Query 003802
Match_columns 794
No_of_seqs 700 out of 4946
Neff 10.4
Searched_HMMs 46136
Date Thu Mar 28 12:18:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003802.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003802hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 8.7E-71 1.9E-75 659.0 62.3 715 1-740 193-979 (1153)
2 KOG4658 Apoptotic ATPase [Sign 100.0 3.8E-62 8.3E-67 551.5 29.8 428 2-455 168-651 (889)
3 PF00931 NB-ARC: NB-ARC domain 100.0 7.3E-39 1.6E-43 329.9 15.2 265 1-269 5-284 (287)
4 PLN00113 leucine-rich repeat r 100.0 1.1E-32 2.5E-37 332.1 20.3 374 333-709 69-468 (968)
5 PLN00113 leucine-rich repeat r 100.0 1.1E-32 2.5E-37 332.1 17.5 374 332-708 139-538 (968)
6 KOG4194 Membrane glycoprotein 100.0 8.6E-31 1.9E-35 265.3 4.1 358 332-715 77-465 (873)
7 KOG4194 Membrane glycoprotein 99.9 1.6E-28 3.4E-33 249.0 4.9 362 334-728 53-426 (873)
8 KOG0444 Cytoskeletal regulator 99.9 9.4E-29 2E-33 252.2 -5.9 333 333-704 32-373 (1255)
9 KOG0444 Cytoskeletal regulator 99.9 2.3E-28 5E-33 249.3 -5.3 338 332-706 6-352 (1255)
10 KOG0472 Leucine-rich repeat pr 99.9 1.2E-26 2.6E-31 225.3 -9.6 343 353-706 110-541 (565)
11 PLN03210 Resistant to P. syrin 99.9 4.4E-21 9.5E-26 231.2 23.1 318 377-703 557-914 (1153)
12 KOG0472 Leucine-rich repeat pr 99.9 2.2E-24 4.7E-29 209.7 -8.0 230 328-562 63-297 (565)
13 KOG0618 Serine/threonine phosp 99.9 1.8E-23 3.8E-28 224.3 -3.5 374 335-728 23-486 (1081)
14 KOG0618 Serine/threonine phosp 99.8 4.6E-22 1E-26 213.5 -5.2 348 334-704 46-487 (1081)
15 PRK15387 E3 ubiquitin-protein 99.8 1.5E-18 3.2E-23 193.4 18.6 260 335-653 203-462 (788)
16 PRK15387 E3 ubiquitin-protein 99.8 1.6E-18 3.4E-23 193.1 15.2 243 401-713 223-465 (788)
17 PRK15370 E3 ubiquitin-protein 99.8 1.5E-18 3.2E-23 194.9 12.6 225 379-649 200-428 (754)
18 PRK15370 E3 ubiquitin-protein 99.7 2.4E-18 5.2E-23 193.2 10.1 221 379-647 179-399 (754)
19 KOG4237 Extracellular matrix p 99.7 1.4E-18 3.1E-23 169.4 -1.1 221 332-552 66-357 (498)
20 KOG0617 Ras suppressor protein 99.6 6.6E-18 1.4E-22 145.5 -4.6 158 393-552 26-184 (264)
21 KOG4237 Extracellular matrix p 99.6 2.4E-17 5.2E-22 161.0 -2.5 264 386-651 54-337 (498)
22 KOG0617 Ras suppressor protein 99.6 1.9E-17 4.1E-22 142.7 -2.9 159 381-541 36-196 (264)
23 cd00116 LRR_RI Leucine-rich re 99.5 1.6E-15 3.4E-20 159.4 3.3 35 613-647 250-289 (319)
24 cd00116 LRR_RI Leucine-rich re 99.5 5.7E-16 1.2E-20 162.7 -0.2 62 587-648 192-262 (319)
25 PRK04841 transcriptional regul 99.4 1.9E-11 4.2E-16 147.3 25.3 283 3-305 21-335 (903)
26 KOG4658 Apoptotic ATPase [Sign 99.4 4.2E-12 9E-17 145.6 13.3 250 401-653 524-787 (889)
27 KOG0532 Leucine-rich repeat (L 99.2 5.1E-13 1.1E-17 137.1 -2.5 191 402-647 77-271 (722)
28 PF05729 NACHT: NACHT domain 99.2 1.3E-10 2.8E-15 108.9 12.7 142 16-165 1-163 (166)
29 COG2909 MalT ATP-dependent tra 99.2 1.1E-09 2.4E-14 119.2 19.2 284 3-306 26-342 (894)
30 TIGR03015 pepcterm_ATPase puta 99.1 2.7E-09 5.8E-14 108.7 17.8 179 14-200 42-242 (269)
31 KOG3207 Beta-tubulin folding c 99.1 9.1E-12 2E-16 124.2 -1.1 57 379-435 122-184 (505)
32 PRK00411 cdc6 cell division co 99.1 2E-08 4.2E-13 108.5 23.6 271 2-284 40-358 (394)
33 COG4886 Leucine-rich repeat (L 99.1 1.4E-10 3E-15 125.3 6.9 197 427-653 97-294 (394)
34 KOG0532 Leucine-rich repeat (L 99.1 5.5E-12 1.2E-16 129.7 -4.1 169 383-556 80-249 (722)
35 KOG3207 Beta-tubulin folding c 99.1 3.7E-11 8.1E-16 119.9 1.2 65 584-648 267-338 (505)
36 KOG1909 Ran GTPase-activating 99.0 5E-11 1.1E-15 115.9 0.5 231 398-648 28-310 (382)
37 COG4886 Leucine-rich repeat (L 99.0 4.9E-10 1.1E-14 121.1 7.9 188 361-552 97-288 (394)
38 KOG1259 Nischarin, modulator o 99.0 7.4E-11 1.6E-15 111.7 1.2 60 588-650 352-413 (490)
39 PF14580 LRR_9: Leucine-rich r 99.0 2.7E-10 5.8E-15 104.4 4.4 129 515-676 16-148 (175)
40 KOG1259 Nischarin, modulator o 99.0 1.3E-10 2.8E-15 110.1 1.1 197 420-647 179-385 (490)
41 TIGR02928 orc1/cdc6 family rep 98.9 2.5E-07 5.3E-12 98.8 25.1 272 2-284 25-350 (365)
42 COG3903 Predicted ATPase [Gene 98.9 1.2E-09 2.6E-14 109.8 6.7 277 13-302 12-314 (414)
43 TIGR00635 ruvB Holliday juncti 98.9 1.3E-08 2.9E-13 105.5 14.6 243 14-284 29-289 (305)
44 PF01637 Arch_ATPase: Archaeal 98.9 5.2E-09 1.1E-13 104.3 11.2 189 2-195 9-233 (234)
45 PRK00080 ruvB Holliday junctio 98.9 7.7E-09 1.7E-13 107.8 12.3 153 125-284 151-310 (328)
46 PF14580 LRR_9: Leucine-rich r 98.9 1.2E-09 2.5E-14 100.2 3.9 105 355-459 17-126 (175)
47 COG2256 MGS1 ATPase related to 98.9 1.6E-08 3.5E-13 101.0 12.0 151 13-192 46-208 (436)
48 KOG1909 Ran GTPase-activating 98.8 3.2E-10 6.8E-15 110.4 -1.2 189 419-626 88-311 (382)
49 PRK06893 DNA replication initi 98.8 4.3E-08 9.3E-13 96.1 12.0 150 15-196 39-203 (229)
50 TIGR03420 DnaA_homol_Hda DnaA 98.7 1.3E-07 2.7E-12 93.5 12.0 161 3-197 28-202 (226)
51 KOG0531 Protein phosphatase 1, 98.7 1.9E-09 4.1E-14 116.4 -1.5 58 493-552 139-197 (414)
52 PF13173 AAA_14: AAA domain 98.7 7.3E-08 1.6E-12 85.1 8.8 120 15-157 2-127 (128)
53 KOG0531 Protein phosphatase 1, 98.7 2.2E-09 4.8E-14 115.9 -1.5 218 398-649 70-290 (414)
54 PLN03150 hypothetical protein; 98.7 2.7E-08 5.8E-13 112.4 6.9 106 447-552 419-526 (623)
55 PF13401 AAA_22: AAA domain; P 98.6 1.6E-07 3.5E-12 83.7 9.8 114 14-134 3-125 (131)
56 PLN03150 hypothetical protein; 98.6 4.1E-08 8.8E-13 111.0 7.2 105 425-529 420-526 (623)
57 KOG2120 SCF ubiquitin ligase, 98.6 6.9E-10 1.5E-14 105.3 -7.0 153 401-553 186-350 (419)
58 COG3899 Predicted ATPase [Gene 98.6 1.7E-06 3.7E-11 100.4 18.8 205 95-302 152-386 (849)
59 KOG2028 ATPase related to the 98.6 9.2E-07 2E-11 86.8 12.7 160 5-191 154-331 (554)
60 PF13855 LRR_8: Leucine rich r 98.5 7.9E-08 1.7E-12 72.1 3.9 58 400-457 1-60 (61)
61 PRK13342 recombination factor 98.5 1.1E-06 2.3E-11 94.7 13.7 163 4-198 27-198 (413)
62 PRK08727 hypothetical protein; 98.5 1.1E-06 2.3E-11 86.4 12.5 146 16-193 42-201 (233)
63 KOG2120 SCF ubiquitin ligase, 98.5 1.3E-09 2.9E-14 103.4 -7.6 178 448-646 187-373 (419)
64 TIGR00678 holB DNA polymerase 98.5 3.7E-06 8.1E-11 80.1 15.9 160 2-192 2-187 (188)
65 PF00308 Bac_DnaA: Bacterial d 98.5 2.7E-06 5.9E-11 82.5 14.4 158 15-195 34-207 (219)
66 KOG4341 F-box protein containi 98.5 3.2E-09 6.9E-14 105.8 -6.3 270 419-721 160-455 (483)
67 PF05496 RuvB_N: Holliday junc 98.5 1.8E-06 4E-11 80.8 12.2 154 13-199 48-224 (233)
68 PRK07003 DNA polymerase III su 98.5 7.1E-06 1.5E-10 90.5 18.2 98 96-195 118-220 (830)
69 PRK14961 DNA polymerase III su 98.5 6.9E-06 1.5E-10 86.6 17.6 98 96-195 118-219 (363)
70 PRK08084 DNA replication initi 98.4 3.9E-06 8.4E-11 82.6 14.1 150 15-196 45-209 (235)
71 PF13855 LRR_8: Leucine rich r 98.4 2.5E-07 5.4E-12 69.4 4.0 57 448-504 3-59 (61)
72 PRK09087 hypothetical protein; 98.4 2.2E-06 4.7E-11 83.5 11.5 139 15-196 44-195 (226)
73 PRK05642 DNA replication initi 98.4 2.8E-06 6.1E-11 83.5 12.4 149 16-196 46-208 (234)
74 PRK14949 DNA polymerase III su 98.4 1.6E-05 3.5E-10 89.6 18.9 100 95-196 117-220 (944)
75 PTZ00112 origin recognition co 98.4 9.3E-06 2E-10 90.0 16.4 159 2-166 765-950 (1164)
76 PRK12402 replication factor C 98.4 4.1E-06 8.9E-11 88.5 13.7 186 3-195 26-225 (337)
77 PRK14960 DNA polymerase III su 98.4 2.1E-05 4.6E-10 85.9 18.8 98 96-195 117-218 (702)
78 PRK05564 DNA polymerase III su 98.4 5.9E-06 1.3E-10 85.6 13.8 164 4-195 16-189 (313)
79 PRK14963 DNA polymerase III su 98.4 1.1E-05 2.5E-10 87.8 16.4 183 4-194 26-215 (504)
80 PLN03025 replication factor C 98.3 5.3E-06 1.1E-10 86.1 12.5 169 4-194 25-198 (319)
81 PRK12323 DNA polymerase III su 98.3 1.1E-05 2.4E-10 87.7 14.4 100 95-196 122-225 (700)
82 PRK14956 DNA polymerase III su 98.3 7.5E-06 1.6E-10 86.8 12.8 182 4-194 30-220 (484)
83 PRK04195 replication factor C 98.3 1.9E-05 4.2E-10 86.8 16.4 170 2-198 24-204 (482)
84 PRK15386 type III secretion pr 98.3 3.4E-06 7.4E-11 87.1 9.5 74 444-529 50-123 (426)
85 cd00009 AAA The AAA+ (ATPases 98.3 9.7E-06 2.1E-10 74.0 11.8 105 14-135 18-130 (151)
86 PRK14087 dnaA chromosomal repl 98.3 1.3E-05 2.9E-10 86.4 14.3 164 16-198 142-321 (450)
87 PRK14957 DNA polymerase III su 98.3 1.6E-05 3.4E-10 86.8 14.7 94 96-191 118-215 (546)
88 PRK08903 DnaA regulatory inact 98.2 1.4E-05 3E-10 78.8 13.1 151 14-200 41-203 (227)
89 PRK07940 DNA polymerase III su 98.2 2.1E-05 4.5E-10 82.9 14.8 94 96-196 116-213 (394)
90 PRK07471 DNA polymerase III su 98.2 0.00012 2.5E-09 76.6 19.8 95 96-196 140-238 (365)
91 PRK00440 rfc replication facto 98.2 3.6E-05 7.9E-10 80.6 16.1 170 3-195 28-202 (319)
92 KOG2982 Uncharacterized conser 98.2 3.7E-07 8.1E-12 87.1 0.9 84 398-481 69-157 (418)
93 PRK06645 DNA polymerase III su 98.2 4.2E-05 9.1E-10 83.0 16.4 97 96-194 127-227 (507)
94 KOG1859 Leucine-rich repeat pr 98.2 3.6E-08 7.7E-13 104.9 -6.9 127 472-626 166-292 (1096)
95 KOG2982 Uncharacterized conser 98.2 6.8E-07 1.5E-11 85.4 1.8 209 444-676 69-287 (418)
96 TIGR02397 dnaX_nterm DNA polym 98.2 6E-05 1.3E-09 80.2 17.0 100 96-197 116-219 (355)
97 PRK13341 recombination factor 98.2 2.9E-05 6.2E-10 88.1 15.0 150 14-193 51-214 (725)
98 PRK14958 DNA polymerase III su 98.2 4.2E-05 9E-10 83.7 15.8 98 96-195 118-219 (509)
99 KOG4341 F-box protein containi 98.1 4E-08 8.6E-13 98.2 -7.2 271 399-698 163-457 (483)
100 PRK08691 DNA polymerase III su 98.1 4.5E-05 9.8E-10 84.2 15.3 99 96-196 118-220 (709)
101 PRK14964 DNA polymerase III su 98.1 0.00011 2.4E-09 79.0 17.9 97 96-194 115-215 (491)
102 PRK07994 DNA polymerase III su 98.1 2.5E-05 5.4E-10 86.6 12.9 100 95-196 117-220 (647)
103 COG5238 RNA1 Ran GTPase-activa 98.1 8.5E-07 1.8E-11 83.6 1.2 196 490-707 88-317 (388)
104 PRK14088 dnaA chromosomal repl 98.1 2.5E-05 5.4E-10 84.3 12.4 159 15-195 130-304 (440)
105 PRK12422 chromosomal replicati 98.1 4.5E-05 9.8E-10 82.0 14.3 152 16-190 142-307 (445)
106 TIGR00362 DnaA chromosomal rep 98.1 3.4E-05 7.3E-10 83.2 13.1 157 15-194 136-308 (405)
107 PRK14962 DNA polymerase III su 98.1 0.00019 4E-09 77.7 18.6 101 96-198 116-221 (472)
108 PRK09112 DNA polymerase III su 98.1 3.2E-05 6.9E-10 80.3 12.3 170 15-196 45-240 (351)
109 PRK14951 DNA polymerase III su 98.1 0.00013 2.9E-09 80.8 17.5 98 96-195 123-224 (618)
110 PRK05896 DNA polymerase III su 98.1 8E-05 1.7E-09 81.4 15.4 96 97-194 119-218 (605)
111 cd01128 rho_factor Transcripti 98.1 5.1E-06 1.1E-10 81.5 5.7 93 15-109 16-115 (249)
112 KOG1859 Leucine-rich repeat pr 98.1 1.1E-07 2.4E-12 101.2 -6.4 110 584-707 183-293 (1096)
113 PRK00149 dnaA chromosomal repl 98.1 4E-05 8.7E-10 83.7 13.0 158 15-195 148-321 (450)
114 PRK06620 hypothetical protein; 98.0 5.8E-05 1.3E-09 72.8 12.4 133 16-193 45-186 (214)
115 PRK05707 DNA polymerase III su 98.0 0.00011 2.4E-09 75.6 15.2 95 96-196 105-203 (328)
116 PRK14955 DNA polymerase III su 98.0 3E-05 6.5E-10 82.9 11.3 98 96-195 126-227 (397)
117 COG1474 CDC6 Cdc6-related prot 98.0 0.00017 3.8E-09 75.2 16.5 141 17-165 44-203 (366)
118 TIGR01242 26Sp45 26S proteasom 98.0 7.4E-05 1.6E-09 79.2 14.0 149 15-190 156-328 (364)
119 PRK14970 DNA polymerase III su 98.0 9E-05 1.9E-09 78.9 13.7 167 4-194 29-207 (367)
120 TIGR02881 spore_V_K stage V sp 98.0 5.4E-05 1.2E-09 76.1 11.3 133 13-166 40-192 (261)
121 PRK14969 DNA polymerase III su 98.0 9.5E-05 2.1E-09 81.5 14.1 97 96-194 118-218 (527)
122 PRK09376 rho transcription ter 98.0 1.5E-05 3.2E-10 81.6 7.1 93 16-110 170-269 (416)
123 PF05621 TniB: Bacterial TniB 98.0 0.00015 3.3E-09 71.6 13.7 188 2-194 47-259 (302)
124 PRK14954 DNA polymerase III su 98.0 0.00024 5.3E-09 79.0 16.9 95 96-192 126-224 (620)
125 PRK07133 DNA polymerase III su 98.0 0.00012 2.7E-09 81.7 14.5 98 96-195 117-218 (725)
126 PRK14953 DNA polymerase III su 97.9 0.00027 5.9E-09 76.9 16.6 100 96-197 118-221 (486)
127 PRK14952 DNA polymerase III su 97.9 0.00038 8.3E-09 76.9 17.7 95 96-192 117-215 (584)
128 PRK07764 DNA polymerase III su 97.9 0.00026 5.7E-09 81.5 17.0 98 95-194 118-219 (824)
129 PRK08451 DNA polymerase III su 97.9 0.00084 1.8E-08 73.1 19.8 99 96-196 116-218 (535)
130 PRK14959 DNA polymerase III su 97.9 0.0003 6.5E-09 77.5 16.4 102 96-199 118-224 (624)
131 PRK09111 DNA polymerase III su 97.9 0.0002 4.3E-09 79.6 14.8 99 96-196 131-233 (598)
132 COG1373 Predicted ATPase (AAA+ 97.9 0.00014 2.9E-09 77.4 13.0 119 17-161 39-163 (398)
133 PRK15386 type III secretion pr 97.9 4E-05 8.7E-10 79.3 8.5 52 378-433 52-104 (426)
134 PF14516 AAA_35: AAA-like doma 97.9 0.0016 3.5E-08 67.7 20.5 181 16-202 32-245 (331)
135 PF13191 AAA_16: AAA ATPase do 97.9 5E-05 1.1E-09 72.3 8.6 41 2-42 10-51 (185)
136 PRK14086 dnaA chromosomal repl 97.9 0.00019 4.2E-09 78.6 13.9 156 16-194 315-486 (617)
137 PRK14950 DNA polymerase III su 97.9 0.00025 5.4E-09 79.7 14.9 171 15-196 38-221 (585)
138 COG5238 RNA1 Ran GTPase-activa 97.8 2.5E-06 5.3E-11 80.6 -0.9 42 417-458 86-132 (388)
139 COG0593 DnaA ATPase involved i 97.8 0.00024 5.2E-09 73.8 13.3 131 15-165 113-257 (408)
140 PRK06305 DNA polymerase III su 97.8 0.00028 6E-09 76.4 14.2 96 96-193 120-219 (451)
141 PF00004 AAA: ATPase family as 97.8 0.00015 3.3E-09 64.5 10.2 23 18-40 1-23 (132)
142 PF12799 LRR_4: Leucine Rich r 97.8 2.2E-05 4.8E-10 53.6 3.4 35 613-647 1-35 (44)
143 PRK14971 DNA polymerase III su 97.8 0.00044 9.5E-09 77.5 15.4 97 96-194 120-220 (614)
144 TIGR00767 rho transcription te 97.8 3.9E-05 8.5E-10 79.0 6.5 93 16-110 169-268 (415)
145 COG3267 ExeA Type II secretory 97.8 0.0017 3.7E-08 61.8 16.5 182 13-199 49-248 (269)
146 PRK08769 DNA polymerase III su 97.8 0.0011 2.5E-08 67.5 16.7 93 96-196 112-208 (319)
147 PRK08116 hypothetical protein; 97.8 0.00011 2.3E-09 73.7 9.1 102 16-135 115-221 (268)
148 PRK06647 DNA polymerase III su 97.8 0.0016 3.4E-08 72.3 18.9 99 96-196 118-220 (563)
149 TIGR02880 cbbX_cfxQ probable R 97.8 0.00043 9.4E-09 70.1 13.5 128 17-165 60-208 (284)
150 PRK14948 DNA polymerase III su 97.7 0.0007 1.5E-08 75.9 16.2 181 4-196 28-222 (620)
151 PF12799 LRR_4: Leucine Rich r 97.7 2E-05 4.4E-10 53.7 2.6 37 400-436 1-37 (44)
152 CHL00181 cbbX CbbX; Provisiona 97.7 0.0008 1.7E-08 68.1 14.6 130 16-166 60-210 (287)
153 PF10443 RNA12: RNA12 protein; 97.7 0.0035 7.7E-08 65.0 19.2 102 97-202 148-284 (431)
154 PRK03992 proteasome-activating 97.7 0.00058 1.3E-08 72.7 14.0 149 14-189 164-336 (389)
155 PRK06090 DNA polymerase III su 97.7 0.0023 4.9E-08 65.3 17.4 91 96-196 107-201 (319)
156 TIGR02903 spore_lon_C ATP-depe 97.7 0.00033 7.1E-09 78.9 12.5 79 87-165 282-366 (615)
157 PHA02544 44 clamp loader, smal 97.7 0.0019 4.2E-08 67.3 17.5 135 3-163 32-171 (316)
158 PRK06871 DNA polymerase III su 97.7 0.0013 2.8E-08 67.2 15.6 91 96-193 106-200 (325)
159 smart00382 AAA ATPases associa 97.7 0.00014 3.1E-09 65.7 7.7 35 16-50 3-37 (148)
160 KOG0741 AAA+-type ATPase [Post 97.7 0.0005 1.1E-08 71.5 12.1 131 12-164 535-685 (744)
161 PRK07399 DNA polymerase III su 97.6 0.0021 4.5E-08 66.0 15.6 171 15-195 26-220 (314)
162 KOG0989 Replication factor C, 97.6 0.00043 9.4E-09 67.3 9.9 161 13-193 55-227 (346)
163 KOG3665 ZYG-1-like serine/thre 97.6 2.3E-05 5E-10 88.4 1.4 132 586-725 146-282 (699)
164 PRK07952 DNA replication prote 97.6 0.00023 5.1E-09 69.6 8.2 36 15-50 99-134 (244)
165 PRK07993 DNA polymerase III su 97.6 0.0017 3.6E-08 67.2 14.8 92 96-194 107-202 (334)
166 TIGR03689 pup_AAA proteasome A 97.6 0.00041 8.9E-09 75.0 10.5 136 15-165 216-378 (512)
167 CHL00176 ftsH cell division pr 97.6 0.0016 3.6E-08 73.1 15.6 148 15-188 216-386 (638)
168 PRK05563 DNA polymerase III su 97.6 0.0029 6.2E-08 70.5 17.4 97 96-194 118-218 (559)
169 PRK08181 transposase; Validate 97.5 0.00025 5.5E-09 70.5 8.0 35 16-50 107-141 (269)
170 PRK06835 DNA replication prote 97.5 0.0002 4.4E-09 73.4 7.1 35 16-50 184-218 (329)
171 PRK06964 DNA polymerase III su 97.5 0.015 3.3E-07 60.0 20.5 91 96-196 131-225 (342)
172 PRK09361 radB DNA repair and r 97.5 0.00036 7.9E-09 68.6 8.5 50 2-51 10-59 (225)
173 PTZ00202 tuzin; Provisional 97.5 0.011 2.4E-07 61.4 19.0 150 2-165 272-434 (550)
174 PRK12377 putative replication 97.5 0.00036 7.9E-09 68.5 8.0 36 15-50 101-136 (248)
175 PTZ00454 26S protease regulato 97.5 0.0019 4.2E-08 68.4 14.0 129 14-165 178-329 (398)
176 PRK09183 transposase/IS protei 97.5 0.00045 9.7E-09 68.9 8.6 35 16-50 103-137 (259)
177 PF07693 KAP_NTPase: KAP famil 97.5 0.0049 1.1E-07 64.6 17.0 41 2-42 6-47 (325)
178 PRK14965 DNA polymerase III su 97.5 0.0019 4.1E-08 72.3 14.4 94 96-191 118-215 (576)
179 KOG1644 U2-associated snRNP A' 97.4 0.00023 5E-09 64.8 5.6 103 448-552 44-151 (233)
180 PRK08058 DNA polymerase III su 97.4 0.0023 5E-08 66.5 13.9 69 96-164 109-181 (329)
181 COG0466 Lon ATP-dependent Lon 97.4 0.00044 9.6E-09 75.1 8.3 136 15-165 350-508 (782)
182 KOG1644 U2-associated snRNP A' 97.4 0.00021 4.6E-09 65.0 5.0 101 401-503 43-149 (233)
183 PF04665 Pox_A32: Poxvirus A32 97.4 0.00055 1.2E-08 66.1 8.1 34 17-50 15-48 (241)
184 KOG3665 ZYG-1-like serine/thre 97.4 7.8E-05 1.7E-09 84.3 2.7 155 469-646 121-285 (699)
185 KOG2543 Origin recognition com 97.4 0.0024 5.1E-08 64.3 12.5 153 3-165 17-193 (438)
186 PRK06921 hypothetical protein; 97.4 0.00035 7.6E-09 69.8 6.8 36 15-50 117-153 (266)
187 TIGR02237 recomb_radB DNA repa 97.4 0.00041 8.8E-09 67.4 7.2 46 6-51 3-48 (209)
188 PF05673 DUF815: Protein of un 97.4 0.0014 3E-08 62.8 10.0 28 15-42 52-79 (249)
189 PRK06526 transposase; Provisio 97.3 0.00041 9E-09 68.6 6.8 26 16-41 99-124 (254)
190 CHL00195 ycf46 Ycf46; Provisio 97.3 0.0014 3.1E-08 71.0 11.4 153 14-190 258-429 (489)
191 cd01394 radB RadB. The archaea 97.3 0.00065 1.4E-08 66.4 8.2 49 2-50 6-54 (218)
192 TIGR03345 VI_ClpV1 type VI sec 97.3 0.0039 8.5E-08 73.0 15.4 152 16-188 209-388 (852)
193 TIGR00602 rad24 checkpoint pro 97.3 0.0014 3.1E-08 73.0 10.9 38 2-39 94-134 (637)
194 TIGR01241 FtsH_fam ATP-depende 97.3 0.0045 9.7E-08 68.6 14.9 156 15-196 88-267 (495)
195 KOG4579 Leucine-rich repeat (L 97.3 1.7E-05 3.8E-10 67.0 -3.2 62 471-534 78-139 (177)
196 TIGR02639 ClpA ATP-dependent C 97.2 0.0036 7.7E-08 72.7 13.8 129 16-165 204-358 (731)
197 KOG4579 Leucine-rich repeat (L 97.2 1.9E-05 4.2E-10 66.8 -3.4 74 384-457 59-134 (177)
198 TIGR02640 gas_vesic_GvpN gas v 97.2 0.0041 8.9E-08 62.4 12.4 25 16-40 22-46 (262)
199 COG1484 DnaC DNA replication p 97.2 0.00092 2E-08 66.3 7.3 37 14-50 104-140 (254)
200 PTZ00361 26 proteosome regulat 97.2 0.0021 4.5E-08 68.6 10.3 128 15-165 217-367 (438)
201 cd01393 recA_like RecA is a b 97.2 0.003 6.6E-08 62.2 10.7 50 2-51 6-61 (226)
202 PF01695 IstB_IS21: IstB-like 97.1 0.00042 9E-09 64.7 4.1 36 15-50 47-82 (178)
203 KOG0991 Replication factor C, 97.1 0.006 1.3E-07 56.9 11.4 29 12-40 45-73 (333)
204 KOG0744 AAA+-type ATPase [Post 97.1 0.0034 7.3E-08 61.6 10.1 80 15-109 177-262 (423)
205 PF00448 SRP54: SRP54-type pro 97.1 0.0012 2.5E-08 62.7 6.9 36 15-50 1-36 (196)
206 cd01123 Rad51_DMC1_radA Rad51_ 97.1 0.002 4.4E-08 63.9 8.9 50 2-51 6-61 (235)
207 PRK10536 hypothetical protein; 97.1 0.0022 4.7E-08 62.3 8.5 117 16-136 75-214 (262)
208 COG1066 Sms Predicted ATP-depe 97.1 0.0029 6.3E-08 64.5 9.6 98 3-108 81-179 (456)
209 PRK12608 transcription termina 97.1 0.0027 5.8E-08 65.3 9.5 102 4-109 123-232 (380)
210 PF13177 DNA_pol3_delta2: DNA 97.1 0.0053 1.1E-07 56.4 10.7 120 15-153 19-162 (162)
211 PRK08118 topology modulation p 97.1 0.00047 1E-08 63.8 3.5 33 16-48 2-37 (167)
212 cd01121 Sms Sms (bacterial rad 97.0 0.0033 7.3E-08 65.9 10.0 49 2-50 69-117 (372)
213 cd01120 RecA-like_NTPases RecA 97.0 0.003 6.6E-08 58.5 8.9 34 17-50 1-34 (165)
214 CHL00095 clpC Clp protease ATP 97.0 0.0074 1.6E-07 71.1 13.9 140 3-164 190-353 (821)
215 PRK08939 primosomal protein Dn 97.0 0.002 4.4E-08 65.7 8.0 99 15-134 156-260 (306)
216 COG1222 RPT1 ATP-dependent 26S 97.0 0.0077 1.7E-07 60.3 11.5 149 14-190 184-357 (406)
217 PRK11331 5-methylcytosine-spec 97.0 0.0013 2.9E-08 69.1 6.5 35 16-50 195-231 (459)
218 COG2607 Predicted ATPase (AAA+ 97.0 0.0047 1E-07 58.1 9.1 93 15-135 85-183 (287)
219 PRK04296 thymidine kinase; Pro 97.0 0.0014 3.1E-08 62.1 6.1 111 16-135 3-116 (190)
220 PF13207 AAA_17: AAA domain; P 97.0 0.00073 1.6E-08 59.0 3.7 23 17-39 1-23 (121)
221 PHA00729 NTP-binding motif con 96.9 0.0025 5.3E-08 60.9 7.4 27 14-40 16-42 (226)
222 PRK05541 adenylylsulfate kinas 96.9 0.0047 1E-07 58.0 9.3 36 15-50 7-42 (176)
223 TIGR03877 thermo_KaiC_1 KaiC d 96.9 0.0077 1.7E-07 59.6 11.1 49 2-50 8-56 (237)
224 COG4088 Predicted nucleotide k 96.9 0.0063 1.4E-07 55.8 9.2 30 16-45 2-31 (261)
225 PRK06067 flagellar accessory p 96.9 0.0064 1.4E-07 60.1 10.4 49 2-50 12-60 (234)
226 PRK04132 replication factor C 96.9 0.012 2.6E-07 67.7 13.6 154 21-196 570-731 (846)
227 PRK07667 uridine kinase; Provi 96.9 0.0019 4.2E-08 61.5 6.3 41 2-42 4-44 (193)
228 COG1618 Predicted nucleotide k 96.9 0.0012 2.5E-08 58.0 4.2 34 15-48 5-39 (179)
229 KOG2739 Leucine-rich acidic nu 96.9 0.00057 1.2E-08 65.2 2.4 107 444-552 41-154 (260)
230 COG2812 DnaX DNA polymerase II 96.9 0.017 3.7E-07 62.4 13.7 95 96-192 118-216 (515)
231 KOG1947 Leucine rich repeat pr 96.9 0.00012 2.6E-09 81.8 -2.6 35 445-479 187-223 (482)
232 KOG0733 Nuclear AAA ATPase (VC 96.9 0.011 2.3E-07 63.3 11.6 129 15-166 545-693 (802)
233 KOG2739 Leucine-rich acidic nu 96.8 0.0005 1.1E-08 65.6 1.8 32 379-410 44-75 (260)
234 KOG2004 Mitochondrial ATP-depe 96.8 0.0032 7E-08 68.4 8.0 140 11-165 434-596 (906)
235 PRK11889 flhF flagellar biosyn 96.8 0.011 2.5E-07 61.0 11.5 37 14-50 240-276 (436)
236 cd01131 PilT Pilus retraction 96.8 0.0052 1.1E-07 58.8 8.8 110 16-137 2-111 (198)
237 KOG1947 Leucine rich repeat pr 96.8 7.8E-05 1.7E-09 83.3 -4.6 127 422-548 187-328 (482)
238 PRK10865 protein disaggregatio 96.8 0.011 2.3E-07 69.7 12.7 26 16-41 200-225 (857)
239 KOG2228 Origin recognition com 96.8 0.022 4.7E-07 56.6 12.4 149 15-165 49-219 (408)
240 KOG2227 Pre-initiation complex 96.8 0.034 7.4E-07 57.8 14.3 159 3-166 161-339 (529)
241 TIGR03346 chaperone_ClpB ATP-d 96.8 0.013 2.8E-07 69.3 13.2 128 16-164 195-348 (852)
242 TIGR01243 CDC48 AAA family ATP 96.8 0.013 2.8E-07 68.4 13.0 150 15-190 212-381 (733)
243 PRK04328 hypothetical protein; 96.8 0.011 2.5E-07 58.7 10.7 49 2-50 10-58 (249)
244 PRK06762 hypothetical protein; 96.7 0.0067 1.5E-07 56.3 8.6 25 15-39 2-26 (166)
245 PF03215 Rad17: Rad17 cell cyc 96.7 0.0079 1.7E-07 65.8 10.2 48 1-50 28-78 (519)
246 KOG0735 AAA+-type ATPase [Post 96.7 0.016 3.5E-07 63.1 11.9 156 15-194 431-614 (952)
247 cd00561 CobA_CobO_BtuR ATP:cor 96.7 0.0057 1.2E-07 55.2 7.4 27 16-42 3-29 (159)
248 COG2255 RuvB Holliday junction 96.7 0.0088 1.9E-07 57.9 8.9 148 14-194 51-221 (332)
249 PRK07261 topology modulation p 96.7 0.0067 1.4E-07 56.4 8.1 23 17-39 2-24 (171)
250 PF07728 AAA_5: AAA domain (dy 96.7 0.0018 3.9E-08 58.1 4.2 22 18-39 2-23 (139)
251 PRK00771 signal recognition pa 96.7 0.013 2.9E-07 62.6 11.2 36 14-49 94-129 (437)
252 COG0470 HolB ATPase involved i 96.7 0.013 2.9E-07 61.3 11.4 128 5-153 14-169 (325)
253 PLN00020 ribulose bisphosphate 96.7 0.004 8.7E-08 63.3 6.8 30 13-42 146-175 (413)
254 cd00544 CobU Adenosylcobinamid 96.7 0.0053 1.1E-07 56.6 7.1 80 17-106 1-82 (169)
255 TIGR03881 KaiC_arch_4 KaiC dom 96.7 0.0099 2.1E-07 58.6 9.6 49 2-50 7-55 (229)
256 PRK05800 cobU adenosylcobinami 96.7 0.022 4.7E-07 52.7 11.1 80 17-106 3-85 (170)
257 TIGR02639 ClpA ATP-dependent C 96.6 0.042 9.1E-07 64.0 16.0 25 15-39 484-508 (731)
258 TIGR01243 CDC48 AAA family ATP 96.6 0.014 3E-07 68.1 12.1 149 15-190 487-657 (733)
259 COG0572 Udk Uridine kinase [Nu 96.6 0.0044 9.6E-08 58.4 6.4 30 13-42 6-35 (218)
260 TIGR02012 tigrfam_recA protein 96.6 0.0062 1.4E-07 62.0 8.0 49 3-51 42-91 (321)
261 PRK14974 cell division protein 96.6 0.018 3.9E-07 59.3 11.4 29 14-42 139-167 (336)
262 cd00983 recA RecA is a bacter 96.6 0.0062 1.3E-07 62.0 7.9 49 3-51 42-91 (325)
263 PRK06696 uridine kinase; Valid 96.6 0.0032 6.8E-08 61.7 5.7 41 2-42 8-49 (223)
264 KOG0733 Nuclear AAA ATPase (VC 96.6 0.011 2.4E-07 63.1 9.8 128 15-165 223-374 (802)
265 PF10236 DAP3: Mitochondrial r 96.6 0.056 1.2E-06 55.5 14.9 48 146-193 258-306 (309)
266 PRK11823 DNA repair protein Ra 96.6 0.01 2.3E-07 64.2 10.1 49 2-50 67-115 (446)
267 PRK09354 recA recombinase A; P 96.6 0.0072 1.6E-07 62.1 8.1 96 3-107 47-148 (349)
268 KOG1970 Checkpoint RAD17-RFC c 96.6 0.039 8.5E-07 58.5 13.4 47 1-49 91-142 (634)
269 PRK04301 radA DNA repair and r 96.6 0.0098 2.1E-07 61.7 9.2 48 3-50 90-143 (317)
270 PRK11034 clpA ATP-dependent Cl 96.6 0.022 4.7E-07 65.5 12.6 141 3-165 197-362 (758)
271 PRK10867 signal recognition pa 96.5 0.023 5.1E-07 60.6 11.9 29 14-42 99-127 (433)
272 TIGR00416 sms DNA repair prote 96.5 0.011 2.4E-07 64.0 9.7 49 2-50 81-129 (454)
273 cd01133 F1-ATPase_beta F1 ATP 96.5 0.0071 1.5E-07 59.8 7.4 92 16-109 70-175 (274)
274 KOG0730 AAA+-type ATPase [Post 96.5 0.025 5.4E-07 61.4 11.8 33 11-43 464-496 (693)
275 PRK10865 protein disaggregatio 96.5 0.032 6.9E-07 65.8 14.0 35 16-50 599-633 (857)
276 TIGR00064 ftsY signal recognit 96.5 0.017 3.7E-07 58.0 10.1 38 13-50 70-107 (272)
277 PF13604 AAA_30: AAA domain; P 96.5 0.0024 5.1E-08 60.9 3.8 102 16-135 19-131 (196)
278 PRK08699 DNA polymerase III su 96.5 0.041 8.9E-07 56.8 13.1 69 96-164 112-184 (325)
279 PRK12723 flagellar biosynthesi 96.5 0.026 5.7E-07 59.3 11.6 27 14-40 173-199 (388)
280 PF02562 PhoH: PhoH-like prote 96.5 0.0043 9.3E-08 58.6 5.2 117 15-135 19-156 (205)
281 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.5 0.012 2.6E-07 53.0 7.9 103 16-140 27-132 (144)
282 TIGR00763 lon ATP-dependent pr 96.5 0.027 5.8E-07 66.0 12.9 30 14-43 346-375 (775)
283 PRK10787 DNA-binding ATP-depen 96.5 0.0079 1.7E-07 69.6 8.3 137 14-165 348-506 (784)
284 COG0542 clpA ATP-binding subun 96.4 0.011 2.4E-07 66.6 8.9 97 14-121 520-619 (786)
285 COG2884 FtsE Predicted ATPase 96.4 0.014 3.1E-07 53.0 7.9 56 87-142 145-204 (223)
286 KOG2035 Replication factor C, 96.4 0.057 1.2E-06 52.1 12.3 189 13-216 32-259 (351)
287 PRK08233 hypothetical protein; 96.4 0.0074 1.6E-07 57.1 6.7 26 15-40 3-28 (182)
288 PRK12724 flagellar biosynthesi 96.4 0.028 6E-07 59.0 11.1 25 15-39 223-247 (432)
289 KOG2123 Uncharacterized conser 96.4 0.00014 3E-09 69.4 -5.1 96 380-476 21-123 (388)
290 PF13671 AAA_33: AAA domain; P 96.4 0.014 3.1E-07 52.6 8.2 24 17-40 1-24 (143)
291 PF07724 AAA_2: AAA domain (Cd 96.4 0.005 1.1E-07 57.0 5.2 36 15-50 3-39 (171)
292 COG1223 Predicted ATPase (AAA+ 96.4 0.032 6.9E-07 53.2 10.3 128 14-165 150-297 (368)
293 TIGR01359 UMP_CMP_kin_fam UMP- 96.4 0.035 7.6E-07 52.5 11.1 23 17-39 1-23 (183)
294 TIGR03345 VI_ClpV1 type VI sec 96.4 0.014 3E-07 68.5 9.9 28 15-42 596-623 (852)
295 COG0468 RecA RecA/RadA recombi 96.4 0.013 2.7E-07 58.3 8.1 97 5-106 50-150 (279)
296 PF00485 PRK: Phosphoribulokin 96.4 0.021 4.6E-07 54.5 9.5 26 17-42 1-26 (194)
297 KOG1514 Origin recognition com 96.4 0.053 1.2E-06 59.3 13.2 141 13-165 420-589 (767)
298 TIGR03499 FlhF flagellar biosy 96.4 0.017 3.6E-07 58.6 9.2 28 14-41 193-220 (282)
299 PF03969 AFG1_ATPase: AFG1-lik 96.4 0.0089 1.9E-07 62.4 7.3 102 14-135 61-167 (362)
300 cd03228 ABCC_MRP_Like The MRP 96.3 0.025 5.4E-07 52.7 9.6 35 15-50 28-62 (171)
301 PF14532 Sigma54_activ_2: Sigm 96.3 0.0025 5.4E-08 57.0 2.6 38 2-39 8-45 (138)
302 cd02027 APSK Adenosine 5'-phos 96.3 0.042 9.1E-07 49.8 10.7 24 17-40 1-24 (149)
303 TIGR01069 mutS2 MutS2 family p 96.3 0.0061 1.3E-07 70.4 6.1 112 96-216 401-521 (771)
304 PF01583 APS_kinase: Adenylyls 96.3 0.0077 1.7E-07 54.1 5.4 36 15-50 2-37 (156)
305 PRK10733 hflB ATP-dependent me 96.2 0.034 7.4E-07 63.4 11.9 127 16-165 186-335 (644)
306 COG5635 Predicted NTPase (NACH 96.2 0.04 8.8E-07 65.0 12.8 193 16-216 223-448 (824)
307 TIGR00959 ffh signal recogniti 96.2 0.042 9.2E-07 58.6 11.7 26 15-40 99-124 (428)
308 KOG1969 DNA replication checkp 96.2 0.013 2.9E-07 64.0 7.8 76 12-110 323-400 (877)
309 TIGR02858 spore_III_AA stage I 96.2 0.024 5.2E-07 56.6 9.2 118 14-137 110-231 (270)
310 PF08423 Rad51: Rad51; InterP 96.2 0.0098 2.1E-07 59.2 6.5 49 3-51 26-80 (256)
311 PF13306 LRR_5: Leucine rich r 96.2 0.015 3.2E-07 51.3 7.0 104 419-527 8-112 (129)
312 PRK08533 flagellar accessory p 96.2 0.037 8.1E-07 54.2 10.3 47 3-50 12-59 (230)
313 TIGR02236 recomb_radA DNA repa 96.2 0.025 5.5E-07 58.6 9.7 49 3-51 83-137 (310)
314 PRK14722 flhF flagellar biosyn 96.2 0.046 1E-06 57.0 11.3 36 15-50 137-174 (374)
315 TIGR03346 chaperone_ClpB ATP-d 96.2 0.019 4.2E-07 67.9 9.6 36 15-50 595-630 (852)
316 KOG2123 Uncharacterized conser 96.2 0.00044 9.5E-09 66.1 -3.2 81 587-678 18-98 (388)
317 PF07726 AAA_3: ATPase family 96.1 0.0037 8E-08 53.4 2.6 29 18-46 2-30 (131)
318 PF08433 KTI12: Chromatin asso 96.1 0.016 3.5E-07 57.9 7.5 35 16-50 2-36 (270)
319 TIGR03574 selen_PSTK L-seryl-t 96.1 0.024 5.1E-07 56.7 8.8 26 17-42 1-26 (249)
320 PF13238 AAA_18: AAA domain; P 96.1 0.0048 1E-07 54.4 3.5 22 18-39 1-22 (129)
321 cd03115 SRP The signal recogni 96.1 0.05 1.1E-06 50.9 10.4 34 17-50 2-35 (173)
322 TIGR02238 recomb_DMC1 meiotic 96.1 0.021 4.5E-07 58.6 8.3 49 2-50 83-137 (313)
323 TIGR03880 KaiC_arch_3 KaiC dom 96.1 0.044 9.5E-07 53.8 10.4 49 2-50 3-51 (224)
324 COG1419 FlhF Flagellar GTP-bin 96.1 0.035 7.7E-07 57.3 9.8 36 15-50 203-240 (407)
325 PRK05703 flhF flagellar biosyn 96.1 0.061 1.3E-06 57.8 12.1 36 15-50 221-258 (424)
326 PF13306 LRR_5: Leucine rich r 96.1 0.014 3E-07 51.5 6.2 97 419-520 31-128 (129)
327 PF06745 KaiC: KaiC; InterPro 96.1 0.0095 2.1E-07 58.6 5.5 49 2-50 6-55 (226)
328 cd01130 VirB11-like_ATPase Typ 96.0 0.0041 9E-08 58.9 2.6 108 4-118 14-121 (186)
329 PF00910 RNA_helicase: RNA hel 96.0 0.0044 9.6E-08 52.4 2.6 26 18-43 1-26 (107)
330 PRK00409 recombination and DNA 96.0 0.034 7.4E-07 64.6 10.4 111 96-216 406-526 (782)
331 PRK12726 flagellar biosynthesi 96.0 0.074 1.6E-06 55.0 11.4 37 14-50 205-241 (407)
332 PLN03187 meiotic recombination 96.0 0.025 5.5E-07 58.4 8.3 48 3-50 114-167 (344)
333 TIGR02655 circ_KaiC circadian 96.0 0.025 5.5E-07 62.3 8.8 49 2-50 250-298 (484)
334 KOG0734 AAA+-type ATPase conta 96.0 0.02 4.3E-07 60.3 7.3 39 1-39 316-361 (752)
335 PTZ00301 uridine kinase; Provi 96.0 0.0067 1.5E-07 58.1 3.8 29 15-43 3-31 (210)
336 cd03247 ABCC_cytochrome_bd The 95.9 0.056 1.2E-06 50.8 10.0 24 16-39 29-52 (178)
337 TIGR01420 pilT_fam pilus retra 95.9 0.031 6.7E-07 58.5 9.0 108 15-134 122-229 (343)
338 cd02019 NK Nucleoside/nucleoti 95.9 0.0067 1.5E-07 46.4 3.0 23 17-39 1-23 (69)
339 cd03283 ABC_MutS-like MutS-lik 95.9 0.03 6.5E-07 53.4 8.1 23 16-38 26-48 (199)
340 TIGR00150 HI0065_YjeE ATPase, 95.9 0.0081 1.8E-07 52.4 3.7 37 3-39 10-46 (133)
341 COG0464 SpoVK ATPases of the A 95.9 0.046 1E-06 60.8 10.6 131 13-166 274-424 (494)
342 PF03308 ArgK: ArgK protein; 95.8 0.024 5.1E-07 54.9 6.9 39 4-42 18-56 (266)
343 PF00158 Sigma54_activat: Sigm 95.8 0.012 2.5E-07 54.4 4.7 37 2-38 9-45 (168)
344 TIGR01425 SRP54_euk signal rec 95.8 0.12 2.5E-06 55.0 12.5 36 14-49 99-134 (429)
345 PRK10416 signal recognition pa 95.8 0.035 7.6E-07 57.0 8.5 29 14-42 113-141 (318)
346 cd03223 ABCD_peroxisomal_ALDP 95.8 0.032 6.9E-07 51.7 7.4 24 16-39 28-51 (166)
347 cd03216 ABC_Carb_Monos_I This 95.8 0.027 5.8E-07 52.0 6.9 116 16-139 27-146 (163)
348 CHL00095 clpC Clp protease ATP 95.8 0.029 6.2E-07 66.2 8.7 36 15-50 539-574 (821)
349 KOG1532 GTPase XAB1, interacts 95.8 0.056 1.2E-06 51.9 8.8 33 13-45 17-49 (366)
350 COG4608 AppF ABC-type oligopep 95.8 0.027 5.9E-07 54.8 6.9 126 15-143 39-178 (268)
351 COG0563 Adk Adenylate kinase a 95.7 0.032 6.9E-07 51.9 7.2 23 17-39 2-24 (178)
352 PF06309 Torsin: Torsin; Inte 95.7 0.039 8.5E-07 47.1 7.0 36 3-38 40-76 (127)
353 PRK04040 adenylate kinase; Pro 95.7 0.011 2.3E-07 55.9 4.1 26 15-40 2-27 (188)
354 PRK05480 uridine/cytidine kina 95.7 0.01 2.2E-07 57.5 4.1 27 13-39 4-30 (209)
355 cd03238 ABC_UvrA The excision 95.7 0.052 1.1E-06 50.5 8.5 23 15-37 21-43 (176)
356 cd03230 ABC_DR_subfamily_A Thi 95.7 0.044 9.4E-07 51.2 8.2 33 16-49 27-59 (173)
357 PRK06547 hypothetical protein; 95.7 0.013 2.8E-07 54.3 4.4 27 13-39 13-39 (172)
358 PF00560 LRR_1: Leucine Rich R 95.7 0.006 1.3E-07 34.4 1.4 22 401-422 1-22 (22)
359 KOG0729 26S proteasome regulat 95.7 0.021 4.6E-07 54.3 5.7 31 13-43 209-239 (435)
360 cd03281 ABC_MSH5_euk MutS5 hom 95.7 0.016 3.5E-07 56.0 5.3 23 15-37 29-51 (213)
361 COG0467 RAD55 RecA-superfamily 95.7 0.019 4.1E-07 57.8 5.8 47 4-50 12-58 (260)
362 PRK07132 DNA polymerase III su 95.7 0.17 3.6E-06 51.4 12.5 154 14-195 17-184 (299)
363 cd03222 ABC_RNaseL_inhibitor T 95.7 0.05 1.1E-06 50.7 8.1 25 15-39 25-49 (177)
364 PTZ00035 Rad51 protein; Provis 95.6 0.064 1.4E-06 55.7 9.6 49 2-50 105-159 (337)
365 TIGR00235 udk uridine kinase. 95.6 0.013 2.9E-07 56.6 4.3 28 13-40 4-31 (207)
366 PF00625 Guanylate_kin: Guanyl 95.6 0.012 2.7E-07 55.5 3.9 36 15-50 2-37 (183)
367 KOG0739 AAA+-type ATPase [Post 95.6 0.1 2.2E-06 51.0 9.8 152 12-190 163-335 (439)
368 cd02025 PanK Pantothenate kina 95.6 0.051 1.1E-06 52.8 8.2 24 17-40 1-24 (220)
369 COG1102 Cmk Cytidylate kinase 95.6 0.011 2.3E-07 52.2 3.0 24 17-40 2-25 (179)
370 PRK12727 flagellar biosynthesi 95.6 0.042 9.1E-07 59.3 8.1 27 15-41 350-376 (559)
371 COG1875 NYN ribonuclease and A 95.5 0.052 1.1E-06 54.6 8.1 35 12-46 242-279 (436)
372 cd03243 ABC_MutS_homologs The 95.5 0.014 3E-07 56.2 4.1 22 16-37 30-51 (202)
373 PF03205 MobB: Molybdopterin g 95.5 0.021 4.6E-07 50.8 4.9 37 16-52 1-38 (140)
374 PRK03839 putative kinase; Prov 95.5 0.012 2.6E-07 55.4 3.5 24 17-40 2-25 (180)
375 cd01125 repA Hexameric Replica 95.5 0.2 4.3E-06 49.6 12.3 24 17-40 3-26 (239)
376 PF13481 AAA_25: AAA domain; P 95.5 0.02 4.4E-07 54.7 5.1 25 16-40 33-57 (193)
377 cd03246 ABCC_Protease_Secretio 95.5 0.057 1.2E-06 50.4 8.0 33 16-49 29-61 (173)
378 cd03233 ABC_PDR_domain1 The pl 95.5 0.075 1.6E-06 51.1 8.9 24 16-39 34-57 (202)
379 PF02367 UPF0079: Uncharacteri 95.5 0.012 2.6E-07 50.5 3.0 37 3-39 3-39 (123)
380 COG0003 ArsA Predicted ATPase 95.4 0.024 5.3E-07 57.7 5.7 36 15-50 2-37 (322)
381 cd01122 GP4d_helicase GP4d_hel 95.4 0.12 2.6E-06 52.4 10.9 36 15-50 30-66 (271)
382 TIGR01360 aden_kin_iso1 adenyl 95.4 0.014 2.9E-07 55.6 3.7 26 14-39 2-27 (188)
383 cd03214 ABC_Iron-Siderophores_ 95.4 0.058 1.3E-06 50.8 8.0 121 15-138 25-161 (180)
384 cd02028 UMPK_like Uridine mono 95.4 0.019 4E-07 53.9 4.5 26 17-42 1-26 (179)
385 PRK09302 circadian clock prote 95.4 0.073 1.6E-06 59.4 9.9 49 2-50 18-67 (509)
386 TIGR02788 VirB11 P-type DNA tr 95.4 0.031 6.8E-07 57.6 6.4 109 14-134 143-252 (308)
387 PF12775 AAA_7: P-loop contain 95.4 0.014 3.1E-07 58.5 3.8 24 16-39 34-57 (272)
388 smart00534 MUTSac ATPase domai 95.4 0.039 8.4E-07 52.2 6.5 21 17-37 1-21 (185)
389 TIGR02902 spore_lonB ATP-depen 95.4 0.056 1.2E-06 60.1 8.7 25 15-39 86-110 (531)
390 PRK00625 shikimate kinase; Pro 95.3 0.015 3.2E-07 54.0 3.4 24 17-40 2-25 (173)
391 COG1428 Deoxynucleoside kinase 95.3 0.015 3.2E-07 54.1 3.3 26 15-40 4-29 (216)
392 KOG0735 AAA+-type ATPase [Post 95.3 0.19 4E-06 55.3 11.8 97 16-135 702-814 (952)
393 cd00071 GMPK Guanosine monopho 95.3 0.012 2.6E-07 52.3 2.7 27 17-43 1-27 (137)
394 PF13245 AAA_19: Part of AAA d 95.3 0.037 7.9E-07 43.1 5.0 25 15-39 10-35 (76)
395 PF00560 LRR_1: Leucine Rich R 95.3 0.0049 1.1E-07 34.8 0.1 18 615-632 2-19 (22)
396 PF03266 NTPase_1: NTPase; In 95.3 0.023 5E-07 52.4 4.5 24 18-41 2-25 (168)
397 PRK06217 hypothetical protein; 95.3 0.079 1.7E-06 50.0 8.3 24 17-40 3-26 (183)
398 PRK05917 DNA polymerase III su 95.3 0.34 7.3E-06 48.7 12.9 35 4-39 9-43 (290)
399 COG4240 Predicted kinase [Gene 95.3 0.047 1E-06 51.0 6.3 88 12-99 47-135 (300)
400 PRK00889 adenylylsulfate kinas 95.3 0.028 6.1E-07 52.7 5.1 27 15-41 4-30 (175)
401 PRK15453 phosphoribulokinase; 95.2 0.075 1.6E-06 52.6 8.1 28 14-41 4-31 (290)
402 PRK09270 nucleoside triphospha 95.2 0.023 5E-07 55.8 4.7 31 12-42 30-60 (229)
403 PRK00131 aroK shikimate kinase 95.2 0.016 3.6E-07 54.3 3.5 26 15-40 4-29 (175)
404 TIGR02239 recomb_RAD51 DNA rep 95.2 0.075 1.6E-06 54.7 8.5 50 2-51 83-138 (316)
405 cd01129 PulE-GspE PulE/GspE Th 95.2 0.078 1.7E-06 53.1 8.4 89 15-116 80-168 (264)
406 smart00763 AAA_PrkA PrkA AAA d 95.2 0.025 5.4E-07 58.1 4.9 39 2-40 61-103 (361)
407 PRK08356 hypothetical protein; 95.2 0.16 3.4E-06 48.5 10.2 21 16-36 6-26 (195)
408 COG1703 ArgK Putative periplas 95.2 0.036 7.8E-07 54.4 5.7 41 3-43 39-79 (323)
409 cd00227 CPT Chloramphenicol (C 95.2 0.018 3.8E-07 54.0 3.6 25 16-40 3-27 (175)
410 PTZ00088 adenylate kinase 1; P 95.2 0.045 9.6E-07 53.3 6.4 22 18-39 9-30 (229)
411 KOG0743 AAA+-type ATPase [Post 95.2 0.042 9.2E-07 57.1 6.4 25 15-39 235-259 (457)
412 TIGR00708 cobA cob(I)alamin ad 95.2 0.076 1.6E-06 48.6 7.4 31 15-45 5-36 (173)
413 KOG2170 ATPase of the AAA+ sup 95.2 0.035 7.6E-07 54.3 5.5 35 4-38 98-133 (344)
414 PRK11034 clpA ATP-dependent Cl 95.2 0.062 1.3E-06 61.9 8.5 26 15-40 488-513 (758)
415 PRK03846 adenylylsulfate kinas 95.1 0.034 7.3E-07 53.3 5.4 38 13-50 22-59 (198)
416 PRK07276 DNA polymerase III su 95.1 0.4 8.7E-06 48.3 13.0 67 96-163 103-173 (290)
417 PF00437 T2SE: Type II/IV secr 95.1 0.072 1.6E-06 54.0 8.0 114 3-134 115-231 (270)
418 TIGR03575 selen_PSTK_euk L-ser 95.1 0.072 1.6E-06 54.8 7.9 23 18-40 2-24 (340)
419 TIGR02782 TrbB_P P-type conjug 95.1 0.042 9.1E-07 56.1 6.1 91 16-118 133-225 (299)
420 cd03280 ABC_MutS2 MutS2 homolo 95.1 0.045 9.7E-07 52.5 6.1 22 16-37 29-50 (200)
421 PRK10751 molybdopterin-guanine 95.1 0.039 8.4E-07 50.7 5.3 28 14-41 5-32 (173)
422 PF00154 RecA: recA bacterial 95.1 0.085 1.8E-06 53.7 8.2 88 13-109 51-143 (322)
423 cd03232 ABC_PDR_domain2 The pl 95.1 0.14 3.1E-06 48.7 9.5 22 16-37 34-55 (192)
424 COG0541 Ffh Signal recognition 95.1 0.34 7.4E-06 50.5 12.4 40 2-41 80-126 (451)
425 PF02374 ArsA_ATPase: Anion-tr 95.1 0.026 5.7E-07 57.7 4.6 34 16-49 2-35 (305)
426 KOG0731 AAA+-type ATPase conta 95.0 0.37 8E-06 54.3 13.6 153 15-193 344-521 (774)
427 TIGR01817 nifA Nif-specific re 95.0 0.18 4E-06 56.6 11.7 37 3-39 207-243 (534)
428 COG1120 FepC ABC-type cobalami 95.0 0.086 1.9E-06 51.6 7.8 57 84-142 143-206 (258)
429 TIGR00455 apsK adenylylsulfate 95.0 0.2 4.2E-06 47.4 10.1 27 14-40 17-43 (184)
430 cd03278 ABC_SMC_barmotin Barmo 95.0 0.21 4.4E-06 47.7 10.2 21 17-37 24-44 (197)
431 PRK13947 shikimate kinase; Pro 95.0 0.021 4.5E-07 53.4 3.3 25 17-41 3-27 (171)
432 PLN03186 DNA repair protein RA 95.0 0.089 1.9E-06 54.5 8.2 50 2-51 110-165 (342)
433 COG0194 Gmk Guanylate kinase [ 95.0 0.027 5.8E-07 51.4 3.8 25 15-39 4-28 (191)
434 PRK05439 pantothenate kinase; 94.9 0.13 2.7E-06 52.3 9.0 30 12-41 83-112 (311)
435 COG3640 CooC CO dehydrogenase 94.9 0.044 9.5E-07 51.8 5.2 26 17-42 2-27 (255)
436 cd00984 DnaB_C DnaB helicase C 94.9 0.18 3.8E-06 50.2 10.2 46 4-50 3-49 (242)
437 cd03217 ABC_FeS_Assembly ABC-t 94.9 0.15 3.2E-06 49.0 9.2 23 16-38 27-49 (200)
438 COG1121 ZnuC ABC-type Mn/Zn tr 94.9 0.08 1.7E-06 51.6 7.2 49 87-137 147-201 (254)
439 PRK09519 recA DNA recombinatio 94.9 0.084 1.8E-06 60.2 8.4 96 3-107 47-148 (790)
440 TIGR01313 therm_gnt_kin carboh 94.9 0.18 3.8E-06 46.6 9.4 22 18-39 1-22 (163)
441 PRK05986 cob(I)alamin adenolsy 94.9 0.12 2.7E-06 48.0 8.1 26 15-40 22-47 (191)
442 cd00046 DEXDc DEAD-like helica 94.9 0.095 2.1E-06 46.7 7.4 34 17-50 2-37 (144)
443 cd02024 NRK1 Nicotinamide ribo 94.9 0.019 4.2E-07 53.7 2.8 23 17-39 1-23 (187)
444 TIGR02974 phageshock_pspF psp 94.9 0.055 1.2E-06 56.2 6.4 37 2-38 9-45 (329)
445 COG4618 ArpD ABC-type protease 94.9 0.073 1.6E-06 56.1 7.1 22 16-37 363-384 (580)
446 cd03287 ABC_MSH3_euk MutS3 hom 94.9 0.13 2.8E-06 49.8 8.6 23 15-37 31-53 (222)
447 PRK14738 gmk guanylate kinase; 94.9 0.025 5.4E-07 54.5 3.6 28 11-38 9-36 (206)
448 PRK05818 DNA polymerase III su 94.9 2.3 4.9E-05 41.9 16.9 25 15-39 7-31 (261)
449 COG2019 AdkA Archaeal adenylat 94.9 0.032 6.8E-07 49.6 3.8 25 15-39 4-28 (189)
450 cd02020 CMPK Cytidine monophos 94.8 0.022 4.8E-07 51.5 3.1 23 17-39 1-23 (147)
451 PRK09302 circadian clock prote 94.8 0.14 2.9E-06 57.3 9.9 49 2-50 260-308 (509)
452 TIGR02322 phosphon_PhnN phosph 94.8 0.024 5.1E-07 53.4 3.3 25 16-40 2-26 (179)
453 cd02023 UMPK Uridine monophosp 94.8 0.02 4.3E-07 55.0 2.8 23 17-39 1-23 (198)
454 TIGR03878 thermo_KaiC_2 KaiC d 94.8 0.049 1.1E-06 54.5 5.7 40 11-50 32-71 (259)
455 PRK13230 nitrogenase reductase 94.8 0.037 8.1E-07 56.3 5.0 35 16-50 2-36 (279)
456 PRK13768 GTPase; Provisional 94.8 0.041 8.9E-07 54.8 5.1 36 15-50 2-37 (253)
457 TIGR01287 nifH nitrogenase iro 94.8 0.032 6.8E-07 56.8 4.4 35 16-50 1-35 (275)
458 cd00267 ABC_ATPase ABC (ATP-bi 94.8 0.067 1.5E-06 49.0 6.2 114 16-140 26-145 (157)
459 PRK00279 adk adenylate kinase; 94.8 0.12 2.6E-06 50.3 8.2 23 17-39 2-24 (215)
460 cd03282 ABC_MSH4_euk MutS4 hom 94.8 0.046 9.9E-07 52.3 5.2 23 15-37 29-51 (204)
461 cd02029 PRK_like Phosphoribulo 94.8 0.098 2.1E-06 51.3 7.4 26 17-42 1-26 (277)
462 TIGR01351 adk adenylate kinase 94.8 0.13 2.8E-06 49.8 8.4 22 18-39 2-23 (210)
463 cd03284 ABC_MutS1 MutS1 homolo 94.7 0.12 2.7E-06 50.0 8.2 22 16-37 31-52 (216)
464 cd02021 GntK Gluconate kinase 94.7 0.023 4.9E-07 51.7 2.8 23 17-39 1-23 (150)
465 TIGR00554 panK_bact pantothena 94.7 0.11 2.4E-06 52.4 7.8 28 13-40 60-87 (290)
466 COG0283 Cmk Cytidylate kinase 94.7 0.029 6.3E-07 52.4 3.4 25 16-40 5-29 (222)
467 cd01124 KaiC KaiC is a circadi 94.7 0.038 8.2E-07 52.5 4.4 34 17-50 1-34 (187)
468 COG0396 sufC Cysteine desulfur 94.7 0.21 4.6E-06 47.2 9.0 59 87-147 152-216 (251)
469 CHL00206 ycf2 Ycf2; Provisiona 94.7 0.34 7.4E-06 59.8 12.9 25 15-39 1630-1654(2281)
470 KOG0736 Peroxisome assembly fa 94.7 0.081 1.7E-06 58.5 7.2 71 16-109 706-776 (953)
471 PLN02318 phosphoribulokinase/u 94.7 0.039 8.5E-07 60.1 4.8 35 5-39 55-89 (656)
472 cd02117 NifH_like This family 94.7 0.04 8.6E-07 53.5 4.6 26 16-41 1-26 (212)
473 cd01428 ADK Adenylate kinase ( 94.6 0.29 6.4E-06 46.6 10.5 22 18-39 2-23 (194)
474 PRK10463 hydrogenase nickel in 94.6 0.059 1.3E-06 53.8 5.7 34 13-46 102-135 (290)
475 PRK14737 gmk guanylate kinase; 94.6 0.029 6.4E-07 52.8 3.4 26 14-39 3-28 (186)
476 PRK13543 cytochrome c biogenes 94.6 0.18 4E-06 48.9 9.2 22 16-37 38-59 (214)
477 COG3854 SpoIIIAA ncharacterize 94.6 0.11 2.4E-06 48.8 7.0 110 16-134 138-252 (308)
478 PF00006 ATP-synt_ab: ATP synt 94.6 0.083 1.8E-06 50.7 6.5 87 16-109 16-117 (215)
479 PRK13975 thymidylate kinase; P 94.6 0.033 7.1E-07 53.4 3.8 26 16-41 3-28 (196)
480 PRK13236 nitrogenase reductase 94.6 0.052 1.1E-06 55.6 5.4 30 13-42 4-33 (296)
481 TIGR02768 TraA_Ti Ti-type conj 94.6 0.12 2.6E-06 60.0 8.8 27 16-42 369-395 (744)
482 COG0488 Uup ATPase components 94.6 0.24 5.2E-06 54.5 10.6 127 18-151 351-511 (530)
483 PRK13949 shikimate kinase; Pro 94.5 0.031 6.8E-07 51.8 3.3 25 16-40 2-26 (169)
484 cd02034 CooC The accessory pro 94.5 0.059 1.3E-06 46.2 4.7 33 18-50 2-34 (116)
485 COG2274 SunT ABC-type bacterio 94.5 0.14 2.9E-06 58.6 9.0 22 16-37 500-521 (709)
486 PLN02348 phosphoribulokinase 94.5 0.19 4.2E-06 52.3 9.3 30 13-42 47-76 (395)
487 PRK11608 pspF phage shock prot 94.5 0.07 1.5E-06 55.5 6.2 36 3-38 17-52 (326)
488 cd03240 ABC_Rad50 The catalyti 94.5 0.22 4.8E-06 47.8 9.1 21 16-36 23-43 (204)
489 PRK13948 shikimate kinase; Pro 94.5 0.035 7.7E-07 51.8 3.5 27 14-40 9-35 (182)
490 smart00072 GuKc Guanylate kina 94.5 0.032 6.9E-07 52.7 3.3 31 15-45 2-32 (184)
491 PF00406 ADK: Adenylate kinase 94.5 0.083 1.8E-06 48.0 5.9 20 20-39 1-20 (151)
492 PRK15455 PrkA family serine pr 94.5 0.037 8.1E-07 60.0 4.0 40 2-41 86-129 (644)
493 TIGR03263 guanyl_kin guanylate 94.5 0.028 6E-07 53.0 2.8 24 16-39 2-25 (180)
494 cd03213 ABCG_EPDR ABCG transpo 94.4 0.21 4.5E-06 47.6 8.9 25 15-39 35-59 (194)
495 PRK14493 putative bifunctional 94.4 0.054 1.2E-06 54.2 4.9 34 16-50 2-35 (274)
496 PRK14721 flhF flagellar biosyn 94.4 0.21 4.6E-06 53.0 9.6 25 14-38 190-214 (420)
497 PRK05973 replicative DNA helic 94.4 0.074 1.6E-06 51.8 5.7 37 14-50 63-99 (237)
498 PRK09435 membrane ATPase/prote 94.4 0.084 1.8E-06 54.3 6.4 31 12-42 53-83 (332)
499 cd00464 SK Shikimate kinase (S 94.4 0.035 7.6E-07 50.7 3.4 22 18-39 2-23 (154)
500 PF06414 Zeta_toxin: Zeta toxi 94.4 0.09 2E-06 50.4 6.3 98 13-117 13-113 (199)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=8.7e-71 Score=658.97 Aligned_cols=715 Identities=33% Similarity=0.565 Sum_probs=555.8
Q ss_pred ChhhhHhHhcCCCCeEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEEec--hh---hhcc------cChHHHHHHHH
Q 003802 1 MEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANV--RE---VSVT------RGLVPLQEQLL 69 (794)
Q Consensus 1 ~~~l~~~l~~~~~~~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~~~--~~---~~~~------~~~~~~~~~i~ 69 (794)
++++.+++....+++++|+|+||||+||||||+++|+++..+|+..+|+... .. .... .....++++++
T Consensus 193 l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l 272 (1153)
T PLN03210 193 IAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFL 272 (1153)
T ss_pred HHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccccccchhhcccccccccchhHHHHHHHH
Confidence 3567777777777899999999999999999999999999999998887531 00 0000 01123445555
Q ss_pred HHHhccccccccchhhhHHHHHHHhcCCeEEEEEcCCCChHHHHHHhcCCCCCCCCCEEEEEeCChhhhhhcCcCcEEEc
Q 003802 70 SEVLMERDLIIWDVHKGINLIRWRLCRKRVLVILDDVDQLEQLQALVGNHDWFGFGSRIIITSRDEHVLKSHGVTNTYKV 149 (794)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDd~~~~~~~~~l~~~~~~~~~gs~IlvTtR~~~v~~~~~~~~~~~l 149 (794)
.++....+.... ....+++.++++|+||||||+|+.++|+.+.....+.++|++||||||++.++..++....|++
T Consensus 273 ~~il~~~~~~~~----~~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~~~~~~~~~v 348 (1153)
T PLN03210 273 SEILDKKDIKIY----HLGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDKHFLRAHGIDHIYEV 348 (1153)
T ss_pred HHHhCCCCcccC----CHHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcHHHHHhcCCCeEEEe
Confidence 554433222111 1245778899999999999999999999998877667889999999999999888777789999
Q ss_pred CCCChHhHHHHHHhhccCCCCCChhHHHHHHHHHHHhCCCchHHHHHhhhhcCCChHHHHHHHHHHHcCCChhHHHHHHh
Q 003802 150 RGLDYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIEVLGSFLCGRSVEEWKSALNRLQEAPNEKVLKVLRI 229 (794)
Q Consensus 150 ~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~a~~L~~~~~~~w~~~l~~l~~~~~~~~~~~l~~ 229 (794)
+.+++++||++|.++||+...+.+...+++++|+++|+|+|||++++|+.|++++..+|+.++++++...+..+..++++
T Consensus 349 ~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~~~l~~L~~~~~~~I~~~L~~ 428 (1153)
T PLN03210 349 CLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDMLPRLRNGLDGKIEKTLRV 428 (1153)
T ss_pred cCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHhCccHHHHHHHHH
Confidence 99999999999999998876666678889999999999999999999999999999999999999988777889999999
Q ss_pred hccCCCh-hhHhhhhhhcccccCCCHHHHHHhhhhcCCCchhhHHHHhhcccceeecCeehHHHHHHHHHHHHHhhhCCC
Q 003802 230 SYDGLDR-RDKEIFLDIACFFKGKDEDRVRKKLDSCGFNSDIGIRELLDKSLITIVNNKLWMHDLLQEMGWEIVREHHSD 308 (794)
Q Consensus 230 sy~~L~~-~~~~~~~~~s~fp~~~~~~~l~~~~~~~g~~~~~~l~~L~~~~ll~~~~~~~~mh~li~~~~~~~~~~~~~~ 308 (794)
||+.|++ ..|.||+++|+|+.+.+.+....++...++..+.+++.|++++|++...+++.||++++++|++++..+. .
T Consensus 429 SYd~L~~~~~k~~Fl~ia~ff~~~~~~~v~~~l~~~~~~~~~~l~~L~~ksLi~~~~~~~~MHdLl~~~~r~i~~~~~-~ 507 (1153)
T PLN03210 429 SYDGLNNKKDKAIFRHIACLFNGEKVNDIKLLLANSDLDVNIGLKNLVDKSLIHVREDIVEMHSLLQEMGKEIVRAQS-N 507 (1153)
T ss_pred hhhccCccchhhhhheehhhcCCCCHHHHHHHHHhcCCCchhChHHHHhcCCEEEcCCeEEhhhHHHHHHHHHHHhhc-C
Confidence 9999987 4899999999999999988887777777887788899999999999988899999999999999999886 6
Q ss_pred CCCCccccccchhHHHHhhhccCCCeEEEEEecCCcc--cccchhhhccCCCCcEEEEcCccc----------CCCcccc
Q 003802 309 KPGKWSRLWLYKDVYHVLSKYMGTDAVEAIIVDVPEM--TELEAKSFSTMSNLRLLEINNLYS----------SGNLEYL 376 (794)
Q Consensus 309 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~l~~~~~--~~~~~~~~~~~~~L~~L~l~~n~~----------~~~~~~~ 376 (794)
.++++.++|..+++.+.+....+...++.+.+....+ ..+...+|.+|++|+.|.+..+.. .+.+...
T Consensus 508 ~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~l 587 (1153)
T PLN03210 508 EPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYL 587 (1153)
T ss_pred CCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhc
Confidence 7889999999999999999999999999988876643 456778999999999999976532 2223334
Q ss_pred ccCcceeeeecCCCCCCCCCCCCCCceEEEcCCCCcccccccccccccCceeccCCCcCccCCCCCCCCCCCCEEecccc
Q 003802 377 SNNLRYLKWHEYPFNSLPVSFRPEKLFKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGC 456 (794)
Q Consensus 377 ~~~l~~L~~~~~~~~~l~~~~~~~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~n~~~~~~~~~~~l~~L~~L~l~~~ 456 (794)
+.+|+.|.+.++.+..+|..+.+.+|+.|++++|.+..+|.++..+++|+.|+|++|......|.++.+++|++|++++|
T Consensus 588 p~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c 667 (1153)
T PLN03210 588 PPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDC 667 (1153)
T ss_pred CcccEEEEecCCCCCCCCCcCCccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCC
Confidence 46799999999999999999999999999999999999999999999999999999988888888999999999999999
Q ss_pred cccccccccccCccccccccccccccccccccccCCCCCccEEEecCCCCCCCCCccccCCCCCcEEEccCccCcccCcc
Q 003802 457 TRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPPS 536 (794)
Q Consensus 457 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~ 536 (794)
.....+|..+.++++|++|++++|...+.+|..+ ++++|++|++++|.....+|.. .++|+.|++++|.++.+|..
T Consensus 668 ~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~lP~~ 743 (1153)
T PLN03210 668 SSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEEFPSN 743 (1153)
T ss_pred CCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCcccccccc
Confidence 9999999999999999999999999899999876 7999999999999888777753 46789999999998888765
Q ss_pred cccCCCCCEEEc-------------------------------CCCC--CCCCccccccchhccccCCCCCCCccccCCC
Q 003802 537 IVQLVNLKIFSL-------------------------------HGCK--GQPPKILSSNFFLSLLLPNKNSDSMCLSFPR 583 (794)
Q Consensus 537 l~~l~~L~~L~l-------------------------------~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 583 (794)
+ .+++|++|.+ ++|. ...|..+.....+..+.+..+.. ...++.
T Consensus 744 ~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~--L~~LP~ 820 (1153)
T PLN03210 744 L-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCIN--LETLPT 820 (1153)
T ss_pred c-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCC--cCeeCC
Confidence 4 3444444444 4443 22233222222222222221111 112222
Q ss_pred CCCCCCCCEEecCCCCCccCCCCccccCCCCCCeEeCCCCCCccCchhhhccCCCCEEecCCCcCCCCCCCCC---cccc
Q 003802 584 FTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLPSSINQLLKLKILCLEKCRNLKSLPELP---PEIV 660 (794)
Q Consensus 584 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~~~~~---~~L~ 660 (794)
..++++|+.|++++|..+. .+|. ..++|+.|+|++|.++.+|.++..+++|+.|+|++|+.++.+|..+ ++|+
T Consensus 821 ~~~L~sL~~L~Ls~c~~L~-~~p~---~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~ 896 (1153)
T PLN03210 821 GINLESLESLDLSGCSRLR-TFPD---ISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLE 896 (1153)
T ss_pred CCCccccCEEECCCCCccc-cccc---cccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCC
Confidence 2245566666666655322 1222 2357888888888889999999999999999999999888877544 5677
Q ss_pred ccccccccccccccccccc------------cCCCCceEEEeCCCCchhhhhhhhhHHHHHHHHHHhhhccccccCcccc
Q 003802 661 FVGAEDCTSLETISAFAKL------------SRSPNIALNFLNCFKLVEDQVSKDNLAVTLMKQWLLSYHSLVAWTDSTR 728 (794)
Q Consensus 661 ~L~l~~~~~L~~l~~~~n~------------~~~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~~~~~l~~~~~~~~ 728 (794)
.+++++|++|+.+.+.... .........+.+|.+|..-.+-.++. ....-.......|.
T Consensus 897 ~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC~~L~~~a~l~~~~---------~~~~~~l~g~evp~ 967 (1153)
T PLN03210 897 TVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFINCFNLDQEALLQQQS---------IFKQLILSGEEVPS 967 (1153)
T ss_pred eeecCCCcccccccCCCCchhhhhhcccccccCCchhccccccccCCCchhhhcccc---------cceEEECCCccCch
Confidence 7789999999877653320 01112344677787764322111100 00112234456778
Q ss_pred ccccccccceee
Q 003802 729 RFNVNYYGEKTI 740 (794)
Q Consensus 729 ~~~~~~~~~~~~ 740 (794)
||.++..|....
T Consensus 968 ~f~hr~~g~sl~ 979 (1153)
T PLN03210 968 YFTHRTTGASLT 979 (1153)
T ss_pred hccCCcccceee
Confidence 888888886664
No 2
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=3.8e-62 Score=551.46 Aligned_cols=428 Identities=28% Similarity=0.370 Sum_probs=334.0
Q ss_pred hhhhHhHhcCCCCeEEEEEEccCCCcHHHHHHHHHH--H-hhccccceEEEEechhhhcccChHHHHHHHHHHHhccccc
Q 003802 2 EKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYN--T-LKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDL 78 (794)
Q Consensus 2 ~~l~~~l~~~~~~~~vi~i~G~~GvGKTtLa~~v~~--~-~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 78 (794)
+++.+.|...+ ..+++|+||||+||||||+++++ . ++.+|+.++||. +|+.++...++++|+..+......
T Consensus 168 ~kl~~~L~~d~--~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~----VSk~f~~~~iq~~Il~~l~~~~~~ 241 (889)
T KOG4658|consen 168 EKLWNRLMEDD--VGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVV----VSKEFTTRKIQQTILERLGLLDEE 241 (889)
T ss_pred HHHHHHhccCC--CCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEE----EcccccHHhHHHHHHHHhccCCcc
Confidence 34444454433 38999999999999999999999 3 789999999999 888999999999999986653322
Q ss_pred -cccchhhhHHHHHHHhcCCeEEEEEcCCCChHHHHHHhcCCCCCCCCCEEEEEeCChhhhhh-cCcCcEEEcCCCChHh
Q 003802 79 -IIWDVHKGINLIRWRLCRKRVLVILDDVDQLEQLQALVGNHDWFGFGSRIIITSRDEHVLKS-HGVTNTYKVRGLDYVE 156 (794)
Q Consensus 79 -~~~~~~~~~~~l~~~l~~~r~LlVlDd~~~~~~~~~l~~~~~~~~~gs~IlvTtR~~~v~~~-~~~~~~~~l~~L~~~e 156 (794)
.....++.+..+.+.|++|||+||+||+|+..+|+.+..++|...+||+|++|||++.|+.. ++....++++.|+.+|
T Consensus 242 ~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~e 321 (889)
T KOG4658|consen 242 WEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEE 321 (889)
T ss_pred cchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccccCccc
Confidence 22234678889999999999999999999999999999999988899999999999999998 8888899999999999
Q ss_pred HHHHHHhhccCC-CCCChhHHHHHHHHHHHhCCCchHHHHHhhhhcC-CChHHHHHHHHHHHcC-------CChhHHHHH
Q 003802 157 ALQLFHLKVSNG-KQPTDYRVELSKYVVNYAGGLPLAIEVLGSFLCG-RSVEEWKSALNRLQEA-------PNEKVLKVL 227 (794)
Q Consensus 157 a~~lf~~~~~~~-~~~~~~~~~~~~~i~~~~~g~Plai~~~a~~L~~-~~~~~w~~~l~~l~~~-------~~~~~~~~l 227 (794)
||++|.+.++.. ....+..+++|++++++|+|+|+|+.++|+.|+. ++..+|+++.+.+... ..+.+..++
T Consensus 322 aW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iL 401 (889)
T KOG4658|consen 322 AWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPIL 401 (889)
T ss_pred cHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhh
Confidence 999999999766 4455668999999999999999999999999998 5777999999987654 136788999
Q ss_pred HhhccCCChhhHhhhhhhcccccCCCH--HHHHHhhhhcCCCc------------hhhHHHHhhcccceeec-----Cee
Q 003802 228 RISYDGLDRRDKEIFLDIACFFKGKDE--DRVRKKLDSCGFNS------------DIGIRELLDKSLITIVN-----NKL 288 (794)
Q Consensus 228 ~~sy~~L~~~~~~~~~~~s~fp~~~~~--~~l~~~~~~~g~~~------------~~~l~~L~~~~ll~~~~-----~~~ 288 (794)
++||+.||++.|.||+|||+||+++.+ ++++..|+|+||+. +.++++|++++|+.... ..+
T Consensus 402 klSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~ 481 (889)
T KOG4658|consen 402 KLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKETV 481 (889)
T ss_pred hccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccceeEE
Confidence 999999998899999999999999965 78999999999864 45699999999999875 679
Q ss_pred hHHHHHHHHHHHHHhhhCCCC-------------------CCCccccccchhHHHHhhhccCCCeEEEEEecCCc--ccc
Q 003802 289 WMHDLLQEMGWEIVREHHSDK-------------------PGKWSRLWLYKDVYHVLSKYMGTDAVEAIIVDVPE--MTE 347 (794)
Q Consensus 289 ~mh~li~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~l~~~~--~~~ 347 (794)
+|||++|++|.+++.+..... ....+|...+.+.............++++.+..+. +..
T Consensus 482 kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~ 561 (889)
T KOG4658|consen 482 KMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLE 561 (889)
T ss_pred EeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhh
Confidence 999999999999999433211 11234444444444444444444455666655553 455
Q ss_pred cchhhhccCCCCcEEEEcCcccCCCccccccCcceeeeecCCCCCCCCCC-CCCCceEEEcCCCCcccccccccccccCc
Q 003802 348 LEAKSFSTMSNLRLLEINNLYSSGNLEYLSNNLRYLKWHEYPFNSLPVSF-RPEKLFKLNLCNSRIKYLWKGIKPLKELK 426 (794)
Q Consensus 348 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~~~~~~~~l~~~~-~~~~L~~L~L~~n~i~~l~~~~~~l~~L~ 426 (794)
++..+|..++.|++|||++|.- ..++|..+ .+-+|++|+++++.++.+|.++.+|+.|.
T Consensus 562 is~~ff~~m~~LrVLDLs~~~~--------------------l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~ 621 (889)
T KOG4658|consen 562 ISGEFFRSLPLLRVLDLSGNSS--------------------LSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLI 621 (889)
T ss_pred cCHHHHhhCcceEEEECCCCCc--------------------cCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhh
Confidence 5555566666666666665332 23344433 24467777777777777777777777777
Q ss_pred eeccCCCcCccCCCC-CCCCCCCCEEeccc
Q 003802 427 FMNLSHSCNLIRTPD-FTGVPNLERLNLEG 455 (794)
Q Consensus 427 ~L~L~~n~~~~~~~~-~~~l~~L~~L~l~~ 455 (794)
+|++..+.....++. ...+++|++|.+..
T Consensus 622 ~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 622 YLNLEVTGRLESIPGILLELQSLRVLRLPR 651 (889)
T ss_pred eeccccccccccccchhhhcccccEEEeec
Confidence 777777665555555 33477777776655
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=7.3e-39 Score=329.90 Aligned_cols=265 Identities=32% Similarity=0.493 Sum_probs=211.6
Q ss_pred ChhhhHhHhcCCCCeEEEEEEccCCCcHHHHHHHHHHH--hhccccceEEEEechhhhcccChHHHHHHHHHHHhccccc
Q 003802 1 MEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNT--LKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDL 78 (794)
Q Consensus 1 ~~~l~~~l~~~~~~~~vi~i~G~~GvGKTtLa~~v~~~--~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 78 (794)
+++|.+.|....++.++|+|+|+||+||||||++++++ ++++|+.++|+. ++......++..+++..+......
T Consensus 5 ~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~----~~~~~~~~~~~~~i~~~l~~~~~~ 80 (287)
T PF00931_consen 5 IEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVS----LSKNPSLEQLLEQILRQLGEPDSS 80 (287)
T ss_dssp HHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEE----EES-SCCHHHHHHHHHHHTCC-ST
T ss_pred HHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccc----cccccccccccccccccccccccc
Confidence 36788888886688999999999999999999999987 889999999998 555666688889999887666432
Q ss_pred --cccchhhhHHHHHHHhcCCeEEEEEcCCCChHHHHHHhcCCCCCCCCCEEEEEeCChhhhhhcCc-CcEEEcCCCChH
Q 003802 79 --IIWDVHKGINLIRWRLCRKRVLVILDDVDQLEQLQALVGNHDWFGFGSRIIITSRDEHVLKSHGV-TNTYKVRGLDYV 155 (794)
Q Consensus 79 --~~~~~~~~~~~l~~~l~~~r~LlVlDd~~~~~~~~~l~~~~~~~~~gs~IlvTtR~~~v~~~~~~-~~~~~l~~L~~~ 155 (794)
...+.++....+.+.++++++||||||+|+...|+.+...++....|++||||||+..++..+.. ...+++++|+.+
T Consensus 81 ~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~~~ 160 (287)
T PF00931_consen 81 ISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLSEE 160 (287)
T ss_dssp SSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--HH
T ss_pred cccccccccccccchhhhccccceeeeeeecccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 34566778899999999999999999999999999988877766779999999999988876654 678999999999
Q ss_pred hHHHHHHhhccCCC-CCChhHHHHHHHHHHHhCCCchHHHHHhhhhcC-CChHHHHHHHHHHHcC------CChhHHHHH
Q 003802 156 EALQLFHLKVSNGK-QPTDYRVELSKYVVNYAGGLPLAIEVLGSFLCG-RSVEEWKSALNRLQEA------PNEKVLKVL 227 (794)
Q Consensus 156 ea~~lf~~~~~~~~-~~~~~~~~~~~~i~~~~~g~Plai~~~a~~L~~-~~~~~w~~~l~~l~~~------~~~~~~~~l 227 (794)
||++||.+.++... ......++.+++|+++|+|+|+|++++|++|+. .+..+|+..++.+... ....+..++
T Consensus 161 ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l 240 (287)
T PF00931_consen 161 EALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFSAL 240 (287)
T ss_dssp HHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999986554 233444578999999999999999999999955 3678899998876533 247899999
Q ss_pred HhhccCCChhhHhhhhhhcccccCCC--HHHHHHhhhhcCCCch
Q 003802 228 RISYDGLDRRDKEIFLDIACFFKGKD--EDRVRKKLDSCGFNSD 269 (794)
Q Consensus 228 ~~sy~~L~~~~~~~~~~~s~fp~~~~--~~~l~~~~~~~g~~~~ 269 (794)
..||+.||++.|+||.||++||+++. .+.++.+|.++|++..
T Consensus 241 ~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~ 284 (287)
T PF00931_consen 241 ELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISS 284 (287)
T ss_dssp HHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC-
T ss_pred eechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCcc
Confidence 99999999999999999999999985 6889999999998764
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.1e-32 Score=332.08 Aligned_cols=374 Identities=21% Similarity=0.207 Sum_probs=269.9
Q ss_pred CeEEEEEecCCcccccchhhhccCCCCcEEEEcCcccCCCcccc----ccCcceeeeecCCCCCCCCCCCCCCceEEEcC
Q 003802 333 DAVEAIIVDVPEMTELEAKSFSTMSNLRLLEINNLYSSGNLEYL----SNNLRYLKWHEYPFNSLPVSFRPEKLFKLNLC 408 (794)
Q Consensus 333 ~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~----~~~l~~L~~~~~~~~~l~~~~~~~~L~~L~L~ 408 (794)
..++.++++.+.+....+..|..+++|++|++++|.+.+.+|.. +.+|++|++.++.+........+++|++|+++
T Consensus 69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls 148 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLS 148 (968)
T ss_pred CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECc
Confidence 47888888888777777788889999999999998888766643 34666666666655432222346788999999
Q ss_pred CCCcc-cccccccccccCceeccCCCcCccCCCC-CCCCCCCCEEecccccccccccccccCcccccccccccccccccc
Q 003802 409 NSRIK-YLWKGIKPLKELKFMNLSHSCNLIRTPD-FTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSF 486 (794)
Q Consensus 409 ~n~i~-~l~~~~~~l~~L~~L~L~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 486 (794)
+|.+. .+|..+..+++|++|++++|.+....|. +.++++|++|++++|.+.+.+|..++++++|++|++++|.+.+.+
T Consensus 149 ~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~ 228 (968)
T PLN00113 149 NNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEI 228 (968)
T ss_pred CCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcC
Confidence 98887 6677788889999999998887766665 888888999999988888888888888889999999888888888
Q ss_pred ccccCCCCCccEEEecCCCCCCCCCccccCCCCCcEEEccCccCc-ccCcccccCCCCCEEEcCCCC--CCCCccccccc
Q 003802 487 PKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIR-QIPPSIVQLVNLKIFSLHGCK--GQPPKILSSNF 563 (794)
Q Consensus 487 ~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~l~~l~~L~~L~l~~~~--~~~~~~~~~~~ 563 (794)
|..++++++|++|++++|.+.+.+|..++++++|+.|++++|.+. .+|..+.++++|++|++++|. +..|..+....
T Consensus 229 p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~ 308 (968)
T PLN00113 229 PYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQ 308 (968)
T ss_pred ChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCC
Confidence 888888889999999888888888888888888999998888876 677788888888888888887 34454444444
Q ss_pred hhccccCCCCCCCccccCCCCCCCCCCCEEecCCCCCccCCCCccccCCCCCCeEeCCCCCCc-cCchhhhccCCCCEEe
Q 003802 564 FLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFF-SLPSSINQLLKLKILC 642 (794)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~ 642 (794)
.+..+.+..+..... ....+..+++|+.|++++|. +.+.+|..++.+++|+.|++++|+++ .+|..+..+++|+.|+
T Consensus 309 ~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~L~~n~-l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~ 386 (968)
T PLN00113 309 NLEILHLFSNNFTGK-IPVALTSLPRLQVLQLWSNK-FSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLI 386 (968)
T ss_pred CCcEEECCCCccCCc-CChhHhcCCCCCEEECcCCC-CcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEE
Confidence 444444444433321 12236677788888888887 55667777777888888888888776 6677777777777777
Q ss_pred cCCCcCCCCCCCC---Cccccccccc-------------cccccccccccccccCCCCceEEEeCCCCchhhhhhhhhHH
Q 003802 643 LEKCRNLKSLPEL---PPEIVFVGAE-------------DCTSLETISAFAKLSRSPNIALNFLNCFKLVEDQVSKDNLA 706 (794)
Q Consensus 643 L~~n~~~~~~~~~---~~~L~~L~l~-------------~~~~L~~l~~~~n~~~~~~~~~~~~~~~~L~~L~l~~N~l~ 706 (794)
+++|+....+|.. .++|+.|+++ +++.|+.+++++| ...+..+..+..+++|+.|++++|.+.
T Consensus 387 l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~n~~~ 465 (968)
T PLN00113 387 LFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNN-NLQGRINSRKWDMPSLQMLSLARNKFF 465 (968)
T ss_pred CcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCC-cccCccChhhccCCCCcEEECcCceee
Confidence 7777766555531 1233333332 2345555555555 333444445556666777777766665
Q ss_pred HHH
Q 003802 707 VTL 709 (794)
Q Consensus 707 ~~~ 709 (794)
+..
T Consensus 466 ~~~ 468 (968)
T PLN00113 466 GGL 468 (968)
T ss_pred eec
Confidence 443
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.1e-32 Score=332.12 Aligned_cols=374 Identities=21% Similarity=0.227 Sum_probs=242.3
Q ss_pred CCeEEEEEecCCcccccchhhhccCCCCcEEEEcCcccCCCccccccC---cceeeeecCCCC-CCCCCC-CCCCceEEE
Q 003802 332 TDAVEAIIVDVPEMTELEAKSFSTMSNLRLLEINNLYSSGNLEYLSNN---LRYLKWHEYPFN-SLPVSF-RPEKLFKLN 406 (794)
Q Consensus 332 ~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~---l~~L~~~~~~~~-~l~~~~-~~~~L~~L~ 406 (794)
...++.++++.|.+....+..++++++|++|++++|.+.+.+|..+.+ |++|++.+|.+. .+|..+ .+.+|++|+
T Consensus 139 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 218 (968)
T PLN00113 139 IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIY 218 (968)
T ss_pred cCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEE
Confidence 456777788777776666677888888888888888877777765554 444444444433 234333 567888888
Q ss_pred cCCCCcc-cccccccccccCceeccCCCcCccCCCC-CCCCCCCCEEecccccccccccccccCcccccccccccccccc
Q 003802 407 LCNSRIK-YLWKGIKPLKELKFMNLSHSCNLIRTPD-FTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLV 484 (794)
Q Consensus 407 L~~n~i~-~l~~~~~~l~~L~~L~L~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 484 (794)
+++|.+. .+|..+.++++|++|++++|.+....|. +.++++|++|++++|.+.+..|..+.++++|++|++++|.+.+
T Consensus 219 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~ 298 (968)
T PLN00113 219 LGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSG 298 (968)
T ss_pred CcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeecc
Confidence 8888877 5677788888888888888877666555 7788888888888888777778788888888888888887777
Q ss_pred ccccccCCCCCccEEEecCCCCCCCCCccccCCCCCcEEEccCccCc-ccCcccccCCCCCEEEcCCCC--CCCCccccc
Q 003802 485 SFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIR-QIPPSIVQLVNLKIFSLHGCK--GQPPKILSS 561 (794)
Q Consensus 485 ~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~l~~l~~L~~L~l~~~~--~~~~~~~~~ 561 (794)
.+|..+.++++|++|++++|.+.+..|..+..+++|+.|++++|.+. .+|..++.+++|+.|++++|. +..|..+..
T Consensus 299 ~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~ 378 (968)
T PLN00113 299 EIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCS 378 (968)
T ss_pred CCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhC
Confidence 77877788888888888888887777777888888888888888776 677777788888888888776 334443333
Q ss_pred cchhccccCCCCCCCccccCCCCCCCCCCCEEecCCCCCccCCCCccccCCCCCCeEeCCCCCCc-cCchhhhccCCCCE
Q 003802 562 NFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFF-SLPSSINQLLKLKI 640 (794)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~ 640 (794)
...+..+.+..|..... ....+..+++|+.|++++|. +++.+|..+..+++|+.|++++|.++ .+|..+..+++|+.
T Consensus 379 ~~~L~~L~l~~n~l~~~-~p~~~~~~~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 456 (968)
T PLN00113 379 SGNLFKLILFSNSLEGE-IPKSLGACRSLRRVRLQDNS-FSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQM 456 (968)
T ss_pred cCCCCEEECcCCEeccc-CCHHHhCCCCCCEEECcCCE-eeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcE
Confidence 22233333333332211 11235566777777777776 45556666667777777777777666 44555556666666
Q ss_pred EecCCCcCCCCCCCCC--cccccccccc-------------ccccccccccccccCCCCceEEEeCCCCchhhhhhhhhH
Q 003802 641 LCLEKCRNLKSLPELP--PEIVFVGAED-------------CTSLETISAFAKLSRSPNIALNFLNCFKLVEDQVSKDNL 705 (794)
Q Consensus 641 L~L~~n~~~~~~~~~~--~~L~~L~l~~-------------~~~L~~l~~~~n~~~~~~~~~~~~~~~~L~~L~l~~N~l 705 (794)
|++++|+..+.+|... ++|+.|++++ +++|+.|++++| ...+..+..+.+|++|++|++++|.+
T Consensus 457 L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~Ls~N~l 535 (968)
T PLN00113 457 LSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSEN-KLSGEIPDELSSCKKLVSLDLSHNQL 535 (968)
T ss_pred EECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCC-cceeeCChHHcCccCCCEEECCCCcc
Confidence 6666666554444321 2334343322 234444444444 22233333444445555555555544
Q ss_pred HHH
Q 003802 706 AVT 708 (794)
Q Consensus 706 ~~~ 708 (794)
++.
T Consensus 536 ~~~ 538 (968)
T PLN00113 536 SGQ 538 (968)
T ss_pred ccc
Confidence 443
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.96 E-value=8.6e-31 Score=265.31 Aligned_cols=358 Identities=17% Similarity=0.132 Sum_probs=255.8
Q ss_pred CCeEEEEEecCCcccccchhhhccCCCCcEEEEcCcccCCCc--cccccCcceeeeecCCCCCCCCCC--CCCCceEEEc
Q 003802 332 TDAVEAIIVDVPEMTELEAKSFSTMSNLRLLEINNLYSSGNL--EYLSNNLRYLKWHEYPFNSLPVSF--RPEKLFKLNL 407 (794)
Q Consensus 332 ~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~~~l~~L~~~~~~~~~l~~~~--~~~~L~~L~L 407 (794)
...++.+++++|.+..+....|.++++|+.+++..|.++.+. ....++++.|.+.+|-+.++.+.- ..+.|++|||
T Consensus 77 p~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDL 156 (873)
T KOG4194|consen 77 PSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDL 156 (873)
T ss_pred ccceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhh
Confidence 467789999999999999999999999999999999887543 244567888888888887776543 5678999999
Q ss_pred CCCCccccccc-ccccccCceeccCCCcCccCCCC-CCCCCCCCEEecccccccccccccccCccccccccccccccccc
Q 003802 408 CNSRIKYLWKG-IKPLKELKFMNLSHSCNLIRTPD-FTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVS 485 (794)
Q Consensus 408 ~~n~i~~l~~~-~~~l~~L~~L~L~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 485 (794)
|.|.|+++|.. |..-.++++|+|++|.+.....+ |.++.+|-+|.|++|.++...+..|.+|++|+.|+|..|.+.-.
T Consensus 157 SrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iriv 236 (873)
T KOG4194|consen 157 SRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIV 236 (873)
T ss_pred hhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeee
Confidence 99999999865 78888999999999998887766 99999999999999998877778899999999999999886443
Q ss_pred cccccCCCCCccEEEecCCCCCCCCCccccCCCCCcEEEccCccCcccC-cccccCCCCCEEEcCCCCCCCCccccccch
Q 003802 486 FPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIP-PSIVQLVNLKIFSLHGCKGQPPKILSSNFF 564 (794)
Q Consensus 486 ~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 564 (794)
--..|..+++|+.|.|..|.+...-...|..+.++++|+|..|++..+- .++.+++.|+.|+++.|...
T Consensus 237 e~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~---------- 306 (873)
T KOG4194|consen 237 EGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQ---------- 306 (873)
T ss_pred hhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhh----------
Confidence 3456888999999999999888877778999999999999999998664 46778999999999998732
Q ss_pred hccccCCCCCCCccccCCCCCCCCCCCEEecCCCCCccCCCCccccCCCCCCeEeCCCCCCccCch-hhhccCCCCEEec
Q 003802 565 LSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLPS-SINQLLKLKILCL 643 (794)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~L 643 (794)
......++-+++|+.|+|++|. ++..-+..|..+..|++|+|++|.++.+.. .|..+++|++|||
T Consensus 307 -------------rih~d~WsftqkL~~LdLs~N~-i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdL 372 (873)
T KOG4194|consen 307 -------------RIHIDSWSFTQKLKELDLSSNR-ITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDL 372 (873)
T ss_pred -------------eeecchhhhcccceeEeccccc-cccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcC
Confidence 1122335555666666666666 333344455555666666666665554432 3455555666666
Q ss_pred CCCcCCCCCCCCC------cccccc-------------ccccccccccccccccccCCCCceEEEeCCCCchhhhhhhhh
Q 003802 644 EKCRNLKSLPELP------PEIVFV-------------GAEDCTSLETISAFAKLSRSPNIALNFLNCFKLVEDQVSKDN 704 (794)
Q Consensus 644 ~~n~~~~~~~~~~------~~L~~L-------------~l~~~~~L~~l~~~~n~~~~~~~~~~~~~~~~L~~L~l~~N~ 704 (794)
++|.+...+.+.. ++|+.| .+++++.|+.|++.+| .+....+..|..+ .|+.|-+..-.
T Consensus 373 r~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~N-aiaSIq~nAFe~m-~Lk~Lv~nSss 450 (873)
T KOG4194|consen 373 RSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDN-AIASIQPNAFEPM-ELKELVMNSSS 450 (873)
T ss_pred cCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCC-cceeecccccccc-hhhhhhhcccc
Confidence 6555433222100 111111 2345566666666655 3334444455555 56665554333
Q ss_pred HH----HHHHHHHHh
Q 003802 705 LA----VTLMKQWLL 715 (794)
Q Consensus 705 l~----~~~~~~~~~ 715 (794)
+- -.|...|+.
T Consensus 451 flCDCql~Wl~qWl~ 465 (873)
T KOG4194|consen 451 FLCDCQLKWLAQWLY 465 (873)
T ss_pred eEEeccHHHHHHHHH
Confidence 32 245555553
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.95 E-value=1.6e-28 Score=249.03 Aligned_cols=362 Identities=17% Similarity=0.125 Sum_probs=282.5
Q ss_pred eEEEEEecCCcccccchhhhccC--CCCcEEEEcCcccCCCcccccc---CcceeeeecCCCCCCCCCC-CCCCceEEEc
Q 003802 334 AVEAIIVDVPEMTELEAKSFSTM--SNLRLLEINNLYSSGNLEYLSN---NLRYLKWHEYPFNSLPVSF-RPEKLFKLNL 407 (794)
Q Consensus 334 ~~~~l~l~~~~~~~~~~~~~~~~--~~L~~L~l~~n~~~~~~~~~~~---~l~~L~~~~~~~~~l~~~~-~~~~L~~L~L 407 (794)
..+.++.+...+..+....+.++ +.-++|++++|.+...-+..+. +|+.+.+..|.+..+|... ...+|+.|+|
T Consensus 53 ~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L 132 (873)
T KOG4194|consen 53 NTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDL 132 (873)
T ss_pred CceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEee
Confidence 34556666666666655555554 4456699999999987776554 6666677777788888877 4567999999
Q ss_pred CCCCccccc-ccccccccCceeccCCCcCccCCCC-CCCCCCCCEEecccccccccccccccCccccccccccccccccc
Q 003802 408 CNSRIKYLW-KGIKPLKELKFMNLSHSCNLIRTPD-FTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVS 485 (794)
Q Consensus 408 ~~n~i~~l~-~~~~~l~~L~~L~L~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 485 (794)
.+|.|+++. +.++.++.|+.||||.|.+...... |..-.++++|+|++|.+...-...|.++.+|..|.|+.|+++..
T Consensus 133 ~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittL 212 (873)
T KOG4194|consen 133 RHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTL 212 (873)
T ss_pred eccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccccc
Confidence 999999885 4489999999999999988777654 88888999999999998887778999999999999999998777
Q ss_pred cccccCCCCCccEEEecCCCCCCCCCccccCCCCCcEEEccCccCcccCcc-cccCCCCCEEEcCCCCCCCCccccccch
Q 003802 486 FPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPPS-IVQLVNLKIFSLHGCKGQPPKILSSNFF 564 (794)
Q Consensus 486 ~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 564 (794)
.+..|+++++|+.|+|..|.+...---.|.++++|+.|.|..|.+..+.++ |..|.++++|+|+.|....
T Consensus 213 p~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~--------- 283 (873)
T KOG4194|consen 213 PQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQA--------- 283 (873)
T ss_pred CHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhh---------
Confidence 778888899999999999887655455689999999999999999987654 5679999999999988321
Q ss_pred hccccCCCCCCCccccCCCCCCCCCCCEEecCCCCCccCCCCccccCCCCCCeEeCCCCCCccCch-hhhccCCCCEEec
Q 003802 565 LSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLPS-SINQLLKLKILCL 643 (794)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~L 643 (794)
..-..+-+++.|+.|++|+|. +....++....+++|+.|+|++|+|+.+++ .|..+..|++|+|
T Consensus 284 --------------vn~g~lfgLt~L~~L~lS~Na-I~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnL 348 (873)
T KOG4194|consen 284 --------------VNEGWLFGLTSLEQLDLSYNA-IQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNL 348 (873)
T ss_pred --------------hhcccccccchhhhhccchhh-hheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcc
Confidence 112347789999999999999 666678888899999999999999998865 5888999999999
Q ss_pred CCCcCCCCCCCCCccccccccccccccccccccccccCCC--CceEEEeCCCCchhhhhhhhhHHHHHHHHHHhhhcccc
Q 003802 644 EKCRNLKSLPELPPEIVFVGAEDCTSLETISAFAKLSRSP--NIALNFLNCFKLVEDQVSKDNLAVTLMKQWLLSYHSLV 721 (794)
Q Consensus 644 ~~n~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~n~~~~~--~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~~~~~l~ 721 (794)
++|.+. +|.+-.+.++.+|+.|++.+|..... .....|.++++|+.|++.+|++. .++++-+.++..+.
T Consensus 349 s~Nsi~--------~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk-~I~krAfsgl~~LE 419 (873)
T KOG4194|consen 349 SHNSID--------HLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLK-SIPKRAFSGLEALE 419 (873)
T ss_pred cccchH--------HHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceee-ecchhhhccCcccc
Confidence 999832 23344566677788887777733222 12335667888888888888876 44455556666666
Q ss_pred ccCcccc
Q 003802 722 AWTDSTR 728 (794)
Q Consensus 722 ~~~~~~~ 728 (794)
.++...|
T Consensus 420 ~LdL~~N 426 (873)
T KOG4194|consen 420 HLDLGDN 426 (873)
T ss_pred eecCCCC
Confidence 6655443
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.93 E-value=9.4e-29 Score=252.15 Aligned_cols=333 Identities=18% Similarity=0.239 Sum_probs=241.2
Q ss_pred CeEEEEEecCCcccccchhhhccCCCCcEEEEcCcccCCCcc--ccccCcceeeeecCCCC--CCCCCC-CCCCceEEEc
Q 003802 333 DAVEAIIVDVPEMTELEAKSFSTMSNLRLLEINNLYSSGNLE--YLSNNLRYLKWHEYPFN--SLPVSF-RPEKLFKLNL 407 (794)
Q Consensus 333 ~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~--~~~~~l~~L~~~~~~~~--~l~~~~-~~~~L~~L~L 407 (794)
.+++-+.+....+..+ +..++.+.+|++|.+++|.+..... ..++.|+.+...+|+++ .+|..+ .+..|.+|||
T Consensus 32 t~~~WLkLnrt~L~~v-PeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDL 110 (1255)
T KOG0444|consen 32 TQMTWLKLNRTKLEQV-PEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDL 110 (1255)
T ss_pred hheeEEEechhhhhhC-hHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeec
Confidence 4555666665555554 4677888889999998887764322 33456677766666654 356554 7889999999
Q ss_pred CCCCcccccccccccccCceeccCCCcCccCCCC-CCCCCCCCEEecccccccccccccccCcccccccccccccccccc
Q 003802 408 CNSRIKYLWKGIKPLKELKFMNLSHSCNLIRTPD-FTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSF 486 (794)
Q Consensus 408 ~~n~i~~l~~~~~~l~~L~~L~L~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 486 (794)
|+|.+++.|..+..-+++-+|+||+|++.+.+.. |.+++.|-.|||++|. ...+|..+..+.+|++|+|++|++...-
T Consensus 111 ShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~Nr-Le~LPPQ~RRL~~LqtL~Ls~NPL~hfQ 189 (1255)
T KOG0444|consen 111 SHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNR-LEMLPPQIRRLSMLQTLKLSNNPLNHFQ 189 (1255)
T ss_pred chhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccch-hhhcCHHHHHHhhhhhhhcCCChhhHHH
Confidence 9999999999999999999999999988777766 8889999999999876 4567888899999999999998865433
Q ss_pred ccccCCCCCccEEEecCCCCC-CCCCccccCCCCCcEEEccCccCcccCcccccCCCCCEEEcCCCCCCCCccccccchh
Q 003802 487 PKNVCLMKSLKILCLCGCLKL-EKLPQDLGEVECLEELDVGGTAIRQIPPSIVQLVNLKIFSLHGCKGQPPKILSSNFFL 565 (794)
Q Consensus 487 ~~~~~~l~~L~~L~L~~~~~~-~~~~~~~~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 565 (794)
-..+..+++|++|.+++.+-+ ..+|.++..+.||..+|+|.|.+..+|..+-++++|+.|++++|....-.
T Consensus 190 LrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~-------- 261 (1255)
T KOG0444|consen 190 LRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELN-------- 261 (1255)
T ss_pred HhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeee--------
Confidence 334456788888888886543 45788889999999999999999999999999999999999998722110
Q ss_pred ccccCCCCCCCccccCCCCCCCCCCCEEecCCCCCccCCCCccccCCCCCCeEeCCCCCCc--cCchhhhccCCCCEEec
Q 003802 566 SLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFF--SLPSSINQLLKLKILCL 643 (794)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~--~lp~~l~~l~~L~~L~L 643 (794)
-..+...+|++|++|.|.+.. +|..+..++.|+.|.+.+|+++ .||+.++.+.+|+++..
T Consensus 262 ----------------~~~~~W~~lEtLNlSrNQLt~--LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~a 323 (1255)
T KOG0444|consen 262 ----------------MTEGEWENLETLNLSRNQLTV--LPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHA 323 (1255)
T ss_pred ----------------ccHHHHhhhhhhccccchhcc--chHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHh
Confidence 012334567777777777544 7777777777777777777665 77777777777777777
Q ss_pred CCCcCCCCCCCCCccccccccccccccccccccccccCCCCceEEEeCCCCchhhhhhhhh
Q 003802 644 EKCRNLKSLPELPPEIVFVGAEDCTSLETISAFAKLSRSPNIALNFLNCFKLVEDQVSKDN 704 (794)
Q Consensus 644 ~~n~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~n~~~~~~~~~~~~~~~~L~~L~l~~N~ 704 (794)
++|. ++-+|+ .+..|++|+.|.+..|..+ ..|..+.-+|.|..||+..|+
T Consensus 324 anN~-LElVPE--------glcRC~kL~kL~L~~NrLi--TLPeaIHlL~~l~vLDlreNp 373 (1255)
T KOG0444|consen 324 ANNK-LELVPE--------GLCRCVKLQKLKLDHNRLI--TLPEAIHLLPDLKVLDLRENP 373 (1255)
T ss_pred hccc-cccCch--------hhhhhHHHHHhccccccee--echhhhhhcCCcceeeccCCc
Confidence 7665 334443 3466777777777666222 234455566777777776664
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.93 E-value=2.3e-28 Score=249.32 Aligned_cols=338 Identities=20% Similarity=0.198 Sum_probs=266.9
Q ss_pred CCeEEEEEecCCccc-ccchhhhccCCCCcEEEEcCcccCCCcccccc---CcceeeeecCCCCCCCCCC-CCCCceEEE
Q 003802 332 TDAVEAIIVDVPEMT-ELEAKSFSTMSNLRLLEINNLYSSGNLEYLSN---NLRYLKWHEYPFNSLPVSF-RPEKLFKLN 406 (794)
Q Consensus 332 ~~~~~~l~l~~~~~~-~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~---~l~~L~~~~~~~~~l~~~~-~~~~L~~L~ 406 (794)
.+.++.+++++|... ...+.....|+.++.|.|....+. .+|..++ +|.+|.+.+|.+.++.+.. .++.|+.++
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~ 84 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVI 84 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHh
Confidence 356788888888766 456778889999999999877664 3455555 4445555555555555544 678999999
Q ss_pred cCCCCcc--cccccccccccCceeccCCCcCccCCCCCCCCCCCCEEecccccccccccccccCcccccccccccccccc
Q 003802 407 LCNSRIK--YLWKGIKPLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLV 484 (794)
Q Consensus 407 L~~n~i~--~l~~~~~~l~~L~~L~L~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 484 (794)
+++|+++ .+|..+-.+..|..||||+|++...+..+...+++-+|+|++|++.+....-+.+++.|-+||||+|+ ..
T Consensus 85 ~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~Nr-Le 163 (1255)
T KOG0444|consen 85 VRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNR-LE 163 (1255)
T ss_pred hhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccch-hh
Confidence 9999887 67888889999999999999888887778888999999999987654444567789999999999976 66
Q ss_pred ccccccCCCCCccEEEecCCCCCCCCCccccCCCCCcEEEccCccCc--ccCcccccCCCCCEEEcCCCCCCCCcccccc
Q 003802 485 SFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIR--QIPPSIVQLVNLKIFSLHGCKGQPPKILSSN 562 (794)
Q Consensus 485 ~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~--~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 562 (794)
.+|+.+..+..|++|+|++|.+...--..+..+++|+.|.+++++-+ .+|.++..+.+|+.++++.|.....
T Consensus 164 ~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~v------ 237 (1255)
T KOG0444|consen 164 MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIV------ 237 (1255)
T ss_pred hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcc------
Confidence 78888999999999999998876544445667788999999998754 7899999999999999999873211
Q ss_pred chhccccCCCCCCCccccCCCCCCCCCCCEEecCCCCCccCCCCccccCCCCCCeEeCCCCCCccCchhhhccCCCCEEe
Q 003802 563 FFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLPSSINQLLKLKILC 642 (794)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~ 642 (794)
...+-.+++|+.|+||+|.+.. +....+.-.+|++|++|.|+++.+|..+..+++|+.|.
T Consensus 238 ------------------Pecly~l~~LrrLNLS~N~ite--L~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy 297 (1255)
T KOG0444|consen 238 ------------------PECLYKLRNLRRLNLSGNKITE--LNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLY 297 (1255)
T ss_pred ------------------hHHHhhhhhhheeccCcCceee--eeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHH
Confidence 1236678899999999999654 55566777899999999999999999999999999999
Q ss_pred cCCCcCCCCCCCCCccccccccccccccccccccccccCCCCceEEEeCCCCchhhhhhhhhHH
Q 003802 643 LEKCRNLKSLPELPPEIVFVGAEDCTSLETISAFAKLSRSPNIALNFLNCFKLVEDQVSKDNLA 706 (794)
Q Consensus 643 L~~n~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~n~~~~~~~~~~~~~~~~L~~L~l~~N~l~ 706 (794)
+.+|++. +..+|+. |..+..|+.+...+| .....|..+..|++|+.|.+++|.+.
T Consensus 298 ~n~NkL~--FeGiPSG-----IGKL~~Levf~aanN--~LElVPEglcRC~kL~kL~L~~NrLi 352 (1255)
T KOG0444|consen 298 ANNNKLT--FEGIPSG-----IGKLIQLEVFHAANN--KLELVPEGLCRCVKLQKLKLDHNRLI 352 (1255)
T ss_pred hccCccc--ccCCccc-----hhhhhhhHHHHhhcc--ccccCchhhhhhHHHHHhccccccee
Confidence 9999865 3344443 355567777766655 33556778999999999999999986
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.90 E-value=1.2e-26 Score=225.31 Aligned_cols=343 Identities=22% Similarity=0.274 Sum_probs=212.6
Q ss_pred hccCCCCcEEEEcCcccCCCcccccc--CcceeeeecCCCCCCCCCC-CCCCceEEEcCCCCcccccccccccccCceec
Q 003802 353 FSTMSNLRLLEINNLYSSGNLEYLSN--NLRYLKWHEYPFNSLPVSF-RPEKLFKLNLCNSRIKYLWKGIKPLKELKFMN 429 (794)
Q Consensus 353 ~~~~~~L~~L~l~~n~~~~~~~~~~~--~l~~L~~~~~~~~~l~~~~-~~~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~ 429 (794)
.....+|+.|++++|.+....+.... .+..|+..++.+.++|+++ .+.+|..+++.+|.++.+|+..-+++.|++||
T Consensus 110 i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld 189 (565)
T KOG0472|consen 110 IGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLD 189 (565)
T ss_pred HhhhhhhhhhhccccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcc
Confidence 34445555555555555443333222 3444555555555665554 45566666666666666666655566677777
Q ss_pred cCCCcCccCCCCCCCCCCCCEEecccccccccccccccCccccccccccccccccccccccC-CCCCccEEEecCCCCCC
Q 003802 430 LSHSCNLIRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVC-LMKSLKILCLCGCLKLE 508 (794)
Q Consensus 430 L~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~l~~L~~L~L~~~~~~~ 508 (794)
...|-+.+.+|+++.+.+|+-|++..|.+ ..+| .|.+|..|++|.++.|. +..+|...+ ++++|..|||+.|++ .
T Consensus 190 ~~~N~L~tlP~~lg~l~~L~~LyL~~Nki-~~lP-ef~gcs~L~Elh~g~N~-i~~lpae~~~~L~~l~vLDLRdNkl-k 265 (565)
T KOG0472|consen 190 CNSNLLETLPPELGGLESLELLYLRRNKI-RFLP-EFPGCSLLKELHVGENQ-IEMLPAEHLKHLNSLLVLDLRDNKL-K 265 (565)
T ss_pred cchhhhhcCChhhcchhhhHHHHhhhccc-ccCC-CCCccHHHHHHHhcccH-HHhhHHHHhcccccceeeecccccc-c
Confidence 76666666666677777777777777653 3455 67777777777777654 455665554 788999999998765 4
Q ss_pred CCCccccCCCCCcEEEccCccCcccCcccccCCCCCEEEcCCCCCC-CCcccccc------chhcccc---CCCCCCCc-
Q 003802 509 KLPQDLGEVECLEELDVGGTAIRQIPPSIVQLVNLKIFSLHGCKGQ-PPKILSSN------FFLSLLL---PNKNSDSM- 577 (794)
Q Consensus 509 ~~~~~~~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~~-~~~~~~~~------~~~~~~~---~~~~~~~~- 577 (794)
+.|..+.-+.+|+.||+|+|.++.+|..++++ +|+.|-+.||+.. +...+-.. +.++... -.++...+
T Consensus 266 e~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~ 344 (565)
T KOG0472|consen 266 EVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGT 344 (565)
T ss_pred cCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccc
Confidence 57888888899999999999999999999999 8999999888711 10000000 0000000 00000000
Q ss_pred -------cccCCCCCCCCCC--------------------------CEEecCCCCCcc----------------------
Q 003802 578 -------CLSFPRFTGLSSL--------------------------QTLDLSDCNLLE---------------------- 602 (794)
Q Consensus 578 -------~~~~~~~~~~~~L--------------------------~~L~l~~n~~~~---------------------- 602 (794)
...++......+. ...+++.|.+.+
T Consensus 345 e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~i 424 (565)
T KOG0472|consen 345 ETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKI 424 (565)
T ss_pred cccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCcc
Confidence 0001111111222 233444443211
Q ss_pred CCCCccccCCCCCCeEeCCCCCCccCchhhhccCCCCEEecCCCcCCCCCCCCCc----------------ccccc---c
Q 003802 603 GAIPSDIGSLFSLEAIDLSGNNFFSLPSSINQLLKLKILCLEKCRNLKSLPELPP----------------EIVFV---G 663 (794)
Q Consensus 603 ~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~~~~~~----------------~L~~L---~ 663 (794)
+.+|..++.+++|..|+|++|-+.++|..++.+..|+.|+++.|+ ++.+|. .+..+ .
T Consensus 425 sfv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~Nr----Fr~lP~~~y~lq~lEtllas~nqi~~vd~~~ 500 (565)
T KOG0472|consen 425 SFVPLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNR----FRMLPECLYELQTLETLLASNNQIGSVDPSG 500 (565)
T ss_pred ccchHHHHhhhcceeeecccchhhhcchhhhhhhhhheecccccc----cccchHHHhhHHHHHHHHhccccccccChHH
Confidence 234555677889999999999999999999999999999999996 444331 11111 1
Q ss_pred cccccccccccccccccCCCCceEEEeCCCCchhhhhhhhhHH
Q 003802 664 AEDCTSLETISAFAKLSRSPNIALNFLNCFKLVEDQVSKDNLA 706 (794)
Q Consensus 664 l~~~~~L~~l~~~~n~~~~~~~~~~~~~~~~L~~L~l~~N~l~ 706 (794)
+.++.+|+.|++..| ....+|..+++|.+|+.|++.+|+|.
T Consensus 501 l~nm~nL~tLDL~nN--dlq~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 501 LKNMRNLTTLDLQNN--DLQQIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred hhhhhhcceeccCCC--chhhCChhhccccceeEEEecCCccC
Confidence 345677778877766 23456778888888888888888875
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.87 E-value=4.4e-21 Score=231.16 Aligned_cols=318 Identities=24% Similarity=0.338 Sum_probs=226.7
Q ss_pred ccCcceeeeecCCC-------CCCCCCC--CCCCceEEEcCCCCcccccccccccccCceeccCCCcCccCCCCCCCCCC
Q 003802 377 SNNLRYLKWHEYPF-------NSLPVSF--RPEKLFKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLIRTPDFTGVPN 447 (794)
Q Consensus 377 ~~~l~~L~~~~~~~-------~~l~~~~--~~~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~n~~~~~~~~~~~l~~ 447 (794)
+.+|+.|.+..... -.+|..+ .+.+|+.|++.++.++.+|..+ ...+|+.|++++|.+...+..+..+++
T Consensus 557 m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~ 635 (1153)
T PLN03210 557 MRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTG 635 (1153)
T ss_pred CccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccccccCCC
Confidence 45677776654422 1345554 3568999999999999999887 578999999999987776666889999
Q ss_pred CCEEecccccccccccccccCccccccccccccccccccccccCCCCCccEEEecCCCCCCCCCccccCCCCCcEEEccC
Q 003802 448 LERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGG 527 (794)
Q Consensus 448 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~ 527 (794)
|+.|+|++|...+.+| .++.+++|++|++++|.....+|..+.++++|+.|++++|...+.+|..+ ++++|+.|++++
T Consensus 636 Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsg 713 (1153)
T PLN03210 636 LRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSG 713 (1153)
T ss_pred CCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCC
Confidence 9999999988788887 58889999999999999999999999999999999999999888898766 799999999999
Q ss_pred cc-CcccCcccccCCCCCEEEcCCCC-CCCCccccccchhccccCCCCC--C-CccccCC--CCCCCCCCCEEecCCCCC
Q 003802 528 TA-IRQIPPSIVQLVNLKIFSLHGCK-GQPPKILSSNFFLSLLLPNKNS--D-SMCLSFP--RFTGLSSLQTLDLSDCNL 600 (794)
Q Consensus 528 ~~-l~~l~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~--~~~~~~~L~~L~l~~n~~ 600 (794)
|. +..+|.. .++|+.|++++|. ...|..+....+..+.+..... . .....+. ....+++|+.|++++|.
T Consensus 714 c~~L~~~p~~---~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~- 789 (1153)
T PLN03210 714 CSRLKSFPDI---STNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIP- 789 (1153)
T ss_pred CCCccccccc---cCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCC-
Confidence 85 3455542 5689999999988 3334332111111111111000 0 0000011 12235789999999987
Q ss_pred ccCCCCccccCCCCCCeEeCCCC-CCccCchhhhccCCCCEEecCCCcCCCCCCCCCcccccccc---------------
Q 003802 601 LEGAIPSDIGSLFSLEAIDLSGN-NFFSLPSSINQLLKLKILCLEKCRNLKSLPELPPEIVFVGA--------------- 664 (794)
Q Consensus 601 ~~~~~~~~~~~l~~L~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~n~~~~~~~~~~~~L~~L~l--------------- 664 (794)
....+|..++++++|+.|++++| .+..+|..+ ++++|+.|+|++|..++.+|..+.+|+.|++
T Consensus 790 ~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~l 868 (1153)
T PLN03210 790 SLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKF 868 (1153)
T ss_pred CccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccccccCEeECCCCCCccChHHHhcC
Confidence 34458888999999999999988 577888665 7889999999999888777765555555444
Q ss_pred --------ccccccccccccccccCCCCceEEEeCCCCchhhhhhhh
Q 003802 665 --------EDCTSLETISAFAKLSRSPNIALNFLNCFKLVEDQVSKD 703 (794)
Q Consensus 665 --------~~~~~L~~l~~~~n~~~~~~~~~~~~~~~~L~~L~l~~N 703 (794)
.+|++|+.+..... .........+.+|++|+.+.+..+
T Consensus 869 ~~L~~L~L~~C~~L~~l~~~~~-~L~~L~~L~l~~C~~L~~~~l~~~ 914 (1153)
T PLN03210 869 SNLSFLDMNGCNNLQRVSLNIS-KLKHLETVDFSDCGALTEASWNGS 914 (1153)
T ss_pred CCCCEEECCCCCCcCccCcccc-cccCCCeeecCCCcccccccCCCC
Confidence 44444444433211 222334456667777776655443
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.86 E-value=2.2e-24 Score=209.75 Aligned_cols=230 Identities=20% Similarity=0.227 Sum_probs=178.1
Q ss_pred hccCCCeEEEEEecCCcccccchhhhccCCCCcEEEEcCcccCCCccccc--cCcceeeeecCCCCCCCCCC-CCCCceE
Q 003802 328 KYMGTDAVEAIIVDVPEMTELEAKSFSTMSNLRLLEINNLYSSGNLEYLS--NNLRYLKWHEYPFNSLPVSF-RPEKLFK 404 (794)
Q Consensus 328 ~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~--~~l~~L~~~~~~~~~l~~~~-~~~~L~~ 404 (794)
+......+..+.+..|.....+ .+++.+..++.++.+.|.+....+... ..++.|+++.+.+..++..+ .+..|+.
T Consensus 63 dl~nL~~l~vl~~~~n~l~~lp-~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~d 141 (565)
T KOG0472|consen 63 DLKNLACLTVLNVHDNKLSQLP-AAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLED 141 (565)
T ss_pred hhhcccceeEEEeccchhhhCC-HHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhh
Confidence 3445566777777777766655 456777788888888888765544332 35666777777777777766 6778888
Q ss_pred EEcCCCCcccccccccccccCceeccCCCcCccCCCCCCCCCCCCEEecccccccccccccccCcccccccccccccccc
Q 003802 405 LNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLV 484 (794)
Q Consensus 405 L~L~~n~i~~l~~~~~~l~~L~~L~L~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 484 (794)
++..+|+++++|.++..+.+|..+++.+|++...++..-.++.|++||...| ..+.+|..++.+.+|..|++..|. +.
T Consensus 142 l~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N-~L~tlP~~lg~l~~L~~LyL~~Nk-i~ 219 (565)
T KOG0472|consen 142 LDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSN-LLETLPPELGGLESLELLYLRRNK-IR 219 (565)
T ss_pred hhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchh-hhhcCChhhcchhhhHHHHhhhcc-cc
Confidence 9999999999999988999999999999988888887555889999998885 467888899999999999999876 45
Q ss_pred ccccccCCCCCccEEEecCCCCCCCCCcc-ccCCCCCcEEEccCccCcccCcccccCCCCCEEEcCCCC-CCCCcccccc
Q 003802 485 SFPKNVCLMKSLKILCLCGCLKLEKLPQD-LGEVECLEELDVGGTAIRQIPPSIVQLVNLKIFSLHGCK-GQPPKILSSN 562 (794)
Q Consensus 485 ~~~~~~~~l~~L~~L~L~~~~~~~~~~~~-~~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~ 562 (794)
.+| .|..+..|..|++..|.+. .+|.. ..++++|..||+.+|+++++|..+..+.+|..|++++|. ...|..++..
T Consensus 220 ~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl 297 (565)
T KOG0472|consen 220 FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISSLPYSLGNL 297 (565)
T ss_pred cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCccccCCcccccc
Confidence 667 6888899999998876554 45555 458999999999999999999999999999999999998 3444333333
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.85 E-value=1.8e-23 Score=224.26 Aligned_cols=374 Identities=21% Similarity=0.142 Sum_probs=219.3
Q ss_pred EEEEEecCCcccccchhhhccCCCCcEEEEcCcccCCCcc--ccccCcceeeeecCCCCCCCCCC-CCCCceEEEcCCCC
Q 003802 335 VEAIIVDVPEMTELEAKSFSTMSNLRLLEINNLYSSGNLE--YLSNNLRYLKWHEYPFNSLPVSF-RPEKLFKLNLCNSR 411 (794)
Q Consensus 335 ~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~--~~~~~l~~L~~~~~~~~~l~~~~-~~~~L~~L~L~~n~ 411 (794)
+..+.+..|.....|.++.++.-+|+.|++++|.+..... ..+.+|+.|.++++.+.+.|... .+.+|++|.|.+|.
T Consensus 23 ~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~ 102 (1081)
T KOG0618|consen 23 LQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNR 102 (1081)
T ss_pred HHhhhccccccccCchHHhhheeeeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccch
Confidence 5566666676666667777777779999999998764322 34568888888888888888665 78899999999999
Q ss_pred cccccccccccccCceeccCCCcCccCCCCCCCCCCC-------------------CEEecccccccccccccccCcccc
Q 003802 412 IKYLWKGIKPLKELKFMNLSHSCNLIRTPDFTGVPNL-------------------ERLNLEGCTRLLEVHQSVGTLKRL 472 (794)
Q Consensus 412 i~~l~~~~~~l~~L~~L~L~~n~~~~~~~~~~~l~~L-------------------~~L~l~~~~~~~~~~~~~~~l~~L 472 (794)
+..+|.++..+++|++|++++|.+...+.-+..++.+ +.+++..|.+.+.++..+..+.+
T Consensus 103 l~~lP~~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~- 181 (1081)
T KOG0618|consen 103 LQSLPASISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH- 181 (1081)
T ss_pred hhcCchhHHhhhcccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe-
Confidence 9999999999999999999999887766544444444 44445555555555555555555
Q ss_pred cccccccccccccccccc-----------------CCCCCccEEEecCCCCCCCCCccccCCCCCcEEEccCccCcccCc
Q 003802 473 ILLNLKDCRNLVSFPKNV-----------------CLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPP 535 (794)
Q Consensus 473 ~~L~l~~n~~~~~~~~~~-----------------~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~ 535 (794)
.|+|++|.+....-..+ -.-++|+.|+.+.|.+....+ -....+|+.++++.|+++.+|.
T Consensus 182 -~ldLr~N~~~~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~--~p~p~nl~~~dis~n~l~~lp~ 258 (1081)
T KOG0618|consen 182 -QLDLRYNEMEVLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDV--HPVPLNLQYLDISHNNLSNLPE 258 (1081)
T ss_pred -eeecccchhhhhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeecc--ccccccceeeecchhhhhcchH
Confidence 57777776551100000 012344444444444442211 1122456666666666666666
Q ss_pred ccccCCCCCEEEcCCCC-CCCCccccccchhccccCCCCCCCccccCCCCCCCCC-------------------------
Q 003802 536 SIVQLVNLKIFSLHGCK-GQPPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSS------------------------- 589 (794)
Q Consensus 536 ~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------- 589 (794)
+++.+.+|+.+...+|. ...|..+.....+..+....+...- ..+...+++.
T Consensus 259 wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~y--ip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~ 336 (1081)
T KOG0618|consen 259 WIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEY--IPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNAS 336 (1081)
T ss_pred HHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhh--CCCcccccceeeeeeehhccccccchHHHhhhhHH
Confidence 66666666666666655 2222222222111111111111100 0011222333
Q ss_pred ------------------------CCEEecCCCCCccCCCCccccCCCCCCeEeCCCCCCccCchh-hhccCCCCEEecC
Q 003802 590 ------------------------LQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLPSS-INQLLKLKILCLE 644 (794)
Q Consensus 590 ------------------------L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~-l~~l~~L~~L~L~ 644 (794)
|+.|.+.+|. +++.....+.++.+|+.|+|++|++.++|.. +.+++.|++|+||
T Consensus 337 l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~-Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LS 415 (1081)
T KOG0618|consen 337 LNTLNVSSNKLSTLPSYEENNHAALQELYLANNH-LTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLS 415 (1081)
T ss_pred HHHHhhhhccccccccccchhhHHHHHHHHhcCc-ccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcc
Confidence 4444444444 3333333455666777777777777777754 4667777777777
Q ss_pred CCcCCCCCCCCCccccccccccccccccccccccccCCCCceEEEeCCCCchhhhhhhhhHHHHHHHHHHhhhccccccC
Q 003802 645 KCRNLKSLPELPPEIVFVGAEDCTSLETISAFAKLSRSPNIALNFLNCFKLVEDQVSKDNLAVTLMKQWLLSYHSLVAWT 724 (794)
Q Consensus 645 ~n~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~n~~~~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~~~~~l~~~~ 724 (794)
+|+ ++.+|. .+.+|+.|++|...+|... ..| .+..++.|+.+|+|.|+++........+. ++++.++
T Consensus 416 GNk-L~~Lp~--------tva~~~~L~tL~ahsN~l~--~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLd 482 (1081)
T KOG0618|consen 416 GNK-LTTLPD--------TVANLGRLHTLRAHSNQLL--SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLD 482 (1081)
T ss_pred cch-hhhhhH--------HHHhhhhhHHHhhcCCcee--ech-hhhhcCcceEEecccchhhhhhhhhhCCC-cccceee
Confidence 776 333332 3455677777766655221 122 67777777778888777765444333322 4555555
Q ss_pred cccc
Q 003802 725 DSTR 728 (794)
Q Consensus 725 ~~~~ 728 (794)
.+.|
T Consensus 483 lSGN 486 (1081)
T KOG0618|consen 483 LSGN 486 (1081)
T ss_pred ccCC
Confidence 5444
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.81 E-value=4.6e-22 Score=213.50 Aligned_cols=348 Identities=21% Similarity=0.216 Sum_probs=220.0
Q ss_pred eEEEEEecCCcccccchhhhccCCCCcEEEEcCcccCCCcc--ccccCcceeeeecCCCCCCCCCC-CCCCceEEEcCCC
Q 003802 334 AVEAIIVDVPEMTELEAKSFSTMSNLRLLEINNLYSSGNLE--YLSNNLRYLKWHEYPFNSLPVSF-RPEKLFKLNLCNS 410 (794)
Q Consensus 334 ~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~--~~~~~l~~L~~~~~~~~~l~~~~-~~~~L~~L~L~~n 410 (794)
.++++++++|.+...+ ..+..+++|+.|+++.|.+..... ....++++|.+.++....+|..+ .+.+|++|+++.|
T Consensus 46 ~L~~l~lsnn~~~~fp-~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N 124 (1081)
T KOG0618|consen 46 KLKSLDLSNNQISSFP-IQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFN 124 (1081)
T ss_pred eeEEeeccccccccCC-chhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchhhcCchhHHhhhcccccccchh
Confidence 3788888888666554 455677889999999987765443 23347788888888888888777 6889999999999
Q ss_pred CcccccccccccccCceeccCCC-------------------cCccCCCCCCCCCCCC-EEecccccccccccccccCc-
Q 003802 411 RIKYLWKGIKPLKELKFMNLSHS-------------------CNLIRTPDFTGVPNLE-RLNLEGCTRLLEVHQSVGTL- 469 (794)
Q Consensus 411 ~i~~l~~~~~~l~~L~~L~L~~n-------------------~~~~~~~~~~~l~~L~-~L~l~~~~~~~~~~~~~~~l- 469 (794)
.+..+|..+..+..+..+..++| .+...... ...+|+ .|+|++|... .. .+..+
T Consensus 125 ~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~--~i~~l~~~ldLr~N~~~-~~--dls~~~ 199 (1081)
T KOG0618|consen 125 HFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLI--DIYNLTHQLDLRYNEME-VL--DLSNLA 199 (1081)
T ss_pred ccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhc--chhhhheeeecccchhh-hh--hhhhcc
Confidence 99988877777777666666666 22222111 223344 4888887655 11 12222
Q ss_pred -------------------cccccccccccccccccccccCCCCCccEEEecCCCCCCCCCccccCCCCCcEEEccC---
Q 003802 470 -------------------KRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGG--- 527 (794)
Q Consensus 470 -------------------~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~--- 527 (794)
++|+.|+.++|.+....+. ....+|++++++.|.+.. +|++++.+.+|+.++..+
T Consensus 200 ~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~~-lp~wi~~~~nle~l~~n~N~l 276 (1081)
T KOG0618|consen 200 NLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLSN-LPEWIGACANLEALNANHNRL 276 (1081)
T ss_pred chhhhhhhhcccceEEecCcchheeeeccCcceeeccc--cccccceeeecchhhhhc-chHHHHhcccceEecccchhH
Confidence 2333344444433321111 123445555555544433 335555555555555554
Q ss_pred --------------------ccCcccCcccccCCCCCEEEcCCCC-CCCCccccccc-----------------------
Q 003802 528 --------------------TAIRQIPPSIVQLVNLKIFSLHGCK-GQPPKILSSNF----------------------- 563 (794)
Q Consensus 528 --------------------~~l~~l~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~----------------------- 563 (794)
|.+..+|.....+++|++|++..|. ...|..+....
T Consensus 277 ~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~ 356 (1081)
T KOG0618|consen 277 VALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEEN 356 (1081)
T ss_pred HhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccch
Confidence 4555556666778888999988877 33332111100
Q ss_pred ---hhccccCCCCCCCccccCCCCCCCCCCCEEecCCCCCccCCCCc-cccCCCCCCeEeCCCCCCccCchhhhccCCCC
Q 003802 564 ---FLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPS-DIGSLFSLEAIDLSGNNFFSLPSSINQLLKLK 639 (794)
Q Consensus 564 ---~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~-~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~ 639 (794)
.+..+.+.+|.. ....++.+.++++|+.|+|++|.+-+ +|. .+.++..|++|+||+|+++.+|..+.+++.|+
T Consensus 357 ~~~~Lq~LylanN~L-td~c~p~l~~~~hLKVLhLsyNrL~~--fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~ 433 (1081)
T KOG0618|consen 357 NHAALQELYLANNHL-TDSCFPVLVNFKHLKVLHLSYNRLNS--FPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLH 433 (1081)
T ss_pred hhHHHHHHHHhcCcc-cccchhhhccccceeeeeeccccccc--CCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhH
Confidence 011112222222 24556778999999999999998533 555 46889999999999999999999999999999
Q ss_pred EEecCCCcCCCCCCCCCccccccccccccccccccccccccCCCCceEEEeCCCCchhhhhhhhh
Q 003802 640 ILCLEKCRNLKSLPELPPEIVFVGAEDCTSLETISAFAKLSRSPNIALNFLNCFKLVEDQVSKDN 704 (794)
Q Consensus 640 ~L~L~~n~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~n~~~~~~~~~~~~~~~~L~~L~l~~N~ 704 (794)
+|...+|.+. .+|+ +...+.|+.+|++.|.......+.. .--|+|++||+++|.
T Consensus 434 tL~ahsN~l~-~fPe---------~~~l~qL~~lDlS~N~L~~~~l~~~-~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 434 TLRAHSNQLL-SFPE---------LAQLPQLKVLDLSCNNLSEVTLPEA-LPSPNLKYLDLSGNT 487 (1081)
T ss_pred HHhhcCCcee-echh---------hhhcCcceEEecccchhhhhhhhhh-CCCcccceeeccCCc
Confidence 9999998743 4553 3445666666666652221112222 222899999999997
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.79 E-value=1.5e-18 Score=193.43 Aligned_cols=260 Identities=20% Similarity=0.134 Sum_probs=200.2
Q ss_pred EEEEEecCCcccccchhhhccCCCCcEEEEcCcccCCCccccccCcceeeeecCCCCCCCCCCCCCCceEEEcCCCCccc
Q 003802 335 VEAIIVDVPEMTELEAKSFSTMSNLRLLEINNLYSSGNLEYLSNNLRYLKWHEYPFNSLPVSFRPEKLFKLNLCNSRIKY 414 (794)
Q Consensus 335 ~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~~~~~~~~l~~~~~~~~L~~L~L~~n~i~~ 414 (794)
-..+.++.+.+..+|.... ++|+.|++.+|.++. +|..+.+|++|++.+|.++.+|.. +++|+.|++++|.++.
T Consensus 203 ~~~LdLs~~~LtsLP~~l~---~~L~~L~L~~N~Lt~-LP~lp~~Lk~LdLs~N~LtsLP~l--p~sL~~L~Ls~N~L~~ 276 (788)
T PRK15387 203 NAVLNVGESGLTTLPDCLP---AHITTLVIPDNNLTS-LPALPPELRTLEVSGNQLTSLPVL--PPGLLELSIFSNPLTH 276 (788)
T ss_pred CcEEEcCCCCCCcCCcchh---cCCCEEEccCCcCCC-CCCCCCCCcEEEecCCccCcccCc--ccccceeeccCCchhh
Confidence 3457888888877765332 479999999998876 566778999999999999988864 4699999999999998
Q ss_pred ccccccccccCceeccCCCcCccCCCCCCCCCCCCEEecccccccccccccccCccccccccccccccccccccccCCCC
Q 003802 415 LWKGIKPLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMK 494 (794)
Q Consensus 415 l~~~~~~l~~L~~L~L~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~ 494 (794)
+|..+ .+|+.|++++|.+...+. ..++|+.|++++|.+.+ +|.. ..+|+.|++++|.+. .+|. ...
T Consensus 277 Lp~lp---~~L~~L~Ls~N~Lt~LP~---~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~-~LP~---lp~ 342 (788)
T PRK15387 277 LPALP---SGLCKLWIFGNQLTSLPV---LPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLT-SLPT---LPS 342 (788)
T ss_pred hhhch---hhcCEEECcCCccccccc---cccccceeECCCCcccc-CCCC---cccccccccccCccc-cccc---ccc
Confidence 88643 578899999998765543 24789999999987654 4432 246788899998754 4664 235
Q ss_pred CccEEEecCCCCCCCCCccccCCCCCcEEEccCccCcccCcccccCCCCCEEEcCCCCCCCCccccccchhccccCCCCC
Q 003802 495 SLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPPSIVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNS 574 (794)
Q Consensus 495 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 574 (794)
+|++|+|++|.+.+ +|.. ..+|+.|++++|.++.+|.. ..+|+.|++++|...
T Consensus 343 ~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~LP~l---~~~L~~LdLs~N~Lt-------------------- 395 (788)
T PRK15387 343 GLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLT-------------------- 395 (788)
T ss_pred ccceEecCCCccCC-CCCC---CcccceehhhccccccCccc---ccccceEEecCCccc--------------------
Confidence 89999999988775 5542 35788899999999988864 357899999988722
Q ss_pred CCccccCCCCCCCCCCCEEecCCCCCccCCCCccccCCCCCCeEeCCCCCCccCchhhhccCCCCEEecCCCcCCCCCC
Q 003802 575 DSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLPSSINQLLKLKILCLEKCRNLKSLP 653 (794)
Q Consensus 575 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~~ 653 (794)
.++. ..++|+.|++++|.+.+ +|.. ..+|+.|++++|+++.+|..+.++++|+.|+|++|++....+
T Consensus 396 -----~LP~--l~s~L~~LdLS~N~Lss--IP~l---~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls~~~~ 462 (788)
T PRK15387 396 -----SLPV--LPSELKELMVSGNRLTS--LPML---PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTL 462 (788)
T ss_pred -----CCCC--cccCCCEEEccCCcCCC--CCcc---hhhhhhhhhccCcccccChHHhhccCCCeEECCCCCCCchHH
Confidence 1111 13579999999999543 6753 357899999999999999999999999999999999765443
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.78 E-value=1.6e-18 Score=193.14 Aligned_cols=243 Identities=19% Similarity=0.167 Sum_probs=120.9
Q ss_pred CceEEEcCCCCcccccccccccccCceeccCCCcCccCCCCCCCCCCCCEEecccccccccccccccCcccccccccccc
Q 003802 401 KLFKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDC 480 (794)
Q Consensus 401 ~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n 480 (794)
+|+.|++++|+++.+|.. +++|++|++++|.+...+ .+ .++|+.|++++|.+. .+|.. ..+|+.|++++|
T Consensus 223 ~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP-~l--p~sL~~L~Ls~N~L~-~Lp~l---p~~L~~L~Ls~N 292 (788)
T PRK15387 223 HITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSLP-VL--PPGLLELSIFSNPLT-HLPAL---PSGLCKLWIFGN 292 (788)
T ss_pred CCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCccc-Cc--ccccceeeccCCchh-hhhhc---hhhcCEEECcCC
Confidence 444444444444444431 344555555554443322 11 234555555554432 22221 134445555555
Q ss_pred ccccccccccCCCCCccEEEecCCCCCCCCCccccCCCCCcEEEccCccCcccCcccccCCCCCEEEcCCCCCCCCcccc
Q 003802 481 RNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPPSIVQLVNLKIFSLHGCKGQPPKILS 560 (794)
Q Consensus 481 ~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~ 560 (794)
.+. .+|. .+++|+.|++++|.+.+ +|.. ..+|+.|++++|.++.+|.. ..+|+.|++++|...
T Consensus 293 ~Lt-~LP~---~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~LP~l---p~~Lq~LdLS~N~Ls------ 355 (788)
T PRK15387 293 QLT-SLPV---LPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTSLPTL---PSGLQELSVSDNQLA------ 355 (788)
T ss_pred ccc-cccc---cccccceeECCCCcccc-CCCC---cccccccccccCcccccccc---ccccceEecCCCccC------
Confidence 432 3333 13455555555554443 2221 12355555666666555531 235566666655411
Q ss_pred ccchhccccCCCCCCCccccCCCCCCCCCCCEEecCCCCCccCCCCccccCCCCCCeEeCCCCCCccCchhhhccCCCCE
Q 003802 561 SNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLPSSINQLLKLKI 640 (794)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~ 640 (794)
.++.+ .++|+.|++++|.+.. +|.. ..+|+.|++++|.++.+|.. .++|+.
T Consensus 356 -------------------~LP~l--p~~L~~L~Ls~N~L~~--LP~l---~~~L~~LdLs~N~Lt~LP~l---~s~L~~ 406 (788)
T PRK15387 356 -------------------SLPTL--PSELYKLWAYNNRLTS--LPAL---PSGLKELIVSGNRLTSLPVL---PSELKE 406 (788)
T ss_pred -------------------CCCCC--Ccccceehhhcccccc--Cccc---ccccceEEecCCcccCCCCc---ccCCCE
Confidence 01111 2355666666666332 4432 24577777777777766642 356777
Q ss_pred EecCCCcCCCCCCCCCccccccccccccccccccccccccCCCCceEEEeCCCCchhhhhhhhhHHHHHHHHH
Q 003802 641 LCLEKCRNLKSLPELPPEIVFVGAEDCTSLETISAFAKLSRSPNIALNFLNCFKLVEDQVSKDNLAVTLMKQW 713 (794)
Q Consensus 641 L~L~~n~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~n~~~~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~ 713 (794)
|++++|++ +.+|..|.+| +.|++++| .+. .+|..+.++++|+.|++++|++++..+..+
T Consensus 407 LdLS~N~L-ssIP~l~~~L-----------~~L~Ls~N-qLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 407 LMVSGNRL-TSLPMLPSGL-----------LSLSVYRN-QLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred EEccCCcC-CCCCcchhhh-----------hhhhhccC-ccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 77777763 3355444333 33334333 111 234456678888888999999887665544
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.77 E-value=1.5e-18 Score=194.94 Aligned_cols=225 Identities=19% Similarity=0.237 Sum_probs=119.9
Q ss_pred CcceeeeecCCCCCCCCCCCCCCceEEEcCCCCcccccccccccccCceeccCCCcCccCCCCCCCCCCCCEEecccccc
Q 003802 379 NLRYLKWHEYPFNSLPVSFRPEKLFKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCTR 458 (794)
Q Consensus 379 ~l~~L~~~~~~~~~l~~~~~~~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~n~~~~~~~~~~~l~~L~~L~l~~~~~ 458 (794)
+++.|++.+|.+..+|..+. .+|++|++++|.++.+|..+. ++|+.|+|++|.+...+..+. .+|+.|++++|.+
T Consensus 200 ~L~~L~Ls~N~LtsLP~~l~-~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~L 274 (754)
T PRK15370 200 QITTLILDNNELKSLPENLQ-GNIKTLYANSNQLTSIPATLP--DTIQEMELSINRITELPERLP--SALQSLDLFHNKI 274 (754)
T ss_pred CCcEEEecCCCCCcCChhhc-cCCCEEECCCCccccCChhhh--ccccEEECcCCccCcCChhHh--CCCCEEECcCCcc
Confidence 34444444444444443322 245555555555555554332 245555555554443322221 2455555555443
Q ss_pred cccccccccCccccccccccccccccccccccCCCCCccEEEecCCCCCCCCCccccCCCCCcEEEccCccCcccCcccc
Q 003802 459 LLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPPSIV 538 (794)
Q Consensus 459 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~l~ 538 (794)
. .+|..+. ++|++|++++|.+. .+|..+. ++|+.|++++|.+.. +|..+ .++|+.|++++|.++.+|..+.
T Consensus 275 ~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~Lt~LP~~l~ 345 (754)
T PRK15370 275 S-CLPENLP--EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSNSLTA-LPETL--PPGLKTLEAGENALTSLPASLP 345 (754)
T ss_pred C-ccccccC--CCCcEEECCCCccc-cCcccch--hhHHHHHhcCCcccc-CCccc--cccceeccccCCccccCChhhc
Confidence 3 3443332 35555566555433 3343221 355666666655543 33322 2466666666666666665442
Q ss_pred cCCCCCEEEcCCCCCCCCccccccchhccccCCCCCCCccccCCCCCCCCCCCEEecCCCCCccCCCCccccCCCCCCeE
Q 003802 539 QLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAI 618 (794)
Q Consensus 539 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L 618 (794)
++|+.|++++|.... ++. .-.++|+.|+|++|.+.. +|..+. .+|+.|
T Consensus 346 --~sL~~L~Ls~N~L~~-------------------------LP~-~lp~~L~~LdLs~N~Lt~--LP~~l~--~sL~~L 393 (754)
T PRK15370 346 --PELQVLDVSKNQITV-------------------------LPE-TLPPTITTLDVSRNALTN--LPENLP--AALQIM 393 (754)
T ss_pred --CcccEEECCCCCCCc-------------------------CCh-hhcCCcCEEECCCCcCCC--CCHhHH--HHHHHH
Confidence 567777777665210 010 012468888888887543 665543 368888
Q ss_pred eCCCCCCccCchhh----hccCCCCEEecCCCcCC
Q 003802 619 DLSGNNFFSLPSSI----NQLLKLKILCLEKCRNL 649 (794)
Q Consensus 619 ~L~~n~l~~lp~~l----~~l~~L~~L~L~~n~~~ 649 (794)
++++|+++.+|..+ +.++++..|++.+|++.
T Consensus 394 dLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 394 QASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred hhccCCcccCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 88888888777654 34577888888888743
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.75 E-value=2.4e-18 Score=193.23 Aligned_cols=221 Identities=19% Similarity=0.278 Sum_probs=127.9
Q ss_pred CcceeeeecCCCCCCCCCCCCCCceEEEcCCCCcccccccccccccCceeccCCCcCccCCCCCCCCCCCCEEecccccc
Q 003802 379 NLRYLKWHEYPFNSLPVSFRPEKLFKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCTR 458 (794)
Q Consensus 379 ~l~~L~~~~~~~~~l~~~~~~~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~n~~~~~~~~~~~l~~L~~L~l~~~~~ 458 (794)
+...|++.++.++.+|..+ +++|+.|++++|.++.+|..+. ++|++|++++|.+...+..+. ++|+.|++++|.+
T Consensus 179 ~~~~L~L~~~~LtsLP~~I-p~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L 253 (754)
T PRK15370 179 NKTELRLKILGLTTIPACI-PEQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSINRI 253 (754)
T ss_pred CceEEEeCCCCcCcCCccc-ccCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCCcc
Confidence 3445566666666676655 3578888888888888887654 478888888887664433332 4677788887765
Q ss_pred cccccccccCccccccccccccccccccccccCCCCCccEEEecCCCCCCCCCccccCCCCCcEEEccCccCcccCcccc
Q 003802 459 LLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPPSIV 538 (794)
Q Consensus 459 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~l~ 538 (794)
. .+|..+. .+|+.|++++|.+. .+|..+. ++|++|++++|.+.. +|..+. ++|+.|++++|.++.+|..+
T Consensus 254 ~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~LP~~l- 323 (754)
T PRK15370 254 T-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTALPETL- 323 (754)
T ss_pred C-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCccccCCccc-
Confidence 4 5555443 46777777766544 4565443 467777777765543 343332 35666677777666665433
Q ss_pred cCCCCCEEEcCCCCCCCCccccccchhccccCCCCCCCccccCCCCCCCCCCCEEecCCCCCccCCCCccccCCCCCCeE
Q 003802 539 QLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAI 618 (794)
Q Consensus 539 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L 618 (794)
.++|+.|++++|.... ++. .-+++|+.|++++|++.. +|..+ .++|+.|
T Consensus 324 -~~sL~~L~Ls~N~Lt~-------------------------LP~-~l~~sL~~L~Ls~N~L~~--LP~~l--p~~L~~L 372 (754)
T PRK15370 324 -PPGLKTLEAGENALTS-------------------------LPA-SLPPELQVLDVSKNQITV--LPETL--PPTITTL 372 (754)
T ss_pred -cccceeccccCCcccc-------------------------CCh-hhcCcccEEECCCCCCCc--CChhh--cCCcCEE
Confidence 2456666666554110 000 001356666666665322 44433 2456666
Q ss_pred eCCCCCCccCchhhhccCCCCEEecCCCc
Q 003802 619 DLSGNNFFSLPSSINQLLKLKILCLEKCR 647 (794)
Q Consensus 619 ~L~~n~l~~lp~~l~~l~~L~~L~L~~n~ 647 (794)
+|++|+++.+|..+. +.|+.|++++|+
T Consensus 373 dLs~N~Lt~LP~~l~--~sL~~LdLs~N~ 399 (754)
T PRK15370 373 DVSRNALTNLPENLP--AALQIMQASRNN 399 (754)
T ss_pred ECCCCcCCCCCHhHH--HHHHHHhhccCC
Confidence 666666665555443 245555565554
No 19
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.69 E-value=1.4e-18 Score=169.38 Aligned_cols=221 Identities=17% Similarity=0.143 Sum_probs=152.2
Q ss_pred CCeEEEEEecCCcccccchhhhccCCCCcEEEEcCcccCCCccccccCccee---e-eecCCCCCCCCCC--CCCCceEE
Q 003802 332 TDAVEAIIVDVPEMTELEAKSFSTMSNLRLLEINNLYSSGNLEYLSNNLRYL---K-WHEYPFNSLPVSF--RPEKLFKL 405 (794)
Q Consensus 332 ~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L---~-~~~~~~~~l~~~~--~~~~L~~L 405 (794)
.+....+.++.|.+..+++.+|+.+++||.|||++|.|+.+-|..|..|+.| . +.++.++++|... .+..|+.|
T Consensus 66 P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrL 145 (498)
T KOG4237|consen 66 PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRL 145 (498)
T ss_pred CCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHH
Confidence 3567889999999999999999999999999999999999999888766543 2 3347888888764 67788888
Q ss_pred EcCCCCcccccc-cccccccCceeccCCCcCccCCCC-CCCCCCCCEEecccccccc------------cc---------
Q 003802 406 NLCNSRIKYLWK-GIKPLKELKFMNLSHSCNLIRTPD-FTGVPNLERLNLEGCTRLL------------EV--------- 462 (794)
Q Consensus 406 ~L~~n~i~~l~~-~~~~l~~L~~L~L~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~------------~~--------- 462 (794)
.+.-|.+..++. .|..+++|..|.+.+|.+...... |..+..++++.+..|.+.. ..
T Consensus 146 llNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc 225 (498)
T KOG4237|consen 146 LLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARC 225 (498)
T ss_pred hcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhccccee
Confidence 888888886654 478888888888888876666553 7777777777766554211 00
Q ss_pred ----------------------------------------c-ccccCccccccccccccccccccccccCCCCCccEEEe
Q 003802 463 ----------------------------------------H-QSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCL 501 (794)
Q Consensus 463 ----------------------------------------~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L 501 (794)
| ..|..+++|+.|++++|.+...-+.+|..+.+++.|.|
T Consensus 226 ~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L 305 (498)
T KOG4237|consen 226 VSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYL 305 (498)
T ss_pred cchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhc
Confidence 1 12455566666666666655555556666666666666
Q ss_pred cCCCCCCCCCccccCCCCCcEEEccCccCcc-cCcccccCCCCCEEEcCCCC
Q 003802 502 CGCLKLEKLPQDLGEVECLEELDVGGTAIRQ-IPPSIVQLVNLKIFSLHGCK 552 (794)
Q Consensus 502 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-l~~~l~~l~~L~~L~l~~~~ 552 (794)
..|++...-...|.++..|+.|+|++|+|+. .|..|..+..|.+|++-.|.
T Consensus 306 ~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 306 TRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNP 357 (498)
T ss_pred CcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCc
Confidence 6665554444456666666666666666663 34455556666666665544
No 20
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.63 E-value=6.6e-18 Score=145.53 Aligned_cols=158 Identities=25% Similarity=0.341 Sum_probs=84.8
Q ss_pred CCCCCCCCCceEEEcCCCCcccccccccccccCceeccCCCcCccCCCCCCCCCCCCEEecccccccccccccccCcccc
Q 003802 393 LPVSFRPEKLFKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRL 472 (794)
Q Consensus 393 l~~~~~~~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L 472 (794)
+++.|.++++..|-||+|.++.+|..+..+.+|+.|++++|++...++.++++++|+.|++.-|. ...+|..|+.++.|
T Consensus 26 ~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnr-l~~lprgfgs~p~l 104 (264)
T KOG0617|consen 26 LPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNR-LNILPRGFGSFPAL 104 (264)
T ss_pred cccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhh-hhcCccccCCCchh
Confidence 34444455555555555555555555555555555555555555555555555555555555443 23445555555555
Q ss_pred ccccccccccc-cccccccCCCCCccEEEecCCCCCCCCCccccCCCCCcEEEccCccCcccCcccccCCCCCEEEcCCC
Q 003802 473 ILLNLKDCRNL-VSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPPSIVQLVNLKIFSLHGC 551 (794)
Q Consensus 473 ~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~ 551 (794)
+.||+++|++. ..+|..|..+..|+.|+|+.|.+. .+|..++++++|+.|.+.+|.+-++|..++.++.|++|.+.+|
T Consensus 105 evldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 105 EVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGN 183 (264)
T ss_pred hhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccc
Confidence 55555555443 235555555555555555554432 3444455555555555555555555555555555555555555
Q ss_pred C
Q 003802 552 K 552 (794)
Q Consensus 552 ~ 552 (794)
.
T Consensus 184 r 184 (264)
T KOG0617|consen 184 R 184 (264)
T ss_pred e
Confidence 4
No 21
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.62 E-value=2.4e-17 Score=160.99 Aligned_cols=264 Identities=18% Similarity=0.172 Sum_probs=153.1
Q ss_pred ecCCCCCCCCCCCCCCceEEEcCCCCccccccc-ccccccCceeccCCCcCccCCCC-CCCCCCCCEEeccccccccccc
Q 003802 386 HEYPFNSLPVSFRPEKLFKLNLCNSRIKYLWKG-IKPLKELKFMNLSHSCNLIRTPD-FTGVPNLERLNLEGCTRLLEVH 463 (794)
Q Consensus 386 ~~~~~~~l~~~~~~~~L~~L~L~~n~i~~l~~~-~~~l~~L~~L~L~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~ 463 (794)
.+-.+..+|..++ ..-..++|..|.|+.+|+. |+.+++||.|||++|.+..+.|+ |.++++|..|-+.+++.+..+|
T Consensus 54 r~~GL~eVP~~LP-~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~ 132 (498)
T KOG4237|consen 54 RGKGLTEVPANLP-PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLP 132 (498)
T ss_pred cCCCcccCcccCC-CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhh
Confidence 3344555665553 3567788888888888765 88889999999998888887777 8888888887777744455555
Q ss_pred -ccccCccccccccccccccccccccccCCCCCccEEEecCCCCCCCCCccccCCCCCcEEEccCccCc---cc------
Q 003802 464 -QSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIR---QI------ 533 (794)
Q Consensus 464 -~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~---~l------ 533 (794)
..|++|..|+.|.+.-|++.-...+.+..+++|..|.+..|.+...-...|..+.+++++.+..|.+- .+
T Consensus 133 k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~ 212 (498)
T KOG4237|consen 133 KGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADD 212 (498)
T ss_pred hhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhH
Confidence 66788888888888887776666777888888888888887765544446778888888887776532 11
Q ss_pred ----CcccccCCCCCEEEcCCCC-CCCCccccccchhcc-ccCCCCC-CCccccCCCCCCCCCCCEEecCCCCCccCCCC
Q 003802 534 ----PPSIVQLVNLKIFSLHGCK-GQPPKILSSNFFLSL-LLPNKNS-DSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIP 606 (794)
Q Consensus 534 ----~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~ 606 (794)
|..++.........+.+.+ ...+..-.......+ .....+. .........|..+++|+.|++++|. +++.-+
T Consensus 213 ~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~-i~~i~~ 291 (498)
T KOG4237|consen 213 LAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNK-ITRIED 291 (498)
T ss_pred HhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCc-cchhhh
Confidence 1111111111111111111 000000000000000 0000000 0000111125556666666666666 444555
Q ss_pred ccccCCCCCCeEeCCCCCCccCch-hhhccCCCCEEecCCCcCCCC
Q 003802 607 SDIGSLFSLEAIDLSGNNFFSLPS-SINQLLKLKILCLEKCRNLKS 651 (794)
Q Consensus 607 ~~~~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~L~~n~~~~~ 651 (794)
.+|.+...+++|.|..|++..+.. .|.++..|+.|+|.+|++...
T Consensus 292 ~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~ 337 (498)
T KOG4237|consen 292 GAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTV 337 (498)
T ss_pred hhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEE
Confidence 556666666666666666654432 345566666666666654433
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.62 E-value=1.9e-17 Score=142.73 Aligned_cols=159 Identities=26% Similarity=0.347 Sum_probs=136.2
Q ss_pred ceeeeecCCCCCCCCCC-CCCCceEEEcCCCCcccccccccccccCceeccCCCcCccCCCCCCCCCCCCEEeccccccc
Q 003802 381 RYLKWHEYPFNSLPVSF-RPEKLFKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCTRL 459 (794)
Q Consensus 381 ~~L~~~~~~~~~l~~~~-~~~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~n~~~~~~~~~~~l~~L~~L~l~~~~~~ 459 (794)
..|.++++.+..+|..+ .+.+|+.|++++|.|+++|.+++.+++|++|+++-|.+...+..|+.+|.|++||+++|++.
T Consensus 36 TrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~ 115 (264)
T KOG0617|consen 36 TRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLN 115 (264)
T ss_pred hhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccccccc
Confidence 33444444444454444 56799999999999999999999999999999999988888888999999999999998865
Q ss_pred -ccccccccCccccccccccccccccccccccCCCCCccEEEecCCCCCCCCCccccCCCCCcEEEccCccCcccCcccc
Q 003802 460 -LEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPPSIV 538 (794)
Q Consensus 460 -~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~l~ 538 (794)
..+|..|..++.|+-|.+++|. -..+|..++++++||.|.+..|.+.. +|..++.++.|++|++.+|+++.+|+.++
T Consensus 116 e~~lpgnff~m~tlralyl~dnd-fe~lp~dvg~lt~lqil~lrdndll~-lpkeig~lt~lrelhiqgnrl~vlppel~ 193 (264)
T KOG0617|consen 116 ENSLPGNFFYMTTLRALYLGDND-FEILPPDVGKLTNLQILSLRDNDLLS-LPKEIGDLTRLRELHIQGNRLTVLPPELA 193 (264)
T ss_pred cccCCcchhHHHHHHHHHhcCCC-cccCChhhhhhcceeEEeeccCchhh-CcHHHHHHHHHHHHhcccceeeecChhhh
Confidence 4688899999999999999987 46788899999999999999987764 78899999999999999999999998876
Q ss_pred cCC
Q 003802 539 QLV 541 (794)
Q Consensus 539 ~l~ 541 (794)
++.
T Consensus 194 ~l~ 196 (264)
T KOG0617|consen 194 NLD 196 (264)
T ss_pred hhh
Confidence 643
No 23
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.55 E-value=1.6e-15 Score=159.35 Aligned_cols=35 Identities=26% Similarity=0.239 Sum_probs=17.1
Q ss_pred CCCCeEeCCCCCCc-----cCchhhhccCCCCEEecCCCc
Q 003802 613 FSLEAIDLSGNNFF-----SLPSSINQLLKLKILCLEKCR 647 (794)
Q Consensus 613 ~~L~~L~L~~n~l~-----~lp~~l~~l~~L~~L~L~~n~ 647 (794)
+.|++|++++|.++ .+...+..+++|+++++++|.
T Consensus 250 ~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~ 289 (319)
T cd00116 250 ISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNK 289 (319)
T ss_pred CCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCC
Confidence 45555555555543 222333444555555555555
No 24
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.55 E-value=5.7e-16 Score=162.70 Aligned_cols=62 Identities=27% Similarity=0.370 Sum_probs=33.1
Q ss_pred CCCCCEEecCCCCCccC---CCCccccCCCCCCeEeCCCCCCccC-chhh-hc----cCCCCEEecCCCcC
Q 003802 587 LSSLQTLDLSDCNLLEG---AIPSDIGSLFSLEAIDLSGNNFFSL-PSSI-NQ----LLKLKILCLEKCRN 648 (794)
Q Consensus 587 ~~~L~~L~l~~n~~~~~---~~~~~~~~l~~L~~L~L~~n~l~~l-p~~l-~~----l~~L~~L~L~~n~~ 648 (794)
+++|+.|++++|.+... .++..+..+++|++|++++|.++.. ...+ .. .+.|++|++++|.+
T Consensus 192 ~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i 262 (319)
T cd00116 192 NCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDI 262 (319)
T ss_pred CCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCC
Confidence 35666666666653211 1223345566677777777766521 1111 11 35777777777754
No 25
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.42 E-value=1.9e-11 Score=147.35 Aligned_cols=283 Identities=13% Similarity=0.151 Sum_probs=172.3
Q ss_pred hhhHhHhcCCCCeEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEEechhhhcccChHHHHHHHHHHHhccccc----
Q 003802 3 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDL---- 78 (794)
Q Consensus 3 ~l~~~l~~~~~~~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---- 78 (794)
++.+.|+.. ...+++.|+|++|.||||++.++.+.. +.++|++... ...+.......++..+......
T Consensus 21 rl~~~l~~~-~~~~~~~v~apaG~GKTtl~~~~~~~~----~~~~w~~l~~---~d~~~~~f~~~l~~~l~~~~~~~~~~ 92 (903)
T PRK04841 21 RLLAKLSGA-NNYRLVLVTSPAGYGKTTLISQWAAGK----NNLGWYSLDE---SDNQPERFASYLIAALQQATNGHCSK 92 (903)
T ss_pred HHHHHHhcc-cCCCeEEEECCCCCCHHHHHHHHHHhC----CCeEEEecCc---ccCCHHHHHHHHHHHHHHhcCcccch
Confidence 455666543 457899999999999999999988642 3688997321 2223333444444443211110
Q ss_pred --------cccchhhhHHHHHHHhc--CCeEEEEEcCCCChH------HHHHHhcCCCCCCCCCEEEEEeCChhhhh--h
Q 003802 79 --------IIWDVHKGINLIRWRLC--RKRVLVILDDVDQLE------QLQALVGNHDWFGFGSRIIITSRDEHVLK--S 140 (794)
Q Consensus 79 --------~~~~~~~~~~~l~~~l~--~~r~LlVlDd~~~~~------~~~~l~~~~~~~~~gs~IlvTtR~~~v~~--~ 140 (794)
...+.......+...+. +++++|||||+...+ .+..+.... .++.++|||||...-.. .
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~---~~~~~lv~~sR~~~~~~~~~ 169 (903)
T PRK04841 93 SEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQ---PENLTLVVLSRNLPPLGIAN 169 (903)
T ss_pred hhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhC---CCCeEEEEEeCCCCCCchHh
Confidence 00111222233333332 689999999996653 233333332 35678889999742111 1
Q ss_pred c-CcCcEEEcC----CCChHhHHHHHHhhccCCCCCChhHHHHHHHHHHHhCCCchHHHHHhhhhcCCChHHHHHHHHHH
Q 003802 141 H-GVTNTYKVR----GLDYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIEVLGSFLCGRSVEEWKSALNRL 215 (794)
Q Consensus 141 ~-~~~~~~~l~----~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~a~~L~~~~~~~w~~~l~~l 215 (794)
+ ......++. +|+.+|+.++|....+.. ...+.+.+|.+.++|.|+++..++..+...... .......+
T Consensus 170 l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~-----~~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~-~~~~~~~~ 243 (903)
T PRK04841 170 LRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSP-----IEAAESSRLCDDVEGWATALQLIALSARQNNSS-LHDSARRL 243 (903)
T ss_pred HHhcCcceecCHHhCCCCHHHHHHHHHhccCCC-----CCHHHHHHHHHHhCChHHHHHHHHHHHhhCCCc-hhhhhHhh
Confidence 1 112244555 999999999998765322 123567889999999999999888776542210 11111222
Q ss_pred HcCCChhHHHHHHh-hccCCChhhHhhhhhhcccccCCCHHHHHHhhhhcCCCchhhHHHHhhccccee-ec---CeehH
Q 003802 216 QEAPNEKVLKVLRI-SYDGLDRRDKEIFLDIACFFKGKDEDRVRKKLDSCGFNSDIGIRELLDKSLITI-VN---NKLWM 290 (794)
Q Consensus 216 ~~~~~~~~~~~l~~-sy~~L~~~~~~~~~~~s~fp~~~~~~~l~~~~~~~g~~~~~~l~~L~~~~ll~~-~~---~~~~m 290 (794)
.......+...+.- -++.||++.+..+...|+++ .++.+....+... -.....++++...+++.. .+ .+|++
T Consensus 244 ~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~-~~~~~l~~~l~~~--~~~~~~L~~l~~~~l~~~~~~~~~~~yr~ 320 (903)
T PRK04841 244 AGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR-SMNDALIVRVTGE--ENGQMRLEELERQGLFIQRMDDSGEWFRY 320 (903)
T ss_pred cCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc-cCCHHHHHHHcCC--CcHHHHHHHHHHCCCeeEeecCCCCEEeh
Confidence 11122345554433 47899999999999999987 5665544444421 122556899999998653 22 37889
Q ss_pred HHHHHHHHHHHHhhh
Q 003802 291 HDLLQEMGWEIVREH 305 (794)
Q Consensus 291 h~li~~~~~~~~~~~ 305 (794)
|++++++.+......
T Consensus 321 H~L~r~~l~~~l~~~ 335 (903)
T PRK04841 321 HPLFASFLRHRCQWE 335 (903)
T ss_pred hHHHHHHHHHHHHhc
Confidence 999999998776433
No 26
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.36 E-value=4.2e-12 Score=145.60 Aligned_cols=250 Identities=22% Similarity=0.249 Sum_probs=138.6
Q ss_pred CceEEEcCCCCcccccccccccccCceeccCCCc--CccCCCC-CCCCCCCCEEecccccccccccccccCccccccccc
Q 003802 401 KLFKLNLCNSRIKYLWKGIKPLKELKFMNLSHSC--NLIRTPD-FTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNL 477 (794)
Q Consensus 401 ~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~n~--~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 477 (794)
..+...+.+|.+..++.... .++|++|-+.+|. +...... |..++.|++|||++|...+.+|..++.|.+||+|++
T Consensus 524 ~~rr~s~~~~~~~~~~~~~~-~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L 602 (889)
T KOG4658|consen 524 SVRRMSLMNNKIEHIAGSSE-NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDL 602 (889)
T ss_pred heeEEEEeccchhhccCCCC-CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccc
Confidence 34444444444444443322 2356666666554 2222222 566677777777776666777777777777777777
Q ss_pred cccccccccccccCCCCCccEEEecCCCCCCCCCccccCCCCCcEEEccCccCc---ccCcccccCCCCCEEEcCCCCCC
Q 003802 478 KDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIR---QIPPSIVQLVNLKIFSLHGCKGQ 554 (794)
Q Consensus 478 ~~n~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~---~l~~~l~~l~~L~~L~l~~~~~~ 554 (794)
+++. +..+|..++++.+|.+|++..+.....+|.....+++|++|.+...... ..-..+.++.+|+.+........
T Consensus 603 ~~t~-I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~ 681 (889)
T KOG4658|consen 603 SDTG-ISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVL 681 (889)
T ss_pred cCCC-ccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhH
Confidence 7644 4567777777777777777776665555555566777777776554322 11223345555555555443321
Q ss_pred CCccc-cccchhccccCCC-CCCCccccCCCCCCCCCCCEEecCCCCCccCCCCcccc------CCCCCCeEeCCCCCCc
Q 003802 555 PPKIL-SSNFFLSLLLPNK-NSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIG------SLFSLEAIDLSGNNFF 626 (794)
Q Consensus 555 ~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~------~l~~L~~L~L~~n~l~ 626 (794)
....+ ....+........ ...........+..+.+|+.|.+.+|.+.+ ....+.. .++++..+.+.+|..-
T Consensus 682 ~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e-~~~~~~~~~~~~~~f~~l~~~~~~~~~~~ 760 (889)
T KOG4658|consen 682 LLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISE-IVIEWEESLIVLLCFPNLSKVSILNCHML 760 (889)
T ss_pred hHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCch-hhcccccccchhhhHHHHHHHHhhccccc
Confidence 11111 1111111100000 112223334557788999999999998543 1111211 1345566666666555
Q ss_pred cCchhhhccCCCCEEecCCCcCCCCCC
Q 003802 627 SLPSSINQLLKLKILCLEKCRNLKSLP 653 (794)
Q Consensus 627 ~lp~~l~~l~~L~~L~L~~n~~~~~~~ 653 (794)
..+.+..-.|+|+.|.+..|+..+.+.
T Consensus 761 r~l~~~~f~~~L~~l~l~~~~~~e~~i 787 (889)
T KOG4658|consen 761 RDLTWLLFAPHLTSLSLVSCRLLEDII 787 (889)
T ss_pred cccchhhccCcccEEEEecccccccCC
Confidence 555566677899999999998877654
No 27
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.24 E-value=5.1e-13 Score=137.13 Aligned_cols=191 Identities=23% Similarity=0.387 Sum_probs=122.4
Q ss_pred ceEEEcCCCCcccccccccccccCceeccCCCcCccCCCCCCCCCCCCEEecccccccccccccccCccccccccccccc
Q 003802 402 LFKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCR 481 (794)
Q Consensus 402 L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~ 481 (794)
-...||+.|++.++|..+..+..|+.+.|..|.+. .+|..+.++..|.+|+++.|.
T Consensus 77 t~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r------------------------~ip~~i~~L~~lt~l~ls~Nq 132 (722)
T KOG0532|consen 77 TVFADLSRNRFSELPEEACAFVSLESLILYHNCIR------------------------TIPEAICNLEALTFLDLSSNQ 132 (722)
T ss_pred hhhhhccccccccCchHHHHHHHHHHHHHHhccce------------------------ecchhhhhhhHHHHhhhccch
Confidence 34455555555555555555555555555544333 445556666666666666655
Q ss_pred cccccccccCCCCCccEEEecCCCCCCCCCccccCCCCCcEEEccCccCcccCcccccCCCCCEEEcCCCC-CCCCcccc
Q 003802 482 NLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPPSIVQLVNLKIFSLHGCK-GQPPKILS 560 (794)
Q Consensus 482 ~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~-~~~~~~~~ 560 (794)
...+|..++.++ |+.|-+++|++ +.+|..++.+..|..|+.+.|.+..+|..++.+.+|+.|.+..|. ...|
T Consensus 133 -lS~lp~~lC~lp-Lkvli~sNNkl-~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp---- 205 (722)
T KOG0532|consen 133 -LSHLPDGLCDLP-LKVLIVSNNKL-TSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLP---- 205 (722)
T ss_pred -hhcCChhhhcCc-ceeEEEecCcc-ccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCC----
Confidence 445566666555 66666666443 445666666667777777777777777777777777777766665 1111
Q ss_pred ccchhccccCCCCCCCccccCCCCCCCCCCCEEecCCCCCccCCCCccccCCCCCCeEeCCCCCCccCchhh---hccCC
Q 003802 561 SNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLPSSI---NQLLK 637 (794)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l---~~l~~ 637 (794)
+.+. .-.|..||+|.|++.. +|-.|.+|+.|++|-|.+|-+.+-|..+ +...-
T Consensus 206 ---------------------~El~-~LpLi~lDfScNkis~--iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHI 261 (722)
T KOG0532|consen 206 ---------------------EELC-SLPLIRLDFSCNKISY--LPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHI 261 (722)
T ss_pred ---------------------HHHh-CCceeeeecccCceee--cchhhhhhhhheeeeeccCCCCCChHHHHhccceee
Confidence 1122 2258888999888766 8888999999999999999888888765 34455
Q ss_pred CCEEecCCCc
Q 003802 638 LKILCLEKCR 647 (794)
Q Consensus 638 L~~L~L~~n~ 647 (794)
.++|+..-|+
T Consensus 262 FKyL~~qA~q 271 (722)
T KOG0532|consen 262 FKYLSTQACQ 271 (722)
T ss_pred eeeecchhcc
Confidence 6778887774
No 28
>PF05729 NACHT: NACHT domain
Probab=99.21 E-value=1.3e-10 Score=108.90 Aligned_cols=142 Identities=25% Similarity=0.310 Sum_probs=86.8
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhhccc------cceEEEEechhhhcccChHHHHHHHHHHHhccccccccchhhhHHH
Q 003802 16 RFIGICGMGGIGKTTLAKVLYNTLKDQF------EASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINL 89 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~~~~~~f------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 89 (794)
|++.|+|.+|+||||+++.++.++.... ...+|+. .+..........+...+........ ..... .
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~~----~~~~~---~ 72 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFS-LRDISDSNNSRSLADLLFDQLPESI----APIEE---L 72 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEe-ehhhhhccccchHHHHHHHhhccch----hhhHH---H
Confidence 5899999999999999999998765443 3444544 2222222222233333433322111 11111 1
Q ss_pred HHH-HhcCCeEEEEEcCCCChHH---------HHHHhcCC-C-CCCCCCEEEEEeCChhh---hhhcCcCcEEEcCCCCh
Q 003802 90 IRW-RLCRKRVLVILDDVDQLEQ---------LQALVGNH-D-WFGFGSRIIITSRDEHV---LKSHGVTNTYKVRGLDY 154 (794)
Q Consensus 90 l~~-~l~~~r~LlVlDd~~~~~~---------~~~l~~~~-~-~~~~gs~IlvTtR~~~v---~~~~~~~~~~~l~~L~~ 154 (794)
+.. ..+.+++++|+|++++... +..+...+ . ...++++|+||+|.... .........+++.+|++
T Consensus 73 ~~~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~ 152 (166)
T PF05729_consen 73 LQELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSE 152 (166)
T ss_pred HHHHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCH
Confidence 111 2247899999999966543 22222211 1 12568999999999765 33344556899999999
Q ss_pred HhHHHHHHhhc
Q 003802 155 VEALQLFHLKV 165 (794)
Q Consensus 155 ~ea~~lf~~~~ 165 (794)
++..++++++.
T Consensus 153 ~~~~~~~~~~f 163 (166)
T PF05729_consen 153 EDIKQYLRKYF 163 (166)
T ss_pred HHHHHHHHHHh
Confidence 99999998775
No 29
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.18 E-value=1.1e-09 Score=119.15 Aligned_cols=284 Identities=17% Similarity=0.167 Sum_probs=177.5
Q ss_pred hhhHhHhcCCCCeEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEEechhhhcccChHHHHHHHHHHHhccccc----
Q 003802 3 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDL---- 78 (794)
Q Consensus 3 ~l~~~l~~~~~~~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---- 78 (794)
++.+.|..+ .+.|.+.|..|+|.||||++.+.+. ....-..+.|++.... ..+.......++..+......
T Consensus 26 rL~~~L~~~-~~~RL~li~APAGfGKttl~aq~~~-~~~~~~~v~Wlslde~---dndp~rF~~yLi~al~~~~p~~~~~ 100 (894)
T COG2909 26 RLLDRLRRA-NDYRLILISAPAGFGKTTLLAQWRE-LAADGAAVAWLSLDES---DNDPARFLSYLIAALQQATPTLGDE 100 (894)
T ss_pred HHHHHHhcC-CCceEEEEeCCCCCcHHHHHHHHHH-hcCcccceeEeecCCc---cCCHHHHHHHHHHHHHHhCccccHH
Confidence 345555554 4689999999999999999999998 3344567899974322 334444555555554422111
Q ss_pred --------cccchhhhHHHHHHHhc--CCeEEEEEcCCCChH------HHHHHhcCCCCCCCCCEEEEEeCChhhhhhc-
Q 003802 79 --------IIWDVHKGINLIRWRLC--RKRVLVILDDVDQLE------QLQALVGNHDWFGFGSRIIITSRDEHVLKSH- 141 (794)
Q Consensus 79 --------~~~~~~~~~~~l~~~l~--~~r~LlVlDd~~~~~------~~~~l~~~~~~~~~gs~IlvTtR~~~v~~~~- 141 (794)
...+.......+...+. .+++.+||||..-.. .++.+.... .++-.++||||++.-....
T Consensus 101 a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~---P~~l~lvv~SR~rP~l~la~ 177 (894)
T COG2909 101 AQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHA---PENLTLVVTSRSRPQLGLAR 177 (894)
T ss_pred HHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhC---CCCeEEEEEeccCCCCcccc
Confidence 11223334444444444 468999999985443 255555554 3678899999986321111
Q ss_pred --CcCcEEEcC----CCChHhHHHHHHhhccCCCCCChhHHHHHHHHHHHhCCCchHHHHHhhhhcC-CChHHHHHHHHH
Q 003802 142 --GVTNTYKVR----GLDYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIEVLGSFLCG-RSVEEWKSALNR 214 (794)
Q Consensus 142 --~~~~~~~l~----~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~a~~L~~-~~~~~w~~~l~~ 214 (794)
-....++++ .|+.+|+.++|..... .+..+..++.+.+..+|.+-|+..++=.+++ .+.+.--..+.
T Consensus 178 lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~-----l~Ld~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~q~~~~Ls- 251 (894)
T COG2909 178 LRLRDELLEIGSEELRFDTEEAAAFLNDRGS-----LPLDAADLKALYDRTEGWAAALQLIALALRNNTSAEQSLRGLS- 251 (894)
T ss_pred eeehhhHHhcChHhhcCChHHHHHHHHHcCC-----CCCChHHHHHHHhhcccHHHHHHHHHHHccCCCcHHHHhhhcc-
Confidence 112233333 5899999999987652 2233356788999999999999999888874 22222111111
Q ss_pred HHcCCChhHHH-HHHhhccCCChhhHhhhhhhcccccCCCHHHHHHhhhhcCCCchhhHHHHhhcccceee----cCeeh
Q 003802 215 LQEAPNEKVLK-VLRISYDGLDRRDKEIFLDIACFFKGKDEDRVRKKLDSCGFNSDIGIRELLDKSLITIV----NNKLW 289 (794)
Q Consensus 215 l~~~~~~~~~~-~l~~sy~~L~~~~~~~~~~~s~fp~~~~~~~l~~~~~~~g~~~~~~l~~L~~~~ll~~~----~~~~~ 289 (794)
.. .+.+.. ...--++.||++.|..+..+|+++. --+.|.......+- ....+++|.++++.-.. .++|+
T Consensus 252 --G~-~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~--f~~eL~~~Ltg~~n-g~amLe~L~~~gLFl~~Ldd~~~Wfr 325 (894)
T COG2909 252 --GA-ASHLSDYLVEEVLDRLPPELRDFLLQTSVLSR--FNDELCNALTGEEN-GQAMLEELERRGLFLQRLDDEGQWFR 325 (894)
T ss_pred --ch-HHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHH--hhHHHHHHHhcCCc-HHHHHHHHHhCCCceeeecCCCceee
Confidence 00 111111 2233468899999999999999863 12344443322221 23348999999997754 66899
Q ss_pred HHHHHHHHHHHHHhhhC
Q 003802 290 MHDLLQEMGWEIVREHH 306 (794)
Q Consensus 290 mh~li~~~~~~~~~~~~ 306 (794)
.|.++.++.+.....+.
T Consensus 326 yH~LFaeFL~~r~~~~~ 342 (894)
T COG2909 326 YHHLFAEFLRQRLQREL 342 (894)
T ss_pred hhHHHHHHHHhhhcccc
Confidence 99999999888776643
No 30
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.11 E-value=2.7e-09 Score=108.67 Aligned_cols=179 Identities=18% Similarity=0.198 Sum_probs=107.9
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEEechhhhcccChHHHHHHHHHHHhccccccccchhhhHHHHHH-
Q 003802 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRW- 92 (794)
Q Consensus 14 ~~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~- 92 (794)
+.+++.|+|++|+||||+++.+++.....=-...|+. ....+..+....+...++..... .+.......+.+
T Consensus 42 ~~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~-----~~~~~~~~~l~~i~~~lG~~~~~--~~~~~~~~~l~~~ 114 (269)
T TIGR03015 42 REGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLV-----NTRVDAEDLLRMVAADFGLETEG--RDKAALLRELEDF 114 (269)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeee-----CCCCCHHHHHHHHHHHcCCCCCC--CCHHHHHHHHHHH
Confidence 3468999999999999999999987653211122322 22234456666777665433221 111122223322
Q ss_pred ----HhcCCeEEEEEcCCCChH--HHHHHhc---CCCCCCCCCEEEEEeCChhhhhhcC----------cCcEEEcCCCC
Q 003802 93 ----RLCRKRVLVILDDVDQLE--QLQALVG---NHDWFGFGSRIIITSRDEHVLKSHG----------VTNTYKVRGLD 153 (794)
Q Consensus 93 ----~l~~~r~LlVlDd~~~~~--~~~~l~~---~~~~~~~gs~IlvTtR~~~v~~~~~----------~~~~~~l~~L~ 153 (794)
...+++.++|+||++... .++.+.. ..........|++|.... ....+. ....+.+++++
T Consensus 115 l~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~ 193 (269)
T TIGR03015 115 LIEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLD 193 (269)
T ss_pred HHHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCC
Confidence 225788999999998764 3444332 211112233455665543 211111 13367899999
Q ss_pred hHhHHHHHHhhccCC--CCCChhHHHHHHHHHHHhCCCchHHHHHhhhh
Q 003802 154 YVEALQLFHLKVSNG--KQPTDYRVELSKYVVNYAGGLPLAIEVLGSFL 200 (794)
Q Consensus 154 ~~ea~~lf~~~~~~~--~~~~~~~~~~~~~i~~~~~g~Plai~~~a~~L 200 (794)
.+|..+++..++... .......++..+.|++.++|.|..|..++..+
T Consensus 194 ~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 194 REETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 999999998776321 11223345788999999999999999888765
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=9.1e-12 Score=124.24 Aligned_cols=57 Identities=19% Similarity=0.177 Sum_probs=24.5
Q ss_pred CcceeeeecCCCCCCCC--CC-CCCCceEEEcCCCCcccc---cccccccccCceeccCCCcC
Q 003802 379 NLRYLKWHEYPFNSLPV--SF-RPEKLFKLNLCNSRIKYL---WKGIKPLKELKFMNLSHSCN 435 (794)
Q Consensus 379 ~l~~L~~~~~~~~~l~~--~~-~~~~L~~L~L~~n~i~~l---~~~~~~l~~L~~L~L~~n~~ 435 (794)
+|+...+.++++...+. .. .+++++.|||++|-++.. -.-..+||+|+.|+|+.|.+
T Consensus 122 kL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl 184 (505)
T KOG3207|consen 122 KLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRL 184 (505)
T ss_pred hhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccc
Confidence 44444444444444332 11 344555555555544322 11133445555555554443
No 32
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.08 E-value=2e-08 Score=108.47 Aligned_cols=271 Identities=18% Similarity=0.169 Sum_probs=147.8
Q ss_pred hhhhHhHhcC--CCCeEEEEEEccCCCcHHHHHHHHHHHhhcccc--ceEEEEechhhhcccChHHHHHHHHHHHhcccc
Q 003802 2 EKMNGYLEAG--LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFE--ASSFLANVREVSVTRGLVPLQEQLLSEVLMERD 77 (794)
Q Consensus 2 ~~l~~~l~~~--~~~~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 77 (794)
++|...+... ....+.+.|+|++|+|||++++.+++..++... ..+++. +........+..++..++.....
T Consensus 40 ~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in----~~~~~~~~~~~~~i~~~l~~~~~ 115 (394)
T PRK00411 40 EELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYIN----CQIDRTRYAIFSEIARQLFGHPP 115 (394)
T ss_pred HHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEE----CCcCCCHHHHHHHHHHHhcCCCC
Confidence 3455555332 233456789999999999999999997765542 234444 22233455667777777654221
Q ss_pred -ccccchhhhHHHHHHHhc--CCeEEEEEcCCCChH------HHHHHhcCCCCCCCCC--EEEEEeCChhhhhhcC----
Q 003802 78 -LIIWDVHKGINLIRWRLC--RKRVLVILDDVDQLE------QLQALVGNHDWFGFGS--RIIITSRDEHVLKSHG---- 142 (794)
Q Consensus 78 -~~~~~~~~~~~~l~~~l~--~~r~LlVlDd~~~~~------~~~~l~~~~~~~~~gs--~IlvTtR~~~v~~~~~---- 142 (794)
....+.++..+.+.+.++ +++.+||||+++... .+..+...... .+++ .||.++....+.....
T Consensus 116 ~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~-~~~~~v~vI~i~~~~~~~~~l~~~~~ 194 (394)
T PRK00411 116 PSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEE-YPGARIGVIGISSDLTFLYILDPRVK 194 (394)
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhc-cCCCeEEEEEEECCcchhhhcCHHHH
Confidence 112234555666666664 456899999997753 24444332221 1232 3555555443322211
Q ss_pred ---cCcEEEcCCCChHhHHHHHHhhccCCCCCChhHHHHHHHHHHHh----CCCchHHHHHhhhh--c---C---CChHH
Q 003802 143 ---VTNTYKVRGLDYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYA----GGLPLAIEVLGSFL--C---G---RSVEE 207 (794)
Q Consensus 143 ---~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~i~~~~----~g~Plai~~~a~~L--~---~---~~~~~ 207 (794)
....+.+.+++.++..+++..++..+........+..+.|++.+ |..+.|+..+-.+. + + -+.+.
T Consensus 195 s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~~~~I~~~~ 274 (394)
T PRK00411 195 SVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREGSRKVTEED 274 (394)
T ss_pred hcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCCCcCHHH
Confidence 12467899999999999998876322111111223344444444 44666666543321 1 1 14455
Q ss_pred HHHHHHHHHcCCChhHHHHHHhhccCCChhhHhhhhhhcccc----cCCCHHHH----HHhhhhcCCCc------hhhHH
Q 003802 208 WKSALNRLQEAPNEKVLKVLRISYDGLDRRDKEIFLDIACFF----KGKDEDRV----RKKLDSCGFNS------DIGIR 273 (794)
Q Consensus 208 w~~~l~~l~~~~~~~~~~~l~~sy~~L~~~~~~~~~~~s~fp----~~~~~~~l----~~~~~~~g~~~------~~~l~ 273 (794)
++.+.+... .....-.+..||.+.|..+..++... .......+ ..+....|..+ ..++.
T Consensus 275 v~~a~~~~~-------~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~~~~~~~~~~~~~l~ 347 (394)
T PRK00411 275 VRKAYEKSE-------IVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELGYEPRTHTRFYEYIN 347 (394)
T ss_pred HHHHHHHHH-------HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcCCCcCcHHHHHHHHH
Confidence 555555441 22334567889988877665544332 11222222 22222334322 23577
Q ss_pred HHhhcccceee
Q 003802 274 ELLDKSLITIV 284 (794)
Q Consensus 274 ~L~~~~ll~~~ 284 (794)
.|...+++...
T Consensus 348 ~L~~~glI~~~ 358 (394)
T PRK00411 348 KLDMLGIINTR 358 (394)
T ss_pred HHHhcCCeEEE
Confidence 78888887754
No 33
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.08 E-value=1.4e-10 Score=125.30 Aligned_cols=197 Identities=28% Similarity=0.392 Sum_probs=136.7
Q ss_pred eeccCCCcCccCCCCCCCCCCCCEEecccccccccccccccCcc-ccccccccccccccccccccCCCCCccEEEecCCC
Q 003802 427 FMNLSHSCNLIRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLK-RLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCL 505 (794)
Q Consensus 427 ~L~L~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~~~ 505 (794)
.+++..+........+..++.++.|++.+|.+ ..++.....+. +|+.|++++|. ...+|..+..+++|+.|++++|.
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i-~~i~~~~~~~~~nL~~L~l~~N~-i~~l~~~~~~l~~L~~L~l~~N~ 174 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNI-TDIPPLIGLLKSNLKELDLSDNK-IESLPSPLRNLPNLKNLDLSFND 174 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCccc-ccCccccccchhhcccccccccc-hhhhhhhhhccccccccccCCch
Confidence 45555555444444455556677777776553 34455555553 77777777765 34555557778888888888776
Q ss_pred CCCCCCccccCCCCCcEEEccCccCcccCcccccCCCCCEEEcCCCCCCCCccccccchhccccCCCCCCCccccCCCCC
Q 003802 506 KLEKLPQDLGEVECLEELDVGGTAIRQIPPSIVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPRFT 585 (794)
Q Consensus 506 ~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 585 (794)
+.. +|...+.+++|+.|++++|++..+|..+..+..|++|.+++|.. ......+.
T Consensus 175 l~~-l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~------------------------~~~~~~~~ 229 (394)
T COG4886 175 LSD-LPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSI------------------------IELLSSLS 229 (394)
T ss_pred hhh-hhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcc------------------------eecchhhh
Confidence 654 34434477888888888888888887766677788888888741 11223366
Q ss_pred CCCCCCEEecCCCCCccCCCCccccCCCCCCeEeCCCCCCccCchhhhccCCCCEEecCCCcCCCCCC
Q 003802 586 GLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLPSSINQLLKLKILCLEKCRNLKSLP 653 (794)
Q Consensus 586 ~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~~ 653 (794)
.+.++..|.+.+|.+.. .+..++.+++|+.|++++|.++.++. ++.+.+|+.|++++|......|
T Consensus 230 ~~~~l~~l~l~~n~~~~--~~~~~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 230 NLKNLSGLELSNNKLED--LPESIGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred hcccccccccCCceeee--ccchhccccccceecccccccccccc-ccccCccCEEeccCccccccch
Confidence 67777777788887533 47778888889999999999888885 8888899999999888665544
No 34
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.07 E-value=5.5e-12 Score=129.65 Aligned_cols=169 Identities=22% Similarity=0.300 Sum_probs=121.9
Q ss_pred eeeecCCCCCCCCCC-CCCCceEEEcCCCCcccccccccccccCceeccCCCcCccCCCCCCCCCCCCEEeccccccccc
Q 003802 383 LKWHEYPFNSLPVSF-RPEKLFKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCTRLLE 461 (794)
Q Consensus 383 L~~~~~~~~~l~~~~-~~~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 461 (794)
.+++.+.+..+|..+ .+..|+.+.|.+|.+..+|..+.++..|++|+|+.|++...+..++.++ |+.|-+++|+ .+.
T Consensus 80 aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNk-l~~ 157 (722)
T KOG0532|consen 80 ADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNK-LTS 157 (722)
T ss_pred hhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCc-ccc
Confidence 344444455555444 3456777778888888888888888888888888887776666666554 7778787765 456
Q ss_pred ccccccCccccccccccccccccccccccCCCCCccEEEecCCCCCCCCCccccCCCCCcEEEccCccCcccCcccccCC
Q 003802 462 VHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPPSIVQLV 541 (794)
Q Consensus 462 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~l~~l~ 541 (794)
+|..++.+..|.+||.+.|. +..+|..++.+.+|+.|++..|+... +|+.+..++ |..||+++|++..+|..|.+|+
T Consensus 158 lp~~ig~~~tl~~ld~s~ne-i~slpsql~~l~slr~l~vrRn~l~~-lp~El~~Lp-Li~lDfScNkis~iPv~fr~m~ 234 (722)
T KOG0532|consen 158 LPEEIGLLPTLAHLDVSKNE-IQSLPSQLGYLTSLRDLNVRRNHLED-LPEELCSLP-LIRLDFSCNKISYLPVDFRKMR 234 (722)
T ss_pred CCcccccchhHHHhhhhhhh-hhhchHHhhhHHHHHHHHHhhhhhhh-CCHHHhCCc-eeeeecccCceeecchhhhhhh
Confidence 77777877888888888876 44667778888888888888876654 455566444 7888888888888888888888
Q ss_pred CCCEEEcCCCCCCCC
Q 003802 542 NLKIFSLHGCKGQPP 556 (794)
Q Consensus 542 ~L~~L~l~~~~~~~~ 556 (794)
.|++|-|.+|....|
T Consensus 235 ~Lq~l~LenNPLqSP 249 (722)
T KOG0532|consen 235 HLQVLQLENNPLQSP 249 (722)
T ss_pred hheeeeeccCCCCCC
Confidence 888888888874333
No 35
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=3.7e-11 Score=119.95 Aligned_cols=65 Identities=26% Similarity=0.243 Sum_probs=29.5
Q ss_pred CCCCCCCCEEecCCCCCccCCCCcc-----ccCCCCCCeEeCCCCCCccCch--hhhccCCCCEEecCCCcC
Q 003802 584 FTGLSSLQTLDLSDCNLLEGAIPSD-----IGSLFSLEAIDLSGNNFFSLPS--SINQLLKLKILCLEKCRN 648 (794)
Q Consensus 584 ~~~~~~L~~L~l~~n~~~~~~~~~~-----~~~l~~L~~L~L~~n~l~~lp~--~l~~l~~L~~L~L~~n~~ 648 (794)
.+.++.|..|+++.|.+.+-..|+. ...+++|++|+++.|++...++ .+..+++|+.|.+..|++
T Consensus 267 ~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~l 338 (505)
T KOG3207|consen 267 VGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYL 338 (505)
T ss_pred cccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccc
Confidence 3344444555555444322222322 2334555555555555543331 234445555555555544
No 36
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.02 E-value=5e-11 Score=115.86 Aligned_cols=231 Identities=22% Similarity=0.253 Sum_probs=146.2
Q ss_pred CCCCceEEEcCCCCcc-----cccccccccccCceeccCCCcCccC----CC--------CCCCCCCCCEEecccccccc
Q 003802 398 RPEKLFKLNLCNSRIK-----YLWKGIKPLKELKFMNLSHSCNLIR----TP--------DFTGVPNLERLNLEGCTRLL 460 (794)
Q Consensus 398 ~~~~L~~L~L~~n~i~-----~l~~~~~~l~~L~~L~L~~n~~~~~----~~--------~~~~l~~L~~L~l~~~~~~~ 460 (794)
+...+..++|++|.+. .+.+.+.+.++|+..++++-. .+. .| .+..+++|++|+||+|.+..
T Consensus 28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~f-tGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~ 106 (382)
T KOG1909|consen 28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMF-TGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP 106 (382)
T ss_pred ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhh-cCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc
Confidence 4568888899998876 344557777788888887642 222 11 14567788889998887654
Q ss_pred cccc----cccCccccccccccccccccc-------------cccccCCCCCccEEEecCCCCCCC----CCccccCCCC
Q 003802 461 EVHQ----SVGTLKRLILLNLKDCRNLVS-------------FPKNVCLMKSLKILCLCGCLKLEK----LPQDLGEVEC 519 (794)
Q Consensus 461 ~~~~----~~~~l~~L~~L~l~~n~~~~~-------------~~~~~~~l~~L~~L~L~~~~~~~~----~~~~~~~l~~ 519 (794)
..+. -+..+..|++|.|.+|.+... ....++.-++|+++...+|.+... +...|...+.
T Consensus 107 ~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~ 186 (382)
T KOG1909|consen 107 KGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPT 186 (382)
T ss_pred cchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccc
Confidence 4443 345678888888888764321 112234567788888877765432 2234666778
Q ss_pred CcEEEccCccCc-----ccCcccccCCCCCEEEcCCCCCCCCccccccchhccccCCCCCCCccccCCCCCCCCCCCEEe
Q 003802 520 LEELDVGGTAIR-----QIPPSIVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLD 594 (794)
Q Consensus 520 L~~L~l~~~~l~-----~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 594 (794)
|+.+.++.|.|. .+...+..+++|+.|++..|.......... -..+..+++|+.|+
T Consensus 187 leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~L-------------------akaL~s~~~L~El~ 247 (382)
T KOG1909|consen 187 LEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVAL-------------------AKALSSWPHLRELN 247 (382)
T ss_pred cceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHH-------------------HHHhcccchheeec
Confidence 888888888765 223456778888888888876221111000 01255667888888
Q ss_pred cCCCCCccCCC---Cccc-cCCCCCCeEeCCCCCCc-----cCchhhhccCCCCEEecCCCcC
Q 003802 595 LSDCNLLEGAI---PSDI-GSLFSLEAIDLSGNNFF-----SLPSSINQLLKLKILCLEKCRN 648 (794)
Q Consensus 595 l~~n~~~~~~~---~~~~-~~l~~L~~L~L~~n~l~-----~lp~~l~~l~~L~~L~L~~n~~ 648 (794)
+++|.+.+... ...+ ...++|+.|.+.+|.++ .+..++...|.|+.|+|++|.+
T Consensus 248 l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 248 LGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred ccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 88887433211 1111 24678888888888776 2333456678888888888874
No 37
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.01 E-value=4.9e-10 Score=121.05 Aligned_cols=188 Identities=24% Similarity=0.312 Sum_probs=115.6
Q ss_pred EEEEcCcccCCCccccc--cCcceeeeecCCCCCCCCCCCCC--CceEEEcCCCCcccccccccccccCceeccCCCcCc
Q 003802 361 LLEINNLYSSGNLEYLS--NNLRYLKWHEYPFNSLPVSFRPE--KLFKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNL 436 (794)
Q Consensus 361 ~L~l~~n~~~~~~~~~~--~~l~~L~~~~~~~~~l~~~~~~~--~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~n~~~ 436 (794)
.+++..+.+........ ..+..|.+.++.+.+++...... +|+.|++++|.+..+|..+..+++|+.|++++|++.
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~ 176 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLS 176 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhh
Confidence 46666665533333222 35667777777777777666443 677777777777777666777777777777777665
Q ss_pred cCCCCCCCCCCCCEEecccccccccccccccCccccccccccccccccccccccCCCCCccEEEecCCCCCCCCCccccC
Q 003802 437 IRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGE 516 (794)
Q Consensus 437 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~ 516 (794)
..++.....++|+.|++++|.+ ..+|..+..+..|++|.+++|. ....+..+.++.++..|.+.+|.... ++..++.
T Consensus 177 ~l~~~~~~~~~L~~L~ls~N~i-~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~~~~~~~l~~l~l~~n~~~~-~~~~~~~ 253 (394)
T COG4886 177 DLPKLLSNLSNLNNLDLSGNKI-SDLPPEIELLSALEELDLSNNS-IIELLSSLSNLKNLSGLELSNNKLED-LPESIGN 253 (394)
T ss_pred hhhhhhhhhhhhhheeccCCcc-ccCchhhhhhhhhhhhhhcCCc-ceecchhhhhcccccccccCCceeee-ccchhcc
Confidence 5555555667777777777653 3445444455557777777664 22334445666666666655544432 2445666
Q ss_pred CCCCcEEEccCccCcccCcccccCCCCCEEEcCCCC
Q 003802 517 VECLEELDVGGTAIRQIPPSIVQLVNLKIFSLHGCK 552 (794)
Q Consensus 517 l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~ 552 (794)
+++++.|++++|.++.++. ++.+.+|+.|+++++.
T Consensus 254 l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~ 288 (394)
T COG4886 254 LSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNS 288 (394)
T ss_pred ccccceecccccccccccc-ccccCccCEEeccCcc
Confidence 6667777777776666655 6666666666666665
No 38
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.01 E-value=7.4e-11 Score=111.73 Aligned_cols=60 Identities=30% Similarity=0.354 Sum_probs=38.5
Q ss_pred CCCCEEecCCCCCccCCCCccccCCCCCCeEeCCCCCCccCc--hhhhccCCCCEEecCCCcCCC
Q 003802 588 SSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLP--SSINQLLKLKILCLEKCRNLK 650 (794)
Q Consensus 588 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp--~~l~~l~~L~~L~L~~n~~~~ 650 (794)
-+.+.|.|+.|. ++ -...++.+-+|..||+++|+|..+. ..++++|.|+.+.|.+|++..
T Consensus 352 GNIKtL~La~N~-iE--~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 352 GNIKTLKLAQNK-IE--TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred cCEeeeehhhhh-Hh--hhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 355556666665 22 2334556667777777777776443 357788888888888888543
No 39
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.00 E-value=2.7e-10 Score=104.36 Aligned_cols=129 Identities=25% Similarity=0.335 Sum_probs=46.5
Q ss_pred cCCCCCcEEEccCccCcccCcccc-cCCCCCEEEcCCCCCCCCccccccchhccccCCCCCCCccccCCCCCCCCCCCEE
Q 003802 515 GEVECLEELDVGGTAIRQIPPSIV-QLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTL 593 (794)
Q Consensus 515 ~~l~~L~~L~l~~~~l~~l~~~l~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L 593 (794)
.+..++++|+|.+|.|+.+. .++ .+.+|+.|++++|. ...++.+..+++|+.|
T Consensus 16 ~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~-------------------------I~~l~~l~~L~~L~~L 69 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQ-------------------------ITKLEGLPGLPRLKTL 69 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS---------------------------S--TT----TT--EE
T ss_pred cccccccccccccccccccc-chhhhhcCCCEEECCCCC-------------------------CccccCccChhhhhhc
Confidence 34445666666666666553 343 45666667776665 2233446667788888
Q ss_pred ecCCCCCccCCCCccc-cCCCCCCeEeCCCCCCccCc--hhhhccCCCCEEecCCCcCCCCCCCCCcccccccccccccc
Q 003802 594 DLSDCNLLEGAIPSDI-GSLFSLEAIDLSGNNFFSLP--SSINQLLKLKILCLEKCRNLKSLPELPPEIVFVGAEDCTSL 670 (794)
Q Consensus 594 ~l~~n~~~~~~~~~~~-~~l~~L~~L~L~~n~l~~lp--~~l~~l~~L~~L~L~~n~~~~~~~~~~~~L~~L~l~~~~~L 670 (794)
++++|.+.+ +...+ ..+++|++|++++|+|.++. ..++.+++|+.|+|.+|+.... +.-+...+..||+|
T Consensus 70 ~L~~N~I~~--i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-----~~YR~~vi~~lP~L 142 (175)
T PF14580_consen 70 DLSNNRISS--ISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK-----KNYRLFVIYKLPSL 142 (175)
T ss_dssp E--SS---S---CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS-----TTHHHHHHHH-TT-
T ss_pred ccCCCCCCc--cccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccch-----hhHHHHHHHHcChh
Confidence 888888543 44434 46788888888888877443 3567888899999998886533 23344445667777
Q ss_pred cccccc
Q 003802 671 ETISAF 676 (794)
Q Consensus 671 ~~l~~~ 676 (794)
+.||..
T Consensus 143 k~LD~~ 148 (175)
T PF14580_consen 143 KVLDGQ 148 (175)
T ss_dssp SEETTE
T ss_pred heeCCE
Confidence 777654
No 40
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.97 E-value=1.3e-10 Score=110.14 Aligned_cols=197 Identities=18% Similarity=0.131 Sum_probs=107.6
Q ss_pred cccccCceeccCCCcCc--------cCCC-CCCCCCCCCEEecccccccccccccccCcccccccccccccccccccccc
Q 003802 420 KPLKELKFMNLSHSCNL--------IRTP-DFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNV 490 (794)
Q Consensus 420 ~~l~~L~~L~L~~n~~~--------~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~ 490 (794)
.-+.+|.+|..++..-- ...| ++.-+.+|..+.++.|.-. .+..-...-|.|+++.+.+.. +...|. +
T Consensus 179 df~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~-~i~~~~~~kptl~t~~v~~s~-~~~~~~-l 255 (490)
T KOG1259|consen 179 DFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTE-NIVDIELLKPTLQTICVHNTT-IQDVPS-L 255 (490)
T ss_pred HhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchh-heeceeecCchhheeeeeccc-cccccc-c
Confidence 33567777777654211 1111 2444667777777776421 121112223556666665422 211111 1
Q ss_pred CCCCCccEEEecC-CCCCCCCCccccCCCCCcEEEccCccCcccCcccccCCCCCEEEcCCCCCCCCccccccchhcccc
Q 003802 491 CLMKSLKILCLCG-CLKLEKLPQDLGEVECLEELDVGGTAIRQIPPSIVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLL 569 (794)
Q Consensus 491 ~~l~~L~~L~L~~-~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 569 (794)
--...+.-+.-.. ....|.....+.-...|+++|+|+|.|+.+..++.-.|.++.|++++|..
T Consensus 256 ~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i---------------- 319 (490)
T KOG1259|consen 256 LPETILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRI---------------- 319 (490)
T ss_pred cchhhhcCccCCCCCccCCceEEecchHhhhhhccccccchhhhhhhhhhccceeEEeccccce----------------
Confidence 1111111111100 01112222233344678888888888888877777777888888877762
Q ss_pred CCCCCCCccccCCCCCCCCCCCEEecCCCCCccCCCCccccCCCCCCeEeCCCCCCccCchhhhccCCCCEEecCCCc
Q 003802 570 PNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLPSSINQLLKLKILCLEKCR 647 (794)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~ 647 (794)
.....+..+++|+.||||+|.+.. +..|-..+-|.+.|.|++|.+.++. .+..+-+|..||+++|+
T Consensus 320 ---------~~v~nLa~L~~L~~LDLS~N~Ls~--~~Gwh~KLGNIKtL~La~N~iE~LS-GL~KLYSLvnLDl~~N~ 385 (490)
T KOG1259|consen 320 ---------RTVQNLAELPQLQLLDLSGNLLAE--CVGWHLKLGNIKTLKLAQNKIETLS-GLRKLYSLVNLDLSSNQ 385 (490)
T ss_pred ---------eeehhhhhcccceEeecccchhHh--hhhhHhhhcCEeeeehhhhhHhhhh-hhHhhhhheeccccccc
Confidence 223346666777777777776433 4445556667777777777777665 56777777777777775
No 41
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.94 E-value=2.5e-07 Score=98.85 Aligned_cols=272 Identities=16% Similarity=0.121 Sum_probs=142.7
Q ss_pred hhhhHhHhcC--CCCeEEEEEEccCCCcHHHHHHHHHHHhhcccc------ceEEEEechhhhcccChHHHHHHHHHHHh
Q 003802 2 EKMNGYLEAG--LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFE------ASSFLANVREVSVTRGLVPLQEQLLSEVL 73 (794)
Q Consensus 2 ~~l~~~l~~~--~~~~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 73 (794)
++|...+... ....+.+.|+|++|+|||++|+.+++.+.+..+ ..+|+.+ ........+...+..++.
T Consensus 25 ~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~----~~~~~~~~~~~~i~~~l~ 100 (365)
T TIGR02928 25 EELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNC----QILDTLYQVLVELANQLR 100 (365)
T ss_pred HHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEEC----CCCCCHHHHHHHHHHHHh
Confidence 3455555531 233467899999999999999999986643322 2455552 223344566777777753
Q ss_pred c--cc-cccccchhhhHHHHHHHhc--CCeEEEEEcCCCChH-----HHHHHhcCC--CCC-CCCCEEEEEeCChhhhhh
Q 003802 74 M--ER-DLIIWDVHKGINLIRWRLC--RKRVLVILDDVDQLE-----QLQALVGNH--DWF-GFGSRIIITSRDEHVLKS 140 (794)
Q Consensus 74 ~--~~-~~~~~~~~~~~~~l~~~l~--~~r~LlVlDd~~~~~-----~~~~l~~~~--~~~-~~gs~IlvTtR~~~v~~~ 140 (794)
. .. .....+.++....+.+.+. +++++||||+++... .+..+.... ... +....+|.++........
T Consensus 101 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n~~~~~~~ 180 (365)
T TIGR02928 101 GSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISNDLKFREN 180 (365)
T ss_pred hcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEECCcchHhh
Confidence 2 11 1111223344455555553 568899999998772 133333221 111 122344444543322111
Q ss_pred cC-------cCcEEEcCCCChHhHHHHHHhhccC---CCCCChhHHHHHHHHHHHhCCCchHHHHHhhhh---c---C--
Q 003802 141 HG-------VTNTYKVRGLDYVEALQLFHLKVSN---GKQPTDYRVELSKYVVNYAGGLPLAIEVLGSFL---C---G-- 202 (794)
Q Consensus 141 ~~-------~~~~~~l~~L~~~ea~~lf~~~~~~---~~~~~~~~~~~~~~i~~~~~g~Plai~~~a~~L---~---~-- 202 (794)
+. ....+.+.+.+.++..+++..++.. .....+...+...+++....|.|..+..+.... + +
T Consensus 181 l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~~a~~~~~~ 260 (365)
T TIGR02928 181 LDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGEIAEREGAE 260 (365)
T ss_pred cCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCC
Confidence 11 1246889999999999999988631 111222223344556667778885544332211 1 1
Q ss_pred -CChHHHHHHHHHHHcCCChhHHHHHHhhccCCChhhHhhhhhhccccc----CCCHHHHHH----hhhhcCCCc-----
Q 003802 203 -RSVEEWKSALNRLQEAPNEKVLKVLRISYDGLDRRDKEIFLDIACFFK----GKDEDRVRK----KLDSCGFNS----- 268 (794)
Q Consensus 203 -~~~~~w~~~l~~l~~~~~~~~~~~l~~sy~~L~~~~~~~~~~~s~fp~----~~~~~~l~~----~~~~~g~~~----- 268 (794)
-+.+..+.+.+.+. .....-.+..||.+.+..+..++..-+ .....++.. +....|..+
T Consensus 261 ~it~~~v~~a~~~~~-------~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ 333 (365)
T TIGR02928 261 RVTEDHVEKAQEKIE-------KDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYKEVCEDIGVDPLTQRR 333 (365)
T ss_pred CCCHHHHHHHHHHHH-------HHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhcCCCCCcHHH
Confidence 13444444444431 223344567888887766655442211 112222222 222223222
Q ss_pred -hhhHHHHhhcccceee
Q 003802 269 -DIGIRELLDKSLITIV 284 (794)
Q Consensus 269 -~~~l~~L~~~~ll~~~ 284 (794)
..++..|...|++...
T Consensus 334 ~~~~l~~l~~~gli~~~ 350 (365)
T TIGR02928 334 ISDLLNELDMLGLVEAE 350 (365)
T ss_pred HHHHHHHHHhcCCeEEE
Confidence 2347777778887765
No 42
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.94 E-value=1.2e-09 Score=109.85 Aligned_cols=277 Identities=21% Similarity=0.246 Sum_probs=179.7
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEEechhhhcccChHHHHHHHHHHHhccccccccchhhhHHHHHH
Q 003802 13 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRW 92 (794)
Q Consensus 13 ~~~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~ 92 (794)
+..|-+.++|.|||||||++-.+.. ++..|+..+|+.....++....+........ .... .+.+.....+..
T Consensus 12 ~~~RlvtL~g~ggvgkttl~~~~a~-~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~---gl~~----~~g~~~~~~~~~ 83 (414)
T COG3903 12 TALRLVTLTGAGGVGKTTLALQAAH-AASEYADGVAFVDLAPITDPALVFPTLAGAL---GLHV----QPGDSAVDTLVR 83 (414)
T ss_pred hhhheeeeeccCccceehhhhhhHh-HhhhcccceeeeeccccCchhHhHHHHHhhc---cccc----ccchHHHHHHHH
Confidence 4468999999999999999999999 8899998888776655554443333322222 1111 122233445566
Q ss_pred HhcCCeEEEEEcCCCChHH-HHHHhcCCCCCCCCCEEEEEeCChhhhhhcCcCcEEEcCCCChH-hHHHHHHhhccC---
Q 003802 93 RLCRKRVLVILDDVDQLEQ-LQALVGNHDWFGFGSRIIITSRDEHVLKSHGVTNTYKVRGLDYV-EALQLFHLKVSN--- 167 (794)
Q Consensus 93 ~l~~~r~LlVlDd~~~~~~-~~~l~~~~~~~~~gs~IlvTtR~~~v~~~~~~~~~~~l~~L~~~-ea~~lf~~~~~~--- 167 (794)
....+|.++|+||..+..+ -......+....+.-.|+.|+|.... ........+.+++.. ++.++|..++..
T Consensus 84 ~~~~rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l---~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~ 160 (414)
T COG3903 84 RIGDRRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAIL---VAGEVHRRVPSLSLFDEAIELFVCRAVLVAL 160 (414)
T ss_pred HHhhhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhc---ccccccccCCccccCCchhHHHHHHHHHhcc
Confidence 6678999999999987754 22222233223456678899987532 344556777777765 788888776521
Q ss_pred CCCCChhHHHHHHHHHHHhCCCchHHHHHhhhhcCCChHHHHHHHH----HHHcC------CChhHHHHHHhhccCCChh
Q 003802 168 GKQPTDYRVELSKYVVNYAGGLPLAIEVLGSFLCGRSVEEWKSALN----RLQEA------PNEKVLKVLRISYDGLDRR 237 (794)
Q Consensus 168 ~~~~~~~~~~~~~~i~~~~~g~Plai~~~a~~L~~~~~~~w~~~l~----~l~~~------~~~~~~~~l~~sy~~L~~~ 237 (794)
.-.........+.+|.++.+|.|++|..+++........+....+. .++.. ..+.....+..||.-|...
T Consensus 161 ~f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgw 240 (414)
T COG3903 161 SFWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGW 240 (414)
T ss_pred ceeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhH
Confidence 1122334557788999999999999999999887755544433333 23322 2356777899999999999
Q ss_pred hHhhhhhhcccccCCCHHHHHHhhhhcCCC---c----hhhHHHHhhcccceee----cCeehHHHHHHHHHHHHH
Q 003802 238 DKEIFLDIACFFKGKDEDRVRKKLDSCGFN---S----DIGIRELLDKSLITIV----NNKLWMHDLLQEMGWEIV 302 (794)
Q Consensus 238 ~~~~~~~~s~fp~~~~~~~l~~~~~~~g~~---~----~~~l~~L~~~~ll~~~----~~~~~mh~li~~~~~~~~ 302 (794)
.+-.|.-++.|...++.+. ..|.+.|-. + ...+..+++.+++.-. ...++.-+-.+.|+....
T Consensus 241 e~~~~~rLa~~~g~f~~~l--~~~~a~g~~~~~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~YalaeL 314 (414)
T COG3903 241 ERALFGRLAVFVGGFDLGL--ALAVAAGADVDVPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYALAEL 314 (414)
T ss_pred HHHHhcchhhhhhhhcccH--HHHHhcCCccccchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 9999999999988887652 222222221 2 2346667888876554 223555555555554433
No 43
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.94 E-value=1.3e-08 Score=105.48 Aligned_cols=243 Identities=14% Similarity=0.090 Sum_probs=128.3
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEEechhhhcccChHHHHHHHHHHHhccccccccch----hhhHHH
Q 003802 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDV----HKGINL 89 (794)
Q Consensus 14 ~~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~----~~~~~~ 89 (794)
..+.+.++|++|+|||+||+.+++.....+. ... ......... ....+..+....---..+. ....+.
T Consensus 29 ~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~---~~~-~~~~~~~~~----l~~~l~~~~~~~vl~iDEi~~l~~~~~e~ 100 (305)
T TIGR00635 29 ALDHLLLYGPPGLGKTTLAHIIANEMGVNLK---ITS-GPALEKPGD----LAAILTNLEEGDVLFIDEIHRLSPAVEEL 100 (305)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCCCEE---Eec-cchhcCchh----HHHHHHhcccCCEEEEehHhhhCHHHHHH
Confidence 3556889999999999999999997654321 111 000111111 1111111110000000000 011222
Q ss_pred HHHHhcCCeEEEEEcCCCChHHHHHHhcCCCCCCCCCEEEEEeCChhhhhhcC--cCcEEEcCCCChHhHHHHHHhhccC
Q 003802 90 IRWRLCRKRVLVILDDVDQLEQLQALVGNHDWFGFGSRIIITSRDEHVLKSHG--VTNTYKVRGLDYVEALQLFHLKVSN 167 (794)
Q Consensus 90 l~~~l~~~r~LlVlDd~~~~~~~~~l~~~~~~~~~gs~IlvTtR~~~v~~~~~--~~~~~~l~~L~~~ea~~lf~~~~~~ 167 (794)
+...+.+.+..+|+|+..+...+.. .. .+.+-|..||+...+...+. ....+++++++.++..+++.+.+..
T Consensus 101 l~~~~~~~~~~~v~~~~~~~~~~~~---~~---~~~~li~~t~~~~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~ 174 (305)
T TIGR00635 101 LYPAMEDFRLDIVIGKGPSARSVRL---DL---PPFTLVGATTRAGMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGL 174 (305)
T ss_pred hhHHHhhhheeeeeccCccccceee---cC---CCeEEEEecCCccccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHH
Confidence 3333444444455554433322211 11 23455666777654433221 2346789999999999999988743
Q ss_pred CCCCChhHHHHHHHHHHHhCCCchHHHHHhhhhcC---------CChHHHHHHHHHHHcCCChhHHHHHHhhccCCChhh
Q 003802 168 GKQPTDYRVELSKYVVNYAGGLPLAIEVLGSFLCG---------RSVEEWKSALNRLQEAPNEKVLKVLRISYDGLDRRD 238 (794)
Q Consensus 168 ~~~~~~~~~~~~~~i~~~~~g~Plai~~~a~~L~~---------~~~~~w~~~l~~l~~~~~~~~~~~l~~sy~~L~~~~ 238 (794)
.. ....++....|++.|+|.|..+..++..+.. -+.+..+ .....+...|..+++..
T Consensus 175 ~~--~~~~~~al~~ia~~~~G~pR~~~~ll~~~~~~a~~~~~~~it~~~v~------------~~l~~l~~~~~~l~~~~ 240 (305)
T TIGR00635 175 LN--VEIEPEAALEIARRSRGTPRIANRLLRRVRDFAQVRGQKIINRDIAL------------KALEMLMIDELGLDEID 240 (305)
T ss_pred hC--CCcCHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHcCCCCcCHHHHH------------HHHHHhCCCCCCCCHHH
Confidence 22 2233467789999999999776555443210 0111111 11222455678888887
Q ss_pred Hhhhh-hhcccccC-CCHHHHHHhhhhcCCCchhhHH-HHhhcccceee
Q 003802 239 KEIFL-DIACFFKG-KDEDRVRKKLDSCGFNSDIGIR-ELLDKSLITIV 284 (794)
Q Consensus 239 ~~~~~-~~s~fp~~-~~~~~l~~~~~~~g~~~~~~l~-~L~~~~ll~~~ 284 (794)
+..+. ..+.+..+ ...+.+...+.......+..++ .|++.+|+...
T Consensus 241 ~~~L~al~~~~~~~~~~~~~ia~~lg~~~~~~~~~~e~~Li~~~li~~~ 289 (305)
T TIGR00635 241 RKLLSVLIEQFQGGPVGLKTLAAALGEDADTIEDVYEPYLLQIGFLQRT 289 (305)
T ss_pred HHHHHHHHHHhCCCcccHHHHHHHhCCCcchHHHhhhHHHHHcCCcccC
Confidence 76655 44555433 4556666555444444455567 69999999654
No 44
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.93 E-value=5.2e-09 Score=104.30 Aligned_cols=189 Identities=21% Similarity=0.281 Sum_probs=93.9
Q ss_pred hhhhHhHhcCCCCeEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEEechhhhcccChHHH------HHHHHHHHhcc
Q 003802 2 EKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPL------QEQLLSEVLME 75 (794)
Q Consensus 2 ~~l~~~l~~~~~~~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~------~~~i~~~~~~~ 75 (794)
++|.+++..+ ..+.+.|+|+.|+|||+|++++.+..++.-..++|+........ ...... ...+...+...
T Consensus 9 ~~l~~~l~~~--~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~ 85 (234)
T PF01637_consen 9 EKLKELLESG--PSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNE-SSLRSFIEETSLADELSEALGIS 85 (234)
T ss_dssp HHHHHCHHH----SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHH-HHHHHHHHHHHHHCHCHHHHHHH
T ss_pred HHHHHHHHhh--cCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhh-hHHHHHHHHHHHHHHHHHHHhhh
Confidence 4455555543 34688899999999999999999977544334555442211110 011111 11111111111
Q ss_pred c---cc------cccchhhhHHHHHHHhc--CCeEEEEEcCCCChH-----------HHHHHhcCCCCCCCCCEEEEEeC
Q 003802 76 R---DL------IIWDVHKGINLIRWRLC--RKRVLVILDDVDQLE-----------QLQALVGNHDWFGFGSRIIITSR 133 (794)
Q Consensus 76 ~---~~------~~~~~~~~~~~l~~~l~--~~r~LlVlDd~~~~~-----------~~~~l~~~~~~~~~gs~IlvTtR 133 (794)
. .. ...........+.+.++ +++.+||+||++... .+..+...... .....++++..
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~v~~~S 164 (234)
T PF01637_consen 86 IPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLS-QQNVSIVITGS 164 (234)
T ss_dssp CCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH-----TTEEEEEEES
T ss_pred cccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccc-cCCceEEEECC
Confidence 0 00 11122233344444443 345999999996655 12233333222 23334555555
Q ss_pred Chhhhhh--------cCcCcEEEcCCCChHhHHHHHHhhccCCCCCChhHHHHHHHHHHHhCCCchHHHH
Q 003802 134 DEHVLKS--------HGVTNTYKVRGLDYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIEV 195 (794)
Q Consensus 134 ~~~v~~~--------~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 195 (794)
...+... .+....+.+++++.+++++++...+...... +...+..++|+..++|+|..|..
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 165 SDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKELIKL-PFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp SHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC-------HHHHHHHHHHHTT-HHHHHH
T ss_pred chHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHhhcc-cCCHHHHHHHHHHhCCCHHHHhc
Confidence 5444433 2233469999999999999999976333111 23456679999999999988764
No 45
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.92 E-value=7.7e-09 Score=107.79 Aligned_cols=153 Identities=14% Similarity=0.058 Sum_probs=90.0
Q ss_pred CCEEEEEeCChhhhhhcC--cCcEEEcCCCChHhHHHHHHhhccCCCCCChhHHHHHHHHHHHhCCCchHHHHHhhhhcC
Q 003802 125 GSRIIITSRDEHVLKSHG--VTNTYKVRGLDYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIEVLGSFLCG 202 (794)
Q Consensus 125 gs~IlvTtR~~~v~~~~~--~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~a~~L~~ 202 (794)
.+-|..|+|...+...+. ....+++++++.++..+++.+.+.... ....++.+..|++.|+|.|..+..+...+.
T Consensus 151 ~~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~--~~~~~~~~~~ia~~~~G~pR~a~~~l~~~~- 227 (328)
T PRK00080 151 FTLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILG--VEIDEEGALEIARRSRGTPRIANRLLRRVR- 227 (328)
T ss_pred ceEEeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcC--CCcCHHHHHHHHHHcCCCchHHHHHHHHHH-
Confidence 455666777554433221 134689999999999999998874322 223446788999999999966555444321
Q ss_pred CChHHHHHHHH--HHHcCCChhHHHHHHhhccCCChhhHhhhh-hhcccccC-CCHHHHHHhhhhcCCCchhhHH-HHhh
Q 003802 203 RSVEEWKSALN--RLQEAPNEKVLKVLRISYDGLDRRDKEIFL-DIACFFKG-KDEDRVRKKLDSCGFNSDIGIR-ELLD 277 (794)
Q Consensus 203 ~~~~~w~~~l~--~l~~~~~~~~~~~l~~sy~~L~~~~~~~~~-~~s~fp~~-~~~~~l~~~~~~~g~~~~~~l~-~L~~ 277 (794)
.|..... .+...........+...+..|++..+..+. ....|+.+ ...+.+...+.......+..++ .|++
T Consensus 228 ----~~a~~~~~~~I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~a~~lg~~~~~~~~~~e~~Li~ 303 (328)
T PRK00080 228 ----DFAQVKGDGVITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGGPVGLDTLAAALGEERDTIEDVYEPYLIQ 303 (328)
T ss_pred ----HHHHHcCCCCCCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCCceeHHHHHHHHCCCcchHHHHhhHHHHH
Confidence 1111000 000000122334456677788888777664 55556544 3566666665444443444566 8999
Q ss_pred cccceee
Q 003802 278 KSLITIV 284 (794)
Q Consensus 278 ~~ll~~~ 284 (794)
.+|++..
T Consensus 304 ~~li~~~ 310 (328)
T PRK00080 304 QGFIQRT 310 (328)
T ss_pred cCCcccC
Confidence 9998654
No 46
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.89 E-value=1.2e-09 Score=100.20 Aligned_cols=105 Identities=25% Similarity=0.231 Sum_probs=27.0
Q ss_pred cCCCCcEEEEcCcccCCC--ccccccCcceeeeecCCCCCCCCCCCCCCceEEEcCCCCcccccccc-cccccCceeccC
Q 003802 355 TMSNLRLLEINNLYSSGN--LEYLSNNLRYLKWHEYPFNSLPVSFRPEKLFKLNLCNSRIKYLWKGI-KPLKELKFMNLS 431 (794)
Q Consensus 355 ~~~~L~~L~l~~n~~~~~--~~~~~~~l~~L~~~~~~~~~l~~~~~~~~L~~L~L~~n~i~~l~~~~-~~l~~L~~L~L~ 431 (794)
+..+++.|+|.+|.++.. +...+.+++.|++.+|.+.++++...+++|++|++++|.|+.+.+.+ ..+++|++|+++
T Consensus 17 n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~ 96 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLS 96 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-T
T ss_pred cccccccccccccccccccchhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEECc
Confidence 344556666666655432 11123344444444444455544444556666666666666665443 346666666666
Q ss_pred CCcCccCCC--CCCCCCCCCEEeccccccc
Q 003802 432 HSCNLIRTP--DFTGVPNLERLNLEGCTRL 459 (794)
Q Consensus 432 ~n~~~~~~~--~~~~l~~L~~L~l~~~~~~ 459 (794)
+|.+..... .+..+++|++|++.+|.+.
T Consensus 97 ~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 97 NNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp TS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred CCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 665533221 2445566666666665543
No 47
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.88 E-value=1.6e-08 Score=101.00 Aligned_cols=151 Identities=22% Similarity=0.295 Sum_probs=96.1
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEEechhhhcccChHHHHHHHHHHHhccccccccchhhhHHHHHH
Q 003802 13 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRW 92 (794)
Q Consensus 13 ~~~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~ 92 (794)
+.+.-..+||++|+||||||+.++......|... +....-.+-.++++... -+.
T Consensus 46 ~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~---------sAv~~gvkdlr~i~e~a-----------------~~~ 99 (436)
T COG2256 46 GHLHSMILWGPPGTGKTTLARLIAGTTNAAFEAL---------SAVTSGVKDLREIIEEA-----------------RKN 99 (436)
T ss_pred CCCceeEEECCCCCCHHHHHHHHHHhhCCceEEe---------ccccccHHHHHHHHHHH-----------------HHH
Confidence 3466677999999999999999999877665432 11111112223333220 011
Q ss_pred HhcCCeEEEEEcCCCCh--HHHHHHhcCCCCCCCCCEEEE--EeCChhh---hhhcCcCcEEEcCCCChHhHHHHHHhhc
Q 003802 93 RLCRKRVLVILDDVDQL--EQLQALVGNHDWFGFGSRIII--TSRDEHV---LKSHGVTNTYKVRGLDYVEALQLFHLKV 165 (794)
Q Consensus 93 ~l~~~r~LlVlDd~~~~--~~~~~l~~~~~~~~~gs~Ilv--TtR~~~v---~~~~~~~~~~~l~~L~~~ea~~lf~~~~ 165 (794)
...+++.+|++|.+... .+.+.+++.. ..|..|+| ||.++.. ....+...++++++|+.++..+++.+.+
T Consensus 100 ~~~gr~tiLflDEIHRfnK~QQD~lLp~v---E~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~ 176 (436)
T COG2256 100 RLLGRRTILFLDEIHRFNKAQQDALLPHV---ENGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLLKRAL 176 (436)
T ss_pred HhcCCceEEEEehhhhcChhhhhhhhhhh---cCCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHHHHHHHH
Confidence 23489999999999544 5577777765 47887777 5554321 2233456689999999999999999844
Q ss_pred cCC-CCCC----hhHHHHHHHHHHHhCCCchH
Q 003802 166 SNG-KQPT----DYRVELSKYVVNYAGGLPLA 192 (794)
Q Consensus 166 ~~~-~~~~----~~~~~~~~~i~~~~~g~Pla 192 (794)
... .... ...++..+.+++.++|--.+
T Consensus 177 ~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~ 208 (436)
T COG2256 177 LDEERGLGGQIIVLDEEALDYLVRLSNGDARR 208 (436)
T ss_pred hhhhcCCCcccccCCHHHHHHHHHhcCchHHH
Confidence 221 1111 12345677788888886544
No 48
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.85 E-value=3.2e-10 Score=110.39 Aligned_cols=189 Identities=17% Similarity=0.197 Sum_probs=121.2
Q ss_pred ccccccCceeccCCCcCccCCCC-----CCCCCCCCEEeccccccccc-------------ccccccCcccccccccccc
Q 003802 419 IKPLKELKFMNLSHSCNLIRTPD-----FTGVPNLERLNLEGCTRLLE-------------VHQSVGTLKRLILLNLKDC 480 (794)
Q Consensus 419 ~~~l~~L~~L~L~~n~~~~~~~~-----~~~l~~L~~L~l~~~~~~~~-------------~~~~~~~l~~L~~L~l~~n 480 (794)
+..+++|++|+||+|-+....+. +.++..|++|.|.+|.+... ....+..-++|+.+....|
T Consensus 88 L~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN 167 (382)
T KOG1909|consen 88 LLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN 167 (382)
T ss_pred HhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc
Confidence 44455666666666655433321 44566677777766654321 1122344577888888887
Q ss_pred ccccc----cccccCCCCCccEEEecCCCCCCC----CCccccCCCCCcEEEccCccCc-----ccCcccccCCCCCEEE
Q 003802 481 RNLVS----FPKNVCLMKSLKILCLCGCLKLEK----LPQDLGEVECLEELDVGGTAIR-----QIPPSIVQLVNLKIFS 547 (794)
Q Consensus 481 ~~~~~----~~~~~~~l~~L~~L~L~~~~~~~~----~~~~~~~l~~L~~L~l~~~~l~-----~l~~~l~~l~~L~~L~ 547 (794)
+.... +...+...+.|+.+.+..|.+... +...+..+++|+.|||.+|.++ .+...+..+++|+.|+
T Consensus 168 rlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~ 247 (382)
T KOG1909|consen 168 RLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELN 247 (382)
T ss_pred ccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeec
Confidence 65322 334456678889998888776532 2345788999999999999887 3445667788999999
Q ss_pred cCCCCCCCCccccccchhccccCCCCCCCccccCCC-CCCCCCCCEEecCCCCCccCC---CCccccCCCCCCeEeCCCC
Q 003802 548 LHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPR-FTGLSSLQTLDLSDCNLLEGA---IPSDIGSLFSLEAIDLSGN 623 (794)
Q Consensus 548 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~~L~l~~n~~~~~~---~~~~~~~l~~L~~L~L~~n 623 (794)
++.|.......... ... -...++|+.|.+.+|.+..+. +.......+.|+.|+|++|
T Consensus 248 l~dcll~~~Ga~a~-------------------~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN 308 (382)
T KOG1909|consen 248 LGDCLLENEGAIAF-------------------VDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGN 308 (382)
T ss_pred ccccccccccHHHH-------------------HHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcc
Confidence 99987322211110 011 124689999999999854321 2233456889999999999
Q ss_pred CCc
Q 003802 624 NFF 626 (794)
Q Consensus 624 ~l~ 626 (794)
.+.
T Consensus 309 ~l~ 311 (382)
T KOG1909|consen 309 RLG 311 (382)
T ss_pred ccc
Confidence 983
No 49
>PRK06893 DNA replication initiation factor; Validated
Probab=98.80 E-value=4.3e-08 Score=96.11 Aligned_cols=150 Identities=13% Similarity=0.160 Sum_probs=93.0
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEEechhhhcccChHHHHHHHHHHHhccccccccchhhhHHHHHHHh
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWRL 94 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l 94 (794)
.+.+.|+|++|+|||+||+.+++.+......+.|+. ..... ....+ +.+.+
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~----~~~~~---~~~~~----------------------~~~~~ 89 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIP----LSKSQ---YFSPA----------------------VLENL 89 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEee----HHHhh---hhhHH----------------------HHhhc
Confidence 467899999999999999999997665555667776 21100 00001 11112
Q ss_pred cCCeEEEEEcCCCCh---HHHHH-HhcCCCC-CCCCCEEEE-EeCC---------hhhhhhcCcCcEEEcCCCChHhHHH
Q 003802 95 CRKRVLVILDDVDQL---EQLQA-LVGNHDW-FGFGSRIII-TSRD---------EHVLKSHGVTNTYKVRGLDYVEALQ 159 (794)
Q Consensus 95 ~~~r~LlVlDd~~~~---~~~~~-l~~~~~~-~~~gs~Ilv-TtR~---------~~v~~~~~~~~~~~l~~L~~~ea~~ 159 (794)
+ +.-+||+||++.. ..|+. +...+.. ...|..++| |++. +.+...+.....++++++++++.++
T Consensus 90 ~-~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~ 168 (229)
T PRK06893 90 E-QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKII 168 (229)
T ss_pred c-cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHH
Confidence 1 2348999999764 33442 2221111 123555554 4443 2444555556689999999999999
Q ss_pred HHHhhccCCCCCChhHHHHHHHHHHHhCCCchHHHHH
Q 003802 160 LFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIEVL 196 (794)
Q Consensus 160 lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 196 (794)
++++.+.... ....+++..-|++++.|..-.+..+
T Consensus 169 iL~~~a~~~~--l~l~~~v~~~L~~~~~~d~r~l~~~ 203 (229)
T PRK06893 169 VLQRNAYQRG--IELSDEVANFLLKRLDRDMHTLFDA 203 (229)
T ss_pred HHHHHHHHcC--CCCCHHHHHHHHHhccCCHHHHHHH
Confidence 9998885332 2233467788888888776665543
No 50
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.70 E-value=1.3e-07 Score=93.54 Aligned_cols=161 Identities=17% Similarity=0.224 Sum_probs=93.2
Q ss_pred hhhHhHhcCCCCeEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEEechhhhcccChHHHHHHHHHHHhccccccccc
Q 003802 3 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWD 82 (794)
Q Consensus 3 ~l~~~l~~~~~~~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 82 (794)
++.+++.. ...+.|.|+|+.|+|||++|+.+++...+.....+++++. ... .....+.
T Consensus 28 ~l~~~~~~--~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~-~~~------~~~~~~~------------- 85 (226)
T TIGR03420 28 ALRQLAAG--KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLA-ELA------QADPEVL------------- 85 (226)
T ss_pred HHHHHHhc--CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHH-HHH------HhHHHHH-------------
Confidence 44455432 3456888999999999999999999765554555666521 111 0000111
Q ss_pred hhhhHHHHHHHhcCCeEEEEEcCCCChH---HH-HHHhcCCCC-CCCCCEEEEEeCChh---------hhhhcCcCcEEE
Q 003802 83 VHKGINLIRWRLCRKRVLVILDDVDQLE---QL-QALVGNHDW-FGFGSRIIITSRDEH---------VLKSHGVTNTYK 148 (794)
Q Consensus 83 ~~~~~~~l~~~l~~~r~LlVlDd~~~~~---~~-~~l~~~~~~-~~~gs~IlvTtR~~~---------v~~~~~~~~~~~ 148 (794)
+.+++ .-+|||||++... .| +.+...+.. ...+.+||+|++... +...+.....++
T Consensus 86 ---------~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~~~i~ 155 (226)
T TIGR03420 86 ---------EGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQ 155 (226)
T ss_pred ---------hhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcCeeEe
Confidence 11222 2389999997553 22 223222111 123457888887532 111222245789
Q ss_pred cCCCChHhHHHHHHhhccCCCCCChhHHHHHHHHHHHhCCCchHHHHHh
Q 003802 149 VRGLDYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIEVLG 197 (794)
Q Consensus 149 l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~a 197 (794)
+.++++++...++...+.... ....++..+.|++.+.|.|..+..+.
T Consensus 156 l~~l~~~e~~~~l~~~~~~~~--~~~~~~~l~~L~~~~~gn~r~L~~~l 202 (226)
T TIGR03420 156 LPPLSDEEKIAALQSRAARRG--LQLPDEVADYLLRHGSRDMGSLMALL 202 (226)
T ss_pred cCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHhccCCHHHHHHHH
Confidence 999999999999877542111 12233556777778888887766553
No 51
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.69 E-value=1.9e-09 Score=116.42 Aligned_cols=58 Identities=28% Similarity=0.362 Sum_probs=25.7
Q ss_pred CCCccEEEecCCCCCCCCCccccCCCCCcEEEccCccCcccCcc-cccCCCCCEEEcCCCC
Q 003802 493 MKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPPS-IVQLVNLKIFSLHGCK 552 (794)
Q Consensus 493 l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~-l~~l~~L~~L~l~~~~ 552 (794)
++.|+.|++++|.+... ..+..+++|+.+++++|.+..+... ...+.+|+.+++.+|.
T Consensus 139 l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 139 LTLLKELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNS 197 (414)
T ss_pred ccchhhheeccCcchhc--cCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCc
Confidence 33344444444443321 1233344555555555555444332 3444555555555544
No 52
>PF13173 AAA_14: AAA domain
Probab=98.69 E-value=7.3e-08 Score=85.12 Aligned_cols=120 Identities=20% Similarity=0.202 Sum_probs=78.6
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEEechhhhcccChHHHHHHHHHHHhccccccccchhhhHHHHHHHh
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWRL 94 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l 94 (794)
.+++.|.|+.|+||||+++++++... .-..++|++.... ... ..... + ..+.+.+..
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi~~~~~----~~~-----~~~~~------------~-~~~~~~~~~ 58 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL-PPENILYINFDDP----RDR-----RLADP------------D-LLEYFLELI 58 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc-ccccceeeccCCH----HHH-----HHhhh------------h-hHHHHHHhh
Confidence 36899999999999999999998765 3345666652111 110 00000 0 123333333
Q ss_pred cCCeEEEEEcCCCChHHHHHHhcCCCCCCCCCEEEEEeCChhhhhh------cCcCcEEEcCCCChHhH
Q 003802 95 CRKRVLVILDDVDQLEQLQALVGNHDWFGFGSRIIITSRDEHVLKS------HGVTNTYKVRGLDYVEA 157 (794)
Q Consensus 95 ~~~r~LlVlDd~~~~~~~~~l~~~~~~~~~gs~IlvTtR~~~v~~~------~~~~~~~~l~~L~~~ea 157 (794)
..++.++|||++....+|......+.+..+..+|++|+........ .+....+++.||+-.|.
T Consensus 59 ~~~~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 59 KPGKKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred ccCCcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 3478889999999988888777766655567899999998655432 12234678999987763
No 53
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.68 E-value=2.2e-09 Score=115.88 Aligned_cols=218 Identities=28% Similarity=0.262 Sum_probs=151.9
Q ss_pred CCCCceEEEcCCCCcccccccccccccCceeccCCCcCccCCCCCCCCCCCCEEecccccccccccccccCccccccccc
Q 003802 398 RPEKLFKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNL 477 (794)
Q Consensus 398 ~~~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 477 (794)
.+..++.++++.|.|..+-..+..+++|+.|++.+|.+......+..+++|++|++++|.+.... .+..++.|+.|++
T Consensus 70 ~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l 147 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNL 147 (414)
T ss_pred HhHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheecccccccccc--chhhccchhhhee
Confidence 35577788899999988666688899999999999977666555888999999999998876554 5677788999999
Q ss_pred cccccccccccccCCCCCccEEEecCCCCCCCCC-ccccCCCCCcEEEccCccCcccCcccccCCCCCEEEcCCCCCCCC
Q 003802 478 KDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLP-QDLGEVECLEELDVGGTAIRQIPPSIVQLVNLKIFSLHGCKGQPP 556 (794)
Q Consensus 478 ~~n~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~-~~~~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~ 556 (794)
++|.+... ..+..+.+|+.+++++|.+...-+ . ...+.+++.+.+.+|.+..+. .+..+..+..+++..|...
T Consensus 148 ~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~-~~~~~~~l~~~~l~~n~i~-- 221 (414)
T KOG0531|consen 148 SGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIE-GLDLLKKLVLLSLLDNKIS-- 221 (414)
T ss_pred ccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhccc-chHHHHHHHHhhcccccce--
Confidence 99885432 235568999999999988776544 2 578889999999999887653 3334444444455555411
Q ss_pred ccccccchhccccCCCCCCCccccCCCCCCCCC--CCEEecCCCCCccCCCCccccCCCCCCeEeCCCCCCccCchhhhc
Q 003802 557 KILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSS--LQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLPSSINQ 634 (794)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~ 634 (794)
.+..+..+.. |+.+++++|.+.. .+..+..+..+..|++.+|++..+. .+..
T Consensus 222 -----------------------~~~~l~~~~~~~L~~l~l~~n~i~~--~~~~~~~~~~l~~l~~~~n~~~~~~-~~~~ 275 (414)
T KOG0531|consen 222 -----------------------KLEGLNELVMLHLRELYLSGNRISR--SPEGLENLKNLPVLDLSSNRISNLE-GLER 275 (414)
T ss_pred -----------------------eccCcccchhHHHHHHhcccCcccc--ccccccccccccccchhhccccccc-cccc
Confidence 1112222222 7788888887433 3355667777788888877776554 3445
Q ss_pred cCCCCEEecCCCcCC
Q 003802 635 LLKLKILCLEKCRNL 649 (794)
Q Consensus 635 l~~L~~L~L~~n~~~ 649 (794)
.+.+..+....++..
T Consensus 276 ~~~~~~~~~~~~~~~ 290 (414)
T KOG0531|consen 276 LPKLSELWLNDNKLA 290 (414)
T ss_pred cchHHHhccCcchhc
Confidence 556666666666543
No 54
>PLN03150 hypothetical protein; Provisional
Probab=98.67 E-value=2.7e-08 Score=112.41 Aligned_cols=106 Identities=18% Similarity=0.270 Sum_probs=90.4
Q ss_pred CCCEEecccccccccccccccCccccccccccccccccccccccCCCCCccEEEecCCCCCCCCCccccCCCCCcEEEcc
Q 003802 447 NLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVG 526 (794)
Q Consensus 447 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~ 526 (794)
.++.|+|++|.+.+.+|..++.+++|+.|+|++|.+.+.+|..++.+++|+.|+|++|.+.+.+|..++++++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 37788899988888888889999999999999988888888888999999999999999988889889999999999999
Q ss_pred CccCc-ccCcccccC-CCCCEEEcCCCC
Q 003802 527 GTAIR-QIPPSIVQL-VNLKIFSLHGCK 552 (794)
Q Consensus 527 ~~~l~-~l~~~l~~l-~~L~~L~l~~~~ 552 (794)
+|.++ .+|..+... .++..+++.+|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCc
Confidence 99887 788777653 466778887775
No 55
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.64 E-value=1.6e-07 Score=83.73 Aligned_cols=114 Identities=21% Similarity=0.258 Sum_probs=74.9
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHHHhhcc-----ccceEEEEechhhhcccChHHHHHHHHHHHhccccccccchhhhHH
Q 003802 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQ-----FEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGIN 88 (794)
Q Consensus 14 ~~~vi~i~G~~GvGKTtLa~~v~~~~~~~-----f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 88 (794)
+.+++.|+|++|+|||++++++++..... -..++|+. +........+.+.++..+...... ..+.++..+
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~i~~~l~~~~~~-~~~~~~l~~ 77 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVN----CPSSRTPRDFAQEILEALGLPLKS-RQTSDELRS 77 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEE----HHHHSSHHHHHHHHHHHHT-SSSS-TS-HHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEE----eCCCCCHHHHHHHHHHHhCccccc-cCCHHHHHH
Confidence 35789999999999999999999966443 34456776 455557788888888886655443 344556667
Q ss_pred HHHHHhcCC-eEEEEEcCCCCh-H--HHHHHhcCCCCCCCCCEEEEEeCC
Q 003802 89 LIRWRLCRK-RVLVILDDVDQL-E--QLQALVGNHDWFGFGSRIIITSRD 134 (794)
Q Consensus 89 ~l~~~l~~~-r~LlVlDd~~~~-~--~~~~l~~~~~~~~~gs~IlvTtR~ 134 (794)
.+.+.+... ..+||+|+++.. . .++.+..... ..+.+||+..+.
T Consensus 78 ~~~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 78 LLIDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHHHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 777777654 459999999876 3 2444433333 566778877765
No 56
>PLN03150 hypothetical protein; Provisional
Probab=98.64 E-value=4.1e-08 Score=110.98 Aligned_cols=105 Identities=22% Similarity=0.268 Sum_probs=74.5
Q ss_pred CceeccCCCcCccCCCC-CCCCCCCCEEecccccccccccccccCccccccccccccccccccccccCCCCCccEEEecC
Q 003802 425 LKFMNLSHSCNLIRTPD-FTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCG 503 (794)
Q Consensus 425 L~~L~L~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~ 503 (794)
++.|+|++|.+....|. +..+++|+.|+|++|.+.+.+|..++.+++|+.|+|++|.+.+.+|..++++++|++|+|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 56667777766655554 66777777777777777777777777777777777777777777777777777777777777
Q ss_pred CCCCCCCCccccCC-CCCcEEEccCcc
Q 003802 504 CLKLEKLPQDLGEV-ECLEELDVGGTA 529 (794)
Q Consensus 504 ~~~~~~~~~~~~~l-~~L~~L~l~~~~ 529 (794)
|.+.+.+|..++.+ .++..+++.+|.
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCc
Confidence 77777777766543 356667777664
No 57
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=6.9e-10 Score=105.29 Aligned_cols=153 Identities=24% Similarity=0.244 Sum_probs=94.0
Q ss_pred CceEEEcCCCCcc--cccccccccccCceeccCCCcCccCCCC-CCCCCCCCEEecccccccccc--cccccCccccccc
Q 003802 401 KLFKLNLCNSRIK--YLWKGIKPLKELKFMNLSHSCNLIRTPD-FTGVPNLERLNLEGCTRLLEV--HQSVGTLKRLILL 475 (794)
Q Consensus 401 ~L~~L~L~~n~i~--~l~~~~~~l~~L~~L~L~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~--~~~~~~l~~L~~L 475 (794)
.|++|||++..|+ ++..-++++.+|+.|.|.++.+...+.. +.+-.+|+.|+|+.|.-.+.. .-.+.+|+.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 6899999999887 4555578899999999999877665544 778889999999998654432 2345778888888
Q ss_pred cccccccccccccc-cC-CCCCccEEEecCCCCCC---CCCccccCCCCCcEEEccCcc-Cc-ccCcccccCCCCCEEEc
Q 003802 476 NLKDCRNLVSFPKN-VC-LMKSLKILCLCGCLKLE---KLPQDLGEVECLEELDVGGTA-IR-QIPPSIVQLVNLKIFSL 548 (794)
Q Consensus 476 ~l~~n~~~~~~~~~-~~-~l~~L~~L~L~~~~~~~---~~~~~~~~l~~L~~L~l~~~~-l~-~l~~~l~~l~~L~~L~l 548 (794)
+++.|......-.. +. --.+|+.|+|+|+...- .+..-...+++|.+|||++|. ++ ..-..+.+++.|++|.+
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 88888764432111 11 12466777777754221 111112345566666666543 22 22223344455555555
Q ss_pred CCCCC
Q 003802 549 HGCKG 553 (794)
Q Consensus 549 ~~~~~ 553 (794)
+.|.+
T Consensus 346 sRCY~ 350 (419)
T KOG2120|consen 346 SRCYD 350 (419)
T ss_pred hhhcC
Confidence 55443
No 58
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.59 E-value=1.7e-06 Score=100.39 Aligned_cols=205 Identities=18% Similarity=0.247 Sum_probs=126.6
Q ss_pred cCCeEEEEEcCCCChHH-----HHHHhcCCC--CC-CCCCEEEEEeCCh--hhhhhcCcCcEEEcCCCChHhHHHHHHhh
Q 003802 95 CRKRVLVILDDVDQLEQ-----LQALVGNHD--WF-GFGSRIIITSRDE--HVLKSHGVTNTYKVRGLDYVEALQLFHLK 164 (794)
Q Consensus 95 ~~~r~LlVlDd~~~~~~-----~~~l~~~~~--~~-~~gs~IlvTtR~~--~v~~~~~~~~~~~l~~L~~~ea~~lf~~~ 164 (794)
+.++.++|+||+...+. ++.+..... .. .+..-.+.|.+.. .+-........+.|.||+..+...+....
T Consensus 152 ~~~plVi~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~ 231 (849)
T COG3899 152 EEHPLVIVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAAT 231 (849)
T ss_pred ccCCeEEEEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHH
Confidence 35699999999955443 333333221 00 0112233333432 11122234468999999999999999988
Q ss_pred ccCCCCCChhHHHHHHHHHHHhCCCchHHHHHhhhhcCC-------ChHHHHHHHHHHHcCC-ChhHHHHHHhhccCCCh
Q 003802 165 VSNGKQPTDYRVELSKYVVNYAGGLPLAIEVLGSFLCGR-------SVEEWKSALNRLQEAP-NEKVLKVLRISYDGLDR 236 (794)
Q Consensus 165 ~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~a~~L~~~-------~~~~w~~~l~~l~~~~-~~~~~~~l~~sy~~L~~ 236 (794)
...... ...+..+.|.++..|+|+.+..+...+... +...|......+.... .+.+...+..-.+.||.
T Consensus 232 l~~~~~---~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~~~~~~~vv~~l~~rl~kL~~ 308 (849)
T COG3899 232 LGCTKL---LPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGILATTDAVVEFLAARLQKLPG 308 (849)
T ss_pred hCCccc---ccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCCchhhHHHHHHHHHHHhcCCH
Confidence 744222 223567889999999999999998887652 3345554444433322 23456678888999999
Q ss_pred hhHhhhhhhcccccCCCHHHHHHhhhhcCCCchhhHHHHhhcccceee-----------cC-eehHHHHHHHHHHHHH
Q 003802 237 RDKEIFLDIACFFKGKDEDRVRKKLDSCGFNSDIGIRELLDKSLITIV-----------NN-KLWMHDLLQEMGWEIV 302 (794)
Q Consensus 237 ~~~~~~~~~s~fp~~~~~~~l~~~~~~~g~~~~~~l~~L~~~~ll~~~-----------~~-~~~mh~li~~~~~~~~ 302 (794)
..|+.+...|++...++.+-+..++.......-..+-.....+++.+. .. +-..|+.+++.+....
T Consensus 309 ~t~~Vl~~AA~iG~~F~l~~La~l~~~~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~vqqaaY~~i 386 (849)
T COG3899 309 TTREVLKAAACIGNRFDLDTLAALAEDSPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDRVQQAAYNLI 386 (849)
T ss_pred HHHHHHHHHHHhCccCCHHHHHHHHhhchHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHHHHHHHhccC
Confidence 999999999999999998888877754322222223333344444432 11 2256777777765543
No 59
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.55 E-value=9.2e-07 Score=86.80 Aligned_cols=160 Identities=14% Similarity=0.259 Sum_probs=98.6
Q ss_pred hHhHhcCCCCeEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEEechhhhcccChHHHHHHHHHHHhccccccccchh
Q 003802 5 NGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVH 84 (794)
Q Consensus 5 ~~~l~~~~~~~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 84 (794)
.++++. +..+-+.+||++|+||||||+.++..-+.+- ..||..........++ ++++++.
T Consensus 154 rs~ieq--~~ipSmIlWGppG~GKTtlArlia~tsk~~S--yrfvelSAt~a~t~dv----R~ife~a------------ 213 (554)
T KOG2028|consen 154 RSLIEQ--NRIPSMILWGPPGTGKTTLARLIASTSKKHS--YRFVELSATNAKTNDV----RDIFEQA------------ 213 (554)
T ss_pred HHHHHc--CCCCceEEecCCCCchHHHHHHHHhhcCCCc--eEEEEEeccccchHHH----HHHHHHH------------
Confidence 344444 3567788999999999999999999655442 4455522222222233 3444331
Q ss_pred hhHHHHHHHhcCCeEEEEEcCCCCh--HHHHHHhcCCCCCCCCCEEEE--EeCChhh---hhhcCcCcEEEcCCCChHhH
Q 003802 85 KGINLIRWRLCRKRVLVILDDVDQL--EQLQALVGNHDWFGFGSRIII--TSRDEHV---LKSHGVTNTYKVRGLDYVEA 157 (794)
Q Consensus 85 ~~~~~l~~~l~~~r~LlVlDd~~~~--~~~~~l~~~~~~~~~gs~Ilv--TtR~~~v---~~~~~~~~~~~l~~L~~~ea 157 (794)
+-...+.++|.+|++|.+... .+.+.+++.. .+|..++| ||.+... +.......++-|+.|+.++.
T Consensus 214 ----q~~~~l~krkTilFiDEiHRFNksQQD~fLP~V---E~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v 286 (554)
T KOG2028|consen 214 ----QNEKSLTKRKTILFIDEIHRFNKSQQDTFLPHV---ENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAV 286 (554)
T ss_pred ----HHHHhhhcceeEEEeHHhhhhhhhhhhccccee---ccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHH
Confidence 011234578999999999544 4455565543 57887776 6655432 23344456889999999999
Q ss_pred HHHHHhhcc---CCCC---C--C---hhHHHHHHHHHHHhCCCch
Q 003802 158 LQLFHLKVS---NGKQ---P--T---DYRVELSKYVVNYAGGLPL 191 (794)
Q Consensus 158 ~~lf~~~~~---~~~~---~--~---~~~~~~~~~i~~~~~g~Pl 191 (794)
..++.+... .... . . .....+.+-++..|+|-..
T Consensus 287 ~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR 331 (554)
T KOG2028|consen 287 VTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDAR 331 (554)
T ss_pred HHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHH
Confidence 999988432 1111 1 1 2344566778888888654
No 60
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.53 E-value=7.9e-08 Score=72.09 Aligned_cols=58 Identities=28% Similarity=0.421 Sum_probs=43.5
Q ss_pred CCceEEEcCCCCcccccc-cccccccCceeccCCCcCccCCCC-CCCCCCCCEEeccccc
Q 003802 400 EKLFKLNLCNSRIKYLWK-GIKPLKELKFMNLSHSCNLIRTPD-FTGVPNLERLNLEGCT 457 (794)
Q Consensus 400 ~~L~~L~L~~n~i~~l~~-~~~~l~~L~~L~L~~n~~~~~~~~-~~~l~~L~~L~l~~~~ 457 (794)
++|++|++++|.++.+|. .|.++++|++|++++|.+....+. |.++++|++|++++|.
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 367788888888888875 477788888888888777666665 7777777777777765
No 61
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.52 E-value=1.1e-06 Score=94.67 Aligned_cols=163 Identities=21% Similarity=0.291 Sum_probs=95.9
Q ss_pred hhHhHhcCCCCeEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEEechhhhcccChHHHHHHHHHHHhccccccccch
Q 003802 4 MNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDV 83 (794)
Q Consensus 4 l~~~l~~~~~~~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 83 (794)
+.+++.. ...+.+.|+|++|+||||+|+.+++.....|. .+... .... +..++++..
T Consensus 27 L~~~i~~--~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~---~l~a~-----~~~~-~~ir~ii~~------------ 83 (413)
T PRK13342 27 LRRMIEA--GRLSSMILWGPPGTGKTTLARIIAGATDAPFE---ALSAV-----TSGV-KDLREVIEE------------ 83 (413)
T ss_pred HHHHHHc--CCCceEEEECCCCCCHHHHHHHHHHHhCCCEE---EEecc-----cccH-HHHHHHHHH------------
Confidence 4555544 34567889999999999999999997654432 12110 0111 111222221
Q ss_pred hhhHHHHHH-HhcCCeEEEEEcCCCChH--HHHHHhcCCCCCCCCCEEEEE--eCChh--hh-hhcCcCcEEEcCCCChH
Q 003802 84 HKGINLIRW-RLCRKRVLVILDDVDQLE--QLQALVGNHDWFGFGSRIIIT--SRDEH--VL-KSHGVTNTYKVRGLDYV 155 (794)
Q Consensus 84 ~~~~~~l~~-~l~~~r~LlVlDd~~~~~--~~~~l~~~~~~~~~gs~IlvT--tR~~~--v~-~~~~~~~~~~l~~L~~~ 155 (794)
... ...+++.+|++|+++... ..+.+...+. .|..++|. |.+.. +. ........+++.+++++
T Consensus 84 ------~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~aL~SR~~~~~~~~ls~e 154 (413)
T PRK13342 84 ------ARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNPALLSRAQVFELKPLSEE 154 (413)
T ss_pred ------HHHhhhcCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccHHHhccceeeEeCCCCHH
Confidence 111 113578899999998653 4556655543 35555553 33321 11 11223357899999999
Q ss_pred hHHHHHHhhccCC-CCCChhHHHHHHHHHHHhCCCchHHHHHhh
Q 003802 156 EALQLFHLKVSNG-KQPTDYRVELSKYVVNYAGGLPLAIEVLGS 198 (794)
Q Consensus 156 ea~~lf~~~~~~~-~~~~~~~~~~~~~i~~~~~g~Plai~~~a~ 198 (794)
+...++.+.+... ........+..+.|++.++|.+..+..+..
T Consensus 155 ~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le 198 (413)
T PRK13342 155 DIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLE 198 (413)
T ss_pred HHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHH
Confidence 9999998865321 111123346678899999999877654433
No 62
>PRK08727 hypothetical protein; Validated
Probab=98.52 E-value=1.1e-06 Score=86.45 Aligned_cols=146 Identities=18% Similarity=0.201 Sum_probs=88.1
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhhccccceEEEEechhhhcccChHHHHHHHHHHHhccccccccchhhhHHHHHHHhc
Q 003802 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWRLC 95 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~ 95 (794)
..+.|+|+.|+|||.|++.+++...+....++|+. ... ....+.. ..+.+
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~----~~~------~~~~~~~-------------------~~~~l- 91 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLP----LQA------AAGRLRD-------------------ALEAL- 91 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEe----HHH------hhhhHHH-------------------HHHHH-
Confidence 46999999999999999999997666555667765 111 1111110 01111
Q ss_pred CCeEEEEEcCCCChH---HHH-HHhcCCCC-CCCCCEEEEEeCCh---------hhhhhcCcCcEEEcCCCChHhHHHHH
Q 003802 96 RKRVLVILDDVDQLE---QLQ-ALVGNHDW-FGFGSRIIITSRDE---------HVLKSHGVTNTYKVRGLDYVEALQLF 161 (794)
Q Consensus 96 ~~r~LlVlDd~~~~~---~~~-~l~~~~~~-~~~gs~IlvTtR~~---------~v~~~~~~~~~~~l~~L~~~ea~~lf 161 (794)
.+.-+||+||++... .|. .+...+.. ...|..||+|++.. .+...+.....++++++++++..+++
T Consensus 92 ~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL 171 (233)
T PRK08727 92 EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVL 171 (233)
T ss_pred hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHH
Confidence 233489999996432 222 22211110 12466799999852 11222333558899999999999999
Q ss_pred HhhccCCCCCChhHHHHHHHHHHHhCCCchHH
Q 003802 162 HLKVSNGKQPTDYRVELSKYVVNYAGGLPLAI 193 (794)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 193 (794)
.+++.... -...+++...|++.++|-.-.+
T Consensus 172 ~~~a~~~~--l~l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 172 RERAQRRG--LALDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHHHHHcC--CCCCHHHHHHHHHhCCCCHHHH
Confidence 98763321 2233466777888887655444
No 63
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=1.3e-09 Score=103.40 Aligned_cols=178 Identities=19% Similarity=0.193 Sum_probs=93.3
Q ss_pred CCEEecccccccc-cccccccCccccccccccccccccccccccCCCCCccEEEecCCCCCCCCC--ccccCCCCCcEEE
Q 003802 448 LERLNLEGCTRLL-EVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLP--QDLGEVECLEELD 524 (794)
Q Consensus 448 L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~--~~~~~l~~L~~L~ 524 (794)
|++|||++..+.. .+...+..|.+|+.|.+.++.+...+...+++-.+|+.|+|+.|+-..... -.+.+++.|..|+
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN 266 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN 266 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC
Confidence 5555555543322 222345667777777777777766777777777788888887776554332 2256777777777
Q ss_pred ccCccCc--ccCccccc-CCCCCEEEcCCCCCCCCccccccchhccccCCCCCCCccccCCC-CCCCCCCCEEecCCCCC
Q 003802 525 VGGTAIR--QIPPSIVQ-LVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPR-FTGLSSLQTLDLSDCNL 600 (794)
Q Consensus 525 l~~~~l~--~l~~~l~~-l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~~L~l~~n~~ 600 (794)
++.|.+. .+...+.+ -++|..|+++|+...... ..+.. ...+++|..||||+|..
T Consensus 267 lsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~---------------------sh~~tL~~rcp~l~~LDLSD~v~ 325 (419)
T KOG2120|consen 267 LSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQK---------------------SHLSTLVRRCPNLVHLDLSDSVM 325 (419)
T ss_pred chHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhh---------------------hHHHHHHHhCCceeeeccccccc
Confidence 7777654 11111111 235666666665511100 00011 22455666666666654
Q ss_pred ccCCCCccccCCCCCCeEeCCCCCCc--cCchhhhccCCCCEEecCCC
Q 003802 601 LEGAIPSDIGSLFSLEAIDLSGNNFF--SLPSSINQLLKLKILCLEKC 646 (794)
Q Consensus 601 ~~~~~~~~~~~l~~L~~L~L~~n~l~--~lp~~l~~l~~L~~L~L~~n 646 (794)
++......|..++.|++|.++.|..- ..--.+...|+|.+|++.+|
T Consensus 326 l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 326 LKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred cCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 44333334445555555555555211 10012344455555555554
No 64
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.51 E-value=3.7e-06 Score=80.06 Aligned_cols=160 Identities=20% Similarity=0.200 Sum_probs=95.7
Q ss_pred hhhhHhHhcCCCCeEEEEEEccCCCcHHHHHHHHHHHhhcc---------------------ccceEEEEechhhhcccC
Q 003802 2 EKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ---------------------FEASSFLANVREVSVTRG 60 (794)
Q Consensus 2 ~~l~~~l~~~~~~~~vi~i~G~~GvGKTtLa~~v~~~~~~~---------------------f~~~~~~~~~~~~~~~~~ 60 (794)
+.+.+.+..+ .-.+.+.++|+.|+|||++|+.+++.+-.. ++...++... .....
T Consensus 2 ~~l~~~i~~~-~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~---~~~~~ 77 (188)
T TIGR00678 2 QQLKRALEKG-RLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPE---GQSIK 77 (188)
T ss_pred hHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccc---cCcCC
Confidence 3556666654 224788999999999999999999876321 1111222100 00000
Q ss_pred hHHHHHHHHHHHhccccccccchhhhHHHHHH-HhcCCeEEEEEcCCCChH--HHHHHhcCCCCCCCCCEEEEEeCCh-h
Q 003802 61 LVPLQEQLLSEVLMERDLIIWDVHKGINLIRW-RLCRKRVLVILDDVDQLE--QLQALVGNHDWFGFGSRIIITSRDE-H 136 (794)
Q Consensus 61 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~-~l~~~r~LlVlDd~~~~~--~~~~l~~~~~~~~~gs~IlvTtR~~-~ 136 (794)
.+..+++... +.. -..+.+-++|+|+++... ..+.++..+....+.+.+|++|+.. .
T Consensus 78 -~~~i~~i~~~------------------~~~~~~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~ 138 (188)
T TIGR00678 78 -VDQVRELVEF------------------LSRTPQESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEK 138 (188)
T ss_pred -HHHHHHHHHH------------------HccCcccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHh
Confidence 1111111211 110 012566789999997653 3666666665445566677766643 3
Q ss_pred hhhh-cCcCcEEEcCCCChHhHHHHHHhhccCCCCCChhHHHHHHHHHHHhCCCchH
Q 003802 137 VLKS-HGVTNTYKVRGLDYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLA 192 (794)
Q Consensus 137 v~~~-~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 192 (794)
+... ......+++.+++.++..+++.+. + . .++.+..|++.++|.|..
T Consensus 139 l~~~i~sr~~~~~~~~~~~~~~~~~l~~~---g--i---~~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 139 LLPTIRSRCQVLPFPPLSEEALLQWLIRQ---G--I---SEEAAELLLALAGGSPGA 187 (188)
T ss_pred ChHHHHhhcEEeeCCCCCHHHHHHHHHHc---C--C---CHHHHHHHHHHcCCCccc
Confidence 2222 223458999999999999999876 1 1 236688999999998853
No 65
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.49 E-value=2.7e-06 Score=82.48 Aligned_cols=158 Identities=17% Similarity=0.177 Sum_probs=88.9
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhhcccc--ceEEEEechhhhcccChHHHHHHHHHHHhccccccccchhhhHHHHHH
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFE--ASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRW 92 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~ 92 (794)
...+.|+|+.|+|||.|.+++++.+.+..+ .++|++. .+....+...+.. .....+++
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~----------~~f~~~~~~~~~~----------~~~~~~~~ 93 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSA----------EEFIREFADALRD----------GEIEEFKD 93 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEH----------HHHHHHHHHHHHT----------TSHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecH----------HHHHHHHHHHHHc----------ccchhhhh
Confidence 445789999999999999999997765443 3556541 1222333332111 11233444
Q ss_pred HhcCCeEEEEEcCCCChH---HHHHHhc-CCC-CCCCCCEEEEEeCCh---------hhhhhcCcCcEEEcCCCChHhHH
Q 003802 93 RLCRKRVLVILDDVDQLE---QLQALVG-NHD-WFGFGSRIIITSRDE---------HVLKSHGVTNTYKVRGLDYVEAL 158 (794)
Q Consensus 93 ~l~~~r~LlVlDd~~~~~---~~~~l~~-~~~-~~~~gs~IlvTtR~~---------~v~~~~~~~~~~~l~~L~~~ea~ 158 (794)
.++ .-=+|++||++... .|..... .+. ....|.+||+|++.. .....+.....+++++.++++..
T Consensus 94 ~~~-~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~ 172 (219)
T PF00308_consen 94 RLR-SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRR 172 (219)
T ss_dssp HHC-TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHH
T ss_pred hhh-cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHH
Confidence 454 33477889996542 2222211 110 013477899999653 12233344568999999999999
Q ss_pred HHHHhhccCCCCCChhHHHHHHHHHHHhCCCchHHHH
Q 003802 159 QLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIEV 195 (794)
Q Consensus 159 ~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 195 (794)
+++.+.+.... ....++++.-|++.+.+..-.+..
T Consensus 173 ~il~~~a~~~~--~~l~~~v~~~l~~~~~~~~r~L~~ 207 (219)
T PF00308_consen 173 RILQKKAKERG--IELPEEVIEYLARRFRRDVRELEG 207 (219)
T ss_dssp HHHHHHHHHTT----S-HHHHHHHHHHTTSSHHHHHH
T ss_pred HHHHHHHHHhC--CCCcHHHHHHHHHhhcCCHHHHHH
Confidence 99998873222 123456777777777665544443
No 66
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.48 E-value=3.2e-09 Score=105.80 Aligned_cols=270 Identities=16% Similarity=0.187 Sum_probs=150.2
Q ss_pred ccccccCceeccCCCcCccCCCC---CCCCCCCCEEeccccccccccc--ccccCccccccccccccccccc--cccccC
Q 003802 419 IKPLKELKFMNLSHSCNLIRTPD---FTGVPNLERLNLEGCTRLLEVH--QSVGTLKRLILLNLKDCRNLVS--FPKNVC 491 (794)
Q Consensus 419 ~~~l~~L~~L~L~~n~~~~~~~~---~~~l~~L~~L~l~~~~~~~~~~--~~~~~l~~L~~L~l~~n~~~~~--~~~~~~ 491 (794)
...++++++|.+.+|...+...- -..+++|++|++..|...+... .....+++|++|+++.|+-+.. +..-..
T Consensus 160 ~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~r 239 (483)
T KOG4341|consen 160 ASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQR 239 (483)
T ss_pred hhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhc
Confidence 45677777777777764433221 2346778888887766544321 1234577888888888765433 122234
Q ss_pred CCCCccEEEecCCCCCCCC--CccccCCCCCcEEEccCcc-CcccC--cccccCCCCCEEEcCCCCCCCCccccccchhc
Q 003802 492 LMKSLKILCLCGCLKLEKL--PQDLGEVECLEELDVGGTA-IRQIP--PSIVQLVNLKIFSLHGCKGQPPKILSSNFFLS 566 (794)
Q Consensus 492 ~l~~L~~L~L~~~~~~~~~--~~~~~~l~~L~~L~l~~~~-l~~l~--~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 566 (794)
++..++.+.+.||.-.+.- ...-..+..+..+++.++. ++... ..-..+..|+.|..++|.....
T Consensus 240 G~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d---------- 309 (483)
T KOG4341|consen 240 GCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITD---------- 309 (483)
T ss_pred cchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCch----------
Confidence 4555666666666544311 0111233345555554442 33211 1123466777777777763211
Q ss_pred cccCCCCCCCccccCCC-CCCCCCCCEEecCCCCCccCCCCccc-cCCCCCCeEeCCCCCCc---cCchhhhccCCCCEE
Q 003802 567 LLLPNKNSDSMCLSFPR-FTGLSSLQTLDLSDCNLLEGAIPSDI-GSLFSLEAIDLSGNNFF---SLPSSINQLLKLKIL 641 (794)
Q Consensus 567 ~~~~~~~~~~~~~~~~~-~~~~~~L~~L~l~~n~~~~~~~~~~~-~~l~~L~~L~L~~n~l~---~lp~~l~~l~~L~~L 641 (794)
..+.. -.++.+|+.|.++.|..+++.-...+ .+++.|+.+++..|... .+...-.+++.|++|
T Consensus 310 ------------~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~l 377 (483)
T KOG4341|consen 310 ------------EVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVL 377 (483)
T ss_pred ------------HHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccC
Confidence 11111 23567888888888875554433333 35778888888888543 233333567888888
Q ss_pred ecCCCcCCCCCC--------CCCccccccccccccccccccccccccCCCCceEEEeCCCCchhhhhhhhhH-HHHHHHH
Q 003802 642 CLEKCRNLKSLP--------ELPPEIVFVGAEDCTSLETISAFAKLSRSPNIALNFLNCFKLVEDQVSKDNL-AVTLMKQ 712 (794)
Q Consensus 642 ~L~~n~~~~~~~--------~~~~~L~~L~l~~~~~L~~l~~~~n~~~~~~~~~~~~~~~~L~~L~l~~N~l-~~~~~~~ 712 (794)
.|++|...++.. .....++.+.+++||.++.-.+. .+..|++|+.+++-..+- +......
T Consensus 378 slshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le-----------~l~~c~~Leri~l~~~q~vtk~~i~~ 446 (483)
T KOG4341|consen 378 SLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLE-----------HLSICRNLERIELIDCQDVTKEAISR 446 (483)
T ss_pred ChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHH-----------HHhhCcccceeeeechhhhhhhhhHH
Confidence 888888766541 11245666666666665554333 345677888777765543 2233344
Q ss_pred HHhhhcccc
Q 003802 713 WLLSYHSLV 721 (794)
Q Consensus 713 ~~~~~~~l~ 721 (794)
+...+++..
T Consensus 447 ~~~~lp~i~ 455 (483)
T KOG4341|consen 447 FATHLPNIK 455 (483)
T ss_pred HHhhCccce
Confidence 444444433
No 67
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.48 E-value=1.8e-06 Score=80.81 Aligned_cols=154 Identities=16% Similarity=0.185 Sum_probs=83.2
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEEechhhhcccChHHHHHHHHHHHhccccccccchhhhHHHHHH
Q 003802 13 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRW 92 (794)
Q Consensus 13 ~~~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~ 92 (794)
+...-+.+||++|+||||||.-+++.....|. +.+. .... ...++ ..++.
T Consensus 48 ~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~---~~sg-~~i~---k~~dl-~~il~---------------------- 97 (233)
T PF05496_consen 48 EALDHMLFYGPPGLGKTTLARIIANELGVNFK---ITSG-PAIE---KAGDL-AAILT---------------------- 97 (233)
T ss_dssp S---EEEEESSTTSSHHHHHHHHHHHCT--EE---EEEC-CC-----SCHHH-HHHHH----------------------
T ss_pred CCcceEEEECCCccchhHHHHHHHhccCCCeE---eccc-hhhh---hHHHH-HHHHH----------------------
Confidence 45678889999999999999999998776653 2221 0011 11111 11111
Q ss_pred HhcCCeEEEEEcCCCChHH--HHHHhcCCCC--------CCC-----------CCEEEEEeCChhhhhhcCcCc--EEEc
Q 003802 93 RLCRKRVLVILDDVDQLEQ--LQALVGNHDW--------FGF-----------GSRIIITSRDEHVLKSHGVTN--TYKV 149 (794)
Q Consensus 93 ~l~~~r~LlVlDd~~~~~~--~~~l~~~~~~--------~~~-----------gs~IlvTtR~~~v~~~~~~~~--~~~l 149 (794)
.+ +++-+|++|++..... -+.+.+...+ .++ -+-|=-|||...+...+.... ..++
T Consensus 98 ~l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~g~ls~pLrdRFgi~~~l 176 (233)
T PF05496_consen 98 NL-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRAGLLSSPLRDRFGIVLRL 176 (233)
T ss_dssp T---TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSGCCTSHCCCTTSSEEEE-
T ss_pred hc-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeeccccccchhHHhhcceecch
Confidence 12 3455788899976542 3333332211 111 223446888765544444333 4589
Q ss_pred CCCChHhHHHHHHhhccCCCCCChhHHHHHHHHHHHhCCCchHHHHHhhh
Q 003802 150 RGLDYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIEVLGSF 199 (794)
Q Consensus 150 ~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~a~~ 199 (794)
+..+.+|-.++..+.+.. -.-+..++.+.+|++++.|-|.-+.-+-+.
T Consensus 177 ~~Y~~~el~~Iv~r~a~~--l~i~i~~~~~~~Ia~rsrGtPRiAnrll~r 224 (233)
T PF05496_consen 177 EFYSEEELAKIVKRSARI--LNIEIDEDAAEEIARRSRGTPRIANRLLRR 224 (233)
T ss_dssp ---THHHHHHHHHHCCHC--TT-EE-HHHHHHHHHCTTTSHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHH--hCCCcCHHHHHHHHHhcCCChHHHHHHHHH
Confidence 999999999999987622 223445678999999999999766544433
No 68
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.46 E-value=7.1e-06 Score=90.46 Aligned_cols=98 Identities=9% Similarity=0.152 Sum_probs=65.9
Q ss_pred CCeEEEEEcCCCChHH--HHHHhcCCCCCCCCCEEEEEeCCh-hhhhh-cCcCcEEEcCCCChHhHHHHHHhhccCCCCC
Q 003802 96 RKRVLVILDDVDQLEQ--LQALVGNHDWFGFGSRIIITSRDE-HVLKS-HGVTNTYKVRGLDYVEALQLFHLKVSNGKQP 171 (794)
Q Consensus 96 ~~r~LlVlDd~~~~~~--~~~l~~~~~~~~~gs~IlvTtR~~-~v~~~-~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~ 171 (794)
++.-++|||+++.... ++.++..+.....+.++|+||++. .+... .+....+++..++.++..+.+.+.+..+.
T Consensus 118 gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~Eg-- 195 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEER-- 195 (830)
T ss_pred CCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcC--
Confidence 4556889999987754 777766554444577777777764 33222 23345899999999999999988763322
Q ss_pred ChhHHHHHHHHHHHhCCCch-HHHH
Q 003802 172 TDYRVELSKYVVNYAGGLPL-AIEV 195 (794)
Q Consensus 172 ~~~~~~~~~~i~~~~~g~Pl-ai~~ 195 (794)
.....+..+.|++.++|... ++.+
T Consensus 196 I~id~eAL~lIA~~A~GsmRdALsL 220 (830)
T PRK07003 196 IAFEPQALRLLARAAQGSMRDALSL 220 (830)
T ss_pred CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 22344677889999988664 4443
No 69
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.46 E-value=6.9e-06 Score=86.64 Aligned_cols=98 Identities=14% Similarity=0.132 Sum_probs=64.9
Q ss_pred CCeEEEEEcCCCChH--HHHHHhcCCCCCCCCCEEEEEeCC-hhhhhh-cCcCcEEEcCCCChHhHHHHHHhhccCCCCC
Q 003802 96 RKRVLVILDDVDQLE--QLQALVGNHDWFGFGSRIIITSRD-EHVLKS-HGVTNTYKVRGLDYVEALQLFHLKVSNGKQP 171 (794)
Q Consensus 96 ~~r~LlVlDd~~~~~--~~~~l~~~~~~~~~gs~IlvTtR~-~~v~~~-~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~ 171 (794)
+++-++|+|+++... .++.++..+.......++|++|.+ ..+... .+....+++.+++.++..+++...+....
T Consensus 118 ~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g-- 195 (363)
T PRK14961 118 SRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKES-- 195 (363)
T ss_pred CCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcC--
Confidence 456699999998775 366676665544556666666654 333322 22345889999999999999888663222
Q ss_pred ChhHHHHHHHHHHHhCCCchHHHH
Q 003802 172 TDYRVELSKYVVNYAGGLPLAIEV 195 (794)
Q Consensus 172 ~~~~~~~~~~i~~~~~g~Plai~~ 195 (794)
....++.++.|++.++|.|..+..
T Consensus 196 ~~i~~~al~~ia~~s~G~~R~al~ 219 (363)
T PRK14961 196 IDTDEYALKLIAYHAHGSMRDALN 219 (363)
T ss_pred CCCCHHHHHHHHHHcCCCHHHHHH
Confidence 122345678899999998865443
No 70
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.43 E-value=3.9e-06 Score=82.63 Aligned_cols=150 Identities=14% Similarity=0.204 Sum_probs=89.2
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEEechhhhcccChHHHHHHHHHHHhccccccccchhhhHHHHHHHh
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWRL 94 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l 94 (794)
.+.+.|+|+.|+|||+|++.+++.....-..+.|+. +..... ... + +.+.+
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~----~~~~~~---~~~------------------~----~~~~~ 95 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVP----LDKRAW---FVP------------------E----VLEGM 95 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE----HHHHhh---hhH------------------H----HHHHh
Confidence 457899999999999999999997655444456665 211000 000 0 11111
Q ss_pred cCCeEEEEEcCCCCh---HHHHHHh-cCCCC-CCCC-CEEEEEeCCh---------hhhhhcCcCcEEEcCCCChHhHHH
Q 003802 95 CRKRVLVILDDVDQL---EQLQALV-GNHDW-FGFG-SRIIITSRDE---------HVLKSHGVTNTYKVRGLDYVEALQ 159 (794)
Q Consensus 95 ~~~r~LlVlDd~~~~---~~~~~l~-~~~~~-~~~g-s~IlvTtR~~---------~v~~~~~~~~~~~l~~L~~~ea~~ 159 (794)
.. --+||+||++.. ..|+... ..+.. ...| .++|+||+.. .....+.....++++++++++-.+
T Consensus 96 ~~-~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~ 174 (235)
T PRK08084 96 EQ-LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQ 174 (235)
T ss_pred hh-CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHH
Confidence 11 237899999654 2333222 11110 0123 4789998854 223334455689999999999999
Q ss_pred HHHhhccCCCCCChhHHHHHHHHHHHhCCCchHHHHH
Q 003802 160 LFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIEVL 196 (794)
Q Consensus 160 lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 196 (794)
++.+++.... -...+++..-|++++.|..-++..+
T Consensus 175 ~l~~~a~~~~--~~l~~~v~~~L~~~~~~d~r~l~~~ 209 (235)
T PRK08084 175 ALQLRARLRG--FELPEDVGRFLLKRLDREMRTLFMT 209 (235)
T ss_pred HHHHHHHHcC--CCCCHHHHHHHHHhhcCCHHHHHHH
Confidence 9987663221 2234567788888887766555433
No 71
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.42 E-value=2.5e-07 Score=69.37 Aligned_cols=57 Identities=23% Similarity=0.178 Sum_probs=22.0
Q ss_pred CCEEecccccccccccccccCccccccccccccccccccccccCCCCCccEEEecCC
Q 003802 448 LERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGC 504 (794)
Q Consensus 448 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~~ 504 (794)
|++|++++|.+....+..|.++++|++|++++|.+....|..+.++++|++|++++|
T Consensus 3 L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 3 LESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp ESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred CcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 344444443333222233344444444444443333333333344444444444443
No 72
>PRK09087 hypothetical protein; Validated
Probab=98.41 E-value=2.2e-06 Score=83.46 Aligned_cols=139 Identities=15% Similarity=0.156 Sum_probs=87.1
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEEechhhhcccChHHHHHHHHHHHhccccccccchhhhHHHHHHHh
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWRL 94 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l 94 (794)
.+.+.|+|+.|+|||+|++.++...+ ..|++. . ....++... +
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~-----~~~i~~----~------~~~~~~~~~----------------------~ 86 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSD-----ALLIHP----N------EIGSDAANA----------------------A 86 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcC-----CEEecH----H------HcchHHHHh----------------------h
Confidence 45789999999999999998887542 235541 0 111111111 0
Q ss_pred cCCeEEEEEcCCCCh----HHHHHHhcCCCCCCCCCEEEEEeCCh---------hhhhhcCcCcEEEcCCCChHhHHHHH
Q 003802 95 CRKRVLVILDDVDQL----EQLQALVGNHDWFGFGSRIIITSRDE---------HVLKSHGVTNTYKVRGLDYVEALQLF 161 (794)
Q Consensus 95 ~~~r~LlVlDd~~~~----~~~~~l~~~~~~~~~gs~IlvTtR~~---------~v~~~~~~~~~~~l~~L~~~ea~~lf 161 (794)
.+ -+|++||++.. +.+-.+..... ..|..||+|++.. .....+.....++++++++++-.+++
T Consensus 87 ~~--~~l~iDDi~~~~~~~~~lf~l~n~~~--~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL 162 (226)
T PRK09087 87 AE--GPVLIEDIDAGGFDETGLFHLINSVR--QAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVI 162 (226)
T ss_pred hc--CeEEEECCCCCCCCHHHHHHHHHHHH--hCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHH
Confidence 01 27888999543 22222222211 3477899988742 23334455678999999999999999
Q ss_pred HhhccCCCCCChhHHHHHHHHHHHhCCCchHHHHH
Q 003802 162 HLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIEVL 196 (794)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 196 (794)
++.+... .....+++..-|++++.|..-++..+
T Consensus 163 ~~~~~~~--~~~l~~ev~~~La~~~~r~~~~l~~~ 195 (226)
T PRK09087 163 FKLFADR--QLYVDPHVVYYLVSRMERSLFAAQTI 195 (226)
T ss_pred HHHHHHc--CCCCCHHHHHHHHHHhhhhHHHHHHH
Confidence 9887332 12234577888888888877666543
No 73
>PRK05642 DNA replication initiation factor; Validated
Probab=98.41 E-value=2.8e-06 Score=83.49 Aligned_cols=149 Identities=19% Similarity=0.259 Sum_probs=88.6
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhhccccceEEEEechhhhcccChHHHHHHHHHHHhccccccccchhhhHHHHHHHhc
Q 003802 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWRLC 95 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~ 95 (794)
..+.|+|+.|+|||.|++.+++.+.+.-..++|++.. ++ ... ...+.+.++
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~-------~~-------~~~---------------~~~~~~~~~ 96 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLA-------EL-------LDR---------------GPELLDNLE 96 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHH-------HH-------Hhh---------------hHHHHHhhh
Confidence 6788999999999999999998765544556777621 11 100 011222222
Q ss_pred CCeEEEEEcCCCCh---HHHHH-HhcCCC-CCCCCCEEEEEeCChhh---------hhhcCcCcEEEcCCCChHhHHHHH
Q 003802 96 RKRVLVILDDVDQL---EQLQA-LVGNHD-WFGFGSRIIITSRDEHV---------LKSHGVTNTYKVRGLDYVEALQLF 161 (794)
Q Consensus 96 ~~r~LlVlDd~~~~---~~~~~-l~~~~~-~~~~gs~IlvTtR~~~v---------~~~~~~~~~~~l~~L~~~ea~~lf 161 (794)
+-. +||+||+... ..|+. +...+. ....|..||+|++...- ...+.....++++++++++-.+++
T Consensus 97 ~~d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il 175 (234)
T PRK05642 97 QYE-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRAL 175 (234)
T ss_pred hCC-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHH
Confidence 222 6789999633 23332 222221 01346788998875321 112233457899999999999999
Q ss_pred HhhccCCCCCChhHHHHHHHHHHHhCCCchHHHHH
Q 003802 162 HLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIEVL 196 (794)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 196 (794)
++++.... -...+++..-|++++.|....+..+
T Consensus 176 ~~ka~~~~--~~l~~ev~~~L~~~~~~d~r~l~~~ 208 (234)
T PRK05642 176 QLRASRRG--LHLTDEVGHFILTRGTRSMSALFDL 208 (234)
T ss_pred HHHHHHcC--CCCCHHHHHHHHHhcCCCHHHHHHH
Confidence 86653221 1223467777888887766555443
No 74
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.39 E-value=1.6e-05 Score=89.55 Aligned_cols=100 Identities=12% Similarity=0.130 Sum_probs=66.9
Q ss_pred cCCeEEEEEcCCCCh--HHHHHHhcCCCCCCCCCEEEEEeCC-hhhhhh-cCcCcEEEcCCCChHhHHHHHHhhccCCCC
Q 003802 95 CRKRVLVILDDVDQL--EQLQALVGNHDWFGFGSRIIITSRD-EHVLKS-HGVTNTYKVRGLDYVEALQLFHLKVSNGKQ 170 (794)
Q Consensus 95 ~~~r~LlVlDd~~~~--~~~~~l~~~~~~~~~gs~IlvTtR~-~~v~~~-~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~ 170 (794)
.+++-++|||+++.. ...+.++..+.......++|++|.. ..+... ......+++.+++.++...++.+.+....
T Consensus 117 ~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~Eg- 195 (944)
T PRK14949 117 RGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQ- 195 (944)
T ss_pred cCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcC-
Confidence 367789999999776 3466766655433455666655544 444322 23345899999999999999988763321
Q ss_pred CChhHHHHHHHHHHHhCCCchHHHHH
Q 003802 171 PTDYRVELSKYVVNYAGGLPLAIEVL 196 (794)
Q Consensus 171 ~~~~~~~~~~~i~~~~~g~Plai~~~ 196 (794)
.....+.++.|++.++|.|..+..+
T Consensus 196 -I~~edeAL~lIA~~S~Gd~R~ALnL 220 (944)
T PRK14949 196 -LPFEAEALTLLAKAANGSMRDALSL 220 (944)
T ss_pred -CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 2233467788999999988655544
No 75
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.38 E-value=9.3e-06 Score=90.04 Aligned_cols=159 Identities=14% Similarity=0.164 Sum_probs=87.1
Q ss_pred hhhhHhHhc---CCCCeEEEEEEccCCCcHHHHHHHHHHHhhcc-----cc--ceEEEEechhhhcccChHHHHHHHHHH
Q 003802 2 EKMNGYLEA---GLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ-----FE--ASSFLANVREVSVTRGLVPLQEQLLSE 71 (794)
Q Consensus 2 ~~l~~~l~~---~~~~~~vi~i~G~~GvGKTtLa~~v~~~~~~~-----f~--~~~~~~~~~~~~~~~~~~~~~~~i~~~ 71 (794)
++|...|.. +.....++.|+|++|.|||++|+.|.+++.+. .+ .+++|. +........+...+..+
T Consensus 765 eeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYIN----Cm~Lstp~sIYqvI~qq 840 (1164)
T PTZ00112 765 KEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEIN----GMNVVHPNAAYQVLYKQ 840 (1164)
T ss_pred HHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEe----CCccCCHHHHHHHHHHH
Confidence 345555543 23334678899999999999999998865322 22 235555 22233445566666666
Q ss_pred HhccccccccchhhhHHHHHHHhc---CCeEEEEEcCCCChH--H---HHHHhcCCCCCCCCCEEEE--EeCChh----h
Q 003802 72 VLMERDLIIWDVHKGINLIRWRLC---RKRVLVILDDVDQLE--Q---LQALVGNHDWFGFGSRIII--TSRDEH----V 137 (794)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~l~~~l~---~~r~LlVlDd~~~~~--~---~~~l~~~~~~~~~gs~Ilv--TtR~~~----v 137 (794)
+............+....+.+.+. ....+||||+++... . +-.+..... ..+++|+| ++.... +
T Consensus 841 L~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~--~s~SKLiLIGISNdlDLperL 918 (1164)
T PTZ00112 841 LFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPT--KINSKLVLIAISNTMDLPERL 918 (1164)
T ss_pred HcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhh--ccCCeEEEEEecCchhcchhh
Confidence 543332222223334444444442 234689999997553 1 222222111 23455443 333211 1
Q ss_pred hhhcC---cCcEEEcCCCChHhHHHHHHhhcc
Q 003802 138 LKSHG---VTNTYKVRGLDYVEALQLFHLKVS 166 (794)
Q Consensus 138 ~~~~~---~~~~~~l~~L~~~ea~~lf~~~~~ 166 (794)
...+. ....+...+++.++..+++..++.
T Consensus 919 dPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe 950 (1164)
T PTZ00112 919 IPRCRSRLAFGRLVFSPYKGDEIEKIIKERLE 950 (1164)
T ss_pred hhhhhhccccccccCCCCCHHHHHHHHHHHHH
Confidence 11111 122466799999999999999884
No 76
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.38 E-value=4.1e-06 Score=88.46 Aligned_cols=186 Identities=16% Similarity=0.152 Sum_probs=93.2
Q ss_pred hhhHhHhcCCCCeEEEEEEccCCCcHHHHHHHHHHHhhcc-cc-ceEEEEechhhhcccChHHHHH--HHHHHHhccccc
Q 003802 3 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ-FE-ASSFLANVREVSVTRGLVPLQE--QLLSEVLMERDL 78 (794)
Q Consensus 3 ~l~~~l~~~~~~~~vi~i~G~~GvGKTtLa~~v~~~~~~~-f~-~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~ 78 (794)
++.+++.. +..+.+.++|+.|+|||++|+.+++.+... +. ..++++......... ..+.. ......... ..
T Consensus 26 ~L~~~~~~--~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~ 100 (337)
T PRK12402 26 RLSRAVDS--PNLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFDQGK--KYLVEDPRFAHFLGTD-KR 100 (337)
T ss_pred HHHHHHhC--CCCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhhcch--hhhhcCcchhhhhhhh-hh
Confidence 34444433 334568899999999999999999866433 22 233443211000000 00000 000000000 00
Q ss_pred cccchhhhHHHH-HHH---h--cCCeEEEEEcCCCChHH--HHHHhcCCCCCCCCCEEEEEeCCh-hhhhhc-CcCcEEE
Q 003802 79 IIWDVHKGINLI-RWR---L--CRKRVLVILDDVDQLEQ--LQALVGNHDWFGFGSRIIITSRDE-HVLKSH-GVTNTYK 148 (794)
Q Consensus 79 ~~~~~~~~~~~l-~~~---l--~~~r~LlVlDd~~~~~~--~~~l~~~~~~~~~gs~IlvTtR~~-~v~~~~-~~~~~~~ 148 (794)
......+..+.+ +.. . .+.+-++|+||++.... ...+...+......+++|+|+... .+...+ .....++
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~~~~L~sr~~~v~ 180 (337)
T PRK12402 101 IRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLIPPIRSRCLPLF 180 (337)
T ss_pred hccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhCchhhcCCceEEE
Confidence 000000111111 111 1 13445899999976532 333333322223456777776543 222222 2334788
Q ss_pred cCCCChHhHHHHHHhhccCCCCCChhHHHHHHHHHHHhCCCchHHHH
Q 003802 149 VRGLDYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIEV 195 (794)
Q Consensus 149 l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 195 (794)
+.+++.++...++.+.+..... ....+..+.+++.++|.+-.+..
T Consensus 181 ~~~~~~~~~~~~l~~~~~~~~~--~~~~~al~~l~~~~~gdlr~l~~ 225 (337)
T PRK12402 181 FRAPTDDELVDVLESIAEAEGV--DYDDDGLELIAYYAGGDLRKAIL 225 (337)
T ss_pred ecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHH
Confidence 8999999999999887632221 13346788899999887655543
No 77
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.37 E-value=2.1e-05 Score=85.88 Aligned_cols=98 Identities=11% Similarity=0.065 Sum_probs=65.4
Q ss_pred CCeEEEEEcCCCChH--HHHHHhcCCCCCCCCCEEEEEeCCh-hhh-hhcCcCcEEEcCCCChHhHHHHHHhhccCCCCC
Q 003802 96 RKRVLVILDDVDQLE--QLQALVGNHDWFGFGSRIIITSRDE-HVL-KSHGVTNTYKVRGLDYVEALQLFHLKVSNGKQP 171 (794)
Q Consensus 96 ~~r~LlVlDd~~~~~--~~~~l~~~~~~~~~gs~IlvTtR~~-~v~-~~~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~ 171 (794)
+++-++|+|+++... ..+.++..+.....+.++|++|.+. .+. ...+....+++.+++.++..+.+.+.+....
T Consensus 117 gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEg-- 194 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQ-- 194 (702)
T ss_pred CCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcC--
Confidence 566789999998764 4666666554444566777776653 222 2223445899999999999999988763322
Q ss_pred ChhHHHHHHHHHHHhCCCchHHHH
Q 003802 172 TDYRVELSKYVVNYAGGLPLAIEV 195 (794)
Q Consensus 172 ~~~~~~~~~~i~~~~~g~Plai~~ 195 (794)
.....+....|++.++|.+..+..
T Consensus 195 I~id~eAL~~IA~~S~GdLRdALn 218 (702)
T PRK14960 195 IAADQDAIWQIAESAQGSLRDALS 218 (702)
T ss_pred CCCCHHHHHHHHHHcCCCHHHHHH
Confidence 223346678899999998755443
No 78
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.35 E-value=5.9e-06 Score=85.60 Aligned_cols=164 Identities=18% Similarity=0.210 Sum_probs=97.5
Q ss_pred hhHhHhcCCCCeEEEEEEccCCCcHHHHHHHHHHHhh------ccccceEEEEechhhhcccChHHHHHHHHHHHhcccc
Q 003802 4 MNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLK------DQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERD 77 (794)
Q Consensus 4 l~~~l~~~~~~~~vi~i~G~~GvGKTtLa~~v~~~~~------~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 77 (794)
+.+.+..+ .-.+.+.++|+.|+|||++|+.+++.+. .+.|...|... . .....+.+ .+++...+..
T Consensus 16 l~~~~~~~-~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~-~--~~~i~v~~-ir~~~~~~~~--- 87 (313)
T PRK05564 16 IKNSIIKN-RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPI-N--KKSIGVDD-IRNIIEEVNK--- 87 (313)
T ss_pred HHHHHHcC-CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccc-c--CCCCCHHH-HHHHHHHHhc---
Confidence 44444432 2357888999999999999999998652 23333333220 0 01111111 2222221100
Q ss_pred ccccchhhhHHHHHHHhcCCeEEEEEcCCCCh--HHHHHHhcCCCCCCCCCEEEEEeCChhh-hh-hcCcCcEEEcCCCC
Q 003802 78 LIIWDVHKGINLIRWRLCRKRVLVILDDVDQL--EQLQALVGNHDWFGFGSRIIITSRDEHV-LK-SHGVTNTYKVRGLD 153 (794)
Q Consensus 78 ~~~~~~~~~~~~l~~~l~~~r~LlVlDd~~~~--~~~~~l~~~~~~~~~gs~IlvTtR~~~v-~~-~~~~~~~~~l~~L~ 153 (794)
.-..+++-++|+|+++.. ..++.++..+....+++.+|++|.+... .. ..+....+++.+++
T Consensus 88 --------------~p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~~~~~~~~ 153 (313)
T PRK05564 88 --------------KPYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQIYKLNRLS 153 (313)
T ss_pred --------------CcccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhceeeeCCCcC
Confidence 011245566777776544 5588888888766778888888865432 11 12334588999999
Q ss_pred hHhHHHHHHhhccCCCCCChhHHHHHHHHHHHhCCCchHHHH
Q 003802 154 YVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIEV 195 (794)
Q Consensus 154 ~~ea~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 195 (794)
+++...++.+... . ...+.++.++..++|.|.-+..
T Consensus 154 ~~~~~~~l~~~~~---~---~~~~~~~~l~~~~~g~~~~a~~ 189 (313)
T PRK05564 154 KEEIEKFISYKYN---D---IKEEEKKSAIAFSDGIPGKVEK 189 (313)
T ss_pred HHHHHHHHHHHhc---C---CCHHHHHHHHHHcCCCHHHHHH
Confidence 9999988876541 1 1124467788999998865543
No 79
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.35 E-value=1.1e-05 Score=87.78 Aligned_cols=183 Identities=16% Similarity=0.097 Sum_probs=95.8
Q ss_pred hhHhHhcCCCCeEEEEEEccCCCcHHHHHHHHHHHhh--ccccceEEEEechhhhcccChHHHHHHHHHHHhcccccccc
Q 003802 4 MNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLK--DQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIW 81 (794)
Q Consensus 4 l~~~l~~~~~~~~vi~i~G~~GvGKTtLa~~v~~~~~--~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 81 (794)
|..++..+ .-.+.+.++|+.|+||||+|+.+++.+. +.+....|.+. ....+......-+..+.........
T Consensus 26 L~~~i~~~-~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~-----sc~~i~~~~h~dv~el~~~~~~~vd 99 (504)
T PRK14963 26 LLAALRQG-RLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECE-----SCLAVRRGAHPDVLEIDAASNNSVE 99 (504)
T ss_pred HHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcCh-----hhHHHhcCCCCceEEecccccCCHH
Confidence 33444443 2346779999999999999999998653 22221112110 0000000000000000000000001
Q ss_pred chhhhHHHHHH-HhcCCeEEEEEcCCCChH--HHHHHhcCCCCCCCCCEEEEEeC-Chhhhhhc-CcCcEEEcCCCChHh
Q 003802 82 DVHKGINLIRW-RLCRKRVLVILDDVDQLE--QLQALVGNHDWFGFGSRIIITSR-DEHVLKSH-GVTNTYKVRGLDYVE 156 (794)
Q Consensus 82 ~~~~~~~~l~~-~l~~~r~LlVlDd~~~~~--~~~~l~~~~~~~~~gs~IlvTtR-~~~v~~~~-~~~~~~~l~~L~~~e 156 (794)
+..+....+.. -..+++-++|+|+++... .++.++..+......+.+|++|. ...+.... .....+++.+++.++
T Consensus 100 ~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SRc~~~~f~~ls~~e 179 (504)
T PRK14963 100 DVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSRTQHFRFRRLTEEE 179 (504)
T ss_pred HHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcceEEEEecCCCHHH
Confidence 11111111111 112466789999997663 46777666554344555555554 34433322 334589999999999
Q ss_pred HHHHHHhhccCCCCCChhHHHHHHHHHHHhCCCchHHH
Q 003802 157 ALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIE 194 (794)
Q Consensus 157 a~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~ 194 (794)
..+++.+.+..... ...++....|++.++|.+.-+.
T Consensus 180 l~~~L~~i~~~egi--~i~~~Al~~ia~~s~GdlR~al 215 (504)
T PRK14963 180 IAGKLRRLLEAEGR--EAEPEALQLVARLADGAMRDAE 215 (504)
T ss_pred HHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHH
Confidence 99999887632221 1234667889999999886553
No 80
>PLN03025 replication factor C subunit; Provisional
Probab=98.32 E-value=5.3e-06 Score=86.14 Aligned_cols=169 Identities=18% Similarity=0.175 Sum_probs=91.9
Q ss_pred hhHhHhcCCCCeEEEEEEccCCCcHHHHHHHHHHHhh-ccccceEEEEechhhhcccChHHHHHHHHHHHhccccccccc
Q 003802 4 MNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLK-DQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWD 82 (794)
Q Consensus 4 l~~~l~~~~~~~~vi~i~G~~GvGKTtLa~~v~~~~~-~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 82 (794)
+.+++.. ++.+.+.++|++|+||||+|+.+++... ..|... ++.. ..+.... .+..++.++........
T Consensus 25 L~~~~~~--~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~-~~el--n~sd~~~-~~~vr~~i~~~~~~~~~---- 94 (319)
T PLN03025 25 LQVIARD--GNMPNLILSGPPGTGKTTSILALAHELLGPNYKEA-VLEL--NASDDRG-IDVVRNKIKMFAQKKVT---- 94 (319)
T ss_pred HHHHHhc--CCCceEEEECCCCCCHHHHHHHHHHHHhcccCccc-eeee--ccccccc-HHHHHHHHHHHHhcccc----
Confidence 4444443 3345577999999999999999999753 333321 1110 0111111 11222222221110000
Q ss_pred hhhhHHHHHHHhcCCeEEEEEcCCCChHH--HHHHhcCCCCCCCCCEEEEEeCCh-hhhhhc-CcCcEEEcCCCChHhHH
Q 003802 83 VHKGINLIRWRLCRKRVLVILDDVDQLEQ--LQALVGNHDWFGFGSRIIITSRDE-HVLKSH-GVTNTYKVRGLDYVEAL 158 (794)
Q Consensus 83 ~~~~~~~l~~~l~~~r~LlVlDd~~~~~~--~~~l~~~~~~~~~gs~IlvTtR~~-~v~~~~-~~~~~~~l~~L~~~ea~ 158 (794)
.-.++.-++|+|+++.... ...+..........+++++++... .+.... .....+++.++++++..
T Consensus 95 ----------~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~f~~l~~~~l~ 164 (319)
T PLN03025 95 ----------LPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEIL 164 (319)
T ss_pred ----------CCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcccCCCCCHHHHH
Confidence 0024567899999977642 344433333224456777766442 222211 22347899999999999
Q ss_pred HHHHhhccCCCCCChhHHHHHHHHHHHhCCCchHHH
Q 003802 159 QLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIE 194 (794)
Q Consensus 159 ~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~ 194 (794)
..+.+.+....- ....+....|++.++|-...+.
T Consensus 165 ~~L~~i~~~egi--~i~~~~l~~i~~~~~gDlR~al 198 (319)
T PLN03025 165 GRLMKVVEAEKV--PYVPEGLEAIIFTADGDMRQAL 198 (319)
T ss_pred HHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHH
Confidence 998887633221 1224567889999988764443
No 81
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.29 E-value=1.1e-05 Score=87.73 Aligned_cols=100 Identities=10% Similarity=0.094 Sum_probs=65.8
Q ss_pred cCCeEEEEEcCCCChH--HHHHHhcCCCCCCCCCEEEE-EeCChhhhhh-cCcCcEEEcCCCChHhHHHHHHhhccCCCC
Q 003802 95 CRKRVLVILDDVDQLE--QLQALVGNHDWFGFGSRIII-TSRDEHVLKS-HGVTNTYKVRGLDYVEALQLFHLKVSNGKQ 170 (794)
Q Consensus 95 ~~~r~LlVlDd~~~~~--~~~~l~~~~~~~~~gs~Ilv-TtR~~~v~~~-~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~ 170 (794)
.++.-++|||+++... .++.++..+.....++++|+ ||....+... .+....+++..++.++..+.+.+.+..+.
T Consensus 122 ~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Eg- 200 (700)
T PRK12323 122 AGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEG- 200 (700)
T ss_pred cCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcC-
Confidence 3566799999998774 47777776654445666554 5544444322 22345789999999999999887763222
Q ss_pred CChhHHHHHHHHHHHhCCCchHHHHH
Q 003802 171 PTDYRVELSKYVVNYAGGLPLAIEVL 196 (794)
Q Consensus 171 ~~~~~~~~~~~i~~~~~g~Plai~~~ 196 (794)
.....+..+.|++.++|.|.....+
T Consensus 201 -i~~d~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 201 -IAHEVNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred -CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 1222355688999999998655433
No 82
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.29 E-value=7.5e-06 Score=86.77 Aligned_cols=182 Identities=15% Similarity=0.134 Sum_probs=97.6
Q ss_pred hhHhHhcCCCCeEEEEEEccCCCcHHHHHHHHHHHhhcccc-ceEEEEechhhhcccChHHHHHHHHHHHhc---ccccc
Q 003802 4 MNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFE-ASSFLANVREVSVTRGLVPLQEQLLSEVLM---ERDLI 79 (794)
Q Consensus 4 l~~~l~~~~~~~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~~~ 79 (794)
|..++..+. -.+.+.++|+.|+||||+|+.+++.+..... .... +........+.......+.. .....
T Consensus 30 L~~~i~~~r-i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~p------Cg~C~sC~~i~~g~~~dviEIdaas~~g 102 (484)
T PRK14956 30 LQNALKSGK-IGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEP------CNECTSCLEITKGISSDVLEIDAASNRG 102 (484)
T ss_pred HHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccc------cCCCcHHHHHHccCCccceeechhhccc
Confidence 444444432 2356889999999999999999996532211 1000 00011111111111000000 00000
Q ss_pred ccchhhhHHHHHH-HhcCCeEEEEEcCCCChH--HHHHHhcCCCCCCCCCEEE-EEeCChhhhhh-cCcCcEEEcCCCCh
Q 003802 80 IWDVHKGINLIRW-RLCRKRVLVILDDVDQLE--QLQALVGNHDWFGFGSRII-ITSRDEHVLKS-HGVTNTYKVRGLDY 154 (794)
Q Consensus 80 ~~~~~~~~~~l~~-~l~~~r~LlVlDd~~~~~--~~~~l~~~~~~~~~gs~Il-vTtR~~~v~~~-~~~~~~~~l~~L~~ 154 (794)
..+..+..+.+.. -..++.-++|+|+++... .+++++..+........+| .||....+... ......+.+.+++.
T Consensus 103 Vd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~SRCq~~~f~~ls~ 182 (484)
T PRK14956 103 IENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILSRCQDFIFKKVPL 182 (484)
T ss_pred HHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHHhhhheeeecCCCH
Confidence 1111111112211 123566799999997664 4777776664333445544 45544444332 23345799999999
Q ss_pred HhHHHHHHhhccCCCCCChhHHHHHHHHHHHhCCCchHHH
Q 003802 155 VEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIE 194 (794)
Q Consensus 155 ~ea~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~ 194 (794)
++..+++.+.+.... .....+....|++.++|.+.-+.
T Consensus 183 ~~i~~~L~~i~~~Eg--i~~e~eAL~~Ia~~S~Gd~RdAL 220 (484)
T PRK14956 183 SVLQDYSEKLCKIEN--VQYDQEGLFWIAKKGDGSVRDML 220 (484)
T ss_pred HHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCChHHHHH
Confidence 999999988763222 22334677889999999885543
No 83
>PRK04195 replication factor C large subunit; Provisional
Probab=98.28 E-value=1.9e-05 Score=86.81 Aligned_cols=170 Identities=19% Similarity=0.189 Sum_probs=96.0
Q ss_pred hhhhHhHhcC--CCCeEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEEechhhhcccChHHHHHHHHHHHhcccccc
Q 003802 2 EKMNGYLEAG--LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLI 79 (794)
Q Consensus 2 ~~l~~~l~~~--~~~~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 79 (794)
+++.+|+... ....+.+.|+|++|+||||+|+.+++.+. |+. +-+. .+.... .....+++.......
T Consensus 24 ~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~--~~~-ieln----asd~r~-~~~i~~~i~~~~~~~--- 92 (482)
T PRK04195 24 EQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG--WEV-IELN----ASDQRT-ADVIERVAGEAATSG--- 92 (482)
T ss_pred HHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC--CCE-EEEc----cccccc-HHHHHHHHHHhhccC---
Confidence 4556666532 11267899999999999999999999763 222 2222 121111 122233332211000
Q ss_pred ccchhhhHHHHHHHhcCCeEEEEEcCCCChH------HHHHHhcCCCCCCCCCEEEEEeCCh-hhhh-h-cCcCcEEEcC
Q 003802 80 IWDVHKGINLIRWRLCRKRVLVILDDVDQLE------QLQALVGNHDWFGFGSRIIITSRDE-HVLK-S-HGVTNTYKVR 150 (794)
Q Consensus 80 ~~~~~~~~~~l~~~l~~~r~LlVlDd~~~~~------~~~~l~~~~~~~~~gs~IlvTtR~~-~v~~-~-~~~~~~~~l~ 150 (794)
.....++-+||+|+++... .+..+...+. ..+..||+|+... .... . -.....+++.
T Consensus 93 ------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n~~~~~~~k~Lrsr~~~I~f~ 158 (482)
T PRK04195 93 ------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIK--KAKQPIILTANDPYDPSLRELRNACLMIEFK 158 (482)
T ss_pred ------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHH--cCCCCEEEeccCccccchhhHhccceEEEec
Confidence 0111367899999997653 2444444332 2234455555432 2211 1 1234578999
Q ss_pred CCChHhHHHHHHhhccCCCCCChhHHHHHHHHHHHhCCCchHHHHHhh
Q 003802 151 GLDYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIEVLGS 198 (794)
Q Consensus 151 ~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~a~ 198 (794)
+++.++....+.+.+..... ....++...|++.++|-...+.....
T Consensus 159 ~~~~~~i~~~L~~i~~~egi--~i~~eaL~~Ia~~s~GDlR~ain~Lq 204 (482)
T PRK04195 159 RLSTRSIVPVLKRICRKEGI--ECDDEALKEIAERSGGDLRSAINDLQ 204 (482)
T ss_pred CCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 99999999988877633221 12346788899999997766554333
No 84
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.27 E-value=3.4e-06 Score=87.08 Aligned_cols=74 Identities=23% Similarity=0.558 Sum_probs=43.9
Q ss_pred CCCCCCEEecccccccccccccccCccccccccccccccccccccccCCCCCccEEEecCCCCCCCCCccccCCCCCcEE
Q 003802 444 GVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEEL 523 (794)
Q Consensus 444 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L 523 (794)
.+.+++.|++++|. +..+|. -..+|++|.+++|.....+|..+ .++|++|++++|.....+|. +|+.|
T Consensus 50 ~~~~l~~L~Is~c~-L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe~L 117 (426)
T PRK15386 50 EARASGRLYIKDCD-IESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SVRSL 117 (426)
T ss_pred HhcCCCEEEeCCCC-CcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------ccceE
Confidence 35677777777773 444441 12357777777766666666544 35677777777654444443 35556
Q ss_pred EccCcc
Q 003802 524 DVGGTA 529 (794)
Q Consensus 524 ~l~~~~ 529 (794)
+++++.
T Consensus 118 ~L~~n~ 123 (426)
T PRK15386 118 EIKGSA 123 (426)
T ss_pred EeCCCC
Confidence 665544
No 85
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.26 E-value=9.7e-06 Score=74.02 Aligned_cols=105 Identities=20% Similarity=0.179 Sum_probs=57.6
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEEechhhhcccChHHHHHHHHHHHhccccccccchhhhHHHHHHH
Q 003802 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWR 93 (794)
Q Consensus 14 ~~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~ 93 (794)
..+.+.|+|++|+|||++|+++++.+...-..++++.. ......... ...... . .........
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~----~~~~~~~~~-~~~~~~-~-----------~~~~~~~~~ 80 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNA----SDLLEGLVV-AELFGH-F-----------LVRLLFELA 80 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEeh----hhhhhhhHH-HHHhhh-h-----------hHhHHHHhh
Confidence 35688899999999999999999977543344555541 111110000 000000 0 001111122
Q ss_pred hcCCeEEEEEcCCCCh-----HHHHHHhcCCCCC---CCCCEEEEEeCCh
Q 003802 94 LCRKRVLVILDDVDQL-----EQLQALVGNHDWF---GFGSRIIITSRDE 135 (794)
Q Consensus 94 l~~~r~LlVlDd~~~~-----~~~~~l~~~~~~~---~~gs~IlvTtR~~ 135 (794)
...++.++|+||++.. ..+.......... ..+..||+|+...
T Consensus 81 ~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~ 130 (151)
T cd00009 81 EKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRP 130 (151)
T ss_pred ccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCcc
Confidence 3356789999999864 2233333333221 3577888888864
No 86
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.26 E-value=1.3e-05 Score=86.40 Aligned_cols=164 Identities=18% Similarity=0.248 Sum_probs=97.9
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhhccc--cceEEEEechhhhcccChHHHHHHHHHHHhccccccccchhhhHHHHHHH
Q 003802 16 RFIGICGMGGIGKTTLAKVLYNTLKDQF--EASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWR 93 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~~~~~~f--~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~ 93 (794)
..+.|+|..|+|||.|++.+++.+.... ..++++. ..+...++...+.... ...+.+.+.
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~----------~~~f~~~~~~~l~~~~--------~~~~~~~~~ 203 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS----------GDEFARKAVDILQKTH--------KEIEQFKNE 203 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE----------HHHHHHHHHHHHHHhh--------hHHHHHHHH
Confidence 4588999999999999999999765433 2334544 1123344443322100 112334444
Q ss_pred hcCCeEEEEEcCCCChH---HH-HHHhcCCCC-CCCCCEEEEEeCCh---------hhhhhcCcCcEEEcCCCChHhHHH
Q 003802 94 LCRKRVLVILDDVDQLE---QL-QALVGNHDW-FGFGSRIIITSRDE---------HVLKSHGVTNTYKVRGLDYVEALQ 159 (794)
Q Consensus 94 l~~~r~LlVlDd~~~~~---~~-~~l~~~~~~-~~~gs~IlvTtR~~---------~v~~~~~~~~~~~l~~L~~~ea~~ 159 (794)
++ +.-+||+||+.... .+ +.+...+.. ...|..||+|+... .+...+...-.+++++++.++..+
T Consensus 204 ~~-~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~ 282 (450)
T PRK14087 204 IC-QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATA 282 (450)
T ss_pred hc-cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHH
Confidence 43 33478899995442 22 222221110 12355688886642 222233445578899999999999
Q ss_pred HHHhhccCCCCCChhHHHHHHHHHHHhCCCchHHHHHhh
Q 003802 160 LFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIEVLGS 198 (794)
Q Consensus 160 lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~a~ 198 (794)
++.+++-.........+++..-|++.++|.|..+..+..
T Consensus 283 iL~~~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~ 321 (450)
T PRK14087 283 IIKKEIKNQNIKQEVTEEAINFISNYYSDDVRKIKGSVS 321 (450)
T ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHHH
Confidence 999887332111134457888999999999988776543
No 87
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.25 E-value=1.6e-05 Score=86.81 Aligned_cols=94 Identities=11% Similarity=0.111 Sum_probs=61.3
Q ss_pred CCeEEEEEcCCCChH--HHHHHhcCCCCCCCCCEEE-EEeCChhhhhh-cCcCcEEEcCCCChHhHHHHHHhhccCCCCC
Q 003802 96 RKRVLVILDDVDQLE--QLQALVGNHDWFGFGSRII-ITSRDEHVLKS-HGVTNTYKVRGLDYVEALQLFHLKVSNGKQP 171 (794)
Q Consensus 96 ~~r~LlVlDd~~~~~--~~~~l~~~~~~~~~gs~Il-vTtR~~~v~~~-~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~ 171 (794)
+++-++|+|+++... .++.++..+......+.+| +||....+... ......+++.+++.++..+.+.+.+....
T Consensus 118 g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~eg-- 195 (546)
T PRK14957 118 GRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKEN-- 195 (546)
T ss_pred CCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcC--
Confidence 566799999997664 3666666555434556555 45544444322 33345899999999999888887653221
Q ss_pred ChhHHHHHHHHHHHhCCCch
Q 003802 172 TDYRVELSKYVVNYAGGLPL 191 (794)
Q Consensus 172 ~~~~~~~~~~i~~~~~g~Pl 191 (794)
....++....|++.++|.+.
T Consensus 196 i~~e~~Al~~Ia~~s~GdlR 215 (546)
T PRK14957 196 INSDEQSLEYIAYHAKGSLR 215 (546)
T ss_pred CCCCHHHHHHHHHHcCCCHH
Confidence 12334567789999998764
No 88
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.25 E-value=1.4e-05 Score=78.84 Aligned_cols=151 Identities=15% Similarity=0.167 Sum_probs=85.9
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEEechhhhcccChHHHHHHHHHHHhccccccccchhhhHHHHHHH
Q 003802 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWR 93 (794)
Q Consensus 14 ~~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~ 93 (794)
..+.+.|+|+.|+|||+||+.+++.....-...+++... . .. ... ..
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~----~---~~---~~~-----------------------~~ 87 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAA----S---PL---LAF-----------------------DF 87 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehH----H---hH---HHH-----------------------hh
Confidence 346788999999999999999999654332344555411 1 00 000 01
Q ss_pred hcCCeEEEEEcCCCChHH--HHHHhcCCCC-CCCCC-EEEEEeCChhhhh--------hcCcCcEEEcCCCChHhHHHHH
Q 003802 94 LCRKRVLVILDDVDQLEQ--LQALVGNHDW-FGFGS-RIIITSRDEHVLK--------SHGVTNTYKVRGLDYVEALQLF 161 (794)
Q Consensus 94 l~~~r~LlVlDd~~~~~~--~~~l~~~~~~-~~~gs-~IlvTtR~~~v~~--------~~~~~~~~~l~~L~~~ea~~lf 161 (794)
. ...-++|+||++.... .+.+...+.. ...+. .|++|++...... .+.....+++.++++++-..++
T Consensus 88 ~-~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l 166 (227)
T PRK08903 88 D-PEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAAL 166 (227)
T ss_pred c-ccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHH
Confidence 1 2234788999965432 2222222211 01233 4667766432111 2222458899999998877777
Q ss_pred HhhccCCCCCChhHHHHHHHHHHHhCCCchHHHHHhhhh
Q 003802 162 HLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIEVLGSFL 200 (794)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~a~~L 200 (794)
.+.+.... ....++..+.+++...|.+..+..+...+
T Consensus 167 ~~~~~~~~--v~l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 167 KAAAAERG--LQLADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HHHHHHcC--CCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 66432111 22234667778888888887776655443
No 89
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.24 E-value=2.1e-05 Score=82.90 Aligned_cols=94 Identities=14% Similarity=0.120 Sum_probs=60.7
Q ss_pred CCeEEEEEcCCCChHH--HHHHhcCCCCCCCCCEEEEEeCC-hhhhhh-cCcCcEEEcCCCChHhHHHHHHhhccCCCCC
Q 003802 96 RKRVLVILDDVDQLEQ--LQALVGNHDWFGFGSRIIITSRD-EHVLKS-HGVTNTYKVRGLDYVEALQLFHLKVSNGKQP 171 (794)
Q Consensus 96 ~~r~LlVlDd~~~~~~--~~~l~~~~~~~~~gs~IlvTtR~-~~v~~~-~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~ 171 (794)
+++-++|+|+++.... ...++..+....++..+|++|.+ ..+... .+....+.+.+++.++..+.+.+... .
T Consensus 116 ~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~----~ 191 (394)
T PRK07940 116 GRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDG----V 191 (394)
T ss_pred CCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcC----C
Confidence 4556888999977643 45555544433456666655554 344322 23345899999999999998875431 1
Q ss_pred ChhHHHHHHHHHHHhCCCchHHHHH
Q 003802 172 TDYRVELSKYVVNYAGGLPLAIEVL 196 (794)
Q Consensus 172 ~~~~~~~~~~i~~~~~g~Plai~~~ 196 (794)
..+.+..++..++|.|.....+
T Consensus 192 ---~~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 192 ---DPETARRAARASQGHIGRARRL 213 (394)
T ss_pred ---CHHHHHHHHHHcCCCHHHHHHH
Confidence 1345778899999999655433
No 90
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.22 E-value=0.00012 Score=76.64 Aligned_cols=95 Identities=15% Similarity=0.105 Sum_probs=61.7
Q ss_pred CCeEEEEEcCCCChHH--HHHHhcCCCCCCCCCEEEEEeCCh-hhhhh-cCcCcEEEcCCCChHhHHHHHHhhccCCCCC
Q 003802 96 RKRVLVILDDVDQLEQ--LQALVGNHDWFGFGSRIIITSRDE-HVLKS-HGVTNTYKVRGLDYVEALQLFHLKVSNGKQP 171 (794)
Q Consensus 96 ~~r~LlVlDd~~~~~~--~~~l~~~~~~~~~gs~IlvTtR~~-~v~~~-~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~ 171 (794)
+.+-++|+|+++..+. ...++..+.....++.+|++|... .+... ......+++.+++.++..+++.+.... .
T Consensus 140 ~~~kVviIDead~m~~~aanaLLK~LEepp~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~---~ 216 (365)
T PRK07471 140 GGWRVVIVDTADEMNANAANALLKVLEEPPARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPD---L 216 (365)
T ss_pred CCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhccc---C
Confidence 4667999999976643 555555444334466666666554 33222 233458999999999999999876411 1
Q ss_pred ChhHHHHHHHHHHHhCCCchHHHHH
Q 003802 172 TDYRVELSKYVVNYAGGLPLAIEVL 196 (794)
Q Consensus 172 ~~~~~~~~~~i~~~~~g~Plai~~~ 196 (794)
. .+....++..++|.|..+..+
T Consensus 217 ~---~~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 217 P---DDPRAALAALAEGSVGRALRL 238 (365)
T ss_pred C---HHHHHHHHHHcCCCHHHHHHH
Confidence 1 122367899999999866544
No 91
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.21 E-value=3.6e-05 Score=80.55 Aligned_cols=170 Identities=16% Similarity=0.211 Sum_probs=92.3
Q ss_pred hhhHhHhcCCCCeEEEEEEccCCCcHHHHHHHHHHHhhc-cccceEEEEechhhhcccChHHHHHHHHHHHhcccccccc
Q 003802 3 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKD-QFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIW 81 (794)
Q Consensus 3 ~l~~~l~~~~~~~~vi~i~G~~GvGKTtLa~~v~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 81 (794)
.+.+++.. ...+.+.|+|+.|+|||++|+.+++.... .+.. .++... .+..... ....+.+........
T Consensus 28 ~l~~~i~~--~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~-~~i~~~--~~~~~~~-~~~~~~i~~~~~~~~---- 97 (319)
T PRK00440 28 RLKSYVKE--KNMPHLLFAGPPGTGKTTAALALARELYGEDWRE-NFLELN--ASDERGI-DVIRNKIKEFARTAP---- 97 (319)
T ss_pred HHHHHHhC--CCCCeEEEECCCCCCHHHHHHHHHHHHcCCcccc-ceEEec--cccccch-HHHHHHHHHHHhcCC----
Confidence 44455544 23445799999999999999999986532 2221 122210 1111111 111111111110000
Q ss_pred chhhhHHHHHHHhcCCeEEEEEcCCCChH--HHHHHhcCCCCCCCCCEEEEEeCCh-hhhh-hcCcCcEEEcCCCChHhH
Q 003802 82 DVHKGINLIRWRLCRKRVLVILDDVDQLE--QLQALVGNHDWFGFGSRIIITSRDE-HVLK-SHGVTNTYKVRGLDYVEA 157 (794)
Q Consensus 82 ~~~~~~~~l~~~l~~~r~LlVlDd~~~~~--~~~~l~~~~~~~~~gs~IlvTtR~~-~v~~-~~~~~~~~~l~~L~~~ea 157 (794)
.....+-++|+|+++... ....+...+......+++|+++... .+.. .......+++.++++++.
T Consensus 98 -----------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~l~~~ei 166 (319)
T PRK00440 98 -----------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVFRFSPLKKEAV 166 (319)
T ss_pred -----------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhheeeeCCCCHHHH
Confidence 001245689999987553 3444444433334456677766432 2211 112234789999999999
Q ss_pred HHHHHhhccCCCCCChhHHHHHHHHHHHhCCCchHHHH
Q 003802 158 LQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIEV 195 (794)
Q Consensus 158 ~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 195 (794)
..++...+..... ...++.+..+++.++|.+.-+..
T Consensus 167 ~~~l~~~~~~~~~--~i~~~al~~l~~~~~gd~r~~~~ 202 (319)
T PRK00440 167 AERLRYIAENEGI--EITDDALEAIYYVSEGDMRKAIN 202 (319)
T ss_pred HHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHH
Confidence 9988887632221 22346788899999998766443
No 92
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.20 E-value=3.7e-07 Score=87.11 Aligned_cols=84 Identities=20% Similarity=0.175 Sum_probs=62.6
Q ss_pred CCCCceEEEcCCCCcccc---cccccccccCceeccCCCcCccCCCCC-CCCCCCCEEeccccccccc-ccccccCcccc
Q 003802 398 RPEKLFKLNLCNSRIKYL---WKGIKPLKELKFMNLSHSCNLIRTPDF-TGVPNLERLNLEGCTRLLE-VHQSVGTLKRL 472 (794)
Q Consensus 398 ~~~~L~~L~L~~n~i~~l---~~~~~~l~~L~~L~L~~n~~~~~~~~~-~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L 472 (794)
..+.++.+||.+|.|+.- -.-+.++|+|++|+|+.|++...+... ....+|++|-|.|..+... ....+..+|.+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 356888999999988743 333678999999999999887666654 4677899999988655432 23456778888
Q ss_pred ccccccccc
Q 003802 473 ILLNLKDCR 481 (794)
Q Consensus 473 ~~L~l~~n~ 481 (794)
+.|.+|.|.
T Consensus 149 telHmS~N~ 157 (418)
T KOG2982|consen 149 TELHMSDNS 157 (418)
T ss_pred hhhhhccch
Confidence 888888764
No 93
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.19 E-value=4.2e-05 Score=82.96 Aligned_cols=97 Identities=16% Similarity=0.204 Sum_probs=65.4
Q ss_pred CCeEEEEEcCCCCh--HHHHHHhcCCCCCCCCCEEEE-EeCChhhhhhc-CcCcEEEcCCCChHhHHHHHHhhccCCCCC
Q 003802 96 RKRVLVILDDVDQL--EQLQALVGNHDWFGFGSRIII-TSRDEHVLKSH-GVTNTYKVRGLDYVEALQLFHLKVSNGKQP 171 (794)
Q Consensus 96 ~~r~LlVlDd~~~~--~~~~~l~~~~~~~~~gs~Ilv-TtR~~~v~~~~-~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~ 171 (794)
+++-++|+|+++.. ..++.++..+....+.+.+|+ ||+...+.... .....+++.+++.++..+++.+.+....
T Consensus 127 ~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~eg-- 204 (507)
T PRK06645 127 GKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQEN-- 204 (507)
T ss_pred CCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcC--
Confidence 56778999999875 347777766654445666554 55544544333 2345789999999999999998874322
Q ss_pred ChhHHHHHHHHHHHhCCCchHHH
Q 003802 172 TDYRVELSKYVVNYAGGLPLAIE 194 (794)
Q Consensus 172 ~~~~~~~~~~i~~~~~g~Plai~ 194 (794)
.....+....|++.++|.+.-+.
T Consensus 205 i~ie~eAL~~Ia~~s~GslR~al 227 (507)
T PRK06645 205 LKTDIEALRIIAYKSEGSARDAV 227 (507)
T ss_pred CCCCHHHHHHHHHHcCCCHHHHH
Confidence 12234567789999999875543
No 94
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.19 E-value=3.6e-08 Score=104.91 Aligned_cols=127 Identities=25% Similarity=0.239 Sum_probs=64.7
Q ss_pred cccccccccccccccccccCCCCCccEEEecCCCCCCCCCccccCCCCCcEEEccCccCcccCcccccCCCCCEEEcCCC
Q 003802 472 LILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPPSIVQLVNLKIFSLHGC 551 (794)
Q Consensus 472 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~ 551 (794)
|...+.++|. ...+..++.-++.|+.|+|++|++...- .+..++.|++|||++|.+..+|..-..-.+|+.|.+++|
T Consensus 166 L~~a~fsyN~-L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN 242 (1096)
T KOG1859|consen 166 LATASFSYNR-LVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNN 242 (1096)
T ss_pred Hhhhhcchhh-HHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhhheeeeeccc
Confidence 3333444433 2233344445566666666666555422 455666666666666666655532111112666666655
Q ss_pred CCCCCccccccchhccccCCCCCCCccccCCCCCCCCCCCEEecCCCCCccCCCCccccCCCCCCeEeCCCCCCc
Q 003802 552 KGQPPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFF 626 (794)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~ 626 (794)
. ...+..+.++.+|+.||+++|-+....-...+..+..|+.|+|.+|.+-
T Consensus 243 ~-------------------------l~tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 243 A-------------------------LTTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred H-------------------------HHhhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 4 2223335556666666666665333222333444556666666666544
No 95
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.17 E-value=6.8e-07 Score=85.39 Aligned_cols=209 Identities=18% Similarity=0.166 Sum_probs=116.6
Q ss_pred CCCCCCEEecccccccc--cccccccCccccccccccccccccccccccCCCCCccEEEecCCCCCCC-CCccccCCCCC
Q 003802 444 GVPNLERLNLEGCTRLL--EVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEK-LPQDLGEVECL 520 (794)
Q Consensus 444 ~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~~~~~~~-~~~~~~~l~~L 520 (794)
.++.++.|||.+|.++. ++..-+.++|.|+.|+++.|.+...+...-....+|++|-|.+..+... ....+..+|.+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 35667777777766542 2333455677777777777665433221112345667777766544322 22334556666
Q ss_pred cEEEccCccCcccC---ccccc-CCCCCEEEcCCCCCCCCccccccchhccccCCCCCCCccccCCC-CCCCCCCCEEec
Q 003802 521 EELDVGGTAIRQIP---PSIVQ-LVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPR-FTGLSSLQTLDL 595 (794)
Q Consensus 521 ~~L~l~~~~l~~l~---~~l~~-l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~~L~l 595 (794)
++|+++.|++..+- ..... -+.+++|....|... . ...... -.-+|++..+-+
T Consensus 149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~--~--------------------w~~~~~l~r~Fpnv~sv~v 206 (418)
T KOG2982|consen 149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQ--L--------------------WLNKNKLSRIFPNVNSVFV 206 (418)
T ss_pred hhhhhccchhhhhccccccccccchhhhhhhcCCcHHH--H--------------------HHHHHhHHhhcccchheee
Confidence 66666666443221 00111 123444444443300 0 000001 123678888888
Q ss_pred CCCCCccCCCCccccCCCCCCeEeCCCCCCccCc--hhhhccCCCCEEecCCCcCCCCCCCCCccccccccccccccccc
Q 003802 596 SDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLP--SSINQLLKLKILCLEKCRNLKSLPELPPEIVFVGAEDCTSLETI 673 (794)
Q Consensus 596 ~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp--~~l~~l~~L~~L~L~~n~~~~~~~~~~~~L~~L~l~~~~~L~~l 673 (794)
..|.+.+......+..++.+--|+|+.++|.+.. ..+..++.|..|.++++++...+.. ..=+.|-+..+++++.|
T Consensus 207 ~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~--~err~llIaRL~~v~vL 284 (418)
T KOG2982|consen 207 CEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRG--GERRFLLIARLTKVQVL 284 (418)
T ss_pred ecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccC--CcceEEEEeeccceEEe
Confidence 8887655445556677888888999999887443 3578889999999999997766543 11122344556666666
Q ss_pred ccc
Q 003802 674 SAF 676 (794)
Q Consensus 674 ~~~ 676 (794)
+.+
T Consensus 285 NGs 287 (418)
T KOG2982|consen 285 NGS 287 (418)
T ss_pred cCc
Confidence 443
No 96
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.17 E-value=6e-05 Score=80.18 Aligned_cols=100 Identities=13% Similarity=0.121 Sum_probs=64.3
Q ss_pred CCeEEEEEcCCCCh--HHHHHHhcCCCCCCCCCEEEEEeCChh-hhhh-cCcCcEEEcCCCChHhHHHHHHhhccCCCCC
Q 003802 96 RKRVLVILDDVDQL--EQLQALVGNHDWFGFGSRIIITSRDEH-VLKS-HGVTNTYKVRGLDYVEALQLFHLKVSNGKQP 171 (794)
Q Consensus 96 ~~r~LlVlDd~~~~--~~~~~l~~~~~~~~~gs~IlvTtR~~~-v~~~-~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~ 171 (794)
+++-++|+|+++.. .....+...+......+.+|++|.+.. +... ......+++.++++++..+++..++-....
T Consensus 116 ~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~- 194 (355)
T TIGR02397 116 GKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGI- 194 (355)
T ss_pred CCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCC-
Confidence 45568899998765 446666665543345666666665432 2222 223457889999999999999887632211
Q ss_pred ChhHHHHHHHHHHHhCCCchHHHHHh
Q 003802 172 TDYRVELSKYVVNYAGGLPLAIEVLG 197 (794)
Q Consensus 172 ~~~~~~~~~~i~~~~~g~Plai~~~a 197 (794)
...++.+..+++.++|.|..+....
T Consensus 195 -~i~~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 195 -KIEDEALELIARAADGSLRDALSLL 219 (355)
T ss_pred -CCCHHHHHHHHHHcCCChHHHHHHH
Confidence 2234677889999999987665443
No 97
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.17 E-value=2.9e-05 Score=88.07 Aligned_cols=150 Identities=24% Similarity=0.356 Sum_probs=87.0
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEEechhhhcccChHHHHHHHHHHHhccccccccchhhhHHHHHHH
Q 003802 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWR 93 (794)
Q Consensus 14 ~~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~ 93 (794)
....+.|+|++|+||||+|+.+++.....|. .+.. . ...+.+ .++++ ....+.
T Consensus 51 ~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~---~lna----~-~~~i~d-ir~~i------------------~~a~~~ 103 (725)
T PRK13341 51 RVGSLILYGPPGVGKTTLARIIANHTRAHFS---SLNA----V-LAGVKD-LRAEV------------------DRAKER 103 (725)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhcCcce---eehh----h-hhhhHH-HHHHH------------------HHHHHH
Confidence 4556789999999999999999997765542 1210 0 001111 11111 111111
Q ss_pred h--cCCeEEEEEcCCCCh--HHHHHHhcCCCCCCCCCEEEEE--eCCh--hhhhh-cCcCcEEEcCCCChHhHHHHHHhh
Q 003802 94 L--CRKRVLVILDDVDQL--EQLQALVGNHDWFGFGSRIIIT--SRDE--HVLKS-HGVTNTYKVRGLDYVEALQLFHLK 164 (794)
Q Consensus 94 l--~~~r~LlVlDd~~~~--~~~~~l~~~~~~~~~gs~IlvT--tR~~--~v~~~-~~~~~~~~l~~L~~~ea~~lf~~~ 164 (794)
+ .+++.++||||++.. ...+.+.+... .|..++|+ |.+. .+... ......+++++++.++...++.+.
T Consensus 104 l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~~aL~SR~~v~~l~pLs~edi~~IL~~~ 180 (725)
T PRK13341 104 LERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVNKALVSRSRLFRLKSLSDEDLHQLLKRA 180 (725)
T ss_pred hhhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhhhHhhccccceecCCCCHHHHHHHHHHH
Confidence 1 246789999999754 44666665443 35555554 3332 12111 223457899999999999999876
Q ss_pred ccC-----CCCCChhHHHHHHHHHHHhCCCchHH
Q 003802 165 VSN-----GKQPTDYRVELSKYVVNYAGGLPLAI 193 (794)
Q Consensus 165 ~~~-----~~~~~~~~~~~~~~i~~~~~g~Plai 193 (794)
+.. +.......++..+.|++.+.|....+
T Consensus 181 l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R~l 214 (725)
T PRK13341 181 LQDKERGYGDRKVDLEPEAEKHLVDVANGDARSL 214 (725)
T ss_pred HHHHHhhcCCcccCCCHHHHHHHHHhCCCCHHHH
Confidence 531 01112233466778888888865433
No 98
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.17 E-value=4.2e-05 Score=83.66 Aligned_cols=98 Identities=10% Similarity=0.101 Sum_probs=61.8
Q ss_pred CCeEEEEEcCCCChH--HHHHHhcCCCCCCCCCEEEEEeCC-hhhhhh-cCcCcEEEcCCCChHhHHHHHHhhccCCCCC
Q 003802 96 RKRVLVILDDVDQLE--QLQALVGNHDWFGFGSRIIITSRD-EHVLKS-HGVTNTYKVRGLDYVEALQLFHLKVSNGKQP 171 (794)
Q Consensus 96 ~~r~LlVlDd~~~~~--~~~~l~~~~~~~~~gs~IlvTtR~-~~v~~~-~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~ 171 (794)
++.-++|+|+++... ..+.++..+......+++|++|.+ ..+... .+....+++.+++.++....+...+.....
T Consensus 118 ~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi- 196 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENV- 196 (509)
T ss_pred CCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCC-
Confidence 566789999998753 466666655444456766665543 333322 223347889999999988887766532221
Q ss_pred ChhHHHHHHHHHHHhCCCchHHHH
Q 003802 172 TDYRVELSKYVVNYAGGLPLAIEV 195 (794)
Q Consensus 172 ~~~~~~~~~~i~~~~~g~Plai~~ 195 (794)
....+....|++.++|.+..+..
T Consensus 197 -~~~~~al~~ia~~s~GslR~al~ 219 (509)
T PRK14958 197 -EFENAALDLLARAANGSVRDALS 219 (509)
T ss_pred -CCCHHHHHHHHHHcCCcHHHHHH
Confidence 12235577889999998865543
No 99
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.15 E-value=4e-08 Score=98.18 Aligned_cols=271 Identities=21% Similarity=0.239 Sum_probs=142.6
Q ss_pred CCCceEEEcCCCC-cc--cccccccccccCceeccCCCcCccCCC--C-CCCCCCCCEEeccccccccc--ccccccCcc
Q 003802 399 PEKLFKLNLCNSR-IK--YLWKGIKPLKELKFMNLSHSCNLIRTP--D-FTGVPNLERLNLEGCTRLLE--VHQSVGTLK 470 (794)
Q Consensus 399 ~~~L~~L~L~~n~-i~--~l~~~~~~l~~L~~L~L~~n~~~~~~~--~-~~~l~~L~~L~l~~~~~~~~--~~~~~~~l~ 470 (794)
.+++++|++.++. ++ .+-..-..+++|++|++..|...+... . ..++++|++|++++|.-+.. +.....++.
T Consensus 163 CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~ 242 (483)
T KOG4341|consen 163 CPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCK 242 (483)
T ss_pred CCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccch
Confidence 4466666666554 11 111112357778888877765444322 1 34577888888888765433 112344556
Q ss_pred ccccccccccccccc--cccccCCCCCccEEEecCCCCCCCCC--ccccCCCCCcEEEccCcc-Ccc--cCcccccCCCC
Q 003802 471 RLILLNLKDCRNLVS--FPKNVCLMKSLKILCLCGCLKLEKLP--QDLGEVECLEELDVGGTA-IRQ--IPPSIVQLVNL 543 (794)
Q Consensus 471 ~L~~L~l~~n~~~~~--~~~~~~~l~~L~~L~L~~~~~~~~~~--~~~~~l~~L~~L~l~~~~-l~~--l~~~l~~l~~L 543 (794)
.++.+.+++|.-.+. +-..-+.+..+..+++..|...+... ..-..+..|+.|+.+++. ++. +-.-..++++|
T Consensus 243 ~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L 322 (483)
T KOG4341|consen 243 ELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNL 322 (483)
T ss_pred hhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCce
Confidence 666666666543221 11111334445566666665443221 112346677777777653 331 11122457788
Q ss_pred CEEEcCCCCCCCCccccccchhccccCCCCCCCccccCCC-CCCCCCCCEEecCCCCCccCC-CCccccCCCCCCeEeCC
Q 003802 544 KIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPR-FTGLSSLQTLDLSDCNLLEGA-IPSDIGSLFSLEAIDLS 621 (794)
Q Consensus 544 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~~L~l~~n~~~~~~-~~~~~~~l~~L~~L~L~ 621 (794)
+.|-+++|...... .+.. -.+++.|+.+++..+....+. +-..-.+++.|+.|.|+
T Consensus 323 ~~l~l~~c~~fsd~----------------------~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lsls 380 (483)
T KOG4341|consen 323 QVLELSGCQQFSDR----------------------GFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLS 380 (483)
T ss_pred EEEeccccchhhhh----------------------hhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChh
Confidence 88888877621110 1111 235667777887777654433 22333467788888888
Q ss_pred CCCC-ccC-----chhhhccCCCCEEecCCCcCCCCCCCCCccccccccccccccccccccccccCC-CCceEEEeCCCC
Q 003802 622 GNNF-FSL-----PSSINQLLKLKILCLEKCRNLKSLPELPPEIVFVGAEDCTSLETISAFAKLSRS-PNIALNFLNCFK 694 (794)
Q Consensus 622 ~n~l-~~l-----p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~n~~~~-~~~~~~~~~~~~ 694 (794)
+|.+ +.. ...-..+..|+.+.|++|+.+.+- .|+. +..|++|+.+++.+-...+ ..+.....+||+
T Consensus 381 hce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~-----~Le~--l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~ 453 (483)
T KOG4341|consen 381 HCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDA-----TLEH--LSICRNLERIELIDCQDVTKEAISRFATHLPN 453 (483)
T ss_pred hhhhhhhhhhhhhhhccccccccceeeecCCCCchHH-----HHHH--HhhCcccceeeeechhhhhhhhhHHHHhhCcc
Confidence 7743 211 222345667888888888765431 2332 3567777777665442222 223334456666
Q ss_pred chhh
Q 003802 695 LVED 698 (794)
Q Consensus 695 L~~L 698 (794)
++..
T Consensus 454 i~v~ 457 (483)
T KOG4341|consen 454 IKVH 457 (483)
T ss_pred ceeh
Confidence 6543
No 100
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.14 E-value=4.5e-05 Score=84.19 Aligned_cols=99 Identities=15% Similarity=0.143 Sum_probs=62.9
Q ss_pred CCeEEEEEcCCCChHH--HHHHhcCCCCCCCCCEEEEEeCC-hhhhhh-cCcCcEEEcCCCChHhHHHHHHhhccCCCCC
Q 003802 96 RKRVLVILDDVDQLEQ--LQALVGNHDWFGFGSRIIITSRD-EHVLKS-HGVTNTYKVRGLDYVEALQLFHLKVSNGKQP 171 (794)
Q Consensus 96 ~~r~LlVlDd~~~~~~--~~~l~~~~~~~~~gs~IlvTtR~-~~v~~~-~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~ 171 (794)
+++-++|||+++.... ...++..+......+++|++|.+ ..+... .+....+++.+++.++....+.+.+....
T Consensus 118 gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEg-- 195 (709)
T PRK08691 118 GKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEK-- 195 (709)
T ss_pred CCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcC--
Confidence 5667899999987653 44555544333345666666654 332221 22334688889999999999988763322
Q ss_pred ChhHHHHHHHHHHHhCCCchHHHHH
Q 003802 172 TDYRVELSKYVVNYAGGLPLAIEVL 196 (794)
Q Consensus 172 ~~~~~~~~~~i~~~~~g~Plai~~~ 196 (794)
.....+....|++.++|.+.-+...
T Consensus 196 i~id~eAL~~Ia~~A~GslRdAlnL 220 (709)
T PRK08691 196 IAYEPPALQLLGRAAAGSMRDALSL 220 (709)
T ss_pred CCcCHHHHHHHHHHhCCCHHHHHHH
Confidence 1233466788999999988555443
No 101
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.13 E-value=0.00011 Score=78.98 Aligned_cols=97 Identities=11% Similarity=0.096 Sum_probs=64.4
Q ss_pred CCeEEEEEcCCCChH--HHHHHhcCCCCCCCCCEEEEEeC-Chhhhhh-cCcCcEEEcCCCChHhHHHHHHhhccCCCCC
Q 003802 96 RKRVLVILDDVDQLE--QLQALVGNHDWFGFGSRIIITSR-DEHVLKS-HGVTNTYKVRGLDYVEALQLFHLKVSNGKQP 171 (794)
Q Consensus 96 ~~r~LlVlDd~~~~~--~~~~l~~~~~~~~~gs~IlvTtR-~~~v~~~-~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~ 171 (794)
+++-++|+|+++... ..+.++..+....+.+++|++|. ...+... ......+++.+++.++..+.+.+.+....
T Consensus 115 ~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Eg-- 192 (491)
T PRK14964 115 SKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKEN-- 192 (491)
T ss_pred CCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcC--
Confidence 466789999997653 36666665554456676666554 3444332 23345789999999999999988763322
Q ss_pred ChhHHHHHHHHHHHhCCCchHHH
Q 003802 172 TDYRVELSKYVVNYAGGLPLAIE 194 (794)
Q Consensus 172 ~~~~~~~~~~i~~~~~g~Plai~ 194 (794)
....++....|++.++|.+..+.
T Consensus 193 i~i~~eAL~lIa~~s~GslR~al 215 (491)
T PRK14964 193 IEHDEESLKLIAENSSGSMRNAL 215 (491)
T ss_pred CCCCHHHHHHHHHHcCCCHHHHH
Confidence 12334667789999999876443
No 102
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.12 E-value=2.5e-05 Score=86.64 Aligned_cols=100 Identities=12% Similarity=0.125 Sum_probs=64.6
Q ss_pred cCCeEEEEEcCCCChH--HHHHHhcCCCCCCCCCEEEE-EeCChhhhhh-cCcCcEEEcCCCChHhHHHHHHhhccCCCC
Q 003802 95 CRKRVLVILDDVDQLE--QLQALVGNHDWFGFGSRIII-TSRDEHVLKS-HGVTNTYKVRGLDYVEALQLFHLKVSNGKQ 170 (794)
Q Consensus 95 ~~~r~LlVlDd~~~~~--~~~~l~~~~~~~~~gs~Ilv-TtR~~~v~~~-~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~ 170 (794)
.+++-++|||+++... ..+.++..+.......++|+ ||....+... ......+++.+++.++..+.+.+.+....
T Consensus 117 ~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~- 195 (647)
T PRK07994 117 RGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRQQLEHILQAEQ- 195 (647)
T ss_pred cCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchHHHhhheEeeCCCCCHHHHHHHHHHHHHHcC-
Confidence 3577799999997664 46666555443344555554 4444444322 33346899999999999999987652221
Q ss_pred CChhHHHHHHHHHHHhCCCchHHHHH
Q 003802 171 PTDYRVELSKYVVNYAGGLPLAIEVL 196 (794)
Q Consensus 171 ~~~~~~~~~~~i~~~~~g~Plai~~~ 196 (794)
.....+....|++.++|.+..+..+
T Consensus 196 -i~~e~~aL~~Ia~~s~Gs~R~Al~l 220 (647)
T PRK07994 196 -IPFEPRALQLLARAADGSMRDALSL 220 (647)
T ss_pred -CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 1223456778999999988655444
No 103
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.11 E-value=8.5e-07 Score=83.59 Aligned_cols=196 Identities=14% Similarity=0.085 Sum_probs=112.2
Q ss_pred cCCCCCccEEEecCCCCCCCCCcc----ccCCCCCcEEEccCccCcccCc--------------ccccCCCCCEEEcCCC
Q 003802 490 VCLMKSLKILCLCGCLKLEKLPQD----LGEVECLEELDVGGTAIRQIPP--------------SIVQLVNLKIFSLHGC 551 (794)
Q Consensus 490 ~~~l~~L~~L~L~~~~~~~~~~~~----~~~l~~L~~L~l~~~~l~~l~~--------------~l~~l~~L~~L~l~~~ 551 (794)
+.+|+.|+..+|+.|.+....|+. +.+-+.|.+|.+++|.+..+.. -..+-|.|++.....|
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN 167 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN 167 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc
Confidence 445666666666666665555443 3455667777777776552211 1123456777777666
Q ss_pred CCC-CCccccccchhccccCCCCCCCccccCCCCCCCCCCCEEecCCCCCccCCC----CccccCCCCCCeEeCCCCCCc
Q 003802 552 KGQ-PPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAI----PSDIGSLFSLEAIDLSGNNFF 626 (794)
Q Consensus 552 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~----~~~~~~l~~L~~L~L~~n~l~ 626 (794)
+.. .+.. .....+....+|+.+.+..|.+-...+ ...+..+.+|+.|||..|-++
T Consensus 168 Rlengs~~--------------------~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft 227 (388)
T COG5238 168 RLENGSKE--------------------LSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFT 227 (388)
T ss_pred hhccCcHH--------------------HHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchh
Confidence 511 1100 000113344688999999887422111 112356789999999999777
Q ss_pred cC-----chhhhccCCCCEEecCCCcCCCCCCCCCccccccccccccccccccccccccCCCCceE------EEeCCCCc
Q 003802 627 SL-----PSSINQLLKLKILCLEKCRNLKSLPELPPEIVFVGAEDCTSLETISAFAKLSRSPNIAL------NFLNCFKL 695 (794)
Q Consensus 627 ~l-----p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~n~~~~~~~~~------~~~~~~~L 695 (794)
.. ...+...+.|+.|.+..|-+...= .-.-++...=...|+|..|...+|....+.+.. .-.+.|-|
T Consensus 228 ~~gS~~La~al~~W~~lrEL~lnDClls~~G--~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L 305 (388)
T COG5238 228 LEGSRYLADALCEWNLLRELRLNDCLLSNEG--VKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLL 305 (388)
T ss_pred hhhHHHHHHHhcccchhhhccccchhhcccc--HHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHH
Confidence 32 223455567899999988643221 011111112223577888888777444433332 23478889
Q ss_pred hhhhhhhhhHHH
Q 003802 696 VEDQVSKDNLAV 707 (794)
Q Consensus 696 ~~L~l~~N~l~~ 707 (794)
..|.+.+|.+..
T Consensus 306 ~~le~ngNr~~E 317 (388)
T COG5238 306 VDLERNGNRIKE 317 (388)
T ss_pred HHHHHccCcchh
Confidence 999999998863
No 104
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.10 E-value=2.5e-05 Score=84.26 Aligned_cols=159 Identities=16% Similarity=0.154 Sum_probs=91.8
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhhcccc--ceEEEEechhhhcccChHHHHHHHHHHHhccccccccchhhhHHHHHH
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFE--ASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRW 92 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~ 92 (794)
..-+.|+|+.|+|||+|++.+++.+.+.++ .++|++ . .+...++...+... . ...+.+
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~----~------~~f~~~~~~~~~~~------~----~~~f~~ 189 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT----S------EKFLNDLVDSMKEG------K----LNEFRE 189 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE----H------HHHHHHHHHHHhcc------c----HHHHHH
Confidence 345899999999999999999998766543 345554 1 12233333332111 1 222333
Q ss_pred HhcCCeEEEEEcCCCChH---HH-HHHhcCCCC-CCCCCEEEEEeC-Chhh--------hhhcCcCcEEEcCCCChHhHH
Q 003802 93 RLCRKRVLVILDDVDQLE---QL-QALVGNHDW-FGFGSRIIITSR-DEHV--------LKSHGVTNTYKVRGLDYVEAL 158 (794)
Q Consensus 93 ~l~~~r~LlVlDd~~~~~---~~-~~l~~~~~~-~~~gs~IlvTtR-~~~v--------~~~~~~~~~~~l~~L~~~ea~ 158 (794)
....+.-+||+||++... .+ +.+...+.. ...|..||+||. ...- ...+.....+++++.+.+.-.
T Consensus 190 ~~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~ 269 (440)
T PRK14088 190 KYRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRK 269 (440)
T ss_pred HHHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHH
Confidence 333345689999996431 11 122211110 023557888875 3221 112233457889999999999
Q ss_pred HHHHhhccCCCCCChhHHHHHHHHHHHhCCCchHHHH
Q 003802 159 QLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIEV 195 (794)
Q Consensus 159 ~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 195 (794)
.++++.+.... ....+++...|++.+.|.-..+.-
T Consensus 270 ~IL~~~~~~~~--~~l~~ev~~~Ia~~~~~~~R~L~g 304 (440)
T PRK14088 270 KIARKMLEIEH--GELPEEVLNFVAENVDDNLRRLRG 304 (440)
T ss_pred HHHHHHHHhcC--CCCCHHHHHHHHhccccCHHHHHH
Confidence 99988873221 223346778888888776554443
No 105
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.10 E-value=4.5e-05 Score=81.97 Aligned_cols=152 Identities=13% Similarity=0.116 Sum_probs=86.3
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhhccccceEEEEechhhhcccChHHHHHHHHHHHhccccccccchhhhHHHHHHHhc
Q 003802 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWRLC 95 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~ 95 (794)
.-+.|+|+.|+|||+|++.+++.+......++++. . .....++...+... ..+.+++..+
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~----~------~~f~~~~~~~l~~~----------~~~~f~~~~~ 201 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVR----S------ELFTEHLVSAIRSG----------EMQRFRQFYR 201 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEee----H------HHHHHHHHHHHhcc----------hHHHHHHHcc
Confidence 56789999999999999999997765444456664 1 11222333332110 1223444443
Q ss_pred CCeEEEEEcCCCChHH----HHHHhcCCCC-CCCCCEEEEEeCCh-h--------hhhhcCcCcEEEcCCCChHhHHHHH
Q 003802 96 RKRVLVILDDVDQLEQ----LQALVGNHDW-FGFGSRIIITSRDE-H--------VLKSHGVTNTYKVRGLDYVEALQLF 161 (794)
Q Consensus 96 ~~r~LlVlDd~~~~~~----~~~l~~~~~~-~~~gs~IlvTtR~~-~--------v~~~~~~~~~~~l~~L~~~ea~~lf 161 (794)
+.-+|++||++.... .+.+...+.. ...|..||+||... . +...+.....+++.+++.++...++
T Consensus 202 -~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL 280 (445)
T PRK12422 202 -NVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFL 280 (445)
T ss_pred -cCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHH
Confidence 345888899855421 1122211100 02355688887542 1 1222333457899999999999999
Q ss_pred HhhccCCCCCChhHHHHHHHHHHHhCCCc
Q 003802 162 HLKVSNGKQPTDYRVELSKYVVNYAGGLP 190 (794)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 190 (794)
.+.+.... ....+++..-|+..+.+.-
T Consensus 281 ~~k~~~~~--~~l~~evl~~la~~~~~di 307 (445)
T PRK12422 281 ERKAEALS--IRIEETALDFLIEALSSNV 307 (445)
T ss_pred HHHHHHcC--CCCCHHHHHHHHHhcCCCH
Confidence 88773321 1223455666777666543
No 106
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.09 E-value=3.4e-05 Score=83.18 Aligned_cols=157 Identities=13% Similarity=0.184 Sum_probs=89.7
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhhcccc--ceEEEEechhhhcccChHHHHHHHHHHHhccccccccchhhhHHHHHH
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFE--ASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRW 92 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~ 92 (794)
...+.|+|+.|+|||.|++.+++.+.+..+ .++|+. . .+...++...+... . ...+.+
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~----~------~~~~~~~~~~~~~~------~----~~~~~~ 195 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS----S------EKFTNDFVNALRNN------K----MEEFKE 195 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE----H------HHHHHHHHHHHHcC------C----HHHHHH
Confidence 356889999999999999999997766543 345554 1 11222333332111 1 222333
Q ss_pred HhcCCeEEEEEcCCCChH---H-HHHHhcCCCC-CCCCCEEEEEeCCh-h--------hhhhcCcCcEEEcCCCChHhHH
Q 003802 93 RLCRKRVLVILDDVDQLE---Q-LQALVGNHDW-FGFGSRIIITSRDE-H--------VLKSHGVTNTYKVRGLDYVEAL 158 (794)
Q Consensus 93 ~l~~~r~LlVlDd~~~~~---~-~~~l~~~~~~-~~~gs~IlvTtR~~-~--------v~~~~~~~~~~~l~~L~~~ea~ 158 (794)
.+++ .-+|||||++... . .+.+...+.. ...+..||+|+... . +...+.....+++++.+.++-.
T Consensus 196 ~~~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~ 274 (405)
T TIGR00362 196 KYRS-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRL 274 (405)
T ss_pred HHHh-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHH
Confidence 3332 3488899996432 1 1222221110 02355677777642 1 1112223346889999999999
Q ss_pred HHHHhhccCCCCCChhHHHHHHHHHHHhCCCchHHH
Q 003802 159 QLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIE 194 (794)
Q Consensus 159 ~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~ 194 (794)
.++.+.+.... ....+++...|++.+.|....+.
T Consensus 275 ~il~~~~~~~~--~~l~~e~l~~ia~~~~~~~r~l~ 308 (405)
T TIGR00362 275 AILQKKAEEEG--LELPDEVLEFIAKNIRSNVRELE 308 (405)
T ss_pred HHHHHHHHHcC--CCCCHHHHHHHHHhcCCCHHHHH
Confidence 99998874322 22234677788888887765544
No 107
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.09 E-value=0.00019 Score=77.75 Aligned_cols=101 Identities=16% Similarity=0.136 Sum_probs=62.0
Q ss_pred CCeEEEEEcCCCChH--HHHHHhcCCCCCCCCCEEEE-EeCChhhhhhc-CcCcEEEcCCCChHhHHHHHHhhccCCCCC
Q 003802 96 RKRVLVILDDVDQLE--QLQALVGNHDWFGFGSRIII-TSRDEHVLKSH-GVTNTYKVRGLDYVEALQLFHLKVSNGKQP 171 (794)
Q Consensus 96 ~~r~LlVlDd~~~~~--~~~~l~~~~~~~~~gs~Ilv-TtR~~~v~~~~-~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~ 171 (794)
+++-++|+|+++... ..+.++..+........+|+ |+....+.... .....+++.+++.++....+.+.+....
T Consensus 116 ~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~eg-- 193 (472)
T PRK14962 116 GKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEG-- 193 (472)
T ss_pred CCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcC--
Confidence 466799999997663 35566655543333444444 44334443332 3345889999999999999888763221
Q ss_pred ChhHHHHHHHHHHHhCCC-chHHHHHhh
Q 003802 172 TDYRVELSKYVVNYAGGL-PLAIEVLGS 198 (794)
Q Consensus 172 ~~~~~~~~~~i~~~~~g~-Plai~~~a~ 198 (794)
-...++....|++.++|- +.++..+..
T Consensus 194 i~i~~eal~~Ia~~s~GdlR~aln~Le~ 221 (472)
T PRK14962 194 IEIDREALSFIAKRASGGLRDALTMLEQ 221 (472)
T ss_pred CCCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 122346678888888664 455555544
No 108
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.08 E-value=3.2e-05 Score=80.32 Aligned_cols=170 Identities=18% Similarity=0.141 Sum_probs=93.0
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhhcc----ccceEEEEechhhhcccChHHHHHHHHHHHh-------ccccc-----
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQ----FEASSFLANVREVSVTRGLVPLQEQLLSEVL-------MERDL----- 78 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~~~~~----f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-------~~~~~----- 78 (794)
.+.+.|+|+.|+||||+|+.+++.+-.. +...... ....-....+.+..... ...+.
T Consensus 45 ~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~-------~~~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~ 117 (351)
T PRK09112 45 HHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLA-------DPDPASPVWRQIAQGAHPNLLHITRPFDEKTGKF 117 (351)
T ss_pred CeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccC-------CCCCCCHHHHHHHcCCCCCEEEeecccccccccc
Confidence 5679999999999999999999965431 1111000 00001111222211100 00000
Q ss_pred -cccchhhhHHHHHHHh-----cCCeEEEEEcCCCChHH--HHHHhcCCCCCCCCCE-EEEEeCChhhhhhc-CcCcEEE
Q 003802 79 -IIWDVHKGINLIRWRL-----CRKRVLVILDDVDQLEQ--LQALVGNHDWFGFGSR-IIITSRDEHVLKSH-GVTNTYK 148 (794)
Q Consensus 79 -~~~~~~~~~~~l~~~l-----~~~r~LlVlDd~~~~~~--~~~l~~~~~~~~~gs~-IlvTtR~~~v~~~~-~~~~~~~ 148 (794)
..-..++ +..+.+.+ .+++-++|+|+++.... .+.++..+........ |++|++...+.... +....++
T Consensus 118 ~~~I~vd~-iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fiLit~~~~~llptIrSRc~~i~ 196 (351)
T PRK09112 118 KTAITVDE-IRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILISHSSGRLLPTIRSRCQPIS 196 (351)
T ss_pred cccCCHHH-HHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEEEEECChhhccHHHHhhccEEE
Confidence 0001122 22333333 24667999999987643 4555444432233444 45555544443222 2345899
Q ss_pred cCCCChHhHHHHHHhhccCCCCCChhHHHHHHHHHHHhCCCchHHHHH
Q 003802 149 VRGLDYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIEVL 196 (794)
Q Consensus 149 l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 196 (794)
+.+++.++..+++...... .. ...+.+..+++.++|.|..+..+
T Consensus 197 l~pl~~~~~~~~L~~~~~~-~~---~~~~~~~~i~~~s~G~pr~Al~l 240 (351)
T PRK09112 197 LKPLDDDELKKALSHLGSS-QG---SDGEITEALLQRSKGSVRKALLL 240 (351)
T ss_pred ecCCCHHHHHHHHHHhhcc-cC---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 9999999999999874311 11 22355778999999999876544
No 109
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.07 E-value=0.00013 Score=80.79 Aligned_cols=98 Identities=9% Similarity=0.061 Sum_probs=64.2
Q ss_pred CCeEEEEEcCCCChH--HHHHHhcCCCCCCCCCEEEEEe-CChhhhh-hcCcCcEEEcCCCChHhHHHHHHhhccCCCCC
Q 003802 96 RKRVLVILDDVDQLE--QLQALVGNHDWFGFGSRIIITS-RDEHVLK-SHGVTNTYKVRGLDYVEALQLFHLKVSNGKQP 171 (794)
Q Consensus 96 ~~r~LlVlDd~~~~~--~~~~l~~~~~~~~~gs~IlvTt-R~~~v~~-~~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~ 171 (794)
++.-++|||+++... .++.++..+......+++|++| ....+.. .......+++.+++.++..+.+.+.+.....
T Consensus 123 g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi- 201 (618)
T PRK14951 123 GRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENV- 201 (618)
T ss_pred CCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCC-
Confidence 455689999998764 4777776665444566666554 4344332 2334468999999999999999877633221
Q ss_pred ChhHHHHHHHHHHHhCCCchHHHH
Q 003802 172 TDYRVELSKYVVNYAGGLPLAIEV 195 (794)
Q Consensus 172 ~~~~~~~~~~i~~~~~g~Plai~~ 195 (794)
....+....|++.++|.+..+..
T Consensus 202 -~ie~~AL~~La~~s~GslR~al~ 224 (618)
T PRK14951 202 -PAEPQALRLLARAARGSMRDALS 224 (618)
T ss_pred -CCCHHHHHHHHHHcCCCHHHHHH
Confidence 22335678889999987755443
No 110
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.07 E-value=8e-05 Score=81.42 Aligned_cols=96 Identities=15% Similarity=0.093 Sum_probs=59.6
Q ss_pred CeEEEEEcCCCCh--HHHHHHhcCCCCCCCCCEEEEEe-CChhhhhh-cCcCcEEEcCCCChHhHHHHHHhhccCCCCCC
Q 003802 97 KRVLVILDDVDQL--EQLQALVGNHDWFGFGSRIIITS-RDEHVLKS-HGVTNTYKVRGLDYVEALQLFHLKVSNGKQPT 172 (794)
Q Consensus 97 ~r~LlVlDd~~~~--~~~~~l~~~~~~~~~gs~IlvTt-R~~~v~~~-~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~ 172 (794)
++-++|+|+++.. ..+..++..+......+.+|++| ....+... ......+++.+++.++....+.+.+.....
T Consensus 119 ~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi-- 196 (605)
T PRK05896 119 KYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLTIISRCQRYNFKKLNNSELQELLKSIAKKEKI-- 196 (605)
T ss_pred CcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCC--
Confidence 4447999999765 34666665544333455555444 44444322 233457899999999999988886632221
Q ss_pred hhHHHHHHHHHHHhCCCchHHH
Q 003802 173 DYRVELSKYVVNYAGGLPLAIE 194 (794)
Q Consensus 173 ~~~~~~~~~i~~~~~g~Plai~ 194 (794)
....+.+..+++.++|.+..+.
T Consensus 197 ~Is~eal~~La~lS~GdlR~Al 218 (605)
T PRK05896 197 KIEDNAIDKIADLADGSLRDGL 218 (605)
T ss_pred CCCHHHHHHHHHHcCCcHHHHH
Confidence 1223567889999999775433
No 111
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.07 E-value=5.1e-06 Score=81.54 Aligned_cols=93 Identities=18% Similarity=0.108 Sum_probs=57.9
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhh-ccccceEEEEechhhhcccChHHHHHHHHHHHhcccccccc-----chhhhHH
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNTLK-DQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIW-----DVHKGIN 88 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~~~-~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-----~~~~~~~ 88 (794)
-..++|.|++|+|||||++++++... .+|+..+|+....+ +..++.++++++...+......... -.....+
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~e--r~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~ 93 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDE--RPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLE 93 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccC--CCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHH
Confidence 35788999999999999999999654 36898989874322 2257777888773332222111110 0111112
Q ss_pred HHHHH-hcCCeEEEEEcCCCCh
Q 003802 89 LIRWR-LCRKRVLVILDDVDQL 109 (794)
Q Consensus 89 ~l~~~-l~~~r~LlVlDd~~~~ 109 (794)
..... -.+++.++++|++...
T Consensus 94 ~a~~~~~~G~~vll~iDei~r~ 115 (249)
T cd01128 94 KAKRLVEHGKDVVILLDSITRL 115 (249)
T ss_pred HHHHHHHCCCCEEEEEECHHHh
Confidence 22211 2479999999998654
No 112
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.06 E-value=1.1e-07 Score=101.23 Aligned_cols=110 Identities=22% Similarity=0.195 Sum_probs=80.8
Q ss_pred CCCCCCCCEEecCCCCCccCCCCccccCCCCCCeEeCCCCCCccCchhh-hccCCCCEEecCCCcCCCCCCCCCcccccc
Q 003802 584 FTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLPSSI-NQLLKLKILCLEKCRNLKSLPELPPEIVFV 662 (794)
Q Consensus 584 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l-~~l~~L~~L~L~~n~~~~~~~~~~~~L~~L 662 (794)
+.-++.|+.|+|++|++ + -...+..|+.|++|||++|.+..+|..- ..+ +|+.|+|++|...+ +-
T Consensus 183 Lqll~ale~LnLshNk~-~--~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN~l~t-L~--------- 248 (1096)
T KOG1859|consen 183 LQLLPALESLNLSHNKF-T--KVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNNALTT-LR--------- 248 (1096)
T ss_pred HHHHHHhhhhccchhhh-h--hhHHHHhcccccccccccchhccccccchhhh-hheeeeecccHHHh-hh---------
Confidence 55567889999999984 3 2336788899999999999988887432 333 49999999887432 21
Q ss_pred ccccccccccccccccccCCCCceEEEeCCCCchhhhhhhhhHHH
Q 003802 663 GAEDCTSLETISAFAKLSRSPNIALNFLNCFKLVEDQVSKDNLAV 707 (794)
Q Consensus 663 ~l~~~~~L~~l~~~~n~~~~~~~~~~~~~~~~L~~L~l~~N~l~~ 707 (794)
.+.++.+|..|+++.|....-.....+..+..|+.|.|.+|++..
T Consensus 249 gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 249 GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence 467788899999998843333333456788899999999999864
No 113
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.06 E-value=4e-05 Score=83.66 Aligned_cols=158 Identities=13% Similarity=0.171 Sum_probs=92.3
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhhccccc--eEEEEechhhhcccChHHHHHHHHHHHhccccccccchhhhHHHHHH
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEA--SSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRW 92 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~ 92 (794)
...+.|+|+.|+|||+|++.+++.+.+.++. ++|+.. .+...++...+... ....+.+
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~----------~~~~~~~~~~~~~~----------~~~~~~~ 207 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTS----------EKFTNDFVNALRNN----------TMEEFKE 207 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEH----------HHHHHHHHHHHHcC----------cHHHHHH
Confidence 3568899999999999999999987766533 445541 11222233222110 1223333
Q ss_pred HhcCCeEEEEEcCCCChH----HHHHHhcCCCC-CCCCCEEEEEeCChh---------hhhhcCcCcEEEcCCCChHhHH
Q 003802 93 RLCRKRVLVILDDVDQLE----QLQALVGNHDW-FGFGSRIIITSRDEH---------VLKSHGVTNTYKVRGLDYVEAL 158 (794)
Q Consensus 93 ~l~~~r~LlVlDd~~~~~----~~~~l~~~~~~-~~~gs~IlvTtR~~~---------v~~~~~~~~~~~l~~L~~~ea~ 158 (794)
.++ +.-+|||||++... ..+.+...+.. ...|..|++|+.... +...+.....+++++.+.++-.
T Consensus 208 ~~~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~ 286 (450)
T PRK00149 208 KYR-SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRI 286 (450)
T ss_pred HHh-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHH
Confidence 343 34488999995431 11222221100 023455777776431 1222333457899999999999
Q ss_pred HHHHhhccCCCCCChhHHHHHHHHHHHhCCCchHHHH
Q 003802 159 QLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIEV 195 (794)
Q Consensus 159 ~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 195 (794)
+++++.+... .....+++...|++.+.|....+.-
T Consensus 287 ~il~~~~~~~--~~~l~~e~l~~ia~~~~~~~R~l~~ 321 (450)
T PRK00149 287 AILKKKAEEE--GIDLPDEVLEFIAKNITSNVRELEG 321 (450)
T ss_pred HHHHHHHHHc--CCCCCHHHHHHHHcCcCCCHHHHHH
Confidence 9999987432 1223446788888888887765443
No 114
>PRK06620 hypothetical protein; Validated
Probab=98.04 E-value=5.8e-05 Score=72.79 Aligned_cols=133 Identities=16% Similarity=0.078 Sum_probs=78.4
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhhccccceEEEEechhhhcccChHHHHHHHHHHHhccccccccchhhhHHHHHHHhc
Q 003802 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWRLC 95 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~ 95 (794)
+.+.|+|++|+|||+|++.+++.... .++.. .... . +..
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~-----~~~~~------~~~~----~-------------------------~~~- 83 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNA-----YIIKD------IFFN----E-------------------------EIL- 83 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCC-----EEcch------hhhc----h-------------------------hHH-
Confidence 56899999999999999987775421 22210 0000 0 001
Q ss_pred CCeEEEEEcCCCChHH--HHHHhcCCCCCCCCCEEEEEeCChh-------hhhhcCcCcEEEcCCCChHhHHHHHHhhcc
Q 003802 96 RKRVLVILDDVDQLEQ--LQALVGNHDWFGFGSRIIITSRDEH-------VLKSHGVTNTYKVRGLDYVEALQLFHLKVS 166 (794)
Q Consensus 96 ~~r~LlVlDd~~~~~~--~~~l~~~~~~~~~gs~IlvTtR~~~-------v~~~~~~~~~~~l~~L~~~ea~~lf~~~~~ 166 (794)
+..-++++||++...+ +-.+.-... ..|..||+|++... ....+.....++++++++++...++.+.+.
T Consensus 84 ~~~d~lliDdi~~~~~~~lf~l~N~~~--e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~ 161 (214)
T PRK06620 84 EKYNAFIIEDIENWQEPALLHIFNIIN--EKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFS 161 (214)
T ss_pred hcCCEEEEeccccchHHHHHHHHHHHH--hcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHH
Confidence 1234788999975432 112211111 34678999988532 122233445799999999998888887763
Q ss_pred CCCCCChhHHHHHHHHHHHhCCCchHH
Q 003802 167 NGKQPTDYRVELSKYVVNYAGGLPLAI 193 (794)
Q Consensus 167 ~~~~~~~~~~~~~~~i~~~~~g~Plai 193 (794)
.. .-...+++.+-|++.+.|.-..+
T Consensus 162 ~~--~l~l~~ev~~~L~~~~~~d~r~l 186 (214)
T PRK06620 162 IS--SVTISRQIIDFLLVNLPREYSKI 186 (214)
T ss_pred Hc--CCCCCHHHHHHHHHHccCCHHHH
Confidence 21 11233466777777776654443
No 115
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.04 E-value=0.00011 Score=75.60 Aligned_cols=95 Identities=16% Similarity=0.182 Sum_probs=61.1
Q ss_pred CCeEEEEEcCCCChH--HHHHHhcCCCCCCCCCEEEEEeCCh-hhhhh-cCcCcEEEcCCCChHhHHHHHHhhccCCCCC
Q 003802 96 RKRVLVILDDVDQLE--QLQALVGNHDWFGFGSRIIITSRDE-HVLKS-HGVTNTYKVRGLDYVEALQLFHLKVSNGKQP 171 (794)
Q Consensus 96 ~~r~LlVlDd~~~~~--~~~~l~~~~~~~~~gs~IlvTtR~~-~v~~~-~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~ 171 (794)
+++-++|+|+++.+. ....++..+.....++.+|+||.+. .+... .+....+++.+++.+++.+.+.+... . .
T Consensus 105 ~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~~-~-~- 181 (328)
T PRK05707 105 GGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQALP-E-S- 181 (328)
T ss_pred CCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhcc-c-C-
Confidence 344556789998764 3666665554334567777766664 33322 33345789999999999999987541 1 1
Q ss_pred ChhHHHHHHHHHHHhCCCchHHHHH
Q 003802 172 TDYRVELSKYVVNYAGGLPLAIEVL 196 (794)
Q Consensus 172 ~~~~~~~~~~i~~~~~g~Plai~~~ 196 (794)
..+.+..++..++|.|..+..+
T Consensus 182 ---~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 182 ---DERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred ---ChHHHHHHHHHcCCCHHHHHHH
Confidence 1234567788999999765543
No 116
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.03 E-value=3e-05 Score=82.89 Aligned_cols=98 Identities=10% Similarity=0.068 Sum_probs=63.7
Q ss_pred CCeEEEEEcCCCChH--HHHHHhcCCCCCCCCCEEEEEe-CChhhhhhc-CcCcEEEcCCCChHhHHHHHHhhccCCCCC
Q 003802 96 RKRVLVILDDVDQLE--QLQALVGNHDWFGFGSRIIITS-RDEHVLKSH-GVTNTYKVRGLDYVEALQLFHLKVSNGKQP 171 (794)
Q Consensus 96 ~~r~LlVlDd~~~~~--~~~~l~~~~~~~~~gs~IlvTt-R~~~v~~~~-~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~ 171 (794)
+++-++|+|+++... .++.+...+....+.+.+|++| +...+.... .....+++.++++++..+.+...+....
T Consensus 126 ~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g-- 203 (397)
T PRK14955 126 GRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEG-- 203 (397)
T ss_pred CCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcC--
Confidence 456688999997653 5777776665445566665554 444443322 2234788999999999988887763221
Q ss_pred ChhHHHHHHHHHHHhCCCchHHHH
Q 003802 172 TDYRVELSKYVVNYAGGLPLAIEV 195 (794)
Q Consensus 172 ~~~~~~~~~~i~~~~~g~Plai~~ 195 (794)
....++.++.|++.++|.+.-+..
T Consensus 204 ~~i~~~al~~l~~~s~g~lr~a~~ 227 (397)
T PRK14955 204 ISVDADALQLIGRKAQGSMRDAQS 227 (397)
T ss_pred CCCCHHHHHHHHHHcCCCHHHHHH
Confidence 123346788899999998754443
No 117
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.03 E-value=0.00017 Score=75.17 Aligned_cols=141 Identities=22% Similarity=0.204 Sum_probs=89.8
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhhccccc--eEEEEechhhhcccChHHHHHHHHHHHhccccccccchhhhHHHHHHHh
Q 003802 17 FIGICGMGGIGKTTLAKVLYNTLKDQFEA--SSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWRL 94 (794)
Q Consensus 17 vi~i~G~~GvGKTtLa~~v~~~~~~~f~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l 94 (794)
-+.|+|..|+|||+.++.+++++++.... ++++. +.......++...++.++...... .....+....+.+.+
T Consensus 44 n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yIN----c~~~~t~~~i~~~i~~~~~~~p~~-g~~~~~~~~~l~~~~ 118 (366)
T COG1474 44 NIIIYGPTGTGKTATVKFVMEELEESSANVEVVYIN----CLELRTPYQVLSKILNKLGKVPLT-GDSSLEILKRLYDNL 118 (366)
T ss_pred cEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEe----eeeCCCHHHHHHHHHHHcCCCCCC-CCchHHHHHHHHHHH
Confidence 38899999999999999999987766433 57777 444566777888888876522221 233344455555555
Q ss_pred c--CCeEEEEEcCCCChHH-----HHHHhcCCCCCCCCCEE--EEEeCChhhhh--------hcCcCcEEEcCCCChHhH
Q 003802 95 C--RKRVLVILDDVDQLEQ-----LQALVGNHDWFGFGSRI--IITSRDEHVLK--------SHGVTNTYKVRGLDYVEA 157 (794)
Q Consensus 95 ~--~~r~LlVlDd~~~~~~-----~~~l~~~~~~~~~gs~I--lvTtR~~~v~~--------~~~~~~~~~l~~L~~~ea 157 (794)
. ++..++|+|+++.... +-.+....... .++| |..+-+-.... ..+.. .+...|-+.+|-
T Consensus 119 ~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~--~~~v~vi~i~n~~~~~~~ld~rv~s~l~~~-~I~F~pY~a~el 195 (366)
T COG1474 119 SKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGEN--KVKVSIIAVSNDDKFLDYLDPRVKSSLGPS-EIVFPPYTAEEL 195 (366)
T ss_pred HhcCCeEEEEEcchhhhccccchHHHHHHhhcccc--ceeEEEEEEeccHHHHHHhhhhhhhccCcc-eeeeCCCCHHHH
Confidence 4 5789999999966543 22332222211 3433 33443332222 22223 478899999999
Q ss_pred HHHHHhhc
Q 003802 158 LQLFHLKV 165 (794)
Q Consensus 158 ~~lf~~~~ 165 (794)
.+++..++
T Consensus 196 ~~Il~~R~ 203 (366)
T COG1474 196 YDILRERV 203 (366)
T ss_pred HHHHHHHH
Confidence 99999887
No 118
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.02 E-value=7.4e-05 Score=79.20 Aligned_cols=149 Identities=17% Similarity=0.182 Sum_probs=81.6
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEEechhhhcccChHHHHHHHHHHHhccccccccchhhhHHHHHHHh
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWRL 94 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l 94 (794)
.+-|.|+|++|+|||++|+.+++.....|-.+ . ..++....... .......+.+..
T Consensus 156 p~gvLL~GppGtGKT~lakaia~~l~~~~~~v---~----------~~~l~~~~~g~-----------~~~~i~~~f~~a 211 (364)
T TIGR01242 156 PKGVLLYGPPGTGKTLLAKAVAHETNATFIRV---V----------GSELVRKYIGE-----------GARLVREIFELA 211 (364)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhCCCCEEec---c----------hHHHHHHhhhH-----------HHHHHHHHHHHH
Confidence 45689999999999999999999776543211 0 00111111110 011112222222
Q ss_pred -cCCeEEEEEcCCCChH----------------HHHHHhcCCC--CCCCCCEEEEEeCChhhh-hhc----CcCcEEEcC
Q 003802 95 -CRKRVLVILDDVDQLE----------------QLQALVGNHD--WFGFGSRIIITSRDEHVL-KSH----GVTNTYKVR 150 (794)
Q Consensus 95 -~~~r~LlVlDd~~~~~----------------~~~~l~~~~~--~~~~gs~IlvTtR~~~v~-~~~----~~~~~~~l~ 150 (794)
...+.+|++|+++... .+..+...+. ....+.+||.||...... ..+ .....+++.
T Consensus 212 ~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~ 291 (364)
T TIGR01242 212 KEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVP 291 (364)
T ss_pred HhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhCChhhcCcccCceEEEeC
Confidence 2467899999986541 1223332221 112356777777753221 111 224578899
Q ss_pred CCChHhHHHHHHhhccCCCCCChhHHHHHHHHHHHhCCCc
Q 003802 151 GLDYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLP 190 (794)
Q Consensus 151 ~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 190 (794)
..+.++..++|...+........ .....+++.+.|..
T Consensus 292 ~P~~~~r~~Il~~~~~~~~l~~~---~~~~~la~~t~g~s 328 (364)
T TIGR01242 292 LPDFEGRLEILKIHTRKMKLAED---VDLEAIAKMTEGAS 328 (364)
T ss_pred CcCHHHHHHHHHHHHhcCCCCcc---CCHHHHHHHcCCCC
Confidence 99999999999887633221111 11355667776654
No 119
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.98 E-value=9e-05 Score=78.92 Aligned_cols=167 Identities=14% Similarity=0.191 Sum_probs=91.0
Q ss_pred hhHhHhcCCCCeEEEEEEccCCCcHHHHHHHHHHHhhc--------cccceEEEEechhhhcccChHHHHHHHHHHHhcc
Q 003802 4 MNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKD--------QFEASSFLANVREVSVTRGLVPLQEQLLSEVLME 75 (794)
Q Consensus 4 l~~~l~~~~~~~~vi~i~G~~GvGKTtLa~~v~~~~~~--------~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 75 (794)
+.+.+..+ .-.+.+.++|+.|+|||++|+.+++.+.. .|...+.-. . ......+ +...++..++..
T Consensus 29 l~~~i~~~-~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l--~-~~~~~~~-~~i~~l~~~~~~- 102 (367)
T PRK14970 29 LLNAIENN-HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFEL--D-AASNNSV-DDIRNLIDQVRI- 102 (367)
T ss_pred HHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEe--c-cccCCCH-HHHHHHHHHHhh-
Confidence 44444433 23568889999999999999999886533 122111110 0 0000111 111122221100
Q ss_pred ccccccchhhhHHHHHHHhcCCeEEEEEcCCCChH--HHHHHhcCCCCCCCCCEEEEEe-CChhhhhh-cCcCcEEEcCC
Q 003802 76 RDLIIWDVHKGINLIRWRLCRKRVLVILDDVDQLE--QLQALVGNHDWFGFGSRIIITS-RDEHVLKS-HGVTNTYKVRG 151 (794)
Q Consensus 76 ~~~~~~~~~~~~~~l~~~l~~~r~LlVlDd~~~~~--~~~~l~~~~~~~~~gs~IlvTt-R~~~v~~~-~~~~~~~~l~~ 151 (794)
.-..+++-++|+|+++... .++.+...+......+.+|+++ +...+... ......++..+
T Consensus 103 ----------------~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~sr~~~v~~~~ 166 (367)
T PRK14970 103 ----------------PPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRCQIFDFKR 166 (367)
T ss_pred ----------------ccccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHHhcceeEecCC
Confidence 0012455689999987553 3666655443323445555555 33333222 22344789999
Q ss_pred CChHhHHHHHHhhccCCCCCChhHHHHHHHHHHHhCCCchHHH
Q 003802 152 LDYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIE 194 (794)
Q Consensus 152 L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~ 194 (794)
+++++....+.+.+..... ...++.+..+++.++|.+..+.
T Consensus 167 ~~~~~l~~~l~~~~~~~g~--~i~~~al~~l~~~~~gdlr~~~ 207 (367)
T PRK14970 167 ITIKDIKEHLAGIAVKEGI--KFEDDALHIIAQKADGALRDAL 207 (367)
T ss_pred ccHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHhCCCCHHHHH
Confidence 9999999888876632221 1234677888888988765443
No 120
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.98 E-value=5.4e-05 Score=76.15 Aligned_cols=133 Identities=17% Similarity=0.197 Sum_probs=70.2
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHHHHhhcc--ccceEEEEechhhhcccChHHHHHHHHHHHhccccccccchhhhHHHH
Q 003802 13 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQ--FEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLI 90 (794)
Q Consensus 13 ~~~~vi~i~G~~GvGKTtLa~~v~~~~~~~--f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l 90 (794)
+....+.++|++|+||||+|+.+++.+... .....++. +.. .+ +.....+. ........+
T Consensus 40 ~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~----~~~----~~----l~~~~~g~------~~~~~~~~~ 101 (261)
T TIGR02881 40 KQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIE----VER----AD----LVGEYIGH------TAQKTREVI 101 (261)
T ss_pred CCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEE----ecH----HH----hhhhhccc------hHHHHHHHH
Confidence 345678899999999999999999864321 11122222 110 01 11110000 001111112
Q ss_pred HHHhcCCeEEEEEcCCCCh----------HHHHHHhcCCCCCCCCCEEEEEeCChhhhh------hc-C-cCcEEEcCCC
Q 003802 91 RWRLCRKRVLVILDDVDQL----------EQLQALVGNHDWFGFGSRIIITSRDEHVLK------SH-G-VTNTYKVRGL 152 (794)
Q Consensus 91 ~~~l~~~r~LlVlDd~~~~----------~~~~~l~~~~~~~~~gs~IlvTtR~~~v~~------~~-~-~~~~~~l~~L 152 (794)
.+ . ..-+|++|+++.. +..+.+............+++++....... .+ . ....++++++
T Consensus 102 ~~-a--~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~ 178 (261)
T TIGR02881 102 KK-A--LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDY 178 (261)
T ss_pred Hh-c--cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHHHhccceEEEECCC
Confidence 21 1 2348899999652 234555554433333345556655433211 11 1 1246889999
Q ss_pred ChHhHHHHHHhhcc
Q 003802 153 DYVEALQLFHLKVS 166 (794)
Q Consensus 153 ~~~ea~~lf~~~~~ 166 (794)
+.++..+++.+.+.
T Consensus 179 ~~~el~~Il~~~~~ 192 (261)
T TIGR02881 179 TVEELMEIAERMVK 192 (261)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999987763
No 121
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.98 E-value=9.5e-05 Score=81.50 Aligned_cols=97 Identities=8% Similarity=0.096 Sum_probs=61.4
Q ss_pred CCeEEEEEcCCCChHH--HHHHhcCCCCCCCCCEEEEEe-CChhhhhh-cCcCcEEEcCCCChHhHHHHHHhhccCCCCC
Q 003802 96 RKRVLVILDDVDQLEQ--LQALVGNHDWFGFGSRIIITS-RDEHVLKS-HGVTNTYKVRGLDYVEALQLFHLKVSNGKQP 171 (794)
Q Consensus 96 ~~r~LlVlDd~~~~~~--~~~l~~~~~~~~~gs~IlvTt-R~~~v~~~-~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~ 171 (794)
+++-++|+|+++.... .+.++..+......+.+|++| ..+.+... ......+++.+++.++..+.+.+.+....
T Consensus 118 ~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~eg-- 195 (527)
T PRK14969 118 GRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQEN-- 195 (527)
T ss_pred CCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcC--
Confidence 5677999999987643 666666554334456555555 43333221 22234789999999999988887663222
Q ss_pred ChhHHHHHHHHHHHhCCCchHHH
Q 003802 172 TDYRVELSKYVVNYAGGLPLAIE 194 (794)
Q Consensus 172 ~~~~~~~~~~i~~~~~g~Plai~ 194 (794)
-...++....|++.++|.+.-+.
T Consensus 196 i~~~~~al~~la~~s~Gslr~al 218 (527)
T PRK14969 196 IPFDATALQLLARAAAGSMRDAL 218 (527)
T ss_pred CCCCHHHHHHHHHHcCCCHHHHH
Confidence 12233566788999999875443
No 122
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.97 E-value=1.5e-05 Score=81.58 Aligned_cols=93 Identities=18% Similarity=0.134 Sum_probs=58.4
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhh-ccccceEEEEechhhhcccChHHHHHHHHHHHhccccccccch-----hhhHHH
Q 003802 16 RFIGICGMGGIGKTTLAKVLYNTLK-DQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDV-----HKGINL 89 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~~~~-~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-----~~~~~~ 89 (794)
.-.+|+|++|+||||||+++|+.+. .+|+..+|+....+ ....+.++++++...+.....+..... ....+.
T Consensus 170 QR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgE--R~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~ 247 (416)
T PRK09376 170 QRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDE--RPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEK 247 (416)
T ss_pred ceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCC--chhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHH
Confidence 4567999999999999999999654 37999999985443 223666777777643322222111111 111111
Q ss_pred HHHH-hcCCeEEEEEcCCCChH
Q 003802 90 IRWR-LCRKRVLVILDDVDQLE 110 (794)
Q Consensus 90 l~~~-l~~~r~LlVlDd~~~~~ 110 (794)
-+.. ..+++.+|++|++....
T Consensus 248 Ae~~~e~G~dVlL~iDsItR~a 269 (416)
T PRK09376 248 AKRLVEHGKDVVILLDSITRLA 269 (416)
T ss_pred HHHHHHcCCCEEEEEEChHHHH
Confidence 1111 25799999999986553
No 123
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.96 E-value=0.00015 Score=71.57 Aligned_cols=188 Identities=13% Similarity=0.038 Sum_probs=110.9
Q ss_pred hhhhHhHhcC-CCCeEEEEEEccCCCcHHHHHHHHHHHhhcccc------ceEEEEechhhhcccChHHHHHHHHHHHhc
Q 003802 2 EKMNGYLEAG-LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFE------ASSFLANVREVSVTRGLVPLQEQLLSEVLM 74 (794)
Q Consensus 2 ~~l~~~l~~~-~~~~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 74 (794)
+++.+++... ....+-+.|+|.+|+|||++++++.......++ .++.+. +...++...+...|+..++.
T Consensus 47 ~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq----~P~~p~~~~~Y~~IL~~lga 122 (302)
T PF05621_consen 47 DRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQ----MPPEPDERRFYSAILEALGA 122 (302)
T ss_pred HHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEe----cCCCCChHHHHHHHHHHhCc
Confidence 5667777653 445788999999999999999999986544432 234444 66778899999999999776
Q ss_pred cccccccchhhhHHHHHHHhcC-CeEEEEEcCCCChH-----HHHHH---hcCCCCCCCCCEEEEEeCChhhhhh-----
Q 003802 75 ERDLIIWDVHKGINLIRWRLCR-KRVLVILDDVDQLE-----QLQAL---VGNHDWFGFGSRIIITSRDEHVLKS----- 140 (794)
Q Consensus 75 ~~~~~~~~~~~~~~~l~~~l~~-~r~LlVlDd~~~~~-----~~~~l---~~~~~~~~~gs~IlvTtR~~~v~~~----- 140 (794)
..... ........++.+.++. +--+||+|++.+.- .-.++ +..+...-.-+-|.+-|+..--+-.
T Consensus 123 P~~~~-~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~QL 201 (302)
T PF05621_consen 123 PYRPR-DRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDPQL 201 (302)
T ss_pred ccCCC-CCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCHHH
Confidence 65433 2333444444455543 45689999996641 11111 1222222234566777765322211
Q ss_pred cCcCcEEEcCCCCh-HhHHHHHHhhc--cC-CCCCChhHHHHHHHHHHHhCCCchHHH
Q 003802 141 HGVTNTYKVRGLDY-VEALQLFHLKV--SN-GKQPTDYRVELSKYVVNYAGGLPLAIE 194 (794)
Q Consensus 141 ~~~~~~~~l~~L~~-~ea~~lf~~~~--~~-~~~~~~~~~~~~~~i~~~~~g~Plai~ 194 (794)
......+.++..+. ++...|+.... .. ...+.-..++.+..|...++|..=-+.
T Consensus 202 a~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~ 259 (302)
T PF05621_consen 202 ASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELS 259 (302)
T ss_pred HhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHH
Confidence 11223455655443 44555554332 11 122223456789999999999874443
No 124
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.96 E-value=0.00024 Score=79.05 Aligned_cols=95 Identities=11% Similarity=0.108 Sum_probs=60.9
Q ss_pred CCeEEEEEcCCCChH--HHHHHhcCCCCCCCCCEEEE-EeCChhhhhh-cCcCcEEEcCCCChHhHHHHHHhhccCCCCC
Q 003802 96 RKRVLVILDDVDQLE--QLQALVGNHDWFGFGSRIII-TSRDEHVLKS-HGVTNTYKVRGLDYVEALQLFHLKVSNGKQP 171 (794)
Q Consensus 96 ~~r~LlVlDd~~~~~--~~~~l~~~~~~~~~gs~Ilv-TtR~~~v~~~-~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~ 171 (794)
+++-++|+|+++... ..+.++..+......+.+|+ |++...+... ......+++.+++.++....+.+.+....
T Consensus 126 ~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~eg-- 203 (620)
T PRK14954 126 GRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEG-- 203 (620)
T ss_pred CCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcC--
Confidence 456688999997764 36666666553344555554 4444444332 33456899999999999888877653221
Q ss_pred ChhHHHHHHHHHHHhCCCchH
Q 003802 172 TDYRVELSKYVVNYAGGLPLA 192 (794)
Q Consensus 172 ~~~~~~~~~~i~~~~~g~Pla 192 (794)
.....+.++.|++.++|..--
T Consensus 204 i~I~~eal~~La~~s~Gdlr~ 224 (620)
T PRK14954 204 IQIDADALQLIARKAQGSMRD 224 (620)
T ss_pred CCCCHHHHHHHHHHhCCCHHH
Confidence 112346678899999996643
No 125
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.95 E-value=0.00012 Score=81.72 Aligned_cols=98 Identities=14% Similarity=0.146 Sum_probs=62.6
Q ss_pred CCeEEEEEcCCCChH--HHHHHhcCCCCCCCCCEEE-EEeCChhhhhh-cCcCcEEEcCCCChHhHHHHHHhhccCCCCC
Q 003802 96 RKRVLVILDDVDQLE--QLQALVGNHDWFGFGSRII-ITSRDEHVLKS-HGVTNTYKVRGLDYVEALQLFHLKVSNGKQP 171 (794)
Q Consensus 96 ~~r~LlVlDd~~~~~--~~~~l~~~~~~~~~gs~Il-vTtR~~~v~~~-~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~ 171 (794)
+++-++|+|+++... .+.+++..+......+.+| +|++...+... ......+++.+++.++..+.+...+....
T Consensus 117 g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~keg-- 194 (725)
T PRK07133 117 SKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLTILSRVQRFNFRRISEDEIVSRLEFILEKEN-- 194 (725)
T ss_pred CCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcC--
Confidence 566799999997653 4666766554334455444 55555554432 33345899999999999988887652221
Q ss_pred ChhHHHHHHHHHHHhCCCchHHHH
Q 003802 172 TDYRVELSKYVVNYAGGLPLAIEV 195 (794)
Q Consensus 172 ~~~~~~~~~~i~~~~~g~Plai~~ 195 (794)
-....+.+..|++.++|.+.-+..
T Consensus 195 I~id~eAl~~LA~lS~GslR~Als 218 (725)
T PRK07133 195 ISYEKNALKLIAKLSSGSLRDALS 218 (725)
T ss_pred CCCCHHHHHHHHHHcCCCHHHHHH
Confidence 112235677899999997754433
No 126
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.94 E-value=0.00027 Score=76.90 Aligned_cols=100 Identities=11% Similarity=0.074 Sum_probs=62.8
Q ss_pred CCeEEEEEcCCCChH--HHHHHhcCCCCCCCCCEEEEEe-CChhhhhh-cCcCcEEEcCCCChHhHHHHHHhhccCCCCC
Q 003802 96 RKRVLVILDDVDQLE--QLQALVGNHDWFGFGSRIIITS-RDEHVLKS-HGVTNTYKVRGLDYVEALQLFHLKVSNGKQP 171 (794)
Q Consensus 96 ~~r~LlVlDd~~~~~--~~~~l~~~~~~~~~gs~IlvTt-R~~~v~~~-~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~ 171 (794)
+++-++|+|+++... ..+.++..+....+...+|++| +...+... ......+++.+++.++....+.+.+-...
T Consensus 118 ~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~eg-- 195 (486)
T PRK14953 118 GKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEK-- 195 (486)
T ss_pred CCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcC--
Confidence 567799999997653 4566665554334455555544 43333322 22345789999999999998888663221
Q ss_pred ChhHHHHHHHHHHHhCCCchHHHHHh
Q 003802 172 TDYRVELSKYVVNYAGGLPLAIEVLG 197 (794)
Q Consensus 172 ~~~~~~~~~~i~~~~~g~Plai~~~a 197 (794)
-....+.+..|++.++|.+..+....
T Consensus 196 i~id~~al~~La~~s~G~lr~al~~L 221 (486)
T PRK14953 196 IEYEEKALDLLAQASEGGMRDAASLL 221 (486)
T ss_pred CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 12233567788899999876554443
No 127
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.93 E-value=0.00038 Score=76.93 Aligned_cols=95 Identities=19% Similarity=0.147 Sum_probs=61.0
Q ss_pred CCeEEEEEcCCCChH--HHHHHhcCCCCCCCCCEEEE-EeCChhhhhh-cCcCcEEEcCCCChHhHHHHHHhhccCCCCC
Q 003802 96 RKRVLVILDDVDQLE--QLQALVGNHDWFGFGSRIII-TSRDEHVLKS-HGVTNTYKVRGLDYVEALQLFHLKVSNGKQP 171 (794)
Q Consensus 96 ~~r~LlVlDd~~~~~--~~~~l~~~~~~~~~gs~Ilv-TtR~~~v~~~-~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~ 171 (794)
+++-++|+|+++... ..+.++..+........+|+ ||....+... ......+++.+++.++..+++.+.+.....
T Consensus 117 ~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi- 195 (584)
T PRK14952 117 SRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGV- 195 (584)
T ss_pred CCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCC-
Confidence 456689999997653 46666665554444555554 5444444432 333458999999999999888876632221
Q ss_pred ChhHHHHHHHHHHHhCCCchH
Q 003802 172 TDYRVELSKYVVNYAGGLPLA 192 (794)
Q Consensus 172 ~~~~~~~~~~i~~~~~g~Pla 192 (794)
....+....|++..+|.+..
T Consensus 196 -~i~~~al~~Ia~~s~GdlR~ 215 (584)
T PRK14952 196 -VVDDAVYPLVIRAGGGSPRD 215 (584)
T ss_pred -CCCHHHHHHHHHHcCCCHHH
Confidence 12235667788899997753
No 128
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.93 E-value=0.00026 Score=81.48 Aligned_cols=98 Identities=12% Similarity=0.087 Sum_probs=62.2
Q ss_pred cCCeEEEEEcCCCChH--HHHHHhcCCCCCCCCCEEEEEe-CChhhhhh-cCcCcEEEcCCCChHhHHHHHHhhccCCCC
Q 003802 95 CRKRVLVILDDVDQLE--QLQALVGNHDWFGFGSRIIITS-RDEHVLKS-HGVTNTYKVRGLDYVEALQLFHLKVSNGKQ 170 (794)
Q Consensus 95 ~~~r~LlVlDd~~~~~--~~~~l~~~~~~~~~gs~IlvTt-R~~~v~~~-~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~ 170 (794)
.+++-++|||+++.+. ..+.|+..+......+.+|++| ....+... ......|++..++.++..+++.+.+....
T Consensus 118 ~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EG- 196 (824)
T PRK07764 118 ESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEG- 196 (824)
T ss_pred cCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcC-
Confidence 3566688999998764 3666666555444566655554 44444432 23345889999999999988887652222
Q ss_pred CChhHHHHHHHHHHHhCCCchHHH
Q 003802 171 PTDYRVELSKYVVNYAGGLPLAIE 194 (794)
Q Consensus 171 ~~~~~~~~~~~i~~~~~g~Plai~ 194 (794)
.....+....|++.++|.+..+.
T Consensus 197 -v~id~eal~lLa~~sgGdlR~Al 219 (824)
T PRK07764 197 -VPVEPGVLPLVIRAGGGSVRDSL 219 (824)
T ss_pred -CCCCHHHHHHHHHHcCCCHHHHH
Confidence 11233556788899999874443
No 129
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.92 E-value=0.00084 Score=73.10 Aligned_cols=99 Identities=13% Similarity=0.152 Sum_probs=64.3
Q ss_pred CCeEEEEEcCCCChH--HHHHHhcCCCCCCCCCEEEEEeCCh-hhhh-hcCcCcEEEcCCCChHhHHHHHHhhccCCCCC
Q 003802 96 RKRVLVILDDVDQLE--QLQALVGNHDWFGFGSRIIITSRDE-HVLK-SHGVTNTYKVRGLDYVEALQLFHLKVSNGKQP 171 (794)
Q Consensus 96 ~~r~LlVlDd~~~~~--~~~~l~~~~~~~~~gs~IlvTtR~~-~v~~-~~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~ 171 (794)
+++-++|+|+++... ..++++..+....+.+++|++|.+. .+.. .......+++.+++.++..+.+.+.+.....
T Consensus 116 ~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi- 194 (535)
T PRK08451 116 ARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGV- 194 (535)
T ss_pred CCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCC-
Confidence 456688999997664 3566665554444566666666543 2222 1223458899999999999998876632221
Q ss_pred ChhHHHHHHHHHHHhCCCchHHHHH
Q 003802 172 TDYRVELSKYVVNYAGGLPLAIEVL 196 (794)
Q Consensus 172 ~~~~~~~~~~i~~~~~g~Plai~~~ 196 (794)
...++.+..|++.++|.+.-+...
T Consensus 195 -~i~~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 195 -SYEPEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred -CCCHHHHHHHHHHcCCcHHHHHHH
Confidence 223467788999999988655544
No 130
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.91 E-value=0.0003 Score=77.45 Aligned_cols=102 Identities=13% Similarity=0.175 Sum_probs=64.5
Q ss_pred CCeEEEEEcCCCCh--HHHHHHhcCCCCCCCCCEEEEEeCC-hhhhhh-cCcCcEEEcCCCChHhHHHHHHhhccCCCCC
Q 003802 96 RKRVLVILDDVDQL--EQLQALVGNHDWFGFGSRIIITSRD-EHVLKS-HGVTNTYKVRGLDYVEALQLFHLKVSNGKQP 171 (794)
Q Consensus 96 ~~r~LlVlDd~~~~--~~~~~l~~~~~~~~~gs~IlvTtR~-~~v~~~-~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~ 171 (794)
+++-++|||+++.. ...+.++..+........+|++|.. ..+... ......+++.++++++....+.+.+....
T Consensus 118 g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~eg-- 195 (624)
T PRK14959 118 GRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREG-- 195 (624)
T ss_pred CCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcC--
Confidence 56679999999766 3466666655433345555555544 444322 22345789999999999999987663222
Q ss_pred ChhHHHHHHHHHHHhCCCc-hHHHHHhhh
Q 003802 172 TDYRVELSKYVVNYAGGLP-LAIEVLGSF 199 (794)
Q Consensus 172 ~~~~~~~~~~i~~~~~g~P-lai~~~a~~ 199 (794)
.....+.++.|++.++|.+ .|+..+..+
T Consensus 196 i~id~eal~lIA~~s~GdlR~Al~lLeql 224 (624)
T PRK14959 196 VDYDPAAVRLIARRAAGSVRDSMSLLGQV 224 (624)
T ss_pred CCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 1233466788899999865 555555443
No 131
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.90 E-value=0.0002 Score=79.62 Aligned_cols=99 Identities=13% Similarity=0.076 Sum_probs=64.2
Q ss_pred CCeEEEEEcCCCChH--HHHHHhcCCCCCCCCCEEEEEe-CChhhhhh-cCcCcEEEcCCCChHhHHHHHHhhccCCCCC
Q 003802 96 RKRVLVILDDVDQLE--QLQALVGNHDWFGFGSRIIITS-RDEHVLKS-HGVTNTYKVRGLDYVEALQLFHLKVSNGKQP 171 (794)
Q Consensus 96 ~~r~LlVlDd~~~~~--~~~~l~~~~~~~~~gs~IlvTt-R~~~v~~~-~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~ 171 (794)
+++-++|+|+++... ..+.++..+.....++++|++| ....+... ......+++..++.++....+.+.+....
T Consensus 131 a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~keg-- 208 (598)
T PRK09111 131 ARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEG-- 208 (598)
T ss_pred CCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcC--
Confidence 456689999997664 3666666554444566666555 43433322 22345789999999999999988763222
Q ss_pred ChhHHHHHHHHHHHhCCCchHHHHH
Q 003802 172 TDYRVELSKYVVNYAGGLPLAIEVL 196 (794)
Q Consensus 172 ~~~~~~~~~~i~~~~~g~Plai~~~ 196 (794)
.....+....|++.++|.+.-+...
T Consensus 209 i~i~~eAl~lIa~~a~Gdlr~al~~ 233 (598)
T PRK09111 209 VEVEDEALALIARAAEGSVRDGLSL 233 (598)
T ss_pred CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 1223366788999999988665443
No 132
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.89 E-value=0.00014 Score=77.40 Aligned_cols=119 Identities=23% Similarity=0.205 Sum_probs=77.6
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhhccccceEEEEechhhhcccChHHHHHHHHHHHhccccccccchhhhHHHHHHHhcC
Q 003802 17 FIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWRLCR 96 (794)
Q Consensus 17 vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 96 (794)
++.|.|+-++||||+++.+.....+. .+++............ .+... ...+.-..
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~---~iy~~~~d~~~~~~~l----~d~~~------------------~~~~~~~~ 93 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEE---IIYINFDDLRLDRIEL----LDLLR------------------AYIELKER 93 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcc---eEEEEecchhcchhhH----HHHHH------------------HHHHhhcc
Confidence 99999999999999997777765544 5666522111111111 11111 11111112
Q ss_pred CeEEEEEcCCCChHHHHHHhcCCCCCCCCCEEEEEeCChhhh-----hhc-CcCcEEEcCCCChHhHHHHH
Q 003802 97 KRVLVILDDVDQLEQLQALVGNHDWFGFGSRIIITSRDEHVL-----KSH-GVTNTYKVRGLDYVEALQLF 161 (794)
Q Consensus 97 ~r~LlVlDd~~~~~~~~~l~~~~~~~~~gs~IlvTtR~~~v~-----~~~-~~~~~~~l~~L~~~ea~~lf 161 (794)
++..++||.|....+|......+.+..+. +|++|+-+.... ... +....+++-||+..|-..+-
T Consensus 94 ~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~~ 163 (398)
T COG1373 94 EKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKLK 163 (398)
T ss_pred CCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhhc
Confidence 78899999999999999888877765555 888888875432 222 34557899999998876653
No 133
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.88 E-value=4e-05 Score=79.32 Aligned_cols=52 Identities=23% Similarity=0.314 Sum_probs=27.8
Q ss_pred cCcceeeeecCCCCCCCCCCCCCCceEEEcCCC-CcccccccccccccCceeccCCC
Q 003802 378 NNLRYLKWHEYPFNSLPVSFRPEKLFKLNLCNS-RIKYLWKGIKPLKELKFMNLSHS 433 (794)
Q Consensus 378 ~~l~~L~~~~~~~~~l~~~~~~~~L~~L~L~~n-~i~~l~~~~~~l~~L~~L~L~~n 433 (794)
.+++.|++.+|.+..+|. -+.+|++|.+++| .++.+|..+ .++|++|++++|
T Consensus 52 ~~l~~L~Is~c~L~sLP~--LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C 104 (426)
T PRK15386 52 RASGRLYIKDCDIESLPV--LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC 104 (426)
T ss_pred cCCCEEEeCCCCCcccCC--CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence 355666666666666652 2345666666552 344444433 235666666655
No 134
>PF14516 AAA_35: AAA-like domain
Probab=97.88 E-value=0.0016 Score=67.70 Aligned_cols=181 Identities=15% Similarity=0.166 Sum_probs=100.3
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhhccccceEEEEechhhh-cccChHHHHHHHHHHHhccccc-----ccc-----chh
Q 003802 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVS-VTRGLVPLQEQLLSEVLMERDL-----IIW-----DVH 84 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~-----~~~-----~~~ 84 (794)
..+.|.|+-.+|||+|...+.+..++.=-..++++...--+ ...+.....+.+...+...... ..+ ...
T Consensus 32 ~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~ 111 (331)
T PF14516_consen 32 SYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIGSKI 111 (331)
T ss_pred CEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcCChh
Confidence 58999999999999999999987654322345665332111 1223444444444333322111 111 111
Q ss_pred hhHHHHHHH-hc--CCeEEEEEcCCCChHH----HHHHhcCC----C----CCCCCCEEEEEeCChhh--hhh-----cC
Q 003802 85 KGINLIRWR-LC--RKRVLVILDDVDQLEQ----LQALVGNH----D----WFGFGSRIIITSRDEHV--LKS-----HG 142 (794)
Q Consensus 85 ~~~~~l~~~-l~--~~r~LlVlDd~~~~~~----~~~l~~~~----~----~~~~gs~IlvTtR~~~v--~~~-----~~ 142 (794)
.....+.+. ++ +++.+|++|+++..-. .+++...+ . ......-.++...+... ... ..
T Consensus 112 ~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~~~~~L~li~~~~t~~~~~~~~~~SPFN 191 (331)
T PF14516_consen 112 SCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNPIWQKLRLILAGSTEDYIILDINQSPFN 191 (331)
T ss_pred hHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCcccceEEEEEecCcccccccCCCCCCcc
Confidence 222334433 22 5899999999965422 11222111 0 00112222332222211 111 11
Q ss_pred cCcEEEcCCCChHhHHHHHHhhccCCCCCChhHHHHHHHHHHHhCCCchHHHHHhhhhcC
Q 003802 143 VTNTYKVRGLDYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIEVLGSFLCG 202 (794)
Q Consensus 143 ~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~a~~L~~ 202 (794)
....++|++++.+|...|..+.-.. .. ....++|...++|+|.-+..++..+..
T Consensus 192 Ig~~i~L~~Ft~~ev~~L~~~~~~~---~~---~~~~~~l~~~tgGhP~Lv~~~~~~l~~ 245 (331)
T PF14516_consen 192 IGQPIELPDFTPEEVQELAQRYGLE---FS---QEQLEQLMDWTGGHPYLVQKACYLLVE 245 (331)
T ss_pred cccceeCCCCCHHHHHHHHHhhhcc---CC---HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2347899999999999998876411 11 123889999999999999999998865
No 135
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.87 E-value=5e-05 Score=72.33 Aligned_cols=41 Identities=29% Similarity=0.486 Sum_probs=26.6
Q ss_pred hhhhHhHh-cCCCCeEEEEEEccCCCcHHHHHHHHHHHhhcc
Q 003802 2 EKMNGYLE-AGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ 42 (794)
Q Consensus 2 ~~l~~~l~-~~~~~~~vi~i~G~~GvGKTtLa~~v~~~~~~~ 42 (794)
+++.+.+. ......+++.|+|++|+|||+|+++++.++..+
T Consensus 10 ~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 10 ERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp HHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 45566663 233457999999999999999999999977666
No 136
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.87 E-value=0.00019 Score=78.55 Aligned_cols=156 Identities=13% Similarity=0.188 Sum_probs=89.4
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhhcccc--ceEEEEechhhhcccChHHHHHHHHHHHhccccccccchhhhHHHHHHH
Q 003802 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFE--ASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWR 93 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~~~~~~f~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~ 93 (794)
..+.|+|..|+|||.|++.+++.....+. .++|+. ..+...++...+... ....+++.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yit----------aeef~~el~~al~~~----------~~~~f~~~ 374 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVS----------SEEFTNEFINSIRDG----------KGDSFRRR 374 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee----------HHHHHHHHHHHHHhc----------cHHHHHHH
Confidence 35899999999999999999997765432 345554 112223333221110 12223333
Q ss_pred hcCCeEEEEEcCCCCh---HHHH-HHhcCCC-CCCCCCEEEEEeCCh---------hhhhhcCcCcEEEcCCCChHhHHH
Q 003802 94 LCRKRVLVILDDVDQL---EQLQ-ALVGNHD-WFGFGSRIIITSRDE---------HVLKSHGVTNTYKVRGLDYVEALQ 159 (794)
Q Consensus 94 l~~~r~LlVlDd~~~~---~~~~-~l~~~~~-~~~~gs~IlvTtR~~---------~v~~~~~~~~~~~l~~L~~~ea~~ 159 (794)
+++ -=+|||||++.. +.|+ .+...+. ....+..|||||+.. .+...+...-.+++...+++.-..
T Consensus 375 y~~-~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~a 453 (617)
T PRK14086 375 YRE-MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIA 453 (617)
T ss_pred hhc-CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHH
Confidence 332 347889999544 1121 2221111 012356688888752 122334455678999999999999
Q ss_pred HHHhhccCCCCCChhHHHHHHHHHHHhCCCchHHH
Q 003802 160 LFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIE 194 (794)
Q Consensus 160 lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~ 194 (794)
++.+++.... ....+++..-|++++.+..-.+.
T Consensus 454 IL~kka~~r~--l~l~~eVi~yLa~r~~rnvR~Le 486 (617)
T PRK14086 454 ILRKKAVQEQ--LNAPPEVLEFIASRISRNIRELE 486 (617)
T ss_pred HHHHHHHhcC--CCCCHHHHHHHHHhccCCHHHHH
Confidence 9998873322 22234667777777766544433
No 137
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.85 E-value=0.00025 Score=79.73 Aligned_cols=171 Identities=14% Similarity=0.105 Sum_probs=92.3
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEEechhhhcccChHHHHHHHHHHHhcc---ccc-cccchhhhHHHH
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLME---RDL-IIWDVHKGINLI 90 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~-~~~~~~~~~~~l 90 (794)
.+.+.++|+.|+||||+|+.+++.+.......-+- ........+.+....... .+. .....++ ++.+
T Consensus 38 ~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~--------~c~~c~~c~~i~~~~~~d~~~i~~~~~~~vd~-ir~i 108 (585)
T PRK14950 38 AHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGR--------PCGTCEMCRAIAEGSAVDVIEMDAASHTSVDD-AREI 108 (585)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCC--------CCccCHHHHHHhcCCCCeEEEEeccccCCHHH-HHHH
Confidence 46778999999999999999998653211100000 000011112221110000 000 0001111 1112
Q ss_pred HHHh-----cCCeEEEEEcCCCCh--HHHHHHhcCCCCCCCCCEEEEEeCC-hhhhhh-cCcCcEEEcCCCChHhHHHHH
Q 003802 91 RWRL-----CRKRVLVILDDVDQL--EQLQALVGNHDWFGFGSRIIITSRD-EHVLKS-HGVTNTYKVRGLDYVEALQLF 161 (794)
Q Consensus 91 ~~~l-----~~~r~LlVlDd~~~~--~~~~~l~~~~~~~~~gs~IlvTtR~-~~v~~~-~~~~~~~~l~~L~~~ea~~lf 161 (794)
.+.+ .+++-++|+|+++.. +..+.++..+......+.+|+++.. ..+... ......+++..++.++....+
T Consensus 109 i~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~tI~SR~~~i~f~~l~~~el~~~L 188 (585)
T PRK14950 109 IERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATILSRCQRFDFHRHSVADMAAHL 188 (585)
T ss_pred HHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHHHHhccceeeCCCCCHHHHHHHH
Confidence 2211 245678999999755 3466666655433456666665543 333222 223347889999999999888
Q ss_pred HhhccCCCCCChhHHHHHHHHHHHhCCCchHHHHH
Q 003802 162 HLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIEVL 196 (794)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 196 (794)
...+..... ....+.+..|++.++|.+..+...
T Consensus 189 ~~~a~~egl--~i~~eal~~La~~s~Gdlr~al~~ 221 (585)
T PRK14950 189 RKIAAAEGI--NLEPGALEAIARAATGSMRDAENL 221 (585)
T ss_pred HHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 877633221 123366788999999988655543
No 138
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.85 E-value=2.5e-06 Score=80.56 Aligned_cols=42 Identities=19% Similarity=0.218 Sum_probs=28.5
Q ss_pred ccccccccCceeccCCCcCccCCCC-----CCCCCCCCEEecccccc
Q 003802 417 KGIKPLKELKFMNLSHSCNLIRTPD-----FTGVPNLERLNLEGCTR 458 (794)
Q Consensus 417 ~~~~~l~~L~~L~L~~n~~~~~~~~-----~~~l~~L~~L~l~~~~~ 458 (794)
+.+.+||+|+..+||+|.+....|. +++-+.|.+|.+++|..
T Consensus 86 ~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGl 132 (388)
T COG5238 86 KALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGL 132 (388)
T ss_pred HHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCC
Confidence 3456677777888887776555442 56677788888877653
No 139
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.84 E-value=0.00024 Score=73.79 Aligned_cols=131 Identities=15% Similarity=0.177 Sum_probs=80.3
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEEechhhhcccChHHHHHHHHHHHhccccccccchhhhHHHHHHHh
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWRL 94 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l 94 (794)
-..+.|+|..|.|||.|++++++...+..+....+. ++.. ....+.+..+.. ...+.+++..
T Consensus 113 ~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y----~~se----~f~~~~v~a~~~----------~~~~~Fk~~y 174 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVY----LTSE----DFTNDFVKALRD----------NEMEKFKEKY 174 (408)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEe----ccHH----HHHHHHHHHHHh----------hhHHHHHHhh
Confidence 578899999999999999999998877777544443 1111 112222222111 1244555555
Q ss_pred cCCeEEEEEcCCCChHH---H-HHHhcCCC-CCCCCCEEEEEeCCh---------hhhhhcCcCcEEEcCCCChHhHHHH
Q 003802 95 CRKRVLVILDDVDQLEQ---L-QALVGNHD-WFGFGSRIIITSRDE---------HVLKSHGVTNTYKVRGLDYVEALQL 160 (794)
Q Consensus 95 ~~~r~LlVlDd~~~~~~---~-~~l~~~~~-~~~~gs~IlvTtR~~---------~v~~~~~~~~~~~l~~L~~~ea~~l 160 (794)
.-=++++||++-... | +++...+. -...|..||+|++.. .+...+...-.+++.+.+++....+
T Consensus 175 --~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~ai 252 (408)
T COG0593 175 --SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAI 252 (408)
T ss_pred --ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHH
Confidence 334788999854321 1 12211111 012355899999652 2333445566899999999999999
Q ss_pred HHhhc
Q 003802 161 FHLKV 165 (794)
Q Consensus 161 f~~~~ 165 (794)
+.+.+
T Consensus 253 L~kka 257 (408)
T COG0593 253 LRKKA 257 (408)
T ss_pred HHHHH
Confidence 98876
No 140
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.83 E-value=0.00028 Score=76.36 Aligned_cols=96 Identities=9% Similarity=0.094 Sum_probs=60.7
Q ss_pred CCeEEEEEcCCCChH--HHHHHhcCCCCCCCCCEEEEEeCC-hhhhhh-cCcCcEEEcCCCChHhHHHHHHhhccCCCCC
Q 003802 96 RKRVLVILDDVDQLE--QLQALVGNHDWFGFGSRIIITSRD-EHVLKS-HGVTNTYKVRGLDYVEALQLFHLKVSNGKQP 171 (794)
Q Consensus 96 ~~r~LlVlDd~~~~~--~~~~l~~~~~~~~~gs~IlvTtR~-~~v~~~-~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~ 171 (794)
+++-++|+|+++... ..+.+...+......+.+|++|.. ..+... ......+++.++++++..+.+.+.+....
T Consensus 120 ~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg-- 197 (451)
T PRK06305 120 SRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEG-- 197 (451)
T ss_pred CCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcC--
Confidence 566788999987653 355565555443456666666543 333222 22345789999999999998887653221
Q ss_pred ChhHHHHHHHHHHHhCCCchHH
Q 003802 172 TDYRVELSKYVVNYAGGLPLAI 193 (794)
Q Consensus 172 ~~~~~~~~~~i~~~~~g~Plai 193 (794)
....++.+..|++.++|.+.-+
T Consensus 198 ~~i~~~al~~L~~~s~gdlr~a 219 (451)
T PRK06305 198 IETSREALLPIARAAQGSLRDA 219 (451)
T ss_pred CCCCHHHHHHHHHHcCCCHHHH
Confidence 1123456788999999976433
No 141
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.81 E-value=0.00015 Score=64.49 Aligned_cols=23 Identities=48% Similarity=0.540 Sum_probs=21.3
Q ss_pred EEEEccCCCcHHHHHHHHHHHhh
Q 003802 18 IGICGMGGIGKTTLAKVLYNTLK 40 (794)
Q Consensus 18 i~i~G~~GvGKTtLa~~v~~~~~ 40 (794)
|.|+|+.|+|||++|+.+++...
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG 23 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc
Confidence 67999999999999999999875
No 142
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.80 E-value=2.2e-05 Score=53.56 Aligned_cols=35 Identities=34% Similarity=0.489 Sum_probs=25.3
Q ss_pred CCCCeEeCCCCCCccCchhhhccCCCCEEecCCCc
Q 003802 613 FSLEAIDLSGNNFFSLPSSINQLLKLKILCLEKCR 647 (794)
Q Consensus 613 ~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~ 647 (794)
++|++|++++|+|+.+|..+++|++|+.|++++|+
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCC
Confidence 46777777777777777667778888888888776
No 143
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.79 E-value=0.00044 Score=77.54 Aligned_cols=97 Identities=13% Similarity=0.130 Sum_probs=62.6
Q ss_pred CCeEEEEEcCCCChH--HHHHHhcCCCCCCCCCEEEE-EeCChhhhhh-cCcCcEEEcCCCChHhHHHHHHhhccCCCCC
Q 003802 96 RKRVLVILDDVDQLE--QLQALVGNHDWFGFGSRIII-TSRDEHVLKS-HGVTNTYKVRGLDYVEALQLFHLKVSNGKQP 171 (794)
Q Consensus 96 ~~r~LlVlDd~~~~~--~~~~l~~~~~~~~~gs~Ilv-TtR~~~v~~~-~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~ 171 (794)
+++-++|+|+++... .++.++..+......+.+|+ |++...+... ......+++.++++++....+.+.+....
T Consensus 120 ~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~eg-- 197 (614)
T PRK14971 120 GKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEG-- 197 (614)
T ss_pred CCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcC--
Confidence 456688999997664 46666665554345566555 4444444432 33445899999999999998887663222
Q ss_pred ChhHHHHHHHHHHHhCCCchHHH
Q 003802 172 TDYRVELSKYVVNYAGGLPLAIE 194 (794)
Q Consensus 172 ~~~~~~~~~~i~~~~~g~Plai~ 194 (794)
-....+.+..|++.++|...-+.
T Consensus 198 i~i~~~al~~La~~s~gdlr~al 220 (614)
T PRK14971 198 ITAEPEALNVIAQKADGGMRDAL 220 (614)
T ss_pred CCCCHHHHHHHHHHcCCCHHHHH
Confidence 12223567889999998765443
No 144
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.79 E-value=3.9e-05 Score=78.96 Aligned_cols=93 Identities=17% Similarity=0.120 Sum_probs=59.9
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhhc-cccceEEEEechhhhcccChHHHHHHHHHHHhccccccccch-----hhhHHH
Q 003802 16 RFIGICGMGGIGKTTLAKVLYNTLKD-QFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDV-----HKGINL 89 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-----~~~~~~ 89 (794)
..++|+|++|+|||||++.+++.+.. +|+..+|+....+ +...+.++++++...+....-+..... +...+.
T Consensus 169 q~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgE--R~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~ 246 (415)
T TIGR00767 169 QRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDE--RPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEK 246 (415)
T ss_pred CEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCC--CCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHH
Confidence 56889999999999999999997654 4988889874322 235777888888544332222211111 111111
Q ss_pred HHHH-hcCCeEEEEEcCCCChH
Q 003802 90 IRWR-LCRKRVLVILDDVDQLE 110 (794)
Q Consensus 90 l~~~-l~~~r~LlVlDd~~~~~ 110 (794)
.... ..+++.+|++|++....
T Consensus 247 Ae~~~~~GkdVVLlIDEitR~a 268 (415)
T TIGR00767 247 AKRLVEHKKDVVILLDSITRLA 268 (415)
T ss_pred HHHHHHcCCCeEEEEEChhHHH
Confidence 1111 35799999999996654
No 145
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.77 E-value=0.0017 Score=61.84 Aligned_cols=182 Identities=18% Similarity=0.215 Sum_probs=100.2
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEEechhhhcccChHHHHHHHHHHHhccccccc-cchhhhHHHHH
Q 003802 13 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLII-WDVHKGINLIR 91 (794)
Q Consensus 13 ~~~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~l~ 91 (794)
++-+++.++|.-|.|||.++|.......+.--.++.++ ........+...+...+........ ...+.....+.
T Consensus 49 d~qg~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~-----~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~ 123 (269)
T COG3267 49 DGQGILAVTGEVGSGKTVLRRALLASLNEDQVAVVVID-----KPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELA 123 (269)
T ss_pred cCCceEEEEecCCCchhHHHHHHHHhcCCCceEEEEec-----CcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHH
Confidence 34569999999999999999955554332222233433 2233445566666666444111111 11222222233
Q ss_pred HHh-cCCe-EEEEEcCCCChH--HHHHHh--cCCC-CCCCCCEEEEEeCChh-------hhhhcC--cCcEEEcCCCChH
Q 003802 92 WRL-CRKR-VLVILDDVDQLE--QLQALV--GNHD-WFGFGSRIIITSRDEH-------VLKSHG--VTNTYKVRGLDYV 155 (794)
Q Consensus 92 ~~l-~~~r-~LlVlDd~~~~~--~~~~l~--~~~~-~~~~gs~IlvTtR~~~-------v~~~~~--~~~~~~l~~L~~~ 155 (794)
... +++| ..+++|++.+.. ..+.+. .... .....-+|+..-..+- +..... ..-.|++.|++++
T Consensus 124 al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~ 203 (269)
T COG3267 124 ALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEA 203 (269)
T ss_pred HHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChH
Confidence 322 4566 899999986543 233222 1111 1111122333322210 111111 1223899999999
Q ss_pred hHHHHHHhhccCCCCCCh-hHHHHHHHHHHHhCCCchHHHHHhhh
Q 003802 156 EALQLFHLKVSNGKQPTD-YRVELSKYVVNYAGGLPLAIEVLGSF 199 (794)
Q Consensus 156 ea~~lf~~~~~~~~~~~~-~~~~~~~~i~~~~~g~Plai~~~a~~ 199 (794)
+...+++.+..+...+.+ ...+....|..+..|.|.+|..++..
T Consensus 204 ~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~~ 248 (269)
T COG3267 204 ETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLATL 248 (269)
T ss_pred HHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHHH
Confidence 999999888744432222 23456778999999999999987664
No 146
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.77 E-value=0.0011 Score=67.53 Aligned_cols=93 Identities=15% Similarity=0.105 Sum_probs=60.6
Q ss_pred CCeEEEEEcCCCChHH--HHHHhcCCCCCCCCCEEEEEeCC-hhhhhh-cCcCcEEEcCCCChHhHHHHHHhhccCCCCC
Q 003802 96 RKRVLVILDDVDQLEQ--LQALVGNHDWFGFGSRIIITSRD-EHVLKS-HGVTNTYKVRGLDYVEALQLFHLKVSNGKQP 171 (794)
Q Consensus 96 ~~r~LlVlDd~~~~~~--~~~l~~~~~~~~~gs~IlvTtR~-~~v~~~-~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~ 171 (794)
+++-++|||+++.+.. -.+++..+.....++.+|++|.. ..+... .+....+.+.+.+.+++.+.+.... .
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~~-----~ 186 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQG-----V 186 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHcC-----C
Confidence 4667999999987753 44555444433457766666654 344332 3334578999999999998887531 1
Q ss_pred ChhHHHHHHHHHHHhCCCchHHHHH
Q 003802 172 TDYRVELSKYVVNYAGGLPLAIEVL 196 (794)
Q Consensus 172 ~~~~~~~~~~i~~~~~g~Plai~~~ 196 (794)
. ...+..++..++|.|..+...
T Consensus 187 ~---~~~a~~~~~l~~G~p~~A~~~ 208 (319)
T PRK08769 187 S---ERAAQEALDAARGHPGLAAQW 208 (319)
T ss_pred C---hHHHHHHHHHcCCCHHHHHHH
Confidence 1 133567899999999876544
No 147
>PRK08116 hypothetical protein; Validated
Probab=97.76 E-value=0.00011 Score=73.70 Aligned_cols=102 Identities=24% Similarity=0.225 Sum_probs=56.4
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhhccccceEEEEechhhhcccChHHHHHHHHHHHhccccccccchhhhHHHHHHHhc
Q 003802 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWRLC 95 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~ 95 (794)
.-+.|+|..|+|||.||..+++.+..+...+++++ ..++...+........ ......+.+.+.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~----------~~~ll~~i~~~~~~~~-------~~~~~~~~~~l~ 177 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVN----------FPQLLNRIKSTYKSSG-------KEDENEIIRSLV 177 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE----------HHHHHHHHHHHHhccc-------cccHHHHHHHhc
Confidence 45889999999999999999998765544456654 1223334433321110 111223334444
Q ss_pred CCeEEEEEcCC--CChHHHHH--HhcCCC-CCCCCCEEEEEeCCh
Q 003802 96 RKRVLVILDDV--DQLEQLQA--LVGNHD-WFGFGSRIIITSRDE 135 (794)
Q Consensus 96 ~~r~LlVlDd~--~~~~~~~~--l~~~~~-~~~~gs~IlvTtR~~ 135 (794)
+-. ||||||+ ....+|.. +...+. ....+..+||||...
T Consensus 178 ~~d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 178 NAD-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred CCC-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 444 8999999 33333321 221111 012456689998753
No 148
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.76 E-value=0.0016 Score=72.30 Aligned_cols=99 Identities=14% Similarity=0.158 Sum_probs=64.5
Q ss_pred CCeEEEEEcCCCChH--HHHHHhcCCCCCCCCCEEEEEeCC-hhhhhh-cCcCcEEEcCCCChHhHHHHHHhhccCCCCC
Q 003802 96 RKRVLVILDDVDQLE--QLQALVGNHDWFGFGSRIIITSRD-EHVLKS-HGVTNTYKVRGLDYVEALQLFHLKVSNGKQP 171 (794)
Q Consensus 96 ~~r~LlVlDd~~~~~--~~~~l~~~~~~~~~gs~IlvTtR~-~~v~~~-~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~ 171 (794)
+++-++|+|+++... .++.++..+....+.+.+|++|.. ..+... ......+++.+++.++..+.+.+.+....
T Consensus 118 ~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~eg-- 195 (563)
T PRK06647 118 SRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQ-- 195 (563)
T ss_pred CCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHHHHHhceEEEecCCCHHHHHHHHHHHHHHcC--
Confidence 566689999997664 467777766544456666655543 333322 22344689999999999988887663222
Q ss_pred ChhHHHHHHHHHHHhCCCchHHHHH
Q 003802 172 TDYRVELSKYVVNYAGGLPLAIEVL 196 (794)
Q Consensus 172 ~~~~~~~~~~i~~~~~g~Plai~~~ 196 (794)
....++.+..|++.++|.+..+...
T Consensus 196 i~id~eAl~lLa~~s~GdlR~alsl 220 (563)
T PRK06647 196 IKYEDEALKWIAYKSTGSVRDAYTL 220 (563)
T ss_pred CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 1233467788999999988654433
No 149
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.75 E-value=0.00043 Score=70.14 Aligned_cols=128 Identities=16% Similarity=0.209 Sum_probs=70.4
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhhcc-c-cceEEEEechhhhcccChHHHHHHHHHHHhccccccccchhhhHHHHHHHh
Q 003802 17 FIGICGMGGIGKTTLAKVLYNTLKDQ-F-EASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWRL 94 (794)
Q Consensus 17 vi~i~G~~GvGKTtLa~~v~~~~~~~-f-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l 94 (794)
-+.++|++|+|||++|+.+++.+... + ...-|+. ++. .++...+.+.. .......+.+ .
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~----v~~--------~~l~~~~~g~~------~~~~~~~~~~-a 120 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVS----VTR--------DDLVGQYIGHT------APKTKEILKR-A 120 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEE----ecH--------HHHhHhhcccc------hHHHHHHHHH-c
Confidence 57899999999999999998854322 1 1122332 111 11222211111 1111122222 2
Q ss_pred cCCeEEEEEcCCCCh-----------HHHHHHhcCCCCCCCCCEEEEEeCChhhhhhcC--------cCcEEEcCCCChH
Q 003802 95 CRKRVLVILDDVDQL-----------EQLQALVGNHDWFGFGSRIIITSRDEHVLKSHG--------VTNTYKVRGLDYV 155 (794)
Q Consensus 95 ~~~r~LlVlDd~~~~-----------~~~~~l~~~~~~~~~gs~IlvTtR~~~v~~~~~--------~~~~~~l~~L~~~ 155 (794)
..-+|+||+++.. +.++.+...+.....+.+||+++.......... ....+++++++.+
T Consensus 121 --~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~e 198 (284)
T TIGR02880 121 --MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEA 198 (284)
T ss_pred --cCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHH
Confidence 3358899999633 224445444443344566777765432211111 1347899999999
Q ss_pred hHHHHHHhhc
Q 003802 156 EALQLFHLKV 165 (794)
Q Consensus 156 ea~~lf~~~~ 165 (794)
|..+++...+
T Consensus 199 dl~~I~~~~l 208 (284)
T TIGR02880 199 ELLVIAGLML 208 (284)
T ss_pred HHHHHHHHHH
Confidence 9999998876
No 150
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.75 E-value=0.0007 Score=75.93 Aligned_cols=181 Identities=15% Similarity=0.103 Sum_probs=93.1
Q ss_pred hhHhHhcCCCCeEEEEEEccCCCcHHHHHHHHHHHhhcc-ccceEEEEechhhhcccChHHHHHHHHHHHhcc---ccc-
Q 003802 4 MNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ-FEASSFLANVREVSVTRGLVPLQEQLLSEVLME---RDL- 78 (794)
Q Consensus 4 l~~~l~~~~~~~~vi~i~G~~GvGKTtLa~~v~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~- 78 (794)
|..++..+. -.+.+.++|+.|+||||+|+.+++.+-.. .+....-. .......+.+....... .+.
T Consensus 28 L~~~l~~~r-l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~--------Cg~C~~C~~i~~g~h~D~~ei~~~ 98 (620)
T PRK14948 28 LKNALISNR-IAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEP--------CGKCELCRAIAAGNALDVIEIDAA 98 (620)
T ss_pred HHHHHHcCC-CCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCC--------CcccHHHHHHhcCCCccEEEEecc
Confidence 444444432 24678899999999999999999965321 11000000 00011111221110000 000
Q ss_pred cccchhhhHHHHHHHh-----cCCeEEEEEcCCCChH--HHHHHhcCCCCCCCCCEEEE-EeCChhhhhh-cCcCcEEEc
Q 003802 79 IIWDVHKGINLIRWRL-----CRKRVLVILDDVDQLE--QLQALVGNHDWFGFGSRIII-TSRDEHVLKS-HGVTNTYKV 149 (794)
Q Consensus 79 ~~~~~~~~~~~l~~~l-----~~~r~LlVlDd~~~~~--~~~~l~~~~~~~~~gs~Ilv-TtR~~~v~~~-~~~~~~~~l 149 (794)
.....+.. +.+.+.+ .+++-++|+|+++... .++.++..+......+.+|+ |+....+... ......+++
T Consensus 99 ~~~~vd~I-Reii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpTIrSRc~~~~f 177 (620)
T PRK14948 99 SNTGVDNI-RELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTIISRCQRFDF 177 (620)
T ss_pred ccCCHHHH-HHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHHHHhheeEEEe
Confidence 00001111 1111111 2456688999998663 46666665543334454444 4443333322 223457888
Q ss_pred CCCChHhHHHHHHhhccCCCCCChhHHHHHHHHHHHhCCCchHHHHH
Q 003802 150 RGLDYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIEVL 196 (794)
Q Consensus 150 ~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 196 (794)
..++.++....+.+.+..... ....+.+..|++.++|.+..+...
T Consensus 178 ~~l~~~ei~~~L~~ia~kegi--~is~~al~~La~~s~G~lr~A~~l 222 (620)
T PRK14948 178 RRIPLEAMVQHLSEIAEKESI--EIEPEALTLVAQRSQGGLRDAESL 222 (620)
T ss_pred cCCCHHHHHHHHHHHHHHhCC--CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 899999988888776532211 122355788999999987655443
No 151
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.75 E-value=2e-05 Score=53.74 Aligned_cols=37 Identities=30% Similarity=0.316 Sum_probs=28.0
Q ss_pred CCceEEEcCCCCcccccccccccccCceeccCCCcCc
Q 003802 400 EKLFKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNL 436 (794)
Q Consensus 400 ~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~n~~~ 436 (794)
++|++|++++|.|+.+|..+.+|++|++|++++|.+.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCC
Confidence 3678888888888888877888888888888888654
No 152
>CHL00181 cbbX CbbX; Provisional
Probab=97.71 E-value=0.0008 Score=68.12 Aligned_cols=130 Identities=17% Similarity=0.193 Sum_probs=71.5
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhhc-cc-cceEEEEechhhhcccChHHHHHHHHHHHhccccccccchhhhHHHHHHH
Q 003802 16 RFIGICGMGGIGKTTLAKVLYNTLKD-QF-EASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWR 93 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~~~~~-~f-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~ 93 (794)
..+.++|++|+|||++|+.+++.... .+ ...-|+. ++ ..+ +.....+.. .......+.+
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~----v~----~~~----l~~~~~g~~------~~~~~~~l~~- 120 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLT----VT----RDD----LVGQYIGHT------APKTKEVLKK- 120 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEE----ec----HHH----HHHHHhccc------hHHHHHHHHH-
Confidence 45789999999999999999885432 12 1122332 11 111 222211110 0111112222
Q ss_pred hcCCeEEEEEcCCCCh-----------HHHHHHhcCCCCCCCCCEEEEEeCChhhhhhc--------CcCcEEEcCCCCh
Q 003802 94 LCRKRVLVILDDVDQL-----------EQLQALVGNHDWFGFGSRIIITSRDEHVLKSH--------GVTNTYKVRGLDY 154 (794)
Q Consensus 94 l~~~r~LlVlDd~~~~-----------~~~~~l~~~~~~~~~gs~IlvTtR~~~v~~~~--------~~~~~~~l~~L~~ 154 (794)
. ..-+|++|+++.. +..+.+...........+||+++......... .....+.+++++.
T Consensus 121 a--~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~ 198 (287)
T CHL00181 121 A--MGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTP 198 (287)
T ss_pred c--cCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCH
Confidence 2 2348999999643 22344444443334456777777654332111 1244789999999
Q ss_pred HhHHHHHHhhcc
Q 003802 155 VEALQLFHLKVS 166 (794)
Q Consensus 155 ~ea~~lf~~~~~ 166 (794)
+|..+++...+.
T Consensus 199 ~el~~I~~~~l~ 210 (287)
T CHL00181 199 EELLQIAKIMLE 210 (287)
T ss_pred HHHHHHHHHHHH
Confidence 999999988763
No 153
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.71 E-value=0.0035 Score=65.00 Aligned_cols=102 Identities=15% Similarity=0.110 Sum_probs=70.0
Q ss_pred CeEEEEEcCCCCh-----------HHHHHHhcCCCCCCCCCEEEEEeCChhhhh----hcC--cCcEEEcCCCChHhHHH
Q 003802 97 KRVLVILDDVDQL-----------EQLQALVGNHDWFGFGSRIIITSRDEHVLK----SHG--VTNTYKVRGLDYVEALQ 159 (794)
Q Consensus 97 ~r~LlVlDd~~~~-----------~~~~~l~~~~~~~~~gs~IlvTtR~~~v~~----~~~--~~~~~~l~~L~~~ea~~ 159 (794)
+|-++|+||+... .+|...+.. .+-.+||++|-+....+ .+. ....+.|...+.+.|.+
T Consensus 148 ~~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv~----~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~ 223 (431)
T PF10443_consen 148 RRPVVVIDNFLHKAEENDFIYDKLAEWAASLVQ----NNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQ 223 (431)
T ss_pred cCCEEEEcchhccCcccchHHHHHHHHHHHHHh----cCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHH
Confidence 3679999998332 246555544 45678999888754433 332 34467889999999999
Q ss_pred HHHhhccCCCCC-------------C-----hhHHHHHHHHHHHhCCCchHHHHHhhhhcC
Q 003802 160 LFHLKVSNGKQP-------------T-----DYRVELSKYVVNYAGGLPLAIEVLGSFLCG 202 (794)
Q Consensus 160 lf~~~~~~~~~~-------------~-----~~~~~~~~~i~~~~~g~Plai~~~a~~L~~ 202 (794)
+...+....... . ....+.....++.+||--.-+..+++.++.
T Consensus 224 yV~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiks 284 (431)
T PF10443_consen 224 YVLSQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKS 284 (431)
T ss_pred HHHHHhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHc
Confidence 999887432110 0 123345667888999999999999998876
No 154
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.69 E-value=0.00058 Score=72.72 Aligned_cols=149 Identities=15% Similarity=0.159 Sum_probs=79.0
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEEechhhhcccChHHHHHHHHHHHhccccccccchhhhHHHHHHH
Q 003802 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWR 93 (794)
Q Consensus 14 ~~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~ 93 (794)
..+-|.++|++|+|||++|+.+++.....| +.+. . .++...... +.......+.+.
T Consensus 164 ~p~gvLL~GppGtGKT~lAkaia~~~~~~~---i~v~----~------~~l~~~~~g-----------~~~~~i~~~f~~ 219 (389)
T PRK03992 164 PPKGVLLYGPPGTGKTLLAKAVAHETNATF---IRVV----G------SELVQKFIG-----------EGARLVRELFEL 219 (389)
T ss_pred CCCceEEECCCCCChHHHHHHHHHHhCCCE---EEee----h------HHHhHhhcc-----------chHHHHHHHHHH
Confidence 356789999999999999999999765432 1121 0 011111100 001112222222
Q ss_pred h-cCCeEEEEEcCCCChH-------------H---HHHHhcCCCC--CCCCCEEEEEeCChhhh-hhc----CcCcEEEc
Q 003802 94 L-CRKRVLVILDDVDQLE-------------Q---LQALVGNHDW--FGFGSRIIITSRDEHVL-KSH----GVTNTYKV 149 (794)
Q Consensus 94 l-~~~r~LlVlDd~~~~~-------------~---~~~l~~~~~~--~~~gs~IlvTtR~~~v~-~~~----~~~~~~~l 149 (794)
. ...+.+|++|+++... . +..+...... ...+..||.||...... ..+ .-...+++
T Consensus 220 a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v 299 (389)
T PRK03992 220 AREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDILDPAILRPGRFDRIIEV 299 (389)
T ss_pred HHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhhCCHHHcCCccCceEEEE
Confidence 2 2467899999997541 1 2222222211 12345677677653321 111 12457899
Q ss_pred CCCChHhHHHHHHhhccCCCCCChhHHHHHHHHHHHhCCC
Q 003802 150 RGLDYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGL 189 (794)
Q Consensus 150 ~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 189 (794)
+..+.++..++|+.+..+..-... .....+++.+.|.
T Consensus 300 ~~P~~~~R~~Il~~~~~~~~~~~~---~~~~~la~~t~g~ 336 (389)
T PRK03992 300 PLPDEEGRLEILKIHTRKMNLADD---VDLEELAELTEGA 336 (389)
T ss_pred CCCCHHHHHHHHHHHhccCCCCCc---CCHHHHHHHcCCC
Confidence 999999999999877632221111 1134556666554
No 155
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.69 E-value=0.0023 Score=65.30 Aligned_cols=91 Identities=13% Similarity=0.195 Sum_probs=60.4
Q ss_pred CCeEEEEEcCCCChH--HHHHHhcCCCCCCCCCEEEEEeCC-hhhhhh-cCcCcEEEcCCCChHhHHHHHHhhccCCCCC
Q 003802 96 RKRVLVILDDVDQLE--QLQALVGNHDWFGFGSRIIITSRD-EHVLKS-HGVTNTYKVRGLDYVEALQLFHLKVSNGKQP 171 (794)
Q Consensus 96 ~~r~LlVlDd~~~~~--~~~~l~~~~~~~~~gs~IlvTtR~-~~v~~~-~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~ 171 (794)
+++-++|+|+++.+. ...+++..+....+++.+|++|.+ ..+... .+....+.+.+++++++.+.+.... ..
T Consensus 107 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~~~---~~- 182 (319)
T PRK06090 107 NGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTPPSTAQAMQWLKGQG---IT- 182 (319)
T ss_pred CCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeEeCCCCCHHHHHHHHHHcC---Cc-
Confidence 455688999998774 366666555444556666655554 444333 3445588999999999999887542 11
Q ss_pred ChhHHHHHHHHHHHhCCCchHHHHH
Q 003802 172 TDYRVELSKYVVNYAGGLPLAIEVL 196 (794)
Q Consensus 172 ~~~~~~~~~~i~~~~~g~Plai~~~ 196 (794)
....++..++|.|..+..+
T Consensus 183 ------~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 183 ------VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred ------hHHHHHHHcCCCHHHHHHH
Confidence 1346788999999876544
No 156
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.68 E-value=0.00033 Score=78.89 Aligned_cols=79 Identities=14% Similarity=-0.047 Sum_probs=47.2
Q ss_pred HHHHHHHhcCCeEEEEEcCCCCh--HHHHHHhcCCCCCCCCCEEEE--EeCChh-hhhhc-CcCcEEEcCCCChHhHHHH
Q 003802 87 INLIRWRLCRKRVLVILDDVDQL--EQLQALVGNHDWFGFGSRIII--TSRDEH-VLKSH-GVTNTYKVRGLDYVEALQL 160 (794)
Q Consensus 87 ~~~l~~~l~~~r~LlVlDd~~~~--~~~~~l~~~~~~~~~gs~Ilv--TtR~~~-v~~~~-~~~~~~~l~~L~~~ea~~l 160 (794)
+..+.+.++++++.++-|+.|.. ..|+.+...+....+...|++ ||++.. +...+ .....+.+.+++.++.+.+
T Consensus 282 Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~I 361 (615)
T TIGR02903 282 QNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALI 361 (615)
T ss_pred HHHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHH
Confidence 45666677777777776555433 235555544443344445555 566432 11111 2233678899999999999
Q ss_pred HHhhc
Q 003802 161 FHLKV 165 (794)
Q Consensus 161 f~~~~ 165 (794)
+++.+
T Consensus 362 l~~~a 366 (615)
T TIGR02903 362 VLNAA 366 (615)
T ss_pred HHHHH
Confidence 99876
No 157
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.68 E-value=0.0019 Score=67.29 Aligned_cols=135 Identities=17% Similarity=0.237 Sum_probs=70.0
Q ss_pred hhhHhHhcCCCCeEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEEechhhhcccChHHHHHHHHHHHhccccccccc
Q 003802 3 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWD 82 (794)
Q Consensus 3 ~l~~~l~~~~~~~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 82 (794)
++..++..+ .-..++.++|++|+|||++|+.+++..... ...+.. +. .. .+..++.+......
T Consensus 32 ~l~~~~~~~-~~~~~lll~G~~G~GKT~la~~l~~~~~~~---~~~i~~----~~-~~-~~~i~~~l~~~~~~------- 94 (316)
T PHA02544 32 TFKSIVKKG-RIPNMLLHSPSPGTGKTTVAKALCNEVGAE---VLFVNG----SD-CR-IDFVRNRLTRFAST------- 94 (316)
T ss_pred HHHHHHhcC-CCCeEEEeeCcCCCCHHHHHHHHHHHhCcc---ceEecc----Cc-cc-HHHHHHHHHHHHHh-------
Confidence 344444432 235678889999999999999999876322 233331 11 11 11111111110000
Q ss_pred hhhhHHHHHHHhcCCeEEEEEcCCCCh---HHHHHHhcCCCCCCCCCEEEEEeCChh-hhhh-cCcCcEEEcCCCChHhH
Q 003802 83 VHKGINLIRWRLCRKRVLVILDDVDQL---EQLQALVGNHDWFGFGSRIIITSRDEH-VLKS-HGVTNTYKVRGLDYVEA 157 (794)
Q Consensus 83 ~~~~~~~l~~~l~~~r~LlVlDd~~~~---~~~~~l~~~~~~~~~gs~IlvTtR~~~-v~~~-~~~~~~~~l~~L~~~ea 157 (794)
. ...+.+-++|+|+++.. +....+...+.....++++|+||.... +... .+....+.++..+.++.
T Consensus 95 --------~-~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~~i~~~~p~~~~~ 165 (316)
T PHA02544 95 --------V-SLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCRVIDFGVPTKEEQ 165 (316)
T ss_pred --------h-cccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhceEEEeCCCCHHHH
Confidence 0 01134567899999765 222233222222245678888886532 1111 12223567777777777
Q ss_pred HHHHHh
Q 003802 158 LQLFHL 163 (794)
Q Consensus 158 ~~lf~~ 163 (794)
.+++..
T Consensus 166 ~~il~~ 171 (316)
T PHA02544 166 IEMMKQ 171 (316)
T ss_pred HHHHHH
Confidence 666543
No 158
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.68 E-value=0.0013 Score=67.23 Aligned_cols=91 Identities=13% Similarity=0.133 Sum_probs=60.8
Q ss_pred CCeEEEEEcCCCChH--HHHHHhcCCCCCCCCCEEEEEeCCh-hhhhh-cCcCcEEEcCCCChHhHHHHHHhhccCCCCC
Q 003802 96 RKRVLVILDDVDQLE--QLQALVGNHDWFGFGSRIIITSRDE-HVLKS-HGVTNTYKVRGLDYVEALQLFHLKVSNGKQP 171 (794)
Q Consensus 96 ~~r~LlVlDd~~~~~--~~~~l~~~~~~~~~gs~IlvTtR~~-~v~~~-~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~ 171 (794)
+++-++|+|+++.+. ...+++..+....+++.+|++|... .+... .+....+++.++++++..+.+..... .
T Consensus 106 g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~~~~~~~~~~~~~~L~~~~~----~ 181 (325)
T PRK06871 106 GGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWLIHPPEEQQALDWLQAQSS----A 181 (325)
T ss_pred CCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEEeCCCCCHHHHHHHHHHHhc----c
Confidence 566788899998775 3666666555445677766666653 44322 33455899999999999999887541 1
Q ss_pred ChhHHHHHHHHHHHhCCCchHH
Q 003802 172 TDYRVELSKYVVNYAGGLPLAI 193 (794)
Q Consensus 172 ~~~~~~~~~~i~~~~~g~Plai 193 (794)
. ...+...+..++|.|..+
T Consensus 182 ~---~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 182 E---ISEILTALRINYGRPLLA 200 (325)
T ss_pred C---hHHHHHHHHHcCCCHHHH
Confidence 1 123556788899999644
No 159
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.66 E-value=0.00014 Score=65.74 Aligned_cols=35 Identities=34% Similarity=0.371 Sum_probs=27.7
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhhccccceEEEE
Q 003802 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~ 50 (794)
+.+.|+|++|+||||+|+.++.........++++.
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~ 37 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYID 37 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEEC
Confidence 57899999999999999999997665543455554
No 160
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.66 E-value=0.0005 Score=71.54 Aligned_cols=131 Identities=17% Similarity=0.205 Sum_probs=79.3
Q ss_pred CCCeEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEEechhhhcccChHHHHHHHHHHHhccccccccchhhhHHHHH
Q 003802 12 LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIR 91 (794)
Q Consensus 12 ~~~~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~ 91 (794)
......+.+.|++|+|||+||.+++.. ..|+.+-.++ +.++...-+ .+-.......+.
T Consensus 535 ~s~lvSvLl~Gp~~sGKTaLAA~iA~~--S~FPFvKiiS-------pe~miG~sE-------------saKc~~i~k~F~ 592 (744)
T KOG0741|consen 535 RSPLVSVLLEGPPGSGKTALAAKIALS--SDFPFVKIIS-------PEDMIGLSE-------------SAKCAHIKKIFE 592 (744)
T ss_pred cCcceEEEEecCCCCChHHHHHHHHhh--cCCCeEEEeC-------hHHccCccH-------------HHHHHHHHHHHH
Confidence 345678889999999999999999986 7788776654 111110000 000011112223
Q ss_pred HHhcCCeEEEEEcCCCChHHHHHHhcCCC------------C-CCCCCEEE--EEeCChhhhhhcCc----CcEEEcCCC
Q 003802 92 WRLCRKRVLVILDDVDQLEQLQALVGNHD------------W-FGFGSRII--ITSRDEHVLKSHGV----TNTYKVRGL 152 (794)
Q Consensus 92 ~~l~~~r~LlVlDd~~~~~~~~~l~~~~~------------~-~~~gs~Il--vTtR~~~v~~~~~~----~~~~~l~~L 152 (794)
+..+..=-.+|+||++..-+|-.+.+.+. . ...|-|.+ -||..+.+...|+- ...+.++.+
T Consensus 593 DAYkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl 672 (744)
T KOG0741|consen 593 DAYKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNL 672 (744)
T ss_pred HhhcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCcc
Confidence 33445667899999988877766555441 1 13355544 46666777777653 346788888
Q ss_pred Ch-HhHHHHHHhh
Q 003802 153 DY-VEALQLFHLK 164 (794)
Q Consensus 153 ~~-~ea~~lf~~~ 164 (794)
+. ++..+.+.+.
T Consensus 673 ~~~~~~~~vl~~~ 685 (744)
T KOG0741|consen 673 TTGEQLLEVLEEL 685 (744)
T ss_pred CchHHHHHHHHHc
Confidence 76 6666666543
No 161
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.59 E-value=0.0021 Score=65.99 Aligned_cols=171 Identities=16% Similarity=0.128 Sum_probs=92.1
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhh---------------ccccceEEEEechhhhcccChHHHHHHHHHHHhccccc-
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNTLK---------------DQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDL- 78 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~~~---------------~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~- 78 (794)
.+...++|+.|+||+++|..+++.+- ..++...|+.-.... ..... ..............
T Consensus 26 ~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~-~g~~~---~~~~~~~~~~~~~~~ 101 (314)
T PRK07399 26 APAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQH-QGKLI---TASEAEEAGLKRKAP 101 (314)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccc-ccccc---chhhhhhcccccccc
Confidence 58999999999999999999988542 123344554311000 00000 00001110000000
Q ss_pred cccchhhhHHHHHHHh-----cCCeEEEEEcCCCChHH--HHHHhcCCCCCCCCCEEEEEeCChhhhhh-cCcCcEEEcC
Q 003802 79 IIWDVHKGINLIRWRL-----CRKRVLVILDDVDQLEQ--LQALVGNHDWFGFGSRIIITSRDEHVLKS-HGVTNTYKVR 150 (794)
Q Consensus 79 ~~~~~~~~~~~l~~~l-----~~~r~LlVlDd~~~~~~--~~~l~~~~~~~~~gs~IlvTtR~~~v~~~-~~~~~~~~l~ 150 (794)
..-..++ ++.+.+.+ .+++-++|+|+++.+.. ..+++..+....+..-|++|++...+... .+....+++.
T Consensus 102 ~~I~id~-ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp~~~fILi~~~~~~Ll~TI~SRcq~i~f~ 180 (314)
T PRK07399 102 PQIRLEQ-IREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPGNGTLILIAPSPESLLPTIVSRCQIIPFY 180 (314)
T ss_pred ccCcHHH-HHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCCCCeEEEEECChHhCcHHHHhhceEEecC
Confidence 0000111 22333333 35677899999977643 55555544333333344455554444332 3345689999
Q ss_pred CCChHhHHHHHHhhccCCCCCChhHHHHHHHHHHHhCCCchHHHH
Q 003802 151 GLDYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIEV 195 (794)
Q Consensus 151 ~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 195 (794)
++++++..+.+.+..... ... .....++..++|.|..+..
T Consensus 181 ~l~~~~~~~~L~~~~~~~--~~~---~~~~~l~~~a~Gs~~~al~ 220 (314)
T PRK07399 181 RLSDEQLEQVLKRLGDEE--ILN---INFPELLALAQGSPGAAIA 220 (314)
T ss_pred CCCHHHHHHHHHHhhccc--cch---hHHHHHHHHcCCCHHHHHH
Confidence 999999999998864211 111 1135788999999976654
No 162
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.59 E-value=0.00043 Score=67.33 Aligned_cols=161 Identities=17% Similarity=0.178 Sum_probs=94.4
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHHHHh--hccccceEEEEechhhhcccChH---HHHHHHHHHHhccccccccchhhhH
Q 003802 13 DDVRFIGICGMGGIGKTTLAKVLYNTL--KDQFEASSFLANVREVSVTRGLV---PLQEQLLSEVLMERDLIIWDVHKGI 87 (794)
Q Consensus 13 ~~~~vi~i~G~~GvGKTtLa~~v~~~~--~~~f~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~ 87 (794)
...++...+||+|.|||+-|+.++... .+-|+.++.=.+ .+....+. .-.+...+- ....
T Consensus 55 ~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~ln---aSderGisvvr~Kik~fakl-~~~~----------- 119 (346)
T KOG0989|consen 55 RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELN---ASDERGISVVREKIKNFAKL-TVLL----------- 119 (346)
T ss_pred cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhc---ccccccccchhhhhcCHHHH-hhcc-----------
Confidence 457889999999999999999999854 244555543211 11111111 000000000 0000
Q ss_pred HHHHHHh--cCCe-EEEEEcCCCCh--HHHHHHhcCCCCCCCCCE-EEEEeCChhhhhhc-CcCcEEEcCCCChHhHHHH
Q 003802 88 NLIRWRL--CRKR-VLVILDDVDQL--EQLQALVGNHDWFGFGSR-IIITSRDEHVLKSH-GVTNTYKVRGLDYVEALQL 160 (794)
Q Consensus 88 ~~l~~~l--~~~r-~LlVlDd~~~~--~~~~~l~~~~~~~~~gs~-IlvTtR~~~v~~~~-~~~~~~~l~~L~~~ea~~l 160 (794)
.... ..++ -.+|||+++.+ +.|.++.....+....++ |+||+.-..+.... ..-..++..+|.+++..+-
T Consensus 120 ---~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC~KfrFk~L~d~~iv~r 196 (346)
T KOG0989|consen 120 ---KRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRCQKFRFKKLKDEDIVDR 196 (346)
T ss_pred ---ccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhhHHHhcCCCcchHHHHHH
Confidence 0000 0123 47889999877 458888877665455555 45565544443332 2234788999999999998
Q ss_pred HHhhccCCCCCChhHHHHHHHHHHHhCCCchHH
Q 003802 161 FHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAI 193 (794)
Q Consensus 161 f~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 193 (794)
++..+..+. .+...+..+.|++.++|--.-+
T Consensus 197 L~~Ia~~E~--v~~d~~al~~I~~~S~GdLR~A 227 (346)
T KOG0989|consen 197 LEKIASKEG--VDIDDDALKLIAKISDGDLRRA 227 (346)
T ss_pred HHHHHHHhC--CCCCHHHHHHHHHHcCCcHHHH
Confidence 888773332 2333467888999998854333
No 163
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.58 E-value=2.3e-05 Score=88.45 Aligned_cols=132 Identities=18% Similarity=0.176 Sum_probs=95.3
Q ss_pred CCCCCCEEecCCCCCccCCCCccccCCCCCCeEeCCCCCCccCchhhhccCCCCEEecCCCcCCCCCCCCCccccccccc
Q 003802 586 GLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLPSSINQLLKLKILCLEKCRNLKSLPELPPEIVFVGAE 665 (794)
Q Consensus 586 ~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~~~~~~~L~~L~l~ 665 (794)
-+|+|++|.+++-.+..+.......++++|..||+|+++++.+ .+++++++|+.|.+.+-..... . .+ .++-
T Consensus 146 ~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~-~----~l--~~LF 217 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESY-Q----DL--IDLF 217 (699)
T ss_pred hCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCch-h----hH--HHHh
Confidence 4789999999987755544455567899999999999999988 5889999999999887654321 1 11 1345
Q ss_pred cccccccccccccccCCCC--c---eEEEeCCCCchhhhhhhhhHHHHHHHHHHhhhccccccCc
Q 003802 666 DCTSLETISAFAKLSRSPN--I---ALNFLNCFKLVEDQVSKDNLAVTLMKQWLLSYHSLVAWTD 725 (794)
Q Consensus 666 ~~~~L~~l~~~~n~~~~~~--~---~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~~~~~l~~~~~ 725 (794)
++.+|+.||++........ . ...-..+|+|+.||.|++.++....+.++.+.++++.+..
T Consensus 218 ~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~~ 282 (699)
T KOG3665|consen 218 NLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQIAA 282 (699)
T ss_pred cccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhhhh
Confidence 5677777777654222211 1 1123459999999999999999999999987777666654
No 164
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.58 E-value=0.00023 Score=69.59 Aligned_cols=36 Identities=22% Similarity=0.250 Sum_probs=28.5
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEE
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~ 50 (794)
...+.++|.+|+|||+||..+++.+...-..+++++
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it 134 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIIT 134 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 457889999999999999999997655444555654
No 165
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.57 E-value=0.0017 Score=67.20 Aligned_cols=92 Identities=15% Similarity=0.077 Sum_probs=60.7
Q ss_pred CCeEEEEEcCCCChHH--HHHHhcCCCCCCCCCEEEEEeCC-hhhhhh-cCcCcEEEcCCCChHhHHHHHHhhccCCCCC
Q 003802 96 RKRVLVILDDVDQLEQ--LQALVGNHDWFGFGSRIIITSRD-EHVLKS-HGVTNTYKVRGLDYVEALQLFHLKVSNGKQP 171 (794)
Q Consensus 96 ~~r~LlVlDd~~~~~~--~~~l~~~~~~~~~gs~IlvTtR~-~~v~~~-~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~ 171 (794)
+++-++|+|+++.+.. ..+++..+.....++.+|.+|.. ..+... .+....+.+.+++++++.+.+.+.. + .
T Consensus 107 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq~~~~~~~~~~~~~~~L~~~~--~--~ 182 (334)
T PRK07993 107 GGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCRLHYLAPPPEQYALTWLSREV--T--M 182 (334)
T ss_pred CCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccccccCCCCCHHHHHHHHHHcc--C--C
Confidence 5677899999987743 56666555444556666666654 444432 3344578999999999999887542 1 1
Q ss_pred ChhHHHHHHHHHHHhCCCchHHH
Q 003802 172 TDYRVELSKYVVNYAGGLPLAIE 194 (794)
Q Consensus 172 ~~~~~~~~~~i~~~~~g~Plai~ 194 (794)
. .+.+..++..++|.|..+.
T Consensus 183 ~---~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 183 S---QDALLAALRLSAGAPGAAL 202 (334)
T ss_pred C---HHHHHHHHHHcCCCHHHHH
Confidence 1 2336678999999996543
No 166
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.56 E-value=0.00041 Score=75.02 Aligned_cols=136 Identities=20% Similarity=0.237 Sum_probs=72.1
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhhccc-----cceEEEEechhhhcccChHHHHHHHHHHHhccccccccchhhhHHH
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQF-----EASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINL 89 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~~~~~f-----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 89 (794)
.+-|.++|++|+|||++|+.+++.+...+ ....|+. +.... +....... . ........+.
T Consensus 216 p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~----v~~~e----Ll~kyvGe----t---e~~ir~iF~~ 280 (512)
T TIGR03689 216 PKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLN----IKGPE----LLNKYVGE----T---ERQIRLIFQR 280 (512)
T ss_pred CcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEe----ccchh----hcccccch----H---HHHHHHHHHH
Confidence 45688999999999999999999765442 1233333 11110 00000000 0 0000011111
Q ss_pred HHHH-hcCCeEEEEEcCCCChH---------H-----HHHHhcCCCCC--CCCCEEEEEeCChhhh-hhc----CcCcEE
Q 003802 90 IRWR-LCRKRVLVILDDVDQLE---------Q-----LQALVGNHDWF--GFGSRIIITSRDEHVL-KSH----GVTNTY 147 (794)
Q Consensus 90 l~~~-l~~~r~LlVlDd~~~~~---------~-----~~~l~~~~~~~--~~gs~IlvTtR~~~v~-~~~----~~~~~~ 147 (794)
.++. ..+++++++||+++..- + +..++..+... ..+..||.||...... ..+ .-+..+
T Consensus 281 Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I 360 (512)
T TIGR03689 281 AREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKI 360 (512)
T ss_pred HHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCceEEEeccCChhhCCHhhcCccccceEE
Confidence 1211 13578999999996431 1 22333333211 1234455555543321 111 224568
Q ss_pred EcCCCChHhHHHHHHhhc
Q 003802 148 KVRGLDYVEALQLFHLKV 165 (794)
Q Consensus 148 ~l~~L~~~ea~~lf~~~~ 165 (794)
+++..+.++..++|+.+.
T Consensus 361 ~~~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 361 RIERPDAEAAADIFSKYL 378 (512)
T ss_pred EeCCCCHHHHHHHHHHHh
Confidence 999999999999999876
No 167
>CHL00176 ftsH cell division protein; Validated
Probab=97.56 E-value=0.0016 Score=73.06 Aligned_cols=148 Identities=18% Similarity=0.208 Sum_probs=81.4
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEEechhhhcccChHHHHHHHHHHHhccccccccchhhhHHHHHHHh
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWRL 94 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l 94 (794)
.+-|.++|++|+|||++|+.++...... |+. ++. ..+.. .... . ........+.+..
T Consensus 216 p~gVLL~GPpGTGKT~LAralA~e~~~p-----~i~----is~-s~f~~---~~~g----~------~~~~vr~lF~~A~ 272 (638)
T CHL00176 216 PKGVLLVGPPGTGKTLLAKAIAGEAEVP-----FFS----ISG-SEFVE---MFVG----V------GAARVRDLFKKAK 272 (638)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCC-----eee----ccH-HHHHH---Hhhh----h------hHHHHHHHHHHHh
Confidence 4568899999999999999999865322 222 110 01110 0000 0 0112223334444
Q ss_pred cCCeEEEEEcCCCChH----------------HHHHHhcCCC--CCCCCCEEEEEeCChhhhh-hc----CcCcEEEcCC
Q 003802 95 CRKRVLVILDDVDQLE----------------QLQALVGNHD--WFGFGSRIIITSRDEHVLK-SH----GVTNTYKVRG 151 (794)
Q Consensus 95 ~~~r~LlVlDd~~~~~----------------~~~~l~~~~~--~~~~gs~IlvTtR~~~v~~-~~----~~~~~~~l~~ 151 (794)
+..+++|++||++... .+..++.... ....+..||.||....... .+ .-...+.++.
T Consensus 273 ~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~l 352 (638)
T CHL00176 273 ENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDAALLRPGRFDRQITVSL 352 (638)
T ss_pred cCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhhhhhccccCceEEEECC
Confidence 5678999999996441 1333333322 1234555666665533222 11 2245788888
Q ss_pred CChHhHHHHHHhhccCCCCCChhHHHHHHHHHHHhCC
Q 003802 152 LDYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGG 188 (794)
Q Consensus 152 L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g 188 (794)
.+.++-.++++.++..... ........+++.+.|
T Consensus 353 Pd~~~R~~IL~~~l~~~~~---~~d~~l~~lA~~t~G 386 (638)
T CHL00176 353 PDREGRLDILKVHARNKKL---SPDVSLELIARRTPG 386 (638)
T ss_pred CCHHHHHHHHHHHHhhccc---chhHHHHHHHhcCCC
Confidence 8888989999887633211 112345667777776
No 168
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.55 E-value=0.0029 Score=70.52 Aligned_cols=97 Identities=13% Similarity=0.151 Sum_probs=60.8
Q ss_pred CCeEEEEEcCCCCh--HHHHHHhcCCCCCCCCCEEEE-EeCChhhhhh-cCcCcEEEcCCCChHhHHHHHHhhccCCCCC
Q 003802 96 RKRVLVILDDVDQL--EQLQALVGNHDWFGFGSRIII-TSRDEHVLKS-HGVTNTYKVRGLDYVEALQLFHLKVSNGKQP 171 (794)
Q Consensus 96 ~~r~LlVlDd~~~~--~~~~~l~~~~~~~~~gs~Ilv-TtR~~~v~~~-~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~ 171 (794)
+++-++|+|+++.. ..+..++..+........+|+ ||....+... ......++..+++.++..+.+...+.....
T Consensus 118 ~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi- 196 (559)
T PRK05563 118 AKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPATILSRCQRFDFKRISVEDIVERLKYILDKEGI- 196 (559)
T ss_pred CCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcHHHHhHheEEecCCCCHHHHHHHHHHHHHHcCC-
Confidence 56778899999866 346777665543334555454 4444443322 233457889999999998888876632211
Q ss_pred ChhHHHHHHHHHHHhCCCchHHH
Q 003802 172 TDYRVELSKYVVNYAGGLPLAIE 194 (794)
Q Consensus 172 ~~~~~~~~~~i~~~~~g~Plai~ 194 (794)
....+.+..|++.++|.+..+.
T Consensus 197 -~i~~~al~~ia~~s~G~~R~al 218 (559)
T PRK05563 197 -EYEDEALRLIARAAEGGMRDAL 218 (559)
T ss_pred -CCCHHHHHHHHHHcCCCHHHHH
Confidence 1223567788888888775443
No 169
>PRK08181 transposase; Validated
Probab=97.54 E-value=0.00025 Score=70.47 Aligned_cols=35 Identities=23% Similarity=0.117 Sum_probs=27.6
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhhccccceEEEE
Q 003802 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~ 50 (794)
.-+.|+|++|+|||.||..+++........++|+.
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~ 141 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTR 141 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeee
Confidence 45889999999999999999997655444456654
No 170
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.51 E-value=0.0002 Score=73.45 Aligned_cols=35 Identities=23% Similarity=0.275 Sum_probs=28.6
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhhccccceEEEE
Q 003802 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~ 50 (794)
.-+.++|+.|+|||.||..+++.+...-..++|+.
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t 218 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRT 218 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEE
Confidence 67899999999999999999997655444566765
No 171
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.50 E-value=0.015 Score=60.03 Aligned_cols=91 Identities=20% Similarity=0.199 Sum_probs=58.8
Q ss_pred CCeEEEEEcCCCChH--HHHHHhcCCCCCCCCCEEEEEe-CChhhhhh-cCcCcEEEcCCCChHhHHHHHHhhccCCCCC
Q 003802 96 RKRVLVILDDVDQLE--QLQALVGNHDWFGFGSRIIITS-RDEHVLKS-HGVTNTYKVRGLDYVEALQLFHLKVSNGKQP 171 (794)
Q Consensus 96 ~~r~LlVlDd~~~~~--~~~~l~~~~~~~~~gs~IlvTt-R~~~v~~~-~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~ 171 (794)
+++-++|+|+++.+. ....++..+....+++.+|.+| +...+... .+....+.+.++++++..+.+.... .
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~-----~ 205 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG-----V 205 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC-----C
Confidence 455688899998774 4666666655445677555554 44444432 3344689999999999999987642 1
Q ss_pred ChhHHHHHHHHHHHhCCCchHHHHH
Q 003802 172 TDYRVELSKYVVNYAGGLPLAIEVL 196 (794)
Q Consensus 172 ~~~~~~~~~~i~~~~~g~Plai~~~ 196 (794)
.+ ...++..++|.|..+..+
T Consensus 206 ~~-----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 206 AD-----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred Ch-----HHHHHHHcCCCHHHHHHH
Confidence 11 123577789999755443
No 172
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.50 E-value=0.00036 Score=68.60 Aligned_cols=50 Identities=18% Similarity=0.255 Sum_probs=39.4
Q ss_pred hhhhHhHhcCCCCeEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEEe
Q 003802 2 EKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLAN 51 (794)
Q Consensus 2 ~~l~~~l~~~~~~~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~~ 51 (794)
+.+.+++..+-+.-.++.|+|++|+|||++|.+++......-..++|++.
T Consensus 10 ~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~ 59 (225)
T PRK09361 10 KMLDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDT 59 (225)
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEC
Confidence 45666666555567899999999999999999998866555567888873
No 173
>PTZ00202 tuzin; Provisional
Probab=97.50 E-value=0.011 Score=61.41 Aligned_cols=150 Identities=13% Similarity=0.104 Sum_probs=86.4
Q ss_pred hhhhHhHhcCC-CCeEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEEechhhhcccChHHHHHHHHHHHhccccccc
Q 003802 2 EKMNGYLEAGL-DDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLII 80 (794)
Q Consensus 2 ~~l~~~l~~~~-~~~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 80 (794)
+++...+...+ +..++++|+|++|+|||||++.+..... ...++.+. . ...+.+..++.+++.....
T Consensus 272 a~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~----~~qL~vNp-----r-g~eElLr~LL~ALGV~p~~-- 339 (550)
T PTZ00202 272 SWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG----MPAVFVDV-----R-GTEDTLRSVVKALGVPNVE-- 339 (550)
T ss_pred HHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC----ceEEEECC-----C-CHHHHHHHHHHHcCCCCcc--
Confidence 34555565332 2357999999999999999999997543 22444322 1 4578888899887753222
Q ss_pred cchhhhHHHHHHHh-----c-CCeEEEEEc--CCCChHH-HHHHhcCCCCCCCCCEEEEEeCChhhhh---hcCcCcEEE
Q 003802 81 WDVHKGINLIRWRL-----C-RKRVLVILD--DVDQLEQ-LQALVGNHDWFGFGSRIIITSRDEHVLK---SHGVTNTYK 148 (794)
Q Consensus 81 ~~~~~~~~~l~~~l-----~-~~r~LlVlD--d~~~~~~-~~~l~~~~~~~~~gs~IlvTtR~~~v~~---~~~~~~~~~ 148 (794)
...++...|.+.+ . +++.+||+- +-.+..- +.+.. .+.+...-|.|++----+.... .+..-..|-
T Consensus 340 -~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~v-~la~drr~ch~v~evpleslt~~~~~lprldf~~ 417 (550)
T PTZ00202 340 -ACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEVV-ALACDRRLCHVVIEVPLESLTIANTLLPRLDFYL 417 (550)
T ss_pred -cHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHHH-HHHccchhheeeeeehHhhcchhcccCccceeEe
Confidence 1223334443332 2 566666654 2222221 22221 1222244677777554443211 123344788
Q ss_pred cCCCChHhHHHHHHhhc
Q 003802 149 VRGLDYVEALQLFHLKV 165 (794)
Q Consensus 149 l~~L~~~ea~~lf~~~~ 165 (794)
+++++.++|.++-....
T Consensus 418 vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 418 VPNFSRSQAFAYTQHAI 434 (550)
T ss_pred cCCCCHHHHHHHHhhcc
Confidence 99999999998876554
No 174
>PRK12377 putative replication protein; Provisional
Probab=97.47 E-value=0.00036 Score=68.46 Aligned_cols=36 Identities=22% Similarity=0.212 Sum_probs=29.6
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEE
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~ 50 (794)
...+.|+|+.|+|||.||..+++.+......++++.
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~ 136 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVT 136 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEE
Confidence 357899999999999999999998766555566765
No 175
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.47 E-value=0.0019 Score=68.38 Aligned_cols=129 Identities=19% Similarity=0.215 Sum_probs=70.3
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEEechhhhcccChHHHHHHHHHHHhccccccccchhhhHHHHHHH
Q 003802 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWR 93 (794)
Q Consensus 14 ~~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~ 93 (794)
..+-|.++|++|+|||++|+.+++.....| +.+.. + .+....... ......+.+...
T Consensus 178 ~pkgvLL~GppGTGKT~LAkalA~~l~~~f---i~i~~----s------~l~~k~~ge----------~~~~lr~lf~~A 234 (398)
T PTZ00454 178 PPRGVLLYGPPGTGKTMLAKAVAHHTTATF---IRVVG----S------EFVQKYLGE----------GPRMVRDVFRLA 234 (398)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhcCCCE---EEEeh----H------HHHHHhcch----------hHHHHHHHHHHH
Confidence 457788999999999999999999755433 22210 0 111111100 001111122222
Q ss_pred hcCCeEEEEEcCCCChH----------------HHHHHhcCCC--CCCCCCEEEEEeCChhhh-hh-c---CcCcEEEcC
Q 003802 94 LCRKRVLVILDDVDQLE----------------QLQALVGNHD--WFGFGSRIIITSRDEHVL-KS-H---GVTNTYKVR 150 (794)
Q Consensus 94 l~~~r~LlVlDd~~~~~----------------~~~~l~~~~~--~~~~gs~IlvTtR~~~v~-~~-~---~~~~~~~l~ 150 (794)
....+.+|++|+++..- .+..+...+. ....+..||.||...... .. . .-...+++.
T Consensus 235 ~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~ 314 (398)
T PTZ00454 235 RENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFP 314 (398)
T ss_pred HhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeC
Confidence 34578999999976431 1222322221 112355677777654322 21 1 224568888
Q ss_pred CCChHhHHHHHHhhc
Q 003802 151 GLDYVEALQLFHLKV 165 (794)
Q Consensus 151 ~L~~~ea~~lf~~~~ 165 (794)
..+.++...+|....
T Consensus 315 ~P~~~~R~~Il~~~~ 329 (398)
T PTZ00454 315 LPDRRQKRLIFQTIT 329 (398)
T ss_pred CcCHHHHHHHHHHHH
Confidence 888888888887665
No 176
>PRK09183 transposase/IS protein; Provisional
Probab=97.46 E-value=0.00045 Score=68.91 Aligned_cols=35 Identities=29% Similarity=0.210 Sum_probs=25.4
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhhccccceEEEE
Q 003802 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~ 50 (794)
..+.|+|+.|+|||+||..++......-..+.|+.
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~ 137 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTT 137 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 46789999999999999999886433322334443
No 177
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.46 E-value=0.0049 Score=64.62 Aligned_cols=41 Identities=27% Similarity=0.426 Sum_probs=34.1
Q ss_pred hhhhHhHhcCC-CCeEEEEEEccCCCcHHHHHHHHHHHhhcc
Q 003802 2 EKMNGYLEAGL-DDVRFIGICGMGGIGKTTLAKVLYNTLKDQ 42 (794)
Q Consensus 2 ~~l~~~l~~~~-~~~~vi~i~G~~GvGKTtLa~~v~~~~~~~ 42 (794)
+.+.+.+.... +...+|+|.|.=|+|||++.+.+.+.+++.
T Consensus 6 ~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~ 47 (325)
T PF07693_consen 6 KALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELKED 47 (325)
T ss_pred HHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 45667777653 678999999999999999999999977766
No 178
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.45 E-value=0.0019 Score=72.30 Aligned_cols=94 Identities=13% Similarity=0.122 Sum_probs=58.7
Q ss_pred CCeEEEEEcCCCChH--HHHHHhcCCCCCCCCCEEEE-EeCChhhhhh-cCcCcEEEcCCCChHhHHHHHHhhccCCCCC
Q 003802 96 RKRVLVILDDVDQLE--QLQALVGNHDWFGFGSRIII-TSRDEHVLKS-HGVTNTYKVRGLDYVEALQLFHLKVSNGKQP 171 (794)
Q Consensus 96 ~~r~LlVlDd~~~~~--~~~~l~~~~~~~~~gs~Ilv-TtR~~~v~~~-~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~ 171 (794)
+++-++|+|+++... ..+.++..+......+.+|+ ||....+... ......+++.+++.++....+...+....
T Consensus 118 ~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~eg-- 195 (576)
T PRK14965 118 SRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEG-- 195 (576)
T ss_pred CCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhC--
Confidence 456689999997664 35666655543344565554 5444444432 23345788999999998888877652221
Q ss_pred ChhHHHHHHHHHHHhCCCch
Q 003802 172 TDYRVELSKYVVNYAGGLPL 191 (794)
Q Consensus 172 ~~~~~~~~~~i~~~~~g~Pl 191 (794)
.....+....|++.++|...
T Consensus 196 i~i~~~al~~la~~a~G~lr 215 (576)
T PRK14965 196 ISISDAALALVARKGDGSMR 215 (576)
T ss_pred CCCCHHHHHHHHHHcCCCHH
Confidence 12234567788899988664
No 179
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.44 E-value=0.00023 Score=64.77 Aligned_cols=103 Identities=19% Similarity=0.159 Sum_probs=51.8
Q ss_pred CCEEecccccccccccccccCccccccccccccccccccccccCCCCCccEEEecCCCCCCCC-CccccCCCCCcEEEcc
Q 003802 448 LERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKL-PQDLGEVECLEELDVG 526 (794)
Q Consensus 448 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~-~~~~~~l~~L~~L~l~ 526 (794)
...+||++|.+... ..|..++.|.+|.+++|+++..-|.--..+++|+.|.|.+|++...- -..+..++.|++|.+-
T Consensus 44 ~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll 121 (233)
T KOG1644|consen 44 FDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLL 121 (233)
T ss_pred cceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeec
Confidence 34444444443222 13444455555555555544433333333455566666555543211 1124556667777776
Q ss_pred CccCcccC----cccccCCCCCEEEcCCCC
Q 003802 527 GTAIRQIP----PSIVQLVNLKIFSLHGCK 552 (794)
Q Consensus 527 ~~~l~~l~----~~l~~l~~L~~L~l~~~~ 552 (794)
+|.++.-. -.+..+|+|+.|++.+-.
T Consensus 122 ~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 122 GNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred CCchhcccCceeEEEEecCcceEeehhhhh
Confidence 76665332 235567777777776543
No 180
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.44 E-value=0.0023 Score=66.50 Aligned_cols=69 Identities=13% Similarity=0.197 Sum_probs=46.5
Q ss_pred CCeEEEEEcCCCChHH--HHHHhcCCCCCCCCCEEEEEeCCh-hhhhh-cCcCcEEEcCCCChHhHHHHHHhh
Q 003802 96 RKRVLVILDDVDQLEQ--LQALVGNHDWFGFGSRIIITSRDE-HVLKS-HGVTNTYKVRGLDYVEALQLFHLK 164 (794)
Q Consensus 96 ~~r~LlVlDd~~~~~~--~~~l~~~~~~~~~gs~IlvTtR~~-~v~~~-~~~~~~~~l~~L~~~ea~~lf~~~ 164 (794)
+++-++|+|+++.... .++++..+.....++.+|++|.+. .+... .+....+++.++++++..+.+...
T Consensus 109 ~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 109 SNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred cCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHHHHhhceeeeCCCCCHHHHHHHHHHc
Confidence 4566789999976643 566666655445677777676653 33332 334558999999999998888653
No 181
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.41 E-value=0.00044 Score=75.11 Aligned_cols=136 Identities=17% Similarity=0.192 Sum_probs=78.3
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEEechhhhcccChHHHHHHHHHHHhccccccccchhhhHHHHHHHh
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWRL 94 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l 94 (794)
-++++++||+|||||.|++.+++.....|-.. + ...+.....++.--+..+. .....+-+-....
T Consensus 350 GpILcLVGPPGVGKTSLgkSIA~al~RkfvR~---s-LGGvrDEAEIRGHRRTYIG-----------amPGrIiQ~mkka 414 (782)
T COG0466 350 GPILCLVGPPGVGKTSLGKSIAKALGRKFVRI---S-LGGVRDEAEIRGHRRTYIG-----------AMPGKIIQGMKKA 414 (782)
T ss_pred CcEEEEECCCCCCchhHHHHHHHHhCCCEEEE---e-cCccccHHHhccccccccc-----------cCChHHHHHHHHh
Confidence 47999999999999999999999877665321 1 1112111111111111111 1112222222234
Q ss_pred cCCeEEEEEcCCCChH------HHHHHhcCCCCCCC-------------CCEEE-EEeCCh-h-h-hhhcCcCcEEEcCC
Q 003802 95 CRKRVLVILDDVDQLE------QLQALVGNHDWFGF-------------GSRII-ITSRDE-H-V-LKSHGVTNTYKVRG 151 (794)
Q Consensus 95 ~~~r~LlVlDd~~~~~------~~~~l~~~~~~~~~-------------gs~Il-vTtR~~-~-v-~~~~~~~~~~~l~~ 151 (794)
+.+.-+++||.++-+. .-.+++..+....+ =|.|+ |||-+. . + +..+..++++++.+
T Consensus 415 ~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl~tIP~PLlDRMEiI~lsg 494 (782)
T COG0466 415 GVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSLDTIPAPLLDRMEVIRLSG 494 (782)
T ss_pred CCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEEEeecCccccCChHHhcceeeeeecC
Confidence 5678899999986553 24455544421111 24444 444432 1 2 23455678999999
Q ss_pred CChHhHHHHHHhhc
Q 003802 152 LDYVEALQLFHLKV 165 (794)
Q Consensus 152 L~~~ea~~lf~~~~ 165 (794)
.+++|-.++-+++.
T Consensus 495 Yt~~EKl~IAk~~L 508 (782)
T COG0466 495 YTEDEKLEIAKRHL 508 (782)
T ss_pred CChHHHHHHHHHhc
Confidence 99999999888775
No 182
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.41 E-value=0.00021 Score=65.01 Aligned_cols=101 Identities=18% Similarity=0.163 Sum_probs=53.3
Q ss_pred CceEEEcCCCCcccccccccccccCceeccCCCcCccCCCCCC-CCCCCCEEecccccccc--cccccccCccccccccc
Q 003802 401 KLFKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLIRTPDFT-GVPNLERLNLEGCTRLL--EVHQSVGTLKRLILLNL 477 (794)
Q Consensus 401 ~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~n~~~~~~~~~~-~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l 477 (794)
+...+||++|.+..++ .|..+++|.+|.|.+|.+....|.+. .+++|..|.|.+|.+.. ++ ..+..|++|++|.+
T Consensus 43 ~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl-~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDL-DPLASCPKLEYLTL 120 (233)
T ss_pred ccceecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhc-chhccCCccceeee
Confidence 4445555555555443 24555666666666666555555533 34556666666655421 11 23445566666666
Q ss_pred cccccccc---cccccCCCCCccEEEecC
Q 003802 478 KDCRNLVS---FPKNVCLMKSLKILCLCG 503 (794)
Q Consensus 478 ~~n~~~~~---~~~~~~~l~~L~~L~L~~ 503 (794)
-+|+.... ---.+..+++|++||..+
T Consensus 121 l~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred cCCchhcccCceeEEEEecCcceEeehhh
Confidence 66553321 112345667777777655
No 183
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.41 E-value=0.00055 Score=66.06 Aligned_cols=34 Identities=35% Similarity=0.476 Sum_probs=30.0
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhhccccceEEEE
Q 003802 17 FIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (794)
Q Consensus 17 vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~ 50 (794)
.++|.|..|.|||+++..+.......|+.+.++.
T Consensus 15 r~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t 48 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLIT 48 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEe
Confidence 5779999999999999999998889997776664
No 184
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.40 E-value=7.8e-05 Score=84.26 Aligned_cols=155 Identities=22% Similarity=0.303 Sum_probs=102.6
Q ss_pred ccccccccccccccccc-ccccc-CCCCCccEEEecCCCCCC-CCCccccCCCCCcEEEccCccCcccCcccccCCCCCE
Q 003802 469 LKRLILLNLKDCRNLVS-FPKNV-CLMKSLKILCLCGCLKLE-KLPQDLGEVECLEELDVGGTAIRQIPPSIVQLVNLKI 545 (794)
Q Consensus 469 l~~L~~L~l~~n~~~~~-~~~~~-~~l~~L~~L~L~~~~~~~-~~~~~~~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~ 545 (794)
-.+|++|++++...... -|..+ ..+|+|+.|.+++-.+.. .+.....++++|..||+|+++++.+ .+++++++|+.
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQV 199 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHH
Confidence 36899999998554322 22223 357999999998855433 2334467899999999999999988 78899999999
Q ss_pred EEcCCCCCCCCccccccchhccccCCCCCCCccccCCCCCCCCCCCEEecCCCCCccCC-C----CccccCCCCCCeEeC
Q 003802 546 FSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGA-I----PSDIGSLFSLEAIDL 620 (794)
Q Consensus 546 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~-~----~~~~~~l~~L~~L~L 620 (794)
|.+.+-.... ...+..+-++++|+.||+|......+. + .+.-..+|+|+.||.
T Consensus 200 L~mrnLe~e~----------------------~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDc 257 (699)
T KOG3665|consen 200 LSMRNLEFES----------------------YQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDC 257 (699)
T ss_pred HhccCCCCCc----------------------hhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEec
Confidence 9987644110 111223566889999999987643321 1 111235788999998
Q ss_pred CCCCCc-cC-chhhhccCCCCEEecCCC
Q 003802 621 SGNNFF-SL-PSSINQLLKLKILCLEKC 646 (794)
Q Consensus 621 ~~n~l~-~l-p~~l~~l~~L~~L~L~~n 646 (794)
|++.++ .+ ...+..-|+|+.+..-+|
T Consensus 258 SgTdi~~~~le~ll~sH~~L~~i~~~~~ 285 (699)
T KOG3665|consen 258 SGTDINEEILEELLNSHPNLQQIAALDC 285 (699)
T ss_pred CCcchhHHHHHHHHHhCccHhhhhhhhh
Confidence 888776 33 223344566666655443
No 185
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.39 E-value=0.0024 Score=64.27 Aligned_cols=153 Identities=19% Similarity=0.203 Sum_probs=89.6
Q ss_pred hhhHhHhcCCCC-eEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEEechhhhcccChHHHHHHHHHHHhcccccccc
Q 003802 3 KMNGYLEAGLDD-VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIW 81 (794)
Q Consensus 3 ~l~~~l~~~~~~-~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 81 (794)
.+..++...+.. +.+|.|+|-+|.|||.+++++.+... ...+|+. +-.....+...+.|+.+....+.+...
T Consensus 17 ~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n---~~~vw~n----~~ecft~~~lle~IL~~~~~~d~dg~~ 89 (438)
T KOG2543|consen 17 RLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLN---LENVWLN----CVECFTYAILLEKILNKSQLADKDGDK 89 (438)
T ss_pred HHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcC---Ccceeee----hHHhccHHHHHHHHHHHhccCCCchhh
Confidence 455555554443 55669999999999999999998652 2458887 444567777788888876422222111
Q ss_pred ------chhhhHHHHHH--Hhc--CCeEEEEEcCCCChHHHHHHh--------cCCCCCCCCCEEEEEeCCh--h-hhhh
Q 003802 82 ------DVHKGINLIRW--RLC--RKRVLVILDDVDQLEQLQALV--------GNHDWFGFGSRIIITSRDE--H-VLKS 140 (794)
Q Consensus 82 ------~~~~~~~~l~~--~l~--~~r~LlVlDd~~~~~~~~~l~--------~~~~~~~~gs~IlvTtR~~--~-v~~~ 140 (794)
...+.+..+.+ ... ++.++||+|+++...+.++.. ...+ .+ .-+|+++-.. . ....
T Consensus 90 ~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~--~~-~i~iils~~~~e~~y~~n 166 (438)
T KOG2543|consen 90 VEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLN--EP-TIVIILSAPSCEKQYLIN 166 (438)
T ss_pred hhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhC--CC-ceEEEEeccccHHHhhcc
Confidence 11112222332 111 468999999998776533221 1111 22 3344444332 1 1222
Q ss_pred cCcC--cEEEcCCCChHhHHHHHHhhc
Q 003802 141 HGVT--NTYKVRGLDYVEALQLFHLKV 165 (794)
Q Consensus 141 ~~~~--~~~~l~~L~~~ea~~lf~~~~ 165 (794)
++.. ..+.....+.+|..+++.+.-
T Consensus 167 ~g~~~i~~l~fP~Ys~~e~~~Il~~~~ 193 (438)
T KOG2543|consen 167 TGTLEIVVLHFPQYSVEETQVILSRDN 193 (438)
T ss_pred cCCCCceEEecCCCCHHHHHHHHhcCC
Confidence 3433 356678889999999987654
No 186
>PRK06921 hypothetical protein; Provisional
Probab=97.38 E-value=0.00035 Score=69.85 Aligned_cols=36 Identities=25% Similarity=0.252 Sum_probs=29.2
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhhcc-ccceEEEE
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQ-FEASSFLA 50 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~~~~~-f~~~~~~~ 50 (794)
...+.++|..|+|||.||..+++.+.++ -..++|+.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~ 153 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFP 153 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEE
Confidence 4678999999999999999999977654 44566765
No 187
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.38 E-value=0.00041 Score=67.41 Aligned_cols=46 Identities=22% Similarity=0.298 Sum_probs=36.6
Q ss_pred HhHhcCCCCeEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEEe
Q 003802 6 GYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLAN 51 (794)
Q Consensus 6 ~~l~~~~~~~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~~ 51 (794)
+++..+-+.-.++.|+|++|+|||++|.+++......-..++|++.
T Consensus 3 ~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~ 48 (209)
T TIGR02237 3 ELLGGGVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDT 48 (209)
T ss_pred hhhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 4455555667899999999999999999998866555567899873
No 188
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.35 E-value=0.0014 Score=62.78 Aligned_cols=28 Identities=36% Similarity=0.520 Sum_probs=23.4
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhhcc
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQ 42 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~~~~~ 42 (794)
..-+.++|..|+|||++++++.+.+...
T Consensus 52 annvLL~G~rGtGKSSlVkall~~y~~~ 79 (249)
T PF05673_consen 52 ANNVLLWGARGTGKSSLVKALLNEYADQ 79 (249)
T ss_pred CcceEEecCCCCCHHHHHHHHHHHHhhc
Confidence 4566789999999999999999876543
No 189
>PRK06526 transposase; Provisional
Probab=97.35 E-value=0.00041 Score=68.64 Aligned_cols=26 Identities=31% Similarity=0.157 Sum_probs=22.4
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhhc
Q 003802 16 RFIGICGMGGIGKTTLAKVLYNTLKD 41 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~~~~~ 41 (794)
+-+.|+|++|+|||+||..++.....
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~a~~ 124 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIRACQ 124 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHH
Confidence 46889999999999999999886543
No 190
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.35 E-value=0.0014 Score=71.05 Aligned_cols=153 Identities=14% Similarity=0.141 Sum_probs=77.5
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEEechhhhcccChHHHHHHHHHHHhccccccccchhhhHHHHHHH
Q 003802 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWR 93 (794)
Q Consensus 14 ~~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~ 93 (794)
..+-|.++|++|+|||.+|+.+++.+.-.| +-++ .+ . +.....+. +.....+.+...
T Consensus 258 ~pkGILL~GPpGTGKTllAkaiA~e~~~~~---~~l~----~~------~----l~~~~vGe------se~~l~~~f~~A 314 (489)
T CHL00195 258 TPRGLLLVGIQGTGKSLTAKAIANDWQLPL---LRLD----VG------K----LFGGIVGE------SESRMRQMIRIA 314 (489)
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCCCE---EEEE----hH------H----hcccccCh------HHHHHHHHHHHH
Confidence 456789999999999999999999865432 1121 00 0 11000000 001111112222
Q ss_pred hcCCeEEEEEcCCCChHH--------------HHHHhcCCCCCCCCCEEEEEeCChh-hhhhc----CcCcEEEcCCCCh
Q 003802 94 LCRKRVLVILDDVDQLEQ--------------LQALVGNHDWFGFGSRIIITSRDEH-VLKSH----GVTNTYKVRGLDY 154 (794)
Q Consensus 94 l~~~r~LlVlDd~~~~~~--------------~~~l~~~~~~~~~gs~IlvTtR~~~-v~~~~----~~~~~~~l~~L~~ 154 (794)
-...+++|++|+++..-. ...+...+.....+.-||.||.... +...+ .-+..+.++.-+.
T Consensus 315 ~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~ 394 (489)
T CHL00195 315 EALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSL 394 (489)
T ss_pred HhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCH
Confidence 235789999999864310 1222222222233444555665432 22221 2345677887788
Q ss_pred HhHHHHHHhhccCCCCCChhHHHHHHHHHHHhCCCc
Q 003802 155 VEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLP 190 (794)
Q Consensus 155 ~ea~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 190 (794)
++-.++|+.+........ ........+++.+.|.-
T Consensus 395 ~eR~~Il~~~l~~~~~~~-~~~~dl~~La~~T~GfS 429 (489)
T CHL00195 395 EEREKIFKIHLQKFRPKS-WKKYDIKKLSKLSNKFS 429 (489)
T ss_pred HHHHHHHHHHHhhcCCCc-ccccCHHHHHhhcCCCC
Confidence 888888887763321110 00112345666665543
No 191
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.35 E-value=0.00065 Score=66.45 Aligned_cols=49 Identities=20% Similarity=0.296 Sum_probs=37.7
Q ss_pred hhhhHhHhcCCCCeEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEE
Q 003802 2 EKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (794)
Q Consensus 2 ~~l~~~l~~~~~~~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~ 50 (794)
+.+.+++..+-+.-.++.|+|.+|+|||++|.+++......-..++|++
T Consensus 6 ~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~ 54 (218)
T cd01394 6 KGLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYID 54 (218)
T ss_pred hHHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 4566666655566789999999999999999999886644445667776
No 192
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.32 E-value=0.0039 Score=73.00 Aligned_cols=152 Identities=13% Similarity=0.066 Sum_probs=77.9
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhhccc------cceEEEEechhhhcccChHHHHHHHHHHHhccccccccchhhhHHH
Q 003802 16 RFIGICGMGGIGKTTLAKVLYNTLKDQF------EASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINL 89 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~~~~~~f------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 89 (794)
.-+.++|++|+||||+|+.+++++.... ...+|......+....... .+.++....
T Consensus 209 ~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~~~~------------------ge~e~~lk~ 270 (852)
T TIGR03345 209 NNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGASVK------------------GEFENRLKS 270 (852)
T ss_pred CceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhcccccc------------------hHHHHHHHH
Confidence 3456999999999999999999765432 1223322111111000000 111122222
Q ss_pred HHHHh--cCCeEEEEEcCCCChH---------HH-HHHhcCCCCCCCC-CEEEEEeCChhhhhh-------cCcCcEEEc
Q 003802 90 IRWRL--CRKRVLVILDDVDQLE---------QL-QALVGNHDWFGFG-SRIIITSRDEHVLKS-------HGVTNTYKV 149 (794)
Q Consensus 90 l~~~l--~~~r~LlVlDd~~~~~---------~~-~~l~~~~~~~~~g-s~IlvTtR~~~v~~~-------~~~~~~~~l 149 (794)
+.+.+ .+++.+|++|+++... +. .-+.+.+ ..| -++|-||...+.... ......+.+
T Consensus 271 ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l---~~G~l~~IgaTT~~e~~~~~~~d~AL~rRf~~i~v 347 (852)
T TIGR03345 271 VIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPAL---ARGELRTIAATTWAEYKKYFEKDPALTRRFQVVKV 347 (852)
T ss_pred HHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHh---hCCCeEEEEecCHHHHhhhhhccHHHHHhCeEEEe
Confidence 22222 2478999999985542 11 1233333 234 455556655433211 123358999
Q ss_pred CCCChHhHHHHHHhhccC-CC-CCChhHHHHHHHHHHHhCC
Q 003802 150 RGLDYVEALQLFHLKVSN-GK-QPTDYRVELSKYVVNYAGG 188 (794)
Q Consensus 150 ~~L~~~ea~~lf~~~~~~-~~-~~~~~~~~~~~~i~~~~~g 188 (794)
++++.++..++++...-. .. ..-....+....+++.+.+
T Consensus 348 ~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~r 388 (852)
T TIGR03345 348 EEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHR 388 (852)
T ss_pred CCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHccc
Confidence 999999999997543311 00 1111223445556665544
No 193
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.30 E-value=0.0014 Score=72.97 Aligned_cols=38 Identities=34% Similarity=0.472 Sum_probs=28.8
Q ss_pred hhhhHhHhcC---CCCeEEEEEEccCCCcHHHHHHHHHHHh
Q 003802 2 EKMNGYLEAG---LDDVRFIGICGMGGIGKTTLAKVLYNTL 39 (794)
Q Consensus 2 ~~l~~~l~~~---~~~~~vi~i~G~~GvGKTtLa~~v~~~~ 39 (794)
+++..++... ....+++.|+|++|+||||+++.++...
T Consensus 94 ~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l 134 (637)
T TIGR00602 94 EEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKEL 134 (637)
T ss_pred HHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3566666543 2234689999999999999999999854
No 194
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.29 E-value=0.0045 Score=68.61 Aligned_cols=156 Identities=17% Similarity=0.160 Sum_probs=80.4
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEEechhhhcccChHHHHHHHHHHHhccccccccchhhhHHHHHHHh
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWRL 94 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l 94 (794)
.+-+.++|++|+|||++|+.++....-.| +. ++. .+...... +. ........+....
T Consensus 88 ~~giLL~GppGtGKT~la~alA~~~~~~~-----~~----i~~----~~~~~~~~----g~------~~~~l~~~f~~a~ 144 (495)
T TIGR01241 88 PKGVLLVGPPGTGKTLLAKAVAGEAGVPF-----FS----ISG----SDFVEMFV----GV------GASRVRDLFEQAK 144 (495)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHcCCCe-----ee----ccH----HHHHHHHh----cc------cHHHHHHHHHHHH
Confidence 45588999999999999999998643222 21 110 01111000 00 0111122233333
Q ss_pred cCCeEEEEEcCCCChH----------------HHHHHhcCCC--CCCCCCEEEEEeCChh-hhhhc----CcCcEEEcCC
Q 003802 95 CRKRVLVILDDVDQLE----------------QLQALVGNHD--WFGFGSRIIITSRDEH-VLKSH----GVTNTYKVRG 151 (794)
Q Consensus 95 ~~~r~LlVlDd~~~~~----------------~~~~l~~~~~--~~~~gs~IlvTtR~~~-v~~~~----~~~~~~~l~~ 151 (794)
...+.+|+||+++... ....++..+. ....+..||.||.... +...+ .-...+.++.
T Consensus 145 ~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~ 224 (495)
T TIGR01241 145 KNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDL 224 (495)
T ss_pred hcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCC
Confidence 4567899999985531 1222322221 1123445555665432 21111 2345788888
Q ss_pred CChHhHHHHHHhhccCCCCCChhHHHHHHHHHHHhCCCc-hHHHHH
Q 003802 152 LDYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLP-LAIEVL 196 (794)
Q Consensus 152 L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-lai~~~ 196 (794)
.+.++-.++++.......... ......+++.+.|.- -.+..+
T Consensus 225 Pd~~~R~~il~~~l~~~~~~~---~~~l~~la~~t~G~sgadl~~l 267 (495)
T TIGR01241 225 PDIKGREEILKVHAKNKKLAP---DVDLKAVARRTPGFSGADLANL 267 (495)
T ss_pred CCHHHHHHHHHHHHhcCCCCc---chhHHHHHHhCCCCCHHHHHHH
Confidence 888888888887763222111 122447777777643 334433
No 195
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.28 E-value=1.7e-05 Score=67.02 Aligned_cols=62 Identities=23% Similarity=0.210 Sum_probs=26.8
Q ss_pred ccccccccccccccccccccCCCCCccEEEecCCCCCCCCCccccCCCCCcEEEccCccCcccC
Q 003802 471 RLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIP 534 (794)
Q Consensus 471 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~ 534 (794)
.++.|++++|. +..+|..+..++.|+.|+++.|.+.. .|..+..+.+|-.|+..+|.+..+|
T Consensus 78 t~t~lNl~~ne-isdvPeE~Aam~aLr~lNl~~N~l~~-~p~vi~~L~~l~~Lds~~na~~eid 139 (177)
T KOG4579|consen 78 TATTLNLANNE-ISDVPEELAAMPALRSLNLRFNPLNA-EPRVIAPLIKLDMLDSPENARAEID 139 (177)
T ss_pred hhhhhhcchhh-hhhchHHHhhhHHhhhcccccCcccc-chHHHHHHHhHHHhcCCCCccccCc
Confidence 33444444433 23334444444444444444443332 2333334455555555555544444
No 196
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.23 E-value=0.0036 Score=72.74 Aligned_cols=129 Identities=14% Similarity=0.134 Sum_probs=70.0
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhhcc-----c-cceEEEEechhhhcccChHHHHHHHHHHHhccccccccchhhhHHH
Q 003802 16 RFIGICGMGGIGKTTLAKVLYNTLKDQ-----F-EASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINL 89 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~~~~~~-----f-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 89 (794)
.-+.++|++|+|||++|+.+++++.+. + ...+|... +..+.... ....+.++....
T Consensus 204 ~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~---------~~~l~a~~---------~~~g~~e~~l~~ 265 (731)
T TIGR02639 204 NNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLD---------MGSLLAGT---------KYRGDFEERLKA 265 (731)
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEec---------HHHHhhhc---------cccchHHHHHHH
Confidence 345699999999999999999976432 1 23344321 11111000 000122233333
Q ss_pred HHHHh-cCCeEEEEEcCCCChH-----------HHHHHhcCCCCCCCCC-EEEEEeCChhhhhh-------cCcCcEEEc
Q 003802 90 IRWRL-CRKRVLVILDDVDQLE-----------QLQALVGNHDWFGFGS-RIIITSRDEHVLKS-------HGVTNTYKV 149 (794)
Q Consensus 90 l~~~l-~~~r~LlVlDd~~~~~-----------~~~~l~~~~~~~~~gs-~IlvTtR~~~v~~~-------~~~~~~~~l 149 (794)
+.+.+ +.++.+|++|+++... .-+-+.+.+. .|. ++|-+|...+.... ......+++
T Consensus 266 i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~---~g~i~~IgaTt~~e~~~~~~~d~al~rRf~~i~v 342 (731)
T TIGR02639 266 VVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALS---SGKLRCIGSTTYEEYKNHFEKDRALSRRFQKIDV 342 (731)
T ss_pred HHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHh---CCCeEEEEecCHHHHHHHhhhhHHHHHhCceEEe
Confidence 33333 2467899999986331 1233334332 333 44544443322111 122347899
Q ss_pred CCCChHhHHHHHHhhc
Q 003802 150 RGLDYVEALQLFHLKV 165 (794)
Q Consensus 150 ~~L~~~ea~~lf~~~~ 165 (794)
+..+.++..++++...
T Consensus 343 ~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 343 GEPSIEETVKILKGLK 358 (731)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999998654
No 197
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.23 E-value=1.9e-05 Score=66.76 Aligned_cols=74 Identities=18% Similarity=0.210 Sum_probs=47.4
Q ss_pred eeecCCCCCCCCCC--CCCCceEEEcCCCCcccccccccccccCceeccCCCcCccCCCCCCCCCCCCEEeccccc
Q 003802 384 KWHEYPFNSLPVSF--RPEKLFKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCT 457 (794)
Q Consensus 384 ~~~~~~~~~l~~~~--~~~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~n~~~~~~~~~~~l~~L~~L~l~~~~ 457 (794)
++.+|.++++|..+ .++.+++|++++|.|+.+|..+..++.|+.|+++.|.+...+..+..+.+|-.|+..+|.
T Consensus 59 ~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na 134 (177)
T KOG4579|consen 59 SLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPENA 134 (177)
T ss_pred ecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCCCc
Confidence 33344444555444 445677777777777777777777777777777777666555555556666666666654
No 198
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.22 E-value=0.0041 Score=62.45 Aligned_cols=25 Identities=32% Similarity=0.315 Sum_probs=21.2
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhh
Q 003802 16 RFIGICGMGGIGKTTLAKVLYNTLK 40 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~~~~ 40 (794)
+-|.|.|++|+|||++|+.++....
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~~lg 46 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVARKRD 46 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 3566999999999999999998553
No 199
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.19 E-value=0.00092 Score=66.29 Aligned_cols=37 Identities=27% Similarity=0.257 Sum_probs=28.6
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEE
Q 003802 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (794)
Q Consensus 14 ~~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~ 50 (794)
+..-+.++|++|+|||.||.++++++...--.+.|+.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~ 140 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFIT 140 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEE
Confidence 4457889999999999999999998774334455554
No 200
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.19 E-value=0.0021 Score=68.65 Aligned_cols=128 Identities=18% Similarity=0.218 Sum_probs=70.2
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEEechhhhcccChHHHHHHHHHHHhccccccccchhhhHHHHHHHh
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWRL 94 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l 94 (794)
.+-|.|+|++|+|||++|+.+++.....| +.+... .+ ....... ........+....
T Consensus 217 p~gVLL~GPPGTGKT~LAraIA~el~~~f---i~V~~s-------eL---~~k~~Ge----------~~~~vr~lF~~A~ 273 (438)
T PTZ00361 217 PKGVILYGPPGTGKTLLAKAVANETSATF---LRVVGS-------EL---IQKYLGD----------GPKLVRELFRVAE 273 (438)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCCCE---EEEecc-------hh---hhhhcch----------HHHHHHHHHHHHH
Confidence 45688999999999999999999776544 222110 11 1111000 0001111122222
Q ss_pred cCCeEEEEEcCCCChH----------------HHHHHhcCCC--CCCCCCEEEEEeCChhhhhh-c----CcCcEEEcCC
Q 003802 95 CRKRVLVILDDVDQLE----------------QLQALVGNHD--WFGFGSRIIITSRDEHVLKS-H----GVTNTYKVRG 151 (794)
Q Consensus 95 ~~~r~LlVlDd~~~~~----------------~~~~l~~~~~--~~~~gs~IlvTtR~~~v~~~-~----~~~~~~~l~~ 151 (794)
...+.+++||+++... .+..++..+. ....+.+||.||........ + .....+++..
T Consensus 274 ~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~ 353 (438)
T PTZ00361 274 ENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPN 353 (438)
T ss_pred hCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCC
Confidence 3567899999874321 0112222111 11235677777775433222 1 1245788999
Q ss_pred CChHhHHHHHHhhc
Q 003802 152 LDYVEALQLFHLKV 165 (794)
Q Consensus 152 L~~~ea~~lf~~~~ 165 (794)
.+.++..++|..+.
T Consensus 354 Pd~~~R~~Il~~~~ 367 (438)
T PTZ00361 354 PDEKTKRRIFEIHT 367 (438)
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999998765
No 201
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.15 E-value=0.003 Score=62.17 Aligned_cols=50 Identities=22% Similarity=0.230 Sum_probs=38.1
Q ss_pred hhhhHhHhcCCCCeEEEEEEccCCCcHHHHHHHHHHHhhccc------cceEEEEe
Q 003802 2 EKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQF------EASSFLAN 51 (794)
Q Consensus 2 ~~l~~~l~~~~~~~~vi~i~G~~GvGKTtLa~~v~~~~~~~f------~~~~~~~~ 51 (794)
+.+.+++..+-+.-.++.|+|++|+|||++|.+++....... ..++|++.
T Consensus 6 ~~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~ 61 (226)
T cd01393 6 KALDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDT 61 (226)
T ss_pred HHHHHHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEec
Confidence 456667766656678999999999999999999987554333 56788873
No 202
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.15 E-value=0.00042 Score=64.72 Aligned_cols=36 Identities=25% Similarity=0.212 Sum_probs=26.0
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEE
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~ 50 (794)
..-+.|+|+.|+|||.||..+++.+..+=-.+.|+.
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~ 82 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFIT 82 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEee
Confidence 456899999999999999999986544333456665
No 203
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.14 E-value=0.006 Score=56.88 Aligned_cols=29 Identities=31% Similarity=0.252 Sum_probs=25.1
Q ss_pred CCCeEEEEEEccCCCcHHHHHHHHHHHhh
Q 003802 12 LDDVRFIGICGMGGIGKTTLAKVLYNTLK 40 (794)
Q Consensus 12 ~~~~~vi~i~G~~GvGKTtLa~~v~~~~~ 40 (794)
+++++-+.|.||+|+||||-+..+++..-
T Consensus 45 ~gnmP~liisGpPG~GKTTsi~~LAr~LL 73 (333)
T KOG0991|consen 45 EGNMPNLIISGPPGTGKTTSILCLARELL 73 (333)
T ss_pred cCCCCceEeeCCCCCchhhHHHHHHHHHh
Confidence 45688899999999999999999998643
No 204
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.13 E-value=0.0034 Score=61.59 Aligned_cols=80 Identities=26% Similarity=0.324 Sum_probs=49.1
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHH----hhccccceEEEEechhhhcccChHHHHHHHHHHHhccccccccchhhhHHHH
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNT----LKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLI 90 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~----~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l 90 (794)
.|+|.++||+|.|||+|.+++++. ..++|.....+. ++ ...+....+.+ . ..-.....+.|
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liE----in----shsLFSKWFsE----S---gKlV~kmF~kI 241 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIE----IN----SHSLFSKWFSE----S---GKLVAKMFQKI 241 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEE----Ee----hhHHHHHHHhh----h---hhHHHHHHHHH
Confidence 599999999999999999999994 345666665554 11 11222222222 1 11233445666
Q ss_pred HHHhcCCeE--EEEEcCCCCh
Q 003802 91 RWRLCRKRV--LVILDDVDQL 109 (794)
Q Consensus 91 ~~~l~~~r~--LlVlDd~~~~ 109 (794)
++.++++.. .+.+|.|+..
T Consensus 242 ~ELv~d~~~lVfvLIDEVESL 262 (423)
T KOG0744|consen 242 QELVEDRGNLVFVLIDEVESL 262 (423)
T ss_pred HHHHhCCCcEEEEEeHHHHHH
Confidence 777766654 4457887544
No 205
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.12 E-value=0.0012 Score=62.72 Aligned_cols=36 Identities=28% Similarity=0.365 Sum_probs=27.5
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEE
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~ 50 (794)
++||.++|+.|+||||.+.+++.+.+.+-..+..++
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis 36 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALIS 36 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeec
Confidence 479999999999999999999987665533445544
No 206
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.11 E-value=0.002 Score=63.89 Aligned_cols=50 Identities=22% Similarity=0.298 Sum_probs=36.7
Q ss_pred hhhhHhHhcCCCCeEEEEEEccCCCcHHHHHHHHHHHhhcc------ccceEEEEe
Q 003802 2 EKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ------FEASSFLAN 51 (794)
Q Consensus 2 ~~l~~~l~~~~~~~~vi~i~G~~GvGKTtLa~~v~~~~~~~------f~~~~~~~~ 51 (794)
..+.+++..+-+.-.++.|+|++|+|||++|.+++...... -..++|++.
T Consensus 6 ~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~ 61 (235)
T cd01123 6 KALDELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDT 61 (235)
T ss_pred hhhHhhccCCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeC
Confidence 34556666555667899999999999999999997543211 367888873
No 207
>PRK10536 hypothetical protein; Provisional
Probab=97.09 E-value=0.0022 Score=62.33 Aligned_cols=117 Identities=14% Similarity=0.113 Sum_probs=59.5
Q ss_pred EEEEEEccCCCcHHHHHHHHHHH-h-hccccceEEEEechhhh-----cccChHHHHHHHHHHHhccccccccchhhhHH
Q 003802 16 RFIGICGMGGIGKTTLAKVLYNT-L-KDQFEASSFLANVREVS-----VTRGLVPLQEQLLSEVLMERDLIIWDVHKGIN 88 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~~-~-~~~f~~~~~~~~~~~~~-----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 88 (794)
.+|.+.|++|+|||+||..++.+ + .+.|+.++...-.-... -+-+..+...-.+..+......- ........
T Consensus 75 ~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~~~eK~~p~~~pi~D~L~~~-~~~~~~~~ 153 (262)
T PRK10536 75 QLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGDIAEKFAPYFRPVYDVLVRR-LGASFMQY 153 (262)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCCHHHHHHHHHHHHHHHHHHH-hChHHHHH
Confidence 49999999999999999999873 4 34455443332110000 01122222221111111100000 00000000
Q ss_pred HH-----------HHHhcCCeE---EEEEcCCCChH--HHHHHhcCCCCCCCCCEEEEEeCChh
Q 003802 89 LI-----------RWRLCRKRV---LVILDDVDQLE--QLQALVGNHDWFGFGSRIIITSRDEH 136 (794)
Q Consensus 89 ~l-----------~~~l~~~r~---LlVlDd~~~~~--~~~~l~~~~~~~~~gs~IlvTtR~~~ 136 (794)
.+ ..+++++.+ ++|+|++.+.. +...+.... +.+|+||+|--..+
T Consensus 154 ~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~~~~k~~ltR~---g~~sk~v~~GD~~Q 214 (262)
T PRK10536 154 CLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKMFLTRL---GENVTVIVNGDITQ 214 (262)
T ss_pred HHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCHHHHHHHHhhc---CCCCEEEEeCChhh
Confidence 11 124566654 99999997764 355555443 58999999876543
No 208
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.09 E-value=0.0029 Score=64.52 Aligned_cols=98 Identities=20% Similarity=0.221 Sum_probs=57.0
Q ss_pred hhhHhHhcCCCCeEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEEechhhhcccChHHHHHHHHHHHhccccccccc
Q 003802 3 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWD 82 (794)
Q Consensus 3 ~l~~~l~~~~~~~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 82 (794)
++.+.|--+--.-.+|.|-|.+|+|||||..+++.++.++- .+.||+. .....++ +--+..+....+.-..-
T Consensus 81 EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsG------EES~~Qi-klRA~RL~~~~~~l~l~ 152 (456)
T COG1066 81 ELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSG------EESLQQI-KLRADRLGLPTNNLYLL 152 (456)
T ss_pred HHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEeC------CcCHHHH-HHHHHHhCCCccceEEe
Confidence 33344433323347999999999999999999999887766 7888762 2222222 22223323222221111
Q ss_pred hhhhHHHHHHHhc-CCeEEEEEcCCCC
Q 003802 83 VHKGINLIRWRLC-RKRVLVILDDVDQ 108 (794)
Q Consensus 83 ~~~~~~~l~~~l~-~~r~LlVlDd~~~ 108 (794)
.+...+.|.+.+. .++-++|+|-+..
T Consensus 153 aEt~~e~I~~~l~~~~p~lvVIDSIQT 179 (456)
T COG1066 153 AETNLEDIIAELEQEKPDLVVIDSIQT 179 (456)
T ss_pred hhcCHHHHHHHHHhcCCCEEEEeccce
Confidence 2223344444443 5788999998744
No 209
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.08 E-value=0.0027 Score=65.30 Aligned_cols=102 Identities=18% Similarity=0.071 Sum_probs=58.0
Q ss_pred hhHhHhcCCCCeEEEEEEccCCCcHHHHHHHHHHHhhccc-cce-EEEEechhhhcccChHHHHHHHHHHHhcccccccc
Q 003802 4 MNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQF-EAS-SFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIW 81 (794)
Q Consensus 4 l~~~l~~~~~~~~vi~i~G~~GvGKTtLa~~v~~~~~~~f-~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 81 (794)
+.+.+..-..+ .-+.|+|++|+|||||++++++.+.... +.. +|+.. -.....+.++.+.+...+.....+...
T Consensus 123 vID~l~PiGkG-QR~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~lI---gER~~EV~df~~~i~~~Vvast~de~~ 198 (380)
T PRK12608 123 VVDLVAPIGKG-QRGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLI---DERPEEVTDMRRSVKGEVYASTFDRPP 198 (380)
T ss_pred hhhheeecCCC-ceEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEEe---cCCCCCHHHHHHHHhhhEEeecCCCCH
Confidence 44444442222 3458999999999999999999775544 332 34332 233456667777776654433211111
Q ss_pred c----hhhhHHHHHHHh--cCCeEEEEEcCCCCh
Q 003802 82 D----VHKGINLIRWRL--CRKRVLVILDDVDQL 109 (794)
Q Consensus 82 ~----~~~~~~~l~~~l--~~~r~LlVlDd~~~~ 109 (794)
. .......+.+++ ++++.+||+|++...
T Consensus 199 ~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr~ 232 (380)
T PRK12608 199 DEHIRVAELVLERAKRLVEQGKDVVILLDSLTRL 232 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHHH
Confidence 1 111111222222 479999999998544
No 210
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.08 E-value=0.0053 Score=56.44 Aligned_cols=120 Identities=16% Similarity=0.160 Sum_probs=60.6
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhhc--------------------cccceEEEEechhhhcccChHHHHHHHHHHHhc
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNTLKD--------------------QFEASSFLANVREVSVTRGLVPLQEQLLSEVLM 74 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~~~~--------------------~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 74 (794)
.+.+.++|+.|+||+++|..+++.+-. ..+...|+... .......+ +..+++...+..
T Consensus 19 ~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~-~~~~~i~i-~~ir~i~~~~~~ 96 (162)
T PF13177_consen 19 PHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPD-KKKKSIKI-DQIREIIEFLSL 96 (162)
T ss_dssp -SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETT-TSSSSBSH-HHHHHHHHHCTS
T ss_pred ceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecc-cccchhhH-HHHHHHHHHHHH
Confidence 567899999999999999999985421 12333333200 00000111 111122222110
Q ss_pred cccccccchhhhHHHHHHHhcCCeEEEEEcCCCChH--HHHHHhcCCCCCCCCCEEEEEeCChh-hh-hhcCcCcEEEcC
Q 003802 75 ERDLIIWDVHKGINLIRWRLCRKRVLVILDDVDQLE--QLQALVGNHDWFGFGSRIIITSRDEH-VL-KSHGVTNTYKVR 150 (794)
Q Consensus 75 ~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDd~~~~~--~~~~l~~~~~~~~~gs~IlvTtR~~~-v~-~~~~~~~~~~l~ 150 (794)
. -..+++=++|+|+++.+. ...+++..+.....++++|++|++.. +. ...+....+.+.
T Consensus 97 ~-----------------~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~~il~TI~SRc~~i~~~ 159 (162)
T PF13177_consen 97 S-----------------PSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPSKILPTIRSRCQVIRFR 159 (162)
T ss_dssp S------------------TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GGGS-HHHHTTSEEEEE-
T ss_pred H-----------------HhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChHHChHHHHhhceEEecC
Confidence 0 012456788999998764 36666655544456888888887653 22 223334466666
Q ss_pred CCC
Q 003802 151 GLD 153 (794)
Q Consensus 151 ~L~ 153 (794)
+++
T Consensus 160 ~ls 162 (162)
T PF13177_consen 160 PLS 162 (162)
T ss_dssp ---
T ss_pred CCC
Confidence 553
No 211
>PRK08118 topology modulation protein; Reviewed
Probab=97.06 E-value=0.00047 Score=63.78 Aligned_cols=33 Identities=36% Similarity=0.482 Sum_probs=26.2
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhhc---cccceEE
Q 003802 16 RFIGICGMGGIGKTTLAKVLYNTLKD---QFEASSF 48 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~~~~~---~f~~~~~ 48 (794)
+.|.|+|++|+||||+|+++++...- +||...|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 35889999999999999999997542 3555555
No 212
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.04 E-value=0.0033 Score=65.86 Aligned_cols=49 Identities=29% Similarity=0.310 Sum_probs=36.7
Q ss_pred hhhhHhHhcCCCCeEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEE
Q 003802 2 EKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (794)
Q Consensus 2 ~~l~~~l~~~~~~~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~ 50 (794)
+++.+.|..+-..-.++.|.|.+|+|||||+.+++......-..++|++
T Consensus 69 ~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs 117 (372)
T cd01121 69 EELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVS 117 (372)
T ss_pred HHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 4555656544444579999999999999999999986655445677776
No 213
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.03 E-value=0.003 Score=58.50 Aligned_cols=34 Identities=29% Similarity=0.303 Sum_probs=27.4
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhhccccceEEEE
Q 003802 17 FIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (794)
Q Consensus 17 vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~ 50 (794)
++.|+|++|+|||+++..++......-..++|+.
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~ 34 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVD 34 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEE
Confidence 4689999999999999999987655445566765
No 214
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.03 E-value=0.0074 Score=71.06 Aligned_cols=140 Identities=14% Similarity=0.089 Sum_probs=72.5
Q ss_pred hhhHhHhcCCCCeEEEEEEccCCCcHHHHHHHHHHHhhcc-----c-cceEEEEechhhhcccChHHHHHHHHHHHhccc
Q 003802 3 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ-----F-EASSFLANVREVSVTRGLVPLQEQLLSEVLMER 76 (794)
Q Consensus 3 ~l~~~l~~~~~~~~vi~i~G~~GvGKTtLa~~v~~~~~~~-----f-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 76 (794)
++.++|.... ..-+.++|++|+|||++|+.++.++... . ...+|...... ++. +.
T Consensus 190 ~~~~~L~r~~--~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~-------------l~a---g~- 250 (821)
T CHL00095 190 RVIQILGRRT--KNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGL-------------LLA---GT- 250 (821)
T ss_pred HHHHHHcccc--cCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHH-------------Hhc---cC-
Confidence 3444444432 2345699999999999999999976432 1 23344321111 110 00
Q ss_pred cccccchhhhHHHHHHHh-cCCeEEEEEcCCCChH---------HHH-HHhcCCCCCCCCCEEEEEeCChhhhhh-----
Q 003802 77 DLIIWDVHKGINLIRWRL-CRKRVLVILDDVDQLE---------QLQ-ALVGNHDWFGFGSRIIITSRDEHVLKS----- 140 (794)
Q Consensus 77 ~~~~~~~~~~~~~l~~~l-~~~r~LlVlDd~~~~~---------~~~-~l~~~~~~~~~gs~IlvTtR~~~v~~~----- 140 (794)
....+.++.+..+.+.+ +.++.+|++|+++... +.. -+.+.+. ...-++|-+|...+....
T Consensus 251 -~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~--rg~l~~IgaTt~~ey~~~ie~D~ 327 (821)
T CHL00095 251 -KYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALA--RGELQCIGATTLDEYRKHIEKDP 327 (821)
T ss_pred -CCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHh--CCCcEEEEeCCHHHHHHHHhcCH
Confidence 00112223333333333 3468999999985332 122 2222222 122455656665543221
Q ss_pred --cCcCcEEEcCCCChHhHHHHHHhh
Q 003802 141 --HGVTNTYKVRGLDYVEALQLFHLK 164 (794)
Q Consensus 141 --~~~~~~~~l~~L~~~ea~~lf~~~ 164 (794)
......+++...+.++...+++..
T Consensus 328 aL~rRf~~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 328 ALERRFQPVYVGEPSVEETIEILFGL 353 (821)
T ss_pred HHHhcceEEecCCCCHHHHHHHHHHH
Confidence 122346788888888888887653
No 215
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.02 E-value=0.002 Score=65.73 Aligned_cols=99 Identities=18% Similarity=0.215 Sum_probs=55.2
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEEechhhhcccChHHHHHHHHHHHhccccccccchhhhHHHHHHHh
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWRL 94 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l 94 (794)
.+-+.|+|+.|+|||.||..+++.+...-..+.|+. +. ++..++....... + .....+.+
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~----~~------~l~~~lk~~~~~~------~----~~~~l~~l 215 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLH----FP------EFIRELKNSISDG------S----VKEKIDAV 215 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEE----HH------HHHHHHHHHHhcC------c----HHHHHHHh
Confidence 457889999999999999999997654434455655 21 2333333331100 1 11222223
Q ss_pred cCCeEEEEEcCCC--ChHHHHH--HhcCC-CC-CCCCCEEEEEeCC
Q 003802 95 CRKRVLVILDDVD--QLEQLQA--LVGNH-DW-FGFGSRIIITSRD 134 (794)
Q Consensus 95 ~~~r~LlVlDd~~--~~~~~~~--l~~~~-~~-~~~gs~IlvTtR~ 134 (794)
.+-=||||||+. ...+|.. +.... .. ...+-.+++||..
T Consensus 216 -~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 216 -KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred -cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 245689999983 3344532 32222 11 1234568888874
No 216
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.01 E-value=0.0077 Score=60.29 Aligned_cols=149 Identities=14% Similarity=0.168 Sum_probs=80.2
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEEechhhhcccChHHHHHHHHHHHhccccccccchhhhHHHHHHH
Q 003802 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWR 93 (794)
Q Consensus 14 ~~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~ 93 (794)
.++=|.++|++|.|||-||++|+++....| +-+. . .++.+..+.+ ...+++.+.+.
T Consensus 184 PPKGVLLYGPPGTGKTLLAkAVA~~T~AtF---Irvv------g----SElVqKYiGE-----------GaRlVRelF~l 239 (406)
T COG1222 184 PPKGVLLYGPPGTGKTLLAKAVANQTDATF---IRVV------G----SELVQKYIGE-----------GARLVRELFEL 239 (406)
T ss_pred CCCceEeeCCCCCcHHHHHHHHHhccCceE---EEec------c----HHHHHHHhcc-----------chHHHHHHHHH
Confidence 456788999999999999999999866544 2221 0 1222333321 12344555555
Q ss_pred hcC-CeEEEEEcCCCChH-------------H---HHHHhcCCCCC--CCCCEEEEEeCChhhhh-----hcCcCcEEEc
Q 003802 94 LCR-KRVLVILDDVDQLE-------------Q---LQALVGNHDWF--GFGSRIIITSRDEHVLK-----SHGVTNTYKV 149 (794)
Q Consensus 94 l~~-~r~LlVlDd~~~~~-------------~---~~~l~~~~~~~--~~gs~IlvTtR~~~v~~-----~~~~~~~~~l 149 (794)
.+. .+..|++|.++... . +-+++..+... ....|||.+|....+.. .-.-+..+++
T Consensus 240 ArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEf 319 (406)
T COG1222 240 AREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDILDPALLRPGRFDRKIEF 319 (406)
T ss_pred HhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCccccChhhcCCCcccceeec
Confidence 554 58999999885432 1 22333333211 23458887776543322 1123556777
Q ss_pred CCCChHhHHHHHHhhccCC-CCCChhHHHHHHHHHHHhCCCc
Q 003802 150 RGLDYVEALQLFHLKVSNG-KQPTDYRVELSKYVVNYAGGLP 190 (794)
Q Consensus 150 ~~L~~~ea~~lf~~~~~~~-~~~~~~~~~~~~~i~~~~~g~P 190 (794)
+.=+.+.-.++|+-++..= -...-+ .+.+++.+.|.-
T Consensus 320 plPd~~gR~~Il~IHtrkM~l~~dvd----~e~la~~~~g~s 357 (406)
T COG1222 320 PLPDEEGRAEILKIHTRKMNLADDVD----LELLARLTEGFS 357 (406)
T ss_pred CCCCHHHHHHHHHHHhhhccCccCcC----HHHHHHhcCCCc
Confidence 7434444445665554110 011111 345666776655
No 217
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=96.99 E-value=0.0013 Score=69.13 Aligned_cols=35 Identities=26% Similarity=0.290 Sum_probs=28.6
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhhc--cccceEEEE
Q 003802 16 RFIGICGMGGIGKTTLAKVLYNTLKD--QFEASSFLA 50 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~~~~~--~f~~~~~~~ 50 (794)
+.|.++|++|+|||++|+++++.... .++.+.|+.
T Consensus 195 ~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~Vt 231 (459)
T PRK11331 195 KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQ 231 (459)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEe
Confidence 57888999999999999999997643 456667776
No 218
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.97 E-value=0.0047 Score=58.06 Aligned_cols=93 Identities=18% Similarity=0.235 Sum_probs=55.9
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEEechhhhcccChHHHHHHHHHHHhccccccccchhhhHHHHHHHh
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWRL 94 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l 94 (794)
..-|.+||.-|+|||.|++++.+.+.+..-.-+=|+ ..++. .+-.+ ...++ .
T Consensus 85 ANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~-------k~dl~-~Lp~l------------------~~~Lr--~ 136 (287)
T COG2607 85 ANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVD-------KEDLA-TLPDL------------------VELLR--A 136 (287)
T ss_pred ccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEc-------HHHHh-hHHHH------------------HHHHh--c
Confidence 346779999999999999999998877665533332 11111 11111 11221 1
Q ss_pred cCCeEEEEEcCC---CChHHHHHHhcCCC---CCCCCCEEEEEeCCh
Q 003802 95 CRKRVLVILDDV---DQLEQLQALVGNHD---WFGFGSRIIITSRDE 135 (794)
Q Consensus 95 ~~~r~LlVlDd~---~~~~~~~~l~~~~~---~~~~gs~IlvTtR~~ 135 (794)
..+||.|+.||. ...+....+...+. ...|...++..|.++
T Consensus 137 ~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNR 183 (287)
T COG2607 137 RPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSNR 183 (287)
T ss_pred CCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecCC
Confidence 368999999998 23344666665553 223455566666554
No 219
>PRK04296 thymidine kinase; Provisional
Probab=96.97 E-value=0.0014 Score=62.11 Aligned_cols=111 Identities=18% Similarity=0.106 Sum_probs=60.3
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhhccccceEEEEechhhhcccChHHHHHHHHHHHhccccc-cccchhhhHHHHHHHh
Q 003802 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDL-IIWDVHKGINLIRWRL 94 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~l~~~l 94 (794)
.++.|+|+.|.||||+|..++.+...+...+.++. ... +-+.....+..++...... .....++..+.+.+ .
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k--~~~----d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~ 75 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFK--PAI----DDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-E 75 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEe--ccc----cccccCCcEecCCCCcccceEeCChHHHHHHHHh-h
Confidence 47889999999999999999987755544444432 000 1111112233332211111 11223334444444 2
Q ss_pred cCCeEEEEEcCCCCh--HHHHHHhcCCCCCCCCCEEEEEeCCh
Q 003802 95 CRKRVLVILDDVDQL--EQLQALVGNHDWFGFGSRIIITSRDE 135 (794)
Q Consensus 95 ~~~r~LlVlDd~~~~--~~~~~l~~~~~~~~~gs~IlvTtR~~ 135 (794)
.++.-+||+|.+.-. ++..++...+. ..|..|++|.+..
T Consensus 76 ~~~~dvviIDEaq~l~~~~v~~l~~~l~--~~g~~vi~tgl~~ 116 (190)
T PRK04296 76 GEKIDCVLIDEAQFLDKEQVVQLAEVLD--DLGIPVICYGLDT 116 (190)
T ss_pred CCCCCEEEEEccccCCHHHHHHHHHHHH--HcCCeEEEEecCc
Confidence 334458999998653 32333333322 4588899999974
No 220
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.96 E-value=0.00073 Score=59.01 Aligned_cols=23 Identities=52% Similarity=0.567 Sum_probs=21.6
Q ss_pred EEEEEccCCCcHHHHHHHHHHHh
Q 003802 17 FIGICGMGGIGKTTLAKVLYNTL 39 (794)
Q Consensus 17 vi~i~G~~GvGKTtLa~~v~~~~ 39 (794)
||.|.|++|+||||+|++++++.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999976
No 221
>PHA00729 NTP-binding motif containing protein
Probab=96.95 E-value=0.0025 Score=60.90 Aligned_cols=27 Identities=30% Similarity=0.191 Sum_probs=23.4
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHHHhh
Q 003802 14 DVRFIGICGMGGIGKTTLAKVLYNTLK 40 (794)
Q Consensus 14 ~~~vi~i~G~~GvGKTtLa~~v~~~~~ 40 (794)
+...|.|+|.+|+|||+||..+++++.
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 445788999999999999999999753
No 222
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.94 E-value=0.0047 Score=58.04 Aligned_cols=36 Identities=42% Similarity=0.600 Sum_probs=31.3
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEE
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~ 50 (794)
..+|.+.|+.|+||||+|+.++......+...++++
T Consensus 7 ~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~ 42 (176)
T PRK05541 7 GYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLD 42 (176)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 469999999999999999999998877777777764
No 223
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.93 E-value=0.0077 Score=59.57 Aligned_cols=49 Identities=18% Similarity=0.273 Sum_probs=37.6
Q ss_pred hhhhHhHhcCCCCeEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEE
Q 003802 2 EKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (794)
Q Consensus 2 ~~l~~~l~~~~~~~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~ 50 (794)
+.+.+++..+-+.-.++.|.|++|+|||++|.++.......-..++|+.
T Consensus 8 ~~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs 56 (237)
T TIGR03877 8 PGMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVA 56 (237)
T ss_pred HhHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEE
Confidence 4566667666666789999999999999999998764334456677876
No 224
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.92 E-value=0.0063 Score=55.77 Aligned_cols=30 Identities=37% Similarity=0.456 Sum_probs=24.7
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhhccccc
Q 003802 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEA 45 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~ 45 (794)
+.|.++|.+|+||||+|+++++..++.-..
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i~~ 31 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEIWR 31 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHhhhh
Confidence 467899999999999999999976655433
No 225
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.91 E-value=0.0064 Score=60.13 Aligned_cols=49 Identities=22% Similarity=0.235 Sum_probs=36.2
Q ss_pred hhhhHhHhcCCCCeEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEE
Q 003802 2 EKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (794)
Q Consensus 2 ~~l~~~l~~~~~~~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~ 50 (794)
+.+.++|..+-+.-.++.|+|.+|+|||++|.+++.....+=..+.|+.
T Consensus 12 ~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~ 60 (234)
T PRK06067 12 EELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVIT 60 (234)
T ss_pred HHHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEE
Confidence 3455666656566789999999999999999999764323345667776
No 226
>PRK04132 replication factor C small subunit; Provisional
Probab=96.90 E-value=0.012 Score=67.74 Aligned_cols=154 Identities=18% Similarity=0.157 Sum_probs=91.5
Q ss_pred Ec--cCCCcHHHHHHHHHHHh-hccccc-eEEEEechhhhcccChHHHHHHHHHHHhccccccccchhhhHHHHHHHhcC
Q 003802 21 CG--MGGIGKTTLAKVLYNTL-KDQFEA-SSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWRLCR 96 (794)
Q Consensus 21 ~G--~~GvGKTtLa~~v~~~~-~~~f~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 96 (794)
.| |.|+||||+|..+++.. .+.++. ++-++ .+....+ +..+++++....... .-..
T Consensus 570 ~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElN----ASd~rgi-d~IR~iIk~~a~~~~---------------~~~~ 629 (846)
T PRK04132 570 GGNLPTVLHNTTAALALARELFGENWRHNFLELN----ASDERGI-NVIREKVKEFARTKP---------------IGGA 629 (846)
T ss_pred cCCCCCcccHHHHHHHHHHhhhcccccCeEEEEe----CCCcccH-HHHHHHHHHHHhcCC---------------cCCC
Confidence 47 88999999999999975 333322 33443 2222222 233444433211110 0012
Q ss_pred CeEEEEEcCCCChH--HHHHHhcCCCCCCCCCEEEEEeCC-hhhhhhc-CcCcEEEcCCCChHhHHHHHHhhccCCCCCC
Q 003802 97 KRVLVILDDVDQLE--QLQALVGNHDWFGFGSRIIITSRD-EHVLKSH-GVTNTYKVRGLDYVEALQLFHLKVSNGKQPT 172 (794)
Q Consensus 97 ~r~LlVlDd~~~~~--~~~~l~~~~~~~~~gs~IlvTtR~-~~v~~~~-~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~ 172 (794)
+.-++|+|+++... ...+++..+......+++|.++.+ ..+.... +....+++.++++++....+.+.+.... -
T Consensus 630 ~~KVvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Eg--i 707 (846)
T PRK04132 630 SFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEG--L 707 (846)
T ss_pred CCEEEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcC--C
Confidence 45799999998775 466666655543456666665554 3443332 3345899999999999988877653221 1
Q ss_pred hhHHHHHHHHHHHhCCCchHHHHH
Q 003802 173 DYRVELSKYVVNYAGGLPLAIEVL 196 (794)
Q Consensus 173 ~~~~~~~~~i~~~~~g~Plai~~~ 196 (794)
....+....|++.++|.+..+..+
T Consensus 708 ~i~~e~L~~Ia~~s~GDlR~AIn~ 731 (846)
T PRK04132 708 ELTEEGLQAILYIAEGDMRRAINI 731 (846)
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 122457889999999988555433
No 227
>PRK07667 uridine kinase; Provisional
Probab=96.90 E-value=0.0019 Score=61.46 Aligned_cols=41 Identities=22% Similarity=0.375 Sum_probs=34.6
Q ss_pred hhhhHhHhcCCCCeEEEEEEccCCCcHHHHHHHHHHHhhcc
Q 003802 2 EKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ 42 (794)
Q Consensus 2 ~~l~~~l~~~~~~~~vi~i~G~~GvGKTtLa~~v~~~~~~~ 42 (794)
+++.+.+....++..+|+|.|.+|+||||+|+.+...++..
T Consensus 4 ~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~~~ 44 (193)
T PRK07667 4 NELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENMKQE 44 (193)
T ss_pred HHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 56677777777777999999999999999999999976543
No 228
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.89 E-value=0.0012 Score=58.02 Aligned_cols=34 Identities=32% Similarity=0.513 Sum_probs=27.3
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhhcc-ccceEE
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQ-FEASSF 48 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~~~~~-f~~~~~ 48 (794)
.--|.|+|++|+||||+++++++.+++. |...-+
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf 39 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGF 39 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeE
Confidence 3468899999999999999999977655 655433
No 229
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.88 E-value=0.00057 Score=65.18 Aligned_cols=107 Identities=21% Similarity=0.173 Sum_probs=59.5
Q ss_pred CCCCCCEEecccccccccccccccCcccccccccccc--ccccccccccCCCCCccEEEecCCCCCC-CCCccccCCCCC
Q 003802 444 GVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDC--RNLVSFPKNVCLMKSLKILCLCGCLKLE-KLPQDLGEVECL 520 (794)
Q Consensus 444 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n--~~~~~~~~~~~~l~~L~~L~L~~~~~~~-~~~~~~~~l~~L 520 (794)
.+..|+.|.+.++..++. ..+-.|++|++|.++.| +..+.++.-...+++|++|++++|.+.. ..-..+..+.+|
T Consensus 41 ~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL 118 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENL 118 (260)
T ss_pred cccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcch
Confidence 344555555555444332 24555667777777776 4444444444555777777777776542 111224556667
Q ss_pred cEEEccCccCcccCc----ccccCCCCCEEEcCCCC
Q 003802 521 EELDVGGTAIRQIPP----SIVQLVNLKIFSLHGCK 552 (794)
Q Consensus 521 ~~L~l~~~~l~~l~~----~l~~l~~L~~L~l~~~~ 552 (794)
..|++.+|..+.+-. .+.-+++|++|+-....
T Consensus 119 ~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 119 KSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVD 154 (260)
T ss_pred hhhhcccCCccccccHHHHHHHHhhhhccccccccC
Confidence 777777776554321 23446677777655444
No 230
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.88 E-value=0.017 Score=62.35 Aligned_cols=95 Identities=13% Similarity=0.153 Sum_probs=64.2
Q ss_pred CCeEEEEEcCCCChH--HHHHHhcCCCCCCCCCEEEEEeCCh-hhh-hhcCcCcEEEcCCCChHhHHHHHHhhccCCCCC
Q 003802 96 RKRVLVILDDVDQLE--QLQALVGNHDWFGFGSRIIITSRDE-HVL-KSHGVTNTYKVRGLDYVEALQLFHLKVSNGKQP 171 (794)
Q Consensus 96 ~~r~LlVlDd~~~~~--~~~~l~~~~~~~~~gs~IlvTtR~~-~v~-~~~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~ 171 (794)
+|-=++|+|+|.... .|.+++..+.....+.+.|+.|++. .+. ...+....+.+..++.++-...+...+..+.
T Consensus 118 ~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~-- 195 (515)
T COG2812 118 GRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNTILSRCQRFDFKRLDLEEIAKHLAAILDKEG-- 195 (515)
T ss_pred ccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCchhhhhccccccccCCCHHHHHHHHHHHHHhcC--
Confidence 466689999997664 5888888776555666666666653 332 2345566899999999999988888773322
Q ss_pred ChhHHHHHHHHHHHhCCCchH
Q 003802 172 TDYRVELSKYVVNYAGGLPLA 192 (794)
Q Consensus 172 ~~~~~~~~~~i~~~~~g~Pla 192 (794)
-...++....|++..+|...-
T Consensus 196 I~~e~~aL~~ia~~a~Gs~RD 216 (515)
T COG2812 196 INIEEDALSLIARAAEGSLRD 216 (515)
T ss_pred CccCHHHHHHHHHHcCCChhh
Confidence 233345666777777775543
No 231
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.87 E-value=0.00012 Score=81.79 Aligned_cols=35 Identities=29% Similarity=0.505 Sum_probs=18.6
Q ss_pred CCCCCEEeccccccccc--ccccccCccccccccccc
Q 003802 445 VPNLERLNLEGCTRLLE--VHQSVGTLKRLILLNLKD 479 (794)
Q Consensus 445 l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~ 479 (794)
++.|+.|.+.+|..... .-.....+++|+.|++++
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 223 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSG 223 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccC
Confidence 45666666666544443 223344555666666654
No 232
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.85 E-value=0.011 Score=63.27 Aligned_cols=129 Identities=18% Similarity=0.205 Sum_probs=74.3
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEEechhhhcccChHHHHHHHHHHHhccccccccchhhhHHHHHHHh
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWRL 94 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l 94 (794)
+.=|.++|++|+|||-||++|++..+..| +. +.. .+++.....+ +.....+.+++.-
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEag~NF-----is----VKG----PELlNkYVGE----------SErAVR~vFqRAR 601 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEAGANF-----IS----VKG----PELLNKYVGE----------SERAVRQVFQRAR 601 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhccCce-----Ee----ecC----HHHHHHHhhh----------HHHHHHHHHHHhh
Confidence 45578999999999999999999876655 22 111 1233333322 1122233334444
Q ss_pred cCCeEEEEEcCCCChH-------------HHHHHhcCCCC--CCCCCEEEEEeCChh-hhhh-c---CcCcEEEcCCCCh
Q 003802 95 CRKRVLVILDDVDQLE-------------QLQALVGNHDW--FGFGSRIIITSRDEH-VLKS-H---GVTNTYKVRGLDY 154 (794)
Q Consensus 95 ~~~r~LlVlDd~~~~~-------------~~~~l~~~~~~--~~~gs~IlvTtR~~~-v~~~-~---~~~~~~~l~~L~~ 154 (794)
..-+|+|+||.++... ....++..+.. ...|.-||-+|.... +-.. + .-+..+-++.=+.
T Consensus 602 ~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~ 681 (802)
T KOG0733|consen 602 ASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNA 681 (802)
T ss_pred cCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCH
Confidence 4689999999985431 14455544432 234555665444333 3222 1 1234555666677
Q ss_pred HhHHHHHHhhcc
Q 003802 155 VEALQLFHLKVS 166 (794)
Q Consensus 155 ~ea~~lf~~~~~ 166 (794)
+|-.++++...-
T Consensus 682 ~eR~~ILK~~tk 693 (802)
T KOG0733|consen 682 EERVAILKTITK 693 (802)
T ss_pred HHHHHHHHHHhc
Confidence 888888887764
No 233
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.85 E-value=0.0005 Score=65.58 Aligned_cols=32 Identities=25% Similarity=0.223 Sum_probs=13.7
Q ss_pred CcceeeeecCCCCCCCCCCCCCCceEEEcCCC
Q 003802 379 NLRYLKWHEYPFNSLPVSFRPEKLFKLNLCNS 410 (794)
Q Consensus 379 ~l~~L~~~~~~~~~l~~~~~~~~L~~L~L~~n 410 (794)
.+..|+..++.+..+...-.+++|++|.++.|
T Consensus 44 ~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn 75 (260)
T KOG2739|consen 44 ELELLSVINVGLTTLTNFPKLPKLKKLELSDN 75 (260)
T ss_pred chhhhhhhccceeecccCCCcchhhhhcccCC
Confidence 34444444444444333333444444444444
No 234
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.85 E-value=0.0032 Score=68.35 Aligned_cols=140 Identities=17% Similarity=0.217 Sum_probs=75.7
Q ss_pred CCCCeEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEEechhhhcccChHHHHHHHHHHHhccccccccchhhhHHHH
Q 003802 11 GLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLI 90 (794)
Q Consensus 11 ~~~~~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l 90 (794)
+..+-++++++||+|||||.+|+.++......|-. ++ +..+....+++.--+..+.. -....++.+
T Consensus 434 gs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfR---fS-vGG~tDvAeIkGHRRTYVGA----------MPGkiIq~L 499 (906)
T KOG2004|consen 434 GSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFR---FS-VGGMTDVAEIKGHRRTYVGA----------MPGKIIQCL 499 (906)
T ss_pred ccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEE---Ee-ccccccHHhhcccceeeecc----------CChHHHHHH
Confidence 34557899999999999999999999977655422 11 11122211211111111111 111222222
Q ss_pred HHHhcCCeEEEEEcCCCCh------HHHHHHhcCCCCCC-------------CCCEEEEEeCChhh----hhhcCcCcEE
Q 003802 91 RWRLCRKRVLVILDDVDQL------EQLQALVGNHDWFG-------------FGSRIIITSRDEHV----LKSHGVTNTY 147 (794)
Q Consensus 91 ~~~l~~~r~LlVlDd~~~~------~~~~~l~~~~~~~~-------------~gs~IlvTtR~~~v----~~~~~~~~~~ 147 (794)
+ ..+...-|+.+|.++.. +.-.+++..+.... .-|+|++...-..+ .......+.+
T Consensus 500 K-~v~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkVLFicTAN~idtIP~pLlDRMEvI 578 (906)
T KOG2004|consen 500 K-KVKTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKVLFICTANVIDTIPPPLLDRMEVI 578 (906)
T ss_pred H-hhCCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchhheEEEEeccccccCChhhhhhhhee
Confidence 2 33456778889988544 22333433332111 14677653322111 1123456789
Q ss_pred EcCCCChHhHHHHHHhhc
Q 003802 148 KVRGLDYVEALQLFHLKV 165 (794)
Q Consensus 148 ~l~~L~~~ea~~lf~~~~ 165 (794)
++.+...+|-..+-.++.
T Consensus 579 elsGYv~eEKv~IA~~yL 596 (906)
T KOG2004|consen 579 ELSGYVAEEKVKIAERYL 596 (906)
T ss_pred eccCccHHHHHHHHHHhh
Confidence 999999999888777665
No 235
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.84 E-value=0.011 Score=60.96 Aligned_cols=37 Identities=24% Similarity=0.398 Sum_probs=27.9
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEE
Q 003802 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (794)
Q Consensus 14 ~~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~ 50 (794)
..++|+|+|++|+||||++..++..+..+-..+.++.
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~ 276 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFIT 276 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEe
Confidence 3589999999999999999999886544322344443
No 236
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.84 E-value=0.0052 Score=58.76 Aligned_cols=110 Identities=13% Similarity=0.186 Sum_probs=62.7
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhhccccceEEEEechhhhcccChHHHHHHHHHHHhccccccccchhhhHHHHHHHhc
Q 003802 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWRLC 95 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~ 95 (794)
.+|.|+|+.|.||||++..+...+.......++..... .. ........+..+ .. ...+.....+.++..+.
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~-~E---~~~~~~~~~i~q----~~-vg~~~~~~~~~i~~aLr 72 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDP-IE---FVHESKRSLINQ----RE-VGLDTLSFENALKAALR 72 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCC-cc---ccccCccceeee----cc-cCCCccCHHHHHHHHhc
Confidence 47899999999999999998887655544455543111 00 000000001100 00 00112334556677777
Q ss_pred CCeEEEEEcCCCChHHHHHHhcCCCCCCCCCEEEEEeCChhh
Q 003802 96 RKRVLVILDDVDQLEQLQALVGNHDWFGFGSRIIITSRDEHV 137 (794)
Q Consensus 96 ~~r~LlVlDd~~~~~~~~~l~~~~~~~~~gs~IlvTtR~~~v 137 (794)
..+=.+++|++.+.+.+....... ..|..|+.|+-...+
T Consensus 73 ~~pd~ii~gEird~e~~~~~l~~a---~~G~~v~~t~Ha~~~ 111 (198)
T cd01131 73 QDPDVILVGEMRDLETIRLALTAA---ETGHLVMSTLHTNSA 111 (198)
T ss_pred CCcCEEEEcCCCCHHHHHHHHHHH---HcCCEEEEEecCCcH
Confidence 777899999998887665544332 245667777765443
No 237
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.82 E-value=7.8e-05 Score=83.28 Aligned_cols=127 Identities=23% Similarity=0.281 Sum_probs=60.4
Q ss_pred cccCceeccCCCcCccCC---CCCCCCCCCCEEecccc-ccccccc----ccccCcccccccccccccccc-ccccccC-
Q 003802 422 LKELKFMNLSHSCNLIRT---PDFTGVPNLERLNLEGC-TRLLEVH----QSVGTLKRLILLNLKDCRNLV-SFPKNVC- 491 (794)
Q Consensus 422 l~~L~~L~L~~n~~~~~~---~~~~~l~~L~~L~l~~~-~~~~~~~----~~~~~l~~L~~L~l~~n~~~~-~~~~~~~- 491 (794)
++.|+.|.+.++...... +....+++|+.|++++| ......+ .....+++|+.|+++++...+ ..-..+.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 566666666666544432 22455677777777663 2211111 223345666667776655322 1111121
Q ss_pred CCCCccEEEecCCCC-CCC-CCccccCCCCCcEEEccCccCc---ccCcccccCCCCCEEEc
Q 003802 492 LMKSLKILCLCGCLK-LEK-LPQDLGEVECLEELDVGGTAIR---QIPPSIVQLVNLKIFSL 548 (794)
Q Consensus 492 ~l~~L~~L~L~~~~~-~~~-~~~~~~~l~~L~~L~l~~~~l~---~l~~~l~~l~~L~~L~l 548 (794)
.+++|++|.+.+|.. +.. +......+++|++|+++++... .+.....++++|+.|.+
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~ 328 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKL 328 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhh
Confidence 255666666665552 211 1122344556666666655432 12222334555555444
No 238
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.80 E-value=0.011 Score=69.68 Aligned_cols=26 Identities=23% Similarity=0.317 Sum_probs=22.1
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhhc
Q 003802 16 RFIGICGMGGIGKTTLAKVLYNTLKD 41 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~~~~~ 41 (794)
.-+.++|++|+|||++|+.++.++.+
T Consensus 200 ~n~lL~G~pGvGKT~l~~~la~~i~~ 225 (857)
T PRK10865 200 NNPVLIGEPGVGKTAIVEGLAQRIIN 225 (857)
T ss_pred CceEEECCCCCCHHHHHHHHHHHhhc
Confidence 35569999999999999999997644
No 239
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.79 E-value=0.022 Score=56.61 Aligned_cols=149 Identities=17% Similarity=0.101 Sum_probs=79.7
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEEechhhhcc--cChHHHHHHHHHHHhccccccccchhhhHHHHHH
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVT--RGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRW 92 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~ 92 (794)
..-|.|+||.|.|||+|......+ .+.|.....+......-.. ..+..+.+++..++... .....+..+....+-.
T Consensus 49 snsviiigprgsgkT~li~~~Ls~-~q~~~E~~l~v~Lng~~~~dk~al~~I~rql~~e~~~~-~k~~gsfte~l~~lL~ 126 (408)
T KOG2228|consen 49 SNSVIIIGPRGSGKTILIDTRLSD-IQENGENFLLVRLNGELQTDKIALKGITRQLALELNRI-VKSFGSFTENLSKLLE 126 (408)
T ss_pred CCceEEEccCCCCceEeeHHHHhh-HHhcCCeEEEEEECccchhhHHHHHHHHHHHHHHHhhh-heeecccchhHHHHHH
Confidence 456779999999999999877766 3444443333322221111 12333444444332211 1112222333344444
Q ss_pred Hhc------CCeEEEEEcCCCChHH-------HHHHhcCCCCCCCCCEEEEEeCCh-------hhhhhcCcCcEEEcCCC
Q 003802 93 RLC------RKRVLVILDDVDQLEQ-------LQALVGNHDWFGFGSRIIITSRDE-------HVLKSHGVTNTYKVRGL 152 (794)
Q Consensus 93 ~l~------~~r~LlVlDd~~~~~~-------~~~l~~~~~~~~~gs~IlvTtR~~-------~v~~~~~~~~~~~l~~L 152 (794)
.++ +-+..+|+|.+|-... +.-+-.......|-|.|-+|||-. .|........++-++.+
T Consensus 127 ~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrld~lE~LEKRVKSRFshr~I~m~~~~ 206 (408)
T KOG2228|consen 127 ALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRLDILELLEKRVKSRFSHRVIFMLPSL 206 (408)
T ss_pred HHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeeccccHHHHHHHHHHhhcccceeeccCCC
Confidence 443 2357888887754321 222211222235677888999963 34444455556667778
Q ss_pred ChHhHHHHHHhhc
Q 003802 153 DYVEALQLFHLKV 165 (794)
Q Consensus 153 ~~~ea~~lf~~~~ 165 (794)
+-++..++++...
T Consensus 207 ~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 207 PLGDYVDLYRKLL 219 (408)
T ss_pred ChHHHHHHHHHHh
Confidence 8888888887765
No 240
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=96.78 E-value=0.034 Score=57.83 Aligned_cols=159 Identities=14% Similarity=0.181 Sum_probs=91.2
Q ss_pred hhhHhHhcC--CCCeEEEEEEccCCCcHHHHHHHHHHHhhcccc--ceEEEEechhhhcccChHHHHHHHHHHHhccccc
Q 003802 3 KMNGYLEAG--LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFE--ASSFLANVREVSVTRGLVPLQEQLLSEVLMERDL 78 (794)
Q Consensus 3 ~l~~~l~~~--~~~~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 78 (794)
.+.+++... ....+-+.|.|.+|.|||.+...++.+...... .++++.+ ..-....++...|...+......
T Consensus 161 ~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc----~sl~~~~aiF~kI~~~~~q~~~s 236 (529)
T KOG2227|consen 161 IVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINC----TSLTEASAIFKKIFSSLLQDLVS 236 (529)
T ss_pred HHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEee----ccccchHHHHHHHHHHHHHHhcC
Confidence 345555432 334678999999999999999999987654443 3466653 22234445666777665333333
Q ss_pred cccchhhhHHHHHHHhcCC--eEEEEEcCCCChHH--HHHHhcCCCC-CCCCCEEEEEeC--Ch----hhhhhc-----C
Q 003802 79 IIWDVHKGINLIRWRLCRK--RVLVILDDVDQLEQ--LQALVGNHDW-FGFGSRIIITSR--DE----HVLKSH-----G 142 (794)
Q Consensus 79 ~~~~~~~~~~~l~~~l~~~--r~LlVlDd~~~~~~--~~~l~~~~~~-~~~gs~IlvTtR--~~----~v~~~~-----~ 142 (794)
...+ .+..+.+.++..+. .+|+|+|..|.... -+.+...+.+ .-+++++|+.-- .- .....+ .
T Consensus 237 ~~~~-~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~LprL~~~~~~ 315 (529)
T KOG2227|consen 237 PGTG-MQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRFLPRLNLDLTI 315 (529)
T ss_pred Cchh-HHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHHhhhhhhccCC
Confidence 2222 34455666666543 58999999876542 1111111111 124555443221 10 011111 1
Q ss_pred cCcEEEcCCCChHhHHHHHHhhcc
Q 003802 143 VTNTYKVRGLDYVEALQLFHLKVS 166 (794)
Q Consensus 143 ~~~~~~l~~L~~~ea~~lf~~~~~ 166 (794)
....+...|.+.++..+++..+..
T Consensus 316 ~P~~l~F~PYTk~qI~~Il~~rl~ 339 (529)
T KOG2227|consen 316 KPKLLVFPPYTKDQIVEILQQRLS 339 (529)
T ss_pred CCceeeecCCCHHHHHHHHHHHHh
Confidence 234677889999999999999873
No 241
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.77 E-value=0.013 Score=69.30 Aligned_cols=128 Identities=11% Similarity=0.079 Sum_probs=67.7
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhhccc------cceEEEEechhhhcccChHHHHHHHHHHHhccccccccchhhhHHH
Q 003802 16 RFIGICGMGGIGKTTLAKVLYNTLKDQF------EASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINL 89 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~~~~~~f------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 89 (794)
.-+.++|++|+|||++|+.+++++.+.+ ...+|... +..+.... . ...+.+.....
T Consensus 195 ~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~---------~~~l~a~~------~---~~g~~e~~l~~ 256 (852)
T TIGR03346 195 NNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALD---------MGALIAGA------K---YRGEFEERLKA 256 (852)
T ss_pred CceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEee---------HHHHhhcc------h---hhhhHHHHHHH
Confidence 4455899999999999999999765432 22333321 11110000 0 00122222233
Q ss_pred HHHHhc--CCeEEEEEcCCCChH----------HHHHHhcCCCCCCCC-CEEEEEeCChhhhhh-------cCcCcEEEc
Q 003802 90 IRWRLC--RKRVLVILDDVDQLE----------QLQALVGNHDWFGFG-SRIIITSRDEHVLKS-------HGVTNTYKV 149 (794)
Q Consensus 90 l~~~l~--~~r~LlVlDd~~~~~----------~~~~l~~~~~~~~~g-s~IlvTtR~~~v~~~-------~~~~~~~~l 149 (794)
+.+.+. +++.+|++|+++... ..+.+.+.+ ..| -++|-+|........ ......+.+
T Consensus 257 ~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l---~~g~i~~IgaTt~~e~r~~~~~d~al~rRf~~i~v 333 (852)
T TIGR03346 257 VLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPAL---ARGELHCIGATTLDEYRKYIEKDAALERRFQPVFV 333 (852)
T ss_pred HHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhh---hcCceEEEEeCcHHHHHHHhhcCHHHHhcCCEEEe
Confidence 333332 468999999986542 122222222 233 344545554433111 122346788
Q ss_pred CCCChHhHHHHHHhh
Q 003802 150 RGLDYVEALQLFHLK 164 (794)
Q Consensus 150 ~~L~~~ea~~lf~~~ 164 (794)
...+.++...+++..
T Consensus 334 ~~p~~~~~~~iL~~~ 348 (852)
T TIGR03346 334 DEPTVEDTISILRGL 348 (852)
T ss_pred CCCCHHHHHHHHHHH
Confidence 888999999988764
No 242
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.77 E-value=0.013 Score=68.39 Aligned_cols=150 Identities=15% Similarity=0.155 Sum_probs=75.3
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEEechhhhcccChHHHHHHHHHHHhccccccccchhhhHHHHHHHh
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWRL 94 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l 94 (794)
.+-|.|+|++|+|||++|+.+++.....| +.+.. ... ...... ...+.....+....
T Consensus 212 ~~giLL~GppGtGKT~laraia~~~~~~~---i~i~~-~~i---------~~~~~g----------~~~~~l~~lf~~a~ 268 (733)
T TIGR01243 212 PKGVLLYGPPGTGKTLLAKAVANEAGAYF---ISING-PEI---------MSKYYG----------ESEERLREIFKEAE 268 (733)
T ss_pred CceEEEECCCCCChHHHHHHHHHHhCCeE---EEEec-HHH---------hccccc----------HHHHHHHHHHHHHH
Confidence 46788999999999999999999765432 22221 000 000000 00111122222333
Q ss_pred cCCeEEEEEcCCCChH-------------HHHHHhcCCCCC-CCCCEEEE-EeCCh-hhhhhcC----cCcEEEcCCCCh
Q 003802 95 CRKRVLVILDDVDQLE-------------QLQALVGNHDWF-GFGSRIII-TSRDE-HVLKSHG----VTNTYKVRGLDY 154 (794)
Q Consensus 95 ~~~r~LlVlDd~~~~~-------------~~~~l~~~~~~~-~~gs~Ilv-TtR~~-~v~~~~~----~~~~~~l~~L~~ 154 (794)
...+.+|++|+++... ....+...+... ..+..++| ||... .+...+. -...+.+...+.
T Consensus 269 ~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~ 348 (733)
T TIGR01243 269 ENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVIGATNRPDALDPALRRPGRFDREIVIRVPDK 348 (733)
T ss_pred hcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEEeecCChhhcCHHHhCchhccEEEEeCCcCH
Confidence 4567899999985431 122333322211 22334444 44432 2222211 234677777788
Q ss_pred HhHHHHHHhhccCCCCCChhHHHHHHHHHHHhCCCc
Q 003802 155 VEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLP 190 (794)
Q Consensus 155 ~ea~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 190 (794)
++-.+++....-+.. .. .......+++.+.|..
T Consensus 349 ~~R~~Il~~~~~~~~-l~--~d~~l~~la~~t~G~~ 381 (733)
T TIGR01243 349 RARKEILKVHTRNMP-LA--EDVDLDKLAEVTHGFV 381 (733)
T ss_pred HHHHHHHHHHhcCCC-Cc--cccCHHHHHHhCCCCC
Confidence 888888875542111 10 0122456777777754
No 243
>PRK04328 hypothetical protein; Provisional
Probab=96.75 E-value=0.011 Score=58.71 Aligned_cols=49 Identities=18% Similarity=0.257 Sum_probs=36.5
Q ss_pred hhhhHhHhcCCCCeEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEE
Q 003802 2 EKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (794)
Q Consensus 2 ~~l~~~l~~~~~~~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~ 50 (794)
+.+.++|..+-+.-.++.|.|++|+|||++|.+++......-..++|+.
T Consensus 10 ~~LD~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis 58 (249)
T PRK04328 10 PGMDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVA 58 (249)
T ss_pred hhHHHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence 3456666655556789999999999999999998765333345677876
No 244
>PRK06762 hypothetical protein; Provisional
Probab=96.75 E-value=0.0067 Score=56.33 Aligned_cols=25 Identities=48% Similarity=0.553 Sum_probs=22.9
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHh
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNTL 39 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~~ 39 (794)
..+|.|+|+.|+||||+|+++++..
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999999876
No 245
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=96.73 E-value=0.0079 Score=65.81 Aligned_cols=48 Identities=33% Similarity=0.503 Sum_probs=37.4
Q ss_pred ChhhhHhHhcC---CCCeEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEE
Q 003802 1 MEKMNGYLEAG---LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (794)
Q Consensus 1 ~~~l~~~l~~~---~~~~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~ 50 (794)
+++|..||... ....+++.++||+|+||||.++.+++.. .|+..-|..
T Consensus 28 v~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~el--g~~v~Ew~n 78 (519)
T PF03215_consen 28 VEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKEL--GFEVQEWIN 78 (519)
T ss_pred HHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHh--CCeeEEecC
Confidence 36888898752 3346799999999999999999999974 456666653
No 246
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.72 E-value=0.016 Score=63.05 Aligned_cols=156 Identities=18% Similarity=0.174 Sum_probs=82.4
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHh-hccccceEEEEechhhhcccChHHHHHHHHHHHhccccccccchhhhHHHHHHH
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNTL-KDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWR 93 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~~-~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~ 93 (794)
..-|.|.|+.|+|||+||+++++.+ ++..-++.++++..- ....+..+++.+-. .+.+.
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l--~~~~~e~iQk~l~~------------------vfse~ 490 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTL--DGSSLEKIQKFLNN------------------VFSEA 490 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhc--cchhHHHHHHHHHH------------------HHHHH
Confidence 4678899999999999999999865 445556666663211 11122222222221 22334
Q ss_pred hcCCeEEEEEcCCCChHH---------------HHHHh----cCCCCCCCCCE--EEEEeCChhhh-hhcC----cCcEE
Q 003802 94 LCRKRVLVILDDVDQLEQ---------------LQALV----GNHDWFGFGSR--IIITSRDEHVL-KSHG----VTNTY 147 (794)
Q Consensus 94 l~~~r~LlVlDd~~~~~~---------------~~~l~----~~~~~~~~gs~--IlvTtR~~~v~-~~~~----~~~~~ 147 (794)
+.-.+-++||||++-... +..+. ..+. ..+.+ +|.|.....-. +.+. -....
T Consensus 491 ~~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~--~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~ 568 (952)
T KOG0735|consen 491 LWYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYL--KRNRKIAVIATGQELQTLNPLLVSPLLFQIVI 568 (952)
T ss_pred HhhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHH--ccCcEEEEEEechhhhhcChhhcCccceEEEE
Confidence 445788999999843311 11111 1111 22343 44454443221 1111 23467
Q ss_pred EcCCCChHhHHHHHHhhccCCCCCChhHHHHHHHHHHHhCCC-chHHH
Q 003802 148 KVRGLDYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGL-PLAIE 194 (794)
Q Consensus 148 ~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plai~ 194 (794)
.+..+..++-.++++...-... .....+..+-+..+|+|. |.-++
T Consensus 569 ~L~ap~~~~R~~IL~~~~s~~~--~~~~~~dLd~ls~~TEGy~~~DL~ 614 (952)
T KOG0735|consen 569 ALPAPAVTRRKEILTTIFSKNL--SDITMDDLDFLSVKTEGYLATDLV 614 (952)
T ss_pred ecCCcchhHHHHHHHHHHHhhh--hhhhhHHHHHHHHhcCCccchhHH
Confidence 8888888888877776552111 111223333477777663 44443
No 247
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.71 E-value=0.0057 Score=55.17 Aligned_cols=27 Identities=30% Similarity=0.176 Sum_probs=21.5
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhhcc
Q 003802 16 RFIGICGMGGIGKTTLAKVLYNTLKDQ 42 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~~~~~~ 42 (794)
..|-|++..|.||||+|...+-+...+
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~~ 29 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALGH 29 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 467788888999999999888754433
No 248
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=96.71 E-value=0.0088 Score=57.89 Aligned_cols=148 Identities=16% Similarity=0.195 Sum_probs=82.5
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEEechhhhcccChHHHHHHHHHHHhccccccccchhhhHHHHHHH
Q 003802 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWR 93 (794)
Q Consensus 14 ~~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~ 93 (794)
.+--|.++|++|.||||||.-+++.....+. +..........++. .++..
T Consensus 51 ~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k----~tsGp~leK~gDla----aiLt~---------------------- 100 (332)
T COG2255 51 ALDHVLLFGPPGLGKTTLAHIIANELGVNLK----ITSGPALEKPGDLA----AILTN---------------------- 100 (332)
T ss_pred CcCeEEeeCCCCCcHHHHHHHHHHHhcCCeE----ecccccccChhhHH----HHHhc----------------------
Confidence 4668889999999999999999997654432 11111111111111 11111
Q ss_pred hcCCeEEEEEcCCCChHH-HHHHh-cCCC--------CCCCC-----------CEEEEEeCChhhhhhcCc--CcEEEcC
Q 003802 94 LCRKRVLVILDDVDQLEQ-LQALV-GNHD--------WFGFG-----------SRIIITSRDEHVLKSHGV--TNTYKVR 150 (794)
Q Consensus 94 l~~~r~LlVlDd~~~~~~-~~~l~-~~~~--------~~~~g-----------s~IlvTtR~~~v~~~~~~--~~~~~l~ 150 (794)
+ .+.=++++|.+..... .++++ +... ..+++ +-|=-|||.-.+...+.. ....+++
T Consensus 101 L-e~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATTr~G~lt~PLrdRFGi~~rle 179 (332)
T COG2255 101 L-EEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATTRAGMLTNPLRDRFGIIQRLE 179 (332)
T ss_pred C-CcCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeeccccccccchhHHhcCCeeeee
Confidence 1 1223456676644321 11111 1110 01222 334468886544333322 2367889
Q ss_pred CCChHhHHHHHHhhccCCCCCChhHHHHHHHHHHHhCCCchHHH
Q 003802 151 GLDYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIE 194 (794)
Q Consensus 151 ~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~ 194 (794)
-.+.+|-.++..+.+. .-..+..++.+.+|+++..|-|.-+.
T Consensus 180 fY~~~eL~~Iv~r~a~--~l~i~i~~~~a~eIA~rSRGTPRIAn 221 (332)
T COG2255 180 FYTVEELEEIVKRSAK--ILGIEIDEEAALEIARRSRGTPRIAN 221 (332)
T ss_pred cCCHHHHHHHHHHHHH--HhCCCCChHHHHHHHHhccCCcHHHH
Confidence 9999999999988772 11122334678899999999996544
No 249
>PRK07261 topology modulation protein; Provisional
Probab=96.70 E-value=0.0067 Score=56.43 Aligned_cols=23 Identities=43% Similarity=0.572 Sum_probs=20.6
Q ss_pred EEEEEccCCCcHHHHHHHHHHHh
Q 003802 17 FIGICGMGGIGKTTLAKVLYNTL 39 (794)
Q Consensus 17 vi~i~G~~GvGKTtLa~~v~~~~ 39 (794)
.|.|+|++|+||||||++++...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 48899999999999999998754
No 250
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.70 E-value=0.0018 Score=58.13 Aligned_cols=22 Identities=45% Similarity=0.551 Sum_probs=20.7
Q ss_pred EEEEccCCCcHHHHHHHHHHHh
Q 003802 18 IGICGMGGIGKTTLAKVLYNTL 39 (794)
Q Consensus 18 i~i~G~~GvGKTtLa~~v~~~~ 39 (794)
|.|+|+.|+|||+||+.+++..
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~ 23 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL 23 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6799999999999999999987
No 251
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.69 E-value=0.013 Score=62.59 Aligned_cols=36 Identities=28% Similarity=0.284 Sum_probs=27.9
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHHHhhccccceEEE
Q 003802 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFL 49 (794)
Q Consensus 14 ~~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~ 49 (794)
.+.+|.++|+.|+||||.|..++..++..-..+..+
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV 129 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLV 129 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEe
Confidence 478999999999999999999998766542233444
No 252
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.68 E-value=0.013 Score=61.34 Aligned_cols=128 Identities=20% Similarity=0.117 Sum_probs=69.2
Q ss_pred hHhHhcCCCCeEEEEEEccCCCcHHHHHHHHHHHhhccc---------------------cceEEEEechhhhcccC---
Q 003802 5 NGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQF---------------------EASSFLANVREVSVTRG--- 60 (794)
Q Consensus 5 ~~~l~~~~~~~~vi~i~G~~GvGKTtLa~~v~~~~~~~f---------------------~~~~~~~~~~~~~~~~~--- 60 (794)
..+........+.+.++|+.|+||||+|..+++.+.... +.+..+. .+....
T Consensus 14 ~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~----~s~~~~~~i 89 (325)
T COG0470 14 LVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELN----PSDLRKIDI 89 (325)
T ss_pred HHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEec----ccccCCCcc
Confidence 334443323345699999999999999999999654222 2233332 111111
Q ss_pred hHHHHHHHHHHHhccccccccchhhhHHHHHHHhcCCeEEEEEcCCCChHH--HHHHhcCCCCCCCCCEEEEEeCC-hhh
Q 003802 61 LVPLQEQLLSEVLMERDLIIWDVHKGINLIRWRLCRKRVLVILDDVDQLEQ--LQALVGNHDWFGFGSRIIITSRD-EHV 137 (794)
Q Consensus 61 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDd~~~~~~--~~~l~~~~~~~~~gs~IlvTtR~-~~v 137 (794)
..+..+++.+...... ..++.-++|+|+++.+.. -.+++.........+.+|++|.. ..+
T Consensus 90 ~~~~vr~~~~~~~~~~-----------------~~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~n~~~~i 152 (325)
T COG0470 90 IVEQVRELAEFLSESP-----------------LEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILITNDPSKI 152 (325)
T ss_pred hHHHHHHHHHHhccCC-----------------CCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEcCChhhc
Confidence 2222333332211100 035678999999987754 55555555444567777777763 333
Q ss_pred hhhc-CcCcEEEcCCCC
Q 003802 138 LKSH-GVTNTYKVRGLD 153 (794)
Q Consensus 138 ~~~~-~~~~~~~l~~L~ 153 (794)
.... +....+++.+.+
T Consensus 153 l~tI~SRc~~i~f~~~~ 169 (325)
T COG0470 153 LPTIRSRCQRIRFKPPS 169 (325)
T ss_pred cchhhhcceeeecCCch
Confidence 3322 223356666633
No 253
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=96.68 E-value=0.004 Score=63.27 Aligned_cols=30 Identities=20% Similarity=0.358 Sum_probs=26.4
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHHHHhhcc
Q 003802 13 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQ 42 (794)
Q Consensus 13 ~~~~vi~i~G~~GvGKTtLa~~v~~~~~~~ 42 (794)
.-++.++|+|+.|+|||.+|+.++....-.
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~~ 175 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGIE 175 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCCC
Confidence 447899999999999999999999987654
No 254
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.67 E-value=0.0053 Score=56.59 Aligned_cols=80 Identities=15% Similarity=0.084 Sum_probs=43.7
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhhccccceEEEEechhhhcccChHHHHHHHHHHHhccccccccchhhhHHHHHHHhcC
Q 003802 17 FIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWRLCR 96 (794)
Q Consensus 17 vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 96 (794)
++.|.|.+|+|||++|.+++.. ....++|+.. ....+. +..+.+.+. .......... .+....+.+.+..
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~---~~~~~~y~at----~~~~d~-em~~rI~~H-~~~R~~~w~t-~E~~~~l~~~l~~ 70 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAE---LGGPVTYIAT----AEAFDD-EMAERIARH-RKRRPAHWRT-IETPRDLVSALKE 70 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHh---cCCCeEEEEc----cCcCCH-HHHHHHHHH-HHhCCCCceE-eecHHHHHHHHHh
Confidence 3679999999999999999875 2245677652 222222 344444443 2222222222 2223334444421
Q ss_pred --CeEEEEEcCC
Q 003802 97 --KRVLVILDDV 106 (794)
Q Consensus 97 --~r~LlVlDd~ 106 (794)
+.-.+++|.+
T Consensus 71 ~~~~~~VLIDcl 82 (169)
T cd00544 71 LDPGDVVLIDCL 82 (169)
T ss_pred cCCCCEEEEEcH
Confidence 2337899976
No 255
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.66 E-value=0.0099 Score=58.61 Aligned_cols=49 Identities=20% Similarity=0.300 Sum_probs=35.8
Q ss_pred hhhhHhHhcCCCCeEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEE
Q 003802 2 EKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (794)
Q Consensus 2 ~~l~~~l~~~~~~~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~ 50 (794)
+.+.+++..+-+.-.++.|.|++|+|||++|.+++......-..++|+.
T Consensus 7 ~~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is 55 (229)
T TIGR03881 7 EGLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVT 55 (229)
T ss_pred hhHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEE
Confidence 3455556555455689999999999999999988764333445678876
No 256
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.66 E-value=0.022 Score=52.68 Aligned_cols=80 Identities=16% Similarity=0.084 Sum_probs=44.0
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhhccccceEEEEechhhhcccChHHHHHHHHHHHhccccccccchh---hhHHHHHHH
Q 003802 17 FIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVH---KGINLIRWR 93 (794)
Q Consensus 17 vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~---~~~~~l~~~ 93 (794)
+|.|.|.+|+|||++|..++.+... ..+++.. ....-.+..+++..... .....+...+ ++...+...
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~---~~~~iat-----~~~~~~e~~~ri~~h~~-~R~~~w~t~E~~~~l~~~i~~~ 73 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGL---QVLYIAT-----AQPFDDEMAARIAHHRQ-RRPAHWQTVEEPLDLAELLRAD 73 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCC---CcEeCcC-----CCCChHHHHHHHHHHHh-cCCCCCeEecccccHHHHHHhh
Confidence 6899999999999999999876432 2344431 11222344555555422 2222232222 233334433
Q ss_pred hcCCeEEEEEcCC
Q 003802 94 LCRKRVLVILDDV 106 (794)
Q Consensus 94 l~~~r~LlVlDd~ 106 (794)
..+ .-++++|.+
T Consensus 74 ~~~-~~~VlID~L 85 (170)
T PRK05800 74 AAP-GRCVLVDCL 85 (170)
T ss_pred cCC-CCEEEehhH
Confidence 332 337888986
No 257
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.65 E-value=0.042 Score=64.01 Aligned_cols=25 Identities=44% Similarity=0.496 Sum_probs=22.6
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHh
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNTL 39 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~~ 39 (794)
..++.++|+.|+|||++|+.+++..
T Consensus 484 ~~~~lf~Gp~GvGKT~lA~~la~~l 508 (731)
T TIGR02639 484 VGSFLFTGPTGVGKTELAKQLAEAL 508 (731)
T ss_pred ceeEEEECCCCccHHHHHHHHHHHh
Confidence 4578999999999999999999976
No 258
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.64 E-value=0.014 Score=68.13 Aligned_cols=149 Identities=17% Similarity=0.160 Sum_probs=78.1
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEEechhhhcccChHHHHHHHHHHHhccccccccchhhhHHHHH-HH
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIR-WR 93 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~-~~ 93 (794)
.+-|.++|++|+|||++|+.+++.....| +.+.. .++.....+ +.+..+..+. ..
T Consensus 487 ~~giLL~GppGtGKT~lakalA~e~~~~f---i~v~~--------------~~l~~~~vG-------ese~~i~~~f~~A 542 (733)
T TIGR01243 487 PKGVLLFGPPGTGKTLLAKAVATESGANF---IAVRG--------------PEILSKWVG-------ESEKAIREIFRKA 542 (733)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhcCCCE---EEEeh--------------HHHhhcccC-------cHHHHHHHHHHHH
Confidence 45688999999999999999999765433 22220 011111000 0111122222 22
Q ss_pred hcCCeEEEEEcCCCChH--------------HHHHHhcCCCC--CCCCCEEEEEeCChhhh-hhc----CcCcEEEcCCC
Q 003802 94 LCRKRVLVILDDVDQLE--------------QLQALVGNHDW--FGFGSRIIITSRDEHVL-KSH----GVTNTYKVRGL 152 (794)
Q Consensus 94 l~~~r~LlVlDd~~~~~--------------~~~~l~~~~~~--~~~gs~IlvTtR~~~v~-~~~----~~~~~~~l~~L 152 (794)
-+..+.+|++|+++... ....++..+.. ...+..||.||...... ..+ .-...+.++..
T Consensus 543 ~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~P 622 (733)
T TIGR01243 543 RQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPP 622 (733)
T ss_pred HhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCc
Confidence 34567999999985431 12333333221 12234455566543322 111 23457788888
Q ss_pred ChHhHHHHHHhhccCCCCCChhHHHHHHHHHHHhCCCc
Q 003802 153 DYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLP 190 (794)
Q Consensus 153 ~~~ea~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 190 (794)
+.++-.++|+....+...... .....+++.+.|.-
T Consensus 623 d~~~R~~i~~~~~~~~~~~~~---~~l~~la~~t~g~s 657 (733)
T TIGR01243 623 DEEARKEIFKIHTRSMPLAED---VDLEELAEMTEGYT 657 (733)
T ss_pred CHHHHHHHHHHHhcCCCCCcc---CCHHHHHHHcCCCC
Confidence 888888888766522211111 12355677776644
No 259
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=96.64 E-value=0.0044 Score=58.39 Aligned_cols=30 Identities=47% Similarity=0.596 Sum_probs=27.2
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHHHHhhcc
Q 003802 13 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQ 42 (794)
Q Consensus 13 ~~~~vi~i~G~~GvGKTtLa~~v~~~~~~~ 42 (794)
+.+.+|+|.|.+|.||||+|++++..++..
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~ 35 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVE 35 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCcC
Confidence 457899999999999999999999988765
No 260
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.64 E-value=0.0062 Score=61.96 Aligned_cols=49 Identities=29% Similarity=0.303 Sum_probs=36.4
Q ss_pred hhhHhHh-cCCCCeEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEEe
Q 003802 3 KMNGYLE-AGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLAN 51 (794)
Q Consensus 3 ~l~~~l~-~~~~~~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~~ 51 (794)
.+..+|. -+-+.-+++-|+|++|+||||||.+++......-..++|++.
T Consensus 42 ~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~ 91 (321)
T TIGR02012 42 SLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDA 91 (321)
T ss_pred HHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcc
Confidence 3455554 444556899999999999999999988765544456778863
No 261
>PRK14974 cell division protein FtsY; Provisional
Probab=96.63 E-value=0.018 Score=59.27 Aligned_cols=29 Identities=34% Similarity=0.353 Sum_probs=25.1
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHHHhhcc
Q 003802 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQ 42 (794)
Q Consensus 14 ~~~vi~i~G~~GvGKTtLa~~v~~~~~~~ 42 (794)
...+|.++|+.|+||||++.+++..++..
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~ 167 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKN 167 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 46899999999999999999999866544
No 262
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.63 E-value=0.0062 Score=62.01 Aligned_cols=49 Identities=27% Similarity=0.257 Sum_probs=36.8
Q ss_pred hhhHhHh-cCCCCeEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEEe
Q 003802 3 KMNGYLE-AGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLAN 51 (794)
Q Consensus 3 ~l~~~l~-~~~~~~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~~ 51 (794)
.|..+|. -+-+.-+++-|+|++|+||||||.+++......-..++|++.
T Consensus 42 ~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~ 91 (325)
T cd00983 42 SLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDA 91 (325)
T ss_pred HHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECc
Confidence 3455555 344556899999999999999999988765555567788873
No 263
>PRK06696 uridine kinase; Validated
Probab=96.62 E-value=0.0032 Score=61.67 Aligned_cols=41 Identities=24% Similarity=0.318 Sum_probs=32.2
Q ss_pred hhhhHhHhc-CCCCeEEEEEEccCCCcHHHHHHHHHHHhhcc
Q 003802 2 EKMNGYLEA-GLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ 42 (794)
Q Consensus 2 ~~l~~~l~~-~~~~~~vi~i~G~~GvGKTtLa~~v~~~~~~~ 42 (794)
++|.+.+.. ..+...+|+|.|.+|+||||+|++++..+...
T Consensus 8 ~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~ 49 (223)
T PRK06696 8 KELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIKKR 49 (223)
T ss_pred HHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 445555543 44568999999999999999999999977543
No 264
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.62 E-value=0.011 Score=63.15 Aligned_cols=128 Identities=20% Similarity=0.238 Sum_probs=67.8
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEEechhhhcccChHHHHHHHHHHHhccccccccchhhhHHHHHHHh
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWRL 94 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l 94 (794)
.+=|.++|++|+|||.||++++....-- |+. ++. -.++..+.++ +.+.+.+.+.+.-
T Consensus 223 prGvLlHGPPGCGKT~lA~AiAgel~vP-----f~~----isA--------peivSGvSGE------SEkkiRelF~~A~ 279 (802)
T KOG0733|consen 223 PRGVLLHGPPGCGKTSLANAIAGELGVP-----FLS----ISA--------PEIVSGVSGE------SEKKIRELFDQAK 279 (802)
T ss_pred CCceeeeCCCCccHHHHHHHHhhhcCCc-----eEe----ecc--------hhhhcccCcc------cHHHHHHHHHHHh
Confidence 5678899999999999999999976432 222 111 1122221111 2222233333344
Q ss_pred cCCeEEEEEcCCCChH--------H-----HHHHhcCCCC---C-CCCCEEEE---EeCChhhhhhcC----cCcEEEcC
Q 003802 95 CRKRVLVILDDVDQLE--------Q-----LQALVGNHDW---F-GFGSRIII---TSRDEHVLKSHG----VTNTYKVR 150 (794)
Q Consensus 95 ~~~r~LlVlDd~~~~~--------~-----~~~l~~~~~~---~-~~gs~Ilv---TtR~~~v~~~~~----~~~~~~l~ 150 (794)
..-++++++|+++.+. + ...++..... . ..|-.|+| |+|...+-..+. -+..+.+.
T Consensus 280 ~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~ 359 (802)
T KOG0733|consen 280 SNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSLDPALRRAGRFDREICLG 359 (802)
T ss_pred ccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCcccCHHHhccccccceeeec
Confidence 4579999999986542 1 2333332211 1 12333433 666654433332 23456666
Q ss_pred CCChHhHHHHHHhhc
Q 003802 151 GLDYVEALQLFHLKV 165 (794)
Q Consensus 151 ~L~~~ea~~lf~~~~ 165 (794)
.=++.+-.++++..+
T Consensus 360 vP~e~aR~~IL~~~~ 374 (802)
T KOG0733|consen 360 VPSETAREEILRIIC 374 (802)
T ss_pred CCchHHHHHHHHHHH
Confidence 656666666665554
No 265
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=96.61 E-value=0.056 Score=55.51 Aligned_cols=48 Identities=17% Similarity=0.097 Sum_probs=33.2
Q ss_pred EEEcCCCChHhHHHHHHhhccCCCCCC-hhHHHHHHHHHHHhCCCchHH
Q 003802 146 TYKVRGLDYVEALQLFHLKVSNGKQPT-DYRVELSKYVVNYAGGLPLAI 193 (794)
Q Consensus 146 ~~~l~~L~~~ea~~lf~~~~~~~~~~~-~~~~~~~~~i~~~~~g~Plai 193 (794)
++++++++.+|+..++.-....+.-.. ...+...+++.-..+|+|.-+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 789999999999999987763332222 233455667777778998644
No 266
>PRK11823 DNA repair protein RadA; Provisional
Probab=96.61 E-value=0.01 Score=64.17 Aligned_cols=49 Identities=24% Similarity=0.257 Sum_probs=36.4
Q ss_pred hhhhHhHhcCCCCeEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEE
Q 003802 2 EKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (794)
Q Consensus 2 ~~l~~~l~~~~~~~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~ 50 (794)
+++.+.+..+-..-.++.|.|.+|+|||||+.+++.....+-..++|++
T Consensus 67 ~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs 115 (446)
T PRK11823 67 GELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVS 115 (446)
T ss_pred HHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 4555666555445679999999999999999999986654334567776
No 267
>PRK09354 recA recombinase A; Provisional
Probab=96.59 E-value=0.0072 Score=62.05 Aligned_cols=96 Identities=18% Similarity=0.156 Sum_probs=56.4
Q ss_pred hhhHhHh-cCCCCeEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEEechhhhcccChHHHHHHHHHHHhcccc----
Q 003802 3 KMNGYLE-AGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERD---- 77 (794)
Q Consensus 3 ~l~~~l~-~~~~~~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---- 77 (794)
.|..+|. -+-+.-+++-|+|+.|+||||||.+++......-..++|++.-... +. ..++.++...+
T Consensus 47 ~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~----~~-----~~a~~lGvdld~lli 117 (349)
T PRK09354 47 ALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHAL----DP-----VYAKKLGVDIDNLLV 117 (349)
T ss_pred HHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccch----HH-----HHHHHcCCCHHHeEE
Confidence 4555555 4455678999999999999999999887655555677888733222 11 12222221110
Q ss_pred ccccchhhhHHHHHHHhc-CCeEEEEEcCCC
Q 003802 78 LIIWDVHKGINLIRWRLC-RKRVLVILDDVD 107 (794)
Q Consensus 78 ~~~~~~~~~~~~l~~~l~-~~r~LlVlDd~~ 107 (794)
..+...++....+....+ +..-++|+|.+-
T Consensus 118 ~qp~~~Eq~l~i~~~li~s~~~~lIVIDSva 148 (349)
T PRK09354 118 SQPDTGEQALEIADTLVRSGAVDLIVVDSVA 148 (349)
T ss_pred ecCCCHHHHHHHHHHHhhcCCCCEEEEeChh
Confidence 111233344444444443 356689999873
No 268
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.59 E-value=0.039 Score=58.52 Aligned_cols=47 Identities=23% Similarity=0.381 Sum_probs=34.7
Q ss_pred ChhhhHhHh-----cCCCCeEEEEEEccCCCcHHHHHHHHHHHhhccccceEEE
Q 003802 1 MEKMNGYLE-----AGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFL 49 (794)
Q Consensus 1 ~~~l~~~l~-----~~~~~~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~ 49 (794)
+++|..||. ...-+.+|..|+|++|+||||.++.++... .+..+-|.
T Consensus 91 I~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskel--g~~~~Ew~ 142 (634)
T KOG1970|consen 91 ISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKEL--GYQLIEWS 142 (634)
T ss_pred HHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhh--Cceeeeec
Confidence 357888887 333456799999999999999999998853 23344454
No 269
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.57 E-value=0.0098 Score=61.68 Aligned_cols=48 Identities=17% Similarity=0.281 Sum_probs=34.8
Q ss_pred hhhHhHhcCCCCeEEEEEEccCCCcHHHHHHHHHHHhhcc------ccceEEEE
Q 003802 3 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ------FEASSFLA 50 (794)
Q Consensus 3 ~l~~~l~~~~~~~~vi~i~G~~GvGKTtLa~~v~~~~~~~------f~~~~~~~ 50 (794)
.+.++|..+-+.-.++-|+|++|+|||+++.+++...... =..++|++
T Consensus 90 ~lD~~l~GGi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~ 143 (317)
T PRK04301 90 ELDELLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYID 143 (317)
T ss_pred HHHHHhcCCccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEe
Confidence 4455555454557899999999999999999998754221 13678887
No 270
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.56 E-value=0.022 Score=65.53 Aligned_cols=141 Identities=13% Similarity=0.087 Sum_probs=72.4
Q ss_pred hhhHhHhcCCCCeEEEEEEccCCCcHHHHHHHHHHHhhcc-----c-cceEEEEechhhhcccChHHHHHHHHHHHhccc
Q 003802 3 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ-----F-EASSFLANVREVSVTRGLVPLQEQLLSEVLMER 76 (794)
Q Consensus 3 ~l~~~l~~~~~~~~vi~i~G~~GvGKTtLa~~v~~~~~~~-----f-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 76 (794)
++.+.|.... ..-+.++|++|+|||++|+.+++++... + +..+|.. +.. .++. +.
T Consensus 197 ~~i~iL~r~~--~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l---------~~~----~lla---G~- 257 (758)
T PRK11034 197 RAIQVLCRRR--KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL---------DIG----SLLA---GT- 257 (758)
T ss_pred HHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec---------cHH----HHhc---cc-
Confidence 3444444432 2344689999999999999999865322 1 2233321 111 1110 00
Q ss_pred cccccchhhhHHHHHHHh-cCCeEEEEEcCCCCh----------HHHHH-HhcCCCCCCCCCEEEEEeCChhhhhh----
Q 003802 77 DLIIWDVHKGINLIRWRL-CRKRVLVILDDVDQL----------EQLQA-LVGNHDWFGFGSRIIITSRDEHVLKS---- 140 (794)
Q Consensus 77 ~~~~~~~~~~~~~l~~~l-~~~r~LlVlDd~~~~----------~~~~~-l~~~~~~~~~gs~IlvTtR~~~v~~~---- 140 (794)
....+.+.....+.+.+ +.++.+|++|+++.. .+... +.+.+. ...-+||-+|...++...
T Consensus 258 -~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~--~g~i~vIgATt~~E~~~~~~~D 334 (758)
T PRK11034 258 -KYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS--SGKIRVIGSTTYQEFSNIFEKD 334 (758)
T ss_pred -chhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHh--CCCeEEEecCChHHHHHHhhcc
Confidence 00112223333333333 346789999998643 12222 223221 122345545544433211
Q ss_pred ---cCcCcEEEcCCCChHhHHHHHHhhc
Q 003802 141 ---HGVTNTYKVRGLDYVEALQLFHLKV 165 (794)
Q Consensus 141 ---~~~~~~~~l~~L~~~ea~~lf~~~~ 165 (794)
...-..++++..+.++..++++...
T Consensus 335 ~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 335 RALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred HHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 1223478999999999999988643
No 271
>PRK10867 signal recognition particle protein; Provisional
Probab=96.55 E-value=0.023 Score=60.57 Aligned_cols=29 Identities=38% Similarity=0.433 Sum_probs=25.0
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHHHhhcc
Q 003802 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQ 42 (794)
Q Consensus 14 ~~~vi~i~G~~GvGKTtLa~~v~~~~~~~ 42 (794)
.+.+|.++|++|+||||.|.+++..++..
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~ 127 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKK 127 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHh
Confidence 36899999999999999999998866554
No 272
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=96.55 E-value=0.011 Score=63.99 Aligned_cols=49 Identities=24% Similarity=0.281 Sum_probs=36.3
Q ss_pred hhhhHhHhcCCCCeEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEE
Q 003802 2 EKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (794)
Q Consensus 2 ~~l~~~l~~~~~~~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~ 50 (794)
+++.+.|..+-..-.++.|.|.+|+|||||+.+++......-..++|++
T Consensus 81 ~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs 129 (454)
T TIGR00416 81 GELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVS 129 (454)
T ss_pred HHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence 4555666555455689999999999999999999876544334577876
No 273
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.54 E-value=0.0071 Score=59.80 Aligned_cols=92 Identities=22% Similarity=0.211 Sum_probs=52.6
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhhccccceEEEEechhhhcccChHHHHHHHHHHHhccccc---cccch--------h
Q 003802 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDL---IIWDV--------H 84 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~~~~~--------~ 84 (794)
+-++|.|.+|+|||+|++++++..+.+|+...++....+ +...+.+..+++...-...... ...+. .
T Consensus 70 Qr~~If~~~G~GKTtLa~~i~~~i~~~~~~~~V~~~iGe--r~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~~ 147 (274)
T cd01133 70 GKIGLFGGAGVGKTVLIMELINNIAKAHGGYSVFAGVGE--RTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARVA 147 (274)
T ss_pred CEEEEecCCCCChhHHHHHHHHHHHhcCCCEEEEEEecc--CcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 568899999999999999999988877766655543322 2223444444444321110000 00110 0
Q ss_pred hhHHHHHHHh---cCCeEEEEEcCCCCh
Q 003802 85 KGINLIRWRL---CRKRVLVILDDVDQL 109 (794)
Q Consensus 85 ~~~~~l~~~l---~~~r~LlVlDd~~~~ 109 (794)
...-.+.+++ +++..|+++||+-..
T Consensus 148 ~~a~~~AEyfr~~~g~~Vl~~~Dsltr~ 175 (274)
T cd01133 148 LTGLTMAEYFRDEEGQDVLLFIDNIFRF 175 (274)
T ss_pred HHHHHHHHHHHHhcCCeEEEEEeChhHH
Confidence 1112233444 389999999998544
No 274
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.52 E-value=0.025 Score=61.38 Aligned_cols=33 Identities=36% Similarity=0.431 Sum_probs=27.4
Q ss_pred CCCCeEEEEEEccCCCcHHHHHHHHHHHhhccc
Q 003802 11 GLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQF 43 (794)
Q Consensus 11 ~~~~~~vi~i~G~~GvGKTtLa~~v~~~~~~~f 43 (794)
+-..++=|.++|++|+|||++|+.+++..+-.|
T Consensus 464 Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nF 496 (693)
T KOG0730|consen 464 GISPPKGVLLYGPPGCGKTLLAKALANEAGMNF 496 (693)
T ss_pred cCCCCceEEEECCCCcchHHHHHHHhhhhcCCe
Confidence 334578888999999999999999999766555
No 275
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.52 E-value=0.032 Score=65.78 Aligned_cols=35 Identities=31% Similarity=0.291 Sum_probs=26.3
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhhccccceEEEE
Q 003802 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~ 50 (794)
.++.++|+.|+|||++|+.+++.....-...+.++
T Consensus 599 ~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id 633 (857)
T PRK10865 599 GSFLFLGPTGVGKTELCKALANFMFDSDDAMVRID 633 (857)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEE
Confidence 57889999999999999999986543333344554
No 276
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.51 E-value=0.017 Score=57.99 Aligned_cols=38 Identities=34% Similarity=0.388 Sum_probs=29.2
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEE
Q 003802 13 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (794)
Q Consensus 13 ~~~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~ 50 (794)
...++|.++|++|+||||++..++..++..-..+.+++
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~ 107 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAA 107 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEe
Confidence 34689999999999999999999986655433444554
No 277
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.50 E-value=0.0024 Score=60.93 Aligned_cols=102 Identities=23% Similarity=0.260 Sum_probs=51.3
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhhccccceEEEEechhhhcccChHHHHHHHHHHHhccccccccchhhhHHHHHHHh-
Q 003802 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWRL- 94 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l- 94 (794)
+++.|.|++|.|||++++.+...+...=..++++.- .. .....+....... .... ...+....
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~ap-----T~----~Aa~~L~~~~~~~----a~Ti---~~~l~~~~~ 82 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAP-----TN----KAAKELREKTGIE----AQTI---HSFLYRIPN 82 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEES-----SH----HHHHHHHHHHTS-----EEEH---HHHTTEECC
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECC-----cH----HHHHHHHHhhCcc----hhhH---HHHHhcCCc
Confidence 688899999999999999998866554223333321 11 1122222221110 0000 00000000
Q ss_pred --------cCCeEEEEEcCCCChH--HHHHHhcCCCCCCCCCEEEEEeCCh
Q 003802 95 --------CRKRVLVILDDVDQLE--QLQALVGNHDWFGFGSRIIITSRDE 135 (794)
Q Consensus 95 --------~~~r~LlVlDd~~~~~--~~~~l~~~~~~~~~gs~IlvTtR~~ 135 (794)
..++-++|+|++...+ .+..+..... ..|+++|+.==..
T Consensus 83 ~~~~~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~--~~~~klilvGD~~ 131 (196)
T PF13604_consen 83 GDDEGRPELPKKDVLIVDEASMVDSRQLARLLRLAK--KSGAKLILVGDPN 131 (196)
T ss_dssp EECCSSCC-TSTSEEEESSGGG-BHHHHHHHHHHS---T-T-EEEEEE-TT
T ss_pred ccccccccCCcccEEEEecccccCHHHHHHHHHHHH--hcCCEEEEECCcc
Confidence 1334599999996654 4666666544 3577887765543
No 278
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.50 E-value=0.041 Score=56.79 Aligned_cols=69 Identities=10% Similarity=0.077 Sum_probs=39.7
Q ss_pred CCeEEEEEcCCCChHH--HHHHhcCCCCCCCCCEEEEEeCCh-hhhhhc-CcCcEEEcCCCChHhHHHHHHhh
Q 003802 96 RKRVLVILDDVDQLEQ--LQALVGNHDWFGFGSRIIITSRDE-HVLKSH-GVTNTYKVRGLDYVEALQLFHLK 164 (794)
Q Consensus 96 ~~r~LlVlDd~~~~~~--~~~l~~~~~~~~~gs~IlvTtR~~-~v~~~~-~~~~~~~l~~L~~~ea~~lf~~~ 164 (794)
+++-++|+|+++..+. ...+...+.....++.+|++|.+. .+.... .....+++.+++.+++.+.+.+.
T Consensus 112 ~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~ 184 (325)
T PRK08699 112 GGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRER 184 (325)
T ss_pred CCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhc
Confidence 3444556688866532 333333222122456566666654 343322 23457889999999999888654
No 279
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.47 E-value=0.026 Score=59.33 Aligned_cols=27 Identities=30% Similarity=0.324 Sum_probs=23.9
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHHHhh
Q 003802 14 DVRFIGICGMGGIGKTTLAKVLYNTLK 40 (794)
Q Consensus 14 ~~~vi~i~G~~GvGKTtLa~~v~~~~~ 40 (794)
..++|.++|+.|+||||.+.+++..+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~ 199 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYG 199 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 368999999999999999999988654
No 280
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.47 E-value=0.0043 Score=58.60 Aligned_cols=117 Identities=21% Similarity=0.261 Sum_probs=52.0
Q ss_pred eEEEEEEccCCCcHHHHHHHHHH-Hh-hccccceEEEEechhhhccc-----ChHHHHHHHHHHHhccccccccchhhhH
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYN-TL-KDQFEASSFLANVREVSVTR-----GLVPLQEQLLSEVLMERDLIIWDVHKGI 87 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~-~~-~~~f~~~~~~~~~~~~~~~~-----~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 87 (794)
..++.+.|++|.|||.||.+.+- .+ .+.|+.++++.-...+...- +..+-..-....+...... ....+...
T Consensus 19 ~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~~p~~d~l~~-~~~~~~~~ 97 (205)
T PF02562_consen 19 NDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYLRPIYDALEE-LFGKEKLE 97 (205)
T ss_dssp -SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS---------TTTHHHHHHHTT-TS-TTCHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHHHHHHHHHHHH-HhChHhHH
Confidence 45899999999999999998876 33 46677777764221111100 0000000000000000000 00011111
Q ss_pred HHHH---------HHhcCC---eEEEEEcCCCChH--HHHHHhcCCCCCCCCCEEEEEeCCh
Q 003802 88 NLIR---------WRLCRK---RVLVILDDVDQLE--QLQALVGNHDWFGFGSRIIITSRDE 135 (794)
Q Consensus 88 ~~l~---------~~l~~~---r~LlVlDd~~~~~--~~~~l~~~~~~~~~gs~IlvTtR~~ 135 (794)
..+. .+++|+ ...+|+|++.+.. ++..++... +.+|||+++=-..
T Consensus 98 ~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR~---g~~skii~~GD~~ 156 (205)
T PF02562_consen 98 ELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILTRI---GEGSKIIITGDPS 156 (205)
T ss_dssp HHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTTB----TT-EEEEEE---
T ss_pred HHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHccc---CCCcEEEEecCce
Confidence 1111 234554 4699999997764 577777664 5899999987654
No 281
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.47 E-value=0.012 Score=53.00 Aligned_cols=103 Identities=23% Similarity=0.269 Sum_probs=53.7
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhhccccceEEEEechhhhcccChHHHHHHHHHHHhccccccccchhhhHHHHHHHhc
Q 003802 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWRLC 95 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~ 95 (794)
.+++|.|+.|.|||||++.++...+ .....+++.....+...+. ....+...-.+.+.+.
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~-~~~G~i~~~~~~~i~~~~~-------------------lS~G~~~rv~laral~ 86 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGELE-PDEGIVTWGSTVKIGYFEQ-------------------LSGGEKMRLALAKLLL 86 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCC-CCceEEEECCeEEEEEEcc-------------------CCHHHHHHHHHHHHHh
Confidence 5899999999999999999987432 2234444431100100000 0011112223444555
Q ss_pred CCeEEEEEcCCC---ChHHHHHHhcCCCCCCCCCEEEEEeCChhhhhh
Q 003802 96 RKRVLVILDDVD---QLEQLQALVGNHDWFGFGSRIIITSRDEHVLKS 140 (794)
Q Consensus 96 ~~r~LlVlDd~~---~~~~~~~l~~~~~~~~~gs~IlvTtR~~~v~~~ 140 (794)
.++-++++|+.. +......+...+... +..||++|........
T Consensus 87 ~~p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~~ 132 (144)
T cd03221 87 ENPNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLDQ 132 (144)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHH
Confidence 677789999863 222222222222111 2467888877654433
No 282
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=96.46 E-value=0.027 Score=65.98 Aligned_cols=30 Identities=30% Similarity=0.542 Sum_probs=25.3
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHHHhhccc
Q 003802 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQF 43 (794)
Q Consensus 14 ~~~vi~i~G~~GvGKTtLa~~v~~~~~~~f 43 (794)
..+++.++|++|+|||++|+.+++.....|
T Consensus 346 ~~~~lll~GppG~GKT~lAk~iA~~l~~~~ 375 (775)
T TIGR00763 346 KGPILCLVGPPGVGKTSLGKSIAKALNRKF 375 (775)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhcCCe
Confidence 345899999999999999999999775443
No 283
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.45 E-value=0.0079 Score=69.61 Aligned_cols=137 Identities=17% Similarity=0.180 Sum_probs=70.9
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEEechhhhcccChHHHHHHHHHHHhccccccccchhhhHHHHHHH
Q 003802 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWR 93 (794)
Q Consensus 14 ~~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~ 93 (794)
...+++++|++|+||||+|+.++......|-. +. .....+...+...- +...+. ......+.+..
T Consensus 348 ~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~---i~----~~~~~d~~~i~g~~-~~~~g~------~~G~~~~~l~~- 412 (784)
T PRK10787 348 KGPILCLVGPPGVGKTSLGQSIAKATGRKYVR---MA----LGGVRDEAEIRGHR-RTYIGS------MPGKLIQKMAK- 412 (784)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCEEE---EE----cCCCCCHHHhccch-hccCCC------CCcHHHHHHHh-
Confidence 34689999999999999999999876544322 21 11111211111000 000000 11122233332
Q ss_pred hcCCeEEEEEcCCCChHH------HHHHhcCCCCC---------------CCCCEEEEEeCChhhhhh-cCcCcEEEcCC
Q 003802 94 LCRKRVLVILDDVDQLEQ------LQALVGNHDWF---------------GFGSRIIITSRDEHVLKS-HGVTNTYKVRG 151 (794)
Q Consensus 94 l~~~r~LlVlDd~~~~~~------~~~l~~~~~~~---------------~~gs~IlvTtR~~~v~~~-~~~~~~~~l~~ 151 (794)
.....-++++|.++.... .+.+...+... -....+|.|+.+..+... ......+++.+
T Consensus 413 ~~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~~i~~aLl~R~~ii~~~~ 492 (784)
T PRK10787 413 VGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMNIPAPLLDRMEVIRLSG 492 (784)
T ss_pred cCCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEEEEcCCCCCCCHHHhcceeeeecCC
Confidence 222345788999854421 24444433211 123334445544333222 23445789999
Q ss_pred CChHhHHHHHHhhc
Q 003802 152 LDYVEALQLFHLKV 165 (794)
Q Consensus 152 L~~~ea~~lf~~~~ 165 (794)
++++|-.++.+++.
T Consensus 493 ~t~eek~~Ia~~~L 506 (784)
T PRK10787 493 YTEDEKLNIAKRHL 506 (784)
T ss_pred CCHHHHHHHHHHhh
Confidence 99999998887765
No 284
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.43 E-value=0.011 Score=66.58 Aligned_cols=97 Identities=20% Similarity=0.214 Sum_probs=58.8
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEEechhhhcccChHHHHHHHHHHHhccccccccchhhhHHHHHHH
Q 003802 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWR 93 (794)
Q Consensus 14 ~~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~ 93 (794)
...+....||.|||||.||++++..+-+.=+..+-++ +|.. ..+.-.+.+.+...... ..++ ...+-+.
T Consensus 520 PigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~D----MSEy-----~EkHsVSrLIGaPPGYV-Gyee-GG~LTEa 588 (786)
T COG0542 520 PIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRID----MSEY-----MEKHSVSRLIGAPPGYV-GYEE-GGQLTEA 588 (786)
T ss_pred CceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeec----hHHH-----HHHHHHHHHhCCCCCCc-eecc-ccchhHh
Confidence 3578888999999999999999996543334455555 2221 12334444443332221 1122 3445556
Q ss_pred hcCCeE-EEEEcCCCC--hHHHHHHhcCCCC
Q 003802 94 LCRKRV-LVILDDVDQ--LEQLQALVGNHDW 121 (794)
Q Consensus 94 l~~~r~-LlVlDd~~~--~~~~~~l~~~~~~ 121 (794)
.+.++| ++.||+++. .+..+-++..+.+
T Consensus 589 VRr~PySViLlDEIEKAHpdV~nilLQVlDd 619 (786)
T COG0542 589 VRRKPYSVILLDEIEKAHPDVFNLLLQVLDD 619 (786)
T ss_pred hhcCCCeEEEechhhhcCHHHHHHHHHHhcC
Confidence 667877 777999954 4556767666643
No 285
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.43 E-value=0.014 Score=52.97 Aligned_cols=56 Identities=9% Similarity=0.165 Sum_probs=36.3
Q ss_pred HHHHHHHhcCCeEEEEEcC----CCChHHHHHHhcCCCCCCCCCEEEEEeCChhhhhhcC
Q 003802 87 INLIRWRLCRKRVLVILDD----VDQLEQLQALVGNHDWFGFGSRIIITSRDEHVLKSHG 142 (794)
Q Consensus 87 ~~~l~~~l~~~r~LlVlDd----~~~~~~~~~l~~~~~~~~~gs~IlvTtR~~~v~~~~~ 142 (794)
...|.+.+-+++-+|+-|. ++....|+-+.-.-.-+..|..|+++|-+..+...+.
T Consensus 145 RvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 145 RVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred HHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhcc
Confidence 3446666678999999995 4444444433221112356999999999988766654
No 286
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.43 E-value=0.057 Score=52.15 Aligned_cols=189 Identities=15% Similarity=0.201 Sum_probs=102.0
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHHHHhhc------cccceEEEEechh------hhccc-----------ChHHHHHHHH
Q 003802 13 DDVRFIGICGMGGIGKTTLAKVLYNTLKD------QFEASSFLANVRE------VSVTR-----------GLVPLQEQLL 69 (794)
Q Consensus 13 ~~~~vi~i~G~~GvGKTtLa~~v~~~~~~------~f~~~~~~~~~~~------~~~~~-----------~~~~~~~~i~ 69 (794)
.+.+-..++|+.|.||-|.+..+.+..-+ +-+...|...... +++.. .-+-+.++++
T Consensus 32 ~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlEitPSDaG~~DRvViQell 111 (351)
T KOG2035|consen 32 GDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELL 111 (351)
T ss_pred CCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEEeChhhcCcccHHHHHHHH
Confidence 45778889999999999999888774311 2233344321100 01000 1122334444
Q ss_pred HHHhccccccccchhhhHHHHHHHhcCCeE-EEEEcCCCCh--HHHHHHhcCCCCCCCCCEEEEEeCCh-hhhhhc-CcC
Q 003802 70 SEVLMERDLIIWDVHKGINLIRWRLCRKRV-LVILDDVDQL--EQLQALVGNHDWFGFGSRIIITSRDE-HVLKSH-GVT 144 (794)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~r~-LlVlDd~~~~--~~~~~l~~~~~~~~~gs~IlvTtR~~-~v~~~~-~~~ 144 (794)
+++.+..... ...++.| ++|+..++.. +.-.+++.........+|+|+...+. .+.... +..
T Consensus 112 KevAQt~qie-------------~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~RlIl~cns~SriIepIrSRC 178 (351)
T KOG2035|consen 112 KEVAQTQQIE-------------TQGQRPFKVVVINEADELTRDAQHALRRTMEKYSSNCRLILVCNSTSRIIEPIRSRC 178 (351)
T ss_pred HHHHhhcchh-------------hccccceEEEEEechHhhhHHHHHHHHHHHHHHhcCceEEEEecCcccchhHHhhhe
Confidence 4433222110 1113344 5556666544 23444444333334567777654432 122222 223
Q ss_pred cEEEcCCCChHhHHHHHHhhccCCCCCChhHHHHHHHHHHHhCCCchHHHHHhhhhc--C---------CChHHHHHHHH
Q 003802 145 NTYKVRGLDYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIEVLGSFLC--G---------RSVEEWKSALN 213 (794)
Q Consensus 145 ~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~a~~L~--~---------~~~~~w~~~l~ 213 (794)
-.+++...+++|....+.+.+-.+. -....+.+.+|+++++|.-.-...+....+ + -..-+|+-++.
T Consensus 179 l~iRvpaps~eeI~~vl~~v~~kE~--l~lp~~~l~rIa~kS~~nLRrAllmlE~~~~~n~~~~a~~~~i~~~dWe~~i~ 256 (351)
T KOG2035|consen 179 LFIRVPAPSDEEITSVLSKVLKKEG--LQLPKELLKRIAEKSNRNLRRALLMLEAVRVNNEPFTANSQVIPKPDWEIYIQ 256 (351)
T ss_pred eEEeCCCCCHHHHHHHHHHHHHHhc--ccCcHHHHHHHHHHhcccHHHHHHHHHHHHhccccccccCCCCCCccHHHHHH
Confidence 3789999999999999988773322 223367899999999997544333322221 1 13557988887
Q ss_pred HHH
Q 003802 214 RLQ 216 (794)
Q Consensus 214 ~l~ 216 (794)
.+.
T Consensus 257 e~a 259 (351)
T KOG2035|consen 257 EIA 259 (351)
T ss_pred HHH
Confidence 643
No 287
>PRK08233 hypothetical protein; Provisional
Probab=96.43 E-value=0.0074 Score=57.09 Aligned_cols=26 Identities=42% Similarity=0.576 Sum_probs=23.4
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhh
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNTLK 40 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~~~ 40 (794)
..+|+|.|.+|+||||+|+.++..+.
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 47999999999999999999998764
No 288
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.41 E-value=0.028 Score=59.04 Aligned_cols=25 Identities=28% Similarity=0.255 Sum_probs=22.4
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHh
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNTL 39 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~~ 39 (794)
..+|.++|++|+||||++.+++...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4789999999999999999998754
No 289
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.41 E-value=0.00014 Score=69.38 Aligned_cols=96 Identities=19% Similarity=0.193 Sum_probs=59.5
Q ss_pred cceeeeecCCCCCCCCCCCCCCceEEEcCCCCcccccccccccccCceeccCCCcCccCCC--CCCCCCCCCEEeccccc
Q 003802 380 LRYLKWHEYPFNSLPVSFRPEKLFKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLIRTP--DFTGVPNLERLNLEGCT 457 (794)
Q Consensus 380 l~~L~~~~~~~~~l~~~~~~~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~n~~~~~~~--~~~~l~~L~~L~l~~~~ 457 (794)
.+.|++-++.++++...-.++.|++|.|+-|.|+++. .+..|++|+.|+|..|.+..... .+.++|+|++|.|..|.
T Consensus 21 vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENP 99 (388)
T KOG2123|consen 21 VKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENP 99 (388)
T ss_pred hhhhcccCCCccHHHHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCC
Confidence 3444444445555544446777888888888888773 36778888888888876543322 26677777777777765
Q ss_pred cccccc-----ccccCcccccccc
Q 003802 458 RLLEVH-----QSVGTLKRLILLN 476 (794)
Q Consensus 458 ~~~~~~-----~~~~~l~~L~~L~ 476 (794)
-.+.-+ ..+.-|++|+.||
T Consensus 100 Cc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 100 CCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred cccccchhHHHHHHHHcccchhcc
Confidence 444333 1234456666665
No 290
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.40 E-value=0.014 Score=52.56 Aligned_cols=24 Identities=50% Similarity=0.693 Sum_probs=21.3
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhh
Q 003802 17 FIGICGMGGIGKTTLAKVLYNTLK 40 (794)
Q Consensus 17 vi~i~G~~GvGKTtLa~~v~~~~~ 40 (794)
+|.+.|++|+||||+|+.+.....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Confidence 688999999999999999987644
No 291
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=96.40 E-value=0.005 Score=56.97 Aligned_cols=36 Identities=28% Similarity=0.240 Sum_probs=30.2
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhh-ccccceEEEE
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNTLK-DQFEASSFLA 50 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~~~-~~f~~~~~~~ 50 (794)
..++.+.|+.|+|||.+|+.+++.+. +.....+-++
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d 39 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRID 39 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEE
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHh
Confidence 46889999999999999999999877 5666666666
No 292
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.39 E-value=0.032 Score=53.20 Aligned_cols=128 Identities=21% Similarity=0.228 Sum_probs=68.7
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEEechhhhcccChHHHHHHHHHHHhccccccccchhhhHHHHH-H
Q 003802 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIR-W 92 (794)
Q Consensus 14 ~~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~-~ 92 (794)
.++.|..+|++|.|||.+|+.+++..+--| +. +. ..+++....+ |....+.++- +
T Consensus 150 APknVLFyGppGTGKTm~Akalane~kvp~-----l~----vk--------at~liGehVG-------dgar~Ihely~r 205 (368)
T COG1223 150 APKNVLFYGPPGTGKTMMAKALANEAKVPL-----LL----VK--------ATELIGEHVG-------DGARRIHELYER 205 (368)
T ss_pred CcceeEEECCCCccHHHHHHHHhcccCCce-----EE----ec--------hHHHHHHHhh-------hHHHHHHHHHHH
Confidence 378999999999999999999999754322 22 11 1122222111 1111122222 2
Q ss_pred HhcCCeEEEEEcCCCChH--------------HHHHHhcCCCC--CCCCCEEEEEeCChhhh-hhcCc--CcEEEcCCCC
Q 003802 93 RLCRKRVLVILDDVDQLE--------------QLQALVGNHDW--FGFGSRIIITSRDEHVL-KSHGV--TNTYKVRGLD 153 (794)
Q Consensus 93 ~l~~~r~LlVlDd~~~~~--------------~~~~l~~~~~~--~~~gs~IlvTtR~~~v~-~~~~~--~~~~~l~~L~ 153 (794)
.-+.-+|.+++|.++... ...+++..+.. .+.|..-|-+|...... ..... ...++..--+
T Consensus 206 A~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~~LD~aiRsRFEeEIEF~LP~ 285 (368)
T COG1223 206 ARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAATNRPELLDPAIRSRFEEEIEFKLPN 285 (368)
T ss_pred HHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEeecCChhhcCHHHHhhhhheeeeeCCC
Confidence 223468999999875442 24555554432 23454444444443322 22221 2345555556
Q ss_pred hHhHHHHHHhhc
Q 003802 154 YVEALQLFHLKV 165 (794)
Q Consensus 154 ~~ea~~lf~~~~ 165 (794)
++|-..++...+
T Consensus 286 ~eEr~~ile~y~ 297 (368)
T COG1223 286 DEERLEILEYYA 297 (368)
T ss_pred hHHHHHHHHHHH
Confidence 778888877766
No 293
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.39 E-value=0.035 Score=52.50 Aligned_cols=23 Identities=22% Similarity=0.277 Sum_probs=21.2
Q ss_pred EEEEEccCCCcHHHHHHHHHHHh
Q 003802 17 FIGICGMGGIGKTTLAKVLYNTL 39 (794)
Q Consensus 17 vi~i~G~~GvGKTtLa~~v~~~~ 39 (794)
||.|.|++|+||||+|+.+++++
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58899999999999999999875
No 294
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.38 E-value=0.014 Score=68.52 Aligned_cols=28 Identities=29% Similarity=0.338 Sum_probs=23.9
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhhcc
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQ 42 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~~~~~ 42 (794)
..++.++|+.|+|||.+|+.+++.+-+.
T Consensus 596 ~~~~lf~Gp~GvGKT~lA~~La~~l~~~ 623 (852)
T TIGR03345 596 LGVFLLVGPSGVGKTETALALAELLYGG 623 (852)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHhCC
Confidence 4689999999999999999999866433
No 295
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=96.37 E-value=0.013 Score=58.29 Aligned_cols=97 Identities=22% Similarity=0.153 Sum_probs=56.5
Q ss_pred hHhHhcCCCCeEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEEechhhhcccChHHHHHHHHHH----Hhccccccc
Q 003802 5 NGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSE----VLMERDLII 80 (794)
Q Consensus 5 ~~~l~~~~~~~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~----~~~~~~~~~ 80 (794)
.++|--+-+.-+++=|+|+.|.||||+|.+++-..+..-..++|++..+. .+. .-..++... +........
T Consensus 50 D~~LGGGl~~g~ItEiyG~~gsGKT~lal~~~~~aq~~g~~a~fIDtE~~----l~p-~r~~~l~~~~~d~l~v~~~~~~ 124 (279)
T COG0468 50 DEALGGGLPRGRITEIYGPESSGKTTLALQLVANAQKPGGKAAFIDTEHA----LDP-ERAKQLGVDLLDNLLVSQPDTG 124 (279)
T ss_pred HHHhcCCcccceEEEEecCCCcchhhHHHHHHHHhhcCCCeEEEEeCCCC----CCH-HHHHHHHHhhhcceeEecCCCH
Confidence 34444444567899999999999999999988766655568899984332 222 122333332 111222222
Q ss_pred cchhhhHHHHHHHhcCCeEEEEEcCC
Q 003802 81 WDVHKGINLIRWRLCRKRVLVILDDV 106 (794)
Q Consensus 81 ~~~~~~~~~l~~~l~~~r~LlVlDd~ 106 (794)
....+.++.+.+....+--|+|+|.+
T Consensus 125 e~q~~i~~~~~~~~~~~i~LvVVDSv 150 (279)
T COG0468 125 EQQLEIAEKLARSGAEKIDLLVVDSV 150 (279)
T ss_pred HHHHHHHHHHHHhccCCCCEEEEecC
Confidence 22223333444444444679999987
No 296
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.37 E-value=0.021 Score=54.50 Aligned_cols=26 Identities=54% Similarity=0.726 Sum_probs=23.4
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhhcc
Q 003802 17 FIGICGMGGIGKTTLAKVLYNTLKDQ 42 (794)
Q Consensus 17 vi~i~G~~GvGKTtLa~~v~~~~~~~ 42 (794)
||+|.|++|+||||+|++++..+...
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~ 26 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKR 26 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTC
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCcc
Confidence 79999999999999999999977643
No 297
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=96.37 E-value=0.053 Score=59.34 Aligned_cols=141 Identities=15% Similarity=0.180 Sum_probs=80.3
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHHHHhh-----c---cccceEEEEechhhhcccChHHHHHHHHHHHhccccccccchh
Q 003802 13 DDVRFIGICGMGGIGKTTLAKVLYNTLK-----D---QFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVH 84 (794)
Q Consensus 13 ~~~~vi~i~G~~GvGKTtLa~~v~~~~~-----~---~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 84 (794)
.....+.|.|-+|.|||+.+..|.+..+ . .|++ +.+. .-.-....++...|...+-+... .+.
T Consensus 420 ~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~y-veIN----gm~l~~~~~~Y~~I~~~lsg~~~----~~~ 490 (767)
T KOG1514|consen 420 GLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDY-VEIN----GLRLASPREIYEKIWEALSGERV----TWD 490 (767)
T ss_pred CCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccE-EEEc----ceeecCHHHHHHHHHHhcccCcc----cHH
Confidence 3456999999999999999999998443 1 2332 2333 22233456666777766544443 333
Q ss_pred hhHHHHHHHhc-----CCeEEEEEcCCCChHH-----HHHHhcCCCCCCCCCEEEEEeC-Ch-----h-----hhhhcCc
Q 003802 85 KGINLIRWRLC-----RKRVLVILDDVDQLEQ-----LQALVGNHDWFGFGSRIIITSR-DE-----H-----VLKSHGV 143 (794)
Q Consensus 85 ~~~~~l~~~l~-----~~r~LlVlDd~~~~~~-----~~~l~~~~~~~~~gs~IlvTtR-~~-----~-----v~~~~~~ 143 (794)
..++.+..+.. .+.+++++|+++..-. +-.+..- ...++++++|-+= +. . +...++
T Consensus 491 ~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdW--pt~~~sKLvvi~IaNTmdlPEr~l~nrvsSRlg- 567 (767)
T KOG1514|consen 491 AALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDW--PTLKNSKLVVIAIANTMDLPERLLMNRVSSRLG- 567 (767)
T ss_pred HHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcC--CcCCCCceEEEEecccccCHHHHhccchhhhcc-
Confidence 34444444443 4578999999865422 2222111 1235777665432 11 1 111111
Q ss_pred CcEEEcCCCChHhHHHHHHhhc
Q 003802 144 TNTYKVRGLDYVEALQLFHLKV 165 (794)
Q Consensus 144 ~~~~~l~~L~~~ea~~lf~~~~ 165 (794)
-..+...+.+.++-.++...+.
T Consensus 568 ~tRi~F~pYth~qLq~Ii~~RL 589 (767)
T KOG1514|consen 568 LTRICFQPYTHEQLQEIISARL 589 (767)
T ss_pred ceeeecCCCCHHHHHHHHHHhh
Confidence 2356777888888888877766
No 298
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.37 E-value=0.017 Score=58.60 Aligned_cols=28 Identities=29% Similarity=0.294 Sum_probs=24.2
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHHHhhc
Q 003802 14 DVRFIGICGMGGIGKTTLAKVLYNTLKD 41 (794)
Q Consensus 14 ~~~vi~i~G~~GvGKTtLa~~v~~~~~~ 41 (794)
..++|+|+|++|+||||++..++..+..
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~ 220 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVL 220 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3579999999999999999999886543
No 299
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=96.36 E-value=0.0089 Score=62.37 Aligned_cols=102 Identities=15% Similarity=0.225 Sum_probs=58.2
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEEechhhhcccChHHHHHHHHHHHhccccccccchhhhHHHHHHH
Q 003802 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWR 93 (794)
Q Consensus 14 ~~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~ 93 (794)
..+=+.|||..|.|||.|.-.+|+.+...-..++.+. .-+.++.+.+-+. . .....+..+.+.
T Consensus 61 ~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh--------~Fm~~vh~~l~~~-~--------~~~~~l~~va~~ 123 (362)
T PF03969_consen 61 PPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFH--------EFMLDVHSRLHQL-R--------GQDDPLPQVADE 123 (362)
T ss_pred CCceEEEECCCCCchhHHHHHHHHhCCcccccccccc--------HHHHHHHHHHHHH-h--------CCCccHHHHHHH
Confidence 4677899999999999999999996543222222222 1122222333222 1 112335556666
Q ss_pred hcCCeEEEEEcCC--CChHH---HHHHhcCCCCCCCCCEEEEEeCCh
Q 003802 94 LCRKRVLVILDDV--DQLEQ---LQALVGNHDWFGFGSRIIITSRDE 135 (794)
Q Consensus 94 l~~~r~LlVlDd~--~~~~~---~~~l~~~~~~~~~gs~IlvTtR~~ 135 (794)
+.++..||.||++ .+..+ +..+...+- ..|. |+|+|.+.
T Consensus 124 l~~~~~lLcfDEF~V~DiaDAmil~rLf~~l~--~~gv-vlVaTSN~ 167 (362)
T PF03969_consen 124 LAKESRLLCFDEFQVTDIADAMILKRLFEALF--KRGV-VLVATSNR 167 (362)
T ss_pred HHhcCCEEEEeeeeccchhHHHHHHHHHHHHH--HCCC-EEEecCCC
Confidence 7778889999986 34433 444444433 3455 55555543
No 300
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.34 E-value=0.025 Score=52.74 Aligned_cols=35 Identities=26% Similarity=0.355 Sum_probs=26.0
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEE
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~ 50 (794)
-.+++|.|+.|.|||||.+.++-..+ .....+++.
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~G~~~-~~~G~i~~~ 62 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLRLYD-PTSGEILID 62 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCCC-CCCCEEEEC
Confidence 35899999999999999999987433 234445543
No 301
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=96.32 E-value=0.0025 Score=57.04 Aligned_cols=38 Identities=26% Similarity=0.260 Sum_probs=26.4
Q ss_pred hhhhHhHhcCCCCeEEEEEEccCCCcHHHHHHHHHHHh
Q 003802 2 EKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTL 39 (794)
Q Consensus 2 ~~l~~~l~~~~~~~~vi~i~G~~GvGKTtLa~~v~~~~ 39 (794)
+++.+.+..-......|.|+|..|+||+++|+.+.+..
T Consensus 8 ~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~ 45 (138)
T PF14532_consen 8 RRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYS 45 (138)
T ss_dssp HHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTT
T ss_pred HHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhc
Confidence 44555555432333567899999999999999888853
No 302
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.32 E-value=0.042 Score=49.75 Aligned_cols=24 Identities=38% Similarity=0.581 Sum_probs=21.6
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhh
Q 003802 17 FIGICGMGGIGKTTLAKVLYNTLK 40 (794)
Q Consensus 17 vi~i~G~~GvGKTtLa~~v~~~~~ 40 (794)
||.|+|.+|+||||+|+.+.....
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~ 24 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLF 24 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999998764
No 303
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=96.28 E-value=0.0061 Score=70.40 Aligned_cols=112 Identities=15% Similarity=0.153 Sum_probs=58.8
Q ss_pred CCeEEEEEcCCCC---hHHH----HHHhcCCCCCCCCCEEEEEeCChhhhhhcCcCcEEEcCC--CChHhHHHHHHhhcc
Q 003802 96 RKRVLVILDDVDQ---LEQL----QALVGNHDWFGFGSRIIITSRDEHVLKSHGVTNTYKVRG--LDYVEALQLFHLKVS 166 (794)
Q Consensus 96 ~~r~LlVlDd~~~---~~~~----~~l~~~~~~~~~gs~IlvTtR~~~v~~~~~~~~~~~l~~--L~~~ea~~lf~~~~~ 166 (794)
..+-|+++|..-. ..+. ..+...+. ..|+.+|+||-...+.........+.-.. ++. +... +.-+..
T Consensus 401 ~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~--~~g~~viitTH~~eL~~~~~~~~~v~~~~~~~d~-~~l~-p~Ykl~ 476 (771)
T TIGR01069 401 TENSLVLFDELGAGTDPDEGSALAISILEYLL--KQNAQVLITTHYKELKALMYNNEGVENASVLFDE-ETLS-PTYKLL 476 (771)
T ss_pred CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHHhcCCCCeEEeEEEEcC-CCCc-eEEEEC
Confidence 4789999999733 2222 22333322 35789999999877644322211111111 111 1111 111111
Q ss_pred CCCCCChhHHHHHHHHHHHhCCCchHHHHHhhhhcCCChHHHHHHHHHHH
Q 003802 167 NGKQPTDYRVELSKYVVNYAGGLPLAIEVLGSFLCGRSVEEWKSALNRLQ 216 (794)
Q Consensus 167 ~~~~~~~~~~~~~~~i~~~~~g~Plai~~~a~~L~~~~~~~w~~~l~~l~ 216 (794)
.+... ...|-+|++++ |+|-.+..-|..+......++...++.+.
T Consensus 477 ~G~~g----~S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~~L~ 521 (771)
T TIGR01069 477 KGIPG----ESYAFEIAQRY-GIPHFIIEQAKTFYGEFKEEINVLIEKLS 521 (771)
T ss_pred CCCCC----CcHHHHHHHHh-CcCHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 11111 23577788888 89988888888776544455666665544
No 304
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.26 E-value=0.0077 Score=54.06 Aligned_cols=36 Identities=33% Similarity=0.301 Sum_probs=30.0
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEE
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~ 50 (794)
..||-|+|.+|+||||||+++.+++.+.-..+.+++
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEec
Confidence 368999999999999999999998887766666665
No 305
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=96.25 E-value=0.034 Score=63.40 Aligned_cols=127 Identities=18% Similarity=0.198 Sum_probs=67.8
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhhccccceEEEEechhhhcccChHHHHHHHHHHHhccccccccchhhhHHHHHHHhc
Q 003802 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWRLC 95 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~ 95 (794)
+-|.|+|++|+|||++|+.++....-.| +.+.. + ++.. ... .. ........+....+
T Consensus 186 ~gill~G~~G~GKt~~~~~~a~~~~~~f---~~is~----~---~~~~---~~~----g~------~~~~~~~~f~~a~~ 242 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKAIAGEAKVPF---FTISG----S---DFVE---MFV----GV------GASRVRDMFEQAKK 242 (644)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHcCCCE---EEEeh----H---HhHH---hhh----cc------cHHHHHHHHHHHHh
Confidence 3488999999999999999998765433 22221 0 1110 000 00 00111222222333
Q ss_pred CCeEEEEEcCCCChH----------------HHHHHhcCCCC--CCCCCEEEEEeCChhhhh-hc----CcCcEEEcCCC
Q 003802 96 RKRVLVILDDVDQLE----------------QLQALVGNHDW--FGFGSRIIITSRDEHVLK-SH----GVTNTYKVRGL 152 (794)
Q Consensus 96 ~~r~LlVlDd~~~~~----------------~~~~l~~~~~~--~~~gs~IlvTtR~~~v~~-~~----~~~~~~~l~~L 152 (794)
..++++++|+++... ....++..+.. ...+..||.||....... .. .-...+.+..-
T Consensus 243 ~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~P 322 (644)
T PRK10733 243 AAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLP 322 (644)
T ss_pred cCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCC
Confidence 568899999986541 12233222221 123445555666544322 11 12456777777
Q ss_pred ChHhHHHHHHhhc
Q 003802 153 DYVEALQLFHLKV 165 (794)
Q Consensus 153 ~~~ea~~lf~~~~ 165 (794)
+.++-.++++...
T Consensus 323 d~~~R~~Il~~~~ 335 (644)
T PRK10733 323 DVRGREQILKVHM 335 (644)
T ss_pred CHHHHHHHHHHHh
Confidence 7777888887765
No 306
>COG5635 Predicted NTPase (NACHT family) [Signal transduction mechanisms]
Probab=96.25 E-value=0.04 Score=65.01 Aligned_cols=193 Identities=16% Similarity=0.135 Sum_probs=98.8
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhhcc-c---cceEEEEechhhhcccChHH-HHHHHHHHHhccccccccchhhhHHHH
Q 003802 16 RFIGICGMGGIGKTTLAKVLYNTLKDQ-F---EASSFLANVREVSVTRGLVP-LQEQLLSEVLMERDLIIWDVHKGINLI 90 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~~~~~~-f---~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~l 90 (794)
.-+.|+|.+|.||||....++-....+ + +..+++.............+ .+.+.+......... ........
T Consensus 223 ~~~~Ilg~pGsGKTtfl~~lA~~~~~~~~~~~~vpi~~~l~~~~~~~~~~~q~~~~~~l~~~~~~~~~----~~~~~~~~ 298 (824)
T COG5635 223 AKLLILGAPGSGKTTFLQRLALWLAQRTLEPEDVPIFLLLNAFALARKFEKQLSLIDYLAEELFSQGI----AKQLIEAH 298 (824)
T ss_pred hheeeecCCCCCceehHHHHHHHhccCcCCcccCceeeechhHHHhhhhHhhccHHHHHHHHHhccCC----cchhhHHH
Confidence 468899999999999999998743222 2 23344432211111111111 122222221111111 11122223
Q ss_pred HHHhcCCeEEEEEcCCCChHH---------HHHHhcCCCCCCCCCEEEEEeCChhhhhhcCcCcEEEcCCCChHhHHHHH
Q 003802 91 RWRLCRKRVLVILDDVDQLEQ---------LQALVGNHDWFGFGSRIIITSRDEHVLKSHGVTNTYKVRGLDYVEALQLF 161 (794)
Q Consensus 91 ~~~l~~~r~LlVlDd~~~~~~---------~~~l~~~~~~~~~gs~IlvTtR~~~v~~~~~~~~~~~l~~L~~~ea~~lf 161 (794)
.+.++..++++++|+++.... +..+.+. -+.+.||+|+|....-.....-..+++..+.++.-....
T Consensus 299 ~e~l~~g~~llLlDGlDe~~~~~~~~~~~~i~~f~~~----~~~~~~iltcR~~~~~~~~~~f~~~ei~~~~~~~i~~~~ 374 (824)
T COG5635 299 QELLKTGKLLLLLDGLDELEPKNQRALIREINKFLQE----YPDAQVLLTCRPDTYKEEFKGFAVFEIYKFLDLQINQFI 374 (824)
T ss_pred HHHHhccchhhHhhccchhhhhhHHHHHHHHHHHhhh----ccCCeEEEEeccchhhhhhhhhhhccchhhhHHHHHHHH
Confidence 578889999999999987743 3333333 348899999998654443333445566666655554333
Q ss_pred H-----hhc---cCCCCCC--hhHHH---HHHHHHHHhCCCchHHHHHhhhhcC------CChHHHHHHHHHHH
Q 003802 162 H-----LKV---SNGKQPT--DYRVE---LSKYVVNYAGGLPLAIEVLGSFLCG------RSVEEWKSALNRLQ 216 (794)
Q Consensus 162 ~-----~~~---~~~~~~~--~~~~~---~~~~i~~~~~g~Plai~~~a~~L~~------~~~~~w~~~l~~l~ 216 (794)
. ... ++..... ..... -..+-++.....|+.+.+.+..-.. ...+-++.+++.+-
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ik~l~~~p~~L~l~c~~~~~~~~lP~~~~~ly~~~~~~~~ 448 (824)
T COG5635 375 LYQWLDAFIEDWFGDSRLLAKKLLERLKLPENRRIKELALTPLLLALECLIWQAQGDLPESRAELYEQAVDALL 448 (824)
T ss_pred HHHHHHHHHHhhhcccchhhHHHHHHhcchhhHHHHHhccCHHHHHHHHHhhhHHhhCCCCcHHHHHHHHHHHH
Confidence 2 111 1111111 01111 1122334447789888887754331 34455666665543
No 307
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.23 E-value=0.042 Score=58.64 Aligned_cols=26 Identities=38% Similarity=0.390 Sum_probs=23.5
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhh
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNTLK 40 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~~~ 40 (794)
+.+|.++|+.|+||||.|..++..++
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~ 124 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLK 124 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 67999999999999999999988754
No 308
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.23 E-value=0.013 Score=64.02 Aligned_cols=76 Identities=24% Similarity=0.341 Sum_probs=47.3
Q ss_pred CCCeEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEEechhhhcccChHHHHHHHHHHHhccccccccchhhhHHHHH
Q 003802 12 LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIR 91 (794)
Q Consensus 12 ~~~~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~ 91 (794)
++.-+|..++|++|.||||||.-++++ ..|.. +=+. .|.......+-..|...+...
T Consensus 323 RP~kKilLL~GppGlGKTTLAHViAkq--aGYsV-vEIN----ASDeRt~~~v~~kI~~avq~~---------------- 379 (877)
T KOG1969|consen 323 RPPKKILLLCGPPGLGKTTLAHVIAKQ--AGYSV-VEIN----ASDERTAPMVKEKIENAVQNH---------------- 379 (877)
T ss_pred CCccceEEeecCCCCChhHHHHHHHHh--cCceE-EEec----ccccccHHHHHHHHHHHHhhc----------------
Confidence 456799999999999999999999986 33432 2222 343334333333333332111
Q ss_pred HHh--cCCeEEEEEcCCCChH
Q 003802 92 WRL--CRKRVLVILDDVDQLE 110 (794)
Q Consensus 92 ~~l--~~~r~LlVlDd~~~~~ 110 (794)
..+ .+++..||+|.++...
T Consensus 380 s~l~adsrP~CLViDEIDGa~ 400 (877)
T KOG1969|consen 380 SVLDADSRPVCLVIDEIDGAP 400 (877)
T ss_pred cccccCCCcceEEEecccCCc
Confidence 112 2688889999987653
No 309
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.22 E-value=0.024 Score=56.62 Aligned_cols=118 Identities=19% Similarity=0.137 Sum_probs=63.2
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEEechhhhcccChHHHHHHHHHHHhccc---cccccchhhhHHHH
Q 003802 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMER---DLIIWDVHKGINLI 90 (794)
Q Consensus 14 ~~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~~l 90 (794)
+...++|.|+.|.||||+.+.++..++.. ...+++... .+.......++...+ ..+.+.. .....+.......+
T Consensus 110 ~~~~~~i~g~~g~GKttl~~~l~~~~~~~-~G~i~~~g~-~v~~~d~~~ei~~~~-~~~~q~~~~~r~~v~~~~~k~~~~ 186 (270)
T TIGR02858 110 RVLNTLIISPPQCGKTTLLRDLARILSTG-ISQLGLRGK-KVGIVDERSEIAGCV-NGVPQHDVGIRTDVLDGCPKAEGM 186 (270)
T ss_pred CeeEEEEEcCCCCCHHHHHHHHhCccCCC-CceEEECCE-EeecchhHHHHHHHh-cccccccccccccccccchHHHHH
Confidence 35789999999999999999999865433 233343211 111111111221111 1101100 00011111111122
Q ss_pred HHHh-cCCeEEEEEcCCCChHHHHHHhcCCCCCCCCCEEEEEeCChhh
Q 003802 91 RWRL-CRKRVLVILDDVDQLEQLQALVGNHDWFGFGSRIIITSRDEHV 137 (794)
Q Consensus 91 ~~~l-~~~r~LlVlDd~~~~~~~~~l~~~~~~~~~gs~IlvTtR~~~v 137 (794)
...+ ...+=++|+|.+...+.+..+..... .|..||+||-...+
T Consensus 187 ~~~i~~~~P~villDE~~~~e~~~~l~~~~~---~G~~vI~ttH~~~~ 231 (270)
T TIGR02858 187 MMLIRSMSPDVIVVDEIGREEDVEALLEALH---AGVSIIATAHGRDV 231 (270)
T ss_pred HHHHHhCCCCEEEEeCCCcHHHHHHHHHHHh---CCCEEEEEechhHH
Confidence 2222 25788999999988877777766542 47889999987554
No 310
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.22 E-value=0.0098 Score=59.23 Aligned_cols=49 Identities=20% Similarity=0.323 Sum_probs=33.4
Q ss_pred hhhHhHhcCCCCeEEEEEEccCCCcHHHHHHHHHHHhh--cc----ccceEEEEe
Q 003802 3 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLK--DQ----FEASSFLAN 51 (794)
Q Consensus 3 ~l~~~l~~~~~~~~vi~i~G~~GvGKTtLa~~v~~~~~--~~----f~~~~~~~~ 51 (794)
.|.++|..+-..-.+.=|+|++|+|||+|+.+++-.+. .. =..++|++.
T Consensus 26 ~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidT 80 (256)
T PF08423_consen 26 SLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDT 80 (256)
T ss_dssp HHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEES
T ss_pred HHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeC
Confidence 45556644433456899999999999999998875432 11 234788873
No 311
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.20 E-value=0.015 Score=51.33 Aligned_cols=104 Identities=11% Similarity=0.062 Sum_probs=33.5
Q ss_pred ccccccCceeccCCCcCccCCCC-CCCCCCCCEEecccccccccccccccCccccccccccccccccccccccCCCCCcc
Q 003802 419 IKPLKELKFMNLSHSCNLIRTPD-FTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLK 497 (794)
Q Consensus 419 ~~~l~~L~~L~L~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~ 497 (794)
|.++.+|+.+.+..+ ....... |.++++|+.+.+.++ ........+.++++|+.+.+.+ .....-...+..+++|+
T Consensus 8 F~~~~~l~~i~~~~~-~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~ 84 (129)
T PF13306_consen 8 FYNCSNLESITFPNT-IKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLK 84 (129)
T ss_dssp TTT-TT--EEEETST---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTEC
T ss_pred HhCCCCCCEEEECCC-eeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccc
Confidence 444444444444432 2222222 444444555554442 2222223344444455555433 11111222334455555
Q ss_pred EEEecCCCCCCCCCccccCCCCCcEEEccC
Q 003802 498 ILCLCGCLKLEKLPQDLGEVECLEELDVGG 527 (794)
Q Consensus 498 ~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~ 527 (794)
.+.+..+ +...-...|.++ +|+.+.+..
T Consensus 85 ~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 85 NIDIPSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp EEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred ccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence 5555432 222222334444 555555543
No 312
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.20 E-value=0.037 Score=54.20 Aligned_cols=47 Identities=21% Similarity=0.306 Sum_probs=32.1
Q ss_pred hhhHhHhcCCCCeEEEEEEccCCCcHHHHHHHHHHHh-hccccceEEEE
Q 003802 3 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTL-KDQFEASSFLA 50 (794)
Q Consensus 3 ~l~~~l~~~~~~~~vi~i~G~~GvGKTtLa~~v~~~~-~~~f~~~~~~~ 50 (794)
.+.+.+..+-+.-.++.|.|+.|+||||+|.+++... ++. ..++|++
T Consensus 12 ~ld~~l~ggi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g-~~~~yi~ 59 (230)
T PRK08533 12 ELHKRLGGGIPAGSLILIEGDESTGKSILSQRLAYGFLQNG-YSVSYVS 59 (230)
T ss_pred eeehhhCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCC-CcEEEEe
Confidence 3444454444445699999999999999997776644 333 4456665
No 313
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.19 E-value=0.025 Score=58.56 Aligned_cols=49 Identities=16% Similarity=0.280 Sum_probs=35.1
Q ss_pred hhhHhHhcCCCCeEEEEEEccCCCcHHHHHHHHHHHhhcc------ccceEEEEe
Q 003802 3 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ------FEASSFLAN 51 (794)
Q Consensus 3 ~l~~~l~~~~~~~~vi~i~G~~GvGKTtLa~~v~~~~~~~------f~~~~~~~~ 51 (794)
.+.++|..+-+.-.++-|+|++|+|||+++.+++...... =..++|++.
T Consensus 83 ~lD~~l~GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~t 137 (310)
T TIGR02236 83 ELDELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDT 137 (310)
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEEC
Confidence 3455555444557899999999999999999998754311 126788873
No 314
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.18 E-value=0.046 Score=56.97 Aligned_cols=36 Identities=25% Similarity=0.317 Sum_probs=27.6
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhhccc--cceEEEE
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQF--EASSFLA 50 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~~~~~f--~~~~~~~ 50 (794)
-.++.++|+.|+||||++.+++.+....+ ..+.++.
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit 174 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLT 174 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEe
Confidence 47999999999999999999998654333 3444443
No 315
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.16 E-value=0.019 Score=67.88 Aligned_cols=36 Identities=33% Similarity=0.325 Sum_probs=27.1
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEE
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~ 50 (794)
..++.++|+.|+|||++|+.++......-...+.++
T Consensus 595 ~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d 630 (852)
T TIGR03346 595 IGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRID 630 (852)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEe
Confidence 467889999999999999999996543333444444
No 316
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.15 E-value=0.00044 Score=66.05 Aligned_cols=81 Identities=27% Similarity=0.276 Sum_probs=54.5
Q ss_pred CCCCCEEecCCCCCccCCCCccccCCCCCCeEeCCCCCCccCchhhhccCCCCEEecCCCcCCCCCCCCCcccccccccc
Q 003802 587 LSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLPSSINQLLKLKILCLEKCRNLKSLPELPPEIVFVGAED 666 (794)
Q Consensus 587 ~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~~~~~~~L~~L~l~~ 666 (794)
+.+.+.|++++|. ++ -......++.|+.|.|+-|+|+++. .+..|++|++|+|..|. |+.+ ..|+ .+.+
T Consensus 18 l~~vkKLNcwg~~-L~--DIsic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~----I~sl-dEL~--YLkn 86 (388)
T KOG2123|consen 18 LENVKKLNCWGCG-LD--DISICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNC----IESL-DELE--YLKN 86 (388)
T ss_pred HHHhhhhcccCCC-cc--HHHHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcc----cccH-HHHH--HHhc
Confidence 4567778888887 33 2223457788888888888888776 57788888888888876 2221 1222 3466
Q ss_pred cccccccccccc
Q 003802 667 CTSLETISAFAK 678 (794)
Q Consensus 667 ~~~L~~l~~~~n 678 (794)
+|+|+.|.+..|
T Consensus 87 lpsLr~LWL~EN 98 (388)
T KOG2123|consen 87 LPSLRTLWLDEN 98 (388)
T ss_pred CchhhhHhhccC
Confidence 777777777666
No 317
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=96.15 E-value=0.0037 Score=53.36 Aligned_cols=29 Identities=41% Similarity=0.550 Sum_probs=21.1
Q ss_pred EEEEccCCCcHHHHHHHHHHHhhccccce
Q 003802 18 IGICGMGGIGKTTLAKVLYNTLKDQFEAS 46 (794)
Q Consensus 18 i~i~G~~GvGKTtLa~~v~~~~~~~f~~~ 46 (794)
|.|+|.+|+|||++|+.++..+...|..+
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~f~RI 30 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLSFKRI 30 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--EEEE
T ss_pred EeeECCCccHHHHHHHHHHHHcCCceeEE
Confidence 67999999999999999999888777653
No 318
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.14 E-value=0.016 Score=57.87 Aligned_cols=35 Identities=31% Similarity=0.423 Sum_probs=23.3
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhhccccceEEEE
Q 003802 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~ 50 (794)
+.|.|.|.+|+||||+|+++...+.+.=..+.+++
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~ 36 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIIS 36 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEc
Confidence 57899999999999999999997665323344443
No 319
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=96.13 E-value=0.024 Score=56.67 Aligned_cols=26 Identities=35% Similarity=0.648 Sum_probs=22.5
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhhcc
Q 003802 17 FIGICGMGGIGKTTLAKVLYNTLKDQ 42 (794)
Q Consensus 17 vi~i~G~~GvGKTtLa~~v~~~~~~~ 42 (794)
.|.++|.+|+||||+|+++++.....
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~ 26 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEK 26 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 37899999999999999999876543
No 320
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.12 E-value=0.0048 Score=54.43 Aligned_cols=22 Identities=59% Similarity=0.830 Sum_probs=20.5
Q ss_pred EEEEccCCCcHHHHHHHHHHHh
Q 003802 18 IGICGMGGIGKTTLAKVLYNTL 39 (794)
Q Consensus 18 i~i~G~~GvGKTtLa~~v~~~~ 39 (794)
|+|.|+.|+||||+|+++.++.
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999874
No 321
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.11 E-value=0.05 Score=50.87 Aligned_cols=34 Identities=35% Similarity=0.385 Sum_probs=26.1
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhhccccceEEEE
Q 003802 17 FIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (794)
Q Consensus 17 vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~ 50 (794)
++.++|++|+||||+++.++..+.+.-..++.++
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~ 35 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVA 35 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 6889999999999999999987665522344443
No 322
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.11 E-value=0.021 Score=58.56 Aligned_cols=49 Identities=20% Similarity=0.367 Sum_probs=34.9
Q ss_pred hhhhHhHhcCCCCeEEEEEEccCCCcHHHHHHHHHHHhh------ccccceEEEE
Q 003802 2 EKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLK------DQFEASSFLA 50 (794)
Q Consensus 2 ~~l~~~l~~~~~~~~vi~i~G~~GvGKTtLa~~v~~~~~------~~f~~~~~~~ 50 (794)
+.+.++|.-+-+.-+++-|+|++|+|||+++.+++-... ..=..++|++
T Consensus 83 ~~LD~lLgGGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYId 137 (313)
T TIGR02238 83 QALDGILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYID 137 (313)
T ss_pred HHHHHHhCCCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEE
Confidence 345566665555668999999999999999998775321 1124678887
No 323
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=96.10 E-value=0.044 Score=53.77 Aligned_cols=49 Identities=20% Similarity=0.272 Sum_probs=35.6
Q ss_pred hhhhHhHhcCCCCeEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEE
Q 003802 2 EKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (794)
Q Consensus 2 ~~l~~~l~~~~~~~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~ 50 (794)
+.+.+++..+-+.-.++.|.|.+|+|||++|.+++......=..++|++
T Consensus 3 ~~LD~~l~gGi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s 51 (224)
T TIGR03880 3 PGLDEMLGGGFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYIS 51 (224)
T ss_pred hhhHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 4556666555555689999999999999999999875433334566765
No 324
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.09 E-value=0.035 Score=57.35 Aligned_cols=36 Identities=25% Similarity=0.344 Sum_probs=26.3
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhh--ccccceEEEE
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNTLK--DQFEASSFLA 50 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~~~--~~f~~~~~~~ 50 (794)
-+||.++|+.||||||-..+++.++. ..-..+..+.
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiIT 240 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIIT 240 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEE
Confidence 68999999999999987766666443 3344555554
No 325
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.09 E-value=0.061 Score=57.79 Aligned_cols=36 Identities=19% Similarity=0.236 Sum_probs=27.2
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhh--ccccceEEEE
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNTLK--DQFEASSFLA 50 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~~~--~~f~~~~~~~ 50 (794)
.+++.++|++|+||||++..++.... ..-..+.+++
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~ 258 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALIT 258 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 46999999999999999999987654 3333455554
No 326
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.08 E-value=0.014 Score=51.54 Aligned_cols=97 Identities=10% Similarity=0.026 Sum_probs=30.8
Q ss_pred ccccccCceeccCCCcCccCCCC-CCCCCCCCEEecccccccccccccccCccccccccccccccccccccccCCCCCcc
Q 003802 419 IKPLKELKFMNLSHSCNLIRTPD-FTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLK 497 (794)
Q Consensus 419 ~~~l~~L~~L~L~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~ 497 (794)
|.++++|+.+.+.++ +...... |.++++|+.+.+.+ .........+..+++|+.+++..+ ....-...+.++ +|+
T Consensus 31 F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~ 106 (129)
T PF13306_consen 31 FSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLK 106 (129)
T ss_dssp TTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--
T ss_pred ccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCcc-ccEEchhhhcCC-Cce
Confidence 444444555555443 2222222 44554555555543 222222234444555555555432 222222234443 555
Q ss_pred EEEecCCCCCCCCCccccCCCCC
Q 003802 498 ILCLCGCLKLEKLPQDLGEVECL 520 (794)
Q Consensus 498 ~L~L~~~~~~~~~~~~~~~l~~L 520 (794)
.+.+.. .....-...|.++++|
T Consensus 107 ~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 107 EINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp EEE-TT-B-SS----GGG-----
T ss_pred EEEECC-CccEECCccccccccC
Confidence 555543 2222233345554444
No 327
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.05 E-value=0.0095 Score=58.59 Aligned_cols=49 Identities=24% Similarity=0.264 Sum_probs=35.1
Q ss_pred hhhhHhHhcCCCCeEEEEEEccCCCcHHHHHHHHHHHhhcc-ccceEEEE
Q 003802 2 EKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ-FEASSFLA 50 (794)
Q Consensus 2 ~~l~~~l~~~~~~~~vi~i~G~~GvGKTtLa~~v~~~~~~~-f~~~~~~~ 50 (794)
+.+.+++..+-+.-.++.|.|++|+|||++|.+++...... =+.++|+.
T Consensus 6 ~~LD~~l~GGip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs 55 (226)
T PF06745_consen 6 PGLDELLGGGIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVS 55 (226)
T ss_dssp TTHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEE
T ss_pred hhHHHhhcCCCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEE
Confidence 45666665555556799999999999999999987644333 45677876
No 328
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.02 E-value=0.0041 Score=58.87 Aligned_cols=108 Identities=21% Similarity=0.178 Sum_probs=56.4
Q ss_pred hhHhHhcCCCCeEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEEechhhhcccChHHHHHHHHHHHhccccccccch
Q 003802 4 MNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDV 83 (794)
Q Consensus 4 l~~~l~~~~~~~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 83 (794)
+.++|...-..-..++|.|+.|.||||+++.+...+... ...+.+....+..... .....-............
T Consensus 14 ~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~-~~~i~ied~~E~~~~~------~~~~~~~~~~~~~~~~~~ 86 (186)
T cd01130 14 QAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPD-ERIITIEDTAELQLPH------PNWVRLVTRPGNVEGSGE 86 (186)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCC-CCEEEECCccccCCCC------CCEEEEEEecCCCCCCCc
Confidence 334444332334689999999999999999998865432 2233332111110000 000000000000000111
Q ss_pred hhhHHHHHHHhcCCeEEEEEcCCCChHHHHHHhcC
Q 003802 84 HKGINLIRWRLCRKRVLVILDDVDQLEQLQALVGN 118 (794)
Q Consensus 84 ~~~~~~l~~~l~~~r~LlVlDd~~~~~~~~~l~~~ 118 (794)
....+.++..++..+=.++++.+.+.+.+..+...
T Consensus 87 ~~~~~~l~~~lR~~pd~i~igEir~~ea~~~~~a~ 121 (186)
T cd01130 87 VTMADLLRSALRMRPDRIIVGEVRGGEALDLLQAM 121 (186)
T ss_pred cCHHHHHHHHhccCCCEEEEEccCcHHHHHHHHHH
Confidence 23345566667777888999999988877655443
No 329
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=96.02 E-value=0.0044 Score=52.42 Aligned_cols=26 Identities=50% Similarity=0.583 Sum_probs=22.1
Q ss_pred EEEEccCCCcHHHHHHHHHHHhhccc
Q 003802 18 IGICGMGGIGKTTLAKVLYNTLKDQF 43 (794)
Q Consensus 18 i~i~G~~GvGKTtLa~~v~~~~~~~f 43 (794)
|.|+|++|+|||++|+.++..+.+++
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~ 26 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHI 26 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 56999999999999999998765543
No 330
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=96.00 E-value=0.034 Score=64.57 Aligned_cols=111 Identities=19% Similarity=0.190 Sum_probs=59.1
Q ss_pred CCeEEEEEcCCCC---hHHH----HHHhcCCCCCCCCCEEEEEeCChhhhhhcCcCcEE---EcCCCChHhHHHHHHhhc
Q 003802 96 RKRVLVILDDVDQ---LEQL----QALVGNHDWFGFGSRIIITSRDEHVLKSHGVTNTY---KVRGLDYVEALQLFHLKV 165 (794)
Q Consensus 96 ~~r~LlVlDd~~~---~~~~----~~l~~~~~~~~~gs~IlvTtR~~~v~~~~~~~~~~---~l~~L~~~ea~~lf~~~~ 165 (794)
..+-|+++|.... ..+- ..+...+. ..|+.+|+||....++........+ .+. ++. +... +.-..
T Consensus 406 ~~~sLvLlDE~~~GtDp~eg~ala~aile~l~--~~~~~vIitTH~~el~~~~~~~~~v~~~~~~-~d~-~~l~-~~Ykl 480 (782)
T PRK00409 406 DKNSLVLFDELGAGTDPDEGAALAISILEYLR--KRGAKIIATTHYKELKALMYNREGVENASVE-FDE-ETLR-PTYRL 480 (782)
T ss_pred CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--HCCCEEEEECChHHHHHHHhcCCCeEEEEEE-Eec-CcCc-EEEEE
Confidence 4778999998732 2221 22333222 3478999999997776544322211 111 111 1111 11111
Q ss_pred cCCCCCChhHHHHHHHHHHHhCCCchHHHHHhhhhcCCChHHHHHHHHHHH
Q 003802 166 SNGKQPTDYRVELSKYVVNYAGGLPLAIEVLGSFLCGRSVEEWKSALNRLQ 216 (794)
Q Consensus 166 ~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~a~~L~~~~~~~w~~~l~~l~ 216 (794)
..+... ...|-+|++++ |+|-.+..-|..+......++...++.+.
T Consensus 481 ~~G~~g----~S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~~l~ 526 (782)
T PRK00409 481 LIGIPG----KSNAFEIAKRL-GLPENIIEEAKKLIGEDKEKLNELIASLE 526 (782)
T ss_pred eeCCCC----CcHHHHHHHHh-CcCHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 111111 23567788888 89988888888776544555666665543
No 331
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.98 E-value=0.074 Score=54.97 Aligned_cols=37 Identities=32% Similarity=0.400 Sum_probs=28.4
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEE
Q 003802 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (794)
Q Consensus 14 ~~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~ 50 (794)
..++|+|+|+.|+||||++..++.....+-..+.+++
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lIt 241 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFIT 241 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 4689999999999999999999886543333455554
No 332
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=95.98 E-value=0.025 Score=58.38 Aligned_cols=48 Identities=21% Similarity=0.250 Sum_probs=34.2
Q ss_pred hhhHhHhcCCCCeEEEEEEccCCCcHHHHHHHHHHHhh------ccccceEEEE
Q 003802 3 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLK------DQFEASSFLA 50 (794)
Q Consensus 3 ~l~~~l~~~~~~~~vi~i~G~~GvGKTtLa~~v~~~~~------~~f~~~~~~~ 50 (794)
.+.++|..+-+.-.++-|+|++|+|||+|+.+++-... ..-..++|++
T Consensus 114 ~LD~lLgGGi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyId 167 (344)
T PLN03187 114 ALDELLGGGIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYID 167 (344)
T ss_pred hHHhhcCCCCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEE
Confidence 45555555545568899999999999999998864321 1124678887
No 333
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=95.97 E-value=0.025 Score=62.28 Aligned_cols=49 Identities=20% Similarity=0.228 Sum_probs=38.5
Q ss_pred hhhhHhHhcCCCCeEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEE
Q 003802 2 EKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (794)
Q Consensus 2 ~~l~~~l~~~~~~~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~ 50 (794)
+++.++|..+-+.-.++.|.|++|+|||||+.+++.....+-+.++|+.
T Consensus 250 ~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s 298 (484)
T TIGR02655 250 VRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFA 298 (484)
T ss_pred HhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 4566777766666789999999999999999999886544445677765
No 334
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.97 E-value=0.02 Score=60.26 Aligned_cols=39 Identities=23% Similarity=0.278 Sum_probs=30.8
Q ss_pred ChhhhHhHhcC-------CCCeEEEEEEccCCCcHHHHHHHHHHHh
Q 003802 1 MEKMNGYLEAG-------LDDVRFIGICGMGGIGKTTLAKVLYNTL 39 (794)
Q Consensus 1 ~~~l~~~l~~~-------~~~~~vi~i~G~~GvGKTtLa~~v~~~~ 39 (794)
+|+|.++|.+. ..=++=|.++|++|.|||-||++++-..
T Consensus 316 LeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA 361 (752)
T KOG0734|consen 316 LEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 361 (752)
T ss_pred HHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhccc
Confidence 46788888653 2226778999999999999999998753
No 335
>PTZ00301 uridine kinase; Provisional
Probab=95.96 E-value=0.0067 Score=58.12 Aligned_cols=29 Identities=31% Similarity=0.537 Sum_probs=25.1
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhhccc
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQF 43 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~~~~~f 43 (794)
..+|+|.|++|+||||+|+.+.+++...+
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~~~~ 31 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELMAHC 31 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHHhhc
Confidence 46999999999999999999998775544
No 336
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.95 E-value=0.056 Score=50.78 Aligned_cols=24 Identities=38% Similarity=0.548 Sum_probs=21.4
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHh
Q 003802 16 RFIGICGMGGIGKTTLAKVLYNTL 39 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~~~ 39 (794)
.+++|.|+.|.|||||++.++-..
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 29 EKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhccC
Confidence 589999999999999999998743
No 337
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=95.94 E-value=0.031 Score=58.53 Aligned_cols=108 Identities=14% Similarity=0.167 Sum_probs=63.3
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEEechhhhcccChHHHHHHHHHHHhccccccccchhhhHHHHHHHh
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWRL 94 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l 94 (794)
...|.|.|+.|.||||+.+.+...+.......++...- +... .... ........+. ..+.....+.++..+
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEd-----p~E~--~~~~-~~~~i~q~ev-g~~~~~~~~~l~~~l 192 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIED-----PIEY--VHRN-KRSLINQREV-GLDTLSFANALRAAL 192 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcC-----Chhh--hccC-ccceEEcccc-CCCCcCHHHHHHHhh
Confidence 36899999999999999999988776555555554311 1000 0000 0000000000 111223456677788
Q ss_pred cCCeEEEEEcCCCChHHHHHHhcCCCCCCCCCEEEEEeCC
Q 003802 95 CRKRVLVILDDVDQLEQLQALVGNHDWFGFGSRIIITSRD 134 (794)
Q Consensus 95 ~~~r~LlVlDd~~~~~~~~~l~~~~~~~~~gs~IlvTtR~ 134 (794)
+..+=.+++|.+.+.+.+....... ..|..|+.|.-.
T Consensus 193 r~~pd~i~vgEird~~~~~~~l~aa---~tGh~v~~T~Ha 229 (343)
T TIGR01420 193 REDPDVILIGEMRDLETVELALTAA---ETGHLVFGTLHT 229 (343)
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHHH---HcCCcEEEEEcC
Confidence 8899999999999888766533321 346556555554
No 338
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.94 E-value=0.0067 Score=46.44 Aligned_cols=23 Identities=48% Similarity=0.631 Sum_probs=21.2
Q ss_pred EEEEEccCCCcHHHHHHHHHHHh
Q 003802 17 FIGICGMGGIGKTTLAKVLYNTL 39 (794)
Q Consensus 17 vi~i~G~~GvGKTtLa~~v~~~~ 39 (794)
+|+|.|..|+||||+|+.+.+++
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999999986
No 339
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=95.93 E-value=0.03 Score=53.44 Aligned_cols=23 Identities=26% Similarity=0.189 Sum_probs=21.1
Q ss_pred EEEEEEccCCCcHHHHHHHHHHH
Q 003802 16 RFIGICGMGGIGKTTLAKVLYNT 38 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~~ 38 (794)
++++|+|+.|.||||+.+.++-.
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~ 48 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVN 48 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHH
Confidence 79999999999999999999763
No 340
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.92 E-value=0.0081 Score=52.36 Aligned_cols=37 Identities=32% Similarity=0.282 Sum_probs=27.8
Q ss_pred hhhHhHhcCCCCeEEEEEEccCCCcHHHHHHHHHHHh
Q 003802 3 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTL 39 (794)
Q Consensus 3 ~l~~~l~~~~~~~~vi~i~G~~GvGKTtLa~~v~~~~ 39 (794)
++.+.+...-+.-.+|.+.|.-|+||||+++.+++..
T Consensus 10 ~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 10 KFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred HHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3444444433344689999999999999999999965
No 341
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=95.88 E-value=0.046 Score=60.85 Aligned_cols=131 Identities=19% Similarity=0.193 Sum_probs=72.9
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEEechhhhcccChHHHHHHHHHHHhccccccccchhhhHHHHHH
Q 003802 13 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRW 92 (794)
Q Consensus 13 ~~~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~ 92 (794)
...+.+.++|++|.|||.||+.+++..+..|-.+..- ++....+.+ ......+.+..
T Consensus 274 ~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~-------------~l~sk~vGe----------sek~ir~~F~~ 330 (494)
T COG0464 274 RPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGS-------------ELLSKWVGE----------SEKNIRELFEK 330 (494)
T ss_pred CCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCH-------------HHhccccch----------HHHHHHHHHHH
Confidence 3466899999999999999999999765554332211 111111111 11112222333
Q ss_pred HhcCCeEEEEEcCCCChH-------------HHHHHhcCCCCCC--CCCEEEEEeCChhhhh-hc----CcCcEEEcCCC
Q 003802 93 RLCRKRVLVILDDVDQLE-------------QLQALVGNHDWFG--FGSRIIITSRDEHVLK-SH----GVTNTYKVRGL 152 (794)
Q Consensus 93 ~l~~~r~LlVlDd~~~~~-------------~~~~l~~~~~~~~--~gs~IlvTtR~~~v~~-~~----~~~~~~~l~~L 152 (794)
..+..++.|++|+++... ....++....... .+..||-||-...... .+ .-...+.+..-
T Consensus 331 A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~p 410 (494)
T COG0464 331 ARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLP 410 (494)
T ss_pred HHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCC
Confidence 334788999999984432 2333333332112 2333344444332211 11 22457788888
Q ss_pred ChHhHHHHHHhhcc
Q 003802 153 DYVEALQLFHLKVS 166 (794)
Q Consensus 153 ~~~ea~~lf~~~~~ 166 (794)
+.++..+.|+....
T Consensus 411 d~~~r~~i~~~~~~ 424 (494)
T COG0464 411 DLEERLEIFKIHLR 424 (494)
T ss_pred CHHHHHHHHHHHhc
Confidence 88999999998873
No 342
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=95.85 E-value=0.024 Score=54.85 Aligned_cols=39 Identities=31% Similarity=0.436 Sum_probs=28.9
Q ss_pred hhHhHhcCCCCeEEEEEEccCCCcHHHHHHHHHHHhhcc
Q 003802 4 MNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ 42 (794)
Q Consensus 4 l~~~l~~~~~~~~vi~i~G~~GvGKTtLa~~v~~~~~~~ 42 (794)
+.+.+....++..+|+|+|++|+|||||+-++...+++.
T Consensus 18 ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~ 56 (266)
T PF03308_consen 18 LLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRER 56 (266)
T ss_dssp HHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhc
Confidence 344444444568999999999999999999999876654
No 343
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=95.84 E-value=0.012 Score=54.37 Aligned_cols=37 Identities=22% Similarity=0.267 Sum_probs=25.0
Q ss_pred hhhhHhHhcCCCCeEEEEEEccCCCcHHHHHHHHHHH
Q 003802 2 EKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNT 38 (794)
Q Consensus 2 ~~l~~~l~~~~~~~~vi~i~G~~GvGKTtLa~~v~~~ 38 (794)
.++.+.+..-.....-|.|+|..|+||+.+|+.+.+.
T Consensus 9 ~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~ 45 (168)
T PF00158_consen 9 KRLREQAKRAASSDLPVLITGETGTGKELLARAIHNN 45 (168)
T ss_dssp HHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHh
Confidence 3444555432222245569999999999999999883
No 344
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.81 E-value=0.12 Score=55.04 Aligned_cols=36 Identities=22% Similarity=0.210 Sum_probs=27.3
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHHHhhccccceEEE
Q 003802 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFL 49 (794)
Q Consensus 14 ~~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~ 49 (794)
...+|.++|+.|+||||+|.+++..++.+-..+..+
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV 134 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLV 134 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE
Confidence 368999999999999999999988655432233444
No 345
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.81 E-value=0.035 Score=57.04 Aligned_cols=29 Identities=34% Similarity=0.406 Sum_probs=25.4
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHHHhhcc
Q 003802 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQ 42 (794)
Q Consensus 14 ~~~vi~i~G~~GvGKTtLa~~v~~~~~~~ 42 (794)
...+|+++|+.|+||||++..++..++..
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~ 141 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQ 141 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 46899999999999999999999876544
No 346
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.78 E-value=0.032 Score=51.67 Aligned_cols=24 Identities=29% Similarity=0.369 Sum_probs=21.5
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHh
Q 003802 16 RFIGICGMGGIGKTTLAKVLYNTL 39 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~~~ 39 (794)
.+++|.|+.|.|||||++.++-..
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 28 DRLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 589999999999999999998743
No 347
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.77 E-value=0.027 Score=51.97 Aligned_cols=116 Identities=19% Similarity=0.147 Sum_probs=57.8
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhhccccceEEEEechhhhcccChHHHHHHHHHHHhccccccccchhhhHHHHHHHhc
Q 003802 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWRLC 95 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~ 95 (794)
.+++|.|+.|.|||||.+.++-... .....+++.... ... .... +..+. ....-......+...-.+.+.+-
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~~~-~~~G~v~~~g~~-~~~-~~~~----~~~~~-~i~~~~qLS~G~~qrl~laral~ 98 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGLYK-PDSGEILVDGKE-VSF-ASPR----DARRA-GIAMVYQLSVGERQMVEIARALA 98 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEECCEE-CCc-CCHH----HHHhc-CeEEEEecCHHHHHHHHHHHHHh
Confidence 5899999999999999999986432 234455554211 110 0100 11111 00000001112222333455566
Q ss_pred CCeEEEEEcCCCCh---HHHHHHhcCCCC-CCCCCEEEEEeCChhhhh
Q 003802 96 RKRVLVILDDVDQL---EQLQALVGNHDW-FGFGSRIIITSRDEHVLK 139 (794)
Q Consensus 96 ~~r~LlVlDd~~~~---~~~~~l~~~~~~-~~~gs~IlvTtR~~~v~~ 139 (794)
.++-++++|+.... ...+.+...+.. ...|..||++|.+.....
T Consensus 99 ~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~ 146 (163)
T cd03216 99 RNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVF 146 (163)
T ss_pred cCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 77888999986322 222222221111 123667888888765433
No 348
>CHL00095 clpC Clp protease ATP binding subunit
Probab=95.77 E-value=0.029 Score=66.21 Aligned_cols=36 Identities=28% Similarity=0.266 Sum_probs=26.0
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEE
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~ 50 (794)
..++.++|+.|+|||+||+.+++.+-..-...+.++
T Consensus 539 ~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d 574 (821)
T CHL00095 539 IASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLD 574 (821)
T ss_pred ceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEE
Confidence 356789999999999999999986533223334443
No 349
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=95.77 E-value=0.056 Score=51.94 Aligned_cols=33 Identities=30% Similarity=0.387 Sum_probs=27.2
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHHHHhhccccc
Q 003802 13 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEA 45 (794)
Q Consensus 13 ~~~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~ 45 (794)
....+|.++||+|.||||..++++....+.+..
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~p 49 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTP 49 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHHhhccCC
Confidence 346788899999999999999999877666543
No 350
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.77 E-value=0.027 Score=54.81 Aligned_cols=126 Identities=16% Similarity=0.168 Sum_probs=70.1
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEEech--hhhcccChHHHHHHHHHHHhcccc------ccccchhhh
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVR--EVSVTRGLVPLQEQLLSEVLMERD------LIIWDVHKG 86 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~------~~~~~~~~~ 86 (794)
-.+++|+|.+|+||||+++.+..-.+-. .+.+++.... ..+ .....+...+++..++...+ .....-+..
T Consensus 39 ge~~glVGESG~GKSTlgr~i~~L~~pt-~G~i~f~g~~i~~~~-~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQ 116 (268)
T COG4608 39 GETLGLVGESGCGKSTLGRLILGLEEPT-SGEILFEGKDITKLS-KEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQ 116 (268)
T ss_pred CCEEEEEecCCCCHHHHHHHHHcCcCCC-CceEEEcCcchhhcc-hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhh
Confidence 4689999999999999999999854322 2334443111 011 11222334444444332211 112222333
Q ss_pred HHHHHHHhcCCeEEEEEcCCCChHH------HHHHhcCCCCCCCCCEEEEEeCChhhhhhcCc
Q 003802 87 INLIRWRLCRKRVLVILDDVDQLEQ------LQALVGNHDWFGFGSRIIITSRDEHVLKSHGV 143 (794)
Q Consensus 87 ~~~l~~~l~~~r~LlVlDd~~~~~~------~~~l~~~~~~~~~gs~IlvTtR~~~v~~~~~~ 143 (794)
.-.+.+.+.-++-++|.|.....-+ .-.++..+. ...|-..++.|-+-.++..+..
T Consensus 117 Ri~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq-~~~~lt~lFIsHDL~vv~~isd 178 (268)
T COG4608 117 RIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQ-EELGLTYLFISHDLSVVRYISD 178 (268)
T ss_pred hHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHH-HHhCCeEEEEEEEHHhhhhhcc
Confidence 4456778888999999998643322 111111111 1246678888888777776554
No 351
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.74 E-value=0.032 Score=51.92 Aligned_cols=23 Identities=52% Similarity=0.518 Sum_probs=20.8
Q ss_pred EEEEEccCCCcHHHHHHHHHHHh
Q 003802 17 FIGICGMGGIGKTTLAKVLYNTL 39 (794)
Q Consensus 17 vi~i~G~~GvGKTtLa~~v~~~~ 39 (794)
.|.|.|++|+||||+|++++++.
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47799999999999999999973
No 352
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=95.74 E-value=0.039 Score=47.07 Aligned_cols=36 Identities=17% Similarity=0.330 Sum_probs=28.7
Q ss_pred hhhHhHhc-CCCCeEEEEEEccCCCcHHHHHHHHHHH
Q 003802 3 KMNGYLEA-GLDDVRFIGICGMGGIGKTTLAKVLYNT 38 (794)
Q Consensus 3 ~l~~~l~~-~~~~~~vi~i~G~~GvGKTtLa~~v~~~ 38 (794)
.|.+.+.. .+..+-|++++|+.|+|||.+++.+++.
T Consensus 40 ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 40 AIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred HHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 45555554 3455889999999999999999999985
No 353
>PRK04040 adenylate kinase; Provisional
Probab=95.74 E-value=0.011 Score=55.86 Aligned_cols=26 Identities=31% Similarity=0.572 Sum_probs=23.5
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhh
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNTLK 40 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~~~ 40 (794)
..+|+|+|++|+||||+++.+++.+.
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 36899999999999999999999874
No 354
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.73 E-value=0.01 Score=57.49 Aligned_cols=27 Identities=44% Similarity=0.688 Sum_probs=24.4
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHHHHh
Q 003802 13 DDVRFIGICGMGGIGKTTLAKVLYNTL 39 (794)
Q Consensus 13 ~~~~vi~i~G~~GvGKTtLa~~v~~~~ 39 (794)
.+..+|+|.|++|+||||||+.++..+
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 356799999999999999999999876
No 355
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.72 E-value=0.052 Score=50.48 Aligned_cols=23 Identities=26% Similarity=0.358 Sum_probs=20.3
Q ss_pred eEEEEEEccCCCcHHHHHHHHHH
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYN 37 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~ 37 (794)
-.+++|+|+.|+|||||.+.+..
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHhh
Confidence 36899999999999999998853
No 356
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.72 E-value=0.044 Score=51.22 Aligned_cols=33 Identities=33% Similarity=0.458 Sum_probs=24.9
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhhccccceEEE
Q 003802 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFL 49 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~ 49 (794)
.+++|+|+.|.|||||++.++-... .....+++
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~-~~~G~i~~ 59 (173)
T cd03230 27 EIYGLLGPNGAGKTTLIKIILGLLK-PDSGEIKV 59 (173)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEE
Confidence 5899999999999999999987432 23344444
No 357
>PRK06547 hypothetical protein; Provisional
Probab=95.71 E-value=0.013 Score=54.32 Aligned_cols=27 Identities=37% Similarity=0.335 Sum_probs=24.2
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHHHHh
Q 003802 13 DDVRFIGICGMGGIGKTTLAKVLYNTL 39 (794)
Q Consensus 13 ~~~~vi~i~G~~GvGKTtLa~~v~~~~ 39 (794)
....+|+|.|++|+||||+|+.+++..
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 457899999999999999999999864
No 358
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.70 E-value=0.006 Score=34.43 Aligned_cols=22 Identities=18% Similarity=0.217 Sum_probs=16.8
Q ss_pred CceEEEcCCCCccccccccccc
Q 003802 401 KLFKLNLCNSRIKYLWKGIKPL 422 (794)
Q Consensus 401 ~L~~L~L~~n~i~~l~~~~~~l 422 (794)
+|++||+++|.++.+|.+|++|
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT-
T ss_pred CccEEECCCCcCEeCChhhcCC
Confidence 5788888888888888776543
No 359
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.70 E-value=0.021 Score=54.35 Aligned_cols=31 Identities=29% Similarity=0.331 Sum_probs=25.6
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHHHHhhccc
Q 003802 13 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQF 43 (794)
Q Consensus 13 ~~~~vi~i~G~~GvGKTtLa~~v~~~~~~~f 43 (794)
+.++=|.++|++|.|||-+|++|+++....|
T Consensus 209 dppkgvllygppgtgktl~aravanrtdacf 239 (435)
T KOG0729|consen 209 DPPKGVLLYGPPGTGKTLCARAVANRTDACF 239 (435)
T ss_pred CCCCceEEeCCCCCchhHHHHHHhcccCceE
Confidence 4467788999999999999999999765433
No 360
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.69 E-value=0.016 Score=55.97 Aligned_cols=23 Identities=22% Similarity=0.195 Sum_probs=21.1
Q ss_pred eEEEEEEccCCCcHHHHHHHHHH
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYN 37 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~ 37 (794)
.+++.|+|+.|.||||+.+.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 48999999999999999999985
No 361
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=95.67 E-value=0.019 Score=57.82 Aligned_cols=47 Identities=23% Similarity=0.267 Sum_probs=39.5
Q ss_pred hhHhHhcCCCCeEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEE
Q 003802 4 MNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (794)
Q Consensus 4 l~~~l~~~~~~~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~ 50 (794)
+.+++..+-+.-+++.|+|.+|+|||++|.++......+...++|+.
T Consensus 12 lD~~l~GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs 58 (260)
T COG0467 12 LDEILGGGLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVS 58 (260)
T ss_pred hHHHhcCCCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEE
Confidence 45556655567789999999999999999999997777788899987
No 362
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=95.65 E-value=0.17 Score=51.44 Aligned_cols=154 Identities=10% Similarity=0.048 Sum_probs=85.5
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHHHh--------hcc-cc-ceEEEEechhhhcccChHHHHHHHHHHHhccccccccch
Q 003802 14 DVRFIGICGMGGIGKTTLAKVLYNTL--------KDQ-FE-ASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDV 83 (794)
Q Consensus 14 ~~~vi~i~G~~GvGKTtLa~~v~~~~--------~~~-f~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 83 (794)
-.++..++|..|.||+++|..+++.+ ... .+ .+.+++. ......+.+ .+++...+.-.
T Consensus 17 l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~---~g~~i~vd~-Ir~l~~~~~~~-------- 84 (299)
T PRK07132 17 ISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDI---FDKDLSKSE-FLSAINKLYFS-------- 84 (299)
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEecc---CCCcCCHHH-HHHHHHHhccC--------
Confidence 35788899999999999999999876 111 11 2222220 001111111 11222221000
Q ss_pred hhhHHHHHHHhcCCeEEEEEcCCCChHH--HHHHhcCCCCCCCCCEEEEEe-CChhhhhh-cCcCcEEEcCCCChHhHHH
Q 003802 84 HKGINLIRWRLCRKRVLVILDDVDQLEQ--LQALVGNHDWFGFGSRIIITS-RDEHVLKS-HGVTNTYKVRGLDYVEALQ 159 (794)
Q Consensus 84 ~~~~~~l~~~l~~~r~LlVlDd~~~~~~--~~~l~~~~~~~~~gs~IlvTt-R~~~v~~~-~~~~~~~~l~~L~~~ea~~ 159 (794)
-.-.+++-++|+|+++.... ..+++..+....+.+.+|++| ....+.+. .+....+++.++++++..+
T Consensus 85 --------~~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~~ 156 (299)
T PRK07132 85 --------SFVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILA 156 (299)
T ss_pred --------CcccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHHH
Confidence 00114777889999876643 556666555445677666655 44444432 3445689999999999998
Q ss_pred HHHhhccCCCCCChhHHHHHHHHHHHhCCCchHHHH
Q 003802 160 LFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIEV 195 (794)
Q Consensus 160 lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 195 (794)
.+.... .. ++.+..++...+|.-.|+..
T Consensus 157 ~l~~~~-----~~---~~~a~~~a~~~~~~~~a~~~ 184 (299)
T PRK07132 157 KLLSKN-----KE---KEYNWFYAYIFSNFEQAEKY 184 (299)
T ss_pred HHHHcC-----CC---hhHHHHHHHHcCCHHHHHHH
Confidence 877541 11 13345555555552244443
No 363
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.65 E-value=0.05 Score=50.67 Aligned_cols=25 Identities=48% Similarity=0.648 Sum_probs=21.8
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHh
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNTL 39 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~~ 39 (794)
-.+++|.|+.|+|||||++.++...
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcCC
Confidence 3589999999999999999988743
No 364
>PTZ00035 Rad51 protein; Provisional
Probab=95.63 E-value=0.064 Score=55.73 Aligned_cols=49 Identities=18% Similarity=0.224 Sum_probs=34.5
Q ss_pred hhhhHhHhcCCCCeEEEEEEccCCCcHHHHHHHHHHHhhc------cccceEEEE
Q 003802 2 EKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKD------QFEASSFLA 50 (794)
Q Consensus 2 ~~l~~~l~~~~~~~~vi~i~G~~GvGKTtLa~~v~~~~~~------~f~~~~~~~ 50 (794)
+.+.++|..+-+.-.++.|+|+.|+|||+++..++-..+- .=..++|++
T Consensus 105 ~~LD~lLgGGi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyId 159 (337)
T PTZ00035 105 TQLDKLLGGGIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYID 159 (337)
T ss_pred HHHHHHhCCCCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEE
Confidence 3455666555556789999999999999999988754320 123456877
No 365
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.59 E-value=0.013 Score=56.55 Aligned_cols=28 Identities=43% Similarity=0.601 Sum_probs=24.6
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHHHHhh
Q 003802 13 DDVRFIGICGMGGIGKTTLAKVLYNTLK 40 (794)
Q Consensus 13 ~~~~vi~i~G~~GvGKTtLa~~v~~~~~ 40 (794)
+...+|+|+|++|+||||||+.++....
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4568999999999999999999998654
No 366
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=95.57 E-value=0.012 Score=55.49 Aligned_cols=36 Identities=36% Similarity=0.410 Sum_probs=30.9
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEE
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~ 50 (794)
.++|+|+|+.|+|||||++++.....++|...+...
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~T 37 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSHT 37 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcccccccceeec
Confidence 368999999999999999999999888886655554
No 367
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.57 E-value=0.1 Score=50.96 Aligned_cols=152 Identities=20% Similarity=0.187 Sum_probs=78.6
Q ss_pred CCCeEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEEechhhhcccChHHHHHHHHHHHhccccccccchhhhHHHHH
Q 003802 12 LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIR 91 (794)
Q Consensus 12 ~~~~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~ 91 (794)
+..-+-|.++|++|.||+-||++|+...... |++ ++.. ++....+ + +.+.++..+.
T Consensus 163 R~PwrgiLLyGPPGTGKSYLAKAVATEAnST-----FFS----vSSS----DLvSKWm----G-------ESEkLVknLF 218 (439)
T KOG0739|consen 163 RKPWRGILLYGPPGTGKSYLAKAVATEANST-----FFS----VSSS----DLVSKWM----G-------ESEKLVKNLF 218 (439)
T ss_pred CCcceeEEEeCCCCCcHHHHHHHHHhhcCCc-----eEE----eehH----HHHHHHh----c-------cHHHHHHHHH
Confidence 3346789999999999999999999875433 233 2221 1111111 1 1223444444
Q ss_pred HHhc-CCeEEEEEcCCCCh---------HHHHHHhc----CC---CCCCCCCEEEEEeCChhhhhhc-C--cCcEEEcCC
Q 003802 92 WRLC-RKRVLVILDDVDQL---------EQLQALVG----NH---DWFGFGSRIIITSRDEHVLKSH-G--VTNTYKVRG 151 (794)
Q Consensus 92 ~~l~-~~r~LlVlDd~~~~---------~~~~~l~~----~~---~~~~~gs~IlvTtR~~~v~~~~-~--~~~~~~l~~ 151 (794)
+..+ .|+-.|++|.++.. +..+.+.. .. .....|.-|+-+|...-+.... . -...+- -|
T Consensus 219 emARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgATNiPw~LDsAIRRRFekRIY-IP 297 (439)
T KOG0739|consen 219 EMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIPWVLDSAIRRRFEKRIY-IP 297 (439)
T ss_pred HHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEecCCCchhHHHHHHHHhhccee-cc
Confidence 4443 68899999988532 11222211 11 2223455566667655443221 1 111222 24
Q ss_pred CChHhHH-HHHHhhccCCCCCChhHHHHHHHHHHHhCCCc
Q 003802 152 LDYVEAL-QLFHLKVSNGKQPTDYRVELSKYVVNYAGGLP 190 (794)
Q Consensus 152 L~~~ea~-~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 190 (794)
|++..|. .+|+-+++.. ++...++..+++.++..|..
T Consensus 298 LPe~~AR~~MF~lhlG~t--p~~LT~~d~~eL~~kTeGyS 335 (439)
T KOG0739|consen 298 LPEAHARARMFKLHLGDT--PHVLTEQDFKELARKTEGYS 335 (439)
T ss_pred CCcHHHhhhhheeccCCC--ccccchhhHHHHHhhcCCCC
Confidence 5555555 4666555332 22233445566777776643
No 368
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.57 E-value=0.051 Score=52.81 Aligned_cols=24 Identities=46% Similarity=0.659 Sum_probs=21.9
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhh
Q 003802 17 FIGICGMGGIGKTTLAKVLYNTLK 40 (794)
Q Consensus 17 vi~i~G~~GvGKTtLa~~v~~~~~ 40 (794)
+|+|.|+.|+||||+|+.++..++
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHh
Confidence 589999999999999999998765
No 369
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.56 E-value=0.011 Score=52.19 Aligned_cols=24 Identities=46% Similarity=0.623 Sum_probs=21.9
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhh
Q 003802 17 FIGICGMGGIGKTTLAKVLYNTLK 40 (794)
Q Consensus 17 vi~i~G~~GvGKTtLa~~v~~~~~ 40 (794)
+|.|.|++|+||||+|+.+++...
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~g 25 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLG 25 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhC
Confidence 689999999999999999999753
No 370
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.55 E-value=0.042 Score=59.29 Aligned_cols=27 Identities=30% Similarity=0.325 Sum_probs=23.4
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhhc
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNTLKD 41 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~~~~ 41 (794)
..+|+|+|++|+||||++.+++..+..
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~ 376 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAA 376 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 479999999999999999999876543
No 371
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=95.54 E-value=0.052 Score=54.63 Aligned_cols=35 Identities=26% Similarity=0.369 Sum_probs=25.9
Q ss_pred CCCeEEEEEEccCCCcHHHHHHHHHH-H--hhccccce
Q 003802 12 LDDVRFIGICGMGGIGKTTLAKVLYN-T--LKDQFEAS 46 (794)
Q Consensus 12 ~~~~~vi~i~G~~GvGKTtLa~~v~~-~--~~~~f~~~ 46 (794)
+++...|.+.|.+|.|||.||.+.+- + .+..|..+
T Consensus 242 d~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~Ki 279 (436)
T COG1875 242 DDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKI 279 (436)
T ss_pred CCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceE
Confidence 35788999999999999999986653 2 23445444
No 372
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=95.53 E-value=0.014 Score=56.19 Aligned_cols=22 Identities=27% Similarity=0.233 Sum_probs=20.7
Q ss_pred EEEEEEccCCCcHHHHHHHHHH
Q 003802 16 RFIGICGMGGIGKTTLAKVLYN 37 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~ 37 (794)
.+++|+|+.|.||||+.+.++.
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 6899999999999999999984
No 373
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=95.52 E-value=0.021 Score=50.83 Aligned_cols=37 Identities=27% Similarity=0.356 Sum_probs=27.5
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhh-ccccceEEEEec
Q 003802 16 RFIGICGMGGIGKTTLAKVLYNTLK-DQFEASSFLANV 52 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~~~~-~~f~~~~~~~~~ 52 (794)
++|.|+|..|+|||||++.+.+.+. ..+...++.+..
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik~~~ 38 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRRGYRVAVIKHTD 38 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEE-S
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHcCCceEEEEEcc
Confidence 4899999999999999999999765 556666566543
No 374
>PRK03839 putative kinase; Provisional
Probab=95.49 E-value=0.012 Score=55.44 Aligned_cols=24 Identities=46% Similarity=0.715 Sum_probs=21.8
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhh
Q 003802 17 FIGICGMGGIGKTTLAKVLYNTLK 40 (794)
Q Consensus 17 vi~i~G~~GvGKTtLa~~v~~~~~ 40 (794)
.|.|.|++|+||||+|+.++++..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999999764
No 375
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=95.48 E-value=0.2 Score=49.64 Aligned_cols=24 Identities=29% Similarity=0.432 Sum_probs=20.7
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhh
Q 003802 17 FIGICGMGGIGKTTLAKVLYNTLK 40 (794)
Q Consensus 17 vi~i~G~~GvGKTtLa~~v~~~~~ 40 (794)
+-.|+|++|+|||+||..++..+.
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va 26 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMA 26 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHh
Confidence 567899999999999999987543
No 376
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=95.48 E-value=0.02 Score=54.67 Aligned_cols=25 Identities=44% Similarity=0.436 Sum_probs=21.8
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhh
Q 003802 16 RFIGICGMGGIGKTTLAKVLYNTLK 40 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~~~~ 40 (794)
.++.|+|++|+|||+++.+++..+.
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~ 57 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALA 57 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 4788999999999999999988553
No 377
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.48 E-value=0.057 Score=50.43 Aligned_cols=33 Identities=30% Similarity=0.449 Sum_probs=24.8
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhhccccceEEE
Q 003802 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFL 49 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~ 49 (794)
.+++|.|+.|.|||||++.++-..+ .....+++
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~~-~~~G~i~~ 61 (173)
T cd03246 29 ESLAIIGPSGSGKSTLARLILGLLR-PTSGRVRL 61 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccC-CCCCeEEE
Confidence 5899999999999999999987432 22344444
No 378
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.46 E-value=0.075 Score=51.08 Aligned_cols=24 Identities=33% Similarity=0.396 Sum_probs=21.7
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHh
Q 003802 16 RFIGICGMGGIGKTTLAKVLYNTL 39 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~~~ 39 (794)
.+++|.|+.|+|||||++.++-..
T Consensus 34 e~~~i~G~nGsGKSTLl~~l~G~~ 57 (202)
T cd03233 34 EMVLVLGRPGSGCSTLLKALANRT 57 (202)
T ss_pred cEEEEECCCCCCHHHHHHHhcccC
Confidence 699999999999999999998744
No 379
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=95.45 E-value=0.012 Score=50.46 Aligned_cols=37 Identities=30% Similarity=0.291 Sum_probs=27.5
Q ss_pred hhhHhHhcCCCCeEEEEEEccCCCcHHHHHHHHHHHh
Q 003802 3 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTL 39 (794)
Q Consensus 3 ~l~~~l~~~~~~~~vi~i~G~~GvGKTtLa~~v~~~~ 39 (794)
++.+.+...-+.-.||.+.|.=|+||||++|.+++..
T Consensus 3 ~la~~l~~~l~~g~vi~L~GdLGaGKTtf~r~l~~~l 39 (123)
T PF02367_consen 3 RLAKKLAQILKPGDVILLSGDLGAGKTTFVRGLARAL 39 (123)
T ss_dssp HHHHHHHHHHSS-EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 3444444333445799999999999999999999854
No 380
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=95.45 E-value=0.024 Score=57.75 Aligned_cols=36 Identities=28% Similarity=0.405 Sum_probs=28.1
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEE
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~ 50 (794)
.+++.+.|.|||||||+|...+-...+....+.-++
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvS 37 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVS 37 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEE
Confidence 589999999999999999998776555544455554
No 381
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.45 E-value=0.12 Score=52.44 Aligned_cols=36 Identities=22% Similarity=0.147 Sum_probs=28.1
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhhcc-ccceEEEE
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQ-FEASSFLA 50 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~~~~~-f~~~~~~~ 50 (794)
-.++.|.|++|+|||+++.+++...... -..++|++
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS 66 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDLITQHGVRVGTIS 66 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEE
Confidence 4688899999999999999998765333 34567776
No 382
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.44 E-value=0.014 Score=55.61 Aligned_cols=26 Identities=27% Similarity=0.330 Sum_probs=23.5
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHHHh
Q 003802 14 DVRFIGICGMGGIGKTTLAKVLYNTL 39 (794)
Q Consensus 14 ~~~vi~i~G~~GvGKTtLa~~v~~~~ 39 (794)
+.++|+|.|++|+||||+|+.+++.+
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 46799999999999999999999865
No 383
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.44 E-value=0.058 Score=50.75 Aligned_cols=121 Identities=19% Similarity=0.221 Sum_probs=59.9
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEEechhhhcccChH------HHHHHHHHHHhccc--ccc---ccch
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLV------PLQEQLLSEVLMER--DLI---IWDV 83 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~------~~~~~i~~~~~~~~--~~~---~~~~ 83 (794)
-.+++|.|+.|.|||||++.++-... .....+++.... +.. .... ....++++.+.... ... ....
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~~~-~~~G~v~~~g~~-~~~-~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G 101 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGLLK-PSSGEILLDGKD-LAS-LSPKELARKIAYVPQALELLGLAHLADRPFNELSGG 101 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEE-CCc-CCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHH
Confidence 35899999999999999999987432 234455553211 110 0110 11111233222111 011 1111
Q ss_pred hhhHHHHHHHhcCCeEEEEEcCCCC---hHHHHHHhcCCCCC-CC-CCEEEEEeCChhhh
Q 003802 84 HKGINLIRWRLCRKRVLVILDDVDQ---LEQLQALVGNHDWF-GF-GSRIIITSRDEHVL 138 (794)
Q Consensus 84 ~~~~~~l~~~l~~~r~LlVlDd~~~---~~~~~~l~~~~~~~-~~-gs~IlvTtR~~~v~ 138 (794)
+...-.+.+.+-..+-++++|+... ....+.+...+... .. +..||++|......
T Consensus 102 ~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 102 ERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 2222334555667888999998632 22222222222111 22 56788888876544
No 384
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=95.43 E-value=0.019 Score=53.87 Aligned_cols=26 Identities=50% Similarity=0.703 Sum_probs=22.8
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhhcc
Q 003802 17 FIGICGMGGIGKTTLAKVLYNTLKDQ 42 (794)
Q Consensus 17 vi~i~G~~GvGKTtLa~~v~~~~~~~ 42 (794)
+|+|.|.+|+||||+|+.+....+..
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~ 26 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVN 26 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 58999999999999999999876543
No 385
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=95.41 E-value=0.073 Score=59.39 Aligned_cols=49 Identities=24% Similarity=0.272 Sum_probs=36.5
Q ss_pred hhhhHhHhcCCCCeEEEEEEccCCCcHHHHHHHHHHHhhcc-ccceEEEE
Q 003802 2 EKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ-FEASSFLA 50 (794)
Q Consensus 2 ~~l~~~l~~~~~~~~vi~i~G~~GvGKTtLa~~v~~~~~~~-f~~~~~~~ 50 (794)
+.+.+++..+-+.-+++.|.|.+|+|||++|.+++.....+ =..++|+.
T Consensus 18 ~~LD~~l~GG~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis 67 (509)
T PRK09302 18 EGFDDITHGGLPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVT 67 (509)
T ss_pred hhHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEE
Confidence 34556665555667899999999999999999987744333 45678876
No 386
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=95.40 E-value=0.031 Score=57.57 Aligned_cols=109 Identities=18% Similarity=0.161 Sum_probs=58.3
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEEechhhhcccChHHHHHHHHHHHhccccccccchhhhHHHHHHH
Q 003802 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWR 93 (794)
Q Consensus 14 ~~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~ 93 (794)
.-..+.|+|+.|.||||+++.+...+.... .++.+....+..... ..... +...........-...+.+...
T Consensus 143 ~~~~ili~G~tGsGKTTll~al~~~~~~~~-~iv~ied~~El~~~~------~~~~~-l~~~~~~~~~~~~~~~~~l~~~ 214 (308)
T TIGR02788 143 SRKNIIISGGTGSGKTTFLKSLVDEIPKDE-RIITIEDTREIFLPH------PNYVH-LFYSKGGQGLAKVTPKDLLQSC 214 (308)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHccCCccc-cEEEEcCccccCCCC------CCEEE-EEecCCCCCcCccCHHHHHHHH
Confidence 346899999999999999999987654332 233332211111100 00000 0000000001112234556667
Q ss_pred hcCCeEEEEEcCCCChHHHHHHhcCCCCCCCCCE-EEEEeCC
Q 003802 94 LCRKRVLVILDDVDQLEQLQALVGNHDWFGFGSR-IIITSRD 134 (794)
Q Consensus 94 l~~~r~LlVlDd~~~~~~~~~l~~~~~~~~~gs~-IlvTtR~ 134 (794)
++..+=.+|+|.+...+.++.+.... .|.. ++.|+-.
T Consensus 215 Lr~~pd~ii~gE~r~~e~~~~l~a~~----~g~~~~i~T~Ha 252 (308)
T TIGR02788 215 LRMRPDRIILGELRGDEAFDFIRAVN----TGHPGSITTLHA 252 (308)
T ss_pred hcCCCCeEEEeccCCHHHHHHHHHHh----cCCCeEEEEEeC
Confidence 77888889999999877776544432 2333 4555554
No 387
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.39 E-value=0.014 Score=58.53 Aligned_cols=24 Identities=33% Similarity=0.524 Sum_probs=20.6
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHh
Q 003802 16 RFIGICGMGGIGKTTLAKVLYNTL 39 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~~~ 39 (794)
+-|.++|+.|+|||++++......
T Consensus 34 ~pvLl~G~~GtGKT~li~~~l~~l 57 (272)
T PF12775_consen 34 RPVLLVGPSGTGKTSLIQNFLSSL 57 (272)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCS
T ss_pred CcEEEECCCCCchhHHHHhhhccC
Confidence 466899999999999999988743
No 388
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=95.38 E-value=0.039 Score=52.17 Aligned_cols=21 Identities=24% Similarity=0.120 Sum_probs=19.0
Q ss_pred EEEEEccCCCcHHHHHHHHHH
Q 003802 17 FIGICGMGGIGKTTLAKVLYN 37 (794)
Q Consensus 17 vi~i~G~~GvGKTtLa~~v~~ 37 (794)
++.|+|+.|.||||+.+.++-
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHH
Confidence 478999999999999999984
No 389
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=95.36 E-value=0.056 Score=60.13 Aligned_cols=25 Identities=28% Similarity=0.454 Sum_probs=21.0
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHh
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNTL 39 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~~ 39 (794)
..-|.|+|+.|+|||++|+.+++..
T Consensus 86 ~~~vLi~Ge~GtGKt~lAr~i~~~~ 110 (531)
T TIGR02902 86 PQHVIIYGPPGVGKTAAARLVLEEA 110 (531)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 3456799999999999999998743
No 390
>PRK00625 shikimate kinase; Provisional
Probab=95.34 E-value=0.015 Score=53.98 Aligned_cols=24 Identities=38% Similarity=0.617 Sum_probs=21.6
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhh
Q 003802 17 FIGICGMGGIGKTTLAKVLYNTLK 40 (794)
Q Consensus 17 vi~i~G~~GvGKTtLa~~v~~~~~ 40 (794)
.|.|+|+.|+||||+++.++++..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999998764
No 391
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=95.32 E-value=0.015 Score=54.14 Aligned_cols=26 Identities=46% Similarity=0.507 Sum_probs=24.1
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhh
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNTLK 40 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~~~ 40 (794)
..+|+|-||=|+||||||+.++++.+
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhC
Confidence 46999999999999999999999876
No 392
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.31 E-value=0.19 Score=55.26 Aligned_cols=97 Identities=23% Similarity=0.254 Sum_probs=56.8
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhhccccceEEEEechhhhcccChHHHHHHHHHHHhccccccccchhhhHHHHHHHhc
Q 003802 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWRLC 95 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~ 95 (794)
.=|.++|++|+|||-||-+++....- -+++ +.. .+++...+.. +.+.....+.+.-.
T Consensus 702 ~giLLyGppGcGKT~la~a~a~~~~~-----~fis----vKG----PElL~KyIGa----------SEq~vR~lF~rA~~ 758 (952)
T KOG0735|consen 702 TGILLYGPPGCGKTLLASAIASNSNL-----RFIS----VKG----PELLSKYIGA----------SEQNVRDLFERAQS 758 (952)
T ss_pred cceEEECCCCCcHHHHHHHHHhhCCe-----eEEE----ecC----HHHHHHHhcc----------cHHHHHHHHHHhhc
Confidence 45789999999999999999886432 2343 211 1233333322 23333444444455
Q ss_pred CCeEEEEEcCCCChH-------------HHHHHhcCCCCC--CCCCEEEE-EeCCh
Q 003802 96 RKRVLVILDDVDQLE-------------QLQALVGNHDWF--GFGSRIII-TSRDE 135 (794)
Q Consensus 96 ~~r~LlVlDd~~~~~-------------~~~~l~~~~~~~--~~gs~Ilv-TtR~~ 135 (794)
-++|.+++|.++... ...+++..+... -.|.-|+- |||..
T Consensus 759 a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpd 814 (952)
T KOG0735|consen 759 AKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATSRPD 814 (952)
T ss_pred cCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEecCCcc
Confidence 699999999986542 255665554311 13555553 66654
No 393
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=95.30 E-value=0.012 Score=52.33 Aligned_cols=27 Identities=37% Similarity=0.642 Sum_probs=22.5
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhhccc
Q 003802 17 FIGICGMGGIGKTTLAKVLYNTLKDQF 43 (794)
Q Consensus 17 vi~i~G~~GvGKTtLa~~v~~~~~~~f 43 (794)
.|+|+|+.|+|||||++.++.....+|
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~~~~ 27 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFDPNF 27 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCCccc
Confidence 378999999999999999998654443
No 394
>PF13245 AAA_19: Part of AAA domain
Probab=95.30 E-value=0.037 Score=43.15 Aligned_cols=25 Identities=28% Similarity=0.284 Sum_probs=18.3
Q ss_pred eEEEEEEccCCCcHHHHHH-HHHHHh
Q 003802 15 VRFIGICGMGGIGKTTLAK-VLYNTL 39 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~-~v~~~~ 39 (794)
.+++.|.|++|.|||+++. .+.+.+
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 3578899999999995555 444444
No 395
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.29 E-value=0.0049 Score=34.79 Aligned_cols=18 Identities=67% Similarity=0.946 Sum_probs=10.0
Q ss_pred CCeEeCCCCCCccCchhh
Q 003802 615 LEAIDLSGNNFFSLPSSI 632 (794)
Q Consensus 615 L~~L~L~~n~l~~lp~~l 632 (794)
|++|+|++|+++.+|..+
T Consensus 2 L~~Ldls~n~l~~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSF 19 (22)
T ss_dssp ESEEEETSSEESEEGTTT
T ss_pred ccEEECCCCcCEeCChhh
Confidence 555556655555555443
No 396
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=95.28 E-value=0.023 Score=52.38 Aligned_cols=24 Identities=50% Similarity=0.602 Sum_probs=20.4
Q ss_pred EEEEccCCCcHHHHHHHHHHHhhc
Q 003802 18 IGICGMGGIGKTTLAKVLYNTLKD 41 (794)
Q Consensus 18 i~i~G~~GvGKTtLa~~v~~~~~~ 41 (794)
|.|+|..|+||||+++++++.++.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~ 25 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKK 25 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhhc
Confidence 679999999999999999987643
No 397
>PRK06217 hypothetical protein; Validated
Probab=95.28 E-value=0.079 Score=50.01 Aligned_cols=24 Identities=42% Similarity=0.513 Sum_probs=21.6
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhh
Q 003802 17 FIGICGMGGIGKTTLAKVLYNTLK 40 (794)
Q Consensus 17 vi~i~G~~GvGKTtLa~~v~~~~~ 40 (794)
.|+|.|.+|+||||+|+++++...
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~ 26 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLD 26 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 488999999999999999998753
No 398
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=95.27 E-value=0.34 Score=48.66 Aligned_cols=35 Identities=11% Similarity=-0.067 Sum_probs=26.6
Q ss_pred hhHhHhcCCCCeEEEEEEccCCCcHHHHHHHHHHHh
Q 003802 4 MNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTL 39 (794)
Q Consensus 4 l~~~l~~~~~~~~vi~i~G~~GvGKTtLa~~v~~~~ 39 (794)
+...+..+ .-.+...++|+.|+||+++|..++..+
T Consensus 9 L~~~i~~~-rl~HAyLf~G~~G~Gk~~lA~~~A~~l 43 (290)
T PRK05917 9 LIQRVRDQ-KVPSAIILHGQDLSNLSARAYELASLI 43 (290)
T ss_pred HHHHHHcC-CcCeeEeeECCCCCcHHHHHHHHHHHH
Confidence 44444443 236788899999999999999999854
No 399
>COG4240 Predicted kinase [General function prediction only]
Probab=95.27 E-value=0.047 Score=50.98 Aligned_cols=88 Identities=18% Similarity=0.106 Sum_probs=49.1
Q ss_pred CCCeEEEEEEccCCCcHHHHHHHHHHHhhccc-cceEEEEechhhhcccChHHHHHHHHHHHhccccccccchhhhHHHH
Q 003802 12 LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQF-EASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLI 90 (794)
Q Consensus 12 ~~~~~vi~i~G~~GvGKTtLa~~v~~~~~~~f-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l 90 (794)
.+++-+++|.|+-|.||||++..++....... ..+...+.-.-.-...+...+.++.-.-+....-+..+|..-..+.+
T Consensus 47 ~grPli~gisGpQGSGKStls~~i~~~L~~kg~ert~~lSLDDlYlthadrl~La~q~npllq~RGlpGTHD~tlglnVL 126 (300)
T COG4240 47 RGRPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLSLDDLYLTHADRLRLARQVNPLLQTRGLPGTHDPTLGLNVL 126 (300)
T ss_pred cCCceEEEeecCCCCchhhHHHHHHHHHHHhcccceEEeehhhhhcchHHHHHHHHhcCchhcccCCCCCCchHHHHHHH
Confidence 45688999999999999999999999665544 45555441111111111222222221111112223456666666666
Q ss_pred HHHhcCCeE
Q 003802 91 RWRLCRKRV 99 (794)
Q Consensus 91 ~~~l~~~r~ 99 (794)
..+.+++.-
T Consensus 127 nai~~g~~~ 135 (300)
T COG4240 127 NAIARGGPT 135 (300)
T ss_pred HHHhcCCCC
Confidence 666666643
No 400
>PRK00889 adenylylsulfate kinase; Provisional
Probab=95.26 E-value=0.028 Score=52.67 Aligned_cols=27 Identities=33% Similarity=0.528 Sum_probs=23.9
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhhc
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNTLKD 41 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~~~~ 41 (794)
..+|+|.|.+|+||||+|+.++.....
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l~~ 30 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKLRE 30 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 469999999999999999999997653
No 401
>PRK15453 phosphoribulokinase; Provisional
Probab=95.25 E-value=0.075 Score=52.56 Aligned_cols=28 Identities=21% Similarity=0.440 Sum_probs=24.4
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHHHhhc
Q 003802 14 DVRFIGICGMGGIGKTTLAKVLYNTLKD 41 (794)
Q Consensus 14 ~~~vi~i~G~~GvGKTtLa~~v~~~~~~ 41 (794)
...+|+|.|.+|+||||+|+.+++.++.
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if~~ 31 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIFRR 31 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4579999999999999999999986643
No 402
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.24 E-value=0.023 Score=55.83 Aligned_cols=31 Identities=35% Similarity=0.519 Sum_probs=26.6
Q ss_pred CCCeEEEEEEccCCCcHHHHHHHHHHHhhcc
Q 003802 12 LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ 42 (794)
Q Consensus 12 ~~~~~vi~i~G~~GvGKTtLa~~v~~~~~~~ 42 (794)
.+...+|+|.|+.|+|||||++.++...+..
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~ 60 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQQD 60 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 3567899999999999999999999866543
No 403
>PRK00131 aroK shikimate kinase; Reviewed
Probab=95.24 E-value=0.016 Score=54.27 Aligned_cols=26 Identities=31% Similarity=0.418 Sum_probs=23.3
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhh
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNTLK 40 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~~~ 40 (794)
...|.|+|++|+||||+|+.+++...
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l~ 29 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRLG 29 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 45899999999999999999999863
No 404
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=95.22 E-value=0.075 Score=54.67 Aligned_cols=50 Identities=20% Similarity=0.241 Sum_probs=35.0
Q ss_pred hhhhHhHhcCCCCeEEEEEEccCCCcHHHHHHHHHHHhh--c----cccceEEEEe
Q 003802 2 EKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLK--D----QFEASSFLAN 51 (794)
Q Consensus 2 ~~l~~~l~~~~~~~~vi~i~G~~GvGKTtLa~~v~~~~~--~----~f~~~~~~~~ 51 (794)
+++.++|..+-+.-.++.|+|++|+|||+++..++..+. . .-..++|++.
T Consensus 83 ~~lD~ll~gGi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdt 138 (316)
T TIGR02239 83 KELDKLLGGGIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDT 138 (316)
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEEC
Confidence 345566655555678999999999999999998876321 1 1125688873
No 405
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=95.21 E-value=0.078 Score=53.10 Aligned_cols=89 Identities=15% Similarity=0.097 Sum_probs=51.9
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEEechhhhcccChHHHHHHHHHHHhccccccccchhhhHHHHHHHh
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWRL 94 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l 94 (794)
-.+|.|.|+.|.||||+++.+...+...-..++.+....+.. +. .+ .+ .... ..........++..+
T Consensus 80 ~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~----~~----~~-~q--~~v~--~~~~~~~~~~l~~~l 146 (264)
T cd01129 80 HGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQ----IP----GI-NQ--VQVN--EKAGLTFARGLRAIL 146 (264)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceec----CC----Cc-eE--EEeC--CcCCcCHHHHHHHHh
Confidence 358999999999999999998876643222233332111111 00 00 00 0000 001123456677778
Q ss_pred cCCeEEEEEcCCCChHHHHHHh
Q 003802 95 CRKRVLVILDDVDQLEQLQALV 116 (794)
Q Consensus 95 ~~~r~LlVlDd~~~~~~~~~l~ 116 (794)
+..+=.++++++.+.+....+.
T Consensus 147 R~~PD~i~vgEiR~~e~a~~~~ 168 (264)
T cd01129 147 RQDPDIIMVGEIRDAETAEIAV 168 (264)
T ss_pred ccCCCEEEeccCCCHHHHHHHH
Confidence 8888899999999988655433
No 406
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=95.21 E-value=0.025 Score=58.13 Aligned_cols=39 Identities=23% Similarity=0.358 Sum_probs=29.2
Q ss_pred hhhhHhHhc----CCCCeEEEEEEccCCCcHHHHHHHHHHHhh
Q 003802 2 EKMNGYLEA----GLDDVRFIGICGMGGIGKTTLAKVLYNTLK 40 (794)
Q Consensus 2 ~~l~~~l~~----~~~~~~vi~i~G~~GvGKTtLa~~v~~~~~ 40 (794)
+++.+++.. .....+++.|+|++|+||||+|+.+++.+.
T Consensus 61 ~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~ 103 (361)
T smart00763 61 ERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLE 103 (361)
T ss_pred HHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 344555543 133468999999999999999999998653
No 407
>PRK08356 hypothetical protein; Provisional
Probab=95.21 E-value=0.16 Score=48.55 Aligned_cols=21 Identities=38% Similarity=0.542 Sum_probs=19.3
Q ss_pred EEEEEEccCCCcHHHHHHHHH
Q 003802 16 RFIGICGMGGIGKTTLAKVLY 36 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~ 36 (794)
.+|+|.|+.|+||||+|+.+.
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l~ 26 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFFE 26 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 578999999999999999994
No 408
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=95.21 E-value=0.036 Score=54.39 Aligned_cols=41 Identities=29% Similarity=0.415 Sum_probs=32.1
Q ss_pred hhhHhHhcCCCCeEEEEEEccCCCcHHHHHHHHHHHhhccc
Q 003802 3 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQF 43 (794)
Q Consensus 3 ~l~~~l~~~~~~~~vi~i~G~~GvGKTtLa~~v~~~~~~~f 43 (794)
++...+....++..+|+|+|.+|+|||||.-++..++.++=
T Consensus 39 ~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G 79 (323)
T COG1703 39 ELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERG 79 (323)
T ss_pred HHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCC
Confidence 34455555566789999999999999999999988665443
No 409
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=95.20 E-value=0.018 Score=54.01 Aligned_cols=25 Identities=32% Similarity=0.493 Sum_probs=22.5
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhh
Q 003802 16 RFIGICGMGGIGKTTLAKVLYNTLK 40 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~~~~ 40 (794)
++|.+.|++|+||||+|+++.....
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~ 27 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLA 27 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhC
Confidence 5899999999999999999988653
No 410
>PTZ00088 adenylate kinase 1; Provisional
Probab=95.20 E-value=0.045 Score=53.34 Aligned_cols=22 Identities=36% Similarity=0.558 Sum_probs=20.6
Q ss_pred EEEEccCCCcHHHHHHHHHHHh
Q 003802 18 IGICGMGGIGKTTLAKVLYNTL 39 (794)
Q Consensus 18 i~i~G~~GvGKTtLa~~v~~~~ 39 (794)
|.|.|++|+||||+|+.+++++
T Consensus 9 Ivl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8899999999999999999875
No 411
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.18 E-value=0.042 Score=57.15 Aligned_cols=25 Identities=28% Similarity=0.319 Sum_probs=22.2
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHh
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNTL 39 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~~ 39 (794)
-|=-.++||+|.|||+++.++++..
T Consensus 235 KRGYLLYGPPGTGKSS~IaAmAn~L 259 (457)
T KOG0743|consen 235 KRGYLLYGPPGTGKSSFIAAMANYL 259 (457)
T ss_pred hccceeeCCCCCCHHHHHHHHHhhc
Confidence 4667899999999999999999864
No 412
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=95.18 E-value=0.076 Score=48.61 Aligned_cols=31 Identities=23% Similarity=0.019 Sum_probs=23.4
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHh-hccccc
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNTL-KDQFEA 45 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~~-~~~f~~ 45 (794)
...|-|++..|.||||.|..++.+. ...+.+
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v 36 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRALGHGKKV 36 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHHHHCCCeE
Confidence 3578888889999999999888754 333433
No 413
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=95.18 E-value=0.035 Score=54.30 Aligned_cols=35 Identities=14% Similarity=0.264 Sum_probs=27.7
Q ss_pred hhHhHhc-CCCCeEEEEEEccCCCcHHHHHHHHHHH
Q 003802 4 MNGYLEA-GLDDVRFIGICGMGGIGKTTLAKVLYNT 38 (794)
Q Consensus 4 l~~~l~~-~~~~~~vi~i~G~~GvGKTtLa~~v~~~ 38 (794)
+.+.+.. .+..+-|++++|+.|+||.-+++.+++.
T Consensus 98 lk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n 133 (344)
T KOG2170|consen 98 LKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAEN 133 (344)
T ss_pred HHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHH
Confidence 4444443 3456889999999999999999999984
No 414
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=95.17 E-value=0.062 Score=61.89 Aligned_cols=26 Identities=31% Similarity=0.364 Sum_probs=23.1
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhh
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNTLK 40 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~~~ 40 (794)
...+.++|+.|+|||++|+.++....
T Consensus 488 ~~~~Lf~GP~GvGKT~lAk~LA~~l~ 513 (758)
T PRK11034 488 VGSFLFAGPTGVGKTEVTVQLSKALG 513 (758)
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhC
Confidence 45789999999999999999998763
No 415
>PRK03846 adenylylsulfate kinase; Provisional
Probab=95.13 E-value=0.034 Score=53.28 Aligned_cols=38 Identities=24% Similarity=0.303 Sum_probs=28.9
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEE
Q 003802 13 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (794)
Q Consensus 13 ~~~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~ 50 (794)
....+|+|+|.+|+||||+|+.+.......-...++++
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld 59 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLD 59 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEc
Confidence 45689999999999999999999987644323345553
No 416
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=95.13 E-value=0.4 Score=48.30 Aligned_cols=67 Identities=18% Similarity=0.221 Sum_probs=41.6
Q ss_pred CCeEEEEEcCCCChH--HHHHHhcCCCCCCCCCEEEEEeCC-hhhhhhc-CcCcEEEcCCCChHhHHHHHHh
Q 003802 96 RKRVLVILDDVDQLE--QLQALVGNHDWFGFGSRIIITSRD-EHVLKSH-GVTNTYKVRGLDYVEALQLFHL 163 (794)
Q Consensus 96 ~~r~LlVlDd~~~~~--~~~~l~~~~~~~~~gs~IlvTtR~-~~v~~~~-~~~~~~~l~~L~~~ea~~lf~~ 163 (794)
+++-++|+|+++.+. ....++..+....+++.+|++|.+ ..+.... +....+.+.+ +.++..+.+.+
T Consensus 103 ~~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLpTI~SRcq~i~f~~-~~~~~~~~L~~ 173 (290)
T PRK07276 103 GKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKSRTQIFHFPK-NEAYLIQLLEQ 173 (290)
T ss_pred CCcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECChhhCchHHHHcceeeeCCC-cHHHHHHHHHH
Confidence 566789999998774 466776666544556666666654 3443332 3344677766 66666666653
No 417
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=95.11 E-value=0.072 Score=54.00 Aligned_cols=114 Identities=18% Similarity=0.217 Sum_probs=65.4
Q ss_pred hhhHhHhcCCCCeEEEEEEccCCCcHHHHHHHHHHHhhccccceEEE-EechhhhcccChHHHHHHHHHHHhccccccc-
Q 003802 3 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFL-ANVREVSVTRGLVPLQEQLLSEVLMERDLII- 80 (794)
Q Consensus 3 ~l~~~l~~~~~~~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~- 80 (794)
++.+++...-..-+.|.|.|+.|.||||++..+...+... ...+.+ ....+... .. ........
T Consensus 115 ~~~~~l~~~v~~~~~ili~G~tGSGKTT~l~all~~i~~~-~~~iv~iEd~~E~~l------------~~-~~~~~~~~~ 180 (270)
T PF00437_consen 115 EIAEFLRSAVRGRGNILISGPTGSGKTTLLNALLEEIPPE-DERIVTIEDPPELRL------------PG-PNQIQIQTR 180 (270)
T ss_dssp HHHHHHHHCHHTTEEEEEEESTTSSHHHHHHHHHHHCHTT-TSEEEEEESSS-S--------------SC-SSEEEEEEE
T ss_pred HHHHHHhhccccceEEEEECCCccccchHHHHHhhhcccc-ccceEEeccccceee------------cc-cceEEEEee
Confidence 4455555542335789999999999999999999866555 333333 21111100 00 00000001
Q ss_pred cchhhhHHHHHHHhcCCeEEEEEcCCCChHHHHHHhcCCCCCCCCCEE-EEEeCC
Q 003802 81 WDVHKGINLIRWRLCRKRVLVILDDVDQLEQLQALVGNHDWFGFGSRI-IITSRD 134 (794)
Q Consensus 81 ~~~~~~~~~l~~~l~~~r~LlVlDd~~~~~~~~~l~~~~~~~~~gs~I-lvTtR~ 134 (794)
.+.....+.++..|+..+=.+|++++.+.+.+..+... ..|..+ +-|...
T Consensus 181 ~~~~~~~~~l~~~LR~~pD~iiigEiR~~e~~~~~~a~----~tGh~~~~tT~Ha 231 (270)
T PF00437_consen 181 RDEISYEDLLKSALRQDPDVIIIGEIRDPEAAEAIQAA----NTGHLGSLTTLHA 231 (270)
T ss_dssp TTTBSHHHHHHHHTTS--SEEEESCE-SCHHHHHHHHH----HTT-EEEEEEEE-
T ss_pred cCcccHHHHHHHHhcCCCCcccccccCCHhHHHHHHhh----ccCCceeeeeeec
Confidence 23445566777888888889999999998887775444 357777 555543
No 418
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=95.10 E-value=0.072 Score=54.84 Aligned_cols=23 Identities=43% Similarity=0.729 Sum_probs=20.7
Q ss_pred EEEEccCCCcHHHHHHHHHHHhh
Q 003802 18 IGICGMGGIGKTTLAKVLYNTLK 40 (794)
Q Consensus 18 i~i~G~~GvGKTtLa~~v~~~~~ 40 (794)
+++.|+.|+||||+++.+.....
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~ 24 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLR 24 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHH
Confidence 67999999999999999998664
No 419
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=95.08 E-value=0.042 Score=56.08 Aligned_cols=91 Identities=23% Similarity=0.233 Sum_probs=53.5
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhhcccc-ceE-EEEechhhhcccChHHHHHHHHHHHhccccccccchhhhHHHHHHH
Q 003802 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFE-ASS-FLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWR 93 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~~~~~~f~-~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~ 93 (794)
+.|.|.|+.|+||||+++.+...+....+ .++ -+....+..... .. ....... .......+.++..
T Consensus 133 ~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~------~~---~v~~~~~---~~~~~~~~~l~~a 200 (299)
T TIGR02782 133 KNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAA------PN---VVQLRTS---DDAISMTRLLKAT 200 (299)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCC------CC---EEEEEec---CCCCCHHHHHHHH
Confidence 46779999999999999999987755322 222 222111111000 00 0000000 0111455677788
Q ss_pred hcCCeEEEEEcCCCChHHHHHHhcC
Q 003802 94 LCRKRVLVILDDVDQLEQLQALVGN 118 (794)
Q Consensus 94 l~~~r~LlVlDd~~~~~~~~~l~~~ 118 (794)
|+..+=-+|++.+.+.+.++.+...
T Consensus 201 LR~~pD~iivGEiR~~ea~~~l~a~ 225 (299)
T TIGR02782 201 LRLRPDRIIVGEVRGGEALDLLKAW 225 (299)
T ss_pred hcCCCCEEEEeccCCHHHHHHHHHH
Confidence 8888888999999988877655443
No 420
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=95.08 E-value=0.045 Score=52.54 Aligned_cols=22 Identities=36% Similarity=0.280 Sum_probs=20.6
Q ss_pred EEEEEEccCCCcHHHHHHHHHH
Q 003802 16 RFIGICGMGGIGKTTLAKVLYN 37 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~ 37 (794)
+++.|+|+.|.||||+.+.+..
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~~ 50 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLGL 50 (200)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 7999999999999999999884
No 421
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=95.08 E-value=0.039 Score=50.70 Aligned_cols=28 Identities=36% Similarity=0.452 Sum_probs=24.9
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHHHhhc
Q 003802 14 DVRFIGICGMGGIGKTTLAKVLYNTLKD 41 (794)
Q Consensus 14 ~~~vi~i~G~~GvGKTtLa~~v~~~~~~ 41 (794)
..++++|+|..|+|||||++.+....+.
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~ 32 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCA 32 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhh
Confidence 4679999999999999999999987654
No 422
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=95.07 E-value=0.085 Score=53.66 Aligned_cols=88 Identities=19% Similarity=0.137 Sum_probs=49.9
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEEechhhhcccChHHHHHHHHHHHhccccc----cccchhhhHH
Q 003802 13 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDL----IIWDVHKGIN 88 (794)
Q Consensus 13 ~~~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~~ 88 (794)
+.-+++-|+|+.|+||||||..+.......-..++|++..+ ..+ ...+..++...+. .+...++...
T Consensus 51 p~G~ivEi~G~~ssGKttLaL~~ia~~q~~g~~~a~ID~e~----~ld-----~~~a~~lGvdl~rllv~~P~~~E~al~ 121 (322)
T PF00154_consen 51 PRGRIVEIYGPESSGKTTLALHAIAEAQKQGGICAFIDAEH----ALD-----PEYAESLGVDLDRLLVVQPDTGEQALW 121 (322)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHTT-EEEEEESSS------------HHHHHHTT--GGGEEEEE-SSHHHHHH
T ss_pred ccCceEEEeCCCCCchhhhHHHHHHhhhcccceeEEecCcc----cch-----hhHHHhcCccccceEEecCCcHHHHHH
Confidence 34579999999999999999999887655556778987322 111 2233332222211 2233344444
Q ss_pred HHHHHhc-CCeEEEEEcCCCCh
Q 003802 89 LIRWRLC-RKRVLVILDDVDQL 109 (794)
Q Consensus 89 ~l~~~l~-~~r~LlVlDd~~~~ 109 (794)
...+.++ +.--++|+|.|...
T Consensus 122 ~~e~lirsg~~~lVVvDSv~al 143 (322)
T PF00154_consen 122 IAEQLIRSGAVDLVVVDSVAAL 143 (322)
T ss_dssp HHHHHHHTTSESEEEEE-CTT-
T ss_pred HHHHHhhcccccEEEEecCccc
Confidence 4445444 34458899987554
No 423
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.06 E-value=0.14 Score=48.66 Aligned_cols=22 Identities=41% Similarity=0.578 Sum_probs=20.6
Q ss_pred EEEEEEccCCCcHHHHHHHHHH
Q 003802 16 RFIGICGMGGIGKTTLAKVLYN 37 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~ 37 (794)
.+++|.|+.|.|||||++.++-
T Consensus 34 e~~~l~G~nGsGKSTLl~~l~G 55 (192)
T cd03232 34 TLTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 6899999999999999999985
No 424
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=95.06 E-value=0.34 Score=50.50 Aligned_cols=40 Identities=33% Similarity=0.333 Sum_probs=30.8
Q ss_pred hhhhHhHhcC-------CCCeEEEEEEccCCCcHHHHHHHHHHHhhc
Q 003802 2 EKMNGYLEAG-------LDDVRFIGICGMGGIGKTTLAKVLYNTLKD 41 (794)
Q Consensus 2 ~~l~~~l~~~-------~~~~~vi~i~G~~GvGKTtLa~~v~~~~~~ 41 (794)
+++.+++... ...+.||.++|.-|.||||-|-++++.++.
T Consensus 80 eELv~llG~~~~~~~l~~~~P~vImmvGLQGsGKTTt~~KLA~~lkk 126 (451)
T COG0541 80 EELVKLLGGENSELNLAKKPPTVILMVGLQGSGKTTTAGKLAKYLKK 126 (451)
T ss_pred HHHHHHhCCCCcccccCCCCCeEEEEEeccCCChHhHHHHHHHHHHH
Confidence 4566666531 223689999999999999999999987766
No 425
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=95.06 E-value=0.026 Score=57.73 Aligned_cols=34 Identities=32% Similarity=0.445 Sum_probs=25.2
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhhccccceEEE
Q 003802 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFL 49 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~ 49 (794)
|+|.+.|.|||||||+|...+-...++=..+..+
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlv 35 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALARRGKRTLLV 35 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEE
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEe
Confidence 6899999999999999998887554432334444
No 426
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.05 E-value=0.37 Score=54.33 Aligned_cols=153 Identities=18% Similarity=0.225 Sum_probs=81.5
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEEechhhhcccChHHHHHHHHHHHhccccccccchhhhHHHHHHHh
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWRL 94 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l 94 (794)
++=+.|+|++|+|||-||++++-... +-|+. ++... ......... ...++.+....
T Consensus 344 PkGvLL~GPPGTGKTLLAKAiAGEAg-----VPF~s----vSGSE--------FvE~~~g~~-------asrvr~lf~~a 399 (774)
T KOG0731|consen 344 PKGVLLVGPPGTGKTLLAKAIAGEAG-----VPFFS----VSGSE--------FVEMFVGVG-------ASRVRDLFPLA 399 (774)
T ss_pred cCceEEECCCCCcHHHHHHHHhcccC-----Cceee----echHH--------HHHHhcccc-------hHHHHHHHHHh
Confidence 56788999999999999999998632 23333 11111 111100000 01122222222
Q ss_pred -cCCeEEEEEcCCCChH-----------------HHHHHhcCCCCCCCCC-EEEE-EeCChhhhh-h-c---CcCcEEEc
Q 003802 95 -CRKRVLVILDDVDQLE-----------------QLQALVGNHDWFGFGS-RIII-TSRDEHVLK-S-H---GVTNTYKV 149 (794)
Q Consensus 95 -~~~r~LlVlDd~~~~~-----------------~~~~l~~~~~~~~~gs-~Ilv-TtR~~~v~~-~-~---~~~~~~~l 149 (794)
+..++.+.+|+++... .+.+++.......... .|++ +|+...+.. . + .-+..+.+
T Consensus 400 r~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i 479 (774)
T KOG0731|consen 400 RKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDILDPALLRPGRFDRQIQI 479 (774)
T ss_pred hccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccccCHHhcCCCccccceec
Confidence 2467888888774331 1555555443222223 3333 444333321 1 1 23556777
Q ss_pred CCCChHhHHHHHHhhccCCCCCChhHHHHHHHHHHHhCCCchHH
Q 003802 150 RGLDYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAI 193 (794)
Q Consensus 150 ~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 193 (794)
+.=+.....++|.-++..-.-. ....++.+ |+....|.+=|.
T Consensus 480 ~~p~~~~r~~i~~~h~~~~~~~-~e~~dl~~-~a~~t~gf~gad 521 (774)
T KOG0731|consen 480 DLPDVKGRASILKVHLRKKKLD-DEDVDLSK-LASLTPGFSGAD 521 (774)
T ss_pred cCCchhhhHHHHHHHhhccCCC-cchhhHHH-HHhcCCCCcHHH
Confidence 7777888888998877332222 23335555 888888877543
No 427
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=95.04 E-value=0.18 Score=56.62 Aligned_cols=37 Identities=16% Similarity=0.117 Sum_probs=25.8
Q ss_pred hhhHhHhcCCCCeEEEEEEccCCCcHHHHHHHHHHHh
Q 003802 3 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTL 39 (794)
Q Consensus 3 ~l~~~l~~~~~~~~vi~i~G~~GvGKTtLa~~v~~~~ 39 (794)
++.+.+.........|.|+|..|+|||++|+.+.+.-
T Consensus 207 ~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s 243 (534)
T TIGR01817 207 QVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLS 243 (534)
T ss_pred HHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhC
Confidence 3444443322233467799999999999999998853
No 428
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=95.03 E-value=0.086 Score=51.61 Aligned_cols=57 Identities=16% Similarity=0.198 Sum_probs=34.9
Q ss_pred hhhHHHHHHHhcCCeEEEEEcCCCCh------HH-HHHHhcCCCCCCCCCEEEEEeCChhhhhhcC
Q 003802 84 HKGINLIRWRLCRKRVLVILDDVDQL------EQ-LQALVGNHDWFGFGSRIIITSRDEHVLKSHG 142 (794)
Q Consensus 84 ~~~~~~l~~~l~~~r~LlVlDd~~~~------~~-~~~l~~~~~~~~~gs~IlvTtR~~~v~~~~~ 142 (794)
+.....+...+.++.=++++|+--.. .+ ++-+... . ...|..||+++-+-..|...+
T Consensus 143 erQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l-~-~~~~~tvv~vlHDlN~A~rya 206 (258)
T COG1120 143 ERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDL-N-REKGLTVVMVLHDLNLAARYA 206 (258)
T ss_pred HHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHH-H-HhcCCEEEEEecCHHHHHHhC
Confidence 34455677788889889999975222 11 2222221 1 134777999999887766544
No 429
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=94.99 E-value=0.2 Score=47.39 Aligned_cols=27 Identities=33% Similarity=0.479 Sum_probs=24.0
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHHHhh
Q 003802 14 DVRFIGICGMGGIGKTTLAKVLYNTLK 40 (794)
Q Consensus 14 ~~~vi~i~G~~GvGKTtLa~~v~~~~~ 40 (794)
...+|.|.|.+|+||||+|+.+.....
T Consensus 17 ~~~~i~i~G~~GsGKstla~~l~~~l~ 43 (184)
T TIGR00455 17 RGVVIWLTGLSGSGKSTIANALEKKLE 43 (184)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 357999999999999999999998764
No 430
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=94.97 E-value=0.21 Score=47.72 Aligned_cols=21 Identities=24% Similarity=0.431 Sum_probs=19.5
Q ss_pred EEEEEccCCCcHHHHHHHHHH
Q 003802 17 FIGICGMGGIGKTTLAKVLYN 37 (794)
Q Consensus 17 vi~i~G~~GvGKTtLa~~v~~ 37 (794)
+++|+|+.|+|||||++.++-
T Consensus 24 ~~~i~G~nGsGKStll~al~~ 44 (197)
T cd03278 24 LTAIVGPNGSGKSNIIDAIRW 44 (197)
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 889999999999999999864
No 431
>PRK13947 shikimate kinase; Provisional
Probab=94.97 E-value=0.021 Score=53.36 Aligned_cols=25 Identities=40% Similarity=0.408 Sum_probs=22.2
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhhc
Q 003802 17 FIGICGMGGIGKTTLAKVLYNTLKD 41 (794)
Q Consensus 17 vi~i~G~~GvGKTtLa~~v~~~~~~ 41 (794)
.|.|.|++|+||||+|+.++++..-
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~ 27 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSF 27 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 4889999999999999999997643
No 432
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=94.96 E-value=0.089 Score=54.51 Aligned_cols=50 Identities=22% Similarity=0.304 Sum_probs=34.9
Q ss_pred hhhhHhHhcCCCCeEEEEEEccCCCcHHHHHHHHHHHhh-----c-cccceEEEEe
Q 003802 2 EKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLK-----D-QFEASSFLAN 51 (794)
Q Consensus 2 ~~l~~~l~~~~~~~~vi~i~G~~GvGKTtLa~~v~~~~~-----~-~f~~~~~~~~ 51 (794)
+++.++|..+-..-.++-|+|.+|+|||+++..++-.+. . .-..++|++.
T Consensus 110 ~~LD~lL~GG~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdt 165 (342)
T PLN03186 110 RELDKILEGGIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDT 165 (342)
T ss_pred HHHHHhhcCCCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEEC
Confidence 345555655545578999999999999999998875322 1 1125789873
No 433
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=94.96 E-value=0.027 Score=51.39 Aligned_cols=25 Identities=36% Similarity=0.488 Sum_probs=22.6
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHh
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNTL 39 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~~ 39 (794)
-.+++|.||+|+|||||++++..+.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 3688999999999999999999875
No 434
>PRK05439 pantothenate kinase; Provisional
Probab=94.94 E-value=0.13 Score=52.35 Aligned_cols=30 Identities=33% Similarity=0.407 Sum_probs=25.5
Q ss_pred CCCeEEEEEEccCCCcHHHHHHHHHHHhhc
Q 003802 12 LDDVRFIGICGMGGIGKTTLAKVLYNTLKD 41 (794)
Q Consensus 12 ~~~~~vi~i~G~~GvGKTtLa~~v~~~~~~ 41 (794)
....-+|+|.|.+|+||||+|+.+....+.
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~~l~~ 112 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQALLSR 112 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 345789999999999999999999886543
No 435
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=94.94 E-value=0.044 Score=51.79 Aligned_cols=26 Identities=46% Similarity=0.719 Sum_probs=21.6
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhhcc
Q 003802 17 FIGICGMGGIGKTTLAKVLYNTLKDQ 42 (794)
Q Consensus 17 vi~i~G~~GvGKTtLa~~v~~~~~~~ 42 (794)
.|+|+|-||+||||+|..++.++.++
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~ 27 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSK 27 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhc
Confidence 58999999999999999977654443
No 436
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=94.94 E-value=0.18 Score=50.19 Aligned_cols=46 Identities=20% Similarity=0.286 Sum_probs=32.5
Q ss_pred hhHhHhcCCCCeEEEEEEccCCCcHHHHHHHHHHHhhcc-ccceEEEE
Q 003802 4 MNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ-FEASSFLA 50 (794)
Q Consensus 4 l~~~l~~~~~~~~vi~i~G~~GvGKTtLa~~v~~~~~~~-f~~~~~~~ 50 (794)
|.+++. +-..-.++.|.|.+|+|||++|.+++...... =..+.|++
T Consensus 3 LD~~~~-Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s 49 (242)
T cd00984 3 LDNLTG-GLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFS 49 (242)
T ss_pred hhhhhc-CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEe
Confidence 444554 44445799999999999999999987754332 34566665
No 437
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=94.92 E-value=0.15 Score=48.95 Aligned_cols=23 Identities=35% Similarity=0.525 Sum_probs=21.0
Q ss_pred EEEEEEccCCCcHHHHHHHHHHH
Q 003802 16 RFIGICGMGGIGKTTLAKVLYNT 38 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~~ 38 (794)
.+++|+|+.|.|||||++.++-.
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 27 EVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 68999999999999999998764
No 438
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=94.92 E-value=0.08 Score=51.57 Aligned_cols=49 Identities=18% Similarity=0.302 Sum_probs=31.8
Q ss_pred HHHHHHHhcCCeEEEEEcCC----CCh--HHHHHHhcCCCCCCCCCEEEEEeCChhh
Q 003802 87 INLIRWRLCRKRVLVILDDV----DQL--EQLQALVGNHDWFGFGSRIIITSRDEHV 137 (794)
Q Consensus 87 ~~~l~~~l~~~r~LlVlDd~----~~~--~~~~~l~~~~~~~~~gs~IlvTtR~~~v 137 (794)
...+.+.|.+++=|+++|.- |.. ...-+++..+. ..|..|++.|-+-..
T Consensus 147 RV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~--~eg~tIl~vtHDL~~ 201 (254)
T COG1121 147 RVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELR--QEGKTVLMVTHDLGL 201 (254)
T ss_pred HHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHH--HCCCEEEEEeCCcHH
Confidence 34567778899999999974 222 22344444443 238889999988543
No 439
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=94.91 E-value=0.084 Score=60.21 Aligned_cols=96 Identities=18% Similarity=0.169 Sum_probs=55.7
Q ss_pred hhhHhHh-cCCCCeEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEEechhhhcccChHHHHHHHHHHHhcccc----
Q 003802 3 KMNGYLE-AGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERD---- 77 (794)
Q Consensus 3 ~l~~~l~-~~~~~~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---- 77 (794)
++..+|. .+-+.-+++-|+|+.|+||||||.+++......=..++|++.... .+ ...++.++...+
T Consensus 47 ~LD~lLg~GGip~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t----~~-----~~~A~~lGvDl~~llv 117 (790)
T PRK09519 47 ALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHA----LD-----PDYAKKLGVDTDSLLV 117 (790)
T ss_pred HHHHhhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccc----hh-----HHHHHHcCCChhHeEE
Confidence 4556665 445567899999999999999998877654444456788873221 11 113333222111
Q ss_pred ccccchhhhHHHHHHHhc-CCeEEEEEcCCC
Q 003802 78 LIIWDVHKGINLIRWRLC-RKRVLVILDDVD 107 (794)
Q Consensus 78 ~~~~~~~~~~~~l~~~l~-~~r~LlVlDd~~ 107 (794)
..+...+.....+....+ ++--++|+|.+.
T Consensus 118 ~~~~~~E~~l~~i~~lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 118 SQPDTGEQALEIADMLIRSGALDIVVIDSVA 148 (790)
T ss_pred ecCCCHHHHHHHHHHHhhcCCCeEEEEcchh
Confidence 111222334444555444 456789999873
No 440
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=94.91 E-value=0.18 Score=46.61 Aligned_cols=22 Identities=36% Similarity=0.593 Sum_probs=20.0
Q ss_pred EEEEccCCCcHHHHHHHHHHHh
Q 003802 18 IGICGMGGIGKTTLAKVLYNTL 39 (794)
Q Consensus 18 i~i~G~~GvGKTtLa~~v~~~~ 39 (794)
|.|.|+.|+||||+|+.+.+..
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999875
No 441
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=94.90 E-value=0.12 Score=47.99 Aligned_cols=26 Identities=19% Similarity=0.036 Sum_probs=22.2
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhh
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNTLK 40 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~~~ 40 (794)
...|.|+|..|-||||.|..++.+..
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~ra~ 47 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMALRAV 47 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHHHHH
Confidence 46889999999999999998887543
No 442
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=94.89 E-value=0.095 Score=46.68 Aligned_cols=34 Identities=26% Similarity=0.104 Sum_probs=25.4
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhhc--cccceEEEE
Q 003802 17 FIGICGMGGIGKTTLAKVLYNTLKD--QFEASSFLA 50 (794)
Q Consensus 17 vi~i~G~~GvGKTtLa~~v~~~~~~--~f~~~~~~~ 50 (794)
.+.|.|+.|.|||+.+..+..+... ....++|+.
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~ 37 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLA 37 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEc
Confidence 4789999999999999988875433 345556653
No 443
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=94.88 E-value=0.019 Score=53.72 Aligned_cols=23 Identities=52% Similarity=0.764 Sum_probs=21.3
Q ss_pred EEEEEccCCCcHHHHHHHHHHHh
Q 003802 17 FIGICGMGGIGKTTLAKVLYNTL 39 (794)
Q Consensus 17 vi~i~G~~GvGKTtLa~~v~~~~ 39 (794)
+|+|.|.+|+||||+|+.++...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999875
No 444
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=94.88 E-value=0.055 Score=56.19 Aligned_cols=37 Identities=22% Similarity=0.048 Sum_probs=26.2
Q ss_pred hhhhHhHhcCCCCeEEEEEEccCCCcHHHHHHHHHHH
Q 003802 2 EKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNT 38 (794)
Q Consensus 2 ~~l~~~l~~~~~~~~vi~i~G~~GvGKTtLa~~v~~~ 38 (794)
+++.+.+........-|.|+|..|+||+++|+.+.+.
T Consensus 9 ~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~ 45 (329)
T TIGR02974 9 LEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYL 45 (329)
T ss_pred HHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHh
Confidence 3444444433233456789999999999999999874
No 445
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=94.87 E-value=0.073 Score=56.14 Aligned_cols=22 Identities=45% Similarity=0.724 Sum_probs=20.1
Q ss_pred EEEEEEccCCCcHHHHHHHHHH
Q 003802 16 RFIGICGMGGIGKTTLAKVLYN 37 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~ 37 (794)
.+++|.|++|.||||||+.+.-
T Consensus 363 ~~lgIIGPSgSGKSTLaR~lvG 384 (580)
T COG4618 363 EALGIIGPSGSGKSTLARLLVG 384 (580)
T ss_pred ceEEEECCCCccHHHHHHHHHc
Confidence 5789999999999999999864
No 446
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.87 E-value=0.13 Score=49.82 Aligned_cols=23 Identities=17% Similarity=-0.032 Sum_probs=20.9
Q ss_pred eEEEEEEccCCCcHHHHHHHHHH
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYN 37 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~ 37 (794)
.+++.|.|+.|.||||+.+.++-
T Consensus 31 g~~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 31 GYCQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46889999999999999999877
No 447
>PRK14738 gmk guanylate kinase; Provisional
Probab=94.86 E-value=0.025 Score=54.48 Aligned_cols=28 Identities=18% Similarity=0.279 Sum_probs=23.8
Q ss_pred CCCCeEEEEEEccCCCcHHHHHHHHHHH
Q 003802 11 GLDDVRFIGICGMGGIGKTTLAKVLYNT 38 (794)
Q Consensus 11 ~~~~~~vi~i~G~~GvGKTtLa~~v~~~ 38 (794)
..+..++|+|+|++|+|||||++.+...
T Consensus 9 ~~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 9 KPAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 3456789999999999999999998753
No 448
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=94.86 E-value=2.3 Score=41.90 Aligned_cols=25 Identities=4% Similarity=-0.096 Sum_probs=21.9
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHh
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNTL 39 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~~ 39 (794)
.+.+.++|+.|+||.++|.+++..+
T Consensus 7 ~HA~Lf~G~~G~G~~~lA~~~A~~l 31 (261)
T PRK05818 7 THPLLLIERKGSFLKPFLYEYLTSI 31 (261)
T ss_pred CcceeeeCCCCCcHHHHHHHHHHHH
Confidence 4678899999999999999998754
No 449
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=94.85 E-value=0.032 Score=49.56 Aligned_cols=25 Identities=36% Similarity=0.608 Sum_probs=22.6
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHh
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNTL 39 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~~ 39 (794)
.++|+|+|.+|+||||+.+.+....
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l 28 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL 28 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH
Confidence 6899999999999999999888765
No 450
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=94.84 E-value=0.022 Score=51.54 Aligned_cols=23 Identities=48% Similarity=0.660 Sum_probs=21.3
Q ss_pred EEEEEccCCCcHHHHHHHHHHHh
Q 003802 17 FIGICGMGGIGKTTLAKVLYNTL 39 (794)
Q Consensus 17 vi~i~G~~GvGKTtLa~~v~~~~ 39 (794)
+|.|.|+.|+||||+|++++...
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999875
No 451
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=94.84 E-value=0.14 Score=57.26 Aligned_cols=49 Identities=24% Similarity=0.268 Sum_probs=36.8
Q ss_pred hhhhHhHhcCCCCeEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEE
Q 003802 2 EKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (794)
Q Consensus 2 ~~l~~~l~~~~~~~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~ 50 (794)
+.+.+++..+-+.-.++.|.|.+|+|||++|.+++......-..++|++
T Consensus 260 ~~lD~~l~GG~~~g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis 308 (509)
T PRK09302 260 PDLDEMLGGGFFRGSIILVSGATGTGKTLLASKFAEAACRRGERCLLFA 308 (509)
T ss_pred HHHHHhhcCCCCCCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEE
Confidence 3455666545455678999999999999999999876544456778876
No 452
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=94.83 E-value=0.024 Score=53.42 Aligned_cols=25 Identities=36% Similarity=0.465 Sum_probs=22.1
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhh
Q 003802 16 RFIGICGMGGIGKTTLAKVLYNTLK 40 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~~~~ 40 (794)
.+++|.|+.|+||||+++.++....
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999988653
No 453
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.83 E-value=0.02 Score=54.99 Aligned_cols=23 Identities=48% Similarity=0.720 Sum_probs=21.2
Q ss_pred EEEEEccCCCcHHHHHHHHHHHh
Q 003802 17 FIGICGMGGIGKTTLAKVLYNTL 39 (794)
Q Consensus 17 vi~i~G~~GvGKTtLa~~v~~~~ 39 (794)
+|+|.|+.|+||||+|+.+...+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998865
No 454
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=94.82 E-value=0.049 Score=54.53 Aligned_cols=40 Identities=20% Similarity=0.320 Sum_probs=30.2
Q ss_pred CCCCeEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEE
Q 003802 11 GLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (794)
Q Consensus 11 ~~~~~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~ 50 (794)
+-+.-.++.|.|++|+|||++|.+++......=..++|++
T Consensus 32 Gip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis 71 (259)
T TIGR03878 32 GIPAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVT 71 (259)
T ss_pred CeECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEE
Confidence 3345689999999999999999998774333334677776
No 455
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=94.82 E-value=0.037 Score=56.35 Aligned_cols=35 Identities=26% Similarity=0.318 Sum_probs=26.5
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhhccccceEEEE
Q 003802 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~ 50 (794)
++|+|+|-|||||||+|..++......=..+.-|+
T Consensus 2 ~~i~~~gKGGVGKTT~a~nLA~~La~~G~rVLliD 36 (279)
T PRK13230 2 RKFCFYGKGGIGKSTTVCNIAAALAESGKKVLVVG 36 (279)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHhCCCEEEEEe
Confidence 68899999999999999999886544333345554
No 456
>PRK13768 GTPase; Provisional
Probab=94.81 E-value=0.041 Score=54.83 Aligned_cols=36 Identities=31% Similarity=0.353 Sum_probs=26.8
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEE
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~ 50 (794)
..+++|.|+||+||||++..++...+..-..++.++
T Consensus 2 ~~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~ 37 (253)
T PRK13768 2 MYIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVN 37 (253)
T ss_pred cEEEEEECCCCccHHHHHHHHHHHHHhcCCceEEEE
Confidence 368999999999999999999886654333444443
No 457
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=94.80 E-value=0.032 Score=56.80 Aligned_cols=35 Identities=31% Similarity=0.454 Sum_probs=25.4
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhhccccceEEEE
Q 003802 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~ 50 (794)
++|+|+|.|||||||++..++......=..+..++
T Consensus 1 ~~ia~~gKGGVGKTT~a~nLA~~La~~G~~VlliD 35 (275)
T TIGR01287 1 RQIAIYGKGGIGKSTTTQNIAAALAEMGKKVMIVG 35 (275)
T ss_pred CeeEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEEe
Confidence 47899999999999999999885443222344444
No 458
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.79 E-value=0.067 Score=49.02 Aligned_cols=114 Identities=17% Similarity=0.216 Sum_probs=58.2
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhhccccceEEEEechhhhcccChHHHHHHHHHHHhccccccccchhhhHHHHHHHhc
Q 003802 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWRLC 95 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~ 95 (794)
.+++|+|+.|.|||||++.++.... .....+++... .... .... +....+.-.. .....+...-.+...+.
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~~-~~~G~i~~~~~-~~~~-~~~~----~~~~~i~~~~--qlS~G~~~r~~l~~~l~ 96 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLLK-PTSGEILIDGK-DIAK-LPLE----ELRRRIGYVP--QLSGGQRQRVALARALL 96 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC-CCccEEEECCE-Eccc-CCHH----HHHhceEEEe--eCCHHHHHHHHHHHHHh
Confidence 6899999999999999999987543 23455555421 1110 0011 1111100000 01111222233445555
Q ss_pred CCeEEEEEcCCCC---hHHHH---HHhcCCCCCCCCCEEEEEeCChhhhhh
Q 003802 96 RKRVLVILDDVDQ---LEQLQ---ALVGNHDWFGFGSRIIITSRDEHVLKS 140 (794)
Q Consensus 96 ~~r~LlVlDd~~~---~~~~~---~l~~~~~~~~~gs~IlvTtR~~~v~~~ 140 (794)
.++-++++|+... ..... .+..... ..+..|+++|........
T Consensus 97 ~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~--~~~~tii~~sh~~~~~~~ 145 (157)
T cd00267 97 LNPDLLLLDEPTSGLDPASRERLLELLRELA--EEGRTVIIVTHDPELAEL 145 (157)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH--HCCCEEEEEeCCHHHHHH
Confidence 6778899998732 22222 2222222 125678888877655444
No 459
>PRK00279 adk adenylate kinase; Reviewed
Probab=94.79 E-value=0.12 Score=50.30 Aligned_cols=23 Identities=30% Similarity=0.316 Sum_probs=20.7
Q ss_pred EEEEEccCCCcHHHHHHHHHHHh
Q 003802 17 FIGICGMGGIGKTTLAKVLYNTL 39 (794)
Q Consensus 17 vi~i~G~~GvGKTtLa~~v~~~~ 39 (794)
.|.|.|++|+||||+|+.++.++
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~ 24 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKY 24 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999999865
No 460
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.79 E-value=0.046 Score=52.35 Aligned_cols=23 Identities=35% Similarity=0.273 Sum_probs=20.9
Q ss_pred eEEEEEEccCCCcHHHHHHHHHH
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYN 37 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~ 37 (794)
.+++.|.|+.|.||||+.+.++.
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~ 51 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIAL 51 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 47899999999999999998875
No 461
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=94.78 E-value=0.098 Score=51.30 Aligned_cols=26 Identities=23% Similarity=0.480 Sum_probs=22.8
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhhcc
Q 003802 17 FIGICGMGGIGKTTLAKVLYNTLKDQ 42 (794)
Q Consensus 17 vi~i~G~~GvGKTtLa~~v~~~~~~~ 42 (794)
+|+|.|.+|+||||+|+.+.+.++..
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~ 26 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFARE 26 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 58999999999999999999876543
No 462
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=94.78 E-value=0.13 Score=49.82 Aligned_cols=22 Identities=32% Similarity=0.350 Sum_probs=20.1
Q ss_pred EEEEccCCCcHHHHHHHHHHHh
Q 003802 18 IGICGMGGIGKTTLAKVLYNTL 39 (794)
Q Consensus 18 i~i~G~~GvGKTtLa~~v~~~~ 39 (794)
|.|.|++|+||||+|+.++.++
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~ 23 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKY 23 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 6799999999999999998864
No 463
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=94.75 E-value=0.12 Score=49.97 Aligned_cols=22 Identities=23% Similarity=0.230 Sum_probs=20.4
Q ss_pred EEEEEEccCCCcHHHHHHHHHH
Q 003802 16 RFIGICGMGGIGKTTLAKVLYN 37 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~ 37 (794)
++++|+|+.|.||||+.+.++-
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~~ 52 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVAL 52 (216)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 7899999999999999999864
No 464
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=94.73 E-value=0.023 Score=51.73 Aligned_cols=23 Identities=39% Similarity=0.627 Sum_probs=20.5
Q ss_pred EEEEEccCCCcHHHHHHHHHHHh
Q 003802 17 FIGICGMGGIGKTTLAKVLYNTL 39 (794)
Q Consensus 17 vi~i~G~~GvGKTtLa~~v~~~~ 39 (794)
+|.|.|++|+||||+|+.+..+.
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 47899999999999999998863
No 465
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=94.71 E-value=0.11 Score=52.38 Aligned_cols=28 Identities=32% Similarity=0.406 Sum_probs=24.0
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHHHHhh
Q 003802 13 DDVRFIGICGMGGIGKTTLAKVLYNTLK 40 (794)
Q Consensus 13 ~~~~vi~i~G~~GvGKTtLa~~v~~~~~ 40 (794)
..+.+|+|.|+.|+||||+|+.+...++
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~ 87 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLS 87 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4578999999999999999998876554
No 466
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=94.70 E-value=0.029 Score=52.40 Aligned_cols=25 Identities=44% Similarity=0.579 Sum_probs=23.0
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhh
Q 003802 16 RFIGICGMGGIGKTTLAKVLYNTLK 40 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~~~~ 40 (794)
-+|+|-||+|.||+|+|+.++.++.
T Consensus 5 ~~IAIDGPagsGKsTvak~lA~~Lg 29 (222)
T COG0283 5 IIIAIDGPAGSGKSTVAKILAEKLG 29 (222)
T ss_pred eEEEEeCCCccChHHHHHHHHHHhC
Confidence 6899999999999999999999764
No 467
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=94.69 E-value=0.038 Score=52.47 Aligned_cols=34 Identities=24% Similarity=0.184 Sum_probs=26.2
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhhccccceEEEE
Q 003802 17 FIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (794)
Q Consensus 17 vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~ 50 (794)
++.|.|++|+|||++|.+++......=..++|+.
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s 34 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLARGEPGLYVT 34 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 3689999999999999998875433335567775
No 468
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.69 E-value=0.21 Score=47.19 Aligned_cols=59 Identities=22% Similarity=0.152 Sum_probs=37.2
Q ss_pred HHHHHHHhcCCeEEEEEcCCCChHHHHHHh------cCCCCCCCCCEEEEEeCChhhhhhcCcCcEE
Q 003802 87 INLIRWRLCRKRVLVILDDVDQLEQLQALV------GNHDWFGFGSRIIITSRDEHVLKSHGVTNTY 147 (794)
Q Consensus 87 ~~~l~~~l~~~r~LlVlDd~~~~~~~~~l~------~~~~~~~~gs~IlvTtR~~~v~~~~~~~~~~ 147 (794)
...+.+.+--++-+.|||..+.--+.+++. ..+. .+|+.+++.|-.+.++....++.++
T Consensus 152 R~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr--~~~~~~liITHy~rll~~i~pD~vh 216 (251)
T COG0396 152 RNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALR--EEGRGVLIITHYQRLLDYIKPDKVH 216 (251)
T ss_pred HHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHh--cCCCeEEEEecHHHHHhhcCCCEEE
Confidence 344555555678899999887654433332 2222 3477788888888888777655443
No 469
>CHL00206 ycf2 Ycf2; Provisional
Probab=94.68 E-value=0.34 Score=59.83 Aligned_cols=25 Identities=32% Similarity=0.303 Sum_probs=22.4
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHh
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNTL 39 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~~ 39 (794)
++=|.++|++|+|||.||+++|...
T Consensus 1630 PKGILLiGPPGTGKTlLAKALA~es 1654 (2281)
T CHL00206 1630 SRGILVIGSIGTGRSYLVKYLATNS 1654 (2281)
T ss_pred CCceEEECCCCCCHHHHHHHHHHhc
Confidence 5678899999999999999999864
No 470
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.68 E-value=0.081 Score=58.51 Aligned_cols=71 Identities=23% Similarity=0.262 Sum_probs=44.0
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhhccccceEEEEechhhhcccChHHHHHHHHHHHhccccccccchhhhHHHHHHHhc
Q 003802 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWRLC 95 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~ 95 (794)
.=|.++|++|.|||-+|++|+....= -|++ +.. -+++...+.+ +.+...+.+.+.-.
T Consensus 706 SGILLYGPPGTGKTLlAKAVATEcsL-----~FlS----VKG----PELLNMYVGq----------SE~NVR~VFerAR~ 762 (953)
T KOG0736|consen 706 SGILLYGPPGTGKTLLAKAVATECSL-----NFLS----VKG----PELLNMYVGQ----------SEENVREVFERARS 762 (953)
T ss_pred ceeEEECCCCCchHHHHHHHHhhcee-----eEEe----ecC----HHHHHHHhcc----------hHHHHHHHHHHhhc
Confidence 45679999999999999999986432 2333 111 1333444433 22233333333344
Q ss_pred CCeEEEEEcCCCCh
Q 003802 96 RKRVLVILDDVDQL 109 (794)
Q Consensus 96 ~~r~LlVlDd~~~~ 109 (794)
.++|+|+||.++..
T Consensus 763 A~PCVIFFDELDSl 776 (953)
T KOG0736|consen 763 AAPCVIFFDELDSL 776 (953)
T ss_pred cCCeEEEecccccc
Confidence 68999999998654
No 471
>PLN02318 phosphoribulokinase/uridine kinase
Probab=94.68 E-value=0.039 Score=60.09 Aligned_cols=35 Identities=26% Similarity=0.465 Sum_probs=28.9
Q ss_pred hHhHhcCCCCeEEEEEEccCCCcHHHHHHHHHHHh
Q 003802 5 NGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTL 39 (794)
Q Consensus 5 ~~~l~~~~~~~~vi~i~G~~GvGKTtLa~~v~~~~ 39 (794)
.+++....++..+|+|.|+.|+||||+|+.++..+
T Consensus 55 ~qlL~~~~~~riIIGIaGpSGSGKTTLAk~LaglL 89 (656)
T PLN02318 55 CQLLAQKNDGIILVGVAGPSGAGKTVFTEKVLNFM 89 (656)
T ss_pred HHHHHhcCCCeEEEEEECCCCCcHHHHHHHHHhhC
Confidence 44555555678999999999999999999998764
No 472
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=94.67 E-value=0.04 Score=53.49 Aligned_cols=26 Identities=46% Similarity=0.694 Sum_probs=22.4
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhhc
Q 003802 16 RFIGICGMGGIGKTTLAKVLYNTLKD 41 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~~~~~ 41 (794)
|+|+|.|.||+||||++..++..+.+
T Consensus 1 ~~iav~gKGGvGKTt~~~nLA~~la~ 26 (212)
T cd02117 1 RQIAIYGKGGIGKSTTSQNLSAALAE 26 (212)
T ss_pred CEEEEECCCcCcHHHHHHHHHHHHHH
Confidence 47899999999999999999886544
No 473
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=94.65 E-value=0.29 Score=46.64 Aligned_cols=22 Identities=36% Similarity=0.338 Sum_probs=20.4
Q ss_pred EEEEccCCCcHHHHHHHHHHHh
Q 003802 18 IGICGMGGIGKTTLAKVLYNTL 39 (794)
Q Consensus 18 i~i~G~~GvGKTtLa~~v~~~~ 39 (794)
|.|.|++|+||||+|+.+++++
T Consensus 2 I~i~G~pGsGKst~a~~La~~~ 23 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKY 23 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999999874
No 474
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=94.64 E-value=0.059 Score=53.83 Aligned_cols=34 Identities=26% Similarity=0.298 Sum_probs=28.7
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHHHHhhccccce
Q 003802 13 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEAS 46 (794)
Q Consensus 13 ~~~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~ 46 (794)
.+..+|.|.|..|+|||||+..+....+......
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~ 135 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCA 135 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhccCCCEE
Confidence 4578999999999999999999999877665333
No 475
>PRK14737 gmk guanylate kinase; Provisional
Probab=94.64 E-value=0.029 Score=52.80 Aligned_cols=26 Identities=23% Similarity=0.372 Sum_probs=23.2
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHHHh
Q 003802 14 DVRFIGICGMGGIGKTTLAKVLYNTL 39 (794)
Q Consensus 14 ~~~vi~i~G~~GvGKTtLa~~v~~~~ 39 (794)
..++|+|+|++|+|||||++++..+.
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 45799999999999999999998864
No 476
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.63 E-value=0.18 Score=48.90 Aligned_cols=22 Identities=41% Similarity=0.499 Sum_probs=20.5
Q ss_pred EEEEEEccCCCcHHHHHHHHHH
Q 003802 16 RFIGICGMGGIGKTTLAKVLYN 37 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~ 37 (794)
.+++|.|+.|.|||||++.++-
T Consensus 38 e~~~i~G~nGsGKSTLl~~i~G 59 (214)
T PRK13543 38 EALLVQGDNGAGKTTLLRVLAG 59 (214)
T ss_pred CEEEEEcCCCCCHHHHHHHHhC
Confidence 5899999999999999999986
No 477
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=94.63 E-value=0.11 Score=48.76 Aligned_cols=110 Identities=20% Similarity=0.116 Sum_probs=57.3
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhhc---cccc-eE-EEEechhhhcccChHHHHHHHHHHHhccccccccchhhhHHHH
Q 003802 16 RFIGICGMGGIGKTTLAKVLYNTLKD---QFEA-SS-FLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLI 90 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~~~~~---~f~~-~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l 90 (794)
.-..|.|++|+||||+.+.+++-+.. .|.. .+ -++...+... ....--+.+....+...+ ...-.+.....+
T Consensus 138 lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag-~~~gvpq~~~g~R~dVld--~cpk~~gmmmaI 214 (308)
T COG3854 138 LNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAG-CLNGVPQHGRGRRMDVLD--PCPKAEGMMMAI 214 (308)
T ss_pred eeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhc-cccCCchhhhhhhhhhcc--cchHHHHHHHHH
Confidence 34678999999999999999985433 3422 22 2322111111 000000111111111111 111112222333
Q ss_pred HHHhcCCeEEEEEcCCCChHHHHHHhcCCCCCCCCCEEEEEeCC
Q 003802 91 RWRLCRKRVLVILDDVDQLEQLQALVGNHDWFGFGSRIIITSRD 134 (794)
Q Consensus 91 ~~~l~~~r~LlVlDd~~~~~~~~~l~~~~~~~~~gs~IlvTtR~ 134 (794)
+. --+=++|+|.+-..++-.++...+ ..|.+++.|..-
T Consensus 215 rs---m~PEViIvDEIGt~~d~~A~~ta~---~~GVkli~TaHG 252 (308)
T COG3854 215 RS---MSPEVIIVDEIGTEEDALAILTAL---HAGVKLITTAHG 252 (308)
T ss_pred Hh---cCCcEEEEeccccHHHHHHHHHHH---hcCcEEEEeecc
Confidence 32 346689999998888877776664 468888777653
No 478
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=94.63 E-value=0.083 Score=50.70 Aligned_cols=87 Identities=26% Similarity=0.303 Sum_probs=48.0
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhhccccceEEEEechhhhcccChHHHHHHHHHHHhccccc---cccch---------
Q 003802 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDL---IIWDV--------- 83 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~~~~~--------- 83 (794)
.-++|.|.+|+|||+|+.++++.... +.++++.+. .+...+.+..+++...-..+... ...+.
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~~~--d~~V~~~iG---er~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~ 90 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQDA--DVVVYALIG---ERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAP 90 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHCTT--TEEEEEEES---ECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHH
T ss_pred CEEEEEcCcccccchhhHHHHhcccc--cceeeeecc---ccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhh
Confidence 46789999999999999999997643 333555421 12234444445443321111100 00110
Q ss_pred ---hhhHHHHHHHhcCCeEEEEEcCCCCh
Q 003802 84 ---HKGINLIRWRLCRKRVLVILDDVDQL 109 (794)
Q Consensus 84 ---~~~~~~l~~~l~~~r~LlVlDd~~~~ 109 (794)
-...+.+++ ++++.|+|+||+...
T Consensus 91 ~~a~t~AEyfrd--~G~dVlli~Dsltr~ 117 (215)
T PF00006_consen 91 YTALTIAEYFRD--QGKDVLLIIDSLTRW 117 (215)
T ss_dssp HHHHHHHHHHHH--TTSEEEEEEETHHHH
T ss_pred ccchhhhHHHhh--cCCceeehhhhhHHH
Confidence 111222333 589999999998443
No 479
>PRK13975 thymidylate kinase; Provisional
Probab=94.61 E-value=0.033 Score=53.37 Aligned_cols=26 Identities=46% Similarity=0.645 Sum_probs=23.7
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhhc
Q 003802 16 RFIGICGMGGIGKTTLAKVLYNTLKD 41 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~~~~~ 41 (794)
.+|+|.|+.|+||||+|+.+++++..
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNA 28 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 58999999999999999999998764
No 480
>PRK13236 nitrogenase reductase; Reviewed
Probab=94.61 E-value=0.052 Score=55.62 Aligned_cols=30 Identities=30% Similarity=0.595 Sum_probs=25.6
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHHHHhhcc
Q 003802 13 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQ 42 (794)
Q Consensus 13 ~~~~vi~i~G~~GvGKTtLa~~v~~~~~~~ 42 (794)
.+.+||.+.|-|||||||+|.-++..+.+.
T Consensus 4 ~~~~~~~~~GKGGVGKTt~a~NLA~~La~~ 33 (296)
T PRK13236 4 ENIRQIAFYGKGGIGKSTTSQNTLAAMAEM 33 (296)
T ss_pred cCceEEEEECCCcCCHHHHHHHHHHHHHHC
Confidence 467999999999999999999988865444
No 481
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=94.55 E-value=0.12 Score=60.04 Aligned_cols=27 Identities=22% Similarity=0.351 Sum_probs=23.3
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhhcc
Q 003802 16 RFIGICGMGGIGKTTLAKVLYNTLKDQ 42 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~~~~~~ 42 (794)
+++.|.|.+|+||||+++.+.+.++..
T Consensus 369 ~~~il~G~aGTGKTtll~~i~~~~~~~ 395 (744)
T TIGR02768 369 DIAVVVGRAGTGKSTMLKAAREAWEAA 395 (744)
T ss_pred CEEEEEecCCCCHHHHHHHHHHHHHhC
Confidence 588999999999999999998866543
No 482
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=94.55 E-value=0.24 Score=54.54 Aligned_cols=127 Identities=24% Similarity=0.274 Sum_probs=0.0
Q ss_pred EEEEccCCCcHHHHHHHHHHHhhccccceEEE--------------------Eechhhhccc-Ch-HHHHHHHHHHHhcc
Q 003802 18 IGICGMGGIGKTTLAKVLYNTLKDQFEASSFL--------------------ANVREVSVTR-GL-VPLQEQLLSEVLME 75 (794)
Q Consensus 18 i~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~--------------------~~~~~~~~~~-~~-~~~~~~i~~~~~~~ 75 (794)
|+|+|+.|+|||||.+.+....... ...+.+ .....+.... .. ..-.+..+..++-.
T Consensus 351 iaiiG~NG~GKSTLlk~l~g~~~~~-~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~ 429 (530)
T COG0488 351 IAIVGPNGAGKSTLLKLLAGELGPL-SGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFT 429 (530)
T ss_pred EEEECCCCCCHHHHHHHHhhhcccC-CceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcCCC
Q ss_pred cccc------ccchhhhHHHHHHHhcCCeEEEEEc------CCCChHHHHHHhcCCCCCCCCCEEEEEeCChhhhhhcCc
Q 003802 76 RDLI------IWDVHKGINLIRWRLCRKRVLVILD------DVDQLEQLQALVGNHDWFGFGSRIIITSRDEHVLKSHGV 143 (794)
Q Consensus 76 ~~~~------~~~~~~~~~~l~~~l~~~r~LlVlD------d~~~~~~~~~l~~~~~~~~~gs~IlvTtR~~~v~~~~~~ 143 (794)
.+.. ...-+...-.+...+-.++=+|||| |++..+.+++.+..++ |+ ||+.|-++.......
T Consensus 430 ~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f~----Gt-vl~VSHDr~Fl~~va- 503 (530)
T COG0488 430 GEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDFE----GT-VLLVSHDRYFLDRVA- 503 (530)
T ss_pred hHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhCC----Ce-EEEEeCCHHHHHhhc-
Q ss_pred CcEEEcCC
Q 003802 144 TNTYKVRG 151 (794)
Q Consensus 144 ~~~~~l~~ 151 (794)
...+.+++
T Consensus 504 ~~i~~~~~ 511 (530)
T COG0488 504 TRIWLVED 511 (530)
T ss_pred ceEEEEcC
No 483
>PRK13949 shikimate kinase; Provisional
Probab=94.55 E-value=0.031 Score=51.76 Aligned_cols=25 Identities=44% Similarity=0.454 Sum_probs=22.2
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhh
Q 003802 16 RFIGICGMGGIGKTTLAKVLYNTLK 40 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~~~~ 40 (794)
+-|.|+|+.|+||||+++.+++...
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3588999999999999999999764
No 484
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=94.54 E-value=0.059 Score=46.15 Aligned_cols=33 Identities=36% Similarity=0.529 Sum_probs=25.7
Q ss_pred EEEEccCCCcHHHHHHHHHHHhhccccceEEEE
Q 003802 18 IGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (794)
Q Consensus 18 i~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~ 50 (794)
|.+.|.||+|||+++..++..+.++-..+..++
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id 34 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAEKGKPVLAID 34 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 789999999999999999987665433444444
No 485
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=94.53 E-value=0.14 Score=58.63 Aligned_cols=22 Identities=41% Similarity=0.619 Sum_probs=20.3
Q ss_pred EEEEEEccCCCcHHHHHHHHHH
Q 003802 16 RFIGICGMGGIGKTTLAKVLYN 37 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~ 37 (794)
..|+|+|..|+|||||++.+..
T Consensus 500 e~vaIvG~SGsGKSTL~KLL~g 521 (709)
T COG2274 500 EKVAIVGRSGSGKSTLLKLLLG 521 (709)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5799999999999999999965
No 486
>PLN02348 phosphoribulokinase
Probab=94.53 E-value=0.19 Score=52.28 Aligned_cols=30 Identities=27% Similarity=0.443 Sum_probs=26.3
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHHHHhhcc
Q 003802 13 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQ 42 (794)
Q Consensus 13 ~~~~vi~i~G~~GvGKTtLa~~v~~~~~~~ 42 (794)
++..+|+|.|.+|+||||+|+.+...+...
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~~ 76 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTSVFGGA 76 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence 457899999999999999999999977543
No 487
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=94.51 E-value=0.07 Score=55.47 Aligned_cols=36 Identities=19% Similarity=0.062 Sum_probs=25.3
Q ss_pred hhhHhHhcCCCCeEEEEEEccCCCcHHHHHHHHHHH
Q 003802 3 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNT 38 (794)
Q Consensus 3 ~l~~~l~~~~~~~~vi~i~G~~GvGKTtLa~~v~~~ 38 (794)
++.+.+........-|.|+|..|+||+++|+.+...
T Consensus 17 ~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~ 52 (326)
T PRK11608 17 EVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYL 52 (326)
T ss_pred HHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHh
Confidence 444444432233356779999999999999998763
No 488
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=94.48 E-value=0.22 Score=47.81 Aligned_cols=21 Identities=38% Similarity=0.507 Sum_probs=19.5
Q ss_pred EEEEEEccCCCcHHHHHHHHH
Q 003802 16 RFIGICGMGGIGKTTLAKVLY 36 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~ 36 (794)
.+++|+|+.|.|||||...++
T Consensus 23 g~~~i~G~NGsGKTTLl~ai~ 43 (204)
T cd03240 23 PLTLIVGQNGAGKTTIIEALK 43 (204)
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 499999999999999999985
No 489
>PRK13948 shikimate kinase; Provisional
Probab=94.48 E-value=0.035 Score=51.84 Aligned_cols=27 Identities=26% Similarity=0.474 Sum_probs=23.8
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHHHhh
Q 003802 14 DVRFIGICGMGGIGKTTLAKVLYNTLK 40 (794)
Q Consensus 14 ~~~vi~i~G~~GvGKTtLa~~v~~~~~ 40 (794)
..+.|.++|+.|+||||+++.++++..
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg 35 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALM 35 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcC
Confidence 456888999999999999999999764
No 490
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=94.47 E-value=0.032 Score=52.72 Aligned_cols=31 Identities=39% Similarity=0.529 Sum_probs=25.4
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhhccccc
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEA 45 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~ 45 (794)
.++|+|+|+.|+||+|++..+.......|..
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~ 32 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEIPDAFER 32 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcCCcceEe
Confidence 3689999999999999999998875444443
No 491
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=94.46 E-value=0.083 Score=48.03 Aligned_cols=20 Identities=45% Similarity=0.426 Sum_probs=18.7
Q ss_pred EEccCCCcHHHHHHHHHHHh
Q 003802 20 ICGMGGIGKTTLAKVLYNTL 39 (794)
Q Consensus 20 i~G~~GvGKTtLa~~v~~~~ 39 (794)
|.|++|+||||+|+.++.++
T Consensus 1 i~G~PgsGK~t~~~~la~~~ 20 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRY 20 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhc
Confidence 68999999999999999975
No 492
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=94.46 E-value=0.037 Score=60.00 Aligned_cols=40 Identities=23% Similarity=0.345 Sum_probs=29.9
Q ss_pred hhhhHhH----hcCCCCeEEEEEEccCCCcHHHHHHHHHHHhhc
Q 003802 2 EKMNGYL----EAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKD 41 (794)
Q Consensus 2 ~~l~~~l----~~~~~~~~vi~i~G~~GvGKTtLa~~v~~~~~~ 41 (794)
++|.+.+ ......-++++++||.|+|||+||+.+++...+
T Consensus 86 eriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~ 129 (644)
T PRK15455 86 EQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMER 129 (644)
T ss_pred HHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHh
Confidence 4455555 222445689999999999999999999986543
No 493
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=94.45 E-value=0.028 Score=53.03 Aligned_cols=24 Identities=42% Similarity=0.569 Sum_probs=21.7
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHh
Q 003802 16 RFIGICGMGGIGKTTLAKVLYNTL 39 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~~~ 39 (794)
++|+|+|+.|+||||+|+.++...
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 589999999999999999999853
No 494
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=94.44 E-value=0.21 Score=47.62 Aligned_cols=25 Identities=32% Similarity=0.398 Sum_probs=21.9
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHh
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNTL 39 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~~ 39 (794)
-.+++|.|+.|.|||||.+.++...
T Consensus 35 Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 35 GELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3689999999999999999997643
No 495
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=94.44 E-value=0.054 Score=54.24 Aligned_cols=34 Identities=26% Similarity=0.361 Sum_probs=29.2
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhhccccceEEEE
Q 003802 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~ 50 (794)
++|+|+|.+|+|||||+..+...++++. .+..+.
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~~L~~~G-~V~~IK 35 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVDRLSGRG-RVGTVK 35 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhCC-CEEEEE
Confidence 6899999999999999999999887776 566655
No 496
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.43 E-value=0.21 Score=53.04 Aligned_cols=25 Identities=28% Similarity=0.325 Sum_probs=22.3
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHHH
Q 003802 14 DVRFIGICGMGGIGKTTLAKVLYNT 38 (794)
Q Consensus 14 ~~~vi~i~G~~GvGKTtLa~~v~~~ 38 (794)
...+|+++|+.|+||||++.+++.+
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~ 214 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAAR 214 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3579999999999999999999874
No 497
>PRK05973 replicative DNA helicase; Provisional
Probab=94.43 E-value=0.074 Score=51.78 Aligned_cols=37 Identities=19% Similarity=0.117 Sum_probs=28.0
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEE
Q 003802 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (794)
Q Consensus 14 ~~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~ 50 (794)
.-.++.|.|.+|+|||++|.+++.....+-..++|++
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfS 99 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFT 99 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 3468999999999999999998775433334566665
No 498
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=94.42 E-value=0.084 Score=54.30 Aligned_cols=31 Identities=35% Similarity=0.508 Sum_probs=26.5
Q ss_pred CCCeEEEEEEccCCCcHHHHHHHHHHHhhcc
Q 003802 12 LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ 42 (794)
Q Consensus 12 ~~~~~vi~i~G~~GvGKTtLa~~v~~~~~~~ 42 (794)
.+...+|+|.|.+|+||||++..+...+++.
T Consensus 53 ~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~ 83 (332)
T PRK09435 53 TGNALRIGITGVPGVGKSTFIEALGMHLIEQ 83 (332)
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 4567899999999999999999998876543
No 499
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=94.42 E-value=0.035 Score=50.72 Aligned_cols=22 Identities=45% Similarity=0.673 Sum_probs=20.5
Q ss_pred EEEEccCCCcHHHHHHHHHHHh
Q 003802 18 IGICGMGGIGKTTLAKVLYNTL 39 (794)
Q Consensus 18 i~i~G~~GvGKTtLa~~v~~~~ 39 (794)
|.|+|++|+||||+|+.++...
T Consensus 2 i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 7899999999999999999875
No 500
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=94.41 E-value=0.09 Score=50.38 Aligned_cols=98 Identities=18% Similarity=0.171 Sum_probs=45.6
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEEechhhhcccChHHHHHHHHHHHhcccccc--ccchhhhHHHH
Q 003802 13 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLI--IWDVHKGINLI 90 (794)
Q Consensus 13 ~~~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~l 90 (794)
..+.++.+.|.+|.||||++..+..... ....+.++ ........ ....++... ....... ..+.......+
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~~--~~~~v~i~-~D~~r~~~---p~~~~~~~~-~~~~~~~~~~~~a~~~~~~~ 85 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLARQLLEEFG--GGGIVVID-ADEFRQFH---PDYDELLKA-DPDEASELTQKEASRLAEKL 85 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHHHHHHHT---TT-SEEE--GGGGGGGS---TTHHHHHHH-HCCCTHHHHHHHHHHHHHHH
T ss_pred cCCEEEEEeCCCCCCHHHHHHHhhhhcc--CCCeEEEe-hHHHHHhc---cchhhhhhh-hhhhhHHHHHHHHHHHHHHH
Confidence 5688999999999999999999987653 34455554 21111111 111222221 1111100 11223344455
Q ss_pred HHHhcCCeEEEEEcCCCC-hHHHHHHhc
Q 003802 91 RWRLCRKRVLVILDDVDQ-LEQLQALVG 117 (794)
Q Consensus 91 ~~~l~~~r~LlVlDd~~~-~~~~~~l~~ 117 (794)
.+..-.+++=+|+|..-. .+....+..
T Consensus 86 ~~~a~~~~~nii~E~tl~~~~~~~~~~~ 113 (199)
T PF06414_consen 86 IEYAIENRYNIIFEGTLSNPSKLRKLIR 113 (199)
T ss_dssp HHHHHHCT--EEEE--TTSSHHHHHHHH
T ss_pred HHHHHHcCCCEEEecCCCChhHHHHHHH
Confidence 555556777888897643 333333433
Done!