAGIAAAFRAPVGGLL----FAI--------- 278
GL +WL + D++ I + P+ G++ + +
Sbjct: 212 GLNILEWLE----NPSNTPDKDYL-----LSIPISC--PLIGVIQLAHYVVTAKLLGFTP 260
Query: 279 EEMASWWR----------SALL------WRAFFTTAIVAILLRAFI 308
E+ S+ + +A+ W +FF + AI + FI
Sbjct: 261 GELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFI 306
Score = 34.3 bits (78), Expect = 0.18
Identities = 73/493 (14%), Positives = 143/493 (29%), Gaps = 162/493 (32%)
Query: 383 LACTISILTSCLLFGLPWL----ASCRPCPSD--ASEACPT-----IGRSGNYKKF---- 427
L + + T+ F L P P++ A++ PT +G+ + +
Sbjct: 16 LEHVLLVPTA-SFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGK---FLGYVSSL 71
Query: 428 --QCAPGYYNDLASLIFN--------TND--DAIRNLFSKDTDKEFQHSSMLIFFVTCFS 475
G ++ + +L ND L ++ + ++ ++T
Sbjct: 72 VEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARI 131
Query: 476 LSVLSYGIVAPAGLFVPAIVTGASYGRFVGMLVGSHSNLNHGLYAVLGAASFLG-GSMRM 534
++ + + + LF A+ G + L A+ G G G+
Sbjct: 132 MAKRPFDKKSNSALF-RAVGEGNA-----------------QLVAIFG-----GQGNTDD 168
Query: 535 TVSLCVIILELTNNLLLLPMIMLVLLISKTVADAFNGNIYDLIMKAKGFPYLETHVEPYM 594
EL + + ++ + DLI + L +
Sbjct: 169 YFE------EL-----------------RDLYQTYHVLVGDLIKFS--AETLSELIR--- 200
Query: 595 RQLTVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPI---LYGLILR 651
+ A G+ N++ L + P D++ L PI L G+I
Sbjct: 201 ------TTLDAEKVFTQGL----NILEWLENP--SNTP--DKDYLLSIPISCPLIGVIQL 246
Query: 652 AHLITLLKKKAFLPTPNPTVNDAFSQF-----------SAVDFAKRGSG-----NGDK-I 694
AH + K F P + S +AV A+ S + K I
Sbjct: 247 AHYVVTAKLLGFTPG------ELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAI 300
Query: 695 E--------------DIELSEEEMEMYVDLHPFANASPYTVVETMSLAKALILFREVGLR 740
+ L +E ++ + SP + ++ + +
Sbjct: 301 TVLFFIGVRCYEAYPNTSLPPSILEDSLE-NNEGVPSPMLSISNLTQEQVQDYVNKTN-S 358
Query: 741 HLLVIPKIS----NGSPVMGILTRHDFMPEHILALNPLLAR---------------SRWK 781
HL ++ NG +++ P+ + LN L + R
Sbjct: 359 HLPAGKQVEISLVNG-AKNLVVSGP---PQSLYGLNLTLRKAKAPSGLDQSRIPFSERKL 414
Query: 782 RLRIRFPPSLKPF 794
+ RF P PF
Sbjct: 415 KFSNRFLPVASPF 427
Score = 34.3 bits (78), Expect = 0.21
Identities = 56/357 (15%), Positives = 82/357 (22%), Gaps = 161/357 (45%)
Query: 3 TQPPTEKMATAA---------AFENLNTAGVEGGQDPESLTVPLLSHQRSRSSISNSTSQ 53
P + + + + G P L RS + +T
Sbjct: 224 NTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGEL----------RSYLKGATGH 273
Query: 54 V-ALVGADVCPIESLDYEIAENDFFKEDWRTRGRN--QMIQYIFMKWSLCFLIGL----- 105
LV A IAE D W + + + I +F + IG+
Sbjct: 274 SQGLVTAVA---------IAETD----SWESFFVSVRKAITVLF--F-----IGVRCYEA 313
Query: 106 ---------------------------IVGL--------IGFLN---------NLAVENI 121
I L + N +++ N
Sbjct: 314 YPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVN- 372
Query: 122 AGTKFVVTS--------NMMLAN-------------------KFGMAFLSFSIP------ 148
VV+ N+ L KF FL + P
Sbjct: 373 GAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLL 432
Query: 149 -NLVLTLFASIVTATVAPVAAGSGIPEVKAYLNGVDAPGILSFRTLVIKIIGSI------ 201
+ +V V+ A IP V +G D R L I I
Sbjct: 433 VPASDLINKDLVKNNVSFNAKDIQIP-VYDTFDGSD------LRVLSGSISERIVDCIIR 485
Query: 202 ------SAVSSS---LLV---GKA---GPMVH-----TGACV--ASLLGQGGSKKYG 236
+ +L G A G + H TG V A L YG
Sbjct: 486 LPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINPDDDYG 542
Score = 31.6 bits (71), Expect = 1.6
Identities = 29/187 (15%), Positives = 50/187 (26%), Gaps = 87/187 (46%)
Query: 3 TQPPTEKMATA--AAFENLNTAGVEGGQDPE------SL-----------------TVPL 37
TQP + AAFE+L + +G + SL V +
Sbjct: 1732 TQP---ALTLMEKAAFEDLKS---KGLIPADATFAGHSLGEYAALASLADVMSIESLVEV 1785
Query: 38 LSHQRSRS------SISNSTSQVALVGAD------VCPIESLDY-------------EIA 72
+ R + S ++ + E+L Y EI
Sbjct: 1786 V-FYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIV 1844
Query: 73 ENDFFKEDWRTRGRN---QMIQYIFMKWSLCFLI-GLIVGL---IGFLNNLAVENIAGTK 125
N N Q QY+ G + L LN + ++ I +
Sbjct: 1845 -NY-----------NVENQ--QYV---------AAGDLRALDTVTNVLNFIKLQKIDIIE 1881
Query: 126 FVVTSNM 132
+ ++
Sbjct: 1882 LQKSLSL 1888
Score = 31.2 bits (70), Expect = 1.8
Identities = 28/145 (19%), Positives = 42/145 (28%), Gaps = 47/145 (32%)
Query: 606 PLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLP 665
PL L HG L V P + + L ++ F
Sbjct: 8 PLTLSHG---------SLEHV----LLV----PTA----SFF-----IASQL--QEQFNK 39
Query: 666 T-PNPTVNDA--------------FSQFSAVDFAKRGSGNGDKIEDIELSEEEMEMYV-- 708
P PT A F + + G D++ ++ L+E E Y+
Sbjct: 40 ILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFE-NCYLEG 98
Query: 709 -DLHPFANASPYTVVETMSLAKALI 732
D+H A T+ K LI
Sbjct: 99 NDIHALAAKLLQENDTTLVKTKELI 123
>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein
structure initiative; 1.40A {Methanothermobacter
thermautotrophicusdelta H} SCOP: d.37.1.1
Length = 125
Score = 38.3 bits (90), Expect = 0.002
Identities = 18/172 (10%), Positives = 45/172 (26%), Gaps = 59/172 (34%)
Query: 597 LTVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLIT 656
+ V DV+ + +V+ V+ E + G++
Sbjct: 1 MRVEDVMVTDVDTIDITASLEDVLRNYVENAKGSSVVVKEG------VRVGIV------- 47
Query: 657 LLKKKAFLPTPNPTVNDAFSQFSAVDFAKRGSGNGD----KIEDIELSEEEMEMYVDLHP 712
+ D + + D K+ ++ M
Sbjct: 48 ----------------------TTWDVLEAIAEGDDLAEVKVWEV--------M------ 71
Query: 713 FANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHDFM 764
T+ ++ +A + + LLV + + G+++ D +
Sbjct: 72 --ERDLVTISPRATIKEAAEKMVKNVVWRLLV---EEDDEII-GVISATDIL 117
>3ddj_A CBS domain-containing protein; structural genomics, joint center
for structural genomics, J protein structure initiative,
PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP:
d.37.1.1 d.37.1.1
Length = 296
Score = 40.1 bits (94), Expect = 0.002
Identities = 28/226 (12%), Positives = 67/226 (29%), Gaps = 50/226 (22%)
Query: 575 DLIMKAKGFPYLETHVEPY--MRQLTVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFP 632
DL+ + + + + D +T + ++++ T P
Sbjct: 69 DLLSTVESYCKDSCSQGDLYHISTTPIIDYMTPNPVTVYNTSDEFTAINIMVTRNFGSLP 128
Query: 633 VIDENPLSETPILYGLILRAHLITLLKKKAFLPT-------------PNPTVNDAFSQF- 678
V+D N G++ + L K + ++ A
Sbjct: 129 VVDIND-----KPVGIVTEREFLLLYKDLDEIFPVKVFMSTKVQTIYKEVRLDQAVKLML 183
Query: 679 --------------------SAVDFAKRGSGNGDKIEDIELSEEEMEMYVDLHPFANASP 718
+ V+ K+ + DK++ + ++ + +
Sbjct: 184 RRGFRRLPVIDDDNKVVGIVTVVNAIKQLAKAVDKLDPDYFYGKVVKDVM------VTNL 237
Query: 719 YTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHDFM 764
T+ E S+ +A + LL++ K + + GI+T D +
Sbjct: 238 VTIDELASVNRAAAEMIVKRIGSLLILNK--DNTIR-GIITERDLL 280
Score = 36.3 bits (84), Expect = 0.028
Identities = 11/47 (23%), Positives = 18/47 (38%), Gaps = 5/47 (10%)
Query: 718 PYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHDFM 764
P + + L A E G+ ++V N G+LT D +
Sbjct: 30 PPILSKEDRLGSAFKKINEGGIGRIIVA----NEKIE-GLLTTRDLL 71
>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding;
1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB:
2nye_A
Length = 144
Score = 37.5 bits (88), Expect = 0.004
Identities = 25/146 (17%), Positives = 46/146 (31%), Gaps = 42/146 (28%)
Query: 619 VVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNPTVNDAFSQF 678
V+ +L R + P+IDEN L + ++ L+K + + +V +A
Sbjct: 33 VIQMLTQGRVSSVPIIDENG-----YLINVYEAYDVLGLIKGGIY-NDLSLSVGEA---- 82
Query: 679 SAVDFAKRGSGNGDKIEDIELSEEEMEMYVDLHPFANASPYTVVETMSLAKALILFREVG 738
+ F YT + L+ + R+
Sbjct: 83 ---------------------------LMRRSDDFEG--VYTCTKNDKLSTIMDNIRKAR 113
Query: 739 LRHLLVIPKISNGSPVMGILTRHDFM 764
+ V+ G V G+LT D +
Sbjct: 114 VHRFFVVDD--VGRLV-GVLTLSDIL 136
>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix,
structural genomics, unknown function, NPPSFA; 2.25A
{Pyrococcus horikoshii} SCOP: d.37.1.1
Length = 138
Score = 37.6 bits (88), Expect = 0.004
Identities = 12/47 (25%), Positives = 18/47 (38%), Gaps = 4/47 (8%)
Query: 718 PYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHDFM 764
T L + L E ++H+L+ G V GI T D +
Sbjct: 82 LITANVNTPLGEVLRKMAEHRIKHILI---EEEGKIV-GIFTLSDLL 124
Score = 36.0 bits (84), Expect = 0.011
Identities = 15/62 (24%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
Query: 703 EMEMYVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHD 762
M+M + + V + S+ +A L E + L+VI +G+ V G T+ D
Sbjct: 2 VMDMKAPIKVYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVIND--DGNVV-GFFTKSD 58
Query: 763 FM 764
+
Sbjct: 59 II 60
>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central
glycolytic G regulator, transcription; 1.95A {Bacillus
subtilis} PDB: 3fwr_A* 3fws_A*
Length = 159
Score = 36.5 bits (85), Expect = 0.009
Identities = 22/177 (12%), Positives = 47/177 (26%), Gaps = 57/177 (32%)
Query: 594 MRQLTVGDVVTAPLQLFHG--IEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILR 651
+++L V D + P+ + + A + + V+D + +L G++
Sbjct: 14 LKKLQVKDFQSIPVVIHENVSVYDA---ICTMFLEDVGTLFVVDRDA-----VLVGVL-- 63
Query: 652 AHLITLLKKKAFLPTPNPTVNDAFSQFSAVDFAKRGSGNGD----KIEDIELSEEEMEMY 707
S D + G + + I M
Sbjct: 64 ---------------------------SRKDLLRASIGQQELTSVPVHII------MTRM 90
Query: 708 VDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHDFM 764
++ + E + L VI G V+G +T+ +
Sbjct: 91 PNI--------TVCRREDYVMDIAKHLIEKQIDALPVIKDTDKGFEVIGRVTKTNMT 139
>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national
project on protein structural functional analyses; 2.50A
{Geobacillus kaustophilus}
Length = 157
Score = 36.3 bits (84), Expect = 0.012
Identities = 31/180 (17%), Positives = 64/180 (35%), Gaps = 53/180 (29%)
Query: 585 YLETHVEPYMRQLTVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPI 644
+++ V+P++ V +Q + ++ A + VL T ++ PV+D +
Sbjct: 8 FMQMTVKPFLIPAD--KVAH--VQPGNYLDHA---LLVLTKTGYSAIPVLDTSY-----K 55
Query: 645 LYGLILRAHLITLLKKKAFLPTPNPTVNDAFSQFSAVDFAKRGSGNGDKIEDIELSEEEM 704
L+GLI ++ DA ++F + + K+E++
Sbjct: 56 LHGLISMTMMM-----------------DAILGLERIEFERLET---MKVEEV------- 88
Query: 705 EMYVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHDFM 764
M N + + SL KA+ L + ++ GI TR + +
Sbjct: 89 -M--------NRNIPRLRLDDSLMKAVGLIVNHP-----FVCVENDDGYFAGIFTRREVL 134
>4fry_A Putative signal-transduction protein with CBS DOM; CBS
domain,ssgcid, structural genomics, niaid; HET: NAD AMP;
2.10A {Burkholderia ambifaria}
Length = 157
Score = 36.5 bits (85), Expect = 0.012
Identities = 11/47 (23%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Query: 718 PYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHDFM 764
V + S + + L E +RHL V+ +G ++G+++ D +
Sbjct: 88 VRYVEPSQSTDECMALMTEHRMRHLPVL----DGGKLIGLISIGDLV 130
Score = 30.3 bits (69), Expect = 1.3
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
Query: 712 PFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHDFM 764
P + + YTV + + A+ L E G+ LLV + GI+T D+
Sbjct: 17 PDSGRTIYTVTKNDFVYDAIKLMAEKGIGALLV---VDGDDIA-GIVTERDYA 65
>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics,
NPPSFA, national project on structural and functional
analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1
Length = 133
Score = 35.6 bits (83), Expect = 0.014
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Query: 718 PYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHDFM 764
T+ E + AL L R+ +RHL V+ G+ GI++ D
Sbjct: 77 LITIREDSPITGALALMRQFNIRHLPVVDD--KGNLK-GIISIRDIT 120
Score = 32.2 bits (74), Expect = 0.20
Identities = 10/47 (21%), Positives = 19/47 (40%), Gaps = 4/47 (8%)
Query: 718 PYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHDFM 764
+V + L + E + ++V + PV GI+T D +
Sbjct: 14 VISVTKDAKLNDIAKVMTEKNIGSVIV---VDGNKPV-GIITERDIV 56
>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2,
protein structure initiative; HET: NAD; 1.60A
{Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1
Length = 135
Score = 35.7 bits (83), Expect = 0.015
Identities = 15/83 (18%), Positives = 32/83 (38%), Gaps = 15/83 (18%)
Query: 682 DFAKRGSGNGDKIEDIELSEEEMEMYVDLHPFANASPYTVVETMSLAKALILFREVGLRH 741
DF+++ ++D ++ E V + + L E+ +RH
Sbjct: 59 DFSRKSYLLDKPVKDTQVKE-----------IMTRQVAYVDLNNTNEDCMALITEMRVRH 107
Query: 742 LLVIPKISNGSPVMGILTRHDFM 764
L V+ + V+G+L+ D +
Sbjct: 108 LPVL----DDGKVIGLLSIGDLV 126
Score = 30.7 bits (70), Expect = 0.80
Identities = 12/50 (24%), Positives = 19/50 (38%), Gaps = 4/50 (8%)
Query: 715 NASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHDFM 764
+ + S+ A+ + LLV + + V GILT DF
Sbjct: 16 GHTVVAIGPDDSVFNAMQKMAADNIGALLV---MKDEKLV-GILTERDFS 61
>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A
{Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A
Length = 133
Score = 35.6 bits (83), Expect = 0.017
Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 4/47 (8%)
Query: 718 PYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHDFM 764
Y V S+ + L + E +R + V IS V GI+T D
Sbjct: 84 IYYVDANASIQEMLNVMEEHQVRRVPV---ISEHRLV-GIVTEADIA 126
Score = 33.7 bits (78), Expect = 0.072
Identities = 13/50 (26%), Positives = 19/50 (38%), Gaps = 3/50 (6%)
Query: 715 NASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHDFM 764
NA V E +L A RE + L + + G+LT D +
Sbjct: 15 NAGVTCVGEHETLTAAAQYMREHDIGALPICGD--DDRLH-GMLTDRDIV 61
>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound
nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP
NAI; 2.70A {Agrobacterium tumefaciens str}
Length = 165
Score = 35.7 bits (83), Expect = 0.024
Identities = 13/83 (15%), Positives = 24/83 (28%), Gaps = 15/83 (18%)
Query: 682 DFAKRGSGNGDKIEDIELSEEEMEMYVDLHPFANASPYTVVETMSLAKALILFREVGLRH 741
D K +G G +S + + + + + RH
Sbjct: 78 DLVKAVAGQGAASLQQSVSV-----------AMTKNVVRCQHNSTTDQLMEIMTGGRFRH 126
Query: 742 LLVIPKISNGSPVMGILTRHDFM 764
+ V NG GI++ D +
Sbjct: 127 VPV---EENGRLA-GIISIGDVV 145
Score = 33.8 bits (78), Expect = 0.086
Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 4/67 (5%)
Query: 699 LSEEEMEMYV-DLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGI 757
L + M +V DL TV +S+ +A + ++V ++G + GI
Sbjct: 17 LYFQGMATFVKDLLDRKGRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTD--ADGVVL-GI 73
Query: 758 LTRHDFM 764
T D +
Sbjct: 74 FTERDLV 80
>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation,
nucleotide-binding, serine/threonine-protei kinase,
magnesium, CBS domain; HET: AMP; 2.10A {Rattus
norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E*
2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*
Length = 330
Score = 36.5 bits (84), Expect = 0.031
Identities = 25/207 (12%), Positives = 56/207 (27%), Gaps = 49/207 (23%)
Query: 565 VADAFNGNIYDLI-----MKAKGFPYLETHVEPYMRQL--TVGDVVTAPLQLFHGIEKAG 617
V D +GN ++ +K E +M + + A + +
Sbjct: 154 VIDPESGNTLYILTHKRILKFLKLFITEFPKPEFMSKSLEELQIGTYANIAMVRTTTPVY 213
Query: 618 NVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKKAFLPTPNPTVNDAFSQ 677
+ + R + PV+DE + + + +I L +K + + +V A
Sbjct: 214 VALGIFVQHRVSALPVVDEKG-----RVVDIYSKFDVINLAAEKTY-NNLDVSVTKALQH 267
Query: 678 FSAVDFAKRGSGNGDKIEDIELSEEEMEMYVDLHPFANASPYTVVETMSLAKALILFREV 737
+L + E
Sbjct: 268 -----------------------RSHY----------FEGVLKCYLHETLEAIINRLVEA 294
Query: 738 GLRHLLVIPKISNGSPVMGILTRHDFM 764
+ L+V+ + + GI++ D +
Sbjct: 295 EVHRLVVVDE--HDVVK-GIVSLSDIL 318
>2o16_A Acetoin utilization protein ACUB, putative; structural genomics,
unknown function, PSI-2, protein struct initiative;
1.90A {Vibrio cholerae} SCOP: d.37.1.1
Length = 160
Score = 35.0 bits (81), Expect = 0.036
Identities = 12/47 (25%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Query: 718 PYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHDFM 764
P+T++ T +L A L + +RH+ ++ N + GI+++ D +
Sbjct: 15 PHTLLRTHTLNDAKHLMEALDIRHVPIVDA--NKKLL-GIVSQRDLL 58
Score = 32.3 bits (74), Expect = 0.25
Identities = 11/47 (23%), Positives = 21/47 (44%), Gaps = 4/47 (8%)
Query: 718 PYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHDFM 764
+V L ++ I ++ + L V ++ V GI+T DF+
Sbjct: 88 VTSVAPQAGLKESAIYMQKHKIGCLPV---VAKDVLV-GIITDSDFV 130
>3lqn_A CBS domain protein; csgid, structural genomics, unknown function,
center for structural genomics of infectious diseases;
1.80A {Bacillus anthracis}
Length = 150
Score = 34.7 bits (80), Expect = 0.039
Identities = 33/180 (18%), Positives = 63/180 (35%), Gaps = 53/180 (29%)
Query: 585 YLETHVEPYMRQLTVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPI 644
+ + V+ M ++ V +Q+ +G+E A + VL + ++ PV+D
Sbjct: 12 FQQIFVKDLM--ISSEKVAH--VQIGNGLEHA---LLVLVKSGYSAIPVLDPM-----YK 59
Query: 645 LYGLILRAHLITLLKKKAFLPTPNPTVNDAFSQFSAVDFAKRGSGNGDKIEDIELSEEEM 704
L+GLI A ++ D ++F + K+E + M
Sbjct: 60 LHGLISTAMIL-----------------DGILGLERIEFERLEE---MKVEQV------M 93
Query: 705 EMYVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHDFM 764
+ S AKAL + + + + + +G GILTR +
Sbjct: 94 ----------KQDIPVLKLEDSFAKALEMTID--HPFICAVNE--DGYFE-GILTRRAIL 138
>2uv4_A 5'-AMP-activated protein kinase subunit gamma-1; transferase, CBS
domain, lipid synthesis, fatty acid biosynthesis; HET:
AMP; 1.33A {Homo sapiens} PDB: 2uv5_A* 2uv6_A* 2uv7_A*
Length = 152
Score = 34.5 bits (80), Expect = 0.046
Identities = 17/167 (10%), Positives = 39/167 (23%), Gaps = 47/167 (28%)
Query: 598 TVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITL 657
T ++ + + R + PV+DE + +
Sbjct: 27 TYANIAMVRTT-----TPVYVALGIFVQHRVSALPVVDEKG-----RVVDIY-------- 68
Query: 658 LKKKAFLPTPNPTVNDAFSQFSAVDFAKRGSGNGDKIEDIELSEEEMEMYVDLHPFANAS 717
S D + D+ +++
Sbjct: 69 ---------------------SKFDVINLAAEKTYNNLDVSVTKALQHRSHYFEG----- 102
Query: 718 PYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHDFM 764
+L + E + L+V+ + N GI++ D +
Sbjct: 103 VLKCYLHETLETIINRLVEAEVHRLVVVDE--NDVVK-GIVSLSDIL 146
>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine,
conformational change, unknown function; HET: SAM; 1.60A
{Methanocaldococcus jannaschii} PDB: 3kpd_A* 3kpc_A*
Length = 122
Score = 34.0 bits (79), Expect = 0.047
Identities = 12/47 (25%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 718 PYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHDFM 764
P T +S+ +A + + + HL ++ + +G V GI+T D
Sbjct: 11 PITAHSNISIMEAAKILIKHNINHLPIVDE--HGKLV-GIITSWDIA 54
>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS
domain, PSI, protein structure initiative; 1.50A
{Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1
g.41.13.1 PDB: 2qh1_A
Length = 184
Score = 34.3 bits (79), Expect = 0.088
Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Query: 718 PYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHDFM 764
TV ++ A+ + E L L+V NG+ V G+L+ +
Sbjct: 19 FKTVNWNTTVFDAVKIMNENHLYGLVVKDD--NGNDV-GLLSERSII 62
>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II,
CBS domain, bateman domain, AP4A, diadenosine
polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium
perfringens} PDB: 3l31_A*
Length = 245
Score = 34.1 bits (77), Expect = 0.12
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
Query: 619 VVHVLRTTRHNGFPVIDENPLSETPILYGLILRAHLITLLKKK 661
V + TR++ +PVIDEN + G I R HLI+ KKK
Sbjct: 208 VKVTMSETRYSNYPVIDEN-----NKVVGSIARFHLISTHKKK 245
Score = 32.6 bits (73), Expect = 0.40
Identities = 12/75 (16%), Positives = 29/75 (38%), Gaps = 19/75 (25%)
Query: 693 KIEDIELSEEEMEMYVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGS 752
K+ED+E+ + + +SL A + R+ L+ + V +
Sbjct: 8 KVEDLEMDK----------------IAPLAPEVSLKMAWNIMRDKNLKSIPV---ADGNN 48
Query: 753 PVMGILTRHDFMPEH 767
++G+L+ + +
Sbjct: 49 HLLGMLSTSNITATY 63
>2yzq_A Putative uncharacterized protein PH1780;
sheet/helix/sheet/sheet/helix, structural genomics,
unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus
horikoshii} SCOP: d.37.1.1 d.37.1.1
Length = 282
Score = 34.0 bits (78), Expect = 0.16
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 718 PYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHD 762
P T+ + AL LF++ +R V+ K G V GI++
Sbjct: 11 PVTITLPATRNYALELFKKYKVRSFPVVNK--EGKLV-GIISVKR 52
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 34.5 bits (79), Expect = 0.18
Identities = 26/154 (16%), Positives = 42/154 (27%), Gaps = 54/154 (35%)
Query: 153 TLFASIVTATVAPVAAGSGIPEVKAYLNGVDA-----------PGILSFRT--------- 192
TLF +V+ A SGI + V G+ + R
Sbjct: 1013 TLFV-LVSVVEA--FIASGITDPYEMYKYVHVSEVGNCSGSGMGGVSALRGMFKDRFKDE 1069
Query: 193 ------LVIKIIGSISAVSSSLLVGKAGPMVHT-GACVASL--LGQGGSKKYGLTWKWLR 243
L I ++SA + LL+ +GP+ GAC S+ + G +
Sbjct: 1070 PVQNDILQESFINTMSAWVNMLLISSSGPIKTPVGACATSVESVDIG-----------VE 1118
Query: 244 FFKNDRDRRDFVTCGSA--------AGIAAAFRA 269
+ G +A
Sbjct: 1119 TIL--SGKARICIVGGYDDFQEEGSFEFGNM-KA 1149
>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS)
domain, structural genomics, protein structure
initiative, PSI; 2.10A {Bacillus subtilis} SCOP:
d.37.1.1
Length = 159
Score = 32.8 bits (75), Expect = 0.20
Identities = 29/180 (16%), Positives = 55/180 (30%), Gaps = 53/180 (29%)
Query: 585 YLETHVEPYMRQLTVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPI 644
LE V +M + V +Q+ + +E A + VL T + PV+D +
Sbjct: 11 LLEATVGQFM--IEADKVAH--VQVGNNLEHA---LLVLTKTGYTAIPVLDPS-----YR 58
Query: 645 LYGLILRAHLITLLKKKAFLPTPNPTVNDAFSQFSAVDFAKRGSGNGDKIEDIELSEEEM 704
L+GLI ++ ++ ++F K + +E++ M
Sbjct: 59 LHGLIGTNMIM-----------------NSIFGLERIEFEKL---DQITVEEV------M 92
Query: 705 EMYVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHDFM 764
+ + K + G + V GI TR +
Sbjct: 93 ----------LTDIPRLHINDPIMKGFGMVINNGF--VCVEND--EQVFE-GIFTRRVVL 137
Score = 27.8 bits (62), Expect = 7.9
Identities = 21/133 (15%), Positives = 47/133 (35%), Gaps = 16/133 (12%)
Query: 534 MTVSLCVIILELTNNLLLLPMIMLVLLISKT-VADAFN---GNI--YDLIMKAKGFPYLE 587
M + V +++ NNL +++ + V D G I ++ G +E
Sbjct: 20 MIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIMNSIFGLERIE 79
Query: 588 THVEPYMRQLTVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYG 647
+ Q+TV +V+ + H + ++ + V ++ + G
Sbjct: 80 FEK---LDQITVEEVMLTDIPRLHINDPIMKGFGMV--INNGFVCVENDE-----QVFEG 129
Query: 648 LILRAHLITLLKK 660
+ R ++ L K
Sbjct: 130 IFTRRVVLKELNK 142
>1apj_A Fibrillin; microfibril, TB module, marfan syndrome, connective
tissue, novel fold, extracellular matrix; NMR {Homo
sapiens} SCOP: g.23.1.1
Length = 74
Score = 31.0 bits (70), Expect = 0.22
Identities = 11/28 (39%), Positives = 13/28 (46%), Gaps = 4/28 (14%)
Query: 393 CLLFGLPWLASCRPCPSDASEA----CP 416
C L G W C CP++ EA CP
Sbjct: 34 CALKGEGWGDPCELCPTEPDEAFRQICP 61
>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint
center for structural genomics, J protein structure
initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima}
SCOP: d.37.1.1
Length = 213
Score = 33.2 bits (76), Expect = 0.25
Identities = 8/45 (17%), Positives = 18/45 (40%), Gaps = 3/45 (6%)
Query: 718 PYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHD 762
V E+ ++ + L R+ +V + G G++ + D
Sbjct: 23 FPMVEESATVRECLHRMRQYQTNECIVKDR--EGHFR-GVVNKED 64
>3ctu_A CBS domain protein; structural genomics, PSI-2, protein structure
initiative, midwest center for structural genomics,
MCSG; 2.81A {Streptococcus pneumoniae TIGR4} PDB: 3k6e_A
Length = 156
Score = 32.3 bits (74), Expect = 0.31
Identities = 21/180 (11%), Positives = 42/180 (23%), Gaps = 54/180 (30%)
Query: 585 YLETHVEPYMRQLTVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPI 644
+L E ++ ++ L H + A +L + PV+ +
Sbjct: 12 FLLGQEETFLTPAK--NLAV--LIDTHNADHA---TLLLSQMTYTRVPVVTDE-----KQ 59
Query: 645 LYGLILRAHLITLLKKKAFLPTPNPTVNDAFSQFSAVDFAKRGSGNGDKIEDIELSEEEM 704
G I ++ + I +
Sbjct: 60 FVGTIGLRDIMAYQMEHDLSQEIMADT---------------------DIVHM------- 91
Query: 705 EMYVDLHPFANASPYTVVETMSLAKALILFREVGLRHLLVIPKISNGSPVMGILTRHDFM 764
D V ++ + L + L V+ G GI+TR +
Sbjct: 92 -TKTD--------VAVVSPDFTITEVLHKLVDESF--LPVVDA--EGIFQ-GIITRKSIL 137
>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for
structural genomics, secsg; 2.59A {Methanocaldococcus
jannaschii dsm 2661ORGANISM_TAXID}
Length = 138
Score = 29.5 bits (67), Expect = 1.8
Identities = 27/176 (15%), Positives = 51/176 (28%), Gaps = 54/176 (30%)
Query: 594 MRQLTVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFPVIDENPLSETPILYGLILRAH 653
++ + V DV+T + E + + + PVID+ + G++
Sbjct: 5 LKNIKVKDVMTKNVITAKRHEGVVEAFEKMLKYKISSLPVIDDE-----NKVIGIVTTTD 59
Query: 654 LITLLKKKAFLPTPNPTVNDAFSQFSAVDFAKRGSGNGDKIEDIELSEEEMEMYVDLHPF 713
+ L + + I D+ M
Sbjct: 60 IGYNLIRDKYTL-------------------------ETTIGDV------M--------- 79
Query: 714 ANASPYTVVETMSLAKALILFREVGL-----RHLLVIPKISNGSPVMGILTRHDFM 764
T+ E S+ +A+ G L V+ K N V GI++ D +
Sbjct: 80 -TKDVITIHEDASILEAIKKMDISGKKEEIINQLPVVDK--NNKLV-GIISDGDII 131
>1wuc_A Bouganin; alpha-beta protein; 1.80A {Bougainvillea spectabilis}
PDB: 3ctk_A
Length = 250
Score = 29.7 bits (66), Expect = 3.3
Identities = 13/74 (17%), Positives = 25/74 (33%), Gaps = 2/74 (2%)
Query: 399 PWLASCRPCPSDASEACPTIGRSGNYKKFQCAPGYYNDLASLIFNTNDDAIRNLFSKDTD 458
P +A+ + P + T+ G+Y+K A L + +I + K +
Sbjct: 93 PTVATSKLFPGVTNRV--TLTFDGSYQKLVNAAKVDRKDLELGVYKLEFSIEAIHGKTIN 150
Query: 459 KEFQHSSMLIFFVT 472
+ LI
Sbjct: 151 GQEIAKFFLIVIQM 164
>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A
{Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A*
2yg7_A* 3rha_A*
Length = 453
Score = 29.7 bits (67), Expect = 3.6
Identities = 10/42 (23%), Positives = 16/42 (38%), Gaps = 6/42 (14%)
Query: 258 GSAAGIAAAFRAPVGGLLFAIEEMASWWRS----ALL--WRA 293
G A R PVG + F+ ++A+ A+ R
Sbjct: 402 GGLHRYGADSRTPVGPIHFSCSDIAAEGYQHVDGAVRMGQRT 443
>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates,
flavoenzymes, nicotine degradation, oxidoreductase; HET:
FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB:
3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X*
3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*
Length = 431
Score = 29.8 bits (67), Expect = 4.4
Identities = 4/30 (13%), Positives = 11/30 (36%)
Query: 258 GSAAGIAAAFRAPVGGLLFAIEEMASWWRS 287
G + + P G + F +++ +
Sbjct: 377 GQFSRVHKELGEPAGRIHFVGSDVSLEFPG 406
>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase,
inhibitor binding, rasagiline, enantioselectivity,
oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP:
c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A*
1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A*
2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A*
2v61_A* 2vrl_A* ...
Length = 520
Score = 29.4 bits (66), Expect = 5.5
Identities = 9/34 (26%), Positives = 12/34 (35%)
Query: 254 FVTCGSAAGIAAAFRAPVGGLLFAIEEMASWWRS 287
+ G R PV + FA E A+ W
Sbjct: 401 YFPPGILTQYGRVLRQPVDRIYFAGTETATHWSG 434
>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase,
enantioselectivity, directed evolution variant; HET:
FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*
Length = 495
Score = 29.1 bits (65), Expect = 7.0
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 258 GSAAGIAAAFRAPVGGLLFAIEEMASWWRS 287
G + R GG++FA + A WRS
Sbjct: 436 GMVSECLQGLREKHGGVVFANSDWALGWRS 465
>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics,
PSI-2, protein structure initiative; HET: EPE; 1.66A
{Chlorobium tepidum tls}
Length = 128
Score = 27.4 bits (61), Expect = 8.1
Identities = 12/89 (13%), Positives = 35/89 (39%), Gaps = 14/89 (15%)
Query: 573 IYDLIMKAKGFPYLETHVEPYMRQLTVGDVVTAPLQLFHGIEKAGNVVHVLRTTRHNGFP 632
+ L+ KG+P ++ + + + V + E+ + + + + + P
Sbjct: 53 LSRLLEGRKGWPTVKEKLGEELLE----TVRSYRPG-----EQLFDNLISVAAAKCSVVP 103
Query: 633 VIDENPLSETPILYGLILRAHLITLLKKK 661
+ DE+ G++ R ++ L ++
Sbjct: 104 LADED-----GRYEGVVSRKRILGFLAER 127
>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase,
oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays}
SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A*
1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*
Length = 472
Score = 28.7 bits (64), Expect = 9.4
Identities = 8/34 (23%), Positives = 11/34 (32%)
Query: 254 FVTCGSAAGIAAAFRAPVGGLLFAIEEMASWWRS 287
G RAPVG + F E + +
Sbjct: 405 NWPVGVNRYEYDQLRAPVGRVYFTGEHTSEHYNG 438
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.139 0.419
Gapped
Lambda K H
0.267 0.0747 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 12,321,427
Number of extensions: 778683
Number of successful extensions: 2424
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2358
Number of HSP's successfully gapped: 88
Length of query: 794
Length of database: 6,701,793
Length adjustment: 101
Effective length of query: 693
Effective length of database: 3,881,772
Effective search space: 2690067996
Effective search space used: 2690067996
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 61 (27.2 bits)