Query 003802
Match_columns 794
No_of_seqs 700 out of 4946
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 04:32:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003802.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003802hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 5.4E-40 1.8E-44 366.7 19.6 291 2-306 138-472 (549)
2 3rgz_A Protein brassinosteroid 100.0 5.1E-35 1.7E-39 342.0 15.1 415 333-755 223-713 (768)
3 3rgz_A Protein brassinosteroid 100.0 4.7E-34 1.6E-38 333.9 16.9 367 332-709 268-720 (768)
4 1vt4_I APAF-1 related killer D 100.0 2.5E-33 8.4E-38 314.4 16.9 269 2-298 138-436 (1221)
5 3t6q_A CD180 antigen; protein- 100.0 1.2E-32 4E-37 315.2 19.3 373 333-706 33-489 (606)
6 3t6q_A CD180 antigen; protein- 100.0 4.1E-32 1.4E-36 310.6 23.1 317 331-649 79-462 (606)
7 4eco_A Uncharacterized protein 100.0 5.5E-33 1.9E-37 317.1 13.9 312 333-649 81-501 (636)
8 3sfz_A APAF-1, apoptotic pepti 100.0 2.1E-32 7.3E-37 340.4 20.2 291 2-305 134-452 (1249)
9 4ecn_A Leucine-rich repeat pro 100.0 8.9E-32 3.1E-36 311.4 20.4 312 332-648 322-740 (876)
10 3vq2_A TLR4, TOLL-like recepto 100.0 2.3E-32 7.9E-37 312.7 15.1 139 333-471 32-178 (606)
11 4eco_A Uncharacterized protein 100.0 1.2E-31 3.9E-36 306.2 18.1 342 332-706 205-600 (636)
12 4ecn_A Leucine-rich repeat pro 100.0 2E-30 6.8E-35 300.1 26.1 343 330-706 445-840 (876)
13 3vq2_A TLR4, TOLL-like recepto 100.0 5.6E-31 1.9E-35 301.2 20.5 361 330-706 53-534 (606)
14 2z7x_B TOLL-like receptor 1, v 100.0 1.2E-31 4.3E-36 300.5 11.6 367 333-707 21-482 (520)
15 2z63_A TOLL-like receptor 4, v 100.0 1.9E-31 6.6E-36 303.0 13.2 182 517-708 346-533 (570)
16 3j0a_A TOLL-like receptor 5; m 100.0 2.2E-30 7.7E-35 306.0 22.2 295 332-628 23-377 (844)
17 2z81_A CD282 antigen, TOLL-lik 100.0 4E-31 1.4E-35 298.8 14.0 368 333-706 26-486 (549)
18 1ziw_A TOLL-like receptor 3; i 100.0 1.1E-29 3.7E-34 294.6 25.6 393 332-734 120-625 (680)
19 1ziw_A TOLL-like receptor 3; i 100.0 4.9E-30 1.7E-34 297.5 22.3 220 333-552 25-283 (680)
20 1z6t_A APAF-1, apoptotic prote 100.0 3.3E-30 1.1E-34 292.9 20.3 286 2-301 134-448 (591)
21 3o6n_A APL1; leucine-rich repe 100.0 4.2E-30 1.4E-34 276.5 19.6 318 333-718 45-364 (390)
22 2id5_A Lingo-1, leucine rich r 100.0 8.4E-30 2.9E-34 282.2 21.2 321 362-715 16-342 (477)
23 4fmz_A Internalin; leucine ric 100.0 2.1E-29 7.1E-34 266.8 23.1 302 334-706 45-346 (347)
24 3bz5_A Internalin-J, INLJ; leu 100.0 1.9E-29 6.5E-34 275.1 23.1 307 353-707 38-353 (457)
25 3v47_A TOLL-like receptor 5B a 100.0 2.9E-30 9.8E-35 284.4 16.2 347 333-709 30-411 (455)
26 3oja_B Anopheles plasmodium-re 100.0 8.9E-30 3E-34 289.1 19.2 317 334-718 52-370 (597)
27 4fmz_A Internalin; leucine ric 100.0 4E-28 1.4E-32 256.9 26.9 281 329-678 62-343 (347)
28 1o6v_A Internalin A; bacterial 100.0 2.2E-28 7.5E-33 269.4 25.5 342 333-706 46-388 (466)
29 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 7.2E-29 2.5E-33 280.3 21.1 363 333-713 52-517 (562)
30 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2.1E-28 7.2E-33 276.5 24.9 314 329-678 72-507 (562)
31 3j0a_A TOLL-like receptor 5; m 100.0 4E-29 1.4E-33 295.3 19.8 316 330-649 45-439 (844)
32 2id5_A Lingo-1, leucine rich r 100.0 4.2E-28 1.4E-32 268.6 24.5 293 333-649 32-333 (477)
33 3v47_A TOLL-like receptor 5B a 100.0 2.6E-29 9E-34 276.8 13.9 345 357-731 30-408 (455)
34 2z81_A CD282 antigen, TOLL-lik 100.0 4.6E-29 1.6E-33 281.9 15.9 358 330-710 47-514 (549)
35 1o6v_A Internalin A; bacterial 100.0 1.6E-27 5.4E-32 262.5 22.1 342 354-728 43-385 (466)
36 2z63_A TOLL-like receptor 4, v 100.0 9.7E-28 3.3E-32 272.5 20.1 178 492-678 345-528 (570)
37 3bz5_A Internalin-J, INLJ; leu 100.0 7.5E-28 2.6E-32 262.5 18.0 334 333-711 42-392 (457)
38 2z7x_B TOLL-like receptor 1, v 100.0 3.4E-27 1.2E-31 264.4 23.3 332 330-678 42-478 (520)
39 4g8a_A TOLL-like receptor 4; l 100.0 9.8E-28 3.3E-32 276.5 18.6 375 333-717 52-595 (635)
40 1xku_A Decorin; proteoglycan, 99.9 1E-26 3.5E-31 244.0 23.7 294 379-704 32-330 (330)
41 1jl5_A Outer protein YOPM; leu 99.9 2.3E-27 8E-32 258.4 19.5 335 332-706 10-370 (454)
42 1jl5_A Outer protein YOPM; leu 99.9 2.1E-26 7.2E-31 250.9 26.4 325 333-707 71-410 (454)
43 2ft3_A Biglycan; proteoglycan, 99.9 7.2E-27 2.5E-31 245.2 20.8 293 379-704 34-331 (332)
44 1ogq_A PGIP-2, polygalacturona 99.9 1.2E-27 4E-32 248.2 11.1 228 401-654 51-286 (313)
45 1ogq_A PGIP-2, polygalacturona 99.9 6.4E-27 2.2E-31 242.7 15.6 247 378-651 50-306 (313)
46 4fcg_A Uncharacterized protein 99.9 5.7E-26 2E-30 236.9 19.7 222 400-647 81-312 (328)
47 3o6n_A APL1; leucine-rich repe 99.9 2.5E-25 8.5E-30 239.3 24.8 261 332-648 68-330 (390)
48 4g8a_A TOLL-like receptor 4; l 99.9 1.7E-26 5.7E-31 266.2 14.8 381 339-734 37-583 (635)
49 1xku_A Decorin; proteoglycan, 99.9 8.5E-25 2.9E-29 229.3 26.2 285 358-678 32-329 (330)
50 3oja_B Anopheles plasmodium-re 99.9 3.4E-25 1.2E-29 251.4 24.9 277 332-648 74-357 (597)
51 2ft3_A Biglycan; proteoglycan, 99.9 2.7E-25 9.2E-30 233.2 22.3 284 358-678 34-330 (332)
52 4fcg_A Uncharacterized protein 99.9 4.2E-25 1.4E-29 230.4 18.7 223 421-678 79-311 (328)
53 2z80_A TOLL-like receptor 2, v 99.9 5.1E-25 1.7E-29 233.3 14.1 271 358-648 32-313 (353)
54 3zyj_A Leucine-rich repeat-con 99.9 1.2E-23 4.2E-28 229.6 23.4 244 380-649 45-292 (440)
55 2z66_A Variable lymphocyte rec 99.9 5E-24 1.7E-28 220.9 18.8 241 382-648 11-260 (306)
56 3zyi_A Leucine-rich repeat-con 99.9 1.4E-23 4.7E-28 230.1 23.2 243 381-649 57-303 (452)
57 2z66_A Variable lymphocyte rec 99.9 2.2E-24 7.4E-29 223.7 15.6 242 361-626 11-261 (306)
58 1z7x_W Ribonuclease inhibitor; 99.9 4.4E-27 1.5E-31 259.5 -5.3 361 333-718 3-423 (461)
59 3zyi_A Leucine-rich repeat-con 99.9 3.3E-23 1.1E-27 227.0 22.7 242 401-678 55-300 (452)
60 3g06_A SSPH2 (leucine-rich rep 99.9 7.7E-23 2.6E-27 229.2 26.0 261 334-653 41-301 (622)
61 3zyj_A Leucine-rich repeat-con 99.9 3.6E-23 1.2E-27 225.9 22.4 242 401-678 44-289 (440)
62 1ozn_A Reticulon 4 receptor; N 99.9 6.1E-23 2.1E-27 210.3 22.1 221 403-649 14-238 (285)
63 1ozn_A Reticulon 4 receptor; N 99.9 2.2E-23 7.5E-28 213.6 18.8 221 381-626 14-238 (285)
64 2z80_A TOLL-like receptor 2, v 99.9 6.2E-24 2.1E-28 224.9 13.6 263 382-678 35-311 (353)
65 3g06_A SSPH2 (leucine-rich rep 99.9 2.7E-22 9.2E-27 224.8 27.3 173 357-552 40-212 (622)
66 3o53_A Protein LRIM1, AGAP0063 99.9 1.2E-24 4.2E-29 226.2 6.8 212 402-649 36-250 (317)
67 3o53_A Protein LRIM1, AGAP0063 99.9 7.7E-24 2.6E-28 220.2 8.4 259 401-704 11-273 (317)
68 1wwl_A Monocyte differentiatio 99.9 4.8E-24 1.6E-28 221.2 6.0 241 379-649 44-309 (312)
69 3oja_A Leucine-rich immune mol 99.9 4.9E-23 1.7E-27 226.6 11.4 215 399-649 33-250 (487)
70 1z7x_W Ribonuclease inhibitor; 99.9 1.1E-24 3.9E-29 240.2 -3.6 360 333-719 28-456 (461)
71 3oja_A Leucine-rich immune mol 99.9 2.2E-22 7.4E-27 221.5 11.8 234 357-644 34-270 (487)
72 2z62_A TOLL-like receptor 4, v 99.9 2.2E-21 7.5E-26 197.6 18.3 219 384-649 13-237 (276)
73 1wwl_A Monocyte differentiatio 99.9 6.4E-23 2.2E-27 212.7 6.1 220 401-647 44-285 (312)
74 2o6q_A Variable lymphocyte rec 99.9 9.1E-21 3.1E-25 192.1 20.8 199 401-648 17-217 (270)
75 2z62_A TOLL-like receptor 4, v 99.9 1E-20 3.5E-25 192.7 19.6 191 362-552 12-211 (276)
76 1p9a_G Platelet glycoprotein I 99.9 1.4E-20 4.6E-25 192.3 19.2 200 420-648 7-207 (290)
77 2o6q_A Variable lymphocyte rec 99.8 5.7E-20 2E-24 186.2 21.8 173 379-552 17-192 (270)
78 1p9a_G Platelet glycoprotein I 99.8 3.4E-20 1.2E-24 189.4 18.0 200 353-553 6-207 (290)
79 2xwt_C Thyrotropin receptor; s 99.8 1.9E-20 6.3E-25 186.2 15.3 205 390-647 23-237 (239)
80 3rfs_A Internalin B, repeat mo 99.8 5.5E-21 1.9E-25 193.9 11.0 201 421-654 39-240 (272)
81 3rfs_A Internalin B, repeat mo 99.8 2.3E-20 7.8E-25 189.3 14.4 202 401-635 42-245 (272)
82 4glp_A Monocyte differentiatio 99.8 4.3E-20 1.5E-24 191.3 14.3 225 398-649 62-307 (310)
83 3ogk_B Coronatine-insensitive 99.8 1.4E-22 4.9E-27 231.0 -6.3 365 355-729 110-524 (592)
84 2ast_B S-phase kinase-associat 99.8 5.4E-21 1.8E-25 201.1 5.8 223 401-646 48-282 (336)
85 1h6u_A Internalin H; cell adhe 99.8 1.3E-19 4.5E-24 187.0 16.0 192 421-649 39-230 (308)
86 1h6u_A Internalin H; cell adhe 99.8 2E-19 6.9E-24 185.6 16.4 195 399-630 40-234 (308)
87 3ogk_B Coronatine-insensitive 99.8 3.6E-22 1.2E-26 227.6 -6.3 342 334-709 139-529 (592)
88 4ay9_X Follicle-stimulating ho 99.8 9.3E-19 3.2E-23 184.4 18.5 238 381-646 12-256 (350)
89 2ast_B S-phase kinase-associat 99.8 3.7E-20 1.3E-24 194.7 7.4 228 402-654 72-311 (336)
90 2ca6_A RAN GTPase-activating p 99.8 1.8E-20 6E-25 201.0 4.1 231 399-650 31-317 (386)
91 3m19_A Variable lymphocyte rec 99.8 2.7E-18 9.1E-23 171.8 18.4 107 402-534 16-123 (251)
92 2xwt_C Thyrotropin receptor; s 99.8 1.2E-18 4.1E-23 173.1 14.3 194 447-667 32-236 (239)
93 2ca6_A RAN GTPase-activating p 99.8 9.3E-21 3.2E-25 203.1 -1.2 229 401-648 10-286 (386)
94 4ay9_X Follicle-stimulating ho 99.8 2.7E-18 9.2E-23 180.9 17.2 224 403-654 12-241 (350)
95 3m19_A Variable lymphocyte rec 99.8 4.8E-18 1.6E-22 170.0 18.0 173 379-552 15-190 (251)
96 3goz_A Leucine-rich repeat-con 99.8 9.5E-20 3.2E-24 193.1 3.4 229 400-649 22-297 (362)
97 4glp_A Monocyte differentiatio 99.8 1E-18 3.4E-23 181.0 10.9 203 424-649 65-285 (310)
98 2p1m_B Transport inhibitor res 99.8 4.2E-21 1.4E-25 219.0 -8.1 287 353-645 101-441 (594)
99 3goz_A Leucine-rich repeat-con 99.8 4.2E-20 1.4E-24 195.8 -0.1 223 404-647 2-264 (362)
100 3cvr_A Invasion plasmid antige 99.7 2.1E-17 7.1E-22 182.8 17.9 132 401-552 60-191 (571)
101 2p1m_B Transport inhibitor res 99.7 1.6E-20 5.5E-25 214.1 -7.4 376 333-720 105-533 (594)
102 2o6s_A Variable lymphocyte rec 99.7 2.5E-17 8.5E-22 159.6 13.6 147 404-552 11-159 (208)
103 3cvr_A Invasion plasmid antige 99.7 4.6E-17 1.6E-21 180.1 16.8 175 358-552 60-241 (571)
104 4ezg_A Putative uncharacterize 99.7 2.8E-17 9.7E-22 157.5 12.1 150 399-552 43-192 (197)
105 1h6t_A Internalin B; cell adhe 99.7 6.8E-17 2.3E-21 165.0 13.0 173 421-629 44-216 (291)
106 1dce_A Protein (RAB geranylger 99.7 6.5E-19 2.2E-23 196.2 -3.4 207 398-643 347-567 (567)
107 1m9s_A Internalin B; cell inva 99.7 2.7E-17 9.2E-22 184.2 8.5 17 609-625 193-209 (605)
108 1h6t_A Internalin B; cell adhe 99.7 1.7E-16 5.7E-21 162.2 13.6 169 354-552 43-211 (291)
109 2v9t_B SLIT homolog 2 protein 99.7 3.5E-16 1.2E-20 152.5 14.5 148 403-552 14-163 (220)
110 2v70_A SLIT-2, SLIT homolog 2 99.7 3.6E-16 1.2E-20 152.4 13.8 147 404-552 15-164 (220)
111 2v70_A SLIT-2, SLIT homolog 2 99.7 7E-16 2.4E-20 150.4 14.8 150 381-531 14-166 (220)
112 2v9t_B SLIT homolog 2 protein 99.7 7.4E-16 2.5E-20 150.2 14.4 150 381-531 14-165 (220)
113 2xot_A Amphoterin-induced prot 99.7 4.1E-16 1.4E-20 164.9 12.8 132 403-536 21-154 (361)
114 2o6s_A Variable lymphocyte rec 99.6 6.6E-16 2.3E-20 149.6 12.8 129 401-529 29-159 (208)
115 4ezg_A Putative uncharacterize 99.6 6.6E-16 2.2E-20 148.0 12.2 149 380-532 46-195 (197)
116 3e6j_A Variable lymphocyte rec 99.6 1.8E-15 6.1E-20 148.6 15.0 146 404-552 23-170 (229)
117 2xot_A Amphoterin-induced prot 99.6 9.9E-16 3.4E-20 161.9 13.8 171 381-552 21-200 (361)
118 1m9s_A Internalin B; cell inva 99.6 1.4E-15 4.8E-20 170.3 15.7 165 379-552 44-208 (605)
119 3e6j_A Variable lymphocyte rec 99.6 2.6E-15 8.8E-20 147.4 14.9 150 380-531 21-172 (229)
120 1xeu_A Internalin C; cellular 99.6 2.6E-16 9.1E-21 157.9 7.8 127 490-649 59-185 (263)
121 1xeu_A Internalin C; cellular 99.6 9.4E-16 3.2E-20 153.9 9.1 142 401-552 20-161 (263)
122 1dce_A Protein (RAB geranylger 99.6 1E-17 3.5E-22 186.6 -8.6 179 442-651 345-548 (567)
123 2ell_A Acidic leucine-rich nuc 99.6 5.4E-15 1.8E-19 137.6 9.6 137 399-536 23-165 (168)
124 2qen_A Walker-type ATPase; unk 99.5 5.4E-14 1.9E-18 148.4 16.7 276 2-299 22-349 (350)
125 1w8a_A SLIT protein; signaling 99.5 2.4E-14 8.2E-19 136.2 11.0 127 403-531 11-139 (192)
126 2je0_A Acidic leucine-rich nuc 99.5 1.7E-14 5.7E-19 131.3 6.8 106 442-549 38-148 (149)
127 4b8c_D Glucose-repressible alc 99.5 1.2E-14 4E-19 167.3 6.7 108 442-552 220-327 (727)
128 2ell_A Acidic leucine-rich nuc 99.5 6.9E-14 2.3E-18 130.1 10.2 21 609-629 143-163 (168)
129 1w8a_A SLIT protein; signaling 99.5 1.7E-13 5.9E-18 130.3 12.6 130 381-511 11-143 (192)
130 2je0_A Acidic leucine-rich nuc 99.5 6.1E-14 2.1E-18 127.5 8.2 128 399-527 16-149 (149)
131 4b8c_D Glucose-repressible alc 99.5 8.2E-15 2.8E-19 168.6 2.9 194 400-646 173-369 (727)
132 3sb4_A Hypothetical leucine ri 99.5 9.7E-14 3.3E-18 144.7 10.2 275 334-642 26-327 (329)
133 2wfh_A SLIT homolog 2 protein 99.5 1.7E-13 5.7E-18 130.3 10.8 34 401-434 32-65 (193)
134 2wfh_A SLIT homolog 2 protein 99.5 4E-13 1.4E-17 127.6 12.4 127 403-531 13-139 (193)
135 2fna_A Conserved hypothetical 99.4 1.4E-12 4.6E-17 138.1 17.3 266 16-297 31-355 (357)
136 1w5s_A Origin recognition comp 99.4 2.4E-12 8.4E-17 139.0 18.3 261 14-284 49-371 (412)
137 2o6r_A Variable lymphocyte rec 99.4 1.2E-12 4.2E-17 122.7 12.8 127 403-531 10-137 (177)
138 1a9n_A U2A', U2A'; complex (nu 99.4 3.4E-13 1.2E-17 126.3 7.6 128 398-552 17-151 (176)
139 1a9n_A U2A', U2A'; complex (nu 99.4 3.5E-13 1.2E-17 126.2 7.3 126 377-505 18-151 (176)
140 2o6r_A Variable lymphocyte rec 99.4 3.6E-12 1.2E-16 119.5 12.3 130 381-511 10-141 (177)
141 3sb4_A Hypothetical leucine ri 99.4 1.9E-12 6.6E-17 134.8 11.0 61 584-647 246-308 (329)
142 2qby_B CDC6 homolog 3, cell di 99.3 1.1E-10 3.8E-15 124.5 23.9 264 3-284 31-339 (384)
143 4fdw_A Leucine rich hypothetic 99.3 6.4E-11 2.2E-15 125.8 19.3 123 401-529 158-282 (401)
144 1ds9_A Outer arm dynein; leuci 99.3 1.9E-14 6.5E-19 137.8 -7.4 147 467-642 15-180 (198)
145 4fs7_A Uncharacterized protein 99.3 2.3E-10 8E-15 122.2 22.7 234 419-698 158-393 (394)
146 1ds9_A Outer arm dynein; leuci 99.2 1.6E-13 5.5E-18 131.3 -4.7 133 411-547 36-180 (198)
147 2qby_A CDC6 homolog 1, cell di 99.2 2.6E-10 8.9E-15 121.8 17.3 271 3-284 31-348 (386)
148 3g39_A Variable lymphocyte rec 99.2 5.5E-11 1.9E-15 110.2 10.2 103 402-506 11-114 (170)
149 2v1u_A Cell division control p 99.2 5.8E-10 2E-14 119.2 19.7 268 3-284 30-351 (387)
150 2r9u_A Variable lymphocyte rec 99.2 8.8E-11 3E-15 109.2 10.1 100 403-504 15-115 (174)
151 4fdw_A Leucine rich hypothetic 99.2 6.1E-10 2.1E-14 118.3 17.8 206 336-550 116-332 (401)
152 2r9u_A Variable lymphocyte rec 99.1 1.4E-10 4.7E-15 107.8 10.4 107 426-534 15-121 (174)
153 3g39_A Variable lymphocyte rec 99.1 1.4E-10 4.9E-15 107.4 10.3 106 424-531 10-115 (170)
154 1fnn_A CDC6P, cell division co 99.1 2E-09 6.9E-14 115.0 20.6 271 3-284 28-351 (389)
155 4fs7_A Uncharacterized protein 99.1 5.3E-10 1.8E-14 119.4 14.3 294 344-703 58-376 (394)
156 1njg_A DNA polymerase III subu 99.0 2.4E-09 8.2E-14 106.3 15.1 186 2-199 33-230 (250)
157 3un9_A NLR family member X1; l 99.0 7.3E-11 2.5E-15 124.1 0.2 61 587-647 182-250 (372)
158 3un9_A NLR family member X1; l 99.0 3.1E-11 1.1E-15 127.0 -2.9 152 401-552 73-250 (372)
159 2chg_A Replication factor C sm 98.9 6.5E-09 2.2E-13 101.4 12.6 173 2-196 27-203 (226)
160 4gt6_A Cell surface protein; l 98.9 4.5E-08 1.5E-12 104.4 19.2 297 345-704 51-368 (394)
161 2ifg_A High affinity nerve gro 98.9 3.5E-09 1.2E-13 111.1 8.7 102 404-507 12-116 (347)
162 4gt6_A Cell surface protein; l 98.8 7.1E-08 2.4E-12 102.9 18.3 307 334-706 65-391 (394)
163 2ifg_A High affinity nerve gro 98.8 1.1E-08 3.8E-13 107.3 10.3 102 428-531 13-116 (347)
164 1sxj_B Activator 1 37 kDa subu 98.8 2.4E-08 8.2E-13 103.6 12.5 168 3-194 32-206 (323)
165 2ra8_A Uncharacterized protein 98.7 1.4E-08 4.9E-13 105.6 6.6 142 486-648 164-319 (362)
166 4h09_A Hypothetical leucine ri 98.7 1.7E-06 5.8E-11 91.7 22.7 279 333-645 46-342 (379)
167 2ra8_A Uncharacterized protein 98.7 9.8E-09 3.4E-13 106.8 4.9 132 419-552 168-318 (362)
168 1iqp_A RFCS; clamp loader, ext 98.6 3.2E-07 1.1E-11 95.2 13.6 172 3-198 36-213 (327)
169 2chq_A Replication factor C sm 98.5 8.5E-07 2.9E-11 91.5 12.5 158 16-196 39-203 (319)
170 3bos_A Putative DNA replicatio 98.4 1.7E-07 5.7E-12 92.5 6.2 151 14-196 51-216 (242)
171 2z4s_A Chromosomal replication 98.4 4E-07 1.4E-11 97.7 7.7 158 15-195 130-304 (440)
172 1jr3_A DNA polymerase III subu 98.4 9.5E-07 3.3E-11 93.4 10.6 182 3-197 27-221 (373)
173 3te6_A Regulatory protein SIR3 98.4 1.7E-06 5.8E-11 87.2 11.3 147 13-165 43-211 (318)
174 1d2n_A N-ethylmaleimide-sensit 98.3 2.5E-05 8.5E-10 78.2 19.1 149 12-189 61-229 (272)
175 4h09_A Hypothetical leucine ri 98.3 1.6E-05 5.4E-10 84.1 17.6 59 584-644 259-318 (379)
176 1a5t_A Delta prime, HOLB; zinc 98.3 9.6E-06 3.3E-10 83.8 15.2 95 96-197 107-205 (334)
177 1jbk_A CLPB protein; beta barr 98.2 2.6E-06 8.9E-11 80.4 9.3 36 3-40 33-68 (195)
178 1l8q_A Chromosomal replication 98.2 1.3E-05 4.5E-10 82.6 15.2 164 5-193 27-204 (324)
179 3uk6_A RUVB-like 2; hexameric 98.2 1E-05 3.4E-10 85.3 14.2 189 4-196 59-302 (368)
180 1hqc_A RUVB; extended AAA-ATPa 98.1 4.7E-06 1.6E-10 86.1 8.7 154 15-200 38-214 (324)
181 3h4m_A Proteasome-activating n 98.1 1.8E-05 6.2E-10 79.9 12.3 157 14-196 50-230 (285)
182 1sxj_D Activator 1 41 kDa subu 98.1 1.3E-05 4.5E-10 83.8 11.7 168 17-196 60-234 (353)
183 1io0_A Tropomodulin; LRR prote 98.1 8E-07 2.7E-11 83.1 2.0 86 467-552 62-162 (185)
184 3pvs_A Replication-associated 98.1 2E-05 6.7E-10 84.3 12.8 163 4-196 41-214 (447)
185 2qz4_A Paraplegin; AAA+, SPG7, 98.1 9.1E-05 3.1E-09 73.6 17.0 159 14-196 38-221 (262)
186 1sxj_A Activator 1 95 kDa subu 98.1 2.3E-05 8E-10 86.0 13.7 164 15-196 77-252 (516)
187 3eie_A Vacuolar protein sortin 98.1 2.9E-05 9.8E-10 79.8 13.3 158 15-198 51-229 (322)
188 3pfi_A Holliday junction ATP-d 98.0 1E-05 3.5E-10 84.0 9.3 162 3-197 40-227 (338)
189 1sxj_E Activator 1 40 kDa subu 98.0 3.1E-06 1.1E-10 88.7 5.2 99 96-196 133-236 (354)
190 3e4g_A ATP synthase subunit S, 98.0 2.2E-06 7.4E-11 77.8 2.6 67 584-651 81-154 (176)
191 3syl_A Protein CBBX; photosynt 98.0 1.6E-05 5.3E-10 81.5 9.4 129 14-165 66-217 (309)
192 1io0_A Tropomodulin; LRR prote 98.0 1.7E-06 5.7E-11 80.9 1.7 60 588-647 93-162 (185)
193 1xwi_A SKD1 protein; VPS4B, AA 98.0 0.00013 4.5E-09 74.6 15.9 159 15-198 45-224 (322)
194 3d8b_A Fidgetin-like protein 1 98.0 7.2E-05 2.5E-09 77.9 13.9 158 15-198 117-296 (357)
195 2qp9_X Vacuolar protein sortin 97.9 5.7E-05 2E-09 78.5 13.0 158 15-198 84-262 (355)
196 3e4g_A ATP synthase subunit S, 97.9 2.7E-06 9.2E-11 77.2 2.4 66 443-508 82-153 (176)
197 2gno_A DNA polymerase III, gam 97.9 3.6E-05 1.2E-09 77.7 10.1 140 2-165 7-152 (305)
198 3cf0_A Transitional endoplasmi 97.8 0.00023 7.9E-09 72.1 15.1 129 14-165 48-199 (301)
199 3u61_B DNA polymerase accessor 97.8 4.8E-05 1.6E-09 78.4 9.9 164 3-194 37-213 (324)
200 2zan_A Vacuolar protein sortin 97.8 0.00029 9.8E-09 75.6 16.0 159 15-198 167-346 (444)
201 3vfd_A Spastin; ATPase, microt 97.8 0.00016 5.4E-09 76.5 13.8 157 15-197 148-326 (389)
202 1sxj_C Activator 1 40 kDa subu 97.8 0.00013 4.4E-09 75.6 12.3 167 4-194 37-209 (340)
203 3rw6_A Nuclear RNA export fact 97.7 1.7E-05 5.9E-10 77.8 4.6 88 586-676 168-259 (267)
204 3ec2_A DNA replication protein 97.7 6.5E-05 2.2E-09 69.8 7.8 26 15-40 38-63 (180)
205 3rw6_A Nuclear RNA export fact 97.6 2.3E-05 8E-10 76.9 3.6 13 519-531 221-233 (267)
206 3n70_A Transport activator; si 97.6 2.5E-05 8.7E-10 69.5 3.0 24 16-39 25-48 (145)
207 2p65_A Hypothetical protein PF 97.6 0.00013 4.6E-09 68.0 8.2 27 15-41 43-69 (187)
208 3b9p_A CG5977-PA, isoform A; A 97.6 0.00089 3E-08 67.8 14.9 157 15-197 54-233 (297)
209 2w58_A DNAI, primosome compone 97.6 0.0001 3.6E-09 69.8 7.0 35 16-50 55-89 (202)
210 3hu3_A Transitional endoplasmi 97.5 0.00046 1.6E-08 74.4 11.7 150 14-189 237-406 (489)
211 2kjq_A DNAA-related protein; s 97.4 7.6E-05 2.6E-09 66.5 3.9 36 15-50 36-71 (149)
212 4b4t_J 26S protease regulatory 97.4 0.0026 8.7E-08 65.7 15.0 150 14-190 181-354 (405)
213 2c9o_A RUVB-like 1; hexameric 97.3 0.002 6.9E-08 69.4 13.9 95 99-196 297-409 (456)
214 1in4_A RUVB, holliday junction 97.3 0.00086 3E-08 69.0 10.1 49 146-196 174-222 (334)
215 3t15_A Ribulose bisphosphate c 97.3 0.003 1E-07 63.5 13.8 28 14-41 35-62 (293)
216 2bjv_A PSP operon transcriptio 97.3 0.00058 2E-08 67.8 8.3 35 16-50 30-64 (265)
217 4b4t_H 26S protease regulatory 97.2 0.0061 2.1E-07 63.9 15.3 151 13-190 241-415 (467)
218 4b4t_L 26S protease subunit RP 97.2 0.0045 1.5E-07 65.1 14.4 151 13-190 213-387 (437)
219 2ce7_A Cell division protein F 97.2 0.0032 1.1E-07 67.3 13.4 149 16-190 50-221 (476)
220 1lv7_A FTSH; alpha/beta domain 97.2 0.0028 9.6E-08 62.5 12.2 26 16-41 46-71 (257)
221 4fcw_A Chaperone protein CLPB; 97.2 0.002 6.9E-08 65.6 11.4 36 15-50 47-82 (311)
222 4b4t_K 26S protease regulatory 97.1 0.0036 1.2E-07 65.6 13.2 30 13-42 204-233 (428)
223 1jr3_D DNA polymerase III, del 97.1 0.0031 1.1E-07 65.2 12.7 165 2-195 7-183 (343)
224 1ofh_A ATP-dependent HSL prote 97.1 0.0024 8.3E-08 64.9 11.8 26 15-40 50-75 (310)
225 3co5_A Putative two-component 97.1 4.8E-05 1.6E-09 67.5 -1.0 24 17-40 29-52 (143)
226 2cvh_A DNA repair and recombin 97.1 0.0016 5.4E-08 62.5 9.6 45 3-50 8-52 (220)
227 3pxi_A Negative regulator of g 97.0 0.0012 4E-08 76.4 9.3 126 16-165 522-675 (758)
228 1ojl_A Transcriptional regulat 97.0 0.0012 4.2E-08 66.6 8.1 37 3-39 13-49 (304)
229 3pxg_A Negative regulator of g 97.0 0.0036 1.2E-07 67.5 12.3 136 3-165 191-338 (468)
230 4b4t_M 26S protease regulatory 97.0 0.005 1.7E-07 64.6 12.7 149 13-189 213-386 (434)
231 2vhj_A Ntpase P4, P4; non- hyd 97.0 0.00078 2.7E-08 67.0 5.9 72 15-109 123-194 (331)
232 1qvr_A CLPB protein; coiled co 97.0 0.0025 8.4E-08 74.6 11.1 139 3-164 181-344 (854)
233 4b4t_I 26S protease regulatory 96.9 0.0083 2.9E-07 62.2 13.2 30 14-43 215-244 (437)
234 1r6b_X CLPA protein; AAA+, N-t 96.9 0.0055 1.9E-07 70.9 13.0 141 3-165 197-362 (758)
235 1ixz_A ATP-dependent metallopr 96.9 0.005 1.7E-07 60.5 10.8 23 18-40 52-74 (254)
236 3m6a_A ATP-dependent protease 96.8 0.0015 5.1E-08 71.9 7.3 28 15-42 108-135 (543)
237 3pxi_A Negative regulator of g 96.8 0.019 6.4E-07 66.3 16.9 135 3-165 191-338 (758)
238 1g5t_A COB(I)alamin adenosyltr 96.8 0.0013 4.4E-08 60.4 5.4 112 16-135 29-163 (196)
239 1iy2_A ATP-dependent metallopr 96.8 0.0079 2.7E-07 60.0 11.6 23 18-40 76-98 (278)
240 2x8a_A Nuclear valosin-contain 96.7 0.013 4.4E-07 58.1 12.8 124 18-165 47-191 (274)
241 3hr8_A Protein RECA; alpha and 96.7 0.0026 8.9E-08 65.1 7.8 97 3-108 48-150 (356)
242 2qgz_A Helicase loader, putati 96.7 0.0031 1E-07 63.8 8.1 46 5-50 141-188 (308)
243 3cf2_A TER ATPase, transitiona 96.7 0.0038 1.3E-07 70.8 9.7 151 14-190 237-407 (806)
244 4a74_A DNA repair and recombin 96.7 0.0032 1.1E-07 60.8 7.7 48 3-50 13-66 (231)
245 2w0m_A SSO2452; RECA, SSPF, un 96.6 0.0029 9.8E-08 61.3 7.0 35 16-50 24-58 (235)
246 2r62_A Cell division protease 96.6 0.00085 2.9E-08 66.7 2.7 27 16-42 45-71 (268)
247 2ehv_A Hypothetical protein PH 96.5 0.0028 9.4E-08 62.2 6.3 36 15-50 30-66 (251)
248 1n0w_A DNA repair protein RAD5 96.5 0.0057 1.9E-07 59.6 8.0 48 3-50 12-65 (243)
249 1v5w_A DMC1, meiotic recombina 96.5 0.011 3.8E-07 60.7 10.5 48 3-50 110-163 (343)
250 3io5_A Recombination and repai 96.4 0.0093 3.2E-07 59.0 9.1 48 2-50 12-65 (333)
251 2b8t_A Thymidine kinase; deoxy 96.4 0.0011 3.7E-08 63.0 2.2 110 15-134 12-125 (223)
252 1xp8_A RECA protein, recombina 96.3 0.0089 3E-07 61.6 8.6 83 15-106 74-161 (366)
253 2z43_A DNA repair and recombin 96.3 0.0092 3.1E-07 60.9 8.5 47 4-50 96-148 (324)
254 1odf_A YGR205W, hypothetical 3 96.2 0.033 1.1E-06 55.4 11.9 31 11-41 27-57 (290)
255 1vma_A Cell division protein F 96.1 0.019 6.4E-07 57.6 9.5 37 14-50 103-139 (306)
256 2dhr_A FTSH; AAA+ protein, hex 96.1 0.033 1.1E-06 59.9 11.8 121 18-165 67-214 (499)
257 1u94_A RECA protein, recombina 95.9 0.0087 3E-07 61.5 6.3 37 14-50 62-98 (356)
258 1ypw_A Transitional endoplasmi 95.9 0.031 1.1E-06 64.5 11.6 29 14-42 237-265 (806)
259 1pgv_A TMD-1, tropomodulin TMD 95.9 0.0026 9E-08 58.7 2.1 61 492-552 96-168 (197)
260 2i1q_A DNA repair and recombin 95.9 0.016 5.6E-07 59.0 8.3 36 4-39 87-122 (322)
261 2zr9_A Protein RECA, recombina 95.9 0.011 3.6E-07 60.8 6.6 47 4-50 49-96 (349)
262 3c8u_A Fructokinase; YP_612366 95.8 0.0067 2.3E-07 57.4 4.7 37 4-40 11-47 (208)
263 1ex7_A Guanylate kinase; subst 95.8 0.0032 1.1E-07 57.9 2.2 29 16-44 2-30 (186)
264 1zu4_A FTSY; GTPase, signal re 95.8 0.041 1.4E-06 55.6 10.6 37 14-50 104-140 (320)
265 3jvv_A Twitching mobility prot 95.8 0.019 6.6E-07 58.9 8.3 110 16-137 124-233 (356)
266 1r6b_X CLPA protein; AAA+, N-t 95.8 0.0092 3.1E-07 69.0 6.6 26 15-40 488-513 (758)
267 3sr0_A Adenylate kinase; phosp 95.8 0.042 1.4E-06 51.5 9.8 23 17-39 2-24 (206)
268 1qhx_A CPT, protein (chloramph 95.8 0.0052 1.8E-07 56.5 3.4 25 16-40 4-28 (178)
269 2orw_A Thymidine kinase; TMTK, 95.7 0.0059 2E-07 56.3 3.8 25 16-40 4-28 (184)
270 3bh0_A DNAB-like replicative h 95.7 0.04 1.4E-06 55.8 10.1 61 3-70 57-117 (315)
271 3kb2_A SPBC2 prophage-derived 95.7 0.0056 1.9E-07 55.9 3.4 25 16-40 2-26 (173)
272 2yvu_A Probable adenylyl-sulfa 95.7 0.013 4.4E-07 54.3 5.9 28 14-41 12-39 (186)
273 3rfe_A Platelet glycoprotein I 95.6 0.017 5.8E-07 49.7 6.0 33 401-433 32-65 (130)
274 3fwy_A Light-independent proto 95.6 0.012 4.1E-07 59.4 5.4 38 13-50 46-83 (314)
275 3kl4_A SRP54, signal recogniti 95.6 0.04 1.4E-06 57.8 9.6 37 14-50 96-132 (433)
276 1pzn_A RAD51, DNA repair and r 95.5 0.024 8.2E-07 58.3 7.6 49 3-51 119-173 (349)
277 3vaa_A Shikimate kinase, SK; s 95.5 0.0081 2.8E-07 56.4 3.6 26 15-40 25-50 (199)
278 1nks_A Adenylate kinase; therm 95.4 0.015 5.3E-07 54.1 5.5 26 16-41 2-27 (194)
279 3rfe_A Platelet glycoprotein I 95.4 0.019 6.3E-07 49.4 5.4 54 404-459 12-68 (130)
280 3trf_A Shikimate kinase, SK; a 95.4 0.0084 2.9E-07 55.5 3.4 26 15-40 5-30 (185)
281 3uie_A Adenylyl-sulfate kinase 95.4 0.017 5.8E-07 54.2 5.5 27 14-40 24-50 (200)
282 1kgd_A CASK, peripheral plasma 95.3 0.0076 2.6E-07 55.5 2.9 25 16-40 6-30 (180)
283 1xjc_A MOBB protein homolog; s 95.3 0.016 5.3E-07 52.2 4.7 34 14-47 3-37 (169)
284 1rz3_A Hypothetical protein rb 95.3 0.023 7.9E-07 53.3 6.2 38 3-40 9-47 (201)
285 4eun_A Thermoresistant glucoki 95.3 0.11 3.9E-06 48.4 11.0 25 15-39 29-53 (200)
286 2xxa_A Signal recognition part 95.2 0.087 3E-06 55.6 10.9 37 14-50 99-136 (433)
287 1j8m_F SRP54, signal recogniti 95.2 0.045 1.6E-06 54.6 8.2 36 15-50 98-133 (297)
288 1ly1_A Polynucleotide kinase; 95.1 0.012 4.1E-07 54.1 3.7 22 16-37 3-24 (181)
289 1tue_A Replication protein E1; 95.1 0.012 4.1E-07 54.2 3.4 38 3-41 47-84 (212)
290 3cf2_A TER ATPase, transitiona 95.1 0.014 4.7E-07 66.3 4.6 27 15-41 511-537 (806)
291 3dm5_A SRP54, signal recogniti 95.1 0.034 1.2E-06 58.4 7.2 36 14-49 99-134 (443)
292 3lw7_A Adenylate kinase relate 95.1 0.012 4E-07 53.9 3.3 22 16-38 2-23 (179)
293 2rhm_A Putative kinase; P-loop 95.0 0.018 6.1E-07 53.6 4.5 26 14-39 4-29 (193)
294 3a00_A Guanylate kinase, GMP k 95.0 0.011 3.9E-07 54.7 3.1 28 16-43 2-29 (186)
295 1zuh_A Shikimate kinase; alpha 95.0 0.013 4.5E-07 53.2 3.5 26 15-40 7-32 (168)
296 3ney_A 55 kDa erythrocyte memb 95.0 0.011 3.7E-07 54.8 2.9 28 14-41 18-45 (197)
297 3lda_A DNA repair protein RAD5 95.0 0.049 1.7E-06 56.8 8.2 48 3-50 166-219 (400)
298 3hjn_A DTMP kinase, thymidylat 95.0 0.049 1.7E-06 50.7 7.3 33 17-49 2-34 (197)
299 3tau_A Guanylate kinase, GMP k 95.0 0.011 3.9E-07 55.8 3.0 27 15-41 8-34 (208)
300 2dr3_A UPF0273 protein PH0284; 94.9 0.018 6.3E-07 56.0 4.6 48 3-50 11-58 (247)
301 1uj2_A Uridine-cytidine kinase 94.9 0.016 5.6E-07 56.7 4.0 29 12-40 19-47 (252)
302 2ze6_A Isopentenyl transferase 94.9 0.016 5.6E-07 56.6 4.0 25 16-40 2-26 (253)
303 1kag_A SKI, shikimate kinase I 94.9 0.013 4.3E-07 53.6 2.9 25 16-40 5-29 (173)
304 3ice_A Transcription terminati 94.9 0.042 1.4E-06 55.9 6.8 26 16-41 175-200 (422)
305 3iij_A Coilin-interacting nucl 94.9 0.012 3.9E-07 54.3 2.6 25 15-39 11-35 (180)
306 1zp6_A Hypothetical protein AT 94.9 0.015 5.1E-07 54.1 3.5 24 15-38 9-32 (191)
307 1pgv_A TMD-1, tropomodulin TMD 94.8 0.016 5.6E-07 53.4 3.6 86 467-552 38-137 (197)
308 1kht_A Adenylate kinase; phosp 94.8 0.017 5.7E-07 53.7 3.8 26 16-41 4-29 (192)
309 2px0_A Flagellar biosynthesis 94.8 0.072 2.4E-06 53.2 8.5 27 14-40 104-130 (296)
310 4a1f_A DNAB helicase, replicat 94.8 0.088 3E-06 53.3 9.2 51 15-71 46-96 (338)
311 1qvr_A CLPB protein; coiled co 94.8 0.062 2.1E-06 62.8 9.3 36 15-50 588-623 (854)
312 1gvn_B Zeta; postsegregational 94.8 0.027 9.4E-07 56.1 5.4 26 14-39 32-57 (287)
313 2jaq_A Deoxyguanosine kinase; 94.8 0.016 5.6E-07 54.5 3.6 24 17-40 2-25 (205)
314 3tlx_A Adenylate kinase 2; str 94.8 0.018 6.3E-07 55.9 4.0 27 13-39 27-53 (243)
315 2plr_A DTMP kinase, probable t 94.8 0.03 1E-06 53.0 5.5 28 16-43 5-32 (213)
316 3t61_A Gluconokinase; PSI-biol 94.8 0.015 5.2E-07 54.6 3.3 25 15-39 18-42 (202)
317 3e70_C DPA, signal recognition 94.7 0.036 1.2E-06 56.2 6.1 28 14-41 128-155 (328)
318 1knq_A Gluconate kinase; ALFA/ 94.7 0.022 7.6E-07 52.0 4.2 25 15-39 8-32 (175)
319 1via_A Shikimate kinase; struc 94.7 0.015 5.3E-07 53.1 3.1 25 16-40 5-29 (175)
320 3umf_A Adenylate kinase; rossm 94.7 0.025 8.5E-07 53.4 4.5 28 12-39 26-53 (217)
321 1ukz_A Uridylate kinase; trans 94.7 0.022 7.5E-07 53.5 4.2 27 13-39 13-39 (203)
322 2q6t_A DNAB replication FORK h 94.7 0.12 4.1E-06 55.2 10.4 61 4-71 190-251 (444)
323 2c95_A Adenylate kinase 1; tra 94.6 0.018 6.1E-07 53.8 3.3 25 15-39 9-33 (196)
324 2ewv_A Twitching motility prot 94.6 0.072 2.5E-06 55.2 8.2 108 15-135 136-244 (372)
325 1nn5_A Similar to deoxythymidy 94.6 0.028 9.6E-07 53.3 4.7 28 15-42 9-36 (215)
326 2bdt_A BH3686; alpha-beta prot 94.5 0.023 7.9E-07 52.7 3.7 31 16-50 3-33 (189)
327 2iyv_A Shikimate kinase, SK; t 94.5 0.017 5.6E-07 53.4 2.7 25 16-40 3-27 (184)
328 3p32_A Probable GTPase RV1496/ 94.4 0.054 1.8E-06 55.9 6.8 34 8-41 72-105 (355)
329 1sky_E F1-ATPase, F1-ATP synth 94.4 0.14 4.7E-06 54.0 9.8 33 17-49 153-186 (473)
330 2ffh_A Protein (FFH); SRP54, s 94.4 0.078 2.7E-06 55.5 8.0 37 14-50 97-133 (425)
331 3bgw_A DNAB-like replicative h 94.4 0.13 4.4E-06 54.7 9.8 46 4-50 187-232 (444)
332 1tev_A UMP-CMP kinase; ploop, 94.4 0.026 8.9E-07 52.6 4.0 25 15-39 3-27 (196)
333 1uf9_A TT1252 protein; P-loop, 94.4 0.025 8.7E-07 53.1 3.9 26 13-38 6-31 (203)
334 3b9q_A Chloroplast SRP recepto 94.4 0.05 1.7E-06 54.5 6.2 35 14-49 99-133 (302)
335 1y63_A LMAJ004144AAA protein; 94.4 0.025 8.7E-07 52.1 3.8 25 14-38 9-33 (184)
336 2qor_A Guanylate kinase; phosp 94.4 0.018 6.2E-07 54.2 2.8 27 14-40 11-37 (204)
337 1e6c_A Shikimate kinase; phosp 94.4 0.018 6.3E-07 52.4 2.7 25 16-40 3-27 (173)
338 3tr0_A Guanylate kinase, GMP k 94.3 0.023 7.9E-07 53.5 3.5 24 16-39 8-31 (205)
339 2pt5_A Shikimate kinase, SK; a 94.3 0.027 9.3E-07 51.0 3.8 24 17-40 2-25 (168)
340 3llm_A ATP-dependent RNA helic 94.3 0.24 8.2E-06 47.5 10.8 22 16-37 77-98 (235)
341 3cm0_A Adenylate kinase; ATP-b 94.3 0.028 9.4E-07 52.0 3.9 25 15-39 4-28 (186)
342 3a4m_A L-seryl-tRNA(SEC) kinas 94.3 0.025 8.7E-07 55.5 3.8 26 15-40 4-29 (260)
343 1qf9_A UMP/CMP kinase, protein 94.3 0.028 9.6E-07 52.2 3.9 26 15-40 6-31 (194)
344 2bwj_A Adenylate kinase 5; pho 94.2 0.026 9E-07 52.8 3.6 25 16-40 13-37 (199)
345 2vli_A Antibiotic resistance p 94.2 0.018 6.1E-07 53.1 2.3 26 15-40 5-30 (183)
346 3asz_A Uridine kinase; cytidin 94.2 0.032 1.1E-06 52.8 4.2 27 14-40 5-31 (211)
347 2cdn_A Adenylate kinase; phosp 94.2 0.029 1E-06 52.6 3.8 26 15-40 20-45 (201)
348 1ye8_A Protein THEP1, hypothet 94.2 0.025 8.7E-07 51.7 3.3 24 17-40 2-25 (178)
349 1cke_A CK, MSSA, protein (cyti 94.2 0.028 9.7E-07 53.9 3.7 24 16-39 6-29 (227)
350 1rj9_A FTSY, signal recognitio 94.1 0.042 1.5E-06 55.0 5.0 36 14-50 101-136 (304)
351 2pt7_A CAG-ALFA; ATPase, prote 94.1 0.069 2.4E-06 54.3 6.7 86 16-116 172-259 (330)
352 2z0h_A DTMP kinase, thymidylat 94.1 0.066 2.2E-06 49.9 6.1 25 17-41 2-26 (197)
353 1aky_A Adenylate kinase; ATP:A 94.1 0.026 8.9E-07 53.9 3.3 26 15-40 4-29 (220)
354 2og2_A Putative signal recogni 94.1 0.062 2.1E-06 55.0 6.3 28 14-41 156-183 (359)
355 1lvg_A Guanylate kinase, GMP k 94.1 0.021 7.1E-07 53.5 2.5 25 16-40 5-29 (198)
356 2hf9_A Probable hydrogenase ni 94.1 0.057 1.9E-06 51.6 5.7 28 14-41 37-64 (226)
357 1htw_A HI0065; nucleotide-bind 94.1 0.05 1.7E-06 48.5 4.9 27 13-39 31-57 (158)
358 2if2_A Dephospho-COA kinase; a 94.0 0.028 9.7E-07 52.8 3.4 22 16-37 2-23 (204)
359 1zak_A Adenylate kinase; ATP:A 94.0 0.023 7.9E-07 54.3 2.8 26 15-40 5-30 (222)
360 2j41_A Guanylate kinase; GMP, 94.0 0.029 1E-06 52.8 3.5 24 16-39 7-30 (207)
361 3cmu_A Protein RECA, recombina 94.0 0.051 1.8E-06 67.4 6.3 96 3-107 1414-1515(2050)
362 3end_A Light-independent proto 94.0 0.052 1.8E-06 54.9 5.4 38 13-50 39-76 (307)
363 2wwf_A Thymidilate kinase, put 94.0 0.033 1.1E-06 52.7 3.7 27 15-41 10-36 (212)
364 2qt1_A Nicotinamide riboside k 94.0 0.033 1.1E-06 52.5 3.7 26 14-39 20-45 (207)
365 2pbr_A DTMP kinase, thymidylat 93.9 0.034 1.2E-06 51.7 3.8 24 17-40 2-25 (195)
366 2r6a_A DNAB helicase, replicat 93.9 0.21 7.1E-06 53.5 10.3 36 15-50 203-239 (454)
367 2bbw_A Adenylate kinase 4, AK4 93.9 0.033 1.1E-06 54.2 3.7 26 15-40 27-52 (246)
368 1cp2_A CP2, nitrogenase iron p 93.9 0.057 2E-06 53.3 5.5 35 16-50 2-36 (269)
369 1np6_A Molybdopterin-guanine d 93.8 0.057 2E-06 48.9 4.9 28 14-41 5-32 (174)
370 4gp7_A Metallophosphoesterase; 93.8 0.03 1E-06 50.9 3.0 21 15-35 9-29 (171)
371 2j9r_A Thymidine kinase; TK1, 93.8 0.23 7.7E-06 46.3 8.9 108 15-135 28-138 (214)
372 1jjv_A Dephospho-COA kinase; P 93.8 0.035 1.2E-06 52.3 3.5 22 16-37 3-24 (206)
373 2zts_A Putative uncharacterize 93.8 0.042 1.4E-06 53.5 4.3 48 3-50 18-66 (251)
374 3a8t_A Adenylate isopentenyltr 93.8 0.025 8.6E-07 56.8 2.6 25 16-40 41-65 (339)
375 3hws_A ATP-dependent CLP prote 93.8 0.033 1.1E-06 57.8 3.6 26 15-40 51-76 (363)
376 2wsm_A Hydrogenase expression/ 93.8 0.061 2.1E-06 51.2 5.3 29 14-42 29-57 (221)
377 3exa_A TRNA delta(2)-isopenten 93.7 0.036 1.2E-06 55.0 3.5 26 15-40 3-28 (322)
378 3fb4_A Adenylate kinase; psych 93.7 0.039 1.3E-06 52.4 3.7 23 17-39 2-24 (216)
379 3d3q_A TRNA delta(2)-isopenten 93.7 0.04 1.4E-06 55.6 3.9 25 16-40 8-32 (340)
380 2grj_A Dephospho-COA kinase; T 93.7 0.038 1.3E-06 51.2 3.5 25 15-39 12-36 (192)
381 4e22_A Cytidylate kinase; P-lo 93.7 0.036 1.2E-06 54.1 3.5 25 16-40 28-52 (252)
382 2afh_E Nitrogenase iron protei 93.7 0.062 2.1E-06 53.7 5.4 36 15-50 2-37 (289)
383 1gtv_A TMK, thymidylate kinase 93.7 0.025 8.6E-07 53.6 2.3 25 17-41 2-26 (214)
384 3foz_A TRNA delta(2)-isopenten 93.6 0.046 1.6E-06 54.1 4.1 26 14-39 9-34 (316)
385 2r8r_A Sensor protein; KDPD, P 93.6 0.069 2.4E-06 50.2 5.1 31 16-46 7-38 (228)
386 1zd8_A GTP:AMP phosphotransfer 93.6 0.035 1.2E-06 53.2 3.2 25 15-39 7-31 (227)
387 3r20_A Cytidylate kinase; stru 93.6 0.042 1.4E-06 52.4 3.6 25 16-40 10-34 (233)
388 1znw_A Guanylate kinase, GMP k 93.6 0.038 1.3E-06 52.1 3.3 25 15-39 20-44 (207)
389 2pez_A Bifunctional 3'-phospho 93.6 0.046 1.6E-06 50.1 3.8 26 15-40 5-30 (179)
390 2jeo_A Uridine-cytidine kinase 93.6 0.044 1.5E-06 53.2 3.9 26 14-39 24-49 (245)
391 3tqc_A Pantothenate kinase; bi 93.5 0.05 1.7E-06 54.7 4.3 29 12-40 89-117 (321)
392 2j37_W Signal recognition part 93.5 0.093 3.2E-06 56.3 6.5 37 14-50 100-136 (504)
393 3crm_A TRNA delta(2)-isopenten 93.5 0.039 1.3E-06 55.3 3.4 25 16-40 6-30 (323)
394 2eyu_A Twitching motility prot 93.5 0.066 2.3E-06 52.3 5.0 109 15-136 25-134 (261)
395 3nwj_A ATSK2; P loop, shikimat 93.5 0.033 1.1E-06 54.0 2.7 25 16-40 49-73 (250)
396 3aez_A Pantothenate kinase; tr 93.5 0.044 1.5E-06 55.2 3.8 28 13-40 88-115 (312)
397 2f6r_A COA synthase, bifunctio 93.5 0.046 1.6E-06 54.3 3.9 25 13-37 73-97 (281)
398 3dl0_A Adenylate kinase; phosp 93.4 0.042 1.4E-06 52.2 3.4 23 17-39 2-24 (216)
399 1m7g_A Adenylylsulfate kinase; 93.4 0.056 1.9E-06 51.1 4.3 26 15-40 25-50 (211)
400 4hlc_A DTMP kinase, thymidylat 93.4 0.074 2.5E-06 49.8 5.0 30 16-45 3-32 (205)
401 1q57_A DNA primase/helicase; d 93.4 0.23 7.9E-06 54.0 9.7 61 4-71 232-293 (503)
402 1s96_A Guanylate kinase, GMP k 93.4 0.042 1.4E-06 52.1 3.3 26 15-40 16-41 (219)
403 1z6g_A Guanylate kinase; struc 93.4 0.034 1.2E-06 52.8 2.7 25 15-39 23-47 (218)
404 2v3c_C SRP54, signal recogniti 93.4 0.041 1.4E-06 58.0 3.5 37 14-50 98-134 (432)
405 3zvl_A Bifunctional polynucleo 93.4 0.18 6.2E-06 53.1 8.5 26 14-39 257-282 (416)
406 2f1r_A Molybdopterin-guanine d 93.4 0.032 1.1E-06 50.5 2.3 26 16-41 3-28 (171)
407 2i3b_A HCR-ntpase, human cance 93.3 0.046 1.6E-06 50.5 3.2 24 17-40 3-26 (189)
408 1yrb_A ATP(GTP)binding protein 93.3 0.089 3E-06 51.6 5.6 27 14-40 13-39 (262)
409 2ga8_A Hypothetical 39.9 kDa p 93.2 0.069 2.4E-06 54.0 4.7 31 13-43 22-52 (359)
410 3be4_A Adenylate kinase; malar 93.2 0.042 1.5E-06 52.2 3.1 24 16-39 6-29 (217)
411 2v54_A DTMP kinase, thymidylat 93.2 0.049 1.7E-06 51.1 3.5 24 16-39 5-28 (204)
412 1vht_A Dephospho-COA kinase; s 93.2 0.058 2E-06 51.3 4.0 23 15-37 4-26 (218)
413 3zq6_A Putative arsenical pump 93.2 0.1 3.5E-06 53.0 6.0 47 4-50 3-49 (324)
414 3ake_A Cytidylate kinase; CMP 93.2 0.056 1.9E-06 50.9 3.8 24 17-40 4-27 (208)
415 2p5t_B PEZT; postsegregational 93.2 0.048 1.7E-06 53.2 3.4 27 14-40 31-57 (253)
416 3l0o_A Transcription terminati 93.1 0.17 5.8E-06 51.4 7.3 37 4-41 165-201 (427)
417 3e1s_A Exodeoxyribonuclease V, 93.1 0.32 1.1E-05 53.5 10.2 27 16-42 205-231 (574)
418 1ls1_A Signal recognition part 93.1 0.09 3.1E-06 52.5 5.3 37 14-50 97-133 (295)
419 2xb4_A Adenylate kinase; ATP-b 93.0 0.06 2.1E-06 51.4 3.7 23 17-39 2-24 (223)
420 1ak2_A Adenylate kinase isoenz 93.0 0.056 1.9E-06 52.0 3.6 26 15-40 16-41 (233)
421 4edh_A DTMP kinase, thymidylat 93.0 0.16 5.5E-06 47.8 6.6 27 16-42 7-33 (213)
422 1tf7_A KAIC; homohexamer, hexa 93.0 0.3 1E-05 53.4 9.7 36 15-50 281-316 (525)
423 2qmh_A HPR kinase/phosphorylas 93.0 0.047 1.6E-06 50.0 2.7 24 16-39 35-58 (205)
424 1e4v_A Adenylate kinase; trans 92.9 0.061 2.1E-06 50.9 3.7 23 17-39 2-24 (214)
425 1a7j_A Phosphoribulokinase; tr 92.9 0.032 1.1E-06 55.6 1.7 27 14-40 4-30 (290)
426 4eaq_A DTMP kinase, thymidylat 92.8 0.12 4.2E-06 49.4 5.7 28 14-41 25-52 (229)
427 1u0j_A DNA replication protein 92.8 0.084 2.9E-06 51.1 4.4 36 4-39 93-128 (267)
428 1cr0_A DNA primase/helicase; R 92.8 0.095 3.2E-06 52.6 5.1 36 15-50 35-71 (296)
429 1nlf_A Regulatory protein REPA 92.7 0.11 3.6E-06 51.7 5.3 26 16-41 31-56 (279)
430 3eph_A TRNA isopentenyltransfe 92.6 0.068 2.3E-06 55.0 3.7 25 16-40 3-27 (409)
431 2p67_A LAO/AO transport system 92.6 0.16 5.5E-06 52.0 6.5 30 12-41 53-82 (341)
432 3lnc_A Guanylate kinase, GMP k 92.5 0.043 1.5E-06 52.7 2.1 24 16-39 28-52 (231)
433 2yhs_A FTSY, cell division pro 92.5 0.11 3.7E-06 55.1 5.1 36 14-50 292-327 (503)
434 4dzz_A Plasmid partitioning pr 92.5 0.11 3.7E-06 48.8 4.7 35 16-50 2-37 (206)
435 3cmw_A Protein RECA, recombina 92.4 0.18 6.1E-06 61.9 7.6 36 15-50 732-767 (1706)
436 2ck3_D ATP synthase subunit be 92.4 0.31 1.1E-05 51.2 8.3 52 16-70 154-206 (482)
437 1sq5_A Pantothenate kinase; P- 92.4 0.081 2.8E-06 53.3 3.9 28 13-40 78-105 (308)
438 1um8_A ATP-dependent CLP prote 92.3 0.068 2.3E-06 55.8 3.4 26 15-40 72-97 (376)
439 1fx0_B ATP synthase beta chain 92.3 0.32 1.1E-05 51.3 8.3 52 16-70 166-218 (498)
440 2onk_A Molybdate/tungstate ABC 92.3 0.074 2.5E-06 51.2 3.3 22 16-37 25-46 (240)
441 1svm_A Large T antigen; AAA+ f 92.2 0.1 3.6E-06 53.8 4.6 29 11-39 165-193 (377)
442 3b85_A Phosphate starvation-in 92.2 0.059 2E-06 50.6 2.4 23 16-38 23-45 (208)
443 3tif_A Uncharacterized ABC tra 92.2 0.065 2.2E-06 51.5 2.8 22 16-37 32-53 (235)
444 2pcj_A ABC transporter, lipopr 92.2 0.065 2.2E-06 51.1 2.7 22 16-37 31-52 (224)
445 3io3_A DEHA2D07832P; chaperone 92.1 0.15 5E-06 52.2 5.5 44 5-50 10-55 (348)
446 2ocp_A DGK, deoxyguanosine kin 92.1 0.093 3.2E-06 50.7 3.8 26 15-40 2-27 (241)
447 2o8b_B DNA mismatch repair pro 92.1 0.12 4E-06 60.9 5.2 23 15-37 789-811 (1022)
448 1oix_A RAS-related protein RAB 92.0 0.11 3.6E-06 48.2 4.0 24 15-38 29-52 (191)
449 1ltq_A Polynucleotide kinase; 92.0 0.088 3E-06 52.9 3.7 23 16-38 3-25 (301)
450 3iqw_A Tail-anchored protein t 92.0 0.17 5.9E-06 51.3 5.8 37 14-50 15-51 (334)
451 2dyk_A GTP-binding protein; GT 91.9 0.1 3.5E-06 46.5 3.7 22 16-37 2-23 (161)
452 2fz4_A DNA repair protein RAD2 91.9 0.9 3.1E-05 43.5 10.6 22 18-39 111-132 (237)
453 3fkq_A NTRC-like two-domain pr 91.8 0.16 5.6E-06 52.7 5.5 38 13-50 141-179 (373)
454 3lv8_A DTMP kinase, thymidylat 91.8 0.2 6.9E-06 47.8 5.7 35 15-49 27-62 (236)
455 3v9p_A DTMP kinase, thymidylat 91.8 0.17 5.9E-06 48.0 5.2 28 15-42 25-52 (227)
456 1q3t_A Cytidylate kinase; nucl 91.8 0.099 3.4E-06 50.4 3.6 26 14-39 15-40 (236)
457 4tmk_A Protein (thymidylate ki 91.8 0.24 8.2E-06 46.5 6.1 33 16-48 4-37 (213)
458 2cbz_A Multidrug resistance-as 91.8 0.077 2.6E-06 51.0 2.8 23 16-38 32-54 (237)
459 3ld9_A DTMP kinase, thymidylat 91.7 0.23 8E-06 46.9 6.0 28 14-41 20-47 (223)
460 1tq4_A IIGP1, interferon-induc 91.7 0.072 2.4E-06 55.7 2.6 34 4-37 58-91 (413)
461 2r44_A Uncharacterized protein 91.7 0.074 2.5E-06 54.4 2.8 26 17-42 48-73 (331)
462 3gfo_A Cobalt import ATP-bindi 91.7 0.078 2.7E-06 52.2 2.8 22 16-37 35-56 (275)
463 2wji_A Ferrous iron transport 91.7 0.12 4.1E-06 46.5 3.8 22 16-37 4-25 (165)
464 3cmw_A Protein RECA, recombina 91.6 0.18 6.3E-06 61.8 6.4 48 3-50 21-69 (1706)
465 2d2e_A SUFC protein; ABC-ATPas 91.6 0.095 3.3E-06 50.9 3.3 23 16-38 30-52 (250)
466 3fdi_A Uncharacterized protein 91.6 0.11 3.8E-06 48.5 3.6 25 16-40 7-31 (201)
467 3kjh_A CO dehydrogenase/acetyl 91.6 0.15 5.1E-06 49.6 4.8 33 18-50 3-35 (254)
468 1b0u_A Histidine permease; ABC 91.6 0.081 2.8E-06 51.8 2.8 22 16-37 33-54 (262)
469 2qm8_A GTPase/ATPase; G protei 91.6 0.26 8.8E-06 50.2 6.6 29 12-40 52-80 (337)
470 3ug7_A Arsenical pump-driving 91.5 0.27 9.2E-06 50.4 6.8 39 12-50 23-61 (349)
471 2zu0_C Probable ATP-dependent 91.5 0.098 3.3E-06 51.3 3.3 23 16-38 47-69 (267)
472 1sgw_A Putative ABC transporte 91.5 0.073 2.5E-06 50.2 2.2 22 16-37 36-57 (214)
473 1ji0_A ABC transporter; ATP bi 91.5 0.087 3E-06 50.8 2.8 22 16-37 33-54 (240)
474 2zej_A Dardarin, leucine-rich 91.4 0.082 2.8E-06 48.6 2.5 21 17-37 4-24 (184)
475 2f9l_A RAB11B, member RAS onco 91.4 0.11 3.8E-06 48.4 3.5 24 15-38 5-28 (199)
476 1mv5_A LMRA, multidrug resista 91.4 0.095 3.3E-06 50.6 3.0 22 16-37 29-50 (243)
477 3cmu_A Protein RECA, recombina 91.4 0.3 1E-05 60.8 7.9 96 3-107 370-471 (2050)
478 4g1u_C Hemin import ATP-bindin 91.4 0.089 3E-06 51.6 2.8 22 16-37 38-59 (266)
479 2olj_A Amino acid ABC transpor 91.4 0.089 3.1E-06 51.4 2.8 22 16-37 51-72 (263)
480 2pze_A Cystic fibrosis transme 91.3 0.091 3.1E-06 50.2 2.8 23 16-38 35-57 (229)
481 1g6h_A High-affinity branched- 91.3 0.091 3.1E-06 51.3 2.8 22 16-37 34-55 (257)
482 2ff7_A Alpha-hemolysin translo 91.3 0.092 3.1E-06 50.9 2.8 22 16-37 36-57 (247)
483 1vpl_A ABC transporter, ATP-bi 91.2 0.095 3.3E-06 51.0 2.8 22 16-37 42-63 (256)
484 2qi9_C Vitamin B12 import ATP- 91.1 0.1 3.4E-06 50.6 2.8 24 16-39 27-50 (249)
485 2ghi_A Transport protein; mult 91.0 0.1 3.5E-06 51.0 2.8 23 16-38 47-69 (260)
486 2ixe_A Antigen peptide transpo 91.0 0.1 3.5E-06 51.3 2.8 22 16-37 46-67 (271)
487 2axn_A 6-phosphofructo-2-kinas 91.0 0.22 7.4E-06 54.1 5.6 30 14-43 34-63 (520)
488 3cwq_A Para family chromosome 90.9 0.22 7.4E-06 46.9 4.9 33 17-50 2-35 (209)
489 2v9p_A Replication protein E1; 90.8 0.17 5.8E-06 50.4 4.2 26 14-39 125-150 (305)
490 2nq2_C Hypothetical ABC transp 90.8 0.11 3.7E-06 50.5 2.8 22 16-37 32-53 (253)
491 2ihy_A ABC transporter, ATP-bi 90.8 0.11 3.7E-06 51.3 2.8 22 16-37 48-69 (279)
492 1g41_A Heat shock protein HSLU 90.8 0.13 4.3E-06 54.1 3.4 29 15-43 50-78 (444)
493 3ea0_A ATPase, para family; al 90.8 0.27 9.4E-06 47.4 5.7 37 14-50 3-41 (245)
494 2yz2_A Putative ABC transporte 90.7 0.11 3.8E-06 51.0 2.8 22 16-37 34-55 (266)
495 3vr4_D V-type sodium ATPase su 90.7 0.18 6.2E-06 52.6 4.4 25 17-41 153-177 (465)
496 2wjg_A FEOB, ferrous iron tran 90.7 0.16 5.6E-06 46.6 3.8 23 15-37 7-29 (188)
497 2ce2_X GTPase HRAS; signaling 90.6 0.14 4.7E-06 45.7 3.2 21 17-37 5-25 (166)
498 1z2a_A RAS-related protein RAB 90.6 0.18 6.3E-06 45.1 4.0 23 15-37 5-27 (168)
499 1fzq_A ADP-ribosylation factor 90.5 0.18 6E-06 46.2 3.8 25 13-37 14-38 (181)
500 3sop_A Neuronal-specific septi 90.5 0.14 4.8E-06 50.3 3.2 22 17-38 4-25 (270)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=5.4e-40 Score=366.74 Aligned_cols=291 Identities=16% Similarity=0.124 Sum_probs=229.1
Q ss_pred hhhhHhHhcC-CCCeEEEEEEccCCCcHHHHHHHHHH----HhhccccceEEEEechhhhcc--cChHHHHHHHHHHHhc
Q 003802 2 EKMNGYLEAG-LDDVRFIGICGMGGIGKTTLAKVLYN----TLKDQFEASSFLANVREVSVT--RGLVPLQEQLLSEVLM 74 (794)
Q Consensus 2 ~~l~~~l~~~-~~~~~vi~i~G~~GvGKTtLa~~v~~----~~~~~f~~~~~~~~~~~~~~~--~~~~~~~~~i~~~~~~ 74 (794)
++|.++|... .++.++|+|+||||+||||||+++|+ +++++|+.++|++ ++.. .+...++.+++.++..
T Consensus 138 ~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~----vs~~~~~~~~~~~~~il~~l~~ 213 (549)
T 2a5y_B 138 DRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLK----DSGTAPKSTFDLFTDILLMLKS 213 (549)
T ss_dssp HHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEE----CCCCSTTHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEE----ECCCCCCCHHHHHHHHHHHHhc
Confidence 5677777654 44689999999999999999999996 6889999999997 4443 3677889999998765
Q ss_pred ccc-ccc-----cchhhhHHHHHHHhcCC-eEEEEEcCCCChHHHHHHhcCCCCCCCCCEEEEEeCChhhhhhcC-cCcE
Q 003802 75 ERD-LII-----WDVHKGINLIRWRLCRK-RVLVILDDVDQLEQLQALVGNHDWFGFGSRIIITSRDEHVLKSHG-VTNT 146 (794)
Q Consensus 75 ~~~-~~~-----~~~~~~~~~l~~~l~~~-r~LlVlDd~~~~~~~~~l~~~~~~~~~gs~IlvTtR~~~v~~~~~-~~~~ 146 (794)
... ... .+.+.....+++.++++ ||||||||+|+.+++ .+.. .+||+||||||++.++..++ ....
T Consensus 214 ~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~~-----~~gs~ilvTTR~~~v~~~~~~~~~~ 287 (549)
T 2a5y_B 214 EDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWAQ-----ELRLRCLVTTRDVEISNAASQTCEF 287 (549)
T ss_dssp TSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHHH-----HTTCEEEEEESBGGGGGGCCSCEEE
T ss_pred CcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-cccc-----cCCCEEEEEcCCHHHHHHcCCCCeE
Confidence 422 111 22344578899999996 999999999998865 2221 26999999999999988776 3457
Q ss_pred EEcCCCChHhHHHHHHhhccCCCCCChhHHHHHHHHHHHhCCCchHHHHHhhhhcCCChHHHHHHHH-HHHcCCChhHHH
Q 003802 147 YKVRGLDYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIEVLGSFLCGRSVEEWKSALN-RLQEAPNEKVLK 225 (794)
Q Consensus 147 ~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~a~~L~~~~~~~w~~~l~-~l~~~~~~~~~~ 225 (794)
+++++|++++||+||.+++++... .+...+++++|+++|+|+||||+++|+.++.+.. +|...+. .++......+..
T Consensus 288 ~~l~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~w-~~~~~l~~~l~~~~~~~i~~ 365 (549)
T 2a5y_B 288 IEVTSLEIDECYDFLEAYGMPMPV-GEKEEDVLNKTIELSSGNPATLMMFFKSCEPKTF-EKMAQLNNKLESRGLVGVEC 365 (549)
T ss_dssp EECCCCCHHHHHHHHHHTSCCCC---CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSSH-HHHHHHHHHHHHHCSSTTCC
T ss_pred EECCCCCHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHHhCCChHHHHHHHHHhccchH-HHHHHhHHHhhcccHHHHHH
Confidence 999999999999999999876532 3567789999999999999999999999987643 2323232 233324566888
Q ss_pred HHHhhccCCChhhHhhhh-----------hhcccccCCCHHHHHHhhhhc--CCCch-----------hhHHHHhhcccc
Q 003802 226 VLRISYDGLDRRDKEIFL-----------DIACFFKGKDEDRVRKKLDSC--GFNSD-----------IGIRELLDKSLI 281 (794)
Q Consensus 226 ~l~~sy~~L~~~~~~~~~-----------~~s~fp~~~~~~~l~~~~~~~--g~~~~-----------~~l~~L~~~~ll 281 (794)
++.+||+.||++.+.||. |||+||+++.++ +..|+++ |++.. .++++|++++|+
T Consensus 366 ~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~--i~~w~a~~~G~i~~~~~~~~~~~~~~~l~~L~~rsLl 443 (549)
T 2a5y_B 366 ITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP--VKLWSCVIPVDICSNEEEQLDDEVADRLKRLSKRGAL 443 (549)
T ss_dssp CSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE--HHHHHHHSCC-------CCCTHHHHHHHHHTTTBSSC
T ss_pred HHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee--eeeeeeeccceeccCCCCCCHHHHHHHHHHHHHcCCe
Confidence 899999999999999999 999999999887 7899999 77642 269999999999
Q ss_pred eeec----CeehHHHHHHHHHHHHHhhhC
Q 003802 282 TIVN----NKLWMHDLLQEMGWEIVREHH 306 (794)
Q Consensus 282 ~~~~----~~~~mh~li~~~~~~~~~~~~ 306 (794)
+... .+|+|||++|++++.++..++
T Consensus 444 ~~~~~~~~~~~~mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 444 LSGKRMPVLTFKIDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp SEEECSSSCEEECCHHHHHHHHTTSCTHH
T ss_pred eEecCCCceEEEeChHHHHHHHHHHHHHH
Confidence 8862 369999999999998776654
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=5.1e-35 Score=342.03 Aligned_cols=415 Identities=20% Similarity=0.169 Sum_probs=285.5
Q ss_pred CeEEEEEecCCcccccchhhhccCCCCcEEEEcCcccCCCccc-cccCcceeeeecCCCC-CCCCCC-C-CCCceEEEcC
Q 003802 333 DAVEAIIVDVPEMTELEAKSFSTMSNLRLLEINNLYSSGNLEY-LSNNLRYLKWHEYPFN-SLPVSF-R-PEKLFKLNLC 408 (794)
Q Consensus 333 ~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~l~~L~~~~~~~~-~l~~~~-~-~~~L~~L~L~ 408 (794)
..++.+.++.|.+....+..|.++++|++|++++|.+.+..+. .+.+|+.|++.++.+. .+|..+ . +++|++|+++
T Consensus 223 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls 302 (768)
T 3rgz_A 223 SALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLS 302 (768)
T ss_dssp CSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECC
T ss_pred CCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECc
Confidence 4455555555555544455555555555555555555443332 2334555555555444 444444 2 3667777777
Q ss_pred CCCcc-cccccccccccCceeccCCCcCccCCCC--CCCCCCCCEEecccccccccccccccCcc-cccccccccccccc
Q 003802 409 NSRIK-YLWKGIKPLKELKFMNLSHSCNLIRTPD--FTGVPNLERLNLEGCTRLLEVHQSVGTLK-RLILLNLKDCRNLV 484 (794)
Q Consensus 409 ~n~i~-~l~~~~~~l~~L~~L~L~~n~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~n~~~~ 484 (794)
+|.++ .+|..+.++++|++|++++|.+....|. +..+++|++|++++|.+.+.+|..+..++ +|++|++++|.+.+
T Consensus 303 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~ 382 (768)
T 3rgz_A 303 GNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSG 382 (768)
T ss_dssp SSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEE
T ss_pred CCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCC
Confidence 77766 4566677777777777777766644442 66777777777777777667777777776 77777777777777
Q ss_pred ccccccCC--CCCccEEEecCCCCCCCCCccccCCCCCcEEEccCccCc-ccCcccccCCCCCEEEcCCCC--CCCCccc
Q 003802 485 SFPKNVCL--MKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIR-QIPPSIVQLVNLKIFSLHGCK--GQPPKIL 559 (794)
Q Consensus 485 ~~~~~~~~--l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~l~~l~~L~~L~l~~~~--~~~~~~~ 559 (794)
.+|..+.. +++|++|++++|.+.+.+|..+.++++|+.|++++|.++ .+|..+..+++|+.|++++|. +..|..+
T Consensus 383 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~ 462 (768)
T 3rgz_A 383 PILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQEL 462 (768)
T ss_dssp ECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGG
T ss_pred CcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHH
Confidence 77766666 778888888888888888888999999999999999888 778888999999999999988 4566666
Q ss_pred cccchhccccCCCCCCCccccCCCCCCCCCCCEEecCCCCCccCCCCccccCCCCCCeEeCCCCCCc-cCchhhhccCCC
Q 003802 560 SSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFF-SLPSSINQLLKL 638 (794)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L 638 (794)
.....+..+.+..+...... ...+..+++|+.|++++|. +++.+|.+++.+++|++|+|++|+++ .+|..++.+++|
T Consensus 463 ~~l~~L~~L~L~~N~l~~~~-p~~l~~l~~L~~L~L~~N~-l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L 540 (768)
T 3rgz_A 463 MYVKTLETLILDFNDLTGEI-PSGLSNCTNLNWISLSNNR-LTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSL 540 (768)
T ss_dssp GGCTTCCEEECCSSCCCSCC-CGGGGGCTTCCEEECCSSC-CCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTC
T ss_pred cCCCCceEEEecCCcccCcC-CHHHhcCCCCCEEEccCCc-cCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCC
Confidence 66666666666666554322 2347889999999999999 67789999999999999999999998 889899999999
Q ss_pred CEEecCCCcCCCCCCCCCcc---ccc------------------------------------------------------
Q 003802 639 KILCLEKCRNLKSLPELPPE---IVF------------------------------------------------------ 661 (794)
Q Consensus 639 ~~L~L~~n~~~~~~~~~~~~---L~~------------------------------------------------------ 661 (794)
+.|++++|++.+.+|..... +..
T Consensus 541 ~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~ 620 (768)
T 3rgz_A 541 IWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVY 620 (768)
T ss_dssp CEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEE
T ss_pred CEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhcccccccccccccee
Confidence 99999999987776631100 000
Q ss_pred -----cccccccccccccccccccCCCCceEEEeCCCCchhhhhhhhhHHHHHHHHHHhhhccccccCcccccccccccc
Q 003802 662 -----VGAEDCTSLETISAFAKLSRSPNIALNFLNCFKLVEDQVSKDNLAVTLMKQWLLSYHSLVAWTDSTRRFNVNYYG 736 (794)
Q Consensus 662 -----L~l~~~~~L~~l~~~~n~~~~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 736 (794)
-.+.++++|+.|++++| ...+.++..+.++++|+.|++++|.+++.++.. +..+..+..++.+.+.+.-.
T Consensus 621 ~g~~~~~~~~l~~L~~LdLs~N-~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~-l~~L~~L~~LdLs~N~l~g~--- 695 (768)
T 3rgz_A 621 GGHTSPTFDNNGSMMFLDMSYN-MLSGYIPKEIGSMPYLFILNLGHNDISGSIPDE-VGDLRGLNILDLSSNKLDGR--- 695 (768)
T ss_dssp EEECCCSCSSSBCCCEEECCSS-CCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGG-GGGCTTCCEEECCSSCCEEC---
T ss_pred cccCchhhhccccccEEECcCC-cccccCCHHHhccccCCEEeCcCCccCCCCChH-HhCCCCCCEEECCCCcccCc---
Confidence 01334577888888877 556667777888888888888888887666433 34556666666655544311
Q ss_pred ceeeccCCCcccccCccce
Q 003802 737 EKTIINSASPSLVSQPLSL 755 (794)
Q Consensus 737 ~~~~~~~~~~~l~~~~l~~ 755 (794)
........+.++.+.+++
T Consensus 696 -ip~~l~~l~~L~~L~ls~ 713 (768)
T 3rgz_A 696 -IPQAMSALTMLTEIDLSN 713 (768)
T ss_dssp -CCGGGGGCCCCSEEECCS
T ss_pred -CChHHhCCCCCCEEECcC
Confidence 111113334566666666
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=4.7e-34 Score=333.88 Aligned_cols=367 Identities=21% Similarity=0.195 Sum_probs=263.6
Q ss_pred CCeEEEEEecCCcccccchhhhc-cCCCCcEEEEcCcccCCCcccccc---CcceeeeecCCCC-CCCCC-C-CCCCceE
Q 003802 332 TDAVEAIIVDVPEMTELEAKSFS-TMSNLRLLEINNLYSSGNLEYLSN---NLRYLKWHEYPFN-SLPVS-F-RPEKLFK 404 (794)
Q Consensus 332 ~~~~~~l~l~~~~~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~---~l~~L~~~~~~~~-~l~~~-~-~~~~L~~ 404 (794)
...++.+.+..|.+....+..+. .+++|++|++++|.+.+..|..+. +|+.|++.++.+. .+|.. + .+++|++
T Consensus 268 l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~ 347 (768)
T 3rgz_A 268 LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKV 347 (768)
T ss_dssp CTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCE
T ss_pred cCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCE
Confidence 34556666666655533333333 347777777777777666665544 3444444444443 34432 2 5667777
Q ss_pred EEcCCCCcc-cccccccccc-cCceeccCCCcCccCCCC-CCC--CCCCCEEecccccccccccccccCccccccccccc
Q 003802 405 LNLCNSRIK-YLWKGIKPLK-ELKFMNLSHSCNLIRTPD-FTG--VPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKD 479 (794)
Q Consensus 405 L~L~~n~i~-~l~~~~~~l~-~L~~L~L~~n~~~~~~~~-~~~--l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 479 (794)
|++++|.++ .+|..+..++ +|++|++++|.+....+. +.. +++|++|++++|.+.+.+|..+.++++|++|++++
T Consensus 348 L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~ 427 (768)
T 3rgz_A 348 LDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSF 427 (768)
T ss_dssp EECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCS
T ss_pred EeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcC
Confidence 777777776 6677777666 777777777776655443 444 67788888888888778888888888888888888
Q ss_pred cccccccccccCCCCCccEEEecCCCCCCCCCccccCCCCCcEEEccCccCc-ccCcccccCCCCCEEEcCCCC--CCCC
Q 003802 480 CRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIR-QIPPSIVQLVNLKIFSLHGCK--GQPP 556 (794)
Q Consensus 480 n~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~l~~l~~L~~L~l~~~~--~~~~ 556 (794)
|.+.+.+|..++.+++|++|++++|.+.+.+|..+..+++|+.|++++|.++ .+|..+.++++|+.|++++|. +..|
T Consensus 428 N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p 507 (768)
T 3rgz_A 428 NYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIP 507 (768)
T ss_dssp SEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCC
T ss_pred CcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCC
Confidence 8887788888888888888888888888888888888888888888888887 677788888888888888887 3566
Q ss_pred ccccccchhccccCCCCCCCccccCCCCCCCCCCCEEecCCCCCccCCCCc-----------------------------
Q 003802 557 KILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPS----------------------------- 607 (794)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~----------------------------- 607 (794)
..+.....+..+.+..|...+.. ...+..+++|+.|++++|. +.+.+|.
T Consensus 508 ~~~~~l~~L~~L~L~~N~l~~~~-p~~l~~l~~L~~L~Ls~N~-l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 585 (768)
T 3rgz_A 508 KWIGRLENLAILKLSNNSFSGNI-PAELGDCRSLIWLDLNTNL-FNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKK 585 (768)
T ss_dssp GGGGGCTTCCEEECCSSCCEEEC-CGGGGGCTTCCEEECCSSE-EESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCT
T ss_pred hHHhcCCCCCEEECCCCcccCcC-CHHHcCCCCCCEEECCCCc-cCCcCChHHhcccchhhhhccccccccccccccccc
Confidence 66666555555556655554322 1347778888888888887 4444443
Q ss_pred -----------------------------------------cccCCCCCCeEeCCCCCCc-cCchhhhccCCCCEEecCC
Q 003802 608 -----------------------------------------DIGSLFSLEAIDLSGNNFF-SLPSSINQLLKLKILCLEK 645 (794)
Q Consensus 608 -----------------------------------------~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~ 645 (794)
.++.+++|+.|+|++|+++ .+|..++++++|+.|+|++
T Consensus 586 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~ 665 (768)
T 3rgz_A 586 ECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGH 665 (768)
T ss_dssp TCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCS
T ss_pred cccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcC
Confidence 2344577888889888888 7888888888899999998
Q ss_pred CcCCCCCCCCCccccccccccccccccccccccccCCCCceEEEeCCCCchhhhhhhhhHHHHH
Q 003802 646 CRNLKSLPELPPEIVFVGAEDCTSLETISAFAKLSRSPNIALNFLNCFKLVEDQVSKDNLAVTL 709 (794)
Q Consensus 646 n~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~n~~~~~~~~~~~~~~~~L~~L~l~~N~l~~~~ 709 (794)
|.+.+.+|. .+.++++|+.|+++.| ...+.+|..+.++++|++|++++|+++|.+
T Consensus 666 N~l~g~ip~--------~l~~L~~L~~LdLs~N-~l~g~ip~~l~~l~~L~~L~ls~N~l~g~i 720 (768)
T 3rgz_A 666 NDISGSIPD--------EVGDLRGLNILDLSSN-KLDGRIPQAMSALTMLTEIDLSNNNLSGPI 720 (768)
T ss_dssp SCCCSCCCG--------GGGGCTTCCEEECCSS-CCEECCCGGGGGCCCCSEEECCSSEEEEEC
T ss_pred CccCCCCCh--------HHhCCCCCCEEECCCC-cccCcCChHHhCCCCCCEEECcCCcccccC
Confidence 888777775 4577788888888887 566667777888888999999998887644
No 4
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=2.5e-33 Score=314.38 Aligned_cols=269 Identities=16% Similarity=0.156 Sum_probs=205.6
Q ss_pred hhhhHhHhcCCCCeEEEEEEccCCCcHHHHHHHHHH--Hhhccccc-eEEEEechhhhcccChHHHHHHHHHHHhccc--
Q 003802 2 EKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYN--TLKDQFEA-SSFLANVREVSVTRGLVPLQEQLLSEVLMER-- 76 (794)
Q Consensus 2 ~~l~~~l~~~~~~~~vi~i~G~~GvGKTtLa~~v~~--~~~~~f~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-- 76 (794)
++|.++|... ++.++|+|+||||+||||||+++|+ +++.+|+. ++|++ ++...+...+...+...+....
T Consensus 138 eeL~elL~~~-d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVs----Vs~~~d~~~IL~~Ll~lL~~i~~~ 212 (1221)
T 1vt4_I 138 LKLRQALLEL-RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN----LKNCNSPETVLEMLQKLLYQIDPN 212 (1221)
T ss_dssp HHHHHHHHHC-CSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEE----CCCSSSHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHhcc-CCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEE----eCCCCCHHHHHHHHHHHHhhcCcc
Confidence 4566667653 3478999999999999999999997 57889997 78887 4555566666666665432211
Q ss_pred -c-------ccccchhhhHHHHHHHh---cCCeEEEEEcCCCChHHHHHHhcCCCCCCCCCEEEEEeCChhhhhhcCcCc
Q 003802 77 -D-------LIIWDVHKGINLIRWRL---CRKRVLVILDDVDQLEQLQALVGNHDWFGFGSRIIITSRDEHVLKSHGVTN 145 (794)
Q Consensus 77 -~-------~~~~~~~~~~~~l~~~l---~~~r~LlVlDd~~~~~~~~~l~~~~~~~~~gs~IlvTtR~~~v~~~~~~~~ 145 (794)
. ....+.+...+.+++.+ .++|+||||||+|+.+.|+.+. +||+||||||++.++..+....
T Consensus 213 ~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~-------pGSRILVTTRd~~Va~~l~g~~ 285 (1221)
T 1vt4_I 213 WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-------LSCKILLTTRFKQVTDFLSAAT 285 (1221)
T ss_dssp STTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH-------SSCCEEEECSCSHHHHHHHHHS
T ss_pred cccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC-------CCeEEEEeccChHHHHhcCCCe
Confidence 0 01123344556666655 6899999999999999998863 5899999999999886544333
Q ss_pred EEEcC------CCChHhHHHHHHhhccCCCCCChhHHHHHHHHHHHhCCCchHHHHHhhhhcCC--ChHHHHHHHHHHHc
Q 003802 146 TYKVR------GLDYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIEVLGSFLCGR--SVEEWKSALNRLQE 217 (794)
Q Consensus 146 ~~~l~------~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~a~~L~~~--~~~~w~~~l~~l~~ 217 (794)
.++++ +|+++||++||.+... .. . .+...+ .|+|+|+||+++|+.|+.+ ...+|+..
T Consensus 286 vy~LeL~d~dL~LS~eEA~eLF~~~~g-~~-~----eeL~~e---ICgGLPLALkLaGs~Lr~k~~s~eeW~~~------ 350 (1221)
T 1vt4_I 286 TTHISLDHHSMTLTPDEVKSLLLKYLD-CR-P----QDLPRE---VLTTNPRRLSIIAESIRDGLATWDNWKHV------ 350 (1221)
T ss_dssp SCEEEECSSSSCCCHHHHHHHHHHHHC-CC-T----TTHHHH---HCCCCHHHHHHHHHHHHHSCSSHHHHHHC------
T ss_pred EEEecCccccCCcCHHHHHHHHHHHcC-CC-H----HHHHHH---HhCCCHHHHHHHHHHHhCCCCCHHHHhcC------
Confidence 45555 8999999999999852 21 1 122333 3999999999999999875 67788653
Q ss_pred CCChhHHHHHHhhccCCChhh-HhhhhhhcccccCCCH--HHHHHhhhhcCC-CchhhHHHHhhcccceee--cCeehHH
Q 003802 218 APNEKVLKVLRISYDGLDRRD-KEIFLDIACFFKGKDE--DRVRKKLDSCGF-NSDIGIRELLDKSLITIV--NNKLWMH 291 (794)
Q Consensus 218 ~~~~~~~~~l~~sy~~L~~~~-~~~~~~~s~fp~~~~~--~~l~~~~~~~g~-~~~~~l~~L~~~~ll~~~--~~~~~mh 291 (794)
....+..++..||+.||++. |.||+|||+||+++.+ +.+..+|.++|. ..+.++++|++++|++.. .++|+||
T Consensus 351 -~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeGeedAe~~L~eLvdRSLLq~d~~~~rYrMH 429 (1221)
T 1vt4_I 351 -NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP 429 (1221)
T ss_dssp -SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCSHHHHHHHHHHHTSSSSSBCSSSSEEBCC
T ss_pred -ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHHHHhhCCEEEeCCCCEEEeh
Confidence 35789999999999999999 9999999999998755 668899998863 235679999999999986 4689999
Q ss_pred HHHHHHH
Q 003802 292 DLLQEMG 298 (794)
Q Consensus 292 ~li~~~~ 298 (794)
+++++++
T Consensus 430 DLllELr 436 (1221)
T 1vt4_I 430 SIYLELK 436 (1221)
T ss_dssp CHHHHHH
T ss_pred HHHHHHh
Confidence 9988754
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.2e-32 Score=315.18 Aligned_cols=373 Identities=18% Similarity=0.141 Sum_probs=262.5
Q ss_pred CeEEEEEecCCcccccchhhhccCCCCcEEEEcCcccCCCcccccc---CcceeeeecCCCCCC-CCCC-CCCCceEEEc
Q 003802 333 DAVEAIIVDVPEMTELEAKSFSTMSNLRLLEINNLYSSGNLEYLSN---NLRYLKWHEYPFNSL-PVSF-RPEKLFKLNL 407 (794)
Q Consensus 333 ~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~---~l~~L~~~~~~~~~l-~~~~-~~~~L~~L~L 407 (794)
+.++.++++.|.+..+.+..|.++++|++|++++|.+.+..+..+. +|+.|++.++.+..+ |..+ .+++|++|++
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 112 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF 112 (606)
T ss_dssp TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEEC
T ss_pred CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeec
Confidence 4678999999999999999999999999999999999887776655 566666666666555 3344 7889999999
Q ss_pred CCCCcccc-cccccccccCceeccCCCcCccC-CCCCCCCCCCCEEecccccccccccccccCccccc--cccccccccc
Q 003802 408 CNSRIKYL-WKGIKPLKELKFMNLSHSCNLIR-TPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLI--LLNLKDCRNL 483 (794)
Q Consensus 408 ~~n~i~~l-~~~~~~l~~L~~L~L~~n~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~--~L~l~~n~~~ 483 (794)
++|.++.+ +..+.++++|++|++++|.+... .+.+..+++|++|++++|.+.+..|..++.+++|+ .|++++|.+.
T Consensus 113 ~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~ 192 (606)
T 3t6q_A 113 IQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA 192 (606)
T ss_dssp TTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCC
T ss_pred cccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccC
Confidence 99999988 56699999999999999988874 35566799999999999998887788889999998 8889988876
Q ss_pred cccccccCCC---------------------------------------------------CCccEEEecCCCCCCCCCc
Q 003802 484 VSFPKNVCLM---------------------------------------------------KSLKILCLCGCLKLEKLPQ 512 (794)
Q Consensus 484 ~~~~~~~~~l---------------------------------------------------~~L~~L~L~~~~~~~~~~~ 512 (794)
+..|..+... .+|+.|++++|.+.+..+.
T Consensus 193 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~ 272 (606)
T 3t6q_A 193 GIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSN 272 (606)
T ss_dssp EECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTT
T ss_pred ccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHH
Confidence 6555443221 1567777777777776666
Q ss_pred cccCCCCCcEEEccCccCcccCcccccCCCCCEEEcCCCCCC--CCccccccchhccccCCCCCCCccccCCCCCCCCCC
Q 003802 513 DLGEVECLEELDVGGTAIRQIPPSIVQLVNLKIFSLHGCKGQ--PPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSL 590 (794)
Q Consensus 513 ~~~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 590 (794)
.|+.+++|++|++++|.++.+|..+..+++|++|++++|... .+..+.....+..+.+..+..........+..+++|
T Consensus 273 ~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L 352 (606)
T 3t6q_A 273 TFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENL 352 (606)
T ss_dssp TTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTC
T ss_pred HhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcC
Confidence 788888888888888888888888888888888888888732 233444444444444444444433333446777788
Q ss_pred CEEecCCCCCccCCC--CccccCCCCCCeEeCCCCCCccC-chhhhccCCCCEEecCCCcCCCCCCCC----Cccccccc
Q 003802 591 QTLDLSDCNLLEGAI--PSDIGSLFSLEAIDLSGNNFFSL-PSSINQLLKLKILCLEKCRNLKSLPEL----PPEIVFVG 663 (794)
Q Consensus 591 ~~L~l~~n~~~~~~~--~~~~~~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~L~~n~~~~~~~~~----~~~L~~L~ 663 (794)
++|++++|.+ ++.. +..+..+++|++|++++|.++.+ |..+..+++|++|++++|+.....+.. .++|+.|+
T Consensus 353 ~~L~l~~n~l-~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 431 (606)
T 3t6q_A 353 RELDLSHDDI-ETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLN 431 (606)
T ss_dssp CEEECCSSCC-CEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEE
T ss_pred CEEECCCCcc-ccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEE
Confidence 8888887773 3222 55677777778888877777743 556677777777777777755443221 12333333
Q ss_pred c-------------ccccccccccccccccCCC--CceEEEeCCCCchhhhhhhhhHH
Q 003802 664 A-------------EDCTSLETISAFAKLSRSP--NIALNFLNCFKLVEDQVSKDNLA 706 (794)
Q Consensus 664 l-------------~~~~~L~~l~~~~n~~~~~--~~~~~~~~~~~L~~L~l~~N~l~ 706 (794)
+ .++++|+.|++++|..... .....+.++++|++|++++|.++
T Consensus 432 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~ 489 (606)
T 3t6q_A 432 LSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLS 489 (606)
T ss_dssp CTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCC
T ss_pred CCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccC
Confidence 3 2345555555555521110 01123455666666666666554
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=4.1e-32 Score=310.63 Aligned_cols=317 Identities=19% Similarity=0.150 Sum_probs=179.6
Q ss_pred CCCeEEEEEecCCcccccchhhhccCCCCcEEEEcCcccCCCccccc---cCcceeeeecCCCCCC--CCCCCCCCceEE
Q 003802 331 GTDAVEAIIVDVPEMTELEAKSFSTMSNLRLLEINNLYSSGNLEYLS---NNLRYLKWHEYPFNSL--PVSFRPEKLFKL 405 (794)
Q Consensus 331 ~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~---~~l~~L~~~~~~~~~l--~~~~~~~~L~~L 405 (794)
....++.+.++.|.+..+.+..|.++++|++|++++|.+.+..+..+ .+|+.|++.++.+..+ +..+.+++|++|
T Consensus 79 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 158 (606)
T 3t6q_A 79 SQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVL 158 (606)
T ss_dssp TCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEE
T ss_pred CccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEE
Confidence 45667777777777777777777888888888888877776444333 4566666666666655 444567788888
Q ss_pred EcCCCCcccc-cccccccccCc--eeccCCCcCccCCCCCCCCC------------------------------------
Q 003802 406 NLCNSRIKYL-WKGIKPLKELK--FMNLSHSCNLIRTPDFTGVP------------------------------------ 446 (794)
Q Consensus 406 ~L~~n~i~~l-~~~~~~l~~L~--~L~L~~n~~~~~~~~~~~l~------------------------------------ 446 (794)
++++|.++.+ |..+..+++|+ .|++++|.+....+......
T Consensus 159 ~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~ 238 (606)
T 3t6q_A 159 DFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDM 238 (606)
T ss_dssp ECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTS
T ss_pred EcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccc
Confidence 8888888766 34467777777 67777776655444311111
Q ss_pred ----------------CCCEEecccccccccccccccCccccccccccccccccccccccCCCCCccEEEecCCCCCCCC
Q 003802 447 ----------------NLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKL 510 (794)
Q Consensus 447 ----------------~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~ 510 (794)
+|+.|++++|.+.+..+..+..+++|++|++++|.+. .+|..+..+++|++|++++|.+.+..
T Consensus 239 ~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~ 317 (606)
T 3t6q_A 239 DDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLC 317 (606)
T ss_dssp CCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGG
T ss_pred cccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCc
Confidence 3444444444444444444556666666666665533 55555666666666666666665555
Q ss_pred CccccCCCCCcEEEccCccCc-ccCcc-cccCCCCCEEEcCCCCCCC----CccccccchhccccCCCCCCCccccCCCC
Q 003802 511 PQDLGEVECLEELDVGGTAIR-QIPPS-IVQLVNLKIFSLHGCKGQP----PKILSSNFFLSLLLPNKNSDSMCLSFPRF 584 (794)
Q Consensus 511 ~~~~~~l~~L~~L~l~~~~l~-~l~~~-l~~l~~L~~L~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 584 (794)
|..+..+++|++|++++|.+. .+|.. +..+++|++|++++|.... +..+.....+..+.+..+... ......+
T Consensus 318 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~ 396 (606)
T 3t6q_A 318 QISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPL-SLKTEAF 396 (606)
T ss_dssp GGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCE-EECTTTT
T ss_pred hhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCC-cCCHHHh
Confidence 555666666666666666554 34332 5556666666666655221 222222233333333333222 1112235
Q ss_pred CCCCCCCEEecCCCCCccCCCCccccCCCCCCeEeCCCCCCcc-CchhhhccCCCCEEecCCCcCC
Q 003802 585 TGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFS-LPSSINQLLKLKILCLEKCRNL 649 (794)
Q Consensus 585 ~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~-lp~~l~~l~~L~~L~L~~n~~~ 649 (794)
..+++|+.|++++|.+.....+..+..+++|++|++++|.++. .|..+..+++|++|++++|++.
T Consensus 397 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 462 (606)
T 3t6q_A 397 KECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFP 462 (606)
T ss_dssp TTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCG
T ss_pred cCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCC
Confidence 5556666666666652221122335556666666666665553 3444555666666666666543
No 7
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.98 E-value=5.5e-33 Score=317.12 Aligned_cols=312 Identities=17% Similarity=0.195 Sum_probs=215.4
Q ss_pred CeEEEEEecCCcccccchhhhccCCCCcEEEEcCccc------CC---------------------------Ccccccc-
Q 003802 333 DAVEAIIVDVPEMTELEAKSFSTMSNLRLLEINNLYS------SG---------------------------NLEYLSN- 378 (794)
Q Consensus 333 ~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~------~~---------------------------~~~~~~~- 378 (794)
..++.++++.+.+....+.+++++++|++|++++|.+ .+ ..+..+.
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~ 160 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD 160 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHH
Confidence 5799999999988877778999999999999999965 11 1111110
Q ss_pred --------C-------------cceeee--ecCCCCCCCCCC-CCCCceEEEcCCCCccc------------------cc
Q 003802 379 --------N-------------LRYLKW--HEYPFNSLPVSF-RPEKLFKLNLCNSRIKY------------------LW 416 (794)
Q Consensus 379 --------~-------------l~~L~~--~~~~~~~l~~~~-~~~~L~~L~L~~n~i~~------------------l~ 416 (794)
+ ++.+.+ .++.+..+|..+ .+++|++|+|++|.++. +|
T Consensus 161 ~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip 240 (636)
T 4eco_A 161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKT 240 (636)
T ss_dssp HHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT
T ss_pred HHHHHhhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCc
Confidence 0 000000 022233355555 67899999999999987 88
Q ss_pred cccc--ccccCceeccCCCcCccCCCC-CCCCCCCCEEeccccc-ccc-cccccccCc------cccccccccccccccc
Q 003802 417 KGIK--PLKELKFMNLSHSCNLIRTPD-FTGVPNLERLNLEGCT-RLL-EVHQSVGTL------KRLILLNLKDCRNLVS 485 (794)
Q Consensus 417 ~~~~--~l~~L~~L~L~~n~~~~~~~~-~~~l~~L~~L~l~~~~-~~~-~~~~~~~~l------~~L~~L~l~~n~~~~~ 485 (794)
..+. ++++|++|++++|.+....|. +.++++|++|++++|. +.+ .+|..++.+ ++|++|++++|.+. .
T Consensus 241 ~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ 319 (636)
T 4eco_A 241 EDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-T 319 (636)
T ss_dssp SCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-S
T ss_pred hhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-c
Confidence 8888 999999999999988777776 8889999999999987 776 788888776 89999999998876 7
Q ss_pred ccc--ccCCCCCccEEEecCCCCCCCCCccccCCCCCcEEEccCccCcccCcccccCCC-CCEEEcCCCC-CCCCccccc
Q 003802 486 FPK--NVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPPSIVQLVN-LKIFSLHGCK-GQPPKILSS 561 (794)
Q Consensus 486 ~~~--~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~l~~l~~-L~~L~l~~~~-~~~~~~~~~ 561 (794)
+|. .++++++|++|++++|.+.+.+| .++.+++|+.|++++|.++.+|..+..+++ |++|++++|. ...|..+..
T Consensus 320 ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~ 398 (636)
T 4eco_A 320 FPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDA 398 (636)
T ss_dssp CCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCT
T ss_pred cCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccchhhhh
Confidence 888 88899999999999988887888 788888999999999988888888888888 9999998887 344444333
Q ss_pred cc--hhccccCCCCCCCccccCCCCC-------CCCCCCEEecCCCCCccCCCCcc-ccCCCCCCeEeCCCCCCccCchh
Q 003802 562 NF--FLSLLLPNKNSDSMCLSFPRFT-------GLSSLQTLDLSDCNLLEGAIPSD-IGSLFSLEAIDLSGNNFFSLPSS 631 (794)
Q Consensus 562 ~~--~~~~~~~~~~~~~~~~~~~~~~-------~~~~L~~L~l~~n~~~~~~~~~~-~~~l~~L~~L~L~~n~l~~lp~~ 631 (794)
.. .+..+.+..+....... ..+. .+++|+.|++++|.+. . +|.. +..+++|++|+|++|.++.+|..
T Consensus 399 ~~l~~L~~L~Ls~N~l~~~~p-~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~-lp~~~~~~l~~L~~L~Ls~N~l~~i~~~ 475 (636)
T 4eco_A 399 KSVSVMSAIDFSYNEIGSVDG-KNFDPLDPTPFKGINVSSINLSNNQIS-K-FPKELFSTGSPLSSINLMGNMLTEIPKN 475 (636)
T ss_dssp TCSSCEEEEECCSSCTTTTTT-CSSCTTCSSCCCCCCEEEEECCSSCCC-S-CCTHHHHTTCCCSEEECCSSCCSBCCSS
T ss_pred cccCccCEEECcCCcCCCcch-hhhcccccccccCCCCCEEECcCCccC-c-CCHHHHccCCCCCEEECCCCCCCCcCHH
Confidence 32 22333344443332111 1122 4456666666666632 2 3333 33456666666666666655543
Q ss_pred hhc--------cCCCCEEecCCCcCC
Q 003802 632 INQ--------LLKLKILCLEKCRNL 649 (794)
Q Consensus 632 l~~--------l~~L~~L~L~~n~~~ 649 (794)
... +++|+.|+|++|++.
T Consensus 476 ~~~~~~~~~~~l~~L~~L~Ls~N~l~ 501 (636)
T 4eco_A 476 SLKDENENFKNTYLLTSIDLRFNKLT 501 (636)
T ss_dssp SSEETTEECTTGGGCCEEECCSSCCC
T ss_pred HhccccccccccCCccEEECcCCcCC
Confidence 322 125666666666533
No 8
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.98 E-value=2.1e-32 Score=340.35 Aligned_cols=291 Identities=23% Similarity=0.290 Sum_probs=227.4
Q ss_pred hhhhHhHhcCCCCeEEEEEEccCCCcHHHHHHHHHHH---hhccccce-EEEEechhhhcccChHHHHHHHHHHHhcccc
Q 003802 2 EKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNT---LKDQFEAS-SFLANVREVSVTRGLVPLQEQLLSEVLMERD 77 (794)
Q Consensus 2 ~~l~~~l~~~~~~~~vi~i~G~~GvGKTtLa~~v~~~---~~~~f~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 77 (794)
++|.++|....++.++|+|+||||+||||||+++|++ .+.+|... +|+..... ........++.+...+.....
T Consensus 134 ~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~~~~~~~~l~~~~~ 211 (1249)
T 3sfz_A 134 HAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQ--DKSGLLMKLQNLCMRLDQEES 211 (1249)
T ss_dssp HHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSC--CHHHHHHHHHHHHHHHTTTCT
T ss_pred HHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCc--CchHHHHHHHHHHHHhhhhcc
Confidence 5677777666677899999999999999999999985 35556555 57662211 122333445556665443321
Q ss_pred ---ccccchhhhHHHHHHHhcCC--eEEEEEcCCCChHHHHHHhcCCCCCCCCCEEEEEeCChhhhhh-cCcCcEEEcCC
Q 003802 78 ---LIIWDVHKGINLIRWRLCRK--RVLVILDDVDQLEQLQALVGNHDWFGFGSRIIITSRDEHVLKS-HGVTNTYKVRG 151 (794)
Q Consensus 78 ---~~~~~~~~~~~~l~~~l~~~--r~LlVlDd~~~~~~~~~l~~~~~~~~~gs~IlvTtR~~~v~~~-~~~~~~~~l~~ 151 (794)
....+.+...+.++..+.++ |+||||||+|+..+|..+ .+|++||||||++.++.. ++....+++++
T Consensus 212 ~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~~~~~~~~~~~~~~~~~ 284 (1249)
T 3sfz_A 212 FSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKSVTDSVMGPKHVVPVES 284 (1249)
T ss_dssp TCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTTTTTTCCSCBCCEECCS
T ss_pred cccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHHHHHhhcCCceEEEecC
Confidence 22345667778888888877 999999999999877664 578999999999998854 45567899995
Q ss_pred -CChHhHHHHHHhhccCCCCCChhHHHHHHHHHHHhCCCchHHHHHhhhhcCCChHHHHHHHHHHHcCC-----------
Q 003802 152 -LDYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIEVLGSFLCGRSVEEWKSALNRLQEAP----------- 219 (794)
Q Consensus 152 -L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~a~~L~~~~~~~w~~~l~~l~~~~----------- 219 (794)
|+++||+++|...++... +..++.+++|+++|+|+||||+++|++|+.+. ..|+..++.+....
T Consensus 285 ~l~~~~a~~l~~~~~~~~~---~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~~l~~~~~~~~~~~~~~~ 360 (1249)
T 3sfz_A 285 GLGREKGLEILSLFVNMKK---EDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLRQLQNKQFKRIRKSSSYD 360 (1249)
T ss_dssp SCCHHHHHHHHHHHHTSCS---TTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHHHHHSCCCCCSSCTTCTT
T ss_pred CCCHHHHHHHHHHhhCCCh---hhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHHHHHHhhhhhhhcccccccc
Confidence 999999999998874332 23346789999999999999999999998754 46888888876432
Q ss_pred ChhHHHHHHhhccCCChhhHhhhhhhcccccCC--CHHHHHHhhhhcCCCchhhHHHHhhcccceee-cC---eehHHHH
Q 003802 220 NEKVLKVLRISYDGLDRRDKEIFLDIACFFKGK--DEDRVRKKLDSCGFNSDIGIRELLDKSLITIV-NN---KLWMHDL 293 (794)
Q Consensus 220 ~~~~~~~l~~sy~~L~~~~~~~~~~~s~fp~~~--~~~~l~~~~~~~g~~~~~~l~~L~~~~ll~~~-~~---~~~mh~l 293 (794)
.+.+..++.+||+.|+++.|.||.|||+||+++ +.+.++.+|.+++...+.++++|++++|++.. ++ +|+||++
T Consensus 361 ~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~~sl~~~~~~~~~~~~~~h~l 440 (1249)
T 3sfz_A 361 YEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLETEEVEDILQEFVNKSLLFCNRNGKSFCYYLHDL 440 (1249)
T ss_dssp HHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSCEEEESSSSEEEECCHH
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCCHHHHHHHHHHHHhccceEEecCCCceEEEecHH
Confidence 146889999999999999999999999999987 45778999988776667889999999999987 33 4999999
Q ss_pred HHHHHHHHHhhh
Q 003802 294 LQEMGWEIVREH 305 (794)
Q Consensus 294 i~~~~~~~~~~~ 305 (794)
++++++..+.++
T Consensus 441 ~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 441 QVDFLTEKNRSQ 452 (1249)
T ss_dssp HHHHHHHHTGGG
T ss_pred HHHHHHhhhhHH
Confidence 999998876553
No 9
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.97 E-value=8.9e-32 Score=311.37 Aligned_cols=312 Identities=16% Similarity=0.176 Sum_probs=204.9
Q ss_pred CCeEEEEEecCCcccccchhhhccCCCCcEEEE-cCcccCCCccccc---------------------------------
Q 003802 332 TDAVEAIIVDVPEMTELEAKSFSTMSNLRLLEI-NNLYSSGNLEYLS--------------------------------- 377 (794)
Q Consensus 332 ~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l-~~n~~~~~~~~~~--------------------------------- 377 (794)
...+..+.++++.+....+..|+++++|++|+| ++|.+.+..+...
T Consensus 322 ~~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s 401 (876)
T 4ecn_A 322 NGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLS 401 (876)
T ss_dssp TSCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred CCCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhh
Confidence 368999999999998877899999999999999 8886654421110
Q ss_pred ----------------cCcceeeeecCCCCC-------CCCCC-CCCCceEEEcCCCCccc------------------c
Q 003802 378 ----------------NNLRYLKWHEYPFNS-------LPVSF-RPEKLFKLNLCNSRIKY------------------L 415 (794)
Q Consensus 378 ----------------~~l~~L~~~~~~~~~-------l~~~~-~~~~L~~L~L~~n~i~~------------------l 415 (794)
.....+.+.+..+.. +|..+ .+++|++|+|++|.++. +
T Consensus 402 ~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i 481 (876)
T 4ecn_A 402 DLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE 481 (876)
T ss_dssp HHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence 001112222222222 55555 66788888888888887 7
Q ss_pred ccccc--ccccCceeccCCCcCccCCCC-CCCCCCCCEEeccccc-ccc-cccccccCcc-------ccccccccccccc
Q 003802 416 WKGIK--PLKELKFMNLSHSCNLIRTPD-FTGVPNLERLNLEGCT-RLL-EVHQSVGTLK-------RLILLNLKDCRNL 483 (794)
Q Consensus 416 ~~~~~--~l~~L~~L~L~~n~~~~~~~~-~~~l~~L~~L~l~~~~-~~~-~~~~~~~~l~-------~L~~L~l~~n~~~ 483 (794)
|..+. ++++|++|+|++|.+....|. +.++++|++|++++|. +.+ .+|..++.++ +|++|++++|.+.
T Consensus 482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~ 561 (876)
T 4ecn_A 482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE 561 (876)
T ss_dssp TSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC
T ss_pred ChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC
Confidence 87766 888888888888877776665 7888888888888887 666 6777666655 8888888888766
Q ss_pred ccccc--ccCCCCCccEEEecCCCCCCCCCccccCCCCCcEEEccCccCcccCcccccCCC-CCEEEcCCCC-CCCCccc
Q 003802 484 VSFPK--NVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPPSIVQLVN-LKIFSLHGCK-GQPPKIL 559 (794)
Q Consensus 484 ~~~~~--~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~l~~l~~-L~~L~l~~~~-~~~~~~~ 559 (794)
.+|. .++++++|++|++++|.+. .+| .|+.+++|+.|++++|.++.+|..+..+++ |+.|++++|. ..+|..+
T Consensus 562 -~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~ 638 (876)
T 4ecn_A 562 -EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIF 638 (876)
T ss_dssp -BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCC
T ss_pred -ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCchhh
Confidence 7777 7888888888888888776 667 788888888888888888888877888887 8888888887 3344333
Q ss_pred cccch--hccccCCCCCCCcccc-CC-CCC--CCCCCCEEecCCCCCccCCCCccc-cCCCCCCeEeCCCCCCccCchhh
Q 003802 560 SSNFF--LSLLLPNKNSDSMCLS-FP-RFT--GLSSLQTLDLSDCNLLEGAIPSDI-GSLFSLEAIDLSGNNFFSLPSSI 632 (794)
Q Consensus 560 ~~~~~--~~~~~~~~~~~~~~~~-~~-~~~--~~~~L~~L~l~~n~~~~~~~~~~~-~~l~~L~~L~L~~n~l~~lp~~l 632 (794)
..... +..+.+..|....... ++ .+. .+++|+.|++++|.+. .+|..+ ..+++|+.|+|++|.++.+|..+
T Consensus 639 ~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~--~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~ 716 (876)
T 4ecn_A 639 NAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ--KFPTELFATGSPISTIILSNNLMTSIPENS 716 (876)
T ss_dssp CTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC--SCCHHHHHTTCCCSEEECCSCCCSCCCTTS
T ss_pred hccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC--ccCHHHHccCCCCCEEECCCCcCCccChHH
Confidence 33322 3333344443332110 11 111 2335666666666633 244433 35566666666666655555443
Q ss_pred hc--------cCCCCEEecCCCcC
Q 003802 633 NQ--------LLKLKILCLEKCRN 648 (794)
Q Consensus 633 ~~--------l~~L~~L~L~~n~~ 648 (794)
.. +++|+.|+|++|++
T Consensus 717 ~~~~~~~l~nl~~L~~L~Ls~N~L 740 (876)
T 4ecn_A 717 LKPKDGNYKNTYLLTTIDLRFNKL 740 (876)
T ss_dssp SSCTTSCCTTGGGCCEEECCSSCC
T ss_pred hccccccccccCCccEEECCCCCC
Confidence 22 22566666666553
No 10
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.97 E-value=2.3e-32 Score=312.72 Aligned_cols=139 Identities=22% Similarity=0.227 Sum_probs=101.5
Q ss_pred CeEEEEEecCCcccccchhhhccCCCCcEEEEcCcccCCCccccc---cCcceeeeecCCCCCC-CCCC-CCCCceEEEc
Q 003802 333 DAVEAIIVDVPEMTELEAKSFSTMSNLRLLEINNLYSSGNLEYLS---NNLRYLKWHEYPFNSL-PVSF-RPEKLFKLNL 407 (794)
Q Consensus 333 ~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~---~~l~~L~~~~~~~~~l-~~~~-~~~~L~~L~L 407 (794)
+.++.++++.+.+..++...|.++++|++|++++|.+.+..+..+ .+|++|++.++.+..+ |..+ .+++|++|++
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 111 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 111 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEc
Confidence 567788888888888888888888888888888888777666544 4566666666666666 4444 6778888888
Q ss_pred CCCCccccc-ccccccccCceeccCCCcCcc-CCCC-CCCCCCCCEEecccccccccccccccCccc
Q 003802 408 CNSRIKYLW-KGIKPLKELKFMNLSHSCNLI-RTPD-FTGVPNLERLNLEGCTRLLEVHQSVGTLKR 471 (794)
Q Consensus 408 ~~n~i~~l~-~~~~~l~~L~~L~L~~n~~~~-~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~ 471 (794)
++|.++.++ ..+.++++|++|++++|.+.. ..|. +.++++|++|++++|.+.+..|..+..+.+
T Consensus 112 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 178 (606)
T 3vq2_A 112 VETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRE 178 (606)
T ss_dssp TTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHH
T ss_pred cCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhc
Confidence 888888776 558888888888888887765 3344 778888888888888776655555544443
No 11
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.97 E-value=1.2e-31 Score=306.21 Aligned_cols=342 Identities=15% Similarity=0.135 Sum_probs=226.3
Q ss_pred CCeEEEEEecCCccccc-----------------chhhhc--cCCCCcEEEEcCcccCCCccccccCcceeeeecCCCCC
Q 003802 332 TDAVEAIIVDVPEMTEL-----------------EAKSFS--TMSNLRLLEINNLYSSGNLEYLSNNLRYLKWHEYPFNS 392 (794)
Q Consensus 332 ~~~~~~l~l~~~~~~~~-----------------~~~~~~--~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~~~~~~~~ 392 (794)
...++.++++.|.+... .+..+. ++++|++|++++|.+.+.+|..+.+++.|..++.+.+.
T Consensus 205 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 284 (636)
T 4eco_A 205 LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNR 284 (636)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCT
T ss_pred ccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCC
Confidence 45666777777766552 344455 77777777777777777666665544444444333333
Q ss_pred -C-----CCCC-C------CCCceEEEcCCCCcccccc--cccccccCceeccCCCcCccCCCCCCCCCCCCEEeccccc
Q 003802 393 -L-----PVSF-R------PEKLFKLNLCNSRIKYLWK--GIKPLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCT 457 (794)
Q Consensus 393 -l-----~~~~-~------~~~L~~L~L~~n~i~~l~~--~~~~l~~L~~L~L~~n~~~~~~~~~~~l~~L~~L~l~~~~ 457 (794)
+ |..+ . +++|++|++++|.++.+|. .+.++++|++|++++|.+.+..|.+..+++|++|++++|.
T Consensus 285 ~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~ 364 (636)
T 4eco_A 285 GISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQ 364 (636)
T ss_dssp TSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSE
T ss_pred CCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCc
Confidence 2 2222 1 2677777777777777776 6777777777777777666444466667777777777766
Q ss_pred ccccccccccCccc-cccccccccccccccccccCCCC--CccEEEecCCCCCCCCCcccc-------CCCCCcEEEccC
Q 003802 458 RLLEVHQSVGTLKR-LILLNLKDCRNLVSFPKNVCLMK--SLKILCLCGCLKLEKLPQDLG-------EVECLEELDVGG 527 (794)
Q Consensus 458 ~~~~~~~~~~~l~~-L~~L~l~~n~~~~~~~~~~~~l~--~L~~L~L~~~~~~~~~~~~~~-------~l~~L~~L~l~~ 527 (794)
+. .+|..+..+++ |++|++++|.+. .+|..+..++ +|++|++++|.+.+..|..+. .+++|+.|++++
T Consensus 365 l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~ 442 (636)
T 4eco_A 365 IT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSN 442 (636)
T ss_dssp EE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCS
T ss_pred cc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcC
Confidence 55 66666777777 777777776655 6666665544 677777777777776666666 666777777777
Q ss_pred ccCcccCcccc-cCCCCCEEEcCCCCCC-CCccccccchhccccCCCCCCCccccCCCCCCCCCCCEEecCCCCCccCCC
Q 003802 528 TAIRQIPPSIV-QLVNLKIFSLHGCKGQ-PPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAI 605 (794)
Q Consensus 528 ~~l~~l~~~l~-~l~~L~~L~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 605 (794)
|.++.+|..+. .+++|++|++++|... +|..... ...+.+.++++|+.|++++|.+. .+
T Consensus 443 N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~-----------------~~~~~~~~l~~L~~L~Ls~N~l~--~l 503 (636)
T 4eco_A 443 NQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLK-----------------DENENFKNTYLLTSIDLRFNKLT--KL 503 (636)
T ss_dssp SCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSE-----------------ETTEECTTGGGCCEEECCSSCCC--BC
T ss_pred CccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhc-----------------cccccccccCCccEEECcCCcCC--cc
Confidence 77776666543 4677777777776621 1110000 00001233448999999999954 48
Q ss_pred Ccccc--CCCCCCeEeCCCCCCccCchhhhccCCCCEEecCC------CcCCCCCCCCCccccccccccccccccccccc
Q 003802 606 PSDIG--SLFSLEAIDLSGNNFFSLPSSINQLLKLKILCLEK------CRNLKSLPELPPEIVFVGAEDCTSLETISAFA 677 (794)
Q Consensus 606 ~~~~~--~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~------n~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~ 677 (794)
|..+. .+++|+.|+|++|+++.+|..+..+++|+.|+|++ |+..+.+|. .+.+|++|+.|++++
T Consensus 504 p~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~--------~l~~l~~L~~L~Ls~ 575 (636)
T 4eco_A 504 SDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPE--------GITLCPSLTQLQIGS 575 (636)
T ss_dssp CGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCT--------TGGGCSSCCEEECCS
T ss_pred ChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChH--------HHhcCCCCCEEECCC
Confidence 88876 89999999999999999999999999999999954 555555554 346788888888888
Q ss_pred cccCCCCceEEEeCCCCchhhhhhhhhHH
Q 003802 678 KLSRSPNIALNFLNCFKLVEDQVSKDNLA 706 (794)
Q Consensus 678 n~~~~~~~~~~~~~~~~L~~L~l~~N~l~ 706 (794)
|.. ..++..+. ++|+.|++++|++.
T Consensus 576 N~l--~~ip~~~~--~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 576 NDI--RKVNEKIT--PNISVLDIKDNPNI 600 (636)
T ss_dssp SCC--CBCCSCCC--TTCCEEECCSCTTC
T ss_pred CcC--CccCHhHh--CcCCEEECcCCCCc
Confidence 733 33333333 89999999999774
No 12
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.97 E-value=2e-30 Score=300.14 Aligned_cols=343 Identities=14% Similarity=0.105 Sum_probs=270.9
Q ss_pred cCCCeEEEEEecCCcccc------------------cchhh-hccCCCCcEEEEcCcccCCCccccccCcceeeeecCCC
Q 003802 330 MGTDAVEAIIVDVPEMTE------------------LEAKS-FSTMSNLRLLEINNLYSSGNLEYLSNNLRYLKWHEYPF 390 (794)
Q Consensus 330 ~~~~~~~~l~l~~~~~~~------------------~~~~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~~~~~~ 390 (794)
.....++.+.++.|.+.. ++... |.++++|++|++++|.+.+.+|..+.+++.|..++.+.
T Consensus 445 ~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~ 524 (876)
T 4ecn_A 445 QRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIAC 524 (876)
T ss_dssp GGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTT
T ss_pred hcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcC
Confidence 456788999999998877 44332 45999999999999999999998776555555554444
Q ss_pred CC------CCCC--------CCCCCceEEEcCCCCcccccc--cccccccCceeccCCCcCccCCCCCCCCCCCCEEecc
Q 003802 391 NS------LPVS--------FRPEKLFKLNLCNSRIKYLWK--GIKPLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLE 454 (794)
Q Consensus 391 ~~------l~~~--------~~~~~L~~L~L~~n~i~~l~~--~~~~l~~L~~L~L~~n~~~~~~~~~~~l~~L~~L~l~ 454 (794)
+. +|.. ..+++|++|++++|.++.+|. .+.++++|++|+|++|.+. ..|.+..+++|+.|+++
T Consensus 525 N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp~~~~L~~L~~L~Ls 603 (876)
T 4ecn_A 525 NRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLEAFGTNVKLTDLKLD 603 (876)
T ss_dssp CTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCC-BCCCCCTTSEESEEECC
T ss_pred CCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcc-cchhhcCCCcceEEECc
Confidence 44 3321 245699999999999999998 8999999999999999888 55589999999999999
Q ss_pred cccccccccccccCccc-cccccccccccccccccccCCCCC--ccEEEecCCCCCCCCCc---ccc--CCCCCcEEEcc
Q 003802 455 GCTRLLEVHQSVGTLKR-LILLNLKDCRNLVSFPKNVCLMKS--LKILCLCGCLKLEKLPQ---DLG--EVECLEELDVG 526 (794)
Q Consensus 455 ~~~~~~~~~~~~~~l~~-L~~L~l~~n~~~~~~~~~~~~l~~--L~~L~L~~~~~~~~~~~---~~~--~l~~L~~L~l~ 526 (794)
+|.+. .+|..+..+++ |++|++++|.+. .+|..+..++. |+.|++++|.+.+.+|. .+. .+++|+.|+++
T Consensus 604 ~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls 681 (876)
T 4ecn_A 604 YNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLS 681 (876)
T ss_dssp SSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECC
T ss_pred CCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEcc
Confidence 99877 88889999999 999999999866 88888877754 99999999999886653 223 34589999999
Q ss_pred CccCcccCcccc-cCCCCCEEEcCCCCCC-CCccccccchhccccCCCCCCCccccCCCCCCCCCCCEEecCCCCCccCC
Q 003802 527 GTAIRQIPPSIV-QLVNLKIFSLHGCKGQ-PPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGA 604 (794)
Q Consensus 527 ~~~l~~l~~~l~-~l~~L~~L~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 604 (794)
+|.++.+|..+. .+++|+.|++++|... +|..... ...+.+.++++|+.|+|++|.+. .
T Consensus 682 ~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~-----------------~~~~~l~nl~~L~~L~Ls~N~L~--~ 742 (876)
T 4ecn_A 682 YNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLK-----------------PKDGNYKNTYLLTTIDLRFNKLT--S 742 (876)
T ss_dssp SSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSS-----------------CTTSCCTTGGGCCEEECCSSCCC--C
T ss_pred CCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhc-----------------cccccccccCCccEEECCCCCCc--c
Confidence 999999998775 7999999999999732 2211000 00011345569999999999964 4
Q ss_pred CCcccc--CCCCCCeEeCCCCCCccCchhhhccCCCCEEecCC------CcCCCCCCCCCcccccccccccccccccccc
Q 003802 605 IPSDIG--SLFSLEAIDLSGNNFFSLPSSINQLLKLKILCLEK------CRNLKSLPELPPEIVFVGAEDCTSLETISAF 676 (794)
Q Consensus 605 ~~~~~~--~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~------n~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~ 676 (794)
+|..+. .+++|+.|+|++|.++.+|..+..+++|+.|+|++ |.+.+.+|. .+.+|++|+.|+++
T Consensus 743 lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~--------~l~~L~~L~~L~Ls 814 (876)
T 4ecn_A 743 LSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPT--------GITTCPSLIQLQIG 814 (876)
T ss_dssp CCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCT--------TGGGCSSCCEEECC
T ss_pred chHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccChH--------HHhcCCCCCEEECC
Confidence 888887 99999999999999999999999999999999987 544555554 44678899999998
Q ss_pred ccccCCCCceEEEeCCCCchhhhhhhhhHH
Q 003802 677 AKLSRSPNIALNFLNCFKLVEDQVSKDNLA 706 (794)
Q Consensus 677 ~n~~~~~~~~~~~~~~~~L~~L~l~~N~l~ 706 (794)
+|.. ..++..+. ++|+.|++++|++.
T Consensus 815 ~N~L--~~Ip~~l~--~~L~~LdLs~N~l~ 840 (876)
T 4ecn_A 815 SNDI--RKVDEKLT--PQLYILDIADNPNI 840 (876)
T ss_dssp SSCC--CBCCSCCC--SSSCEEECCSCTTC
T ss_pred CCCC--CccCHhhc--CCCCEEECCCCCCC
Confidence 8833 33443333 79999999999874
No 13
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.97 E-value=5.6e-31 Score=301.24 Aligned_cols=361 Identities=18% Similarity=0.095 Sum_probs=225.3
Q ss_pred cCCCeEEEEEecCCcccccchhhhccCCCCcEEEEcCcccCCCcccccc---CcceeeeecCCCCCCC-CCC-CCCCceE
Q 003802 330 MGTDAVEAIIVDVPEMTELEAKSFSTMSNLRLLEINNLYSSGNLEYLSN---NLRYLKWHEYPFNSLP-VSF-RPEKLFK 404 (794)
Q Consensus 330 ~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~---~l~~L~~~~~~~~~l~-~~~-~~~~L~~ 404 (794)
.....++.++++.|.+..+++.+|.++++|++|++++|.+.+..|..+. +|++|++.++.+..++ ..+ .+.+|++
T Consensus 53 ~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 132 (606)
T 3vq2_A 53 SNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKK 132 (606)
T ss_dssp TTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCE
T ss_pred cCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCE
Confidence 4567888899999888888888899999999999999988887676554 5666666677666665 233 6788899
Q ss_pred EEcCCCCcc--cccccccccccCceeccCCCcCccCCCC-CCC---------------------------CCCCCEEecc
Q 003802 405 LNLCNSRIK--YLWKGIKPLKELKFMNLSHSCNLIRTPD-FTG---------------------------VPNLERLNLE 454 (794)
Q Consensus 405 L~L~~n~i~--~l~~~~~~l~~L~~L~L~~n~~~~~~~~-~~~---------------------------l~~L~~L~l~ 454 (794)
|++++|.++ .+|..+.++++|++|++++|.+....+. +.. ..+|+.|+++
T Consensus 133 L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~ 212 (606)
T 3vq2_A 133 LNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLR 212 (606)
T ss_dssp EECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEE
T ss_pred EeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeecc
Confidence 999988887 4678888888888888888876554332 211 1245555555
Q ss_pred ccccc---------------------------------------------------------------------------
Q 003802 455 GCTRL--------------------------------------------------------------------------- 459 (794)
Q Consensus 455 ~~~~~--------------------------------------------------------------------------- 459 (794)
+|.+.
T Consensus 213 ~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l 292 (606)
T 3vq2_A 213 GNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSL 292 (606)
T ss_dssp SCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEE
T ss_pred CCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEe
Confidence 54321
Q ss_pred -----ccccccccCccccccccccccccccccccccCCCCCccEEEecCCCCCCCCCccccCCCCCcEEEccCccCccc-
Q 003802 460 -----LEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQI- 533 (794)
Q Consensus 460 -----~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l- 533 (794)
..+| .+..+++|++|++++|.+ +.+| .+ .+++|++|++++|...+.. .+..+++|+.|++++|.++.+
T Consensus 293 ~~~~~~~l~-~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~ 366 (606)
T 3vq2_A 293 AGVSIKYLE-DVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSG 366 (606)
T ss_dssp ESCCCCCCC-CCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEE
T ss_pred cCccchhhh-hccccccCCEEEcccccC-cccc-cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCc
Confidence 1122 455566788888888876 6777 34 7778888888777555433 456677777777777776644
Q ss_pred --CcccccCCCCCEEEcCCCC-CCCCccccccchhccccCCCCCCCccccCCCCCCCCCCCEEecCCCCCccCCCCcccc
Q 003802 534 --PPSIVQLVNLKIFSLHGCK-GQPPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIG 610 (794)
Q Consensus 534 --~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~ 610 (794)
|..+..+++|++|++++|. ...+..+.....+..+.+..+..........+..+++|+.|++++|. +.+..|..+.
T Consensus 367 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~ 445 (606)
T 3vq2_A 367 CCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTN-TKIDFDGIFL 445 (606)
T ss_dssp ECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSC-CEECCTTTTT
T ss_pred chhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCC-CCccchhhhc
Confidence 5666677777777777766 22233333333333344444433332222346666677777777766 4445566666
Q ss_pred CCCCCCeEeCCCCCCcc--CchhhhccCCCCEEecCCCcCCCCCCCCCccccccccccccccccccccccccCCCCceEE
Q 003802 611 SLFSLEAIDLSGNNFFS--LPSSINQLLKLKILCLEKCRNLKSLPELPPEIVFVGAEDCTSLETISAFAKLSRSPNIALN 688 (794)
Q Consensus 611 ~l~~L~~L~L~~n~l~~--lp~~l~~l~~L~~L~L~~n~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~n~~~~~~~~~~ 688 (794)
.+++|++|++++|.++. +|..++.+++|++|+|++|++.+..|. .+.++++|+.|++++| ......+..
T Consensus 446 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--------~~~~l~~L~~L~Ls~N-~l~~~~~~~ 516 (606)
T 3vq2_A 446 GLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWG--------VFDTLHRLQLLNMSHN-NLLFLDSSH 516 (606)
T ss_dssp TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTT--------TTTTCTTCCEEECCSS-CCSCEEGGG
T ss_pred CCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChh--------hhcccccCCEEECCCC-cCCCcCHHH
Confidence 66667777776666663 455666666666666666665443332 1233444444444444 222223333
Q ss_pred EeCCCCchhhhhhhhhHH
Q 003802 689 FLNCFKLVEDQVSKDNLA 706 (794)
Q Consensus 689 ~~~~~~L~~L~l~~N~l~ 706 (794)
+.++++|++|++++|+++
T Consensus 517 ~~~l~~L~~L~l~~N~l~ 534 (606)
T 3vq2_A 517 YNQLYSLSTLDCSFNRIE 534 (606)
T ss_dssp TTTCTTCCEEECTTSCCC
T ss_pred ccCCCcCCEEECCCCcCc
Confidence 444455555555555443
No 14
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.97 E-value=1.2e-31 Score=300.49 Aligned_cols=367 Identities=17% Similarity=0.112 Sum_probs=217.5
Q ss_pred CeEEEEEecCCcccccchhhhccCCCCcEEEEcCcccCCCccccc---cCcceeeeecCCCCCCCCCCCCCCceEEEcCC
Q 003802 333 DAVEAIIVDVPEMTELEAKSFSTMSNLRLLEINNLYSSGNLEYLS---NNLRYLKWHEYPFNSLPVSFRPEKLFKLNLCN 409 (794)
Q Consensus 333 ~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~---~~l~~L~~~~~~~~~l~~~~~~~~L~~L~L~~ 409 (794)
+.++.++++.|.+..+++..|.++++|++|++++|.+.+..|..+ .+|++|++.++.+..+|.. .+++|++|++++
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~l~~L~~L~L~~ 99 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH-PTVNLKHLDLSF 99 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC-CCCCCSEEECCS
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc-ccCCccEEeccC
Confidence 678899999999999999999999999999999999988777655 4677888888888888777 889999999999
Q ss_pred CCccc--ccccccccccCceeccCCCcCccCCCCCCCCCCC--CEEecccccc--cccccccccC---------------
Q 003802 410 SRIKY--LWKGIKPLKELKFMNLSHSCNLIRTPDFTGVPNL--ERLNLEGCTR--LLEVHQSVGT--------------- 468 (794)
Q Consensus 410 n~i~~--l~~~~~~l~~L~~L~L~~n~~~~~~~~~~~l~~L--~~L~l~~~~~--~~~~~~~~~~--------------- 468 (794)
|.++. +|..+.++++|++|++++|.+.. ..+..+++| ++|++++|.+ .+..|..+..
T Consensus 100 N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~ 177 (520)
T 2z7x_B 100 NAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKE 177 (520)
T ss_dssp SCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSC
T ss_pred CccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcc
Confidence 99986 56789999999999999998765 346667777 9999998877 4555544443
Q ss_pred -----------ccccccccccccc-------cccccccccCCCC---------------------------CccEEEecC
Q 003802 469 -----------LKRLILLNLKDCR-------NLVSFPKNVCLMK---------------------------SLKILCLCG 503 (794)
Q Consensus 469 -----------l~~L~~L~l~~n~-------~~~~~~~~~~~l~---------------------------~L~~L~L~~ 503 (794)
+++|+.|++++|. +.+.+| .++.++ +|++|++++
T Consensus 178 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~ 256 (520)
T 2z7x_B 178 FHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISN 256 (520)
T ss_dssp CCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEE
T ss_pred hhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeec
Confidence 6677777777764 333333 344444 445555555
Q ss_pred CCCCCCCCccc-----cCCCCCcEEEccCccCcccC-cccccC---CCCCEEEcCCCCCCCCccccccchhccccCCCCC
Q 003802 504 CLKLEKLPQDL-----GEVECLEELDVGGTAIRQIP-PSIVQL---VNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNS 574 (794)
Q Consensus 504 ~~~~~~~~~~~-----~~l~~L~~L~l~~~~l~~l~-~~l~~l---~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 574 (794)
|.+.+.+|..+ +++++|+.+++++|.+ .+| ..+..+ .+|+.|++++|.............+..+.+..+.
T Consensus 257 n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~ 335 (520)
T 2z7x_B 257 VKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNL 335 (520)
T ss_dssp EEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSC
T ss_pred ccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECCc
Confidence 55444555554 5555555555555555 444 223222 4455555555542111111111122222222222
Q ss_pred CCccccCCCCCCCCCCCEEecCCCCCccC--CCCccccCCCCCCeEeCCCCCCcc-Cchh-hhccCCCCEEecCCCcCCC
Q 003802 575 DSMCLSFPRFTGLSSLQTLDLSDCNLLEG--AIPSDIGSLFSLEAIDLSGNNFFS-LPSS-INQLLKLKILCLEKCRNLK 650 (794)
Q Consensus 575 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~--~~~~~~~~l~~L~~L~L~~n~l~~-lp~~-l~~l~~L~~L~L~~n~~~~ 650 (794)
... .....+..+++|+.|++++|.+ ++ .+|..++.+++|++|++++|.++. +|.. +..+++|+.|++++|++.+
T Consensus 336 l~~-~~~~~~~~l~~L~~L~L~~N~l-~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~ 413 (520)
T 2z7x_B 336 LTD-TVFENCGHLTELETLILQMNQL-KELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTD 413 (520)
T ss_dssp CCT-TTTTTCCCCSSCCEEECCSSCC-CBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCG
T ss_pred cCh-hhhhhhccCCCCCEEEccCCcc-CccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCc
Confidence 221 1112345555566666665552 22 233445555566666666665554 5543 4455555555555555443
Q ss_pred CCCC-CCcccccccccc------------ccccccccccccccCCCCceEEEeCCCCchhhhhhhhhHHH
Q 003802 651 SLPE-LPPEIVFVGAED------------CTSLETISAFAKLSRSPNIALNFLNCFKLVEDQVSKDNLAV 707 (794)
Q Consensus 651 ~~~~-~~~~L~~L~l~~------------~~~L~~l~~~~n~~~~~~~~~~~~~~~~L~~L~l~~N~l~~ 707 (794)
.+|. ++++|+.|++++ +++|+.|++.+| .+.......+.++++|++|++++|++++
T Consensus 414 ~~~~~l~~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N~~~c 482 (520)
T 2z7x_B 414 TIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASN-QLKSVPDGIFDRLTSLQKIWLHTNPWDC 482 (520)
T ss_dssp GGGGSCCTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred chhhhhcccCCEEECCCCcccccchhhhcCCCCCEEECCCC-cCCccCHHHhccCCcccEEECcCCCCcc
Confidence 3332 224444444432 344455555444 2222111124455555555555555543
No 15
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.97 E-value=1.9e-31 Score=303.04 Aligned_cols=182 Identities=20% Similarity=0.161 Sum_probs=102.1
Q ss_pred CCCCcEEEccCccCccc---CcccccCCCCCEEEcCCCC-CCCCccccccchhccccCCCCCCCccccCCCCCCCCCCCE
Q 003802 517 VECLEELDVGGTAIRQI---PPSIVQLVNLKIFSLHGCK-GQPPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQT 592 (794)
Q Consensus 517 l~~L~~L~l~~~~l~~l---~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 592 (794)
+++|+.|++++|.++.. |..+..+++|++|++++|. ...+..+.....+..+.+..+..........+..+++|+.
T Consensus 346 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 425 (570)
T 2z63_A 346 LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY 425 (570)
T ss_dssp CTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCE
T ss_pred CCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCE
Confidence 34444444444444422 3344445555555555554 1111112222222222333332222222234666777777
Q ss_pred EecCCCCCccCCCCccccCCCCCCeEeCCCCCCc--cCchhhhccCCCCEEecCCCcCCCCCCCCCcccccccccccccc
Q 003802 593 LDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFF--SLPSSINQLLKLKILCLEKCRNLKSLPELPPEIVFVGAEDCTSL 670 (794)
Q Consensus 593 L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~--~lp~~l~~l~~L~~L~L~~n~~~~~~~~~~~~L~~L~l~~~~~L 670 (794)
|++++|. +.+..|..+..+++|++|++++|.++ .+|..+..+++|++|+|++|++....|. .+.+|++|
T Consensus 426 L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~--------~~~~l~~L 496 (570)
T 2z63_A 426 LDISHTH-TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT--------AFNSLSSL 496 (570)
T ss_dssp EECTTSC-CEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTT--------TTTTCTTC
T ss_pred EeCcCCc-ccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChh--------hhhcccCC
Confidence 7777776 44456666777777777777777765 4666677777777777777765443333 23556777
Q ss_pred ccccccccccCCCCceEEEeCCCCchhhhhhhhhHHHH
Q 003802 671 ETISAFAKLSRSPNIALNFLNCFKLVEDQVSKDNLAVT 708 (794)
Q Consensus 671 ~~l~~~~n~~~~~~~~~~~~~~~~L~~L~l~~N~l~~~ 708 (794)
+.|++.+| ......+..+.++++|+.|++++|++++.
T Consensus 497 ~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 533 (570)
T 2z63_A 497 QVLNMASN-QLKSVPDGIFDRLTSLQKIWLHTNPWDCS 533 (570)
T ss_dssp CEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CEEeCCCC-cCCCCCHHHhhcccCCcEEEecCCcccCC
Confidence 77777776 44444444567788888888888887654
No 16
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.97 E-value=2.2e-30 Score=305.97 Aligned_cols=295 Identities=20% Similarity=0.215 Sum_probs=185.7
Q ss_pred CCeEEEEEecCCcccccchhhhccCCCCcEEEEcCcccCCCc-cccc---cCcceeeeecCCCCCC-CCCC-CCCCceEE
Q 003802 332 TDAVEAIIVDVPEMTELEAKSFSTMSNLRLLEINNLYSSGNL-EYLS---NNLRYLKWHEYPFNSL-PVSF-RPEKLFKL 405 (794)
Q Consensus 332 ~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~-~~~~---~~l~~L~~~~~~~~~l-~~~~-~~~~L~~L 405 (794)
.+.++.++++.|.+..+.+..|.++++|++|++++|...+.+ +..+ .+|+.|++.++.+..+ |..+ .+.+|++|
T Consensus 23 p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 102 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFEL 102 (844)
T ss_dssp CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCE
T ss_pred CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEe
Confidence 467888999999998888899999999999999998655544 4444 4666777777776665 4455 78899999
Q ss_pred EcCCCCccc-cccc--ccccccCceeccCCCcCccCCCC--CCCCCCCCEEecccccccccccccccCc--ccccccccc
Q 003802 406 NLCNSRIKY-LWKG--IKPLKELKFMNLSHSCNLIRTPD--FTGVPNLERLNLEGCTRLLEVHQSVGTL--KRLILLNLK 478 (794)
Q Consensus 406 ~L~~n~i~~-l~~~--~~~l~~L~~L~L~~n~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~~~~~~l--~~L~~L~l~ 478 (794)
+|++|.++. +|.. +.++++|++|+|++|.+....+. |.++++|++|++++|.+.+..+..+..+ ++|+.|+++
T Consensus 103 ~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~ 182 (844)
T 3j0a_A 103 RLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLA 182 (844)
T ss_dssp ECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEEC
T ss_pred eCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECC
Confidence 999999885 4544 88999999999999988776543 8889999999999988877777777766 677777777
Q ss_pred ccccccccccccCCCCC------ccEEEecCCCCCCCCCccccC------------------------------------
Q 003802 479 DCRNLVSFPKNVCLMKS------LKILCLCGCLKLEKLPQDLGE------------------------------------ 516 (794)
Q Consensus 479 ~n~~~~~~~~~~~~l~~------L~~L~L~~~~~~~~~~~~~~~------------------------------------ 516 (794)
+|.+.+..|..++.+.+ |++|++++|.+.+..+..+..
T Consensus 183 ~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~ 262 (844)
T 3j0a_A 183 ANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAG 262 (844)
T ss_dssp CSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTT
T ss_pred CCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhc
Confidence 77766666655554443 666666666544333222111
Q ss_pred --CCCCcEEEccCccCccc-CcccccCCCCCEEEcCCCCC--CCCccccccchhccccCCCCCCCccccCCCCCCCCCCC
Q 003802 517 --VECLEELDVGGTAIRQI-PPSIVQLVNLKIFSLHGCKG--QPPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQ 591 (794)
Q Consensus 517 --l~~L~~L~l~~~~l~~l-~~~l~~l~~L~~L~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 591 (794)
.++|+.|++++|.+..+ |..+..+++|+.|++++|.. ..+..+.....+..+.+..|... ......+.++++|+
T Consensus 263 l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~ 341 (844)
T 3j0a_A 263 LARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLG-ELYSSNFYGLPKVA 341 (844)
T ss_dssp TTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCS-CCCSCSCSSCTTCC
T ss_pred cccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCC-ccCHHHhcCCCCCC
Confidence 14566666666655533 33455566666666665551 11222222222222222323222 11112345555555
Q ss_pred EEecCCCCCccCCCCccccCCCCCCeEeCCCCCCccC
Q 003802 592 TLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSL 628 (794)
Q Consensus 592 ~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l 628 (794)
.|++++|. +.+..+..+..+++|+.|+|++|.++.+
T Consensus 342 ~L~L~~N~-i~~~~~~~~~~l~~L~~L~Ls~N~l~~i 377 (844)
T 3j0a_A 342 YIDLQKNH-IAIIQDQTFKFLEKLQTLDLRDNALTTI 377 (844)
T ss_dssp EEECCSCC-CCCCCSSCSCSCCCCCEEEEETCCSCCC
T ss_pred EEECCCCC-CCccChhhhcCCCCCCEEECCCCCCCcc
Confidence 55555555 3333344455555555555555555443
No 17
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.97 E-value=4e-31 Score=298.76 Aligned_cols=368 Identities=18% Similarity=0.145 Sum_probs=219.6
Q ss_pred CeEEEEEecCCcccccchhhhccCCCCcEEEEcCcccCCCcccccc---CcceeeeecCCCCCCCCC-C-CCCCceEEEc
Q 003802 333 DAVEAIIVDVPEMTELEAKSFSTMSNLRLLEINNLYSSGNLEYLSN---NLRYLKWHEYPFNSLPVS-F-RPEKLFKLNL 407 (794)
Q Consensus 333 ~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~---~l~~L~~~~~~~~~l~~~-~-~~~~L~~L~L 407 (794)
+.++.++++.|.+..+.+..|.++++|++|++++|.+.+..+..+. +|+.|++.++.+..++.. + .+++|++|++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 105 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence 5788899999988888888899999999999999988877665554 566666666666666543 2 6789999999
Q ss_pred CCCCcccc--cccccccccCceeccCCCcCccCCC--CCCCCCCCCEEecccccccccccccccCccccccccccccccc
Q 003802 408 CNSRIKYL--WKGIKPLKELKFMNLSHSCNLIRTP--DFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNL 483 (794)
Q Consensus 408 ~~n~i~~l--~~~~~~l~~L~~L~L~~n~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 483 (794)
++|.++.+ |..+.++++|++|++++|......+ .+.++++|++|++++|.+.+..|..+..+++|++|++++|...
T Consensus 106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 185 (549)
T 2z81_A 106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA 185 (549)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST
T ss_pred CCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc
Confidence 99998854 5678889999999999987444433 3888999999999998888888888888888888887776643
Q ss_pred cccccc-cCCCCCccEEEecCCCCCCCC--Cc-----------------------------cccCCCCCcEEEccCccCc
Q 003802 484 VSFPKN-VCLMKSLKILCLCGCLKLEKL--PQ-----------------------------DLGEVECLEELDVGGTAIR 531 (794)
Q Consensus 484 ~~~~~~-~~~l~~L~~L~L~~~~~~~~~--~~-----------------------------~~~~l~~L~~L~l~~~~l~ 531 (794)
.+|.. +..+++|++|++++|.+.+.. +. .+..+++|+.+++++|.+.
T Consensus 186 -~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~ 264 (549)
T 2z81_A 186 -FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLN 264 (549)
T ss_dssp -THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEE
T ss_pred -ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccccc
Confidence 33332 245677777777777665421 00 0111222222222222211
Q ss_pred ccC------------------------------------cccccCCCCCEEEcCCCC-CCCCccc-cccchhccccCCCC
Q 003802 532 QIP------------------------------------PSIVQLVNLKIFSLHGCK-GQPPKIL-SSNFFLSLLLPNKN 573 (794)
Q Consensus 532 ~l~------------------------------------~~l~~l~~L~~L~l~~~~-~~~~~~~-~~~~~~~~~~~~~~ 573 (794)
.++ ......++|+.|++++|. ...|..+ .....+..+.+..+
T Consensus 265 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N 344 (549)
T 2z81_A 265 GLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSEN 344 (549)
T ss_dssp CCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSS
T ss_pred ccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCC
Confidence 100 001112345555555544 2222221 11222222333333
Q ss_pred CCCcccc--CCCCCCCCCCCEEecCCCCCccCCCC---ccccCCCCCCeEeCCCCCCccCchhhhccCCCCEEecCCCcC
Q 003802 574 SDSMCLS--FPRFTGLSSLQTLDLSDCNLLEGAIP---SDIGSLFSLEAIDLSGNNFFSLPSSINQLLKLKILCLEKCRN 648 (794)
Q Consensus 574 ~~~~~~~--~~~~~~~~~L~~L~l~~n~~~~~~~~---~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~~ 648 (794)
....... ...++.+++|+.|++++|.+.. ++ ..+..+++|++|++++|+++.+|..+..+++|++|++++|.+
T Consensus 345 ~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l 422 (549)
T 2z81_A 345 LMVEEYLKNSACKGAWPSLQTLVLSQNHLRS--MQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGI 422 (549)
T ss_dssp CCCHHHHHHHTCTTSSTTCCEEECTTSCCCC--HHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEECTTSCC
T ss_pred ccccccccchhhhhccccCcEEEccCCcccc--cccchhhhhcCCCCCEEECCCCCCccCChhhcccccccEEECCCCCc
Confidence 3222110 1224566677777777776322 22 336667777777777777777776666667777777777664
Q ss_pred CCCCCCCCcccccccccc---------ccccccccccccccCCCCceEEEeCCCCchhhhhhhhhHH
Q 003802 649 LKSLPELPPEIVFVGAED---------CTSLETISAFAKLSRSPNIALNFLNCFKLVEDQVSKDNLA 706 (794)
Q Consensus 649 ~~~~~~~~~~L~~L~l~~---------~~~L~~l~~~~n~~~~~~~~~~~~~~~~L~~L~l~~N~l~ 706 (794)
...-..+|++|+.|++++ +++|+.|++++| .... ++. ...+++|++|++++|+++
T Consensus 423 ~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N-~l~~-ip~-~~~l~~L~~L~Ls~N~l~ 486 (549)
T 2z81_A 423 RVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRN-KLKT-LPD-ASLFPVLLVMKISRNQLK 486 (549)
T ss_dssp SCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSS-CCSS-CCC-GGGCTTCCEEECCSSCCC
T ss_pred ccccchhcCCceEEECCCCChhhhcccCChhcEEECCCC-ccCc-CCC-cccCccCCEEecCCCccC
Confidence 322223445566665543 455666666655 2221 111 234556666666666554
No 18
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.97 E-value=1.1e-29 Score=294.61 Aligned_cols=393 Identities=20% Similarity=0.134 Sum_probs=191.8
Q ss_pred CCeEEEEEecCCcccccchhhhccCCCCcEEEEcCcccCCCccccc-----cCcceeeeecCCCCCCCCC-C--------
Q 003802 332 TDAVEAIIVDVPEMTELEAKSFSTMSNLRLLEINNLYSSGNLEYLS-----NNLRYLKWHEYPFNSLPVS-F-------- 397 (794)
Q Consensus 332 ~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~-----~~l~~L~~~~~~~~~l~~~-~-------- 397 (794)
...++.++++.|.+....+..|.++++|++|++++|.+.+..+..+ .+|+.|++.++.+..++.. +
T Consensus 120 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 199 (680)
T 1ziw_A 120 QKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFG 199 (680)
T ss_dssp CTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECE
T ss_pred cCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhh
Confidence 3445555555555555555555555555555555555554443321 2455555555444433221 0
Q ss_pred --------------------CCCCceEEEcCCCCcccc-ccccccccc--CceeccCCCcCccCCCC-CCCCCCCCEEec
Q 003802 398 --------------------RPEKLFKLNLCNSRIKYL-WKGIKPLKE--LKFMNLSHSCNLIRTPD-FTGVPNLERLNL 453 (794)
Q Consensus 398 --------------------~~~~L~~L~L~~n~i~~l-~~~~~~l~~--L~~L~L~~n~~~~~~~~-~~~l~~L~~L~l 453 (794)
...+|++|++++|.++.+ |..+..++. |++|++++|.+....+. |..+++|++|++
T Consensus 200 L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 279 (680)
T 1ziw_A 200 LFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFL 279 (680)
T ss_dssp EECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred hhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeC
Confidence 012344444444444433 223444433 66666666665555444 566666666666
Q ss_pred ccccccccccccccCcccccccccccccccc-----cccc----ccCCCCCccEEEecCCCCCCCCCccccCCCCCcEEE
Q 003802 454 EGCTRLLEVHQSVGTLKRLILLNLKDCRNLV-----SFPK----NVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELD 524 (794)
Q Consensus 454 ~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~-----~~~~----~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~ 524 (794)
++|.+.+..|..+..+++|++|++++|...+ .+|. .+..+++|++|++++|.+.+..+..|.++++|++|+
T Consensus 280 ~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 359 (680)
T 1ziw_A 280 EYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLS 359 (680)
T ss_dssp CSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEE
T ss_pred CCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEE
Confidence 6666555555445555555555444432211 1111 333444444444444444444443344444444433
Q ss_pred ccC----------------------------ccCccc-CcccccCCCCCEEEcCCCCC--CCC-ccccccchhccccCCC
Q 003802 525 VGG----------------------------TAIRQI-PPSIVQLVNLKIFSLHGCKG--QPP-KILSSNFFLSLLLPNK 572 (794)
Q Consensus 525 l~~----------------------------~~l~~l-~~~l~~l~~L~~L~l~~~~~--~~~-~~~~~~~~~~~~~~~~ 572 (794)
+++ |+++.+ |..+..+++|+.|++++|.. ..+ ..+.....+..+.+..
T Consensus 360 Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~ 439 (680)
T 1ziw_A 360 LSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSY 439 (680)
T ss_dssp CTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCS
T ss_pred CCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCC
Confidence 333 333322 33455566666666666652 111 2222222222222222
Q ss_pred CC------------------------CCccccC-CCCCCCCCCCEEecCCCCCccCCCCccccCCCCCCeEeCCCCCCcc
Q 003802 573 NS------------------------DSMCLSF-PRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFS 627 (794)
Q Consensus 573 ~~------------------------~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 627 (794)
+. ....... ..+.++++|+.|++++|. +++..+..+.++++|++|++++|.++.
T Consensus 440 n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~Ls~N~l~~ 518 (680)
T 1ziw_A 440 NKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNN-IANINDDMLEGLEKLEILDLQHNNLAR 518 (680)
T ss_dssp CSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCGG
T ss_pred CCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCC-CCcCChhhhccccccCEEeCCCCCccc
Confidence 22 1111111 124455555555555555 333334445555555555555555543
Q ss_pred Cch---------hhhccCCCCEEecCCCcCCCCCCCCCccccccccccccccccccccccccCCCCceEEEeCCCCchhh
Q 003802 628 LPS---------SINQLLKLKILCLEKCRNLKSLPELPPEIVFVGAEDCTSLETISAFAKLSRSPNIALNFLNCFKLVED 698 (794)
Q Consensus 628 lp~---------~l~~l~~L~~L~L~~n~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~n~~~~~~~~~~~~~~~~L~~L 698 (794)
++. .+..+++|++|+|++|++. .+|. . .+.++++|+.|++++| ......+..+.++++|+.|
T Consensus 519 ~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~---~----~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L 589 (680)
T 1ziw_A 519 LWKHANPGGPIYFLKGLSHLHILNLESNGFD-EIPV---E----VFKDLFELKIIDLGLN-NLNTLPASVFNNQVSLKSL 589 (680)
T ss_dssp GGSTTSTTSCCCTTTTCTTCCEEECCSSCCC-CCCT---T----TTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred cchhhccCCcchhhcCCCCCCEEECCCCCCC-CCCH---H----HcccccCcceeECCCC-CCCcCCHhHhCCCCCCCEE
Confidence 321 1445555555555555432 2221 1 2456788888888777 4445555567788999999
Q ss_pred hhhhhhHHHHHHHHHHhhhccccccCcccccccccc
Q 003802 699 QVSKDNLAVTLMKQWLLSYHSLVAWTDSTRRFNVNY 734 (794)
Q Consensus 699 ~l~~N~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 734 (794)
++++|.+++.....+...++.+..+....+.+.+.+
T Consensus 590 ~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c 625 (680)
T 1ziw_A 590 NLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTC 625 (680)
T ss_dssp ECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCC
T ss_pred ECCCCcCCccChhHhcccccccCEEEccCCCcccCC
Confidence 999998876444333335566666666555554443
No 19
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.97 E-value=4.9e-30 Score=297.46 Aligned_cols=220 Identities=18% Similarity=0.136 Sum_probs=167.7
Q ss_pred CeEEEEEecCCcccccchhhhccCCCCcEEEEcCcccCCCccccc---cCcceeeeecCCCCCCCCC-C-CCCCceEEEc
Q 003802 333 DAVEAIIVDVPEMTELEAKSFSTMSNLRLLEINNLYSSGNLEYLS---NNLRYLKWHEYPFNSLPVS-F-RPEKLFKLNL 407 (794)
Q Consensus 333 ~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~---~~l~~L~~~~~~~~~l~~~-~-~~~~L~~L~L 407 (794)
..++.++++.+.+..++...|.++++|++|++++|.+.+..+..+ .+|+.|++.++.+..++.. + .+++|++|++
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 104 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 104 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence 578899999999999999999999999999999999988777554 5788888888888888864 4 7889999999
Q ss_pred CCCCccccc-ccccccccCceeccCCCcCccCCCC-CCCCCCCCEEeccccccccccccccc--Cccccccccccccccc
Q 003802 408 CNSRIKYLW-KGIKPLKELKFMNLSHSCNLIRTPD-FTGVPNLERLNLEGCTRLLEVHQSVG--TLKRLILLNLKDCRNL 483 (794)
Q Consensus 408 ~~n~i~~l~-~~~~~l~~L~~L~L~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~--~l~~L~~L~l~~n~~~ 483 (794)
++|.++.++ ..|.++++|++|++++|.+....+. +.++++|++|++++|.+.+..+..+. .+++|++|++++|.+.
T Consensus 105 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~ 184 (680)
T 1ziw_A 105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIK 184 (680)
T ss_dssp CSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCC
T ss_pred CCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCccc
Confidence 999999887 4589999999999999988877766 88899999999999987766665544 4578888888888776
Q ss_pred cccccccCCC---------------------------CCccEEEecCCCCCCCCCccccCCCC--CcEEEccCccCcccC
Q 003802 484 VSFPKNVCLM---------------------------KSLKILCLCGCLKLEKLPQDLGEVEC--LEELDVGGTAIRQIP 534 (794)
Q Consensus 484 ~~~~~~~~~l---------------------------~~L~~L~L~~~~~~~~~~~~~~~l~~--L~~L~l~~~~l~~l~ 534 (794)
+..|..+..+ ++|++|++++|.+.+..|..+..++. |+.|++++|.++.++
T Consensus 185 ~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~ 264 (680)
T 1ziw_A 185 EFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVG 264 (680)
T ss_dssp CBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEEC
T ss_pred ccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccC
Confidence 6555544332 44556666666665555555655543 666666666666443
Q ss_pred -cccccCCCCCEEEcCCCC
Q 003802 535 -PSIVQLVNLKIFSLHGCK 552 (794)
Q Consensus 535 -~~l~~l~~L~~L~l~~~~ 552 (794)
..+..+++|++|++++|.
T Consensus 265 ~~~~~~l~~L~~L~L~~n~ 283 (680)
T 1ziw_A 265 NDSFAWLPQLEYFFLEYNN 283 (680)
T ss_dssp TTTTTTCTTCCEEECCSCC
T ss_pred cccccCcccccEeeCCCCc
Confidence 445666666666666665
No 20
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.97 E-value=3.3e-30 Score=292.92 Aligned_cols=286 Identities=22% Similarity=0.285 Sum_probs=212.5
Q ss_pred hhhhHhHhcCCCCeEEEEEEccCCCcHHHHHHHHHHHh---hcccc-ceEEEEechhhhcccChHHHHHHHHHHHhccc-
Q 003802 2 EKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTL---KDQFE-ASSFLANVREVSVTRGLVPLQEQLLSEVLMER- 76 (794)
Q Consensus 2 ~~l~~~l~~~~~~~~vi~i~G~~GvGKTtLa~~v~~~~---~~~f~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~- 76 (794)
++|.+++....++.++|+|+|+||+||||||++++++. +.+|+ .++|+..... . ...+......+...+....
T Consensus 134 ~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~-~~~~~~~l~~l~~~l~~~~~ 211 (591)
T 1z6t_A 134 NAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-D-KSGLLMKLQNLCTRLDQDES 211 (591)
T ss_dssp HHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-C-HHHHHHHHHHHHHHHCSSCC
T ss_pred HHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-c-hHHHHHHHHHHHHHhccccc
Confidence 45667776555678999999999999999999999843 77895 6788763211 0 1111222223333332111
Q ss_pred --cccccchhhhHHHHHHHhcC--CeEEEEEcCCCChHHHHHHhcCCCCCCCCCEEEEEeCChhhhhhcCcCcEEEc---
Q 003802 77 --DLIIWDVHKGINLIRWRLCR--KRVLVILDDVDQLEQLQALVGNHDWFGFGSRIIITSRDEHVLKSHGVTNTYKV--- 149 (794)
Q Consensus 77 --~~~~~~~~~~~~~l~~~l~~--~r~LlVlDd~~~~~~~~~l~~~~~~~~~gs~IlvTtR~~~v~~~~~~~~~~~l--- 149 (794)
.....+.+.....+.+.+.+ +++||||||+|+...++.+ .+|++||||||++.++..+. ...+++
T Consensus 212 ~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l-------~~~~~ilvTsR~~~~~~~~~-~~~~~v~~l 283 (591)
T 1z6t_A 212 FSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF-------DSQCQILLTTRDKSVTDSVM-GPKYVVPVE 283 (591)
T ss_dssp SCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT-------CSSCEEEEEESCGGGGTTCC-SCEEEEECC
T ss_pred cccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh-------cCCCeEEEECCCcHHHHhcC-CCceEeecC
Confidence 12234455667777777765 7899999999998776543 46899999999998876544 234444
Q ss_pred CCCChHhHHHHHHhhccCCCCCChhHHHHHHHHHHHhCCCchHHHHHhhhhcCCChHHHHHHHHHHHcCC----------
Q 003802 150 RGLDYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIEVLGSFLCGRSVEEWKSALNRLQEAP---------- 219 (794)
Q Consensus 150 ~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~a~~L~~~~~~~w~~~l~~l~~~~---------- 219 (794)
++|+.+|++++|...++.. .....+.+.+|+++|+|+|+|++.+|+.++... .+|...++.+....
T Consensus 284 ~~L~~~ea~~L~~~~~~~~---~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~~~l~~l~~~~~~~~~~~~~~ 359 (591)
T 1z6t_A 284 SSLGKEKGLEILSLFVNMK---KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEYYLKQLQNKQFKRIRKSSSY 359 (591)
T ss_dssp SSCCHHHHHHHHHHHHTSC---GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHHHHHHHHHSCCCCCSSCCCSS
T ss_pred CCCCHHHHHHHHHHHhCCC---cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc-hhHHHHHHHHHHhHHHHhhhcccc
Confidence 5899999999999988532 122235788999999999999999999997643 46888888876432
Q ss_pred -ChhHHHHHHhhccCCChhhHhhhhhhcccccCCC--HHHHHHhhhhcCCCchhhHHHHhhcccceeec----CeehHHH
Q 003802 220 -NEKVLKVLRISYDGLDRRDKEIFLDIACFFKGKD--EDRVRKKLDSCGFNSDIGIRELLDKSLITIVN----NKLWMHD 292 (794)
Q Consensus 220 -~~~~~~~l~~sy~~L~~~~~~~~~~~s~fp~~~~--~~~l~~~~~~~g~~~~~~l~~L~~~~ll~~~~----~~~~mh~ 292 (794)
...+..++..||+.||++.|.||.++|+||+++. .+.+..+|..++......+++|++++|+.... .+|+||+
T Consensus 360 ~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~~~~~~~~l~~L~~~~Ll~~~~~~~~~~~~~H~ 439 (591)
T 1z6t_A 360 DYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDMETEEVEDILQEFVNKSLLFCDRNGKSFRYYLHD 439 (591)
T ss_dssp CCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSSEEEEETTEEEEECCH
T ss_pred chHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccCHHHHHHHHHHHHhCcCeEEecCCCccEEEEcH
Confidence 2478899999999999999999999999998764 46788889765444566799999999998652 2699999
Q ss_pred HHHHHHHHH
Q 003802 293 LLQEMGWEI 301 (794)
Q Consensus 293 li~~~~~~~ 301 (794)
+++++++..
T Consensus 440 lv~~~~~~~ 448 (591)
T 1z6t_A 440 LQVDFLTEK 448 (591)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 999999877
No 21
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.97 E-value=4.2e-30 Score=276.52 Aligned_cols=318 Identities=18% Similarity=0.162 Sum_probs=227.8
Q ss_pred CeEEEEEecCCcccccchhhhccCCCCcEEEEcCcccCCCccccccCcceeeeecCCCCCCCCCCCCCCceEEEcCCCCc
Q 003802 333 DAVEAIIVDVPEMTELEAKSFSTMSNLRLLEINNLYSSGNLEYLSNNLRYLKWHEYPFNSLPVSFRPEKLFKLNLCNSRI 412 (794)
Q Consensus 333 ~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~~~~~~~~l~~~~~~~~L~~L~L~~n~i 412 (794)
..++.+.+..+.+..++...|.++++|++|++++|.+.+..+..+. .+++|++|++++|.+
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~-------------------~l~~L~~L~L~~n~l 105 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFA-------------------YAHTIQKLYMGFNAI 105 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTT-------------------TCTTCCEEECCSSCC
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhcc-------------------CCCCcCEEECCCCCC
Confidence 4455555666655666666666666666666666555433322222 455788888888888
Q ss_pred ccccc-cccccccCceeccCCCcCccCCCC-CCCCCCCCEEecccccccccccccccCcccccccccccccccccccccc
Q 003802 413 KYLWK-GIKPLKELKFMNLSHSCNLIRTPD-FTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNV 490 (794)
Q Consensus 413 ~~l~~-~~~~l~~L~~L~L~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~ 490 (794)
+.++. .+.++++|++|++++|.+...++. |..+++|++|++++|.+.+..|..+..+++|++|++++|.+... .+
T Consensus 106 ~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~ 182 (390)
T 3o6n_A 106 RYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DL 182 (390)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CG
T ss_pred CcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---cc
Confidence 87754 478888888888888877766665 67888888888888887776677788888888888888776543 24
Q ss_pred CCCCCccEEEecCCCCCCCCCccccCCCCCcEEEccCccCcccCcccccCCCCCEEEcCCCCCCCCccccccchhccccC
Q 003802 491 CLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPPSIVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLP 570 (794)
Q Consensus 491 ~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 570 (794)
..+++|++|++++|.+.+ +...++|+.|++++|.++.+|... .++|+.|++++|....
T Consensus 183 ~~l~~L~~L~l~~n~l~~-----~~~~~~L~~L~l~~n~l~~~~~~~--~~~L~~L~l~~n~l~~--------------- 240 (390)
T 3o6n_A 183 SLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTD--------------- 240 (390)
T ss_dssp GGCTTCSEEECCSSCCSE-----EECCSSCSEEECCSSCCCEEECCC--CSSCCEEECCSSCCCC---------------
T ss_pred ccccccceeecccccccc-----cCCCCcceEEECCCCeeeeccccc--cccccEEECCCCCCcc---------------
Confidence 567888888888876543 344567888888888888776533 5788888888886321
Q ss_pred CCCCCCccccCCCCCCCCCCCEEecCCCCCccCCCCccccCCCCCCeEeCCCCCCccCchhhhccCCCCEEecCCCcCCC
Q 003802 571 NKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLPSSINQLLKLKILCLEKCRNLK 650 (794)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~~~~ 650 (794)
.+.+..+++|++|++++|. +++..|..+..+++|++|+|++|+++.+|..+..+++|++|+|++|++.
T Consensus 241 ----------~~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~- 308 (390)
T 3o6n_A 241 ----------TAWLLNYPGLVEVDLSYNE-LEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL- 308 (390)
T ss_dssp ----------CGGGGGCTTCSEEECCSSC-CCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCC-
T ss_pred ----------cHHHcCCCCccEEECCCCc-CCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcce-
Confidence 1336677888888888888 5555677888888888888888888888877778888888888888743
Q ss_pred CCCCCCccccccccccccccccccccccccCCCCceEEEeCCCCchhhhhhhhhHHHHHHHHHHhhhc
Q 003802 651 SLPELPPEIVFVGAEDCTSLETISAFAKLSRSPNIALNFLNCFKLVEDQVSKDNLAVTLMKQWLLSYH 718 (794)
Q Consensus 651 ~~~~~~~~L~~L~l~~~~~L~~l~~~~n~~~~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~~~~ 718 (794)
.+ |+. +..+++|+.|++.+|. +.. ..+..+++|+.|++++|++.+.....|.....
T Consensus 309 ~~---~~~-----~~~l~~L~~L~L~~N~-i~~---~~~~~~~~L~~L~l~~N~~~~~~~~~~~~~~~ 364 (390)
T 3o6n_A 309 HV---ERN-----QPQFDRLENLYLDHNS-IVT---LKLSTHHTLKNLTLSHNDWDCNSLRALFRNVA 364 (390)
T ss_dssp CC---GGG-----HHHHTTCSEEECCSSC-CCC---CCCCTTCCCSEEECCSSCEEHHHHHHHTTTCC
T ss_pred ec---Ccc-----ccccCcCCEEECCCCc-cce---eCchhhccCCEEEcCCCCccchhHHHHHHHHH
Confidence 23 322 3456778888877772 222 23778999999999999999888877766554
No 22
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.97 E-value=8.4e-30 Score=282.21 Aligned_cols=321 Identities=18% Similarity=0.159 Sum_probs=239.4
Q ss_pred EEEcCcccCCCccccccCcceeeeecCCCCCCCC-CC-CCCCceEEEcCCCCcccc-cccccccccCceeccCCCcCccC
Q 003802 362 LEINNLYSSGNLEYLSNNLRYLKWHEYPFNSLPV-SF-RPEKLFKLNLCNSRIKYL-WKGIKPLKELKFMNLSHSCNLIR 438 (794)
Q Consensus 362 L~l~~n~~~~~~~~~~~~l~~L~~~~~~~~~l~~-~~-~~~~L~~L~L~~n~i~~l-~~~~~~l~~L~~L~L~~n~~~~~ 438 (794)
++.+++.+.........+++.|++.++.+..++. .+ .+++|++|+|++|.++.+ |..|.++++|++|+|++|.+...
T Consensus 16 v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~ 95 (477)
T 2id5_A 16 VLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLI 95 (477)
T ss_dssp EECCSCCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSC
T ss_pred EEeCCCCcCcCCCCCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCcc
Confidence 3333333333333333445555555555544432 22 566899999999999877 66788999999999999988777
Q ss_pred CCC-CCCCCCCCEEecccccccccccccccCccccccccccccccccccccccCCCCCccEEEecCCCCCCCCCccccCC
Q 003802 439 TPD-FTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEV 517 (794)
Q Consensus 439 ~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l 517 (794)
++. |.++++|++|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+.++
T Consensus 96 ~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l 175 (477)
T 2id5_A 96 PLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHL 175 (477)
T ss_dssp CTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTC
T ss_pred CcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhccc
Confidence 665 7889999999999998888888888899999999999988877778888899999999999988877666678889
Q ss_pred CCCcEEEccCccCcccCc-ccccCCCCCEEEcCCCCCCCCccccccchhccccCCCCCCCccccCCCCCCCCCCCEEecC
Q 003802 518 ECLEELDVGGTAIRQIPP-SIVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLS 596 (794)
Q Consensus 518 ~~L~~L~l~~~~l~~l~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 596 (794)
++|+.|++++|.+..++. .+..+++|+.|++++|..... ..+......+|+.|+++
T Consensus 176 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~-----------------------~~~~~~~~~~L~~L~l~ 232 (477)
T 2id5_A 176 HGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDT-----------------------MTPNCLYGLNLTSLSIT 232 (477)
T ss_dssp TTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCE-----------------------ECTTTTTTCCCSEEEEE
T ss_pred CCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccc-----------------------cCcccccCccccEEECc
Confidence 999999999998886654 678889999999988762110 00112233489999999
Q ss_pred CCCCccCCCCccccCCCCCCeEeCCCCCCccCch-hhhccCCCCEEecCCCcCCCCCCCCCccccccccccccccccccc
Q 003802 597 DCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLPS-SINQLLKLKILCLEKCRNLKSLPELPPEIVFVGAEDCTSLETISA 675 (794)
Q Consensus 597 ~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~L~~n~~~~~~~~~~~~L~~L~l~~~~~L~~l~~ 675 (794)
+|.+ ++..+..+..+++|+.|+|++|.++.++. .+..+++|+.|+|++|.+....|. .+.++++|+.|++
T Consensus 233 ~n~l-~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--------~~~~l~~L~~L~L 303 (477)
T 2id5_A 233 HCNL-TAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPY--------AFRGLNYLRVLNV 303 (477)
T ss_dssp SSCC-CSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTT--------TBTTCTTCCEEEC
T ss_pred CCcc-cccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHH--------HhcCcccCCEEEC
Confidence 9984 43333568889999999999999886654 578889999999999886554343 4567888888888
Q ss_pred cccccCCCCceEEEeCCCCchhhhhhhhhHHHHHHHHHHh
Q 003802 676 FAKLSRSPNIALNFLNCFKLVEDQVSKDNLAVTLMKQWLL 715 (794)
Q Consensus 676 ~~n~~~~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~ 715 (794)
++| .+....+..+.+|++|++|++++|++.+.....|+.
T Consensus 304 ~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~ 342 (477)
T 2id5_A 304 SGN-QLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVF 342 (477)
T ss_dssp CSS-CCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHHH
T ss_pred CCC-cCceeCHhHcCCCcccCEEEccCCCccCccchHhHH
Confidence 877 445555556788999999999999987655445543
No 23
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=2.1e-29 Score=266.82 Aligned_cols=302 Identities=16% Similarity=0.213 Sum_probs=159.8
Q ss_pred eEEEEEecCCcccccchhhhccCCCCcEEEEcCcccCCCccccccCcceeeeecCCCCCCCCCCCCCCceEEEcCCCCcc
Q 003802 334 AVEAIIVDVPEMTELEAKSFSTMSNLRLLEINNLYSSGNLEYLSNNLRYLKWHEYPFNSLPVSFRPEKLFKLNLCNSRIK 413 (794)
Q Consensus 334 ~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~~~~~~~~l~~~~~~~~L~~L~L~~n~i~ 413 (794)
.++.+.+.++.+..++ .+..+++|++|++++|.+.+ ++....+++|++|++++|.++
T Consensus 45 ~L~~L~l~~~~i~~~~--~~~~~~~L~~L~l~~n~i~~---------------------~~~~~~l~~L~~L~L~~n~i~ 101 (347)
T 4fmz_A 45 SITKLVVAGEKVASIQ--GIEYLTNLEYLNLNGNQITD---------------------ISPLSNLVKLTNLYIGTNKIT 101 (347)
T ss_dssp TCSEEECCSSCCCCCT--TGGGCTTCCEEECCSSCCCC---------------------CGGGTTCTTCCEEECCSSCCC
T ss_pred cccEEEEeCCccccch--hhhhcCCccEEEccCCcccc---------------------chhhhcCCcCCEEEccCCccc
Confidence 4455555555444443 25555555555555555443 333223445666666666665
Q ss_pred cccccccccccCceeccCCCcCccCCCCCCCCCCCCEEecccccccccccccccCccccccccccccccccccccccCCC
Q 003802 414 YLWKGIKPLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLM 493 (794)
Q Consensus 414 ~l~~~~~~l~~L~~L~L~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l 493 (794)
.++ .+..+++|++|++++|.+....+ +..+++|++|++++|......+ .+..+++|++|++++|.+....+ +..+
T Consensus 102 ~~~-~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l 176 (347)
T 4fmz_A 102 DIS-ALQNLTNLRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANL 176 (347)
T ss_dssp CCG-GGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGC
T ss_pred Cch-HHcCCCcCCEEECcCCcccCchh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccC
Confidence 554 35556666666666665443322 5556666666666654444433 25556666666666655433222 5556
Q ss_pred CCccEEEecCCCCCCCCCccccCCCCCcEEEccCccCcccCcccccCCCCCEEEcCCCCCCCCccccccchhccccCCCC
Q 003802 494 KSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPPSIVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKN 573 (794)
Q Consensus 494 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 573 (794)
++|++|++++|.+.+..+ +..+++|+.|++++|.++.++. +..+++|++|++++|...
T Consensus 177 ~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~------------------- 234 (347)
T 4fmz_A 177 TDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKIT------------------- 234 (347)
T ss_dssp TTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCC-------------------
T ss_pred CCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccC-------------------
Confidence 666666666655443222 5556666666666666655543 555666666666665421
Q ss_pred CCCccccCCCCCCCCCCCEEecCCCCCccCCCCccccCCCCCCeEeCCCCCCccCchhhhccCCCCEEecCCCcCCCCCC
Q 003802 574 SDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLPSSINQLLKLKILCLEKCRNLKSLP 653 (794)
Q Consensus 574 ~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~~ 653 (794)
..+.+..+++|++|++++|.+.. + ..+..+++|++|++++|.++.++ .+..+++|+.|++++|+.....+
T Consensus 235 ------~~~~~~~l~~L~~L~l~~n~l~~--~-~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~ 304 (347)
T 4fmz_A 235 ------DLSPLANLSQLTWLEIGTNQISD--I-NAVKDLTKLKMLNVGSNQISDIS-VLNNLSQLNSLFLNNNQLGNEDM 304 (347)
T ss_dssp ------CCGGGTTCTTCCEEECCSSCCCC--C-GGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCGGGH
T ss_pred ------CCcchhcCCCCCEEECCCCccCC--C-hhHhcCCCcCEEEccCCccCCCh-hhcCCCCCCEEECcCCcCCCcCh
Confidence 11114455566666666665322 2 34556666666666666666554 45566666666666665433222
Q ss_pred CCCccccccccccccccccccccccccCCCCceEEEeCCCCchhhhhhhhhHH
Q 003802 654 ELPPEIVFVGAEDCTSLETISAFAKLSRSPNIALNFLNCFKLVEDQVSKDNLA 706 (794)
Q Consensus 654 ~~~~~L~~L~l~~~~~L~~l~~~~n~~~~~~~~~~~~~~~~L~~L~l~~N~l~ 706 (794)
. .+.++++|+.|++++| ......+ +..+++|++|++++|.++
T Consensus 305 ~--------~l~~l~~L~~L~L~~n-~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 305 E--------VIGGLTNLTTLFLSQN-HITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp H--------HHHTCTTCSEEECCSS-SCCCCGG--GGGCTTCSEESSSCC---
T ss_pred h--------HhhccccCCEEEccCC-ccccccC--hhhhhccceeehhhhccc
Confidence 1 2344555555555555 2333333 556777777777777664
No 24
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.97 E-value=1.9e-29 Score=275.11 Aligned_cols=307 Identities=18% Similarity=0.101 Sum_probs=186.1
Q ss_pred hccCCCCcEEEEcCcccCCCcc-ccccCcceeeeecCCCCCCCCCCCCCCceEEEcCCCCcccccccccccccCceeccC
Q 003802 353 FSTMSNLRLLEINNLYSSGNLE-YLSNNLRYLKWHEYPFNSLPVSFRPEKLFKLNLCNSRIKYLWKGIKPLKELKFMNLS 431 (794)
Q Consensus 353 ~~~~~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~~~~~~~~l~~~~~~~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~ 431 (794)
+.++++|++|++++|.+.+... ..+.+|+.|++.++.+..++ ...+++|++|++++|.++.++ +.++++|++|+++
T Consensus 38 ~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~ 114 (457)
T 3bz5_A 38 EEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCD 114 (457)
T ss_dssp HHHHTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECC
T ss_pred hhHcCCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCceee--cCCCCcCCEEECC
Confidence 3444455555555554443210 11234444444444444443 224556666666666666654 6666666666666
Q ss_pred CCcCccCCCCCCCCCCCCEEecccccccccccccccCccccccccccccccccccccccCCCCCccEEEecCCCCCCCCC
Q 003802 432 HSCNLIRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLP 511 (794)
Q Consensus 432 ~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~ 511 (794)
+|.+... + +..+++|++|++++|.+.+. .++.+++|++|++++|...+.+ .+..+++|++|++++|.+.+ +|
T Consensus 115 ~N~l~~l-~-~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~ 186 (457)
T 3bz5_A 115 TNKLTKL-D-VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD 186 (457)
T ss_dssp SSCCSCC-C-CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC
T ss_pred CCcCCee-c-CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-ec
Confidence 6655543 2 56666666666666665442 2566666666666666555544 25566666666666666555 33
Q ss_pred ccccCCCCCcEEEccCccCcccCcccccCCCCCEEEcCCCCCCCCccccccchhccccCCCCCCCccccCCCCCCCCCCC
Q 003802 512 QDLGEVECLEELDVGGTAIRQIPPSIVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQ 591 (794)
Q Consensus 512 ~~~~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 591 (794)
++.+++|+.|++++|.++.++ ++.+++|+.|++++|... .++ +..+++|+
T Consensus 187 --l~~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~l~-------------------------~ip-~~~l~~L~ 236 (457)
T 3bz5_A 187 --VSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLT-------------------------EID-VTPLTQLT 236 (457)
T ss_dssp --CTTCTTCCEEECCSSCCSCCC--CTTCTTCSEEECCSSCCS-------------------------CCC-CTTCTTCS
T ss_pred --cccCCCCCEEECcCCcCCeec--cccCCCCCEEECcCCccc-------------------------ccC-ccccCCCC
Confidence 566666666666666666553 556666666666666521 112 45556666
Q ss_pred EEecCCCCCccCCCCccccCCC-------CCCeEeCCCCCCc-cCchhhhccCCCCEEecCCCcCCCCCCCCCccccccc
Q 003802 592 TLDLSDCNLLEGAIPSDIGSLF-------SLEAIDLSGNNFF-SLPSSINQLLKLKILCLEKCRNLKSLPELPPEIVFVG 663 (794)
Q Consensus 592 ~L~l~~n~~~~~~~~~~~~~l~-------~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~~~~~~~L~~L~ 663 (794)
.|++++|. +++..+..+.++. +|+.|++++|.+. .+| ++.+++|+.|++++|+.++.+|.-.+.|+.|+
T Consensus 237 ~L~l~~N~-l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~ 313 (457)
T 3bz5_A 237 YFDCSVNP-LTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELD 313 (457)
T ss_dssp EEECCSSC-CSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCC
T ss_pred EEEeeCCc-CCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEec
Confidence 66666666 3322222222211 3445555555433 444 46788999999999988888887667888899
Q ss_pred cccccccccccccccccCCCCceEEEeCCCCchhhhhhhhhHHH
Q 003802 664 AEDCTSLETISAFAKLSRSPNIALNFLNCFKLVEDQVSKDNLAV 707 (794)
Q Consensus 664 l~~~~~L~~l~~~~n~~~~~~~~~~~~~~~~L~~L~l~~N~l~~ 707 (794)
+++|++|+.|+++.| ...+. .+.+|++|+.|++++|++++
T Consensus 314 l~~~~~L~~L~L~~N-~l~~l---~l~~l~~L~~L~l~~N~l~~ 353 (457)
T 3bz5_A 314 LSQNPKLVYLYLNNT-ELTEL---DVSHNTKLKSLSCVNAHIQD 353 (457)
T ss_dssp CTTCTTCCEEECTTC-CCSCC---CCTTCTTCSEEECCSSCCCB
T ss_pred hhhcccCCEEECCCC-ccccc---ccccCCcCcEEECCCCCCCC
Confidence 999999999998887 33332 38889999999999998874
No 25
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.97 E-value=2.9e-30 Score=284.45 Aligned_cols=347 Identities=15% Similarity=0.088 Sum_probs=193.0
Q ss_pred CeEEEEEecCCcccccchhhhccCCCCcEEEEcCcccCCCcc-ccccCcceeeeecCCCCCCCCCCCCCCceEEEcCCCC
Q 003802 333 DAVEAIIVDVPEMTELEAKSFSTMSNLRLLEINNLYSSGNLE-YLSNNLRYLKWHEYPFNSLPVSFRPEKLFKLNLCNSR 411 (794)
Q Consensus 333 ~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~~~~~~~~l~~~~~~~~L~~L~L~~n~ 411 (794)
+.++.++++.+.+..+.+..|.++++|++|++++|.+.+.++ ..+. .+++|++|++++|.
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~-------------------~l~~L~~L~Ls~n~ 90 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFR-------------------GLSSLIILKLDYNQ 90 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTT-------------------TCTTCCEEECTTCT
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECccccc-------------------ccccCCEEeCCCCc
Confidence 445666666666666666666666666666666665543321 1221 23455555555555
Q ss_pred cccc-cccccccccCceeccCCCcCccCC-CC--CCCCCCCCEEeccccccccccccc-ccCcccccccccccccccccc
Q 003802 412 IKYL-WKGIKPLKELKFMNLSHSCNLIRT-PD--FTGVPNLERLNLEGCTRLLEVHQS-VGTLKRLILLNLKDCRNLVSF 486 (794)
Q Consensus 412 i~~l-~~~~~~l~~L~~L~L~~n~~~~~~-~~--~~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~n~~~~~~ 486 (794)
++.+ |..+.++++|++|++++|.+.... +. +..+++|++|++++|.+.+..|.. +.++++|++|++++|.+.+..
T Consensus 91 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 170 (455)
T 3v47_A 91 FLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSIC 170 (455)
T ss_dssp TCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCC
T ss_pred cCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccC
Confidence 5544 334555555555555555444321 11 444555555555555544444433 445555555555555544444
Q ss_pred ccccCCC--CCccEEEecCCCCCCCCCcc--------ccCCCCCcEEEccCccCc-ccCccccc---CCCCCEEEcCCCC
Q 003802 487 PKNVCLM--KSLKILCLCGCLKLEKLPQD--------LGEVECLEELDVGGTAIR-QIPPSIVQ---LVNLKIFSLHGCK 552 (794)
Q Consensus 487 ~~~~~~l--~~L~~L~L~~~~~~~~~~~~--------~~~l~~L~~L~l~~~~l~-~l~~~l~~---l~~L~~L~l~~~~ 552 (794)
|..+..+ .+|+.|++++|.+.+..+.. +..+++|++|++++|.++ ..|..+.. .++|+.|++++|.
T Consensus 171 ~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~ 250 (455)
T 3v47_A 171 EEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSY 250 (455)
T ss_dssp TTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCT
T ss_pred hhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecccc
Confidence 4444333 34555555554444322221 123344555555555444 22222222 1444444444442
Q ss_pred CCCCc------------ccccc--chhccccCCCCCCCccccCCCCCCCCCCCEEecCCCCCccCCCCccccCCCCCCeE
Q 003802 553 GQPPK------------ILSSN--FFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAI 618 (794)
Q Consensus 553 ~~~~~------------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L 618 (794)
..... .+... ..+..+.+..+... ......+..+++|++|++++|. +++..|..+..+++|++|
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L 328 (455)
T 3v47_A 251 NMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNE-INKIDDNAFWGLTHLLKL 328 (455)
T ss_dssp TTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCC-EECTTTTTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEE
T ss_pred ccccccchhhhccCcccccccccccCceEEEecCcccc-ccchhhcccCCCCCEEECCCCc-ccccChhHhcCcccCCEE
Confidence 10000 00000 00111111111111 1122347788999999999998 556667788999999999
Q ss_pred eCCCCCCccC-chhhhccCCCCEEecCCCcCCCCCCCCCccccccccccccccccccccccccCCCCceEEEeCCCCchh
Q 003802 619 DLSGNNFFSL-PSSINQLLKLKILCLEKCRNLKSLPELPPEIVFVGAEDCTSLETISAFAKLSRSPNIALNFLNCFKLVE 697 (794)
Q Consensus 619 ~L~~n~l~~l-p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~n~~~~~~~~~~~~~~~~L~~ 697 (794)
+|++|.++.+ |..+..+++|++|+|++|++....|. .+.++++|+.|++.+| .+....+..+.++++|++
T Consensus 329 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~--------~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~ 399 (455)
T 3v47_A 329 NLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQ--------SFLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQK 399 (455)
T ss_dssp ECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTT--------TTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCE
T ss_pred ECCCCccCCcChhHhcCcccCCEEECCCCcccccChh--------hccccccccEEECCCC-ccccCCHhHhccCCcccE
Confidence 9999999866 56788899999999999986544443 3467788888888887 444444445678999999
Q ss_pred hhhhhhhHHHHH
Q 003802 698 DQVSKDNLAVTL 709 (794)
Q Consensus 698 L~l~~N~l~~~~ 709 (794)
|++++|++++..
T Consensus 400 L~l~~N~l~~~~ 411 (455)
T 3v47_A 400 IWLHTNPWDCSC 411 (455)
T ss_dssp EECCSSCBCCCT
T ss_pred EEccCCCcccCC
Confidence 999999997654
No 26
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.96 E-value=8.9e-30 Score=289.12 Aligned_cols=317 Identities=18% Similarity=0.160 Sum_probs=233.1
Q ss_pred eEEEEEecCCcccccchhhhccCCCCcEEEEcCcccCCCccccccCcceeeeecCCCCCCCCCCCCCCceEEEcCCCCcc
Q 003802 334 AVEAIIVDVPEMTELEAKSFSTMSNLRLLEINNLYSSGNLEYLSNNLRYLKWHEYPFNSLPVSFRPEKLFKLNLCNSRIK 413 (794)
Q Consensus 334 ~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~~~~~~~~l~~~~~~~~L~~L~L~~n~i~ 413 (794)
.++.+.+..+.+..++...|.++++|++|++++|.+.+..+..+. .+++|++|+|++|.++
T Consensus 52 ~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-------------------~l~~L~~L~L~~n~l~ 112 (597)
T 3oja_B 52 NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFA-------------------YAHTIQKLYMGFNAIR 112 (597)
T ss_dssp CCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTT-------------------TCTTCCEEECCSSCCC
T ss_pred CceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhc-------------------CCCCCCEEECCCCcCC
Confidence 445555555555555555566666666666665555443332222 4558888888888888
Q ss_pred ccccc-ccccccCceeccCCCcCccCCCC-CCCCCCCCEEecccccccccccccccCccccccccccccccccccccccC
Q 003802 414 YLWKG-IKPLKELKFMNLSHSCNLIRTPD-FTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVC 491 (794)
Q Consensus 414 ~l~~~-~~~l~~L~~L~L~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 491 (794)
.+|.. |.++++|++|+|++|.+...++. |.++++|++|++++|.+.+..|..+..+++|++|++++|.+.+. + +.
T Consensus 113 ~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~--~~ 189 (597)
T 3oja_B 113 YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-D--LS 189 (597)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC-C--GG
T ss_pred CCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc-C--hh
Confidence 77654 68888888888888887766666 68888888888888888777777888888888888888876543 2 45
Q ss_pred CCCCccEEEecCCCCCCCCCccccCCCCCcEEEccCccCcccCcccccCCCCCEEEcCCCCCCCCccccccchhccccCC
Q 003802 492 LMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPPSIVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPN 571 (794)
Q Consensus 492 ~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 571 (794)
.+++|++|++++|.+.+ +...++|+.|++++|.++.+|..+ .++|+.|++++|....
T Consensus 190 ~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n~l~~~~~~~--~~~L~~L~L~~n~l~~---------------- 246 (597)
T 3oja_B 190 LIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTD---------------- 246 (597)
T ss_dssp GCTTCSEEECCSSCCSE-----EECCTTCSEEECCSSCCCEEECSC--CSCCCEEECCSSCCCC----------------
T ss_pred hhhhhhhhhcccCcccc-----ccCCchhheeeccCCccccccccc--CCCCCEEECCCCCCCC----------------
Confidence 67888888888876653 345567888888888888776543 3688888888887321
Q ss_pred CCCCCccccCCCCCCCCCCCEEecCCCCCccCCCCccccCCCCCCeEeCCCCCCccCchhhhccCCCCEEecCCCcCCCC
Q 003802 572 KNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLPSSINQLLKLKILCLEKCRNLKS 651 (794)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~ 651 (794)
.+.+..+++|+.|+|++|. +++..|..++.+++|+.|+|++|.++.+|..+..+++|+.|+|++|++. .
T Consensus 247 ---------~~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~-~ 315 (597)
T 3oja_B 247 ---------TAWLLNYPGLVEVDLSYNE-LEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-H 315 (597)
T ss_dssp ---------CGGGGGCTTCSEEECCSSC-CCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCC-C
T ss_pred ---------ChhhccCCCCCEEECCCCc-cCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCC-c
Confidence 1336677889999999988 5666788888899999999999999888877788899999999998754 2
Q ss_pred CCCCCccccccccccccccccccccccccCCCCceEEEeCCCCchhhhhhhhhHHHHHHHHHHhhhc
Q 003802 652 LPELPPEIVFVGAEDCTSLETISAFAKLSRSPNIALNFLNCFKLVEDQVSKDNLAVTLMKQWLLSYH 718 (794)
Q Consensus 652 ~~~~~~~L~~L~l~~~~~L~~l~~~~n~~~~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~~~~ 718 (794)
+ |+. +..+++|+.|++.+|. +. ...+..+++|+.|++++|++++.....|+....
T Consensus 316 i---~~~-----~~~l~~L~~L~L~~N~-l~---~~~~~~~~~L~~L~l~~N~~~~~~~~~~~~~~~ 370 (597)
T 3oja_B 316 V---ERN-----QPQFDRLENLYLDHNS-IV---TLKLSTHHTLKNLTLSHNDWDCNSLRALFRNVA 370 (597)
T ss_dssp C---GGG-----HHHHTTCSEEECCSSC-CC---CCCCCTTCCCSEEECCSSCEEHHHHHHHTTTCC
T ss_pred c---Ccc-----cccCCCCCEEECCCCC-CC---CcChhhcCCCCEEEeeCCCCCChhHHHHHHHHh
Confidence 3 332 3567788888887772 22 224778999999999999999988888876554
No 27
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.96 E-value=4e-28 Score=256.91 Aligned_cols=281 Identities=16% Similarity=0.183 Sum_probs=227.8
Q ss_pred ccCCCeEEEEEecCCcccccchhhhccCCCCcEEEEcCcccCCCccccccCcceeeeecCCCCCCCCCCCCCCceEEEcC
Q 003802 329 YMGTDAVEAIIVDVPEMTELEAKSFSTMSNLRLLEINNLYSSGNLEYLSNNLRYLKWHEYPFNSLPVSFRPEKLFKLNLC 408 (794)
Q Consensus 329 ~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~~~~~~~~l~~~~~~~~L~~L~L~ 408 (794)
....+.++.+.++.+.+..++. |.++++|++|++++|.+... + .+ ..+++|++|+++
T Consensus 62 ~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~-~-~~-------------------~~l~~L~~L~l~ 118 (347)
T 4fmz_A 62 IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI-S-AL-------------------QNLTNLRELYLN 118 (347)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-G-GG-------------------TTCTTCSEEECT
T ss_pred hhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc-h-HH-------------------cCCCcCCEEECc
Confidence 3456789999999998888776 99999999999999877642 1 11 135689999999
Q ss_pred CCCcccccccccccccCceeccCCCcCccCCCCCCCCCCCCEEecccccccccccccccCcccccccccccccccccccc
Q 003802 409 NSRIKYLWKGIKPLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPK 488 (794)
Q Consensus 409 ~n~i~~l~~~~~~l~~L~~L~L~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 488 (794)
+|.++.++. +..+++|++|++++|......+.+..+++|++|++++|.+....+ +..+++|++|++++|.+.+ ++.
T Consensus 119 ~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~-~~~ 194 (347)
T 4fmz_A 119 EDNISDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIED-ISP 194 (347)
T ss_dssp TSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCC-CGG
T ss_pred CCcccCchh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCcccc-ccc
Confidence 999998876 889999999999999877777779999999999999988665443 8889999999999987654 443
Q ss_pred ccCCCCCccEEEecCCCCCCCCCccccCCCCCcEEEccCccCcccCcccccCCCCCEEEcCCCCCCCCccccccchhccc
Q 003802 489 NVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPPSIVQLVNLKIFSLHGCKGQPPKILSSNFFLSLL 568 (794)
Q Consensus 489 ~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 568 (794)
+..+++|++|++++|.+.+..+ +..+++|++|++++|.++.++. +..+++|++|++++|...
T Consensus 195 -~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~-------------- 256 (347)
T 4fmz_A 195 -LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQIS-------------- 256 (347)
T ss_dssp -GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC--------------
T ss_pred -ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccC--------------
Confidence 7889999999999988776544 8889999999999999998876 888999999999998722
Q ss_pred cCCCCCCCccccCCCCCCCCCCCEEecCCCCCccCCCCccccCCCCCCeEeCCCCCCcc-CchhhhccCCCCEEecCCCc
Q 003802 569 LPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFS-LPSSINQLLKLKILCLEKCR 647 (794)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~-lp~~l~~l~~L~~L~L~~n~ 647 (794)
.++.+..+++|+.|++++|.+.. + ..+..+++|+.|++++|.++. .|..+..+++|++|++++|+
T Consensus 257 -----------~~~~~~~l~~L~~L~l~~n~l~~--~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 322 (347)
T 4fmz_A 257 -----------DINAVKDLTKLKMLNVGSNQISD--I-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH 322 (347)
T ss_dssp -----------CCGGGTTCTTCCEEECCSSCCCC--C-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS
T ss_pred -----------CChhHhcCCCcCEEEccCCccCC--C-hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc
Confidence 12346778899999999998433 3 458889999999999999984 45678999999999999998
Q ss_pred CCCCCCCCCcccccccccccccccccccccc
Q 003802 648 NLKSLPELPPEIVFVGAEDCTSLETISAFAK 678 (794)
Q Consensus 648 ~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~n 678 (794)
+....| +.++++|+.+++.+|
T Consensus 323 l~~~~~----------~~~l~~L~~L~l~~N 343 (347)
T 4fmz_A 323 ITDIRP----------LASLSKMDSADFANQ 343 (347)
T ss_dssp CCCCGG----------GGGCTTCSEESSSCC
T ss_pred cccccC----------hhhhhccceeehhhh
Confidence 544322 466788888888776
No 28
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.96 E-value=2.2e-28 Score=269.35 Aligned_cols=342 Identities=19% Similarity=0.208 Sum_probs=232.9
Q ss_pred CeEEEEEecCCcccccchhhhccCCCCcEEEEcCcccCCCcc-ccccCcceeeeecCCCCCCCCCCCCCCceEEEcCCCC
Q 003802 333 DAVEAIIVDVPEMTELEAKSFSTMSNLRLLEINNLYSSGNLE-YLSNNLRYLKWHEYPFNSLPVSFRPEKLFKLNLCNSR 411 (794)
Q Consensus 333 ~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~~~~~~~~l~~~~~~~~L~~L~L~~n~ 411 (794)
..++.+.+..+.+..++ .+..+++|++|++++|.+.+..+ ..+.+|++|++.++.+..++....+++|++|++++|.
T Consensus 46 ~~l~~L~l~~~~i~~l~--~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~ 123 (466)
T 1o6v_A 46 DQVTTLQADRLGIKSID--GVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQ 123 (466)
T ss_dssp HTCCEEECCSSCCCCCT--TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSC
T ss_pred ccccEEecCCCCCccCc--chhhhcCCCEEECCCCccCCchhhhccccCCEEECCCCccccChhhcCCCCCCEEECCCCC
Confidence 45778888888777665 47889999999999998877654 2345777788877777777664477899999999999
Q ss_pred cccccccccccccCceeccCCCcCccCCCCCCCCCCCCEEecccccccccccccccCccccccccccccccccccccccC
Q 003802 412 IKYLWKGIKPLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVC 491 (794)
Q Consensus 412 i~~l~~~~~~l~~L~~L~L~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 491 (794)
++.++. +..+++|++|++++|.+.. .+.+..+++|++|++++ ..... + .+.++++|++|++++|.+.. ++ .+.
T Consensus 124 l~~~~~-~~~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~l~~-~~~~~-~-~~~~l~~L~~L~l~~n~l~~-~~-~l~ 196 (466)
T 1o6v_A 124 ITDIDP-LKNLTNLNRLELSSNTISD-ISALSGLTSLQQLSFGN-QVTDL-K-PLANLTTLERLDISSNKVSD-IS-VLA 196 (466)
T ss_dssp CCCCGG-GTTCTTCSEEEEEEEEECC-CGGGTTCTTCSEEEEEE-SCCCC-G-GGTTCTTCCEEECCSSCCCC-CG-GGG
T ss_pred CCCChH-HcCCCCCCEEECCCCccCC-ChhhccCCcccEeecCC-cccCc-h-hhccCCCCCEEECcCCcCCC-Ch-hhc
Confidence 988875 8889999999999987654 44588888999999864 33332 2 38888899999999887543 33 477
Q ss_pred CCCCccEEEecCCCCCCCCCccccCCCCCcEEEccCccCcccCcccccCCCCCEEEcCCCCCCCCccccccchhccccCC
Q 003802 492 LMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPPSIVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPN 571 (794)
Q Consensus 492 ~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 571 (794)
.+++|++|++++|.+.+..| ++.+++|+.|++++|.++.++ .+..+++|+.|++++|.......+.....+..+.+.
T Consensus 197 ~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~ 273 (466)
T 1o6v_A 197 KLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLG 273 (466)
T ss_dssp GCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECC
T ss_pred cCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccch-hhhcCCCCCEEECCCCccccchhhhcCCCCCEEECC
Confidence 88899999999888776554 777888999999999888774 577888999999988873322223333333333333
Q ss_pred CCCCCccccCCCCCCCCCCCEEecCCCCCccCCCCccccCCCCCCeEeCCCCCCccCchhhhccCCCCEEecCCCcCCCC
Q 003802 572 KNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLPSSINQLLKLKILCLEKCRNLKS 651 (794)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~ 651 (794)
.+..... +.+..+++|+.|++++|.+ ++ ++. +..+++|+.|++++|.++.++. +..+++|+.|++++|+...
T Consensus 274 ~n~l~~~---~~~~~l~~L~~L~L~~n~l-~~-~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~- 345 (466)
T 1o6v_A 274 ANQISNI---SPLAGLTALTNLELNENQL-ED-ISP-ISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNNKVSD- 345 (466)
T ss_dssp SSCCCCC---GGGTTCTTCSEEECCSSCC-SC-CGG-GGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSSCCCC-
T ss_pred CCccCcc---ccccCCCccCeEEcCCCcc-cC-chh-hcCCCCCCEEECcCCcCCCchh-hccCccCCEeECCCCccCC-
Confidence 3333221 2255566666666666663 22 222 5566666666666666665553 5666666666666665332
Q ss_pred CCCCCccccccccccccccccccccccccCCCCceEEEeCCCCchhhhhhhhhHH
Q 003802 652 LPELPPEIVFVGAEDCTSLETISAFAKLSRSPNIALNFLNCFKLVEDQVSKDNLA 706 (794)
Q Consensus 652 ~~~~~~~L~~L~l~~~~~L~~l~~~~n~~~~~~~~~~~~~~~~L~~L~l~~N~l~ 706 (794)
++ .+.+|++|+.|++.+| ...+..+ +..+++|+.|++++|.++
T Consensus 346 ~~---------~l~~l~~L~~L~l~~n-~l~~~~~--~~~l~~L~~L~l~~n~~~ 388 (466)
T 1o6v_A 346 VS---------SLANLTNINWLSAGHN-QISDLTP--LANLTRITQLGLNDQAWT 388 (466)
T ss_dssp CG---------GGTTCTTCCEEECCSS-CCCBCGG--GTTCTTCCEEECCCEEEE
T ss_pred ch---------hhccCCCCCEEeCCCC-ccCccch--hhcCCCCCEEeccCCccc
Confidence 11 2355666666666655 3333333 566777777777776654
No 29
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.96 E-value=7.2e-29 Score=280.30 Aligned_cols=363 Identities=17% Similarity=0.120 Sum_probs=226.1
Q ss_pred CeEEEEEecCCcccccchhhhccCCCCcEEEEcCcccCCCccccc---cCcceeeeecCCCCCCCCCCCCCCceEEEcCC
Q 003802 333 DAVEAIIVDVPEMTELEAKSFSTMSNLRLLEINNLYSSGNLEYLS---NNLRYLKWHEYPFNSLPVSFRPEKLFKLNLCN 409 (794)
Q Consensus 333 ~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~---~~l~~L~~~~~~~~~l~~~~~~~~L~~L~L~~ 409 (794)
+.++.++++.|.+..+++..|.++++|++|++++|.+.+..+..+ .+|++|++.++.+..+|.. .+++|++|++++
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~l~~L~~L~Ls~ 130 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC-PMASLRHLDLSF 130 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC-CCTTCSEEECCS
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc-ccccCCEEECCC
Confidence 678899999999999998999999999999999999887766554 4677888888888888877 788999999999
Q ss_pred CCccccc--ccccccccCceeccCCCcCccCCCCCCCCCCC--CEEecccccc--cccccccccC---------------
Q 003802 410 SRIKYLW--KGIKPLKELKFMNLSHSCNLIRTPDFTGVPNL--ERLNLEGCTR--LLEVHQSVGT--------------- 468 (794)
Q Consensus 410 n~i~~l~--~~~~~l~~L~~L~L~~n~~~~~~~~~~~l~~L--~~L~l~~~~~--~~~~~~~~~~--------------- 468 (794)
|.++.++ ..+.++++|++|++++|.+.. ..+..+++| ++|++++|.+ .+..|..+..
T Consensus 131 N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~ 208 (562)
T 3a79_B 131 NDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ--LDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSL 208 (562)
T ss_dssp SCCSBCCCCGGGGGCTTCCEEEEECSBCCT--TTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSC
T ss_pred CCccccCchHhhcccCcccEEecCCCcccc--CchhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccc
Confidence 9998765 679999999999999987765 235555555 9999999877 5544444433
Q ss_pred -----------cccccccccccccc----------------------------cc----ccccccCCCCCccEEEecCCC
Q 003802 469 -----------LKRLILLNLKDCRN----------------------------LV----SFPKNVCLMKSLKILCLCGCL 505 (794)
Q Consensus 469 -----------l~~L~~L~l~~n~~----------------------------~~----~~~~~~~~l~~L~~L~L~~~~ 505 (794)
+++|+.|++++|.. .+ .++..+ ..++|++|++++|.
T Consensus 209 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~-~~~~L~~L~l~~n~ 287 (562)
T 3a79_B 209 FSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFF-WPRPVEYLNIYNLT 287 (562)
T ss_dssp CCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHH-TTSSEEEEEEEEEE
T ss_pred hhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhh-hcccccEEEEeccE
Confidence 33445554444320 00 000000 11255555555555
Q ss_pred CCCCCCccc-----cCCC--------------------------CCcEEEccCccCcccCcccccCCCCCEEEcCCCCCC
Q 003802 506 KLEKLPQDL-----GEVE--------------------------CLEELDVGGTAIRQIPPSIVQLVNLKIFSLHGCKGQ 554 (794)
Q Consensus 506 ~~~~~~~~~-----~~l~--------------------------~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~~ 554 (794)
+.+.+|..+ .+++ +|+.|++++|.+..++. ...+++|++|++++|...
T Consensus 288 l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~l~~L~~L~l~~n~l~ 366 (562)
T 3a79_B 288 ITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVC-PPSPSSFTFLNFTQNVFT 366 (562)
T ss_dssp ECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCC-CSSCCCCCEEECCSSCCC
T ss_pred eeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccC-ccCCCCceEEECCCCccc
Confidence 554444433 2222 23333444433332210 134555555555555521
Q ss_pred --CCccccccchhccccCCCCCCCccccC-CCCCCCCCCCEEecCCCCCccCCCC-ccccCCCCCCeEeCCCCCCc-cCc
Q 003802 555 --PPKILSSNFFLSLLLPNKNSDSMCLSF-PRFTGLSSLQTLDLSDCNLLEGAIP-SDIGSLFSLEAIDLSGNNFF-SLP 629 (794)
Q Consensus 555 --~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~~l~~L~~L~L~~n~l~-~lp 629 (794)
.+..+.....+..+.+..+........ ..+.++++|+.|++++|. +++.+| ..+..+++|++|++++|+++ .+|
T Consensus 367 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 445 (562)
T 3a79_B 367 DSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNS-LNSHAYDRTCAWAESILVLNLSSNMLTGSVF 445 (562)
T ss_dssp TTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSC-CBSCCSSCCCCCCTTCCEEECCSSCCCGGGG
T ss_pred cchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCc-CCCccChhhhcCcccCCEEECCCCCCCcchh
Confidence 222233232333333333332221111 136677788888888887 444333 34677788888888888776 344
Q ss_pred hhhhccCCCCEEecCCCcCCCCCCCCCccccccccccccccccccccccccCCCCceEEEeCCCCchhhhhhhhhHHHHH
Q 003802 630 SSINQLLKLKILCLEKCRNLKSLPELPPEIVFVGAEDCTSLETISAFAKLSRSPNIALNFLNCFKLVEDQVSKDNLAVTL 709 (794)
Q Consensus 630 ~~l~~l~~L~~L~L~~n~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~n~~~~~~~~~~~~~~~~L~~L~l~~N~l~~~~ 709 (794)
..+. ++|+.|+|++|++. .+|. . +.++++|+.|++.+| .........+..+++|+.|++++|++.+..
T Consensus 446 ~~l~--~~L~~L~L~~N~l~-~ip~---~-----~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c 513 (562)
T 3a79_B 446 RCLP--PKVKVLDLHNNRIM-SIPK---D-----VTHLQALQELNVASN-QLKSVPDGVFDRLTSLQYIWLHDNPWDCTC 513 (562)
T ss_dssp SSCC--TTCSEEECCSSCCC-CCCT---T-----TTSSCCCSEEECCSS-CCCCCCTTSTTTCTTCCCEECCSCCBCCCH
T ss_pred hhhc--CcCCEEECCCCcCc-ccCh---h-----hcCCCCCCEEECCCC-CCCCCCHHHHhcCCCCCEEEecCCCcCCCc
Confidence 3222 57888888887633 3332 2 246788888888887 333333334788999999999999997654
Q ss_pred HHHH
Q 003802 710 MKQW 713 (794)
Q Consensus 710 ~~~~ 713 (794)
...|
T Consensus 514 ~~~~ 517 (562)
T 3a79_B 514 PGIR 517 (562)
T ss_dssp HHHH
T ss_pred chHH
Confidence 4433
No 30
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.96 E-value=2.1e-28 Score=276.46 Aligned_cols=314 Identities=16% Similarity=0.137 Sum_probs=218.7
Q ss_pred ccCCCeEEEEEecCCcccccchhhhccCCCCcEEEEcCcccCCCccccccCcceeeeecCCCCCCC--CCC-CCCCceEE
Q 003802 329 YMGTDAVEAIIVDVPEMTELEAKSFSTMSNLRLLEINNLYSSGNLEYLSNNLRYLKWHEYPFNSLP--VSF-RPEKLFKL 405 (794)
Q Consensus 329 ~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~~~~~~~~l~--~~~-~~~~L~~L 405 (794)
......++.++++.|.+..+.+..|.++++|++|++++|.+.......+.+|+.|++.++.+..++ ..+ .+++|++|
T Consensus 72 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L 151 (562)
T 3a79_B 72 ISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFL 151 (562)
T ss_dssp TTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSCCCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEE
T ss_pred hccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCccccccCCEEECCCCCccccCchHhhcccCcccEE
Confidence 456688999999999999999999999999999999999988654456778999999999988876 344 78999999
Q ss_pred EcCCCCcccccccccccccC--ceeccCCCcC--ccCCCC-CC--------------------------CCCCCCEEecc
Q 003802 406 NLCNSRIKYLWKGIKPLKEL--KFMNLSHSCN--LIRTPD-FT--------------------------GVPNLERLNLE 454 (794)
Q Consensus 406 ~L~~n~i~~l~~~~~~l~~L--~~L~L~~n~~--~~~~~~-~~--------------------------~l~~L~~L~l~ 454 (794)
++++|.++.. .+..+++| ++|++++|.+ ....+. +. .+++|+.|+++
T Consensus 152 ~L~~n~l~~~--~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~ 229 (562)
T 3a79_B 152 GLSAAKFRQL--DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIK 229 (562)
T ss_dssp EEECSBCCTT--TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEE
T ss_pred ecCCCccccC--chhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEeccc
Confidence 9999999863 46666666 9999999987 443332 22 23344444444
Q ss_pred cccc----------------------------cc----cccccccCcccccccccccccccccccccc------------
Q 003802 455 GCTR----------------------------LL----EVHQSVGTLKRLILLNLKDCRNLVSFPKNV------------ 490 (794)
Q Consensus 455 ~~~~----------------------------~~----~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~------------ 490 (794)
+|.. .+ .++.. ...++|++|++++|.+.+.+|..+
T Consensus 230 ~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~ 308 (562)
T 3a79_B 230 LNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQF-FWPRPVEYLNIYNLTITERIDREEFTYSETALKSLM 308 (562)
T ss_dssp CCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHH-HTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEE
T ss_pred ccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHh-hhcccccEEEEeccEeeccccchhhhcccccchhee
Confidence 4310 00 00000 011245555555554444444333
Q ss_pred -----------------------------------------CCCCCccEEEecCCCCCCCCCccccCCCCCcEEEccCcc
Q 003802 491 -----------------------------------------CLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTA 529 (794)
Q Consensus 491 -----------------------------------------~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 529 (794)
..+++|++|++++|.+.+..|..++++++|+.|++++|.
T Consensus 309 ~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 388 (562)
T 3a79_B 309 IEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNG 388 (562)
T ss_dssp EEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSC
T ss_pred hhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCC
Confidence 455666666666666666566666666666666666666
Q ss_pred CcccC---cccccCCCCCEEEcCCCCCCCCccccccchhccccCCCCCCCccccCCCCCCCCCCCEEecCCCCCccCCCC
Q 003802 530 IRQIP---PSIVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIP 606 (794)
Q Consensus 530 l~~l~---~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~ 606 (794)
++.++ ..+..+++|++|++++|. .........+..+++|+.|++++|. +++..|
T Consensus 389 l~~~~~~~~~~~~l~~L~~L~l~~N~----------------------l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~ 445 (562)
T 3a79_B 389 LKNFFKVALMTKNMSSLETLDVSLNS----------------------LNSHAYDRTCAWAESILVLNLSSNM-LTGSVF 445 (562)
T ss_dssp CCBTTHHHHTTTTCTTCCEEECTTSC----------------------CBSCCSSCCCCCCTTCCEEECCSSC-CCGGGG
T ss_pred cCCcccchhhhcCCCCCCEEECCCCc----------------------CCCccChhhhcCcccCCEEECCCCC-CCcchh
Confidence 66443 345566666666666665 2211222347788999999999999 555555
Q ss_pred ccccCCCCCCeEeCCCCCCccCchhhhccCCCCEEecCCCcCCCCCCCCCcccccccccccccccccccccc
Q 003802 607 SDIGSLFSLEAIDLSGNNFFSLPSSINQLLKLKILCLEKCRNLKSLPELPPEIVFVGAEDCTSLETISAFAK 678 (794)
Q Consensus 607 ~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~n 678 (794)
..+. ++|+.|+|++|+++.+|..+..+++|++|+|++|++. .+|. . .+.++++|+.+++.+|
T Consensus 446 ~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~-~l~~---~----~~~~l~~L~~L~l~~N 507 (562)
T 3a79_B 446 RCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLK-SVPD---G----VFDRLTSLQYIWLHDN 507 (562)
T ss_dssp SSCC--TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCC-CCCT---T----STTTCTTCCCEECCSC
T ss_pred hhhc--CcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCC-CCCH---H----HHhcCCCCCEEEecCC
Confidence 5443 7999999999999999998889999999999999854 4443 2 2577899999999888
No 31
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.96 E-value=4e-29 Score=295.31 Aligned_cols=316 Identities=19% Similarity=0.170 Sum_probs=181.9
Q ss_pred cCCCeEEEEEecCC-cccccchhhhccCCCCcEEEEcCcccCCCcccccc---CcceeeeecCCCCC-CCCC--C-CCCC
Q 003802 330 MGTDAVEAIIVDVP-EMTELEAKSFSTMSNLRLLEINNLYSSGNLEYLSN---NLRYLKWHEYPFNS-LPVS--F-RPEK 401 (794)
Q Consensus 330 ~~~~~~~~l~l~~~-~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~---~l~~L~~~~~~~~~-l~~~--~-~~~~ 401 (794)
.....++.++++.+ ....+++.+|.++++|++|++++|.+.+..|..+. +|+.|++.+|.+.. ++.. + .+++
T Consensus 45 ~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~ 124 (844)
T 3j0a_A 45 PFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKA 124 (844)
T ss_dssp SSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSS
T ss_pred cccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCC
Confidence 45567888888887 55567788888888899999888888877676665 44555555555543 2222 2 6778
Q ss_pred ceEEEcCCCCccccc--ccccccccCceeccCCCcCccCCCC-CCCC--CCCCEEecccccccccccccccCccc-----
Q 003802 402 LFKLNLCNSRIKYLW--KGIKPLKELKFMNLSHSCNLIRTPD-FTGV--PNLERLNLEGCTRLLEVHQSVGTLKR----- 471 (794)
Q Consensus 402 L~~L~L~~n~i~~l~--~~~~~l~~L~~L~L~~n~~~~~~~~-~~~l--~~L~~L~l~~~~~~~~~~~~~~~l~~----- 471 (794)
|++|++++|.++.++ ..+.++++|++|++++|.+....+. +..+ ++|+.|++++|.+.+..|..++.+++
T Consensus 125 L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~ 204 (844)
T 3j0a_A 125 LTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNM 204 (844)
T ss_dssp CCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTC
T ss_pred CCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccC
Confidence 888888888888663 4588888888888888877665443 4444 56666666666655555554444443
Q ss_pred -cccccccccccccccccccC------------------------------------C--CCCccEEEecCCCCCCCCCc
Q 003802 472 -LILLNLKDCRNLVSFPKNVC------------------------------------L--MKSLKILCLCGCLKLEKLPQ 512 (794)
Q Consensus 472 -L~~L~l~~n~~~~~~~~~~~------------------------------------~--l~~L~~L~L~~~~~~~~~~~ 512 (794)
|++|++++|.+.+..+..+. . .++|+.|++++|.+.+..+.
T Consensus 205 ~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~ 284 (844)
T 3j0a_A 205 VLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSR 284 (844)
T ss_dssp CBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSC
T ss_pred ceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChh
Confidence 56666665543332222111 0 14555566655555555555
Q ss_pred cccCCCCCcEEEccCccCccc-CcccccCCCCCEEEcCCCC--CCCCccccccchhccccCCCCCCCccccCCCCCCCCC
Q 003802 513 DLGEVECLEELDVGGTAIRQI-PPSIVQLVNLKIFSLHGCK--GQPPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSS 589 (794)
Q Consensus 513 ~~~~l~~L~~L~l~~~~l~~l-~~~l~~l~~L~~L~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 589 (794)
.|..+++|+.|++++|.++.+ |..+..+++|++|++++|. ...+..+.....+..+.+..|... ......+.++++
T Consensus 285 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~~~l~~ 363 (844)
T 3j0a_A 285 VFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIA-IIQDQTFKFLEK 363 (844)
T ss_dssp CSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCC-CCCSSCSCSCCC
T ss_pred hhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCC-ccChhhhcCCCC
Confidence 555556666666666555533 3345555566666665555 222333333333333333333322 111223555666
Q ss_pred CCEEecCCCCCccC-----------------CCCccccCCCCCCeEeCCCCCCccCch--hhhccCCCCEEecCCCcCC
Q 003802 590 LQTLDLSDCNLLEG-----------------AIPSDIGSLFSLEAIDLSGNNFFSLPS--SINQLLKLKILCLEKCRNL 649 (794)
Q Consensus 590 L~~L~l~~n~~~~~-----------------~~~~~~~~l~~L~~L~L~~n~l~~lp~--~l~~l~~L~~L~L~~n~~~ 649 (794)
|+.|++++|.+..- .+|.. ..+++.|++++|+++.++. .+..+++|+.|+|++|++.
T Consensus 364 L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~ 439 (844)
T 3j0a_A 364 LQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFS 439 (844)
T ss_dssp CCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCC
T ss_pred CCEEECCCCCCCcccCCCCcchhccCCCCccccccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCccc
Confidence 66666666653210 12211 2344555555555554332 2456777888888877754
No 32
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.96 E-value=4.2e-28 Score=268.56 Aligned_cols=293 Identities=20% Similarity=0.228 Sum_probs=244.0
Q ss_pred CeEEEEEecCCcccccchhhhccCCCCcEEEEcCcccCCCccccc---cCcceeeeecCCCCCCCCCC--CCCCceEEEc
Q 003802 333 DAVEAIIVDVPEMTELEAKSFSTMSNLRLLEINNLYSSGNLEYLS---NNLRYLKWHEYPFNSLPVSF--RPEKLFKLNL 407 (794)
Q Consensus 333 ~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~---~~l~~L~~~~~~~~~l~~~~--~~~~L~~L~L 407 (794)
..++.++++.|.+..+.+..|.++++|++|++++|.+.+..+..+ .+|+.|++.++.+..++... .+++|++|++
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 111 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI 111 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence 467889999999999999999999999999999998887766555 46777888888888777643 6789999999
Q ss_pred CCCCcccc-cccccccccCceeccCCCcCccCCCC-CCCCCCCCEEecccccccccccccccCccccccccccccccccc
Q 003802 408 CNSRIKYL-WKGIKPLKELKFMNLSHSCNLIRTPD-FTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVS 485 (794)
Q Consensus 408 ~~n~i~~l-~~~~~~l~~L~~L~L~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 485 (794)
++|.+..+ +..+..+++|++|++++|.+....+. |.++++|++|++++|.+....+..+..+++|+.|++++|.+.+.
T Consensus 112 s~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~ 191 (477)
T 2id5_A 112 SENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAI 191 (477)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEE
T ss_pred CCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEe
Confidence 99999877 45588999999999999988777665 88899999999999887776667788999999999999888777
Q ss_pred cccccCCCCCccEEEecCCCCCCCCCccccCCCCCcEEEccCccCcccCc-ccccCCCCCEEEcCCCCCCCCccccccch
Q 003802 486 FPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPP-SIVQLVNLKIFSLHGCKGQPPKILSSNFF 564 (794)
Q Consensus 486 ~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 564 (794)
.+..+..+++|++|++++|...+.+|.......+|+.|++++|.++.+|. .+..+++|+.|++++|...
T Consensus 192 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~---------- 261 (477)
T 2id5_A 192 RDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS---------- 261 (477)
T ss_dssp CTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCC----------
T ss_pred ChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCC----------
Confidence 77788899999999999998888888777777789999999999998884 5788999999999988722
Q ss_pred hccccCCCCCCCccccCCCCCCCCCCCEEecCCCCCccCCCCccccCCCCCCeEeCCCCCCccCchh-hhccCCCCEEec
Q 003802 565 LSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLPSS-INQLLKLKILCL 643 (794)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~-l~~l~~L~~L~L 643 (794)
......+..+++|+.|++++|. +++..|..+..+++|+.|+|++|+++.+|.. +..+++|+.|+|
T Consensus 262 -------------~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 327 (477)
T 2id5_A 262 -------------TIEGSMLHELLRLQEIQLVGGQ-LAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLIL 327 (477)
T ss_dssp -------------EECTTSCTTCTTCCEEECCSSC-CSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEEC
T ss_pred -------------ccChhhccccccCCEEECCCCc-cceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEc
Confidence 1112347788899999999998 6666788889999999999999999987754 578899999999
Q ss_pred CCCcCC
Q 003802 644 EKCRNL 649 (794)
Q Consensus 644 ~~n~~~ 649 (794)
++|+..
T Consensus 328 ~~N~l~ 333 (477)
T 2id5_A 328 DSNPLA 333 (477)
T ss_dssp CSSCEE
T ss_pred cCCCcc
Confidence 999854
No 33
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.96 E-value=2.6e-29 Score=276.76 Aligned_cols=345 Identities=17% Similarity=0.108 Sum_probs=254.9
Q ss_pred CCCcEEEEcCcccCCCccccccCcceeeeecCCCCCCCCCCCCCCceEEEcCCCCcc-cc-cccccccccCceeccCCCc
Q 003802 357 SNLRLLEINNLYSSGNLEYLSNNLRYLKWHEYPFNSLPVSFRPEKLFKLNLCNSRIK-YL-WKGIKPLKELKFMNLSHSC 434 (794)
Q Consensus 357 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~~~~~~~~l~~~~~~~~L~~L~L~~n~i~-~l-~~~~~~l~~L~~L~L~~n~ 434 (794)
++|++|++++|.+.+..+..+. .+++|++|++++|.+. .+ +..|.++++|++|++++|.
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~-------------------~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~ 90 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFS-------------------RLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTS-------------------SCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCT
T ss_pred CccCEEEecCCccCcCChhHhc-------------------cCccccEEECcCCcccceECcccccccccCCEEeCCCCc
Confidence 5566666666655544333333 4558999999999986 55 4569999999999999999
Q ss_pred CccCCCC-CCCCCCCCEEeccccccccccccc--ccCccccccccccccccccccccc-cCCCCCccEEEecCCCCCCCC
Q 003802 435 NLIRTPD-FTGVPNLERLNLEGCTRLLEVHQS--VGTLKRLILLNLKDCRNLVSFPKN-VCLMKSLKILCLCGCLKLEKL 510 (794)
Q Consensus 435 ~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~--~~~l~~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~L~~~~~~~~~ 510 (794)
+....+. |.++++|++|++++|.+.+..+.. +..+++|++|++++|.+.+..|.. +.++++|++|++++|.+.+..
T Consensus 91 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 170 (455)
T 3v47_A 91 FLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSIC 170 (455)
T ss_dssp TCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCC
T ss_pred cCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccC
Confidence 8888665 999999999999999988766555 899999999999999988777776 889999999999999999988
Q ss_pred CccccCC--CCCcEEEccCccCcccCcc---------cccCCCCCEEEcCCCCCCC--Ccccccc---chhccccCCCCC
Q 003802 511 PQDLGEV--ECLEELDVGGTAIRQIPPS---------IVQLVNLKIFSLHGCKGQP--PKILSSN---FFLSLLLPNKNS 574 (794)
Q Consensus 511 ~~~~~~l--~~L~~L~l~~~~l~~l~~~---------l~~l~~L~~L~l~~~~~~~--~~~~~~~---~~~~~~~~~~~~ 574 (794)
+..+..+ .+|+.|++++|.+..++.. +..+++|++|++++|.... +..+... ..+..+....+.
T Consensus 171 ~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~ 250 (455)
T 3v47_A 171 EEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSY 250 (455)
T ss_dssp TTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCT
T ss_pred hhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecccc
Confidence 8888776 7899999999999876542 3456899999999997321 1111110 111111111111
Q ss_pred CCcc---------ccCCCCC--CCCCCCEEecCCCCCccCCCCccccCCCCCCeEeCCCCCCccC-chhhhccCCCCEEe
Q 003802 575 DSMC---------LSFPRFT--GLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSL-PSSINQLLKLKILC 642 (794)
Q Consensus 575 ~~~~---------~~~~~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~ 642 (794)
.... .....+. ..++|+.|++++|. +.+..|..++.+++|++|+|++|.++.+ |..+..+++|++|+
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 329 (455)
T 3v47_A 251 NMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSK-IFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLN 329 (455)
T ss_dssp TTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSC-CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred ccccccchhhhccCcccccccccccCceEEEecCcc-ccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEE
Confidence 1000 0001122 23689999999999 6667888899999999999999999966 66889999999999
Q ss_pred cCCCcCCCCCCCCCccccccccccccccccccccccccCCCCceEEEeCCCCchhhhhhhhhHHHHHHHHHHhhhccccc
Q 003802 643 LEKCRNLKSLPELPPEIVFVGAEDCTSLETISAFAKLSRSPNIALNFLNCFKLVEDQVSKDNLAVTLMKQWLLSYHSLVA 722 (794)
Q Consensus 643 L~~n~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~n~~~~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~~~~~l~~ 722 (794)
|++|.+....|. .+.++++|+.|++++| ......+..+.++++|++|++++|++++ +....+..++.+..
T Consensus 330 Ls~N~l~~~~~~--------~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~ 399 (455)
T 3v47_A 330 LSQNFLGSIDSR--------MFENLDKLEVLDLSYN-HIRALGDQSFLGLPNLKELALDTNQLKS-VPDGIFDRLTSLQK 399 (455)
T ss_dssp CCSSCCCEECGG--------GGTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCE
T ss_pred CCCCccCCcChh--------HhcCcccCCEEECCCC-cccccChhhccccccccEEECCCCcccc-CCHhHhccCCcccE
Confidence 999986443332 3567889999999887 4444445567899999999999999874 22333445556666
Q ss_pred cCccccccc
Q 003802 723 WTDSTRRFN 731 (794)
Q Consensus 723 ~~~~~~~~~ 731 (794)
+....+.+.
T Consensus 400 L~l~~N~l~ 408 (455)
T 3v47_A 400 IWLHTNPWD 408 (455)
T ss_dssp EECCSSCBC
T ss_pred EEccCCCcc
Confidence 665555444
No 34
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.96 E-value=4.6e-29 Score=281.85 Aligned_cols=358 Identities=17% Similarity=0.177 Sum_probs=238.6
Q ss_pred cCCCeEEEEEecCCcccccchhhhccCCCCcEEEEcCcccCCCccccc---cCcceeeeecCCCCCC--CCCC-CCCCce
Q 003802 330 MGTDAVEAIIVDVPEMTELEAKSFSTMSNLRLLEINNLYSSGNLEYLS---NNLRYLKWHEYPFNSL--PVSF-RPEKLF 403 (794)
Q Consensus 330 ~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~---~~l~~L~~~~~~~~~l--~~~~-~~~~L~ 403 (794)
.....++.++++.|.+..+++..|.++++|++|++++|.+.+..+..+ .+|++|++.++.+..+ +..+ .+++|+
T Consensus 47 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~ 126 (549)
T 2z81_A 47 RACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQ 126 (549)
T ss_dssp SSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCC
T ss_pred hcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCcc
Confidence 456788999999999999999999999999999999999988877644 4667777777777644 3334 678999
Q ss_pred EEEcCCCC-ccccc-ccccccccCceeccCCCcCccCCCC-CCCCCCCCEEeccccccccccccc-ccCccccccccccc
Q 003802 404 KLNLCNSR-IKYLW-KGIKPLKELKFMNLSHSCNLIRTPD-FTGVPNLERLNLEGCTRLLEVHQS-VGTLKRLILLNLKD 479 (794)
Q Consensus 404 ~L~L~~n~-i~~l~-~~~~~l~~L~~L~L~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~ 479 (794)
+|++++|. +..+| ..+.++++|++|++++|.+....+. +..+++|++|++++|... .+|.. +..+++|++|++++
T Consensus 127 ~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~ 205 (549)
T 2z81_A 127 TLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRD 205 (549)
T ss_dssp EEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEES
T ss_pred EEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccC
Confidence 99999998 67776 4689999999999999988776655 777666666666665432 22222 23455555555555
Q ss_pred ccccccc--c-----------------------------cc------------------------------cC-------
Q 003802 480 CRNLVSF--P-----------------------------KN------------------------------VC------- 491 (794)
Q Consensus 480 n~~~~~~--~-----------------------------~~------------------------------~~------- 491 (794)
|.+.+.. | .. +.
T Consensus 206 n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~ 285 (549)
T 2z81_A 206 TNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVET 285 (549)
T ss_dssp CBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCE
T ss_pred CccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhccccc
Confidence 5443310 0 00 00
Q ss_pred ----------------------CCCCccEEEecCCCCCCCCCccc-cCCCCCcEEEccCccCcc-cC---cccccCCCCC
Q 003802 492 ----------------------LMKSLKILCLCGCLKLEKLPQDL-GEVECLEELDVGGTAIRQ-IP---PSIVQLVNLK 544 (794)
Q Consensus 492 ----------------------~l~~L~~L~L~~~~~~~~~~~~~-~~l~~L~~L~l~~~~l~~-l~---~~l~~l~~L~ 544 (794)
.+.+|++|++++|.+. .+|..+ ..+++|+.|++++|.++. +| ..++.+++|+
T Consensus 286 L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~ 364 (549)
T 2z81_A 286 VTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQ 364 (549)
T ss_dssp EEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCC
T ss_pred ccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCc
Confidence 1134555555555433 345444 568889999999988874 32 3367788899
Q ss_pred EEEcCCCCCCCC----ccccccchhccccCCCCCCCccccCC-CCCCCCCCCEEecCCCCCccCCCCccccCCCCCCeEe
Q 003802 545 IFSLHGCKGQPP----KILSSNFFLSLLLPNKNSDSMCLSFP-RFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAID 619 (794)
Q Consensus 545 ~L~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ 619 (794)
+|++++|..... ..+.....+..+.+..|... .++ .+..+++|++|++++|.+.. +|..+ .++|++|+
T Consensus 365 ~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~---~lp~~~~~~~~L~~L~Ls~N~l~~--l~~~~--~~~L~~L~ 437 (549)
T 2z81_A 365 TLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH---PMPDSCQWPEKMRFLNLSSTGIRV--VKTCI--PQTLEVLD 437 (549)
T ss_dssp EEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC---CCCSCCCCCTTCCEEECTTSCCSC--CCTTS--CTTCSEEE
T ss_pred EEEccCCcccccccchhhhhcCCCCCEEECCCCCCc---cCChhhcccccccEEECCCCCccc--ccchh--cCCceEEE
Confidence 999988873221 11223333333444444333 122 35566777777777777432 33332 25777777
Q ss_pred CCCCCCccCchhhhccCCCCEEecCCCcCCCCCCCCCccccccccccccccccccccccccCCCCceEEEeCCCCchhhh
Q 003802 620 LSGNNFFSLPSSINQLLKLKILCLEKCRNLKSLPELPPEIVFVGAEDCTSLETISAFAKLSRSPNIALNFLNCFKLVEDQ 699 (794)
Q Consensus 620 L~~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~n~~~~~~~~~~~~~~~~L~~L~ 699 (794)
+++|+++.++ ..+++|++|+|++|++. .+|. ...+++|+.|++++| ......+..+.++++|+.|+
T Consensus 438 Ls~N~l~~~~---~~l~~L~~L~Ls~N~l~-~ip~---------~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~ 503 (549)
T 2z81_A 438 VSNNNLDSFS---LFLPRLQELYISRNKLK-TLPD---------ASLFPVLLVMKISRN-QLKSVPDGIFDRLTSLQKIW 503 (549)
T ss_dssp CCSSCCSCCC---CCCTTCCEEECCSSCCS-SCCC---------GGGCTTCCEEECCSS-CCCCCCTTGGGGCTTCCEEE
T ss_pred CCCCChhhhc---ccCChhcEEECCCCccC-cCCC---------cccCccCCEEecCCC-ccCCcCHHHHhcCcccCEEE
Confidence 7777777655 46778888888887643 4442 134688889988887 55555666688999999999
Q ss_pred hhhhhHHHHHH
Q 003802 700 VSKDNLAVTLM 710 (794)
Q Consensus 700 l~~N~l~~~~~ 710 (794)
+++|++++...
T Consensus 504 l~~N~~~~~~~ 514 (549)
T 2z81_A 504 LHTNPWDCSCP 514 (549)
T ss_dssp CCSSCBCCCHH
T ss_pred ecCCCccCCCc
Confidence 99999976544
No 35
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.95 E-value=1.6e-27 Score=262.51 Aligned_cols=342 Identities=19% Similarity=0.180 Sum_probs=262.3
Q ss_pred ccCCCCcEEEEcCcccCCCcc-ccccCcceeeeecCCCCCCCCCCCCCCceEEEcCCCCcccccccccccccCceeccCC
Q 003802 354 STMSNLRLLEINNLYSSGNLE-YLSNNLRYLKWHEYPFNSLPVSFRPEKLFKLNLCNSRIKYLWKGIKPLKELKFMNLSH 432 (794)
Q Consensus 354 ~~~~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~~~~~~~~l~~~~~~~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~ 432 (794)
..+++++.|+++++.+..... ..+.+|+.|++.++.+..++....+++|++|++++|.++.++. +..+++|++|++++
T Consensus 43 ~~l~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~ 121 (466)
T 1o6v_A 43 TDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFN 121 (466)
T ss_dssp HHHHTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCS
T ss_pred hHhccccEEecCCCCCccCcchhhhcCCCEEECCCCccCCchhhhccccCCEEECCCCccccChh-hcCCCCCCEEECCC
Confidence 346789999999988765322 3467899999999998888774478999999999999998887 99999999999999
Q ss_pred CcCccCCCCCCCCCCCCEEecccccccccccccccCccccccccccccccccccccccCCCCCccEEEecCCCCCCCCCc
Q 003802 433 SCNLIRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQ 512 (794)
Q Consensus 433 n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~ 512 (794)
|.+....+ +..+++|++|++++|.+.. ++ .+..+++|++|++++ .... ++. +.++++|++|++++|.+... .
T Consensus 122 n~l~~~~~-~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~~-~~~~-~~~-~~~l~~L~~L~l~~n~l~~~--~ 193 (466)
T 1o6v_A 122 NQITDIDP-LKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLSFGN-QVTD-LKP-LANLTTLERLDISSNKVSDI--S 193 (466)
T ss_dssp SCCCCCGG-GTTCTTCSEEEEEEEEECC-CG-GGTTCTTCSEEEEEE-SCCC-CGG-GTTCTTCCEEECCSSCCCCC--G
T ss_pred CCCCCChH-HcCCCCCCEEECCCCccCC-Ch-hhccCCcccEeecCC-cccC-chh-hccCCCCCEEECcCCcCCCC--h
Confidence 97766544 8999999999999998654 33 589999999999974 4333 333 88999999999999987653 3
Q ss_pred cccCCCCCcEEEccCccCcccCcccccCCCCCEEEcCCCCCCCCccccccchhccccCCCCCCCccccCCCCCCCCCCCE
Q 003802 513 DLGEVECLEELDVGGTAIRQIPPSIVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQT 592 (794)
Q Consensus 513 ~~~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 592 (794)
.+..+++|++|++++|.++.++. ++.+++|+.|++++|.......+.....+..+.+..+..... +.+..+++|+.
T Consensus 194 ~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~ 269 (466)
T 1o6v_A 194 VLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNL---APLSGLTKLTE 269 (466)
T ss_dssp GGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCC---GGGTTCTTCSE
T ss_pred hhccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccc---hhhhcCCCCCE
Confidence 48899999999999999997765 788999999999999854444444444444455555554432 23778889999
Q ss_pred EecCCCCCccCCCCccccCCCCCCeEeCCCCCCccCchhhhccCCCCEEecCCCcCCCCCCCCCcccccccccccccccc
Q 003802 593 LDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLPSSINQLLKLKILCLEKCRNLKSLPELPPEIVFVGAEDCTSLET 672 (794)
Q Consensus 593 L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~~~~~~~L~~L~l~~~~~L~~ 672 (794)
|++++|.+.. ++. +..+++|+.|++++|+++.++. +..+++|+.|++++|++....| +..+++|+.
T Consensus 270 L~l~~n~l~~--~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~----------~~~l~~L~~ 335 (466)
T 1o6v_A 270 LKLGANQISN--ISP-LAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDISP----------VSSLTKLQR 335 (466)
T ss_dssp EECCSSCCCC--CGG-GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSCCSCCGG----------GGGCTTCCE
T ss_pred EECCCCccCc--ccc-ccCCCccCeEEcCCCcccCchh-hcCCCCCCEEECcCCcCCCchh----------hccCccCCE
Confidence 9999998433 443 7888999999999999988774 7889999999999997543321 356788888
Q ss_pred ccccccccCCCCceEEEeCCCCchhhhhhhhhHHHHHHHHHHhhhccccccCcccc
Q 003802 673 ISAFAKLSRSPNIALNFLNCFKLVEDQVSKDNLAVTLMKQWLLSYHSLVAWTDSTR 728 (794)
Q Consensus 673 l~~~~n~~~~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~~~~~l~~~~~~~~ 728 (794)
|++.+| ..... ..+.+|++|+.|++++|++++..+ +..++.+..+....+
T Consensus 336 L~l~~n-~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n 385 (466)
T 1o6v_A 336 LFFYNN-KVSDV--SSLANLTNINWLSAGHNQISDLTP---LANLTRITQLGLNDQ 385 (466)
T ss_dssp EECCSS-CCCCC--GGGTTCTTCCEEECCSSCCCBCGG---GTTCTTCCEEECCCE
T ss_pred eECCCC-ccCCc--hhhccCCCCCEEeCCCCccCccch---hhcCCCCCEEeccCC
Confidence 888777 33332 256789999999999999876543 444555555544433
No 36
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.95 E-value=9.7e-28 Score=272.50 Aligned_cols=178 Identities=21% Similarity=0.170 Sum_probs=136.9
Q ss_pred CCCCccEEEecCCCCCCCC--CccccCCCCCcEEEccCccCcccCcccccCCCCCEEEcCCCC--CCCC-ccccccchhc
Q 003802 492 LMKSLKILCLCGCLKLEKL--PQDLGEVECLEELDVGGTAIRQIPPSIVQLVNLKIFSLHGCK--GQPP-KILSSNFFLS 566 (794)
Q Consensus 492 ~l~~L~~L~L~~~~~~~~~--~~~~~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~--~~~~-~~~~~~~~~~ 566 (794)
.+++|++|++++|.+.+.. +..+..+++|++|++++|.+..+|..+..+++|++|++++|. ...+ ..+.....+.
T Consensus 345 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 424 (570)
T 2z63_A 345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI 424 (570)
T ss_dssp BCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCC
T ss_pred cCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCC
Confidence 4566677777766655432 566788999999999999999888889999999999999998 2222 2344444444
Q ss_pred cccCCCCCCCccccCCCCCCCCCCCEEecCCCCCccCCCCccccCCCCCCeEeCCCCCCccC-chhhhccCCCCEEecCC
Q 003802 567 LLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSL-PSSINQLLKLKILCLEK 645 (794)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~L~~ 645 (794)
.+.+..+.... .....+.++++|+.|++++|.+..+.+|..+..+++|++|++++|+++.+ |..+..+++|++|++++
T Consensus 425 ~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 503 (570)
T 2z63_A 425 YLDISHTHTRV-AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMAS 503 (570)
T ss_dssp EEECTTSCCEE-CCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred EEeCcCCcccc-cchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCC
Confidence 45555554332 22345888999999999999954467899999999999999999999966 77899999999999999
Q ss_pred CcCCCCCCCCCcccccccccccccccccccccc
Q 003802 646 CRNLKSLPELPPEIVFVGAEDCTSLETISAFAK 678 (794)
Q Consensus 646 n~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~n 678 (794)
|++....+. .+.++++|+.+++.+|
T Consensus 504 n~l~~~~~~--------~~~~l~~L~~L~l~~N 528 (570)
T 2z63_A 504 NQLKSVPDG--------IFDRLTSLQKIWLHTN 528 (570)
T ss_dssp SCCSCCCTT--------TTTTCTTCCEEECCSS
T ss_pred CcCCCCCHH--------HhhcccCCcEEEecCC
Confidence 986544332 3567899999999888
No 37
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.95 E-value=7.5e-28 Score=262.48 Aligned_cols=334 Identities=16% Similarity=0.135 Sum_probs=236.2
Q ss_pred CeEEEEEecCCcccccchhhhccCCCCcEEEEcCcccCCCccccccCcceeeeecCCCCCCCCCCCCCCceEEEcCCCCc
Q 003802 333 DAVEAIIVDVPEMTELEAKSFSTMSNLRLLEINNLYSSGNLEYLSNNLRYLKWHEYPFNSLPVSFRPEKLFKLNLCNSRI 412 (794)
Q Consensus 333 ~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~~~~~~~~l~~~~~~~~L~~L~L~~n~i 412 (794)
+.++.++++.+.+..++ .+..+++|++|++++|.+.+.....+.+|+.|++.++.+..++ ...+++|++|++++|.+
T Consensus 42 ~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~l~~L~~L~L~~N~l 118 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDMT--GIEKLTGLTKLICTSNNITTLDLSQNTNLTYLACDSNKLTNLD-VTPLTKLTYLNCDTNKL 118 (457)
T ss_dssp TTCCEEECCSSCCCCCT--TGGGCTTCSEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCCC-CTTCTTCCEEECCSSCC
T ss_pred CCCCEEEccCCCcccCh--hhcccCCCCEEEccCCcCCeEccccCCCCCEEECcCCCCceee-cCCCCcCCEEECCCCcC
Confidence 56789999999888775 6899999999999999998875566678899999999888875 34788999999999999
Q ss_pred ccccccccccccCceeccCCCcCccCCCCCCCCCCCCEEecccccccccccccccCccccccccccccccccccccccCC
Q 003802 413 KYLWKGIKPLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCL 492 (794)
Q Consensus 413 ~~l~~~~~~l~~L~~L~L~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 492 (794)
+.+| +..+++|++|++++|.+... .+..+++|++|++++|...+.+ .+..+++|++|++++|.+.+ +| +..
T Consensus 119 ~~l~--~~~l~~L~~L~l~~N~l~~l--~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~--l~~ 189 (457)
T 3bz5_A 119 TKLD--VSQNPLLTYLNCARNTLTEI--DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD--VSQ 189 (457)
T ss_dssp SCCC--CTTCTTCCEEECTTSCCSCC--CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC--CTT
T ss_pred Ceec--CCCCCcCCEEECCCCcccee--ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-ec--ccc
Confidence 9986 89999999999999988774 4888999999999999777766 58889999999999998665 55 788
Q ss_pred CCCccEEEecCCCCCCCCCccccCCCCCcEEEccCccCcccCcccccCCCCCEEEcCCCCCCC-C-ccccccch------
Q 003802 493 MKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPPSIVQLVNLKIFSLHGCKGQP-P-KILSSNFF------ 564 (794)
Q Consensus 493 l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~-~-~~~~~~~~------ 564 (794)
+++|+.|++++|.+.+. .++.+++|+.|++++|+++.+| +..+++|+.|++++|.... + ..+.....
T Consensus 190 l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n 264 (457)
T 3bz5_A 190 NKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQT 264 (457)
T ss_dssp CTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTC
T ss_pred CCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCC
Confidence 99999999999988875 3889999999999999999987 8899999999999998322 1 11111110
Q ss_pred -hccccCCCCCCCccccCCCCCCCCCCCEEecCCCCCccCCCCc--------cccCCCCCCeEeCCCCCCccCchhhhcc
Q 003802 565 -LSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPS--------DIGSLFSLEAIDLSGNNFFSLPSSINQL 635 (794)
Q Consensus 565 -~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~--------~~~~l~~L~~L~L~~n~l~~lp~~l~~l 635 (794)
+..+....+...... + ++.+++|+.|++++|... +.+|. .++.+++|++|++++|+++.++ ++.+
T Consensus 265 ~L~~L~l~~n~~~~~~--~-~~~l~~L~~L~Ls~n~~l-~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l~--l~~l 338 (457)
T 3bz5_A 265 DLLEIDLTHNTQLIYF--Q-AEGCRKIKELDVTHNTQL-YLLDCQAAGITELDLSQNPKLVYLYLNNTELTELD--VSHN 338 (457)
T ss_dssp CCSCCCCTTCTTCCEE--E-CTTCTTCCCCCCTTCTTC-CEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCCC--CTTC
T ss_pred CCCEEECCCCccCCcc--c-ccccccCCEEECCCCccc-ceeccCCCcceEechhhcccCCEEECCCCcccccc--cccC
Confidence 011111111111111 1 345566666666666522 22221 1344556666666666666553 5666
Q ss_pred CCCCEEecCCCcCCCCCCCCCccccccccccccccccccccccccCCCCceEEEeCCCCchhhhhhhhhHHHHHHH
Q 003802 636 LKLKILCLEKCRNLKSLPELPPEIVFVGAEDCTSLETISAFAKLSRSPNIALNFLNCFKLVEDQVSKDNLAVTLMK 711 (794)
Q Consensus 636 ~~L~~L~L~~n~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~n~~~~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~ 711 (794)
++|+.|++++|++. +++.|..+++..| ... ...++..|..+++++|.++|.++.
T Consensus 339 ~~L~~L~l~~N~l~----------------~l~~L~~L~l~~n-~l~-----g~~~~~~l~~l~l~~N~l~g~ip~ 392 (457)
T 3bz5_A 339 TKLKSLSCVNAHIQ----------------DFSSVGKIPALNN-NFE-----AEGQTITMPKETLTNNSLTIAVSP 392 (457)
T ss_dssp TTCSEEECCSSCCC----------------BCTTGGGSSGGGT-SEE-----EEEEEEECCCBCCBTTBEEEECCT
T ss_pred CcCcEEECCCCCCC----------------CccccccccccCC-cEE-----ecceeeecCccccccCcEEEEcCh
Confidence 66666666666522 1233444444433 111 113455566677777777655443
No 38
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.95 E-value=3.4e-27 Score=264.41 Aligned_cols=332 Identities=17% Similarity=0.167 Sum_probs=208.3
Q ss_pred cCCCeEEEEEecCCcccccchhhhccCCCCcEEEEcCcccCCCccccccCcceeeeecCCCCCC--CCCC-CCCCceEEE
Q 003802 330 MGTDAVEAIIVDVPEMTELEAKSFSTMSNLRLLEINNLYSSGNLEYLSNNLRYLKWHEYPFNSL--PVSF-RPEKLFKLN 406 (794)
Q Consensus 330 ~~~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~~~~~~~~l--~~~~-~~~~L~~L~ 406 (794)
.....++.++++.|.+..+.+..|.++++|++|++++|.+.......+.+|++|++.++.+..+ |..+ .+++|++|+
T Consensus 42 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~ 121 (520)
T 2z7x_B 42 LSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLG 121 (520)
T ss_dssp TTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECCCCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEE
T ss_pred cccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCccccCCccEEeccCCccccccchhhhccCCcceEEE
Confidence 4567899999999999999999999999999999999999854444567899999999888764 4455 788999999
Q ss_pred cCCCCcccccccccccccC--ceeccCCCcC--ccCCCC-CCC--------------------------CCC--------
Q 003802 407 LCNSRIKYLWKGIKPLKEL--KFMNLSHSCN--LIRTPD-FTG--------------------------VPN-------- 447 (794)
Q Consensus 407 L~~n~i~~l~~~~~~l~~L--~~L~L~~n~~--~~~~~~-~~~--------------------------l~~-------- 447 (794)
+++|.++. ..+..+++| ++|++++|.+ ....|. +.. +++
T Consensus 122 L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~ 199 (520)
T 2z7x_B 122 LSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKC 199 (520)
T ss_dssp EEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEE
T ss_pred ecCcccch--hhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccc
Confidence 99999886 346777788 9999988877 333322 332 333
Q ss_pred -------------------------------------------------CCEEecccccccccccccc-----cCccccc
Q 003802 448 -------------------------------------------------LERLNLEGCTRLLEVHQSV-----GTLKRLI 473 (794)
Q Consensus 448 -------------------------------------------------L~~L~l~~~~~~~~~~~~~-----~~l~~L~ 473 (794)
|++|++++|.+.+.+|..+ ..+++|+
T Consensus 200 n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~ 279 (520)
T 2z7x_B 200 VLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALS 279 (520)
T ss_dssp CCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEE
T ss_pred cccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeE
Confidence 4444444444443444444 4444444
Q ss_pred cccccccccccccc-cccCCC---CCccEEEecCCCCCCCCCccccCCCCCcEEEccCccCcc-cCcccccCCCCCEEEc
Q 003802 474 LLNLKDCRNLVSFP-KNVCLM---KSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQ-IPPSIVQLVNLKIFSL 548 (794)
Q Consensus 474 ~L~l~~n~~~~~~~-~~~~~l---~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-l~~~l~~l~~L~~L~l 548 (794)
.+++++|.+ .+| ..+..+ .+|+.|++++|.+.... .+..+++|++|++++|.++. +|..+..+++|++|++
T Consensus 280 ~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 355 (520)
T 2z7x_B 280 IHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLIL 355 (520)
T ss_dssp EEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEEC
T ss_pred eccccccce--ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEc
Confidence 444444333 222 111000 11222222222111100 01344455555555555543 4444445555555555
Q ss_pred CCCCCCC----CccccccchhccccCCCCCCCccccCCCCCCCCCCCEEecCCCCCccCCCCccccCCCCCCeEeCCCCC
Q 003802 549 HGCKGQP----PKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNN 624 (794)
Q Consensus 549 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~n~ 624 (794)
++|.... +..+.....+..+.+..|..........+..+++|+.|++++|. +++..|..+. ++|+.|++++|+
T Consensus 356 ~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~--~~L~~L~Ls~N~ 432 (520)
T 2z7x_B 356 QMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNI-LTDTIFRCLP--PRIKVLDLHSNK 432 (520)
T ss_dssp CSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSC-CCGGGGGSCC--TTCCEEECCSSC
T ss_pred cCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCC-CCcchhhhhc--ccCCEEECCCCc
Confidence 5554221 11122222223333333333322233347788999999999999 5555555543 799999999999
Q ss_pred CccCchhhhccCCCCEEecCCCcCCCCCCCCCcccccccccccccccccccccc
Q 003802 625 FFSLPSSINQLLKLKILCLEKCRNLKSLPELPPEIVFVGAEDCTSLETISAFAK 678 (794)
Q Consensus 625 l~~lp~~l~~l~~L~~L~L~~n~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~n 678 (794)
++.+|..+..+++|++|+|++|++. .+|. . .+.++++|+.+++.+|
T Consensus 433 l~~ip~~~~~l~~L~~L~L~~N~l~-~l~~---~----~~~~l~~L~~L~l~~N 478 (520)
T 2z7x_B 433 IKSIPKQVVKLEALQELNVASNQLK-SVPD---G----IFDRLTSLQKIWLHTN 478 (520)
T ss_dssp CCCCCGGGGGCTTCCEEECCSSCCC-CCCT---T----TTTTCTTCCEEECCSS
T ss_pred ccccchhhhcCCCCCEEECCCCcCC-ccCH---H----HhccCCcccEEECcCC
Confidence 9999998899999999999999854 4443 2 2567899999999888
No 39
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.95 E-value=9.8e-28 Score=276.55 Aligned_cols=375 Identities=20% Similarity=0.172 Sum_probs=257.7
Q ss_pred CeEEEEEecCCcccccchhhhccCCCCcEEEEcCcccCCCcccccc---CcceeeeecCCCCCCCCC-C-CCCCceEEEc
Q 003802 333 DAVEAIIVDVPEMTELEAKSFSTMSNLRLLEINNLYSSGNLEYLSN---NLRYLKWHEYPFNSLPVS-F-RPEKLFKLNL 407 (794)
Q Consensus 333 ~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~---~l~~L~~~~~~~~~l~~~-~-~~~~L~~L~L 407 (794)
..++.++++.|.+..+++.+|.++++|++|+|++|.+.+..+..|. +|++|++.+|.+..++.. + .+++|++|++
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 4689999999999999999999999999999999999887776654 677777778877777754 3 7899999999
Q ss_pred CCCCccccccc-ccccccCceeccCCCcCccC-CCC-CCCCCCCCEEecccccccccccccccCcccccc----cccccc
Q 003802 408 CNSRIKYLWKG-IKPLKELKFMNLSHSCNLIR-TPD-FTGVPNLERLNLEGCTRLLEVHQSVGTLKRLIL----LNLKDC 480 (794)
Q Consensus 408 ~~n~i~~l~~~-~~~l~~L~~L~L~~n~~~~~-~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~----L~l~~n 480 (794)
++|.++.+|.. |+++++|++|++++|.+... .+. +..+++|++|++++|.+.+..+..+..+.+++. ++++.|
T Consensus 132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n 211 (635)
T 4g8a_A 132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 211 (635)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred CCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccC
Confidence 99999999865 89999999999999988654 344 788999999999999877665555444333221 112111
Q ss_pred cccccc--------------------------------------------------------------------------
Q 003802 481 RNLVSF-------------------------------------------------------------------------- 486 (794)
Q Consensus 481 ~~~~~~-------------------------------------------------------------------------- 486 (794)
.+....
T Consensus 212 ~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~ 291 (635)
T 4g8a_A 212 PMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL 291 (635)
T ss_dssp CCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECC
T ss_pred cccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhh
Confidence 110000
Q ss_pred -----------------------------ccccCCCCCccEEEecCCCCCCCCC-------------------ccccCCC
Q 003802 487 -----------------------------PKNVCLMKSLKILCLCGCLKLEKLP-------------------QDLGEVE 518 (794)
Q Consensus 487 -----------------------------~~~~~~l~~L~~L~L~~~~~~~~~~-------------------~~~~~l~ 518 (794)
...+....+|+.|++.+|.+....+ .....++
T Consensus 292 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~ 371 (635)
T 4g8a_A 292 DYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLP 371 (635)
T ss_dssp CSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCT
T ss_pred cccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCccccccc
Confidence 0011223456666666654432211 1233567
Q ss_pred CCcEEEccCccCc---ccCcccccCCCCCEEEcCCCCC-CCC-------------------------ccccccchhcccc
Q 003802 519 CLEELDVGGTAIR---QIPPSIVQLVNLKIFSLHGCKG-QPP-------------------------KILSSNFFLSLLL 569 (794)
Q Consensus 519 ~L~~L~l~~~~l~---~l~~~l~~l~~L~~L~l~~~~~-~~~-------------------------~~~~~~~~~~~~~ 569 (794)
+|+.|++++|.+. ..+.....+.+|+.+++..+.. ..+ ..+..........
T Consensus 372 ~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ 451 (635)
T 4g8a_A 372 SLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD 451 (635)
T ss_dssp TCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEE
T ss_pred ccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccccccccccc
Confidence 8888888888765 2344445555666666655541 000 0111111111122
Q ss_pred CCCCCCCccccCCCCCCCCCCCEEecCCCCCccCCCCccccCCCCCCeEeCCCCCCccC-chhhhccCCCCEEecCCCcC
Q 003802 570 PNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSL-PSSINQLLKLKILCLEKCRN 648 (794)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~L~~n~~ 648 (794)
...+... ......+..+++|+.|++++|.......|..+..+++|++|+|++|+++.+ |..+.++++|++|+|++|++
T Consensus 452 ls~n~l~-~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l 530 (635)
T 4g8a_A 452 ISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 530 (635)
T ss_dssp CTTSCCE-ECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred ccccccc-cccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcC
Confidence 2222222 112234677889999999999866666788899999999999999999966 56789999999999999985
Q ss_pred CCCCCCCCccccccccccccccccccccccccCCCCceEEEeCC-CCchhhhhhhhhHHHH----HHHHHHhhh
Q 003802 649 LKSLPELPPEIVFVGAEDCTSLETISAFAKLSRSPNIALNFLNC-FKLVEDQVSKDNLAVT----LMKQWLLSY 717 (794)
Q Consensus 649 ~~~~~~~~~~L~~L~l~~~~~L~~l~~~~n~~~~~~~~~~~~~~-~~L~~L~l~~N~l~~~----~~~~~~~~~ 717 (794)
....|. .+.++++|+.|++++| .+....+..+.++ ++|++|++++|+++++ ++..|+...
T Consensus 531 ~~l~~~--------~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~~~~~~wl~~~ 595 (635)
T 4g8a_A 531 FSLDTF--------PYKCLNSLQVLDYSLN-HIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQ 595 (635)
T ss_dssp CBCCCG--------GGTTCTTCCEEECTTS-CCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGGHHHHHHHHHT
T ss_pred CCCChh--------HHhCCCCCCEEECCCC-cCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCcHHHHHHHHhC
Confidence 433322 3577889999999888 5556666677777 5899999999999753 455666543
No 40
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.95 E-value=1e-26 Score=243.98 Aligned_cols=294 Identities=17% Similarity=0.152 Sum_probs=222.8
Q ss_pred CcceeeeecCCCCCCCCCCCCCCceEEEcCCCCcccccc-cccccccCceeccCCCcCccCCCC-CCCCCCCCEEecccc
Q 003802 379 NLRYLKWHEYPFNSLPVSFRPEKLFKLNLCNSRIKYLWK-GIKPLKELKFMNLSHSCNLIRTPD-FTGVPNLERLNLEGC 456 (794)
Q Consensus 379 ~l~~L~~~~~~~~~l~~~~~~~~L~~L~L~~n~i~~l~~-~~~~l~~L~~L~L~~n~~~~~~~~-~~~l~~L~~L~l~~~ 456 (794)
+++.+++.++.+..+|..+. +++++|++++|.++.++. .+.++++|++|++++|.+....|. |..+++|++|++++|
T Consensus 32 ~l~~l~~~~~~l~~lp~~~~-~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 110 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDLP-PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 110 (330)
T ss_dssp ETTEEECTTSCCCSCCCSCC-TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS
T ss_pred CCeEEEecCCCccccCccCC-CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC
Confidence 56666666667777776553 588999999999998876 588999999999999988877665 889999999999998
Q ss_pred cccccccccccCccccccccccccccccccccccCCCCCccEEEecCCCCCC--CCCccccCCCCCcEEEccCccCcccC
Q 003802 457 TRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLE--KLPQDLGEVECLEELDVGGTAIRQIP 534 (794)
Q Consensus 457 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~~~~~~--~~~~~~~~l~~L~~L~l~~~~l~~l~ 534 (794)
.+. .+|..+. ++|++|++++|.+.+..+..+..+++|++|++++|.+.. ..+..+.++++|+.|++++|.++.+|
T Consensus 111 ~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~ 187 (330)
T 1xku_A 111 QLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIP 187 (330)
T ss_dssp CCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCC
T ss_pred cCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCC
Confidence 765 5565554 789999999998877777778899999999999988753 56777899999999999999999888
Q ss_pred cccccCCCCCEEEcCCCCCCCCccccccchhccccCCCCCCCccccCCCCCCCCCCCEEecCCCCCccCCCCccccCCCC
Q 003802 535 PSIVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFS 614 (794)
Q Consensus 535 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~ 614 (794)
..+. ++|++|++++|.... .....+..+++|+.|++++|. +++..+..+..+++
T Consensus 188 ~~~~--~~L~~L~l~~n~l~~-----------------------~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~ 241 (330)
T 1xku_A 188 QGLP--PSLTELHLDGNKITK-----------------------VDAASLKGLNNLAKLGLSFNS-ISAVDNGSLANTPH 241 (330)
T ss_dssp SSCC--TTCSEEECTTSCCCE-----------------------ECTGGGTTCTTCCEEECCSSC-CCEECTTTGGGSTT
T ss_pred cccc--ccCCEEECCCCcCCc-----------------------cCHHHhcCCCCCCEEECCCCc-CceeChhhccCCCC
Confidence 7664 899999999987221 111336788899999999998 55556667889999
Q ss_pred CCeEeCCCCCCccCchhhhccCCCCEEecCCCcCCCCCCCCCccccccccccccccccccccccccCC-CCceEEEeCCC
Q 003802 615 LEAIDLSGNNFFSLPSSINQLLKLKILCLEKCRNLKSLPELPPEIVFVGAEDCTSLETISAFAKLSRS-PNIALNFLNCF 693 (794)
Q Consensus 615 L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~n~~~~-~~~~~~~~~~~ 693 (794)
|++|+|++|.++.+|..+..+++|++|++++|++...-+....... .....+.|+.+++.+|.... ...+..+..++
T Consensus 242 L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~--~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~ 319 (330)
T 1xku_A 242 LRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPG--YNTKKASYSGVSLFSNPVQYWEIQPSTFRCVY 319 (330)
T ss_dssp CCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSS--CCTTSCCCSEEECCSSSSCGGGSCGGGGTTCC
T ss_pred CCEEECCCCcCccCChhhccCCCcCEEECCCCcCCccChhhcCCcc--cccccccccceEeecCcccccccCcccccccc
Confidence 9999999999999998999999999999999985433222111110 01124567777777662211 23345677888
Q ss_pred Cchhhhhhhhh
Q 003802 694 KLVEDQVSKDN 704 (794)
Q Consensus 694 ~L~~L~l~~N~ 704 (794)
+|+.+++++|+
T Consensus 320 ~l~~l~L~~N~ 330 (330)
T 1xku_A 320 VRAAVQLGNYK 330 (330)
T ss_dssp CGGGEEC----
T ss_pred ceeEEEecccC
Confidence 99999998884
No 41
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.95 E-value=2.3e-27 Score=258.38 Aligned_cols=335 Identities=18% Similarity=0.149 Sum_probs=190.6
Q ss_pred CCeEEEEEecCCcccccchhhhccCCCCcEEEEcCcccCCCccccccC----------------cceeeeecCCCCCCCC
Q 003802 332 TDAVEAIIVDVPEMTELEAKSFSTMSNLRLLEINNLYSSGNLEYLSNN----------------LRYLKWHEYPFNSLPV 395 (794)
Q Consensus 332 ~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~----------------l~~L~~~~~~~~~l~~ 395 (794)
...++.+.++.+.+..++ ..++++++|++|++++|.+.+.+|..+.+ ++.|++.++.+..+|.
T Consensus 10 ~~~L~~L~l~~n~l~~iP-~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~ 88 (454)
T 1jl5_A 10 NTFLQEPLRHSSNLTEMP-VEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPE 88 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCS
T ss_pred cccchhhhcccCchhhCC-hhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCC
Confidence 467788888888885554 56899999999999999988888877664 4667788888777776
Q ss_pred CCCCCCceEEEcCCCCcccccccccccccCceeccCCCcCccCCCCCCCCCCCCEEecccccccccccccccCccccccc
Q 003802 396 SFRPEKLFKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILL 475 (794)
Q Consensus 396 ~~~~~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 475 (794)
. +++|++|++++|.++.+|.. +++|++|++++|.+.... .+ .++|++|++++|.+.+ +| .++++++|++|
T Consensus 89 ~--~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~l~~l~-~~--~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L 158 (454)
T 1jl5_A 89 L--PPHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKALS-DL--PPLLEYLGVSNNQLEK-LP-ELQNSSFLKII 158 (454)
T ss_dssp C--CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCC-SC--CTTCCEEECCSSCCSS-CC-CCTTCTTCCEE
T ss_pred C--cCCCCEEEccCCcCCccccc---cCCCcEEECCCCccCccc-CC--CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEE
Confidence 3 47899999999999888754 478889999888765432 22 2688999999887765 66 58888899999
Q ss_pred cccccccccccccccCCCCCccEEEecCCCCCCCCCccccCCCCCcEEEccCccCcccCcccccCCCCCEEEcCCCCCC-
Q 003802 476 NLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPPSIVQLVNLKIFSLHGCKGQ- 554 (794)
Q Consensus 476 ~l~~n~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~~- 554 (794)
++++|.+.+ +|.. ..+|++|++++|.+.+ +| .++++++|+.|++++|.++.+|... ++|++|++++|...
T Consensus 159 ~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l~~~~---~~L~~L~l~~n~l~~ 229 (454)
T 1jl5_A 159 DVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKLPDLP---LSLESIVAGNNILEE 229 (454)
T ss_dssp ECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSCCCCC---TTCCEEECCSSCCSS
T ss_pred ECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcCCCCc---CcccEEECcCCcCCc
Confidence 998887654 5653 3588899998887776 55 5888888999999888888777543 58888888888722
Q ss_pred CCccccccchhccccCCCCCCCccccCCCCCCCCCCCEEecCCCCCccCCCCccccCCCCCCeEeCCCCCCccCchhhhc
Q 003802 555 PPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLPSSINQ 634 (794)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~ 634 (794)
.| .+.....+..+....+.... ++. .+++|+.|++++|.+.. +|.. +++|++|++++|.++.+|..
T Consensus 230 lp-~~~~l~~L~~L~l~~N~l~~---l~~--~~~~L~~L~l~~N~l~~--l~~~---~~~L~~L~ls~N~l~~l~~~--- 295 (454)
T 1jl5_A 230 LP-ELQNLPFLTTIYADNNLLKT---LPD--LPPSLEALNVRDNYLTD--LPEL---PQSLTFLDVSENIFSGLSEL--- 295 (454)
T ss_dssp CC-CCTTCTTCCEEECCSSCCSS---CCS--CCTTCCEEECCSSCCSC--CCCC---CTTCCEEECCSSCCSEESCC---
T ss_pred cc-ccCCCCCCCEEECCCCcCCc---ccc--cccccCEEECCCCcccc--cCcc---cCcCCEEECcCCccCcccCc---
Confidence 22 12222222222222222221 111 12455555555555322 3332 24555555555555544311
Q ss_pred cCCCCEEecCCCcCCCCCCCCCccccccccccc---------cccccccccccccCCCCceEEEeCCCCchhhhhhhhhH
Q 003802 635 LLKLKILCLEKCRNLKSLPELPPEIVFVGAEDC---------TSLETISAFAKLSRSPNIALNFLNCFKLVEDQVSKDNL 705 (794)
Q Consensus 635 l~~L~~L~L~~n~~~~~~~~~~~~L~~L~l~~~---------~~L~~l~~~~n~~~~~~~~~~~~~~~~L~~L~l~~N~l 705 (794)
.++|+.|++++|++. .++.+|++|+.|+++++ ++|+.|++++| .... ++. .+++|++|++++|++
T Consensus 296 ~~~L~~L~l~~N~l~-~i~~~~~~L~~L~Ls~N~l~~lp~~~~~L~~L~L~~N-~l~~-lp~---~l~~L~~L~L~~N~l 369 (454)
T 1jl5_A 296 PPNLYYLNASSNEIR-SLCDLPPSLEELNVSNNKLIELPALPPRLERLIASFN-HLAE-VPE---LPQNLKQLHVEYNPL 369 (454)
T ss_dssp CTTCCEEECCSSCCS-EECCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSS-CCSC-CCC---CCTTCCEEECCSSCC
T ss_pred CCcCCEEECcCCcCC-cccCCcCcCCEEECCCCccccccccCCcCCEEECCCC-cccc-ccc---hhhhccEEECCCCCC
Confidence 134555555554432 23344444444444332 34444444444 1111 111 345555555555554
Q ss_pred H
Q 003802 706 A 706 (794)
Q Consensus 706 ~ 706 (794)
+
T Consensus 370 ~ 370 (454)
T 1jl5_A 370 R 370 (454)
T ss_dssp S
T ss_pred C
Confidence 3
No 42
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.95 E-value=2.1e-26 Score=250.85 Aligned_cols=325 Identities=18% Similarity=0.164 Sum_probs=219.0
Q ss_pred CeEEEEEecCCcccccchhhhccCCCCcEEEEcCcccCCCccccccCcceeeeecCCCCCCCCCCCCCCceEEEcCCCCc
Q 003802 333 DAVEAIIVDVPEMTELEAKSFSTMSNLRLLEINNLYSSGNLEYLSNNLRYLKWHEYPFNSLPVSFRPEKLFKLNLCNSRI 412 (794)
Q Consensus 333 ~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~~~~~~~~l~~~~~~~~L~~L~L~~n~i 412 (794)
..++.+.++++.+..++. -.++|++|++++|.+.+ +|..+.+++.|++.++.+..++.. +++|++|++++|.+
T Consensus 71 ~~l~~L~l~~~~l~~lp~----~~~~L~~L~l~~n~l~~-lp~~~~~L~~L~l~~n~l~~l~~~--~~~L~~L~L~~n~l 143 (454)
T 1jl5_A 71 RQAHELELNNLGLSSLPE----LPPHLESLVASCNSLTE-LPELPQSLKSLLVDNNNLKALSDL--PPLLEYLGVSNNQL 143 (454)
T ss_dssp HTCSEEECTTSCCSCCCS----CCTTCSEEECCSSCCSS-CCCCCTTCCEEECCSSCCSCCCSC--CTTCCEEECCSSCC
T ss_pred cCCCEEEecCCccccCCC----CcCCCCEEEccCCcCCc-cccccCCCcEEECCCCccCcccCC--CCCCCEEECcCCCC
Confidence 345778888887777654 24789999999999887 666778999999998888877653 36899999999999
Q ss_pred ccccccccccccCceeccCCCcCccCCCCCCCCCCCCEEecccccccccccccccCccccccccccccccccccccccCC
Q 003802 413 KYLWKGIKPLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCL 492 (794)
Q Consensus 413 ~~l~~~~~~l~~L~~L~L~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 492 (794)
+.+| ++.++++|++|++++|.+... |.. .++|++|++++|.+.+ +| .++++++|++|++++|.+.+ +|..
T Consensus 144 ~~lp-~~~~l~~L~~L~l~~N~l~~l-p~~--~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~--- 213 (454)
T 1jl5_A 144 EKLP-ELQNSSFLKIIDVDNNSLKKL-PDL--PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL--- 213 (454)
T ss_dssp SSCC-CCTTCTTCCEEECCSSCCSCC-CCC--CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---
T ss_pred CCCc-ccCCCCCCCEEECCCCcCccc-CCC--cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---
Confidence 9988 599999999999999987653 332 3589999999987765 56 68999999999999988654 5543
Q ss_pred CCCccEEEecCCCCCCCCCccccCCCCCcEEEccCccCcccCcccccCCCCCEEEcCCCCC-CCCccccccchhccccCC
Q 003802 493 MKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPPSIVQLVNLKIFSLHGCKG-QPPKILSSNFFLSLLLPN 571 (794)
Q Consensus 493 l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~-~~~~~~~~~~~~~~~~~~ 571 (794)
.++|++|++++|.+. .+|. ++.+++|++|++++|+++.+|.. +++|++|++++|.. ..|... ..+..+.+.
T Consensus 214 ~~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~N~l~~l~~~~---~~L~~L~ls 285 (454)
T 1jl5_A 214 PLSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKTLPDL---PPSLEALNVRDNYLTDLPELP---QSLTFLDVS 285 (454)
T ss_dssp CTTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSSCCSC---CTTCCEEECCSSCCSCCCCCC---TTCCEEECC
T ss_pred cCcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCCccccc---ccccCEEECCCCcccccCccc---CcCCEEECc
Confidence 358999999998776 5664 88999999999999999888763 47899999999882 233221 222333344
Q ss_pred CCCCCccccCCCCCCCCCCCEEecCCCCCccCCCCccccCC-CCCCeEeCCCCCCccCchhhhccCCCCEEecCCCcCCC
Q 003802 572 KNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSL-FSLEAIDLSGNNFFSLPSSINQLLKLKILCLEKCRNLK 650 (794)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l-~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~~~~ 650 (794)
.+....... ..++|+.|++++|.+.. ++ .+ ++|++|++++|+++.+|.. +++|++|++++|.+.
T Consensus 286 ~N~l~~l~~-----~~~~L~~L~l~~N~l~~--i~----~~~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~L~~N~l~- 350 (454)
T 1jl5_A 286 ENIFSGLSE-----LPPNLYYLNASSNEIRS--LC----DLPPSLEELNVSNNKLIELPAL---PPRLERLIASFNHLA- 350 (454)
T ss_dssp SSCCSEESC-----CCTTCCEEECCSSCCSE--EC----CCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCS-
T ss_pred CCccCcccC-----cCCcCCEEECcCCcCCc--cc----CCcCcCCEEECCCCcccccccc---CCcCCEEECCCCccc-
Confidence 444332111 12578888888887432 22 23 5888899988888888754 578889999888744
Q ss_pred CCCCCCccccccccccccccccccccccccCCCCceEEEe-------------CCCCchhhhhhhhhHHH
Q 003802 651 SLPELPPEIVFVGAEDCTSLETISAFAKLSRSPNIALNFL-------------NCFKLVEDQVSKDNLAV 707 (794)
Q Consensus 651 ~~~~~~~~L~~L~l~~~~~L~~l~~~~n~~~~~~~~~~~~-------------~~~~L~~L~l~~N~l~~ 707 (794)
.+|..+++|+.|+++++ .++.++ .++..+. .+++|+.|++++|++++
T Consensus 351 ~lp~~l~~L~~L~L~~N-~l~~l~---------~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~ 410 (454)
T 1jl5_A 351 EVPELPQNLKQLHVEYN-PLREFP---------DIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLRE 410 (454)
T ss_dssp CCCCCCTTCCEEECCSS-CCSSCC---------CCCTTCCEEECCC------------------------
T ss_pred cccchhhhccEEECCCC-CCCcCC---------CChHHHHhhhhcccccccccccCcCCEEECCCCcCCc
Confidence 46654555555555543 222211 1111111 23889999999999986
No 43
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.95 E-value=7.2e-27 Score=245.19 Aligned_cols=293 Identities=17% Similarity=0.149 Sum_probs=221.6
Q ss_pred CcceeeeecCCCCCCCCCCCCCCceEEEcCCCCcccccc-cccccccCceeccCCCcCccCCCC-CCCCCCCCEEecccc
Q 003802 379 NLRYLKWHEYPFNSLPVSFRPEKLFKLNLCNSRIKYLWK-GIKPLKELKFMNLSHSCNLIRTPD-FTGVPNLERLNLEGC 456 (794)
Q Consensus 379 ~l~~L~~~~~~~~~l~~~~~~~~L~~L~L~~n~i~~l~~-~~~~l~~L~~L~L~~n~~~~~~~~-~~~l~~L~~L~l~~~ 456 (794)
+++.+++.++.+..+|..+ .++|++|++++|.++.++. .+.++++|++|++++|.+....+. |.++++|++|++++|
T Consensus 34 ~l~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 112 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEI-SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN 112 (332)
T ss_dssp ETTEEECCSSCCSSCCSCC-CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS
T ss_pred cCCEEECCCCCccccCCCC-CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC
Confidence 4566666666667777655 3689999999999998854 689999999999999988877665 889999999999998
Q ss_pred cccccccccccCccccccccccccccccccccccCCCCCccEEEecCCCCC--CCCCccccCCCCCcEEEccCccCcccC
Q 003802 457 TRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKL--EKLPQDLGEVECLEELDVGGTAIRQIP 534 (794)
Q Consensus 457 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~~~~~--~~~~~~~~~l~~L~~L~l~~~~l~~l~ 534 (794)
.+. .+|..+. ++|++|++++|.+....+..+..+++|++|++++|.+. +..+..+..+ +|+.|++++|.++.+|
T Consensus 113 ~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~ 188 (332)
T 2ft3_A 113 HLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIP 188 (332)
T ss_dssp CCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCC
T ss_pred cCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccC
Confidence 765 5665554 78999999998877666667889999999999999885 3567778777 8999999999999888
Q ss_pred cccccCCCCCEEEcCCCCCCCCccccccchhccccCCCCCCCccccCCCCCCCCCCCEEecCCCCCccCCCCccccCCCC
Q 003802 535 PSIVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFS 614 (794)
Q Consensus 535 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~ 614 (794)
..+. ++|++|++++|.... .....+..+++|+.|++++|. +++..+..+..+++
T Consensus 189 ~~~~--~~L~~L~l~~n~i~~-----------------------~~~~~l~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~ 242 (332)
T 2ft3_A 189 KDLP--ETLNELHLDHNKIQA-----------------------IELEDLLRYSKLYRLGLGHNQ-IRMIENGSLSFLPT 242 (332)
T ss_dssp SSSC--SSCSCCBCCSSCCCC-----------------------CCTTSSTTCTTCSCCBCCSSC-CCCCCTTGGGGCTT
T ss_pred cccc--CCCCEEECCCCcCCc-----------------------cCHHHhcCCCCCCEEECCCCc-CCcCChhHhhCCCC
Confidence 7664 789999999887321 112347788999999999999 55566678999999
Q ss_pred CCeEeCCCCCCccCchhhhccCCCCEEecCCCcCCCCCCCCCccccccccccccccccccccccccCC-CCceEEEeCCC
Q 003802 615 LEAIDLSGNNFFSLPSSINQLLKLKILCLEKCRNLKSLPELPPEIVFVGAEDCTSLETISAFAKLSRS-PNIALNFLNCF 693 (794)
Q Consensus 615 L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~n~~~~-~~~~~~~~~~~ 693 (794)
|++|++++|+++.+|..+..+++|++|++++|++...-+....... .....+.|+.+++.+|.... ...+..+..++
T Consensus 243 L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~--~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~ 320 (332)
T 2ft3_A 243 LRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVG--FGVKRAYYNGISLFNNPVPYWEVQPATFRCVT 320 (332)
T ss_dssp CCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSS--CCSSSCCBSEEECCSSSSCGGGSCGGGGTTBC
T ss_pred CCEEECCCCcCeecChhhhcCccCCEEECCCCCCCccChhHccccc--cccccccccceEeecCcccccccCcccccccc
Confidence 9999999999999999999999999999999985433222111100 00113566777776662211 33445678899
Q ss_pred Cchhhhhhhhh
Q 003802 694 KLVEDQVSKDN 704 (794)
Q Consensus 694 ~L~~L~l~~N~ 704 (794)
+|+.+++++|.
T Consensus 321 ~L~~l~l~~n~ 331 (332)
T 2ft3_A 321 DRLAIQFGNYK 331 (332)
T ss_dssp CSTTEEC----
T ss_pred hhhhhhccccc
Confidence 99999998874
No 44
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.94 E-value=1.2e-27 Score=248.23 Aligned_cols=228 Identities=17% Similarity=0.235 Sum_probs=131.8
Q ss_pred CceEEEcCCCCcc---cccccccccccCceeccCC-CcCccCCCC-CCCCCCCCEEecccccccccccccccCccccccc
Q 003802 401 KLFKLNLCNSRIK---YLWKGIKPLKELKFMNLSH-SCNLIRTPD-FTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILL 475 (794)
Q Consensus 401 ~L~~L~L~~n~i~---~l~~~~~~l~~L~~L~L~~-n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 475 (794)
++++|++++|.++ .+|..+.++++|++|++++ |.+....|. |..+++|++|++++|.+.+.+|..+.++++|++|
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 130 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence 4555555555554 3455566666666666663 545444443 5566666666666666555566666666666666
Q ss_pred cccccccccccccccCCCCCccEEEecCCCCCCCCCccccCCC-CCcEEEccCccCc-ccCcccccCCCCCEEEcCCCCC
Q 003802 476 NLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVE-CLEELDVGGTAIR-QIPPSIVQLVNLKIFSLHGCKG 553 (794)
Q Consensus 476 ~l~~n~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~-~L~~L~l~~~~l~-~l~~~l~~l~~L~~L~l~~~~~ 553 (794)
++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..++ +|+.|++++|.++ .+|..+..++ |+.|++++|..
T Consensus 131 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l 209 (313)
T 1ogq_A 131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNML 209 (313)
T ss_dssp ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEE
T ss_pred eCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcc
Confidence 6666665555666666666666666666666555666666665 6666666666665 5555555555 66666666541
Q ss_pred CCCccccccchhccccCCCCCCCccccCCCCCCCCCCCEEecCCCCCccCCCCccccCCCCCCeEeCCCCCCc-cCchhh
Q 003802 554 QPPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFF-SLPSSI 632 (794)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l 632 (794)
.. .....+..+++|+.|++++|. +++..|. +..+++|++|+|++|.++ .+|..+
T Consensus 210 ~~-----------------------~~~~~~~~l~~L~~L~L~~N~-l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l 264 (313)
T 1ogq_A 210 EG-----------------------DASVLFGSDKNTQKIHLAKNS-LAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGL 264 (313)
T ss_dssp EE-----------------------CCGGGCCTTSCCSEEECCSSE-ECCBGGG-CCCCTTCCEEECCSSCCEECCCGGG
T ss_pred cC-----------------------cCCHHHhcCCCCCEEECCCCc-eeeecCc-ccccCCCCEEECcCCcccCcCChHH
Confidence 10 001124555666666666666 3332332 556666666666666666 566666
Q ss_pred hccCCCCEEecCCCcCCCCCCC
Q 003802 633 NQLLKLKILCLEKCRNLKSLPE 654 (794)
Q Consensus 633 ~~l~~L~~L~L~~n~~~~~~~~ 654 (794)
..+++|++|+|++|++.+.+|.
T Consensus 265 ~~l~~L~~L~Ls~N~l~~~ip~ 286 (313)
T 1ogq_A 265 TQLKFLHSLNVSFNNLCGEIPQ 286 (313)
T ss_dssp GGCTTCCEEECCSSEEEEECCC
T ss_pred hcCcCCCEEECcCCcccccCCC
Confidence 6666666666666665555553
No 45
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.94 E-value=6.4e-27 Score=242.71 Aligned_cols=247 Identities=15% Similarity=0.200 Sum_probs=200.1
Q ss_pred cCcceeeeecCCCCC---CCCCC-CCCCceEEEcCC-CCcc-cccccccccccCceeccCCCcCccCCCC-CCCCCCCCE
Q 003802 378 NNLRYLKWHEYPFNS---LPVSF-RPEKLFKLNLCN-SRIK-YLWKGIKPLKELKFMNLSHSCNLIRTPD-FTGVPNLER 450 (794)
Q Consensus 378 ~~l~~L~~~~~~~~~---l~~~~-~~~~L~~L~L~~-n~i~-~l~~~~~~l~~L~~L~L~~n~~~~~~~~-~~~l~~L~~ 450 (794)
.+++.|++.++.+.. +|..+ .+++|++|++++ |.+. .+|..+.++++|++|++++|.+....|. +..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 468888888888773 66555 678899999984 7777 6788888899999999998888766665 888899999
Q ss_pred EecccccccccccccccCccccccccccccccccccccccCCCC-CccEEEecCCCCCCCCCccccCCCCCcEEEccCcc
Q 003802 451 LNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMK-SLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTA 529 (794)
Q Consensus 451 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~-~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 529 (794)
|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..++ +|++|++++|.+.+..|..+..++ |+.|++++|.
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 99999888888888888899999999999888878888888887 889999999888888888888887 9999999988
Q ss_pred Cc-ccCcccccCCCCCEEEcCCCCCCCCccccccchhccccCCCCCCCccccCCCCCCCCCCCEEecCCCCCccCCCCcc
Q 003802 530 IR-QIPPSIVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSD 608 (794)
Q Consensus 530 l~-~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~ 608 (794)
++ ..|..+..+++|+.|++++|.... ..+.+..+++|++|++++|. +++.+|..
T Consensus 209 l~~~~~~~~~~l~~L~~L~L~~N~l~~------------------------~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~ 263 (313)
T 1ogq_A 209 LEGDASVLFGSDKNTQKIHLAKNSLAF------------------------DLGKVGLSKNLNGLDLRNNR-IYGTLPQG 263 (313)
T ss_dssp EEECCGGGCCTTSCCSEEECCSSEECC------------------------BGGGCCCCTTCCEEECCSSC-CEECCCGG
T ss_pred ccCcCCHHHhcCCCCCEEECCCCceee------------------------ecCcccccCCCCEEECcCCc-ccCcCChH
Confidence 87 556677888899999998886211 11225667889999999988 55668888
Q ss_pred ccCCCCCCeEeCCCCCCc-cCchhhhccCCCCEEecCCCcCCCC
Q 003802 609 IGSLFSLEAIDLSGNNFF-SLPSSINQLLKLKILCLEKCRNLKS 651 (794)
Q Consensus 609 ~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~ 651 (794)
+..+++|++|+|++|.++ .+|.. ..+++|+.|++++|+.+..
T Consensus 264 l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 264 LTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp GGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEES
T ss_pred HhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccC
Confidence 888999999999999888 67754 7888888888988885443
No 46
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=5.7e-26 Score=236.89 Aligned_cols=222 Identities=25% Similarity=0.330 Sum_probs=178.1
Q ss_pred CCceEEEcCCCCcccccccccccccCceeccCCCcCccCCCCCCCCCCCCEEecccccccccccccccCccccccccccc
Q 003802 400 EKLFKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKD 479 (794)
Q Consensus 400 ~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 479 (794)
.++++|++++|.++.+|..+..+++|++|+|++|.+...+..+..+++|++|++++|.+. .+|..+.++++|++|++++
T Consensus 81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~ 159 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRA 159 (328)
T ss_dssp TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEE
T ss_pred cceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCC
Confidence 477888888888888888888888888888888887744444888888888888888766 7788888888888888888
Q ss_pred cccccccccccCC---------CCCccEEEecCCCCCCCCCccccCCCCCcEEEccCccCcccCcccccCCCCCEEEcCC
Q 003802 480 CRNLVSFPKNVCL---------MKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPPSIVQLVNLKIFSLHG 550 (794)
Q Consensus 480 n~~~~~~~~~~~~---------l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~ 550 (794)
|...+.+|..+.. +++|++|++++|.+. .+|..++++++|++|++++|.++.+|..+..+++|++|++++
T Consensus 160 n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~ 238 (328)
T 4fcg_A 160 CPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRG 238 (328)
T ss_dssp ETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTT
T ss_pred CCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcC
Confidence 8888888876654 888999999888776 678888888899999999998888888888888888888888
Q ss_pred CCCCCCccccccchhccccCCCCCCCccccCCCCCCCCCCCEEecCCCCCccCCCCccccCCCCCCeEeCCCCCCc-cCc
Q 003802 551 CKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFF-SLP 629 (794)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp 629 (794)
|..... ....+.++++|+.|++++|. ..+.+|..+..+++|++|+|++|.+. .+|
T Consensus 239 n~~~~~-----------------------~p~~~~~l~~L~~L~L~~n~-~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP 294 (328)
T 4fcg_A 239 CTALRN-----------------------YPPIFGGRAPLKRLILKDCS-NLLTLPLDIHRLTQLEKLDLRGCVNLSRLP 294 (328)
T ss_dssp CTTCCB-----------------------CCCCTTCCCCCCEEECTTCT-TCCBCCTTGGGCTTCCEEECTTCTTCCCCC
T ss_pred Ccchhh-----------------------hHHHhcCCCCCCEEECCCCC-chhhcchhhhcCCCCCEEeCCCCCchhhcc
Confidence 762111 11236778888888888887 55677888888888888888888665 788
Q ss_pred hhhhccCCCCEEecCCCc
Q 003802 630 SSINQLLKLKILCLEKCR 647 (794)
Q Consensus 630 ~~l~~l~~L~~L~L~~n~ 647 (794)
..++++++|+.+++..+.
T Consensus 295 ~~l~~L~~L~~l~l~~~~ 312 (328)
T 4fcg_A 295 SLIAQLPANCIILVPPHL 312 (328)
T ss_dssp GGGGGSCTTCEEECCGGG
T ss_pred HHHhhccCceEEeCCHHH
Confidence 888888888888888654
No 47
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.94 E-value=2.5e-25 Score=239.27 Aligned_cols=261 Identities=15% Similarity=0.104 Sum_probs=164.9
Q ss_pred CCeEEEEEecCCcccccchhhhccCCCCcEEEEcCcccCCCccccccCcceeeeecCCCCCCCCCCCCCCceEEEcCCCC
Q 003802 332 TDAVEAIIVDVPEMTELEAKSFSTMSNLRLLEINNLYSSGNLEYLSNNLRYLKWHEYPFNSLPVSFRPEKLFKLNLCNSR 411 (794)
Q Consensus 332 ~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~~~~~~~~l~~~~~~~~L~~L~L~~n~ 411 (794)
.+.++.+.++.+.+..++...|..+++|++|++++|.+.+..+..+.++ ++|++|++++|.
T Consensus 68 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-------------------~~L~~L~L~~n~ 128 (390)
T 3o6n_A 68 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNV-------------------PLLTVLVLERND 128 (390)
T ss_dssp CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC-------------------TTCCEEECCSSC
T ss_pred cccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCC-------------------CCCCEEECCCCc
Confidence 4678999999999999999999999999999999998887666554332 356666666666
Q ss_pred ccccccc-ccccccCceeccCCCcCccCCCC-CCCCCCCCEEecccccccccccccccCccccccccccccccccccccc
Q 003802 412 IKYLWKG-IKPLKELKFMNLSHSCNLIRTPD-FTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKN 489 (794)
Q Consensus 412 i~~l~~~-~~~l~~L~~L~L~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~ 489 (794)
++.+|.. +.++++|++|++++|.+....+. +..+++|++|++++|.+... .+..+++|++|++++|.+.+
T Consensus 129 l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~----- 200 (390)
T 3o6n_A 129 LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST----- 200 (390)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSE-----
T ss_pred cCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccccc-----
Confidence 6666655 46666666666666666555544 66666666666666654432 24455666666666655332
Q ss_pred cCCCCCccEEEecCCCCCCCCCccccCCCCCcEEEccCccCcccCcccccCCCCCEEEcCCCCCCCCccccccchhcccc
Q 003802 490 VCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPPSIVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLL 569 (794)
Q Consensus 490 ~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 569 (794)
+...++|++|++++|.+... |. ...++|+.|++++|.++.. ..+..+++|++|++++|....
T Consensus 201 ~~~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~Ls~n~l~~-------------- 262 (390)
T 3o6n_A 201 LAIPIAVEELDASHNSINVV-RG--PVNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEK-------------- 262 (390)
T ss_dssp EECCSSCSEEECCSSCCCEE-EC--CCCSSCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCE--------------
T ss_pred cCCCCcceEEECCCCeeeec-cc--cccccccEEECCCCCCccc-HHHcCCCCccEEECCCCcCCC--------------
Confidence 22334566666666655433 22 2235666666666666654 345666666666666665210
Q ss_pred CCCCCCCccccCCCCCCCCCCCEEecCCCCCccCCCCccccCCCCCCeEeCCCCCCccCchhhhccCCCCEEecCCCcC
Q 003802 570 PNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLPSSINQLLKLKILCLEKCRN 648 (794)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~~ 648 (794)
.....+..+++|+.|++++|.+.. +|..+..+++|++|+|++|.++.+|..+..+++|+.|+|++|++
T Consensus 263 ---------~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i 330 (390)
T 3o6n_A 263 ---------IMYHPFVKMQRLERLYISNNRLVA--LNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSI 330 (390)
T ss_dssp ---------EESGGGTTCSSCCEEECCSSCCCE--EECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCC
T ss_pred ---------cChhHccccccCCEEECCCCcCcc--cCcccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCcc
Confidence 011225556666666666666433 45555566666666666666666666666666666666666663
No 48
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.93 E-value=1.7e-26 Score=266.22 Aligned_cols=381 Identities=17% Similarity=0.134 Sum_probs=252.0
Q ss_pred EecCCcccccchhhhccC-CCCcEEEEcCcccCCCccccc---cCcceeeeecCCCCCCCCC-C-CCCCceEEEcCCCCc
Q 003802 339 IVDVPEMTELEAKSFSTM-SNLRLLEINNLYSSGNLEYLS---NNLRYLKWHEYPFNSLPVS-F-RPEKLFKLNLCNSRI 412 (794)
Q Consensus 339 ~l~~~~~~~~~~~~~~~~-~~L~~L~l~~n~~~~~~~~~~---~~l~~L~~~~~~~~~l~~~-~-~~~~L~~L~L~~n~i 412 (794)
..++..+..+|. ++ +++++|+|++|.++...+..| .+|+.|++.+|.+..++.. | .+++|++|+|++|.+
T Consensus 37 ~c~~~~l~~vP~----~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l 112 (635)
T 4g8a_A 37 QCMELNFYKIPD----NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 112 (635)
T ss_dssp ECTTSCCSSCCS----SSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred ECCCCCcCccCC----CCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcC
Confidence 334445555553 23 479999999999987766655 4677788888888877654 4 689999999999999
Q ss_pred cccccc-ccccccCceeccCCCcCccCCCC-CCCCCCCCEEecccccccc-cccccccCccccccccccccccccccccc
Q 003802 413 KYLWKG-IKPLKELKFMNLSHSCNLIRTPD-FTGVPNLERLNLEGCTRLL-EVHQSVGTLKRLILLNLKDCRNLVSFPKN 489 (794)
Q Consensus 413 ~~l~~~-~~~l~~L~~L~L~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~ 489 (794)
+.+|.. |.++++|++|++++|.+...++. |.++++|++|++++|.+.. ..|..++.+++|++|++++|.+.+..|..
T Consensus 113 ~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 192 (635)
T 4g8a_A 113 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 192 (635)
T ss_dssp CEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGG
T ss_pred CCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccccc
Confidence 999865 89999999999999998887776 9999999999999998765 46788899999999999999887766655
Q ss_pred cCCCCC---------------------------ccEEEecCCCCCCC---------------------------------
Q 003802 490 VCLMKS---------------------------LKILCLCGCLKLEK--------------------------------- 509 (794)
Q Consensus 490 ~~~l~~---------------------------L~~L~L~~~~~~~~--------------------------------- 509 (794)
+..+.+ ++.+++.+|.....
T Consensus 193 l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~ 272 (635)
T 4g8a_A 193 LRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDK 272 (635)
T ss_dssp GHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCT
T ss_pred ccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccc
Confidence 432221 12233322211000
Q ss_pred -------------------------CC----------------------ccccCCCCCcEEEccCccCcccCc-------
Q 003802 510 -------------------------LP----------------------QDLGEVECLEELDVGGTAIRQIPP------- 535 (794)
Q Consensus 510 -------------------------~~----------------------~~~~~l~~L~~L~l~~~~l~~l~~------- 535 (794)
.+ ..+....+|+.|++.+|.+..++.
T Consensus 273 ~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~ 352 (635)
T 4g8a_A 273 SALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLK 352 (635)
T ss_dssp TTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCC
T ss_pred cccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhh
Confidence 00 011223345666666655443221
Q ss_pred -------------ccccCCCCCEEEcCCCCCCCCcc----ccccchhccc-----------------------cCCCCCC
Q 003802 536 -------------SIVQLVNLKIFSLHGCKGQPPKI----LSSNFFLSLL-----------------------LPNKNSD 575 (794)
Q Consensus 536 -------------~l~~l~~L~~L~l~~~~~~~~~~----~~~~~~~~~~-----------------------~~~~~~~ 575 (794)
....+++|+.|++++|....... ......+... ....+..
T Consensus 353 ~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~ 432 (635)
T 4g8a_A 353 RLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNL 432 (635)
T ss_dssp EEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEE
T ss_pred hcccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhccc
Confidence 12346788888888876321111 0000000000 0111111
Q ss_pred CccccCCCCCCCCCCCEEecCCCCCccCCCCccccCCCCCCeEeCCCCCCc--cCchhhhccCCCCEEecCCCcCCCCCC
Q 003802 576 SMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFF--SLPSSINQLLKLKILCLEKCRNLKSLP 653 (794)
Q Consensus 576 ~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~--~lp~~l~~l~~L~~L~L~~n~~~~~~~ 653 (794)
........+..+++++.++++.|. +.+..+..+..+++|+.|++++|.+. ..|..+..+++|++|+|++|++....|
T Consensus 433 ~~~~~~~~~~~l~~l~~l~ls~n~-l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~ 511 (635)
T 4g8a_A 433 KQMSEFSVFLSLRNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP 511 (635)
T ss_dssp ESTTSSCTTTTCTTCCEEECTTSC-CEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT
T ss_pred cccccccccccccccccccccccc-cccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcCh
Confidence 111222346677788888888887 55566777788888999999888644 356678888899999999987554444
Q ss_pred CCCccccccccccccccccccccccccCCCCceEEEeCCCCchhhhhhhhhHHHHHHHHHHhhh-ccccccCcccccccc
Q 003802 654 ELPPEIVFVGAEDCTSLETISAFAKLSRSPNIALNFLNCFKLVEDQVSKDNLAVTLMKQWLLSY-HSLVAWTDSTRRFNV 732 (794)
Q Consensus 654 ~~~~~L~~L~l~~~~~L~~l~~~~n~~~~~~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~~~-~~l~~~~~~~~~~~~ 732 (794)
. .+.++++|+.|++++| .+....+..+.++++|++|++++|++++..+. .+..+ ..+..+....|.|.+
T Consensus 512 ~--------~f~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~l~~l~~~L~~L~L~~Np~~C 581 (635)
T 4g8a_A 512 T--------AFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ-ELQHFPSSLAFLNLTQNDFAC 581 (635)
T ss_dssp T--------TTTTCTTCCEEECTTS-CCCBCCCGGGTTCTTCCEEECTTSCCCBCCSS-CTTCCCTTCCEEECTTCCBCC
T ss_pred H--------HHcCCCCCCEEECCCC-cCCCCChhHHhCCCCCCEEECCCCcCCCCCHH-HHHhhhCcCCEEEeeCCCCcc
Confidence 3 3567888999999888 55555666788999999999999998754322 22233 345555555555554
Q ss_pred cc
Q 003802 733 NY 734 (794)
Q Consensus 733 ~~ 734 (794)
.+
T Consensus 582 ~C 583 (635)
T 4g8a_A 582 TC 583 (635)
T ss_dssp SG
T ss_pred cC
Confidence 43
No 49
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.93 E-value=8.5e-25 Score=229.30 Aligned_cols=285 Identities=17% Similarity=0.160 Sum_probs=226.8
Q ss_pred CCcEEEEcCcccCCCccccccCcceeeeecCCCCCCCCC-C-CCCCceEEEcCCCCcccc-cccccccccCceeccCCCc
Q 003802 358 NLRLLEINNLYSSGNLEYLSNNLRYLKWHEYPFNSLPVS-F-RPEKLFKLNLCNSRIKYL-WKGIKPLKELKFMNLSHSC 434 (794)
Q Consensus 358 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~~~~~~~~l~~~-~-~~~~L~~L~L~~n~i~~l-~~~~~~l~~L~~L~L~~n~ 434 (794)
+++.++++++.+.........+++.|++.++.+..++.. + .+++|++|++++|.++.+ |..+..+++|++|++++|.
T Consensus 32 ~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 111 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111 (330)
T ss_dssp ETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC
T ss_pred CCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCc
Confidence 678888888877765555567888888888888887763 3 678999999999999988 7789999999999999998
Q ss_pred CccCCCCCCCCCCCCEEecccccccccccccccCcccccccccccccccc--ccccccCCCCCccEEEecCCCCCCCCCc
Q 003802 435 NLIRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLV--SFPKNVCLMKSLKILCLCGCLKLEKLPQ 512 (794)
Q Consensus 435 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~--~~~~~~~~l~~L~~L~L~~~~~~~~~~~ 512 (794)
+...+..+. ++|++|++++|.+.+..+..+.++++|++|++++|.+.. ..+..+..+++|++|++++|.+.. +|.
T Consensus 112 l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~ 188 (330)
T 1xku_A 112 LKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQ 188 (330)
T ss_dssp CSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCS
T ss_pred CCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCc
Confidence 876555443 799999999999887777789999999999999998753 667788999999999999988765 555
Q ss_pred cccCCCCCcEEEccCccCccc-CcccccCCCCCEEEcCCCCCCCCccccccchhccccCCCCCCCccccCCCCCCCCCCC
Q 003802 513 DLGEVECLEELDVGGTAIRQI-PPSIVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQ 591 (794)
Q Consensus 513 ~~~~l~~L~~L~l~~~~l~~l-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 591 (794)
.+. ++|++|++++|.++.+ |..+..+++|++|++++|.... .....+..+++|+
T Consensus 189 ~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-----------------------~~~~~~~~l~~L~ 243 (330)
T 1xku_A 189 GLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA-----------------------VDNGSLANTPHLR 243 (330)
T ss_dssp SCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCE-----------------------ECTTTGGGSTTCC
T ss_pred ccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCce-----------------------eChhhccCCCCCC
Confidence 443 8999999999999966 5788999999999999987321 1112467789999
Q ss_pred EEecCCCCCccCCCCccccCCCCCCeEeCCCCCCccCchh-hh------ccCCCCEEecCCCcCCCCCCCCCcccccccc
Q 003802 592 TLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLPSS-IN------QLLKLKILCLEKCRNLKSLPELPPEIVFVGA 664 (794)
Q Consensus 592 ~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~-l~------~l~~L~~L~L~~n~~~~~~~~~~~~L~~L~l 664 (794)
+|++++|.+. .+|..+..+++|++|++++|.++.+|.. +. ..+.|+.|++++|+.... .+++. .+
T Consensus 244 ~L~L~~N~l~--~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~--~i~~~----~f 315 (330)
T 1xku_A 244 ELHLNNNKLV--KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYW--EIQPS----TF 315 (330)
T ss_dssp EEECCSSCCS--SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGG--GSCGG----GG
T ss_pred EEECCCCcCc--cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCccccc--ccCcc----cc
Confidence 9999999965 4888999999999999999999987653 22 347899999999985421 11111 34
Q ss_pred cccccccccccccc
Q 003802 665 EDCTSLETISAFAK 678 (794)
Q Consensus 665 ~~~~~L~~l~~~~n 678 (794)
..+..++.+++.+|
T Consensus 316 ~~~~~l~~l~L~~N 329 (330)
T 1xku_A 316 RCVYVRAAVQLGNY 329 (330)
T ss_dssp TTCCCGGGEEC---
T ss_pred ccccceeEEEeccc
Confidence 66778888877665
No 50
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=3.4e-25 Score=251.41 Aligned_cols=277 Identities=18% Similarity=0.128 Sum_probs=165.5
Q ss_pred CCeEEEEEecCCcccccchhhhccCCCCcEEEEcCcccCCCcccccc---CcceeeeecCCCCCCCCCC--CCCCceEEE
Q 003802 332 TDAVEAIIVDVPEMTELEAKSFSTMSNLRLLEINNLYSSGNLEYLSN---NLRYLKWHEYPFNSLPVSF--RPEKLFKLN 406 (794)
Q Consensus 332 ~~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~---~l~~L~~~~~~~~~l~~~~--~~~~L~~L~ 406 (794)
...++.+.++.+.+..+++..|..+++|++|++++|.+.+..+..+. +|+.|++.++.+..+|..+ .+++|++|+
T Consensus 74 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 153 (597)
T 3oja_B 74 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLS 153 (597)
T ss_dssp CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEE
Confidence 46789999999999999999999999999999999999887766543 4555555555555555442 455666666
Q ss_pred cCCCCcccccc-cccccccCceeccCCCcCccCCCCCCCCCCCCEEecccccccccccccccCccccccccccccccccc
Q 003802 407 LCNSRIKYLWK-GIKPLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVS 485 (794)
Q Consensus 407 L~~n~i~~l~~-~~~~l~~L~~L~L~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 485 (794)
+++|.++.++. .+..+++|++|++++|.+... .+..+++|+.|++++|.+.+ +...++|++|++++|.+..
T Consensus 154 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n~l~~- 225 (597)
T 3oja_B 154 MSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV--DLSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINV- 225 (597)
T ss_dssp CCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC--CGGGCTTCSEEECCSSCCSE-----EECCTTCSEEECCSSCCCE-
T ss_pred eeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc--ChhhhhhhhhhhcccCcccc-----ccCCchhheeeccCCcccc-
Confidence 66666665543 356666666666666654433 23445566666666654332 2233456666666655332
Q ss_pred cccccCCCCCccEEEecCCCCCCCCCccccCCCCCcEEEccCccCccc-CcccccCCCCCEEEcCCCCCCCCccccccch
Q 003802 486 FPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQI-PPSIVQLVNLKIFSLHGCKGQPPKILSSNFF 564 (794)
Q Consensus 486 ~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 564 (794)
+|..+ .++|++|++++|.+.+ +..+..+++|+.|++++|.++.+ |..++.+++|+.|++++|.....
T Consensus 226 ~~~~~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l-------- 293 (597)
T 3oja_B 226 VRGPV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-------- 293 (597)
T ss_dssp EECSC--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEE--------
T ss_pred ccccc--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCC--------
Confidence 22221 2456666666665554 24455666666666666666533 45555666666666666542100
Q ss_pred hccccCCCCCCCccccCCCCCCCCCCCEEecCCCCCccCCCCccccCCCCCCeEeCCCCCCccCchhhhccCCCCEEecC
Q 003802 565 LSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLPSSINQLLKLKILCLE 644 (794)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~ 644 (794)
...+..+++|+.|+|++|.+.. +|..+..+++|+.|+|++|.++.+| +..+++|+.|+|+
T Consensus 294 ----------------~~~~~~l~~L~~L~Ls~N~l~~--i~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~L~~L~l~ 353 (597)
T 3oja_B 294 ----------------NLYGQPIPTLKVLDLSHNHLLH--VERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLS 353 (597)
T ss_dssp ----------------ECSSSCCTTCCEEECCSSCCCC--CGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECC
T ss_pred ----------------CcccccCCCCcEEECCCCCCCc--cCcccccCCCCCEEECCCCCCCCcC--hhhcCCCCEEEee
Confidence 0113345566666666666432 5555556666666666666666554 4555666666666
Q ss_pred CCcC
Q 003802 645 KCRN 648 (794)
Q Consensus 645 ~n~~ 648 (794)
+|+.
T Consensus 354 ~N~~ 357 (597)
T 3oja_B 354 HNDW 357 (597)
T ss_dssp SSCE
T ss_pred CCCC
Confidence 6653
No 51
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.93 E-value=2.7e-25 Score=233.21 Aligned_cols=284 Identities=18% Similarity=0.176 Sum_probs=225.5
Q ss_pred CCcEEEEcCcccCCCccccccCcceeeeecCCCCCCCC-CC-CCCCceEEEcCCCCcccc-cccccccccCceeccCCCc
Q 003802 358 NLRLLEINNLYSSGNLEYLSNNLRYLKWHEYPFNSLPV-SF-RPEKLFKLNLCNSRIKYL-WKGIKPLKELKFMNLSHSC 434 (794)
Q Consensus 358 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~~~~~~~~l~~-~~-~~~~L~~L~L~~n~i~~l-~~~~~~l~~L~~L~L~~n~ 434 (794)
+++.++++++.+.......+.+++.|++.++.+..++. .+ .+++|++|++++|.++.+ |..+.++++|++|++++|.
T Consensus 34 ~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 113 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH 113 (332)
T ss_dssp ETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSC
T ss_pred cCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCc
Confidence 68899999888876655566789999999988887754 34 788999999999999988 6779999999999999998
Q ss_pred CccCCCCCCCCCCCCEEecccccccccccccccCccccccccccccccc--cccccccCCCCCccEEEecCCCCCCCCCc
Q 003802 435 NLIRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNL--VSFPKNVCLMKSLKILCLCGCLKLEKLPQ 512 (794)
Q Consensus 435 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~--~~~~~~~~~l~~L~~L~L~~~~~~~~~~~ 512 (794)
+...++.+. ++|++|++++|.+....+..+..+++|++|++++|.+. +..|..+..+ +|++|++++|.+.+ +|.
T Consensus 114 l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~ 189 (332)
T 2ft3_A 114 LVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPK 189 (332)
T ss_dssp CCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCS
T ss_pred CCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCc
Confidence 876555544 89999999999887766677999999999999999875 3667777777 99999999998776 555
Q ss_pred cccCCCCCcEEEccCccCcccC-cccccCCCCCEEEcCCCCCCCCccccccchhccccCCCCCCCccccCCCCCCCCCCC
Q 003802 513 DLGEVECLEELDVGGTAIRQIP-PSIVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQ 591 (794)
Q Consensus 513 ~~~~l~~L~~L~l~~~~l~~l~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 591 (794)
.+. ++|++|++++|.++.++ ..+..+++|+.|++++|..... ....+..+++|+
T Consensus 190 ~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~-----------------------~~~~~~~l~~L~ 244 (332)
T 2ft3_A 190 DLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMI-----------------------ENGSLSFLPTLR 244 (332)
T ss_dssp SSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCC-----------------------CTTGGGGCTTCC
T ss_pred ccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcC-----------------------ChhHhhCCCCCC
Confidence 443 79999999999999776 6788999999999999873211 112367789999
Q ss_pred EEecCCCCCccCCCCccccCCCCCCeEeCCCCCCccCchh-hhc------cCCCCEEecCCCcCCCCCCCCCcccccccc
Q 003802 592 TLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLPSS-INQ------LLKLKILCLEKCRNLKSLPELPPEIVFVGA 664 (794)
Q Consensus 592 ~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~-l~~------l~~L~~L~L~~n~~~~~~~~~~~~L~~L~l 664 (794)
.|++++|.+. .+|..+..+++|+.|++++|.++.+|.. +.. .++|+.|++++|+.... .+++ -.+
T Consensus 245 ~L~L~~N~l~--~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~--~~~~----~~~ 316 (332)
T 2ft3_A 245 ELHLDNNKLS--RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYW--EVQP----ATF 316 (332)
T ss_dssp EEECCSSCCC--BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGG--GSCG----GGG
T ss_pred EEECCCCcCe--ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCccccc--ccCc----ccc
Confidence 9999999965 4888899999999999999999977643 322 47799999999985421 1111 135
Q ss_pred cccccccccccccc
Q 003802 665 EDCTSLETISAFAK 678 (794)
Q Consensus 665 ~~~~~L~~l~~~~n 678 (794)
.++++|+.+++.+|
T Consensus 317 ~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 317 RCVTDRLAIQFGNY 330 (332)
T ss_dssp TTBCCSTTEEC---
T ss_pred cccchhhhhhcccc
Confidence 66788888877655
No 52
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.93 E-value=4.2e-25 Score=230.36 Aligned_cols=223 Identities=22% Similarity=0.299 Sum_probs=196.3
Q ss_pred ccccCceeccCCCcCccCCCCCCCCCCCCEEecccccccccccccccCccccccccccccccccccccccCCCCCccEEE
Q 003802 421 PLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILC 500 (794)
Q Consensus 421 ~l~~L~~L~L~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 500 (794)
..++++.|++++|.+...++.+..+++|++|++++|.+. .+|..++.+++|++|++++|.+. .+|..++.+++|++|+
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS 156 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence 358999999999998876666888999999999999877 88999999999999999999876 8899999999999999
Q ss_pred ecCCCCCCCCCccccC---------CCCCcEEEccCccCcccCcccccCCCCCEEEcCCCCCCCCccccccchhccccCC
Q 003802 501 LCGCLKLEKLPQDLGE---------VECLEELDVGGTAIRQIPPSIVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPN 571 (794)
Q Consensus 501 L~~~~~~~~~~~~~~~---------l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 571 (794)
+++|...+.+|..+.. +++|++|++++|.++.+|..++++++|++|++++|.....
T Consensus 157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l--------------- 221 (328)
T 4fcg_A 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSAL--------------- 221 (328)
T ss_dssp EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCC---------------
T ss_pred CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcC---------------
Confidence 9999999999887764 9999999999999999999999999999999999973210
Q ss_pred CCCCCccccCCCCCCCCCCCEEecCCCCCccCCCCccccCCCCCCeEeCCCCCCc-cCchhhhccCCCCEEecCCCcCCC
Q 003802 572 KNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFF-SLPSSINQLLKLKILCLEKCRNLK 650 (794)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~ 650 (794)
.+.+..+++|++|++++|. ..+.+|..++.+++|++|+|++|.+. .+|..+..+++|++|+|++|+..+
T Consensus 222 ---------~~~l~~l~~L~~L~Ls~n~-~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~ 291 (328)
T 4fcg_A 222 ---------GPAIHHLPKLEELDLRGCT-ALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLS 291 (328)
T ss_dssp ---------CGGGGGCTTCCEEECTTCT-TCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCC
T ss_pred ---------chhhccCCCCCEEECcCCc-chhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchh
Confidence 1236778999999999999 56678999999999999999999766 889999999999999999999998
Q ss_pred CCCCCCcccccccccccccccccccccc
Q 003802 651 SLPELPPEIVFVGAEDCTSLETISAFAK 678 (794)
Q Consensus 651 ~~~~~~~~L~~L~l~~~~~L~~l~~~~n 678 (794)
.+|. .+.++++|+.+.+..+
T Consensus 292 ~iP~--------~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 292 RLPS--------LIAQLPANCIILVPPH 311 (328)
T ss_dssp CCCG--------GGGGSCTTCEEECCGG
T ss_pred hccH--------HHhhccCceEEeCCHH
Confidence 8886 4566777777776655
No 53
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.92 E-value=5.1e-25 Score=233.27 Aligned_cols=271 Identities=14% Similarity=0.094 Sum_probs=154.8
Q ss_pred CCcEEEEcCcccCCCccccccCcceeeeecCCCCCCCC-CC-CCCCceEEEcCCCCccccc-ccccccccCceeccCCCc
Q 003802 358 NLRLLEINNLYSSGNLEYLSNNLRYLKWHEYPFNSLPV-SF-RPEKLFKLNLCNSRIKYLW-KGIKPLKELKFMNLSHSC 434 (794)
Q Consensus 358 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~~~~~~~~l~~-~~-~~~~L~~L~L~~n~i~~l~-~~~~~l~~L~~L~L~~n~ 434 (794)
.....+.+++.++......+.+++.|++.++.+..++. .+ .+++|++|++++|.++.++ ..+.++++|++|++++|.
T Consensus 32 ~~~~c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 111 (353)
T 2z80_A 32 RNGICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 111 (353)
T ss_dssp TTSEEECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CCeEeeCCCCCcccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc
Confidence 33344555555544433344455555555555554443 12 4556777777777766664 346667777777777776
Q ss_pred CccCCCC-CCCCCCCCEEeccccccccccc-ccccCccccccccccccc-cccccccccCCCCCccEEEecCCCCCCCCC
Q 003802 435 NLIRTPD-FTGVPNLERLNLEGCTRLLEVH-QSVGTLKRLILLNLKDCR-NLVSFPKNVCLMKSLKILCLCGCLKLEKLP 511 (794)
Q Consensus 435 ~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~ 511 (794)
+...++. +.++++|++|++++|.+....+ ..+..+++|++|++++|. +....+..+..+++|++|++++|.+.+..|
T Consensus 112 l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 191 (353)
T 2z80_A 112 LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEP 191 (353)
T ss_dssp CSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECT
T ss_pred CCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCH
Confidence 6555544 6666777777777765543222 256666777777777664 333334556666777777777766666666
Q ss_pred ccccCCCCCcEEEccCccCcccCccc-ccCCCCCEEEcCCCCCCCCccccccchhccccCCCCCCCccccCCCCCCCCCC
Q 003802 512 QDLGEVECLEELDVGGTAIRQIPPSI-VQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSL 590 (794)
Q Consensus 512 ~~~~~l~~L~~L~l~~~~l~~l~~~l-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 590 (794)
..+..+++|++|++++|.++.+|..+ ..+++|+.|++++|...... ...+........+
T Consensus 192 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~--------------------~~~l~~~~~~~~l 251 (353)
T 2z80_A 192 KSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFH--------------------FSELSTGETNSLI 251 (353)
T ss_dssp TTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCC--------------------CC------CCCCC
T ss_pred HHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccc--------------------ccccccccccchh
Confidence 66667777777777777666655443 34666777777666521100 0011112234456
Q ss_pred CEEecCCCCCccC---CCCccccCCCCCCeEeCCCCCCccCchhh-hccCCCCEEecCCCcC
Q 003802 591 QTLDLSDCNLLEG---AIPSDIGSLFSLEAIDLSGNNFFSLPSSI-NQLLKLKILCLEKCRN 648 (794)
Q Consensus 591 ~~L~l~~n~~~~~---~~~~~~~~l~~L~~L~L~~n~l~~lp~~l-~~l~~L~~L~L~~n~~ 648 (794)
+.++++++.+... .+|..+..+++|++|++++|+++.+|..+ ..+++|++|+|++|+.
T Consensus 252 ~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~ 313 (353)
T 2z80_A 252 KKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPW 313 (353)
T ss_dssp CEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred hccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCc
Confidence 6666666652111 24555666666677777666666666553 6666666666666653
No 54
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.91 E-value=1.2e-23 Score=229.61 Aligned_cols=244 Identities=21% Similarity=0.224 Sum_probs=201.4
Q ss_pred cceeeeecCCCCCCCCCCCCCCceEEEcCCCCccccc-ccccccccCceeccCCCcCccCCCC-CCCCCCCCEEeccccc
Q 003802 380 LRYLKWHEYPFNSLPVSFRPEKLFKLNLCNSRIKYLW-KGIKPLKELKFMNLSHSCNLIRTPD-FTGVPNLERLNLEGCT 457 (794)
Q Consensus 380 l~~L~~~~~~~~~l~~~~~~~~L~~L~L~~n~i~~l~-~~~~~l~~L~~L~L~~n~~~~~~~~-~~~l~~L~~L~l~~~~ 457 (794)
.+.+...+..+..+|..+. .++++|+|++|.++.++ ..|.++++|++|+|++|.+....+. |.++++|++|+|++|.
T Consensus 45 ~~~v~c~~~~l~~iP~~~~-~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~ 123 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGIS-TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123 (440)
T ss_dssp SCEEECCSCCCSSCCSCCC-TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC
T ss_pred CCEEEeCCCCcCcCCCCCC-CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc
Confidence 3456666667777777664 68999999999999886 5689999999999999988777665 8899999999999998
Q ss_pred ccccccccccCccccccccccccccccccccccCCCCCccEEEecCCCCCCCCCc-cccCCCCCcEEEccCccCcccCcc
Q 003802 458 RLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQ-DLGEVECLEELDVGGTAIRQIPPS 536 (794)
Q Consensus 458 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~~l~~~ 536 (794)
+....+..+..+++|++|++++|.+....+..+..+++|++|++++|...+.++. .|.++++|++|++++|.++.+|.
T Consensus 124 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~- 202 (440)
T 3zyj_A 124 LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN- 202 (440)
T ss_dssp CSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCC-
T ss_pred CCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccc-
Confidence 7766666789999999999999987766667888999999999999777666554 58899999999999999998884
Q ss_pred cccCCCCCEEEcCCCCCCCCccccccchhccccCCCCCCCccccCCCCCCCCCCCEEecCCCCCccCCCCccccCCCCCC
Q 003802 537 IVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLE 616 (794)
Q Consensus 537 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~ 616 (794)
+..+++|+.|++++|... ......+.++++|+.|++++|. +++..+..|..+++|+
T Consensus 203 ~~~l~~L~~L~Ls~N~l~-----------------------~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~ 258 (440)
T 3zyj_A 203 LTPLIKLDELDLSGNHLS-----------------------AIRPGSFQGLMHLQKLWMIQSQ-IQVIERNAFDNLQSLV 258 (440)
T ss_dssp CTTCSSCCEEECTTSCCC-----------------------EECTTTTTTCTTCCEEECTTCC-CCEECTTSSTTCTTCC
T ss_pred cCCCcccCEEECCCCccC-----------------------ccChhhhccCccCCEEECCCCc-eeEEChhhhcCCCCCC
Confidence 788999999999998722 1112347888999999999998 6666778889999999
Q ss_pred eEeCCCCCCccCchh-hhccCCCCEEecCCCcCC
Q 003802 617 AIDLSGNNFFSLPSS-INQLLKLKILCLEKCRNL 649 (794)
Q Consensus 617 ~L~L~~n~l~~lp~~-l~~l~~L~~L~L~~n~~~ 649 (794)
.|+|++|+++.+|.. +..+++|+.|+|++|+..
T Consensus 259 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 259 EINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp EEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred EEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 999999999977654 578999999999999853
No 55
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.91 E-value=5e-24 Score=220.91 Aligned_cols=241 Identities=20% Similarity=0.240 Sum_probs=152.6
Q ss_pred eeeeecCCCCCCCCCCCCCCceEEEcCCCCccccccc-ccccccCceeccCCCcCccCC---CCCCCCCCCCEEeccccc
Q 003802 382 YLKWHEYPFNSLPVSFRPEKLFKLNLCNSRIKYLWKG-IKPLKELKFMNLSHSCNLIRT---PDFTGVPNLERLNLEGCT 457 (794)
Q Consensus 382 ~L~~~~~~~~~l~~~~~~~~L~~L~L~~n~i~~l~~~-~~~l~~L~~L~L~~n~~~~~~---~~~~~l~~L~~L~l~~~~ 457 (794)
.++..+..+..+|..++ ++|++|++++|.++.+|.. +.++++|++|++++|.+.... ..+..+++|++|++++|.
T Consensus 11 ~l~c~~~~l~~ip~~~~-~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~ 89 (306)
T 2z66_A 11 EIRCNSKGLTSVPTGIP-SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG 89 (306)
T ss_dssp EEECCSSCCSSCCSCCC-TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS
T ss_pred EEEcCCCCcccCCCCCC-CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc
Confidence 45555555666665443 5777777777777777665 577777777777777655331 224556777777777766
Q ss_pred ccccccccccCccccccccccccccccccc-cccCCCCCccEEEecCCCCCCCCCccccCCCCCcEEEccCccCcc--cC
Q 003802 458 RLLEVHQSVGTLKRLILLNLKDCRNLVSFP-KNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQ--IP 534 (794)
Q Consensus 458 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~--l~ 534 (794)
+. .+|..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.++. +|
T Consensus 90 i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 168 (306)
T 2z66_A 90 VI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP 168 (306)
T ss_dssp EE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEEC
T ss_pred cc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccch
Confidence 54 455567777777777777776554433 456677777777777777766666667777777777777777664 56
Q ss_pred cccccCCCCCEEEcCCCCCCCCccccccchhccccCCCCCCCccccCCCCCCCCCCCEEecCCCCCccCCCCccccCCCC
Q 003802 535 PSIVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFS 614 (794)
Q Consensus 535 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~ 614 (794)
..+..+++|++|++++|... ......+..+++|+.|++++|. +++..+..+..+++
T Consensus 169 ~~~~~l~~L~~L~Ls~n~l~-----------------------~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~ 224 (306)
T 2z66_A 169 DIFTELRNLTFLDLSQCQLE-----------------------QLSPTAFNSLSSLQVLNMSHNN-FFSLDTFPYKCLNS 224 (306)
T ss_dssp SCCTTCTTCCEEECTTSCCC-----------------------EECTTTTTTCTTCCEEECTTSC-CSBCCSGGGTTCTT
T ss_pred hHHhhCcCCCEEECCCCCcC-----------------------CcCHHHhcCCCCCCEEECCCCc-cCccChhhccCccc
Confidence 66666777777777666521 0011235556666777776666 33334445666666
Q ss_pred CCeEeCCCCCCcc-CchhhhccC-CCCEEecCCCcC
Q 003802 615 LEAIDLSGNNFFS-LPSSINQLL-KLKILCLEKCRN 648 (794)
Q Consensus 615 L~~L~L~~n~l~~-lp~~l~~l~-~L~~L~L~~n~~ 648 (794)
|+.|++++|.++. .|..+..++ +|++|+|++|++
T Consensus 225 L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~ 260 (306)
T 2z66_A 225 LQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260 (306)
T ss_dssp CCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCE
T ss_pred CCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCe
Confidence 7777777666663 344555553 666666666663
No 56
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.91 E-value=1.4e-23 Score=230.10 Aligned_cols=243 Identities=22% Similarity=0.209 Sum_probs=197.5
Q ss_pred ceeeeecCCCCCCCCCCCCCCceEEEcCCCCcccc-cccccccccCceeccCCCcCccCCCC-CCCCCCCCEEecccccc
Q 003802 381 RYLKWHEYPFNSLPVSFRPEKLFKLNLCNSRIKYL-WKGIKPLKELKFMNLSHSCNLIRTPD-FTGVPNLERLNLEGCTR 458 (794)
Q Consensus 381 ~~L~~~~~~~~~l~~~~~~~~L~~L~L~~n~i~~l-~~~~~~l~~L~~L~L~~n~~~~~~~~-~~~l~~L~~L~l~~~~~ 458 (794)
..+...+..+..+|..++ +++++|+|++|.++.+ +..|.++++|++|+|++|.+....+. |.++++|++|+|++|.+
T Consensus 57 ~~v~c~~~~l~~iP~~~~-~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l 135 (452)
T 3zyi_A 57 SKVVCTRRGLSEVPQGIP-SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWL 135 (452)
T ss_dssp CEEECCSSCCSSCCSCCC-TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred cEEEECCCCcCccCCCCC-CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcC
Confidence 455566666777776553 6899999999999987 45689999999999999988877765 88999999999999987
Q ss_pred cccccccccCccccccccccccccccccccccCCCCCccEEEecCCCCCCCCCc-cccCCCCCcEEEccCccCcccCccc
Q 003802 459 LLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQ-DLGEVECLEELDVGGTAIRQIPPSI 537 (794)
Q Consensus 459 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~~l~~~l 537 (794)
....+..+..+++|++|++++|.+....+..+..+++|++|++++|...+.++. .|.++++|+.|++++|.++.+| .+
T Consensus 136 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~ 214 (452)
T 3zyi_A 136 TVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-NL 214 (452)
T ss_dssp SBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC-CC
T ss_pred CccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc-cc
Confidence 766667788999999999999987766666788999999999999777766654 5888999999999999999887 47
Q ss_pred ccCCCCCEEEcCCCCCCCCccccccchhccccCCCCCCCccccCCCCCCCCCCCEEecCCCCCccCCCCccccCCCCCCe
Q 003802 538 VQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEA 617 (794)
Q Consensus 538 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~ 617 (794)
..+++|+.|++++|.... .....+.++++|+.|++++|. +++..+..+..+++|+.
T Consensus 215 ~~l~~L~~L~Ls~N~l~~-----------------------~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~ 270 (452)
T 3zyi_A 215 TPLVGLEELEMSGNHFPE-----------------------IRPGSFHGLSSLKKLWVMNSQ-VSLIERNAFDGLASLVE 270 (452)
T ss_dssp TTCTTCCEEECTTSCCSE-----------------------ECGGGGTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCE
T ss_pred cccccccEEECcCCcCcc-----------------------cCcccccCccCCCEEEeCCCc-CceECHHHhcCCCCCCE
Confidence 788999999999887221 111337788899999999998 56666778888999999
Q ss_pred EeCCCCCCccCchh-hhccCCCCEEecCCCcCC
Q 003802 618 IDLSGNNFFSLPSS-INQLLKLKILCLEKCRNL 649 (794)
Q Consensus 618 L~L~~n~l~~lp~~-l~~l~~L~~L~L~~n~~~ 649 (794)
|+|++|+++.+|.. +..+++|+.|+|++|+..
T Consensus 271 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 271 LNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp EECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred EECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 99999999977654 578899999999998743
No 57
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.91 E-value=2.2e-24 Score=223.67 Aligned_cols=242 Identities=21% Similarity=0.265 Sum_probs=183.8
Q ss_pred EEEEcCcccCCCccccccCcceeeeecCCCCCCCCCC--CCCCceEEEcCCCCcccc---cccccccccCceeccCCCcC
Q 003802 361 LLEINNLYSSGNLEYLSNNLRYLKWHEYPFNSLPVSF--RPEKLFKLNLCNSRIKYL---WKGIKPLKELKFMNLSHSCN 435 (794)
Q Consensus 361 ~L~l~~n~~~~~~~~~~~~l~~L~~~~~~~~~l~~~~--~~~~L~~L~L~~n~i~~l---~~~~~~l~~L~~L~L~~n~~ 435 (794)
.++.+++.++......+.+++.|++.++.+..++... .+++|++|++++|.++.+ +..+..+++|++|++++|.+
T Consensus 11 ~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i 90 (306)
T 2z66_A 11 EIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGV 90 (306)
T ss_dssp EEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSE
T ss_pred EEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCcc
Confidence 4455555554444444456666666666666666542 567888888888888755 45667788888888888877
Q ss_pred ccCCCCCCCCCCCCEEeccccccccccc-ccccCccccccccccccccccccccccCCCCCccEEEecCCCCCC-CCCcc
Q 003802 436 LIRTPDFTGVPNLERLNLEGCTRLLEVH-QSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLE-KLPQD 513 (794)
Q Consensus 436 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~~~~~~-~~~~~ 513 (794)
...++.+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+ ..|..
T Consensus 91 ~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 170 (306)
T 2z66_A 91 ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI 170 (306)
T ss_dssp EEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSC
T ss_pred ccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhH
Confidence 7655557788888888888887665544 567888888888888888777777788888889999998888776 56778
Q ss_pred ccCCCCCcEEEccCccCccc-CcccccCCCCCEEEcCCCCCCCCccccccchhccccCCCCCCCccccCCCCCCCCCCCE
Q 003802 514 LGEVECLEELDVGGTAIRQI-PPSIVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQT 592 (794)
Q Consensus 514 ~~~l~~L~~L~l~~~~l~~l-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 592 (794)
+..+++|++|++++|.++.+ |..+..+++|++|++++|..... ....+..+++|+.
T Consensus 171 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-----------------------~~~~~~~l~~L~~ 227 (306)
T 2z66_A 171 FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL-----------------------DTFPYKCLNSLQV 227 (306)
T ss_dssp CTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBC-----------------------CSGGGTTCTTCCE
T ss_pred HhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCcc-----------------------ChhhccCcccCCE
Confidence 88888999999999888866 56778888999999988872210 1112667889999
Q ss_pred EecCCCCCccCCCCccccCCC-CCCeEeCCCCCCc
Q 003802 593 LDLSDCNLLEGAIPSDIGSLF-SLEAIDLSGNNFF 626 (794)
Q Consensus 593 L~l~~n~~~~~~~~~~~~~l~-~L~~L~L~~n~l~ 626 (794)
|++++|. +++..|..+..++ +|++|+|++|.++
T Consensus 228 L~L~~N~-l~~~~~~~~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 228 LDYSLNH-IMTSKKQELQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp EECTTSC-CCBCSSSSCCCCCTTCCEEECTTCCEE
T ss_pred eECCCCC-CcccCHHHHHhhhccCCEEEccCCCee
Confidence 9999998 6667778888884 9999999999887
No 58
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.91 E-value=4.4e-27 Score=259.51 Aligned_cols=361 Identities=16% Similarity=0.129 Sum_probs=249.6
Q ss_pred CeEEEEEecCCcccccchhh-hccCCCCcEEEEcCcccCCC----ccccc---cCcceeeeecCCCCCCCC-CC--CCC-
Q 003802 333 DAVEAIIVDVPEMTELEAKS-FSTMSNLRLLEINNLYSSGN----LEYLS---NNLRYLKWHEYPFNSLPV-SF--RPE- 400 (794)
Q Consensus 333 ~~~~~l~l~~~~~~~~~~~~-~~~~~~L~~L~l~~n~~~~~----~~~~~---~~l~~L~~~~~~~~~l~~-~~--~~~- 400 (794)
..++.++++.+.+....... +..+++|++|++++|.+.+. ++..+ .+|+.|++.++.+..... .+ .+.
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 56788999988877666554 88899999999999988743 23333 567777776665433110 01 122
Q ss_pred ---CceEEEcCCCCcc-----cccccccccccCceeccCCCcCccCCCC------CCCCCCCCEEeccccccccc----c
Q 003802 401 ---KLFKLNLCNSRIK-----YLWKGIKPLKELKFMNLSHSCNLIRTPD------FTGVPNLERLNLEGCTRLLE----V 462 (794)
Q Consensus 401 ---~L~~L~L~~n~i~-----~l~~~~~~l~~L~~L~L~~n~~~~~~~~------~~~l~~L~~L~l~~~~~~~~----~ 462 (794)
+|++|++++|.++ .++..+..+++|++|++++|.+....+. ....++|++|++++|.+... +
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 7999999999988 4677889999999999999986543221 33467899999999987764 3
Q ss_pred cccccCccccccccccccccccccccccC-----CCCCccEEEecCCCCCCC----CCccccCCCCCcEEEccCccCccc
Q 003802 463 HQSVGTLKRLILLNLKDCRNLVSFPKNVC-----LMKSLKILCLCGCLKLEK----LPQDLGEVECLEELDVGGTAIRQI 533 (794)
Q Consensus 463 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-----~l~~L~~L~L~~~~~~~~----~~~~~~~l~~L~~L~l~~~~l~~l 533 (794)
+..+..+++|++|++++|.+....+..+. ..++|++|++++|.+... ++..+..+++|++|++++|.++..
T Consensus 163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 242 (461)
T 1z7x_W 163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 242 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChH
Confidence 56677789999999999986554443332 367999999999988764 566778899999999999988742
Q ss_pred ------CcccccCCCCCEEEcCCCCCCCCccccccchhccccCCCCCCCccccCCCCCCCCCCCEEecCCCCCccCCCCc
Q 003802 534 ------PPSIVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPS 607 (794)
Q Consensus 534 ------~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~ 607 (794)
+.....+++|++|++++|......... -...+..+++|++|++++|.+ ++..+.
T Consensus 243 ~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~-------------------l~~~l~~~~~L~~L~Ls~n~i-~~~~~~ 302 (461)
T 1z7x_W 243 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGD-------------------LCRVLRAKESLKELSLAGNEL-GDEGAR 302 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHH-------------------HHHHHHHCTTCCEEECTTCCC-HHHHHH
T ss_pred HHHHHHHHHhcCCCCceEEECcCCCCCHHHHHH-------------------HHHHHhhCCCcceEECCCCCC-chHHHH
Confidence 222335889999999998632110000 001144578999999999984 332222
Q ss_pred ccc-----CCCCCCeEeCCCCCCcc-----CchhhhccCCCCEEecCCCcCCCCCC-CCCcccccccccccccccccccc
Q 003802 608 DIG-----SLFSLEAIDLSGNNFFS-----LPSSINQLLKLKILCLEKCRNLKSLP-ELPPEIVFVGAEDCTSLETISAF 676 (794)
Q Consensus 608 ~~~-----~l~~L~~L~L~~n~l~~-----lp~~l~~l~~L~~L~L~~n~~~~~~~-~~~~~L~~L~l~~~~~L~~l~~~ 676 (794)
.+. ..++|++|++++|.++. ++..+..+++|++|+|++|.+....+ .+...+. ..+++|+.|++.
T Consensus 303 ~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~----~~~~~L~~L~L~ 378 (461)
T 1z7x_W 303 LLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLG----QPGSVLRVLWLA 378 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHT----STTCCCCEEECT
T ss_pred HHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHc----CCCCceEEEECC
Confidence 232 33699999999999883 56677889999999999997432211 0101010 124567777776
Q ss_pred ccccCCC----CceEEEeCCCCchhhhhhhhhHHHHHHHHHHhhhc
Q 003802 677 AKLSRSP----NIALNFLNCFKLVEDQVSKDNLAVTLMKQWLLSYH 718 (794)
Q Consensus 677 ~n~~~~~----~~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~~~~ 718 (794)
+| .... ..+..+..|++|++|++++|+++......+...++
T Consensus 379 ~n-~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~ 423 (461)
T 1z7x_W 379 DC-DVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVR 423 (461)
T ss_dssp TS-CCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHT
T ss_pred CC-CCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhc
Confidence 66 2221 23445677999999999999998877666665443
No 59
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.91 E-value=3.3e-23 Score=227.04 Aligned_cols=242 Identities=19% Similarity=0.169 Sum_probs=199.7
Q ss_pred CceEEEcCCCCcccccccccccccCceeccCCCcCccCCCC-CCCCCCCCEEecccccccccccccccCccccccccccc
Q 003802 401 KLFKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLIRTPD-FTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKD 479 (794)
Q Consensus 401 ~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 479 (794)
....++.+++.++.+|..+. ++|++|+|++|.+....+. |.++++|++|+|++|.+.+..+..|.++++|++|++++
T Consensus 55 ~~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SSCEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCcEEEECCCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 45688999999999998765 6899999999998887766 99999999999999998888888999999999999999
Q ss_pred cccccccccccCCCCCccEEEecCCCCCCCCCccccCCCCCcEEEccC-ccCcccCc-ccccCCCCCEEEcCCCCCCCCc
Q 003802 480 CRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGG-TAIRQIPP-SIVQLVNLKIFSLHGCKGQPPK 557 (794)
Q Consensus 480 n~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~-~~l~~l~~-~l~~l~~L~~L~l~~~~~~~~~ 557 (794)
|.+....+..+..+++|++|+|++|.+....+..|.++++|+.|++++ +.+..++. .+..+++|++|++++|..
T Consensus 133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l---- 208 (452)
T 3zyi_A 133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNI---- 208 (452)
T ss_dssp SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCC----
T ss_pred CcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcc----
Confidence 987766667788999999999999998876677899999999999998 56667765 578899999999999872
Q ss_pred cccccchhccccCCCCCCCccccCCCCCCCCCCCEEecCCCCCccCCCCccccCCCCCCeEeCCCCCCccC-chhhhccC
Q 003802 558 ILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSL-PSSINQLL 636 (794)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l-p~~l~~l~ 636 (794)
..++.+..+++|+.|++++|. +++..|..+.++++|+.|+|++|+++.+ |..+..++
T Consensus 209 ---------------------~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 266 (452)
T 3zyi_A 209 ---------------------KDMPNLTPLVGLEELEMSGNH-FPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLA 266 (452)
T ss_dssp ---------------------SSCCCCTTCTTCCEEECTTSC-CSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred ---------------------cccccccccccccEEECcCCc-CcccCcccccCccCCCEEEeCCCcCceECHHHhcCCC
Confidence 223457788899999999999 6666788899999999999999999955 55688899
Q ss_pred CCCEEecCCCcCCCCCCCCCcccccccccccccccccccccc
Q 003802 637 KLKILCLEKCRNLKSLPELPPEIVFVGAEDCTSLETISAFAK 678 (794)
Q Consensus 637 ~L~~L~L~~n~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~n 678 (794)
+|+.|+|++|++....+. .+..+++|+.|++.+|
T Consensus 267 ~L~~L~L~~N~l~~~~~~--------~~~~l~~L~~L~L~~N 300 (452)
T 3zyi_A 267 SLVELNLAHNNLSSLPHD--------LFTPLRYLVELHLHHN 300 (452)
T ss_dssp TCCEEECCSSCCSCCCTT--------SSTTCTTCCEEECCSS
T ss_pred CCCEEECCCCcCCccChH--------HhccccCCCEEEccCC
Confidence 999999999975432222 1345566666666655
No 60
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.91 E-value=7.7e-23 Score=229.22 Aligned_cols=261 Identities=20% Similarity=0.144 Sum_probs=210.8
Q ss_pred eEEEEEecCCcccccchhhhccCCCCcEEEEcCcccCCCccccccCcceeeeecCCCCCCCCCCCCCCceEEEcCCCCcc
Q 003802 334 AVEAIIVDVPEMTELEAKSFSTMSNLRLLEINNLYSSGNLEYLSNNLRYLKWHEYPFNSLPVSFRPEKLFKLNLCNSRIK 413 (794)
Q Consensus 334 ~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~~~~~~~~l~~~~~~~~L~~L~L~~n~i~ 413 (794)
.++.+.++.+.+..++...+ ++|++|++++|.++. +|..+.+|+.|++.+|.+..+|. .+++|++|++++|.++
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~---~~L~~L~L~~N~l~~-lp~~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~ 114 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLP---AHITTLVIPDNNLTS-LPALPPELRTLEVSGNQLTSLPV--LPPGLLELSIFSNPLT 114 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCC---TTCSEEEECSCCCSC-CCCCCTTCCEEEECSCCCSCCCC--CCTTCCEEEECSCCCC
T ss_pred CCcEEEecCCCcCccChhhC---CCCcEEEecCCCCCC-CCCcCCCCCEEEcCCCcCCcCCC--CCCCCCEEECcCCcCC
Confidence 46788999998887776443 799999999999885 44578899999999999998887 6789999999999999
Q ss_pred cccccccccccCceeccCCCcCccCCCCCCCCCCCCEEecccccccccccccccCccccccccccccccccccccccCCC
Q 003802 414 YLWKGIKPLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLM 493 (794)
Q Consensus 414 ~l~~~~~~l~~L~~L~L~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l 493 (794)
.+|. .+++|++|++++|.+...+.. +++|++|++++|.+.+ +|. .+.+|+.|++++|.+. .+| ..+
T Consensus 115 ~l~~---~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~-~l~---~~~ 180 (622)
T 3g06_A 115 HLPA---LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLT-SLP---MLP 180 (622)
T ss_dssp CCCC---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-CCC---CCC
T ss_pred CCCC---CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCC-CCc---ccC
Confidence 9887 678899999999987665443 4889999999987654 443 3468899999998755 466 457
Q ss_pred CCccEEEecCCCCCCCCCccccCCCCCcEEEccCccCcccCcccccCCCCCEEEcCCCCCCCCccccccchhccccCCCC
Q 003802 494 KSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPPSIVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKN 573 (794)
Q Consensus 494 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 573 (794)
++|++|++++|.+.+ +|. .+++|+.|++++|.++.+|.. +++|+.|++++|...
T Consensus 181 ~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~l~~~---~~~L~~L~Ls~N~L~------------------- 234 (622)
T 3g06_A 181 SGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLT------------------- 234 (622)
T ss_dssp TTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCC---CTTCCEEECCSSCCS-------------------
T ss_pred CCCcEEECCCCCCCC-CCC---ccchhhEEECcCCcccccCCC---CCCCCEEEccCCccC-------------------
Confidence 899999999988765 443 247899999999999988853 588999999998621
Q ss_pred CCCccccCCCCCCCCCCCEEecCCCCCccCCCCccccCCCCCCeEeCCCCCCccCchhhhccCCCCEEecCCCcCCCCCC
Q 003802 574 SDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLPSSINQLLKLKILCLEKCRNLKSLP 653 (794)
Q Consensus 574 ~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~~ 653 (794)
.++ ..+++|+.|++++|.+.. +|. .+++|+.|+|++|+++.+|..+.++++|+.|+|++|++.+..|
T Consensus 235 ------~lp--~~l~~L~~L~Ls~N~L~~--lp~---~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l~~~~~ 301 (622)
T 3g06_A 235 ------SLP--VLPSELKELMVSGNRLTS--LPM---LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTL 301 (622)
T ss_dssp ------CCC--CCCTTCCEEECCSSCCSC--CCC---CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCCCCHHHH
T ss_pred ------cCC--CCCCcCcEEECCCCCCCc--CCc---ccccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCCCCCcCH
Confidence 122 355789999999999543 666 6789999999999999999999999999999999999665433
No 61
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.91 E-value=3.6e-23 Score=225.94 Aligned_cols=242 Identities=20% Similarity=0.195 Sum_probs=198.5
Q ss_pred CceEEEcCCCCcccccccccccccCceeccCCCcCccCCCC-CCCCCCCCEEecccccccccccccccCccccccccccc
Q 003802 401 KLFKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLIRTPD-FTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKD 479 (794)
Q Consensus 401 ~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 479 (794)
....++.+++.++.+|..+. ++++.|+|++|.+....+. |.++++|++|+|++|.+....+..|.++++|++|++++
T Consensus 44 ~~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 44 QFSKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp TSCEEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred CCCEEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 46789999999999998765 6899999999998887765 99999999999999998877778899999999999999
Q ss_pred cccccccccccCCCCCccEEEecCCCCCCCCCccccCCCCCcEEEccC-ccCcccCc-ccccCCCCCEEEcCCCCCCCCc
Q 003802 480 CRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGG-TAIRQIPP-SIVQLVNLKIFSLHGCKGQPPK 557 (794)
Q Consensus 480 n~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~-~~l~~l~~-~l~~l~~L~~L~l~~~~~~~~~ 557 (794)
|.+....+..+..+++|++|++++|.+....+..|.++++|++|++++ +.+..++. .+.++++|++|++++|..
T Consensus 122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l---- 197 (440)
T 3zyj_A 122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNL---- 197 (440)
T ss_dssp SCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCC----
T ss_pred CcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcC----
Confidence 987766666789999999999999998877777899999999999998 45666665 578899999999999872
Q ss_pred cccccchhccccCCCCCCCccccCCCCCCCCCCCEEecCCCCCccCCCCccccCCCCCCeEeCCCCCCccC-chhhhccC
Q 003802 558 ILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSL-PSSINQLL 636 (794)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l-p~~l~~l~ 636 (794)
..++.+..+++|+.|+|++|. +++..|..+.++++|+.|+|++|+++.+ +..+..++
T Consensus 198 ---------------------~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 255 (440)
T 3zyj_A 198 ---------------------REIPNLTPLIKLDELDLSGNH-LSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQ 255 (440)
T ss_dssp ---------------------SSCCCCTTCSSCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCT
T ss_pred ---------------------ccccccCCCcccCEEECCCCc-cCccChhhhccCccCCEEECCCCceeEEChhhhcCCC
Confidence 233457788899999999998 6666788899999999999999999965 45678899
Q ss_pred CCCEEecCCCcCCCCCCCCCcccccccccccccccccccccc
Q 003802 637 KLKILCLEKCRNLKSLPELPPEIVFVGAEDCTSLETISAFAK 678 (794)
Q Consensus 637 ~L~~L~L~~n~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~n 678 (794)
+|+.|+|++|++....+. .+.++++|+.|++.+|
T Consensus 256 ~L~~L~L~~N~l~~~~~~--------~~~~l~~L~~L~L~~N 289 (440)
T 3zyj_A 256 SLVEINLAHNNLTLLPHD--------LFTPLHHLERIHLHHN 289 (440)
T ss_dssp TCCEEECTTSCCCCCCTT--------TTSSCTTCCEEECCSS
T ss_pred CCCEEECCCCCCCccChh--------HhccccCCCEEEcCCC
Confidence 999999999975432221 1344566666666555
No 62
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.90 E-value=6.1e-23 Score=210.26 Aligned_cols=221 Identities=22% Similarity=0.175 Sum_probs=143.0
Q ss_pred eEEEcCCCCcccccccccccccCceeccCCCcCccCCCC-CCCCCCCCEEecccccccccccccccCccccccccccccc
Q 003802 403 FKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLIRTPD-FTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCR 481 (794)
Q Consensus 403 ~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~ 481 (794)
++++.+++.++.+|..+ .++|++|++++|.+...++. |..+++|++|++++|.+.+..|..+..+++|++|++++|.
T Consensus 14 ~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 91 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91 (285)
T ss_dssp CEEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred eEEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC
Confidence 44555555555555433 34566666666655555543 5666666666666665555555566666666666666665
Q ss_pred -cccccccccCCCCCccEEEecCCCCCCCCCccccCCCCCcEEEccCccCcccCcc-cccCCCCCEEEcCCCCCCCCccc
Q 003802 482 -NLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPPS-IVQLVNLKIFSLHGCKGQPPKIL 559 (794)
Q Consensus 482 -~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~-l~~l~~L~~L~l~~~~~~~~~~~ 559 (794)
+....|..+..+++|++|++++|.+.+..+..+.++++|++|++++|.++.++.. +..+++|++|++++|...
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~----- 166 (285)
T 1ozn_A 92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS----- 166 (285)
T ss_dssp TCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-----
T ss_pred CccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccc-----
Confidence 3333355666666777777777666665566666677777777777776655543 566677777777666521
Q ss_pred cccchhccccCCCCCCCccccCCCCCCCCCCCEEecCCCCCccCCCCccccCCCCCCeEeCCCCCCccCch-hhhccCCC
Q 003802 560 SSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLPS-SINQLLKL 638 (794)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L 638 (794)
......+..+++|+.|++++|. +++..|..+..+++|+.|++++|.++.+|. .+..+++|
T Consensus 167 ------------------~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 227 (285)
T 1ozn_A 167 ------------------SVPERAFRGLHSLDRLLLHQNR-VAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRAL 227 (285)
T ss_dssp ------------------EECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTC
T ss_pred ------------------ccCHHHhcCccccCEEECCCCc-ccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCccc
Confidence 0011236667788888888887 555567778888888888888888887764 47788888
Q ss_pred CEEecCCCcCC
Q 003802 639 KILCLEKCRNL 649 (794)
Q Consensus 639 ~~L~L~~n~~~ 649 (794)
+.|++++|+..
T Consensus 228 ~~L~l~~N~~~ 238 (285)
T 1ozn_A 228 QYLRLNDNPWV 238 (285)
T ss_dssp CEEECCSSCEE
T ss_pred CEEeccCCCcc
Confidence 88888888754
No 63
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.90 E-value=2.2e-23 Score=213.56 Aligned_cols=221 Identities=21% Similarity=0.212 Sum_probs=187.1
Q ss_pred ceeeeecCCCCCCCCCCCCCCceEEEcCCCCcccccc-cccccccCceeccCCCcCccCCCC-CCCCCCCCEEeccccc-
Q 003802 381 RYLKWHEYPFNSLPVSFRPEKLFKLNLCNSRIKYLWK-GIKPLKELKFMNLSHSCNLIRTPD-FTGVPNLERLNLEGCT- 457 (794)
Q Consensus 381 ~~L~~~~~~~~~l~~~~~~~~L~~L~L~~n~i~~l~~-~~~~l~~L~~L~L~~n~~~~~~~~-~~~l~~L~~L~l~~~~- 457 (794)
+.++..+..+..+|..+ +++|++|++++|.++.++. .+..+++|++|++++|.+....+. |..+++|++|++++|.
T Consensus 14 ~~~~c~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 92 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI-PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92 (285)
T ss_dssp CEEECCSSCCSSCCTTC-CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred eEEEcCcCCcccCCcCC-CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCC
Confidence 44555666666777654 4689999999999998875 589999999999999988877665 9999999999999997
Q ss_pred ccccccccccCccccccccccccccccccccccCCCCCccEEEecCCCCCCCCCccccCCCCCcEEEccCccCcccCc-c
Q 003802 458 RLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPP-S 536 (794)
Q Consensus 458 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~-~ 536 (794)
+....|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..+..++.+++|++|++++|.++.+|. .
T Consensus 93 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 172 (285)
T 1ozn_A 93 LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERA 172 (285)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTT
T ss_pred ccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHH
Confidence 555557889999999999999999888778889999999999999999887777779999999999999999998876 4
Q ss_pred cccCCCCCEEEcCCCCCCCCccccccchhccccCCCCCCCccccCCCCCCCCCCCEEecCCCCCccCCCCccccCCCCCC
Q 003802 537 IVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLE 616 (794)
Q Consensus 537 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~ 616 (794)
+..+++|+.|++++|... ......+..+++|+.|++++|. +++..+..+..+++|+
T Consensus 173 ~~~l~~L~~L~l~~n~l~-----------------------~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~ 228 (285)
T 1ozn_A 173 FRGLHSLDRLLLHQNRVA-----------------------HVHPHAFRDLGRLMTLYLFANN-LSALPTEALAPLRALQ 228 (285)
T ss_dssp TTTCTTCCEEECCSSCCC-----------------------EECTTTTTTCTTCCEEECCSSC-CSCCCHHHHTTCTTCC
T ss_pred hcCccccCEEECCCCccc-----------------------ccCHhHccCcccccEeeCCCCc-CCcCCHHHcccCcccC
Confidence 888999999999998732 1112347788999999999999 5555556789999999
Q ss_pred eEeCCCCCCc
Q 003802 617 AIDLSGNNFF 626 (794)
Q Consensus 617 ~L~L~~n~l~ 626 (794)
.|++++|.+.
T Consensus 229 ~L~l~~N~~~ 238 (285)
T 1ozn_A 229 YLRLNDNPWV 238 (285)
T ss_dssp EEECCSSCEE
T ss_pred EEeccCCCcc
Confidence 9999999887
No 64
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.90 E-value=6.2e-24 Score=224.91 Aligned_cols=263 Identities=21% Similarity=0.206 Sum_probs=206.3
Q ss_pred eeeeecCCCCCCCCCCCCCCceEEEcCCCCcccccc-cccccccCceeccCCCcCccCCCC-CCCCCCCCEEeccccccc
Q 003802 382 YLKWHEYPFNSLPVSFRPEKLFKLNLCNSRIKYLWK-GIKPLKELKFMNLSHSCNLIRTPD-FTGVPNLERLNLEGCTRL 459 (794)
Q Consensus 382 ~L~~~~~~~~~l~~~~~~~~L~~L~L~~n~i~~l~~-~~~~l~~L~~L~L~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~ 459 (794)
..+..++.+..+|..+. ++|++|++++|.++.++. .+.++++|++|++++|.+....+. |.++++|++|++++|.+.
T Consensus 35 ~c~~~~~~l~~iP~~~~-~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 113 (353)
T 2z80_A 35 ICKGSSGSLNSIPSGLT-EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 113 (353)
T ss_dssp EEECCSTTCSSCCTTCC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred EeeCCCCCccccccccc-ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCC
Confidence 35667778888887664 589999999999999987 699999999999999998887766 999999999999999877
Q ss_pred ccccccccCcccccccccccccccccccc--ccCCCCCccEEEecCCC-CCCCCCccccCCCCCcEEEccCccCccc-Cc
Q 003802 460 LEVHQSVGTLKRLILLNLKDCRNLVSFPK--NVCLMKSLKILCLCGCL-KLEKLPQDLGEVECLEELDVGGTAIRQI-PP 535 (794)
Q Consensus 460 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~--~~~~l~~L~~L~L~~~~-~~~~~~~~~~~l~~L~~L~l~~~~l~~l-~~ 535 (794)
+..+..+.++++|++|++++|.+. .+|. .+..+++|++|++++|. +....+..+.++++|++|++++|.++.+ |.
T Consensus 114 ~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 192 (353)
T 2z80_A 114 NLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPK 192 (353)
T ss_dssp SCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTT
T ss_pred cCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHH
Confidence 655556899999999999999866 4554 78899999999999995 4444567799999999999999999865 77
Q ss_pred ccccCCCCCEEEcCCCCCCCCccccccchhccccCCCCCCCccccCCCCCCCCCCCEEecCCCCCccCCCCccc---cCC
Q 003802 536 SIVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDI---GSL 612 (794)
Q Consensus 536 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~---~~l 612 (794)
.+..+++|++|++++|..... ....+..+++|+.|++++|. +++..+..+ ...
T Consensus 193 ~l~~l~~L~~L~l~~n~l~~~-----------------------~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~~~~ 248 (353)
T 2z80_A 193 SLKSIQNVSHLILHMKQHILL-----------------------LEIFVDVTSSVECLELRDTD-LDTFHFSELSTGETN 248 (353)
T ss_dssp TTTTCSEEEEEEEECSCSTTH-----------------------HHHHHHHTTTEEEEEEESCB-CTTCCCC------CC
T ss_pred HHhccccCCeecCCCCccccc-----------------------hhhhhhhcccccEEECCCCc-ccccccccccccccc
Confidence 889999999999999872110 00013346899999999998 443333332 346
Q ss_pred CCCCeEeCCCCCCc-----cCchhhhccCCCCEEecCCCcCCCCCCCCCcccccccccccccccccccccc
Q 003802 613 FSLEAIDLSGNNFF-----SLPSSINQLLKLKILCLEKCRNLKSLPELPPEIVFVGAEDCTSLETISAFAK 678 (794)
Q Consensus 613 ~~L~~L~L~~n~l~-----~lp~~l~~l~~L~~L~L~~n~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~n 678 (794)
..++.++++++.++ .+|..+..+++|+.|+|++|++. .+|. .+ +.++++|+.|++.+|
T Consensus 249 ~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~---~~----~~~l~~L~~L~L~~N 311 (353)
T 2z80_A 249 SLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPD---GI----FDRLTSLQKIWLHTN 311 (353)
T ss_dssp CCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCT---TT----TTTCTTCCEEECCSS
T ss_pred chhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCH---HH----HhcCCCCCEEEeeCC
Confidence 77888888888776 47888999999999999999754 3432 11 355667777766665
No 65
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.90 E-value=2.7e-22 Score=224.84 Aligned_cols=173 Identities=17% Similarity=0.095 Sum_probs=95.5
Q ss_pred CCCcEEEEcCcccCCCccccccCcceeeeecCCCCCCCCCCCCCCceEEEcCCCCcccccccccccccCceeccCCCcCc
Q 003802 357 SNLRLLEINNLYSSGNLEYLSNNLRYLKWHEYPFNSLPVSFRPEKLFKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNL 436 (794)
Q Consensus 357 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~~~~~~~~l~~~~~~~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~n~~~ 436 (794)
.++++|++++|.++......+.+++.|++.+|.+..+|. .+++|++|+|++|.++.+|. .+++|++|++++|.+.
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~ 114 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPLT 114 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCCTTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCCCC
T ss_pred CCCcEEEecCCCcCccChhhCCCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCcCC
Confidence 457888888887764444444566666666666666665 34566666666666666655 4566666666666554
Q ss_pred cCCCCCCCCCCCCEEecccccccccccccccCccccccccccccccccccccccCCCCCccEEEecCCCCCCCCCccccC
Q 003802 437 IRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGE 516 (794)
Q Consensus 437 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~ 516 (794)
..+. .+++|+.|++++|.+.. +|.. +++|++|++++|.+. .+|. .+++|+.|++++|.+.+ +| ..
T Consensus 115 ~l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~-~l~~---~~~~L~~L~L~~N~l~~-l~---~~ 179 (622)
T 3g06_A 115 HLPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLA-SLPA---LPSELCKLWAYNNQLTS-LP---ML 179 (622)
T ss_dssp CCCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSC-CC---CC
T ss_pred CCCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCC-CcCC---ccCCCCEEECCCCCCCC-Cc---cc
Confidence 4333 34556666666655332 3332 255556666655433 2332 23455555555555443 33 23
Q ss_pred CCCCcEEEccCccCcccCcccccCCCCCEEEcCCCC
Q 003802 517 VECLEELDVGGTAIRQIPPSIVQLVNLKIFSLHGCK 552 (794)
Q Consensus 517 l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~ 552 (794)
+++|+.|++++|.++.+|.. +++|+.|++++|.
T Consensus 180 ~~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~ 212 (622)
T 3g06_A 180 PSGLQELSVSDNQLASLPTL---PSELYKLWAYNNR 212 (622)
T ss_dssp CTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSC
T ss_pred CCCCcEEECCCCCCCCCCCc---cchhhEEECcCCc
Confidence 45555555555555555432 2455555555544
No 66
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.90 E-value=1.2e-24 Score=226.23 Aligned_cols=212 Identities=16% Similarity=0.080 Sum_probs=113.0
Q ss_pred ceEEEcCCCCccccc-ccccccccCceeccCCCcCccCCCCCCCCCCCCEEecccccccccccccccCcccccccccccc
Q 003802 402 LFKLNLCNSRIKYLW-KGIKPLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDC 480 (794)
Q Consensus 402 L~~L~L~~n~i~~l~-~~~~~l~~L~~L~L~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n 480 (794)
|++|++++|.++.++ ..+..+++|++|++++|.+....+ +..+++|++|++++|.+.+. ...++|++|++++|
T Consensus 36 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l-----~~~~~L~~L~l~~n 109 (317)
T 3o53_A 36 VKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQEL-----LVGPSIETLHAANN 109 (317)
T ss_dssp CSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEE-----EECTTCCEEECCSS
T ss_pred CCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCccccc-----cCCCCcCEEECCCC
Confidence 333444444444332 234444445555555444433322 44455555555555443321 12255555555555
Q ss_pred ccccccccccCCCCCccEEEecCCCCCCCCCccccCCCCCcEEEccCccCcccC-ccc-ccCCCCCEEEcCCCCCCCCcc
Q 003802 481 RNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIP-PSI-VQLVNLKIFSLHGCKGQPPKI 558 (794)
Q Consensus 481 ~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~-~~l-~~l~~L~~L~l~~~~~~~~~~ 558 (794)
.+.+..+. .+++|++|++++|.+.+..+..++.+++|++|++++|.++.++ ..+ ..+++|++|++++|...
T Consensus 110 ~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~---- 182 (317)
T 3o53_A 110 NISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY---- 182 (317)
T ss_dssp CCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC----
T ss_pred ccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCc----
Confidence 54433322 2455666666666655555555566666666666666665432 223 34566666666665511
Q ss_pred ccccchhccccCCCCCCCccccCCCCCCCCCCCEEecCCCCCccCCCCccccCCCCCCeEeCCCCCCccCchhhhccCCC
Q 003802 559 LSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLPSSINQLLKL 638 (794)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L 638 (794)
.++....+++|++|++++|.+.. +|..+..+++|+.|+|++|.++.+|..+..+++|
T Consensus 183 ---------------------~~~~~~~l~~L~~L~Ls~N~l~~--l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L 239 (317)
T 3o53_A 183 ---------------------DVKGQVVFAKLKTLDLSSNKLAF--MGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNL 239 (317)
T ss_dssp ---------------------EEECCCCCTTCCEEECCSSCCCE--ECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTC
T ss_pred ---------------------ccccccccccCCEEECCCCcCCc--chhhhcccCcccEEECcCCcccchhhHhhcCCCC
Confidence 11222335667777777776432 4445666777777777777777777666667777
Q ss_pred CEEecCCCcCC
Q 003802 639 KILCLEKCRNL 649 (794)
Q Consensus 639 ~~L~L~~n~~~ 649 (794)
+.|++++|+..
T Consensus 240 ~~L~l~~N~~~ 250 (317)
T 3o53_A 240 EHFDLRGNGFH 250 (317)
T ss_dssp CEEECTTCCCB
T ss_pred CEEEccCCCcc
Confidence 77777777654
No 67
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.89 E-value=7.7e-24 Score=220.17 Aligned_cols=259 Identities=12% Similarity=0.063 Sum_probs=203.1
Q ss_pred CceEEEcCCCCccccccc-ccccccCceeccCCCcCccCCCC-CCCCCCCCEEecccccccccccccccCcccccccccc
Q 003802 401 KLFKLNLCNSRIKYLWKG-IKPLKELKFMNLSHSCNLIRTPD-FTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLK 478 (794)
Q Consensus 401 ~L~~L~L~~n~i~~l~~~-~~~l~~L~~L~L~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 478 (794)
+++..+++.+.+...+.. +..+++|++|++++|.+....+. |..+++|++|++++|.+.+..+ +..+++|++|+++
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls 88 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN 88 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence 456677778888766554 56788999999999988877765 8999999999999998876554 8999999999999
Q ss_pred ccccccccccccCCCCCccEEEecCCCCCCCCCccccCCCCCcEEEccCccCcccCc-ccccCCCCCEEEcCCCCCCCCc
Q 003802 479 DCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPP-SIVQLVNLKIFSLHGCKGQPPK 557 (794)
Q Consensus 479 ~n~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~-~l~~l~~L~~L~l~~~~~~~~~ 557 (794)
+|.+.+ ++ ..++|++|++++|.+.+..+. .+++|++|++++|.++.++. .+..+++|++|++++|.....
T Consensus 89 ~n~l~~-l~----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~- 159 (317)
T 3o53_A 89 NNYVQE-LL----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV- 159 (317)
T ss_dssp SSEEEE-EE----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEE-
T ss_pred CCcccc-cc----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcc-
Confidence 988653 33 348999999999988775543 46789999999999997754 778899999999999873211
Q ss_pred cccccchhccccCCCCCCCccccCCCC-CCCCCCCEEecCCCCCccCCCCccccCCCCCCeEeCCCCCCccCchhhhccC
Q 003802 558 ILSSNFFLSLLLPNKNSDSMCLSFPRF-TGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLPSSINQLL 636 (794)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~ 636 (794)
....+ ..+++|++|++++|.+.. ++. ...+++|++|+|++|+++.+|..+..++
T Consensus 160 ----------------------~~~~~~~~l~~L~~L~L~~N~l~~--~~~-~~~l~~L~~L~Ls~N~l~~l~~~~~~l~ 214 (317)
T 3o53_A 160 ----------------------NFAELAASSDTLEHLNLQYNFIYD--VKG-QVVFAKLKTLDLSSNKLAFMGPEFQSAA 214 (317)
T ss_dssp ----------------------EGGGGGGGTTTCCEEECTTSCCCE--EEC-CCCCTTCCEEECCSSCCCEECGGGGGGT
T ss_pred ----------------------cHHHHhhccCcCCEEECCCCcCcc--ccc-ccccccCCEEECCCCcCCcchhhhcccC
Confidence 11122 357899999999999533 333 3458999999999999999988899999
Q ss_pred CCCEEecCCCcCCCCCCCCCccccccccccccccccccccccccCCCCceEEEeCCCCchhhhhhhhh
Q 003802 637 KLKILCLEKCRNLKSLPELPPEIVFVGAEDCTSLETISAFAKLSRSPNIALNFLNCFKLVEDQVSKDN 704 (794)
Q Consensus 637 ~L~~L~L~~n~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~n~~~~~~~~~~~~~~~~L~~L~l~~N~ 704 (794)
+|++|+|++|++. .+|. .+..+++|+.+++.+|.......+..+..+++|+.+++++|.
T Consensus 215 ~L~~L~L~~N~l~-~l~~--------~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~ 273 (317)
T 3o53_A 215 GVTWISLRNNKLV-LIEK--------ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK 273 (317)
T ss_dssp TCSEEECTTSCCC-EECT--------TCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred cccEEECcCCccc-chhh--------HhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCch
Confidence 9999999999854 3443 246678899999888833324455677889999999998553
No 68
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.89 E-value=4.8e-24 Score=221.18 Aligned_cols=241 Identities=21% Similarity=0.179 Sum_probs=179.6
Q ss_pred CcceeeeecCCCCCCCCCCCCCCceEEEcCCCCccc--cccccc-------ccccCceeccCCCcCccCCCC-C--CCCC
Q 003802 379 NLRYLKWHEYPFNSLPVSFRPEKLFKLNLCNSRIKY--LWKGIK-------PLKELKFMNLSHSCNLIRTPD-F--TGVP 446 (794)
Q Consensus 379 ~l~~L~~~~~~~~~l~~~~~~~~L~~L~L~~n~i~~--l~~~~~-------~l~~L~~L~L~~n~~~~~~~~-~--~~l~ 446 (794)
+++.|.+.++.+ .+|..+. ..|++|++++|.++. +|..+. ++++|++|++++|.+....|. + ..++
T Consensus 44 ~L~~l~l~~n~l-~~p~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~ 121 (312)
T 1wwl_A 44 SLEYLLKRVDTE-ADLGQFT-DIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGP 121 (312)
T ss_dssp ECTTHHHHCCTT-CCCHHHH-HHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSC
T ss_pred CceeEeeccccc-ccHHHHH-HHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCC
Confidence 344444444444 3343221 127777888888753 454444 688999999999988866555 4 8899
Q ss_pred CCCEEecccccccccccccccCc-----cccccccccccccccccccccCCCCCccEEEecCCCCCCC--CCccc--cCC
Q 003802 447 NLERLNLEGCTRLLEVHQSVGTL-----KRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEK--LPQDL--GEV 517 (794)
Q Consensus 447 ~L~~L~l~~~~~~~~~~~~~~~l-----~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~~~~~~~--~~~~~--~~l 517 (794)
+|++|++++|.+.+. |..+..+ ++|++|++++|.+.+..|..++.+++|++|++++|.+.+. .+..+ +.+
T Consensus 122 ~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l 200 (312)
T 1wwl_A 122 DLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKF 200 (312)
T ss_dssp CCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSC
T ss_pred CccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccC
Confidence 999999999887766 7777777 8999999999988777778899999999999999887664 23334 788
Q ss_pred CCCcEEEccCccCcccC---c-ccccCCCCCEEEcCCCCCCCCccccccchhccccCCCCCCCccccCCCCCCCCCCCEE
Q 003802 518 ECLEELDVGGTAIRQIP---P-SIVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTL 593 (794)
Q Consensus 518 ~~L~~L~l~~~~l~~l~---~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L 593 (794)
++|++|++++|.++.++ . .+..+++|++|++++|..... ...+.+..+++|+.|
T Consensus 201 ~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~----------------------~~~~~~~~l~~L~~L 258 (312)
T 1wwl_A 201 PTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDA----------------------AGAPSCDWPSQLNSL 258 (312)
T ss_dssp TTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSS----------------------CCCSCCCCCTTCCEE
T ss_pred CCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcc----------------------cchhhhhhcCCCCEE
Confidence 99999999999988443 2 235678999999998873211 112335567889999
Q ss_pred ecCCCCCccCCCCccccCCCCCCeEeCCCCCCccCchhhhccCCCCEEecCCCcCC
Q 003802 594 DLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLPSSINQLLKLKILCLEKCRNL 649 (794)
Q Consensus 594 ~l~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~~~ 649 (794)
++++|.+. .+|..+. ++|++|+|++|+++.+|. +..+++|++|+|++|++.
T Consensus 259 ~Ls~N~l~--~ip~~~~--~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 259 NLSFTGLK--QVPKGLP--AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp ECTTSCCS--SCCSSCC--SEEEEEECCSSCCCSCCC-TTTSCEEEEEECTTCTTT
T ss_pred ECCCCccC--hhhhhcc--CCceEEECCCCCCCCChh-HhhCCCCCEEeccCCCCC
Confidence 99999854 4777666 889999999999998876 888999999999998754
No 69
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.88 E-value=4.9e-23 Score=226.58 Aligned_cols=215 Identities=15% Similarity=0.070 Sum_probs=180.3
Q ss_pred CCCceEEEcCCCCccccc-ccccccccCceeccCCCcCccCCCCCCCCCCCCEEecccccccccccccccCccccccccc
Q 003802 399 PEKLFKLNLCNSRIKYLW-KGIKPLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNL 477 (794)
Q Consensus 399 ~~~L~~L~L~~n~i~~l~-~~~~~l~~L~~L~L~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 477 (794)
+++|++|+|++|.++.++ ..|..+++|++|+|++|.+...++ +..+++|++|++++|.+.+.. ..++|++|++
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L~L 106 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELL-----VGPSIETLHA 106 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEE-----ECTTCCEEEC
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCC-----CCCCcCEEEC
Confidence 448999999999999875 569999999999999998876655 889999999999999765432 2389999999
Q ss_pred cccccccccccccCCCCCccEEEecCCCCCCCCCccccCCCCCcEEEccCccCcc-cCcccc-cCCCCCEEEcCCCCCCC
Q 003802 478 KDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQ-IPPSIV-QLVNLKIFSLHGCKGQP 555 (794)
Q Consensus 478 ~~n~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-l~~~l~-~l~~L~~L~l~~~~~~~ 555 (794)
++|.+.+..+. .+++|++|++++|.+.+..|..++.+++|+.|++++|.++. .|..+. .+++|+.|++++|...
T Consensus 107 ~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~- 182 (487)
T 3oja_A 107 ANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY- 182 (487)
T ss_dssp CSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC-
T ss_pred cCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc-
Confidence 99987765554 46889999999999999888889999999999999999985 455665 7899999999998722
Q ss_pred CccccccchhccccCCCCCCCccccCCCCCCCCCCCEEecCCCCCccCCCCccccCCCCCCeEeCCCCCCccCchhhhcc
Q 003802 556 PKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLPSSINQL 635 (794)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l 635 (794)
..+....+++|+.|+|++|.+.. +|..+..+++|+.|+|++|.++.+|..+..+
T Consensus 183 ------------------------~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l 236 (487)
T 3oja_A 183 ------------------------DVKGQVVFAKLKTLDLSSNKLAF--MGPEFQSAAGVTWISLRNNKLVLIEKALRFS 236 (487)
T ss_dssp ------------------------EEECCCCCTTCCEEECCSSCCCE--ECGGGGGGTTCSEEECTTSCCCEECTTCCCC
T ss_pred ------------------------cccccccCCCCCEEECCCCCCCC--CCHhHcCCCCccEEEecCCcCcccchhhccC
Confidence 11334468899999999999543 6666889999999999999999999889999
Q ss_pred CCCCEEecCCCcCC
Q 003802 636 LKLKILCLEKCRNL 649 (794)
Q Consensus 636 ~~L~~L~L~~n~~~ 649 (794)
++|+.|++++|+..
T Consensus 237 ~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 237 QNLEHFDLRGNGFH 250 (487)
T ss_dssp TTCCEEECTTCCBC
T ss_pred CCCCEEEcCCCCCc
Confidence 99999999999865
No 70
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.88 E-value=1.1e-24 Score=240.15 Aligned_cols=360 Identities=15% Similarity=0.073 Sum_probs=241.1
Q ss_pred CeEEEEEecCCcccccc----hhhhccCCCCcEEEEcCcccCCCcc----cccc----CcceeeeecCCCCC-----CCC
Q 003802 333 DAVEAIIVDVPEMTELE----AKSFSTMSNLRLLEINNLYSSGNLE----YLSN----NLRYLKWHEYPFNS-----LPV 395 (794)
Q Consensus 333 ~~~~~l~l~~~~~~~~~----~~~~~~~~~L~~L~l~~n~~~~~~~----~~~~----~l~~L~~~~~~~~~-----l~~ 395 (794)
+.++.+.++.+.+.... ...+..+++|++|++++|.+.+..+ ..+. +++.|++.+|.+.. ++.
T Consensus 28 ~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~ 107 (461)
T 1z7x_W 28 QQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSS 107 (461)
T ss_dssp TTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred CCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHH
Confidence 46778899988766432 4567788999999999998865332 2223 58888888887663 233
Q ss_pred CC-CCCCceEEEcCCCCcccc-cc----c-ccccccCceeccCCCcCccCC----CC-CCCCCCCCEEeccccccccccc
Q 003802 396 SF-RPEKLFKLNLCNSRIKYL-WK----G-IKPLKELKFMNLSHSCNLIRT----PD-FTGVPNLERLNLEGCTRLLEVH 463 (794)
Q Consensus 396 ~~-~~~~L~~L~L~~n~i~~l-~~----~-~~~l~~L~~L~L~~n~~~~~~----~~-~~~l~~L~~L~l~~~~~~~~~~ 463 (794)
.+ .+++|++|++++|.++.. +. . ....++|++|++++|.+.... +. +..+++|++|++++|.+....+
T Consensus 108 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~ 187 (461)
T 1z7x_W 108 TLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGV 187 (461)
T ss_dssp HTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHH
T ss_pred HHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHH
Confidence 33 677999999999998743 22 2 233668999999999876543 22 5668999999999998765544
Q ss_pred cccc-----Cccccccccccccccccc----cccccCCCCCccEEEecCCCCCCCC-----CccccCCCCCcEEEccCcc
Q 003802 464 QSVG-----TLKRLILLNLKDCRNLVS----FPKNVCLMKSLKILCLCGCLKLEKL-----PQDLGEVECLEELDVGGTA 529 (794)
Q Consensus 464 ~~~~-----~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~L~~~~~~~~~-----~~~~~~l~~L~~L~l~~~~ 529 (794)
..+. .+++|++|++++|.+... ++..+..+++|++|++++|.+.... +..+..+++|++|++++|.
T Consensus 188 ~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~ 267 (461)
T 1z7x_W 188 RVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECG 267 (461)
T ss_dssp HHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred HHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCC
Confidence 4443 356999999999987653 5777888999999999999765432 2223468999999999999
Q ss_pred Ccc-----cCcccccCCCCCEEEcCCCCCCCCccccccchhccccCCCCCCCccccCCCCCCCCCCCEEecCCCCCccC-
Q 003802 530 IRQ-----IPPSIVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEG- 603 (794)
Q Consensus 530 l~~-----l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~- 603 (794)
++. ++..+..+++|++|++++|......... ... ......++|++|++++|.+...
T Consensus 268 l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~---l~~---------------~l~~~~~~L~~L~L~~n~l~~~~ 329 (461)
T 1z7x_W 268 ITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARL---LCE---------------TLLEPGCQLESLWVKSCSFTAAC 329 (461)
T ss_dssp CCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHH---HHH---------------HHTSTTCCCCEEECTTSCCBGGG
T ss_pred CCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHH---HHH---------------HhccCCccceeeEcCCCCCchHH
Confidence 985 7778888999999999998721100000 000 0012346899999999984321
Q ss_pred --CCCccccCCCCCCeEeCCCCCCccC-chhhhc-----cCCCCEEecCCCcCCC----CCCCCCccccccccccccccc
Q 003802 604 --AIPSDIGSLFSLEAIDLSGNNFFSL-PSSINQ-----LLKLKILCLEKCRNLK----SLPELPPEIVFVGAEDCTSLE 671 (794)
Q Consensus 604 --~~~~~~~~l~~L~~L~L~~n~l~~l-p~~l~~-----l~~L~~L~L~~n~~~~----~~~~~~~~L~~L~l~~~~~L~ 671 (794)
.++..+..+++|++|+|++|.++.. +..+.. .++|++|+|++|++.. .+|. .+..|++|+
T Consensus 330 ~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~--------~l~~~~~L~ 401 (461)
T 1z7x_W 330 CSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAA--------TLLANHSLR 401 (461)
T ss_dssp HHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH--------HHHHCCCCC
T ss_pred HHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHH--------HHHhCCCcc
Confidence 1456677889999999999988743 333332 6799999999997542 2222 234567777
Q ss_pred cccccccccCCCCc--------eEEEeCCCCchhhhhhhhhHHHHHHHHHHhhhcc
Q 003802 672 TISAFAKLSRSPNI--------ALNFLNCFKLVEDQVSKDNLAVTLMKQWLLSYHS 719 (794)
Q Consensus 672 ~l~~~~n~~~~~~~--------~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~~~~~ 719 (794)
.|++++| .+.... +.....+..|..++++.|.........+....+.
T Consensus 402 ~L~l~~N-~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~~~~~l~~l~~~~p~ 456 (461)
T 1z7x_W 402 ELDLSNN-CLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPS 456 (461)
T ss_dssp EEECCSS-SCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHHHHHHHHHCTT
T ss_pred EEECCCC-CCCHHHHHHHHHHhccCCcchhheeecccccCHHHHHHHHHHhccCCC
Confidence 7777766 222110 0111234445555555555554444444444443
No 71
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.87 E-value=2.2e-22 Score=221.46 Aligned_cols=234 Identities=17% Similarity=0.096 Sum_probs=168.8
Q ss_pred CCCcEEEEcCcccCCCccccccCcceeeeecCCCCCCCCCCCCCCceEEEcCCCCcccccccccccccCceeccCCCcCc
Q 003802 357 SNLRLLEINNLYSSGNLEYLSNNLRYLKWHEYPFNSLPVSFRPEKLFKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNL 436 (794)
Q Consensus 357 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~~~~~~~~l~~~~~~~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~n~~~ 436 (794)
++|++|++++|.+.+..+..+.+ +++|++|+|++|.++..+. +..+++|++|+|++|.+.
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~-------------------l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~ 93 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAP-------------------FTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQ 93 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTT-------------------CTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEE
T ss_pred CCccEEEeeCCcCCCCCHHHHhC-------------------CCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCC
Confidence 36777777777666655544433 3377777777777776554 777788888888877665
Q ss_pred cCCCCCCCCCCCCEEecccccccccccccccCccccccccccccccccccccccCCCCCccEEEecCCCCCCCCCcccc-
Q 003802 437 IRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLG- 515 (794)
Q Consensus 437 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~- 515 (794)
..++ .++|++|++++|.+.+..+. .+++|++|++++|.+.+..|..++.+++|++|++++|.+.+..|..+.
T Consensus 94 ~l~~----~~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~ 166 (487)
T 3oja_A 94 ELLV----GPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAA 166 (487)
T ss_dssp EEEE----CTTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGG
T ss_pred CCCC----CCCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhh
Confidence 4433 36788888888776655443 356788888888877777777777788888888888887776666665
Q ss_pred CCCCCcEEEccCccCcccCcccccCCCCCEEEcCCCCCCCCccccccchhccccCCCCCCCccccCCCCCCCCCCCEEec
Q 003802 516 EVECLEELDVGGTAIRQIPPSIVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDL 595 (794)
Q Consensus 516 ~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l 595 (794)
.+++|+.|++++|.++.+|. ...+++|+.|++++|.... ..+.+..+++|+.|++
T Consensus 167 ~l~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~Ls~N~l~~------------------------~~~~~~~l~~L~~L~L 221 (487)
T 3oja_A 167 SSDTLEHLNLQYNFIYDVKG-QVVFAKLKTLDLSSNKLAF------------------------MGPEFQSAAGVTWISL 221 (487)
T ss_dssp GTTTCCEEECTTSCCCEEEC-CCCCTTCCEEECCSSCCCE------------------------ECGGGGGGTTCSEEEC
T ss_pred hCCcccEEecCCCccccccc-cccCCCCCEEECCCCCCCC------------------------CCHhHcCCCCccEEEe
Confidence 67888888888888876654 3357888888888876211 0122556778888888
Q ss_pred CCCCCccCCCCccccCCCCCCeEeCCCCCCc--cCchhhhccCCCCEEecC
Q 003802 596 SDCNLLEGAIPSDIGSLFSLEAIDLSGNNFF--SLPSSINQLLKLKILCLE 644 (794)
Q Consensus 596 ~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~--~lp~~l~~l~~L~~L~L~ 644 (794)
++|.+.. +|..+..+++|+.|++++|.+. .+|.++..++.|+.|+++
T Consensus 222 s~N~l~~--lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 222 RNNKLVL--IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp TTSCCCE--ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCcCcc--cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 8888543 7777888899999999999888 777778888888888876
No 72
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.87 E-value=2.2e-21 Score=197.63 Aligned_cols=219 Identities=21% Similarity=0.187 Sum_probs=120.1
Q ss_pred eeecCCCCCCCCCCCCCCceEEEcCCCCcccccc-cccccccCceeccCCCcCccCCCC-CCCCCCCCEEeccccccccc
Q 003802 384 KWHEYPFNSLPVSFRPEKLFKLNLCNSRIKYLWK-GIKPLKELKFMNLSHSCNLIRTPD-FTGVPNLERLNLEGCTRLLE 461 (794)
Q Consensus 384 ~~~~~~~~~l~~~~~~~~L~~L~L~~n~i~~l~~-~~~~l~~L~~L~L~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~ 461 (794)
+..+..+..+|..++ .+|++|++++|.++.++. .+.++++|++|++++|.+....+. |..+++|++|++++|.+.+.
T Consensus 13 ~c~~~~l~~ip~~l~-~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 91 (276)
T 2z62_A 13 QCMELNFYKIPDNLP-FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL 91 (276)
T ss_dssp ECTTSCCSSCCSSSC-TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEE
T ss_pred EecCCCccccCCCCC-CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCcc
Confidence 334444555555442 456666666666665554 456666666666666655544443 55555566666655555444
Q ss_pred ccccccCccccccccccccccccccccccCCCCCccEEEecCCCCCCC-CCccccCCCCCcEEEccCccCcccCc-cccc
Q 003802 462 VHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEK-LPQDLGEVECLEELDVGGTAIRQIPP-SIVQ 539 (794)
Q Consensus 462 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~~~~~~~-~~~~~~~l~~L~~L~l~~~~l~~l~~-~l~~ 539 (794)
.+..+.++++|++|++++|.+.+..+..+..+++|++|++++|.+.+. +|..+.++++|++|++++|.++.++. .+..
T Consensus 92 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 171 (276)
T 2z62_A 92 ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV 171 (276)
T ss_dssp CTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHH
T ss_pred ChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhh
Confidence 444555555555555555544443333444555555555555444432 34444455555555555554443321 2222
Q ss_pred CCCCCEEEcCCCCCCCCccccccchhccccCCCCCCCccccCCCCCCCCCCC-EEecCCCCCccCCCCccccCCCCCCeE
Q 003802 540 LVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQ-TLDLSDCNLLEGAIPSDIGSLFSLEAI 618 (794)
Q Consensus 540 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~-~L~l~~n~~~~~~~~~~~~~l~~L~~L 618 (794)
++ .++.|. .|++++|.+ ++ ++.......+|++|
T Consensus 172 l~--------------------------------------------~L~~l~l~L~ls~n~l-~~-~~~~~~~~~~L~~L 205 (276)
T 2z62_A 172 LH--------------------------------------------QMPLLNLSLDLSLNPM-NF-IQPGAFKEIRLKEL 205 (276)
T ss_dssp HH--------------------------------------------TCTTCCEEEECCSSCC-CE-ECTTSSCSCCEEEE
T ss_pred hh--------------------------------------------hccccceeeecCCCcc-cc-cCccccCCCcccEE
Confidence 21 222233 677777774 32 33333344578888
Q ss_pred eCCCCCCccCchh-hhccCCCCEEecCCCcCC
Q 003802 619 DLSGNNFFSLPSS-INQLLKLKILCLEKCRNL 649 (794)
Q Consensus 619 ~L~~n~l~~lp~~-l~~l~~L~~L~L~~n~~~ 649 (794)
++++|.++.+|.. +..+++|+.|+|++|+..
T Consensus 206 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 206 ALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp ECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred ECCCCceeecCHhHhcccccccEEEccCCccc
Confidence 8888888877654 477888888888888743
No 73
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.87 E-value=6.4e-23 Score=212.72 Aligned_cols=220 Identities=20% Similarity=0.197 Sum_probs=116.8
Q ss_pred CceEEEcCCCCcccccccccccccCceeccCCCcCcc-CCCC-CC-------CCCCCCEEecccccccccccccc--cCc
Q 003802 401 KLFKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLI-RTPD-FT-------GVPNLERLNLEGCTRLLEVHQSV--GTL 469 (794)
Q Consensus 401 ~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~n~~~~-~~~~-~~-------~l~~L~~L~l~~~~~~~~~~~~~--~~l 469 (794)
+|++|++++|.+ .+|..+... |++|++++|.+.. ..+. +. ++++|++|++++|.+.+..|..+ ..+
T Consensus 44 ~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l 120 (312)
T 1wwl_A 44 SLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATG 120 (312)
T ss_dssp ECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCS
T ss_pred CceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcC
Confidence 556666666666 555554433 6666666665532 2222 22 45666666666666655555554 566
Q ss_pred cccccccccccccccccccccCCC-----CCccEEEecCCCCCCCCCccccCCCCCcEEEccCccCcc---cCccc--cc
Q 003802 470 KRLILLNLKDCRNLVSFPKNVCLM-----KSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQ---IPPSI--VQ 539 (794)
Q Consensus 470 ~~L~~L~l~~n~~~~~~~~~~~~l-----~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~---l~~~l--~~ 539 (794)
++|++|++++|.+.+. |..++.+ ++|++|++++|.+.+..+..|+++++|++|++++|++.. +|..+ ..
T Consensus 121 ~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~ 199 (312)
T 1wwl_A 121 PDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLK 199 (312)
T ss_dssp CCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTS
T ss_pred CCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhcc
Confidence 6666666666655444 5444444 566666666666655555566666666666666665442 23333 55
Q ss_pred CCCCCEEEcCCCCCCCCccccccchhccccCCCCCCCccccCCCCCCCCCCCEEecCCCCCccCCCC-ccccCCCCCCeE
Q 003802 540 LVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIP-SDIGSLFSLEAI 618 (794)
Q Consensus 540 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~~l~~L~~L 618 (794)
+++|++|++++|........ ....+..+++|+.|++++|. +++..| ..+..+++|++|
T Consensus 200 l~~L~~L~L~~N~l~~~~~~--------------------~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L 258 (312)
T 1wwl_A 200 FPTLQVLALRNAGMETPSGV--------------------CSALAAARVQLQGLDLSHNS-LRDAAGAPSCDWPSQLNSL 258 (312)
T ss_dssp CTTCCEEECTTSCCCCHHHH--------------------HHHHHHTTCCCSEEECTTSC-CCSSCCCSCCCCCTTCCEE
T ss_pred CCCCCEEECCCCcCcchHHH--------------------HHHHHhcCCCCCEEECCCCc-CCcccchhhhhhcCCCCEE
Confidence 56666666666542100000 00002234556666666665 333222 334445566666
Q ss_pred eCCCCCCccCchhhhccCCCCEEecCCCc
Q 003802 619 DLSGNNFFSLPSSINQLLKLKILCLEKCR 647 (794)
Q Consensus 619 ~L~~n~l~~lp~~l~~l~~L~~L~L~~n~ 647 (794)
+|++|.++.+|..+. ++|++|+|++|+
T Consensus 259 ~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~ 285 (312)
T 1wwl_A 259 NLSFTGLKQVPKGLP--AKLSVLDLSYNR 285 (312)
T ss_dssp ECTTSCCSSCCSSCC--SEEEEEECCSSC
T ss_pred ECCCCccChhhhhcc--CCceEEECCCCC
Confidence 666666665555443 556666666655
No 74
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.86 E-value=9.1e-21 Score=192.09 Aligned_cols=199 Identities=19% Similarity=0.172 Sum_probs=114.0
Q ss_pred CceEEEcCCCCcccccccccccccCceeccCCCcCccCCCC-CCCCCCCCEEecccccccccccccccCccccccccccc
Q 003802 401 KLFKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLIRTPD-FTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKD 479 (794)
Q Consensus 401 ~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 479 (794)
+.++++++++.++.+|..+. ++|++|++++|.+...++. |.++++|++|++++|.+....+..+..+++|++|++++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 34566666666666665443 4566666666655554443 55666666666666554433333345555566666655
Q ss_pred cccccccccccCCCCCccEEEecCCCCCCCCCccccCCCCCcEEEccCccCcccCcccccCCCCCEEEcCCCCCCCCccc
Q 003802 480 CRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPPSIVQLVNLKIFSLHGCKGQPPKIL 559 (794)
Q Consensus 480 n~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~ 559 (794)
|.+....+..+..+++|++|++++|.+.+..+..|..+++|++|++++|.++.+|..
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~----------------------- 151 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKG----------------------- 151 (270)
T ss_dssp SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT-----------------------
T ss_pred CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHh-----------------------
Confidence 554443334445555566666665555555455555555666666655555544432
Q ss_pred cccchhccccCCCCCCCccccCCCCCCCCCCCEEecCCCCCccCCCCccccCCCCCCeEeCCCCCCccCchh-hhccCCC
Q 003802 560 SSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLPSS-INQLLKL 638 (794)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~-l~~l~~L 638 (794)
.+..+++|+.|++++|. +++..+..+..+++|++|+|++|.++.+|.. +..+++|
T Consensus 152 -----------------------~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 207 (270)
T 2o6q_A 152 -----------------------VFDKLTSLKELRLYNNQ-LKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKL 207 (270)
T ss_dssp -----------------------TTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred -----------------------HccCCcccceeEecCCc-CcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCC
Confidence 14445566666666665 3333344466667777777777777766543 5667777
Q ss_pred CEEecCCCcC
Q 003802 639 KILCLEKCRN 648 (794)
Q Consensus 639 ~~L~L~~n~~ 648 (794)
+.|+|++|+.
T Consensus 208 ~~L~l~~N~~ 217 (270)
T 2o6q_A 208 KMLQLQENPW 217 (270)
T ss_dssp CEEECCSSCB
T ss_pred CEEEecCCCe
Confidence 7777777763
No 75
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.86 E-value=1e-20 Score=192.68 Aligned_cols=191 Identities=19% Similarity=0.173 Sum_probs=155.2
Q ss_pred EEEcCcccCCCccccccCcceeeeecCCCCCCCC-CC-CCCCceEEEcCCCCcccccc-cccccccCceeccCCCcCccC
Q 003802 362 LEINNLYSSGNLEYLSNNLRYLKWHEYPFNSLPV-SF-RPEKLFKLNLCNSRIKYLWK-GIKPLKELKFMNLSHSCNLIR 438 (794)
Q Consensus 362 L~l~~n~~~~~~~~~~~~l~~L~~~~~~~~~l~~-~~-~~~~L~~L~L~~n~i~~l~~-~~~~l~~L~~L~L~~n~~~~~ 438 (794)
.+..+..+.........+++.|++.++.+..++. .+ .+++|++|++++|.++.++. .+..+++|++|++++|.+...
T Consensus 12 ~~c~~~~l~~ip~~l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 91 (276)
T 2z62_A 12 YQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL 91 (276)
T ss_dssp EECTTSCCSSCCSSSCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEE
T ss_pred EEecCCCccccCCCCCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCcc
Confidence 4444545544444455689999999999988875 33 68899999999999998875 589999999999999998888
Q ss_pred CCC-CCCCCCCCEEecccccccccccccccCcccccccccccccccc-ccccccCCCCCccEEEecCCCCCCCCCccccC
Q 003802 439 TPD-FTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLV-SFPKNVCLMKSLKILCLCGCLKLEKLPQDLGE 516 (794)
Q Consensus 439 ~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~ 516 (794)
.+. |.++++|++|++++|.+.+..+..+..+++|++|++++|.+.+ .+|..+..+++|++|++++|.+.+..+..+..
T Consensus 92 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 171 (276)
T 2z62_A 92 ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV 171 (276)
T ss_dssp CTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHH
T ss_pred ChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhh
Confidence 766 9999999999999999887777789999999999999998766 46899999999999999999998877777777
Q ss_pred CCCCc----EEEccCccCcccCcccccCCCCCEEEcCCCC
Q 003802 517 VECLE----ELDVGGTAIRQIPPSIVQLVNLKIFSLHGCK 552 (794)
Q Consensus 517 l~~L~----~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~ 552 (794)
+++|+ .|++++|.++.++.......+|+.|++++|.
T Consensus 172 l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~ 211 (276)
T 2z62_A 172 LHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQ 211 (276)
T ss_dssp HHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSC
T ss_pred hhhccccceeeecCCCcccccCccccCCCcccEEECCCCc
Confidence 77777 8899999888776654444445555554443
No 76
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.85 E-value=1.4e-20 Score=192.32 Aligned_cols=200 Identities=19% Similarity=0.149 Sum_probs=118.6
Q ss_pred cccccCceeccCCCcCccCCCCCCCCCCCCEEecccccccccccccccCccccccccccccccccccccccCCCCCccEE
Q 003802 420 KPLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKIL 499 (794)
Q Consensus 420 ~~l~~L~~L~L~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 499 (794)
.++++++.++++++.+...++.+. +++++|++++|.+.+..+..+..+++|++|++++|.+.+ ++.. ..+++|++|
T Consensus 7 ~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~-~~l~~L~~L 82 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQVD-GTLPVLGTL 82 (290)
T ss_dssp ECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EECC-SCCTTCCEE
T ss_pred cccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc-ccCC-CCCCcCCEE
Confidence 334444444444444433333322 345555555555444444455555555555555554332 2221 455566666
Q ss_pred EecCCCCCCCCCccccCCCCCcEEEccCccCcccC-cccccCCCCCEEEcCCCCCCCCccccccchhccccCCCCCCCcc
Q 003802 500 CLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIP-PSIVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMC 578 (794)
Q Consensus 500 ~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 578 (794)
++++|.+. .+|..+..+++|+.|++++|+++.+| ..+..+++|++|++++|....
T Consensus 83 ~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~----------------------- 138 (290)
T 1p9a_G 83 DLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT----------------------- 138 (290)
T ss_dssp ECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCC-----------------------
T ss_pred ECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCc-----------------------
Confidence 66665544 34555566666666666666666554 345556666666666655210
Q ss_pred ccCCCCCCCCCCCEEecCCCCCccCCCCccccCCCCCCeEeCCCCCCccCchhhhccCCCCEEecCCCcC
Q 003802 579 LSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLPSSINQLLKLKILCLEKCRN 648 (794)
Q Consensus 579 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~~ 648 (794)
.....+..+++|+.|++++|. ++...+..+..+++|+.|+|++|+++.+|..+..+++|+.|+|++|+.
T Consensus 139 ~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 139 LPPGLLTPTPKLEKLSLANNN-LTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp CCTTTTTTCTTCCEEECTTSC-CSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCB
T ss_pred cChhhcccccCCCEEECCCCc-CCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCc
Confidence 011225667788888888888 444444456788889999999998888888888888899999988874
No 77
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.85 E-value=5.7e-20 Score=186.20 Aligned_cols=173 Identities=17% Similarity=0.171 Sum_probs=140.0
Q ss_pred CcceeeeecCCCCCCCCCCCCCCceEEEcCCCCcccccc-cccccccCceeccCCCcCccCCCC-CCCCCCCCEEecccc
Q 003802 379 NLRYLKWHEYPFNSLPVSFRPEKLFKLNLCNSRIKYLWK-GIKPLKELKFMNLSHSCNLIRTPD-FTGVPNLERLNLEGC 456 (794)
Q Consensus 379 ~l~~L~~~~~~~~~l~~~~~~~~L~~L~L~~n~i~~l~~-~~~~l~~L~~L~L~~n~~~~~~~~-~~~l~~L~~L~l~~~ 456 (794)
+.+.+++.++.+..+|..++ .++++|++++|.++.++. .|.++++|++|++++|.+...++. |..+++|++|++++|
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~-~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n 95 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP-ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN 95 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC-TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSS
T ss_pred CCCEEEccCCCCCccCCCCC-CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCC
Confidence 44566666666667776554 689999999999998875 589999999999999988877666 788999999999999
Q ss_pred cccccccccccCccccccccccccccccccccccCCCCCccEEEecCCCCCCCCCccccCCCCCcEEEccCccCcccCcc
Q 003802 457 TRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPPS 536 (794)
Q Consensus 457 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~ 536 (794)
.+....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..|..+++|+.|++++|.++.++..
T Consensus 96 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 175 (270)
T 2o6q_A 96 KLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEG 175 (270)
T ss_dssp CCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred cCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChh
Confidence 88776667789999999999999998877777889999999999999988877666789999999999999998877653
Q ss_pred -cccCCCCCEEEcCCCC
Q 003802 537 -IVQLVNLKIFSLHGCK 552 (794)
Q Consensus 537 -l~~l~~L~~L~l~~~~ 552 (794)
+..+++|++|++++|.
T Consensus 176 ~~~~l~~L~~L~L~~N~ 192 (270)
T 2o6q_A 176 AFDKLTELKTLKLDNNQ 192 (270)
T ss_dssp TTTTCTTCCEEECCSSC
T ss_pred HhccCCCcCEEECCCCc
Confidence 4444555555544443
No 78
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.84 E-value=3.4e-20 Score=189.37 Aligned_cols=200 Identities=19% Similarity=0.083 Sum_probs=174.3
Q ss_pred hccCCCCcEEEEcCcccCCCccccccCcceeeeecCCCCCCCC-CC-CCCCceEEEcCCCCcccccccccccccCceecc
Q 003802 353 FSTMSNLRLLEINNLYSSGNLEYLSNNLRYLKWHEYPFNSLPV-SF-RPEKLFKLNLCNSRIKYLWKGIKPLKELKFMNL 430 (794)
Q Consensus 353 ~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~~~~~~~~l~~-~~-~~~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L 430 (794)
+++++++++++++++.++...+..+.+++.|++.++.+..++. .+ .+++|++|++++|.++.++.. ..+++|++|++
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~L 84 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDL 84 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEEC
T ss_pred ccccCCccEEECCCCCCCcCCCCCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEEC
Confidence 5677888888888888887666667788888888888777643 23 678999999999999998765 78999999999
Q ss_pred CCCcCccCCCCCCCCCCCCEEecccccccccccccccCccccccccccccccccccccccCCCCCccEEEecCCCCCCCC
Q 003802 431 SHSCNLIRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKL 510 (794)
Q Consensus 431 ~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~ 510 (794)
++|.+...+..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+....
T Consensus 85 s~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~ 164 (290)
T 1p9a_G 85 SHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELP 164 (290)
T ss_dssp CSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCC
T ss_pred CCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccC
Confidence 99988866666889999999999999988777788999999999999999987766677889999999999999988766
Q ss_pred CccccCCCCCcEEEccCccCcccCcccccCCCCCEEEcCCCCC
Q 003802 511 PQDLGEVECLEELDVGGTAIRQIPPSIVQLVNLKIFSLHGCKG 553 (794)
Q Consensus 511 ~~~~~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~ 553 (794)
+..|..+++|+.|++++|+++.+|..+..+++|+.|++++|..
T Consensus 165 ~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 165 AGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCB
T ss_pred HHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCc
Confidence 6678899999999999999999999999999999999999983
No 79
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.84 E-value=1.9e-20 Score=186.18 Aligned_cols=205 Identities=15% Similarity=0.172 Sum_probs=129.9
Q ss_pred CCCCCCCCCCCCceEEEcCCCCcccccc-cccccccCceeccCCCc-CccCCCC-CCCCCCCCEEeccc-cccccccccc
Q 003802 390 FNSLPVSFRPEKLFKLNLCNSRIKYLWK-GIKPLKELKFMNLSHSC-NLIRTPD-FTGVPNLERLNLEG-CTRLLEVHQS 465 (794)
Q Consensus 390 ~~~l~~~~~~~~L~~L~L~~n~i~~l~~-~~~~l~~L~~L~L~~n~-~~~~~~~-~~~l~~L~~L~l~~-~~~~~~~~~~ 465 (794)
+..+|. -+.+|++|++++|.++.+|. .|.++++|++|++++|. +....+. |.++++|++|++++ |.+....+..
T Consensus 23 l~~ip~--~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~ 100 (239)
T 2xwt_C 23 IQRIPS--LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDA 100 (239)
T ss_dssp CSSCCC--CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTS
T ss_pred ccccCC--CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHH
Confidence 555665 23477788888887777765 46777777777777775 5444443 66677777777776 5554444455
Q ss_pred ccCccccccccccccccccccccccCCCCCcc---EEEecCC-CCCCCCCccccCCCCCc-EEEccCccCcccCcccccC
Q 003802 466 VGTLKRLILLNLKDCRNLVSFPKNVCLMKSLK---ILCLCGC-LKLEKLPQDLGEVECLE-ELDVGGTAIRQIPPSIVQL 540 (794)
Q Consensus 466 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~---~L~L~~~-~~~~~~~~~~~~l~~L~-~L~l~~~~l~~l~~~l~~l 540 (794)
|.++++|++|++++|.+.+ +|. +..+++|+ +|++++| .+.+..+..|.++++|+ .|++++|.++.+|...
T Consensus 101 f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~--- 175 (239)
T 2xwt_C 101 LKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYA--- 175 (239)
T ss_dssp EECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTT---
T ss_pred hCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhh---
Confidence 6666677777776666443 454 55555555 6666666 44443344456666666 6666666655554322
Q ss_pred CCCCEEEcCCCCCCCCccccccchhccccCCCCCCCccccCCCCCCCCCCCEEecCCCCCccCCCCccccCC-CCCCeEe
Q 003802 541 VNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSL-FSLEAID 619 (794)
Q Consensus 541 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l-~~L~~L~ 619 (794)
+.. ++|+.|++++|..+++..+..+..+ ++|+.|+
T Consensus 176 -------------------------------------------~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~ 211 (239)
T 2xwt_C 176 -------------------------------------------FNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLD 211 (239)
T ss_dssp -------------------------------------------TTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEE
T ss_pred -------------------------------------------cCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEE
Confidence 222 4677777777732333345567777 8888888
Q ss_pred CCCCCCccCchhhhccCCCCEEecCCCc
Q 003802 620 LSGNNFFSLPSSINQLLKLKILCLEKCR 647 (794)
Q Consensus 620 L~~n~l~~lp~~l~~l~~L~~L~L~~n~ 647 (794)
+++|.++.+|.. .+++|+.|+++++.
T Consensus 212 l~~N~l~~l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 212 VSQTSVTALPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp CTTCCCCCCCCT--TCTTCSEEECTTC-
T ss_pred CCCCccccCChh--HhccCceeeccCcc
Confidence 888888877754 67788888887764
No 80
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.84 E-value=5.5e-21 Score=193.86 Aligned_cols=201 Identities=18% Similarity=0.121 Sum_probs=102.9
Q ss_pred ccccCceeccCCCcCccCCCCCCCCCCCCEEecccccccccccccccCccccccccccccccccccccccCCCCCccEEE
Q 003802 421 PLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILC 500 (794)
Q Consensus 421 ~l~~L~~L~L~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 500 (794)
.+++|+.|++++|.+. ..+.+..+++|++|++++|.+.+ + ..+..+++|++|++++|.+.+..+..+..+++|++|+
T Consensus 39 ~l~~L~~L~l~~~~i~-~~~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 115 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIK-SVQGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV 115 (272)
T ss_dssp HHTTCCEEECTTSCCC-CCTTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred cccceeeeeeCCCCcc-cccccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEE
Confidence 3444444444444322 22334445555555555544332 1 2455555555555555554444444455556666666
Q ss_pred ecCCCCCCCCCccccCCCCCcEEEccCccCcccCcc-cccCCCCCEEEcCCCCCCCCccccccchhccccCCCCCCCccc
Q 003802 501 LCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPPS-IVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCL 579 (794)
Q Consensus 501 L~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 579 (794)
+++|.+.+..+..++.+++|++|++++|.++.+|.. +..+++|+.|++++|.... .
T Consensus 116 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-----------------------~ 172 (272)
T 3rfs_A 116 LVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS-----------------------L 172 (272)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-----------------------C
T ss_pred CCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCc-----------------------c
Confidence 666555554444455666666666666665554432 3445555555555544110 0
Q ss_pred cCCCCCCCCCCCEEecCCCCCccCCCCccccCCCCCCeEeCCCCCCccCchhhhccCCCCEEecCCCcCCCCCCC
Q 003802 580 SFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLPSSINQLLKLKILCLEKCRNLKSLPE 654 (794)
Q Consensus 580 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~~~ 654 (794)
....+..+++|+.|++++|. +++..+..+..+++|+.|++++|.+. +.+++|+.|+++.|...+.+|.
T Consensus 173 ~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~------~~~~~l~~l~~~~n~~~g~ip~ 240 (272)
T 3rfs_A 173 PEGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNPWD------CTCPGIRYLSEWINKHSGVVRN 240 (272)
T ss_dssp CTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCBC------CCTTTTHHHHHHHHHTGGGBBC
T ss_pred CHHHhcCCccCCEEECCCCc-CCccCHHHHhCCcCCCEEEccCCCcc------ccCcHHHHHHHHHHhCCCcccC
Confidence 00124455566666666666 34444444566666666666666544 2244566666666665555543
No 81
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.83 E-value=2.3e-20 Score=189.28 Aligned_cols=202 Identities=19% Similarity=0.119 Sum_probs=94.9
Q ss_pred CceEEEcCCCCcccccccccccccCceeccCCCcCccCCCCCCCCCCCCEEecccccccccccccccCcccccccccccc
Q 003802 401 KLFKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDC 480 (794)
Q Consensus 401 ~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n 480 (794)
+|+.|++++|.++.++ .+..+++|++|++++|.+.. .+.+..+++|++|++++|.+.+..+..+..+++|++|++++|
T Consensus 42 ~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 119 (272)
T 3rfs_A 42 SIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHD-ISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVEN 119 (272)
T ss_dssp TCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCC-CGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred ceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCC-chhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCC
Confidence 4444444444444332 24444444444444444332 223444445555555554444333334444555555555554
Q ss_pred ccccccccccCCCCCccEEEecCCCCCCCCCccccCCCCCcEEEccCccCcccCcc-cccCCCCCEEEcCCCCCCCCccc
Q 003802 481 RNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPPS-IVQLVNLKIFSLHGCKGQPPKIL 559 (794)
Q Consensus 481 ~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~-l~~l~~L~~L~l~~~~~~~~~~~ 559 (794)
.+.+..+..+..+++|++|++++|.+.+..+..++.+++|+.|++++|.++.++.. +..+++|+.|++++|....
T Consensus 120 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~---- 195 (272)
T 3rfs_A 120 QLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKS---- 195 (272)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC----
T ss_pred cCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCc----
Confidence 44433333444555555555555544444444445555555555555555544332 3445555555555544110
Q ss_pred cccchhccccCCCCCCCccccCCCCCCCCCCCEEecCCCCCccCCCCccccCCCCCCeEeCCCCCCc-cCchhhhcc
Q 003802 560 SSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFF-SLPSSINQL 635 (794)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l 635 (794)
.....+..+++|+.|++++|.+ . +.+++|+.|++..|.++ .+|.+++.+
T Consensus 196 -------------------~~~~~~~~l~~L~~L~l~~N~~-~-------~~~~~l~~l~~~~n~~~g~ip~~~~~~ 245 (272)
T 3rfs_A 196 -------------------VPDGVFDRLTSLQYIWLHDNPW-D-------CTCPGIRYLSEWINKHSGVVRNSAGSV 245 (272)
T ss_dssp -------------------CCTTTTTTCTTCCEEECCSSCB-C-------CCTTTTHHHHHHHHHTGGGBBCTTSCB
T ss_pred -------------------cCHHHHhCCcCCCEEEccCCCc-c-------ccCcHHHHHHHHHHhCCCcccCccccc
Confidence 0001244555666666666652 1 23445666666666555 555555444
No 82
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.82 E-value=4.3e-20 Score=191.29 Aligned_cols=225 Identities=18% Similarity=0.136 Sum_probs=170.7
Q ss_pred CCCCceEEEcCCCCccc--ccc--cccccccCceeccCCCcCccCCCC-C--CCCCCCCEEeccccccccccc----ccc
Q 003802 398 RPEKLFKLNLCNSRIKY--LWK--GIKPLKELKFMNLSHSCNLIRTPD-F--TGVPNLERLNLEGCTRLLEVH----QSV 466 (794)
Q Consensus 398 ~~~~L~~L~L~~n~i~~--l~~--~~~~l~~L~~L~L~~n~~~~~~~~-~--~~l~~L~~L~l~~~~~~~~~~----~~~ 466 (794)
....++.+.+.++.+.. +.. .+..+++|++|++++|.+....+. + ..+++|++|++++|.+.+..+ ..+
T Consensus 62 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~ 141 (310)
T 4glp_A 62 KALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQ 141 (310)
T ss_dssp SSCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHT
T ss_pred hhcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHh
Confidence 34467788888877652 111 133457799999999988877766 5 889999999999998876544 345
Q ss_pred cCccccccccccccccccccccccCCCCCccEEEecCCCCCCC--C--CccccCCCCCcEEEccCccCcccCcc----cc
Q 003802 467 GTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEK--L--PQDLGEVECLEELDVGGTAIRQIPPS----IV 538 (794)
Q Consensus 467 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~~~~~~~--~--~~~~~~l~~L~~L~l~~~~l~~l~~~----l~ 538 (794)
..+++|++|++++|.+.+..|..++.+++|++|++++|.+.+. + +..++.+++|++|++++|.++.++.. +.
T Consensus 142 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~ 221 (310)
T 4glp_A 142 WLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAA 221 (310)
T ss_dssp TBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHH
T ss_pred hhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHh
Confidence 6789999999999998777778889999999999999987652 2 23347889999999999999866652 46
Q ss_pred cCCCCCEEEcCCCCCCC--CccccccchhccccCCCCCCCccccCCCCCCCCCCCEEecCCCCCccCCCCccccCCCCCC
Q 003802 539 QLVNLKIFSLHGCKGQP--PKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLE 616 (794)
Q Consensus 539 ~l~~L~~L~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~ 616 (794)
.+++|++|++++|.... |. .+..+..+++|++|++++|.+. .+|..+. ++|+
T Consensus 222 ~l~~L~~L~Ls~N~l~~~~p~----------------------~~~~~~~~~~L~~L~Ls~N~l~--~lp~~~~--~~L~ 275 (310)
T 4glp_A 222 AGVQPHSLDLSHNSLRATVNP----------------------SAPRCMWSSALNSLNLSFAGLE--QVPKGLP--AKLR 275 (310)
T ss_dssp HTCCCSSEECTTSCCCCCCCS----------------------CCSSCCCCTTCCCEECCSSCCC--SCCSCCC--SCCS
T ss_pred cCCCCCEEECCCCCCCccchh----------------------hHHhccCcCcCCEEECCCCCCC--chhhhhc--CCCC
Confidence 78999999999987221 11 1122333479999999999854 3777664 7999
Q ss_pred eEeCCCCCCccCchhhhccCCCCEEecCCCcCC
Q 003802 617 AIDLSGNNFFSLPSSINQLLKLKILCLEKCRNL 649 (794)
Q Consensus 617 ~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~~~ 649 (794)
+|+|++|+++.+|. +..+++|+.|+|++|++.
T Consensus 276 ~L~Ls~N~l~~~~~-~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 276 VLDLSSNRLNRAPQ-PDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp CEECCSCCCCSCCC-TTSCCCCSCEECSSTTTS
T ss_pred EEECCCCcCCCCch-hhhCCCccEEECcCCCCC
Confidence 99999999998874 788899999999999854
No 83
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.82 E-value=1.4e-22 Score=230.98 Aligned_cols=365 Identities=13% Similarity=0.013 Sum_probs=193.0
Q ss_pred cCCCCcEEEEcCcccCCCcccc----ccC-cceeeeecCCCCC---CCCCC-CCCCceEEEcCCCCccc-----cccccc
Q 003802 355 TMSNLRLLEINNLYSSGNLEYL----SNN-LRYLKWHEYPFNS---LPVSF-RPEKLFKLNLCNSRIKY-----LWKGIK 420 (794)
Q Consensus 355 ~~~~L~~L~l~~n~~~~~~~~~----~~~-l~~L~~~~~~~~~---l~~~~-~~~~L~~L~L~~n~i~~-----l~~~~~ 420 (794)
.+++|++|++++|.+++..+.. +.. |+.|++.++.... ++... .+++|++|+|++|.++. ++....
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 6777777777777665433222 223 7777776654110 00001 34677777777776542 223345
Q ss_pred ccccCceeccCCCcCccCC----CC-CCCCCCCCEEecccccccccccccccCccccccccccccccc---cccccccCC
Q 003802 421 PLKELKFMNLSHSCNLIRT----PD-FTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNL---VSFPKNVCL 492 (794)
Q Consensus 421 ~l~~L~~L~L~~n~~~~~~----~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~---~~~~~~~~~ 492 (794)
.+++|++|++++|.+.... +. +.++++|++|++++|.+.+ +|..+..+++|++|+++.+... ...+..+..
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 268 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVF 268 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCC
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhc
Confidence 6677777777777654221 11 4456777777777766543 5566677777777777643222 233345566
Q ss_pred CCCccEEEecCCCCCCCCCccccCCCCCcEEEccCccCc--ccCcccccCCCCCEEEcCCCCC--CCCccccccchhccc
Q 003802 493 MKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIR--QIPPSIVQLVNLKIFSLHGCKG--QPPKILSSNFFLSLL 568 (794)
Q Consensus 493 l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~--~l~~~l~~l~~L~~L~l~~~~~--~~~~~~~~~~~~~~~ 568 (794)
+++|+.|+++++ ....+|..+..+++|++|++++|.++ .++..+..+++|++|+++++.. ..+.....+..+..+
T Consensus 269 ~~~L~~L~l~~~-~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L 347 (592)
T 3ogk_B 269 PRKLCRLGLSYM-GPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRL 347 (592)
T ss_dssp CTTCCEEEETTC-CTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEE
T ss_pred cccccccCcccc-chhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEE
Confidence 677777777663 33445556666777777777777655 2223346677777777763210 000000000000000
Q ss_pred cCC-----------CCCCCccccCCC-CCCCCCCCEEecCCCCCccCCCCccccC-CCCCCeEeCC----CCCCccC---
Q 003802 569 LPN-----------KNSDSMCLSFPR-FTGLSSLQTLDLSDCNLLEGAIPSDIGS-LFSLEAIDLS----GNNFFSL--- 628 (794)
Q Consensus 569 ~~~-----------~~~~~~~~~~~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~~-l~~L~~L~L~----~n~l~~l--- 628 (794)
.+. .+... ...+.. ...+++|++|+++.|. +++..+..+.. +++|+.|+++ .|.++..
T Consensus 348 ~L~~g~~~~~~~~~~~~~~-~~~~~~l~~~~~~L~~L~l~~~~-l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~ 425 (592)
T 3ogk_B 348 RIERGADEQGMEDEEGLVS-QRGLIALAQGCQELEYMAVYVSD-ITNESLESIGTYLKNLCDFRLVLLDREERITDLPLD 425 (592)
T ss_dssp EEECCCCSSTTSSTTCCCC-HHHHHHHHHHCTTCSEEEEEESC-CCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCH
T ss_pred EeecCccccccccccCccC-HHHHHHHHhhCccCeEEEeecCC-ccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHH
Confidence 000 00000 000011 2235566666665444 33333333333 5566666664 3345432
Q ss_pred ---chhhhccCCCCEEecCCCcCCCCCCCCCccccccccccccccccccccccccCCC-CceEEEeCCCCchhhhhhhhh
Q 003802 629 ---PSSINQLLKLKILCLEKCRNLKSLPELPPEIVFVGAEDCTSLETISAFAKLSRSP-NIALNFLNCFKLVEDQVSKDN 704 (794)
Q Consensus 629 ---p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~n~~~~~-~~~~~~~~~~~L~~L~l~~N~ 704 (794)
+..+..+++|++|++++|... +.. ..+..+ ...|++|+.|++..|. ... ..+..+.+|++|++|++++|.
T Consensus 426 ~~~~~~~~~~~~L~~L~L~~~~~~--l~~--~~~~~~-~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~ 499 (592)
T 3ogk_B 426 NGVRSLLIGCKKLRRFAFYLRQGG--LTD--LGLSYI-GQYSPNVRWMLLGYVG-ESDEGLMEFSRGCPNLQKLEMRGCC 499 (592)
T ss_dssp HHHHHHHHHCTTCCEEEEECCGGG--CCH--HHHHHH-HHSCTTCCEEEECSCC-SSHHHHHHHHTCCTTCCEEEEESCC
T ss_pred HHHHHHHHhCCCCCEEEEecCCCC--ccH--HHHHHH-HHhCccceEeeccCCC-CCHHHHHHHHhcCcccCeeeccCCC
Confidence 222455666666666544320 000 000000 1236777888777662 221 223345689999999999999
Q ss_pred HHHHHHHHHHhhhccccccCccccc
Q 003802 705 LAVTLMKQWLLSYHSLVAWTDSTRR 729 (794)
Q Consensus 705 l~~~~~~~~~~~~~~l~~~~~~~~~ 729 (794)
++......+...++.+..+....+.
T Consensus 500 l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 500 FSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp CBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred CcHHHHHHHHHhcCccCeeECcCCc
Confidence 8877777777777777777765554
No 84
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.81 E-value=5.4e-21 Score=201.10 Aligned_cols=223 Identities=17% Similarity=0.157 Sum_probs=168.2
Q ss_pred CceEEEcCCCCccccccccccc--ccCceeccCCCcCccCCCCCCCCCCCCEEeccccccccc-ccccccCccccccccc
Q 003802 401 KLFKLNLCNSRIKYLWKGIKPL--KELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCTRLLE-VHQSVGTLKRLILLNL 477 (794)
Q Consensus 401 ~L~~L~L~~n~i~~l~~~~~~l--~~L~~L~L~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l 477 (794)
.++.++++++.+. +..+..+ ++++.|++++|.+....+.+..+++|++|++++|.+... ++..+..+++|++|++
T Consensus 48 ~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L 125 (336)
T 2ast_B 48 LWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSL 125 (336)
T ss_dssp TSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEEC
T ss_pred hheeeccccccCC--HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeC
Confidence 4678888888776 4446666 889999999988877777777889999999999887655 7777888999999999
Q ss_pred cccccccccccccCCCCCccEEEecCCC-CCC-CCCccccCCCCCcEEEccCc-cCcc--cCcccccCC-CCCEEEcCCC
Q 003802 478 KDCRNLVSFPKNVCLMKSLKILCLCGCL-KLE-KLPQDLGEVECLEELDVGGT-AIRQ--IPPSIVQLV-NLKIFSLHGC 551 (794)
Q Consensus 478 ~~n~~~~~~~~~~~~l~~L~~L~L~~~~-~~~-~~~~~~~~l~~L~~L~l~~~-~l~~--l~~~l~~l~-~L~~L~l~~~ 551 (794)
++|.+.+..+..++.+++|++|++++|. +.+ .++..+.++++|++|++++| .++. ++..+..++ +|++|++++|
T Consensus 126 ~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~ 205 (336)
T 2ast_B 126 EGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY 205 (336)
T ss_dssp TTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSC
T ss_pred cCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCC
Confidence 9988777778888889999999999984 443 35666788889999999998 8873 677778888 8999999887
Q ss_pred CCCCCccccccchhccccCCCCCCCccccCC-CCCCCCCCCEEecCCCCCccCCCCccccCCCCCCeEeCCCCC-Cc-cC
Q 003802 552 KGQPPKILSSNFFLSLLLPNKNSDSMCLSFP-RFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNN-FF-SL 628 (794)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~n~-l~-~l 628 (794)
..... ...++ .+..+++|+.|++++|..+++..+..+..+++|++|++++|. ++ ..
T Consensus 206 ~~~~~---------------------~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 264 (336)
T 2ast_B 206 RKNLQ---------------------KSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPET 264 (336)
T ss_dssp GGGSC---------------------HHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGG
T ss_pred cccCC---------------------HHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHH
Confidence 41100 00011 134577888888888885555566678888888888888884 33 11
Q ss_pred chhhhccCCCCEEecCCC
Q 003802 629 PSSINQLLKLKILCLEKC 646 (794)
Q Consensus 629 p~~l~~l~~L~~L~L~~n 646 (794)
...+.++++|+.|++++|
T Consensus 265 ~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 265 LLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp GGGGGGCTTCCEEECTTS
T ss_pred HHHHhcCCCCCEEeccCc
Confidence 225677888888888887
No 85
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.81 E-value=1.3e-19 Score=186.97 Aligned_cols=192 Identities=19% Similarity=0.201 Sum_probs=122.0
Q ss_pred ccccCceeccCCCcCccCCCCCCCCCCCCEEecccccccccccccccCccccccccccccccccccccccCCCCCccEEE
Q 003802 421 PLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILC 500 (794)
Q Consensus 421 ~l~~L~~L~L~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 500 (794)
.+++|++|++++|.+.. .+.+..+++|++|++++|.+.... . +..+++|++|++++|.+.+ ++ .+..+++|++|+
T Consensus 39 ~l~~L~~L~l~~~~i~~-l~~~~~l~~L~~L~L~~n~i~~~~-~-~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~ 113 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTT-IEGVQYLNNLIGLELKDNQITDLA-P-LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTLD 113 (308)
T ss_dssp HHHTCCEEECTTSCCCC-CTTGGGCTTCCEEECCSSCCCCCG-G-GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEE
T ss_pred HcCCcCEEEeeCCCccC-chhhhccCCCCEEEccCCcCCCCh-h-HccCCCCCEEEccCCcCCC-ch-hhcCCCCCCEEE
Confidence 34455555555554332 234445555555555555443322 2 5555666666666655332 23 456666777777
Q ss_pred ecCCCCCCCCCccccCCCCCcEEEccCccCcccCcccccCCCCCEEEcCCCCCCCCccccccchhccccCCCCCCCcccc
Q 003802 501 LCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPPSIVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLS 580 (794)
Q Consensus 501 L~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 580 (794)
+++|.+.+. + .+..+++|++|++++|.++.++. +..+++|+.|++++|... .
T Consensus 114 l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~-------------------------~ 165 (308)
T 1h6u_A 114 LTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVS-------------------------D 165 (308)
T ss_dssp CTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCC-------------------------C
T ss_pred CCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCC-------------------------C
Confidence 777665542 2 26677777777777777776654 667777777777776521 1
Q ss_pred CCCCCCCCCCCEEecCCCCCccCCCCccccCCCCCCeEeCCCCCCccCchhhhccCCCCEEecCCCcCC
Q 003802 581 FPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLPSSINQLLKLKILCLEKCRNL 649 (794)
Q Consensus 581 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~~~ 649 (794)
++.+..+++|+.|++++|.+ ++ ++. +..+++|++|++++|.++.++ .+..+++|+.|++++|+..
T Consensus 166 ~~~l~~l~~L~~L~l~~n~l-~~-~~~-l~~l~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 166 LTPLANLSKLTTLKADDNKI-SD-ISP-LASLPNLIEVHLKNNQISDVS-PLANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp CGGGTTCTTCCEEECCSSCC-CC-CGG-GGGCTTCCEEECTTSCCCBCG-GGTTCTTCCEEEEEEEEEE
T ss_pred ChhhcCCCCCCEEECCCCcc-Cc-Chh-hcCCCCCCEEEccCCccCccc-cccCCCCCCEEEccCCeee
Confidence 12256677888888888884 32 333 788889999999999988887 4788899999999998853
No 86
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.81 E-value=2e-19 Score=185.63 Aligned_cols=195 Identities=16% Similarity=0.246 Sum_probs=128.6
Q ss_pred CCCceEEEcCCCCcccccccccccccCceeccCCCcCccCCCCCCCCCCCCEEecccccccccccccccCcccccccccc
Q 003802 399 PEKLFKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLK 478 (794)
Q Consensus 399 ~~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 478 (794)
+++|++|++++|.++.++ .+..+++|++|++++|.+....+ +..+++|++|++++|.+.+ ++ .+..+++|++|+++
T Consensus 40 l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~l~ 115 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTLDLT 115 (308)
T ss_dssp HHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEECT
T ss_pred cCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCC-ch-hhcCCCCCCEEECC
Confidence 457777777777777765 46777777777777776655444 7777777777777776543 32 56777777777777
Q ss_pred ccccccccccccCCCCCccEEEecCCCCCCCCCccccCCCCCcEEEccCccCcccCcccccCCCCCEEEcCCCCCCCCcc
Q 003802 479 DCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPPSIVQLVNLKIFSLHGCKGQPPKI 558 (794)
Q Consensus 479 ~n~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~ 558 (794)
+|.+.+ ++. +..+++|++|++++|.+.+..+ +..+++|+.|++++|.++.++. +..+++|+.|++++|...
T Consensus 116 ~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~---- 186 (308)
T 1h6u_A 116 STQITD-VTP-LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKIS---- 186 (308)
T ss_dssp TSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC----
T ss_pred CCCCCC-chh-hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCccC----
Confidence 776543 333 6677777777777776655333 6677777777777777776655 667777777777776521
Q ss_pred ccccchhccccCCCCCCCccccCCCCCCCCCCCEEecCCCCCccCCCCccccCCCCCCeEeCCCCCCccCch
Q 003802 559 LSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLPS 630 (794)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~ 630 (794)
.++.+..+++|+.|++++|.+.. ++ .+..+++|+.|++++|.++..|.
T Consensus 187 ---------------------~~~~l~~l~~L~~L~L~~N~l~~--~~-~l~~l~~L~~L~l~~N~i~~~~~ 234 (308)
T 1h6u_A 187 ---------------------DISPLASLPNLIEVHLKNNQISD--VS-PLANTSNLFIVTLTNQTITNQPV 234 (308)
T ss_dssp ---------------------CCGGGGGCTTCCEEECTTSCCCB--CG-GGTTCTTCCEEEEEEEEEECCCE
T ss_pred ---------------------cChhhcCCCCCCEEEccCCccCc--cc-cccCCCCCCEEEccCCeeecCCe
Confidence 11224556677777777777432 33 36677777777777777766553
No 87
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.80 E-value=3.6e-22 Score=227.63 Aligned_cols=342 Identities=14% Similarity=-0.005 Sum_probs=228.6
Q ss_pred eEEEEEecCCcc-cccc-hhhhccCCCCcEEEEcCcccCCC-------ccccccCcceeeeecCCCCCCCCC-----C-C
Q 003802 334 AVEAIIVDVPEM-TELE-AKSFSTMSNLRLLEINNLYSSGN-------LEYLSNNLRYLKWHEYPFNSLPVS-----F-R 398 (794)
Q Consensus 334 ~~~~l~l~~~~~-~~~~-~~~~~~~~~L~~L~l~~n~~~~~-------~~~~~~~l~~L~~~~~~~~~l~~~-----~-~ 398 (794)
.++.+.+..+.. .... .....++++|++|++++|.+.+. .+..+.+|+.|++.++.+..+... + .
T Consensus 139 ~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~ 218 (592)
T 3ogk_B 139 DLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARN 218 (592)
T ss_dssp GCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHH
T ss_pred cCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhh
Confidence 477888877642 1111 22335889999999999987655 233456777777777666533211 1 4
Q ss_pred CCCceEEEcCCCCcccccccccccccCceeccCCCcCccC----CCCCCCCCCCCEEecccccccccccccccCcccccc
Q 003802 399 PEKLFKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLIR----TPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLIL 474 (794)
Q Consensus 399 ~~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~n~~~~~----~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 474 (794)
+++|++|++++|.+..+|..+..+++|++|+++.+..... ...+..+++|+.|+++++ ....+|..+..+++|++
T Consensus 219 ~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~l~~~~~~~~~L~~ 297 (592)
T 3ogk_B 219 CRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM-GPNEMPILFPFAAQIRK 297 (592)
T ss_dssp CTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTC-CTTTGGGGGGGGGGCCE
T ss_pred CCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCcccc-chhHHHHHHhhcCCCcE
Confidence 6899999999999999998899999999999986433211 123777889999999885 35567778888999999
Q ss_pred cccccccccccc-ccccCCCCCccEEEecCCCCCCCCCccccCCCCCcEEEccC-----------ccCc--ccCcccccC
Q 003802 475 LNLKDCRNLVSF-PKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGG-----------TAIR--QIPPSIVQL 540 (794)
Q Consensus 475 L~l~~n~~~~~~-~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~-----------~~l~--~l~~~l~~l 540 (794)
|++++|.+.... +..+..+++|++|+++++.....++..+..+++|++|++++ +.++ .++.....+
T Consensus 298 L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~ 377 (592)
T 3ogk_B 298 LDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGC 377 (592)
T ss_dssp EEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHC
T ss_pred EecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhC
Confidence 999998854432 34467899999999984332233444456788999999993 5565 234445668
Q ss_pred CCCCEEEcCCCCCCCCccccccchhccccCCCCCCCccccCCCCC-CCCCCCEEecC----CCCCccCC-----CCcccc
Q 003802 541 VNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPRFT-GLSSLQTLDLS----DCNLLEGA-----IPSDIG 610 (794)
Q Consensus 541 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~L~~L~l~----~n~~~~~~-----~~~~~~ 610 (794)
++|++|+++.+.... ..+..+. .+++|+.|+++ .|. +++. ++..+.
T Consensus 378 ~~L~~L~l~~~~l~~-----------------------~~~~~l~~~~~~L~~L~l~~~~~~n~-l~~~p~~~~~~~~~~ 433 (592)
T 3ogk_B 378 QELEYMAVYVSDITN-----------------------ESLESIGTYLKNLCDFRLVLLDREER-ITDLPLDNGVRSLLI 433 (592)
T ss_dssp TTCSEEEEEESCCCH-----------------------HHHHHHHHHCCSCCEEEEEECSCCSC-CSSCCCHHHHHHHHH
T ss_pred ccCeEEEeecCCccH-----------------------HHHHHHHhhCCCCcEEEEeecCCCcc-ccCchHHHHHHHHHH
Confidence 999999996554211 0111122 36789999996 334 4432 333466
Q ss_pred CCCCCCeEeCCCCC--Cc-cCchhh-hccCCCCEEecCCCcCCCC-CCCCCccccccccccccccccccccccccCCCC-
Q 003802 611 SLFSLEAIDLSGNN--FF-SLPSSI-NQLLKLKILCLEKCRNLKS-LPELPPEIVFVGAEDCTSLETISAFAKLSRSPN- 684 (794)
Q Consensus 611 ~l~~L~~L~L~~n~--l~-~lp~~l-~~l~~L~~L~L~~n~~~~~-~~~~~~~L~~L~l~~~~~L~~l~~~~n~~~~~~- 684 (794)
++++|++|++++|. ++ ..+..+ ..+++|+.|+|++|..... ++. .+.+|++|+.|++++|. +...
T Consensus 434 ~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~--------~~~~~~~L~~L~l~~n~-l~~~~ 504 (592)
T 3ogk_B 434 GCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLME--------FSRGCPNLQKLEMRGCC-FSERA 504 (592)
T ss_dssp HCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHH--------HHTCCTTCCEEEEESCC-CBHHH
T ss_pred hCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHH--------HHhcCcccCeeeccCCC-CcHHH
Confidence 78999999998764 55 333344 4488999999998874321 111 13556777777777663 2211
Q ss_pred ceEEEeCCCCchhhhhhhhhHHHHH
Q 003802 685 IALNFLNCFKLVEDQVSKDNLAVTL 709 (794)
Q Consensus 685 ~~~~~~~~~~L~~L~l~~N~l~~~~ 709 (794)
.+..+..|++|++|++++|+++...
T Consensus 505 ~~~~~~~l~~L~~L~ls~n~it~~~ 529 (592)
T 3ogk_B 505 IAAAVTKLPSLRYLWVQGYRASMTG 529 (592)
T ss_dssp HHHHHHHCSSCCEEEEESCBCCTTC
T ss_pred HHHHHHhcCccCeeECcCCcCCHHH
Confidence 2223457899999999999876543
No 88
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.80 E-value=9.3e-19 Score=184.42 Aligned_cols=238 Identities=17% Similarity=0.190 Sum_probs=175.2
Q ss_pred ceeeeecCCCCCCCCCCCCCCceEEEcCCCCccccccc-ccccccCceeccCCCcCccCCCC--CCCCCCCCE-Eecccc
Q 003802 381 RYLKWHEYPFNSLPVSFRPEKLFKLNLCNSRIKYLWKG-IKPLKELKFMNLSHSCNLIRTPD--FTGVPNLER-LNLEGC 456 (794)
Q Consensus 381 ~~L~~~~~~~~~l~~~~~~~~L~~L~L~~n~i~~l~~~-~~~l~~L~~L~L~~n~~~~~~~~--~~~l~~L~~-L~l~~~ 456 (794)
+.++..++.++.+|..+ +.++++|+|++|.|+.+|.. |.++++|++|+|++|.+.+.++. |.++++|+. +.+.+|
T Consensus 12 ~~v~C~~~~Lt~iP~~l-~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N 90 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL-PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90 (350)
T ss_dssp TEEEEESTTCCSCCTTC-CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEET
T ss_pred CEEEecCCCCCccCcCc-CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCC
Confidence 34566677777888766 46899999999999999864 89999999999999988665543 888988776 555566
Q ss_pred cccccccccccCccccccccccccccccccccccCCCCCccEEEecCCCCCCCCC-ccccCCC-CCcEEEccCccCcccC
Q 003802 457 TRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLP-QDLGEVE-CLEELDVGGTAIRQIP 534 (794)
Q Consensus 457 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~-~~~~~l~-~L~~L~l~~~~l~~l~ 534 (794)
.+....|..|..+++|++|++++|.+....+..+....++..|++.++.....++ ..|..+. .++.|++++|.++.+|
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~ 170 (350)
T 4ay9_X 91 NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIH 170 (350)
T ss_dssp TCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEEC
T ss_pred cccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCC
Confidence 6666667889999999999999998766666666677788899997765555444 4466654 6889999999999998
Q ss_pred cccccCCCCCEEEcCCCCCCCCccccccchhccccCCCCCCCccccCCCCCCCCCCCEEecCCCCCccCCCCccccCCCC
Q 003802 535 PSIVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFS 614 (794)
Q Consensus 535 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~ 614 (794)
.......+|+.|++.++.... ......|.++++|+.|++++|.+.. +|. ..+.+
T Consensus 171 ~~~f~~~~L~~l~l~~~n~l~----------------------~i~~~~f~~l~~L~~LdLs~N~l~~--lp~--~~~~~ 224 (350)
T 4ay9_X 171 NSAFNGTQLDELNLSDNNNLE----------------------ELPNDVFHGASGPVILDISRTRIHS--LPS--YGLEN 224 (350)
T ss_dssp TTSSTTEEEEEEECTTCTTCC----------------------CCCTTTTTTEECCSEEECTTSCCCC--CCS--SSCTT
T ss_pred hhhccccchhHHhhccCCccc----------------------CCCHHHhccCcccchhhcCCCCcCc--cCh--hhhcc
Confidence 877777788888887543100 1111336778888888888888533 544 23556
Q ss_pred CCeEeCCCC-CCccCchhhhccCCCCEEecCCC
Q 003802 615 LEAIDLSGN-NFFSLPSSINQLLKLKILCLEKC 646 (794)
Q Consensus 615 L~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~n 646 (794)
|+.|.+.++ .++.+| .+..+++|+.++++++
T Consensus 225 L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 225 LKKLRARSTYNLKKLP-TLEKLVALMEASLTYP 256 (350)
T ss_dssp CCEEECTTCTTCCCCC-CTTTCCSCCEEECSCH
T ss_pred chHhhhccCCCcCcCC-CchhCcChhhCcCCCC
Confidence 666665554 566777 5777888888888754
No 89
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.80 E-value=3.7e-20 Score=194.72 Aligned_cols=228 Identities=18% Similarity=0.183 Sum_probs=120.3
Q ss_pred ceEEEcCCCCcccccccccccccCceeccCCCcCccC-CCC-CCCCCCCCEEecccccccccccccccCccccccccccc
Q 003802 402 LFKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLIR-TPD-FTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKD 479 (794)
Q Consensus 402 L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~n~~~~~-~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 479 (794)
+++|++++|.+...+..+..+++|++|++++|.+... .+. +..+++|++|++++|.+.+..+..+..+++|++|++++
T Consensus 72 l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~ 151 (336)
T 2ast_B 72 VIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSG 151 (336)
T ss_dssp CSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTT
T ss_pred ceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCC
Confidence 3344444444443333334445555555555543322 222 44455555555555555445555555666666666666
Q ss_pred cc-ccc-ccccccCCCCCccEEEecCC-CCCCC-CCccccCCC-CCcEEEccCcc--Cc--ccCcccccCCCCCEEEcCC
Q 003802 480 CR-NLV-SFPKNVCLMKSLKILCLCGC-LKLEK-LPQDLGEVE-CLEELDVGGTA--IR--QIPPSIVQLVNLKIFSLHG 550 (794)
Q Consensus 480 n~-~~~-~~~~~~~~l~~L~~L~L~~~-~~~~~-~~~~~~~l~-~L~~L~l~~~~--l~--~l~~~l~~l~~L~~L~l~~ 550 (794)
|. +.+ .++..+..+++|++|++++| .+.+. ++..+..++ +|++|++++|. ++ .+|..+..+++|++|++++
T Consensus 152 ~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~ 231 (336)
T 2ast_B 152 CSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSD 231 (336)
T ss_dssp CBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTT
T ss_pred CCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCC
Confidence 52 322 24444556666666666666 44432 344556666 67777776663 32 4555566677777777776
Q ss_pred CCCCCCccccccchhccccCCCCCCCccccCCCCCCCCCCCEEecCCCCCccCCCCccccCCCCCCeEeCCCCCCcc-Cc
Q 003802 551 CKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFS-LP 629 (794)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~-lp 629 (794)
|.... ......+..+++|+.|++++|..+.......+..+++|+.|++++| ++. .-
T Consensus 232 ~~~l~----------------------~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~ 288 (336)
T 2ast_B 232 SVMLK----------------------NDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTL 288 (336)
T ss_dssp CTTCC----------------------GGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCH
T ss_pred CCcCC----------------------HHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHH
Confidence 65211 0111234556777777777775232222235667788888888877 431 11
Q ss_pred hhhhccCCCCEEecCCCcCCCCCCC
Q 003802 630 SSINQLLKLKILCLEKCRNLKSLPE 654 (794)
Q Consensus 630 ~~l~~l~~L~~L~L~~n~~~~~~~~ 654 (794)
..+. .+|+.|++++|++.+..|.
T Consensus 289 ~~l~--~~l~~L~l~~n~l~~~~~~ 311 (336)
T 2ast_B 289 QLLK--EALPHLQINCSHFTTIARP 311 (336)
T ss_dssp HHHH--HHSTTSEESCCCSCCTTCS
T ss_pred HHHH--hhCcceEEecccCccccCC
Confidence 1221 1244445677776655553
No 90
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.79 E-value=1.8e-20 Score=200.96 Aligned_cols=231 Identities=16% Similarity=0.144 Sum_probs=151.8
Q ss_pred CCCceEEEcCCCCccc-----ccccccccccCceeccCCCcCcc---CCCC--------CCCCCCCCEEecccccccc--
Q 003802 399 PEKLFKLNLCNSRIKY-----LWKGIKPLKELKFMNLSHSCNLI---RTPD--------FTGVPNLERLNLEGCTRLL-- 460 (794)
Q Consensus 399 ~~~L~~L~L~~n~i~~-----l~~~~~~l~~L~~L~L~~n~~~~---~~~~--------~~~l~~L~~L~l~~~~~~~-- 460 (794)
+++|++|+|++|.++. ++..+..+++|++|+|++|.+.. ..|. +..+++|++|+|++|.+..
T Consensus 31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~ 110 (386)
T 2ca6_A 31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA 110 (386)
T ss_dssp CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHH
Confidence 4578888888887763 34456778888888888764332 2221 2567888888888877665
Q ss_pred --cccccccCccccccccccccccccccc----cccCCC---------CCccEEEecCCCCC-CCCC---ccccCCCCCc
Q 003802 461 --EVHQSVGTLKRLILLNLKDCRNLVSFP----KNVCLM---------KSLKILCLCGCLKL-EKLP---QDLGEVECLE 521 (794)
Q Consensus 461 --~~~~~~~~l~~L~~L~l~~n~~~~~~~----~~~~~l---------~~L~~L~L~~~~~~-~~~~---~~~~~l~~L~ 521 (794)
.+|..+..+++|++|++++|.+....+ ..+..+ ++|++|++++|.+. ..++ ..+..+++|+
T Consensus 111 ~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~ 190 (386)
T 2ca6_A 111 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH 190 (386)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCC
T ss_pred HHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcC
Confidence 366677778888888888877643322 233333 78888888887776 3333 3566777888
Q ss_pred EEEccCccCc------ccCcccccCCCCCEEEcCCCCCCCCccccccchhccccCCCCCCCccccC-CCCCCCCCCCEEe
Q 003802 522 ELDVGGTAIR------QIPPSIVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSF-PRFTGLSSLQTLD 594 (794)
Q Consensus 522 ~L~l~~~~l~------~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~L~~L~ 594 (794)
+|++++|.++ -+|..+..+++|+.|++++|...... ...+ ..+..+++|+.|+
T Consensus 191 ~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g--------------------~~~l~~~l~~~~~L~~L~ 250 (386)
T 2ca6_A 191 TVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLG--------------------SSALAIALKSWPNLRELG 250 (386)
T ss_dssp EEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHH--------------------HHHHHHHGGGCTTCCEEE
T ss_pred EEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHH--------------------HHHHHHHHccCCCcCEEE
Confidence 8888888777 23336677888888888877621000 0001 1245667788888
Q ss_pred cCCCCCccCC----CCccc--cCCCCCCeEeCCCCCCcc-----Cchhh-hccCCCCEEecCCCcCCC
Q 003802 595 LSDCNLLEGA----IPSDI--GSLFSLEAIDLSGNNFFS-----LPSSI-NQLLKLKILCLEKCRNLK 650 (794)
Q Consensus 595 l~~n~~~~~~----~~~~~--~~l~~L~~L~L~~n~l~~-----lp~~l-~~l~~L~~L~L~~n~~~~ 650 (794)
|++|. +++. ++..+ +.+++|+.|+|++|.++. +|..+ .++++|++|++++|++..
T Consensus 251 L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~ 317 (386)
T 2ca6_A 251 LNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 317 (386)
T ss_dssp CTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred CCCCC-CchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCc
Confidence 88887 3322 34455 337788888888888875 77666 567888888888887543
No 91
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.79 E-value=2.7e-18 Score=171.81 Aligned_cols=107 Identities=16% Similarity=0.155 Sum_probs=52.3
Q ss_pred ceEEEcCCCCcccccccccccccCceeccCCCcCccCCCC-CCCCCCCCEEecccccccccccccccCcccccccccccc
Q 003802 402 LFKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLIRTPD-FTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDC 480 (794)
Q Consensus 402 L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n 480 (794)
.++++++++.++.+|..+. ++|+.|++++|.+....+. |.++++|++|++++|.+.+.
T Consensus 16 ~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~------------------- 74 (251)
T 3m19_A 16 KKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTL------------------- 74 (251)
T ss_dssp GTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCC-------------------
T ss_pred CeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCcc-------------------
Confidence 3455555555555554433 3455555555544444333 44444555555544444433
Q ss_pred ccccccccccCCCCCccEEEecCCCCCCCCCccccCCCCCcEEEccCccCcccC
Q 003802 481 RNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIP 534 (794)
Q Consensus 481 ~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~ 534 (794)
.+..+..+++|++|++++|.+.+..+..|..+++|++|++++|.++.+|
T Consensus 75 -----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 123 (251)
T 3m19_A 75 -----SAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLP 123 (251)
T ss_dssp -----CTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred -----CHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcC
Confidence 3333444445555555554444444444455555555555555555444
No 92
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.78 E-value=1.2e-18 Score=173.07 Aligned_cols=194 Identities=13% Similarity=0.090 Sum_probs=114.4
Q ss_pred CCCEEecccccccccccccccCccccccccccccc-cccccccccCCCCCccEEEecC-CCCCCCCCccccCCCCCcEEE
Q 003802 447 NLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCR-NLVSFPKNVCLMKSLKILCLCG-CLKLEKLPQDLGEVECLEELD 524 (794)
Q Consensus 447 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L~L~~-~~~~~~~~~~~~~l~~L~~L~ 524 (794)
+|++|++++|.+.+..+..+.++++|++|++++|. +....+..+.++++|++|++++ |.+.+..+..|.++++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 45555555544443333345555555555555554 3222233455555555555555 444444444555666666666
Q ss_pred ccCccCcccCcccccCCCCC---EEEcCCC-CCCCCccccccchhccccCCCCCCCccccCCCCCCCCCCC-EEecCCCC
Q 003802 525 VGGTAIRQIPPSIVQLVNLK---IFSLHGC-KGQPPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQ-TLDLSDCN 599 (794)
Q Consensus 525 l~~~~l~~l~~~l~~l~~L~---~L~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~-~L~l~~n~ 599 (794)
+++|.++.+|. +..+++|+ +|++++| ... ......+.++++|+ .|++++|.
T Consensus 112 l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~-----------------------~i~~~~~~~l~~L~~~L~l~~n~ 167 (239)
T 2xwt_C 112 IFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMT-----------------------SIPVNAFQGLCNETLTLKLYNNG 167 (239)
T ss_dssp EEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCC-----------------------EECTTTTTTTBSSEEEEECCSCC
T ss_pred CCCCCCccccc-cccccccccccEEECCCCcchh-----------------------hcCcccccchhcceeEEEcCCCC
Confidence 66666666554 55555555 6666666 311 01112367788888 99999988
Q ss_pred CccCCCCccccCCCCCCeEeCCCCC-CccCch-hhhcc-CCCCEEecCCCcCCCCCCC-CCccccccccccc
Q 003802 600 LLEGAIPSDIGSLFSLEAIDLSGNN-FFSLPS-SINQL-LKLKILCLEKCRNLKSLPE-LPPEIVFVGAEDC 667 (794)
Q Consensus 600 ~~~~~~~~~~~~l~~L~~L~L~~n~-l~~lp~-~l~~l-~~L~~L~L~~n~~~~~~~~-~~~~L~~L~l~~~ 667 (794)
+. .+|......++|++|++++|. ++.+|. .+..+ ++|+.|++++|++. .+|. ..++|+.|.+.++
T Consensus 168 l~--~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 168 FT--SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSKGLEHLKELIARNT 236 (239)
T ss_dssp CC--EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCTTCTTCSEEECTTC
T ss_pred Cc--ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc-cCChhHhccCceeeccCc
Confidence 43 255443334899999999994 998854 57888 99999999999854 3432 2344444444443
No 93
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.78 E-value=9.3e-21 Score=203.13 Aligned_cols=229 Identities=14% Similarity=0.069 Sum_probs=162.9
Q ss_pred CceEEEcCCCCcccccccccccccCceeccCCCcCccCCC-----CCCCCCCCCEEeccccc---ccccccccc------
Q 003802 401 KLFKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLIRTP-----DFTGVPNLERLNLEGCT---RLLEVHQSV------ 466 (794)
Q Consensus 401 ~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~n~~~~~~~-----~~~~l~~L~~L~l~~~~---~~~~~~~~~------ 466 (794)
.|+...+....+..++..+..+++|++|+|++|.+....+ .+..+++|++|+|++|. +.+.+|..+
T Consensus 10 ~L~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~ 89 (386)
T 2ca6_A 10 SLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQA 89 (386)
T ss_dssp CCEESSCCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHH
T ss_pred ccccCCCCHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHH
Confidence 4444555566677788888899999999999998765422 37789999999999863 334445444
Q ss_pred -cCcccccccccccccccc----ccccccCCCCCccEEEecCCCCCCCCCc----cccCC---------CCCcEEEccCc
Q 003802 467 -GTLKRLILLNLKDCRNLV----SFPKNVCLMKSLKILCLCGCLKLEKLPQ----DLGEV---------ECLEELDVGGT 528 (794)
Q Consensus 467 -~~l~~L~~L~l~~n~~~~----~~~~~~~~l~~L~~L~L~~~~~~~~~~~----~~~~l---------~~L~~L~l~~~ 528 (794)
..+++|++|++++|.+.. .+|..+..+++|++|+|++|.+....+. .+..+ ++|++|++++|
T Consensus 90 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n 169 (386)
T 2ca6_A 90 LLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN 169 (386)
T ss_dssp HTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS
T ss_pred HhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCC
Confidence 678899999999988766 4777788889999999999887543332 23334 88999999998
Q ss_pred cCc--ccC---cccccCCCCCEEEcCCCCCCCCccccccchhccccCCCCCCCccccCC-CCCCCCCCCEEecCCCCCcc
Q 003802 529 AIR--QIP---PSIVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFP-RFTGLSSLQTLDLSDCNLLE 602 (794)
Q Consensus 529 ~l~--~l~---~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~~L~l~~n~~~~ 602 (794)
.++ .+| ..+..+++|++|++++|....... ....+ .+..+++|+.|+|++|.+..
T Consensus 170 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~-------------------~~l~~~~l~~~~~L~~L~Ls~n~l~~ 230 (386)
T 2ca6_A 170 RLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGI-------------------EHLLLEGLAYCQELKVLDLQDNTFTH 230 (386)
T ss_dssp CCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHH-------------------HHHHHTTGGGCTTCCEEECCSSCCHH
T ss_pred CCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHH-------------------HHHHHHHhhcCCCccEEECcCCCCCc
Confidence 886 444 456678888888888886320000 00012 45677888888888888421
Q ss_pred ---CCCCccccCCCCCCeEeCCCCCCcc-----Cchhhhc--cCCCCEEecCCCcC
Q 003802 603 ---GAIPSDIGSLFSLEAIDLSGNNFFS-----LPSSINQ--LLKLKILCLEKCRN 648 (794)
Q Consensus 603 ---~~~~~~~~~l~~L~~L~L~~n~l~~-----lp~~l~~--l~~L~~L~L~~n~~ 648 (794)
..+|..+..+++|++|+|++|.++. +|..+.. +++|++|+|++|++
T Consensus 231 ~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i 286 (386)
T 2ca6_A 231 LGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEI 286 (386)
T ss_dssp HHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCC
T ss_pred HHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcC
Confidence 3466777888888888888888873 4556643 88888888888874
No 94
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.78 E-value=2.7e-18 Score=180.89 Aligned_cols=224 Identities=20% Similarity=0.124 Sum_probs=156.6
Q ss_pred eEEEcCCCCcccccccccccccCceeccCCCcCccCCCC-CCCCCCCCEEeccccccccccc-ccccCcccccc-ccccc
Q 003802 403 FKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLIRTPD-FTGVPNLERLNLEGCTRLLEVH-QSVGTLKRLIL-LNLKD 479 (794)
Q Consensus 403 ~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~-L~l~~ 479 (794)
++++.++++++++|..+ .+++++|+|++|.+...++. |.++++|++|+|++|.+.+.+| ..|.++++|++ +.+++
T Consensus 12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp TEEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred CEEEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 56888899999999876 36899999999988877775 8899999999999998777665 45778888775 45555
Q ss_pred cccccccccccCCCCCccEEEecCCCCCCCCCccccCCCCCcEEEccC-ccCcccCcc-cccC-CCCCEEEcCCCCCCCC
Q 003802 480 CRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGG-TAIRQIPPS-IVQL-VNLKIFSLHGCKGQPP 556 (794)
Q Consensus 480 n~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~-~~l~~l~~~-l~~l-~~L~~L~l~~~~~~~~ 556 (794)
|.+....|..+..+++|++|++++|.+....+..+....++..|++.+ +.+..++.. +..+ ..++.|++++|....
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~- 168 (350)
T 4ay9_X 90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE- 168 (350)
T ss_dssp TTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE-
T ss_pred CcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC-
Confidence 666666677788889999999988888776666666777788888865 567766542 3333 357777777776210
Q ss_pred ccccccchhccccCCCCCCCccccCCCCCCCCCCCEEecCCCCCccCCCCccccCCCCCCeEeCCCCCCccCchhhhccC
Q 003802 557 KILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLPSSINQLL 636 (794)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~ 636 (794)
.. +......+|++|++++|+.++...+..|..+++|++|+|++|+|+.+|. ..+.
T Consensus 169 ----------------------i~-~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~--~~~~ 223 (350)
T 4ay9_X 169 ----------------------IH-NSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS--YGLE 223 (350)
T ss_dssp ----------------------EC-TTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCS--SSCT
T ss_pred ----------------------CC-hhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccCh--hhhc
Confidence 00 1122335677777775443443334456777777777777777777775 3356
Q ss_pred CCCEEecCCCcCCCCCCC
Q 003802 637 KLKILCLEKCRNLKSLPE 654 (794)
Q Consensus 637 ~L~~L~L~~n~~~~~~~~ 654 (794)
+|+.|.+.+|..++.+|.
T Consensus 224 ~L~~L~~l~~~~l~~lP~ 241 (350)
T 4ay9_X 224 NLKKLRARSTYNLKKLPT 241 (350)
T ss_dssp TCCEEECTTCTTCCCCCC
T ss_pred cchHhhhccCCCcCcCCC
Confidence 677777776666666653
No 95
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.77 E-value=4.8e-18 Score=169.97 Aligned_cols=173 Identities=17% Similarity=0.157 Sum_probs=148.9
Q ss_pred CcceeeeecCCCCCCCCCCCCCCceEEEcCCCCcccccc-cccccccCceeccCCCcCccCCCC-CCCCCCCCEEecccc
Q 003802 379 NLRYLKWHEYPFNSLPVSFRPEKLFKLNLCNSRIKYLWK-GIKPLKELKFMNLSHSCNLIRTPD-FTGVPNLERLNLEGC 456 (794)
Q Consensus 379 ~l~~L~~~~~~~~~l~~~~~~~~L~~L~L~~n~i~~l~~-~~~~l~~L~~L~L~~n~~~~~~~~-~~~l~~L~~L~l~~~ 456 (794)
..+.+++.++.+..+|..++ .++++|++++|.++.++. .+.++++|++|++++|.+....+. |..+++|++|++++|
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~-~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 93 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP-ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN 93 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC-TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CCeEEecCCCCccccCCCCC-CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC
Confidence 34566677777777777664 689999999999998865 589999999999999998887776 889999999999999
Q ss_pred cccccccccccCccccccccccccccccccccccCCCCCccEEEecCCCCCCCCCccccCCCCCcEEEccCccCcccCc-
Q 003802 457 TRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPP- 535 (794)
Q Consensus 457 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~- 535 (794)
.+....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..|+.+++|++|++++|.++.+|.
T Consensus 94 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 173 (251)
T 3m19_A 94 QLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHG 173 (251)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred cccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHH
Confidence 9887777788999999999999998776666667889999999999998887777789999999999999999998775
Q ss_pred ccccCCCCCEEEcCCCC
Q 003802 536 SIVQLVNLKIFSLHGCK 552 (794)
Q Consensus 536 ~l~~l~~L~~L~l~~~~ 552 (794)
.+..+++|+.|++++|.
T Consensus 174 ~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 174 AFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp TTTTCTTCCEEECCSCC
T ss_pred HHhCCCCCCEEEeeCCc
Confidence 67889999999999998
No 96
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.76 E-value=9.5e-20 Score=193.13 Aligned_cols=229 Identities=14% Similarity=0.092 Sum_probs=146.2
Q ss_pred CCceEEEcCCCCccccc-----ccccccc-cCceeccCCCcCccCCCC-CCCC-----CCCCEEeccccccccccccccc
Q 003802 400 EKLFKLNLCNSRIKYLW-----KGIKPLK-ELKFMNLSHSCNLIRTPD-FTGV-----PNLERLNLEGCTRLLEVHQSVG 467 (794)
Q Consensus 400 ~~L~~L~L~~n~i~~l~-----~~~~~l~-~L~~L~L~~n~~~~~~~~-~~~l-----~~L~~L~l~~~~~~~~~~~~~~ 467 (794)
.+|++|++++|.++..+ ..+..++ +|++|+|++|.+....+. +..+ ++|++|++++|.+....+..+.
T Consensus 22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~ 101 (362)
T 3goz_A 22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELV 101 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHH
Confidence 35888888888887665 4567777 788888888877665443 4332 7888888888877666555433
Q ss_pred C----c-cccccccccccccccccccc----cCC-CCCccEEEecCCCCCCCC----CccccCCC-CCcEEEccCccCcc
Q 003802 468 T----L-KRLILLNLKDCRNLVSFPKN----VCL-MKSLKILCLCGCLKLEKL----PQDLGEVE-CLEELDVGGTAIRQ 532 (794)
Q Consensus 468 ~----l-~~L~~L~l~~n~~~~~~~~~----~~~-l~~L~~L~L~~~~~~~~~----~~~~~~l~-~L~~L~l~~~~l~~ 532 (794)
. + ++|++|++++|.+....+.. +.. .++|++|++++|.+.... +..+..++ +|++|++++|.++.
T Consensus 102 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~ 181 (362)
T 3goz_A 102 KTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLAS 181 (362)
T ss_dssp HHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred HHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCch
Confidence 3 3 78888888888765554433 333 358888888888776432 33344554 78888888888874
Q ss_pred cCc-----ccccC-CCCCEEEcCCCCCCCCccccccchhccccCCCCCCCccccCC-CCCC-CCCCCEEecCCCCCccCC
Q 003802 533 IPP-----SIVQL-VNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFP-RFTG-LSSLQTLDLSDCNLLEGA 604 (794)
Q Consensus 533 l~~-----~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~L~~L~l~~n~~~~~~ 604 (794)
... .+..+ ++|++|++++|...... ...++ .+.. .++|++|++++|. +++.
T Consensus 182 ~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~--------------------~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~ 240 (362)
T 3goz_A 182 KNCAELAKFLASIPASVTSLDLSANLLGLKS--------------------YAELAYIFSSIPNHVVSLNLCLNC-LHGP 240 (362)
T ss_dssp SCHHHHHHHHHTSCTTCCEEECTTSCGGGSC--------------------HHHHHHHHHHSCTTCCEEECCSSC-CCCC
T ss_pred hhHHHHHHHHHhCCCCCCEEECCCCCCChhH--------------------HHHHHHHHhcCCCCceEEECcCCC-CCcH
Confidence 432 34445 48888888887621100 00000 1222 3578888888887 3332
Q ss_pred CC----ccccCCCCCCeEeCCCCCCccC--------chhhhccCCCCEEecCCCcCC
Q 003802 605 IP----SDIGSLFSLEAIDLSGNNFFSL--------PSSINQLLKLKILCLEKCRNL 649 (794)
Q Consensus 605 ~~----~~~~~l~~L~~L~L~~n~l~~l--------p~~l~~l~~L~~L~L~~n~~~ 649 (794)
.+ ..+..+++|+.|+|++|.+..+ +..+..+++|+.|++++|++.
T Consensus 241 ~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~ 297 (362)
T 3goz_A 241 SLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH 297 (362)
T ss_dssp CHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCC
T ss_pred HHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCC
Confidence 22 3346677888888888874433 334556777888888888743
No 97
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.76 E-value=1e-18 Score=180.98 Aligned_cols=203 Identities=15% Similarity=0.115 Sum_probs=128.4
Q ss_pred cCceeccCCCcCccC----CCCCCCCCCCCEEecccccccccccccc--cCccccccccccccccccccc----cccCCC
Q 003802 424 ELKFMNLSHSCNLIR----TPDFTGVPNLERLNLEGCTRLLEVHQSV--GTLKRLILLNLKDCRNLVSFP----KNVCLM 493 (794)
Q Consensus 424 ~L~~L~L~~n~~~~~----~~~~~~l~~L~~L~l~~~~~~~~~~~~~--~~l~~L~~L~l~~n~~~~~~~----~~~~~l 493 (794)
.++.+.+.++.+... ...+..+++|++|++++|.+.+..|..+ ..+++|++|++++|.+.+..+ ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 456666666544221 0112234568888888887777777776 778888888888877665443 334567
Q ss_pred CCccEEEecCCCCCCCCCccccCCCCCcEEEccCccCcc---cC--cccccCCCCCEEEcCCCCCCCCccccccchhccc
Q 003802 494 KSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQ---IP--PSIVQLVNLKIFSLHGCKGQPPKILSSNFFLSLL 568 (794)
Q Consensus 494 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~---l~--~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 568 (794)
++|++|++++|.+.+..+..++.+++|++|++++|++.. ++ ..+..+++|++|++++|........
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~--------- 215 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGV--------- 215 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHH---------
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHH---------
Confidence 788888888887777777777788888888888887652 22 2235677777777777763110000
Q ss_pred cCCCCCCCccccCCCCCCCCCCCEEecCCCCCccCCCCccccCC---CCCCeEeCCCCCCccCchhhhccCCCCEEecCC
Q 003802 569 LPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSL---FSLEAIDLSGNNFFSLPSSINQLLKLKILCLEK 645 (794)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l---~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~ 645 (794)
....+..+++|++|++++|. +++..|..+..+ ++|++|+|++|+++.+|..+. ++|++|+|++
T Consensus 216 -----------~~~l~~~l~~L~~L~Ls~N~-l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~ 281 (310)
T 4glp_A 216 -----------CAALAAAGVQPHSLDLSHNS-LRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSS 281 (310)
T ss_dssp -----------HHHHHHHTCCCSSEECTTSC-CCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCS
T ss_pred -----------HHHHHhcCCCCCEEECCCCC-CCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCC
Confidence 00002445677777777777 444445555554 577777777777777776553 6777777777
Q ss_pred CcCC
Q 003802 646 CRNL 649 (794)
Q Consensus 646 n~~~ 649 (794)
|++.
T Consensus 282 N~l~ 285 (310)
T 4glp_A 282 NRLN 285 (310)
T ss_dssp CCCC
T ss_pred CcCC
Confidence 7633
No 98
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.76 E-value=4.2e-21 Score=218.98 Aligned_cols=287 Identities=15% Similarity=0.101 Sum_probs=135.8
Q ss_pred hccCCCCcEEEEcCcccCCCccc----cccCcceeeeecCC-CCC--CCCCC-CCCCceEEEcCCCCccc-----ccccc
Q 003802 353 FSTMSNLRLLEINNLYSSGNLEY----LSNNLRYLKWHEYP-FNS--LPVSF-RPEKLFKLNLCNSRIKY-----LWKGI 419 (794)
Q Consensus 353 ~~~~~~L~~L~l~~n~~~~~~~~----~~~~l~~L~~~~~~-~~~--l~~~~-~~~~L~~L~L~~n~i~~-----l~~~~ 419 (794)
+..+++|++|++++|.+++..+. .+.+|+.|++.+|. +.. ++... .+++|++|++++|.++. ++...
T Consensus 101 ~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~ 180 (594)
T 2p1m_B 101 SSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFP 180 (594)
T ss_dssp HHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSC
T ss_pred HHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHh
Confidence 34667777777777766543322 23566666666652 211 11111 35677777777776553 22223
Q ss_pred cccccCceeccCCCcCccCC----CC-CCCCCCCCEEecccccccccccccccCcccccccccccccc------cccccc
Q 003802 420 KPLKELKFMNLSHSCNLIRT----PD-FTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRN------LVSFPK 488 (794)
Q Consensus 420 ~~l~~L~~L~L~~n~~~~~~----~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~------~~~~~~ 488 (794)
..+++|++|++++|. .... .. +..+++|++|++++|...+.++..+..+++|++|+++.+.. ...++.
T Consensus 181 ~~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~ 259 (594)
T 2p1m_B 181 DTYTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSV 259 (594)
T ss_dssp TTCCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHH
T ss_pred hcCCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHH
Confidence 356677777777764 1111 11 23357777777777744444666666667777776544321 111222
Q ss_pred ccCCCCCccEE-EecCCCCCCCCCccccCCCCCcEEEccCccCcc--cCcccccCCCCCEEEcCCCCCCCCcccc----c
Q 003802 489 NVCLMKSLKIL-CLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQ--IPPSIVQLVNLKIFSLHGCKGQPPKILS----S 561 (794)
Q Consensus 489 ~~~~l~~L~~L-~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~--l~~~l~~l~~L~~L~l~~~~~~~~~~~~----~ 561 (794)
.+.++++|+.| .+.+. ....++..+..+++|++|++++|.++. ++..+..+++|++|++++|.. ...+. .
T Consensus 260 ~l~~~~~L~~Ls~~~~~-~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~--~~~l~~l~~~ 336 (594)
T 2p1m_B 260 ALSGCKELRCLSGFWDA-VPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIE--DAGLEVLAST 336 (594)
T ss_dssp HHHTCTTCCEEECCBTC-CGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGH--HHHHHHHHHH
T ss_pred HHhcCCCcccccCCccc-chhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccC--HHHHHHHHHh
Confidence 33444444444 12111 111222223344445555555444331 222233444455555444310 00000 0
Q ss_pred cchhccccC---------CCCCCCccccCCCC-CCCCCCCEEecCCCCCccCCCCcccc-CCCCCCeEeCC--C----CC
Q 003802 562 NFFLSLLLP---------NKNSDSMCLSFPRF-TGLSSLQTLDLSDCNLLEGAIPSDIG-SLFSLEAIDLS--G----NN 624 (794)
Q Consensus 562 ~~~~~~~~~---------~~~~~~~~~~~~~~-~~~~~L~~L~l~~n~~~~~~~~~~~~-~l~~L~~L~L~--~----n~ 624 (794)
+..+..+.+ ..+... ...+..+ .++++|+.|.++.|. +++..+..+. .+++|+.|+++ + +.
T Consensus 337 ~~~L~~L~L~~~~~~g~~~~~~l~-~~~l~~l~~~~~~L~~L~~~~~~-l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~ 414 (594)
T 2p1m_B 337 CKDLRELRVFPSEPFVMEPNVALT-EQGLVSVSMGCPKLESVLYFCRQ-MTNAALITIARNRPNMTRFRLCIIEPKAPDY 414 (594)
T ss_dssp CTTCCEEEEECSCTTCSSCSSCCC-HHHHHHHHHHCTTCCEEEEEESC-CCHHHHHHHHHHCTTCCEEEEEESSTTCCCT
T ss_pred CCCCCEEEEecCcccccccCCCCC-HHHHHHHHHhchhHHHHHHhcCC-cCHHHHHHHHhhCCCcceeEeecccCCCccc
Confidence 000000000 000000 0111111 236778888776666 3333333333 57788888887 3 45
Q ss_pred CccCc------hhhhccCCCCEEecCC
Q 003802 625 FFSLP------SSINQLLKLKILCLEK 645 (794)
Q Consensus 625 l~~lp------~~l~~l~~L~~L~L~~ 645 (794)
++..| ..+..+++|+.|+|++
T Consensus 415 l~~~~~~~~~~~l~~~~~~L~~L~L~~ 441 (594)
T 2p1m_B 415 LTLEPLDIGFGAIVEHCKDLRRLSLSG 441 (594)
T ss_dssp TTCCCTHHHHHHHHHHCTTCCEEECCS
T ss_pred ccCCchhhHHHHHHhhCCCccEEeecC
Confidence 55333 2256677888888865
No 99
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.76 E-value=4.2e-20 Score=195.84 Aligned_cols=223 Identities=15% Similarity=0.142 Sum_probs=130.8
Q ss_pred EEEcCCCCccccccc-ccccccCceeccCCCcCccCCC----C-CCCCC-CCCEEecccccccccccccccCc-----cc
Q 003802 404 KLNLCNSRIKYLWKG-IKPLKELKFMNLSHSCNLIRTP----D-FTGVP-NLERLNLEGCTRLLEVHQSVGTL-----KR 471 (794)
Q Consensus 404 ~L~L~~n~i~~l~~~-~~~l~~L~~L~L~~n~~~~~~~----~-~~~l~-~L~~L~l~~~~~~~~~~~~~~~l-----~~ 471 (794)
+++++.|.++..... +...++|++|++++|.+....+ . +..++ +|++|++++|.+....+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 457788888855444 4455558899998888766654 3 66677 78888888887776666666654 77
Q ss_pred ccccccccccccccccccc----CCC-CCccEEEecCCCCCCCCCccc----cC-CCCCcEEEccCccCc-----ccCcc
Q 003802 472 LILLNLKDCRNLVSFPKNV----CLM-KSLKILCLCGCLKLEKLPQDL----GE-VECLEELDVGGTAIR-----QIPPS 536 (794)
Q Consensus 472 L~~L~l~~n~~~~~~~~~~----~~l-~~L~~L~L~~~~~~~~~~~~~----~~-l~~L~~L~l~~~~l~-----~l~~~ 536 (794)
|++|++++|.+....+..+ ..+ ++|++|++++|.+....+..+ .. .++|++|++++|.++ .++..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 8888888877665554433 333 678888888877665544333 23 257777777777776 33344
Q ss_pred cccCC-CCCEEEcCCCCCCCCccccccchhccccCCCCCCCccccC-CCCCCC-CCCCEEecCCCCCccCC----CCccc
Q 003802 537 IVQLV-NLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSF-PRFTGL-SSLQTLDLSDCNLLEGA----IPSDI 609 (794)
Q Consensus 537 l~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~L~~L~l~~n~~~~~~----~~~~~ 609 (794)
+..++ +|++|++++|...... ...+ ..+..+ ++|++|+|++|. +++. ++..+
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~--------------------~~~l~~~l~~~~~~L~~L~Ls~N~-i~~~~~~~l~~~l 220 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKN--------------------CAELAKFLASIPASVTSLDLSANL-LGLKSYAELAYIF 220 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSC--------------------HHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHH
T ss_pred HhcCCccccEeeecCCCCchhh--------------------HHHHHHHHHhCCCCCCEEECCCCC-CChhHHHHHHHHH
Confidence 44444 6666666666511000 0000 012223 366666666666 3321 22233
Q ss_pred cC-CCCCCeEeCCCCCCccCch-----hhhccCCCCEEecCCCc
Q 003802 610 GS-LFSLEAIDLSGNNFFSLPS-----SINQLLKLKILCLEKCR 647 (794)
Q Consensus 610 ~~-l~~L~~L~L~~n~l~~lp~-----~l~~l~~L~~L~L~~n~ 647 (794)
.. .++|++|+|++|.++..+. .+..+++|++|+|++|.
T Consensus 221 ~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 221 SSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDI 264 (362)
T ss_dssp HHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred hcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCC
Confidence 33 3466666666666654322 22445666666666664
No 100
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.74 E-value=2.1e-17 Score=182.84 Aligned_cols=132 Identities=15% Similarity=0.180 Sum_probs=65.5
Q ss_pred CceEEEcCCCCcccccccccccccCceeccCCCcCccCCCCCCCCCCCCEEecccccccccccccccCcccccccccccc
Q 003802 401 KLFKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDC 480 (794)
Q Consensus 401 ~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n 480 (794)
+|++|++++|.++.+|..+ +++|++|+|++|.+... | ..+++|++|++++|.+.+ +|. +.. +|++|++++|
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~l~~i-p--~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N 130 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL--PPQITVLEITQNALISL-P--ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNN 130 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC--CTTCSEEECCSSCCSCC-C--CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSS
T ss_pred CccEEEeCCCCCCccCHhH--cCCCCEEECcCCCCccc-c--cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCC
Confidence 4555555555555555443 24555555555554422 2 334555555555554443 443 332 5555555555
Q ss_pred ccccccccccCCCCCccEEEecCCCCCCCCCccccCCCCCcEEEccCccCcccCcccccCCCCCEEEcCCCC
Q 003802 481 RNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPPSIVQLVNLKIFSLHGCK 552 (794)
Q Consensus 481 ~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~ 552 (794)
.+.+ +|. .+++|++|++++|.+.+ +|. .+++|+.|++++|.++.+|. +. ++|+.|++++|.
T Consensus 131 ~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~ 191 (571)
T 3cvr_A 131 QLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNL 191 (571)
T ss_dssp CCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSC
T ss_pred cCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCC
Confidence 4433 443 34555555555555443 333 34555555555555555554 33 455555555544
No 101
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.74 E-value=1.6e-20 Score=214.13 Aligned_cols=376 Identities=16% Similarity=0.088 Sum_probs=198.9
Q ss_pred CeEEEEEecCCcccccchhhhc-cCCCCcEEEEcCc-ccCCC-cc---ccccCcceeeeecCCCCCC-----CCCC-CCC
Q 003802 333 DAVEAIIVDVPEMTELEAKSFS-TMSNLRLLEINNL-YSSGN-LE---YLSNNLRYLKWHEYPFNSL-----PVSF-RPE 400 (794)
Q Consensus 333 ~~~~~l~l~~~~~~~~~~~~~~-~~~~L~~L~l~~n-~~~~~-~~---~~~~~l~~L~~~~~~~~~l-----~~~~-~~~ 400 (794)
..++.+.++.+.+.......+. .+++|++|++++| .+... ++ ....+|+.|++.++.+... +... .++
T Consensus 105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~ 184 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYT 184 (594)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCC
T ss_pred CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCC
Confidence 3556666666655544444443 5677777777766 33221 11 1234666666665553321 1111 455
Q ss_pred CceEEEcCCCC--cc--cccccccccccCceeccCCCcCccCCCC-CCCCCCCCEEecccccc------cccccccccCc
Q 003802 401 KLFKLNLCNSR--IK--YLWKGIKPLKELKFMNLSHSCNLIRTPD-FTGVPNLERLNLEGCTR------LLEVHQSVGTL 469 (794)
Q Consensus 401 ~L~~L~L~~n~--i~--~l~~~~~~l~~L~~L~L~~n~~~~~~~~-~~~l~~L~~L~l~~~~~------~~~~~~~~~~l 469 (794)
+|++|++++|. +. .++.-+..+++|++|++++|......+. +..+++|+.|+++.+.. ...++..+.++
T Consensus 185 ~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~ 264 (594)
T 2p1m_B 185 SLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGC 264 (594)
T ss_dssp CCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTC
T ss_pred cCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcC
Confidence 77888887775 21 2222234567788888877743333333 55667777777655421 12233455666
Q ss_pred cccccc-cccccccccccccccCCCCCccEEEecCCCCCCC-CCccccCCCCCcEEEccCccCc--ccCcccccCCCCCE
Q 003802 470 KRLILL-NLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEK-LPQDLGEVECLEELDVGGTAIR--QIPPSIVQLVNLKI 545 (794)
Q Consensus 470 ~~L~~L-~l~~n~~~~~~~~~~~~l~~L~~L~L~~~~~~~~-~~~~~~~l~~L~~L~l~~~~l~--~l~~~l~~l~~L~~ 545 (794)
++|+.| .+.+.. ...++..+..+++|++|++++|.+... ++..+..+++|++|++++| ++ .++.....+++|++
T Consensus 265 ~~L~~Ls~~~~~~-~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~ 342 (594)
T 2p1m_B 265 KELRCLSGFWDAV-PAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRE 342 (594)
T ss_dssp TTCCEEECCBTCC-GGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCE
T ss_pred CCcccccCCcccc-hhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCE
Confidence 666666 333321 233444444566666666666663322 1122445666666666665 33 22222334666666
Q ss_pred EEcCCC--------CCCCCccc----cccchhccccCCCCCCCccccCCCC-CCCCCCCEEecC-----CCCCccC----
Q 003802 546 FSLHGC--------KGQPPKIL----SSNFFLSLLLPNKNSDSMCLSFPRF-TGLSSLQTLDLS-----DCNLLEG---- 603 (794)
Q Consensus 546 L~l~~~--------~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~~L~l~-----~n~~~~~---- 603 (794)
|++.++ .......+ .....+..+....+... ...+..+ ..+++|+.|+++ +|..+++
T Consensus 343 L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~-~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~ 421 (594)
T 2p1m_B 343 LRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMT-NAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLD 421 (594)
T ss_dssp EEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCC-HHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTH
T ss_pred EEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcC-HHHHHHHHhhCCCcceeEeecccCCCcccccCCchh
Confidence 666332 11000000 00111111111111111 1111112 247899999999 3332331
Q ss_pred -CCCccccCCCCCCeEeCCCCCCc-cCchhhhc-cCCCCEEecCCCcCCCCCCCCCcccccccccccccccccccccccc
Q 003802 604 -AIPSDIGSLFSLEAIDLSGNNFF-SLPSSINQ-LLKLKILCLEKCRNLKSLPELPPEIVFVGAEDCTSLETISAFAKLS 680 (794)
Q Consensus 604 -~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~-l~~L~~L~L~~n~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~n~~ 680 (794)
.++..+..+++|+.|+|++ .++ ..+..+.. +++|+.|+|++|.+.... +..+ ..+|++|+.|++.+|..
T Consensus 422 ~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~------~~~l-~~~~~~L~~L~L~~n~~ 493 (594)
T 2p1m_B 422 IGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLG------MHHV-LSGCDSLRKLEIRDCPF 493 (594)
T ss_dssp HHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHH------HHHH-HHHCTTCCEEEEESCSC
T ss_pred hHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHH------HHHH-HhcCCCcCEEECcCCCC
Confidence 1222367789999999987 566 33334544 899999999999843211 1110 14577777777776632
Q ss_pred CCCCc-eEEEeCCCCchhhhhhhhhHHHHHHHHHHhhhccc
Q 003802 681 RSPNI-ALNFLNCFKLVEDQVSKDNLAVTLMKQWLLSYHSL 720 (794)
Q Consensus 681 ~~~~~-~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~~~~~l 720 (794)
.... ...+..|++|++|++++|+++......+...++.+
T Consensus 494 -~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l 533 (594)
T 2p1m_B 494 -GDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKL 533 (594)
T ss_dssp -CHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTE
T ss_pred -cHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCC
Confidence 2111 11335689999999999999766666655555544
No 102
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.72 E-value=2.5e-17 Score=159.63 Aligned_cols=147 Identities=16% Similarity=0.136 Sum_probs=96.0
Q ss_pred EEEcCCCCcccccccccccccCceeccCCCcCccCCCC-CCCCCCCCEEecccccccccccccccCcccccccccccccc
Q 003802 404 KLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLIRTPD-FTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRN 482 (794)
Q Consensus 404 ~L~L~~n~i~~l~~~~~~l~~L~~L~L~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~ 482 (794)
.++.+++.++.+|..+ .++|++|++++|.+...++. |..+++|++|++++|.+....+..+..+++|++|++++|.+
T Consensus 11 ~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 88 (208)
T 2o6s_A 11 TVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL 88 (208)
T ss_dssp EEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcC
Confidence 4556666666666543 34677777777766655554 56677777777777666544444566677777777777665
Q ss_pred ccccccccCCCCCccEEEecCCCCCCCCCccccCCCCCcEEEccCccCcccCcc-cccCCCCCEEEcCCCC
Q 003802 483 LVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPPS-IVQLVNLKIFSLHGCK 552 (794)
Q Consensus 483 ~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~-l~~l~~L~~L~l~~~~ 552 (794)
.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.++.+|.. +..+++|+.|++++|.
T Consensus 89 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 89 QSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 159 (208)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred CccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCC
Confidence 544445566777777777777776665555567777777777777777766553 4556666666666653
No 103
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.72 E-value=4.6e-17 Score=180.07 Aligned_cols=175 Identities=20% Similarity=0.224 Sum_probs=140.1
Q ss_pred CCcEEEEcCcccCCCccccccCcceeeeecCCCCCCCCCCCCCCceEEEcCCCCcccccccccccccCceeccCCCcCcc
Q 003802 358 NLRLLEINNLYSSGNLEYLSNNLRYLKWHEYPFNSLPVSFRPEKLFKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLI 437 (794)
Q Consensus 358 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~~~~~~~~l~~~~~~~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~n~~~~ 437 (794)
+|+.|++++|.+.+..+..+.+++.|++.+|.+..+| ..+++|++|++++|.++.+|. +.+ +|++|++++|.+..
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~l~~ 134 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLPPQITVLEITQNALISLP--ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQLTM 134 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCCTTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSSCCSC
T ss_pred CccEEEeCCCCCCccCHhHcCCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCCcCCC
Confidence 7888888888877744446678888888888888888 346789999999999998887 655 89999999998777
Q ss_pred CCCCCCCCCCCCEEecccccccccccccccCccccccccccccccccccccccCCCCCccEEEecCCCCCCCCCccccCC
Q 003802 438 RTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEV 517 (794)
Q Consensus 438 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l 517 (794)
.++ .+++|+.|++++|.+.+ +|. .+++|++|++++|.+.+ +|. +. ++|++|+|++|.+. .+|. +..
T Consensus 135 lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~- 200 (571)
T 3cvr_A 135 LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV- 200 (571)
T ss_dssp CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC--
T ss_pred CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH-
Confidence 444 68899999999988765 555 57889999999988655 776 55 89999999998877 5665 554
Q ss_pred CCC-------cEEEccCccCcccCcccccCCCCCEEEcCCCC
Q 003802 518 ECL-------EELDVGGTAIRQIPPSIVQLVNLKIFSLHGCK 552 (794)
Q Consensus 518 ~~L-------~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~ 552 (794)
+| +.|++++|.++.+|..+..+++|+.|++++|.
T Consensus 201 -~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~ 241 (571)
T 3cvr_A 201 -RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNP 241 (571)
T ss_dssp --------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSS
T ss_pred -hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCc
Confidence 67 99999999999999988889999999999987
No 104
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.71 E-value=2.8e-17 Score=157.54 Aligned_cols=150 Identities=17% Similarity=0.189 Sum_probs=128.5
Q ss_pred CCCceEEEcCCCCcccccccccccccCceeccCCCcCccCCCCCCCCCCCCEEecccccccccccccccCcccccccccc
Q 003802 399 PEKLFKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLK 478 (794)
Q Consensus 399 ~~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 478 (794)
+++|++|++++|.++.+| .+..+++|++|++++|. ...++.+..+++|++|++++|.+.+..+..+..+++|++|+++
T Consensus 43 l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls 120 (197)
T 4ezg_A 43 MNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIH-ATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS 120 (197)
T ss_dssp HHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCC-CSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECC
T ss_pred cCCccEEeccCCCccChH-HHhcCCCCCEEEccCCC-CCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEec
Confidence 447888888888888887 68889999999999984 3445568889999999999998887788889999999999999
Q ss_pred ccccccccccccCCCCCccEEEecCCCCCCCCCccccCCCCCcEEEccCccCcccCcccccCCCCCEEEcCCCC
Q 003802 479 DCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPPSIVQLVNLKIFSLHGCK 552 (794)
Q Consensus 479 ~n~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~ 552 (794)
+|.+.+..|..++.+++|++|++++|...+.+| .+..+++|+.|++++|.++.++ .+..+++|+.|++++|.
T Consensus 121 ~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 121 HSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp SSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC-
T ss_pred CCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCcc
Confidence 999888788889999999999999998556666 6889999999999999999887 78889999999999987
No 105
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.70 E-value=6.8e-17 Score=165.01 Aligned_cols=173 Identities=23% Similarity=0.246 Sum_probs=96.9
Q ss_pred ccccCceeccCCCcCccCCCCCCCCCCCCEEecccccccccccccccCccccccccccccccccccccccCCCCCccEEE
Q 003802 421 PLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILC 500 (794)
Q Consensus 421 ~l~~L~~L~L~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 500 (794)
.+++|++|++++|.+... +.+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+ +| .+..+++|++|+
T Consensus 44 ~l~~L~~L~l~~~~i~~~-~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~ 118 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSV-QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLS 118 (291)
T ss_dssp HHHTCCEEECTTSCCCCC-TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEE
T ss_pred hcCcccEEEccCCCcccC-hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEE
Confidence 344455555554433222 334445555555555554433222 5555555555555554332 22 255666666666
Q ss_pred ecCCCCCCCCCccccCCCCCcEEEccCccCcccCcccccCCCCCEEEcCCCCCCCCccccccchhccccCCCCCCCcccc
Q 003802 501 LCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPPSIVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLS 580 (794)
Q Consensus 501 L~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 580 (794)
+++|.+.+. ..+..+++|+.|++++|.++.+ ..+..+++|+.|++++|... .
T Consensus 119 L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~-------------------------~ 170 (291)
T 1h6t_A 119 LEHNGISDI--NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQIS-------------------------D 170 (291)
T ss_dssp CTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCC-------------------------C
T ss_pred CCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccc-------------------------c
Confidence 666655542 3456666666666666666665 45666667777777666521 1
Q ss_pred CCCCCCCCCCCEEecCCCCCccCCCCccccCCCCCCeEeCCCCCCccCc
Q 003802 581 FPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLP 629 (794)
Q Consensus 581 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp 629 (794)
++.+..+++|+.|++++|.+.. ++ .+..+++|+.|++++|.++..|
T Consensus 171 ~~~l~~l~~L~~L~L~~N~i~~--l~-~l~~l~~L~~L~l~~n~i~~~~ 216 (291)
T 1h6t_A 171 IVPLAGLTKLQNLYLSKNHISD--LR-ALAGLKNLDVLELFSQECLNKP 216 (291)
T ss_dssp CGGGTTCTTCCEEECCSSCCCB--CG-GGTTCTTCSEEEEEEEEEECCC
T ss_pred chhhcCCCccCEEECCCCcCCC--Ch-hhccCCCCCEEECcCCcccCCc
Confidence 1125566777777777777432 33 3677777888888877776554
No 106
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.69 E-value=6.5e-19 Score=196.21 Aligned_cols=207 Identities=18% Similarity=0.217 Sum_probs=139.2
Q ss_pred CCCCceEEEcCCCCcccccccccccccCceeccCCCcCccCCCCCCCCCCCCEEecccccccccccccccCcccccccc-
Q 003802 398 RPEKLFKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLN- 476 (794)
Q Consensus 398 ~~~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~- 476 (794)
..++|+.|+|++|.++.+|..++++++|+.|++++|......+ ..+..+...+..|..++.+++|+.|+
T Consensus 347 ~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~----------~ll~~~~~~~~~~~~l~~l~~L~~L~~ 416 (567)
T 1dce_A 347 TDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTII----------LLMRALDPLLYEKETLQYFSTLKAVDP 416 (567)
T ss_dssp TTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH----------HHHHHHCTGGGHHHHHHHHHHHHHHCG
T ss_pred cCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHH----------HHHHhcccccCCHHHHHHHHhcccCcc
Confidence 4668899999999999999999999999999997764211111 01112234455667777777777777
Q ss_pred cccccccccccc------ccC--CCCCccEEEecCCCCCCCCCccccCCCCCcEEEccCccCcccCcccccCCCCCEEEc
Q 003802 477 LKDCRNLVSFPK------NVC--LMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPPSIVQLVNLKIFSL 548 (794)
Q Consensus 477 l~~n~~~~~~~~------~~~--~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l 548 (794)
++.|.+ ..++. .+. ....|+.|++++|.+.+ +|. ++.+++|+.|++++|.++.+|..++.+++|+.|++
T Consensus 417 l~~n~~-~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L 493 (567)
T 1dce_A 417 MRAAYL-DDLRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQA 493 (567)
T ss_dssp GGHHHH-HHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEEC
T ss_pred hhhccc-chhhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCcccccccchhhhcCCCCCEEEC
Confidence 444421 11110 000 01258889998887766 565 88888899999999888888888888888888888
Q ss_pred CCCCCCCCccccccchhccccCCCCCCCccccCCCCCCCCCCCEEecCCCCCccCCC-CccccCCCCCCeEeCCCCCCcc
Q 003802 549 HGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAI-PSDIGSLFSLEAIDLSGNNFFS 627 (794)
Q Consensus 549 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~l~~L~~L~L~~n~l~~ 627 (794)
++|... .++.++.+++|+.|+|++|. +++.. |..++.+++|+.|+|++|.++.
T Consensus 494 s~N~l~-------------------------~lp~l~~l~~L~~L~Ls~N~-l~~~~~p~~l~~l~~L~~L~L~~N~l~~ 547 (567)
T 1dce_A 494 SDNALE-------------------------NVDGVANLPRLQELLLCNNR-LQQSAAIQPLVSCPRLVLLNLQGNSLCQ 547 (567)
T ss_dssp CSSCCC-------------------------CCGGGTTCSSCCEEECCSSC-CCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred CCCCCC-------------------------CCcccCCCCCCcEEECCCCC-CCCCCCcHHHhcCCCCCEEEecCCcCCC
Confidence 877621 12346667777777777777 34333 7777777777777777777775
Q ss_pred Cchh----hhccCCCCEEec
Q 003802 628 LPSS----INQLLKLKILCL 643 (794)
Q Consensus 628 lp~~----l~~l~~L~~L~L 643 (794)
+|.. +..+|+|+.|++
T Consensus 548 ~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 548 EEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SSSCTTHHHHHCTTCSEEEC
T ss_pred CccHHHHHHHHCcccCccCC
Confidence 5432 244677777754
No 107
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.68 E-value=2.7e-17 Score=184.21 Aligned_cols=17 Identities=18% Similarity=0.393 Sum_probs=6.7
Q ss_pred ccCCCCCCeEeCCCCCC
Q 003802 609 IGSLFSLEAIDLSGNNF 625 (794)
Q Consensus 609 ~~~l~~L~~L~L~~n~l 625 (794)
+..+++|+.|+|++|.+
T Consensus 193 l~~l~~L~~L~L~~N~l 209 (605)
T 1m9s_A 193 LAGLKNLDVLELFSQEC 209 (605)
T ss_dssp GTTCTTCSEEECCSEEE
T ss_pred HccCCCCCEEEccCCcC
Confidence 33334444444444433
No 108
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.68 E-value=1.7e-16 Score=162.16 Aligned_cols=169 Identities=18% Similarity=0.157 Sum_probs=136.1
Q ss_pred ccCCCCcEEEEcCcccCCCccccccCcceeeeecCCCCCCCCCCCCCCceEEEcCCCCcccccccccccccCceeccCCC
Q 003802 354 STMSNLRLLEINNLYSSGNLEYLSNNLRYLKWHEYPFNSLPVSFRPEKLFKLNLCNSRIKYLWKGIKPLKELKFMNLSHS 433 (794)
Q Consensus 354 ~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~~~~~~~~l~~~~~~~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~n 433 (794)
..+++|+.|++++|.+. .++....+++|++|++++|.++.++. +..+++|++|++++|
T Consensus 43 ~~l~~L~~L~l~~~~i~---------------------~~~~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n 100 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIK---------------------SVQGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDEN 100 (291)
T ss_dssp HHHHTCCEEECTTSCCC---------------------CCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS
T ss_pred hhcCcccEEEccCCCcc---------------------cChhHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCC
Confidence 45566666666665543 33333345689999999999998877 889999999999999
Q ss_pred cCccCCCCCCCCCCCCEEecccccccccccccccCccccccccccccccccccccccCCCCCccEEEecCCCCCCCCCcc
Q 003802 434 CNLIRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQD 513 (794)
Q Consensus 434 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ 513 (794)
.+.. ++.+..+++|++|++++|.+... ..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+.+..+
T Consensus 101 ~l~~-~~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~-- 173 (291)
T 1h6t_A 101 KVKD-LSSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-- 173 (291)
T ss_dssp CCCC-GGGGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--
T ss_pred cCCC-ChhhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--
Confidence 7655 45588899999999999886653 4688899999999999886554 568889999999999998877554
Q ss_pred ccCCCCCcEEEccCccCcccCcccccCCCCCEEEcCCCC
Q 003802 514 LGEVECLEELDVGGTAIRQIPPSIVQLVNLKIFSLHGCK 552 (794)
Q Consensus 514 ~~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~ 552 (794)
+..+++|+.|++++|.++.++. +..+++|+.|++++|.
T Consensus 174 l~~l~~L~~L~L~~N~i~~l~~-l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 174 LAGLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQE 211 (291)
T ss_dssp GTTCTTCCEEECCSSCCCBCGG-GTTCTTCSEEEEEEEE
T ss_pred hcCCCccCEEECCCCcCCCChh-hccCCCCCEEECcCCc
Confidence 8899999999999999998864 8889999999999886
No 109
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.67 E-value=3.5e-16 Score=152.48 Aligned_cols=148 Identities=13% Similarity=0.068 Sum_probs=97.2
Q ss_pred eEEEcCCCCcccccccccccccCceeccCCCcCccCCCC-CCCCCCCCEEecccccccccccccccCccccccccccccc
Q 003802 403 FKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLIRTPD-FTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCR 481 (794)
Q Consensus 403 ~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~ 481 (794)
+.++++++.++.+|..+. ++|+.|++++|.+....+. |..+++|++|+|++|.+.+..|..|.++++|++|+|++|.
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 345566666666665443 4666666666666555553 6666666667776666666556666777777777777766
Q ss_pred cccccccccCCCCCccEEEecCCCCCCCCCccccCCCCCcEEEccCccCcccCc-ccccCCCCCEEEcCCCC
Q 003802 482 NLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPP-SIVQLVNLKIFSLHGCK 552 (794)
Q Consensus 482 ~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~-~l~~l~~L~~L~l~~~~ 552 (794)
+....+..+..+++|++|+|++|.+.+..|..|..+++|+.|++++|.++.++. .+..+++|+.|++++|.
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCC
Confidence 554444445667777777777777766666667777777777777777776654 36667777777777776
No 110
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.67 E-value=3.6e-16 Score=152.43 Aligned_cols=147 Identities=14% Similarity=0.078 Sum_probs=73.3
Q ss_pred EEEcCCCCcccccccccccccCceeccCCCcCccCCCC--CCCCCCCCEEecccccccccccccccCccccccccccccc
Q 003802 404 KLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLIRTPD--FTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCR 481 (794)
Q Consensus 404 ~L~L~~n~i~~l~~~~~~l~~L~~L~L~~n~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~ 481 (794)
++++++|.++.+|..+. +.+++|++++|.+....+. |..+++|++|++++|.+.+..+..|..+++|++|++++|.
T Consensus 15 ~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 92 (220)
T 2v70_A 15 TVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR 92 (220)
T ss_dssp EEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCc
Confidence 44444444444444332 2334455555444444222 4445555555555554444444445555555555555555
Q ss_pred cccccccccCCCCCccEEEecCCCCCCCCCccccCCCCCcEEEccCccCccc-CcccccCCCCCEEEcCCCC
Q 003802 482 NLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQI-PPSIVQLVNLKIFSLHGCK 552 (794)
Q Consensus 482 ~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l-~~~l~~l~~L~~L~l~~~~ 552 (794)
+.+..+..+..+++|++|+|++|.+.+..|..|..+++|+.|++++|.++.+ |..+..+++|+.|++++|.
T Consensus 93 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 93 LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp CCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred cCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcC
Confidence 4444444455555555555555555555455555555555555555555544 4445555555555555554
No 111
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.66 E-value=7e-16 Score=150.36 Aligned_cols=150 Identities=18% Similarity=0.181 Sum_probs=131.8
Q ss_pred ceeeeecCCCCCCCCCCCCCCceEEEcCCCCcccccc--cccccccCceeccCCCcCccCCCC-CCCCCCCCEEeccccc
Q 003802 381 RYLKWHEYPFNSLPVSFRPEKLFKLNLCNSRIKYLWK--GIKPLKELKFMNLSHSCNLIRTPD-FTGVPNLERLNLEGCT 457 (794)
Q Consensus 381 ~~L~~~~~~~~~l~~~~~~~~L~~L~L~~n~i~~l~~--~~~~l~~L~~L~L~~n~~~~~~~~-~~~l~~L~~L~l~~~~ 457 (794)
+.+++.++.+..+|..+ +..+++|++++|.++.++. .|..+++|++|+|++|.+....+. |.++++|++|+|++|.
T Consensus 14 ~~l~~s~n~l~~iP~~~-~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 92 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHI-PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR 92 (220)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEeEeCCCCcccCccCC-CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCc
Confidence 35566666666676654 3467899999999998843 389999999999999998888775 9999999999999999
Q ss_pred ccccccccccCccccccccccccccccccccccCCCCCccEEEecCCCCCCCCCccccCCCCCcEEEccCccCc
Q 003802 458 RLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIR 531 (794)
Q Consensus 458 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~ 531 (794)
+.+..+..+..+++|++|++++|.+.+..|..+..+++|++|+|++|.+.+..|..|..+++|+.|++++|.+.
T Consensus 93 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 93 LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp CCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred cCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 98888888999999999999999988888899999999999999999999988999999999999999999876
No 112
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.66 E-value=7.4e-16 Score=150.19 Aligned_cols=150 Identities=17% Similarity=0.191 Sum_probs=131.0
Q ss_pred ceeeeecCCCCCCCCCCCCCCceEEEcCCCCcccccc-cccccccCceeccCCCcCccCCCC-CCCCCCCCEEecccccc
Q 003802 381 RYLKWHEYPFNSLPVSFRPEKLFKLNLCNSRIKYLWK-GIKPLKELKFMNLSHSCNLIRTPD-FTGVPNLERLNLEGCTR 458 (794)
Q Consensus 381 ~~L~~~~~~~~~l~~~~~~~~L~~L~L~~n~i~~l~~-~~~~l~~L~~L~L~~n~~~~~~~~-~~~l~~L~~L~l~~~~~ 458 (794)
+.++..++.+..+|..++ .+|++|++++|.|+.++. .|..+++|++|+|++|.+....+. |.++++|++|+|++|.+
T Consensus 14 ~~v~c~~~~l~~iP~~l~-~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l 92 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP-ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92 (220)
T ss_dssp TEEECTTSCCSSCCSSCC-TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCC
T ss_pred CEEEcCCCCcCcCCCccC-cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcC
Confidence 345566666777776654 689999999999998876 589999999999999998888665 99999999999999988
Q ss_pred cccccccccCccccccccccccccccccccccCCCCCccEEEecCCCCCCCCCccccCCCCCcEEEccCccCc
Q 003802 459 LLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIR 531 (794)
Q Consensus 459 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~ 531 (794)
....+..|..+++|++|++++|.+.+..|..+..+++|++|+|++|.+.+..+..|..+++|+.|++++|.+.
T Consensus 93 ~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 93 TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 7665566889999999999999988888889999999999999999998888888999999999999999875
No 113
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.65 E-value=4.1e-16 Score=164.87 Aligned_cols=132 Identities=14% Similarity=0.089 Sum_probs=91.7
Q ss_pred eEEEcCCCCcccccccccccccCceeccCCCcCccCCCC-CC-CCCCCCEEecccccccccccccccCcccccccccccc
Q 003802 403 FKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLIRTPD-FT-GVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDC 480 (794)
Q Consensus 403 ~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~n~~~~~~~~-~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n 480 (794)
++++++++.++.+|..+. +.++.|+|++|.+....+. +. .+++|++|+|++|.+....+..|..+++|++|+|++|
T Consensus 21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 466777777777776543 3467777777776666555 54 6777777777777766655566777777777777777
Q ss_pred ccccccccccCCCCCccEEEecCCCCCCCCCccccCCCCCcEEEccCccCcccCcc
Q 003802 481 RNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPPS 536 (794)
Q Consensus 481 ~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~ 536 (794)
.+....+..+..+++|++|+|++|.+....+..|.++++|+.|+|++|.++.+|..
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~ 154 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVE 154 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGG
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHH
Confidence 76555555667777777777777777666666777777777777777777766654
No 114
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.65 E-value=6.6e-16 Score=149.56 Aligned_cols=129 Identities=17% Similarity=0.047 Sum_probs=62.6
Q ss_pred CceEEEcCCCCccccccc-ccccccCceeccCCCcCccCCCC-CCCCCCCCEEecccccccccccccccCcccccccccc
Q 003802 401 KLFKLNLCNSRIKYLWKG-IKPLKELKFMNLSHSCNLIRTPD-FTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLK 478 (794)
Q Consensus 401 ~L~~L~L~~n~i~~l~~~-~~~l~~L~~L~L~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 478 (794)
+|++|++++|.++.++.. +..+++|++|++++|.+...++. |..+++|++|++++|.+.+..+..+..+++|++|+++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 108 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN 108 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcC
Confidence 455555555555544433 44455555555555544443333 4445555555555554443333334455555555555
Q ss_pred ccccccccccccCCCCCccEEEecCCCCCCCCCccccCCCCCcEEEccCcc
Q 003802 479 DCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTA 529 (794)
Q Consensus 479 ~n~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 529 (794)
+|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.
T Consensus 109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 109 TNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 159 (208)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred CCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCC
Confidence 554443333334455555555555554444333334555555555555553
No 115
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.64 E-value=6.6e-16 Score=147.97 Aligned_cols=149 Identities=14% Similarity=0.121 Sum_probs=118.4
Q ss_pred cceeeeecCCCCCCCCCCCCCCceEEEcCCCCcccccccccccccCceeccCCCcCccC-CCCCCCCCCCCEEecccccc
Q 003802 380 LRYLKWHEYPFNSLPVSFRPEKLFKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLIR-TPDFTGVPNLERLNLEGCTR 458 (794)
Q Consensus 380 l~~L~~~~~~~~~l~~~~~~~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~n~~~~~-~~~~~~l~~L~~L~l~~~~~ 458 (794)
++.|++.++.+..+++...+++|++|++++|.++.++ .+..+++|++|++++|.+... +..+..+++|++|++++|.+
T Consensus 46 L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i 124 (197)
T 4ezg_A 46 LTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAH 124 (197)
T ss_dssp CCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBC
T ss_pred ccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCcc
Confidence 3333333334444443235568999999999887765 688899999999999988764 44599999999999999998
Q ss_pred cccccccccCccccccccccccccccccccccCCCCCccEEEecCCCCCCCCCccccCCCCCcEEEccCccCcc
Q 003802 459 LLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQ 532 (794)
Q Consensus 459 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~ 532 (794)
.+..|..+..+++|++|++++|...+.+| .+..+++|++|++++|.+.+ ++ .+..+++|+.|++++|++..
T Consensus 125 ~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 125 DDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp BGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred CcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence 88888899999999999999998666776 68899999999999998876 33 68899999999999998753
No 116
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.64 E-value=1.8e-15 Score=148.57 Aligned_cols=146 Identities=20% Similarity=0.210 Sum_probs=76.8
Q ss_pred EEEcCCCCcccccccccccccCceeccCCCcCccCCCC-CCCCCCCCEEecccccccccccccccCcccccccccccccc
Q 003802 404 KLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLIRTPD-FTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRN 482 (794)
Q Consensus 404 ~L~L~~n~i~~l~~~~~~l~~L~~L~L~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~ 482 (794)
.++.+++.++.+|..+. ++|++|+|++|.+....+. |..+++|++|+|++|.+....+..+..+++|++|++++|.+
T Consensus 23 ~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l 100 (229)
T 3e6j_A 23 TVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQL 100 (229)
T ss_dssp EEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcC
Confidence 44455555555554332 4555555555555444333 45555555555555554333333445555555555555554
Q ss_pred ccccccccCCCCCccEEEecCCCCCCCCCccccCCCCCcEEEccCccCcccCc-ccccCCCCCEEEcCCCC
Q 003802 483 LVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPP-SIVQLVNLKIFSLHGCK 552 (794)
Q Consensus 483 ~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~-~l~~l~~L~~L~l~~~~ 552 (794)
.+..+..+..+++|++|++++|.+. .+|..+..+++|+.|++++|.++.+|. .+..+++|+.|++++|.
T Consensus 101 ~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 101 TVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred CccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCC
Confidence 4443444455555666666555544 445555556666666666666655543 34555666666666655
No 117
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.64 E-value=9.9e-16 Score=161.88 Aligned_cols=171 Identities=20% Similarity=0.189 Sum_probs=142.4
Q ss_pred ceeeeecCCCCCCCCCCCCCCceEEEcCCCCccccccc-cc-ccccCceeccCCCcCccCCCC-CCCCCCCCEEeccccc
Q 003802 381 RYLKWHEYPFNSLPVSFRPEKLFKLNLCNSRIKYLWKG-IK-PLKELKFMNLSHSCNLIRTPD-FTGVPNLERLNLEGCT 457 (794)
Q Consensus 381 ~~L~~~~~~~~~l~~~~~~~~L~~L~L~~n~i~~l~~~-~~-~l~~L~~L~L~~n~~~~~~~~-~~~l~~L~~L~l~~~~ 457 (794)
+.+++.++.+..+|..+ +..+++|+|++|.|+.++.. +. .+++|++|+|++|.+....+. |.++++|++|+|++|.
T Consensus 21 ~~l~c~~~~l~~iP~~~-~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 99 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSL-PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH 99 (361)
T ss_dssp TEEECCSSCCSSCCSSC-CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEEEeCCCCcCccCccC-CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc
Confidence 45666666677777655 34689999999999988765 65 899999999999998888776 9999999999999999
Q ss_pred ccccccccccCccccccccccccccccccccccCCCCCccEEEecCCCCCCCCCccc---cCCCCCcEEEccCccCcccC
Q 003802 458 RLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDL---GEVECLEELDVGGTAIRQIP 534 (794)
Q Consensus 458 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~---~~l~~L~~L~l~~~~l~~l~ 534 (794)
+....+..|..+++|++|+|++|.+....|..+..+++|++|+|++|.+....+..| ..+++|+.|+|++|.++.+|
T Consensus 100 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~ 179 (361)
T 2xot_A 100 LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLP 179 (361)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCC
T ss_pred CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccC
Confidence 877777788999999999999999888888889999999999999998877544445 67999999999999999887
Q ss_pred c-ccccCCC--CCEEEcCCCC
Q 003802 535 P-SIVQLVN--LKIFSLHGCK 552 (794)
Q Consensus 535 ~-~l~~l~~--L~~L~l~~~~ 552 (794)
. .+..++. |+.|++++|.
T Consensus 180 ~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 180 LTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp HHHHHHSCHHHHTTEECCSSC
T ss_pred HHHhhhccHhhcceEEecCCC
Confidence 4 5667776 4889999987
No 118
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.64 E-value=1.4e-15 Score=170.33 Aligned_cols=165 Identities=17% Similarity=0.160 Sum_probs=134.2
Q ss_pred CcceeeeecCCCCCCCCCCCCCCceEEEcCCCCcccccccccccccCceeccCCCcCccCCCCCCCCCCCCEEecccccc
Q 003802 379 NLRYLKWHEYPFNSLPVSFRPEKLFKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCTR 458 (794)
Q Consensus 379 ~l~~L~~~~~~~~~l~~~~~~~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~n~~~~~~~~~~~l~~L~~L~l~~~~~ 458 (794)
+|+.|.+.++.+..++....+++|++|+|++|.++.++. +..+++|++|+|++|.+.. ++.+..+++|+.|+|++|.+
T Consensus 44 ~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~-l~~l~~l~~L~~L~Ls~N~l 121 (605)
T 1m9s_A 44 SIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKD-LSSLKDLKKLKSLSLEHNGI 121 (605)
T ss_dssp TCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCC-CTTSTTCTTCCEEECTTSCC
T ss_pred CCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCC-ChhhccCCCCCEEEecCCCC
Confidence 344444444444445443356799999999999998876 8899999999999997654 55788999999999999887
Q ss_pred cccccccccCccccccccccccccccccccccCCCCCccEEEecCCCCCCCCCccccCCCCCcEEEccCccCcccCcccc
Q 003802 459 LLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPPSIV 538 (794)
Q Consensus 459 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~l~ 538 (794)
.. + ..+..+++|+.|+|++|.+.+. ..+..+++|+.|+|++|.+.+..| +..+++|+.|+|++|.++.+| .+.
T Consensus 122 ~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l~-~l~ 194 (605)
T 1m9s_A 122 SD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLR-ALA 194 (605)
T ss_dssp CC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCG-GGT
T ss_pred CC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCCh-HHc
Confidence 65 3 4688899999999999886654 568899999999999998887665 889999999999999999885 588
Q ss_pred cCCCCCEEEcCCCC
Q 003802 539 QLVNLKIFSLHGCK 552 (794)
Q Consensus 539 ~l~~L~~L~l~~~~ 552 (794)
.+++|+.|++++|.
T Consensus 195 ~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 195 GLKNLDVLELFSQE 208 (605)
T ss_dssp TCTTCSEEECCSEE
T ss_pred cCCCCCEEEccCCc
Confidence 89999999999987
No 119
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.63 E-value=2.6e-15 Score=147.42 Aligned_cols=150 Identities=15% Similarity=0.058 Sum_probs=128.8
Q ss_pred cceeeeecCCCCCCCCCCCCCCceEEEcCCCCcccc-cccccccccCceeccCCCcCccCCCC-CCCCCCCCEEeccccc
Q 003802 380 LRYLKWHEYPFNSLPVSFRPEKLFKLNLCNSRIKYL-WKGIKPLKELKFMNLSHSCNLIRTPD-FTGVPNLERLNLEGCT 457 (794)
Q Consensus 380 l~~L~~~~~~~~~l~~~~~~~~L~~L~L~~n~i~~l-~~~~~~l~~L~~L~L~~n~~~~~~~~-~~~l~~L~~L~l~~~~ 457 (794)
...++..++.+..+|..+. ++|++|++++|.++.+ |..+..+++|++|+|++|.+...++. |..+++|++|+|++|.
T Consensus 21 ~~~v~c~~~~l~~ip~~~~-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~ 99 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP-TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ 99 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC-TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEeEccCCCcCccCCCCC-CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc
Confidence 3456666666777776654 7899999999999988 56689999999999999998777666 7899999999999998
Q ss_pred ccccccccccCccccccccccccccccccccccCCCCCccEEEecCCCCCCCCCccccCCCCCcEEEccCccCc
Q 003802 458 RLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIR 531 (794)
Q Consensus 458 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~ 531 (794)
+....+..+..+++|++|++++|.+. .+|..+..+++|++|+|++|.+.+..+..|..+++|+.|++++|.+.
T Consensus 100 l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 100 LTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred CCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 87776677899999999999998865 78888999999999999999988777777999999999999999877
No 120
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.63 E-value=2.6e-16 Score=157.93 Aligned_cols=127 Identities=23% Similarity=0.276 Sum_probs=70.8
Q ss_pred cCCCCCccEEEecCCCCCCCCCccccCCCCCcEEEccCccCcccCcccccCCCCCEEEcCCCCCCCCccccccchhcccc
Q 003802 490 VCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPPSIVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLL 569 (794)
Q Consensus 490 ~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 569 (794)
+..+++|++|++++|.+.+..+ +..+++|+.|++++|.++.+|.... ++|+.|++++|...
T Consensus 59 l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~L~L~~N~l~--------------- 119 (263)
T 1xeu_A 59 MQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNGIPS--ACLSRLFLDNNELR--------------- 119 (263)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSCCTTCCC--SSCCEEECCSSCCS---------------
T ss_pred HhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCCcCcccc--CcccEEEccCCccC---------------
Confidence 4444445555555444433222 4555555555555555554443222 55555555555411
Q ss_pred CCCCCCCccccCCCCCCCCCCCEEecCCCCCccCCCCccccCCCCCCeEeCCCCCCccCchhhhccCCCCEEecCCCcCC
Q 003802 570 PNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLPSSINQLLKLKILCLEKCRNL 649 (794)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~~~ 649 (794)
.++.+..+++|+.|++++|.+.. ++ .+..+++|+.|++++|.++.+ ..+..+++|+.|++++|+..
T Consensus 120 ----------~~~~l~~l~~L~~L~Ls~N~i~~--~~-~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 120 ----------DTDSLIHLKNLEILSIRNNKLKS--IV-MLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp ----------BSGGGTTCTTCCEEECTTSCCCB--CG-GGGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEEEE
T ss_pred ----------CChhhcCcccccEEECCCCcCCC--Ch-HHccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCccc
Confidence 11224556667777777776322 33 566777777777777777766 45677777777777777644
No 121
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.61 E-value=9.4e-16 Score=153.92 Aligned_cols=142 Identities=20% Similarity=0.152 Sum_probs=78.8
Q ss_pred CceEEEcCCCCcccccccccccccCceeccCCCcCccCCCCCCCCCCCCEEecccccccccccccccCcccccccccccc
Q 003802 401 KLFKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDC 480 (794)
Q Consensus 401 ~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n 480 (794)
++..++++++.++.++ .+..+++|++|++++|.+.. .+.+..+++|++|++++|.+.+..+ +..+++|++|++++|
T Consensus 20 ~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~-l~~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N 95 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQS-LAGMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRN 95 (263)
T ss_dssp HHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCC-CTTGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSS
T ss_pred HHHHHHhcCCCccccc-chhhcCcCcEEECcCCCccc-chHHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCC
Confidence 4445555666666555 45666666666666665443 2355566666666666665443332 566666666666665
Q ss_pred ccccccccccCCCCCccEEEecCCCCCCCCCccccCCCCCcEEEccCccCcccCcccccCCCCCEEEcCCCC
Q 003802 481 RNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPPSIVQLVNLKIFSLHGCK 552 (794)
Q Consensus 481 ~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~ 552 (794)
.+.+ +|. +.. ++|++|++++|.+.+. ..+..+++|+.|++++|+++.++ .+..+++|+.|++++|.
T Consensus 96 ~l~~-l~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~ 161 (263)
T 1xeu_A 96 RLKN-LNG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNE 161 (263)
T ss_dssp CCSC-CTT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSC
T ss_pred ccCC-cCc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCc
Confidence 5433 332 222 5666666666555442 23556666666666666665554 35555555555555544
No 122
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.58 E-value=1e-17 Score=186.58 Aligned_cols=179 Identities=16% Similarity=0.143 Sum_probs=136.8
Q ss_pred CCCCCCCCEEecccccccccccccccCccccccccccccc-------------cccccccccCCCCCccEEE-ecCCCCC
Q 003802 442 FTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCR-------------NLVSFPKNVCLMKSLKILC-LCGCLKL 507 (794)
Q Consensus 442 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~-------------~~~~~~~~~~~l~~L~~L~-L~~~~~~ 507 (794)
+..+++|+.|+|++|.+ ..+|..+++|++|+.|++++|. ..+..|..++.+++|+.|+ ++.|.+.
T Consensus 345 ~~~~~~L~~L~Ls~n~L-~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~ 423 (567)
T 1dce_A 345 SATDEQLFRCELSVEKS-TVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD 423 (567)
T ss_dssp CSTTTTSSSCCCCHHHH-HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred cccCccceeccCChhhH-HhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc
Confidence 35678888999998775 4788899999999999987664 4556677788888888888 4443221
Q ss_pred CCCCc------cccC--CCCCcEEEccCccCcccCcccccCCCCCEEEcCCCCCCCCccccccchhccccCCCCCCCccc
Q 003802 508 EKLPQ------DLGE--VECLEELDVGGTAIRQIPPSIVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCL 579 (794)
Q Consensus 508 ~~~~~------~~~~--l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 579 (794)
. ++. .+.. ...|+.|++++|.++.+|. ++.+++|+.|++++|...
T Consensus 424 ~-L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~------------------------- 476 (567)
T 1dce_A 424 D-LRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLR------------------------- 476 (567)
T ss_dssp H-HHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCC-------------------------
T ss_pred h-hhhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCccccc-------------------------
Confidence 1 110 0111 1258899999999999987 899999999999998722
Q ss_pred cC-CCCCCCCCCCEEecCCCCCccCCCCccccCCCCCCeEeCCCCCCccC--chhhhccCCCCEEecCCCcCCCC
Q 003802 580 SF-PRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSL--PSSINQLLKLKILCLEKCRNLKS 651 (794)
Q Consensus 580 ~~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l--p~~l~~l~~L~~L~L~~n~~~~~ 651 (794)
.+ ..++.+++|+.|+|++|.+.. +| .++.+++|+.|+|++|+++.+ |..++.+++|+.|+|++|++.+.
T Consensus 477 ~lp~~~~~l~~L~~L~Ls~N~l~~--lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~ 548 (567)
T 1dce_A 477 ALPPALAALRCLEVLQASDNALEN--VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 548 (567)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCCC--CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred ccchhhhcCCCCCEEECCCCCCCC--Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCC
Confidence 11 236778899999999998543 67 788999999999999999977 88899999999999999985543
No 123
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.57 E-value=5.4e-15 Score=137.64 Aligned_cols=137 Identities=19% Similarity=0.146 Sum_probs=104.1
Q ss_pred CCCceEEEcCCCCcc--cccccccccccCceeccCCCcCccCCCCCCCCCCCCEEecccccccccccccccCcccccccc
Q 003802 399 PEKLFKLNLCNSRIK--YLWKGIKPLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLN 476 (794)
Q Consensus 399 ~~~L~~L~L~~n~i~--~l~~~~~~l~~L~~L~L~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 476 (794)
+++|++|++++|.++ .+|..+..+++|++|++++|.+... +.+..+++|++|++++|.+.+.+|..+..+++|++|+
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 467888899998888 8888788888899999988876655 5688888888888888887766777777788888888
Q ss_pred ccccccccc-cccccCCCCCccEEEecCCCCCCCCC---ccccCCCCCcEEEccCccCcccCcc
Q 003802 477 LKDCRNLVS-FPKNVCLMKSLKILCLCGCLKLEKLP---QDLGEVECLEELDVGGTAIRQIPPS 536 (794)
Q Consensus 477 l~~n~~~~~-~~~~~~~l~~L~~L~L~~~~~~~~~~---~~~~~l~~L~~L~l~~~~l~~l~~~ 536 (794)
+++|.+.+. .+..+..+++|++|++++|.+.+..+ ..+..+++|+.|++++|.+.++|..
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 165 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPDS 165 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCSS
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcccc
Confidence 888775442 22567777888888888877665544 3677777888888877777766653
No 124
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.55 E-value=5.4e-14 Score=148.41 Aligned_cols=276 Identities=14% Similarity=0.081 Sum_probs=158.0
Q ss_pred hhhhHhHhcCCCCeEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEEechhhh--cccChHHHHHHHHHHHhc-----
Q 003802 2 EKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVS--VTRGLVPLQEQLLSEVLM----- 74 (794)
Q Consensus 2 ~~l~~~l~~~~~~~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~--~~~~~~~~~~~i~~~~~~----- 74 (794)
+++.+++..+ +++.|+|++|+|||+|+++++++.. .+|+....... .........+.+...+..
T Consensus 22 ~~L~~~l~~~----~~v~i~G~~G~GKT~Ll~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 92 (350)
T 2qen_A 22 RKLEESLENY----PLTLLLGIRRVGKSSLLRAFLNERP-----GILIDCRELYAERGHITREELIKELQSTISPFQKFQ 92 (350)
T ss_dssp HHHHHHHHHC----SEEEEECCTTSSHHHHHHHHHHHSS-----EEEEEHHHHHHTTTCBCHHHHHHHHHHHSCSHHHHH
T ss_pred HHHHHHHhcC----CeEEEECCCcCCHHHHHHHHHHHcC-----cEEEEeecccccccCCCHHHHHHHHHHHHHHHHhHh
Confidence 3455555543 6899999999999999999998752 66765321110 011333444444433211
Q ss_pred ----------cccc--cccchhhhHHHHHHHhcC-CeEEEEEcCCCChH--------H-HHHHhcCCCCCCCCCEEEEEe
Q 003802 75 ----------ERDL--IIWDVHKGINLIRWRLCR-KRVLVILDDVDQLE--------Q-LQALVGNHDWFGFGSRIIITS 132 (794)
Q Consensus 75 ----------~~~~--~~~~~~~~~~~l~~~l~~-~r~LlVlDd~~~~~--------~-~~~l~~~~~~~~~gs~IlvTt 132 (794)
.... ...+.++..+.+.+..+. ++.+|||||++... + +..+..... ..++.++|+|+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~-~~~~~~~il~g 171 (350)
T 2qen_A 93 SKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAYD-SLPNLKIILTG 171 (350)
T ss_dssp HHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHHH-HCTTEEEEEEE
T ss_pred hhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHHH-hcCCeEEEEEC
Confidence 0000 112334444555554432 48999999997643 2 222222111 12478899999
Q ss_pred CChhhhhhc------------CcCcEEEcCCCChHhHHHHHHhhccCCCCCChhHHHHHHHHHHHhCCCchHHHHHhhhh
Q 003802 133 RDEHVLKSH------------GVTNTYKVRGLDYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIEVLGSFL 200 (794)
Q Consensus 133 R~~~v~~~~------------~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~a~~L 200 (794)
+...+.... .....+++.+|+.+|+.+++.......... ...+.+.++++.++|+|+++..++..+
T Consensus 172 ~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~--~~~~~~~~i~~~tgG~P~~l~~~~~~~ 249 (350)
T 2qen_A 172 SEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLD--VPENEIEEAVELLDGIPGWLVVFGVEY 249 (350)
T ss_dssp SSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCC--CCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 876432211 112478999999999999998764221111 123567899999999999999887654
Q ss_pred cC-CChHHHH-HHHHHHHcCCChhHHHHHHhhccCC---ChhhHhhhhhhcccccCCCHHHHHHhhhh-c-CCCc---hh
Q 003802 201 CG-RSVEEWK-SALNRLQEAPNEKVLKVLRISYDGL---DRRDKEIFLDIACFFKGKDEDRVRKKLDS-C-GFNS---DI 270 (794)
Q Consensus 201 ~~-~~~~~w~-~~l~~l~~~~~~~~~~~l~~sy~~L---~~~~~~~~~~~s~fp~~~~~~~l~~~~~~-~-g~~~---~~ 270 (794)
.. .+...+. ...+. +...+.-.+..+ ++..+..+..+|. ...+...+...... . +... ..
T Consensus 250 ~~~~~~~~~~~~~~~~--------~~~~~~~~l~~l~~~~~~~~~~l~~la~--g~~~~~~l~~~~~~~~~~~~~~~~~~ 319 (350)
T 2qen_A 250 LRNGDFGRAMKRTLEV--------AKGLIMGELEELRRRSPRYVDILRAIAL--GYNRWSLIRDYLAVKGTKIPEPRLYA 319 (350)
T ss_dssp HHHCCHHHHHHHHHHH--------HHHHHHHHHHHHHHHCHHHHHHHHHHHT--TCCSHHHHHHHHHHTTCCCCHHHHHH
T ss_pred hccccHhHHHHHHHHH--------HHHHHHHHHHHHHhCChhHHHHHHHHHh--CCCCHHHHHHHHHHHhCCCCHHHHHH
Confidence 22 2222221 11111 111111111222 6778888888887 23455555544322 1 2222 35
Q ss_pred hHHHHhhcccceeecCeehH-HHHHHHHHH
Q 003802 271 GIRELLDKSLITIVNNKLWM-HDLLQEMGW 299 (794)
Q Consensus 271 ~l~~L~~~~ll~~~~~~~~m-h~li~~~~~ 299 (794)
+++.|.+.+++...++.|.+ |++++.+.+
T Consensus 320 ~l~~L~~~gli~~~~~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 320 LLENLKKMNWIVEEDNTYKIADPVVATVLR 349 (350)
T ss_dssp HHHHHHHTTSEEEETTEEEESSHHHHHHHT
T ss_pred HHHHHHhCCCEEecCCEEEEecHHHHHHHc
Confidence 68999999999887666654 777777653
No 125
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.53 E-value=2.4e-14 Score=136.20 Aligned_cols=127 Identities=15% Similarity=0.096 Sum_probs=75.9
Q ss_pred eEEEcCCCCcccccccccccccCceeccCCCcCccCCCC--CCCCCCCCEEecccccccccccccccCcccccccccccc
Q 003802 403 FKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLIRTPD--FTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDC 480 (794)
Q Consensus 403 ~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~n~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n 480 (794)
+++++++|.++++|..+.. +|++|++++|.+....+. |..+++|++|++++|.+.+..|..|..+++|++|++++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 4566666666666654432 566666666655555443 555666666666666655555556666666666666666
Q ss_pred ccccccccccCCCCCccEEEecCCCCCCCCCccccCCCCCcEEEccCccCc
Q 003802 481 RNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIR 531 (794)
Q Consensus 481 ~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~ 531 (794)
.+.+..+..+..+++|++|+|++|.+.+..|..+..+++|++|++++|.+.
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 655555555566666666666666666555555666666666666666554
No 126
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.50 E-value=1.7e-14 Score=131.27 Aligned_cols=106 Identities=19% Similarity=0.094 Sum_probs=55.8
Q ss_pred CCCCCCCCEEecccccccccccccccCccccccccccccccccccccccCCCCCccEEEecCCCCCCC-CCccccCCCCC
Q 003802 442 FTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEK-LPQDLGEVECL 520 (794)
Q Consensus 442 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~~~~~~~-~~~~~~~l~~L 520 (794)
+..+++|++|++++|.+.+. ..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+. .+..++.+++|
T Consensus 38 ~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L 115 (149)
T 2je0_A 38 TDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENL 115 (149)
T ss_dssp CTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTC
T ss_pred HhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCC
Confidence 34444444444444433322 3444455555555555554444444444555555555555554442 22455666666
Q ss_pred cEEEccCccCcccCc----ccccCCCCCEEEcC
Q 003802 521 EELDVGGTAIRQIPP----SIVQLVNLKIFSLH 549 (794)
Q Consensus 521 ~~L~l~~~~l~~l~~----~l~~l~~L~~L~l~ 549 (794)
++|++++|.++.+|. .+..+++|+.|+++
T Consensus 116 ~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 116 KSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 666666666665554 45566666666654
No 127
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.50 E-value=1.2e-14 Score=167.28 Aligned_cols=108 Identities=18% Similarity=0.192 Sum_probs=79.9
Q ss_pred CCCCCCCCEEecccccccccccccccCccccccccccccccccccccccCCCCCccEEEecCCCCCCCCCccccCCCCCc
Q 003802 442 FTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLE 521 (794)
Q Consensus 442 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~ 521 (794)
+..+++|+.|+|++|.+. .+|..+..+++|++|+|++|.+. .+|..++++++|++|+|++|.+. .+|..|+++++|+
T Consensus 220 ~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~ 296 (727)
T 4b8c_D 220 KYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLK 296 (727)
T ss_dssp --CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCS
T ss_pred hccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCC
Confidence 667777777777777654 56666667777777777777655 67777777777888888777766 5677777777788
Q ss_pred EEEccCccCcccCcccccCCCCCEEEcCCCC
Q 003802 522 ELDVGGTAIRQIPPSIVQLVNLKIFSLHGCK 552 (794)
Q Consensus 522 ~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~ 552 (794)
+|+|++|.++.+|..++.+++|+.|+|++|.
T Consensus 297 ~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 297 YFYFFDNMVTTLPWEFGNLCNLQFLGVEGNP 327 (727)
T ss_dssp EEECCSSCCCCCCSSTTSCTTCCCEECTTSC
T ss_pred EEECCCCCCCccChhhhcCCCccEEeCCCCc
Confidence 8888877777777777777788888887777
No 128
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.49 E-value=6.9e-14 Score=130.11 Aligned_cols=21 Identities=19% Similarity=0.033 Sum_probs=8.9
Q ss_pred ccCCCCCCeEeCCCCCCccCc
Q 003802 609 IGSLFSLEAIDLSGNNFFSLP 629 (794)
Q Consensus 609 ~~~l~~L~~L~L~~n~l~~lp 629 (794)
+..+++|++|++++|.+..+|
T Consensus 143 ~~~l~~L~~L~l~~n~~~~~~ 163 (168)
T 2ell_A 143 FKLLPQLTYLDGYDREDQEAP 163 (168)
T ss_dssp HTTCSSCCEETTEETTSCBCC
T ss_pred HHhCccCcEecCCCCChhhcc
Confidence 344444444444444444333
No 129
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.48 E-value=1.7e-13 Score=130.25 Aligned_cols=130 Identities=17% Similarity=0.119 Sum_probs=113.3
Q ss_pred ceeeeecCCCCCCCCCCCCCCceEEEcCCCCccccccc--ccccccCceeccCCCcCccCCCC-CCCCCCCCEEeccccc
Q 003802 381 RYLKWHEYPFNSLPVSFRPEKLFKLNLCNSRIKYLWKG--IKPLKELKFMNLSHSCNLIRTPD-FTGVPNLERLNLEGCT 457 (794)
Q Consensus 381 ~~L~~~~~~~~~l~~~~~~~~L~~L~L~~n~i~~l~~~--~~~l~~L~~L~L~~n~~~~~~~~-~~~l~~L~~L~l~~~~ 457 (794)
+.+++.++.+..+|..+.. +|++|++++|.++.++.. +..+++|++|+|++|.+....+. |.++++|++|+|++|.
T Consensus 11 ~~l~~s~~~l~~ip~~~~~-~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 89 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL-HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK 89 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT-TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CEEEcCCCCcCcCccCCCC-CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc
Confidence 4566666667777765533 899999999999998764 89999999999999999888776 9999999999999999
Q ss_pred ccccccccccCccccccccccccccccccccccCCCCCccEEEecCCCCCCCCC
Q 003802 458 RLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLP 511 (794)
Q Consensus 458 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~ 511 (794)
+.+..+..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+....+
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 90 IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 988888889999999999999999988889999999999999999999876543
No 130
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.47 E-value=6.1e-14 Score=127.54 Aligned_cols=128 Identities=20% Similarity=0.102 Sum_probs=113.2
Q ss_pred CCCceEEEcCCCCcc--cccccccccccCceeccCCCcCccCCCCCCCCCCCCEEecccccccccccccccCcccccccc
Q 003802 399 PEKLFKLNLCNSRIK--YLWKGIKPLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLN 476 (794)
Q Consensus 399 ~~~L~~L~L~~n~i~--~l~~~~~~l~~L~~L~L~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 476 (794)
+++|++|++++|.++ .+|..+..+++|++|++++|.+... +.+..+++|++|++++|.+.+.+|..+..+++|++|+
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 468999999999999 8898899999999999999988766 6699999999999999998887888888899999999
Q ss_pred ccccccccc-cccccCCCCCccEEEecCCCCCCCCC---ccccCCCCCcEEEccC
Q 003802 477 LKDCRNLVS-FPKNVCLMKSLKILCLCGCLKLEKLP---QDLGEVECLEELDVGG 527 (794)
Q Consensus 477 l~~n~~~~~-~~~~~~~l~~L~~L~L~~~~~~~~~~---~~~~~l~~L~~L~l~~ 527 (794)
+++|.+.+. .+..++.+++|++|++++|.+.+..+ ..+..+++|+.|++++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 999987653 44789999999999999998877655 4689999999998864
No 131
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.47 E-value=8.2e-15 Score=168.58 Aligned_cols=194 Identities=17% Similarity=0.142 Sum_probs=95.7
Q ss_pred CCceEEEcCCCCcccccccccccccCceeccCCCcCccCCCCCCCCCCCCEEecccccccccccccccCccccccccccc
Q 003802 400 EKLFKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKD 479 (794)
Q Consensus 400 ~~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 479 (794)
++++.|+|.+|.+...+..+ |+.++|+.+. +..++++.|.+. ..+..+..+++|+.|+|++
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~-----l~~l~Ls~~~-------------i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~ 233 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQAL-----LQHKKLSQYS-------------IDEDDDIENRMV-MPKDSKYDDQLWHALDLSN 233 (727)
T ss_dssp --------------------------------------------------------------------CCCCCCEEECTT
T ss_pred CccceEEeeCCCCCcchhhH-----hhcCccCccc-------------ccCcccccccee-cChhhhccCCCCcEEECCC
Confidence 45677777777776654432 3444455442 233344444332 4566778888888888888
Q ss_pred cccccccccccCCCCCccEEEecCCCCCCCCCccccCCCCCcEEEccCccCcccCcccccCCCCCEEEcCCCCCCCCccc
Q 003802 480 CRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPPSIVQLVNLKIFSLHGCKGQPPKIL 559 (794)
Q Consensus 480 n~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~ 559 (794)
|.+. .+|..+..+++|++|+|++|.+. .+|..|+++++|+.|+|++|.++.+|..++.+++|++|+|++|...
T Consensus 234 n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~----- 306 (727)
T 4b8c_D 234 LQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVT----- 306 (727)
T ss_dssp SCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCC-----
T ss_pred CCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCC-----
Confidence 8754 67777778888888888888777 6777888888888888888888888888888888888888777521
Q ss_pred cccchhccccCCCCCCCccccC-CCCCCCCCCCEEecCCCCCccCCCCccccCCC-CCCeEeCCCCCCc-cCchhhhccC
Q 003802 560 SSNFFLSLLLPNKNSDSMCLSF-PRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLF-SLEAIDLSGNNFF-SLPSSINQLL 636 (794)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~-~L~~L~L~~n~l~-~lp~~l~~l~ 636 (794)
.+ ..+..+++|+.|+|++|. +++.+|..+..+. .+..|+|++|.++ .+| .
T Consensus 307 --------------------~lp~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p------~ 359 (727)
T 4b8c_D 307 --------------------TLPWEFGNLCNLQFLGVEGNP-LEKQFLKILTEKSVTGLIFYLRDNRPEIPLP------H 359 (727)
T ss_dssp --------------------CCCSSTTSCTTCCCEECTTSC-CCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC------C
T ss_pred --------------------ccChhhhcCCCccEEeCCCCc-cCCCChHHHhhcchhhhHHhhccCcccCcCc------c
Confidence 11 126667777777777777 4555555554332 1123556666665 344 2
Q ss_pred CCCEEecCCC
Q 003802 637 KLKILCLEKC 646 (794)
Q Consensus 637 ~L~~L~L~~n 646 (794)
.|+.|++++|
T Consensus 360 ~l~~l~l~~n 369 (727)
T 4b8c_D 360 ERRFIEINTD 369 (727)
T ss_dssp C---------
T ss_pred ccceeEeecc
Confidence 4555566655
No 132
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.46 E-value=9.7e-14 Score=144.67 Aligned_cols=275 Identities=15% Similarity=0.131 Sum_probs=131.5
Q ss_pred eEEEEEecCCcccccchhhhcc-CCCCcEEEEcCcccC--CCccccccCcceeeeecCCCCCCCCCC--C--------CC
Q 003802 334 AVEAIIVDVPEMTELEAKSFST-MSNLRLLEINNLYSS--GNLEYLSNNLRYLKWHEYPFNSLPVSF--R--------PE 400 (794)
Q Consensus 334 ~~~~l~l~~~~~~~~~~~~~~~-~~~L~~L~l~~n~~~--~~~~~~~~~l~~L~~~~~~~~~l~~~~--~--------~~ 400 (794)
.++.+.+.++ +.......+.. +++|++|+|++|.+. ......+..++.+.. ..+.++... . +.
T Consensus 26 ~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~---~~~~I~~~aF~~~~~~~~~g~~ 101 (329)
T 3sb4_A 26 SITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIY---MANFVPAYAFSNVVNGVTKGKQ 101 (329)
T ss_dssp HCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEE---CTTEECTTTTEEEETTEEEECT
T ss_pred ceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCccccccccccccc---cccccCHHHhcccccccccccC
Confidence 3455555543 22222334444 788999999999887 222222222222222 222343322 3 45
Q ss_pred CceEEEcCCCCccccccc-ccccccCceeccCCCcCccCCCC-CCCCCCCCEEecccccc----cccccccccCccccc-
Q 003802 401 KLFKLNLCNSRIKYLWKG-IKPLKELKFMNLSHSCNLIRTPD-FTGVPNLERLNLEGCTR----LLEVHQSVGTLKRLI- 473 (794)
Q Consensus 401 ~L~~L~L~~n~i~~l~~~-~~~l~~L~~L~L~~n~~~~~~~~-~~~l~~L~~L~l~~~~~----~~~~~~~~~~l~~L~- 473 (794)
+|+.|+|.+ .++.+++. |.+|++|+.|++++|.+....+. |.++.++..+.+..... .......|.++..|+
T Consensus 102 ~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~ 180 (329)
T 3sb4_A 102 TLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLET 180 (329)
T ss_dssp TCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEE
T ss_pred CCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccce
Confidence 566666655 55555433 55566666666665555444443 55555554444433111 000112233333333
Q ss_pred ccccccccccccccccc----CCCCCccEEEecCCCCCCCCCccccCCCCCcEEEccCccCcccCc-ccccCCCCCEEEc
Q 003802 474 LLNLKDCRNLVSFPKNV----CLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPP-SIVQLVNLKIFSL 548 (794)
Q Consensus 474 ~L~l~~n~~~~~~~~~~----~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~-~l~~l~~L~~L~l 548 (794)
.+.+.... .++..+ ....+++.+.+.++-...........+++|+.+++++|+++.+|. .+.+|++|+.+++
T Consensus 181 ~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l 257 (329)
T 3sb4_A 181 TIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKL 257 (329)
T ss_dssp EEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEEC
T ss_pred eEEecCCC---cHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEEC
Confidence 22222111 111111 123344455544421111111111235677777777776766654 3555666666666
Q ss_pred CCCCCCCCccccccchhccccCCCCCCCccccCCCCCCCCCCC-EEecCCCCCccCCCCccccCCCCCCeEeCCCCCCcc
Q 003802 549 HGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQ-TLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFS 627 (794)
Q Consensus 549 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~-~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 627 (794)
.+|-. ...-..|.++++|+ .+++.+ . ++...+..|.+|++|+.|++++|.++.
T Consensus 258 ~~ni~------------------------~I~~~aF~~~~~L~~~l~l~~-~-l~~I~~~aF~~c~~L~~l~l~~n~i~~ 311 (329)
T 3sb4_A 258 PHNLK------------------------TIGQRVFSNCGRLAGTLELPA-S-VTAIEFGAFMGCDNLRYVLATGDKITT 311 (329)
T ss_dssp CTTCC------------------------EECTTTTTTCTTCCEEEEECT-T-CCEECTTTTTTCTTEEEEEECSSCCCE
T ss_pred Ccccc------------------------eehHHHhhCChhccEEEEEcc-c-ceEEchhhhhCCccCCEEEeCCCccCc
Confidence 65421 11123366666666 666665 3 333345566666666666666666665
Q ss_pred Cch-hhhccCCCCEEe
Q 003802 628 LPS-SINQLLKLKILC 642 (794)
Q Consensus 628 lp~-~l~~l~~L~~L~ 642 (794)
++. .|.++++|+.++
T Consensus 312 I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 312 LGDELFGNGVPSKLIY 327 (329)
T ss_dssp ECTTTTCTTCCCCEEE
T ss_pred cchhhhcCCcchhhhc
Confidence 544 456666666654
No 133
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.46 E-value=1.7e-13 Score=130.25 Aligned_cols=34 Identities=21% Similarity=0.298 Sum_probs=13.2
Q ss_pred CceEEEcCCCCcccccccccccccCceeccCCCc
Q 003802 401 KLFKLNLCNSRIKYLWKGIKPLKELKFMNLSHSC 434 (794)
Q Consensus 401 ~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~n~ 434 (794)
+|++|++++|.++.+|..+..+++|++|+|++|.
T Consensus 32 ~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~ 65 (193)
T 2wfh_A 32 DVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNR 65 (193)
T ss_dssp TCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSC
T ss_pred CCCEEECCCCcCchhHHHhhcccCCCEEECCCCc
Confidence 3334444444333333333333333333333333
No 134
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.45 E-value=4e-13 Score=127.63 Aligned_cols=127 Identities=20% Similarity=0.215 Sum_probs=112.9
Q ss_pred eEEEcCCCCcccccccccccccCceeccCCCcCccCCCCCCCCCCCCEEecccccccccccccccCcccccccccccccc
Q 003802 403 FKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRN 482 (794)
Q Consensus 403 ~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~ 482 (794)
++++++++.++.+|..+. ++|++|++++|.+...+..|..+++|++|++++|.+.+..+..|.++++|++|++++|.+
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence 578899999999997754 689999999998876665599999999999999998888778899999999999999998
Q ss_pred ccccccccCCCCCccEEEecCCCCCCCCCccccCCCCCcEEEccCccCc
Q 003802 483 LVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIR 531 (794)
Q Consensus 483 ~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~ 531 (794)
.+..|..+..+++|++|+|++|.+....+..|..+++|+.|++++|.+.
T Consensus 91 ~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 91 RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 8887888999999999999999988776667999999999999999875
No 135
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.44 E-value=1.4e-12 Score=138.06 Aligned_cols=266 Identities=15% Similarity=0.125 Sum_probs=148.9
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhhccccceEEEEechhh-hcccChHHHHHHHHHHHh-------------ccc-----
Q 003802 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREV-SVTRGLVPLQEQLLSEVL-------------MER----- 76 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~-------------~~~----- 76 (794)
+++.|+|++|+|||+|+++++++... ..+|+...... ............+...+. ...
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~ 107 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINELNL---PYIYLDLRKFEERNYISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVI 107 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHTC---CEEEEEGGGGTTCSCCCHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEE
T ss_pred CcEEEECCCCCCHHHHHHHHHHhcCC---CEEEEEchhhccccCCCHHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEe
Confidence 59999999999999999999997653 25777632110 000122222222222211 000
Q ss_pred -c--c-------cccchhhhHHHHHHHhcCCeEEEEEcCCCChH-----HHHHHhcCCCCCCCCCEEEEEeCChhhhhh-
Q 003802 77 -D--L-------IIWDVHKGINLIRWRLCRKRVLVILDDVDQLE-----QLQALVGNHDWFGFGSRIIITSRDEHVLKS- 140 (794)
Q Consensus 77 -~--~-------~~~~~~~~~~~l~~~l~~~r~LlVlDd~~~~~-----~~~~l~~~~~~~~~gs~IlvTtR~~~v~~~- 140 (794)
. . .........+.+.+..+ ++.+|||||++... ++..+...+....++.++|+|+|.......
T Consensus 108 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~g~~~~~l~~~ 186 (357)
T 2fna_A 108 MGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRGVNLLPALAYAYDNLKRIKFIMSGSEMGLLYDY 186 (357)
T ss_dssp CSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTTCCCHHHHHHHHHHCTTEEEEEEESSHHHHHHH
T ss_pred cceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCchhHHHHHHHHHHcCCCeEEEEEcCchHHHHHH
Confidence 0 0 01122233333333222 49999999997643 121121111111246789999998653221
Q ss_pred ---------cC-c-CcEEEcCCCChHhHHHHHHhhccC-CCCCChhHHHHHHHHHHHhCCCchHHHHHhhhhcC-CChHH
Q 003802 141 ---------HG-V-TNTYKVRGLDYVEALQLFHLKVSN-GKQPTDYRVELSKYVVNYAGGLPLAIEVLGSFLCG-RSVEE 207 (794)
Q Consensus 141 ---------~~-~-~~~~~l~~L~~~ea~~lf~~~~~~-~~~~~~~~~~~~~~i~~~~~g~Plai~~~a~~L~~-~~~~~ 207 (794)
.. . ...+++.+|+.+|+.+++...+.. +..... ..+|++.++|+|+++..++..+.. .+...
T Consensus 187 l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~-----~~~i~~~t~G~P~~l~~~~~~~~~~~~~~~ 261 (357)
T 2fna_A 187 LRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKD-----YEVVYEKIGGIPGWLTYFGFIYLDNKNLDF 261 (357)
T ss_dssp TTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCC-----HHHHHHHHCSCHHHHHHHHHHHHHHCCHHH
T ss_pred HhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCc-----HHHHHHHhCCCHHHHHHHHHHHccccchHH
Confidence 11 1 257899999999999999875421 111111 178999999999999998876532 22323
Q ss_pred HHH-HHHHHHcCCChhHHHHHH-hhc--cCCChhhHhhhhhhcccccCCCHHHHHHhhh-hcC--CCc---hhhHHHHhh
Q 003802 208 WKS-ALNRLQEAPNEKVLKVLR-ISY--DGLDRRDKEIFLDIACFFKGKDEDRVRKKLD-SCG--FNS---DIGIRELLD 277 (794)
Q Consensus 208 w~~-~l~~l~~~~~~~~~~~l~-~sy--~~L~~~~~~~~~~~s~fp~~~~~~~l~~~~~-~~g--~~~---~~~l~~L~~ 277 (794)
|.. ..+... ..+...+. ..+ ..+++..+..+..+|. . . +...+..... ..| ... ..+++.|.+
T Consensus 262 ~~~~~~~~~~----~~~~~~l~~~~~~~~~l~~~~~~~l~~la~-g-~-~~~~l~~~~~~~~g~~~~~~~~~~~L~~L~~ 334 (357)
T 2fna_A 262 AINQTLEYAK----KLILKEFENFLHGREIARKRYLNIMRTLSK-C-G-KWSDVKRALELEEGIEISDSEIYNYLTQLTK 334 (357)
T ss_dssp HHHHHHHHHH----HHHHHHHHHHHTTCGGGHHHHHHHHHHHTT-C-B-CHHHHHHHHHHHHCSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH----HHHHHHHHHHhhccccccHHHHHHHHHHHc-C-C-CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Confidence 321 111110 11111111 111 1678888999998888 2 2 5555543321 123 221 456899999
Q ss_pred cccceeecCeeh-HHHHHHHH
Q 003802 278 KSLITIVNNKLW-MHDLLQEM 297 (794)
Q Consensus 278 ~~ll~~~~~~~~-mh~li~~~ 297 (794)
.+++...++.|+ .|++++++
T Consensus 335 ~gli~~~~~~y~f~~~~~~~~ 355 (357)
T 2fna_A 335 HSWIIKEGEKYCPSEPLISLA 355 (357)
T ss_dssp TTSEEESSSCEEESSHHHHHH
T ss_pred CCCEEecCCEEEecCHHHHHh
Confidence 999988766666 57887765
No 136
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.43 E-value=2.4e-12 Score=138.97 Aligned_cols=261 Identities=15% Similarity=0.131 Sum_probs=150.2
Q ss_pred CeEEEEE--EccCCCcHHHHHHHHHHHhhcc-----cc-ceEEEEechhhhcccChHHHHHHHHHHHhccccccccchhh
Q 003802 14 DVRFIGI--CGMGGIGKTTLAKVLYNTLKDQ-----FE-ASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHK 85 (794)
Q Consensus 14 ~~~vi~i--~G~~GvGKTtLa~~v~~~~~~~-----f~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 85 (794)
..+.+.| +|++|+|||+||+++++..... +. .++|+. +........+..+++..+.........+..+
T Consensus 49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 124 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVN----AFNAPNLYTILSLIVRQTGYPIQVRGAPALD 124 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEE----GGGCCSHHHHHHHHHHHHTCCCCCTTCCHHH
T ss_pred CCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEE----CCCCCCHHHHHHHHHHHhCCCCCCCCCCHHH
Confidence 3456777 9999999999999999876543 22 245665 3334566677788887764332211223344
Q ss_pred hHHHHHHHhc--CCeEEEEEcCCCChH--------HHHHHhcCC---CCCC--CCCEEEEEeCChhhhhhc--------C
Q 003802 86 GINLIRWRLC--RKRVLVILDDVDQLE--------QLQALVGNH---DWFG--FGSRIIITSRDEHVLKSH--------G 142 (794)
Q Consensus 86 ~~~~l~~~l~--~~r~LlVlDd~~~~~--------~~~~l~~~~---~~~~--~gs~IlvTtR~~~v~~~~--------~ 142 (794)
....+.+.+. +++++|||||++... .+..+...+ +..+ ....||+||+...+...+ .
T Consensus 125 ~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~ 204 (412)
T 1w5s_A 125 ILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVES 204 (412)
T ss_dssp HHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHT
T ss_pred HHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhh
Confidence 4555665554 689999999997643 233332221 1011 344577788754432111 1
Q ss_pred -cCcEEEcCCCChHhHHHHHHhhccCCCCCChhHHHHHHHHHHHhC------CCchHHHHHhhhhc------C---CChH
Q 003802 143 -VTNTYKVRGLDYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAG------GLPLAIEVLGSFLC------G---RSVE 206 (794)
Q Consensus 143 -~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~------g~Plai~~~a~~L~------~---~~~~ 206 (794)
....+++.+++.++++++|..++...........+....|++.++ |.|..+..++.... . -+..
T Consensus 205 ~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~ 284 (412)
T 1w5s_A 205 QIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSED 284 (412)
T ss_dssp TCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHH
T ss_pred hcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHH
Confidence 122499999999999999976542100111122356788999999 99976665543211 1 1233
Q ss_pred HHHHHHHHHHcCCChhHHHHHHhhccCCChhhHhhhhhhccccc----CCCHHHHHH----hh-hhcCCCc------hhh
Q 003802 207 EWKSALNRLQEAPNEKVLKVLRISYDGLDRRDKEIFLDIACFFK----GKDEDRVRK----KL-DSCGFNS------DIG 271 (794)
Q Consensus 207 ~w~~~l~~l~~~~~~~~~~~l~~sy~~L~~~~~~~~~~~s~fp~----~~~~~~l~~----~~-~~~g~~~------~~~ 271 (794)
.+..+..... . ...+...+..||.+.+.++..++.+.. .++...+.. +. ...|..+ ..+
T Consensus 285 ~v~~~~~~~~---~---~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (412)
T 1w5s_A 285 LVRKAVSENE---A---ASIQTHELEALSIHELIILRLIAEATLGGMEWINAGLLRQRYEDASLTMYNVKPRGYTQYHIY 358 (412)
T ss_dssp HHHHHHHHC------------CCSSSSSCHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHHHSCCCCCCHHHHHHH
T ss_pred HHHHHHHHHh---c---cchHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhhcCCCCCCHHHHHHH
Confidence 3333332211 0 233455678899999999888886531 223333222 22 2223221 345
Q ss_pred HHHHhhcccceee
Q 003802 272 IRELLDKSLITIV 284 (794)
Q Consensus 272 l~~L~~~~ll~~~ 284 (794)
++.|...+++...
T Consensus 359 l~~L~~~gli~~~ 371 (412)
T 1w5s_A 359 LKHLTSLGLVDAK 371 (412)
T ss_dssp HHHHHHTTSEEEE
T ss_pred HHHHHhCCCEEee
Confidence 8899999999775
No 137
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.41 E-value=1.2e-12 Score=122.72 Aligned_cols=127 Identities=13% Similarity=0.037 Sum_probs=71.1
Q ss_pred eEEEcCCCCcccccccccccccCceeccCCCcCccCCCC-CCCCCCCCEEecccccccccccccccCccccccccccccc
Q 003802 403 FKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLIRTPD-FTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCR 481 (794)
Q Consensus 403 ~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~ 481 (794)
+.++++++.++.+|..+. ++|++|++++|.+...++. +..+++|++|++++|.+.+..+..+..+++|++|++++|.
T Consensus 10 ~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 87 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87 (177)
T ss_dssp TEEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence 455666666666654332 4666666666655544443 4556666666666665544444445556666666666655
Q ss_pred cccccccccCCCCCccEEEecCCCCCCCCCccccCCCCCcEEEccCccCc
Q 003802 482 NLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIR 531 (794)
Q Consensus 482 ~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~ 531 (794)
+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 88 LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 54444444555666666666666555444444455666666666666554
No 138
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.39 E-value=3.4e-13 Score=126.31 Aligned_cols=128 Identities=13% Similarity=0.087 Sum_probs=67.3
Q ss_pred CCCCceEEEcCCCCcccccccccccc-cCceeccCCCcCccCCCCCCCCCCCCEEecccccccccccccccCcccccccc
Q 003802 398 RPEKLFKLNLCNSRIKYLWKGIKPLK-ELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLN 476 (794)
Q Consensus 398 ~~~~L~~L~L~~n~i~~l~~~~~~l~-~L~~L~L~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 476 (794)
.+.+|++|++++|.++.+|. +..+. +|++|++++|.+... +.+..+++|++|++++|
T Consensus 17 ~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N-------------------- 74 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNN-------------------- 74 (176)
T ss_dssp CTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSS--------------------
T ss_pred CcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCC--------------------
Confidence 34556666666666665543 33322 555555555544433 33444445555555444
Q ss_pred ccccccccccccccCCCCCccEEEecCCCCCCCCCc--cccCCCCCcEEEccCccCcccCcc----cccCCCCCEEEcCC
Q 003802 477 LKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQ--DLGEVECLEELDVGGTAIRQIPPS----IVQLVNLKIFSLHG 550 (794)
Q Consensus 477 l~~n~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~--~~~~l~~L~~L~l~~~~l~~l~~~----l~~l~~L~~L~l~~ 550 (794)
.+.+..+..+..+++|++|++++|.+. .+|. .+..+++|+.|++++|.++.+|.. +..+++|+.|++++
T Consensus 75 ----~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~ 149 (176)
T 1a9n_A 75 ----RICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQK 149 (176)
T ss_dssp ----CCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEE
T ss_pred ----cccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCc
Confidence 433222222245555555555555442 2333 455666666666666666666553 56666666666666
Q ss_pred CC
Q 003802 551 CK 552 (794)
Q Consensus 551 ~~ 552 (794)
|.
T Consensus 150 n~ 151 (176)
T 1a9n_A 150 VK 151 (176)
T ss_dssp CC
T ss_pred CC
Confidence 55
No 139
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.39 E-value=3.5e-13 Score=126.22 Aligned_cols=126 Identities=15% Similarity=0.157 Sum_probs=94.4
Q ss_pred ccCcceeeeecCCCCCCCCCCCCC-CceEEEcCCCCcccccccccccccCceeccCCCcCccCCCC-CCCCCCCCEEecc
Q 003802 377 SNNLRYLKWHEYPFNSLPVSFRPE-KLFKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLIRTPD-FTGVPNLERLNLE 454 (794)
Q Consensus 377 ~~~l~~L~~~~~~~~~l~~~~~~~-~L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~n~~~~~~~~-~~~l~~L~~L~l~ 454 (794)
..+++.|++.++.+..++...... +|++|++++|.++.+ ..+..+++|++|++++|.+...++. +..+++|++|+++
T Consensus 18 ~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 96 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILT 96 (176)
T ss_dssp TTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECC
T ss_pred cCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECC
Confidence 457899999999999887655544 999999999999998 6799999999999999998877666 4788888999888
Q ss_pred cccccccccc--cccCccccccccccccccccccccc----cCCCCCccEEEecCCC
Q 003802 455 GCTRLLEVHQ--SVGTLKRLILLNLKDCRNLVSFPKN----VCLMKSLKILCLCGCL 505 (794)
Q Consensus 455 ~~~~~~~~~~--~~~~l~~L~~L~l~~n~~~~~~~~~----~~~l~~L~~L~L~~~~ 505 (794)
+|.+ +.+|. .+..+++|++|++++|.+. .+|.. +..+++|++|++++|.
T Consensus 97 ~N~i-~~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 97 NNSL-VELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp SCCC-CCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECC
T ss_pred CCcC-CcchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCC
Confidence 8875 44454 5666677777777776643 33432 4455555555555543
No 140
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.36 E-value=3.6e-12 Score=119.52 Aligned_cols=130 Identities=18% Similarity=0.125 Sum_probs=106.4
Q ss_pred ceeeeecCCCCCCCCCCCCCCceEEEcCCCCccccccc-ccccccCceeccCCCcCccCCCC-CCCCCCCCEEecccccc
Q 003802 381 RYLKWHEYPFNSLPVSFRPEKLFKLNLCNSRIKYLWKG-IKPLKELKFMNLSHSCNLIRTPD-FTGVPNLERLNLEGCTR 458 (794)
Q Consensus 381 ~~L~~~~~~~~~l~~~~~~~~L~~L~L~~n~i~~l~~~-~~~l~~L~~L~L~~n~~~~~~~~-~~~l~~L~~L~l~~~~~ 458 (794)
+.+++.++.+..+|..+ +++|++|++++|.++.++.. +..+++|++|++++|.+...++. |..+++|++|++++|.+
T Consensus 10 ~~l~~~~~~l~~~p~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l 88 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGI-PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKL 88 (177)
T ss_dssp TEEECCSSCCSSCCTTC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEecCCCCccCCCCC-CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCc
Confidence 45566666666666544 36899999999999988765 78899999999999988877766 78999999999999988
Q ss_pred cccccccccCccccccccccccccccccccccCCCCCccEEEecCCCCCCCCC
Q 003802 459 LLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLP 511 (794)
Q Consensus 459 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~ 511 (794)
.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+
T Consensus 89 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 89 QSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 87766678899999999999998775555556889999999999998876543
No 141
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.35 E-value=1.9e-12 Score=134.78 Aligned_cols=61 Identities=11% Similarity=0.098 Sum_probs=28.3
Q ss_pred CCCCCCCCEEecCCCCCccCCCCccccCCCCCC-eEeCCCCCCccCc-hhhhccCCCCEEecCCCc
Q 003802 584 FTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLE-AIDLSGNNFFSLP-SSINQLLKLKILCLEKCR 647 (794)
Q Consensus 584 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~-~L~L~~n~l~~lp-~~l~~l~~L~~L~L~~n~ 647 (794)
|.++++|+.|++.+| ++...+..|.++++|+ .+++.+ .++.++ ..|.+|++|+.|++++|.
T Consensus 246 F~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~ 308 (329)
T 3sb4_A 246 FAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDK 308 (329)
T ss_dssp TTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSC
T ss_pred hhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCc
Confidence 445555555555544 2223334445555555 555544 444432 234455555555554443
No 142
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.34 E-value=1.1e-10 Score=124.54 Aligned_cols=264 Identities=14% Similarity=0.054 Sum_probs=157.2
Q ss_pred hhhHhHhc--CCCCeEEEEEEccCCCcHHHHHHHHHHHhhcc--------ccceEEEEechhhhccc-ChHHHHHHHHHH
Q 003802 3 KMNGYLEA--GLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ--------FEASSFLANVREVSVTR-GLVPLQEQLLSE 71 (794)
Q Consensus 3 ~l~~~l~~--~~~~~~vi~i~G~~GvGKTtLa~~v~~~~~~~--------f~~~~~~~~~~~~~~~~-~~~~~~~~i~~~ 71 (794)
++.+++.. .....+.+.|+|++|+|||++|+.+++..... ....+|+. +.... ....+..+++..
T Consensus 31 ~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~----~~~~~~~~~~~~~~l~~~ 106 (384)
T 2qby_B 31 DAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVN----CREVGGTPQAVLSSLAGK 106 (384)
T ss_dssp HHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEE----HHHHCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEE----CccCCCCHHHHHHHHHHH
Confidence 44444443 22345689999999999999999999976443 23345665 33334 556677777776
Q ss_pred Hhccccc-cccchhhhHHHHHHHhcCCeEEEEEcCCCChHH-------HHHHhcCCCCCCCCCEEEEEeCChhh----hh
Q 003802 72 VLMERDL-IIWDVHKGINLIRWRLCRKRVLVILDDVDQLEQ-------LQALVGNHDWFGFGSRIIITSRDEHV----LK 139 (794)
Q Consensus 72 ~~~~~~~-~~~~~~~~~~~l~~~l~~~r~LlVlDd~~~~~~-------~~~l~~~~~~~~~gs~IlvTtR~~~v----~~ 139 (794)
+.+.... ...+.......+.+.++.++.+|||||++.... +..+.... .+..||+||+.... ..
T Consensus 107 l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~----~~~~iI~~t~~~~~~~~l~~ 182 (384)
T 2qby_B 107 LTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD----ANISVIMISNDINVRDYMEP 182 (384)
T ss_dssp HHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS----SCEEEEEECSSTTTTTTSCH
T ss_pred hcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC----cceEEEEEECCCchHhhhCH
Confidence 5332211 112334556677777777666999999976543 33333332 57788889886522 11
Q ss_pred hc--CcCcEEEcCCCChHhHHHHHHhhcc---CCCCCChhHHHHHHHHHHHhC---CCchHH-HHHhhh--hc-C---CC
Q 003802 140 SH--GVTNTYKVRGLDYVEALQLFHLKVS---NGKQPTDYRVELSKYVVNYAG---GLPLAI-EVLGSF--LC-G---RS 204 (794)
Q Consensus 140 ~~--~~~~~~~l~~L~~~ea~~lf~~~~~---~~~~~~~~~~~~~~~i~~~~~---g~Plai-~~~a~~--L~-~---~~ 204 (794)
.. .....+++++++.++..+++..++. ...... .+..+.+++.++ |.|..+ ..+-.+ ++ + -+
T Consensus 183 ~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~~~~i~ 259 (384)
T 2qby_B 183 RVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYD---DEILSYIAAISAKEHGDARKAVNLLFRAAQLASGGGIIR 259 (384)
T ss_dssp HHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCC---SHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTSSSCCC
T ss_pred HHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcC---HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCccC
Confidence 11 1123899999999999999998752 222222 245667777777 888733 332222 11 1 35
Q ss_pred hHHHHHHHHHHHcCCChhHHHHHHhhccCCChhhHhhhhhhcccccCCCH-HHHHHhhhhcCCCc------hhhHHHHhh
Q 003802 205 VEEWKSALNRLQEAPNEKVLKVLRISYDGLDRRDKEIFLDIACFFKGKDE-DRVRKKLDSCGFNS------DIGIRELLD 277 (794)
Q Consensus 205 ~~~w~~~l~~l~~~~~~~~~~~l~~sy~~L~~~~~~~~~~~s~fp~~~~~-~~l~~~~~~~g~~~------~~~l~~L~~ 277 (794)
.+.++.+++... ...+..++..++.+.+..+..++....+-+. +....+....|..+ ..+++.|..
T Consensus 260 ~~~v~~~~~~~~-------~~~~~~~~~~l~~~~~~~l~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~L~~ 332 (384)
T 2qby_B 260 KEHVDKAIVDYE-------QERLIEAVKALPFHYKLALRSLIESEDVMSAHKMYTDLCNKFKQKPLSYRRFSDIISELDM 332 (384)
T ss_dssp HHHHHHHHHHHH-------HHHHHHHHHSSCHHHHHHHHHHHTCCBHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-------cchHHHHHHcCCHHHHHHHHHHHHhcccChHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh
Confidence 666766666542 2345666788888888777666651110112 12333333333222 345788899
Q ss_pred cccceee
Q 003802 278 KSLITIV 284 (794)
Q Consensus 278 ~~ll~~~ 284 (794)
.+++...
T Consensus 333 ~gli~~~ 339 (384)
T 2qby_B 333 FGIVKIR 339 (384)
T ss_dssp TTSEEEE
T ss_pred CCCEEEE
Confidence 9998875
No 143
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.30 E-value=6.4e-11 Score=125.83 Aligned_cols=123 Identities=11% Similarity=-0.030 Sum_probs=54.7
Q ss_pred CceEEEcCCCCcccccc-cccccccCceeccCCCcCccCCCC-CCCCCCCCEEecccccccccccccccCcccccccccc
Q 003802 401 KLFKLNLCNSRIKYLWK-GIKPLKELKFMNLSHSCNLIRTPD-FTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLK 478 (794)
Q Consensus 401 ~L~~L~L~~n~i~~l~~-~~~~l~~L~~L~L~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 478 (794)
+|+.+.+.. .++.++. .|.++++|+.+++++|.+...... |. +.+|+.+.+..+ +...-...|.++++|+.+++.
T Consensus 158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~ 234 (401)
T 4fdw_A 158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIP 234 (401)
T ss_dssp CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECC
T ss_pred CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecC
Confidence 455555543 4444432 355555555555555544444443 33 355555555432 222223445555555555554
Q ss_pred ccccccccccccCCCCCccEEEecCCCCCCCCCccccCCCCCcEEEccCcc
Q 003802 479 DCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTA 529 (794)
Q Consensus 479 ~n~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 529 (794)
.+ +...-...|.+ .+|+.+.+.+ .+...-...|.++++|+.+++.++.
T Consensus 235 ~~-l~~I~~~aF~~-~~L~~i~lp~-~i~~I~~~aF~~c~~L~~l~l~~~~ 282 (401)
T 4fdw_A 235 EN-VSTIGQEAFRE-SGITTVKLPN-GVTNIASRAFYYCPELAEVTTYGST 282 (401)
T ss_dssp TT-CCEECTTTTTT-CCCSEEEEET-TCCEECTTTTTTCTTCCEEEEESSC
T ss_pred CC-ccCcccccccc-CCccEEEeCC-CccEEChhHhhCCCCCCEEEeCCcc
Confidence 42 22222222333 4455555432 2222223344444445555444433
No 144
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.30 E-value=1.9e-14 Score=137.85 Aligned_cols=147 Identities=19% Similarity=0.199 Sum_probs=81.2
Q ss_pred cCcccccccccccccccccccc------ccCCCCCccEEEecCCCCCCCCCccccCCCCCcEEEccCccCcccCcccccC
Q 003802 467 GTLKRLILLNLKDCRNLVSFPK------NVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPPSIVQL 540 (794)
Q Consensus 467 ~~l~~L~~L~l~~n~~~~~~~~------~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~l~~l 540 (794)
.....++.++++.+.+.+..|. .+..+++|++|++++|.+.+ +| .+.++++|+.|++++|.++.+|..+..+
T Consensus 15 ~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~ 92 (198)
T 1ds9_A 15 EERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKKIENLDAVA 92 (198)
T ss_dssp HHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECSCSSHHHHH
T ss_pred HhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcccccchhhcC
Confidence 3445555566665555554443 55666666666666665554 44 5666666666666666666666555555
Q ss_pred CCCCEEEcCCCCCCCCccccccchhccccCCCCCCCccccCCCCCCCCCCCEEecCCCCCccCCCC--ccccCCCCCCeE
Q 003802 541 VNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIP--SDIGSLFSLEAI 618 (794)
Q Consensus 541 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~--~~~~~l~~L~~L 618 (794)
++|+.|++++|.... ++.+..+++|+.|++++|.+.. ++ ..+..+++|++|
T Consensus 93 ~~L~~L~L~~N~l~~-------------------------l~~~~~l~~L~~L~l~~N~i~~--~~~~~~l~~l~~L~~L 145 (198)
T 1ds9_A 93 DTLEELWISYNQIAS-------------------------LSGIEKLVNLRVLYMSNNKITN--WGEIDKLAALDKLEDL 145 (198)
T ss_dssp HHCSEEEEEEEECCC-------------------------HHHHHHHHHSSEEEESEEECCC--HHHHHHHTTTTTCSEE
T ss_pred CcCCEEECcCCcCCc-------------------------CCccccCCCCCEEECCCCcCCc--hhHHHHHhcCCCCCEE
Confidence 666666665554110 1113344556666666665322 22 245566666666
Q ss_pred eCCCCCCccC-ch----------hhhccCCCCEEe
Q 003802 619 DLSGNNFFSL-PS----------SINQLLKLKILC 642 (794)
Q Consensus 619 ~L~~n~l~~l-p~----------~l~~l~~L~~L~ 642 (794)
++++|.++.. |. .+..+++|+.|+
T Consensus 146 ~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 146 LLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp EECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred EecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 6666665532 21 256666666665
No 145
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.29 E-value=2.3e-10 Score=122.23 Aligned_cols=234 Identities=15% Similarity=0.099 Sum_probs=124.8
Q ss_pred ccccccCceeccCCCcCccCCCC-CCCCCCCCEEecccccccccccccccCccccccccccccccccccccccCCCCCcc
Q 003802 419 IKPLKELKFMNLSHSCNLIRTPD-FTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLK 497 (794)
Q Consensus 419 ~~~l~~L~~L~L~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~ 497 (794)
|.++++|+.+.+.++. ...... |.++++|+.+.+..+ ........+.++..|+.+.+..+. ..+........+|+
T Consensus 158 F~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~--~~i~~~~~~~~~l~ 233 (394)
T 4fs7_A 158 FATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSL--YYLGDFALSKTGVK 233 (394)
T ss_dssp TTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTC--CEECTTTTTTCCCC
T ss_pred hcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCc--eEeehhhcccCCCc
Confidence 5555556666555442 222222 555555655555443 222222345555555555554322 11222223344555
Q ss_pred EEEecCCCCCCCCCccccCCCCCcEEEccCccCcccCcccccCCCCCEEEcCCCCCCCCccccccchhccccCCCCCCCc
Q 003802 498 ILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPPSIVQLVNLKIFSLHGCKGQPPKILSSNFFLSLLLPNKNSDSM 577 (794)
Q Consensus 498 ~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 577 (794)
.+.+.. .....-...+..+.+|+.+.+..+...--...+..+..++.+......
T Consensus 234 ~i~ip~-~~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~------------------------- 287 (394)
T 4fs7_A 234 NIIIPD-SFTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVI------------------------- 287 (394)
T ss_dssp EEEECT-TCCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSE-------------------------
T ss_pred eEEECC-CceecccccccccccceeEEcCCCcceeeccccccccccceeccCcee-------------------------
Confidence 555543 222222234555556666655544332222334445555555443221
Q ss_pred cccCCCCCCCCCCCEEecCCCCCccCCCCccccCCCCCCeEeCCCCCCccCc-hhhhccCCCCEEecCCCcCCCCCCCCC
Q 003802 578 CLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLP-SSINQLLKLKILCLEKCRNLKSLPELP 656 (794)
Q Consensus 578 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp-~~l~~l~~L~~L~L~~n~~~~~~~~~~ 656 (794)
..-..+..+.+|+.+.+..+ ++......|.++.+|+.++|..+ ++.++ ..|.+|.+|+.+++..+ ++.++.
T Consensus 288 -i~~~~F~~~~~L~~i~l~~~--i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~--l~~I~~-- 359 (394)
T 4fs7_A 288 -VPEKTFYGCSSLTEVKLLDS--VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS--LRKIGA-- 359 (394)
T ss_dssp -ECTTTTTTCTTCCEEEECTT--CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT--CCEECT--
T ss_pred -eccccccccccccccccccc--cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc--ccEehH--
Confidence 11234677888888888765 33344566788888888888643 66664 45788888888888654 333321
Q ss_pred ccccccccccccccccccccccccCCCCceEEEeCCCCchhh
Q 003802 657 PEIVFVGAEDCTSLETISAFAKLSRSPNIALNFLNCFKLVED 698 (794)
Q Consensus 657 ~~L~~L~l~~~~~L~~l~~~~n~~~~~~~~~~~~~~~~L~~L 698 (794)
-.+.+|++|+.+.+..+... ....|.+|++|+.+
T Consensus 360 -----~aF~~C~~L~~i~lp~~~~~---~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 360 -----NAFQGCINLKKVELPKRLEQ---YRYDFEDTTKFKWI 393 (394)
T ss_dssp -----TTBTTCTTCCEEEEEGGGGG---GGGGBCTTCEEEEE
T ss_pred -----HHhhCCCCCCEEEECCCCEE---hhheecCCCCCcEE
Confidence 24678888888877655222 22357788888754
No 146
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.24 E-value=1.6e-13 Score=131.35 Aligned_cols=133 Identities=18% Similarity=0.158 Sum_probs=93.4
Q ss_pred CcccccccccccccCceeccCCCcCccCCCCCCCCCCCCEEecccccccccccccccCcccccccccccccccccccccc
Q 003802 411 RIKYLWKGIKPLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNV 490 (794)
Q Consensus 411 ~i~~l~~~~~~l~~L~~L~L~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~ 490 (794)
.++.+|..+..+++|++|++++|.+.. .|.+..+++|++|++++|.+. .+|..+..+++|++|++++|.+.+ +| .+
T Consensus 36 ~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~ 111 (198)
T 1ds9_A 36 PIEKMDATLSTLKACKHLALSTNNIEK-ISSLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GI 111 (198)
T ss_dssp TCCCCHHHHHHTTTCSEEECSEEEESC-CCCHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HH
T ss_pred cHhhhhHHHhcCCCCCEEECCCCCCcc-ccccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-cc
Confidence 455566667777778888887776655 336667777888888877654 566666677788888888876544 44 46
Q ss_pred CCCCCccEEEecCCCCCCCCC-ccccCCCCCcEEEccCccCcccCc-----------ccccCCCCCEEE
Q 003802 491 CLMKSLKILCLCGCLKLEKLP-QDLGEVECLEELDVGGTAIRQIPP-----------SIVQLVNLKIFS 547 (794)
Q Consensus 491 ~~l~~L~~L~L~~~~~~~~~~-~~~~~l~~L~~L~l~~~~l~~l~~-----------~l~~l~~L~~L~ 547 (794)
..+++|++|++++|.+....+ ..+..+++|++|++++|.+...++ .+..+++|+.|+
T Consensus 112 ~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 112 EKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred ccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 777788888888877665322 357778888888888887764322 267788888886
No 147
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.20 E-value=2.6e-10 Score=121.84 Aligned_cols=271 Identities=14% Similarity=0.075 Sum_probs=147.8
Q ss_pred hhhHhHhcC--CCCeEEEEEEccCCCcHHHHHHHHHHHhhccc---cceEEEEechhhhcccChHHHHHHHHHHHhcccc
Q 003802 3 KMNGYLEAG--LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQF---EASSFLANVREVSVTRGLVPLQEQLLSEVLMERD 77 (794)
Q Consensus 3 ~l~~~l~~~--~~~~~vi~i~G~~GvGKTtLa~~v~~~~~~~f---~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 77 (794)
++.+++... ....+.+.|+|++|+||||||+.+++.....+ ...+|+. +............+...+.....
T Consensus 31 ~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~----~~~~~~~~~~~~~i~~~l~~~~~ 106 (386)
T 2qby_A 31 KIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYIN----TRQIDTPYRVLADLLESLDVKVP 106 (386)
T ss_dssp HHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEE----HHHHCSHHHHHHHHTTTTSCCCC
T ss_pred HHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEE----CCCCCCHHHHHHHHHHHhCCCCC
Confidence 344444431 23457899999999999999999999776553 2345665 33333445555565555422211
Q ss_pred ccccchhhhHHHHHHHhc--CCeEEEEEcCCCChH------HHHHHhcCCCC-CCCCCEEEEEeCChhhhhhcC------
Q 003802 78 LIIWDVHKGINLIRWRLC--RKRVLVILDDVDQLE------QLQALVGNHDW-FGFGSRIIITSRDEHVLKSHG------ 142 (794)
Q Consensus 78 ~~~~~~~~~~~~l~~~l~--~~r~LlVlDd~~~~~------~~~~l~~~~~~-~~~gs~IlvTtR~~~v~~~~~------ 142 (794)
....+..+....+.+.++ +++.+||+|+++... .+..+...... ...+..+|+||+.......+.
T Consensus 107 ~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~~~~~~~~r 186 (386)
T 2qby_A 107 FTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDLLDPRVKSS 186 (386)
T ss_dssp SSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGGGCTTHHHHT
T ss_pred CCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHhhhCHHHhcc
Confidence 111223344455555554 458999999986543 23333222210 133566788887654322221
Q ss_pred -cCcEEEcCCCChHhHHHHHHhhccCCCCCChhHHHHHHHHHHHhC---CCchHHHHHhhhhc------C---CChHHHH
Q 003802 143 -VTNTYKVRGLDYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAG---GLPLAIEVLGSFLC------G---RSVEEWK 209 (794)
Q Consensus 143 -~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~---g~Plai~~~a~~L~------~---~~~~~w~ 209 (794)
....+++++++.++..+++...+...........+..+.+++.++ |.|..+..+..... + -+.+.++
T Consensus 187 ~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~ 266 (386)
T 2qby_A 187 LSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDTKVKEEYVY 266 (386)
T ss_dssp TTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHH
T ss_pred CCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCccCHHHHH
Confidence 114799999999999999988652111111122345666777776 99985443332211 1 1445555
Q ss_pred HHHHHHHcCCChhHHHHHHhhccCCChhhHhhhhhhccccc-C---CCHHHH----HHhhhhcCCCc------hhhHHHH
Q 003802 210 SALNRLQEAPNEKVLKVLRISYDGLDRRDKEIFLDIACFFK-G---KDEDRV----RKKLDSCGFNS------DIGIREL 275 (794)
Q Consensus 210 ~~l~~l~~~~~~~~~~~l~~sy~~L~~~~~~~~~~~s~fp~-~---~~~~~l----~~~~~~~g~~~------~~~l~~L 275 (794)
.+++... ...+.-.+..++...+..+..++...+ + +....+ ..+....|..+ ..+++.|
T Consensus 267 ~a~~~~~-------~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~l~~L 339 (386)
T 2qby_A 267 MAKEEIE-------RDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKLGVEAVTQRRVSDIINEL 339 (386)
T ss_dssp HHHHHHH-------HHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHHTCCCCCHHHHHHHHHHH
T ss_pred HHHHHHh-------hchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Confidence 5554432 234555677788887776666553211 1 122222 22222223221 3457788
Q ss_pred hhcccceee
Q 003802 276 LDKSLITIV 284 (794)
Q Consensus 276 ~~~~ll~~~ 284 (794)
...++++..
T Consensus 340 ~~~gli~~~ 348 (386)
T 2qby_A 340 DMVGILTAK 348 (386)
T ss_dssp HHHTSEEEE
T ss_pred HhCCCEEEE
Confidence 888888764
No 148
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.19 E-value=5.5e-11 Score=110.22 Aligned_cols=103 Identities=17% Similarity=0.113 Sum_probs=50.6
Q ss_pred ceEEEcCCCCcccccccccccccCceeccCCCcCccCCCC-CCCCCCCCEEecccccccccccccccCcccccccccccc
Q 003802 402 LFKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLIRTPD-FTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDC 480 (794)
Q Consensus 402 L~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n 480 (794)
.+++++++|.++.+|..+. ++|++|+|++|.+....+. |.++++|++|+|++|.+.+..+..|..+++|++|++++|
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 3456666666666665442 5555666665555554443 555555555555555444333333444444444444444
Q ss_pred ccccccccccCCCCCccEEEecCCCC
Q 003802 481 RNLVSFPKNVCLMKSLKILCLCGCLK 506 (794)
Q Consensus 481 ~~~~~~~~~~~~l~~L~~L~L~~~~~ 506 (794)
.+.+..+..+..+++|++|+|++|.+
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCC
Confidence 43333333344444444444444433
No 149
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.19 E-value=5.8e-10 Score=119.17 Aligned_cols=268 Identities=13% Similarity=0.096 Sum_probs=151.4
Q ss_pred hhhHhHhcC--CCCeEEEEEEccCCCcHHHHHHHHHHHhhccc------cceEEEEechhhhcccChHHHHHHHHHHHhc
Q 003802 3 KMNGYLEAG--LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQF------EASSFLANVREVSVTRGLVPLQEQLLSEVLM 74 (794)
Q Consensus 3 ~l~~~l~~~--~~~~~vi~i~G~~GvGKTtLa~~v~~~~~~~f------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 74 (794)
++.+++... ....+.+.|+|++|+|||++|+.+++.....+ ...+|+. +....+...+...++..+..
T Consensus 30 ~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~----~~~~~~~~~~~~~l~~~l~~ 105 (387)
T 2v1u_A 30 RLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVN----ARHRETPYRVASAIAEAVGV 105 (387)
T ss_dssp HHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEE----TTTSCSHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEE----CCcCCCHHHHHHHHHHHhCC
Confidence 445555332 34467899999999999999999998764431 2345555 33444556677777777643
Q ss_pred cccccccchhhhHHHHHHHh--cCCeEEEEEcCCCChHH-------HHHHhcCCCCC--CCCCEEEEEeCChhhhhh---
Q 003802 75 ERDLIIWDVHKGINLIRWRL--CRKRVLVILDDVDQLEQ-------LQALVGNHDWF--GFGSRIIITSRDEHVLKS--- 140 (794)
Q Consensus 75 ~~~~~~~~~~~~~~~l~~~l--~~~r~LlVlDd~~~~~~-------~~~l~~~~~~~--~~gs~IlvTtR~~~v~~~--- 140 (794)
.......+..+....+.+.+ .+++.+||||+++.... +..+....... ..+..+|.||+.......
T Consensus 106 ~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~~~~~~l~~ 185 (387)
T 2v1u_A 106 RVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSLGFVENLEP 185 (387)
T ss_dssp CCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCSTTSSSSCH
T ss_pred CCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCCchHhhhCH
Confidence 32222223344455666665 35689999999977642 22222221111 345677777776422111
Q ss_pred --cCc--CcEEEcCCCChHhHHHHHHhhcc---CCCCCChhHHHHHHHHHHHhC---CCchHHHHHhhhh---c---C--
Q 003802 141 --HGV--TNTYKVRGLDYVEALQLFHLKVS---NGKQPTDYRVELSKYVVNYAG---GLPLAIEVLGSFL---C---G-- 202 (794)
Q Consensus 141 --~~~--~~~~~l~~L~~~ea~~lf~~~~~---~~~~~~~~~~~~~~~i~~~~~---g~Plai~~~a~~L---~---~-- 202 (794)
... ...+.+++++.++..+++...+. ..... ..+..+.+++.++ |.|..+..+.... . +
T Consensus 186 ~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~ 262 (387)
T 2v1u_A 186 RVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVL---DPDVVPLCAALAAREHGDARRALDLLRVAGEIAERRREE 262 (387)
T ss_dssp HHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTB---CSSHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHTTCS
T ss_pred HHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCC---CHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHcCCC
Confidence 111 14789999999999999988752 22222 2245667778887 9995433322211 1 1
Q ss_pred -CChHHHHHHHHHHHcCCChhHHHHHHhhccCCChhhHhhhhhhcccccCC---CHH----HHHHhhhhcCCCc------
Q 003802 203 -RSVEEWKSALNRLQEAPNEKVLKVLRISYDGLDRRDKEIFLDIACFFKGK---DED----RVRKKLDSCGFNS------ 268 (794)
Q Consensus 203 -~~~~~w~~~l~~l~~~~~~~~~~~l~~sy~~L~~~~~~~~~~~s~fp~~~---~~~----~l~~~~~~~g~~~------ 268 (794)
-+.+.++.+++... ...+..++..++.+.+..+..++....+. ... .........|..+
T Consensus 263 ~i~~~~v~~a~~~~~-------~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (387)
T 2v1u_A 263 RVRREHVYSARAEIE-------RDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKELTSTLGLEHVTLRRV 335 (387)
T ss_dssp CBCHHHHHHHHHHHH-------HHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHHHHHHTTCCCCCHHHH
T ss_pred CcCHHHHHHHHHHHh-------hchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcCCCCCCHHHH
Confidence 24556666655432 22355567888888877666555222121 222 2223333333222
Q ss_pred hhhHHHHhhcccceee
Q 003802 269 DIGIRELLDKSLITIV 284 (794)
Q Consensus 269 ~~~l~~L~~~~ll~~~ 284 (794)
...++.|...++++..
T Consensus 336 ~~~l~~L~~~gli~~~ 351 (387)
T 2v1u_A 336 SGIISELDMLGIVKSR 351 (387)
T ss_dssp HHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHhCCCeEEE
Confidence 2457788888888774
No 150
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.16 E-value=8.8e-11 Score=109.18 Aligned_cols=100 Identities=20% Similarity=0.132 Sum_probs=46.4
Q ss_pred eEEEcCCCCcccccccccccccCceeccCCCcCccCCCC-CCCCCCCCEEecccccccccccccccCccccccccccccc
Q 003802 403 FKLNLCNSRIKYLWKGIKPLKELKFMNLSHSCNLIRTPD-FTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCR 481 (794)
Q Consensus 403 ~~L~L~~n~i~~l~~~~~~l~~L~~L~L~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~ 481 (794)
+.+++++|.++.+|..+. ++|++|+|++|.+....+. |.++++|++|+|++|.+.+..+..|..+++|++|+|++|.
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 456666666666665443 5555555555555444443 4555555555555554433222233444444444444443
Q ss_pred cccccccccCCCCCccEEEecCC
Q 003802 482 NLVSFPKNVCLMKSLKILCLCGC 504 (794)
Q Consensus 482 ~~~~~~~~~~~l~~L~~L~L~~~ 504 (794)
+.+..+..+..+++|++|+|++|
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N 115 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNN 115 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSS
T ss_pred cceeCHHHhccccCCCEEEeCCC
Confidence 33222222333444444444443
No 151
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.16 E-value=6.1e-10 Score=118.27 Aligned_cols=206 Identities=11% Similarity=0.062 Sum_probs=141.9
Q ss_pred EEEEecCCcccccchhhhccCCCCcEEEEcCcccCCCcccccc--CcceeeeecCCCCCCCCC-C-CCCCceEEEcCCCC
Q 003802 336 EAIIVDVPEMTELEAKSFSTMSNLRLLEINNLYSSGNLEYLSN--NLRYLKWHEYPFNSLPVS-F-RPEKLFKLNLCNSR 411 (794)
Q Consensus 336 ~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~--~l~~L~~~~~~~~~l~~~-~-~~~~L~~L~L~~n~ 411 (794)
..+.+.. .+..+...+|.++ +|+.+.+..+ +.......|. +|+.+.+.+ .+..++.. | .+.+|+.+++++|.
T Consensus 116 ~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~ 191 (401)
T 4fdw_A 116 NEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNSTVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTK 191 (401)
T ss_dssp SEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTCCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSC
T ss_pred cEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCCCceEEEeCC-CccEehHHHhhCcccCCeeecCCCc
Confidence 3444432 4677888888886 7999998765 4433333332 566666654 55555543 3 67899999999999
Q ss_pred cccccccccccccCceeccCCCcCccCCCC-CCCCCCCCEEecccccccccccccccCcccccccccccccccccccccc
Q 003802 412 IKYLWKGIKPLKELKFMNLSHSCNLIRTPD-FTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNV 490 (794)
Q Consensus 412 i~~l~~~~~~l~~L~~L~L~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~ 490 (794)
++.++...-.+.+|+.+.+..+ +...... |.++++|+.+++..+ +...-..+|.+ .+|+.+.+.+ .+...-+..|
T Consensus 192 l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~-~i~~I~~~aF 267 (401)
T 4fdw_A 192 ITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPN-GVTNIASRAF 267 (401)
T ss_dssp CSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEET-TCCEECTTTT
T ss_pred ceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCC-CccEEChhHh
Confidence 9999877334699999999866 4444444 999999999999874 33333456666 7899999954 4555556788
Q ss_pred CCCCCccEEEecCCCCC-----CCCCccccCCCCCcEEEccCccCcccCc-ccccCCCCCEEEcCC
Q 003802 491 CLMKSLKILCLCGCLKL-----EKLPQDLGEVECLEELDVGGTAIRQIPP-SIVQLVNLKIFSLHG 550 (794)
Q Consensus 491 ~~l~~L~~L~L~~~~~~-----~~~~~~~~~l~~L~~L~l~~~~l~~l~~-~l~~l~~L~~L~l~~ 550 (794)
.++++|+.+.+.++... ..-+..|.++++|+.+++.+ .++.++. .+.+|++|+.+.+..
T Consensus 268 ~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~ 332 (401)
T 4fdw_A 268 YYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPA 332 (401)
T ss_dssp TTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECT
T ss_pred hCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECc
Confidence 99999999999886654 23345677888888888773 4555543 344455555555533
No 152
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.14 E-value=1.4e-10 Score=107.85 Aligned_cols=107 Identities=10% Similarity=-0.064 Sum_probs=66.4
Q ss_pred ceeccCCCcCccCCCCCCCCCCCCEEecccccccccccccccCccccccccccccccccccccccCCCCCccEEEecCCC
Q 003802 426 KFMNLSHSCNLIRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCL 505 (794)
Q Consensus 426 ~~L~L~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~~~ 505 (794)
+.+++++|.+...+..+. ++|++|++++|.+.+..|..|.++++|++|+|++|.+.+..+..+..+++|++|+|++|.
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 567777776654444443 667777777776666656666667777777777666554433445666666666666666
Q ss_pred CCCCCCccccCCCCCcEEEccCccCcccC
Q 003802 506 KLEKLPQDLGEVECLEELDVGGTAIRQIP 534 (794)
Q Consensus 506 ~~~~~~~~~~~l~~L~~L~l~~~~l~~l~ 534 (794)
+.+..+..|..+++|+.|++++|.+...+
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N~~~c~~ 121 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNNPWDCEC 121 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred cceeCHHHhccccCCCEEEeCCCCccccc
Confidence 65544444666666666666666665443
No 153
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.14 E-value=1.4e-10 Score=107.42 Aligned_cols=106 Identities=11% Similarity=-0.052 Sum_probs=70.9
Q ss_pred cCceeccCCCcCccCCCCCCCCCCCCEEecccccccccccccccCccccccccccccccccccccccCCCCCccEEEecC
Q 003802 424 ELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCG 503 (794)
Q Consensus 424 ~L~~L~L~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~ 503 (794)
..+.+++++|.+...+..+ .++|++|++++|.+.+..|..|..+++|++|++++|.+.+..+..+..+++|++|+|++
T Consensus 10 ~~~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp ETTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 3467777777666554444 26677777777776666666677777777777777766554445556677777777777
Q ss_pred CCCCCCCCccccCCCCCcEEEccCccCc
Q 003802 504 CLKLEKLPQDLGEVECLEELDVGGTAIR 531 (794)
Q Consensus 504 ~~~~~~~~~~~~~l~~L~~L~l~~~~l~ 531 (794)
|.+.+..+..|..+++|+.|++++|.+.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 7666655555667777777777777665
No 154
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.13 E-value=2e-09 Score=114.99 Aligned_cols=271 Identities=13% Similarity=0.112 Sum_probs=154.1
Q ss_pred hhhHhHhc----CCCCeEEEEEEccCCCcHHHHHHHHHHHhhccc-cceEEEEechhhhcccChHHHHHHHHHHHhcccc
Q 003802 3 KMNGYLEA----GLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQF-EASSFLANVREVSVTRGLVPLQEQLLSEVLMERD 77 (794)
Q Consensus 3 ~l~~~l~~----~~~~~~vi~i~G~~GvGKTtLa~~v~~~~~~~f-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 77 (794)
++.+++.. ..+..+.+.|+|++|+||||+|+.+++...... ..++++. +............+...+.....
T Consensus 28 ~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~----~~~~~~~~~~~~~l~~~l~~~~~ 103 (389)
T 1fnn_A 28 QLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYIN----GFIYRNFTAIIGEIARSLNIPFP 103 (389)
T ss_dssp HHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEE----TTTCCSHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEe----CccCCCHHHHHHHHHHHhCccCC
Confidence 44455543 223345899999999999999999999776542 3345665 33344555667777766543221
Q ss_pred ccccchhhhHHHHHHHhc--CCeEEEEEcCCCCh--HHHHHHhcCCCCC-C---CCCEEEEEeCChhhhhhcC-------
Q 003802 78 LIIWDVHKGINLIRWRLC--RKRVLVILDDVDQL--EQLQALVGNHDWF-G---FGSRIIITSRDEHVLKSHG------- 142 (794)
Q Consensus 78 ~~~~~~~~~~~~l~~~l~--~~r~LlVlDd~~~~--~~~~~l~~~~~~~-~---~gs~IlvTtR~~~v~~~~~------- 142 (794)
....+.....+.+.+.+. +++.+||+|+++.. .....+....... . .+..||++|+.........
T Consensus 104 ~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~r~ 183 (389)
T 1fnn_A 104 RRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRGIM 183 (389)
T ss_dssp SSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSCHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhCHHhhhcC
Confidence 112233444455555543 56899999999765 3355554443211 1 3667888887654332221
Q ss_pred cCcEEEcCCCChHhHHHHHHhhccCCCCCChhHHHHHHHHHHHh---------CCCchHHHHHhhhhc------C---CC
Q 003802 143 VTNTYKVRGLDYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYA---------GGLPLAIEVLGSFLC------G---RS 204 (794)
Q Consensus 143 ~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~i~~~~---------~g~Plai~~~a~~L~------~---~~ 204 (794)
....+.+.+++.++..+++...+...........+..+.+++.+ +|.|..+..+..... + -+
T Consensus 184 ~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~ 263 (389)
T 1fnn_A 184 GKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIA 263 (389)
T ss_dssp TTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCC
T ss_pred CCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHHhCCCCcC
Confidence 12369999999999999998876321001122346678888898 788865554433211 1 12
Q ss_pred hHHHHHHHHHHHcCCChhHHHHHHhhccCCChhhHhhhhhhcccc---c--CCCHHHHHHh----hhhcCCCc------h
Q 003802 205 VEEWKSALNRLQEAPNEKVLKVLRISYDGLDRRDKEIFLDIACFF---K--GKDEDRVRKK----LDSCGFNS------D 269 (794)
Q Consensus 205 ~~~w~~~l~~l~~~~~~~~~~~l~~sy~~L~~~~~~~~~~~s~fp---~--~~~~~~l~~~----~~~~g~~~------~ 269 (794)
.+....+....... .+.-.+..|+.+.+.++..++.+. . ......+... ....|..+ .
T Consensus 264 ~~~v~~~~~~~~~~-------~~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 336 (389)
T 1fnn_A 264 PEDVRKSSKEVLFG-------ISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIVCEEYGERPRVHSQLW 336 (389)
T ss_dssp HHHHHHHHHHHSCC-------CCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHHHHTTCCCCCHHHHH
T ss_pred HHHHHHHHHHHhhh-------hHHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHHHcCCCCCCHHHHH
Confidence 33333333332211 122234567777777776666543 2 2233333222 22233222 2
Q ss_pred hhHHHHhhcccceee
Q 003802 270 IGIRELLDKSLITIV 284 (794)
Q Consensus 270 ~~l~~L~~~~ll~~~ 284 (794)
.++++|...+++...
T Consensus 337 ~~l~~L~~~gli~~~ 351 (389)
T 1fnn_A 337 SYLNDLREKGIVETR 351 (389)
T ss_dssp HHHHHHHHTTSSEEE
T ss_pred HHHHHHHhCCCeEEe
Confidence 458889999999875
No 155
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.10 E-value=5.3e-10 Score=119.44 Aligned_cols=294 Identities=14% Similarity=0.075 Sum_probs=158.6
Q ss_pred cccccchhhhccCCCCcEEEEcCcccCCCccccccCcceeeeecCCCCCCCCCCCCCCceEEEcCCCCccccccc-cccc
Q 003802 344 EMTELEAKSFSTMSNLRLLEINNLYSSGNLEYLSNNLRYLKWHEYPFNSLPVSFRPEKLFKLNLCNSRIKYLWKG-IKPL 422 (794)
Q Consensus 344 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~~~~~~~~l~~~~~~~~L~~L~L~~n~i~~l~~~-~~~l 422 (794)
.+..+...+|.+|++|+.+.+..+ +.......|.++. +|+.+++..+ ++.++.. |.++
T Consensus 58 ~VtsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~-------------------~L~~i~lp~~-l~~I~~~aF~~c 116 (394)
T 4fs7_A 58 DVVSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCS-------------------KLEIINIPDS-VKMIGRCTFSGC 116 (394)
T ss_dssp EEEEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCT-------------------TCCEECCCTT-CCEECTTTTTTC
T ss_pred eEeEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCC-------------------CCcEEEeCCC-ceEccchhhccc
Confidence 456677888888888888888643 3333333443332 3333333322 3333222 4444
Q ss_pred ccCceeccCCCcC---------------------ccCC-CCCCCCCCCCEEecccccccccccccccCcccccccccccc
Q 003802 423 KELKFMNLSHSCN---------------------LIRT-PDFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDC 480 (794)
Q Consensus 423 ~~L~~L~L~~n~~---------------------~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n 480 (794)
.+|+.+.+..+-. .... ..|.++++|+.+.+.++ ........|.++.+|+.+.+..+
T Consensus 117 ~~L~~i~~p~~l~~i~~~aF~~~~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~ 195 (394)
T 4fs7_A 117 YALKSILLPLMLKSIGVEAFKGCDFKEITIPEGVTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN 195 (394)
T ss_dssp TTCCCCCCCTTCCEECTTTTTTCCCSEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT
T ss_pred ccchhhcccCceeeecceeeecccccccccCccccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC
Confidence 4444444332211 1111 12555556666655442 12222234555556666655543
Q ss_pred ccccccccccCCCCCccEEEecCCCCCCCCCccccCCCCCcEEEccCccCcccC-cccccCCCCCEEEcCCCCCCCCccc
Q 003802 481 RNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIP-PSIVQLVNLKIFSLHGCKGQPPKIL 559 (794)
Q Consensus 481 ~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~-~~l~~l~~L~~L~l~~~~~~~~~~~ 559 (794)
....-...+.++..|+.+.+..+.. .+........+|+.+.+..+ ++.+. ..+..+..|+.+.+..+..
T Consensus 196 -~~~I~~~~F~~~~~L~~i~~~~~~~--~i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~------ 265 (394)
T 4fs7_A 196 -LKIIRDYCFAECILLENMEFPNSLY--YLGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKL------ 265 (394)
T ss_dssp -CCEECTTTTTTCTTCCBCCCCTTCC--EECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTC------
T ss_pred -ceEeCchhhccccccceeecCCCce--EeehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcc------
Confidence 2222233445555555554443211 11222233345555555432 22221 2334555666666544321
Q ss_pred cccchhccccCCCCCCCccccCCCCCCCCCCCEEecCCCCCccCCCCccccCCCCCCeEeCCCCCCccCch-hhhccCCC
Q 003802 560 SSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLPS-SINQLLKL 638 (794)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L 638 (794)
......+..+..++.+......+ ....+..+.+|+.+.+..+ ++.++. .|.++++|
T Consensus 266 ------------------~i~~~~F~~~~~l~~~~~~~~~i----~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L 322 (394)
T 4fs7_A 266 ------------------RIGGSLFYNCSGLKKVIYGSVIV----PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSL 322 (394)
T ss_dssp ------------------EECSCTTTTCTTCCEEEECSSEE----CTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTC
T ss_pred ------------------eeeccccccccccceeccCceee----ccccccccccccccccccc-cceechhhhcCCCCC
Confidence 11223477788888888766542 2345778899999999754 666643 57889999
Q ss_pred CEEecCCCcCCCCCCCCCccccccccccccccccccccccccCCCCceEEEeCCCCchhhhhhhh
Q 003802 639 KILCLEKCRNLKSLPELPPEIVFVGAEDCTSLETISAFAKLSRSPNIALNFLNCFKLVEDQVSKD 703 (794)
Q Consensus 639 ~~L~L~~n~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~n~~~~~~~~~~~~~~~~L~~L~l~~N 703 (794)
+.++|..+ ++.++ .-.+.+|.+|+.+.+..+ ........|.+|++|+.+++..+
T Consensus 323 ~~i~lp~~--v~~I~-------~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 323 VSIDLPYL--VEEIG-------KRSFRGCTSLSNINFPLS--LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp CEECCCTT--CCEEC-------TTTTTTCTTCCEECCCTT--CCEECTTTBTTCTTCCEEEEEGG
T ss_pred CEEEeCCc--ccEEh-------HHhccCCCCCCEEEECcc--ccEehHHHhhCCCCCCEEEECCC
Confidence 99998643 33332 224688999999988654 22333457899999999998654
No 156
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.04 E-value=2.4e-09 Score=106.32 Aligned_cols=186 Identities=12% Similarity=0.065 Sum_probs=104.4
Q ss_pred hhhhHhHhcCCCCeEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEEechhhhcccChHHHHHHHHHHHhcc---ccc
Q 003802 2 EKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLME---RDL 78 (794)
Q Consensus 2 ~~l~~~l~~~~~~~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~ 78 (794)
+++.+++..+. ..+++.|+|++|+|||++|+.+++.....+....+ . ...... ...+....... ...
T Consensus 33 ~~l~~~l~~~~-~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~-~-------~~~~~~-~~~~~~~~~~~~~~~~~ 102 (250)
T 1njg_A 33 TALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITAT-P-------CGVCDN-CREIEQGRFVDLIEIDA 102 (250)
T ss_dssp HHHHHHHHHTC-CCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSS-C-------CSCSHH-HHHHHTTCCSSEEEEET
T ss_pred HHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCC-C-------CcccHH-HHHHhccCCcceEEecC
Confidence 34555555432 23588999999999999999999876543321100 0 000000 00111000000 000
Q ss_pred cccchhhhHHHHHHHh-----cCCeEEEEEcCCCCh--HHHHHHhcCCCCCCCCCEEEEEeCChhh-hh-hcCcCcEEEc
Q 003802 79 IIWDVHKGINLIRWRL-----CRKRVLVILDDVDQL--EQLQALVGNHDWFGFGSRIIITSRDEHV-LK-SHGVTNTYKV 149 (794)
Q Consensus 79 ~~~~~~~~~~~l~~~l-----~~~r~LlVlDd~~~~--~~~~~l~~~~~~~~~gs~IlvTtR~~~v-~~-~~~~~~~~~l 149 (794)
...........+.+.+ .+++.+||+||++.. ..++.+...+.....+..+|+||+.... .. .......+++
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~l~~r~~~i~l 182 (250)
T 1njg_A 103 ASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHL 182 (250)
T ss_dssp TCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHHHTTSEEEEC
T ss_pred cccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHHHHHHhhhccC
Confidence 0000011112222221 346799999999653 4455555444333457788888876432 11 1223458999
Q ss_pred CCCChHhHHHHHHhhccCCCCCChhHHHHHHHHHHHhCCCchHHHHHhhh
Q 003802 150 RGLDYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIEVLGSF 199 (794)
Q Consensus 150 ~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~a~~ 199 (794)
.+++.++..+++...+..... ....+..+.|++.++|.|..+..++..
T Consensus 183 ~~l~~~e~~~~l~~~~~~~~~--~~~~~~~~~l~~~~~G~~~~~~~~~~~ 230 (250)
T 1njg_A 183 KALDVEQIRHQLEHILNEEHI--AHEPRALQLLARAAEGSLRDALSLTDQ 230 (250)
T ss_dssp CCCCHHHHHHHHHHHHHHTTC--CBCHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 999999999999887633221 122356788999999999988876553
No 157
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.96 E-value=7.3e-11 Score=124.13 Aligned_cols=61 Identities=16% Similarity=0.152 Sum_probs=32.8
Q ss_pred CCCCCEEecCCCCCccC---CCCccccCCCCCCeEeCCCCCCcc-----CchhhhccCCCCEEecCCCc
Q 003802 587 LSSLQTLDLSDCNLLEG---AIPSDIGSLFSLEAIDLSGNNFFS-----LPSSINQLLKLKILCLEKCR 647 (794)
Q Consensus 587 ~~~L~~L~l~~n~~~~~---~~~~~~~~l~~L~~L~L~~n~l~~-----lp~~l~~l~~L~~L~L~~n~ 647 (794)
+++|++|+|++|.+... .++..+..+++|++|+|++|.++. ++..+..+++|++|+|++|+
T Consensus 182 ~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 182 NTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp CSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred CCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence 44555566665552110 123344555666666666666652 33344555667777777665
No 158
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.95 E-value=3.1e-11 Score=126.97 Aligned_cols=152 Identities=16% Similarity=0.067 Sum_probs=96.8
Q ss_pred CceEEEcCCCCccccc-----cccc-ccccCceeccCCCcCccCCCC--CCCCCCCCEEecccccccccccccc-----c
Q 003802 401 KLFKLNLCNSRIKYLW-----KGIK-PLKELKFMNLSHSCNLIRTPD--FTGVPNLERLNLEGCTRLLEVHQSV-----G 467 (794)
Q Consensus 401 ~L~~L~L~~n~i~~l~-----~~~~-~l~~L~~L~L~~n~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~~~~-----~ 467 (794)
+|++|++++|.++... ..+. ..++|++|+|++|.+...... ...+++|++|+|++|.+.......+ .
T Consensus 73 ~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~ 152 (372)
T 3un9_A 73 SLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLH 152 (372)
T ss_dssp TCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHS
T ss_pred hCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHh
Confidence 5666777777665322 1222 225777777777765432211 2234567777777776654333333 2
Q ss_pred Ccccccccccccccccc----ccccccCCCCCccEEEecCCCCCCC----CCccccCCCCCcEEEccCccCcc-----cC
Q 003802 468 TLKRLILLNLKDCRNLV----SFPKNVCLMKSLKILCLCGCLKLEK----LPQDLGEVECLEELDVGGTAIRQ-----IP 534 (794)
Q Consensus 468 ~l~~L~~L~l~~n~~~~----~~~~~~~~l~~L~~L~L~~~~~~~~----~~~~~~~l~~L~~L~l~~~~l~~-----l~ 534 (794)
..++|++|+|++|.+.. .++..+..+++|++|+|++|.+... ++..+...++|++|++++|.++. ++
T Consensus 153 ~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~ 232 (372)
T 3un9_A 153 DQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALA 232 (372)
T ss_dssp TTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHH
T ss_pred cCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHH
Confidence 35678888888877543 2445556778888888888876542 24456677788888888888873 44
Q ss_pred cccccCCCCCEEEcCCCC
Q 003802 535 PSIVQLVNLKIFSLHGCK 552 (794)
Q Consensus 535 ~~l~~l~~L~~L~l~~~~ 552 (794)
..+..+++|++|++++|.
T Consensus 233 ~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 233 RAAREHPSLELLHLYFNE 250 (372)
T ss_dssp HHHHHCSSCCEEECTTSS
T ss_pred HHHHhCCCCCEEeccCCC
Confidence 456667889999998886
No 159
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.92 E-value=6.5e-09 Score=101.44 Aligned_cols=173 Identities=15% Similarity=0.134 Sum_probs=98.8
Q ss_pred hhhhHhHhcCCCCeEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEEechhhhcccChHHHHHHHHHHHhcccccccc
Q 003802 2 EKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIW 81 (794)
Q Consensus 2 ~~l~~~l~~~~~~~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 81 (794)
+++.+++.... .+.+.|+|++|+|||++|+.+++.+........++... ......... ..+.........
T Consensus 27 ~~l~~~l~~~~--~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~----- 96 (226)
T 2chg_A 27 QRLKGYVERKN--IPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMN--ASDERGIDV-VRHKIKEFARTA----- 96 (226)
T ss_dssp HHHHHHHHTTC--CCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEE--TTCTTCHHH-HHHHHHHHHTSC-----
T ss_pred HHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEec--cccccChHH-HHHHHHHHhccc-----
Confidence 34555565542 23489999999999999999998764332222222211 111112111 111111111000
Q ss_pred chhhhHHHHHHHhcCCeEEEEEcCCCCh--HHHHHHhcCCCCCCCCCEEEEEeCChhh-hh-hcCcCcEEEcCCCChHhH
Q 003802 82 DVHKGINLIRWRLCRKRVLVILDDVDQL--EQLQALVGNHDWFGFGSRIIITSRDEHV-LK-SHGVTNTYKVRGLDYVEA 157 (794)
Q Consensus 82 ~~~~~~~~l~~~l~~~r~LlVlDd~~~~--~~~~~l~~~~~~~~~gs~IlvTtR~~~v-~~-~~~~~~~~~l~~L~~~ea 157 (794)
....+++.+||+||++.. ...+.+...+.....+.++|+||+.... .. .......+++.+++.++.
T Consensus 97 ----------~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~~~~~~~~~~ 166 (226)
T 2chg_A 97 ----------PIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAM 166 (226)
T ss_dssp ----------CSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHH
T ss_pred ----------CCCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCceeecCCCCHHHH
Confidence 011257899999999765 2344444333222456788888876532 11 122234889999999999
Q ss_pred HHHHHhhccCCCCCChhHHHHHHHHHHHhCCCchHHHHH
Q 003802 158 LQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIEVL 196 (794)
Q Consensus 158 ~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 196 (794)
.+++.+.+...... ...+..+.+++.++|.|..+..+
T Consensus 167 ~~~l~~~~~~~~~~--~~~~~~~~l~~~~~g~~r~l~~~ 203 (226)
T 2chg_A 167 KKRLLEICEKEGVK--ITEDGLEALIYISGGDFRKAINA 203 (226)
T ss_dssp HHHHHHHHHHHTCC--BCHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHH
Confidence 99998876321111 22356778889999999865544
No 160
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.90 E-value=4.5e-08 Score=104.39 Aligned_cols=297 Identities=12% Similarity=0.110 Sum_probs=135.6
Q ss_pred ccccchhhhccCC-CCcEEEEcCcccCCCccccccCcceeeeecCCCCCCCCCCCCCCceEEEcCCC---Ccccccc-cc
Q 003802 345 MTELEAKSFSTMS-NLRLLEINNLYSSGNLEYLSNNLRYLKWHEYPFNSLPVSFRPEKLFKLNLCNS---RIKYLWK-GI 419 (794)
Q Consensus 345 ~~~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~l~~L~~~~~~~~~l~~~~~~~~L~~L~L~~n---~i~~l~~-~~ 419 (794)
+..+...+|.+++ .|+.+.+..+ ++..-...|. .+.+|+.+.+..+ .++.+.. +|
T Consensus 51 Vt~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~-------------------~C~~L~~i~~~~n~p~~l~~Ig~~aF 110 (394)
T 4gt6_A 51 VSKIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFY-------------------NCTSLKRVTIQDNKPSCVKKIGRQAF 110 (394)
T ss_dssp EEEECTTTTTTCCSCCCEEEECTT-CCEECTTTTT-------------------TCTTCCEEEEGGGCCCCCCEECTTTT
T ss_pred eeEcCHhhccCCCCcCEEEEECCC-eeEEhHHHhh-------------------CCccCceEeecCCCCCeeeEechhhc
Confidence 4456667777764 4777776542 2222222222 2234555555443 2444432 36
Q ss_pred cccccCceeccCCCcCccCCCC-CCCCCCCCEEecccccccccccccccCccccccccccccccccccccccCCCCCccE
Q 003802 420 KPLKELKFMNLSHSCNLIRTPD-FTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKI 498 (794)
Q Consensus 420 ~~l~~L~~L~L~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 498 (794)
..+.+|+.+.+..+ ....... |..+.+|+.+.+..+ ........+..+.+|+.+.+..+ ...+........+|+.
T Consensus 111 ~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~--~~~I~~~aF~~~~l~~ 186 (394)
T 4gt6_A 111 MFCSELTDIPILDS-VTEIDSEAFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS--VTAIEERAFTGTALTQ 186 (394)
T ss_dssp TTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCCCSE
T ss_pred hhcccceeeccCCc-cceehhhhhhhhcccccccccce-eeeecccceecccccccccccce--eeEeccccccccceeE
Confidence 66666666666554 2222222 666666666666542 22222345556666666666542 1222222222345666
Q ss_pred EEecCCCCCCCCCccccCCCCCcEEEccCccCcccCcccccC--------------CCCCEEEcCCCCCCCCccccccch
Q 003802 499 LCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIPPSIVQL--------------VNLKIFSLHGCKGQPPKILSSNFF 564 (794)
Q Consensus 499 L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~l~~l--------------~~L~~L~l~~~~~~~~~~~~~~~~ 564 (794)
+.+..+ ....-...|..+.++.......+....+...+... ..+..+.+...
T Consensus 187 i~ip~~-~~~i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~------------- 252 (394)
T 4gt6_A 187 IHIPAK-VTRIGTNAFSECFALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNG------------- 252 (394)
T ss_dssp EEECTT-CCEECTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTT-------------
T ss_pred EEECCc-ccccccchhhhccccceecccccccccccceeecccccccccccccccccccceEEcCCc-------------
Confidence 665442 22222334555556665555443332222111110 01111111000
Q ss_pred hccccCCCCCCCccccCCCCCCCCCCCEEecCCCCCccCCCCccccCCCCCCeEeCCCCCCccCch-hhhccCCCCEEec
Q 003802 565 LSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLPS-SINQLLKLKILCL 643 (794)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~L 643 (794)
........|.++.+|+.+.+..+.. ......|.++++|+.+.+. +.++.++. .|.+|.+|+.++|
T Consensus 253 -----------v~~i~~~aF~~c~~L~~i~lp~~~~--~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~l 318 (394)
T 4gt6_A 253 -----------VARIETHAFDSCAYLASVKMPDSVV--SIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDI 318 (394)
T ss_dssp -----------EEEECTTTTTTCSSCCEEECCTTCC--EECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEEC
T ss_pred -----------ceEcccceeeecccccEEecccccc--eecCcccccccccccccCC-CcccccCceeecCCCCcCEEEe
Confidence 0011123355666666666654431 2233445566666666664 33444433 3556666666666
Q ss_pred CCCcCCCCCCCCCccccccccccccccccccccccccCCCCceEEEeCCCCchhhhhhhhh
Q 003802 644 EKCRNLKSLPELPPEIVFVGAEDCTSLETISAFAKLSRSPNIALNFLNCFKLVEDQVSKDN 704 (794)
Q Consensus 644 ~~n~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~n~~~~~~~~~~~~~~~~L~~L~l~~N~ 704 (794)
..+ ++.+. .-.+.+|.+|+.+.+..+ ........|.+|++|+.+++.+|.
T Consensus 319 p~~--v~~I~-------~~aF~~C~~L~~i~ip~s--v~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 319 PEG--ITQIL-------DDAFAGCEQLERIAIPSS--VTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp CTT--CCEEC-------TTTTTTCTTCCEEEECTT--CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred CCc--ccEeh-------HhHhhCCCCCCEEEECcc--cCEEhHhHhhCCCCCCEEEECCce
Confidence 432 22221 113455666666655432 222223355666666666666554
No 161
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.86 E-value=3.5e-09 Score=111.07 Aligned_cols=102 Identities=17% Similarity=0.053 Sum_probs=62.2
Q ss_pred EEEcCCC-CcccccccccccccCceeccCC-CcCccCCCC-CCCCCCCCEEecccccccccccccccCcccccccccccc
Q 003802 404 KLNLCNS-RIKYLWKGIKPLKELKFMNLSH-SCNLIRTPD-FTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDC 480 (794)
Q Consensus 404 ~L~L~~n-~i~~l~~~~~~l~~L~~L~L~~-n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n 480 (794)
.++++++ .++.+|. +..+++|++|+|++ |.+...++. |.++++|+.|+|++|.+.+..|..|.++++|++|+|++|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 3566666 6777776 77777777777774 665555544 666666666666666666655566666666666666666
Q ss_pred ccccccccccCCCCCccEEEecCCCCC
Q 003802 481 RNLVSFPKNVCLMKSLKILCLCGCLKL 507 (794)
Q Consensus 481 ~~~~~~~~~~~~l~~L~~L~L~~~~~~ 507 (794)
.+.+..+..+..++ |++|+|.+|.+.
T Consensus 91 ~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 91 ALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred ccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 65433333333333 666666665544
No 162
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.84 E-value=7.1e-08 Score=102.86 Aligned_cols=307 Identities=11% Similarity=0.059 Sum_probs=147.4
Q ss_pred eEEEEEecCCcccccchhhhccCCCCcEEEEcCcc---cCCCccccccCcceeeeecCCCCCCCCCCCCCCceEEEcCCC
Q 003802 334 AVEAIIVDVPEMTELEAKSFSTMSNLRLLEINNLY---SSGNLEYLSNNLRYLKWHEYPFNSLPVSFRPEKLFKLNLCNS 410 (794)
Q Consensus 334 ~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~---~~~~~~~~~~~l~~L~~~~~~~~~l~~~~~~~~L~~L~L~~n 410 (794)
.++.+.+.. .+..+...+|.+|++|+.+.+..+. +.......|..+. +|+.+.+..
T Consensus 65 ~L~sI~iP~-svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~-------------------~L~~i~~~~- 123 (394)
T 4gt6_A 65 VLTSVQIPD-TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCS-------------------ELTDIPILD- 123 (394)
T ss_dssp CCCEEEECT-TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCT-------------------TCCBCGGGT-
T ss_pred cCEEEEECC-CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcc-------------------cceeeccCC-
Confidence 467777764 4788899999999999999998763 2222233333332 222222221
Q ss_pred Ccccccc-cccccccCceeccCCCcCccCCC-CCCCCCCCCEEecccccccccccccccCcccccccccccccccccccc
Q 003802 411 RIKYLWK-GIKPLKELKFMNLSHSCNLIRTP-DFTGVPNLERLNLEGCTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPK 488 (794)
Q Consensus 411 ~i~~l~~-~~~~l~~L~~L~L~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 488 (794)
.++.++. .|..+.+|+.+.+..+. ..... .|..+.+|+.+.+..+ ....-...|. ..+|+.+.+..+ .......
T Consensus 124 ~~~~I~~~aF~~c~~L~~i~lp~~~-~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~-~~~l~~i~ip~~-~~~i~~~ 199 (394)
T 4gt6_A 124 SVTEIDSEAFHHCEELDTVTIPEGV-TSVADGMFSYCYSLHTVTLPDS-VTAIEERAFT-GTALTQIHIPAK-VTRIGTN 199 (394)
T ss_dssp TCSEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCEEECCTT-CCEECTTTTT-TCCCSEEEECTT-CCEECTT
T ss_pred ccceehhhhhhhhccccccccccee-eeecccceecccccccccccce-eeEecccccc-ccceeEEEECCc-ccccccc
Confidence 1333322 25555666666665432 22222 2555666666666542 1111112232 234555555432 2222333
Q ss_pred ccCCCCCccEEEecCCCCCCCCCcc-------------ccCCCCCcEEEccCccCccc-CcccccCCCCCEEEcCCCCCC
Q 003802 489 NVCLMKSLKILCLCGCLKLEKLPQD-------------LGEVECLEELDVGGTAIRQI-PPSIVQLVNLKIFSLHGCKGQ 554 (794)
Q Consensus 489 ~~~~l~~L~~L~L~~~~~~~~~~~~-------------~~~l~~L~~L~l~~~~l~~l-~~~l~~l~~L~~L~l~~~~~~ 554 (794)
.+..+.++................. +.....+..+.+.. .++.+ ...+..+.+|+.+.+..+...
T Consensus 200 af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~~~~ 278 (394)
T 4gt6_A 200 AFSECFALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPN-GVARIETHAFDSCAYLASVKMPDSVVS 278 (394)
T ss_dssp TTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCT-TEEEECTTTTTTCSSCCEEECCTTCCE
T ss_pred hhhhccccceecccccccccccceeecccccccccccccccccccceEEcCC-cceEcccceeeecccccEEecccccce
Confidence 4455555555544432221110000 11112233333322 12222 224556677777776543211
Q ss_pred CCccccccchhccccCCCCCCCccccCCCCCCCCCCCEEecCCCCCccCCCCccccCCCCCCeEeCCCCCCccCc-hhhh
Q 003802 555 PPKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLP-SSIN 633 (794)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp-~~l~ 633 (794)
..-..|.++++|+.+.+... ++......|.+|.+|+.++|..+ ++.+. ..|.
T Consensus 279 ------------------------I~~~aF~~c~~L~~i~l~~~--i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~ 331 (394)
T 4gt6_A 279 ------------------------IGTGAFMNCPALQDIEFSSR--ITELPESVFAGCISLKSIDIPEG-ITQILDDAFA 331 (394)
T ss_dssp ------------------------ECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTT
T ss_pred ------------------------ecCcccccccccccccCCCc--ccccCceeecCCCCcCEEEeCCc-ccEehHhHhh
Confidence 11234666777777777543 33334455677777777777643 55553 3567
Q ss_pred ccCCCCEEecCCCcCCCCCCCCCccccccccccccccccccccccccCCCCceEEEeCCCCchhhhhhhhhHH
Q 003802 634 QLLKLKILCLEKCRNLKSLPELPPEIVFVGAEDCTSLETISAFAKLSRSPNIALNFLNCFKLVEDQVSKDNLA 706 (794)
Q Consensus 634 ~l~~L~~L~L~~n~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~n~~~~~~~~~~~~~~~~L~~L~l~~N~l~ 706 (794)
+|.+|+.+.|..+ ++.++ .-.+.+|.+|+.+.+.++... ...+..|.+|+.+.+..|.+.
T Consensus 332 ~C~~L~~i~ip~s--v~~I~-------~~aF~~C~~L~~i~~~~~~~~----~~~~~~~~~L~~i~i~~~~~~ 391 (394)
T 4gt6_A 332 GCEQLERIAIPSS--VTKIP-------ESAFSNCTALNNIEYSGSRSQ----WNAISTDSGLQNLPVAPGSID 391 (394)
T ss_dssp TCTTCCEEEECTT--CCBCC-------GGGGTTCTTCCEEEESSCHHH----HHTCBCCCCC-----------
T ss_pred CCCCCCEEEECcc--cCEEh-------HhHhhCCCCCCEEEECCceee----hhhhhccCCCCEEEeCCCCEE
Confidence 7777777777543 22222 124567777777776654211 124567778888877766543
No 163
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.80 E-value=1.1e-08 Score=107.27 Aligned_cols=102 Identities=16% Similarity=0.079 Sum_probs=50.5
Q ss_pred eccCCC-cCccCCCCCCCCCCCCEEeccc-ccccccccccccCccccccccccccccccccccccCCCCCccEEEecCCC
Q 003802 428 MNLSHS-CNLIRTPDFTGVPNLERLNLEG-CTRLLEVHQSVGTLKRLILLNLKDCRNLVSFPKNVCLMKSLKILCLCGCL 505 (794)
Q Consensus 428 L~L~~n-~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~~~ 505 (794)
++++++ .+...+. +..+++|++|+|++ |.+.+..+..|.++++|++|+|++|.+.+..|..|.++++|++|+|++|.
T Consensus 13 v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 91 (347)
T 2ifg_A 13 LRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA 91 (347)
T ss_dssp EECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred EEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc
Confidence 345554 3433333 55555555555554 44444444455555555555555555544444455555555555555555
Q ss_pred CCCCCCccccCCCCCcEEEccCccCc
Q 003802 506 KLEKLPQDLGEVECLEELDVGGTAIR 531 (794)
Q Consensus 506 ~~~~~~~~~~~l~~L~~L~l~~~~l~ 531 (794)
+.+..+..|..++ |+.|++.+|.+.
T Consensus 92 l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 92 LESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred cceeCHHHcccCC-ceEEEeeCCCcc
Confidence 4443333333333 555555555444
No 164
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.80 E-value=2.4e-08 Score=103.55 Aligned_cols=168 Identities=19% Similarity=0.250 Sum_probs=96.9
Q ss_pred hhhHhHhcCCCCeEEEEEEccCCCcHHHHHHHHHHHhhcc-cc-ceEEEEechhhhcccChHHHHHHHHHHHhccccccc
Q 003802 3 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ-FE-ASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLII 80 (794)
Q Consensus 3 ~l~~~l~~~~~~~~vi~i~G~~GvGKTtLa~~v~~~~~~~-f~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 80 (794)
++.+++..+. .+.+.|+|++|+|||++|+.+++.+... +. ..+++. .+..... +..++++..+....
T Consensus 32 ~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~----~~~~~~~-~~i~~~~~~~~~~~---- 100 (323)
T 1sxj_B 32 RLQQIAKDGN--MPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELN----ASDDRGI-DVVRNQIKHFAQKK---- 100 (323)
T ss_dssp HHHHHHHSCC--CCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEEC----TTSCCSH-HHHHTHHHHHHHBC----
T ss_pred HHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEec----CccccCh-HHHHHHHHHHHhcc----
Confidence 4555555433 2338899999999999999999976332 22 123332 1111111 11222222211000
Q ss_pred cchhhhHHHHHHHh-cCCeEEEEEcCCCCh--HHHHHHhcCCCCCCCCCEEEEEeCChh-hhhh-cCcCcEEEcCCCChH
Q 003802 81 WDVHKGINLIRWRL-CRKRVLVILDDVDQL--EQLQALVGNHDWFGFGSRIIITSRDEH-VLKS-HGVTNTYKVRGLDYV 155 (794)
Q Consensus 81 ~~~~~~~~~l~~~l-~~~r~LlVlDd~~~~--~~~~~l~~~~~~~~~gs~IlvTtR~~~-v~~~-~~~~~~~~l~~L~~~ 155 (794)
..+ .+++.++|+||++.. ..++.+...+.....++++|+||+... +... ......+++.+++.+
T Consensus 101 -----------~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~i~~~~~~~~ 169 (323)
T 1sxj_B 101 -----------LHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILRYSKLSDE 169 (323)
T ss_dssp -----------CCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHH
T ss_pred -----------ccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceEEeecCCCHH
Confidence 011 356899999999764 334444333322245678888887642 2111 233448999999999
Q ss_pred hHHHHHHhhccCCCCCChhHHHHHHHHHHHhCCCchHHH
Q 003802 156 EALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIE 194 (794)
Q Consensus 156 ea~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~ 194 (794)
+..+++...+..... ...++....+++.++|.|..+.
T Consensus 170 ~~~~~l~~~~~~~~~--~~~~~~~~~l~~~~~G~~r~a~ 206 (323)
T 1sxj_B 170 DVLKRLLQIIKLEDV--KYTNDGLEAIIFTAEGDMRQAI 206 (323)
T ss_dssp HHHHHHHHHHHHHTC--CBCHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHH
Confidence 999999887532111 1223567889999999995543
No 165
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.69 E-value=1.4e-08 Score=105.56 Aligned_cols=142 Identities=17% Similarity=0.169 Sum_probs=87.7
Q ss_pred cccccCCCCCccEEEecCCCCCCCCCccccCCCCCcEEEccCccCcc-cCccc--ccCCCCCEEEcCCCC---CCCCccc
Q 003802 486 FPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQ-IPPSI--VQLVNLKIFSLHGCK---GQPPKIL 559 (794)
Q Consensus 486 ~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-l~~~l--~~l~~L~~L~l~~~~---~~~~~~~ 559 (794)
++..+..+++|+.|+|++|... .++. + .+++|++|++..+.+.. ....+ ..+++|+.|+|+.+. +.... +
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~-~ 239 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGD-M 239 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSC-G
T ss_pred HHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchh-H
Confidence 4444566788888888876322 2232 3 37788888888877651 11223 268889988885422 10000 0
Q ss_pred cccchhccccCCCCCCCccccCCCCCCCCCCCEEecCCCCCccCCCCccc---cCCCCCCeEeCCCCCCcc-----Cchh
Q 003802 560 SSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDI---GSLFSLEAIDLSGNNFFS-----LPSS 631 (794)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~---~~l~~L~~L~L~~n~l~~-----lp~~ 631 (794)
.. ....-....+++|+.|++++|.+.. ..+..+ ..+++|++|+|+.|.++. ++..
T Consensus 240 ~~----------------l~~~l~~~~~p~Lr~L~L~~~~i~~-~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~ 302 (362)
T 2ra8_A 240 NV----------------FRPLFSKDRFPNLKWLGIVDAEEQN-VVVEMFLESDILPQLETMDISAGVLTDEGARLLLDH 302 (362)
T ss_dssp GG----------------TGGGSCTTTCTTCCEEEEESCTTHH-HHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTT
T ss_pred HH----------------HHHHHhcCCCCCcCEEeCCCCCCch-HHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhh
Confidence 00 0001112357899999999988432 122222 257899999999998873 4545
Q ss_pred hhccCCCCEEecCCCcC
Q 003802 632 INQLLKLKILCLEKCRN 648 (794)
Q Consensus 632 l~~l~~L~~L~L~~n~~ 648 (794)
+..+++|+.|+|++|.+
T Consensus 303 L~~l~~L~~L~L~~n~i 319 (362)
T 2ra8_A 303 VDKIKHLKFINMKYNYL 319 (362)
T ss_dssp HHHHTTCSEEECCSBBC
T ss_pred cccCCcceEEECCCCcC
Confidence 67789999999998863
No 166
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.68 E-value=1.7e-06 Score=91.70 Aligned_cols=279 Identities=12% Similarity=0.108 Sum_probs=155.3
Q ss_pred CeEEEEEecCCcccccchhhhccCCCCcEEEEcCcccCCCccccccC--cceeeeecCCCCCCCCC-CCCCCceEEEcCC
Q 003802 333 DAVEAIIVDVPEMTELEAKSFSTMSNLRLLEINNLYSSGNLEYLSNN--LRYLKWHEYPFNSLPVS-FRPEKLFKLNLCN 409 (794)
Q Consensus 333 ~~~~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~--l~~L~~~~~~~~~l~~~-~~~~~L~~L~L~~ 409 (794)
+.++.+.+.. .+..+...+|.+|.+|+.+.+..+ +.......|.+ +..+.+.. .+..+... +...+|+.+.+..
T Consensus 46 ~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c~l~~i~~~~-~l~~I~~~aF~~~~L~~i~lp~ 122 (379)
T 4h09_A 46 DRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADTKLQSYTGME-RVKKFGDYVFQGTDLDDFEFPG 122 (379)
T ss_dssp GGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCCCCEEEECT-TCCEECTTTTTTCCCSEEECCT
T ss_pred cCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCCCCceEECCc-eeeEeccceeccCCcccccCCC
Confidence 4566677653 577889999999999999999654 44333444443 33333322 23333322 3344677777765
Q ss_pred CCccccccc-ccccccCceeccCCCcCccCCCCCCCCCCCCEEeccccccccc------------ccccccCcccccccc
Q 003802 410 SRIKYLWKG-IKPLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCTRLLE------------VHQSVGTLKRLILLN 476 (794)
Q Consensus 410 n~i~~l~~~-~~~l~~L~~L~L~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~------------~~~~~~~l~~L~~L~ 476 (794)
+ +..+... |.+. +|+.+.+..+-.......|..+.+++.+.+..+..... ....+.....+..+.
T Consensus 123 ~-~~~i~~~~F~~~-~l~~~~~~~~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (379)
T 4h09_A 123 A-TTEIGNYIFYNS-SVKRIVIPKSVTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEFT 200 (379)
T ss_dssp T-CCEECTTTTTTC-CCCEEEECTTCCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEEE
T ss_pred c-cccccccccccc-eeeeeeccceeeccccchhcccccccccccccccceeecccceecccccceeccccccccccccc
Confidence 4 3334332 4333 45555555442111122366677777776655332111 111222233333333
Q ss_pred ccccccccccccccCCCCCccEEEecCCCCCCCCCccccCCCCCcEEEccCccCcccC-cccccCCCCCEEEcCCCCCCC
Q 003802 477 LKDCRNLVSFPKNVCLMKSLKILCLCGCLKLEKLPQDLGEVECLEELDVGGTAIRQIP-PSIVQLVNLKIFSLHGCKGQP 555 (794)
Q Consensus 477 l~~n~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~-~~l~~l~~L~~L~l~~~~~~~ 555 (794)
+... ........+....+|+.+.+.. .....-...|.++.+|+.+.+..+ ++.+. ..+.++.+|+.+.+..+-.
T Consensus 201 ~~~~-~~~i~~~~f~~~~~l~~i~~~~-~~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~i~-- 275 (379)
T 4h09_A 201 IPST-VKTVTAYGFSYGKNLKKITITS-GVTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAKVK-- 275 (379)
T ss_dssp CCTT-CCEECTTTTTTCSSCSEEECCT-TCCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCCCS--
T ss_pred cccc-eeEEeecccccccccceeeecc-ceeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccccccce--
Confidence 3221 1222233445566677766654 233333345667777777777654 44443 2455677777777654321
Q ss_pred CccccccchhccccCCCCCCCccccCCCCCCCCCCCEEecCCCCCccCCCCccccCCCCCCeEeCCCCCCccCch-hhhc
Q 003802 556 PKILSSNFFLSLLLPNKNSDSMCLSFPRFTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLPS-SINQ 634 (794)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~-~l~~ 634 (794)
......|.++++|+.+.+.++. ++......|.+|.+|+.+.|..+ ++.|.. .|.+
T Consensus 276 ----------------------~i~~~aF~~c~~L~~i~l~~~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~ 331 (379)
T 4h09_A 276 ----------------------TVPYLLCSGCSNLTKVVMDNSA-IETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKN 331 (379)
T ss_dssp ----------------------EECTTTTTTCTTCCEEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT
T ss_pred ----------------------eccccccccccccccccccccc-cceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhC
Confidence 1122447788888888888776 44344567888888988888644 666643 5778
Q ss_pred cCCCCEEecCC
Q 003802 635 LLKLKILCLEK 645 (794)
Q Consensus 635 l~~L~~L~L~~ 645 (794)
|++|+.+.+..
T Consensus 332 C~~L~~i~ip~ 342 (379)
T 4h09_A 332 CKALSTISYPK 342 (379)
T ss_dssp CTTCCCCCCCT
T ss_pred CCCCCEEEECC
Confidence 88888887754
No 167
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.68 E-value=9.8e-09 Score=106.79 Aligned_cols=132 Identities=16% Similarity=0.123 Sum_probs=73.1
Q ss_pred ccccccCceeccCCCcCccCCCCCCCCCCCCEEeccccccccccccccc--Ccccccccccccc--cccc-----ccccc
Q 003802 419 IKPLKELKFMNLSHSCNLIRTPDFTGVPNLERLNLEGCTRLLEVHQSVG--TLKRLILLNLKDC--RNLV-----SFPKN 489 (794)
Q Consensus 419 ~~~l~~L~~L~L~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~--~l~~L~~L~l~~n--~~~~-----~~~~~ 489 (794)
+..+|+|+.|+|++|.... .+.+ .+++|++|++..|.+.......+. .+++|++|+|+.+ ...+ .+...
T Consensus 168 l~~~P~L~~L~L~g~~~l~-l~~~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~ 245 (362)
T 2ra8_A 168 LDAMPLLNNLKIKGTNNLS-IGKK-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPL 245 (362)
T ss_dssp HHTCTTCCEEEEECCBTCB-CCSC-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGG
T ss_pred HhcCCCCcEEEEeCCCCce-eccc-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHH
Confidence 3445566666665552121 1222 256677777766654433222332 5667777766421 1111 11111
Q ss_pred c--CCCCCccEEEecCCCCCCCCCccc---cCCCCCcEEEccCccCcc-----cCcccccCCCCCEEEcCCCC
Q 003802 490 V--CLMKSLKILCLCGCLKLEKLPQDL---GEVECLEELDVGGTAIRQ-----IPPSIVQLVNLKIFSLHGCK 552 (794)
Q Consensus 490 ~--~~l~~L~~L~L~~~~~~~~~~~~~---~~l~~L~~L~l~~~~l~~-----l~~~l~~l~~L~~L~l~~~~ 552 (794)
+ ..+++|++|+|++|.+....+..+ ..+++|++|+|+.|.++. ++..+..+++|+.|++++|.
T Consensus 246 l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 246 FSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp SCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred HhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 2 246788888888777654322222 246788888888887763 44455667888888887775
No 168
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.60 E-value=3.2e-07 Score=95.19 Aligned_cols=172 Identities=17% Similarity=0.146 Sum_probs=98.0
Q ss_pred hhhHhHhcCCCCeEEEEEEccCCCcHHHHHHHHHHHhhccc-c-ceEEEEechhhhcccChHHHHHHHHHHHhccccccc
Q 003802 3 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQF-E-ASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLII 80 (794)
Q Consensus 3 ~l~~~l~~~~~~~~vi~i~G~~GvGKTtLa~~v~~~~~~~f-~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 80 (794)
++.+++..+. .+.+.|+|++|+|||++|+.+++.+.... . ..+.+.... ......+. +.+.......
T Consensus 36 ~l~~~l~~~~--~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~-~~~~~~~~----~~~~~~~~~~---- 104 (327)
T 1iqp_A 36 RLKHYVKTGS--MPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASD-ERGINVIR----EKVKEFARTK---- 104 (327)
T ss_dssp HHHHHHHHTC--CCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTC-HHHHHTTH----HHHHHHHHSC----
T ss_pred HHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccc-cCchHHHH----HHHHHHHhhC----
Confidence 4555555542 23489999999999999999999764322 1 122332110 00000111 1111100000
Q ss_pred cchhhhHHHHHHHhcCCeEEEEEcCCCCh--HHHHHHhcCCCCCCCCCEEEEEeCChhh-hhh-cCcCcEEEcCCCChHh
Q 003802 81 WDVHKGINLIRWRLCRKRVLVILDDVDQL--EQLQALVGNHDWFGFGSRIIITSRDEHV-LKS-HGVTNTYKVRGLDYVE 156 (794)
Q Consensus 81 ~~~~~~~~~l~~~l~~~r~LlVlDd~~~~--~~~~~l~~~~~~~~~gs~IlvTtR~~~v-~~~-~~~~~~~~l~~L~~~e 156 (794)
....+++.++|+|+++.. ...+.+...+.....++++|+||..... ... ......+++.+++.++
T Consensus 105 -----------~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~l~~~~ 173 (327)
T 1iqp_A 105 -----------PIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDED 173 (327)
T ss_dssp -----------CGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEEEECCCCCHHH
T ss_pred -----------CcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCcEEEecCCCHHH
Confidence 011257889999999765 3344454433323456788888876431 111 1122378999999999
Q ss_pred HHHHHHhhccCCCCCChhHHHHHHHHHHHhCCCchHHHHHhh
Q 003802 157 ALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIEVLGS 198 (794)
Q Consensus 157 a~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~a~ 198 (794)
..+++...+.... .....+..+.|++.++|.|..+..+..
T Consensus 174 ~~~~l~~~~~~~~--~~~~~~~~~~l~~~~~g~~r~~~~~l~ 213 (327)
T 1iqp_A 174 IAKRLRYIAENEG--LELTEEGLQAILYIAEGDMRRAINILQ 213 (327)
T ss_dssp HHHHHHHHHHTTT--CEECHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhcC--CCCCHHHHHHHHHHCCCCHHHHHHHHH
Confidence 9999988763222 122346678899999999987655433
No 169
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.46 E-value=8.5e-07 Score=91.53 Aligned_cols=158 Identities=11% Similarity=0.084 Sum_probs=93.5
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhh-cccc-ceEEEEechhhhcccChHHHHHHHHHHHhccccccccchhhhHHHHHHH
Q 003802 16 RFIGICGMGGIGKTTLAKVLYNTLK-DQFE-ASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWR 93 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~~~~-~~f~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~ 93 (794)
+.+.|+|++|+|||++|+.+++.+. ..+. ..+.+.... ......+.+........ ..
T Consensus 39 ~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--------------------~~ 97 (319)
T 2chq_A 39 PHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASD-ERGIDVVRHKIKEFART--------------------AP 97 (319)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTS-TTCTTTSSHHHHHHHHS--------------------CC
T ss_pred CeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCcc-ccChHHHHHHHHHHHhc--------------------CC
Confidence 3489999999999999999998753 2221 123333110 00001111111111100 00
Q ss_pred h-cCCeEEEEEcCCCCh--HHHHHHhcCCCCCCCCCEEEEEeCChh-hhhh-cCcCcEEEcCCCChHhHHHHHHhhccCC
Q 003802 94 L-CRKRVLVILDDVDQL--EQLQALVGNHDWFGFGSRIIITSRDEH-VLKS-HGVTNTYKVRGLDYVEALQLFHLKVSNG 168 (794)
Q Consensus 94 l-~~~r~LlVlDd~~~~--~~~~~l~~~~~~~~~gs~IlvTtR~~~-v~~~-~~~~~~~~l~~L~~~ea~~lf~~~~~~~ 168 (794)
+ .+++.++|+|+++.. ...+.+...+.....++++|+||.... +... ......+++.+++.++..+++...+...
T Consensus 98 ~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~ 177 (319)
T 2chq_A 98 IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKE 177 (319)
T ss_dssp SSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCEEEECCCCCHHHHHHHHHHHHHTT
T ss_pred CCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCeEEEecCCCHHHHHHHHHHHHHHc
Confidence 1 256889999999765 345666666554456777888776543 2111 2233489999999999999998876322
Q ss_pred CCCChhHHHHHHHHHHHhCCCchHHHHH
Q 003802 169 KQPTDYRVELSKYVVNYAGGLPLAIEVL 196 (794)
Q Consensus 169 ~~~~~~~~~~~~~i~~~~~g~Plai~~~ 196 (794)
.. ....+..+.+++.++|.+..+...
T Consensus 178 ~~--~i~~~~l~~l~~~~~G~~r~~~~~ 203 (319)
T 2chq_A 178 GV--KITEDGLEALIYISGGDFRKAINA 203 (319)
T ss_dssp CC--CBCHHHHHHHHHTTTTCHHHHHHH
T ss_pred CC--CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 21 123356778889999998765543
No 170
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.44 E-value=1.7e-07 Score=92.49 Aligned_cols=151 Identities=13% Similarity=0.087 Sum_probs=87.7
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEEechhhhcccChHHHHHHHHHHHhccccccccchhhhHHHHHHH
Q 003802 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWR 93 (794)
Q Consensus 14 ~~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~ 93 (794)
..+.+.|+|++|+|||++|+.+++........+.|+...... . .+ .+.. +.
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~-~--~~----------------------~~~~----~~ 101 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHA-S--IS----------------------TALL----EG 101 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGG-G--SC----------------------GGGG----TT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHH-H--HH----------------------HHHH----Hh
Confidence 356788999999999999999999766554455666521110 0 00 0000 01
Q ss_pred hcCCeEEEEEcCCCChHH----HHHHhcCCCC-CCCCC-EEEEEeCChh---------hhhhcCcCcEEEcCCCChHhHH
Q 003802 94 LCRKRVLVILDDVDQLEQ----LQALVGNHDW-FGFGS-RIIITSRDEH---------VLKSHGVTNTYKVRGLDYVEAL 158 (794)
Q Consensus 94 l~~~r~LlVlDd~~~~~~----~~~l~~~~~~-~~~gs-~IlvTtR~~~---------v~~~~~~~~~~~l~~L~~~ea~ 158 (794)
+ .++-+||+||++.... .+.+...+.. ...+. ++|+||+... +...+.....+++.+++.++..
T Consensus 102 ~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~r~~~~~~i~l~~~~~~~~~ 180 (242)
T 3bos_A 102 L-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDLVSRMHWGLTYQLQPMMDDEKL 180 (242)
T ss_dssp G-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHHHHHHHHSEEEECCCCCGGGHH
T ss_pred c-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhhhhHhhcCceEEeCCCCHHHHH
Confidence 1 3456899999865421 2222221100 01122 4777776421 1111112258999999999999
Q ss_pred HHHHhhccCCCCCChhHHHHHHHHHHHhCCCchHHHHH
Q 003802 159 QLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIEVL 196 (794)
Q Consensus 159 ~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 196 (794)
+++...+..... ....+..+.+++.++|.+..+..+
T Consensus 181 ~~l~~~~~~~~~--~~~~~~~~~l~~~~~g~~r~l~~~ 216 (242)
T 3bos_A 181 AALQRRAAMRGL--QLPEDVGRFLLNRMARDLRTLFDV 216 (242)
T ss_dssp HHHHHHHHHTTC--CCCHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHcCC--CCCHHHHHHHHHHccCCHHHHHHH
Confidence 999887632111 122356778888999887666544
No 171
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.38 E-value=4e-07 Score=97.69 Aligned_cols=158 Identities=16% Similarity=0.150 Sum_probs=92.6
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhhccccc--eEEEEechhhhcccChHHHHHHHHHHHhccccccccchhhhHHHHHH
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEA--SSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRW 92 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~ 92 (794)
...+.|+|++|+||||||+.+++.....++. ++++. .. ....++...+... ....+.+
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~----~~------~~~~~~~~~~~~~----------~~~~~~~ 189 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT----SE------KFLNDLVDSMKEG----------KLNEFRE 189 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEE----HH------HHHHHHHHHHHTT----------CHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee----HH------HHHHHHHHHHHcc----------cHHHHHH
Confidence 5678999999999999999999977665533 34444 11 1223333332111 1223344
Q ss_pred HhcCCeEEEEEcCCCChH----HHHHHhcCCCC-CCCCCEEEEEeCCh---------hhhhhcCcCcEEEcCCCChHhHH
Q 003802 93 RLCRKRVLVILDDVDQLE----QLQALVGNHDW-FGFGSRIIITSRDE---------HVLKSHGVTNTYKVRGLDYVEAL 158 (794)
Q Consensus 93 ~l~~~r~LlVlDd~~~~~----~~~~l~~~~~~-~~~gs~IlvTtR~~---------~v~~~~~~~~~~~l~~L~~~ea~ 158 (794)
.++.+.-+||+||++... ..+.+...+.. ...|..||+||... .+...+.....+.+++++.++..
T Consensus 190 ~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~ 269 (440)
T 2z4s_A 190 KYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRK 269 (440)
T ss_dssp HHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHH
T ss_pred HhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHH
Confidence 444367799999995442 22223222110 13467888888762 12222322346889999999999
Q ss_pred HHHHhhccCC-CCCChhHHHHHHHHHHHhCCCchHHHH
Q 003802 159 QLFHLKVSNG-KQPTDYRVELSKYVVNYAGGLPLAIEV 195 (794)
Q Consensus 159 ~lf~~~~~~~-~~~~~~~~~~~~~i~~~~~g~Plai~~ 195 (794)
+++.+.+... ...+ .++...|++.++|.+..+..
T Consensus 270 ~iL~~~~~~~~~~i~---~e~l~~la~~~~gn~R~l~~ 304 (440)
T 2z4s_A 270 SIARKMLEIEHGELP---EEVLNFVAENVDDNLRRLRG 304 (440)
T ss_dssp HHHHHHHHHHTCCCC---TTHHHHHHHHCCSCHHHHHH
T ss_pred HHHHHHHHHcCCCCC---HHHHHHHHHhcCCCHHHHHH
Confidence 9998876311 1111 24466788888887765543
No 172
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.38 E-value=9.5e-07 Score=93.45 Aligned_cols=182 Identities=12% Similarity=0.057 Sum_probs=97.8
Q ss_pred hhhHhHhcCCCCeEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEEechhhhcccChHHHHHHHHHHHh----ccccc
Q 003802 3 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVL----MERDL 78 (794)
Q Consensus 3 ~l~~~l~~~~~~~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~----~~~~~ 78 (794)
.+.+.+..+. ..+.+.|+|+.|+|||++|+.+++......... ... +. ... ....+..... .....
T Consensus 27 ~L~~~l~~~~-~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~-~~~----~~---~~~-~~~~~~~~~~~~~~~~~~~ 96 (373)
T 1jr3_A 27 ALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT-ATP----CG---VCD-NCREIEQGRFVDLIEIDAA 96 (373)
T ss_dssp HHHHHHHHTC-CCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSC-SSC----CS---SSH-HHHHHHTSCCSSCEEEETT
T ss_pred HHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCC-CCC----Cc---ccH-HHHHHhccCCCceEEeccc
Confidence 4455555432 235788999999999999999998764322110 000 00 000 0111110000 00000
Q ss_pred cccchhhhHHHHHHHh-----cCCeEEEEEcCCCCh--HHHHHHhcCCCCCCCCCEEEEEeCChh-hhh-hcCcCcEEEc
Q 003802 79 IIWDVHKGINLIRWRL-----CRKRVLVILDDVDQL--EQLQALVGNHDWFGFGSRIIITSRDEH-VLK-SHGVTNTYKV 149 (794)
Q Consensus 79 ~~~~~~~~~~~l~~~l-----~~~r~LlVlDd~~~~--~~~~~l~~~~~~~~~gs~IlvTtR~~~-v~~-~~~~~~~~~l 149 (794)
.....+. ...+.+.+ .+++.++|+||++.. ...+.+...+.....+..+|++|.... +.. .......+++
T Consensus 97 ~~~~~~~-~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~~i~~ 175 (373)
T 1jr3_A 97 SRTKVED-TRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHL 175 (373)
T ss_dssp CSCCSSC-HHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCHHHHTTSEEEEC
T ss_pred ccCCHHH-HHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcHHHHhheeEeeC
Confidence 0001111 22233332 246789999999764 334555443332244666777776432 211 1223458899
Q ss_pred CCCChHhHHHHHHhhccCCCCCChhHHHHHHHHHHHhCCCchHHHHHh
Q 003802 150 RGLDYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIEVLG 197 (794)
Q Consensus 150 ~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~a 197 (794)
.+++.++..+++...+..... ....+....|++.++|.|..+..+.
T Consensus 176 ~~l~~~~~~~~l~~~~~~~~~--~~~~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 176 KALDVEQIRHQLEHILNEEHI--AHEPRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp CCCCHHHHHHHHHHHHHHHTC--CBCHHHHHHHHHHSSSCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHCCCCHHHHHHHH
Confidence 999999999999876522111 1123557789999999998776554
No 173
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.36 E-value=1.7e-06 Score=87.17 Aligned_cols=147 Identities=13% Similarity=0.055 Sum_probs=82.1
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHHHHhhccc-----c--ceEEEEechhhhcccChHHHHHHHHHHHhccccccccchhh
Q 003802 13 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQF-----E--ASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHK 85 (794)
Q Consensus 13 ~~~~vi~i~G~~GvGKTtLa~~v~~~~~~~f-----~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 85 (794)
+..+.+.|+|++|+|||++|+.|++...... + ..+++. +....+-..+...+.+++.+... ......+
T Consensus 43 ~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~IN----c~~~~t~~~~~~~I~~~L~g~~~-~~~~~~~ 117 (318)
T 3te6_A 43 SQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHID----ALELAGMDALYEKIWFAISKENL-CGDISLE 117 (318)
T ss_dssp TCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEE----TTCCC--HHHHHHHHHHHSCCC---CCCCHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEe----ccccCCHHHHHHHHHHHhcCCCC-CchHHHH
Confidence 3457889999999999999999999765322 1 234554 23334445667777777644321 1111222
Q ss_pred hHHHHHHHh---cCCeEEEEEcCCCChH---HHHHHhcCCCCCCCCCEEEEEeCChh-----h----hhhcCcCcEEEcC
Q 003802 86 GINLIRWRL---CRKRVLVILDDVDQLE---QLQALVGNHDWFGFGSRIIITSRDEH-----V----LKSHGVTNTYKVR 150 (794)
Q Consensus 86 ~~~~l~~~l---~~~r~LlVlDd~~~~~---~~~~l~~~~~~~~~gs~IlvTtR~~~-----v----~~~~~~~~~~~l~ 150 (794)
....+.+.+ +++++++|+|+++... .+-.+............||.++.... + ...+. ...+.+.
T Consensus 118 ~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~~~L~~~v~SR~~-~~~i~F~ 196 (318)
T 3te6_A 118 ALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNVTIREQINIMPSLKAH-FTEIKLN 196 (318)
T ss_dssp HHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSCCCHHHHHTCHHHHTT-EEEEECC
T ss_pred HHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCcccchhhcchhhhccCC-ceEEEeC
Confidence 233333332 4678999999997752 22222210000011122333343321 1 11221 2478999
Q ss_pred CCChHhHHHHHHhhc
Q 003802 151 GLDYVEALQLFHLKV 165 (794)
Q Consensus 151 ~L~~~ea~~lf~~~~ 165 (794)
+++.+|..+++.+++
T Consensus 197 pYt~~el~~Il~~Rl 211 (318)
T 3te6_A 197 KVDKNELQQMIITRL 211 (318)
T ss_dssp CCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999999998886
No 174
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.33 E-value=2.5e-05 Score=78.19 Aligned_cols=149 Identities=17% Similarity=0.093 Sum_probs=81.3
Q ss_pred CCCeEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEEechhhhcccChHHHHHHHHHHHhccccccccchhhhHHHHH
Q 003802 12 LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIR 91 (794)
Q Consensus 12 ~~~~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~ 91 (794)
....+.+.|+|++|+|||++|+.+++.....| +.+....... ...... ........+.
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~---~~i~~~~~~~-g~~~~~------------------~~~~~~~~~~ 118 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAEESNFPF---IKICSPDKMI-GFSETA------------------KCQAMKKIFD 118 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHHHHTCSE---EEEECGGGCT-TCCHHH------------------HHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHhCCCE---EEEeCHHHhc-CCchHH------------------HHHHHHHHHH
Confidence 44578899999999999999999999753322 2222111000 000000 0011112222
Q ss_pred HHhcCCeEEEEEcCCCCh------------HHHHHHhcCCC---CCCCCCEEEEEeCChhhhhh---cCc-CcEEEcCCC
Q 003802 92 WRLCRKRVLVILDDVDQL------------EQLQALVGNHD---WFGFGSRIIITSRDEHVLKS---HGV-TNTYKVRGL 152 (794)
Q Consensus 92 ~~l~~~r~LlVlDd~~~~------------~~~~~l~~~~~---~~~~gs~IlvTtR~~~v~~~---~~~-~~~~~l~~L 152 (794)
.....++.+||+|+++.. ...+.+...+. .......||.||........ .+. ...++++++
T Consensus 119 ~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~rf~~~i~~p~l 198 (272)
T 1d2n_A 119 DAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNI 198 (272)
T ss_dssp HHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTTTSSEEEECCCE
T ss_pred HHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhhcccceEEcCCCc
Confidence 333467889999998653 12333333222 12233456777776644332 111 456888999
Q ss_pred Ch-HhHHHHHHhhccCCCCCChhHHHHHHHHHHHhCCC
Q 003802 153 DY-VEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGL 189 (794)
Q Consensus 153 ~~-~ea~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 189 (794)
++ ++..+++.+.. .. ..+....+++.+.|.
T Consensus 199 ~~r~~i~~i~~~~~----~~---~~~~~~~l~~~~~g~ 229 (272)
T 1d2n_A 199 ATGEQLLEALELLG----NF---KDKERTTIAQQVKGK 229 (272)
T ss_dssp EEHHHHHHHHHHHT----CS---CHHHHHHHHHHHTTS
T ss_pred cHHHHHHHHHHhcC----CC---CHHHHHHHHHHhcCC
Confidence 88 66666665532 11 134567788888874
No 175
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.29 E-value=1.6e-05 Score=84.13 Aligned_cols=59 Identities=14% Similarity=0.121 Sum_probs=30.9
Q ss_pred CCCCCCCCEEecCCCCCccCCCCccccCCCCCCeEeCCCCCCccCch-hhhccCCCCEEecC
Q 003802 584 FTGLSSLQTLDLSDCNLLEGAIPSDIGSLFSLEAIDLSGNNFFSLPS-SINQLLKLKILCLE 644 (794)
Q Consensus 584 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~L~ 644 (794)
+.++.+|+.+.+..+ +.......|.++.+|+.+.+.++.++.++. .|.+|.+|+.+.|.
T Consensus 259 F~~~~~l~~i~l~~~--i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp 318 (379)
T 4h09_A 259 LQNCTALKTLNFYAK--VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLP 318 (379)
T ss_dssp TTTCTTCCEEEECCC--CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECC
T ss_pred cceeehhcccccccc--ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcC
Confidence 555555666655433 222233345556666666666555555432 35555666666554
No 176
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.28 E-value=9.6e-06 Score=83.76 Aligned_cols=95 Identities=14% Similarity=0.040 Sum_probs=63.5
Q ss_pred CCeEEEEEcCCCChH--HHHHHhcCCCCCCCCCEEEEEeCChh-hhh-hcCcCcEEEcCCCChHhHHHHHHhhccCCCCC
Q 003802 96 RKRVLVILDDVDQLE--QLQALVGNHDWFGFGSRIIITSRDEH-VLK-SHGVTNTYKVRGLDYVEALQLFHLKVSNGKQP 171 (794)
Q Consensus 96 ~~r~LlVlDd~~~~~--~~~~l~~~~~~~~~gs~IlvTtR~~~-v~~-~~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~ 171 (794)
+++-++|+|+++... ..+.++..+.....++.+|++|.... +.. ..+....+++.++++++..+++.+.. ..
T Consensus 107 ~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~----~~ 182 (334)
T 1a5t_A 107 GGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREV----TM 182 (334)
T ss_dssp SSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHC----CC
T ss_pred CCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhc----CC
Confidence 567899999998753 34555554443345677776666542 222 22334589999999999999998875 11
Q ss_pred ChhHHHHHHHHHHHhCCCchHHHHHh
Q 003802 172 TDYRVELSKYVVNYAGGLPLAIEVLG 197 (794)
Q Consensus 172 ~~~~~~~~~~i~~~~~g~Plai~~~a 197 (794)
..+.+..+++.++|.|..+..+.
T Consensus 183 ---~~~~~~~l~~~s~G~~r~a~~~l 205 (334)
T 1a5t_A 183 ---SQDALLAALRLSAGSPGAALALF 205 (334)
T ss_dssp ---CHHHHHHHHHHTTTCHHHHHHTT
T ss_pred ---CHHHHHHHHHHcCCCHHHHHHHh
Confidence 12456789999999997765443
No 177
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.25 E-value=2.6e-06 Score=80.45 Aligned_cols=36 Identities=19% Similarity=0.212 Sum_probs=26.6
Q ss_pred hhhHhHhcCCCCeEEEEEEccCCCcHHHHHHHHHHHhh
Q 003802 3 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLK 40 (794)
Q Consensus 3 ~l~~~l~~~~~~~~vi~i~G~~GvGKTtLa~~v~~~~~ 40 (794)
++.+.+.. ...+.+.|+|++|+|||++|+.+++.+.
T Consensus 33 ~l~~~l~~--~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 33 RTIQVLQR--RTKNNPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp HHHHHHTS--SSSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHhc--CCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 33444433 2345678999999999999999998654
No 178
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.24 E-value=1.3e-05 Score=82.61 Aligned_cols=164 Identities=18% Similarity=0.149 Sum_probs=89.6
Q ss_pred hHhHhcCCCCeEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEEechhhhcccChHHHHHHHHHHHhccccccccchh
Q 003802 5 NGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVH 84 (794)
Q Consensus 5 ~~~l~~~~~~~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 84 (794)
.+++.........+.|+|++|+|||+||+.+++.....-..++++.. . +...++...+..
T Consensus 27 ~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~----~------~~~~~~~~~~~~---------- 86 (324)
T 1l8q_A 27 KEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSA----D------DFAQAMVEHLKK---------- 86 (324)
T ss_dssp HHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEH----H------HHHHHHHHHHHH----------
T ss_pred HHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEH----H------HHHHHHHHHHHc----------
Confidence 33343332235678899999999999999999976443223455541 1 112223222111
Q ss_pred hhHHHHHHHhcCCeEEEEEcCCCChH---H-HHHHhcCCCC-CCCCCEEEEEeCChh---------hhhhcCcCcEEEcC
Q 003802 85 KGINLIRWRLCRKRVLVILDDVDQLE---Q-LQALVGNHDW-FGFGSRIIITSRDEH---------VLKSHGVTNTYKVR 150 (794)
Q Consensus 85 ~~~~~l~~~l~~~r~LlVlDd~~~~~---~-~~~l~~~~~~-~~~gs~IlvTtR~~~---------v~~~~~~~~~~~l~ 150 (794)
.....+.+.. .++-+|++||++... . .+.+...+.. ...+..||+|+.... +...+.....+++.
T Consensus 87 ~~~~~~~~~~-~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~ 165 (324)
T 1l8q_A 87 GTINEFRNMY-KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIE 165 (324)
T ss_dssp TCHHHHHHHH-HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECC
T ss_pred CcHHHHHHHh-cCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEEEeC
Confidence 0112222222 236799999996543 1 2222221110 123567888876431 11222223578999
Q ss_pred CCChHhHHHHHHhhccCCCCCChhHHHHHHHHHHHhCCCchHH
Q 003802 151 GLDYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAI 193 (794)
Q Consensus 151 ~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 193 (794)
+ +.++..+++...+..... ....+....|++.+ |....+
T Consensus 166 ~-~~~e~~~il~~~~~~~~~--~l~~~~l~~l~~~~-g~~r~l 204 (324)
T 1l8q_A 166 L-DNKTRFKIIKEKLKEFNL--ELRKEVIDYLLENT-KNVREI 204 (324)
T ss_dssp C-CHHHHHHHHHHHHHHTTC--CCCHHHHHHHHHHC-SSHHHH
T ss_pred C-CHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHhC-CCHHHH
Confidence 9 999999999887632111 12235567788888 776543
No 179
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.23 E-value=1e-05 Score=85.28 Aligned_cols=189 Identities=13% Similarity=0.017 Sum_probs=94.7
Q ss_pred hhHhHhcCCCCeEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEEechhhhcccChHHHHHHHHHHHhccc-------
Q 003802 4 MNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMER------- 76 (794)
Q Consensus 4 l~~~l~~~~~~~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~------- 76 (794)
+.+.+..+....+.+.|+|++|+|||++|+.+++......+. +.+....-.+......+...+.+.......
T Consensus 59 l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (368)
T 3uk6_A 59 VLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPF-TAIAGSEIFSLEMSKTEALTQAFRRSIGVRIKAGAVH 137 (368)
T ss_dssp HHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCE-EEEEGGGGSCSSSCHHHHHHHHHHHSBEECC------
T ss_pred HHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCc-ccccchhhhhcccchhHHHHHHHHHHHHHHhhhhccc
Confidence 344444444334688999999999999999999987643222 222211111111222222222222211000
Q ss_pred ---------------------ccc-ccchhhhHHHHHHHh-----cCC----eEEEEEcCCCCh--HHHHHHhcCCCCCC
Q 003802 77 ---------------------DLI-IWDVHKGINLIRWRL-----CRK----RVLVILDDVDQL--EQLQALVGNHDWFG 123 (794)
Q Consensus 77 ---------------------~~~-~~~~~~~~~~l~~~l-----~~~----r~LlVlDd~~~~--~~~~~l~~~~~~~~ 123 (794)
... ..........+.+.. .++ +.+|+||+++.. +....+...+....
T Consensus 138 ~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~~l~~~~~~~L~~~le~~~ 217 (368)
T 3uk6_A 138 TVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHMLDIESFSFLNRALESDM 217 (368)
T ss_dssp CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGGGSBHHHHHHHHHHTTCTT
T ss_pred cccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhccccChHHHHHHHHHhhCcC
Confidence 000 000111112221111 133 459999999765 33444544443222
Q ss_pred CCCEEEEEeCC-------------hhhh-hhcCcCcEEEcCCCChHhHHHHHHhhccCCCCCChhHHHHHHHHHHHhC-C
Q 003802 124 FGSRIIITSRD-------------EHVL-KSHGVTNTYKVRGLDYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAG-G 188 (794)
Q Consensus 124 ~gs~IlvTtR~-------------~~v~-~~~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~-g 188 (794)
. ..++++|.. ..+. ........+.+.+++.++..+++..++..... ....+..+.|++.+. |
T Consensus 218 ~-~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~~~~--~~~~~~l~~l~~~~~~G 294 (368)
T 3uk6_A 218 A-PVLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRIRCEEEDV--EMSEDAYTVLTRIGLET 294 (368)
T ss_dssp C-CEEEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHHHHHHHHHHTTC--CBCHHHHHHHHHHHHHS
T ss_pred C-CeeeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHhcCC
Confidence 2 234444431 1111 11122335799999999999999877632211 123356778888887 7
Q ss_pred CchHHHHH
Q 003802 189 LPLAIEVL 196 (794)
Q Consensus 189 ~Plai~~~ 196 (794)
.|..+..+
T Consensus 295 ~~r~~~~l 302 (368)
T 3uk6_A 295 SLRYAIQL 302 (368)
T ss_dssp CHHHHHHH
T ss_pred CHHHHHHH
Confidence 77665543
No 180
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.12 E-value=4.7e-06 Score=86.08 Aligned_cols=154 Identities=14% Similarity=0.014 Sum_probs=89.4
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEEechhhhcccChHHHHHHHHHHHhccccccccchhhhHHHHHHHh
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWRL 94 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l 94 (794)
.+.|.|+|++|+|||++|+.+++..... .+++. ....... .++... +...+
T Consensus 38 ~~~vll~G~~GtGKT~la~~i~~~~~~~---~~~~~----~~~~~~~----~~l~~~------------------l~~~~ 88 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHVIAHELGVN---LRVTS----GPAIEKP----GDLAAI------------------LANSL 88 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHHHHHHHTCC---EEEEC----TTTCCSH----HHHHHH------------------HTTTC
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHhCCC---EEEEe----ccccCCh----HHHHHH------------------HHHhc
Confidence 4678899999999999999999876432 23333 1111111 111111 11101
Q ss_pred cCCeEEEEEcCCCChH--HHHHHhcCCCC------------------CCCCCEEEEEeCChh-hhhhc-C-cCcEEEcCC
Q 003802 95 CRKRVLVILDDVDQLE--QLQALVGNHDW------------------FGFGSRIIITSRDEH-VLKSH-G-VTNTYKVRG 151 (794)
Q Consensus 95 ~~~r~LlVlDd~~~~~--~~~~l~~~~~~------------------~~~gs~IlvTtR~~~-v~~~~-~-~~~~~~l~~ 151 (794)
.++.+|++|+++... ....+...+.. ..++.++|.||.... +...+ . ....+++.+
T Consensus 89 -~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~R~~~~i~l~~ 167 (324)
T 1hqc_A 89 -EEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEY 167 (324)
T ss_dssp -CTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTTTCSCEEECCC
T ss_pred -cCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHHhcccEEEecCC
Confidence 356689999997753 22323211110 012455666666432 11111 1 124789999
Q ss_pred CChHhHHHHHHhhccCCCCCChhHHHHHHHHHHHhCCCchHHHHHhhhh
Q 003802 152 LDYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIEVLGSFL 200 (794)
Q Consensus 152 L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~a~~L 200 (794)
++.++..+++.+.+..... ....+..+.+++.++|.|..+..+...+
T Consensus 168 ~~~~e~~~~l~~~~~~~~~--~~~~~~~~~l~~~~~G~~r~l~~~l~~~ 214 (324)
T 1hqc_A 168 YTPEELAQGVMRDARLLGV--RITEEAALEIGRRSRGTMRVAKRLFRRV 214 (324)
T ss_dssp CCHHHHHHHHHHHHHTTTC--CCCHHHHHHHHHHSCSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 9999999999887633221 1223667889999999998877665443
No 181
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.10 E-value=1.8e-05 Score=79.88 Aligned_cols=157 Identities=16% Similarity=0.187 Sum_probs=83.2
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEEechhhhcccChHHHHHHHHHHHhccccccccchhhhHHHHHHH
Q 003802 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWR 93 (794)
Q Consensus 14 ~~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~ 93 (794)
..+.+.|+|++|+|||++|+.+++.....| +.+.. ...... .... .. ......+...
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~~~~~~~---~~v~~-~~~~~~-~~~~-~~-----------------~~~~~~~~~~ 106 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVATETNATF---IRVVG-SELVKK-FIGE-GA-----------------SLVKDIFKLA 106 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHHHTTCEE---EEEEG-GGGCCC-STTH-HH-----------------HHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhCCCE---EEEeh-HHHHHh-ccch-HH-----------------HHHHHHHHHH
Confidence 345688999999999999999998764332 22221 111000 0000 00 0111122222
Q ss_pred hcCCeEEEEEcCCCCh-------------H---HHHHHhcCCC--CCCCCCEEEEEeCChhhhh-h-c---CcCcEEEcC
Q 003802 94 LCRKRVLVILDDVDQL-------------E---QLQALVGNHD--WFGFGSRIIITSRDEHVLK-S-H---GVTNTYKVR 150 (794)
Q Consensus 94 l~~~r~LlVlDd~~~~-------------~---~~~~l~~~~~--~~~~gs~IlvTtR~~~v~~-~-~---~~~~~~~l~ 150 (794)
...++.+|+||+++.. . .+..+..... ....+..||.||....... . . .....+.+.
T Consensus 107 ~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~ 186 (285)
T 3h4m_A 107 KEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVP 186 (285)
T ss_dssp HHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECC
T ss_pred HHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEEC
Confidence 3356789999999654 1 1222222111 1123566777777543211 1 1 223468899
Q ss_pred CCChHhHHHHHHhhccCCCCCChhHHHHHHHHHHHhCC-CchHHHHH
Q 003802 151 GLDYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGG-LPLAIEVL 196 (794)
Q Consensus 151 ~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Plai~~~ 196 (794)
..+.++..+++...+........ .....+++.+.| .|-.+..+
T Consensus 187 ~p~~~~r~~il~~~~~~~~~~~~---~~~~~l~~~~~g~~~~~i~~l 230 (285)
T 3h4m_A 187 APDEKGRLEILKIHTRKMNLAED---VNLEEIAKMTEGCVGAELKAI 230 (285)
T ss_dssp CCCHHHHHHHHHHHHTTSCBCTT---CCHHHHHHHCTTCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCCCCc---CCHHHHHHHcCCCCHHHHHHH
Confidence 99999999999887633221111 124566777766 44444443
No 182
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.09 E-value=1.3e-05 Score=83.83 Aligned_cols=168 Identities=14% Similarity=0.152 Sum_probs=89.4
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhhc--cccc-eEEEEechhhhcccChHHHHHHHHHHHhccccccccchhhhHHHHHHH
Q 003802 17 FIGICGMGGIGKTTLAKVLYNTLKD--QFEA-SSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWR 93 (794)
Q Consensus 17 vi~i~G~~GvGKTtLa~~v~~~~~~--~f~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~ 93 (794)
.+.|+|+.|+|||++|+.+++.+.. .+.. .+.+. .+..... ....+............. ... .....
T Consensus 60 ~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~----~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~---~~~~~ 129 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELN----ASDERGI-SIVREKVKNFARLTVSKP--SKH---DLENY 129 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEEC----SSSCCCH-HHHTTHHHHHHHSCCCCC--CTT---HHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEc----cccccch-HHHHHHHHHHhhhccccc--chh---hcccC
Confidence 3889999999999999999986532 1222 22222 1111111 112222222111100000 000 00011
Q ss_pred hcCCeEEEEEcCCCChH--HHHHHhcCCCCCCCCCEEEEEeCChh-hhhh-cCcCcEEEcCCCChHhHHHHHHhhccCCC
Q 003802 94 LCRKRVLVILDDVDQLE--QLQALVGNHDWFGFGSRIIITSRDEH-VLKS-HGVTNTYKVRGLDYVEALQLFHLKVSNGK 169 (794)
Q Consensus 94 l~~~r~LlVlDd~~~~~--~~~~l~~~~~~~~~gs~IlvTtR~~~-v~~~-~~~~~~~~l~~L~~~ea~~lf~~~~~~~~ 169 (794)
-.+++-++|+|+++... ....+...+.......++|++|.... +... ......+++.+++.++...++...+....
T Consensus 130 ~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~l~~~~~~~~ 209 (353)
T 1sxj_D 130 PCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKFRFKALDASNAIDRLRFISEQEN 209 (353)
T ss_dssp CCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSEEEECCCCCHHHHHHHHHHHHHTTT
T ss_pred CCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccCceEEeCCCCHHHHHHHHHHHHHHhC
Confidence 12356799999986542 23444333222234566777765432 2111 11234789999999999999988763222
Q ss_pred CCChhHHHHHHHHHHHhCCCchHHHHH
Q 003802 170 QPTDYRVELSKYVVNYAGGLPLAIEVL 196 (794)
Q Consensus 170 ~~~~~~~~~~~~i~~~~~g~Plai~~~ 196 (794)
. ...++..+.|++.++|.|..+..+
T Consensus 210 ~--~i~~~~l~~l~~~~~G~~r~~~~~ 234 (353)
T 1sxj_D 210 V--KCDDGVLERILDISAGDLRRGITL 234 (353)
T ss_dssp C--CCCHHHHHHHHHHTSSCHHHHHHH
T ss_pred C--CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 1 122456788999999999865543
No 183
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.09 E-value=8e-07 Score=83.12 Aligned_cols=86 Identities=16% Similarity=0.125 Sum_probs=43.4
Q ss_pred cCccccccccccccccccc----cccccCCCCCccEEEecCCCCCCC----CCccccCCCCCcEEEc--cCccCcc----
Q 003802 467 GTLKRLILLNLKDCRNLVS----FPKNVCLMKSLKILCLCGCLKLEK----LPQDLGEVECLEELDV--GGTAIRQ---- 532 (794)
Q Consensus 467 ~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~L~~~~~~~~----~~~~~~~l~~L~~L~l--~~~~l~~---- 532 (794)
...++|++|+|++|.+... +...+...++|++|+|++|.+... +...+...++|++|++ ++|.++.
T Consensus 62 ~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~ 141 (185)
T 1io0_A 62 KTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEM 141 (185)
T ss_dssp TTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHH
T ss_pred HhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHH
Confidence 3334444444444443221 222333345556666666554432 2334455556666666 5566652
Q ss_pred -cCcccccCCCCCEEEcCCCC
Q 003802 533 -IPPSIVQLVNLKIFSLHGCK 552 (794)
Q Consensus 533 -l~~~l~~l~~L~~L~l~~~~ 552 (794)
+...+...++|++|++++|.
T Consensus 142 ~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 142 EIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHHhCCCcCEEeccCCC
Confidence 33445555667777776665
No 184
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.08 E-value=2e-05 Score=84.30 Aligned_cols=163 Identities=18% Similarity=0.197 Sum_probs=91.0
Q ss_pred hhHhHhcCCCCeEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEEechhhhcccChHHHHHHHHHHHhccccccccch
Q 003802 4 MNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDV 83 (794)
Q Consensus 4 l~~~l~~~~~~~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 83 (794)
+...+..+. .+.+.|+|++|+||||+|+.+++.....|. .+.. ...... ..++++...
T Consensus 41 L~~~i~~~~--~~~vLL~GppGtGKTtlAr~ia~~~~~~f~---~l~a-----~~~~~~-~ir~~~~~a----------- 98 (447)
T 3pvs_A 41 LPRAIEAGH--LHSMILWGPPGTGKTTLAEVIARYANADVE---RISA-----VTSGVK-EIREAIERA----------- 98 (447)
T ss_dssp HHHHHHHTC--CCEEEEECSTTSSHHHHHHHHHHHTTCEEE---EEET-----TTCCHH-HHHHHHHHH-----------
T ss_pred HHHHHHcCC--CcEEEEECCCCCcHHHHHHHHHHHhCCCeE---EEEe-----ccCCHH-HHHHHHHHH-----------
Confidence 444555433 367899999999999999999997654332 1211 111111 112222110
Q ss_pred hhhHHHHHHHhcCCeEEEEEcCCCChHH--HHHHhcCCCCCCCCCEEEE-EeCChh--h-hhhcCcCcEEEcCCCChHhH
Q 003802 84 HKGINLIRWRLCRKRVLVILDDVDQLEQ--LQALVGNHDWFGFGSRIII-TSRDEH--V-LKSHGVTNTYKVRGLDYVEA 157 (794)
Q Consensus 84 ~~~~~~l~~~l~~~r~LlVlDd~~~~~~--~~~l~~~~~~~~~gs~Ilv-TtR~~~--v-~~~~~~~~~~~l~~L~~~ea 157 (794)
......+++.+|+||+++.... .+.++..+.. ....+|. ||.+.. + .........+.+.+++.++.
T Consensus 99 ------~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~--~~v~lI~att~n~~~~l~~aL~sR~~v~~l~~l~~edi 170 (447)
T 3pvs_A 99 ------RQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED--GTITFIGATTENPSFELNSALLSRARVYLLKSLSTEDI 170 (447)
T ss_dssp ------HHHHHTTCCEEEEEETTTCC------CCHHHHHT--TSCEEEEEESSCGGGSSCHHHHTTEEEEECCCCCHHHH
T ss_pred ------HHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhc--CceEEEecCCCCcccccCHHHhCceeEEeeCCcCHHHH
Confidence 0011146788999999976642 3333333321 2234444 444432 1 11223344788999999999
Q ss_pred HHHHHhhccCCC-----CCChhHHHHHHHHHHHhCCCchHHHHH
Q 003802 158 LQLFHLKVSNGK-----QPTDYRVELSKYVVNYAGGLPLAIEVL 196 (794)
Q Consensus 158 ~~lf~~~~~~~~-----~~~~~~~~~~~~i~~~~~g~Plai~~~ 196 (794)
..++.+.+.... .......+..+.|++.++|.+..+..+
T Consensus 171 ~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~ 214 (447)
T 3pvs_A 171 EQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNT 214 (447)
T ss_dssp HHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHH
T ss_pred HHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHH
Confidence 999988763311 111233466778888899988665543
No 185
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.08 E-value=9.1e-05 Score=73.64 Aligned_cols=159 Identities=18% Similarity=0.160 Sum_probs=82.7
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEEechhhhcccChHHHHHHHHHHHhccccccccchhhhHHHHHHH
Q 003802 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWR 93 (794)
Q Consensus 14 ~~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~ 93 (794)
..+.|.|+|++|+|||++|+.+++.....| +.+.... ...... .. ........+...
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~~~~~---~~~~~~~-~~~~~~--~~-----------------~~~~~~~~~~~a 94 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEAQVPF---LAMAGAE-FVEVIG--GL-----------------GAARVRSLFKEA 94 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHTCCE---EEEETTT-TSSSST--TH-----------------HHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCE---EEechHH-HHhhcc--Ch-----------------hHHHHHHHHHHH
Confidence 345688999999999999999999764332 3333111 100000 00 001111222222
Q ss_pred hcCCeEEEEEcCCCChH-----------------HHHHHhcCCCC--CCCCCEEEEEeCChhhh-hh-c---CcCcEEEc
Q 003802 94 LCRKRVLVILDDVDQLE-----------------QLQALVGNHDW--FGFGSRIIITSRDEHVL-KS-H---GVTNTYKV 149 (794)
Q Consensus 94 l~~~r~LlVlDd~~~~~-----------------~~~~l~~~~~~--~~~gs~IlvTtR~~~v~-~~-~---~~~~~~~l 149 (794)
....+.+|++|+++... .+..+...+.. ...+..||.||...... .. . .....+.+
T Consensus 95 ~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i 174 (262)
T 2qz4_A 95 RARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFI 174 (262)
T ss_dssp HHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGSGGGSTTSCCEEEEC
T ss_pred HhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCHHHhcCCcCCeEEEe
Confidence 33567899999997651 12223221111 12345666677654321 11 1 12357788
Q ss_pred CCCChHhHHHHHHhhccCCCCCChhHHHHHHHHHHHhCCCch-HHHHH
Q 003802 150 RGLDYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPL-AIEVL 196 (794)
Q Consensus 150 ~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-ai~~~ 196 (794)
...+.++..+++...+..... ..........+++.+.|.+- .+..+
T Consensus 175 ~~p~~~~r~~il~~~~~~~~~-~~~~~~~~~~l~~~~~g~~~~~l~~l 221 (262)
T 2qz4_A 175 DLPTLQERREIFEQHLKSLKL-TQSSTFYSQRLAELTPGFSGADIANI 221 (262)
T ss_dssp CSCCHHHHHHHHHHHHHHTTC-CBTHHHHHHHHHHTCTTCCHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHhCCC-CcchhhHHHHHHHHCCCCCHHHHHHH
Confidence 899999999998877632211 11222234677888877654 44433
No 186
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.08 E-value=2.3e-05 Score=86.01 Aligned_cols=164 Identities=18% Similarity=0.149 Sum_probs=85.4
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEEechhhhcccChHHHHHHHHHHHhccccccccchhhhHHHHHH--
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRW-- 92 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~-- 92 (794)
.+.+.|+|++|+|||++|+.+++... ++ ++.+. .+.... .......+....... ..........+
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~~l~--~~-~i~in----~s~~~~-~~~~~~~i~~~~~~~-----~~~~~~~~~~~~~ 143 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQELG--YD-ILEQN----ASDVRS-KTLLNAGVKNALDNM-----SVVGYFKHNEEAQ 143 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHTT--CE-EEEEC----TTSCCC-HHHHHHTGGGGTTBC-----CSTTTTTC----C
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC--CC-EEEEe----CCCcch-HHHHHHHHHHHhccc-----cHHHHHhhhhhhh
Confidence 47899999999999999999999762 22 23332 221111 112222221111100 00000000000
Q ss_pred HhcCCeEEEEEcCCCChH-----HHHHHhcCCCCCCCCCEEEEEeCChh---hhhhcCcCcEEEcCCCChHhHHHHHHhh
Q 003802 93 RLCRKRVLVILDDVDQLE-----QLQALVGNHDWFGFGSRIIITSRDEH---VLKSHGVTNTYKVRGLDYVEALQLFHLK 164 (794)
Q Consensus 93 ~l~~~r~LlVlDd~~~~~-----~~~~l~~~~~~~~~gs~IlvTtR~~~---v~~~~~~~~~~~l~~L~~~ea~~lf~~~ 164 (794)
...+++.+||+|+++... .+..+..... ..+..||+++.... +.........+++.+++.++..+++.+.
T Consensus 144 ~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~--~~~~~iIli~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i 221 (516)
T 1sxj_A 144 NLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCR--KTSTPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTI 221 (516)
T ss_dssp CSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHH--HCSSCEEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHH
T ss_pred hccCCCeEEEEECCCccchhhHHHHHHHHHHHH--hcCCCEEEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHH
Confidence 123578899999996541 1223322211 12334555554322 2222233457899999999999988776
Q ss_pred ccCCC-CCChhHHHHHHHHHHHhCCCchH-HHHH
Q 003802 165 VSNGK-QPTDYRVELSKYVVNYAGGLPLA-IEVL 196 (794)
Q Consensus 165 ~~~~~-~~~~~~~~~~~~i~~~~~g~Pla-i~~~ 196 (794)
+.... ... ++....|++.++|.+.. +..+
T Consensus 222 ~~~~~~~i~---~~~l~~la~~s~GdiR~~i~~L 252 (516)
T 1sxj_A 222 AIREKFKLD---PNVIDRLIQTTRGDIRQVINLL 252 (516)
T ss_dssp HHHHTCCCC---TTHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHcCCCCC---HHHHHHHHHHcCCcHHHHHHHH
Confidence 53211 111 24567888999995544 4443
No 187
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.07 E-value=2.9e-05 Score=79.80 Aligned_cols=158 Identities=18% Similarity=0.146 Sum_probs=85.4
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEEechhhhcccChHHHHHHHHHHHhccccccccchhhhHHHH-HHH
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLI-RWR 93 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l-~~~ 93 (794)
.+-|.|+|++|+|||++|+.+++.....| +.+.. + ++..... .+.+.....+ ...
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~~~~~~---~~v~~----~----------~l~~~~~-------g~~~~~~~~~f~~a 106 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATEANSTF---FSVSS----S----------DLVSKWM-------GESEKLVKQLFAMA 106 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHHHTCEE---EEEEH----H----------HHHTTTG-------GGHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHCCCE---EEEch----H----------HHhhccc-------chHHHHHHHHHHHH
Confidence 46788999999999999999999764432 22321 1 0111000 0111112222 222
Q ss_pred hcCCeEEEEEcCCCChH-------------HHHHHhcCC---CCCCCCCEEEEEeCChhhh-hhc--CcCcEEEcCCCCh
Q 003802 94 LCRKRVLVILDDVDQLE-------------QLQALVGNH---DWFGFGSRIIITSRDEHVL-KSH--GVTNTYKVRGLDY 154 (794)
Q Consensus 94 l~~~r~LlVlDd~~~~~-------------~~~~l~~~~---~~~~~gs~IlvTtR~~~v~-~~~--~~~~~~~l~~L~~ 154 (794)
...++.+|+||+++... ....+...+ .....+..||.||...... ..+ .....+.+...+.
T Consensus 107 ~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~ 186 (322)
T 3eie_A 107 RENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDL 186 (322)
T ss_dssp HHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGGGSCHHHHHHCCEEEECCCCCH
T ss_pred HhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCChhhCCHHHHcccCeEEEeCCCCH
Confidence 23567899999996441 122222211 1123455566677653221 111 1234678888899
Q ss_pred HhHHHHHHhhccCCCCCChhHHHHHHHHHHHhCCC-chHHHHHhh
Q 003802 155 VEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGL-PLAIEVLGS 198 (794)
Q Consensus 155 ~ea~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plai~~~a~ 198 (794)
++..++++..+...... ........|++.+.|. +-.|..++.
T Consensus 187 ~~r~~il~~~~~~~~~~--~~~~~l~~la~~t~g~sg~di~~l~~ 229 (322)
T 3eie_A 187 AARTTMFEINVGDTPCV--LTKEDYRTLGAMTEGYSGSDIAVVVK 229 (322)
T ss_dssp HHHHHHHHHHHTTCCCC--CCHHHHHHHHHTTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCC--CCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 99999998877432211 1124566788888773 444444433
No 188
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.03 E-value=1e-05 Score=84.03 Aligned_cols=162 Identities=12% Similarity=0.082 Sum_probs=90.1
Q ss_pred hhhHhHhcC---CCCeEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEEechhhhcccChHHHHHHHHHHHhcccccc
Q 003802 3 KMNGYLEAG---LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLI 79 (794)
Q Consensus 3 ~l~~~l~~~---~~~~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 79 (794)
++..++... ....+.|.|+|++|+|||++|+.+++.....| +.+. ........ ...
T Consensus 40 ~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~---~~~~----~~~~~~~~-~~~------------- 98 (338)
T 3pfi_A 40 NLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSANI---KTTA----APMIEKSG-DLA------------- 98 (338)
T ss_dssp HHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCE---EEEE----GGGCCSHH-HHH-------------
T ss_pred HHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCe---EEec----chhccchh-HHH-------------
Confidence 444555431 23345688999999999999999988764432 2232 11111100 001
Q ss_pred ccchhhhHHHHHHHhcCCeEEEEEcCCCChH--HHHHHhcCCCC------------------CCCCCEEEEEeCChhh-h
Q 003802 80 IWDVHKGINLIRWRLCRKRVLVILDDVDQLE--QLQALVGNHDW------------------FGFGSRIIITSRDEHV-L 138 (794)
Q Consensus 80 ~~~~~~~~~~l~~~l~~~r~LlVlDd~~~~~--~~~~l~~~~~~------------------~~~gs~IlvTtR~~~v-~ 138 (794)
..+.. ..+..+|+||+++... ....+...+.. ..++..+|.||..... .
T Consensus 99 --------~~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~ 168 (338)
T 3pfi_A 99 --------AILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLS 168 (338)
T ss_dssp --------HHHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCGGGSC
T ss_pred --------HHHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCccccC
Confidence 11111 2356788999987652 22222221110 0123456666654321 1
Q ss_pred hh-c-CcCcEEEcCCCChHhHHHHHHhhccCCCCCChhHHHHHHHHHHHhCCCchHHHHHh
Q 003802 139 KS-H-GVTNTYKVRGLDYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIEVLG 197 (794)
Q Consensus 139 ~~-~-~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~a 197 (794)
.. . .....+.+.+++.++...++.+.+.... .....+..+.+++.+.|.|..+..+.
T Consensus 169 ~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~--~~~~~~~~~~l~~~~~G~~r~l~~~l 227 (338)
T 3pfi_A 169 NPLRDRFGMQFRLEFYKDSELALILQKAALKLN--KTCEEKAALEIAKRSRSTPRIALRLL 227 (338)
T ss_dssp HHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTT--CEECHHHHHHHHHTTTTCHHHHHHHH
T ss_pred HHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHCcCHHHHHHHH
Confidence 11 1 1235799999999999999987763221 12234567788889999986655443
No 189
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.02 E-value=3.1e-06 Score=88.65 Aligned_cols=99 Identities=12% Similarity=0.146 Sum_probs=60.5
Q ss_pred CCeEEEEEcCCCChHH--HHHHhcCCCCCCCCCEEEEEeCCh-hhhh-hcCcCcEEEcCCCChHhHHHHHHhhccCCCCC
Q 003802 96 RKRVLVILDDVDQLEQ--LQALVGNHDWFGFGSRIIITSRDE-HVLK-SHGVTNTYKVRGLDYVEALQLFHLKVSNGKQP 171 (794)
Q Consensus 96 ~~r~LlVlDd~~~~~~--~~~l~~~~~~~~~gs~IlvTtR~~-~v~~-~~~~~~~~~l~~L~~~ea~~lf~~~~~~~~~~ 171 (794)
+++-++|+|+++..+. .+.+...+.....+..+|++|... .+.. .......+++.+++.++..+++...+.....
T Consensus 133 ~~~~vlilDE~~~L~~~~~~~L~~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~- 211 (354)
T 1sxj_E 133 HRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERI- 211 (354)
T ss_dssp -CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC-
T ss_pred CCCeEEEEeCccccCHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCC-
Confidence 4677999999976532 333333222123466777777653 2222 1223368999999999999999877622111
Q ss_pred ChhH-HHHHHHHHHHhCCCchHHHHH
Q 003802 172 TDYR-VELSKYVVNYAGGLPLAIEVL 196 (794)
Q Consensus 172 ~~~~-~~~~~~i~~~~~g~Plai~~~ 196 (794)
... ++....|++.++|.+..+..+
T Consensus 212 -~~~~~~~l~~i~~~~~G~~r~a~~~ 236 (354)
T 1sxj_E 212 -QLETKDILKRIAQASNGNLRVSLLM 236 (354)
T ss_dssp -EECCSHHHHHHHHHHTTCHHHHHHH
T ss_pred -CCCcHHHHHHHHHHcCCCHHHHHHH
Confidence 111 256778899999988765544
No 190
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.99 E-value=2.2e-06 Score=77.76 Aligned_cols=67 Identities=19% Similarity=0.375 Sum_probs=42.1
Q ss_pred CCCCCCCCEEecCCCCCccCCCCccccCC----CCCCeEeCCCC-CCc--cCchhhhccCCCCEEecCCCcCCCC
Q 003802 584 FTGLSSLQTLDLSDCNLLEGAIPSDIGSL----FSLEAIDLSGN-NFF--SLPSSINQLLKLKILCLEKCRNLKS 651 (794)
Q Consensus 584 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~l----~~L~~L~L~~n-~l~--~lp~~l~~l~~L~~L~L~~n~~~~~ 651 (794)
+.++++|+.|+|++|..+++.....+..+ ++|++|+|++| +++ .+. .+..+++|++|+|++|+.+++
T Consensus 81 L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~-~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 81 MEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGII-ALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp GTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHH-HGGGCTTCCEEEEESCTTCCC
T ss_pred hcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHH-HHhcCCCCCEEECCCCCCCCc
Confidence 45666777777777765554444444443 36777777777 466 232 456677777777777765544
No 191
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.98 E-value=1.6e-05 Score=81.51 Aligned_cols=129 Identities=11% Similarity=0.084 Sum_probs=71.5
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHHHhhcccc----ceEEEEechhhhcccChHHHHHHHHHHHhccccccccchhhhHHH
Q 003802 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFE----ASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINL 89 (794)
Q Consensus 14 ~~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 89 (794)
....|.|+|++|+|||++|+.+++.+..... ..+.+.. .... ....+ .........
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~-~~l~-------------~~~~g------~~~~~~~~~ 125 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTR-DDLV-------------GQYIG------HTAPKTKEV 125 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECG-GGTC-------------CSSTT------CHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcH-HHhh-------------hhccc------ccHHHHHHH
Confidence 3457889999999999999999986543211 2233321 0000 00000 000111111
Q ss_pred HHHHhcCCeEEEEEcCCCC-----------hHHHHHHhcCCCCCCCCCEEEEEeCChhhhhh------c--CcCcEEEcC
Q 003802 90 IRWRLCRKRVLVILDDVDQ-----------LEQLQALVGNHDWFGFGSRIIITSRDEHVLKS------H--GVTNTYKVR 150 (794)
Q Consensus 90 l~~~l~~~r~LlVlDd~~~-----------~~~~~~l~~~~~~~~~gs~IlvTtR~~~v~~~------~--~~~~~~~l~ 150 (794)
+.. . +.-+|++|+++. ......+...+.....+..||.||........ + .....+.++
T Consensus 126 ~~~-~--~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~R~~~~i~~~ 202 (309)
T 3syl_A 126 LKR-A--MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADRMENFFQSNPGFRSRIAHHIEFP 202 (309)
T ss_dssp HHH-H--TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECHHHHHHHHHHSTTHHHHEEEEEEEC
T ss_pred HHh-c--CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCChHHHHHHHhhCHHHHHhCCeEEEcC
Confidence 111 1 345999999973 33344444433323456678888765322110 0 112578999
Q ss_pred CCChHhHHHHHHhhc
Q 003802 151 GLDYVEALQLFHLKV 165 (794)
Q Consensus 151 ~L~~~ea~~lf~~~~ 165 (794)
+++.++..+++...+
T Consensus 203 ~~~~~~~~~il~~~l 217 (309)
T 3syl_A 203 DYSDEELFEIAGHML 217 (309)
T ss_dssp CCCHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHH
Confidence 999999999998776
No 192
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.97 E-value=1.7e-06 Score=80.95 Aligned_cols=60 Identities=12% Similarity=0.135 Sum_probs=35.3
Q ss_pred CCCCEEecCCCCCccC---CCCccccCCCCCCeEeC--CCCCCcc-----CchhhhccCCCCEEecCCCc
Q 003802 588 SSLQTLDLSDCNLLEG---AIPSDIGSLFSLEAIDL--SGNNFFS-----LPSSINQLLKLKILCLEKCR 647 (794)
Q Consensus 588 ~~L~~L~l~~n~~~~~---~~~~~~~~l~~L~~L~L--~~n~l~~-----lp~~l~~l~~L~~L~L~~n~ 647 (794)
++|++|+|++|.+... .+...+...++|++|+| ++|.++. +...+...++|++|+|++|.
T Consensus 93 ~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 93 NTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp SSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred CCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 3555666666653211 12344555667777777 6676662 44455666777777777775
No 193
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.96 E-value=0.00013 Score=74.56 Aligned_cols=159 Identities=13% Similarity=0.068 Sum_probs=84.2
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEEechhhhcccChHHHHHHHHHHHhccccccccchhhhHHHHHH-H
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRW-R 93 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~-~ 93 (794)
.+-|.|+|++|+|||++|+.+++..... ..+.+....-.+. . ..+.+.....+.+ .
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~~~~~--~~~~i~~~~l~~~------------------~---~g~~~~~~~~lf~~a 101 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATEANNS--TFFSISSSDLVSK------------------W---LGESEKLVKNLFQLA 101 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHTTSC--EEEEEECCSSCCS------------------S---CCSCHHHHHHHHHHH
T ss_pred CceEEEECCCCccHHHHHHHHHHHcCCC--cEEEEEhHHHHhh------------------h---hhHHHHHHHHHHHHH
Confidence 4678899999999999999999976211 1122321100000 0 0011111222222 2
Q ss_pred hcCCeEEEEEcCCCChH-------------HHHHHhcCC---CCCCCCCEEEEEeCChh-hhhhc--CcCcEEEcCCCCh
Q 003802 94 LCRKRVLVILDDVDQLE-------------QLQALVGNH---DWFGFGSRIIITSRDEH-VLKSH--GVTNTYKVRGLDY 154 (794)
Q Consensus 94 l~~~r~LlVlDd~~~~~-------------~~~~l~~~~---~~~~~gs~IlvTtR~~~-v~~~~--~~~~~~~l~~L~~ 154 (794)
...++.+|+||+++... ....+...+ .....+..||.||.... +...+ .....+.+...+.
T Consensus 102 ~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~ 181 (322)
T 1xwi_A 102 RENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEP 181 (322)
T ss_dssp HHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTTSCHHHHHTCCEEEECCCCCH
T ss_pred HhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcccCCHHHHhhcCeEEEeCCcCH
Confidence 23578899999997651 122222211 11123445555665432 11111 2335678888888
Q ss_pred HhHHHHHHhhccCCCCCChhHHHHHHHHHHHhCCC-chHHHHHhh
Q 003802 155 VEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGL-PLAIEVLGS 198 (794)
Q Consensus 155 ~ea~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plai~~~a~ 198 (794)
++..++++..+...... ........|++.+.|. +-.+..+++
T Consensus 182 ~~r~~il~~~l~~~~~~--l~~~~l~~la~~t~G~sgadl~~l~~ 224 (322)
T 1xwi_A 182 HARAAMFKLHLGTTQNS--LTEADFRELGRKTDGYSGADISIIVR 224 (322)
T ss_dssp HHHHHHHHHHHTTCCBC--CCHHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCC--CCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 88889988876322211 1224567788888876 444554443
No 194
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.95 E-value=7.2e-05 Score=77.88 Aligned_cols=158 Identities=12% Similarity=0.097 Sum_probs=83.7
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEEechhhhcccChHHHHHHHHHHHhccccccccchhhhHHHH-HHH
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLI-RWR 93 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l-~~~ 93 (794)
.+.|.|+|++|+|||++|+.+++.....| +.+... ...... .. ........+ ...
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~~~~~~~---~~i~~~-~l~~~~-~g-------------------~~~~~~~~~~~~a 172 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIASQSGATF---FSISAS-SLTSKW-VG-------------------EGEKMVRALFAVA 172 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHHHTTCEE---EEEEGG-GGCCSS-TT-------------------HHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCeE---EEEehH-Hhhccc-cc-------------------hHHHHHHHHHHHH
Confidence 56788999999999999999998754322 333311 110000 00 001111111 112
Q ss_pred hcCCeEEEEEcCCCCh-------------HHHHHHhcCCC----CCCCCCEEEEEeCChh-hhhhc--CcCcEEEcCCCC
Q 003802 94 LCRKRVLVILDDVDQL-------------EQLQALVGNHD----WFGFGSRIIITSRDEH-VLKSH--GVTNTYKVRGLD 153 (794)
Q Consensus 94 l~~~r~LlVlDd~~~~-------------~~~~~l~~~~~----~~~~gs~IlvTtR~~~-v~~~~--~~~~~~~l~~L~ 153 (794)
...++.+|+||+++.. .....++..+. ....+..||.||.... +...+ .....+.+...+
T Consensus 173 ~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~ 252 (357)
T 3d8b_A 173 RCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPE 252 (357)
T ss_dssp HHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCC
T ss_pred HhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHHHHhhCceEEEeCCcC
Confidence 2356789999998543 11223322211 1123445555665432 21111 223467888888
Q ss_pred hHhHHHHHHhhccCCCCCChhHHHHHHHHHHHhCC-CchHHHHHhh
Q 003802 154 YVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGG-LPLAIEVLGS 198 (794)
Q Consensus 154 ~~ea~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Plai~~~a~ 198 (794)
.++..+++...+...... ...+....|++.+.| .+-.+..++.
T Consensus 253 ~~~r~~il~~~~~~~~~~--l~~~~l~~la~~t~G~s~~dl~~l~~ 296 (357)
T 3d8b_A 253 ASARKQIVINLMSKEQCC--LSEEEIEQIVQQSDAFSGADMTQLCR 296 (357)
T ss_dssp HHHHHHHHHHHHHTSCBC--CCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCCC--ccHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 898888887766322111 123456778888888 4455555544
No 195
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.95 E-value=5.7e-05 Score=78.49 Aligned_cols=158 Identities=17% Similarity=0.119 Sum_probs=83.8
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEEechhhhcccChHHHHHHHHHHHhccccccccchhhhHHHHHH-H
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRW-R 93 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~-~ 93 (794)
.+-|.|+|++|+|||++|+.+++.....| +.+. .+ + +..... ...+.....+.. .
T Consensus 84 ~~~iLL~GppGtGKT~la~ala~~~~~~~---~~v~----~~------~----l~~~~~-------g~~~~~~~~~f~~a 139 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVATEANSTF---FSVS----SS------D----LVSKWM-------GESEKLVKQLFAMA 139 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHHHHHTCEE---EEEE----HH------H----HHSCC----------CHHHHHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCCE---EEee----HH------H----Hhhhhc-------chHHHHHHHHHHHH
Confidence 35688999999999999999999764322 2222 11 0 110000 001111222222 2
Q ss_pred hcCCeEEEEEcCCCChH-------------HHHHHhcCC---CCCCCCCEEEEEeCChh-hhhhc--CcCcEEEcCCCCh
Q 003802 94 LCRKRVLVILDDVDQLE-------------QLQALVGNH---DWFGFGSRIIITSRDEH-VLKSH--GVTNTYKVRGLDY 154 (794)
Q Consensus 94 l~~~r~LlVlDd~~~~~-------------~~~~l~~~~---~~~~~gs~IlvTtR~~~-v~~~~--~~~~~~~l~~L~~ 154 (794)
...++.+|+||+++... ....++..+ .....+..||.||.... +...+ .....+.+...+.
T Consensus 140 ~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~ 219 (355)
T 2qp9_X 140 RENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDL 219 (355)
T ss_dssp HHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGGGSCHHHHHTCCEEEECCCCCH
T ss_pred HHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcccCCHHHHcccCEEEEeCCcCH
Confidence 23578899999997542 122222211 11123455665665432 11111 2345778888899
Q ss_pred HhHHHHHHhhccCCCCCChhHHHHHHHHHHHhCC-CchHHHHHhh
Q 003802 155 VEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGG-LPLAIEVLGS 198 (794)
Q Consensus 155 ~ea~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Plai~~~a~ 198 (794)
++..+++...+...... ........|++.+.| .+-.|..++.
T Consensus 220 ~~r~~il~~~l~~~~~~--~~~~~l~~la~~t~G~sg~dl~~l~~ 262 (355)
T 2qp9_X 220 AARTTMFEINVGDTPSV--LTKEDYRTLGAMTEGYSGSDIAVVVK 262 (355)
T ss_dssp HHHHHHHHHHHTTSCBC--CCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCCC--CCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 99999998876332211 112456778888887 4444554443
No 196
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.94 E-value=2.7e-06 Score=77.16 Aligned_cols=66 Identities=18% Similarity=0.346 Sum_probs=33.0
Q ss_pred CCCCCCCEEeccccccccc-ccccccCc----ccccccccccccccc-ccccccCCCCCccEEEecCCCCCC
Q 003802 443 TGVPNLERLNLEGCTRLLE-VHQSVGTL----KRLILLNLKDCRNLV-SFPKNVCLMKSLKILCLCGCLKLE 508 (794)
Q Consensus 443 ~~l~~L~~L~l~~~~~~~~-~~~~~~~l----~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~L~~~~~~~ 508 (794)
.++++|++|+|++|..+++ --..+..+ ++|++|++++|..++ .--..+..+++|++|++++|...+
T Consensus 82 ~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 82 EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVK 153 (176)
T ss_dssp TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTTCC
T ss_pred cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCC
Confidence 3455566666666643322 11223332 356666666665322 222334556666666666665443
No 197
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.90 E-value=3.6e-05 Score=77.71 Aligned_cols=140 Identities=14% Similarity=0.008 Sum_probs=84.4
Q ss_pred hhhhHhHhcCCCCeEEEEEEccCCCcHHHHHHHHHHHh---hccccceEEEEechhhhcccChHHHHHHHHHHHhccccc
Q 003802 2 EKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTL---KDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDL 78 (794)
Q Consensus 2 ~~l~~~l~~~~~~~~vi~i~G~~GvGKTtLa~~v~~~~---~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 78 (794)
+.+.+.+..+. .+...++|+.|+|||++|+.+++.. +.......++... .....+ +..+++........
T Consensus 7 ~~L~~~i~~~~--~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~---~~~~~i-d~ir~li~~~~~~p-- 78 (305)
T 2gno_A 7 ETLKRIIEKSE--GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPE---GENIGI-DDIRTIKDFLNYSP-- 78 (305)
T ss_dssp HHHHHHHHTCS--SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCS---SSCBCH-HHHHHHHHHHTSCC--
T ss_pred HHHHHHHHCCC--CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCC---cCCCCH-HHHHHHHHHHhhcc--
Confidence 34555666554 6789999999999999999998852 1223344444311 001121 12233333311100
Q ss_pred cccchhhhHHHHHHHhcCCeEEEEEcCCCChH--HHHHHhcCCCCCCCCCEEEEEeCCh-hhhhhcCcCcEEEcCCCChH
Q 003802 79 IIWDVHKGINLIRWRLCRKRVLVILDDVDQLE--QLQALVGNHDWFGFGSRIIITSRDE-HVLKSHGVTNTYKVRGLDYV 155 (794)
Q Consensus 79 ~~~~~~~~~~~l~~~l~~~r~LlVlDd~~~~~--~~~~l~~~~~~~~~gs~IlvTtR~~-~v~~~~~~~~~~~l~~L~~~ 155 (794)
..+++-++|+|+++... ..++++..+....+.+.+|++|... .+....... .+++.+++++
T Consensus 79 ---------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f~~l~~~ 142 (305)
T 2gno_A 79 ---------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRVVVNVPK 142 (305)
T ss_dssp ---------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEEECCCCH
T ss_pred ---------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeCCCCCHH
Confidence 12467789999997653 3555555443334567777666443 444434344 8999999999
Q ss_pred hHHHHHHhhc
Q 003802 156 EALQLFHLKV 165 (794)
Q Consensus 156 ea~~lf~~~~ 165 (794)
+..+.+.+..
T Consensus 143 ~i~~~L~~~~ 152 (305)
T 2gno_A 143 EFRDLVKEKI 152 (305)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998775
No 198
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.84 E-value=0.00023 Score=72.14 Aligned_cols=129 Identities=14% Similarity=0.128 Sum_probs=72.0
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEEechhhhcccChHHHHHHHHHHHhccccccccchhhhHHHHHHH
Q 003802 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWR 93 (794)
Q Consensus 14 ~~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~ 93 (794)
..+.|.|+|++|+|||++|+.+++.....| +.+. ..++.... .+.. .......+...
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~ala~~~~~~~---i~v~----------~~~l~~~~----~g~~------~~~~~~~f~~a 104 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAKAIANECQANF---ISIK----------GPELLTMW----FGES------EANVREIFDKA 104 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHHHHHHHTTCEE---EEEC----------HHHHHHHH----HTTC------TTHHHHHHHHH
T ss_pred CCceEEEECCCCcCHHHHHHHHHHHhCCCE---EEEE----------hHHHHhhh----cCch------HHHHHHHHHHH
Confidence 356788999999999999999999764322 2222 11111111 1111 11122223333
Q ss_pred hcCCeEEEEEcCCCChHH----------------HHHHhcCCC--CCCCCCEEEEEeCChhhh-hh-c---CcCcEEEcC
Q 003802 94 LCRKRVLVILDDVDQLEQ----------------LQALVGNHD--WFGFGSRIIITSRDEHVL-KS-H---GVTNTYKVR 150 (794)
Q Consensus 94 l~~~r~LlVlDd~~~~~~----------------~~~l~~~~~--~~~~gs~IlvTtR~~~v~-~~-~---~~~~~~~l~ 150 (794)
....+.++++|+++.... ...++..+. ....+..||.||...... .. . .....+.+.
T Consensus 105 ~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~ 184 (301)
T 3cf0_A 105 RQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIP 184 (301)
T ss_dssp HHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECC
T ss_pred HhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCccccChHHhcCCccceEEecC
Confidence 345789999999975321 122222111 112345666677654321 11 1 123478888
Q ss_pred CCChHhHHHHHHhhc
Q 003802 151 GLDYVEALQLFHLKV 165 (794)
Q Consensus 151 ~L~~~ea~~lf~~~~ 165 (794)
..+.++-.++++...
T Consensus 185 ~p~~~~r~~il~~~l 199 (301)
T 3cf0_A 185 LPDEKSRVAILKANL 199 (301)
T ss_dssp CCCHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHH
Confidence 889998888887765
No 199
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.83 E-value=4.8e-05 Score=78.36 Aligned_cols=164 Identities=15% Similarity=0.139 Sum_probs=88.1
Q ss_pred hhhHhHhcCCCCeEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEEechhhhcccChHHHHHHHHHHHhccccccccc
Q 003802 3 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWD 82 (794)
Q Consensus 3 ~l~~~l~~~~~~~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 82 (794)
.+.+++..+. ..+++.+.|++|+|||++|+.+++.... ..+.+. .+. .. .+..++.+.......
T Consensus 37 ~l~~~l~~~~-~~~~~L~~G~~G~GKT~la~~la~~l~~---~~~~i~----~~~-~~-~~~i~~~~~~~~~~~------ 100 (324)
T 3u61_B 37 TFKSITSKGK-IPHIILHSPSPGTGKTTVAKALCHDVNA---DMMFVN----GSD-CK-IDFVRGPLTNFASAA------ 100 (324)
T ss_dssp HHHHHHHTTC-CCSEEEECSSTTSSHHHHHHHHHHHTTE---EEEEEE----TTT-CC-HHHHHTHHHHHHHBC------
T ss_pred HHHHHHHcCC-CCeEEEeeCcCCCCHHHHHHHHHHHhCC---CEEEEc----ccc-cC-HHHHHHHHHHHHhhc------
Confidence 4555665432 3467888899999999999999987642 223333 111 11 222222222211100
Q ss_pred hhhhHHHHHHHhcCCeEEEEEcCCCChH---HHHHHhcCCCCCCCCCEEEEEeCChh-hhhh-cCcCcEEEcCCCChHhH
Q 003802 83 VHKGINLIRWRLCRKRVLVILDDVDQLE---QLQALVGNHDWFGFGSRIIITSRDEH-VLKS-HGVTNTYKVRGLDYVEA 157 (794)
Q Consensus 83 ~~~~~~~l~~~l~~~r~LlVlDd~~~~~---~~~~l~~~~~~~~~gs~IlvTtR~~~-v~~~-~~~~~~~~l~~L~~~ea 157 (794)
...+++.++|+|+++... ..+.+...+.....+.++|+||.... +... ......+++.+.+.++.
T Consensus 101 ----------~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~~~i~~~~~~~~e~ 170 (324)
T 3u61_B 101 ----------SFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRCRVITFGQPTDEDK 170 (324)
T ss_dssp ----------CCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHSEEEECCCCCHHHH
T ss_pred ----------ccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhCcEEEeCCCCHHHH
Confidence 012478899999998765 34444433222234567888877643 1111 11224789999998885
Q ss_pred HHHHHh-------hccC-CCCCChhHHHHHHHHHHHhCCCchHHH
Q 003802 158 LQLFHL-------KVSN-GKQPTDYRVELSKYVVNYAGGLPLAIE 194 (794)
Q Consensus 158 ~~lf~~-------~~~~-~~~~~~~~~~~~~~i~~~~~g~Plai~ 194 (794)
.+++.. .+.. +....+ .+....+++.++|.+..+.
T Consensus 171 ~~il~~~~~~l~~~~~~~~~~~~~--~~~~~~l~~~~~gd~R~a~ 213 (324)
T 3u61_B 171 IEMMKQMIRRLTEICKHEGIAIAD--MKVVAALVKKNFPDFRKTI 213 (324)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCBSC--HHHHHHHHHHTCSCTTHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCc--HHHHHHHHHhCCCCHHHHH
Confidence 443322 2211 111111 2556778888888776443
No 200
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.82 E-value=0.00029 Score=75.57 Aligned_cols=159 Identities=17% Similarity=0.164 Sum_probs=85.5
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEEechhhhcccChHHHHHHHHHHHhccccccccchhhhHHHHHH-H
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRW-R 93 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~-~ 93 (794)
.+-|.|+|++|+|||++|+.+++.... .-++. ++.. .+ ..... +. .+.....+.+ .
T Consensus 167 ~~~vLL~GppGtGKT~lA~aia~~~~~----~~~~~----v~~~-~l---~~~~~----g~-------~~~~~~~~f~~a 223 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAKAVATEANN----STFFS----ISSS-DL---VSKWL----GE-------SEKLVKNLFQLA 223 (444)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHCCS----SEEEE----ECCC------------------------CCCTHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcCC----CCEEE----EeHH-HH---Hhhhc----ch-------HHHHHHHHHHHH
Confidence 467889999999999999999997621 12222 1111 11 11111 00 0111222222 2
Q ss_pred hcCCeEEEEEcCCCCh-------------HHHHHHhcCCCC---CCCCCEEEEEeCChhhh-hh-c-CcCcEEEcCCCCh
Q 003802 94 LCRKRVLVILDDVDQL-------------EQLQALVGNHDW---FGFGSRIIITSRDEHVL-KS-H-GVTNTYKVRGLDY 154 (794)
Q Consensus 94 l~~~r~LlVlDd~~~~-------------~~~~~l~~~~~~---~~~gs~IlvTtR~~~v~-~~-~-~~~~~~~l~~L~~ 154 (794)
-..++.+|+||+++.. .....++..+.. ...+..||.||...... .. . .....+.+...+.
T Consensus 224 ~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~ 303 (444)
T 2zan_A 224 RENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEA 303 (444)
T ss_dssp HHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCH
T ss_pred HHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCccccCHHHHhhcceEEEeCCcCH
Confidence 2357889999999755 124455544432 13455666677653221 11 1 2234677888888
Q ss_pred HhHHHHHHhhccCCCCCChhHHHHHHHHHHHhCCC-chHHHHHhh
Q 003802 155 VEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGL-PLAIEVLGS 198 (794)
Q Consensus 155 ~ea~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plai~~~a~ 198 (794)
++...++...+...... ........|++.+.|. +-.|..++.
T Consensus 304 ~~r~~il~~~l~~~~~~--l~~~~l~~la~~t~G~sgadl~~l~~ 346 (444)
T 2zan_A 304 HARAAMFRLHLGSTQNS--LTEADFQELGRKTDGYSGADISIIVR 346 (444)
T ss_dssp HHHHHHHHHHHTTSCEE--CCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCC--CCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 88888888776322211 1224567788888884 444544433
No 201
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.82 E-value=0.00016 Score=76.45 Aligned_cols=157 Identities=13% Similarity=0.078 Sum_probs=81.1
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEEechhhhcccChHHHHHHHHHHHhccccccccchhhhHHHHH-HH
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIR-WR 93 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~-~~ 93 (794)
.+-|.|+|+.|+|||++|+.+++.....| +.+.+. .+.. .... ..+.....+. ..
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~~~~~~---~~v~~~-------~l~~---~~~g-----------~~~~~~~~~~~~a 203 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAESNATF---FNISAA-------SLTS---KYVG-----------EGEKLVRALFAVA 203 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHHTTCEE---EEECSC-------CC---------------------CHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhcCcE---EEeeHH-------Hhhc---cccc-----------hHHHHHHHHHHHH
Confidence 46788999999999999999988754322 222210 1100 0000 0001111121 12
Q ss_pred hcCCeEEEEEcCCCCh-----------H--HHHHHhcCC----CCCCCCCEEEEEeCChh-hhhh-c-CcCcEEEcCCCC
Q 003802 94 LCRKRVLVILDDVDQL-----------E--QLQALVGNH----DWFGFGSRIIITSRDEH-VLKS-H-GVTNTYKVRGLD 153 (794)
Q Consensus 94 l~~~r~LlVlDd~~~~-----------~--~~~~l~~~~----~~~~~gs~IlvTtR~~~-v~~~-~-~~~~~~~l~~L~ 153 (794)
...++.+|+||+++.. . ....+...+ ........||.||.... +... . .....+.+...+
T Consensus 204 ~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~ 283 (389)
T 3vfd_A 204 RELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPN 283 (389)
T ss_dssp HHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGGGCCHHHHTTCCEEEECCCCC
T ss_pred HhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCCchhcCHHHHcCcceEEEcCCcC
Confidence 2345679999999654 0 112222111 10122345555665432 1111 1 123468888899
Q ss_pred hHhHHHHHHhhccCCCCCChhHHHHHHHHHHHhCCCch-HHHHHh
Q 003802 154 YVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPL-AIEVLG 197 (794)
Q Consensus 154 ~~ea~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-ai~~~a 197 (794)
.++..+++...+..... ....+....|++.+.|..- ++..+.
T Consensus 284 ~~~r~~il~~~~~~~~~--~l~~~~~~~la~~~~g~~~~~l~~L~ 326 (389)
T 3vfd_A 284 EETRLLLLKNLLCKQGS--PLTQKELAQLARMTDGYSGSDLTALA 326 (389)
T ss_dssp HHHHHHHHHHHHTTSCC--CSCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 99999999877633221 1223456788888888554 444443
No 202
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.79 E-value=0.00013 Score=75.60 Aligned_cols=167 Identities=15% Similarity=0.202 Sum_probs=89.2
Q ss_pred hhHhHhcCCCCeEEEEEEccCCCcHHHHHHHHHHHhhcc-ccc-eEEEEechhhhcccChHHHHHHHHHHHhcccccccc
Q 003802 4 MNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ-FEA-SSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIW 81 (794)
Q Consensus 4 l~~~l~~~~~~~~vi~i~G~~GvGKTtLa~~v~~~~~~~-f~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 81 (794)
+...+..+ +.+.+.++|+.|+||||+|+.++..+... +.. +..+. .+...... ..++.+..+.....
T Consensus 37 L~~~i~~g--~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~----~~~~~~~~-~ir~~i~~~~~~~~---- 105 (340)
T 1sxj_C 37 VRKFVDEG--KLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELN----ASDDRGID-VVRNQIKDFASTRQ---- 105 (340)
T ss_dssp HHHHHHTT--CCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEEC----TTSCCSHH-HHHTHHHHHHHBCC----
T ss_pred HHHHHhcC--CCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEc----CcccccHH-HHHHHHHHHHhhcc----
Confidence 44444443 22338899999999999999999965322 211 11121 11111111 11112211110000
Q ss_pred chhhhHHHHHHHhcCCeEEEEEcCCCCh--HHHHHHhcCCCCCCCCCEEEEEeCChh-hhh-hcCcCcEEEcCCCChHhH
Q 003802 82 DVHKGINLIRWRLCRKRVLVILDDVDQL--EQLQALVGNHDWFGFGSRIIITSRDEH-VLK-SHGVTNTYKVRGLDYVEA 157 (794)
Q Consensus 82 ~~~~~~~~l~~~l~~~r~LlVlDd~~~~--~~~~~l~~~~~~~~~gs~IlvTtR~~~-v~~-~~~~~~~~~l~~L~~~ea 157 (794)
...+.+-++|+|+++.. ...+.+...+......++++++|.... +.. .......+++.++++++.
T Consensus 106 -----------~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~~~~~~~l~~~~~ 174 (340)
T 1sxj_C 106 -----------IFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRFRFQPLPQEAI 174 (340)
T ss_dssp -----------SSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHH
T ss_pred -----------cCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhceeEeccCCCHHHH
Confidence 01234678999998654 233333332222234566776665432 211 122234789999999999
Q ss_pred HHHHHhhccCCCCCChhHHHHHHHHHHHhCCCchHHH
Q 003802 158 LQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIE 194 (794)
Q Consensus 158 ~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~ 194 (794)
.+.+...+..... ....+..+.+++.++|.+.-+.
T Consensus 175 ~~~l~~~~~~~~~--~i~~~~~~~i~~~s~G~~r~~~ 209 (340)
T 1sxj_C 175 ERRIANVLVHEKL--KLSPNAEKALIELSNGDMRRVL 209 (340)
T ss_dssp HHHHHHHHHTTTC--CBCHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHH
Confidence 9888876522111 1223567788999999886543
No 203
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.75 E-value=1.7e-05 Score=77.78 Aligned_cols=88 Identities=20% Similarity=0.252 Sum_probs=64.9
Q ss_pred CCCCCCEEecCCCCCccC--CCCccccCCCCCCeEeCCCCCCccCchhhhccC--CCCEEecCCCcCCCCCCCCCccccc
Q 003802 586 GLSSLQTLDLSDCNLLEG--AIPSDIGSLFSLEAIDLSGNNFFSLPSSINQLL--KLKILCLEKCRNLKSLPELPPEIVF 661 (794)
Q Consensus 586 ~~~~L~~L~l~~n~~~~~--~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~--~L~~L~L~~n~~~~~~~~~~~~L~~ 661 (794)
++++|+.|+|++|. +++ .++..+..+++|+.|+|++|+|+.+. .+..+. +|++|+|++|++...+|..+ ..+.
T Consensus 168 ~l~~L~~L~Ls~N~-l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~-~y~~ 244 (267)
T 3rw6_A 168 NIPELLSLNLSNNR-LYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQS-TYIS 244 (267)
T ss_dssp HCTTCCEEECTTSC-CCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHH-HHHH
T ss_pred hCCCCCEEECCCCC-CCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCccccCcch-hHHH
Confidence 57799999999999 444 34566778999999999999999774 455555 99999999999776655321 1111
Q ss_pred ccccccccccccccc
Q 003802 662 VGAEDCTSLETISAF 676 (794)
Q Consensus 662 L~l~~~~~L~~l~~~ 676 (794)
-.+..+|+|+.|+..
T Consensus 245 ~il~~~P~L~~LDg~ 259 (267)
T 3rw6_A 245 AIRERFPKLLRLDGH 259 (267)
T ss_dssp HHHHHCTTCCEESSC
T ss_pred HHHHHCcccCeECCc
Confidence 234667888887653
No 204
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.71 E-value=6.5e-05 Score=69.75 Aligned_cols=26 Identities=27% Similarity=0.358 Sum_probs=23.4
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhh
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNTLK 40 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~~~ 40 (794)
.+.+.|+|+.|+||||||+.++....
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999999764
No 205
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.64 E-value=2.3e-05 Score=76.86 Aligned_cols=13 Identities=38% Similarity=0.460 Sum_probs=5.6
Q ss_pred CCcEEEccCccCc
Q 003802 519 CLEELDVGGTAIR 531 (794)
Q Consensus 519 ~L~~L~l~~~~l~ 531 (794)
+|++|++++|.+.
T Consensus 221 ~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 221 KLEELWLDGNSLC 233 (267)
T ss_dssp CCSEEECTTSTTG
T ss_pred CcceEEccCCcCc
Confidence 4444444444443
No 206
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.60 E-value=2.5e-05 Score=69.50 Aligned_cols=24 Identities=25% Similarity=0.192 Sum_probs=20.9
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHh
Q 003802 16 RFIGICGMGGIGKTTLAKVLYNTL 39 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~~~ 39 (794)
.-|.|+|+.|+|||++|+.+++..
T Consensus 25 ~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 25 IAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp SCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCEEEECCCCCCHHHHHHHHHHhC
Confidence 346799999999999999999853
No 207
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.60 E-value=0.00013 Score=68.00 Aligned_cols=27 Identities=22% Similarity=0.202 Sum_probs=23.1
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhhc
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNTLKD 41 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~~~~ 41 (794)
.+.+.|+|++|+|||++|+.+++....
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 456789999999999999999987643
No 208
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.59 E-value=0.00089 Score=67.78 Aligned_cols=157 Identities=15% Similarity=0.108 Sum_probs=80.9
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEEechhhhcccChHHHHHHHHHHHhccccccccchhhhHHH-HHHH
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINL-IRWR 93 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-l~~~ 93 (794)
.+.|.|+|++|+|||++|+.++......| +.+.......... .+....... +...
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~~~~~~---~~i~~~~l~~~~~---------------------~~~~~~~~~~~~~~ 109 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATECSATF---LNISAASLTSKYV---------------------GDGEKLVRALFAVA 109 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHTTCEE---EEEESTTTSSSSC---------------------SCHHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHhCCCe---EEeeHHHHhhccc---------------------chHHHHHHHHHHHH
Confidence 46788999999999999999998764322 2232111000000 001111111 1222
Q ss_pred hcCCeEEEEEcCCCChH-------------HHHHHh---cCCCCC--CCCCEEEEEeCChh-hhhhc--CcCcEEEcCCC
Q 003802 94 LCRKRVLVILDDVDQLE-------------QLQALV---GNHDWF--GFGSRIIITSRDEH-VLKSH--GVTNTYKVRGL 152 (794)
Q Consensus 94 l~~~r~LlVlDd~~~~~-------------~~~~l~---~~~~~~--~~gs~IlvTtR~~~-v~~~~--~~~~~~~l~~L 152 (794)
...++.+|++|+++... ....+. ...+.. ..+..||.||.... +.... .....+.+...
T Consensus 110 ~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p 189 (297)
T 3b9p_A 110 RHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLP 189 (297)
T ss_dssp HHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHHHHHCCEEEECCCC
T ss_pred HHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHHHhhCCeEEEeCCc
Confidence 23567899999985431 111121 111111 12445666666532 11111 12346777777
Q ss_pred ChHhHHHHHHhhccCCCCCChhHHHHHHHHHHHhCCCch-HHHHHh
Q 003802 153 DYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPL-AIEVLG 197 (794)
Q Consensus 153 ~~~ea~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-ai~~~a 197 (794)
+.++...++...+...... ...+....+++.+.|.+- ++..++
T Consensus 190 ~~~~r~~il~~~~~~~~~~--~~~~~~~~la~~~~g~~~~~l~~l~ 233 (297)
T 3b9p_A 190 DEQTRELLLNRLLQKQGSP--LDTEALRRLAKITDGYSGSDLTALA 233 (297)
T ss_dssp CHHHHHHHHHHHHGGGSCC--SCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 8888888887765222111 122456778888888775 454443
No 209
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.56 E-value=0.0001 Score=69.85 Aligned_cols=35 Identities=26% Similarity=0.260 Sum_probs=29.0
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhhccccceEEEE
Q 003802 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~ 50 (794)
+.|.|+|++|+|||+||+.+++........++|+.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~ 89 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVY 89 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 67889999999999999999997765555566665
No 210
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.50 E-value=0.00046 Score=74.44 Aligned_cols=150 Identities=16% Similarity=0.125 Sum_probs=78.1
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEEechhhhcccChHHHHHHHHHHHhccccccccchhhhHHHHHHH
Q 003802 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWR 93 (794)
Q Consensus 14 ~~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~ 93 (794)
..+-|.|+|++|+|||++|+.+++.....| +.+.+. ... ..+.+ .........+...
T Consensus 237 ~~~~vLL~GppGtGKT~lAraia~~~~~~f---v~vn~~-~l~-------------~~~~g------~~~~~~~~~f~~A 293 (489)
T 3hu3_A 237 PPRGILLYGPPGTGKTLIARAVANETGAFF---FLINGP-EIM-------------SKLAG------ESESNLRKAFEEA 293 (489)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHCSSEE---EEEEHH-HHH-------------TSCTT------HHHHHHHHHHHHH
T ss_pred CCCcEEEECcCCCCHHHHHHHHHHHhCCCE---EEEEch-Hhh-------------hhhcc------hhHHHHHHHHHHH
Confidence 345688999999999999999988753322 333311 111 00000 0011112223333
Q ss_pred hcCCeEEEEEcCCCCh-------------HHHHHHhcCCC--CCCCCCEEEEEeCChh-hhhhc----CcCcEEEcCCCC
Q 003802 94 LCRKRVLVILDDVDQL-------------EQLQALVGNHD--WFGFGSRIIITSRDEH-VLKSH----GVTNTYKVRGLD 153 (794)
Q Consensus 94 l~~~r~LlVlDd~~~~-------------~~~~~l~~~~~--~~~~gs~IlvTtR~~~-v~~~~----~~~~~~~l~~L~ 153 (794)
..+++.+|+||+++.. .....++..+. ....+..||.||.... +...+ .....+.+...+
T Consensus 294 ~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~ 373 (489)
T 3hu3_A 294 EKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPD 373 (489)
T ss_dssp HHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCC
T ss_pred HhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCccccCHHHhCCCcCceEEEeCCCC
Confidence 4467889999998321 11222222111 1123445666666542 22221 223468899999
Q ss_pred hHhHHHHHHhhccCCCCCChhHHHHHHHHHHHhCCC
Q 003802 154 YVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGL 189 (794)
Q Consensus 154 ~~ea~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 189 (794)
.++-.+++..++........ ....++++.+.|.
T Consensus 374 ~~eR~~IL~~~~~~~~l~~~---~~l~~la~~t~g~ 406 (489)
T 3hu3_A 374 ATGRLEILQIHTKNMKLADD---VDLEQVANETHGH 406 (489)
T ss_dssp HHHHHHHHHHHTTTSCBCTT---CCHHHHHHTCTTC
T ss_pred HHHHHHHHHHHHhcCCCcch---hhHHHHHHHccCC
Confidence 99999999887632211111 1134566666664
No 211
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.44 E-value=7.6e-05 Score=66.49 Aligned_cols=36 Identities=19% Similarity=0.325 Sum_probs=27.2
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEE
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~ 50 (794)
-..++|+|+.|+|||||++.++......-..++++.
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~ 71 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYID 71 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEc
Confidence 357899999999999999999996644211256665
No 212
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.38 E-value=0.0026 Score=65.75 Aligned_cols=150 Identities=12% Similarity=0.136 Sum_probs=80.0
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEEechhhhcccChHHHHHHHHHHHhccccccccchhhhHHHHHH-
Q 003802 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRW- 92 (794)
Q Consensus 14 ~~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~- 92 (794)
..+=|.++|++|+|||.+|+++++.....| +.+....-.+.... +.+..++.+.+
T Consensus 181 ~prGvLL~GPPGTGKTllAkAiA~e~~~~f---~~v~~s~l~sk~vG---------------------ese~~vr~lF~~ 236 (405)
T 4b4t_J 181 QPKGVILYGPPGTGKTLLARAVAHHTDCKF---IRVSGAELVQKYIG---------------------EGSRMVRELFVM 236 (405)
T ss_dssp CCCCEEEESCSSSSHHHHHHHHHHHHTCEE---EEEEGGGGSCSSTT---------------------HHHHHHHHHHHH
T ss_pred CCCceEEeCCCCCCHHHHHHHHHHhhCCCc---eEEEhHHhhccccc---------------------hHHHHHHHHHHH
Confidence 356788999999999999999999876543 23331111111000 01111112222
Q ss_pred HhcCCeEEEEEcCCCChH----------------HHHHHhcCCC--CCCCCCEEEEEeCChhh-hhh----cCcCcEEEc
Q 003802 93 RLCRKRVLVILDDVDQLE----------------QLQALVGNHD--WFGFGSRIIITSRDEHV-LKS----HGVTNTYKV 149 (794)
Q Consensus 93 ~l~~~r~LlVlDd~~~~~----------------~~~~l~~~~~--~~~~gs~IlvTtR~~~v-~~~----~~~~~~~~l 149 (794)
.-+..+++|++|+++..- ....++..+. ....+..||.||..... -.. ..-+..+.+
T Consensus 237 Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i 316 (405)
T 4b4t_J 237 AREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEF 316 (405)
T ss_dssp HHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEEC
T ss_pred HHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhhCCHhHcCCCcCceEEEc
Confidence 223578999999985431 1222322211 11234455666654322 111 134568888
Q ss_pred CCCChHhHHHHHHhhccCCCCCChhHHHHHHHHHHHhCCCc
Q 003802 150 RGLDYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLP 190 (794)
Q Consensus 150 ~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 190 (794)
+.-+.++-.++|+.+..+-..... ....++++.+.|.-
T Consensus 317 ~lPd~~~R~~Il~~~~~~~~l~~d---vdl~~lA~~t~G~S 354 (405)
T 4b4t_J 317 PPPSVAARAEILRIHSRKMNLTRG---INLRKVAEKMNGCS 354 (405)
T ss_dssp CCCCHHHHHHHHHHHHTTSBCCSS---CCHHHHHHHCCSCC
T ss_pred CCcCHHHHHHHHHHHhcCCCCCcc---CCHHHHHHHCCCCC
Confidence 888888888888766522211111 01456777777754
No 213
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.30 E-value=0.002 Score=69.35 Aligned_cols=95 Identities=12% Similarity=-0.018 Sum_probs=55.7
Q ss_pred EEEEEcCCCCh--HHHHHHhcCCCCCCCCCEEEEEe----------C----Chhhh-hhcCcCcEEEcCCCChHhHHHHH
Q 003802 99 VLVILDDVDQL--EQLQALVGNHDWFGFGSRIIITS----------R----DEHVL-KSHGVTNTYKVRGLDYVEALQLF 161 (794)
Q Consensus 99 ~LlVlDd~~~~--~~~~~l~~~~~~~~~gs~IlvTt----------R----~~~v~-~~~~~~~~~~l~~L~~~ea~~lf 161 (794)
-++|+|+++.. +..+.+...+...... .+|+.| . ...+. ........+.+.+++.++..+++
T Consensus 297 ~VliIDEa~~l~~~a~~aLlk~lEe~~~~-~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~~~~~~~~~~~e~~~iL 375 (456)
T 2c9o_A 297 GVLFVDEVHMLDIECFTYLHRALESSIAP-IVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQII 375 (456)
T ss_dssp CEEEEESGGGCBHHHHHHHHHHTTSTTCC-EEEEEECCSEEECBTTSSCEEETTCCHHHHTTEEEEECCCCCHHHHHHHH
T ss_pred eEEEEechhhcCHHHHHHHHHHhhccCCC-EEEEecCCccccccccccccccccCChhHHhhcceeeCCCCCHHHHHHHH
Confidence 38999999765 4466666655433333 344344 2 11111 11222335799999999999999
Q ss_pred HhhccCCCCCChhHHHHHHHHHHHh-CCCchHHHHH
Q 003802 162 HLKVSNGKQPTDYRVELSKYVVNYA-GGLPLAIEVL 196 (794)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~i~~~~-~g~Plai~~~ 196 (794)
..++.... .....+....|++.+ +|.|..+..+
T Consensus 376 ~~~~~~~~--~~~~~~~~~~i~~~a~~g~~r~a~~l 409 (456)
T 2c9o_A 376 KIRAQTEG--INISEEALNHLGEIGTKTTLRYSVQL 409 (456)
T ss_dssp HHHHHHHT--CCBCHHHHHHHHHHHHHSCHHHHHHT
T ss_pred HHHHHHhC--CCCCHHHHHHHHHHccCCCHHHHHHH
Confidence 87752111 112235567788887 7888755544
No 214
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.27 E-value=0.00086 Score=68.99 Aligned_cols=49 Identities=10% Similarity=0.038 Sum_probs=35.9
Q ss_pred EEEcCCCChHhHHHHHHhhccCCCCCChhHHHHHHHHHHHhCCCchHHHHH
Q 003802 146 TYKVRGLDYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIEVL 196 (794)
Q Consensus 146 ~~~l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 196 (794)
...+++.+.++..+++++.+.... .....+.+..|+++++|.|..+..+
T Consensus 174 ~~~Ld~~~~~~l~~iL~~~~~~~~--~~~~~~~~~~ia~~~~G~~R~a~~l 222 (334)
T 1in4_A 174 ILELDFYTVKELKEIIKRAASLMD--VEIEDAAAEMIAKRSRGTPRIAIRL 222 (334)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHTT--CCBCHHHHHHHHHTSTTCHHHHHHH
T ss_pred eeeCCCCCHHHHHHHHHHHHHHcC--CCcCHHHHHHHHHhcCCChHHHHHH
Confidence 578999999999999988762211 1223466889999999999765443
No 215
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.27 E-value=0.003 Score=63.51 Aligned_cols=28 Identities=21% Similarity=0.351 Sum_probs=24.4
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHHHhhc
Q 003802 14 DVRFIGICGMGGIGKTTLAKVLYNTLKD 41 (794)
Q Consensus 14 ~~~vi~i~G~~GvGKTtLa~~v~~~~~~ 41 (794)
.++.+.++|++|+|||+||+.+++....
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l~~ 62 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKMGI 62 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4568889999999999999999998743
No 216
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.25 E-value=0.00058 Score=67.81 Aligned_cols=35 Identities=23% Similarity=0.089 Sum_probs=25.3
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhhccccceEEEE
Q 003802 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~ 50 (794)
..|.|+|+.|+|||++|+.+++.....-...+.++
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~ 64 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHYLSSRWQGPFISLN 64 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEE
T ss_pred CCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEe
Confidence 46779999999999999999986432212234454
No 217
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.19 E-value=0.0061 Score=63.86 Aligned_cols=151 Identities=13% Similarity=0.129 Sum_probs=78.6
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEEechhhhcccChHHHHHHHHHHHhccccccccchhhhHHHH-H
Q 003802 13 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLI-R 91 (794)
Q Consensus 13 ~~~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l-~ 91 (794)
...+=|.++|++|+|||.+|+++++.....| +.+....-++.... +.+..++.+ .
T Consensus 241 ~pprGILLyGPPGTGKTlLAkAiA~e~~~~f---i~vs~s~L~sk~vG---------------------esek~ir~lF~ 296 (467)
T 4b4t_H 241 DPPKGILLYGPPGTGKTLCARAVANRTDATF---IRVIGSELVQKYVG---------------------EGARMVRELFE 296 (467)
T ss_dssp CCCSEEEECSCTTSSHHHHHHHHHHHHTCEE---EEEEGGGGCCCSSS---------------------HHHHHHHHHHH
T ss_pred CCCCceEeeCCCCCcHHHHHHHHHhccCCCe---EEEEhHHhhcccCC---------------------HHHHHHHHHHH
Confidence 3467788999999999999999999876543 23321111111000 011111112 2
Q ss_pred HHhcCCeEEEEEcCCCChH----------------HHHHHhcCCC--CCCCCCEEEEEeCChhh-hhhc----CcCcEEE
Q 003802 92 WRLCRKRVLVILDDVDQLE----------------QLQALVGNHD--WFGFGSRIIITSRDEHV-LKSH----GVTNTYK 148 (794)
Q Consensus 92 ~~l~~~r~LlVlDd~~~~~----------------~~~~l~~~~~--~~~~gs~IlvTtR~~~v-~~~~----~~~~~~~ 148 (794)
..-...+++|++|+++..- ....++..+. ....+..||.||..... -..+ .-...+.
T Consensus 297 ~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~ 376 (467)
T 4b4t_H 297 MARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVE 376 (467)
T ss_dssp HHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTSBCHHHHSTTTCCEEEC
T ss_pred HHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcccCChhhhccccccEEEE
Confidence 2223578999999985431 1122222111 11233445556654322 1111 2355788
Q ss_pred cCCCChHhHHHHHHhhccCCCCCChhHHHHHHHHHHHhCCCc
Q 003802 149 VRGLDYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLP 190 (794)
Q Consensus 149 l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 190 (794)
+..-+.++-.++|+.+...-..... -....|++.+.|.-
T Consensus 377 i~lPd~~~R~~Ilk~~l~~~~l~~d---vdl~~LA~~T~GfS 415 (467)
T 4b4t_H 377 FSLPDLEGRANIFRIHSKSMSVERG---IRWELISRLCPNST 415 (467)
T ss_dssp CCCCCHHHHHHHHHHHHTTSCBCSS---CCHHHHHHHCCSCC
T ss_pred eCCcCHHHHHHHHHHHhcCCCCCCC---CCHHHHHHHCCCCC
Confidence 8887888888888766522111111 01355777777753
No 218
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.18 E-value=0.0045 Score=65.07 Aligned_cols=151 Identities=19% Similarity=0.223 Sum_probs=78.9
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEEechhhhcccChHHHHHHHHHHHhccccccccchhhhHHHHHH
Q 003802 13 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRW 92 (794)
Q Consensus 13 ~~~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~ 92 (794)
...+=|.++|++|+|||.+|+++++.....| +.+....-++.... +.+.....+..
T Consensus 213 ~~prGvLL~GPPGtGKTllAkAiA~e~~~~~---~~v~~s~l~sk~~G---------------------ese~~ir~~F~ 268 (437)
T 4b4t_L 213 KPPKGVLLYGPPGTGKTLLAKAVAATIGANF---IFSPASGIVDKYIG---------------------ESARIIREMFA 268 (437)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHHTCEE---EEEEGGGTCCSSSS---------------------HHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhCCCE---EEEehhhhccccch---------------------HHHHHHHHHHH
Confidence 3457788999999999999999999876443 23321111110000 01111112222
Q ss_pred -HhcCCeEEEEEcCCCChH----------------HHHHHhcCCC--CCCCCCEEEEEeCChhhh-hhc-C---cCcEEE
Q 003802 93 -RLCRKRVLVILDDVDQLE----------------QLQALVGNHD--WFGFGSRIIITSRDEHVL-KSH-G---VTNTYK 148 (794)
Q Consensus 93 -~l~~~r~LlVlDd~~~~~----------------~~~~l~~~~~--~~~~gs~IlvTtR~~~v~-~~~-~---~~~~~~ 148 (794)
.-...+++|++|+++..- .+..++..+. ....+..||.||...... ..+ . -+..+.
T Consensus 269 ~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~ 348 (437)
T 4b4t_L 269 YAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVE 348 (437)
T ss_dssp HHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSSCTTTTSTTSEEEEEC
T ss_pred HHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchhhCHHHhCCCccceeee
Confidence 223578999999985320 1223332221 123355677677654322 111 1 244677
Q ss_pred cCCCChHhHHHHHHhhccCCCCCChhHHHHHHHHHHHhCCCc
Q 003802 149 VRGLDYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLP 190 (794)
Q Consensus 149 l~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 190 (794)
++.-+.++-.++|+.+...-...... ....+++.+.|.-
T Consensus 349 i~lPd~~~R~~Il~~~~~~~~~~~d~---dl~~lA~~t~G~s 387 (437)
T 4b4t_L 349 IPLPNEAGRLEIFKIHTAKVKKTGEF---DFEAAVKMSDGFN 387 (437)
T ss_dssp CCCCCHHHHHHHHHHHHHTSCBCSCC---CHHHHHHTCCSCC
T ss_pred cCCcCHHHHHHHHHHHhcCCCCCccc---CHHHHHHhCCCCC
Confidence 77777777778887665322111110 1355677777654
No 219
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.17 E-value=0.0032 Score=67.31 Aligned_cols=149 Identities=16% Similarity=0.204 Sum_probs=78.6
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhhccccceEEEEechhhhcccChHHHHHHHHHHHhccccccccchhhhHHHHHHHhc
Q 003802 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWRLC 95 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~ 95 (794)
+-|.|+|++|+|||+||+.++......| +.+.... .... .... ........+.....
T Consensus 50 ~gvLL~GppGtGKT~Laraia~~~~~~f---~~is~~~-~~~~--~~g~-----------------~~~~~r~lf~~A~~ 106 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLARAVAGEANVPF---FHISGSD-FVEL--FVGV-----------------GAARVRDLFAQAKA 106 (476)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHTCCE---EEEEGGG-TTTC--CTTH-----------------HHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCe---eeCCHHH-HHHH--Hhcc-----------------cHHHHHHHHHHHHh
Confidence 3478999999999999999999764332 2333111 1000 0000 00111223333444
Q ss_pred CCeEEEEEcCCCCh----------------HHHHHHhcCCC--CCCCCCEEEEEeCChhhhh-h-cC---cCcEEEcCCC
Q 003802 96 RKRVLVILDDVDQL----------------EQLQALVGNHD--WFGFGSRIIITSRDEHVLK-S-HG---VTNTYKVRGL 152 (794)
Q Consensus 96 ~~r~LlVlDd~~~~----------------~~~~~l~~~~~--~~~~gs~IlvTtR~~~v~~-~-~~---~~~~~~l~~L 152 (794)
..+.+|+||+++.. .....++..+. ....+..||.||....... . .. -...+.++..
T Consensus 107 ~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~P 186 (476)
T 2ce7_A 107 HAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPP 186 (476)
T ss_dssp TCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCC
T ss_pred cCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhchhhcccCcceeEeecCCC
Confidence 67899999998542 11233332111 0123556666776654321 1 11 2337788888
Q ss_pred ChHhHHHHHHhhccCCCCCChhHHHHHHHHHHHhCCCc
Q 003802 153 DYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLP 190 (794)
Q Consensus 153 ~~~ea~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 190 (794)
+.++-.++++.++....-... .....+++.+.|..
T Consensus 187 d~~~R~~Il~~~~~~~~l~~~---v~l~~la~~t~G~s 221 (476)
T 2ce7_A 187 DMLGRKKILEIHTRNKPLAED---VNLEIIAKRTPGFV 221 (476)
T ss_dssp CHHHHHHHHHHHHTTSCBCTT---CCHHHHHHTCTTCC
T ss_pred CHHHHHHHHHHHHHhCCCcch---hhHHHHHHhcCCCc
Confidence 877777888766522211111 11344777777776
No 220
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.16 E-value=0.0028 Score=62.46 Aligned_cols=26 Identities=35% Similarity=0.360 Sum_probs=22.5
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhhc
Q 003802 16 RFIGICGMGGIGKTTLAKVLYNTLKD 41 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~~~~~ 41 (794)
+-|.|+|+.|+|||++|+.+++....
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~~~~ 71 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGEAKV 71 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred CeEEEECcCCCCHHHHHHHHHHHcCC
Confidence 45889999999999999999987643
No 221
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.15 E-value=0.002 Score=65.63 Aligned_cols=36 Identities=39% Similarity=0.349 Sum_probs=27.5
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEE
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~ 50 (794)
...+.|+|+.|+|||++|+.+++.....-...+.+.
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~ 82 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRID 82 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEE
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEee
Confidence 468999999999999999999997644333344554
No 222
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.14 E-value=0.0036 Score=65.65 Aligned_cols=30 Identities=37% Similarity=0.409 Sum_probs=25.4
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHHHHhhcc
Q 003802 13 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQ 42 (794)
Q Consensus 13 ~~~~vi~i~G~~GvGKTtLa~~v~~~~~~~ 42 (794)
...+=|.++|++|+|||.+|+++++.....
T Consensus 204 ~~prGiLL~GPPGtGKT~lakAiA~~~~~~ 233 (428)
T 4b4t_K 204 DPPRGVLLYGPPGTGKTMLVKAVANSTKAA 233 (428)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHHHHTCE
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 345678899999999999999999987544
No 223
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=97.13 E-value=0.0031 Score=65.16 Aligned_cols=165 Identities=8% Similarity=0.003 Sum_probs=101.9
Q ss_pred hhhhHhHhcCCCCeEEEEEEccCCCcHHHHHHHHHHHhh-ccccceEEEEechhhhcccChHHHHHHHHHHHhccccccc
Q 003802 2 EKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLK-DQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLII 80 (794)
Q Consensus 2 ~~l~~~l~~~~~~~~vi~i~G~~GvGKTtLa~~v~~~~~-~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 80 (794)
+++.+.+. + .-.++..++|+.|.||++.|+.+...+. ..|+....+. .....++.++...+...
T Consensus 7 ~~l~~~l~-~-~~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~--------- 71 (343)
T 1jr3_D 7 EQLRAQLN-E-GLRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFS----IDPNTDWNAIFSLCQAM--------- 71 (343)
T ss_dssp TTHHHHHH-H-CCCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEE----CCTTCCHHHHHHHHHHH---------
T ss_pred HHHHHHHh-c-CCCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEE----ecCCCCHHHHHHHhcCc---------
Confidence 35566665 3 3467999999999999999999988653 3453321121 11123443333332211
Q ss_pred cchhhhHHHHHHHhcCCeEEEEEcCCCC-h--HHHHHHhcCCCCCCCCCEEEEEeCC-------hhhhhhc-CcCcEEEc
Q 003802 81 WDVHKGINLIRWRLCRKRVLVILDDVDQ-L--EQLQALVGNHDWFGFGSRIIITSRD-------EHVLKSH-GVTNTYKV 149 (794)
Q Consensus 81 ~~~~~~~~~l~~~l~~~r~LlVlDd~~~-~--~~~~~l~~~~~~~~~gs~IlvTtR~-------~~v~~~~-~~~~~~~l 149 (794)
-+-+++-++|+|+++. . +.++.+...+....+++.+|+++.. ..+.... .....++.
T Consensus 72 ------------plf~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~ 139 (343)
T 1jr3_D 72 ------------SLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTC 139 (343)
T ss_dssp ------------HHCCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEE
T ss_pred ------------CCccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEe
Confidence 1235677888999865 3 4566666554433567777766642 2333333 34457899
Q ss_pred CCCChHhHHHHHHhhccCCCCCChhHHHHHHHHHHHhCCCchHHHH
Q 003802 150 RGLDYVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLPLAIEV 195 (794)
Q Consensus 150 ~~L~~~ea~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 195 (794)
.+++.++..+.+.+.+.... -...++.+..+++.++|....+..
T Consensus 140 ~~l~~~~l~~~l~~~~~~~g--~~i~~~a~~~l~~~~~gdl~~~~~ 183 (343)
T 1jr3_D 140 QTPEQAQLPRWVAARAKQLN--LELDDAANQVLCYCYEGNLLALAQ 183 (343)
T ss_dssp CCCCTTHHHHHHHHHHHHTT--CEECHHHHHHHHHSSTTCHHHHHH
T ss_pred eCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHhchHHHHHHH
Confidence 99999999988887762211 122346678899999998877654
No 224
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.13 E-value=0.0024 Score=64.94 Aligned_cols=26 Identities=31% Similarity=0.394 Sum_probs=22.8
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhh
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNTLK 40 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~~~ 40 (794)
.+.+.|+|++|+|||++|+.+++...
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhC
Confidence 35678999999999999999999764
No 225
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.13 E-value=4.8e-05 Score=67.47 Aligned_cols=24 Identities=17% Similarity=0.091 Sum_probs=20.6
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhh
Q 003802 17 FIGICGMGGIGKTTLAKVLYNTLK 40 (794)
Q Consensus 17 vi~i~G~~GvGKTtLa~~v~~~~~ 40 (794)
-|.|+|+.|+|||++|+.+++...
T Consensus 29 ~vll~G~~GtGKt~lA~~i~~~~~ 52 (143)
T 3co5_A 29 PVFLTGEAGSPFETVARYFHKNGT 52 (143)
T ss_dssp CEEEEEETTCCHHHHHGGGCCTTS
T ss_pred cEEEECCCCccHHHHHHHHHHhCC
Confidence 477999999999999999987543
No 226
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.11 E-value=0.0016 Score=62.48 Aligned_cols=45 Identities=20% Similarity=0.173 Sum_probs=31.5
Q ss_pred hhhHhHhcCCCCeEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEE
Q 003802 3 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (794)
Q Consensus 3 ~l~~~l~~~~~~~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~ 50 (794)
.+.+++..+-+.-.++.|+|++|+||||+|..++. . .-..++|++
T Consensus 8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~-~~~~v~~i~ 52 (220)
T 2cvh_A 8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--L-SGKKVAYVD 52 (220)
T ss_dssp HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--H-HCSEEEEEE
T ss_pred HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--H-cCCcEEEEE
Confidence 44455543333346899999999999999999988 2 224567776
No 227
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.05 E-value=0.0012 Score=76.43 Aligned_cols=126 Identities=16% Similarity=0.133 Sum_probs=67.2
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhhccccceEEEEechhhhcccChHHHHHHHHHHHhccccccccchhhhHHHHHHHhc
Q 003802 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWRLC 95 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~ 95 (794)
..+.++|++|+|||++|+.+++.....-...+.+++.. ........ .......+++
T Consensus 522 ~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~-~~~~~~~~--------------------~~~l~~~~~~--- 577 (758)
T 3pxi_A 522 GSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSE-YMEKHSTS--------------------GGQLTEKVRR--- 577 (758)
T ss_dssp EEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGG-GCSSCCCC-----------------------CHHHHHH---
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechh-cccccccc--------------------cchhhHHHHh---
Confidence 47899999999999999999997644333445555221 11111110 0011111111
Q ss_pred CCeEEEEEcCCCChH--HHHHHhcCCCC-----------CCCCCEEEEEeCCh-----hh----hhhc-----C-cCcEE
Q 003802 96 RKRVLVILDDVDQLE--QLQALVGNHDW-----------FGFGSRIIITSRDE-----HV----LKSH-----G-VTNTY 147 (794)
Q Consensus 96 ~~r~LlVlDd~~~~~--~~~~l~~~~~~-----------~~~gs~IlvTtR~~-----~v----~~~~-----~-~~~~~ 147 (794)
...-+|+||+++... ....+...+.. .....+||.||... .+ ...+ . ....+
T Consensus 578 ~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i 657 (758)
T 3pxi_A 578 KPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFINRIDEII 657 (758)
T ss_dssp CSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHTTSSEEE
T ss_pred CCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHhhCCeEE
Confidence 233489999996543 23333322110 12356888888731 11 1111 1 23478
Q ss_pred EcCCCChHhHHHHHHhhc
Q 003802 148 KVRGLDYVEALQLFHLKV 165 (794)
Q Consensus 148 ~l~~L~~~ea~~lf~~~~ 165 (794)
.+.++++++..+++....
T Consensus 658 ~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 658 VFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp ECC--CHHHHHHHHHHHH
T ss_pred ecCCCCHHHHHHHHHHHH
Confidence 889999988888776543
No 228
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.02 E-value=0.0012 Score=66.63 Aligned_cols=37 Identities=19% Similarity=0.142 Sum_probs=25.8
Q ss_pred hhhHhHhcCCCCeEEEEEEccCCCcHHHHHHHHHHHh
Q 003802 3 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTL 39 (794)
Q Consensus 3 ~l~~~l~~~~~~~~vi~i~G~~GvGKTtLa~~v~~~~ 39 (794)
++.+.+.........|.|+|++|+|||++|+.+++..
T Consensus 13 ~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 13 HLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp HHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred HHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 4444444322223457799999999999999999854
No 229
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.02 E-value=0.0036 Score=67.50 Aligned_cols=136 Identities=12% Similarity=0.054 Sum_probs=67.8
Q ss_pred hhhHhHhcCCCCeEEEEEEccCCCcHHHHHHHHHHHhhccc-----cceEEEEechhhhcccChHHHHHHHHHHHhcccc
Q 003802 3 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQF-----EASSFLANVREVSVTRGLVPLQEQLLSEVLMERD 77 (794)
Q Consensus 3 ~l~~~l~~~~~~~~vi~i~G~~GvGKTtLa~~v~~~~~~~f-----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 77 (794)
++.+.+... ...-+.|+|++|+|||++|+.+++.+...+ ...-++. +... ....+.
T Consensus 191 ~l~~~l~r~--~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~----l~~~-----------~~~~g~-- 251 (468)
T 3pxg_A 191 RVIEVLSRR--TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMT----LDMG-----------TKYRGE-- 251 (468)
T ss_dssp HHHHHHHCS--SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEEC----C----------------------
T ss_pred HHHHHHhcc--CCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE----eeCC-----------ccccch--
Confidence 344455442 223457999999999999999999764332 1122221 1000 000000
Q ss_pred ccccchhhhHHHHHHHhcCCeEEEEEcCCCChHHHHHHhcCCCCCCCCCEEEEEeCChhhhh-------hcCcCcEEEcC
Q 003802 78 LIIWDVHKGINLIRWRLCRKRVLVILDDVDQLEQLQALVGNHDWFGFGSRIIITSRDEHVLK-------SHGVTNTYKVR 150 (794)
Q Consensus 78 ~~~~~~~~~~~~l~~~l~~~r~LlVlDd~~~~~~~~~l~~~~~~~~~gs~IlvTtR~~~v~~-------~~~~~~~~~l~ 150 (794)
........+...-+.++.+|++| ...+....+.+.+. ....++|.+|....... .......+.++
T Consensus 252 ----~e~~~~~~~~~~~~~~~~iLfiD--~~~~a~~~L~~~L~--~g~v~vI~at~~~e~~~~~~~~~al~~Rf~~i~v~ 323 (468)
T 3pxg_A 252 ----FEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDAALERRFQPIQVD 323 (468)
T ss_dssp -----CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTTCSHHHHSEEEEECC
T ss_pred ----HHHHHHHHHHHHHhcCCeEEEEe--CchhHHHHHHHhhc--CCCEEEEecCCHHHHHHHhhcCHHHHHhCccceeC
Confidence 00111222222333567899999 22233344444443 22355666655443111 11122368999
Q ss_pred CCChHhHHHHHHhhc
Q 003802 151 GLDYVEALQLFHLKV 165 (794)
Q Consensus 151 ~L~~~ea~~lf~~~~ 165 (794)
..+.++..+++....
T Consensus 324 ~p~~e~~~~iL~~~~ 338 (468)
T 3pxg_A 324 QPSVDESIQILQGLR 338 (468)
T ss_dssp CCCHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999999998765
No 230
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.01 E-value=0.005 Score=64.64 Aligned_cols=149 Identities=13% Similarity=0.089 Sum_probs=76.6
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEEechhhhcccChHHHHHHHHHHHhccccccccchhhhHHHHHH
Q 003802 13 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRW 92 (794)
Q Consensus 13 ~~~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~ 92 (794)
+..+=|.++||+|+|||.+|+++++.....| +.+....-.+.... +.+...+.+..
T Consensus 213 ~~prGvLLyGPPGTGKTllAkAiA~e~~~~f---~~v~~s~l~~~~vG---------------------ese~~ir~lF~ 268 (434)
T 4b4t_M 213 RAPKGALMYGPPGTGKTLLARACAAQTNATF---LKLAAPQLVQMYIG---------------------EGAKLVRDAFA 268 (434)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHHTCEE---EEEEGGGGCSSCSS---------------------HHHHHHHHHHH
T ss_pred CCCCeeEEECcCCCCHHHHHHHHHHHhCCCE---EEEehhhhhhcccc---------------------hHHHHHHHHHH
Confidence 3467788999999999999999999865443 22321111111000 00111111111
Q ss_pred -HhcCCeEEEEEcCCCChH----------------HHHHHhcCCCC--CCCCCEEEEEeCChhhh-hhc----CcCcEEE
Q 003802 93 -RLCRKRVLVILDDVDQLE----------------QLQALVGNHDW--FGFGSRIIITSRDEHVL-KSH----GVTNTYK 148 (794)
Q Consensus 93 -~l~~~r~LlVlDd~~~~~----------------~~~~l~~~~~~--~~~gs~IlvTtR~~~v~-~~~----~~~~~~~ 148 (794)
.-+..+++|++|+++..- ....++..+.. ...+..||.||...... ..+ .-+..+.
T Consensus 269 ~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~ 348 (434)
T 4b4t_M 269 LAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIE 348 (434)
T ss_dssp HHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEE
T ss_pred HHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchhcCHhHhcCCceeEEEE
Confidence 122468999999984320 12223322221 12344555566554321 221 2244678
Q ss_pred cCCCChHhHHHHHHhhccCCC-CCChhHHHHHHHHHHHhCCC
Q 003802 149 VRGLDYVEALQLFHLKVSNGK-QPTDYRVELSKYVVNYAGGL 189 (794)
Q Consensus 149 l~~L~~~ea~~lf~~~~~~~~-~~~~~~~~~~~~i~~~~~g~ 189 (794)
++.-+.++-.++|+.+...-. ...-. ..+|++.+.|.
T Consensus 349 i~lPd~~~R~~Il~~~~~~~~~~~dvd----l~~lA~~t~G~ 386 (434)
T 4b4t_M 349 FPLPSEDSRAQILQIHSRKMTTDDDIN----WQELARSTDEF 386 (434)
T ss_dssp CCCCCHHHHHHHHHHHHHHSCBCSCCC----HHHHHHHCSSC
T ss_pred eCCcCHHHHHHHHHHHhcCCCCCCcCC----HHHHHHhCCCC
Confidence 887787777888876542111 11111 35567777664
No 231
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.98 E-value=0.00078 Score=67.00 Aligned_cols=72 Identities=15% Similarity=0.201 Sum_probs=43.9
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEEechhhhcccChHHHHHHHHHHHhccccccccchhhhHHHHHHHh
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWRL 94 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l 94 (794)
-+++.|+|++|+|||+||.+++.. . . ..+.|+.... ....+. .. .+.+...+.+.+.+
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~-~-G-~~VlyIs~~~--eE~v~~--------------~~---~~le~~l~~i~~~l 180 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA-L-G-GKDKYATVRF--GEPLSG--------------YN---TDFNVFVDDIARAM 180 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH-H-H-TTSCCEEEEB--SCSSTT--------------CB---CCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh-C-C-CCEEEEEecc--hhhhhh--------------hh---cCHHHHHHHHHHHH
Confidence 367889999999999999999886 1 1 2345665300 000000 00 23344445555556
Q ss_pred cCCeEEEEEcCCCCh
Q 003802 95 CRKRVLVILDDVDQL 109 (794)
Q Consensus 95 ~~~r~LlVlDd~~~~ 109 (794)
...+ ++|+|++...
T Consensus 181 ~~~~-LLVIDsI~aL 194 (331)
T 2vhj_A 181 LQHR-VIVIDSLKNV 194 (331)
T ss_dssp HHCS-EEEEECCTTT
T ss_pred hhCC-EEEEeccccc
Confidence 5556 9999998654
No 232
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.97 E-value=0.0025 Score=74.61 Aligned_cols=139 Identities=12% Similarity=0.043 Sum_probs=66.9
Q ss_pred hhhHhHhcCCCCeEEEEEEccCCCcHHHHHHHHHHHhhccc------cc-eEEEEechhhhcccChHHHHHHHHHHHhcc
Q 003802 3 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQF------EA-SSFLANVREVSVTRGLVPLQEQLLSEVLME 75 (794)
Q Consensus 3 ~l~~~l~~~~~~~~vi~i~G~~GvGKTtLa~~v~~~~~~~f------~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 75 (794)
++.+.+... ..+.+.|+|++|+|||++|+.+++.+.... .. +++++. . .+ ... ..
T Consensus 181 ~l~~~l~~~--~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~-~------~l---~~g------~~ 242 (854)
T 1qvr_A 181 RVIQILLRR--TKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQM-G------SL---LAG------AK 242 (854)
T ss_dssp HHHHHHHCS--SCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC------------------------
T ss_pred HHHHHHhcC--CCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeeh-H------Hh---hcc------Cc
Confidence 344444442 234568999999999999999999764321 12 222221 0 00 000 00
Q ss_pred ccccccchhhhHHHHHHHh-c-CCeEEEEEcCCCChHH-------H---HHHhcCCCCCCCCCEEEEEeCChhh-----h
Q 003802 76 RDLIIWDVHKGINLIRWRL-C-RKRVLVILDDVDQLEQ-------L---QALVGNHDWFGFGSRIIITSRDEHV-----L 138 (794)
Q Consensus 76 ~~~~~~~~~~~~~~l~~~l-~-~~r~LlVlDd~~~~~~-------~---~~l~~~~~~~~~gs~IlvTtR~~~v-----~ 138 (794)
...+.......+.+.+ + +++.+|++|+++.... + ..+.+.+. ..+..+|.+|..... .
T Consensus 243 ---~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~--~~~i~~I~at~~~~~~~~~~d 317 (854)
T 1qvr_A 243 ---YRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALA--RGELRLIGATTLDEYREIEKD 317 (854)
T ss_dssp ------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHH--TTCCCEEEEECHHHHHHHTTC
T ss_pred ---cchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHh--CCCeEEEEecCchHHhhhccC
Confidence 0001112222222222 2 3678999999976531 1 11222111 123445555554332 1
Q ss_pred hhc-CcCcEEEcCCCChHhHHHHHHhh
Q 003802 139 KSH-GVTNTYKVRGLDYVEALQLFHLK 164 (794)
Q Consensus 139 ~~~-~~~~~~~l~~L~~~ea~~lf~~~ 164 (794)
..+ .....+.+++.+.++..++++..
T Consensus 318 ~aL~rRf~~i~l~~p~~~e~~~iL~~~ 344 (854)
T 1qvr_A 318 PALERRFQPVYVDEPTVEETISILRGL 344 (854)
T ss_dssp TTTCSCCCCEEECCCCHHHHHHHHHHH
T ss_pred HHHHhCCceEEeCCCCHHHHHHHHHhh
Confidence 111 12235889999999999998754
No 233
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.92 E-value=0.0083 Score=62.17 Aligned_cols=30 Identities=33% Similarity=0.399 Sum_probs=25.5
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHHHhhccc
Q 003802 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQF 43 (794)
Q Consensus 14 ~~~vi~i~G~~GvGKTtLa~~v~~~~~~~f 43 (794)
-.+=|.++|++|+|||.+|+++++.....|
T Consensus 215 ~prGvLLyGPPGTGKTlLAkAiA~e~~~~f 244 (437)
T 4b4t_I 215 PPKGVILYGAPGTGKTLLAKAVANQTSATF 244 (437)
T ss_dssp CCSEEEEESSTTTTHHHHHHHHHHHHTCEE
T ss_pred CCCCCceECCCCchHHHHHHHHHHHhCCCE
Confidence 356788999999999999999999876543
No 234
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.88 E-value=0.0055 Score=70.87 Aligned_cols=141 Identities=11% Similarity=0.071 Sum_probs=73.5
Q ss_pred hhhHhHhcCCCCeEEEEEEccCCCcHHHHHHHHHHHhhcc------ccceEEEEechhhhcccChHHHHHHHHHHHhccc
Q 003802 3 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ------FEASSFLANVREVSVTRGLVPLQEQLLSEVLMER 76 (794)
Q Consensus 3 ~l~~~l~~~~~~~~vi~i~G~~GvGKTtLa~~v~~~~~~~------f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 76 (794)
++.+.+... ...-+.|+|++|+|||++|+.+++.+... ....+|........ ..
T Consensus 197 ~l~~~l~~~--~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~----------------~~-- 256 (758)
T 1r6b_X 197 RAIQVLCRR--RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLL----------------AG-- 256 (758)
T ss_dssp HHHHHHTSS--SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC-------------------CC--
T ss_pred HHHHHHhcc--CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHh----------------cc--
Confidence 344444433 23456799999999999999999865322 12223321110000 00
Q ss_pred cccccchhhhHHHHHHHh-cCCeEEEEEcCCCCh----------HH-HHHHhcCCCCCCCCCEEEEEeCChhhhhhc---
Q 003802 77 DLIIWDVHKGINLIRWRL-CRKRVLVILDDVDQL----------EQ-LQALVGNHDWFGFGSRIIITSRDEHVLKSH--- 141 (794)
Q Consensus 77 ~~~~~~~~~~~~~l~~~l-~~~r~LlVlDd~~~~----------~~-~~~l~~~~~~~~~gs~IlvTtR~~~v~~~~--- 141 (794)
.....+.+.....+.+.+ +.++.+|++|+++.. .+ ...+...+. ..+..+|.+|.........
T Consensus 257 ~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~--~~~~~~I~at~~~~~~~~~~~d 334 (758)
T 1r6b_X 257 TKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS--SGKIRVIGSTTYQEFSNIFEKD 334 (758)
T ss_dssp CCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS--SCCCEEEEEECHHHHHCCCCCT
T ss_pred ccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh--CCCeEEEEEeCchHHhhhhhcC
Confidence 000111222222233333 345789999999754 22 223333332 2345666666654322111
Q ss_pred ----CcCcEEEcCCCChHhHHHHHHhhc
Q 003802 142 ----GVTNTYKVRGLDYVEALQLFHLKV 165 (794)
Q Consensus 142 ----~~~~~~~l~~L~~~ea~~lf~~~~ 165 (794)
.....+.+...+.++..+++....
T Consensus 335 ~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 335 RALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp TSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred HHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 112368889999999888887643
No 235
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.86 E-value=0.005 Score=60.49 Aligned_cols=23 Identities=30% Similarity=0.528 Sum_probs=21.3
Q ss_pred EEEEccCCCcHHHHHHHHHHHhh
Q 003802 18 IGICGMGGIGKTTLAKVLYNTLK 40 (794)
Q Consensus 18 i~i~G~~GvGKTtLa~~v~~~~~ 40 (794)
+.|+|+.|+||||||+.++....
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~~ 74 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEAR 74 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 88999999999999999998765
No 236
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.83 E-value=0.0015 Score=71.86 Aligned_cols=28 Identities=32% Similarity=0.508 Sum_probs=24.2
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhhcc
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQ 42 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~~~~~ 42 (794)
..++.|+|++|+||||+|+.++......
T Consensus 108 g~~vll~Gp~GtGKTtlar~ia~~l~~~ 135 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTSLAKSIAKSLGRK 135 (543)
T ss_dssp SCEEEEESSSSSSHHHHHHHHHHHHTCE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 4589999999999999999999976443
No 237
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.83 E-value=0.019 Score=66.28 Aligned_cols=135 Identities=11% Similarity=0.067 Sum_probs=68.6
Q ss_pred hhhHhHhcCCCCeEEEEEEccCCCcHHHHHHHHHHHhhccc-----cceEEEEechhhhcccChHHHHHHHHHHHhcccc
Q 003802 3 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQF-----EASSFLANVREVSVTRGLVPLQEQLLSEVLMERD 77 (794)
Q Consensus 3 ~l~~~l~~~~~~~~vi~i~G~~GvGKTtLa~~v~~~~~~~f-----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 77 (794)
++...+.... ..-+.|+|++|+|||++|+.+++.+.... ....++. +.. ... ..
T Consensus 191 ~l~~~l~~~~--~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~----~~~-----------g~~----~~ 249 (758)
T 3pxi_A 191 RVIEVLSRRT--KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMT----LDM-----------GTK----YR 249 (758)
T ss_dssp HHHHHHHCSS--SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEEC----C----------------------
T ss_pred HHHHHHhCCC--CCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEE----ecc-----------ccc----cc
Confidence 4445554422 23467999999999999999999763321 1111221 100 000 00
Q ss_pred ccccchh-hhHHHHHHHhcCCeEEEEEcCCCChHHHHHHhcCCCCCCCCCEEEEEeCChhhhh------h-cCcCcEEEc
Q 003802 78 LIIWDVH-KGINLIRWRLCRKRVLVILDDVDQLEQLQALVGNHDWFGFGSRIIITSRDEHVLK------S-HGVTNTYKV 149 (794)
Q Consensus 78 ~~~~~~~-~~~~~l~~~l~~~r~LlVlDd~~~~~~~~~l~~~~~~~~~gs~IlvTtR~~~v~~------~-~~~~~~~~l 149 (794)
.+.+ .....+......++.+|++| ...+....+.+.+. ....++|.||....... . ......+.+
T Consensus 250 ---G~~e~~l~~~~~~~~~~~~~iLfiD--~~~~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~d~al~rRf~~i~v 322 (758)
T 3pxi_A 250 ---GEFEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDAALERRFQPIQV 322 (758)
T ss_dssp ------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTTCSHHHHSEEEEEC
T ss_pred ---chHHHHHHHHHHHHHhcCCEEEEEc--CchhHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhccHHHHhhCcEEEe
Confidence 0111 11222333334678899999 22233344444443 23456666666543211 0 111246899
Q ss_pred CCCChHhHHHHHHhhc
Q 003802 150 RGLDYVEALQLFHLKV 165 (794)
Q Consensus 150 ~~L~~~ea~~lf~~~~ 165 (794)
+..+.++..+++....
T Consensus 323 ~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 323 DQPSVDESIQILQGLR 338 (758)
T ss_dssp CCCCHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999998654
No 238
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.79 E-value=0.0013 Score=60.43 Aligned_cols=112 Identities=18% Similarity=0.039 Sum_probs=55.9
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhhccccceEEEEechhhhcccChHHHHHHHHHHHhcc---------ccc-----ccc
Q 003802 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLME---------RDL-----IIW 81 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---------~~~-----~~~ 81 (794)
..|.|++..|.||||.|...+-+...+=-.+.++.- ... ....-...++..+... ... ...
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF----~Kg-~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~ 103 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQF----IKG-TWPNGERNLLEPHGVEFQVMATGFTWETQNREADTA 103 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEES----SCC-SSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEe----eCC-CCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHH
Confidence 456666667799999999888754433223333321 110 0111122233332100 000 001
Q ss_pred chhhhHHHHHHHhcCCe-EEEEEcCCCC--------hHHHHHHhcCCCCCCCCCEEEEEeCCh
Q 003802 82 DVHKGINLIRWRLCRKR-VLVILDDVDQ--------LEQLQALVGNHDWFGFGSRIIITSRDE 135 (794)
Q Consensus 82 ~~~~~~~~l~~~l~~~r-~LlVlDd~~~--------~~~~~~l~~~~~~~~~gs~IlvTtR~~ 135 (794)
.........++.+.+.+ =|||||++.. .+++-++.... .....||+|+|..
T Consensus 104 ~a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~R---p~~~~vIlTGr~a 163 (196)
T 1g5t_A 104 ACMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNAR---PGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTS---CTTCEEEEECSSC
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhC---cCCCEEEEECCCC
Confidence 12233344555565444 5999998732 23333333332 3577899999984
No 239
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.77 E-value=0.0079 Score=59.98 Aligned_cols=23 Identities=30% Similarity=0.528 Sum_probs=21.4
Q ss_pred EEEEccCCCcHHHHHHHHHHHhh
Q 003802 18 IGICGMGGIGKTTLAKVLYNTLK 40 (794)
Q Consensus 18 i~i~G~~GvGKTtLa~~v~~~~~ 40 (794)
|.|+|+.|+||||||+.++....
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~~ 98 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEAR 98 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCcChHHHHHHHHHHHcC
Confidence 88999999999999999998765
No 240
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.75 E-value=0.013 Score=58.08 Aligned_cols=124 Identities=17% Similarity=0.120 Sum_probs=65.5
Q ss_pred EEEEccCCCcHHHHHHHHHHHhhccccceEEEEechhhhcccChHHHHHHHHHHHhccccccccchhhhHHHHHHHh-cC
Q 003802 18 IGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWRL-CR 96 (794)
Q Consensus 18 i~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l-~~ 96 (794)
+.|+|+.|+||||||+.++..... ..+++... .+.. ....+..+ .+..+.+.. ..
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~~---~~i~i~g~-~l~~-~~~~~~~~-------------------~i~~vf~~a~~~ 102 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESGL---NFISVKGP-ELLN-MYVGESER-------------------AVRQVFQRAKNS 102 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTTC---EEEEEETT-TTCS-STTHHHHH-------------------HHHHHHHHHHHT
T ss_pred EEEECCCCCcHHHHHHHHHHHcCC---CEEEEEcH-HHHh-hhhhHHHH-------------------HHHHHHHHHHhc
Confidence 899999999999999999986543 23444311 1100 00111101 111122221 34
Q ss_pred CeEEEEEcCCCChH-------------HHHHHhcCCC--CCCCCCEEEEEeCChhhhhh-c----CcCcEEEcCCCChHh
Q 003802 97 KRVLVILDDVDQLE-------------QLQALVGNHD--WFGFGSRIIITSRDEHVLKS-H----GVTNTYKVRGLDYVE 156 (794)
Q Consensus 97 ~r~LlVlDd~~~~~-------------~~~~l~~~~~--~~~~gs~IlvTtR~~~v~~~-~----~~~~~~~l~~L~~~e 156 (794)
.+.++++|+++... ....+...+. .......++.+|....+... . .-...+.++.-+.++
T Consensus 103 ~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~ 182 (274)
T 2x8a_A 103 APCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPAD 182 (274)
T ss_dssp CSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHH
T ss_pred CCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHH
Confidence 67889999986421 1112211111 01223445556665544221 1 234567888888888
Q ss_pred HHHHHHhhc
Q 003802 157 ALQLFHLKV 165 (794)
Q Consensus 157 a~~lf~~~~ 165 (794)
-.++++...
T Consensus 183 r~~il~~~~ 191 (274)
T 2x8a_A 183 RLAILKTIT 191 (274)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 888887765
No 241
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.74 E-value=0.0026 Score=65.06 Aligned_cols=97 Identities=15% Similarity=0.109 Sum_probs=53.6
Q ss_pred hhhHhHh-cCCCCeEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEEechhhhcccChHHHHHHHHHHHhccccc---
Q 003802 3 KMNGYLE-AGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDL--- 78 (794)
Q Consensus 3 ~l~~~l~-~~~~~~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--- 78 (794)
++...|. .+-+.-+++.|.|++|+||||||.+++......=..++|++.. ...+.. .++.+....+.
T Consensus 48 ~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E----~s~~~~-----ra~rlgv~~~~l~i 118 (356)
T 3hr8_A 48 AIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAE----HALDPV-----YAKNLGVDLKSLLI 118 (356)
T ss_dssp HHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS----CCCCHH-----HHHHHTCCGGGCEE
T ss_pred HHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecc----cccchH-----HHHHcCCchhhhhh
Confidence 3444444 2333457999999999999999999998654433456787622 122211 22222221111
Q ss_pred -cccchhhhHHHHHHHhc-CCeEEEEEcCCCC
Q 003802 79 -IIWDVHKGINLIRWRLC-RKRVLVILDDVDQ 108 (794)
Q Consensus 79 -~~~~~~~~~~~l~~~l~-~~r~LlVlDd~~~ 108 (794)
...+.++....+....+ .+.-++|+|.+..
T Consensus 119 ~~~~~~e~~l~~~~~l~~~~~~dlvVIDSi~~ 150 (356)
T 3hr8_A 119 SQPDHGEQALEIVDELVRSGVVDLIVVDSVAA 150 (356)
T ss_dssp ECCSSHHHHHHHHHHHHHTSCCSEEEEECTTT
T ss_pred hhccCHHHHHHHHHHHhhhcCCCeEEehHhhh
Confidence 11233444444444443 4556888998743
No 242
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.72 E-value=0.0031 Score=63.78 Aligned_cols=46 Identities=20% Similarity=0.226 Sum_probs=32.1
Q ss_pred hHhHhcCCCC-eEEEEEEccCCCcHHHHHHHHHHHhh-ccccceEEEE
Q 003802 5 NGYLEAGLDD-VRFIGICGMGGIGKTTLAKVLYNTLK-DQFEASSFLA 50 (794)
Q Consensus 5 ~~~l~~~~~~-~~vi~i~G~~GvGKTtLa~~v~~~~~-~~f~~~~~~~ 50 (794)
.+++....+. .+.+.|+|+.|+|||+||+.+++... ..-..++++.
T Consensus 141 ~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~ 188 (308)
T 2qgz_A 141 LDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLH 188 (308)
T ss_dssp HHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEE
T ss_pred HHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 3455543222 46788999999999999999999765 4434455554
No 243
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.72 E-value=0.0038 Score=70.79 Aligned_cols=151 Identities=16% Similarity=0.113 Sum_probs=79.3
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEEechhhhcccChHHHHHHHHHHHhccccccccchhhhHHHHHHH
Q 003802 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWR 93 (794)
Q Consensus 14 ~~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~ 93 (794)
.++-|.++|++|+|||+||+.+++.....| +.+....-++.... .........+...
T Consensus 237 ~p~GILL~GPPGTGKT~LAraiA~elg~~~---~~v~~~~l~sk~~g--------------------ese~~lr~lF~~A 293 (806)
T 3cf2_A 237 PPRGILLYGPPGTGKTLIARAVANETGAFF---FLINGPEIMSKLAG--------------------ESESNLRKAFEEA 293 (806)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHTTTTCEE---EEEEHHHHHSSCTT--------------------HHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCCeE---EEEEhHHhhcccch--------------------HHHHHHHHHHHHH
Confidence 357789999999999999999998765432 33331111110000 0111112222233
Q ss_pred hcCCeEEEEEcCCCChH-------------HHHHHhcCCC--CCCCCCEEEEEeCCh-hhhhhc----CcCcEEEcCCCC
Q 003802 94 LCRKRVLVILDDVDQLE-------------QLQALVGNHD--WFGFGSRIIITSRDE-HVLKSH----GVTNTYKVRGLD 153 (794)
Q Consensus 94 l~~~r~LlVlDd~~~~~-------------~~~~l~~~~~--~~~~gs~IlvTtR~~-~v~~~~----~~~~~~~l~~L~ 153 (794)
.+..+.+|+||+++..- ....++.... ....+..||.||... .+...+ .-...+++..-+
T Consensus 294 ~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd 373 (806)
T 3cf2_A 294 EKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPD 373 (806)
T ss_dssp TTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCC
T ss_pred HHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecCChhhcCHHHhCCcccceEEecCCCC
Confidence 34678999999985431 1222222111 012234455555543 222222 124578888888
Q ss_pred hHhHHHHHHhhccCCCCCChhHHHHHHHHHHHhCCCc
Q 003802 154 YVEALQLFHLKVSNGKQPTDYRVELSKYVVNYAGGLP 190 (794)
Q Consensus 154 ~~ea~~lf~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 190 (794)
.++-.++++....+...... ....+|++++.|.-
T Consensus 374 ~~~R~~IL~~~l~~~~~~~d---vdl~~lA~~T~Gfs 407 (806)
T 3cf2_A 374 ATGRLEILQIHTKNMKLADD---VDLEQVANETHGHV 407 (806)
T ss_dssp HHHHHHHHHHTCSSSEECTT---CCHHHHHHHCCSCC
T ss_pred HHHHHHHHHHHhcCCCCCcc---cCHHHHHHhcCCCC
Confidence 88888888876532211111 12456777887764
No 244
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.67 E-value=0.0032 Score=60.79 Aligned_cols=48 Identities=21% Similarity=0.281 Sum_probs=32.2
Q ss_pred hhhHhHhcCCCCeEEEEEEccCCCcHHHHHHHHHHHhhc------cccceEEEE
Q 003802 3 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKD------QFEASSFLA 50 (794)
Q Consensus 3 ~l~~~l~~~~~~~~vi~i~G~~GvGKTtLa~~v~~~~~~------~f~~~~~~~ 50 (794)
.+.+++..+-+.-.+++|+|+.|+|||||++.++..... .-..++|+.
T Consensus 13 ~LD~~l~ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~ 66 (231)
T 4a74_A 13 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWID 66 (231)
T ss_dssp HHHHHTTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEE
T ss_pred hHHhHhcCCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEE
Confidence 344444333334479999999999999999999874322 123467775
No 245
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.62 E-value=0.0029 Score=61.31 Aligned_cols=35 Identities=20% Similarity=0.279 Sum_probs=26.5
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhhccccceEEEE
Q 003802 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~ 50 (794)
.+++|.|+.|+|||||++.++......-..+.|+.
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~ 58 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVT 58 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 68999999999999999999875433223455654
No 246
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.56 E-value=0.00085 Score=66.73 Aligned_cols=27 Identities=30% Similarity=0.304 Sum_probs=22.8
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhhcc
Q 003802 16 RFIGICGMGGIGKTTLAKVLYNTLKDQ 42 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~~~~~~ 42 (794)
+-|.|+|++|+|||++|+.+++.....
T Consensus 45 ~~vll~G~~GtGKT~la~~la~~~~~~ 71 (268)
T 2r62_A 45 KGVLLVGPPGTGKTLLAKAVAGEAHVP 71 (268)
T ss_dssp SCCCCBCSSCSSHHHHHHHHHHHHTCC
T ss_pred ceEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 347799999999999999999976543
No 247
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.54 E-value=0.0028 Score=62.23 Aligned_cols=36 Identities=25% Similarity=0.227 Sum_probs=26.0
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhh-ccccceEEEE
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNTLK-DQFEASSFLA 50 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~~~-~~f~~~~~~~ 50 (794)
-.+++|.|+.|+|||||++.++.... ..-..++++.
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~ 66 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVT 66 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 46999999999999999999985221 2223455554
No 248
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.47 E-value=0.0057 Score=59.61 Aligned_cols=48 Identities=17% Similarity=0.241 Sum_probs=33.3
Q ss_pred hhhHhHhcCCCCeEEEEEEccCCCcHHHHHHHHHHHhhc------cccceEEEE
Q 003802 3 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKD------QFEASSFLA 50 (794)
Q Consensus 3 ~l~~~l~~~~~~~~vi~i~G~~GvGKTtLa~~v~~~~~~------~f~~~~~~~ 50 (794)
.+.+++..+-+.-.++.|.|++|+|||||++.++..+.. .-..++|+.
T Consensus 12 ~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~ 65 (243)
T 1n0w_A 12 ELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYID 65 (243)
T ss_dssp HHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEE
T ss_pred HHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEE
Confidence 455555433333469999999999999999999885321 134577776
No 249
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.47 E-value=0.011 Score=60.73 Aligned_cols=48 Identities=21% Similarity=0.241 Sum_probs=33.8
Q ss_pred hhhHhHhcCCCCeEEEEEEccCCCcHHHHHHHHHHHhhc------cccceEEEE
Q 003802 3 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKD------QFEASSFLA 50 (794)
Q Consensus 3 ~l~~~l~~~~~~~~vi~i~G~~GvGKTtLa~~v~~~~~~------~f~~~~~~~ 50 (794)
.+..++..+-+.-.++.|+|++|+|||++|..++..... .-..++|++
T Consensus 110 ~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~ 163 (343)
T 1v5w_A 110 EFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFID 163 (343)
T ss_dssp HHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEE
T ss_pred hHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEE
Confidence 344445434345679999999999999999999886422 224567876
No 250
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.44 E-value=0.0093 Score=59.03 Aligned_cols=48 Identities=17% Similarity=0.160 Sum_probs=34.0
Q ss_pred hhhhHhHh----cCCCCeEEEEEEccCCCcHHHHHHHHHHHhhcc--ccceEEEE
Q 003802 2 EKMNGYLE----AGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ--FEASSFLA 50 (794)
Q Consensus 2 ~~l~~~l~----~~~~~~~vi~i~G~~GvGKTtLa~~v~~~~~~~--f~~~~~~~ 50 (794)
.++...|. -+-+.- ++-|.|++|+||||||.+++...... =..++|++
T Consensus 12 ~~LD~~LGg~~~GGl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId 65 (333)
T 3io5_A 12 PMMNIALSGEITGGMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYD 65 (333)
T ss_dssp HHHHHHHHSSTTCCBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred HHHHHHhCCCCCCCCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 34556666 333333 78999999999999999988765443 24578887
No 251
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.41 E-value=0.0011 Score=63.03 Aligned_cols=110 Identities=14% Similarity=-0.066 Sum_probs=59.5
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEEechhhhcccChHHHHHHHHHHHhccccc-cccchhhhHHHHHHH
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDL-IIWDVHKGINLIRWR 93 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~l~~~ 93 (794)
-.++.++|+.|+||||++..++++...+-..+..+...- +-+ ...++.+.++..... .....++..+.+.+.
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~------d~r-~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~ 84 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKI------DTR-SIRNIQSRTGTSLPSVEVESAPEILNYIMSN 84 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECC------CGG-GCSSCCCCCCCSSCCEEESSTHHHHHHHHST
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEecc------Cch-HHHHHHHhcCCCccccccCCHHHHHHHHHHH
Confidence 468999999999999999999987765544444443110 100 111222222211111 112233444444444
Q ss_pred hcCCe-EEEEEcCCCCh--HHHHHHhcCCCCCCCCCEEEEEeCC
Q 003802 94 LCRKR-VLVILDDVDQL--EQLQALVGNHDWFGFGSRIIITSRD 134 (794)
Q Consensus 94 l~~~r-~LlVlDd~~~~--~~~~~l~~~~~~~~~gs~IlvTtR~ 134 (794)
..+.+ -+||+|.+... +.++.+.. +. ..|..|++|-+.
T Consensus 85 ~~~~~~dvViIDEaQ~l~~~~ve~l~~-L~--~~gi~Vil~Gl~ 125 (223)
T 2b8t_A 85 SFNDETKVIGIDEVQFFDDRICEVANI-LA--ENGFVVIISGLD 125 (223)
T ss_dssp TSCTTCCEEEECSGGGSCTHHHHHHHH-HH--HTTCEEEEECCS
T ss_pred hhCCCCCEEEEecCccCcHHHHHHHHH-HH--hCCCeEEEEecc
Confidence 44444 49999998543 33333322 11 126789999884
No 252
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.31 E-value=0.0089 Score=61.62 Aligned_cols=83 Identities=18% Similarity=0.181 Sum_probs=47.8
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEEechhhhcccChHHHHHHHHHHHhcccc----ccccchhhhHHHH
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERD----LIIWDVHKGINLI 90 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~~~~~~~~~~~l 90 (794)
-+++.|+|++|+||||+|..++......-..++|++.. ...+ .. ..+.+....+ ....+.++..+.+
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E----~s~~--~~---~a~~~g~d~~~l~i~~~~~~e~~l~~l 144 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAE----HALD--PV---YARALGVNTDELLVSQPDNGEQALEIM 144 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS----CCCC--HH---HHHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECC----CChh--HH---HHHHcCCCHHHceeecCCcHHHHHHHH
Confidence 45888999999999999999987654333467888732 2222 11 1222221111 0112334444555
Q ss_pred HHHhc-CCeEEEEEcCC
Q 003802 91 RWRLC-RKRVLVILDDV 106 (794)
Q Consensus 91 ~~~l~-~~r~LlVlDd~ 106 (794)
....+ ...-+||+|.+
T Consensus 145 ~~l~~~~~~~lVVIDsl 161 (366)
T 1xp8_A 145 ELLVRSGAIDVVVVDSV 161 (366)
T ss_dssp HHHHTTTCCSEEEEECT
T ss_pred HHHHhcCCCCEEEEeCh
Confidence 55444 34568999987
No 253
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.28 E-value=0.0092 Score=60.89 Aligned_cols=47 Identities=21% Similarity=0.354 Sum_probs=32.2
Q ss_pred hhHhHhcCCCCeEEEEEEccCCCcHHHHHHHHHHHhhcc------ccceEEEE
Q 003802 4 MNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ------FEASSFLA 50 (794)
Q Consensus 4 l~~~l~~~~~~~~vi~i~G~~GvGKTtLa~~v~~~~~~~------f~~~~~~~ 50 (794)
+..++..+-+.-.++.|+|++|+|||++|.+++...... -..++|++
T Consensus 96 LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~ 148 (324)
T 2z43_A 96 LDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYID 148 (324)
T ss_dssp HHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEE
T ss_pred HHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEE
Confidence 444443332334689999999999999999998764322 23567876
No 254
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.20 E-value=0.033 Score=55.39 Aligned_cols=31 Identities=32% Similarity=0.394 Sum_probs=26.0
Q ss_pred CCCCeEEEEEEccCCCcHHHHHHHHHHHhhc
Q 003802 11 GLDDVRFIGICGMGGIGKTTLAKVLYNTLKD 41 (794)
Q Consensus 11 ~~~~~~vi~i~G~~GvGKTtLa~~v~~~~~~ 41 (794)
......+|+|+|+.|+||||+|+.+...+..
T Consensus 27 ~~~~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 27 GNKCPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp TCCSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 3456789999999999999999999886543
No 255
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.11 E-value=0.019 Score=57.60 Aligned_cols=37 Identities=27% Similarity=0.272 Sum_probs=28.3
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEE
Q 003802 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (794)
Q Consensus 14 ~~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~ 50 (794)
...+|+|+|++|+||||++..++..++..-..+.++.
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~ 139 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAA 139 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEc
Confidence 4689999999999999999999986654323344443
No 256
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.06 E-value=0.033 Score=59.85 Aligned_cols=121 Identities=15% Similarity=0.185 Sum_probs=65.4
Q ss_pred EEEEccCCCcHHHHHHHHHHHhhccccceEEEEechhhhcccChHHHHHHHHHHHhccccccccchhhhHHHHHHHhc--
Q 003802 18 IGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWRLC-- 95 (794)
Q Consensus 18 i~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~-- 95 (794)
|.|+|+.|+|||+||+.++..... ..+.+.... +... ... .....+...++
T Consensus 67 vLL~GppGtGKTtLaraIa~~~~~---~~i~i~g~~-~~~~-~~g----------------------~~~~~v~~lfq~a 119 (499)
T 2dhr_A 67 VLLVGPPGVGKTHLARAVAGEARV---PFITASGSD-FVEM-FVG----------------------VGAARVRDLFETA 119 (499)
T ss_dssp EEEECSSSSSHHHHHHHHHHHTTC---CEEEEEGGG-GTSS-CTT----------------------HHHHHHHHHTTTS
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC---CEEEEehhH-HHHh-hhh----------------------hHHHHHHHHHHHH
Confidence 889999999999999999987642 234443111 1000 000 01111222222
Q ss_pred --CCeEEEEEcCCCCh------------H----HHHHHhcCCCC--CCCCCEEEEEeCChhhhh-hc----CcCcEEEcC
Q 003802 96 --RKRVLVILDDVDQL------------E----QLQALVGNHDW--FGFGSRIIITSRDEHVLK-SH----GVTNTYKVR 150 (794)
Q Consensus 96 --~~r~LlVlDd~~~~------------~----~~~~l~~~~~~--~~~gs~IlvTtR~~~v~~-~~----~~~~~~~l~ 150 (794)
..+.++++|+++.. + ....+...+.. ...+..|+.||....... .+ .....+.+.
T Consensus 120 ~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~ 199 (499)
T 2dhr_A 120 KRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAID 199 (499)
T ss_dssp SSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECC
T ss_pred HhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEecCChhhcCcccccccccceEEecC
Confidence 24579999998432 1 12333322211 123345555666554322 11 123478888
Q ss_pred CCChHhHHHHHHhhc
Q 003802 151 GLDYVEALQLFHLKV 165 (794)
Q Consensus 151 ~L~~~ea~~lf~~~~ 165 (794)
..+.++-.++++.++
T Consensus 200 ~Pd~~~R~~IL~~~~ 214 (499)
T 2dhr_A 200 APDVKGREQILRIHA 214 (499)
T ss_dssp CCCHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHH
Confidence 888888888887665
No 257
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.93 E-value=0.0087 Score=61.49 Aligned_cols=37 Identities=24% Similarity=0.302 Sum_probs=29.5
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEE
Q 003802 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (794)
Q Consensus 14 ~~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~ 50 (794)
.-+++.|.|.+|+||||||.+++......-..++|++
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid 98 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 98 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 3468999999999999999999886544334678887
No 258
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.92 E-value=0.031 Score=64.45 Aligned_cols=29 Identities=31% Similarity=0.283 Sum_probs=24.2
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHHHhhcc
Q 003802 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQ 42 (794)
Q Consensus 14 ~~~vi~i~G~~GvGKTtLa~~v~~~~~~~ 42 (794)
....|.|+|++|+||||||+.++......
T Consensus 237 ~~~~vLL~Gp~GtGKTtLarala~~l~~~ 265 (806)
T 1ypw_A 237 PPRGILLYGPPGTGKTLIARAVANETGAF 265 (806)
T ss_dssp CCCEEEECSCTTSSHHHHHHHHHHTTTCE
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHcCCc
Confidence 34578899999999999999999876443
No 259
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.91 E-value=0.0026 Score=58.69 Aligned_cols=61 Identities=11% Similarity=0.071 Sum_probs=27.8
Q ss_pred CCCCccEEEecCCCCCCC----CCccccCCCCCcEEEccCc---cCc-----ccCcccccCCCCCEEEcCCCC
Q 003802 492 LMKSLKILCLCGCLKLEK----LPQDLGEVECLEELDVGGT---AIR-----QIPPSIVQLVNLKIFSLHGCK 552 (794)
Q Consensus 492 ~l~~L~~L~L~~~~~~~~----~~~~~~~l~~L~~L~l~~~---~l~-----~l~~~l~~l~~L~~L~l~~~~ 552 (794)
.-+.|++|+|++|.+... +-+.+..-+.|++|+|+++ .+. .+...+..-+.|+.|+++.|.
T Consensus 96 ~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 96 TSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred cCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 334455555555544321 1222333444555555543 222 122334445566666665543
No 260
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.90 E-value=0.016 Score=59.02 Aligned_cols=36 Identities=25% Similarity=0.384 Sum_probs=26.7
Q ss_pred hhHhHhcCCCCeEEEEEEccCCCcHHHHHHHHHHHh
Q 003802 4 MNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTL 39 (794)
Q Consensus 4 l~~~l~~~~~~~~vi~i~G~~GvGKTtLa~~v~~~~ 39 (794)
+..++..+-+.-.++.|+|++|+|||++|.+++...
T Consensus 87 LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~~ 122 (322)
T 2i1q_A 87 LDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNL 122 (322)
T ss_dssp HHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred HHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 444443332345799999999999999999998753
No 261
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.86 E-value=0.011 Score=60.80 Aligned_cols=47 Identities=28% Similarity=0.289 Sum_probs=33.0
Q ss_pred hhHhHh-cCCCCeEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEE
Q 003802 4 MNGYLE-AGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (794)
Q Consensus 4 l~~~l~-~~~~~~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~ 50 (794)
+..++. .+-+.-+++.|+|++|+||||||.+++......=..++|++
T Consensus 49 LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~ 96 (349)
T 2zr9_A 49 LDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFID 96 (349)
T ss_dssp HHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 444444 23233468999999999999999999875543334577876
No 262
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.83 E-value=0.0067 Score=57.44 Aligned_cols=37 Identities=24% Similarity=0.371 Sum_probs=27.9
Q ss_pred hhHhHhcCCCCeEEEEEEccCCCcHHHHHHHHHHHhh
Q 003802 4 MNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLK 40 (794)
Q Consensus 4 l~~~l~~~~~~~~vi~i~G~~GvGKTtLa~~v~~~~~ 40 (794)
|.+.+........+|+|.|+.|+|||||++.++..+.
T Consensus 11 ~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 11 VLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp HHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3343333334568999999999999999999988654
No 263
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.81 E-value=0.0032 Score=57.93 Aligned_cols=29 Identities=45% Similarity=0.616 Sum_probs=24.1
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhhcccc
Q 003802 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFE 44 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~~~~~~f~ 44 (794)
|.|+|+||+|+|||||++++..+..+.|.
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~~~ 30 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSFG 30 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTTEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCCeE
Confidence 45889999999999999999887655554
No 264
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.81 E-value=0.041 Score=55.60 Aligned_cols=37 Identities=22% Similarity=0.192 Sum_probs=28.4
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEE
Q 003802 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (794)
Q Consensus 14 ~~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~ 50 (794)
..++|+|+|++|+||||++..++..++..-..+.++.
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid 140 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAA 140 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 4689999999999999999999986654433344443
No 265
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.81 E-value=0.019 Score=58.87 Aligned_cols=110 Identities=13% Similarity=0.118 Sum_probs=63.8
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhhccccceEEEEechhhhcccChHHHHHHHHHHHhccccccccchhhhHHHHHHHhc
Q 003802 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWRLC 95 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~ 95 (794)
.+|+|+|+.|+||||+.+.+...+.......++... .... ..... . .. .........+.......+...+.
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~e-d~~e--~~~~~----~-~~-~v~q~~~~~~~~~~~~~La~aL~ 194 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIE-DPIE--FVHES----K-KC-LVNQREVHRDTLGFSEALRSALR 194 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEE-SSCC--SCCCC----S-SS-EEEEEEBTTTBSCHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEcc-CcHH--hhhhc----c-cc-ceeeeeeccccCCHHHHHHHHhh
Confidence 499999999999999999998865443233333211 0000 00000 0 00 00000000112234557888888
Q ss_pred CCeEEEEEcCCCChHHHHHHhcCCCCCCCCCEEEEEeCChhh
Q 003802 96 RKRVLVILDDVDQLEQLQALVGNHDWFGFGSRIIITSRDEHV 137 (794)
Q Consensus 96 ~~r~LlVlDd~~~~~~~~~l~~~~~~~~~gs~IlvTtR~~~v 137 (794)
..+=++++|+..+.+.++.+.... ..|..|++|+-....
T Consensus 195 ~~PdvillDEp~d~e~~~~~~~~~---~~G~~vl~t~H~~~~ 233 (356)
T 3jvv_A 195 EDPDIILVGEMRDLETIRLALTAA---ETGHLVFGTLHTTSA 233 (356)
T ss_dssp SCCSEEEESCCCSHHHHHHHHHHH---HTTCEEEEEESCSSH
T ss_pred hCcCEEecCCCCCHHHHHHHHHHH---hcCCEEEEEEccChH
Confidence 999999999999877766544432 246678888876543
No 266
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.81 E-value=0.0092 Score=69.01 Aligned_cols=26 Identities=31% Similarity=0.364 Sum_probs=23.0
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhh
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNTLK 40 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~~~ 40 (794)
...+.++|++|+|||++|+.+++...
T Consensus 488 ~~~~ll~G~~GtGKT~la~~la~~l~ 513 (758)
T 1r6b_X 488 VGSFLFAGPTGVGKTEVTVQLSKALG 513 (758)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCcHHHHHHHHHHHhc
Confidence 35789999999999999999999763
No 267
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.79 E-value=0.042 Score=51.53 Aligned_cols=23 Identities=35% Similarity=0.320 Sum_probs=20.9
Q ss_pred EEEEEccCCCcHHHHHHHHHHHh
Q 003802 17 FIGICGMGGIGKTTLAKVLYNTL 39 (794)
Q Consensus 17 vi~i~G~~GvGKTtLa~~v~~~~ 39 (794)
+|.|.|++|+||+|.|+.+++++
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57799999999999999999875
No 268
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.75 E-value=0.0052 Score=56.52 Aligned_cols=25 Identities=28% Similarity=0.432 Sum_probs=22.6
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhh
Q 003802 16 RFIGICGMGGIGKTTLAKVLYNTLK 40 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~~~~ 40 (794)
.+|.|.|++|+||||+|+.++++..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5789999999999999999998764
No 269
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.74 E-value=0.0059 Score=56.33 Aligned_cols=25 Identities=28% Similarity=0.153 Sum_probs=21.4
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhh
Q 003802 16 RFIGICGMGGIGKTTLAKVLYNTLK 40 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~~~~ 40 (794)
.++.|+|+.|+||||++.+++++..
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~ 28 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYK 28 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4788999999999999988877553
No 270
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.71 E-value=0.04 Score=55.76 Aligned_cols=61 Identities=16% Similarity=0.202 Sum_probs=38.5
Q ss_pred hhhHhHhcCCCCeEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEEechhhhcccChHHHHHHHHH
Q 003802 3 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLS 70 (794)
Q Consensus 3 ~l~~~l~~~~~~~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~ 70 (794)
.+.+++ .+-..-.++.|.|.+|+||||+|..++.....+-..++|++. .....++...+..
T Consensus 57 ~LD~~l-gGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~sl------E~s~~~l~~R~~~ 117 (315)
T 3bh0_A 57 ELDRMT-YGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL------EMGKKENIKRLIV 117 (315)
T ss_dssp HHHHHH-SSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEES------SSCHHHHHHHHHH
T ss_pred HHHhhc-CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEEC------CCCHHHHHHHHHH
Confidence 344444 333334689999999999999999998754332256777652 2344445555443
No 271
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.69 E-value=0.0056 Score=55.92 Aligned_cols=25 Identities=32% Similarity=0.220 Sum_probs=22.5
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhh
Q 003802 16 RFIGICGMGGIGKTTLAKVLYNTLK 40 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~~~~ 40 (794)
.+|+|.|+.|+||||+|+.++.+..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4789999999999999999998764
No 272
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.68 E-value=0.013 Score=54.29 Aligned_cols=28 Identities=32% Similarity=0.426 Sum_probs=24.4
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHHHhhc
Q 003802 14 DVRFIGICGMGGIGKTTLAKVLYNTLKD 41 (794)
Q Consensus 14 ~~~vi~i~G~~GvGKTtLa~~v~~~~~~ 41 (794)
...+|.|.|+.|+||||+++.++.....
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 3578999999999999999999987653
No 273
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.65 E-value=0.017 Score=49.66 Aligned_cols=33 Identities=21% Similarity=0.277 Sum_probs=15.5
Q ss_pred CceEEEcCCCCccccccc-ccccccCceeccCCC
Q 003802 401 KLFKLNLCNSRIKYLWKG-IKPLKELKFMNLSHS 433 (794)
Q Consensus 401 ~L~~L~L~~n~i~~l~~~-~~~l~~L~~L~L~~n 433 (794)
+|++|+|++|.|+.+|.. |..+++|++|+|++|
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence 344555555555544433 344444444444444
No 274
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=95.55 E-value=0.012 Score=59.37 Aligned_cols=38 Identities=21% Similarity=0.292 Sum_probs=28.9
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEE
Q 003802 13 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (794)
Q Consensus 13 ~~~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~ 50 (794)
++.+||+|+|.|||||||.|.-++..+...=..+.-++
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~~GkkVllID 83 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIG 83 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 35799999999999999999988886544433455555
No 275
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.55 E-value=0.04 Score=57.84 Aligned_cols=37 Identities=30% Similarity=0.192 Sum_probs=28.2
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEE
Q 003802 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (794)
Q Consensus 14 ~~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~ 50 (794)
..++|.++|++|+||||++..++..++..=..+..+.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~ 132 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVA 132 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 3689999999999999999999986654433344443
No 276
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.50 E-value=0.024 Score=58.27 Aligned_cols=49 Identities=20% Similarity=0.295 Sum_probs=33.8
Q ss_pred hhhHhHhcCCCCeEEEEEEccCCCcHHHHHHHHHHHhhcc--c---c-ceEEEEe
Q 003802 3 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ--F---E-ASSFLAN 51 (794)
Q Consensus 3 ~l~~~l~~~~~~~~vi~i~G~~GvGKTtLa~~v~~~~~~~--f---~-~~~~~~~ 51 (794)
.+.++|..+-+.-.++.|+|+.|+|||||++.++..+... . . .++|++.
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~ 173 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDT 173 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEES
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeC
Confidence 3444554433445899999999999999999998865211 1 2 3488863
No 277
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.45 E-value=0.0081 Score=56.40 Aligned_cols=26 Identities=38% Similarity=0.434 Sum_probs=23.3
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhh
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNTLK 40 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~~~ 40 (794)
..+|+|.|+.|+||||+|+.++....
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999998763
No 278
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.43 E-value=0.015 Score=54.07 Aligned_cols=26 Identities=23% Similarity=0.431 Sum_probs=23.4
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhhc
Q 003802 16 RFIGICGMGGIGKTTLAKVLYNTLKD 41 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~~~~~ 41 (794)
.+|+|.|+.|+||||+|+.+++++.+
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 27 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 57999999999999999999997754
No 279
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.39 E-value=0.019 Score=49.40 Aligned_cols=54 Identities=11% Similarity=0.081 Sum_probs=42.1
Q ss_pred EEEcCCCCcc--cccccccccccCceeccCCCcCccCCCC-CCCCCCCCEEeccccccc
Q 003802 404 KLNLCNSRIK--YLWKGIKPLKELKFMNLSHSCNLIRTPD-FTGVPNLERLNLEGCTRL 459 (794)
Q Consensus 404 ~L~L~~n~i~--~l~~~~~~l~~L~~L~L~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~ 459 (794)
+++.++++++ .+|..+. ++|++|+|++|.+....+. |..+++|++|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 6778888887 8886543 4688999999988777776 778888888888887653
No 280
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.37 E-value=0.0084 Score=55.49 Aligned_cols=26 Identities=31% Similarity=0.383 Sum_probs=22.9
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhh
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNTLK 40 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~~~ 40 (794)
.+.|.|.|+.|+||||+|+.++++..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35788999999999999999998763
No 281
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.36 E-value=0.017 Score=54.19 Aligned_cols=27 Identities=37% Similarity=0.426 Sum_probs=24.1
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHHHhh
Q 003802 14 DVRFIGICGMGGIGKTTLAKVLYNTLK 40 (794)
Q Consensus 14 ~~~vi~i~G~~GvGKTtLa~~v~~~~~ 40 (794)
...+|+|.|+.|+||||+|+.++....
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 357999999999999999999998765
No 282
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.32 E-value=0.0076 Score=55.50 Aligned_cols=25 Identities=16% Similarity=0.386 Sum_probs=22.5
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhh
Q 003802 16 RFIGICGMGGIGKTTLAKVLYNTLK 40 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~~~~ 40 (794)
++++|+|+.|+|||||++.+.....
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 5899999999999999999988654
No 283
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.30 E-value=0.016 Score=52.16 Aligned_cols=34 Identities=18% Similarity=0.244 Sum_probs=26.8
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHHHhhcc-ccceE
Q 003802 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQ-FEASS 47 (794)
Q Consensus 14 ~~~vi~i~G~~GvGKTtLa~~v~~~~~~~-f~~~~ 47 (794)
..+++.|+|..|+||||++.++...++.+ +...+
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ 37 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGT 37 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeE
Confidence 46799999999999999999999876544 44433
No 284
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.28 E-value=0.023 Score=53.32 Aligned_cols=38 Identities=34% Similarity=0.323 Sum_probs=28.8
Q ss_pred hhhHhHhcC-CCCeEEEEEEccCCCcHHHHHHHHHHHhh
Q 003802 3 KMNGYLEAG-LDDVRFIGICGMGGIGKTTLAKVLYNTLK 40 (794)
Q Consensus 3 ~l~~~l~~~-~~~~~vi~i~G~~GvGKTtLa~~v~~~~~ 40 (794)
++.+.+... .....+|+|.|+.|+||||+++.+...+.
T Consensus 9 ~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~ 47 (201)
T 1rz3_A 9 FLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLR 47 (201)
T ss_dssp HHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 444444432 34568999999999999999999988654
No 285
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.27 E-value=0.11 Score=48.44 Aligned_cols=25 Identities=32% Similarity=0.504 Sum_probs=22.7
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHh
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNTL 39 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~~ 39 (794)
..+|+|.|+.|+||||+++.++...
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999999876
No 286
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.22 E-value=0.087 Score=55.59 Aligned_cols=37 Identities=22% Similarity=0.270 Sum_probs=28.8
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHHHhhcc-ccceEEEE
Q 003802 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQ-FEASSFLA 50 (794)
Q Consensus 14 ~~~vi~i~G~~GvGKTtLa~~v~~~~~~~-f~~~~~~~ 50 (794)
..++|.++|.+|+||||++..++..++.. =..+..++
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd 136 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVS 136 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEe
Confidence 47899999999999999999999876654 23344444
No 287
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.18 E-value=0.045 Score=54.62 Aligned_cols=36 Identities=28% Similarity=0.221 Sum_probs=28.0
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEE
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~ 50 (794)
..+|+++|.+|+||||++..++......-..+.+++
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~ 133 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVG 133 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 679999999999999999999986654433445554
No 288
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.15 E-value=0.012 Score=54.13 Aligned_cols=22 Identities=32% Similarity=0.422 Sum_probs=20.8
Q ss_pred EEEEEEccCCCcHHHHHHHHHH
Q 003802 16 RFIGICGMGGIGKTTLAKVLYN 37 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~ 37 (794)
.+|.|.|++|+||||+|+++++
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5899999999999999999988
No 289
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.10 E-value=0.012 Score=54.20 Aligned_cols=38 Identities=13% Similarity=0.364 Sum_probs=28.2
Q ss_pred hhhHhHhcCCCCeEEEEEEccCCCcHHHHHHHHHHHhhc
Q 003802 3 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKD 41 (794)
Q Consensus 3 ~l~~~l~~~~~~~~vi~i~G~~GvGKTtLa~~v~~~~~~ 41 (794)
.+..++.. -+..+.+.|+|++|+|||++|..+++.+++
T Consensus 47 ~l~~~~~~-iPkkn~ili~GPPGtGKTt~a~ala~~l~g 84 (212)
T 1tue_A 47 ALKSFLKG-TPKKNCLVFCGPANTGKSYFGMSFIHFIQG 84 (212)
T ss_dssp HHHHHHHT-CTTCSEEEEESCGGGCHHHHHHHHHHHHTC
T ss_pred HHHHHHhc-CCcccEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 44555543 233346899999999999999999997754
No 290
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.08 E-value=0.014 Score=66.30 Aligned_cols=27 Identities=33% Similarity=0.353 Sum_probs=23.2
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhhc
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNTLKD 41 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~~~~ 41 (794)
.+-|.++|++|.|||.+|+.+++....
T Consensus 511 ~~gvLl~GPPGtGKT~lAkaiA~e~~~ 537 (806)
T 3cf2_A 511 SKGVLFYGPPGCGKTLLAKAIANECQA 537 (806)
T ss_dssp CSCCEEESSTTSSHHHHHHHHHHTTTC
T ss_pred CceEEEecCCCCCchHHHHHHHHHhCC
Confidence 455789999999999999999997643
No 291
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.08 E-value=0.034 Score=58.39 Aligned_cols=36 Identities=19% Similarity=0.219 Sum_probs=27.8
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHHHhhccccceEEE
Q 003802 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFL 49 (794)
Q Consensus 14 ~~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~ 49 (794)
...+|.++|.+|+||||++..++..++.+-..+..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv 134 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVV 134 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 368999999999999999999998665543333333
No 292
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.05 E-value=0.012 Score=53.93 Aligned_cols=22 Identities=45% Similarity=0.687 Sum_probs=19.7
Q ss_pred EEEEEEccCCCcHHHHHHHHHHH
Q 003802 16 RFIGICGMGGIGKTTLAKVLYNT 38 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~~ 38 (794)
.+|+|.|+.|+||||+|+.+ ..
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~ 23 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KE 23 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HH
T ss_pred cEEEEECCCCCCHHHHHHHH-HH
Confidence 37999999999999999999 43
No 293
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.02 E-value=0.018 Score=53.64 Aligned_cols=26 Identities=35% Similarity=0.411 Sum_probs=23.2
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHHHh
Q 003802 14 DVRFIGICGMGGIGKTTLAKVLYNTL 39 (794)
Q Consensus 14 ~~~vi~i~G~~GvGKTtLa~~v~~~~ 39 (794)
...+|.|.|+.|+||||+|+.++...
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 34789999999999999999999865
No 294
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.02 E-value=0.011 Score=54.68 Aligned_cols=28 Identities=46% Similarity=0.648 Sum_probs=23.9
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhhccc
Q 003802 16 RFIGICGMGGIGKTTLAKVLYNTLKDQF 43 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~~~~~~f 43 (794)
++++|.|+.|+|||||++.+.......|
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~~~~ 29 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCGGGE
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCccc
Confidence 5789999999999999999998665444
No 295
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.01 E-value=0.013 Score=53.16 Aligned_cols=26 Identities=35% Similarity=0.479 Sum_probs=23.0
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhh
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNTLK 40 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~~~ 40 (794)
..+|+|.|+.|+||||+|+.++++..
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhC
Confidence 56899999999999999999998754
No 296
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.01 E-value=0.011 Score=54.78 Aligned_cols=28 Identities=14% Similarity=0.401 Sum_probs=23.9
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHHHhhc
Q 003802 14 DVRFIGICGMGGIGKTTLAKVLYNTLKD 41 (794)
Q Consensus 14 ~~~vi~i~G~~GvGKTtLa~~v~~~~~~ 41 (794)
..++|+|+|+.|+|||||++.+......
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~~ 45 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNPE 45 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCTT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCCc
Confidence 3478999999999999999999986543
No 297
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.01 E-value=0.049 Score=56.77 Aligned_cols=48 Identities=17% Similarity=0.207 Sum_probs=31.3
Q ss_pred hhhHhHhcCCCCeEEEEEEccCCCcHHHHHHHHHHHhhc------cccceEEEE
Q 003802 3 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKD------QFEASSFLA 50 (794)
Q Consensus 3 ~l~~~l~~~~~~~~vi~i~G~~GvGKTtLa~~v~~~~~~------~f~~~~~~~ 50 (794)
.+.++|..+-..-.++.|+|++|+|||||+..++-.... .-..++|++
T Consensus 166 ~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid 219 (400)
T 3lda_A 166 NLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYID 219 (400)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEE
T ss_pred hHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEe
Confidence 344444333233469999999999999999988643211 223477876
No 298
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=94.97 E-value=0.049 Score=50.68 Aligned_cols=33 Identities=27% Similarity=0.376 Sum_probs=26.3
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhhccccceEEE
Q 003802 17 FIGICGMGGIGKTTLAKVLYNTLKDQFEASSFL 49 (794)
Q Consensus 17 vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~ 49 (794)
.|+|-|+.|+||||.++.+++.+++.-..+++.
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~t 34 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK 34 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 478999999999999999999876654444444
No 299
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.96 E-value=0.011 Score=55.80 Aligned_cols=27 Identities=22% Similarity=0.429 Sum_probs=23.6
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhhc
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNTLKD 41 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~~~~ 41 (794)
..+|+|+|+.|+||||+++.++.....
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 468999999999999999999986543
No 300
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=94.94 E-value=0.018 Score=56.03 Aligned_cols=48 Identities=19% Similarity=0.268 Sum_probs=32.7
Q ss_pred hhhHhHhcCCCCeEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEE
Q 003802 3 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (794)
Q Consensus 3 ~l~~~l~~~~~~~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~ 50 (794)
.+.+++..+-+.-.++.|.|++|+||||+|.+++......-..++|+.
T Consensus 11 ~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~ 58 (247)
T 2dr3_A 11 GVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVA 58 (247)
T ss_dssp THHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred hHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 344444433233468999999999999999988775443334567765
No 301
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=94.89 E-value=0.016 Score=56.65 Aligned_cols=29 Identities=21% Similarity=0.311 Sum_probs=24.1
Q ss_pred CCCeEEEEEEccCCCcHHHHHHHHHHHhh
Q 003802 12 LDDVRFIGICGMGGIGKTTLAKVLYNTLK 40 (794)
Q Consensus 12 ~~~~~vi~i~G~~GvGKTtLa~~v~~~~~ 40 (794)
.....+|+|.|+.|+||||+|+.++....
T Consensus 19 ~~~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 19 GGEPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 34567999999999999999999998654
No 302
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=94.88 E-value=0.016 Score=56.55 Aligned_cols=25 Identities=24% Similarity=0.118 Sum_probs=22.5
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhh
Q 003802 16 RFIGICGMGGIGKTTLAKVLYNTLK 40 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~~~~ 40 (794)
.+|+|.|+.|+||||+|+.++.+..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 5899999999999999999998654
No 303
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.85 E-value=0.013 Score=53.56 Aligned_cols=25 Identities=36% Similarity=0.472 Sum_probs=22.3
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhh
Q 003802 16 RFIGICGMGGIGKTTLAKVLYNTLK 40 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~~~~ 40 (794)
.+|+|+|+.|+||||+++.++....
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999998653
No 304
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=94.85 E-value=0.042 Score=55.92 Aligned_cols=26 Identities=19% Similarity=0.056 Sum_probs=22.7
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhhc
Q 003802 16 RFIGICGMGGIGKTTLAKVLYNTLKD 41 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~~~~~ 41 (794)
..++|+|++|+|||||++.+++.+.+
T Consensus 175 Qr~~IvG~sG~GKTtLl~~Iar~i~~ 200 (422)
T 3ice_A 175 QRGLIVAPPKAGKTMLLQNIAQSIAY 200 (422)
T ss_dssp CEEEEECCSSSSHHHHHHHHHHHHHH
T ss_pred cEEEEecCCCCChhHHHHHHHHHHhh
Confidence 47889999999999999999886544
No 305
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.85 E-value=0.012 Score=54.28 Aligned_cols=25 Identities=40% Similarity=0.469 Sum_probs=22.5
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHh
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNTL 39 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~~ 39 (794)
.++|.|.|+.|+||||+|+.+++..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 4678999999999999999999875
No 306
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.85 E-value=0.015 Score=54.07 Aligned_cols=24 Identities=33% Similarity=0.451 Sum_probs=21.7
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHH
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNT 38 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~ 38 (794)
-.+|+|.|+.|+||||+++.++..
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 368999999999999999999875
No 307
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.84 E-value=0.016 Score=53.38 Aligned_cols=86 Identities=15% Similarity=0.154 Sum_probs=60.6
Q ss_pred cCcccccccccccc-cccc----ccccccCCCCCccEEEecCCCCCC----CCCccccCCCCCcEEEccCccCc-----c
Q 003802 467 GTLKRLILLNLKDC-RNLV----SFPKNVCLMKSLKILCLCGCLKLE----KLPQDLGEVECLEELDVGGTAIR-----Q 532 (794)
Q Consensus 467 ~~l~~L~~L~l~~n-~~~~----~~~~~~~~l~~L~~L~L~~~~~~~----~~~~~~~~l~~L~~L~l~~~~l~-----~ 532 (794)
.+-+.|++|+|++| .+.. .+...+..-+.|+.|+|++|.+.. .+.+.+..-+.|++|+|++|.|. .
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 33456777777664 3321 244556667889999999988763 23344556788999999999998 3
Q ss_pred cCcccccCCCCCEEEcCCCC
Q 003802 533 IPPSIVQLVNLKIFSLHGCK 552 (794)
Q Consensus 533 l~~~l~~l~~L~~L~l~~~~ 552 (794)
+-..+..-+.|++|++++|.
T Consensus 118 la~aL~~N~tL~~L~L~n~~ 137 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADNQR 137 (197)
T ss_dssp HHHHTTTTCCCSEEECCCCS
T ss_pred HHHHHhhCCceeEEECCCCc
Confidence 44566777889999998764
No 308
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.84 E-value=0.017 Score=53.74 Aligned_cols=26 Identities=23% Similarity=0.565 Sum_probs=23.2
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhhc
Q 003802 16 RFIGICGMGGIGKTTLAKVLYNTLKD 41 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~~~~~ 41 (794)
.+|+|.|+.|+||||+|+.++++...
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 29 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRK 29 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 47999999999999999999997653
No 309
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=94.83 E-value=0.072 Score=53.18 Aligned_cols=27 Identities=30% Similarity=0.340 Sum_probs=23.8
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHHHhh
Q 003802 14 DVRFIGICGMGGIGKTTLAKVLYNTLK 40 (794)
Q Consensus 14 ~~~vi~i~G~~GvGKTtLa~~v~~~~~ 40 (794)
...+|+|+|++|+||||++..++..++
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~ 130 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISM 130 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 356999999999999999999998664
No 310
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=94.81 E-value=0.088 Score=53.31 Aligned_cols=51 Identities=16% Similarity=0.100 Sum_probs=34.4
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEEechhhhcccChHHHHHHHHHH
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSE 71 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 71 (794)
-.++.|.|.+|+||||+|..++..+...=..+.|++. .....++...++..
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSl------Ems~~ql~~Rlls~ 96 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSL------EMSAEQLALRALSD 96 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEES------SSCHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeC------CCCHHHHHHHHHHH
Confidence 3588999999999999999998865433234566542 33444555555443
No 311
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=94.81 E-value=0.062 Score=62.75 Aligned_cols=36 Identities=39% Similarity=0.349 Sum_probs=26.7
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEE
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~ 50 (794)
...+.|+|+.|+|||++|+.+++.....-...+.++
T Consensus 588 ~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~ 623 (854)
T 1qvr_A 588 IGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRID 623 (854)
T ss_dssp SEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEEC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEe
Confidence 358899999999999999999996643222334444
No 312
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=94.78 E-value=0.027 Score=56.07 Aligned_cols=26 Identities=23% Similarity=0.350 Sum_probs=23.4
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHHHh
Q 003802 14 DVRFIGICGMGGIGKTTLAKVLYNTL 39 (794)
Q Consensus 14 ~~~vi~i~G~~GvGKTtLa~~v~~~~ 39 (794)
...+|.|.|++|+||||+|+.+..+.
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999998865
No 313
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.77 E-value=0.016 Score=54.49 Aligned_cols=24 Identities=33% Similarity=0.459 Sum_probs=22.0
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhh
Q 003802 17 FIGICGMGGIGKTTLAKVLYNTLK 40 (794)
Q Consensus 17 vi~i~G~~GvGKTtLa~~v~~~~~ 40 (794)
+|+|.|+.|+||||+|+.+++.+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 689999999999999999998765
No 314
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=94.76 E-value=0.018 Score=55.85 Aligned_cols=27 Identities=22% Similarity=0.062 Sum_probs=23.7
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHHHHh
Q 003802 13 DDVRFIGICGMGGIGKTTLAKVLYNTL 39 (794)
Q Consensus 13 ~~~~vi~i~G~~GvGKTtLa~~v~~~~ 39 (794)
....+|+|.|+.|+||||+|+.+++++
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 345789999999999999999999865
No 315
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.76 E-value=0.03 Score=52.96 Aligned_cols=28 Identities=25% Similarity=0.369 Sum_probs=24.4
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhhccc
Q 003802 16 RFIGICGMGGIGKTTLAKVLYNTLKDQF 43 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~~~~~~f 43 (794)
.+|+|.|+.|+||||+|+.+++......
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g 32 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELKR 32 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTTS
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhcC
Confidence 5899999999999999999999765443
No 316
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.75 E-value=0.015 Score=54.64 Aligned_cols=25 Identities=20% Similarity=0.371 Sum_probs=22.7
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHh
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNTL 39 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~~ 39 (794)
..+|+|.|+.|+||||+|+.++...
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999999876
No 317
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.74 E-value=0.036 Score=56.16 Aligned_cols=28 Identities=39% Similarity=0.406 Sum_probs=24.4
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHHHhhc
Q 003802 14 DVRFIGICGMGGIGKTTLAKVLYNTLKD 41 (794)
Q Consensus 14 ~~~vi~i~G~~GvGKTtLa~~v~~~~~~ 41 (794)
...+|+|+|+.|+||||+++.++...+.
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~ 155 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKN 155 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4689999999999999999999886543
No 318
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.73 E-value=0.022 Score=52.03 Aligned_cols=25 Identities=24% Similarity=0.401 Sum_probs=22.7
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHh
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNTL 39 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~~ 39 (794)
..+|+|.|+.|+||||+++.++...
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 4789999999999999999998865
No 319
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.70 E-value=0.015 Score=53.11 Aligned_cols=25 Identities=40% Similarity=0.531 Sum_probs=22.2
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhh
Q 003802 16 RFIGICGMGGIGKTTLAKVLYNTLK 40 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~~~~ 40 (794)
++|.|.|+.|+||||+|+.++....
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 3689999999999999999998754
No 320
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=94.69 E-value=0.025 Score=53.37 Aligned_cols=28 Identities=29% Similarity=0.348 Sum_probs=24.9
Q ss_pred CCCeEEEEEEccCCCcHHHHHHHHHHHh
Q 003802 12 LDDVRFIGICGMGGIGKTTLAKVLYNTL 39 (794)
Q Consensus 12 ~~~~~vi~i~G~~GvGKTtLa~~v~~~~ 39 (794)
....+||.|.|++|+||||.|+.+++++
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3457999999999999999999999875
No 321
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=94.69 E-value=0.022 Score=53.55 Aligned_cols=27 Identities=33% Similarity=0.370 Sum_probs=24.0
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHHHHh
Q 003802 13 DDVRFIGICGMGGIGKTTLAKVLYNTL 39 (794)
Q Consensus 13 ~~~~vi~i~G~~GvGKTtLa~~v~~~~ 39 (794)
....+|+|.|+.|+||||+|+.+++..
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 456899999999999999999999864
No 322
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=94.68 E-value=0.12 Score=55.16 Aligned_cols=61 Identities=11% Similarity=0.080 Sum_probs=38.4
Q ss_pred hhHhHhcCCCCeEEEEEEccCCCcHHHHHHHHHHHhhcc-ccceEEEEechhhhcccChHHHHHHHHHH
Q 003802 4 MNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ-FEASSFLANVREVSVTRGLVPLQEQLLSE 71 (794)
Q Consensus 4 l~~~l~~~~~~~~vi~i~G~~GvGKTtLa~~v~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 71 (794)
+.+++ .+-..-.++.|.|.+|+|||++|..++..+... =..++|++. .....++...+...
T Consensus 190 LD~~l-gGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl------E~~~~~l~~R~~~~ 251 (444)
T 2q6t_A 190 LDQLI-GTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL------EMPAAQLTLRMMCS 251 (444)
T ss_dssp HHHHH-CCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES------SSCHHHHHHHHHHH
T ss_pred hhhhc-CCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC------CCCHHHHHHHHHHH
Confidence 44444 333334689999999999999999998865432 235677652 23344555555443
No 323
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.60 E-value=0.018 Score=53.80 Aligned_cols=25 Identities=24% Similarity=0.290 Sum_probs=22.6
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHh
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNTL 39 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~~ 39 (794)
..+|+|.|+.|+||||+|+.+++..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999999865
No 324
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=94.59 E-value=0.072 Score=55.18 Aligned_cols=108 Identities=12% Similarity=0.120 Sum_probs=59.2
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEEechhhhcccChHHHHHHHHHHHh-ccccccccchhhhHHHHHHH
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVL-MERDLIIWDVHKGINLIRWR 93 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~l~~~ 93 (794)
-.+|+|+|+.|+||||+++.+...+.......+.+... ... .... .... .....-..+.......+...
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~-~~e--~~~~-------~~~~~v~Q~~~g~~~~~~~~~l~~~ 205 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIED-PIE--YVFK-------HKKSIVNQREVGEDTKSFADALRAA 205 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEES-SCC--SCCC-------CSSSEEEEEEBTTTBSCSHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecc-cHh--hhhc-------cCceEEEeeecCCCHHHHHHHHHHH
Confidence 46899999999999999999988654432344433211 000 0000 0000 00000000112334567777
Q ss_pred hcCCeEEEEEcCCCChHHHHHHhcCCCCCCCCCEEEEEeCCh
Q 003802 94 LCRKRVLVILDDVDQLEQLQALVGNHDWFGFGSRIIITSRDE 135 (794)
Q Consensus 94 l~~~r~LlVlDd~~~~~~~~~l~~~~~~~~~gs~IlvTtR~~ 135 (794)
+...+=++++|.+.+.+......... ..|..|+.|+-..
T Consensus 206 L~~~pd~illdE~~d~e~~~~~l~~~---~~g~~vi~t~H~~ 244 (372)
T 2ewv_A 206 LREDPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTN 244 (372)
T ss_dssp TTSCCSEEEESCCCSHHHHHHHHHHH---TTTCEEEECCCCC
T ss_pred hhhCcCEEEECCCCCHHHHHHHHHHH---hcCCEEEEEECcc
Confidence 77778899999998766544433321 3466677776643
No 325
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.58 E-value=0.028 Score=53.34 Aligned_cols=28 Identities=25% Similarity=0.293 Sum_probs=24.4
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhhcc
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQ 42 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~~~~~ 42 (794)
..+|+|.|+.|+||||+|+.+++.+...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~ 36 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCAA 36 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 3589999999999999999999976544
No 326
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.46 E-value=0.023 Score=52.68 Aligned_cols=31 Identities=29% Similarity=0.524 Sum_probs=24.3
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhhccccceEEEE
Q 003802 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~ 50 (794)
.+++|.|+.|+||||+++.++.. ....+++.
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~----~~g~~~i~ 33 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQ----LDNSAYIE 33 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH----SSSEEEEE
T ss_pred eEEEEECCCCCcHHHHHHHHhcc----cCCeEEEc
Confidence 58899999999999999999862 23345554
No 327
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=94.45 E-value=0.017 Score=53.42 Aligned_cols=25 Identities=28% Similarity=0.415 Sum_probs=22.2
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhh
Q 003802 16 RFIGICGMGGIGKTTLAKVLYNTLK 40 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~~~~ 40 (794)
.+|.|.|+.|+||||+|+.++.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 3689999999999999999998753
No 328
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=94.45 E-value=0.054 Score=55.93 Aligned_cols=34 Identities=29% Similarity=0.432 Sum_probs=27.0
Q ss_pred HhcCCCCeEEEEEEccCCCcHHHHHHHHHHHhhc
Q 003802 8 LEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKD 41 (794)
Q Consensus 8 l~~~~~~~~vi~i~G~~GvGKTtLa~~v~~~~~~ 41 (794)
+.....+..+|+|+|.+|+||||++..++.....
T Consensus 72 ~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~ 105 (355)
T 3p32_A 72 LLPDSGNAHRVGITGVPGVGKSTAIEALGMHLIE 105 (355)
T ss_dssp HGGGCCCSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred hHhhcCCceEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3333456789999999999999999999886543
No 329
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.44 E-value=0.14 Score=53.97 Aligned_cols=33 Identities=33% Similarity=0.536 Sum_probs=25.2
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhhccc-cceEEE
Q 003802 17 FIGICGMGGIGKTTLAKVLYNTLKDQF-EASSFL 49 (794)
Q Consensus 17 vi~i~G~~GvGKTtLa~~v~~~~~~~f-~~~~~~ 49 (794)
.++|+|.+|+|||||+..+.......+ +..+++
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~V~~ 186 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHNIAQEHGGISVFA 186 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHHHHHTCCCEEEE
T ss_pred EEEEECCCCCCccHHHHHHHhhhhhccCcEEEEe
Confidence 578999999999999999988655433 334444
No 330
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.43 E-value=0.078 Score=55.54 Aligned_cols=37 Identities=30% Similarity=0.259 Sum_probs=28.1
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEE
Q 003802 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (794)
Q Consensus 14 ~~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~ 50 (794)
...+|.|+|++|+||||++..++..++..-..+..+.
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd 133 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVA 133 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEee
Confidence 3579999999999999999999987655433334443
No 331
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=94.42 E-value=0.13 Score=54.65 Aligned_cols=46 Identities=17% Similarity=0.251 Sum_probs=31.4
Q ss_pred hhHhHhcCCCCeEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEE
Q 003802 4 MNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (794)
Q Consensus 4 l~~~l~~~~~~~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~ 50 (794)
+.+++ .+-..-.++.|.|.+|+||||+|..++..+...=..++|++
T Consensus 187 LD~~l-gGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fS 232 (444)
T 3bgw_A 187 LDRMT-YGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS 232 (444)
T ss_dssp HHHHH-SSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred HHhhc-CCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEE
Confidence 34444 23333468999999999999999999886543323466654
No 332
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=94.40 E-value=0.026 Score=52.59 Aligned_cols=25 Identities=20% Similarity=0.179 Sum_probs=22.5
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHh
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNTL 39 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~~ 39 (794)
..+|+|.|+.|+||||+|+.+++..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999998865
No 333
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.40 E-value=0.025 Score=53.06 Aligned_cols=26 Identities=38% Similarity=0.456 Sum_probs=23.3
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHHHH
Q 003802 13 DDVRFIGICGMGGIGKTTLAKVLYNT 38 (794)
Q Consensus 13 ~~~~vi~i~G~~GvGKTtLa~~v~~~ 38 (794)
+...+|+|+|+.|+||||+|+.+++.
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 34679999999999999999999885
No 334
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=94.39 E-value=0.05 Score=54.47 Aligned_cols=35 Identities=31% Similarity=0.379 Sum_probs=26.9
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHHHhhccccceEEE
Q 003802 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFL 49 (794)
Q Consensus 14 ~~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~ 49 (794)
...+++|+|+.|+||||+++.++..++.. ...+++
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~-~g~V~l 133 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLKNE-GTKVLM 133 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHHHT-TCCEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHc-CCeEEE
Confidence 35799999999999999999999865432 233444
No 335
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=94.38 E-value=0.025 Score=52.13 Aligned_cols=25 Identities=32% Similarity=0.364 Sum_probs=22.5
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHHH
Q 003802 14 DVRFIGICGMGGIGKTTLAKVLYNT 38 (794)
Q Consensus 14 ~~~vi~i~G~~GvGKTtLa~~v~~~ 38 (794)
...+|+|+|+.|+||||+|+.++..
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3468999999999999999999886
No 336
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=94.38 E-value=0.018 Score=54.20 Aligned_cols=27 Identities=30% Similarity=0.573 Sum_probs=23.5
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHHHhh
Q 003802 14 DVRFIGICGMGGIGKTTLAKVLYNTLK 40 (794)
Q Consensus 14 ~~~vi~i~G~~GvGKTtLa~~v~~~~~ 40 (794)
..++|+|+|+.|+||||+++.+.....
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 346899999999999999999998764
No 337
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=94.36 E-value=0.018 Score=52.44 Aligned_cols=25 Identities=32% Similarity=0.364 Sum_probs=22.3
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhh
Q 003802 16 RFIGICGMGGIGKTTLAKVLYNTLK 40 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~~~~ 40 (794)
.+|.|.|+.|+||||+|+.+++...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999998753
No 338
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.34 E-value=0.023 Score=53.48 Aligned_cols=24 Identities=33% Similarity=0.504 Sum_probs=21.8
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHh
Q 003802 16 RFIGICGMGGIGKTTLAKVLYNTL 39 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~~~ 39 (794)
.+|+|.|+.|+|||||++.++...
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 589999999999999999998754
No 339
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=94.33 E-value=0.027 Score=50.97 Aligned_cols=24 Identities=29% Similarity=0.364 Sum_probs=21.7
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhh
Q 003802 17 FIGICGMGGIGKTTLAKVLYNTLK 40 (794)
Q Consensus 17 vi~i~G~~GvGKTtLa~~v~~~~~ 40 (794)
.|+|.|+.|+||||+|+.+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999998754
No 340
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=94.33 E-value=0.24 Score=47.55 Aligned_cols=22 Identities=32% Similarity=0.306 Sum_probs=18.1
Q ss_pred EEEEEEccCCCcHHHHHHHHHH
Q 003802 16 RFIGICGMGGIGKTTLAKVLYN 37 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~ 37 (794)
+.+.|.|+.|+||||++....-
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~~ 98 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFIL 98 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEeCCCCCcHHhHHHHHh
Confidence 5889999999999987765543
No 341
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.32 E-value=0.028 Score=51.97 Aligned_cols=25 Identities=32% Similarity=0.254 Sum_probs=22.4
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHh
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNTL 39 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~~ 39 (794)
..+|+|.|+.|+||||+|+.+++..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999999865
No 342
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=94.32 E-value=0.025 Score=55.52 Aligned_cols=26 Identities=35% Similarity=0.599 Sum_probs=23.3
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhh
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNTLK 40 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~~~ 40 (794)
..+|.|.|++|+||||+|+.++..+.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999998754
No 343
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=94.27 E-value=0.028 Score=52.25 Aligned_cols=26 Identities=19% Similarity=0.192 Sum_probs=23.2
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhh
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNTLK 40 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~~~ 40 (794)
..+|+|.|+.|+||||+|+.+++...
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 47899999999999999999998653
No 344
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=94.23 E-value=0.026 Score=52.77 Aligned_cols=25 Identities=32% Similarity=0.323 Sum_probs=22.8
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhh
Q 003802 16 RFIGICGMGGIGKTTLAKVLYNTLK 40 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~~~~ 40 (794)
.+|+|.|+.|+||||+|+.++++..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5899999999999999999998764
No 345
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=94.23 E-value=0.018 Score=53.12 Aligned_cols=26 Identities=38% Similarity=0.381 Sum_probs=18.9
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhh
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNTLK 40 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~~~ 40 (794)
..+|.|.|+.|+||||+|+.+++...
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45899999999999999999988654
No 346
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.22 E-value=0.032 Score=52.81 Aligned_cols=27 Identities=48% Similarity=0.516 Sum_probs=23.7
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHHHhh
Q 003802 14 DVRFIGICGMGGIGKTTLAKVLYNTLK 40 (794)
Q Consensus 14 ~~~vi~i~G~~GvGKTtLa~~v~~~~~ 40 (794)
...+|+|+|+.|+|||||++.++..+.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 347999999999999999999988654
No 347
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=94.20 E-value=0.029 Score=52.61 Aligned_cols=26 Identities=31% Similarity=0.204 Sum_probs=23.0
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhh
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNTLK 40 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~~~ 40 (794)
..+|+|.|+.|+||||+|+.+++...
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45899999999999999999998763
No 348
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=94.20 E-value=0.025 Score=51.67 Aligned_cols=24 Identities=46% Similarity=0.530 Sum_probs=21.2
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhh
Q 003802 17 FIGICGMGGIGKTTLAKVLYNTLK 40 (794)
Q Consensus 17 vi~i~G~~GvGKTtLa~~v~~~~~ 40 (794)
.++|+|+.|+|||||++.++....
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999999999999999988553
No 349
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=94.15 E-value=0.028 Score=53.86 Aligned_cols=24 Identities=42% Similarity=0.534 Sum_probs=21.9
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHh
Q 003802 16 RFIGICGMGGIGKTTLAKVLYNTL 39 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~~~ 39 (794)
.+|+|+|+.|+||||+|+.++..+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 489999999999999999998864
No 350
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=94.12 E-value=0.042 Score=55.01 Aligned_cols=36 Identities=22% Similarity=0.327 Sum_probs=27.3
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEE
Q 003802 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (794)
Q Consensus 14 ~~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~ 50 (794)
...+|+|+|++|+||||+++.++...+.. ...+++.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~-~g~V~l~ 136 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL-GKKVMFC 136 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTT-TCCEEEE
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc-CCEEEEE
Confidence 35699999999999999999999865433 3334443
No 351
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=94.12 E-value=0.069 Score=54.28 Aligned_cols=86 Identities=16% Similarity=0.190 Sum_probs=51.9
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhhccccceEEEEechhhhcccChHHHHHHHHHHHhcccccccc--chhhhHHHHHHH
Q 003802 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLIIW--DVHKGINLIRWR 93 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~~~~~~~~l~~~ 93 (794)
.+++|+|+.|.|||||++.++..+.. -...+.+......... .. ....... ..+.....+...
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~~-~~g~i~i~~~~e~~~~-~~-------------~~~i~~~~ggg~~~r~~la~a 236 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIPK-EERIISIEDTEEIVFK-HH-------------KNYTQLFFGGNITSADCLKSC 236 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSCT-TSCEEEEESSCCCCCS-SC-------------SSEEEEECBTTBCHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcC-CCcEEEECCeeccccc-cc-------------hhEEEEEeCCChhHHHHHHHH
Confidence 48999999999999999999875433 2455666532211100 00 0000000 123345566777
Q ss_pred hcCCeEEEEEcCCCChHHHHHHh
Q 003802 94 LCRKRVLVILDDVDQLEQLQALV 116 (794)
Q Consensus 94 l~~~r~LlVlDd~~~~~~~~~l~ 116 (794)
+..++=++++|++...+.++.+.
T Consensus 237 L~~~p~ilildE~~~~e~~~~l~ 259 (330)
T 2pt7_A 237 LRMRPDRIILGELRSSEAYDFYN 259 (330)
T ss_dssp TTSCCSEEEECCCCSTHHHHHHH
T ss_pred hhhCCCEEEEcCCChHHHHHHHH
Confidence 77888899999998766555443
No 352
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.11 E-value=0.066 Score=49.87 Aligned_cols=25 Identities=36% Similarity=0.573 Sum_probs=22.3
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhhc
Q 003802 17 FIGICGMGGIGKTTLAKVLYNTLKD 41 (794)
Q Consensus 17 vi~i~G~~GvGKTtLa~~v~~~~~~ 41 (794)
.|+|.|+.|+||||+|+.+++.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEK 26 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999987643
No 353
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=94.11 E-value=0.026 Score=53.86 Aligned_cols=26 Identities=27% Similarity=0.226 Sum_probs=22.9
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhh
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNTLK 40 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~~~ 40 (794)
...|+|.|+.|+||||+|+.+++.+.
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 35789999999999999999998763
No 354
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=94.10 E-value=0.062 Score=54.98 Aligned_cols=28 Identities=39% Similarity=0.409 Sum_probs=24.4
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHHHhhc
Q 003802 14 DVRFIGICGMGGIGKTTLAKVLYNTLKD 41 (794)
Q Consensus 14 ~~~vi~i~G~~GvGKTtLa~~v~~~~~~ 41 (794)
...+|+|+|+.|+||||+++.++..++.
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~ 183 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKN 183 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhccc
Confidence 3579999999999999999999986553
No 355
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.10 E-value=0.021 Score=53.45 Aligned_cols=25 Identities=36% Similarity=0.534 Sum_probs=22.1
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhh
Q 003802 16 RFIGICGMGGIGKTTLAKVLYNTLK 40 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~~~~ 40 (794)
++++|+|+.|+|||||++.+.....
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5789999999999999999987553
No 356
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.07 E-value=0.057 Score=51.64 Aligned_cols=28 Identities=39% Similarity=0.456 Sum_probs=24.0
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHHHhhc
Q 003802 14 DVRFIGICGMGGIGKTTLAKVLYNTLKD 41 (794)
Q Consensus 14 ~~~vi~i~G~~GvGKTtLa~~v~~~~~~ 41 (794)
...+|+|+|.+|+|||||+..++.....
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~ 64 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKD 64 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhcc
Confidence 4688999999999999999999886433
No 357
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.07 E-value=0.05 Score=48.47 Aligned_cols=27 Identities=26% Similarity=0.391 Sum_probs=23.6
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHHHHh
Q 003802 13 DDVRFIGICGMGGIGKTTLAKVLYNTL 39 (794)
Q Consensus 13 ~~~~vi~i~G~~GvGKTtLa~~v~~~~ 39 (794)
..-.+++|.|+.|+|||||++.++...
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 344699999999999999999999865
No 358
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.04 E-value=0.028 Score=52.82 Aligned_cols=22 Identities=36% Similarity=0.607 Sum_probs=20.5
Q ss_pred EEEEEEccCCCcHHHHHHHHHH
Q 003802 16 RFIGICGMGGIGKTTLAKVLYN 37 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~ 37 (794)
.+|+|+|+.|+||||+++.++.
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3799999999999999999987
No 359
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=94.02 E-value=0.023 Score=54.31 Aligned_cols=26 Identities=19% Similarity=0.198 Sum_probs=23.1
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhh
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNTLK 40 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~~~ 40 (794)
...|+|.|+.|+||||+|+.+++++.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45789999999999999999998764
No 360
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.01 E-value=0.029 Score=52.82 Aligned_cols=24 Identities=29% Similarity=0.526 Sum_probs=22.0
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHh
Q 003802 16 RFIGICGMGGIGKTTLAKVLYNTL 39 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~~~ 39 (794)
.+|+|+|+.|+||||+++.+....
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 589999999999999999998865
No 361
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.00 E-value=0.051 Score=67.43 Aligned_cols=96 Identities=16% Similarity=0.140 Sum_probs=53.8
Q ss_pred hhhHhHh-cCCCCeEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEEechhhhcccChHHHHHHHHHHHhcccc----
Q 003802 3 KMNGYLE-AGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERD---- 77 (794)
Q Consensus 3 ~l~~~l~-~~~~~~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---- 77 (794)
++..++. -+-+..++|.|+|++|+|||+||.+++.....+=..++|++ +...... .. ++..+...+
T Consensus 1414 ~LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~----~e~~~~~--l~---a~~~G~dl~~l~v 1484 (2050)
T 3cmu_A 1414 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID----AEHALDP--IY---ARKLGVDIDNLLC 1484 (2050)
T ss_dssp HHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEC----TTSCCCH--HH---HHHTTCCTTTCEE
T ss_pred HHHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEE----cccccCH--HH---HHHcCCCchhcee
Confidence 3445554 22234578999999999999999999886554434567775 2222221 11 222221100
Q ss_pred ccccchhhhHHHHHHHhc-CCeEEEEEcCCC
Q 003802 78 LIIWDVHKGINLIRWRLC-RKRVLVILDDVD 107 (794)
Q Consensus 78 ~~~~~~~~~~~~l~~~l~-~~r~LlVlDd~~ 107 (794)
..+...+...+.+++..+ .+.-+||+|.+.
T Consensus 1485 ~~~~~~E~~l~~~~~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1485 SQPDTGEQALEICDALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp ECCSSHHHHHHHHHHHHHHTCCSEEEESCGG
T ss_pred ecCChHHHHHHHHHHHHhcCCCCEEEEcChh
Confidence 011222344444444433 567899999983
No 362
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=93.98 E-value=0.052 Score=54.87 Aligned_cols=38 Identities=21% Similarity=0.292 Sum_probs=29.1
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEE
Q 003802 13 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (794)
Q Consensus 13 ~~~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~ 50 (794)
...++|+|+|.||+||||+|..++..+...=..+..++
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~La~~G~~VlliD 76 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIG 76 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEe
Confidence 35789999999999999999999986654433455555
No 363
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=93.97 E-value=0.033 Score=52.73 Aligned_cols=27 Identities=37% Similarity=0.512 Sum_probs=23.9
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhhc
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNTLKD 41 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~~~~ 41 (794)
..+|+|.|+.|+||||+|+.+++....
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~ 36 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKN 36 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 468999999999999999999987654
No 364
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=93.97 E-value=0.033 Score=52.49 Aligned_cols=26 Identities=50% Similarity=0.612 Sum_probs=22.8
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHHHh
Q 003802 14 DVRFIGICGMGGIGKTTLAKVLYNTL 39 (794)
Q Consensus 14 ~~~vi~i~G~~GvGKTtLa~~v~~~~ 39 (794)
...+|+|+|+.|+||||+|+.+...+
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 45799999999999999999998753
No 365
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=93.94 E-value=0.034 Score=51.72 Aligned_cols=24 Identities=54% Similarity=0.744 Sum_probs=22.0
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhh
Q 003802 17 FIGICGMGGIGKTTLAKVLYNTLK 40 (794)
Q Consensus 17 vi~i~G~~GvGKTtLa~~v~~~~~ 40 (794)
+|+|.|+.|+||||+|+.+++.+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999999764
No 366
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=93.92 E-value=0.21 Score=53.49 Aligned_cols=36 Identities=17% Similarity=0.248 Sum_probs=27.9
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhhcc-ccceEEEE
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQ-FEASSFLA 50 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~~~~~-f~~~~~~~ 50 (794)
-.++.|.|.+|+||||+|..++..+... -..++|++
T Consensus 203 G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s 239 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFS 239 (454)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 4689999999999999999998865432 23566765
No 367
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=93.92 E-value=0.033 Score=54.21 Aligned_cols=26 Identities=23% Similarity=0.231 Sum_probs=23.2
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhh
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNTLK 40 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~~~ 40 (794)
..+|+|.|+.|+||||+++.+++++.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg 52 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFG 52 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999998653
No 368
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=93.89 E-value=0.057 Score=53.30 Aligned_cols=35 Identities=31% Similarity=0.430 Sum_probs=27.5
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhhccccceEEEE
Q 003802 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~ 50 (794)
++|+|.|.||+||||+|..++..+..+=..+..++
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~G~~VlliD 36 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVG 36 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHCCCcEEEEc
Confidence 68888999999999999999987654433455555
No 369
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=93.83 E-value=0.057 Score=48.93 Aligned_cols=28 Identities=32% Similarity=0.417 Sum_probs=24.1
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHHHhhc
Q 003802 14 DVRFIGICGMGGIGKTTLAKVLYNTLKD 41 (794)
Q Consensus 14 ~~~vi~i~G~~GvGKTtLa~~v~~~~~~ 41 (794)
..++++|+|+.|+||||++..+......
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~l~~ 32 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPALCA 32 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHhccc
Confidence 3679999999999999999999886543
No 370
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=93.83 E-value=0.03 Score=50.91 Aligned_cols=21 Identities=33% Similarity=0.529 Sum_probs=18.9
Q ss_pred eEEEEEEccCCCcHHHHHHHH
Q 003802 15 VRFIGICGMGGIGKTTLAKVL 35 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v 35 (794)
-.+++|+|+.|+|||||++.+
T Consensus 9 gei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHH
Confidence 368999999999999999964
No 371
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=93.82 E-value=0.23 Score=46.25 Aligned_cols=108 Identities=13% Similarity=0.066 Sum_probs=52.0
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEEechhhhcccChHHHHHHHHHHHhcccccc-ccchhhhHHHHHHH
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDLI-IWDVHKGINLIRWR 93 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~l~~~ 93 (794)
-.+..++|.-|.||||.|...+++...+-..++.+.- ..+-+.....+.+.+....... ..+.+ .+.+.
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~------~~d~R~ge~~i~s~~g~~~~a~~~~~~~----~~~~~ 97 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKP------CIDNRYSEEDVVSHNGLKVKAVPVSASK----DIFKH 97 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEC------C-----------------CCEEECSSGG----GGGGG
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEe------ccCCcchHHHHHhhcCCeeEEeecCCHH----HHHHH
Confidence 4788999999999999999998876554334433321 1111111223333322221111 11111 22222
Q ss_pred hcCCeEEEEEcCCCCh--HHHHHHhcCCCCCCCCCEEEEEeCCh
Q 003802 94 LCRKRVLVILDDVDQL--EQLQALVGNHDWFGFGSRIIITSRDE 135 (794)
Q Consensus 94 l~~~r~LlVlDd~~~~--~~~~~l~~~~~~~~~gs~IlvTtR~~ 135 (794)
..++-=+|++|.+.-. +.++.+.... ..|-.||+|-++.
T Consensus 98 ~~~~~dvViIDEaQF~~~~~V~~l~~l~---~~~~~Vi~~Gl~~ 138 (214)
T 2j9r_A 98 ITEEMDVIAIDEVQFFDGDIVEVVQVLA---NRGYRVIVAGLDQ 138 (214)
T ss_dssp CCSSCCEEEECCGGGSCTTHHHHHHHHH---HTTCEEEEEECSB
T ss_pred HhcCCCEEEEECcccCCHHHHHHHHHHh---hCCCEEEEEeccc
Confidence 3333349999998432 3343332211 1377899999953
No 372
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=93.80 E-value=0.035 Score=52.29 Aligned_cols=22 Identities=36% Similarity=0.599 Sum_probs=20.4
Q ss_pred EEEEEEccCCCcHHHHHHHHHH
Q 003802 16 RFIGICGMGGIGKTTLAKVLYN 37 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~ 37 (794)
.+|+|.|+.|+||||+++.++.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999976
No 373
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=93.79 E-value=0.042 Score=53.52 Aligned_cols=48 Identities=23% Similarity=0.338 Sum_probs=31.8
Q ss_pred hhhHhHhcCCCCeEEEEEEccCCCcHHHHHHHHHHH-hhccccceEEEE
Q 003802 3 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNT-LKDQFEASSFLA 50 (794)
Q Consensus 3 ~l~~~l~~~~~~~~vi~i~G~~GvGKTtLa~~v~~~-~~~~f~~~~~~~ 50 (794)
.+.+++..+-+.-.++.|.|.+|+|||++|.+++.. ..+.-..++|++
T Consensus 18 ~LD~~l~GGl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s 66 (251)
T 2zts_A 18 GFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVT 66 (251)
T ss_dssp TTGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred HHHHhhcCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeec
Confidence 344444433233468999999999999999988754 344344566655
No 374
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=93.78 E-value=0.025 Score=56.83 Aligned_cols=25 Identities=24% Similarity=0.410 Sum_probs=22.7
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhh
Q 003802 16 RFIGICGMGGIGKTTLAKVLYNTLK 40 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~~~~ 40 (794)
++|+|+|+.|+||||||..+++++.
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCC
Confidence 5899999999999999999998653
No 375
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=93.77 E-value=0.033 Score=57.84 Aligned_cols=26 Identities=38% Similarity=0.362 Sum_probs=23.1
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhh
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNTLK 40 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~~~ 40 (794)
.+.|.++|++|+|||++|+.+++...
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 45788999999999999999999764
No 376
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=93.77 E-value=0.061 Score=51.21 Aligned_cols=29 Identities=24% Similarity=0.304 Sum_probs=25.0
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHHHhhcc
Q 003802 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQ 42 (794)
Q Consensus 14 ~~~vi~i~G~~GvGKTtLa~~v~~~~~~~ 42 (794)
..++|+|+|.+|+|||||+..+.......
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~ 57 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNE 57 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccC
Confidence 56899999999999999999998865444
No 377
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=93.74 E-value=0.036 Score=54.95 Aligned_cols=26 Identities=27% Similarity=0.468 Sum_probs=22.9
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhh
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNTLK 40 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~~~ 40 (794)
.++|+|.|+.|+||||||..++++..
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~ 28 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLN 28 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCc
Confidence 36899999999999999999998653
No 378
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=93.72 E-value=0.039 Score=52.41 Aligned_cols=23 Identities=30% Similarity=0.406 Sum_probs=20.7
Q ss_pred EEEEEccCCCcHHHHHHHHHHHh
Q 003802 17 FIGICGMGGIGKTTLAKVLYNTL 39 (794)
Q Consensus 17 vi~i~G~~GvGKTtLa~~v~~~~ 39 (794)
.|+|.|+.|+||||+|+.+++++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998865
No 379
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=93.71 E-value=0.04 Score=55.62 Aligned_cols=25 Identities=28% Similarity=0.293 Sum_probs=22.9
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhh
Q 003802 16 RFIGICGMGGIGKTTLAKVLYNTLK 40 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~~~~ 40 (794)
.+|+|.|+.|+||||+|+.++..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 5899999999999999999998754
No 380
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=93.70 E-value=0.038 Score=51.17 Aligned_cols=25 Identities=36% Similarity=0.567 Sum_probs=22.6
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHh
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNTL 39 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~~ 39 (794)
-.+|+|+|+.|+||||+|+.+.+..
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999998863
No 381
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=93.70 E-value=0.036 Score=54.13 Aligned_cols=25 Identities=40% Similarity=0.539 Sum_probs=22.6
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhh
Q 003802 16 RFIGICGMGGIGKTTLAKVLYNTLK 40 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~~~~ 40 (794)
.+|+|+|+.|+||||+++.+++++.
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~Lg 52 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAESLN 52 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5899999999999999999998653
No 382
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=93.70 E-value=0.062 Score=53.71 Aligned_cols=36 Identities=31% Similarity=0.431 Sum_probs=27.5
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEE
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~ 50 (794)
.++|+|.|.||+||||+|..++..+...=..+..++
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~La~~G~rVlliD 37 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVG 37 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEEe
Confidence 478999999999999999999986654323445554
No 383
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=93.68 E-value=0.025 Score=53.64 Aligned_cols=25 Identities=36% Similarity=0.598 Sum_probs=22.4
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhhc
Q 003802 17 FIGICGMGGIGKTTLAKVLYNTLKD 41 (794)
Q Consensus 17 vi~i~G~~GvGKTtLa~~v~~~~~~ 41 (794)
+|+|.|+.|+||||+|+.+...+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 7899999999999999999987653
No 384
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=93.63 E-value=0.046 Score=54.06 Aligned_cols=26 Identities=35% Similarity=0.243 Sum_probs=23.4
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHHHh
Q 003802 14 DVRFIGICGMGGIGKTTLAKVLYNTL 39 (794)
Q Consensus 14 ~~~vi~i~G~~GvGKTtLa~~v~~~~ 39 (794)
..++|+|.|+.|+||||||..+++..
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhC
Confidence 35789999999999999999999874
No 385
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=93.63 E-value=0.069 Score=50.17 Aligned_cols=31 Identities=13% Similarity=0.000 Sum_probs=23.8
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhh-ccccce
Q 003802 16 RFIGICGMGGIGKTTLAKVLYNTLK-DQFEAS 46 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~~~~-~~f~~~ 46 (794)
-.|.+.|.||+||||+|..++.... ..++..
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~ 38 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVM 38 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEE
Confidence 3477899999999999999988654 445443
No 386
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=93.61 E-value=0.035 Score=53.24 Aligned_cols=25 Identities=24% Similarity=0.266 Sum_probs=22.4
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHh
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNTL 39 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~~ 39 (794)
...|+|.|+.|+||||+|+.+++..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3579999999999999999999865
No 387
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=93.60 E-value=0.042 Score=52.41 Aligned_cols=25 Identities=24% Similarity=0.438 Sum_probs=22.6
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhh
Q 003802 16 RFIGICGMGGIGKTTLAKVLYNTLK 40 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~~~~ 40 (794)
.+|+|.|++|+||||+|+.+++.+.
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5899999999999999999998753
No 388
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=93.56 E-value=0.038 Score=52.11 Aligned_cols=25 Identities=24% Similarity=0.488 Sum_probs=22.3
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHh
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNTL 39 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~~ 39 (794)
-.+++|.|+.|+|||||++.+....
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3589999999999999999998754
No 389
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=93.56 E-value=0.046 Score=50.09 Aligned_cols=26 Identities=31% Similarity=0.364 Sum_probs=23.0
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhh
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNTLK 40 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~~~ 40 (794)
..+|+|.|+.|+||||+++.++....
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~ 30 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLV 30 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 46899999999999999999998654
No 390
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=93.56 E-value=0.044 Score=53.23 Aligned_cols=26 Identities=27% Similarity=0.424 Sum_probs=23.0
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHHHh
Q 003802 14 DVRFIGICGMGGIGKTTLAKVLYNTL 39 (794)
Q Consensus 14 ~~~vi~i~G~~GvGKTtLa~~v~~~~ 39 (794)
...+|+|.|+.|+|||||++.++...
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 34799999999999999999998854
No 391
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=93.52 E-value=0.05 Score=54.69 Aligned_cols=29 Identities=34% Similarity=0.431 Sum_probs=24.9
Q ss_pred CCCeEEEEEEccCCCcHHHHHHHHHHHhh
Q 003802 12 LDDVRFIGICGMGGIGKTTLAKVLYNTLK 40 (794)
Q Consensus 12 ~~~~~vi~i~G~~GvGKTtLa~~v~~~~~ 40 (794)
...+.+|+|.|+.|+||||+|+.+.....
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34577999999999999999999987654
No 392
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=93.51 E-value=0.093 Score=56.34 Aligned_cols=37 Identities=22% Similarity=0.224 Sum_probs=26.8
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEE
Q 003802 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (794)
Q Consensus 14 ~~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~ 50 (794)
..++|+|+|.+|+||||++..++..++..=..+..++
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd 136 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLIC 136 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEe
Confidence 4789999999999999999999986654322334443
No 393
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=93.51 E-value=0.039 Score=55.28 Aligned_cols=25 Identities=36% Similarity=0.344 Sum_probs=22.7
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhh
Q 003802 16 RFIGICGMGGIGKTTLAKVLYNTLK 40 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~~~~ 40 (794)
++|+|+|+.|+||||+|+.++++..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 6899999999999999999998753
No 394
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=93.49 E-value=0.066 Score=52.33 Aligned_cols=109 Identities=13% Similarity=0.141 Sum_probs=59.8
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEEechhhhccc-ChHHHHHHHHHHHhccccccccchhhhHHHHHHH
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTR-GLVPLQEQLLSEVLMERDLIIWDVHKGINLIRWR 93 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~ 93 (794)
-.+++|+|+.|+||||+++.+...+...+...+++.... +.... ... .+....... .+.......+...
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~-i~~~~~~~~--------~~v~q~~~g-l~~~~l~~~la~a 94 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDP-IEYVFKHKK--------SIVNQREVG-EDTKSFADALRAA 94 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESS-CCSCCCCSS--------SEEEEEEBT-TTBSCHHHHHHHH
T ss_pred CCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCc-ceeecCCcc--------eeeeHHHhC-CCHHHHHHHHHHH
Confidence 469999999999999999999886544334555543211 00000 000 000000000 0112234456666
Q ss_pred hcCCeEEEEEcCCCChHHHHHHhcCCCCCCCCCEEEEEeCChh
Q 003802 94 LCRKRVLVILDDVDQLEQLQALVGNHDWFGFGSRIIITSRDEH 136 (794)
Q Consensus 94 l~~~r~LlVlDd~~~~~~~~~l~~~~~~~~~gs~IlvTtR~~~ 136 (794)
+..++=++++|+..+.+......... ..|..|++||-...
T Consensus 95 L~~~p~illlDEp~D~~~~~~~l~~~---~~g~~vl~t~H~~~ 134 (261)
T 2eyu_A 95 LREDPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTNT 134 (261)
T ss_dssp HHHCCSEEEESCCCSHHHHHHHHHHH---HTTCEEEEEECCSS
T ss_pred HhhCCCEEEeCCCCCHHHHHHHHHHH---ccCCEEEEEeCcch
Confidence 66677789999997665544333221 24667888887644
No 395
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=93.48 E-value=0.033 Score=54.00 Aligned_cols=25 Identities=40% Similarity=0.589 Sum_probs=22.6
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhh
Q 003802 16 RFIGICGMGGIGKTTLAKVLYNTLK 40 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~~~~ 40 (794)
.+|+|+|+.|+||||+++.++....
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4799999999999999999998754
No 396
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=93.48 E-value=0.044 Score=55.16 Aligned_cols=28 Identities=36% Similarity=0.446 Sum_probs=24.4
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHHHHhh
Q 003802 13 DDVRFIGICGMGGIGKTTLAKVLYNTLK 40 (794)
Q Consensus 13 ~~~~vi~i~G~~GvGKTtLa~~v~~~~~ 40 (794)
....+|+|.|+.|+|||||++.++....
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 4468999999999999999999988554
No 397
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=93.48 E-value=0.046 Score=54.31 Aligned_cols=25 Identities=32% Similarity=0.652 Sum_probs=22.3
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHHH
Q 003802 13 DDVRFIGICGMGGIGKTTLAKVLYN 37 (794)
Q Consensus 13 ~~~~vi~i~G~~GvGKTtLa~~v~~ 37 (794)
+...+|+|+|+.|+||||+|+.+..
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3468999999999999999999984
No 398
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=93.44 E-value=0.042 Score=52.19 Aligned_cols=23 Identities=22% Similarity=0.348 Sum_probs=20.5
Q ss_pred EEEEEccCCCcHHHHHHHHHHHh
Q 003802 17 FIGICGMGGIGKTTLAKVLYNTL 39 (794)
Q Consensus 17 vi~i~G~~GvGKTtLa~~v~~~~ 39 (794)
.|+|.|+.|+||||+|+.+++++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998764
No 399
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=93.43 E-value=0.056 Score=51.11 Aligned_cols=26 Identities=35% Similarity=0.316 Sum_probs=23.3
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhh
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNTLK 40 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~~~ 40 (794)
..+|+|.|+.|+||||+|+.++....
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 47899999999999999999998664
No 400
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=93.41 E-value=0.074 Score=49.81 Aligned_cols=30 Identities=33% Similarity=0.583 Sum_probs=25.7
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhhccccc
Q 003802 16 RFIGICGMGGIGKTTLAKVLYNTLKDQFEA 45 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~ 45 (794)
+.|+|-|+.|+||||+++.+++.+...++.
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~~~~~v 32 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLVKDYDV 32 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTTTSCE
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHCCCCE
Confidence 578999999999999999999988665543
No 401
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=93.40 E-value=0.23 Score=53.99 Aligned_cols=61 Identities=11% Similarity=0.033 Sum_probs=39.0
Q ss_pred hhHhHhcCCCCeEEEEEEccCCCcHHHHHHHHHHHhhcc-ccceEEEEechhhhcccChHHHHHHHHHH
Q 003802 4 MNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ-FEASSFLANVREVSVTRGLVPLQEQLLSE 71 (794)
Q Consensus 4 l~~~l~~~~~~~~vi~i~G~~GvGKTtLa~~v~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 71 (794)
+.+++. +-..-.++.|.|.+|+||||+|.+++...... =..++|++. .....++...++..
T Consensus 232 LD~~lg-Gl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~------E~s~~~l~~r~~~~ 293 (503)
T 1q57_A 232 INDKTL-GARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAML------EESVEETAEDLIGL 293 (503)
T ss_dssp HHHHHC-CCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEES------SSCHHHHHHHHHHH
T ss_pred hhHhhc-ccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEec------cCCHHHHHHHHHHH
Confidence 444442 33344688999999999999999999866543 335677652 23344555555443
No 402
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=93.39 E-value=0.042 Score=52.12 Aligned_cols=26 Identities=23% Similarity=0.303 Sum_probs=23.0
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhh
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNTLK 40 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~~~ 40 (794)
-.+++|+|+.|+|||||++.+.....
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC
Confidence 46899999999999999999988654
No 403
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=93.39 E-value=0.034 Score=52.84 Aligned_cols=25 Identities=44% Similarity=0.699 Sum_probs=22.2
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHh
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNTL 39 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~~ 39 (794)
-.+++|+|+.|+|||||++.++...
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3589999999999999999998854
No 404
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=93.39 E-value=0.041 Score=58.04 Aligned_cols=37 Identities=27% Similarity=0.319 Sum_probs=27.5
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEE
Q 003802 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (794)
Q Consensus 14 ~~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~ 50 (794)
..++|+|+|.+|+||||+|..++...+..-..+..++
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~ 134 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIA 134 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 3579999999999999999999886543322344443
No 405
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=93.37 E-value=0.18 Score=53.13 Aligned_cols=26 Identities=19% Similarity=0.298 Sum_probs=23.2
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHHHh
Q 003802 14 DVRFIGICGMGGIGKTTLAKVLYNTL 39 (794)
Q Consensus 14 ~~~vi~i~G~~GvGKTtLa~~v~~~~ 39 (794)
...+|.|+|++|+||||+|++++.+.
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 46899999999999999999998754
No 406
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=93.35 E-value=0.032 Score=50.52 Aligned_cols=26 Identities=31% Similarity=0.479 Sum_probs=22.7
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhhc
Q 003802 16 RFIGICGMGGIGKTTLAKVLYNTLKD 41 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~~~~~ 41 (794)
++|+|+|..|+|||||++.+...+..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~ 28 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRE 28 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 58999999999999999999885543
No 407
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=93.27 E-value=0.046 Score=50.46 Aligned_cols=24 Identities=38% Similarity=0.477 Sum_probs=21.4
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhh
Q 003802 17 FIGICGMGGIGKTTLAKVLYNTLK 40 (794)
Q Consensus 17 vi~i~G~~GvGKTtLa~~v~~~~~ 40 (794)
+++|+|+.|+|||||++.++...+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhcc
Confidence 689999999999999999988553
No 408
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=93.26 E-value=0.089 Score=51.62 Aligned_cols=27 Identities=30% Similarity=0.348 Sum_probs=24.0
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHHHhh
Q 003802 14 DVRFIGICGMGGIGKTTLAKVLYNTLK 40 (794)
Q Consensus 14 ~~~vi~i~G~~GvGKTtLa~~v~~~~~ 40 (794)
...++.+.|.||+||||++..++....
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 468899999999999999999998665
No 409
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=93.22 E-value=0.069 Score=54.01 Aligned_cols=31 Identities=23% Similarity=0.423 Sum_probs=25.2
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHHHHhhccc
Q 003802 13 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQF 43 (794)
Q Consensus 13 ~~~~vi~i~G~~GvGKTtLa~~v~~~~~~~f 43 (794)
+....|.|+|+.|+||||+++.++....-.|
T Consensus 22 g~~~~i~l~G~~G~GKTTl~~~la~~l~~~f 52 (359)
T 2ga8_A 22 NYRVCVILVGSPGSGKSTIAEELCQIINEKY 52 (359)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 4466799999999999999999998654433
No 410
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=93.22 E-value=0.042 Score=52.20 Aligned_cols=24 Identities=21% Similarity=0.271 Sum_probs=21.9
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHh
Q 003802 16 RFIGICGMGGIGKTTLAKVLYNTL 39 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~~~ 39 (794)
..|+|.|+.|+||||+|+.+++++
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999876
No 411
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=93.20 E-value=0.049 Score=51.12 Aligned_cols=24 Identities=25% Similarity=0.343 Sum_probs=22.2
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHh
Q 003802 16 RFIGICGMGGIGKTTLAKVLYNTL 39 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~~~ 39 (794)
.+|+|.|+.|+||||+++.+++.+
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTS
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHH
Confidence 579999999999999999999876
No 412
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=93.18 E-value=0.058 Score=51.29 Aligned_cols=23 Identities=26% Similarity=0.398 Sum_probs=21.1
Q ss_pred eEEEEEEccCCCcHHHHHHHHHH
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYN 37 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~ 37 (794)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999976
No 413
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=93.18 E-value=0.1 Score=53.00 Aligned_cols=47 Identities=19% Similarity=0.287 Sum_probs=32.5
Q ss_pred hhHhHhcCCCCeEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEE
Q 003802 4 MNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (794)
Q Consensus 4 l~~~l~~~~~~~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~ 50 (794)
+.+++....+-..++...|.||+||||+|..++....+.=..+..++
T Consensus 3 i~~~l~~~~gm~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD 49 (324)
T 3zq6_A 3 FKDLFKFNKGKTTFVFIGGKGGVGKTTISAATALWMARSGKKTLVIS 49 (324)
T ss_dssp GGGGCCCBTTBCEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred hhHhhcCCCCCeEEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEe
Confidence 44555443322577888999999999999999987655534455554
No 414
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=93.17 E-value=0.056 Score=50.88 Aligned_cols=24 Identities=25% Similarity=0.385 Sum_probs=22.1
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhh
Q 003802 17 FIGICGMGGIGKTTLAKVLYNTLK 40 (794)
Q Consensus 17 vi~i~G~~GvGKTtLa~~v~~~~~ 40 (794)
+|+|.|+.|+||||+|+.++..+.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 899999999999999999998654
No 415
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=93.15 E-value=0.048 Score=53.24 Aligned_cols=27 Identities=26% Similarity=0.367 Sum_probs=24.0
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHHHhh
Q 003802 14 DVRFIGICGMGGIGKTTLAKVLYNTLK 40 (794)
Q Consensus 14 ~~~vi~i~G~~GvGKTtLa~~v~~~~~ 40 (794)
...+|.|.|++|+||||+|+.++....
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 467999999999999999999998754
No 416
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=93.14 E-value=0.17 Score=51.42 Aligned_cols=37 Identities=19% Similarity=0.054 Sum_probs=26.3
Q ss_pred hhHhHhcCCCCeEEEEEEccCCCcHHHHHHHHHHHhhc
Q 003802 4 MNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKD 41 (794)
Q Consensus 4 l~~~l~~~~~~~~vi~i~G~~GvGKTtLa~~v~~~~~~ 41 (794)
+.+.+..-.. -.-++|+|.+|+|||+|+.++++.+..
T Consensus 165 aID~l~Pigr-GQR~lIfg~~g~GKT~Ll~~Ia~~i~~ 201 (427)
T 3l0o_A 165 LIDLFAPIGK-GQRGMIVAPPKAGKTTILKEIANGIAE 201 (427)
T ss_dssp HHHHHSCCBT-TCEEEEEECTTCCHHHHHHHHHHHHHH
T ss_pred hhhhcccccC-CceEEEecCCCCChhHHHHHHHHHHhh
Confidence 3444544222 246789999999999999999986543
No 417
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=93.11 E-value=0.32 Score=53.54 Aligned_cols=27 Identities=26% Similarity=0.398 Sum_probs=23.2
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhhcc
Q 003802 16 RFIGICGMGGIGKTTLAKVLYNTLKDQ 42 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~~~~~~ 42 (794)
+++.|+|++|+||||++..+...+...
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~ 231 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESL 231 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 688999999999999999998865543
No 418
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=93.07 E-value=0.09 Score=52.48 Aligned_cols=37 Identities=30% Similarity=0.259 Sum_probs=27.8
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEE
Q 003802 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (794)
Q Consensus 14 ~~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~ 50 (794)
..++|+|+|.+|+||||++..++...+..-..+.++.
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~ 133 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVA 133 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEec
Confidence 3579999999999999999999986654323344443
No 419
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=92.98 E-value=0.06 Score=51.38 Aligned_cols=23 Identities=30% Similarity=0.346 Sum_probs=21.2
Q ss_pred EEEEEccCCCcHHHHHHHHHHHh
Q 003802 17 FIGICGMGGIGKTTLAKVLYNTL 39 (794)
Q Consensus 17 vi~i~G~~GvGKTtLa~~v~~~~ 39 (794)
.|+|.|+.|+||||+|+.+++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999876
No 420
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=92.98 E-value=0.056 Score=52.01 Aligned_cols=26 Identities=27% Similarity=0.119 Sum_probs=23.0
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhh
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNTLK 40 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~~~ 40 (794)
...|+|.|+.|+||||+|+.+++++.
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35789999999999999999998764
No 421
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=92.98 E-value=0.16 Score=47.77 Aligned_cols=27 Identities=30% Similarity=0.480 Sum_probs=24.1
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhhcc
Q 003802 16 RFIGICGMGGIGKTTLAKVLYNTLKDQ 42 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~~~~~~ 42 (794)
..|+|.|+.|+||||+++.+++.+...
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~l~~~ 33 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAERLRER 33 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 689999999999999999999977644
No 422
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=92.95 E-value=0.3 Score=53.41 Aligned_cols=36 Identities=25% Similarity=0.227 Sum_probs=26.7
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEE
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~ 50 (794)
-.+++|.|+.|+|||||++.++......=..++++.
T Consensus 281 G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~ 316 (525)
T 1tf7_A 281 DSIILATGATGTGKTLLVSRFVENACANKERAILFA 316 (525)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEE
Confidence 468999999999999999999875443212345554
No 423
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=92.95 E-value=0.047 Score=50.00 Aligned_cols=24 Identities=29% Similarity=0.221 Sum_probs=21.6
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHh
Q 003802 16 RFIGICGMGGIGKTTLAKVLYNTL 39 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~~~ 39 (794)
+.|.|.|+.|+||||||.+++.+.
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC
Confidence 678999999999999999998853
No 424
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=92.92 E-value=0.061 Score=50.94 Aligned_cols=23 Identities=26% Similarity=0.219 Sum_probs=20.9
Q ss_pred EEEEEccCCCcHHHHHHHHHHHh
Q 003802 17 FIGICGMGGIGKTTLAKVLYNTL 39 (794)
Q Consensus 17 vi~i~G~~GvGKTtLa~~v~~~~ 39 (794)
.|+|.|+.|+||||+|+.+++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999875
No 425
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=92.87 E-value=0.032 Score=55.60 Aligned_cols=27 Identities=19% Similarity=0.417 Sum_probs=20.4
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHHHhh
Q 003802 14 DVRFIGICGMGGIGKTTLAKVLYNTLK 40 (794)
Q Consensus 14 ~~~vi~i~G~~GvGKTtLa~~v~~~~~ 40 (794)
...+|+|.|+.|+||||+|+.+.+.+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 346899999999999999999988654
No 426
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=92.84 E-value=0.12 Score=49.35 Aligned_cols=28 Identities=36% Similarity=0.472 Sum_probs=24.8
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHHHhhc
Q 003802 14 DVRFIGICGMGGIGKTTLAKVLYNTLKD 41 (794)
Q Consensus 14 ~~~vi~i~G~~GvGKTtLa~~v~~~~~~ 41 (794)
....|+|.|+.|+||||+++.+++....
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 4578999999999999999999997765
No 427
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=92.78 E-value=0.084 Score=51.10 Aligned_cols=36 Identities=22% Similarity=0.331 Sum_probs=27.0
Q ss_pred hhHhHhcCCCCeEEEEEEccCCCcHHHHHHHHHHHh
Q 003802 4 MNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTL 39 (794)
Q Consensus 4 l~~~l~~~~~~~~vi~i~G~~GvGKTtLa~~v~~~~ 39 (794)
+..++....+....|.++|++|.|||.+|..+++.+
T Consensus 93 l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 93 FLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp HHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred HHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 444555442434568999999999999999999853
No 428
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=92.77 E-value=0.095 Score=52.56 Aligned_cols=36 Identities=14% Similarity=0.140 Sum_probs=27.3
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhhcccc-ceEEEE
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFE-ASSFLA 50 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~-~~~~~~ 50 (794)
-.+++|.|++|+|||||++.++......-. .+.|+.
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~ 71 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM 71 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 358999999999999999999886543322 455654
No 429
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=92.74 E-value=0.11 Score=51.68 Aligned_cols=26 Identities=27% Similarity=0.342 Sum_probs=22.6
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhhc
Q 003802 16 RFIGICGMGGIGKTTLAKVLYNTLKD 41 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~~~~~ 41 (794)
.++.|+|++|+|||||+..++..+..
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~~~~~ 56 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAAQIAG 56 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 68999999999999999999875443
No 430
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=92.63 E-value=0.068 Score=55.02 Aligned_cols=25 Identities=32% Similarity=0.545 Sum_probs=22.8
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhh
Q 003802 16 RFIGICGMGGIGKTTLAKVLYNTLK 40 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~~~~ 40 (794)
++|+|.|+.|+||||||..++..+.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC
Confidence 5899999999999999999998764
No 431
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=92.56 E-value=0.16 Score=51.97 Aligned_cols=30 Identities=23% Similarity=0.330 Sum_probs=25.2
Q ss_pred CCCeEEEEEEccCCCcHHHHHHHHHHHhhc
Q 003802 12 LDDVRFIGICGMGGIGKTTLAKVLYNTLKD 41 (794)
Q Consensus 12 ~~~~~vi~i~G~~GvGKTtLa~~v~~~~~~ 41 (794)
..+..+|+|+|.+|+||||++..++...+.
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~ 82 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGMLLIR 82 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 345789999999999999999999875543
No 432
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=92.54 E-value=0.043 Score=52.74 Aligned_cols=24 Identities=29% Similarity=0.364 Sum_probs=16.1
Q ss_pred EEEEEEccCCCcHHHHHHHHH-HHh
Q 003802 16 RFIGICGMGGIGKTTLAKVLY-NTL 39 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~-~~~ 39 (794)
.+|+|+|+.|+|||||++.++ ...
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC---
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCC
Confidence 589999999999999999998 654
No 433
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=92.47 E-value=0.11 Score=55.14 Aligned_cols=36 Identities=33% Similarity=0.390 Sum_probs=27.8
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEE
Q 003802 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (794)
Q Consensus 14 ~~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~ 50 (794)
...+|+|+|+.|+||||+++.++..++.. ...+++.
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~-~G~V~l~ 327 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQQ-GKSVMLA 327 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhhc-CCeEEEe
Confidence 35799999999999999999999865533 3445553
No 434
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=92.46 E-value=0.11 Score=48.75 Aligned_cols=35 Identities=23% Similarity=0.220 Sum_probs=26.9
Q ss_pred EEEEEE-ccCCCcHHHHHHHHHHHhhccccceEEEE
Q 003802 16 RFIGIC-GMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (794)
Q Consensus 16 ~vi~i~-G~~GvGKTtLa~~v~~~~~~~f~~~~~~~ 50 (794)
++|+|+ +.||+||||+|..++..+..+-..+..++
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD 37 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSRSGYNIAVVD 37 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEE
Confidence 678887 68999999999999986655434456665
No 435
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=92.42 E-value=0.18 Score=61.90 Aligned_cols=36 Identities=25% Similarity=0.338 Sum_probs=28.7
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEE
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~ 50 (794)
-.+|.|.|++|+||||||.+++......-..++|++
T Consensus 732 G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS 767 (1706)
T 3cmw_A 732 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 767 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEe
Confidence 468999999999999999999886554334567775
No 436
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=92.38 E-value=0.31 Score=51.15 Aligned_cols=52 Identities=31% Similarity=0.314 Sum_probs=33.5
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHh-hccccceEEEEechhhhcccChHHHHHHHHH
Q 003802 16 RFIGICGMGGIGKTTLAKVLYNTL-KDQFEASSFLANVREVSVTRGLVPLQEQLLS 70 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~~~-~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~ 70 (794)
.-++|.|.+|+|||+|+.++++.+ +++-+.++++-+.. +...+.++.+++..
T Consensus 154 Qr~~Ifgg~G~GKT~L~~~i~~~~~~~~~~v~V~~~iGE---R~rEv~e~~~~~~~ 206 (482)
T 2ck3_D 154 GKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGE---RTREGNDLYHEMIE 206 (482)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTTTCSSEEEEEEESC---CHHHHHHHHHHHHH
T ss_pred CeeeeecCCCCChHHHHHHHHHhhHhhCCCEEEEEECCC---cchHHHHHHHHhhh
Confidence 467899999999999999999875 33335556554221 12234445555544
No 437
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=92.36 E-value=0.081 Score=53.31 Aligned_cols=28 Identities=36% Similarity=0.400 Sum_probs=24.4
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHHHHhh
Q 003802 13 DDVRFIGICGMGGIGKTTLAKVLYNTLK 40 (794)
Q Consensus 13 ~~~~vi~i~G~~GvGKTtLa~~v~~~~~ 40 (794)
....+|+|.|+.|+|||||++.+.....
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3457999999999999999999988654
No 438
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=92.33 E-value=0.068 Score=55.78 Aligned_cols=26 Identities=35% Similarity=0.369 Sum_probs=22.9
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhh
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNTLK 40 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~~~ 40 (794)
.+.|.++|++|+|||++|+.+++...
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l~ 97 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHLD 97 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhC
Confidence 35688999999999999999999764
No 439
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=92.27 E-value=0.32 Score=51.28 Aligned_cols=52 Identities=31% Similarity=0.268 Sum_probs=34.4
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHh-hccccceEEEEechhhhcccChHHHHHHHHH
Q 003802 16 RFIGICGMGGIGKTTLAKVLYNTL-KDQFEASSFLANVREVSVTRGLVPLQEQLLS 70 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~~~-~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~ 70 (794)
.-++|.|.+|+|||+|+.++++.+ +++-+..+++-+.. +...+.+..+++..
T Consensus 166 qr~gIfgg~GvGKT~L~~~l~~~~a~~~~~v~V~~~iGE---R~rEv~e~~~~~~~ 218 (498)
T 1fx0_B 166 GKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGGVGE---RTREGNDLYMEMKE 218 (498)
T ss_dssp CCEEEEECSSSSHHHHHHHHHHHTTTTCSSCEEEEEESC---CSHHHHHHHHHHHH
T ss_pred CeEEeecCCCCCchHHHHHHHHHHHhhCCCEEEEEEccc---CcHHHHHHHHhhhc
Confidence 467899999999999999999975 34446666664221 12234445555544
No 440
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=92.26 E-value=0.074 Score=51.21 Aligned_cols=22 Identities=18% Similarity=0.406 Sum_probs=20.6
Q ss_pred EEEEEEccCCCcHHHHHHHHHH
Q 003802 16 RFIGICGMGGIGKTTLAKVLYN 37 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~ 37 (794)
.+++|.|+.|+|||||++.++-
T Consensus 25 e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 6899999999999999999986
No 441
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=92.22 E-value=0.1 Score=53.76 Aligned_cols=29 Identities=31% Similarity=0.279 Sum_probs=24.3
Q ss_pred CCCCeEEEEEEccCCCcHHHHHHHHHHHh
Q 003802 11 GLDDVRFIGICGMGGIGKTTLAKVLYNTL 39 (794)
Q Consensus 11 ~~~~~~vi~i~G~~GvGKTtLa~~v~~~~ 39 (794)
+-+..++++|+|+.|+|||||++.++...
T Consensus 165 ~i~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 165 NIPKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 33445699999999999999999999754
No 442
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=92.18 E-value=0.059 Score=50.57 Aligned_cols=23 Identities=30% Similarity=0.164 Sum_probs=20.6
Q ss_pred EEEEEEccCCCcHHHHHHHHHHH
Q 003802 16 RFIGICGMGGIGKTTLAKVLYNT 38 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~~ 38 (794)
.+++|.|+.|+|||||++.++-.
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999998764
No 443
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=92.18 E-value=0.065 Score=51.50 Aligned_cols=22 Identities=32% Similarity=0.602 Sum_probs=20.3
Q ss_pred EEEEEEccCCCcHHHHHHHHHH
Q 003802 16 RFIGICGMGGIGKTTLAKVLYN 37 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~ 37 (794)
.+++|+|+.|+|||||++.++-
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 5899999999999999999875
No 444
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=92.15 E-value=0.065 Score=51.08 Aligned_cols=22 Identities=41% Similarity=0.599 Sum_probs=20.2
Q ss_pred EEEEEEccCCCcHHHHHHHHHH
Q 003802 16 RFIGICGMGGIGKTTLAKVLYN 37 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~ 37 (794)
.+++|+|+.|+|||||++.++-
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999875
No 445
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=92.14 E-value=0.15 Score=52.16 Aligned_cols=44 Identities=25% Similarity=0.416 Sum_probs=31.8
Q ss_pred hHhHhcCCCCeEEEEEEccCCCcHHHHHHHHHHHhh--ccccceEEEE
Q 003802 5 NGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLK--DQFEASSFLA 50 (794)
Q Consensus 5 ~~~l~~~~~~~~vi~i~G~~GvGKTtLa~~v~~~~~--~~f~~~~~~~ 50 (794)
..+++. +..+++.+.|.||+||||+|..++.... ..=..+..++
T Consensus 10 ~~~l~~--~~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid 55 (348)
T 3io3_A 10 ESIVQH--DSLKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLIS 55 (348)
T ss_dssp HHHHTC--TTCSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEE
T ss_pred HHHhcC--CCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 344443 4468999999999999999999998765 4434455554
No 446
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=92.06 E-value=0.093 Score=50.74 Aligned_cols=26 Identities=35% Similarity=0.425 Sum_probs=23.3
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhh
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNTLK 40 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~~~ 40 (794)
...|+|.|..|+||||+++.+++...
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 36899999999999999999998764
No 447
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=92.06 E-value=0.12 Score=60.91 Aligned_cols=23 Identities=22% Similarity=0.082 Sum_probs=20.6
Q ss_pred eEEEEEEccCCCcHHHHHHHHHH
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYN 37 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~ 37 (794)
-++++|+|+.|.||||+.+.+.-
T Consensus 789 g~i~~ItGpNgsGKSTlLr~iGl 811 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQAGL 811 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHH
Confidence 47999999999999999999843
No 448
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=92.04 E-value=0.11 Score=48.20 Aligned_cols=24 Identities=21% Similarity=0.336 Sum_probs=21.5
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHH
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNT 38 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~ 38 (794)
.-.|+|+|..|+|||||++.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 567899999999999999999873
No 449
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=92.01 E-value=0.088 Score=52.94 Aligned_cols=23 Identities=30% Similarity=0.405 Sum_probs=21.2
Q ss_pred EEEEEEccCCCcHHHHHHHHHHH
Q 003802 16 RFIGICGMGGIGKTTLAKVLYNT 38 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~~ 38 (794)
.+|.|.|++|+||||+|+.++++
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 58999999999999999999884
No 450
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=91.96 E-value=0.17 Score=51.27 Aligned_cols=37 Identities=32% Similarity=0.422 Sum_probs=29.1
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEE
Q 003802 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (794)
Q Consensus 14 ~~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~ 50 (794)
..+++.+.|.||+||||+|..++......=..+..++
T Consensus 15 ~~~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid 51 (334)
T 3iqw_A 15 SLRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLS 51 (334)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEE
T ss_pred CeEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEE
Confidence 4578889999999999999999987665544555554
No 451
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=91.92 E-value=0.1 Score=46.45 Aligned_cols=22 Identities=27% Similarity=0.395 Sum_probs=20.1
Q ss_pred EEEEEEccCCCcHHHHHHHHHH
Q 003802 16 RFIGICGMGGIGKTTLAKVLYN 37 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~ 37 (794)
+.|+|.|.+|+|||||+..+..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~ 23 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLK 23 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5688999999999999999986
No 452
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=91.92 E-value=0.9 Score=43.50 Aligned_cols=22 Identities=36% Similarity=0.230 Sum_probs=19.4
Q ss_pred EEEEccCCCcHHHHHHHHHHHh
Q 003802 18 IGICGMGGIGKTTLAKVLYNTL 39 (794)
Q Consensus 18 i~i~G~~GvGKTtLa~~v~~~~ 39 (794)
+.|+|+.|.|||.+|..++...
T Consensus 111 ~ll~~~tG~GKT~~a~~~~~~~ 132 (237)
T 2fz4_A 111 GCIVLPTGSGKTHVAMAAINEL 132 (237)
T ss_dssp EEEEESSSTTHHHHHHHHHHHS
T ss_pred EEEEeCCCCCHHHHHHHHHHHc
Confidence 7789999999999999888764
No 453
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=91.81 E-value=0.16 Score=52.70 Aligned_cols=38 Identities=18% Similarity=0.240 Sum_probs=29.4
Q ss_pred CCeEEEEEEc-cCCCcHHHHHHHHHHHhhccccceEEEE
Q 003802 13 DDVRFIGICG-MGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (794)
Q Consensus 13 ~~~~vi~i~G-~~GvGKTtLa~~v~~~~~~~f~~~~~~~ 50 (794)
...++|+|+| .||+||||+|..++..+...-..+..++
T Consensus 141 ~~~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVlliD 179 (373)
T 3fkq_A 141 DKSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLN 179 (373)
T ss_dssp TSCEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEE
Confidence 4579999986 9999999999999986655433456665
No 454
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=91.81 E-value=0.2 Score=47.84 Aligned_cols=35 Identities=31% Similarity=0.479 Sum_probs=27.3
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhhc-cccceEEE
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNTLKD-QFEASSFL 49 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~~~~-~f~~~~~~ 49 (794)
...|+|.|+.|+||||+++.+++.+.. .++.++..
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~ 62 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRT 62 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeee
Confidence 368999999999999999999997654 34434443
No 455
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=91.80 E-value=0.17 Score=47.97 Aligned_cols=28 Identities=32% Similarity=0.549 Sum_probs=21.4
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhhcc
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQ 42 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~~~~~ 42 (794)
-..|+|.|+.|+||||+++.+++.+...
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l~~~ 52 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRLQER 52 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 3589999999999999999999977653
No 456
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=91.80 E-value=0.099 Score=50.36 Aligned_cols=26 Identities=31% Similarity=0.409 Sum_probs=23.1
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHHHh
Q 003802 14 DVRFIGICGMGGIGKTTLAKVLYNTL 39 (794)
Q Consensus 14 ~~~vi~i~G~~GvGKTtLa~~v~~~~ 39 (794)
...+|+|.|+.|+||||+++.++...
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 35689999999999999999999865
No 457
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=91.76 E-value=0.24 Score=46.54 Aligned_cols=33 Identities=36% Similarity=0.560 Sum_probs=25.9
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhhcc-ccceEE
Q 003802 16 RFIGICGMGGIGKTTLAKVLYNTLKDQ-FEASSF 48 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~~~~~~-f~~~~~ 48 (794)
..|+|.|+.|+||||+++.+++.+... +..+++
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~ 37 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVF 37 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCCccee
Confidence 478999999999999999999976543 434443
No 458
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=91.76 E-value=0.077 Score=51.03 Aligned_cols=23 Identities=26% Similarity=0.512 Sum_probs=20.9
Q ss_pred EEEEEEccCCCcHHHHHHHHHHH
Q 003802 16 RFIGICGMGGIGKTTLAKVLYNT 38 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~~ 38 (794)
.+++|+|+.|+|||||++.++.-
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTC
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999999763
No 459
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=91.74 E-value=0.23 Score=46.87 Aligned_cols=28 Identities=36% Similarity=0.520 Sum_probs=24.7
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHHHhhc
Q 003802 14 DVRFIGICGMGGIGKTTLAKVLYNTLKD 41 (794)
Q Consensus 14 ~~~vi~i~G~~GvGKTtLa~~v~~~~~~ 41 (794)
....|+|.|+.|+||||+++.+++....
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 3578999999999999999999997654
No 460
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=91.72 E-value=0.072 Score=55.65 Aligned_cols=34 Identities=21% Similarity=0.286 Sum_probs=26.3
Q ss_pred hhHhHhcCCCCeEEEEEEccCCCcHHHHHHHHHH
Q 003802 4 MNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYN 37 (794)
Q Consensus 4 l~~~l~~~~~~~~vi~i~G~~GvGKTtLa~~v~~ 37 (794)
+.+.|........+++|+|+.|+|||||.+.+..
T Consensus 58 i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 58 ISDALKEIDSSVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp HHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHT
T ss_pred hhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhC
Confidence 4444444334557999999999999999999986
No 461
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=91.71 E-value=0.074 Score=54.39 Aligned_cols=26 Identities=27% Similarity=0.313 Sum_probs=22.6
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhhcc
Q 003802 17 FIGICGMGGIGKTTLAKVLYNTLKDQ 42 (794)
Q Consensus 17 vi~i~G~~GvGKTtLa~~v~~~~~~~ 42 (794)
-+.++|++|+|||++|+.+++.....
T Consensus 48 ~vll~G~pGtGKT~la~~la~~~~~~ 73 (331)
T 2r44_A 48 HILLEGVPGLAKTLSVNTLAKTMDLD 73 (331)
T ss_dssp CEEEESCCCHHHHHHHHHHHHHTTCC
T ss_pred eEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 57899999999999999999976543
No 462
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=91.70 E-value=0.078 Score=52.17 Aligned_cols=22 Identities=32% Similarity=0.484 Sum_probs=20.2
Q ss_pred EEEEEEccCCCcHHHHHHHHHH
Q 003802 16 RFIGICGMGGIGKTTLAKVLYN 37 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~ 37 (794)
.+++|+|+.|+|||||++.++-
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHc
Confidence 4899999999999999999875
No 463
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=91.68 E-value=0.12 Score=46.46 Aligned_cols=22 Identities=27% Similarity=0.372 Sum_probs=20.1
Q ss_pred EEEEEEccCCCcHHHHHHHHHH
Q 003802 16 RFIGICGMGGIGKTTLAKVLYN 37 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~ 37 (794)
..|+|+|.+|+|||||...+..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 5789999999999999999975
No 464
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=91.63 E-value=0.18 Score=61.82 Aligned_cols=48 Identities=25% Similarity=0.317 Sum_probs=34.0
Q ss_pred hhhHhHh-cCCCCeEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEE
Q 003802 3 KMNGYLE-AGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (794)
Q Consensus 3 ~l~~~l~-~~~~~~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~ 50 (794)
.+.++|. .+-+.-+++.|+|++|+|||++|.+++......=..++|++
T Consensus 21 ~LD~lL~~GGi~~G~i~lI~G~pGsGKT~LAlqla~~~~~~G~~vlYI~ 69 (1706)
T 3cmw_A 21 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 69 (1706)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred HHHHHhhcCCcCCCeEEEEECCCCCCHHHHHHHHHHHHhhCCCceEEEE
Confidence 3445554 33334569999999999999999999875433334678886
No 465
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=91.63 E-value=0.095 Score=50.88 Aligned_cols=23 Identities=35% Similarity=0.550 Sum_probs=20.8
Q ss_pred EEEEEEccCCCcHHHHHHHHHHH
Q 003802 16 RFIGICGMGGIGKTTLAKVLYNT 38 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~~ 38 (794)
.+++|.|+.|+|||||++.++--
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999998863
No 466
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=91.62 E-value=0.11 Score=48.48 Aligned_cols=25 Identities=28% Similarity=0.195 Sum_probs=23.0
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHhh
Q 003802 16 RFIGICGMGGIGKTTLAKVLYNTLK 40 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~~~~ 40 (794)
.+|+|.|+.|+||||+|+.++++..
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg 31 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYN 31 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 5899999999999999999999764
No 467
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=91.61 E-value=0.15 Score=49.60 Aligned_cols=33 Identities=27% Similarity=0.545 Sum_probs=25.5
Q ss_pred EEEEccCCCcHHHHHHHHHHHhhccccceEEEE
Q 003802 18 IGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (794)
Q Consensus 18 i~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~ 50 (794)
|+|.|.||+||||+|..++..+...=..+..++
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~g~~VlliD 35 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASDYDKIYAVD 35 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTTCSCEEEEE
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 566999999999999999997655434455555
No 468
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=91.59 E-value=0.081 Score=51.76 Aligned_cols=22 Identities=32% Similarity=0.502 Sum_probs=20.3
Q ss_pred EEEEEEccCCCcHHHHHHHHHH
Q 003802 16 RFIGICGMGGIGKTTLAKVLYN 37 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~ 37 (794)
.+++|+|+.|+|||||++.++-
T Consensus 33 e~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999875
No 469
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=91.55 E-value=0.26 Score=50.21 Aligned_cols=29 Identities=31% Similarity=0.444 Sum_probs=24.6
Q ss_pred CCCeEEEEEEccCCCcHHHHHHHHHHHhh
Q 003802 12 LDDVRFIGICGMGGIGKTTLAKVLYNTLK 40 (794)
Q Consensus 12 ~~~~~vi~i~G~~GvGKTtLa~~v~~~~~ 40 (794)
-....+++|+|+.|+|||||.+.+.....
T Consensus 52 ~~~g~~v~i~G~~GaGKSTLl~~l~g~~~ 80 (337)
T 2qm8_A 52 TGRAIRVGITGVPGVGKSTTIDALGSLLT 80 (337)
T ss_dssp CCCSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHhhh
Confidence 34568999999999999999999987543
No 470
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=91.55 E-value=0.27 Score=50.42 Aligned_cols=39 Identities=26% Similarity=0.359 Sum_probs=27.9
Q ss_pred CCCeEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEE
Q 003802 12 LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (794)
Q Consensus 12 ~~~~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~ 50 (794)
.+...++.+.|.||+||||+|..++......=..+..++
T Consensus 23 ~~~~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD 61 (349)
T 3ug7_A 23 KDGTKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVS 61 (349)
T ss_dssp SCSCEEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEE
T ss_pred cCCCEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEe
Confidence 345677888899999999999999886544423344443
No 471
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=91.53 E-value=0.098 Score=51.34 Aligned_cols=23 Identities=35% Similarity=0.462 Sum_probs=20.8
Q ss_pred EEEEEEccCCCcHHHHHHHHHHH
Q 003802 16 RFIGICGMGGIGKTTLAKVLYNT 38 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~~ 38 (794)
.+++|+|+.|+|||||++.++--
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999998863
No 472
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=91.47 E-value=0.073 Score=50.16 Aligned_cols=22 Identities=41% Similarity=0.622 Sum_probs=20.2
Q ss_pred EEEEEEccCCCcHHHHHHHHHH
Q 003802 16 RFIGICGMGGIGKTTLAKVLYN 37 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~ 37 (794)
.+++|+|+.|+|||||++.++-
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~G 57 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTIST 57 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4789999999999999999976
No 473
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.46 E-value=0.087 Score=50.81 Aligned_cols=22 Identities=27% Similarity=0.483 Sum_probs=20.3
Q ss_pred EEEEEEccCCCcHHHHHHHHHH
Q 003802 16 RFIGICGMGGIGKTTLAKVLYN 37 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~ 37 (794)
.+++|+|+.|+|||||.+.++-
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999975
No 474
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=91.43 E-value=0.082 Score=48.57 Aligned_cols=21 Identities=43% Similarity=0.482 Sum_probs=19.0
Q ss_pred EEEEEccCCCcHHHHHHHHHH
Q 003802 17 FIGICGMGGIGKTTLAKVLYN 37 (794)
Q Consensus 17 vi~i~G~~GvGKTtLa~~v~~ 37 (794)
-|+|+|.+|+|||||+..++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999999876
No 475
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=91.42 E-value=0.11 Score=48.39 Aligned_cols=24 Identities=21% Similarity=0.336 Sum_probs=21.2
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHH
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNT 38 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~ 38 (794)
...|+|+|..|+|||||++.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 457889999999999999999873
No 476
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=91.39 E-value=0.095 Score=50.65 Aligned_cols=22 Identities=32% Similarity=0.475 Sum_probs=20.5
Q ss_pred EEEEEEccCCCcHHHHHHHHHH
Q 003802 16 RFIGICGMGGIGKTTLAKVLYN 37 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~ 37 (794)
.+++|+|+.|+|||||++.++-
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 6899999999999999999975
No 477
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=91.37 E-value=0.3 Score=60.80 Aligned_cols=96 Identities=17% Similarity=0.178 Sum_probs=53.7
Q ss_pred hhhHhHh-cCCCCeEEEEEEccCCCcHHHHHHHHHHHhhccccceEEEEechhhhcccChHHHHHHHHHHHhccccc---
Q 003802 3 KMNGYLE-AGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERDL--- 78 (794)
Q Consensus 3 ~l~~~l~-~~~~~~~vi~i~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--- 78 (794)
+|.+++. .+-+.-+++.|+|++|+||||||.+++......-..++|++. ....+ ... .+.+....+.
T Consensus 370 ~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~~a~~G~~vlyis~----E~s~~--~~~---a~~lGvd~~~L~I 440 (2050)
T 3cmu_A 370 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA----EHALD--PIY---ARKLGVDIDNLLC 440 (2050)
T ss_dssp HHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECT----TSCCC--HHH---HHHTTCCTTTCEE
T ss_pred HHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEc----CCCHH--HHH---HHHcCCCHHHeEE
Confidence 3444554 222334699999999999999999998866544346788762 22222 111 2332221111
Q ss_pred -cccchhhhHHHHHHHh-cCCeEEEEEcCCC
Q 003802 79 -IIWDVHKGINLIRWRL-CRKRVLVILDDVD 107 (794)
Q Consensus 79 -~~~~~~~~~~~l~~~l-~~~r~LlVlDd~~ 107 (794)
...+.++..+.++... +.+.-++|+|.+.
T Consensus 441 ~~~~~~e~il~~~~~lv~~~~~~lIVIDSL~ 471 (2050)
T 3cmu_A 441 SQPDTGEQALEICDALARSGAVDVIVVDSVA 471 (2050)
T ss_dssp ECCSSHHHHHHHHHHHHHHTCCSEEEESCGG
T ss_pred eCCCCHHHHHHHHHHHHHhcCCcEEEECCHH
Confidence 1123344444444333 2456699999873
No 478
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=91.37 E-value=0.089 Score=51.57 Aligned_cols=22 Identities=36% Similarity=0.644 Sum_probs=20.3
Q ss_pred EEEEEEccCCCcHHHHHHHHHH
Q 003802 16 RFIGICGMGGIGKTTLAKVLYN 37 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~ 37 (794)
.+++|+|+.|+|||||++.++-
T Consensus 38 e~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 5899999999999999999975
No 479
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=91.36 E-value=0.089 Score=51.38 Aligned_cols=22 Identities=27% Similarity=0.434 Sum_probs=20.4
Q ss_pred EEEEEEccCCCcHHHHHHHHHH
Q 003802 16 RFIGICGMGGIGKTTLAKVLYN 37 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~ 37 (794)
.+++|.|+.|+|||||++.++-
T Consensus 51 ei~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEEcCCCCcHHHHHHHHHc
Confidence 5899999999999999999875
No 480
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=91.34 E-value=0.091 Score=50.24 Aligned_cols=23 Identities=26% Similarity=0.580 Sum_probs=20.9
Q ss_pred EEEEEEccCCCcHHHHHHHHHHH
Q 003802 16 RFIGICGMGGIGKTTLAKVLYNT 38 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~~ 38 (794)
.+++|+|+.|+|||||++.++--
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999863
No 481
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=91.31 E-value=0.091 Score=51.28 Aligned_cols=22 Identities=36% Similarity=0.449 Sum_probs=20.3
Q ss_pred EEEEEEccCCCcHHHHHHHHHH
Q 003802 16 RFIGICGMGGIGKTTLAKVLYN 37 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~ 37 (794)
.+++|+|+.|+|||||.+.++-
T Consensus 34 e~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999975
No 482
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=91.30 E-value=0.092 Score=50.85 Aligned_cols=22 Identities=45% Similarity=0.758 Sum_probs=20.3
Q ss_pred EEEEEEccCCCcHHHHHHHHHH
Q 003802 16 RFIGICGMGGIGKTTLAKVLYN 37 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~ 37 (794)
.+++|+|+.|+|||||++.++-
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999975
No 483
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.19 E-value=0.095 Score=50.98 Aligned_cols=22 Identities=32% Similarity=0.616 Sum_probs=20.4
Q ss_pred EEEEEEccCCCcHHHHHHHHHH
Q 003802 16 RFIGICGMGGIGKTTLAKVLYN 37 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~ 37 (794)
.+++|.|+.|+|||||.+.++-
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999975
No 484
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=91.06 E-value=0.1 Score=50.57 Aligned_cols=24 Identities=25% Similarity=0.408 Sum_probs=21.2
Q ss_pred EEEEEEccCCCcHHHHHHHHHHHh
Q 003802 16 RFIGICGMGGIGKTTLAKVLYNTL 39 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~~~ 39 (794)
.+++|+|+.|+|||||++.++--.
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 489999999999999999987643
No 485
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=91.00 E-value=0.1 Score=50.99 Aligned_cols=23 Identities=39% Similarity=0.619 Sum_probs=20.8
Q ss_pred EEEEEEccCCCcHHHHHHHHHHH
Q 003802 16 RFIGICGMGGIGKTTLAKVLYNT 38 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~~ 38 (794)
.+++|+|+.|+|||||++.++--
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 58999999999999999999763
No 486
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=91.00 E-value=0.1 Score=51.34 Aligned_cols=22 Identities=36% Similarity=0.613 Sum_probs=20.4
Q ss_pred EEEEEEccCCCcHHHHHHHHHH
Q 003802 16 RFIGICGMGGIGKTTLAKVLYN 37 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~ 37 (794)
.+++|+|+.|+|||||++.++-
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~G 67 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQN 67 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999975
No 487
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=90.97 E-value=0.22 Score=54.12 Aligned_cols=30 Identities=27% Similarity=0.185 Sum_probs=25.2
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHHHhhccc
Q 003802 14 DVRFIGICGMGGIGKTTLAKVLYNTLKDQF 43 (794)
Q Consensus 14 ~~~vi~i~G~~GvGKTtLa~~v~~~~~~~f 43 (794)
...+|.++|+.|.||||+|+++++.....|
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~~~~ 63 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLNWIG 63 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcC
Confidence 357899999999999999999998765444
No 488
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=90.90 E-value=0.22 Score=46.87 Aligned_cols=33 Identities=33% Similarity=0.303 Sum_probs=25.2
Q ss_pred EEEE-EccCCCcHHHHHHHHHHHhhccccceEEEE
Q 003802 17 FIGI-CGMGGIGKTTLAKVLYNTLKDQFEASSFLA 50 (794)
Q Consensus 17 vi~i-~G~~GvGKTtLa~~v~~~~~~~f~~~~~~~ 50 (794)
+|+| .+.||+||||+|..++..+...- .+..++
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~la~~g-~VlliD 35 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYLALQG-ETLLID 35 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHTTS-CEEEEE
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHhcC-CEEEEE
Confidence 4555 57999999999999998765544 566665
No 489
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=90.83 E-value=0.17 Score=50.40 Aligned_cols=26 Identities=23% Similarity=0.324 Sum_probs=22.8
Q ss_pred CeEEEEEEccCCCcHHHHHHHHHHHh
Q 003802 14 DVRFIGICGMGGIGKTTLAKVLYNTL 39 (794)
Q Consensus 14 ~~~vi~i~G~~GvGKTtLa~~v~~~~ 39 (794)
.-.+++|+|+.|.|||||++.+..-+
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 34689999999999999999998765
No 490
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=90.83 E-value=0.11 Score=50.54 Aligned_cols=22 Identities=32% Similarity=0.613 Sum_probs=20.4
Q ss_pred EEEEEEccCCCcHHHHHHHHHH
Q 003802 16 RFIGICGMGGIGKTTLAKVLYN 37 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~ 37 (794)
.+++|.|+.|+|||||.+.++-
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~G 53 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLG 53 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999976
No 491
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=90.81 E-value=0.11 Score=51.35 Aligned_cols=22 Identities=36% Similarity=0.483 Sum_probs=20.3
Q ss_pred EEEEEEccCCCcHHHHHHHHHH
Q 003802 16 RFIGICGMGGIGKTTLAKVLYN 37 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~ 37 (794)
.+++|+|+.|+|||||++.++-
T Consensus 48 e~~~liG~NGsGKSTLlk~l~G 69 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNA 69 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 4899999999999999999976
No 492
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=90.80 E-value=0.13 Score=54.14 Aligned_cols=29 Identities=31% Similarity=0.428 Sum_probs=24.3
Q ss_pred eEEEEEEccCCCcHHHHHHHHHHHhhccc
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYNTLKDQF 43 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~~~~~~f 43 (794)
.+-|.++|++|+|||++|+.++......|
T Consensus 50 ~~~iLl~GppGtGKT~lar~lA~~l~~~~ 78 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIARRLAKLANAPF 78 (444)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCCE
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHcCCCc
Confidence 45688999999999999999999765433
No 493
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=90.76 E-value=0.27 Score=47.44 Aligned_cols=37 Identities=19% Similarity=0.192 Sum_probs=27.7
Q ss_pred CeEEEEEE-ccCCCcHHHHHHHHHHHhhcc-ccceEEEE
Q 003802 14 DVRFIGIC-GMGGIGKTTLAKVLYNTLKDQ-FEASSFLA 50 (794)
Q Consensus 14 ~~~vi~i~-G~~GvGKTtLa~~v~~~~~~~-f~~~~~~~ 50 (794)
..++|+|+ +.||+||||+|..++..+... =..+..++
T Consensus 3 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD 41 (245)
T 3ea0_A 3 AKRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVD 41 (245)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEE
T ss_pred CCeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEEE
Confidence 35788887 579999999999999977665 33455555
No 494
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=90.74 E-value=0.11 Score=50.95 Aligned_cols=22 Identities=27% Similarity=0.469 Sum_probs=20.3
Q ss_pred EEEEEEccCCCcHHHHHHHHHH
Q 003802 16 RFIGICGMGGIGKTTLAKVLYN 37 (794)
Q Consensus 16 ~vi~i~G~~GvGKTtLa~~v~~ 37 (794)
.+++|+|+.|+|||||++.++-
T Consensus 34 e~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 5899999999999999999875
No 495
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=90.70 E-value=0.18 Score=52.59 Aligned_cols=25 Identities=12% Similarity=0.100 Sum_probs=21.4
Q ss_pred EEEEEccCCCcHHHHHHHHHHHhhc
Q 003802 17 FIGICGMGGIGKTTLAKVLYNTLKD 41 (794)
Q Consensus 17 vi~i~G~~GvGKTtLa~~v~~~~~~ 41 (794)
-++|.|.+|+|||+|+.++++....
T Consensus 153 r~~Ifgg~G~GKt~L~~~Ia~~~~~ 177 (465)
T 3vr4_D 153 KLPVFSGSGLPHKELAAQIARQATV 177 (465)
T ss_dssp BCCEEECTTSCHHHHHHHHHHHCBC
T ss_pred EEEEeCCCCcChHHHHHHHHHHHHh
Confidence 4678999999999999999986554
No 496
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=90.68 E-value=0.16 Score=46.57 Aligned_cols=23 Identities=26% Similarity=0.342 Sum_probs=20.9
Q ss_pred eEEEEEEccCCCcHHHHHHHHHH
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYN 37 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~ 37 (794)
...|+|+|.+|+|||||+..+..
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 46789999999999999999986
No 497
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=90.63 E-value=0.14 Score=45.73 Aligned_cols=21 Identities=33% Similarity=0.610 Sum_probs=19.2
Q ss_pred EEEEEccCCCcHHHHHHHHHH
Q 003802 17 FIGICGMGGIGKTTLAKVLYN 37 (794)
Q Consensus 17 vi~i~G~~GvGKTtLa~~v~~ 37 (794)
.|++.|.+|+|||||+..+..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~ 25 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQ 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 478999999999999999986
No 498
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=90.60 E-value=0.18 Score=45.10 Aligned_cols=23 Identities=17% Similarity=0.377 Sum_probs=20.4
Q ss_pred eEEEEEEccCCCcHHHHHHHHHH
Q 003802 15 VRFIGICGMGGIGKTTLAKVLYN 37 (794)
Q Consensus 15 ~~vi~i~G~~GvGKTtLa~~v~~ 37 (794)
.--|+|+|.+|+|||||+..+..
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~ 27 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCK 27 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHHc
Confidence 45678999999999999999987
No 499
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=90.52 E-value=0.18 Score=46.16 Aligned_cols=25 Identities=40% Similarity=0.408 Sum_probs=21.4
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHHH
Q 003802 13 DDVRFIGICGMGGIGKTTLAKVLYN 37 (794)
Q Consensus 13 ~~~~vi~i~G~~GvGKTtLa~~v~~ 37 (794)
.....|+|+|.+|+|||||+..+..
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~ 38 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLAS 38 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHhc
Confidence 3456788999999999999998875
No 500
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=90.46 E-value=0.14 Score=50.29 Aligned_cols=22 Identities=36% Similarity=0.697 Sum_probs=20.1
Q ss_pred EEEEEccCCCcHHHHHHHHHHH
Q 003802 17 FIGICGMGGIGKTTLAKVLYNT 38 (794)
Q Consensus 17 vi~i~G~~GvGKTtLa~~v~~~ 38 (794)
.++|+|+.|+|||||.+.++..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~ 25 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKS 25 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999873
Done!